Supporting information for Liu et al. (2003) Proc. Natl. Acad. Sci. USA, 10.1073/pnas.0630387100
Fig. 8.
Activation (A) and repression (B) of different functional groups of DEIRA genes. Designations of functional groups (from the COG database): J, translation, ribosomal structure and biogenesis; K, transcription; L, DNA replication, recombination, and repair; D, cell division and chromosome partitioning; O, posttranslational modification, protein turnover, chaperones; M, cell envelope biogenesis, outer membrane; N, cell motility and secretion; P, inorganic ion transport and metabolism; T, signal transduction mechanisms; C, energy production and conversion; G, carbohydrate transport and metabolism; E, amino acid transport and metabolism; F, nucleotide transport and metabolism; H, coenzyme metabolism; I, lipid metabolism; Q, secondary metabolites biosynthesis, transport, and catabolism; R, general function prediction only; S, function unknown; STRESS, genes involved in stress response, based on previous analyses of the DEIRA genome [Makarova, K. S., Aravind, L., Wolf, Y. I., Tatusov, R. L., Minton, K. W., Koonin, E. V. & Daly, M. J. (2001) Microbiol. Mol. Biol. Rev. 65, 44–79].