#NEXUS Begin DATA; Dimensions ntax=20 nchar=722; Format datatype=NUCLEOTIDE interleave gap=-; Matrix [ 1 11 21 31 41 51 61 71 81 91 ] [ | | | | | | | | | | ] 'gi|9717237|gb|AY004128.1| Tasmannia lanceolata 18S ribosomal RNA gene' GAAGGATCATTGTGGAGTACC-GAACCA-TGCAGAGCAGCGCGACCGGTGTGGACATGTCAA-TTATC--ATTCTGGGGG----TGGGGACGCTGGCGAG 'gi|9717236|gb|AY004127.1| Tasmannia insipida clone 2 18S ribosomal RNA gene' GAAGGATCATTGTGGAGTACC-GAACCC-TGCAAAGCAGCGCGACTGGTGTGGACATGTCAA-TTATC--ATTCTGGGGG----TGGGGACGCTAGCGCG 'gi|9717235|gb|AY004126.1| Drimys winteri 18S ribosomal RNA gene' GAAGGATCATTGTGGATAGCC-GAACCC-TGCAGAGCAGCACGACTGGTGTGAATCTGTCAAATTATCAAATTCCGGGGGGGGGTGGGGACGCTAGC--G 'gi|9717234|gb|AY004125.1| Pseudowintera colorata clone 2 18S ribosomal RNA gene' GAAGGATCATTGTGGAGAACC-GAACCCCTGCAAAGCAGCACGACTGGTGTGAATATGTCAA-TTGTC--ATTCTGGGGG----TGGGGACGCTAGC--G 'gi|9717233|gb|AY004124.1| Pseudowintera axillaris clone 2 18S ribosomal RNA gene' GAAGGATCATTGTGGAGAACC-GAACACCTGCAAAGCAGCACGACTGGTGTGAATATGTCAA-TTGTC--ATTCTGGGGG----TGGGGACGCTAGC--G 'gi|9717232|gb|AY004123.1| Bubbia comptonii clone 2 18S ribosomal RNA gene' GAAGGATCATTGTGGAGCACCCGAACCC-TGCAAAGCAGCACGACTGGTGTGAATATGTCAA-CTGTC--ATCCTGGGGG----TGGGGACGCTAGC--G 'gi|9717231|gb|AY004122.1| Zygogynum acsmithii 18S ribosomal RNA gene' GAAGGATCATTGTGGAGCACCCGAACCC-TGCAAAGCAGCACGACTGGTGTGAATATGTCAA-CTGTC--ATTCTGGGGG----TGGGGACGCTAGC--G 'gi|9717230|gb|AY004121.1| Exospermum stipitatum clone 2 18S ribosomal RNA gene' GAAGGATCATTGTGGAGCACCCGAACCC-TGCAAAGCAGCACGACTGGTGTGAATATGTCAA-CTGTC--ATTCTGGGGG----TGGGGACGCTAGC--G 'gi|9717229|gb|AY004120.1| Zygogynum balansae clone 2 18S ribosomal RNA gene' GAAGGATCATTGTGGAGCACCCGAACCC-TGCAAAGCAGCACGACCGGTGTGAATATGTCAA-CTGTC--ATTCCGGGGG----TGGGGACGCTAGC--G 'gi|9717228|gb|AY004119.1| Zygogynum pancheri 18S ribosomal RNA gene' GAAGGATCATTGTGGAGCACCCGAACCC-TGCAAAGCAGCACGACTGGTGTGAATATGTCAA-CTGTC--ATTCTGGGGG----TGGGGACGCTAGC--G 'gi|9717227|gb|AY004118.1| Zygogynum bicolor clone 2 18S ribosomal RNA gene' GAAGGATCATTGTGGAGCACCCGAACCC-TGCAAAGCAGCACGACTGGTGTGAATATGTCAA-CTGTC--ATTCTGGGGG----TGGGGACGCTAGC--G 'gi|9717226|gb|AY004117.1| Tasmannia insipida clone 1 18S ribosomal RNA gene' GAAGGATCATTGTGGAGTACC-GAACCC-TGCAAAGCAGCGCGACTGGTGTGGACATGTCAA-TTATC--ATTCTGGGGG----TGGGGACGCTAGCGCG 'gi|9717225|gb|AY004116.1| Pseudowintera colorata clone 1 18S ribosomal RNA gene' GAAGGATCATTGTGGAGAACC-GAACCCCTGCAAAGCAGCACGACTGGTGTGAATATGTCAA-TTGTC--ATTCTGGGGG----TGGGGACGCTAGC--G 'gi|9717224|gb|AY004115.1| Pseudowintera axillaris clone 1 18S ribosomal RNA gene' GAAGGATCATTGTGGAGAACC-GAACACCTGCAAAGCAGCACGACTGGTGTGAATATGTCAA-TTGTC--ATTCTGGGGG----TGGGGACGCTAGC--G 'gi|9717223|gb|AY004114.1| Bubbia comptonii clone 1 18S ribosomal RNA gene' GAAGGATCATTGTGGAGAACC-GAACCC-TGCAAAGCAGCACGACTGGTGTTCATATGTCAA-TTGTC--ATTCTAGGGG----TGGGGACGCTAGC--G 'gi|9717222|gb|AY004113.1| Exospermum stipitatum clone 1 18S ribosomal RNA gene' GAAGGATCATTGTGGAGAACC-GAACCC-TGCAAAGCAGCACGACTGGTGTTCATATGTCAA-TTGTC--ATTCTAGGGG----TGGGGACGCTAGC--G 'gi|9717221|gb|AY004112.1| Zygogynum balansae clone 1 18S ribosomal RNA gene' GAAGGATCATTGTGGAGAACC-GAACCC-TCGAAAGCAGCACGACTGGTGTTCATATGTCAA-TTGTC--ATTCTAGGGG----TGGGGACGCTAGC--G 'gi|9717220|gb|AY004111.1| Zygogynum bicolor clone 1 18S ribosomal RNA gene' GAAGGATCATTGTGGAGAACC-GAACCC-TGCAAAGCAGCACGACTGGTGTTCATATGTCAA-TTGTC--ATTCTAGGGG----TGGGGACGCTAGC--G ' Zygogynum acsmithii CLONE 2' GAAGGATCATTGTGGAGCACCCGAACCC-TGCAAAGCAGCACGACTGGTGTGAATATGTCAA-CTGTC--ATTCTGGGGG----TGGGGACGCTAGC--G 'Drimys winteri CLONE 1' GAAGGATCATTGTGGATAGCC-GAACCC-TGCAGAGCAGCACGACTGGTGTGAATCTGTCAAATTATCAAATTCCGGGGGGGG-TGGGGACGCTAGC--G [ 101 111 121 131 141 151 161 171 181 191 ] [ | | | | | | | | | | ] 'gi|9717237|gb|AY004128.1| Tasmannia lanceolata 18S ribosomal RNA gene' CCTGGCGACTCCCCCTCAC--ATCCAGGCTT-GCGAGTTCCGTGCCCGCTACTCCCCGCGAGTTCAGGCACCGGCTGGCAACTTGGGTGAATAACGAACC 'gi|9717236|gb|AY004127.1| Tasmannia insipida clone 2 18S ribosomal RNA gene' CCTGGCGACTCCCCCTCAC--ATCCAGGCTT-GCAAGTTCCGTGCCCGCTACTCCCCGCGAGTTCAGGCAACGGCTGGCGACTTGGGTGAATAACGAACC 'gi|9717235|gb|AY004126.1| Drimys