Supporting Information

Files in this Data Supplement:

Supporting Table 4
Supporting Table 5
Supporting Figure 2
Supporting Table 6
Supporting Table 7
Supporting Table 8

Fig. 2. Biofilm formation in the 6-month and 96-month isolates of patient 1.

Table 6. Mutations in patient 1 isolates. Each entry in the graphic corresponds to the presence or absence of a mutation. A gray 1 indicates a genotype that matches the 6-month isolate, a red 2 indicates a genotype that matches the 96-month isolate, other colored numerals indicate additional mutations not present in the 96-month isolate, and blanks indicate no available data. In mutation m52, the copy number of a tandem repeat is given instead of a gray 1 or red 2. Mutations present exclusively in intermediate isolates are shown in the table with their mutation number (s#) in the earliest isolate containing the mutation. The whole genomes of isolates 1 and 35 were sequenced. Refer to Tables 4 and 5 for specific information about each mutation.