1 ARCHAEA 5672 seqs 1.1 EURYARCHAEOTA 3872 seqs 1.1.1 METHANOCOCCALES 322 seqs 1.1.1.1 MC.JANNASCHII_GROUP 291 seqs 1.1.1.1.001 OTU 5 seqs prokMSA_id:000027 AJ236467 clone ST1-16. prokMSA_id:000028 AJ236483 clone S15-2. prokMSA_id:000029 AJ236485 clone S15-4. prokMSA_id:000030 AJ236487 clone S15-6. prokMSA_id:000031 AJ236515 clone S30-7. 1.1.1.1.002 OTU 2 seqs prokMSA_id:070441 AF220345 Archaeal str. vp183 prokMSA_id:000026 M59128 Methanococcus thermolithotrophicus str. SN-1 DSM 2095 . 1.1.1.1.004 OTU 1 seq prokMSA_id:000021 AB019743 clone pMC2A5. 1.1.1.1.007 OTU 1 seq prokMSA_id:000018 AJ227955 clone ABS12. 1.1.1.1.009 OTU 27 seqs prokMSA_id:084909 AB095112 clone:pCIRA-A prokMSA_id:084604 AB095117 clone:pCIRA-G prokMSA_id:085669 AB095123 clone:pCIRA-M prokMSA_id:085182 AB095159 Methanotorris formicicum prokMSA_id:084162 AB095161 Methanocaldococcus sp. Mc-2-70 prokMSA_id:083710 AB095162 Methanocaldococcus sp. Mc-2-85 prokMSA_id:083216 AB095164 Methanocaldococcus sp. Mc-365-85 prokMSA_id:085672 AB095165 Methanotorris sp. Mc-I-70 prokMSA_id:082884 AB095166 Methanocaldococcus sp. Mc-I-85 prokMSA_id:086501 AB095168 Methanocaldococcus sp. Mc-S-85 prokMSA_id:000020 AF025822 Methanococcus infernus str. ME DSM 11812 . prokMSA_id:000017 AF051404 Methanocaldococcus vulcanius str. M7. prokMSA_id:000016 AF056938 Methanocaldococcus fervens str. AG86 DSM 4213 . prokMSA_id:037156 AF355922 33-P62A98 prokMSA_id:030505 AF355923 33-P104A98 prokMSA_id:017926 AF355926 33-P57A99 prokMSA_id:068332 AF356630 clone G26_C46 prokMSA_id:068331 AF356633 clone G26_C50 prokMSA_id:068333 AF356634 clone G26_C51 prokMSA_id:068330 AF356636 clone G26_C63 prokMSA_id:070924 AF356638 clone G26_C82 prokMSA_id:063633 AF526989 clone pEPR809 prokMSA_id:063631 AF526990 clone pEPR171 prokMSA_id:081740 AF547621 Methanocaldococcus indiensis prokMSA_id:079409 AJ431229 Methanococcus sp. Dex60a43 strain Dex60a43 prokMSA_id:000001 L77117 Methanococcus jannaschii = . prokMSA_id:000005 L77117 Methanococcus jannaschii =rrnB . 1.1.1.1.010 OTU 9 seqs prokMSA_id:000015 AB019739 clone pMC2A10. prokMSA_id:041367 AB052985 pPACMA-P prokMSA_id:030970 AB052990 pPACMA-W prokMSA_id:000014 AF068820 clone VC2.1 Arc13. prokMSA_id:056356 AF356635 clone G26_C56 prokMSA_id:068328 AF356637 clone G26_C73 prokMSA_id:063654 AF526961 clone pEPR707 prokMSA_id:055306 AF526962 clone pEPR719 prokMSA_id:063650 AF526965 clone pEPR193 1.1.1.1.011 OTU 1 seq prokMSA_id:000013 AF068817 clone VC2.1 Arc6. 1.1.1.1.013 OTU 1 seq prokMSA_id:000007 AB019734 clone pMC2A384. 1.1.1.1.014 OTU 1 seq prokMSA_id:000006 Y18092 clone Rot20. 1.1.1.1.015 OTU 1 seq prokMSA_id:000004 AB019749 clone pISA18. 1.1.1.1.016 OTU 1 seq prokMSA_id:000002 AJ227954 clone ABS9. 1.1.1.1.017 OTU 4 seqs prokMSA_id:047755 D88486 SWY prokMSA_id:044071 D88487 SW9 prokMSA_id:017485 D88488 SW3 prokMSA_id:018323 D88489 SC4 1.1.1.1.018 OTU 1 seq prokMSA_id:017950 Y18089 archeobacteria Clone Rot13 1.1.1.1.020 OTU 1 seq prokMSA_id:020800 AF355814 33-FL18A98 1.1.1.1.021 OTU 2 seqs prokMSA_id:056687 AY166004 clone FZ2aA11 prokMSA_id:079082 AY182134 clone FZ3bA23 1.1.1.1.022 OTU 2 seqs prokMSA_id:024918 AF290516 marine AEGEAN_50 prokMSA_id:083796 AY225430 clone AFRICA_2/12-25 1.1.1.1.023 OTU 1 seq prokMSA_id:059078 AJ294863 19b-30 clone 19b-30 1.1.1.1.024 OTU 1 seq prokMSA_id:026100 AB050209 SAGMA-E 1.1.1.1.025 OTU 1 seq prokMSA_id:027504 AF424534 euryarchaeote MERTZ_21CM_64 1.1.1.1.026 OTU 1 seq prokMSA_id:028567 AF355880 33-FL31A00 1.1.1.1.027 OTU 1 seq prokMSA_id:029288 AJ227951 archaebacteria clone ABS3 1.1.1.1.028 OTU 1 seq prokMSA_id:029806 D88485 SC6 1.1.1.1.029 OTU 1 seq prokMSA_id:032096 AF402988 clone archaeap14 1.1.1.1.030 OTU 1 seq prokMSA_id:033927 AF224869 clone Car154fc 1.1.1.1.031 OTU 5 seqs prokMSA_id:063668 AF526946 clone pEPR839 prokMSA_id:063665 AF526947 clone pEPR866 prokMSA_id:063664 AF526948 clone pEPR895 prokMSA_id:056571 AF527006 clone pEPR596 prokMSA_id:063610 AF527007 clone pEPR597 1.1.1.1.032 OTU 1 seq prokMSA_id:049153 D88480 SC2 1.1.1.1.033 OTU 1 seq prokMSA_id:052158 AF424536 euryarchaeote MERTZ_21CM_297 1.1.1.1.034 OTU 1 seq prokMSA_id:052417 D88481 SW14 1.1.1.1.037 OTU 12 seqs prokMSA_id:056779 AY165981 clone FZ1aA17 prokMSA_id:056770 AY165990 clone FZ1aA158 prokMSA_id:056749 AY166010 clone FZ2bA26 prokMSA_id:056742 AY166012 clone FZ2bA42 prokMSA_id:056738 AY166013 clone FZ2bA43 prokMSA_id:056741 AY166018 clone FZ2bA63 prokMSA_id:056734 AY166020 clone FZ2bA105 prokMSA_id:092182 AY354112 clone pIR3AB02 prokMSA_id:092872 AY354115 clone pIR3AG03 prokMSA_id:092947 AY354116 clone pIR3AA01 prokMSA_id:092677 AY354119 clone pIR3AF06 prokMSA_id:092202 AY354123 clone pIR3AG08 1.1.1.1.038 OTU 1 seq prokMSA_id:054381 AY063679 clone RS0-24 1.1.1.1.039 OTU 1 seq prokMSA_id:062874 AB077230 euryarchaeote clone:KuA20 1.1.1.1.040 OTU 1 seq prokMSA_id:062878 AB077228 euryarchaeote clone:KuA18 1.1.1.1.041 OTU 1 seq prokMSA_id:062880 AB077227 euryarchaeote clone:KuA17 1.1.1.1.042 OTU 5 seqs prokMSA_id:063669 AF526943 clone pEPR731 prokMSA_id:063666 AF526944 clone pEPR824 prokMSA_id:063667 AF526945 clone pEPR802 prokMSA_id:063662 AF526950 clone pEPR758 prokMSA_id:063609 AF527009 clone pEPR599 1.1.1.1.043 OTU 1 seq prokMSA_id:063653 AF526959 clone pEPR119 1.1.1.1.044 OTU 1 seq prokMSA_id:073906 AB050210 SAGMA-F 1.1.1.1.046 OTU 39 seqs prokMSA_id:048249 AB057722 Methanothermococcus okinawensis prokMSA_id:069255 AB072726 clone:pHAuA-43 prokMSA_id:086495 AB095116 clone:pCIRA-F prokMSA_id:083616 AB095120 clone:pCIRA-J prokMSA_id:085515 AB095132 clone:pCIRA-W prokMSA_id:083925 AB095158 Methanothermococcus sp. Mc-1-55 prokMSA_id:082588 AB095160 Methanocaldococcus sp. Mc-1-85 prokMSA_id:084325 AB095167 Methanotorris sp. Mc-S-70 prokMSA_id:051255 AF355881 33-FL15A99 prokMSA_id:028395 AF355882 33-FL13A99 prokMSA_id:054263 AF355883 33-FL4A99 prokMSA_id:030629 AF355884 33-FL7A99 prokMSA_id:054378 AF355885 33-FL36A99 prokMSA_id:020411 AF355886 33-FL38A99 prokMSA_id:035155 AF355887 33-FL45A99 prokMSA_id:026022 AF355888 33-FL49A99 prokMSA_id:031815 AF355889 33-FL56A99 prokMSA_id:032049 AF355890 33-FL120A99 prokMSA_id:040049 AF355891 33-FL128A99 prokMSA_id:035603 AF355892 33-FL58A99 prokMSA_id:045724 AF355893 33-FL109A99 prokMSA_id:035710 AF355894 33-FL70A99 prokMSA_id:030679 AF355895 33-FL84A99 prokMSA_id:028697 AF355899 33-P114A98 prokMSA_id:034966 AF355900 33-P123A98 prokMSA_id:031241 AF355902 33-P111A99 prokMSA_id:021809 AF355903 33-P15A99 prokMSA_id:018900 AF355904 33-P44A99 prokMSA_id:047089 AF355905 33-P55A99 prokMSA_id:041928 AF355906 33-P88A99 prokMSA_id:022954 AF355910 33-FL71A99 prokMSA_id:027637 AF355913 33-P132A98 prokMSA_id:034850 AF355917 33-P63A00 prokMSA_id:040970 AF355918 33-P70A00 prokMSA_id:031457 AF355919 33-P57A00 prokMSA_id:052459 AF355920 33-P86A00 prokMSA_id:073911 AF356628 clone G26_C5 prokMSA_id:069745 AF356629 clone G26_C45 prokMSA_id:069659 AF356632 clone G26_C49 1.1.1.1.048 OTU 16 seqs prokMSA_id:000010 AF052944 clone TS10C294. prokMSA_id:000019 AF052950 clone GIN492. prokMSA_id:000023 AF052951 clone FF619. prokMSA_id:000008 AF121986 str. DCM6515. prokMSA_id:000009 AF121990 str. DCM65231. prokMSA_id:000022 AF121996 str. DCM865. prokMSA_id:017623 AF290523 marine AEGEAN_63 prokMSA_id:032784 AF290524 marine AEGEAN_64 prokMSA_id:020230 AF355836 33-FL25A00 prokMSA_id:028715 AF355856 33-FL24A00 prokMSA_id:033866 AF355857 33-P39A00 prokMSA_id:083686 AY225421 clone AFRICA_1/1-3 prokMSA_id:084421 AY225422 clone AFRICA_1/1-4 prokMSA_id:085673 AY225424 clone AFRICA_1/6-10 prokMSA_id:082815 AY225429 clone AFRICA_2/12-24 prokMSA_id:086529 AY225435 clone AFRICA_3/19-8 1.1.1.1.049 OTU 1 seq prokMSA_id:082973 AB095138 