winteri 18S ribosomal RNA gene' CCTAGCGACGCCCCCTCACGCACCCAGGATT-GCAGGTTCCGTGCCCGTTGCTCCCCGCGAGTTCGGGCACCGGCTGGCAGCT-GGGTGAATAACGAACC 'gi|9717234|gb|AY004125.1| Pseudowintera colorata clone 2 18S ribosomal RNA gene' CCTAGCGACGCCCCCTCAC--ATCCAGGGTT-GCAAGCTCCGTGCCCGCTACTCCCCGGGAGTTCAGGCACCGGCTGGCAGCTTGGGTGAATAACGAACC 'gi|9717233|gb|AY004124.1| Pseudowintera axillaris clone 2 18S ribosomal RNA gene' CCTAGCGACGCCCCCTCAC--ATCCAGGGTT-GCAAGCTCCGTGCCCTCTACTCCCCGGGAGTTCAGGCACCGGCTGGCAGCTTGGGTGAATAACGAACC 'gi|9717232|gb|AY004123.1| Bubbia comptonii clone 2 18S ribosomal RNA gene' CCTAGCGACGCCCCCTCAC--ATCCAGGACT-GCAAGGTCCGTGCCCGCTACTCCCCGCGAGTTCAGGCACCGGCTGGCAGCTTGGGTGAGTAACGAACC 'gi|9717231|gb|AY004122.1| Zygogynum acsmithii 18S ribosomal RNA gene' CCTAGCGACGCCCCCTCAC--ATCCAGGACT-GCGAGGTCCGTGCCCGCTACTCCCCGCGAGTTCAGGCACCGGCTGGCAGCTTGGGTGAATAACGAACC 'gi|9717230|gb|AY004121.1| Exospermum stipitatum clone 2 18S ribosomal RNA gene' CCTAGCGACGCCCCCTCAC--ATCCAGGACT-GCGAGGTCCGTGCCCGCTACTCCCCGCGAGTTCAGGCACCGGCTGGCAGCTTGGGTGAATAACGAACC 'gi|9717229|gb|AY004120.1| Zygogynum balansae clone 2 18S ribosomal RNA gene' CCTAGCGACGCCCCCTCAC--ATCCAGGACT-GCGAGGTCCGTGCCCGCTACTCCCCGCGAGTTCAGGCGCCGGCTGGCAGCTTGGGTGAATAACGAACC 'gi|9717228|gb|AY004119.1| Zygogynum pancheri 18S ribosomal RNA gene' CCTAGCGACGCCCCCTCAC--ATCCAGGACT-GCGAGGTCCGTGCCCGCTACTCCCCGCGAGTTCAGGCACCGGCTGGCAGCTTGGGTGAATAACGAACC 'gi|9717227|gb|AY004118.1| Zygogynum bicolor clone 2 18S ribosomal RNA gene' CCTAGCGACGCCCCCTCAC--ATCCAGGACT-GCGAGGTCCGTGCCCGCTACTCCCCGCGAGTTCAGGCACCGGCTGGCAGCTTGGGTGAATAACGAACC 'gi|9717226|gb|AY004117.1| Tasmannia insipida clone 1 18S ribosomal RNA gene' CCTGGCGACTCCCCCTCAC--ATCCAGGCTT-GCAAGTTCCGTGCCCGCTACTCCCCGCGAGTTCAGGCACCGGCTGGCGACTTGGGTGAATAACGAACC 'gi|9717225|gb|AY004116.1| Pseudowintera colorata clone 1 18S ribosomal RNA gene' CCTAGCGACGCCCCCTCAC--ATCCAGGGTT-GCAAGCTCCGTGCCCGCTACTCCCCGGGAGTTCAGGCACCGGCTGGCAGCTTGGGTGAATAACGAACC 'gi|9717224|gb|AY004115.1| Pseudowintera axillaris clone 1 18S ribosomal RNA gene' CCTAGCGACGCCCCCTCAC--ATCCAGGGTT-GCAAGCTCCGTGCCCTCTACTCCCCGGGAGTTCAGGCACCGGCTGGCAGCTTGGGTGAATAACGAACC 'gi|9717223|gb|AY004114.1| Bubbia comptonii clone 1 18S ribosomal RNA gene' CCTAGTGACGCCCCCTCAC--ATCCAGGATTTGCAAGGTCCGTGCCCGCTACTCCCCGCGAGTTCAGGCACCGGCTGGCAGCTTGGGTGAATAACGAACC 'gi|9717222|gb|AY004113.1| Exospermum stipitatum clone 1 18S ribosomal RNA gene' CCTAGTGACGCCCCCTCAC--ATCCAGGATTTGCAAGGTCCGTGCCCGCTACTCCCCGCGAGTTCAGGCACCGGCTGGCAGCTTGGGTGAATAACGAACC 'gi|9717221|gb|AY004112.1| Zygogynum balansae clone 1 18S ribosomal RNA gene' CCTAGTGACGCCCCCTCAC--ATCCAGGATTTGCAAGGTCCGTGCCCGCTACTCCCCGCGAGTTCAGGCACCGGCTGGCAGCTTGGGTGAATAACGAACC 'gi|9717220|gb|AY004111.1| Zygogynum bicolor clone 1 18S ribosomal RNA gene' CCTAGTGACGCCCCCTCAC--ATCCAGGATTTGCAAGGTCCGTGCCCGCTACTCCCCGCGAGTTCAGGCACCGGCTGGCAGCTTGGGTGAATAACGAACC ' Zygogynum acsmithii CLONE 2' CCTAGCGACGCCCCCTCAC--ATCTAGGACT-GCGAGGTCCGTGCCCGCTACTCCCCGCGAGTTCAGGCACCGGCTGGCAGCTTGGGTGAATAACGAACC 'Drimys winteri CLONE 1' CCTAGCGACGCCCCCTCACGCACCCAGGATT-GCAGGTTCCGTGCCCGTTGCTCCCCGCGAGTTCGGGCACCGGCTGGCAGCT-GGGTGAATAACGAACC [ 201 211 221 231 241 251 261 271 281 291 ] [ | | | | | | | | | | ] 'gi|9717237|gb|AY004128.1| Tasmannia lanceolata 18S ribosomal RNA gene' CCGGCGCAACGGGCGCCAAGGAAATGCAGCAGTG--GAATGTGCGATGGATATC---ATCGCCATGATGACTTTACATGACTCTCGGCAACGGATATCTC 'gi|9717236|gb|AY004127.1| Tasmannia insipida clone 2 18S ribosomal RNA gene' CTGGCGCAACTGGCGCCAAGGAAATGCAGCAGTG--GAATGTGCGATGGATATC---ATCGCCATGATGACTTTACACGACTCTCGGCAACGGATATCTC 'gi|9717235|gb|AY004126.1| Drimys winteri 18S ribosomal RNA gene' CCGGCGCAACTGGCGCCAAGGAAATGCAGCAGTA--GAATGTGCGGTGAAAATGCC-ATCGCCATGATGACTTTACATGACTCTCGGCAACGGATATCTC 'gi|9717234|gb|AY004125.1| Pseudowintera colorata clone 2 18S ribosomal RNA gene' CCGGCGCAACTGGCGCCAAGGAAATGCAGCAATA--GAATGTGCGATGAATATATT-GTCGCCATGACGACTTCACATGACTCTCGGCAACGGATATCTC 'gi|9717233|gb|AY004124.1| Pseudowintera axillaris clone 2 18S ribosomal RNA gene' CCGGCGCAACTGGCGCCAAGGAAATGCAGCAGTA--GAATGTGCGATGAATATC---GTCGCCATGACGACTTCACATGACTCTCGGCAACGGATATCTC 'gi|9717232|gb|AY004123.1| Bubbia