Supplementary material for Moran et al. (1999) Proc. Natl. Acad. Sci. USA 96 (19), 10699-10704.
Table 2.
Parameters of dimeric GCN4-p2¢ foldingSpecies | Equilibrium | Kinetics | ||||||
-D G° | m ° | R T ln kf | R T ln ku | - mf | mu | -D G° =D Gu-DGf | m ° =mu - mf | |
Wild type | 10.5 ± 0.1 | 1.8 ± 0.1 | 1.29 ± 0.05 | -2.53 ± 0.12 | 0.93 ± 0.04 | 0.72 ± 0.03 | 10.2 ± 0.1 | 1.6 ± 0.1 |
D7G | 8.7 ± 0.2 | 1.8 ± 0.1 | 1.10 ± 0.09 | -1.24 ± 0.04 | 0.89 ± 0.08 | 0.72 ± 0.01 | 8.7 ± 0.1 | 1.5 ± 0.1 |
pD7A | 9.4 ± 0.1 | 1.6 ± 0.1 | 1.16 ± 0.08 | -2.4 ± 0.1 | 0.75 ± 0.07 | 0.71 ± 0.04 | 9.9 ± 0.2 | 1.5 ± 0.1 |
S14G | 8.4 ± 0.1 | 1.6 ± 0.1 | 1.15 ± 0.12 | -1.47 ± 0.04 | 0.90 ± 0.09 | 0.61 ± 0.01 | 9.0 ± 0.1 | 1.5 ± 0.1 |
S14A | 10.6 ± 0.6 | 1.7 ± 0.2 | 1.43 ± 0.05 | -3.15 ± 0.10 | 0.95 ± 0.03 | 0.78 ± 0.03 | 10.9 ± 0.1 | 1.7 ± 0.04 |
A24G | 8.5 ± 0.2 | 2.0 ± 0.1 | 0.33 ± 0.11 | -1.05 ± 0.05 | 0.60 ± 0.13 | 0.85 ± 0.016 | 7.8 ± 0.1 | 1.45 ± 0.13 |
AAA | 11.3 ± .05 | 1.89 ± .02 | 1.70 ± 0.05 | -2.54 ± 0.13 | 1.12 ± 0.03 | 0.69 ± 0.03 | 10.6 ± 0.1 | 1.8 ± 0.1 |
GGG | 5.97 ± 0.02 | 1.95* | ND | -0.31 ± 0.18 | ND | 0.86 ± 0.06 | ND | ND |
TTT | 9.00 ± 0.02 | 2.13 ± 0.01 | 0.54 ± 0.10 | -2.03 ± 0.14 | 1.17 ± 0.12 | 0.87 ± 0.04 | 8.96 ± 0.17 | 2.04 ± 0.13 |
AAG | 9.34 ± 0.01 | 1.99 ± 0.01 | 1.28 ± 0.08 | -1.48 ± 0.06 | 0.95 ± 0.06 | 0.96 ± 0.02 | 9.2 ± 0.1 | 1.91 ± 0.06 |
All values extrapolated to zero denaturant concentration. The DG° values are referenced to 1 M standard state peptide concentration. Units of DG° and RT are kcal/mol. Units of m are kcal/mol per M. Observed second-order folding rates referenced to 5.5 mM peptide concentration. ND, not determined.
*Obtained from equilibrium denaturation measurement conducted in 5% 2,2,2-trifluroethanol.
Measured in 5% 2,2,2-trifluroethanol, which has been shown to have no effect on unfolding rates [Kentsis, A. & Sosnick, T. R. (1998) Biochemistry 37, 14613-14622].