clone:pCIRA-13 1.1.1.1.050 OTU 1 seq prokMSA_id:083196 AY226342 clone ABBA-113 1.1.1.1.051 OTU 1 seq prokMSA_id:084094 AB095118 clone:pCIRA-H 1.1.1.1.052 OTU 1 seq prokMSA_id:085747 AB095126 clone:pCIRA-P 1.1.1.1.053 OTU 2 seqs prokMSA_id:089415 AY245465 clone ML23_ANME9 prokMSA_id:090590 AY245470 clone ML28_ANME9 1.1.1.1.054 OTU 1 seq prokMSA_id:090322 AY245468 clone ML28_ANME2 1.1.1.1.055 OTU 1 seq prokMSA_id:090675 AY245469 clone ML28_ANME8 1.1.1.1.056 OTU 1 seq prokMSA_id:092623 AY354124 clone pIR3AG09 1.1.1.1.057 OTU 1 seq prokMSA_id:093054 AY341278 ZAR119 1.1.1.1.058 OTU 2 seqs prokMSA_id:094155 AB119604 euryarchaeote clone:ESYB48 prokMSA_id:093191 AB119625 euryarchaeote clone:ESYB69 1.1.1.1.059 OTU 1 seq prokMSA_id:093263 AB119607 euryarchaeote clone:ESYB51 1.1.1.1.060 OTU 1 seq prokMSA_id:093267 AB119606 euryarchaeote clone:ESYB50 1.1.1.1.061 OTU 1 seq prokMSA_id:093325 AB119580 euryarchaeote clone:ESYB24 1.1.1.1.062 OTU 1 seq prokMSA_id:093351 AB119605 euryarchaeote clone:ESYB49 1.1.1.1.063 OTU 1 seq prokMSA_id:093402 AB119626 euryarchaeote clone:ESYB70 1.1.1.1.064 OTU 1 seq prokMSA_id:093480 AB119624 euryarchaeote clone:ESYB68 1.1.1.1.065 OTU 1 seq prokMSA_id:093489 AB119603 euryarchaeote clone:ESYB47 1.1.1.1.066 OTU 1 seq prokMSA_id:093596 AB119608 euryarchaeote clone:ESYB52 1.1.1.1.067 OTU 1 seq prokMSA_id:093635 AB119629 euryarchaeote clone:ESYB73 1.1.1.1.068 OTU 1 seq prokMSA_id:093646 AB119564 euryarchaeote clone:ESYB8 1.1.1.1.069 OTU 2 seqs prokMSA_id:093817 AB119601 euryarchaeote clone:ESYB45 prokMSA_id:094152 AB119602 euryarchaeote clone:ESYB46 1.1.1.1.070 OTU 1 seq prokMSA_id:093908 AB119583 euryarchaeote clone:ESYB27 1.1.1.1.071 OTU 1 seq prokMSA_id:094013 AB119623 euryarchaeote clone:ESYB67 1.1.1.1.072 OTU 1 seq prokMSA_id:094078 AB119627 euryarchaeote clone:ESYB71 1.1.1.1.073 OTU 1 seq prokMSA_id:094090 AB119581 euryarchaeote clone:ESYB25 1.1.1.1.074 OTU 1 seq prokMSA_id:094257 AB119622 euryarchaeote clone:ESYB66 1.1.1.1.075 OTU 1 seq prokMSA_id:094276 AB119628 euryarchaeote clone:ESYB72 1.1.1.1.076 OTU 2 seqs prokMSA_id:098811 AB107818 clone:TN-5 prokMSA_id:095549 AB107820 clone:TN-7 1.1.1.1.077 OTU 1 seq prokMSA_id:098561 AB107842 clone:SJ-9 1.1.1.1.999 poor quality 104 seqs prokMSA_id:000012 AB007315 clone pUWA9. prokMSA_id:029225 AB049033 pPCA7.6 prokMSA_id:036318 AB049034 pPCA7.13 prokMSA_id:018673 AB049035 pPCA7.17 prokMSA_id:044303 AB049036 pPCA7.34 prokMSA_id:055444 AB077229 euryarchaeote clone:KuA19 prokMSA_id:093942 AB119562 euryarchaeote clone:ESYB6 prokMSA_id:093836 AB119563 euryarchaeote clone:ESYB7 prokMSA_id:093724 AB119565 euryarchaeote clone:ESYB9 prokMSA_id:093257 AB119586 euryarchaeote clone:ESYB30 prokMSA_id:094050 AB119587 euryarchaeote clone:ESYB31 prokMSA_id:093209 AB119588 euryarchaeote clone:ESYB32 prokMSA_id:093968 AB119589 euryarchaeote clone:ESYB33 prokMSA_id:093406 AB119590 euryarchaeote clone:ESYB34 prokMSA_id:093840 AB119591 euryarchaeote clone:ESYB35 prokMSA_id:093249 AB119592 euryarchaeote clone:ESYB36 prokMSA_id:093801 AB119593 euryarchaeote clone:ESYB37 prokMSA_id:093911 AB119594 euryarchaeote clone:ESYB38 prokMSA_id:094240 AB119595 euryarchaeote clone:ESYB39 prokMSA_id:093430 AB119597 euryarchaeote clone:ESYB41 prokMSA_id:093554 AB119598 euryarchaeote clone:ESYB42 prokMSA_id:093205 AB119611 euryarchaeote clone:ESYB55 prokMSA_id:093324 AB119612 euryarchaeote clone:ESYB56 prokMSA_id:094126 AB119614 euryarchaeote clone:ESYB58 prokMSA_id:093634 AB119615 euryarchaeote clone:ESYB59 prokMSA_id:093657 AB119617 euryarchaeote clone:ESYB61 prokMSA_id:094192 AB119618 euryarchaeote clone:ESYB62 prokMSA_id:017133 AF142929 PENDANT-17 prokMSA_id:036239 AF142944 PENDANT-33 prokMSA_id:017749 AF218426 euryarchaeote clone A2M2 prokMSA_id:070805 AF220347 Archaeal str. vp21 prokMSA_id:041430 AF223137 euryarchaeote CA-15_27 prokMSA_id:023001 AF223139 euryarchaeote CA-15_P4 prokMSA_id:027915 AF224864 clone Car65fc prokMSA_id:029681 AF355812 33-FL1A99 prokMSA_id:023715 AF355835 33-P59A99 prokMSA_id:037693 AF355837 33-P127A99 prokMSA_id:031919 AF355838 33-P120A99 prokMSA_id:037523 AF355839 33-P71A98 prokMSA_id:023401 AF355840 33-P23A98 prokMSA_id:048609 AF355896 33-P28A98 prokMSA_id:029959 AF355897 33-P85A98 prokMSA_id:038007 AF355898 33-P102A98 prokMSA_id:043510 AF355907 33-FL96A98 prokMSA_id:018519 AF355908 33-FL3A99 prokMSA_id:048623 AF355909 33-FL19A99 prokMSA_id:051885 AF355911 33-FL130A99 prokMSA_id:047018 AF355912 33-FL43A99 prokMSA_id:049443 AF355914 33-P10A99 prokMSA_id:016471 AF355915 33-P20A99 prokMSA_id:017795 AF355916 33-P62A99 prokMSA_id:040232 AF355921 33-FL15A98 prokMSA_id:029832 AF355924 33-P10A98 prokMSA_id:035198 AF355925 33-P15A98 prokMSA_id:028867 AF355927 33-FL27A98 prokMSA_id:068828 AF473900 euryarchaeote r-5_05C prokMSA_id:026138 AF473901 euryarchaeote t42_18C prokMSA_id:064112 AF477915 clone 4-PML 8% pond prokMSA_id:064111 AF477916 clone 5-PML 8% pond prokMSA_id:064110 AF477918 clone 7-PML 8% pond prokMSA_id:064109 AF477919 clone 8-PML 8% pond prokMSA_id:064106 AF477922 clone 11-PML 8% pond prokMSA_id:063618 AF527003 clone pEPR594 prokMSA_id:063616 AF527004 clone pEPR595 prokMSA_id:059406 AF540864 clone DP11u31 prokMSA_id:059403 AF540870 clone ME25-2 prokMSA_id:036216 AJ239990 euryarchaeote strain DGGE band CIARC-3 prokMSA_id:018628 AJ240004 euryarchaeote strain DGGE band VIARC-1 prokMSA_id:059021 AJ299171 20b-26 clone 20b-26 prokMSA_id:059012 AJ299183 20c-4 clone 20c-4 prokMSA_id:059013 AJ299186 20c-12 clone 20c-12 prokMSA_id:059000 AJ299195 20c-29 clone 20c-29 prokMSA_id:058999 AJ299197 20c-39 clone 20c-39 prokMSA_id:058994 AJ299198 20c-42 clone 20c-42 prokMSA_id:068419 AJ306413 thermoplasmales BANARC-5/6/7 DGGE bands BANARC-5/6/7 prokMSA_id:068418 AJ306416 Uzncultured thermoplasmales VIARC-5 DGGE band VIARC-5 prokMSA_id:084663 AJ495709 euryarchaeote isolate SA-ARCH20 prokMSA_id:089713 AJ566773 euryarchaeon clone DGGE band 04 prokMSA_id:089734 AJ566774 euryarchaeon clone DGGE band 05 prokMSA_id:090676 AJ566779 euryarchaeon clone DGGE band 13 prokMSA_id:088565 AJ566780 euryarchaeon clone DGGE band 14 prokMSA_id:068873 AY063680 clone RS0-25 prokMSA_id:074953 AY164296 clone BLIA-46 prokMSA_id:056254 AY165998 clone FZ2aA40 prokMSA_id:056747 AY166007 clone FZ2bA65 prokMSA_id:056730 AY166026 clone FZ2bA121 prokMSA_id:055229 AY166029 clone FZ2bA207 prokMSA_id:079070 AY182125 clone FZ3aA10 prokMSA_id:088460 AY288401 euryarchaeote 97D-55-02 prokMSA_id:088740 AY288405 euryarchaeote 97D-235-23 prokMSA_id:095378 AY291544 DGGE gel band 10 prokMSA_id:092475 AY341281 ZAR110 prokMSA_id:092614 AY341283 ZAR114 prokMSA_id:092484 AY341285 ZAR116 prokMSA_id:092121 AY341286 ZAR118 prokMSA_id:092982 AY341287 ZAR121 prokMSA_id:053159 D88483 SW1 prokMSA_id:030037 D88484 SC7 prokMSA_id:000025 M59125 Methanococcus igneus str. Kol 5 DSM 5666 . prokMSA_id:000003 M59126 Methanococcus jannaschii str. JAL-1 DSM 2661 . prokMSA_id:000033 NONE Methanococcus "aeolicus" str. A. prokMSA_id:000032 U39016 Methanococcus "aeolicus". prokMSA_id:000024 U63350 clone pSL1. prokMSA_id:000011 U63352 clone pSL55. 1.1.1.2 MC.MARIPALUDIS_GROUP 31 seqs 1.1.1.2.001 OTU 3 seqs prokMSA_id:000043 AF005049 Methanococcus maripaludis str. LL. prokMSA_id:097974 AY196675 Methanococcus vannielii prokMSA_id:000037 M36507 Methanococcus vannielii str. EY33. 