comptonii clone 2 18S ribosomal RNA gene' CCGGCGCAACTGGCGCCAAGGAAATGCAGCAGTAGAGAATGTGCGATGAATATC---ATCGCCAGGACGACTTTACATGACTCTCGGCAACGGATATCTC 'gi|9717231|gb|AY004122.1| Zygogynum acsmithii 18S ribosomal RNA gene' CCGGCGCAACTGGCGCCAAGGAAATGCAGCAGTAGAGAATGTGCGATGAATATCATCATCGCCAGGACGACTTTACATGACTCTCGGCAACGGATATCTC 'gi|9717230|gb|AY004121.1| Exospermum stipitatum clone 2 18S ribosomal RNA gene' CCGGCGCAACTGGCGCCAAGGAAATGCAGCAGTAGAGAATGTGCGATGAATATCATCATCGCCAGGACGACTTTACATGACTCTCGGCAACGGATATCTC 'gi|9717229|gb|AY004120.1| Zygogynum balansae clone 2 18S ribosomal RNA gene' CCGGCGCAACTGGCGCCAAGGAAATGCAGCAGTAGAGAATGTGCGATGAATATCATCATCGCCAGGACGACTTTACATGACTCTCGGCAACGGATATCTC 'gi|9717228|gb|AY004119.1| Zygogynum pancheri 18S ribosomal RNA gene' CCGGCGCAACTGGCGCCAAGGAAATGCAGCAGTAGAGAATGTGCGATGAATATCATCATCGCCAGGACGACTTTACATGACTCTCGGCAACGGATATCTC 'gi|9717227|gb|AY004118.1| Zygogynum bicolor clone 2 18S ribosomal RNA gene' CCGGCGCAACTGGCGCCAAGGAAATGCAGCAGTAGAGAATGTGCGATGAATATCATCATCGCCAGGACGACTTTACATGACTCTCGGCAACGGATATCTC 'gi|9717226|gb|AY004117.1| Tasmannia insipida clone 1 18S ribosomal RNA gene' CCGGCGCAACTGGCGCCAAGGAAATGCAGCAGTG--GAATGTGCGATGGATATC---ATCGCCATGATGACTTTACACGACTCTCGGCAACGGATATCTC 'gi|9717225|gb|AY004116.1| Pseudowintera colorata clone 1 18S ribosomal RNA gene' CCGGCGCAACTGGCGCCAAGGAAATGCAGCAGTA--GAATGTGCGATGAATATATT-GTCGCCATGACGACTTCACATGACTCTCGGCAACGGATATCTC 'gi|9717224|gb|AY004115.1| Pseudowintera axillaris clone 1 18S ribosomal RNA gene' CCGGCGCAACTGGCGCCAAGGAAATGCAGCAGTA--GAATGTGCGATGAATATC---GTCGCCATGACGACTTCACATGACTCTCGGCAACGGATATCTC 'gi|9717223|gb|AY004114.1| Bubbia comptonii clone 1 18S ribosomal RNA gene' CCGGCGCAAGTGGCGCCAAGGGCAGTAGAATGTG---------TGATGAATATC---ATCGCCAGGACGACTTTACACGACTCTCGGCAACGGATATCTC 'gi|9717222|gb|AY004113.1| Exospermum stipitatum clone 1 18S ribosomal RNA gene' CCGGCGCAAGTGGCGCCAAGGAAATGCAGCAGTA--GAATGTGTGATGAATATC---ATCGCCAGGACGACTTTACACGACTCTCGGCAACGGATATCTC 'gi|9717221|gb|AY004112.1| Zygogynum balansae clone 1 18S ribosomal RNA gene' CCGGCGCAAGTGGCGCCAAGGAAATGCAGCAGTA--GAATGTGTGATGAATATC---ATCGCCAGGACGACTTTACACGACTCTCGGCAACGGATATCTC 'gi|9717220|gb|AY004111.1| Zygogynum bicolor clone 1 18S ribosomal RNA gene' CCGGCGCAAGTGGCGCCAAGGAAATGCAGCAGTA--GAATGTGTGATGAATATC---ATCGCCAGGACGACTTTACACGACTCTCGGCAACGGATATCTC ' Zygogynum acsmithii CLONE 2' CCGGCGCAACTGGCGCCAAGGAAATGCAGCAGTAGAGAATGTGCGATGAATATCATCATCGCCAGGACGACTTTACATGACTCTCGGCAACGGATATCTC 'Drimys winteri CLONE 1' CCGGCGCAACTGGCGCCAAGGAAATGCAGCAGTA--GAATGTGCGGTGAAAATGCC-ATCGCCATGATGACTTTACATGACTCTCGGCAACGGATATCTC [ 301 311 321 331 341 351 361 371 381 391 ] [ | | | | | | | | | | ] 'gi|9717237|gb|AY004128.1| Tasmannia lanceolata 18S ribosomal RNA gene' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG 'gi|9717236|gb|AY004127.1| Tasmannia insipida clone 2 18S ribosomal RNA gene' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG 'gi|9717235|gb|AY004126.1| Drimys winteri 18S ribosomal RNA gene' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG 'gi|9717234|gb|AY004125.1| Pseudowintera colorata clone 2 18S ribosomal RNA gene' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG 'gi|9717233|gb|AY004124.1| Pseudowintera axillaris clone 2 18S ribosomal RNA gene' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG 'gi|9717232|gb|AY004123.1| Bubbia comptonii clone 2 18S ribosomal RNA gene' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG 'gi|9717231|gb|AY004122.1| Zygogynum acsmithii 18S ribosomal RNA gene' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG 'gi|9717230|gb|AY004121.1| Exospermum stipitatum clone 2 18S ribosomal RNA gene' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG 'gi|9717229|gb|AY004120.1| Zygogynum balansae clone 2 18S ribosomal RNA gene' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG 'gi|9717228|gb|AY004119.1| Zygogynum pancheri 18S ribosomal RNA gene' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG 'gi|9717227|gb|AY004118.1| Zygogynum bicolor clone 2 18S ribosomal RNA gene' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG 'gi|9717226|gb|AY004117.1| Tasmannia