The Clp1 Protein Is Required for Clamp Formation and Pathogenic Development of Ustilago maydis -- Scherer et al., 10.1105/tpc.106.043521 -- THE PLANT CELL

The Clp1 Protein Is Required for Clamp Formation and Pathogenic Development of Ustilago maydis
Plant Cell Scherer et al. 10.1105/tpc.106.043521

Supplemental Data

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Supplemental Figure 1 - Alignment of Clp1 to predicted proteins from Basidiomycetes. Shown is the alignment of the deduced U. maydis Clp1 protein sequence to Clp1 from C. cinerea (Cc Clp1, accession number BAB20422) and predicted proteins from other Basidiomycetes: C. cinerea (Cc 11541, autocalled gene CC1G_11451.1 at http://www.broad.mit.edu/annotation/fungi/coprinus_cinereus/), P. chrysosporium (Pc 3784 and Pc 3298, protein id numbers 3784 and 3298, at http://genome.jgi-psf.org/cgi-bin/searchGM?db=Phchr1) and C. neoformans (Cn 03617, autocalled gene CNAG_03617.1 at http://www.broad.mit.edu/annotation/fungi/ cryptococcus_neoformans/). Numbers indicate the amino acid positions of the respective protein; identical amino acids are boxed, amino acids with similar hydrophobic properties according to the Goldman, Engelman and Steitz (GES) algorithm (Engelman et al., 1986) are shaded in grey. Identical amino acids of the respective proteins to the U. maydis Clp1 protein are as follows: C. cinerea Clp1: 21.5 % of 395 amino acids; Pc 3784: 26.2 % of 290 amino acids; Cn 03617: 26.2 % of 298 amino acids; Cc 11451: 24.8 % of 262 amino acids; Pc 3298: 24.8 % of 210 amino acids.
Engelman, D.M., Steitz, T.A., and Goldman, A. (1986). Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins. Annu Rev Biophys Biophys Chem 15, 321-353.