1.1.1.2.002 OTU 3 seqs prokMSA_id:059074 AJ294864 19b-32 clone 19b-32 prokMSA_id:059076 AJ294866 19b-35 clone 19b-35 prokMSA_id:059053 AJ294891 19c-33 clone 19c-33 1.1.1.2.003 OTU 1 seq prokMSA_id:036765 AF306670 Methanococcus sp. P2F9701a 1.1.1.2.004 OTU 1 seq prokMSA_id:083800 AB095134 clone:pCIRA-Y 1.1.1.2.005 OTU 1 seq prokMSA_id:092436 AY341282 ZAR111 1.1.1.2.999 poor quality 22 seqs prokMSA_id:069002 AF376794 isolate MUAHR 7 prokMSA_id:069001 AF376795 isolate MUAHR 8 prokMSA_id:034455 AF376796 isolate MUAHR 9 prokMSA_id:069000 AF376798 isolate MUAHR 11 prokMSA_id:059409 AF540865 clone ME10-1 prokMSA_id:058298 AF543691 prokMSA_id:048293 AY032992 ASDS13 prokMSA_id:069004 AY032993 ASDS14 prokMSA_id:083254 AY228686 clone SSA5 prokMSA_id:086889 AY261426 euryarchaeote clone RFLP A1 prokMSA_id:087805 AY261427 euryarchaeote clone RFLP A4 prokMSA_id:092104 AY341280 ZAR109 prokMSA_id:000035 M59290 Methanococcus voltae str. PS ATCC 33273 . prokMSA_id:000044 NONE Methanococcus maripaludis str. JJ ATCC 43000 . prokMSA_id:000042 NONE Methanococcus maripaludis str. D. prokMSA_id:000034 U38461 Methanococcus voltae str. PS DSM 1537 . prokMSA_id:000045 U38484 Methanococcus maripaludis str. JJ DSM 2067 . prokMSA_id:000041 U38485 Methanococcus maripaludis str. delta RC DSM 2771 . prokMSA_id:000038 U38486 Methanococcus maripaludis str. C5 OCM 209. prokMSA_id:000040 U38487 Methanococcus maripaludis str. C6 OCM 363. prokMSA_id:000036 U38488 Methanococcus voltae str. A3 OCM 197. prokMSA_id:000039 U38941 Methanococcus maripaludis str. C7 OCM 364. 1.1.2 METHANOBACTERIALES 819 seqs 1.1.2.1 MT.FERVIDUS_GROUP 92 seqs 1.1.2.1.001 OTU 1 seq prokMSA_id:000054 AB019736 clone pMC2A24. 1.1.2.1.002 OTU 1 seq prokMSA_id:000052 AJ133624 clone KTK 28A. 1.1.2.1.003 OTU 4 seqs prokMSA_id:039923 AF199377 Euryarchaeote J4.75-24 prokMSA_id:000051 AJ133623 clone KTK 18A. prokMSA_id:033564 AJ347789 SA2 group euryarchaeote clone ST-12K22A prokMSA_id:085955 AY226361 SA2 group euryarchaeote clone BBBA-37 1.1.2.1.004 OTU 1 seq prokMSA_id:000050 AJ133622 clone KTK 9A. 1.1.2.1.005 OTU 1 seq prokMSA_id:000049 AF119139 unnamed organism. 1.1.2.1.006 OTU 1 seq prokMSA_id:000048 AF118660 clone pBRKC82. 1.1.2.1.007 OTU 1 seq prokMSA_id:000046 M32222 Methanothermus fervidus. 1.1.2.1.008 OTU 1 seq prokMSA_id:018294 AJ347790 SA2 group euryarchaeote clone ST-12K24A 1.1.2.1.009 OTU 7 seqs prokMSA_id:059082 AJ294856 19b-8 clone 19b-8 prokMSA_id:059073 AJ294867 19b-37 clone 19b-37 prokMSA_id:059069 AJ294871 19b-42 clone 19b-42 prokMSA_id:056185 AJ299153 20a-9 clone 20a-9 prokMSA_id:059011 AJ299179 20b-47 clone 20b-47 prokMSA_id:059006 AJ299188 20c-17 clone 20c-17 prokMSA_id:058996 AJ299199 20c-43 clone 20c-43 1.1.2.1.010 OTU 1 seq prokMSA_id:056758 AY165999 clone FZ2aA51 1.1.2.1.011 OTU 1 seq prokMSA_id:056752 AY166006 clone FZ2aA72 1.1.2.1.012 OTU 1 seq prokMSA_id:056750 AY166008 clone FZ2bA3 1.1.2.1.013 OTU 1 seq prokMSA_id:056745 AY166024 clone FZ2bA112 1.1.2.1.014 OTU 1 seq prokMSA_id:068401 AF355871 33-P43A99 1.1.2.1.015 OTU 3 seqs prokMSA_id:075045 AY164325 candidate division MSBL1 clone ULIA-29 prokMSA_id:083473 AY226379 candidate division MSBL1 clone UBBA-17 prokMSA_id:086486 AY226381 candidate division MSBL1 clone UBBA-54 1.1.2.1.016 OTU 5 seqs prokMSA_id:076278 AY164275 candidate division MSBL1 clone ALIA-100 prokMSA_id:075090 AY164297 candidate division MSBL1 clone BLIA-54 prokMSA_id:076220 AY164316 candidate division MSBL1 clone DLIA-199 prokMSA_id:076403 AY164332 candidate division MSBL1 clone ULIA-89 prokMSA_id:084418 AY226364 candidate division MSBL1 clone BBBA-80 1.1.2.1.017 OTU 2 seqs prokMSA_id:076113 AY164284 clone ALIA-152 prokMSA_id:075109 AY164329 clone ULIA-74 1.1.2.1.018 OTU 7 seqs prokMSA_id:075441 AY164282 clone ALIA-125 prokMSA_id:075338 AY164304 clone DLIA-10 prokMSA_id:075546 AY164307 clone DLIA-14 prokMSA_id:076949 AY164330 clone ULIA-82 prokMSA_id:086425 AY226352 clone ABBA-66 prokMSA_id:085940 AY226358 clone BBBA-111 prokMSA_id:084802 AY226372 clone DBBA-173 1.1.2.1.020 OTU 5 seqs prokMSA_id:075746 AY164283 candidate division MSBL1 clone ALIA-135 prokMSA_id:076484 AY164314 candidate division MSBL1 clone DLIA-170 prokMSA_id:077009 AY164328 candidate division MSBL1 clone ULIA-68 prokMSA_id:085735 AY226355 candidate division MSBL1 clone ABBA-97 prokMSA_id:082568 AY226376 candidate division MSBL1 clone DBBA-37 1.1.2.1.023 OTU 2 seqs prokMSA_id:076938 AY164276 candidate division MSBL1 clone ALIA-103 prokMSA_id:076337 AY164312 candidate division MSBL1 clone DLIA-161 1.1.2.1.024 OTU 2 seqs prokMSA_id:076400 AY164288 candidate division MSBL1 clone ALIA-69 prokMSA_id:076526 AY164313 candidate division MSBL1 clone DLIA-166 1.1.2.1.026 OTU 12 seqs prokMSA_id:076935 AY164280 candidate division MSBL1 clone ALIA-122 prokMSA_id:075606 AY164286 candidate division MSBL1 clone ALIA-161 prokMSA_id:077102 AY164305 candidate division MSBL1 clone DLIA-100 prokMSA_id:076177 AY164308 candidate division MSBL1 clone DLIA-140 prokMSA_id:075766 AY164309 candidate division MSBL1 clone DLIA-141 prokMSA_id:076411 AY164323 candidate division MSBL1 clone ULIA-110 prokMSA_id:076798 AY164333 candidate division MSBL1 clone ULIA-93 prokMSA_id:086245 AY226341 candidate division MSBL1 clone ABBA-110 prokMSA_id:084430 AY226345 candidate division MSBL1 clone ABBA-15 prokMSA_id:086474 AY226359 candidate division MSBL1 clone BBBA-12 prokMSA_id:085937 AY226366 candidate division MSBL1 clone BBBA-8 prokMSA_id:084220 AY226377 candidate division MSBL1 clone UBBA-104 1.1.2.1.027 OTU 1 seq prokMSA_id:083057 AY226360 candidate division MSBL1 clone BBBA-25 1.1.2.1.028 OTU 1 seq prokMSA_id:084192 AY226348 candidate division MSBL1 clone ABBA-49 1.1.2.1.999 poor quality 29 seqs prokMSA_id:078824 AB094525 clone:OHKA1.28 prokMSA_id:000053 AF095273 Methanothermus sociabilis str. Kf1-F1. prokMSA_id:035763 AF355810 33-P120A98 prokMSA_id:068411 AF355858 33-FL8A99 prokMSA_id:068410 AF355859 33-FL21A99 prokMSA_id:068412 AF355860 33-FL29A99 prokMSA_id:068413 AF355861 33-FL64A99 prokMSA_id:068414 AF355862 33-FL113A99 prokMSA_id:068407 AF355863 33-FL116A99 prokMSA_id:068408 AF355864 33-FL1A00 prokMSA_id:068409 AF355865 33-P25A98 prokMSA_id:068405 AF355866 33-P73A99 prokMSA_id:068402 AF355867 33-P74A99 prokMSA_id:068403 AF355868 33-P90A99 prokMSA_id:068406 AF355869 33-P93A99 prokMSA_id:068404 AF355870 33-P98A99 prokMSA_id:068400 AF355872 33-P41A99 prokMSA_id:064119 AF477908 clone 42-UMH 8% pond prokMSA_id:064117 AF477910 clone 52-UMH 8% pond prokMSA_id:064105 AF477923 clone 12-PML 8% pond prokMSA_id:059030 AJ299163 20b-9 clone 20b-9 prokMSA_id:059010 AJ299185 20c-10 clone 20c-10 prokMSA_id:059009 AJ299187 20c-16 clone 20c-16 prokMSA_id:076530 AY164279 candidate division MSBL1 clone ALIA-12 prokMSA_id:075664 AY164289 candidate division MSBL1 clone ALIA-8 prokMSA_id:095682 AY211709 crenarchaeote clone GoM GC234 621R prokMSA_id:082789 AY226375 candidate division MSBL1 clone DBBA-216 prokMSA_id:000055 M59145 Methanothermus fervidus str. V 24 S DSM 2088 . prokMSA_id:000047 U63354 clone pSL79. 1.1.2.2 METHANOBACTERIUM_GROUP 727 seqs 1.1.2.2.1 MB.FORMICICUM_SUBGROUP 549 seqs 1.1.2.2.1.004 OTU 1 seq prokMSA_id:000200 AJ131265 clone VAL68. 1.1.2.2.1.005 OTU 6 seqs prokMSA_id:062886 AB077223 euryarchaeote clone:KuA13 prokMSA_id:000201 AF050614 clone WCHA1-57. prokMSA_id:032110 AF424763 69-1 prokMSA_id:051118 AF424764 46-1 prokMSA_id:052425 AF424765 44A-1 prokMSA_id:027098 AF424769 39-2 1.1.2.2.1.010 OTU 1 seq prokMSA_id:000075 Z29436 Methanobacterium formicicum DSM 3636. 1.1.2.2.1.015 OTU 16 seqs prokMSA_id:000062 AB022186 Methanosphaera R6. prokMSA_id:000074 AB026172 clone MEm3. prokMSA_id:000063 AF029195 Methanosphaera methanogen ARC21. prokMSA_id:000064 AF029196 Methanosphaera methanogen ARC29. prokMSA_id:000065 AF029197 Methanosphaera methanogen ARC8. prokMSA_id:000066 AF029198 Methanosphaera methanogen ARC14. prokMSA_id:000067 AF029199 Methanosphaera methanogen ARC30. prokMSA_id:000068 AF029200 Methanosphaera methanogen ARC39. prokMSA_id:000069 AF029201 Methanosphaera methanogen ARC43. prokMSA_id:000070 AF029202 Methanosphaera methanogen ARC17. prokMSA_id:000071 AF029203 Methanosphaera methanogen ARC18. prokMSA_id:000072 AF029204 Methanosphaera methanogen ARC49. prokMSA_id:000073 AF029205 Methanosphaera methanogen ARC62. prokMSA_id:097063 AY196684 Methanosphaera stadtmanae prokMSA_id:083607 AY256647 clone A2-115 prokMSA_id:000057 M59139 Methanosphaera stadtmanae str. MCB-3 DSM 3091 . 