insipida clone 1 18S ribosomal RNA gene' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG 'gi|9717225|gb|AY004116.1| Pseudowintera colorata clone 1 18S ribosomal RNA gene' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG 'gi|9717224|gb|AY004115.1| Pseudowintera axillaris clone 1 18S ribosomal RNA gene' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG 'gi|9717223|gb|AY004114.1| Bubbia comptonii clone 1 18S ribosomal RNA gene' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG 'gi|9717222|gb|AY004113.1| Exospermum stipitatum clone 1 18S ribosomal RNA gene' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG 'gi|9717221|gb|AY004112.1| Zygogynum balansae clone 1 18S ribosomal RNA gene' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG 'gi|9717220|gb|AY004111.1| Zygogynum bicolor clone 1 18S ribosomal RNA gene' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG ' Zygogynum acsmithii CLONE 2' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG 'Drimys winteri CLONE 1' GGCTCTTGCATCGATGAAGAATGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCTGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAGG [ 401 411 421 431 441 451 461 471 481 491 ] [ | | | | | | | | | | ] 'gi|9717237|gb|AY004128.1| Tasmannia lanceolata 18S ribosomal RNA gene' CCATTAGGTTGAGGGCACGCCTGCCTGGGCATCATGCCTCGTGTAAGCTCCGTGCTCAACTCCT---CGTGTGGGT-GTTGTTCAGGGATGC--GTAGAT 'gi|9717236|gb|AY004127.1| Tasmannia insipida clone 2 18S ribosomal RNA gene' CCATTAGGTTGAGGGCACGCCTGCCTGGGCATCATGCCTCGTGTAAGCTCCGTGCTCAACTCCT---TGCGTGGGT-GTTGTTCAGGGATGC--GTAGAT 'gi|9717235|gb|AY004126.1| Drimys winteri 18S ribosomal RNA gene' CCATTAGGTTGAGGGCACGCCTGCCTGGGCATCATGCCTCGTGTAAGCTCCGTGCTCAACCCCT-----CGTGGGCGGTTGTTCGGGGATGC--GTAGAT 'gi|9717234|gb|AY004125.1| Pseudowintera colorata clone 2 18S ribosomal RNA gene' CCATTAGGTTGAGGGCACGCCTGCCTGGGCATCATGCCT-GTGTAAGCTCCGTGCTCAACTCCT-----TCTGGGT-GTTGTTCAGGGATGCGTGTAGAT 'gi|9717233|gb|AY004124.1| Pseudowintera axillaris clone 2 18S ribosomal RNA gene' CCATTAGGTTGAGGGCACGCCTGCCTGGGCATCATGCCT-GTGTAAGCTCCGTGCTCAACTCCT-----TCTGGGT-GTTGTTCAGGGATGCGTGTAGAT 'gi|9717232|gb|AY004123.1| Bubbia comptonii clone 2 18S ribosomal RNA gene' CCATTAGGCTGAGGGCACGCCTGCCTGGGCATCATGCCC-GTGTAAGCTCCGTGCTCAACTCCT--TGTGGTGGGA-GTTGTTAGCGGATGC--GTGGAT 'gi|9717231|gb|AY004122.1| Zygogynum acsmithii 18S ribosomal RNA gene' CCATTAGGCTGAGGGCACGCCTGCCTGGGCATCATGCCC-GTGTAAGCTCCGTGCTCAACTCCT--TGTGCTGGGA-GTTGTTCACGGAAGC--GTGGAT 'gi|9717230|gb|AY004121.1| Exospermum stipitatum clone 2 18S ribosomal RNA gene' CCATTAGGCTGAGGGCACGCCTGCCTGGGCATCATGCCC-GTGTAAGCTCCGTGCGCAACTCCT--TGTGGTGGGA-GTTGTTCACGGATGC--GTGGAT 'gi|9717229|gb|AY004120.1| Zygogynum balansae clone 2 18S ribosomal RNA gene' CCATTAGGCTGAGGGCACGCCTGCCTGGGCATCATGCCC-GTGTAAGCTCCGTGCTCAACTCCT--TGTGGTGGGA-GCTGTTCACGGATGC--GTGGAT 'gi|9717228|gb|AY004119.1| Zygogynum pancheri 18S ribosomal RNA gene' CCATTAGGCTGAGGGCACGCCTGCCTGGGCATCATGCCCCGTGTAAGCTCCGTGCTCAACTCCT--TGTGGTGGGA-GTTGTTCACGGATGC--GTGGAT 'gi|9717227|gb|AY004118.1| Zygogynum bicolor clone 2 18S ribosomal RNA gene' CCATTAGGCTGAGGGCACGCCTGCCTGGGCATCATGCCC-GTGTAAGCTCCGTGCTCAACTCCT--TGTGGTGGGA-GTTGTTCACGGATGC--GTGGAT 'gi|9717226|gb|AY004117.1| Tasmannia insipida clone 1 18S ribosomal RNA gene' CCATTAGGTTGAGGGCACGCCTGCCTGGGCATCATGCCTCGTGTAAGCTCCGTGCTCAACTCCT--TG-CGTGGGT-GTTGTTCAGGGATGC--GTAGAT 'gi|9717225|gb|AY004116.1| Pseudowintera colorata clone 1 18S ribosomal RNA gene' CCATTAGGTTGAGGGCACGCCTGCCTGGGCATCATGCCT-GTGTAAGCTCCGTGCTCAACTCCT-----TCTGGGT-GTTGTTCAGGGATGCGTGTAGAT 'gi|9717224|gb|AY004115.1| Pseudowintera axillaris clone 1 18S ribosomal RNA gene' CCATTAGGTTGAGGGCACGCCTGCCTGGGCATCATGCCT-GTGTAAGCTCCGTGCTCAACTCCT-----TCTGGGT-GTTGTTCAGGGATGCGTGTAGAT 'gi|9717223|gb|AY004114.1| Bubbia comptonii clone 1 18S ribosomal RNA gene' CCATTAGGCTGAGGGCACGCCTGCCTGGGCATCATGCCC-GTGTAAGCTCCGTGCTCAACTCCT--TGTGGTGGGA-GTTGTTAGCGGATGCGTG--GAT 'gi|9717222|gb|AY004113.1| Exospermum stipitatum clone 1 18S ribosomal RNA gene' CCGTTACGTGGAGGGCACGCCTGCCTGGGCATCATGCCT-GTGTAAGCTCCGTGCTCAACTCTCCATGTGGTGGGT-GTTGTTCGTGGATGCGTG--GAT 