Supplementary material for van Dijk et al., Proc. Natl. Acad. Sci. USA, 10.1073/pnas.250216797

Fig. 6. (A--K) Trees used for calculating the likelihoods of the CRYAA, AQP2, and IRBP signatures on alternative topologies. See Material and Methods and legends of Fig. 2 for information about tree construction procedures and for full species names. (A--D) Complete topologies of the CRYAA trees presented in Fig. 2 A--D, respectively; (E--H) complete topologies of the AQP2 trees (E, unconstrained ML tree; F--H, constrained along the same phylogenetic criteria as B--D, respectively); (I--K) complete topologies of the IRBP trees (I, unconstrained; J and K constrained as in C and D, respectively). The estimated posterior probabilities of observing the AQP2 and IRBP Afrotherian signatures are given at the indicated nodes in the respective trees (for explanation, see Results).