1.1.2.2.1.016 OTU 1 seq prokMSA_id:000059 AF004346 clone BBA9. 1.1.2.2.1.018 OTU 1 seq prokMSA_id:016893 AB050214 SAGMA-J 1.1.2.2.1.019 OTU 4 seqs prokMSA_id:024075 AJ347779 SA1 group euryarchaeote clone ST-3K26A prokMSA_id:052466 AJ347780 SA1 group euryarchaeote clone ST-3K1A prokMSA_id:017811 AJ347782 SA1 group euryarchaeote clone ST-12K11A prokMSA_id:032440 AJ347783 SA1 group euryarchaeote clone ST-12K28A 1.1.2.2.1.020 OTU 1 seq prokMSA_id:019871 AF290522 marine AEGEAN_62 1.1.2.2.1.021 OTU 1 seq prokMSA_id:021835 AF199379 Euryarchaeote J4.75-15 1.1.2.2.1.022 OTU 1 seq prokMSA_id:027550 AF225625 clone AS01-23 1.1.2.2.1.023 OTU 2 seqs prokMSA_id:052505 AJ296315 SM1 prokMSA_id:029032 AJ297912 SM1K20 1.1.2.2.1.024 OTU 1 seq prokMSA_id:030147 AJ308942 euryarchaeote clone ARS3-c46 1.1.2.2.1.025 OTU 2 seqs prokMSA_id:033106 AJ347784 SA1 group euryarchaeote clone ST-12K10A prokMSA_id:041854 AJ347785 SA1 group euryarchaeote clone ST-3K54A 1.1.2.2.1.028 OTU 1 seq prokMSA_id:058251 AF357891 MN16BT2-68 1.1.2.2.1.029 OTU 1 seq prokMSA_id:058242 AF357898 MN16BT2-83 1.1.2.2.1.030 OTU 1 seq prokMSA_id:058241 AF357897 MN16BT2-76 1.1.2.2.1.031 OTU 1 seq prokMSA_id:058240 AF357896 MN16BT2-75 1.1.2.2.1.032 OTU 1 seq prokMSA_id:043427 AB050222 SAGMA-Q 1.1.2.2.1.033 OTU 1 seq prokMSA_id:044789 AF199378 Euryarchaeote J4.75-12 1.1.2.2.1.034 OTU 2 seqs prokMSA_id:045914 AF293557 euryarchaeote clone P3-Ar-10 prokMSA_id:051931 AF293568 euryarchaeote clone P3-Ar-23 1.1.2.2.1.035 OTU 1 seq prokMSA_id:048957 AB050216 SAGMA-K 1.1.2.2.1.036 OTU 1 seq prokMSA_id:061907 AJ310860 clone LKS11 1.1.2.2.1.037 OTU 1 seq prokMSA_id:061913 AJ310856 clone LKS7 1.1.2.2.1.038 OTU 1 seq prokMSA_id:063712 AJ412786 clone DERS8 1.1.2.2.1.039 OTU 1 seq prokMSA_id:064118 AF477909 clone 50-UMH 8% pond 1.1.2.2.1.042 OTU 1 seq prokMSA_id:079002 AB094543 clone:OHKA4.90 1.1.2.2.1.044 OTU 22 seqs prokMSA_id:078911 AB094515 clone:OHKA1.3 prokMSA_id:079054 AB094549 clone:OHKA5.37 prokMSA_id:096339 AB107843 clone:SJ-10 prokMSA_id:069892 AF134388 TA1c9 prokMSA_id:000058 AF134390 clone TA1f2. prokMSA_id:037573 AF142981 BURTON2_A prokMSA_id:045897 AF142982 BURTON20_A prokMSA_id:058253 AF357889 MN16BT2-65 prokMSA_id:059086 AJ294852 19b-1 clone 19b-1 prokMSA_id:059085 AJ294853 19b-2 clone 19b-2 prokMSA_id:058991 AJ294857 19b-9 clone 19b-9 prokMSA_id:059071 AJ294870 19b-41 clone 19b-41 prokMSA_id:059057 AJ294885 19c-10 clone 19c-10 prokMSA_id:059052 AJ294888 19c-18 clone 19c-18 prokMSA_id:059050 AJ294895 19c-50 clone 19c-50 prokMSA_id:098779 AY211696 Methanomicrobiales clone GoM GC234 024R prokMSA_id:095445 AY211715 Thermoplasmatales clone GoM GC185 601A prokMSA_id:098013 AY211722 Thermoplasmatales clone GoM GC234 011A prokMSA_id:096514 AY211725 Thermoplasmatales clone GoM GC234 045A prokMSA_id:093200 AY323215 Thermoplasmatales clone AMOS4A_452_D03 prokMSA_id:094265 AY323217 Thermoplasmatales clone AMOS1B_4113_A05 prokMSA_id:093643 AY323220 Thermoplasmatales clone AMOS1A_4113_D05 1.1.2.2.1.046 OTU 250 seqs prokMSA_id:000140 AB008900 Methanobrevibacter termite gut Cd30. prokMSA_id:000148 AB009821 Methanobrevibacter sp. prokMSA_id:000129 AB009827 Methanobrevibacter sp. prokMSA_id:000115 AB017514 Methanobrevibacter sp. str. MB-9. prokMSA_id:000161 AB022181 Methanobrevibacter R1. prokMSA_id:000162 AB022182 Methanobrevibacter R2. prokMSA_id:000163 AB022183 Methanobrevibacter R3. prokMSA_id:000164 AB022184 Methanobrevibacter R4. prokMSA_id:000165 AB022185 Methanobrevibacter R5. prokMSA_id:000112 AB026168 clone MIp1. prokMSA_id:000171 AB026169 clone MIp2. prokMSA_id:000113 AB026170 clone MEm1. prokMSA_id:000172 AB026171 clone MEm2. prokMSA_id:000173 AB026173 clone MPm1. prokMSA_id:000174 AB026174 clone MPm2. prokMSA_id:000212 AB026175 clone MPm3. prokMSA_id:000151 AB026912 Methanobrevibacter LRsD2. prokMSA_id:000131 AB026913 Methanobrevibacter LRsD3. prokMSA_id:000119 AB026914 Methanobrevibacter LRsM1. prokMSA_id:000152 AB026915 Methanobrevibacter RsW2. prokMSA_id:000120 AB026916 Methanobrevibacter RsW10. prokMSA_id:000121 AB026917 Methanobrevibacter RsI4. prokMSA_id:000175 AB026918 Methanobrevibacter RsI12. prokMSA_id:000153 AB026919 Methanobrevibacter RsI17. prokMSA_id:000154 AB026920 Methanobrevibacter LHD2. prokMSA_id:000155 AB026921 Methanobrevibacter LHD12. prokMSA_id:000156 AB026922 Methanobrevibacter LHM8. prokMSA_id:000157 AB026923 Methanobrevibacter HW1. prokMSA_id:000158 AB026924 Methanobrevibacter HW2. prokMSA_id:000141 AB026925 Methanobrevibacter HW3. prokMSA_id:000159 AB026926 Methanobrevibacter HI1. prokMSA_id:000176 AB026927 Methanobrevibacter HI26. prokMSA_id:000160 AB026928 Methanobrevibacter HI28. prokMSA_id:039741 AB033290 Methanobrevibacter sp. LRsD4 prokMSA_id:043504 AB033291 Methanobrevibacter sp. RsW3 prokMSA_id:026500 AB033292 Methanobrevibacter sp. RsI3 prokMSA_id:039249 AB033293 Methanobrevibacter sp. HW23 prokMSA_id:038084 AB034183 rumen methanogen 956 prokMSA_id:029783 AB034185 rumen methanogen M6 prokMSA_id:021086 AB034188 rumen methanogen 15 prokMSA_id:024414 AB065294 Methanobrevibacter arboriphilus prokMSA_id:097101 AB108496 Methanobacterium sp. TM-8 prokMSA_id:094242 AB118591 Endosymbiont 'TS1' of Trimyema compressum prokMSA_id:000079 AF028688 Methanobacterium bryantii str. RiH2. prokMSA_id:000134 AF028689 Methanobacterium formicicum str. FCam. prokMSA_id:040123 AF028690 Methanobacterium sp. DSM 11106 complete prokMSA_id:000087 AF029171 Methanobrevibacter methanogen ARC1. prokMSA_id:000088 AF029172 Methanobrevibacter methanogen ARC12. prokMSA_id:000089 AF029173 Methanobrevibacter methanogen ARC15. prokMSA_id:000090 AF029174 Methanobrevibacter methanogen ARC20. prokMSA_id:000091 AF029175 Methanobrevibacter methanogen ARC23. prokMSA_id:000092 AF029176 Methanobrevibacter methanogen ARC24. prokMSA_id:000093 AF029177 Methanobrevibacter methanogen ARC28. prokMSA_id:000094 AF029178 Methanobrevibacter methanogen ARC32. prokMSA_id:000095 AF029179 Methanobrevibacter methanogen ARC40. prokMSA_id:000096 AF029180 Methanobrevibacter methanogen ARC44. prokMSA_id:000097 AF029181 Methanobrevibacter methanogen ARC51. prokMSA_id:000098 AF029182 Methanobrevibacter methanogen ARC52. prokMSA_id:000099 AF029183 Methanobrevibacter methanogen ARC53. prokMSA_id:000100 AF029184 Methanobrevibacter methanogen ARC61. prokMSA_id:000101 AF029185 Methanobrevibacter methanogen ARC65. prokMSA_id:000102 AF029186 Methanobrevibacter methanogen ARC13. prokMSA_id:000103 AF029187 Methanobrevibacter methanogen ARC19. prokMSA_id:000104 AF029188 Methanobrevibacter methanogen ARC25. prokMSA_id:000105 AF029189 Methanobrevibacter methanogen ARC26. prokMSA_id:000106 AF029190 Methanobrevibacter methanogen ARC27. prokMSA_id:000107 AF029191 Methanobrevibacter methanogen ARC33. prokMSA_id:000108 AF029192 Methanobrevibacter methanogen ARC41. prokMSA_id:000109 AF029193 Methanobrevibacter methanogen ARC50. prokMSA_id:000110 AF029194 Methanobrevibacter methanogen ARC66. prokMSA_id:000111 AF157524 Methanobrevibacter Ar40. prokMSA_id:047354 AF225602 clone AS00-34 prokMSA_id:036339 AF225604 clone AS01-01 prokMSA_id:069941 AF225615 clone AS01-13 prokMSA_id:042605 AF225618 clone AS01-16 prokMSA_id:031450 AF225620 clone AS01-18 prokMSA_id:024114 