'gi|9717221|gb|AY004112.1| Zygogynum balansae clone 1 18S ribosomal RNA gene' CCGTTAGGCTGAGGGCACGCCTGCCTGGGCATCATGCCCTGTGTAAGCTCCGTGCTCAACTCTCCATGTGGTGGGT-GTTGTTCGTGGATGCGTG--GAT 'gi|9717220|gb|AY004111.1| Zygogynum bicolor clone 1 18S ribosomal RNA gene' CCGTTAGGCTGAGGGCACGCCTGCCTGGGCATCATGCCCTGTGTAAGCTCCGTGCTCAACTCTCCATGTGGTGGGT-GTTGTTCGTGGATGCGTG--GAT ' Zygogynum acsmithii CLONE 2' CCATTAGGCTGAGGGCACGCCTGCCTGGGCATCATGCCCCGTGTAAGCTCCGTGCTCAACTCCT--TGTGCTGGGA-GTTGTTCACGGAAGC--GTGGAT 'Drimys winteri CLONE 1' CCATTAGGTTGAGGGCACGCCTGCCTGGGCATCATGCCTCGTGTAAGCTCCGTGCTCAACCCCT-----CGTGGGCGGTTGTTCGGGGATGC--GTAGAT [ 501 511 521 531 541 551 561 571 581 591 ] [ | | | | | | | | | | ] 'gi|9717237|gb|AY004128.1| Tasmannia lanceolata 18S ribosomal RNA gene' TGGCCACCCATGCGTTTGGGCGTGGAAGGCTTAAAA--TT--GAGCCCTTGGTGGCGCGCAGCACGATGAGTGGTGGTTGAAATCACATGCTCGGGTTCG 'gi|9717236|gb|AY004127.1| Tasmannia insipida clone 2 18S ribosomal RNA gene' TGGCCACCCATGCGTTTGGGCGTGGAAGGCTTAAAA--TT--GAGCCCTTGGTGGCGCGCAGCACGATGAGTGGTGGTTGAAATCACATGCTCGGGTTCG 'gi|9717235|gb|AY004126.1| Drimys winteri 18S ribosomal RNA gene' TGGCCACCCATGCGTCAGGGCGTGGTAGGCTTAAAA--TTGGGAGCCCTTGGGGGCGCGCAGCACGATGAGTGGTGGTTGAAGTCACATGCTCGTGCGCG 'gi|9717234|gb|AY004125.1| Pseudowintera colorata clone 2 18S ribosomal RNA gene' TGGCCACCCATGCGTTAGGGCGTGGTAGGCTTAAAA--TTGGGAGCCCTTGGGGGCGCGCAGCACGATGAGTGGTGGTTGAAATCACATGCTCGGGTTCG 'gi|9717233|gb|AY004124.1| Pseudowintera axillaris clone 2 18S ribosomal RNA gene' TGGCCACCCATGCGTTAGGGCGTGGTAGGCTTAAAA--TTGGGAGCCCTTGGGGGCGCGCAGCACGATGAGTGGTGGTTGAAATTACATGCTCGGGTTCG 'gi|9717232|gb|AY004123.1| Bubbia comptonii clone 2 18S ribosomal RNA gene' TGGCCACCCATGCGTTAGGGTGTGGTAGGCTTAAAA--TTGGGAGCCCTTGGGGGCGCGCAGCACGATCAGTGGTGGTTGAAATCACATGCCCGGGTTCG 'gi|9717231|gb|AY004122.1| Zygogynum acsmithii 18S ribosomal RNA gene' TGGCCACCCATGCGTTAGGGCGTGGTAGGCTTAAAA--TTGGGAGCCCTTGGGGGCGCGCAGCACGATGAGTGGTGGTTGAAATCACATGCCCGGGTTCG 'gi|9717230|gb|AY004121.1| Exospermum stipitatum clone 2 18S ribosomal RNA gene' TGGCCACCCATGCGTTAGGGCGTGGTAGGCTTAAAA--TTGGGAGCCCTTGGGGGCGCGCAGCACGATGAGTGGTGGTTGAAATCACATGCCCGGGTTCG 'gi|9717229|gb|AY004120.1| Zygogynum balansae clone 2 18S ribosomal RNA gene' TGGCCACCCATGCGTTAGGGCGTGGTAGGCTTAAAA--TTGAGAGCCCTTGGGGGCGCGCAGCACGATGAGTGGTGGTTGAAATCACATGCCCGGGTTCG 'gi|9717228|gb|AY004119.1| Zygogynum pancheri 18S ribosomal RNA gene' TGGCCACCCATGCGTTAGGGCGTGGTAGGCTTAAAAAATTGGGAGCCCTTGGGGGCGCGCAGCACGATGAGTGGTGGTTGAAATCACATGCCCGGGTTCG 'gi|9717227|gb|AY004118.1| Zygogynum bicolor clone 2 18S ribosomal RNA gene' TGGCCACCCATGCGTTAGGGCGTGGTAGGCTTAAAAAATTGGGAGCCCTTGGGGGCGCGCAGCACGATGAGTGGTGGTTGAAATCACATGCCCGGGTTCG 'gi|9717226|gb|AY004117.1| Tasmannia insipida clone 1 18S ribosomal RNA gene' TGGCCACCCATGCGTTTGGGCGTGGAAGGCTTAAAA--TT--GAGCCCTTGGTGGCGCGCAGCACGATGAGTGGTGGTTGAAATCACATGCTCGGGTTCG 'gi|9717225|gb|AY004116.1| Pseudowintera colorata clone 1 18S ribosomal RNA gene' TGGCCACCCATGCGTTAGGGCGTGGTAGGCTTAAAA--TTGGGAGCCCTTGGGGGCGCGCAGCACGATGAGTGGTGGTTGAAATCACATGCTCGGGTTCG 'gi|9717224|gb|AY004115.1| Pseudowintera axillaris clone 1 18S ribosomal RNA gene' TGGCCACCCATGCGTTAGGGCGTGGTAGGCTTAAAA--TTGGGAGCCCTTGGGGGCGCGCAGCACGATGAGTGGTGGTTGAAATCACATGCTCGGGTTCG 'gi|9717223|gb|AY004114.1| Bubbia comptonii clone 1 18S ribosomal RNA gene' TGGCCACCCATGCGTTAGGGTGTGGTAGGCTTAAAA--TTGGGAGCCCTTGGGGGCGCGCAGCACGATCAGTGGTGGTTGAAATCACATGCCCGGGTTCG 'gi|9717222|gb|AY004113.1| Exospermum stipitatum clone 1 18S ribosomal RNA gene' TGGCCACCCATGCGTTAGGGCGTGGTAGGCTTCAAA--TTGGGAGCCCTTGGGGGCGCGCAGCACGATGAGTGGTGGTTGAAATCACATGCCCGGGTTCG 'gi|9717221|gb|AY004112.1| Zygogynum balansae clone 1 18S ribosomal RNA gene' TGGCCACCCATGCGTTAGGGCGTGGTAGGCTTCAAA--TTGGGACGCCTTGGGGGCGCGCAGCACGATGAGTGGTGGTTGAAATCACATGCCCGGGTTCG 'gi|9717220|gb|AY004111.1| Zygogynum bicolor clone 1 18S ribosomal RNA gene' TGGCCACCCATGCGTTAGGGCGTGGTAGGCTTCAAA--TTGGGACGCCTTGGGGGCGCGCAGCACGATGAGTGGTGGTTGAAATCACATGCCCGGGTTCG ' Zygogynum acsmithii CLONE 2' TGGCCACCCATGCGTTAGGGCGTGGTAGGCTTAAAA--TTGGGAGCCCTTGGGGGCGCGCAGCACGATGAGTGGTGGTTGAAATCACATGCCCGGGTTCG 'Drimys winteri CLONE 