Narendran et al. 10.1073/pnas.0607380103. |
Table 1. Oligonucleotide primers and hybridization probes
Description | Sequence (5¢-3¢ ) |
Nested PCR | |
5¢ external proinsulin primer | GAAGAGGCCATCAAGCAGATCACT |
5¢ internal proinsulin primer | ACCTGACCCAGCCGCAGCC |
3¢ internal proinsulin primer | AGCTGGTAGAGGGAGCAGATG |
5¢ external GAD65 primer | TGCTCCAAAGTGGATGTCAACTA |
3¢ external GAD65 primer | ATGTTAGTATTTGCTGTTGATGTCA |
5¢ internal GAD65 primer | CTTTGGCGTTTCTGCAAGAT |
3¢ internal GAD65 primer | AGTTGTTTGGCAATGCATCA |
5¢ external 21-OH primer | ACCTGTCCTTGGGAGACTAC |
3¢ external 21-OH primer | TAGGCAGGCATTAAGTTGTCG |
5¢ internal 21-OH primer | AGCCCACAAGAAGCTCACC |
3¢ internal 21-OH primer | TGATCTTGTCTCCGAAGGTG |
Real-Time (Lightcycler) PCR | |
5¢ native proinsulin primer | AGAGGCCATCAAGCACATCACT |
3¢ native proinsulin primer | GGGTGTGTAGAAGAAGCCTCGT |
5¢ splice variant proinsulin primer | TGCGTCAGATCACTGTCCTTC |
FL-proinsulin hybridization probe | AACCAACACCTGTGCGGCTCAC |
LC Red 640-proinsulin hybridization probe | CCTGGTGGAAGCTCTCTACCTAGTGTGC |
5¢ 21-OH primer | ACACGGCCCAGCAGCA |
3¢ 21-OH primer | GGAAGCGATCAGGCCAGAA |
FL-21-OH hybridization probe | GGTTCGGAATGATGACTGTGCCC |
LC Red 640-21-OH hybridization probe | CAGGGATGTCGTAGCCGGAGAT |
5¢ PBGD primer | GCTGCAACGGCGGAA |
3¢ PBGD primer | CCTGTGGTGGACATAGCAATGATT |
FL-PBGD hybridization probe | TCGCATACAGACGGACAGTGTGGTG |
LC Red 640-PBGD hybridization probe | CAACATTGAAAGCCTCGTACCCTGG |
Table 2. si RNA sequences
siRNA no. | DNA sequence |
1 | Sense gcucucuaccuagugugcgTT |
| Antisense cgcacacuagguagagagcTT |
2 | Sense ggcuucuucuacacacccaTT |
| Antisense uggguguguagaagaagccTC |
3 | Sense gccuuugugaaccaacaccTT |
| Antisense gguguugguucacaaaggcTG |
1 scrambled (negative control) | Sense cgucgucguacucauggucTT |
| Antisense gaccaugaguacgacgacgTT |