AF225673 clone AS17-11 prokMSA_id:054274 AF225681 clone AS17-21 prokMSA_id:044183 AF233586 Methanobacterium congolense prokMSA_id:022694 AF242652 Methanobrevibacter sp. ATM prokMSA_id:018599 AF276958 Methanobacterium curvum prokMSA_id:023319 AF293481 euryarchaeote clone P4b-Ar-1 prokMSA_id:043519 AF293483 euryarchaeote clone P4b-Ar-11 prokMSA_id:037767 AF293486 euryarchaeote clone P4b-Ar-14 prokMSA_id:040431 AF293487 euryarchaeote clone P4b-Ar-15 prokMSA_id:029882 AF293489 euryarchaeote clone P4b-Ar-17 prokMSA_id:047630 AF293492 euryarchaeote clone P4b-Ar-20 prokMSA_id:047647 AF293493 euryarchaeote clone P4b-Ar-23 prokMSA_id:019826 AF293496 euryarchaeote clone P4b-Ar-27 prokMSA_id:049339 AF293497 euryarchaeote clone P4b-Ar-28 prokMSA_id:046530 AF293499 euryarchaeote clone P4b-Ar-3 prokMSA_id:052146 AF293500 euryarchaeote clone P4b-Ar-30 prokMSA_id:045843 AF293502 euryarchaeote clone P4b-Ar-5 prokMSA_id:073262 AF293503 euryarchaeote clone P4b-Ar-6 prokMSA_id:020956 AF293505 euryarchaeote clone P4b-Ar-8 prokMSA_id:030931 AF293542 euryarchaeote clone P5-Ar2-25 prokMSA_id:074533 AF293543 euryarchaeote clone P5-Ar2-27 prokMSA_id:029238 AF293550 euryarchaeote clone P5-Ar-14 prokMSA_id:052506 AF293552 euryarchaeote clone P5-Ar-5 prokMSA_id:042915 AF293553 euryarchaeote clone P5-Ar-6 prokMSA_id:045370 AF293554 euryarchaeote clone P5-Ar-7 prokMSA_id:049936 AF293555 euryarchaeote clone P5-Ar-9 prokMSA_id:023055 AF293556 euryarchaeote clone P3-Ar-1 prokMSA_id:017042 AF293558 euryarchaeote clone P3-Ar-11 prokMSA_id:017597 AF293559 euryarchaeote clone P3-Ar-12 prokMSA_id:052135 AF293560 euryarchaeote clone P3-Ar-13 prokMSA_id:041676 AF293561 euryarchaeote clone P3-Ar-14 prokMSA_id:040420 AF293562 euryarchaeote clone P3-Ar-16 prokMSA_id:021844 AF293566 euryarchaeote clone P3-Ar-21 prokMSA_id:047086 AF293567 euryarchaeote clone P3-Ar-22 prokMSA_id:026591 AF293571 euryarchaeote clone P3-Ar-26 prokMSA_id:045768 AF293572 euryarchaeote clone P3-Ar-27 prokMSA_id:031914 AF293573 euryarchaeote clone P3-Ar-28 prokMSA_id:028673 AF293575 euryarchaeote clone P3-Ar-4 prokMSA_id:074676 AF293579 euryarchaeote clone P3-Ar-6 prokMSA_id:019864 AF293580 euryarchaeote clone P5-Ar-15 prokMSA_id:070365 AF293581 euryarchaeote clone P5-Ar2-1 prokMSA_id:021576 AF293582 euryarchaeote clone P5-Ar2-15 prokMSA_id:052883 AF293583 euryarchaeote clone P5-Ar2-16 prokMSA_id:046993 AF293584 euryarchaeote clone P5-Ar2-21 prokMSA_id:032604 AF293585 euryarchaeote clone P5-Ar2-26 prokMSA_id:051453 AF293586 euryarchaeote clone P5-Ar2-30 prokMSA_id:027780 AF293588 euryarchaeote clone P3-Ar-29 prokMSA_id:045561 AF395425 Arc No. 20 prokMSA_id:073186 AF455071 clone A6 prokMSA_id:071166 AF455072 clone A7 prokMSA_id:073107 AF481340 clone Fuku05 prokMSA_id:077486 AF524847 26-4a1 prokMSA_id:077526 AF524848 26-4a6 prokMSA_id:077331 AF524849 26-5a1 prokMSA_id:077464 AF524850 26-a101 prokMSA_id:077567 AF524851 26-a134 prokMSA_id:000130 AJ009958 Methanobrevibacter sp. str. SM9. prokMSA_id:000114 AJ009959 Methanobrevibacter sp. str. NT7. prokMSA_id:024205 AJ132639 methanogenic endosymbiont of Nyctotherus ovalis prokMSA_id:019108 AJ132640 methanogenic endosymbiont of Nyctotherus ovalis prokMSA_id:037652 AJ132641 methanogenic endosymbiont of Nyctotherus ovalis prokMSA_id:044812 AJ132642 methanogenic endosymbiont of Nyctotherus ovalis prokMSA_id:074782 AJ132643 methanogenic endosymbiont of Nyctotherus ovalis prokMSA_id:041745 AJ132644 methanogenic endosymbiont of Nyctotherus ovalis prokMSA_id:030104 AJ132645 methanogenic endosymbiont of Nyctotherus ovalis prokMSA_id:027589 AJ132646 methanogenic endosymbiont of Nyctotherus cordiformis prokMSA_id:000189 AJ227934 clone ARR21. prokMSA_id:000190 AJ227938 clone ARR25. prokMSA_id:000191 AJ227939 clone ARR26. prokMSA_id:000192 AJ227947 clone ARR36. prokMSA_id:000193 AJ227949 clone ARR39. prokMSA_id:000180 AJ236495 clone S15-14. prokMSA_id:048470 AJ244298 anaerobic methanogenic E30-2 prokMSA_id:035393 AJ288311 clone AC4 prokMSA_id:027169 AJ288320 clone AC103 prokMSA_id:041437 AJ290561 Cas18#2 prokMSA_id:050500 AJ290562 Cas18#3 prokMSA_id:048678 AJ308904 euryarchaeote clone ARS1-c1 prokMSA_id:072126 AJ308905 euryarchaeote clone ARS1-c5 prokMSA_id:071941 AJ308906 euryarchaeote clone ARS1-c7 prokMSA_id:046279 AJ308915 euryarchaeote clone ARS1-c62 prokMSA_id:069883 AJ308923 euryarchaeote clone ARS2-c27 prokMSA_id:048101 AJ308924 euryarchaeote clone ARS2-c34 prokMSA_id:047363 AJ308925 euryarchaeote clone ARS2-c40 prokMSA_id:035509 AJ308926 euryarchaeote clone ARS2-c41 prokMSA_id:070112 AJ308927 euryarchaeote clone ARS2-c46 prokMSA_id:029514 AJ308928 euryarchaeote clone ARS2-c51 prokMSA_id:019596 AJ308929 euryarchaeote clone ARS2-c52 prokMSA_id:050569 AJ308930 euryarchaeote clone ARS2-c56 prokMSA_id:052636 AJ308931 euryarchaeote clone ARS2-c62 prokMSA_id:043847 AJ308932 euryarchaeote clone ARS2-c69 prokMSA_id:071440 AJ308934 euryarchaeote clone ARS2-c84 prokMSA_id:047595 AJ308935 euryarchaeote clone ARS2-c97 prokMSA_id:017798 AJ308936 euryarchaeote clone ARS2-c99 prokMSA_id:070893 AJ308937 euryarchaeote clone ARS3-c6 prokMSA_id:034246 AJ308941 euryarchaeote clone ARS3-c40 prokMSA_id:024562 AJ308944 euryarchaeote clone ARS3-c51 prokMSA_id:043256 AJ308945 euryarchaeote clone ARS3-c52 prokMSA_id:033437 AJ308946 euryarchaeote clone ARS3-c53 prokMSA_id:049030 AJ308947 euryarchaeote clone ARS3-c56 prokMSA_id:052255 AJ308948 euryarchaeote clone ARS3-c62 prokMSA_id:040197 AJ308949 euryarchaeote clone ARS3-c69 prokMSA_id:042539 AJ308950 euryarchaeote clone ARS3-c72 prokMSA_id:044714 AJ308951 euryarchaeote clone ARS3-c84 prokMSA_id:039377 AJ308952 euryarchaeote clone ARS3-c91 prokMSA_id:045275 AJ308953 euryarchaeote clone ARS3-c98 prokMSA_id:039720 AJ308954 euryarchaeote clone ARS7-c1 prokMSA_id:030148 AJ308957 euryarchaeote clone ARS7-c5 prokMSA_id:032597 AJ308958 euryarchaeote clone ARS7-c7 prokMSA_id:072495 AJ308959 euryarchaeote clone ARS7-c9 prokMSA_id:023552 AJ308960 euryarchaeote clone ARS7-c11 prokMSA_id:052284 AJ308961 euryarchaeote clone ARS7-c13 prokMSA_id:037872 AJ308963 euryarchaeote clone ARS7-c18 prokMSA_id:061899 AJ310872 clone LKS23 prokMSA_id:063720 AJ412779 clone DERS1 prokMSA_id:063719 AJ412780 clone DERS2 prokMSA_id:063721 AJ412781 clone DERS3 prokMSA_id:063718 AJ412788 clone DERS10 prokMSA_id:063716 AJ412790 clone DERS12 prokMSA_id:063717 AJ412791 clone DERS13 prokMSA_id:063711 AJ412793 clone DERS15 prokMSA_id:078121 AJ459876 Methanobacteriaceae clone AMC 3 M14 prokMSA_id:078051 AJ459881 Methanobacteriaceae clone AMC 6 MB11 prokMSA_id:077878 AJ459882 Methanobacteriaceae clone AEC 3 M71 prokMSA_id:077966 AJ459884 Methanobacteriaceae clone AEC 2 M46 prokMSA_id:077949 AJ459885 Methanobacteriaceae clone AMC 7 MB31 prokMSA_id:078744 AY175399 clone MB-11 prokMSA_id:097471 AY196657 Methanobacterium bryantii strain MOH prokMSA_id:096099 AY196658 Methanobacterium bryantii strain MOHG prokMSA_id:097554 AY196659 Methanobacterium formicicum prokMSA_id:098500 AY196662 Methanobrevibacter arboriphilus strain A2 prokMSA_id:097004 AY196663 Methanobrevibacter arboriphilus strain AZ prokMSA_id:095714 AY196664 Methanobrevibacter arboriphilus strain DC prokMSA_id:095453 AY196665 Methanobrevibacter arboriphilus strain DH-1 prokMSA_id:095916 AY196666 Methanobrevibacter ruminantium prokMSA_id:096148 AY196667 Methanobrevibacter smithii strain ALI-A prokMSA_id:098608 AY196668 Methanobrevibacter smithii strain B181 prokMSA_id:098872 AY196669 Methanobrevibacter smithii strain PS prokMSA_id:095540 AY196670 Methanobrevibacter sp. Z4 prokMSA_id:096058 AY196671 Methanobrevibacter sp. Z6 prokMSA_id:096980 AY196672 Methanobrevibacter sp. Z8 prokMSA_id:095844 