1' TGGCCACCCATGCGTCAGGGCGTGGTAGGCTTAAAA--TTGGGAGCCCTTGGGGGCGCGCAGCACGATGAGTGGTGGTTGAAGTCACATGCTCGTGCGCG [ 601 611 621 631 641 651 661 671 681 691 ] [ | | | | | | | | | | ] 'gi|9717237|gb|AY004128.1| Tasmannia lanceolata 18S ribosomal RNA gene' GATGTCGTGTGTGTTG--C----ATTATTATCCGGG--TCAGAAACCCA-AGGTTGTCCTTCAAATTGGTTGTGTGTGATCCCAGGCCAGGCGGGGCACC 'gi|9717236|gb|AY004127.1| Tasmannia insipida clone 2 18S ribosomal RNA gene' GATGTCGTGTGCGTTG--CCCCCATTATTATCTGGGCCTCAGAAACCCA-AGGTTGTCCTTGAAATTGGTTGTGTGTGATCCCAGGCCAGGCGGGGCACC 'gi|9717235|gb|AY004126.1| Drimys winteri 18S ribosomal RNA gene' GATGTCGTGCGTGCTG--CCCCCATTATTATCCGGGCCTCAGAAACCCA-AGGCTGCCCTTGAAATTGCTCGTGTGTGATCCCAGGCCAGGCGGGGCACC 'gi|9717234|gb|AY004125.1| Pseudowintera colorata clone 2 18S ribosomal RNA gene' GATGTCGTGTGTGCTGTGCCCCCATTATTATCCGGGCCTAAGAAA------------CCTTGAAATTGCTTGTGTGTGATCCCAGGCCAGGCGGGGCACC 'gi|9717233|gb|AY004124.1| Pseudowintera axillaris clone 2 18S ribosomal RNA gene' GATGTCGTGTGTGCTGTGCCCCCATTATTATCCGGGCCTAAGAAACCCCAAGGTTGCCCTTGAAATTGCTTGTGTGTGATCCCAGGCCAGGCGGGGCACC 'gi|9717232|gb|AY004123.1| Bubbia comptonii clone 2 18S ribosomal RNA gene' GATGTCGTGTGTGCTG--CCCCCATTATTATCCGGGCCTAAGAAACCCA-AGGTTGCGCTTGAAACTGCTTGTGTGTGATCCCAGGCCAGGCGGGGCACC 'gi|9717231|gb|AY004122.1| Zygogynum acsmithii 18S ribosomal RNA gene' GATGTCGTGTGTGTTG--CCCCCATTACTATCCGGGCCTAAGAAACCCA-AGGTTGCGCTTGAAATTGCTTGTGTGTGATCCCAGGCCAGGCGGGGCACC 'gi|9717230|gb|AY004121.1| Exospermum stipitatum clone 2 18S ribosomal RNA gene' GATGTCGTGTGTGTTG--CCCCCATTACTATCCGGGCCTAAGAAACCCA-AGGTTGCGCTTGAAATTGCTTGTGTGTGATCCCAGGCCAGGCGGGGCACC 'gi|9717229|gb|AY004120.1| Zygogynum balansae clone 2 18S ribosomal RNA gene' GATGTCGTGTGTGTTG--CCCCCATCACTATCCGGGCCTAAGAAACCCA-AGGTTGCGCTTGAAATTGCTTGTGTGTGATCCCAGGCCAGGCGGGGCACC 'gi|9717228|gb|AY004119.1| Zygogynum pancheri 18S ribosomal RNA gene' GATGTCGTGTGTGTTG--CCCCCATCACTACCCGGGCCCAAGAAACCCA-AGGTTGCGCTTGAAATTGCTTGTGTGTGATCCCAGGCCAGGCGGGGCACC 'gi|9717227|gb|AY004118.1| Zygogynum bicolor clone 2 18S ribosomal RNA gene' GATGTCGTGTGTGTTG--CCCCCATCACTACCCGGGCCTAAGAAACCCA-AGGTTGCGCTTGAAATTGCTTGTGTGTGATCCCAGGCCAGGCGGGGCACC 'gi|9717226|gb|AY004117.1| Tasmannia insipida clone 1 18S ribosomal RNA gene' GATGTCGTGTGCGTTG--CCCCCATTATTATCTGGGCCTCAGAAACCCA-AGGTTGTCCTTGAAATTGGTTGTGTGTGATCCCAGGCCAGGCGGGGCACC 'gi|9717225|gb|AY004116.1| Pseudowintera colorata clone 1 18S ribosomal RNA gene' GATGTCGTGTGTGCTGTGCCCCCATTATTATCCGGGCCTAAGAAA------------CCTTGAAATTGCTTGTGTGTGATCCCAGGCCAGGCGGGGCACC 'gi|9717224|gb|AY004115.1| Pseudowintera axillaris clone 1 18S ribosomal RNA gene' GATGTCGTGTGTGCTGTGCCCCCATTATTATCCGGGCCTAAGAAACCCCAAGGTTGCCCTTGAAATTGCTTGTGTGTGATCCCAGGCCAGGCGGGGCACC 'gi|9717223|gb|AY004114.1| Bubbia comptonii clone 1 18S ribosomal RNA gene' GATGTCGTGTGTGCTG--CCCCCATTATTATCCGGGCCTAAGAAACCCA-AGGTTGCGCTTGAAACTGCTTGTGTGTGATCCCAGGCCAGGCGGGGCACC 'gi|9717222|gb|AY004113.1| Exospermum stipitatum clone 1 18S ribosomal RNA gene' GATGTCGTGTGTGTTG--CCCCCATTATTATCCGGCCCTAAGAAACCCA-AGGTTGCGCTTTCAATTGCTTGTGTGTGATCCCAGGCCAGGCGGGGCACC 'gi|9717221|gb|AY004112.1| Zygogynum balansae clone 1 18S ribosomal RNA gene' GATGTCGTGTGTGTTG--CCCCCATTATTATCCGGCCCTAAGAAACCCA-AGGTTGCGCTTTCAATTGCTTGTGTGTGATCCCAGGCCAGGCGGGGCACC 'gi|9717220|gb|AY004111.1| Zygogynum bicolor clone 1 18S ribosomal RNA gene' GATGTCGTGTGTGTTG--CCCCCATTATTATCCGGCCCTAAGAAACCCA-AGGTTGCGCTTTCAATTGCTTGTGTGTGATCCCAGGCCAGGCGGGGCACC ' Zygogynum acsmithii CLONE 2' GATGTCGTGTGTGTTG--CCCCCATTACTATCCGGGCCTAAGAAACCCA-AGGTTGCGCTTGAAATTGCTTGTGTGTGATCCCAGGCCAGGCGGGGCACC 'Drimys winteri CLONE 1' GATGTCGTGCGTGCTG--CCCCCATTATTATCCGGGCCTCAGAAACCCA-AGGCTGCCCTTGAAATTGCTCGTGTGTGATCCCAGGCCAGGCGGGGCACC [ 701 711 721 ] [ | | | ] 'gi|9717237|gb|AY004128.1| Tasmannia lanceolata 18S ribosomal RNA gene' CTGGAATTTAAGCATATCAATA 'gi|9717236|gb|AY004127.1| Tasmannia insipida clone 2 18S ribosomal RNA gene' CTGGAATTTAAGCATATCAATA 'gi|9717235|gb|AY004126.1| Drimys winteri 18S ribosomal RNA gene' CTGGAATTTAAGCATATCAATA 'gi|9717234|gb|AY004125.1| Pseudowintera colorata clone 2 18S ribosomal RNA gene' CTGGAATTTAAGCATATCAATA 'gi|9717233|gb|AY004124.1| Pseudowintera axillaris