AY196673 Methanobrevibacter sp. ZA-10 prokMSA_id:086651 AY256629 clone S2L-125 prokMSA_id:086685 AY256645 clone S2L-111 prokMSA_id:086375 AY280653 clone G3-20 prokMSA_id:084431 AY280655 clone G4-13 prokMSA_id:090647 AY311668 clone YRCC47 prokMSA_id:090047 AY311676 clone YRCC57 prokMSA_id:089335 AY311680 clone YRCD06 prokMSA_id:089351 AY311735 clone YRCE29 prokMSA_id:092357 AY350742 Methanobacterium sp. 8-2 prokMSA_id:093778 AY368460 clone CM17 prokMSA_id:000198 M36508 Methanobacterium formicicum DSM 1312. prokMSA_id:000177 M59124 Methanobacterium bryantii str. M.o.H. DSM 863 . prokMSA_id:000138 U41095 Methanobrevibacter cuticularis str. RFM-1 DSM 11139 . prokMSA_id:000077 U55233 Methanobrevibacter smithii str. PS DSM 861 . prokMSA_id:000122 U55234 Methanobrevibacter smithii str. ALI. prokMSA_id:000123 U55235 Methanobrevibacter smithii str. B181 DSM 11975. prokMSA_id:000086 U55237 Methanobrevibacter sp. str. GS DSM 11979. prokMSA_id:000125 U55238 Methanobrevibacter sp. str. HO DSM 11977. prokMSA_id:000126 U55239 Methanobrevibacter sp. str. PG DSM 11978. prokMSA_id:000128 U55241 Methanobrevibacter sp. str. RT. prokMSA_id:000150 U62533 Methanobrevibacter curvatus str. RFM-2 DSM 11111 . prokMSA_id:000203 U81775 clone vadinDC06. prokMSA_id:000139 U82322 Methanobrevibacter filiformis str. RFM-3 DSM 11501 . prokMSA_id:000133 X99044 Methanobacterium subterraneum str. A8p DSM 11074 . prokMSA_id:000136 X99045 Methanobacterium subterraneum str. C2BIS DSM 11075. prokMSA_id:000214 X99137 Methanobacterium sp. str. BRM12. prokMSA_id:000185 Y15385 clone ABS1. prokMSA_id:000186 Y15388 clone ABS7. prokMSA_id:000187 Y15390 clone ABS10. prokMSA_id:000188 Y15399 clone A5.1-B. prokMSA_id:000184 Y15401 Methanobacterium sp. str. VeH52. prokMSA_id:000179 Y18073 Methanobacterium sp. str. Bab-1. 1.1.2.2.1.047 OTU 1 seq prokMSA_id:092108 AY341267 ZAR98 1.1.2.2.1.048 OTU 1 seq prokMSA_id:092843 AY341269 ZAR100 1.1.2.2.1.049 OTU 1 seq prokMSA_id:093021 AY341268 ZAR99 1.1.2.2.1.050 OTU 1 seq prokMSA_id:093604 AY323214 Thermoplasmatales clone AMOS4B_452_C01 1.1.2.2.1.051 OTU 1 seq prokMSA_id:095609 AY211714 Thermoplasmatales clone GoM GC234 643R 1.1.2.2.1.999 poor quality 220 seqs prokMSA_id:022628 AB011295 euryarchaeote clone MUG3 prokMSA_id:000145 AB024039 Methanobrevibacter methanogenic symbiont RS208. prokMSA_id:000146 AB024040 Methanobrevibacter methanogenic symbiont RS104. prokMSA_id:000166 AB024041 Methanobrevibacter methanogenic symbiont RS404. prokMSA_id:000147 AB024042 Methanobrevibacter methanogenic symbiont RS301. prokMSA_id:017816 AB035623 sheep rumen methanogen clone 12 prokMSA_id:016947 AB035625 sheep rumen methanogen clone 20 prokMSA_id:049752 AB035626 sheep rumen methanogen clone 22 prokMSA_id:023553 AB035627 sheep rumen methanogen clone 31 prokMSA_id:020688 AB035629 sheep rumen methanogen clone 36 prokMSA_id:043842 AB035630 sheep rumen methanogen clone 38 prokMSA_id:026450 AB035631 sheep rumen methanogen clone 41 prokMSA_id:046110 AB035633 sheep rumen methanogen clone 47 prokMSA_id:027941 AB035635 sheep rumen methanogen clone 49 prokMSA_id:030804 AB035637 sheep rumen methanogen clone 55 prokMSA_id:025360 AB035638 sheep rumen methanogen clone 57 prokMSA_id:036528 AB035639 sheep rumen methanogen clone 58 prokMSA_id:032364 AB035640 sheep rumen methanogen clone 60 prokMSA_id:050824 AB035641 sheep rumen methanogen clone 9 prokMSA_id:050622 AB036318 Methanobrevibacter sp. MD101 prokMSA_id:017436 AB036319 Methanobrevibacter sp. MD102 prokMSA_id:026355 AB036320 Methanobrevibacter sp. MD103 prokMSA_id:026938 AB036321 Methanobrevibacter sp. MD104 prokMSA_id:044446 AB036322 Methanobrevibacter sp. MD105 prokMSA_id:051624 AB036327 Methanobrevibacter sp. XT106 prokMSA_id:043938 AB036328 Methanobrevibacter sp. XT108 prokMSA_id:022212 AB036329 Methanobrevibacter sp. XT109 prokMSA_id:043792 AB046183 GA54 prokMSA_id:050975 AB046192 HA08 prokMSA_id:020419 AB055991 WSB-9 prokMSA_id:075076 AB062299 methanogenic symbiont ST155 prokMSA_id:062879 AB077224 euryarchaeote clone:KuA14 prokMSA_id:000060 AF004347 clone BBA10. prokMSA_id:000061 AF004348 clone BBA12. prokMSA_id:000118 AF054208 Methanobrevibacter smithii. prokMSA_id:000204 AF093061 Methanobacterium palustre str. F DSM 3108 . prokMSA_id:000056 AF095260 Methanobacterium espanolae str. GP9 NRC 5912 . prokMSA_id:000078 AF095261 Methanobacterium ivanovii str. Ivanov OCM 140. prokMSA_id:000149 AF095263 Methanobacterium palustre str. F DSM 3108 . prokMSA_id:000083 AF095265 Methanobacterium uliginosum str. Kf1-F1. prokMSA_id:000199 AF134389 clone TA1e6. prokMSA_id:000213 AF149890 str. A2.95.53. prokMSA_id:000081 AF149892 str. A8.96.15. prokMSA_id:000082 AF149893 str. A9.96.64. prokMSA_id:051356 AF293522 euryarchaeote clone P5-Ar2-22 prokMSA_id:032838 AF293538 euryarchaeote clone P5-Ar2-11 prokMSA_id:050821 AF293540 euryarchaeote clone P5-Ar2-17 prokMSA_id:025168 AF293541 euryarchaeote clone P5-Ar2-19 prokMSA_id:028614 AF293545 euryarchaeote clone P5-Ar2-8 prokMSA_id:070028 AF314241 clone ANME 19 prokMSA_id:041187 AF339850 clone AC prokMSA_id:018544 AF339851 clone AD prokMSA_id:051198 AF355901 33-P27A98 prokMSA_id:058244 AF357895 MN16BT2-74 prokMSA_id:068287 AF361681 clone MN16BT2-66 prokMSA_id:068280 AF361690 clone MN16BT2-84 prokMSA_id:072084 AF455066 clone A1 prokMSA_id:071378 AF455068 clone A3 prokMSA_id:050254 AF473902 euryarchaeote r42K_26C prokMSA_id:064116 AF477913 clone 2-PML 8% pond prokMSA_id:068611 AF486654 clone W6-38-SC1-037 prokMSA_id:056302 AF486655 clone W6-38-SC1-038 prokMSA_id:068609 AF486657 clone W6-38-SC1-040 prokMSA_id:068610 AF486658 clone W6-38-SC1-041 prokMSA_id:068607 AF486659 clone W6-38-SC1-042 prokMSA_id:068608 AF486660 clone W6-38-SC1-043 prokMSA_id:068606 AF486662 clone W6-38-SC1-045 prokMSA_id:068605 AF486663 clone W6-38-SC1-046 prokMSA_id:068604 AF486664 clone W6-38-SC1-047 prokMSA_id:068603 AF486665 clone W6-38-SC1-048 prokMSA_id:068602 AF486666 clone W6-38-SC1-049 prokMSA_id:068600 AF486667 clone W6-38-SC1-050 prokMSA_id:068601 AF486668 clone W6-38-SC1-051 prokMSA_id:068599 AF486669 clone W6-38-SC1-052 prokMSA_id:068598 AF486670 clone W6-38-SC1-053 prokMSA_id:068597 AF486671 clone W6-38-SC1-054 prokMSA_id:068596 AF486672 clone W6-38-SC1-055 prokMSA_id:068595 AF486673 clone W6-38-SC1-056 prokMSA_id:068594 AF486674 clone W6-38-SC1-057 prokMSA_id:068588 AF486675 clone W6-38-SC1-059 prokMSA_id:066216 AF509455 Methanobacterium uliginosum clone 4a prokMSA_id:059412 AF540863 clone DP11u2 prokMSA_id:000167 AJ001709 Methanobrevibacter oralis DSM 7256. prokMSA_id:000168 AJ001710 Methanobrevibacter smithii DSM 2375. prokMSA_id:000169 AJ001711 Methanobrevibacter sp. prokMSA_id:000170 AJ132468 Methanobrevibacter sp. prokMSA_id:048503 AJ132647 methanogenic endosymbiont of Nyctotherus velox prokMSA_id:044926 AJ238131 Methanogenic endosymbiont of Nyctotherus cordiformis prokMSA_id:000205 AJ243838 Methanobrevibacter FMB1. prokMSA_id:000206 AJ243839 Methanobrevibacter FMB2. prokMSA_id:000207 AJ243840 Methanobrevibacter FMB3. prokMSA_id:000181 AJ243841 Methanobrevibacter FMBK1. prokMSA_id:000182 AJ243842 Methanobrevibacter FMBK2. prokMSA_id:000208 AJ243843 Methanobrevibacter FMBK3. prokMSA_id:000209 AJ243844 Methanobrevibacter FMBK4. prokMSA_id:000210 AJ243845 Methanobrevibacter FMBK5. prokMSA_id:000211 AJ243846 Methanobrevibacter FMBK6. prokMSA_id:000183 AJ243847 Methanobrevibacter FMBK7. prokMSA_id:025808 AJ290563 Cas18#4 prokMSA_id:020477 AJ305071 63-A10 clone 63-A10 prokMSA_id:021036 AJ305076 63-A16 clone 63-A16 prokMSA_id:042119 AJ305077 63-A17 clone 63-A17 prokMSA_id:028934 AJ305079 63-A19 clone 63-A19 prokMSA_id:048547 AJ308939 euryarchaeote clone ARS3-c18 