clone 2 18S ribosomal RNA gene' CTGGAATTTAAGCATATCAATA 'gi|9717232|gb|AY004123.1| Bubbia comptonii clone 2 18S ribosomal RNA gene' CTGGAATTTAAGCATATCAATA 'gi|9717231|gb|AY004122.1| Zygogynum acsmithii 18S ribosomal RNA gene' CTGGAATTTAAGCATATCAATA 'gi|9717230|gb|AY004121.1| Exospermum stipitatum clone 2 18S ribosomal RNA gene' CTGGAATTTAAGCATATCAATA 'gi|9717229|gb|AY004120.1| Zygogynum balansae clone 2 18S ribosomal RNA gene' CTGGAATTTAAGCATATCAATA 'gi|9717228|gb|AY004119.1| Zygogynum pancheri 18S ribosomal RNA gene' CTGGAATTTAAGCATATCAATA 'gi|9717227|gb|AY004118.1| Zygogynum bicolor clone 2 18S ribosomal RNA gene' CTGGAATTTAAGCATATCAATA 'gi|9717226|gb|AY004117.1| Tasmannia insipida clone 1 18S ribosomal RNA gene' CTGGAATTTAAGCATATCAATA 'gi|9717225|gb|AY004116.1| Pseudowintera colorata clone 1 18S ribosomal RNA gene' CTGGAATTTAAGCATATCAATA 'gi|9717224|gb|AY004115.1| Pseudowintera axillaris clone 1 18S ribosomal RNA gene' CTGGAATTTAAGCATATCAATA 'gi|9717223|gb|AY004114.1| Bubbia comptonii clone 1 18S ribosomal RNA gene' CTGGAATTTAAGCATATCAATA 'gi|9717222|gb|AY004113.1| Exospermum stipitatum clone 1 18S ribosomal RNA gene' CTGGAATTTAAGCATATCAATA 'gi|9717221|gb|AY004112.1| Zygogynum balansae clone 1 18S ribosomal RNA gene' CTGGAATTTAAGCATATCAATA 'gi|9717220|gb|AY004111.1| Zygogynum bicolor clone 1 18S ribosomal RNA gene' CTGGAATTTAAGCATATCAATA ' Zygogynum acsmithii CLONE 2' CTGGAATTTAAGCATATCAATA 'Drimys winteri CLONE 1' CTGGAATTTAAGCATATCAATA ; End; BEGIN ASSUMPTIONS; CHARSET ITS1 = 13-273; CHARSET 5.8s = 273-387; CHARSET ITS2 = 388-672; CHARSET 26s = 674-722; END; [! Likelihood settings from best-fit model (TrN+G) selected by hLRT in Modeltest 3.6 for entire data set. Use this model to construct the best possible tree. Includes 5.8S sequence. ] BEGIN PAUP; Lset Base=(0.2144 0.2593 0.3076) Nst=6 Rmat=(1.0000 2.1036 1.0000 1.0000 4.0503) Rates=gamma Shape=0.4140 Pinvar=0; END; [! Likelihood settings from best-fit model (TrN+G) selected by AIC in Modeltest 3.6 for ITS1+2 only. Use this for clock test and to estimate branch lengths for rate calculations. ] [! BEGIN PAUP; Lset Base=(0.1953 0.2722 0.3208) Nst=6 Rmat=(1.0000 2.2162 1.0000 1.0000 3.7403) Rates=gamma Shape=0.8471 Pinvar=0; END; ] Begin trees; Translate 1 gi|9717237|gb|AY004128.1|_Tasmannia_lanceolata_18S_ribosomal_RNA_gene, 2 gi|9717236|gb|AY004127.1|_Tasmannia_insipida_clone_2_18S_ribosomal_RNA_gene, 3 gi|9717235|gb|AY004126.1|_Drimys_winteri_18S_ribosomal_RNA_gene, 4 gi|9717234|gb|AY004125.1|_Pseudowintera_colorata_clone_2_18S_ribosomal_RNA_gene, 5 gi|9717233|gb|AY004124.1|_Pseudowintera_axillaris_clone_2_18S_ribosomal_RNA_gene, 6 gi|9717232|gb|AY004123.1|_Bubbia_comptonii_clone_2_18S_ribosomal_RNA_gene, 7 gi|9717231|gb|AY004122.1|_Zygogynum_acsmithii_18S_ribosomal_RNA_gene, 8 gi|9717230|gb|AY004121.1|_Exospermum_stipitatum_clone_2_18S_ribosomal_RNA_gene, 9 gi|9717229|gb|AY004120.1|_Zygogynum_balansae_clone_2_18S_ribosomal_RNA_gene, 10 gi|9717228|gb|AY004119.1|_Zygogynum_pancheri_18S_ribosomal_RNA_gene, 11 gi|9717227|gb|AY004118.1|_Zygogynum_bicolor_clone_2_18S_ribosomal_RNA_gene, 12 gi|9717226|gb|AY004117.1|_Tasmannia_insipida_clone_1_18S_ribosomal_RNA_gene, 13 gi|9717225|gb|AY004116.1|_Pseudowintera_colorata_clone_1_18S_ribosomal_RNA_gene, 14 gi|9717224|gb|AY004115.1|_Pseudowintera_axillaris_clone_1_18S_ribosomal_RNA_gene, 15 gi|9717223|gb|AY004114.1|_Bubbia_comptonii_clone_1_18S_ribosomal_RNA_gene, 16 gi|9717222|gb|AY004113.1|_Exospermum_stipitatum_clone_1_18S_ribosomal_RNA_gene, 17 gi|9717221|gb|AY004112.1|_Zygogynum_balansae_clone_1_18S_ribosomal_RNA_gene, 18 gi|9717220|gb|AY004111.1|_Zygogynum_bicolor_clone_1_18S_ribosomal_RNA_gene, 19 _Zygogynum_acsmithii_CLONE_2, 20 Drimys_winteri_CLONE_1 ; tree PAUP_1 = [&R] ((1:0.013914,(2:0.004359,12:0):0.006991):0,((3:0,20:0):0.041716,(((4:0.001469,13:0):0.001518,(5:0.001450,14:0):0.003301):0.010553,((6:0.010266,((7:0,19:0.001438):0.002895,8:0.001448,(9:0.007318,(10:0.001437,11:0):0.001446):0.001440):0.004832):0.005643,(15:0.022968,(16:0.005797,(17:0.002895,18:0):0.003122):0.015149):0.012224):0.016367):0.005085):0.026708); End; [ The following section was used to run the R8S program for rate smoothing. ] Begin trees; [The first tree contains ML branchlengths. The second tree contains parsiomony branchlengths. Branches with length zero have been removed from both trees: prune gi|9717237|gb|AY004128.1|_Tasmannia_lanceolata_18S_ribosomal_RNA_gene gi|9717236|gb|AY004127.1|_Tasmannia_insipida_clone_2_18S_ribosomal_RNA_gene gi|9717226|gb|AY004117.1|_Tasmannia_insipida_clone_1_18S_ribosomal_RNA_gene;] tree its.winteraceae.mlbrlens = [&R] ((gi|9717235|gb|AY004126.1|_Drimys_winteri_18S_ribosomal_RNA_gene:0.041716,((gi|9717234|gb|AY004125.1|_Pseudowintera_colorata_clone_2_18S_ribosomal_RNA_gene:0.002987,gi|9717233|gb|AY004124.1|_Pseudowintera_axillaris_clone_2_18S_ribosomal_RNA_gene:0.004751):0.010553,((gi|9717232|gb|AY004123.1|_Bubbia_comptonii_clone_2_18S_ribosomal_RNA_gene:0.010266,(gi|9717230|gb|AY004121.1|_Exospermum_stipitatum_clone_2_18S_ribosomal_RNA_gene:0.001448,(gi|9717229|gb|AY004120.1|_Zygogynum_balansae_clone_2_18S_ribosomal_RNA_gene:0.007318,gi|9717228|gb|AY004119.1|_Zygogynum_pancheri_18S_ribosomal_RNA_gene:0.002883):0.001440,_Zygogynum_acsmithii_CLONE_2:0.004333):0.004832):0.005643,(gi|9717223|gb|AY004114.1|_Bubbia_comptonii_clone_1_18S_ribosomal_RNA_gene:0.022968,(gi|9717222|gb|AY004113.1|_Exospermum_stipitatum_clone_1_18S_ribosomal_RNA_gene:0.005797,gi|9717221|gb|AY004112.1|_Zygogynum_balansae_clone_1_18S_ribosomal_RNA_gene:0.006017):0.015149):0.012224):0.016367):0.005085):0.026708); [tree its.winteraceae.parsbrlens = [&R] ((gi|9717235|gb|AY004126.1|_Drimys_winteri_18S_ribosomal_RNA_gene:24,((gi|9717234|gb|AY004125.1|_Pseudowintera_colorata_clone_2_18S_ribosomal_RNA_gene:2,(gi|9717233|gb|AY004124.1|_Pseudowintera_axillaris_clone_2_18S_ribosomal_RNA_gene:1,gi|9717224|gb|AY004115.1|_Pseudowintera_axillaris_clone_1_18S_ribosomal_RNA_gene:0):2):9,((gi|9717232|gb|AY004123.1|_Bubbia_comptonii_clone_2_18S_ribosomal_RNA_gene:6,(gi|9717230|gb|AY004121.1|_Exospermum_stipitatum_clone_2_18S_ribosomal_RNA_gene:1,(gi|9717229|gb|AY004120.1|_Zygogynum_balansae_clone_2_18S_ribosomal_RNA_gene:5,gi|9717228|gb|AY004119.1|_Zygogynum_pancheri_18S_ribosomal_RNA_gene:2):1,_Zygogynum_acsmithii_CLONE_2:3):4):3,(gi|9717223|gb|AY004114.1|_Bubbia_comptonii_clone_1_18S_ribosomal_RNA_gene:14,(gi|9717222|gb|AY004113.1|_Exospermum_stipitatum_clone_1_18S_ribosomal_RNA_gene:4,(gi|9717221|gb|AY004112.1|_Zygogynum_balansae_clone_1_18S_ribosomal_RNA_gene:2,gi|9717220|gb|AY004111.1|_Zygogynum_bicolor_clone_1_18S_ribosomal_RNA_gene:0):2):10):8):9):6):18);] End; begin r8s; blformat lengths=total nsites=558 ultrametric=no; [This is the length of ITS1 + ITS2] MRCA pseudowintera gi|9717234|gb|AY004125.1|_Pseudowintera_colorata_clone_2_18S_ribosomal_RNA_gene gi|9717233|gb|AY004124.1|_Pseudowintera_axillaris_clone_2_18S_ribosomal_RNA_gene [gi|9717225|gb|AY004116.1|_Pseudowintera_colorata_clone_1_18S_ribosomal_RNA_gene] gi|9717224|gb|AY004115.1|_Pseudowintera_axillaris_clone_1_18S_ribosomal_RNA_gene gi|9717232|gb|AY004123.1|_Bubbia_comptonii_clone_2_18S_ribosomal_RNA_gene [gi|9717231|gb|AY004122.1|_Zygogynum_acsmithii_18S_ribosomal_RNA_gene] gi|9717230|gb|AY004121.1|_Exospermum_stipitatum_clone_2_18S_ribosomal_RNA_gene gi|9717229|gb|AY004120.1|_Zygogynum_balansae_clone_2_18S_ribosomal_RNA_gene gi|9717228|gb|AY004119.1|_Zygogynum_pancheri_18S_ribosomal_RNA_gene [gi|9717227|gb|AY004118.1|_Zygogynum_bicolor_clone_2_18S_ribosomal_RNA_gene] gi|9717223|gb|AY004114.1|_Bubbia_comptonii_clone_1_18S_ribosomal_RNA_gene gi|9717222|gb|AY004113.1|_Exospermum_stipitatum_clone_1_18S_ribosomal_RNA_gene gi|9717221|gb|AY004112.1|_Zygogynum_balansae_clone_1_18S_ribosomal_RNA_gene gi|9717220|gb|AY004111.1|_Zygogynum_bicolor_clone_1_18S_ribosomal_RNA_gene Zygogynum_acsmithii_CLONE_2; [note zero length tips removed] fixage taxon=pseudowintera age=80 [range50-80]; set smoothing=32000 checkgradient=yes showgradient=yes; divtime method=pl algorithm=tn crossv=yes cvstart=4 cvinc=0.25 cvnum=4; describe plot=phylogram; describe plot=ratogram; end;