prokMSA_id:071457 AJ308962 euryarchaeote clone ARS7-c17 prokMSA_id:077893 AJ459877 Methanobacteriaceae clone AEC 11 M612 prokMSA_id:077634 AJ459878 Methanobacteriaceae clone AEC 10 M67 prokMSA_id:077705 AJ459879 Methanobacteriaceae clone AEC 9 MB61 prokMSA_id:077936 AJ459880 Methanobacteriaceae clone AEC 8 M610 prokMSA_id:078164 AJ459883 Methanobacteriaceae clone AEC 6 MB64 prokMSA_id:078404 AJ459886 Methanobacteriaceae clone AEC 4 M417 prokMSA_id:078139 AJ459887 Methanobacteriaceae clone AMC 4 M19 prokMSA_id:077891 AJ459888 Methanobacteriaceae clone AMC 5 M12 prokMSA_id:078129 AJ459889 Methanobacteriaceae clone AEC 5 MB53 prokMSA_id:077753 AJ459890 Methanobacteriaceae clone AED 4 DGGE 6 prokMSA_id:077597 AJ459891 Methanobacteriaceae clone AED 9 DGGE 1 prokMSA_id:077807 AJ459892 Methanobacteriaceae clone AED 2 DGGE 4 prokMSA_id:078311 AJ459893 Methanobacteriaceae clone AED 8 DGGE 2 prokMSA_id:078266 AJ459894 Methanobacteriaceae clone AED 5 DGGE MSMX 29 prokMSA_id:084114 AJ495697 euryarchaeote isolate SA-ARCH4 prokMSA_id:085383 AJ495711 euryarchaeote isolate SA-ARCH22 prokMSA_id:052444 AY032984 ASDS3 prokMSA_id:020914 AY032989 ASDS9 prokMSA_id:037932 AY032990 ASDS10 prokMSA_id:046228 AY032991 ASDS11 prokMSA_id:047549 AY032994 ASDS16 prokMSA_id:071862 AY055769 clone Alth12 prokMSA_id:082883 AY092100 clone AM27 prokMSA_id:083540 AY092101 clone AM38 prokMSA_id:082524 AY092102 clone AM16 prokMSA_id:086026 AY092103 clone AM21 prokMSA_id:086192 AY092104 clone AM7 prokMSA_id:084419 AY092105 clone AM10 prokMSA_id:083382 AY092106 clone AM34 prokMSA_id:084098 AY092107 clone AM1 prokMSA_id:083614 AY092108 clone AM40 prokMSA_id:084720 AY092109 clone AM61 prokMSA_id:085879 AY092110 clone AM9 prokMSA_id:083948 AY092111 clone AM26 prokMSA_id:084529 AY092112 clone AM31 prokMSA_id:082631 AY092113 clone AM66 prokMSA_id:083947 AY092114 clone AM11 prokMSA_id:085242 AY092115 clone AM33 prokMSA_id:083448 AY092116 clone AM30 prokMSA_id:083956 AY092117 clone AM84 prokMSA_id:083312 AY092118 clone AM85 prokMSA_id:084978 AY092119 clone AM74 prokMSA_id:083436 AY092120 clone AM70 prokMSA_id:086420 AY092121 clone AM94 prokMSA_id:084035 AY092122 clone AM17 prokMSA_id:085381 AY092123 clone AM89 prokMSA_id:086071 AY092124 clone AF26 prokMSA_id:083559 AY092125 clone AM19 prokMSA_id:085530 AY092126 clone AM2 prokMSA_id:085122 AY092127 clone AM32 prokMSA_id:084460 AY092128 clone AF4 prokMSA_id:085858 AY092129 clone AM79 prokMSA_id:084708 AY092130 clone AI94 prokMSA_id:083613 AY092131 clone AF1 prokMSA_id:085341 AY092132 clone AF10 prokMSA_id:082810 AY092133 clone AF100 prokMSA_id:084864 AY092134 clone AF77 prokMSA_id:085396 AY092135 clone AI76 prokMSA_id:084661 AY092136 clone AI2 prokMSA_id:083692 AY092137 clone AI5 prokMSA_id:083377 AY092138 clone AF67 prokMSA_id:084226 AY092139 clone AF43 prokMSA_id:085081 AY092140 clone AF25 prokMSA_id:084566 AY092141 clone AF60 prokMSA_id:083828 AY092142 clone AI75 prokMSA_id:085019 AY092143 clone AF99 prokMSA_id:084361 AY092144 clone AF81 prokMSA_id:084612 AY092145 clone AF92 prokMSA_id:082701 AY092392 clone BI136 prokMSA_id:060805 AY118149 Methanobacteriales clone OR-M9 prokMSA_id:080383 AY161261 clone SSADM_AG10 prokMSA_id:083548 AY228685 clone SSA4 prokMSA_id:083864 AY228687 clone SSA6 prokMSA_id:086200 AY228690 clone SSA9 prokMSA_id:083724 AY239509 clone CARB_ASS4 prokMSA_id:086018 AY239510 clone CARB_ASS5 prokMSA_id:083012 AY239512 clone CARB_ASS7 prokMSA_id:085075 AY239515 clone CARB_ASS10 prokMSA_id:083557 AY239529 clone CARB_AR2_5 prokMSA_id:084255 AY251026 euryarchaeote clone 15ar16 prokMSA_id:083781 AY256646 clone A2-129 prokMSA_id:097467 AY291551 DGGE gel bands 3 and 12 prokMSA_id:097769 AY291552 DGGE gel bands 4 8 9 13 19 21 and 23 prokMSA_id:096011 AY291556 DGGE gel bands 14 and 20 prokMSA_id:097827 AY291557 DGGE gel band 15 prokMSA_id:090509 AY311614 clone YRCB11 prokMSA_id:089247 AY311616 clone YRCB15 prokMSA_id:090154 AY311620 clone YRCB25 prokMSA_id:089592 AY311683 clone YRCD10 prokMSA_id:088548 AY311715 clone YRCE02 prokMSA_id:088176 AY311745 clone YRCE47 prokMSA_id:089887 AY311759 clone YRCE64 prokMSA_id:088784 AY311774 clone YRCF15 prokMSA_id:093408 AY368466 clone CM85 prokMSA_id:000197 D64025 symbiont of methanogen symbiont in termite gut. prokMSA_id:000195 D64026 symbiont of methanogen symbiont in termite gut. prokMSA_id:000084 D64027 symbiont of methanogen symbiont in termite gut. prokMSA_id:000194 D64028 symbiont of methanogen symbiont in termite gut. prokMSA_id:000076 D64029 symbiont of methanogen symbiont in termite gut. prokMSA_id:000132 D64030 symbiont of methanogen symbiont in termite gut. prokMSA_id:000116 D64031 symbiont of methanogen symbiont in termite gut. prokMSA_id:000196 M86386 endosymbiont of Metopus palaeformis. prokMSA_id:000085 NONE Methanobrevibacter ruminantium str. M-1 ATCC 35063 . prokMSA_id:000117 NONE Methanobrevibacter arboriphilicus str. DH1 DSM 1536. prokMSA_id:000080 U53419 Methanobacterium bryantii str. BKYH. prokMSA_id:000124 U55236 Methanobrevibacter sp. str. CW4C DSM 11995. prokMSA_id:000127 U55240 Methanobrevibacter sp. str. SH DSM 11976. prokMSA_id:000215 X99138 Methanobacterium sp. str. BRM9. prokMSA_id:000137 Y12592 Methanobacterium subterraneum str. 3067. prokMSA_id:000142 Y18731 str. 3543-10. prokMSA_id:000202 Y18732 Methanobacterium sp. str. 3544-4. prokMSA_id:000143 Y18733 str. 3544-9. prokMSA_id:000135 Y18734 Methanobacterium sp. str. 5544-3. prokMSA_id:000144 Y18735 str. 6132-1. prokMSA_id:000178 Y18736 Methanobacterium bryantii str. 6544-9. 1.1.2.2.2 MB.THERMOAUTOTROPHICUM_SUBGROUP 178 seqs 1.1.2.2.2.001 OTU 28 seqs prokMSA_id:000250 AB011331 clone TUG3. prokMSA_id:000233 AB020530 Methanobacterium thermoautotrophicum str. KHT-2. prokMSA_id:067147 AB084240 clone:LCA prokMSA_id:067146 AB084241 clone:LCB prokMSA_id:081334 AB104858 Methanothermobacter wolfeii prokMSA_id:000242 AE000666 Methanobacterium thermoautotrophicum str. delta H. prokMSA_id:000238 AE000666 Methanobacterium thermoautotrophicum str. delta H. prokMSA_id:044111 AE000930 Methanobacterium thermoautotrophicum from bases 1592014 to 1607566 section 136 of 148 of the complete genome prokMSA_id:045830 AE000940 Methanobacterium thermoautotrophicum from bases 1709212 to 1724499 section 146 of 148 of the complete genome prokMSA_id:071339 AF220342 Enrichment culture E21A2 prokMSA_id:095598 AY196660 Methanothermobacter thermautotrophicus strain delta H prokMSA_id:098338 AY196661 Methanothermobacter thermautotrophicus strain GC-1 prokMSA_id:049751 NC_000916 Methanobacterium thermoautotrophicum str. Delta H complete genome prokMSA_id:000223 X15364 Methanobacterium thermoautotrophicum str. Marburg. prokMSA_id:000234 X68711 Methanobacterium thermoautotrophicum str. THF. prokMSA_id:000241 X68712 Methanobacterium thermoautotrophicum str. Z-245 DSM 3720. prokMSA_id:000251 X68713 Methanobacterium thermoautotrophicum str. FTF. prokMSA_id:000226 X68714 Methanobacterium thermoautotrophicum str. FF1. prokMSA_id:000221 X68715 Methanobacterium thermoautotrophicum str. FF3. prokMSA_id:000219 X68716 Methanobacterium thermoautotrophicum str. CSM3. prokMSA_id:000222 X68717 Methanobacterium thermoautotrophicum str. CB12 OCM 36. prokMSA_id:000235 X68719 Methanobacterium thermoautotrophicum str. HN4. prokMSA_id:000239 X68720 Methanobacterium thermoautotrophicum str. delta H. prokMSA_id:000217 X89406 Methanobacterium wolfei. prokMSA_id:000236 X99046 Methanothermobacter defluvii str. ADZ VKM B-1962. prokMSA_id:000225 X99047 Methanothermobacter thermoflex str. IDZ VKM B-1963. prokMSA_id:000216 X99048 Methanothermobacter thermophilus str. M VKM B-1786. prokMSA_id:000227 Z37156 Methanobacterium thermoautotrophicum str. ZH3 DSM 9446. 1.1.2.2.2.002 OTU 2 seqs prokMSA_id:000249 AB019754 clone pMC1A4. prokMSA_id:072731 AF201361 euryarchaeote isolate DOURO7 1.1.2.2.2.003 OTU 4 seqs prokMSA_id:000245 AF119124 unnamed organism. prokMSA_id:000248 AF119140 unnamed organism. prokMSA_id:056767 AY165992 clone FZ1aA168 prokMSA_id:056753 AY166001 clone FZ2aA62 1.1.2.2.2.005 OTU 4 seqs prokMSA_id:035808 AF134381 BA1a2 prokMSA_id:020341 AF134386 TA1a6 prokMSA_id:000243 AF134387 clone TA1a9. prokMSA_id:094129 AY324382 clone F17.1ARC_A01 1.1.2.2.2.006 OTU 3 seqs prokMSA_id:000230 AJ131264 clone VAL2. prokMSA_id:000231 AJ131272 clone VAL40. prokMSA_id:000232 AJ131274 clone VAL28. 1.1.2.2.2.007 OTU 15 seqs prokMSA_id:078816 AB094534 clone:OHKA3.36 prokMSA_id:048616 AF134383 BA2e8 prokMSA_id:018834 AF134385 TA1b12 prokMSA_id:073864 AF134391 TA2e12 prokMSA_id:053542 AY053467 AT425_ArB7 prokMSA_id:095564 AY211684 euryarchaeote clone GoM GC185 501R prokMSA_id:095600 AY211689 euryarchaeote clone GoM GC234 004R prokMSA_id:095312 AY211702 euryarchaeote clone GoM GC234 603R prokMSA_id:098033 AY211705 euryarchaeote clone GoM GC234 609R prokMSA_id:098257 AY211706 euryarchaeote clone GoM GC234 614R prokMSA_id:098198 AY211707 euryarchaeote clone GoM GC234 616R prokMSA_id:096687 AY211727 euryarchaeote clone GoM GC234 610A prokMSA_id:093719 AY324374 clone GZfosARC_1C11 prokMSA_id:093665 AY324375 clone GZfosARC_25D1 prokMSA_id:093742 AY324378 clone BR34ARC_C03 1.1.2.2.2.008 OTU 1 seq prokMSA_id:036790 AF134382 BA1b1 1.1.2.2.2.009 OTU 1 seq prokMSA_id:058252 AF357890 MN16BT2-67 1.1.2.2.2.010 OTU 1 seq prokMSA_id:058249 AF357892 MN16BT2-69 1.1.2.2.2.011 OTU 1 seq prokMSA_id:058246 AF357894 MN16BT2-72 1.1.2.2.2.012 OTU 1 seq prokMSA_id:056092 AY166002 clone FZ2aA64 1.1.2.2.2.013 OTU 8 seqs prokMSA_id:056781 AY165980 clone FZ1aA12 prokMSA_id:056769 AY165989 clone FZ1aA151 prokMSA_id:056762 AY165994 clone FZ1aA231 prokMSA_id:056757 AY166000 clone FZ2aA60 prokMSA_id:056743 AY166011 clone FZ2bA36 prokMSA_id:056740 AY166014 clone FZ2bA46 prokMSA_id:056739 AY166015 clone FZ2bA48 prokMSA_id:056744 AY166028 clone FZ2bA167 1.1.2.2.2.014 OTU 1 seq prokMSA_id:056773 AY165982 clone FZ1aA21 1.1.2.2.2.015 OTU 1 seq prokMSA_id:056768 AY165983 clone FZ1aA51 1.1.2.2.2.016 OTU 1 seq prokMSA_id:056756 AY166003 clone FZ2aA5 1.1.2.2.2.017 OTU 1 seq prokMSA_id:056733 AY166021 clone FZ2bA106 1.1.2.2.2.018 OTU 1 seq prokMSA_id:061914 AJ310857 clone LKS8 1.1.2.2.2.019 OTU 3 seqs prokMSA_id:079047 AB094555 clone:OHKA10.11 prokMSA_id:078580 AB094559 clone:OHKA14.11 prokMSA_id:063129 AY093448 clone MA-A1-3 1.1.2.2.2.020 OTU 1 seq prokMSA_id:068283 AF361686 clone MN16BT2-79 1.1.2.2.2.021 OTU 1 seq prokMSA_id:068285 AF361684 clone MN16BT2-77 1.1.2.2.2.022 OTU 1 seq prokMSA_id:070928 AF220339 Enrichment culture E21A1 1.1.2.2.2.024 OTU 20 seqs prokMSA_id:058504 AB072723 clone:pHAuA-5 prokMSA_id:079040 AB094514 clone:OHKA1.2 prokMSA_id:079064 AB094516 clone:OHKA1.4 prokMSA_id:078701 AB094518 clone:OHKA1.8 prokMSA_id:078548 AB094521 clone:OHKA1.15 prokMSA_id:078866 AB094528 clone:OHKA1.43 prokMSA_id:078899 AB094531 clone:OHKA2.14 prokMSA_id:078558 AB094532 clone:OHKA2.33 prokMSA_id:078409 AB094550 clone:OHKA6.39 prokMSA_id:078691 AB094551 clone:OHKA6.41 prokMSA_id:078629 AB094552 clone:OHKA7.26 prokMSA_id:078919 AB094553 clone:OHKA7.31 prokMSA_id:000237 AF119128 unnamed organism. prokMSA_id:000246 AF119132 unnamed organism. prokMSA_id:000247 AF119133 unnamed organism. prokMSA_id:054762 AF424522 crenarchaeote MERTZ_0CM_79 prokMSA_id:056664 AY133348 clone OB3_33 prokMSA_id:092618 AY345180 clone 626-24 prokMSA_id:092819 AY345182 clone 626-28 prokMSA_id:093012 AY345185 clone 626-94 1.1.2.2.2.025 OTU 1 seq prokMSA_id:078970 AY182128 clone FZ3aA24 1.1.2.2.2.026 OTU 1 seq prokMSA_id:079028 AB094523 clone:OHKA1.18 1.1.2.2.2.027 OTU 1 seq prokMSA_id:079168 AB099934 sequences clone: IheA4-4 1.1.2.2.2.028 OTU 1 seq prokMSA_id:082762 AY226344 candidate division MSBL1 clone ABBA-14 1.1.2.2.2.029 OTU 1 seq prokMSA_id:083878 AB095141 clone:pCIRA-17 1.1.2.2.2.030 OTU 1 seq prokMSA_id:084085 AY226347 candidate division MSBL1 clone ABBA-35 1.1.2.2.2.031 OTU 1 seq prokMSA_id:085237 AJ495714 crenarchaeote isolate SA-ARCH25 1.1.2.2.2.032 OTU 1 seq prokMSA_id:085258 AY226350 candidate division MSBL1 clone ABBA-54 1.1.2.2.2.033 OTU 3 seqs prokMSA_id:093126 AY354114 clone pIR3AG07 prokMSA_id:093076 AY354120 clone pIR3AG06 prokMSA_id:092917 AY354125 clone pIR3AA03 1.1.2.2.2.034 OTU 2 seqs prokMSA_id:093322 AY360480 clone BSA2-305m prokMSA_id:093462 AY360481 clone BSA3-305m 1.1.2.2.2.999 poor quality 65 seqs prokMSA_id:085418 AB095125 clone:pCIRA-O prokMSA_id:000228 AF095262 Methanobacterium thermoautotrophicum str. Marburg. prokMSA_id:000220 AF095264 Methanobacterium thermaggregans OCM 141 . prokMSA_id:000244 AF134380 clone BA1a1. prokMSA_id:000224 AF134392 clone BA2F4fin. prokMSA_id:025661 AF193559 n41r prokMSA_id:071512 AF314245 clone ANME 15 prokMSA_id:073808 AF314246 clone ANME 14 prokMSA_id:072432 AF314247 clone ANME 11 prokMSA_id:058245 AF357893 MN16BT2-70 prokMSA_id:068286 AF361683 clone MN16BT2-73 prokMSA_id:068284 AF361685 clone MN16BT2-78 prokMSA_id:068282 AF361687 clone MN16BT2-80 prokMSA_id:068278 AF361688 clone MN16BT2-81 prokMSA_id:068281 AF361689 clone MN16BT2-82 prokMSA_id:068270 AF361694 clone MN13BT4-101 prokMSA_id:031348 AF376790 isolate MUAHR 3 prokMSA_id:022991 AF376792 isolate MUAHR 5 prokMSA_id:069946 AF412944 crenarchaeote clone BScra3 prokMSA_id:016679 AF424524 crenarchaeote MERTZ_2CM_365 prokMSA_id:064114 AF477914 clone 3-PML 8% pond prokMSA_id:059413 AF540858 clone DP10u34 prokMSA_id:059407 AF540866 clone ME10-2 prokMSA_id:059410 AF540867 clone ME141 prokMSA_id:061918 AJ310851 clone LKS2 prokMSA_id:083745 AJ495696 crenarchaeote isolate SA-ARCH3 prokMSA_id:086465 AJ495698 crenarchaeote isolate SA-ARCH5 prokMSA_id:085398 AJ495705 crenarchaeote isolate SA-ARCH13 prokMSA_id:059834 AY133350 clone OB3_60b prokMSA_id:056783 AY165965 clone FZ1aA255 prokMSA_id:056785 AY165966 clone FZ1aA161 prokMSA_id:056786 AY165967 clone FZ1aA165 prokMSA_id:056784 AY165968 clone FZ1aA162 prokMSA_id:056787 AY165969 clone FZ1aA171 prokMSA_id:056782 AY165970 clone FZ1aA11 prokMSA_id:056778 AY165971 clone FZ1aA153 prokMSA_id:056780 AY165972 clone FZ1aA63 prokMSA_id:056775 AY165974 clone FZ2bA57 prokMSA_id:056776 AY165975 clone FZ2bA194 prokMSA_id:056596 AY165976 clone FZ2bA83 prokMSA_id:056777 AY165977 clone FZ2bA104 prokMSA_id:056772 AY165979 clone FZ1aA1 prokMSA_id:055972 AY165984 clone FZ1aA53 prokMSA_id:056765 AY165985 clone FZ1aA55 prokMSA_id:056761 AY165986 clone FZ1aA56 prokMSA_id:056763 AY165987 clone FZ1aA58 prokMSA_id:056760 AY165988 clone FZ1aA59 prokMSA_id:056764 AY165991 clone FZ1aA167 prokMSA_id:056759 AY165993 clone FZ1aA169 prokMSA_id:056755 AY165996 clone FZ2aA31 prokMSA_id:056754 AY165997 clone FZ2aA4 prokMSA_id:056751 AY166005 clone FZ2aA35 prokMSA_id:056736 AY166017 clone FZ2bA59 prokMSA_id:056732 AY166022 clone FZ2bA107 prokMSA_id:056731 AY166023 clone FZ2bA111 prokMSA_id:055226 AY166033 clone FZ1aA166 prokMSA_id:078663 AY182126 clone FZ3aA21 prokMSA_id:079084 AY182127 clone FZ3aA11 prokMSA_id:078796 AY182130 clone FZ3bA103 prokMSA_id:078419 AY182132 clone FZ3bA125 prokMSA_id:078960 AY182133 clone FZ3bA121 prokMSA_id:091149 AY333330 isolate DGGE gel band SEQ11Z1 prokMSA_id:000229 NONE Methanobacterium thermoautotrophicum str. CB12 ATCC 43574. prokMSA_id:000218 X66789 Methanobacterium thermoautotrophicum str. delta H = . prokMSA_id:000240 X68718 Methanobacterium thermoautotrophicum str. SF-4. 1.1.3 METHANOMICROBACTERIA_AND_RELATIVES 2485 seqs 1.1.3.1 METHANOMICROBIALES 484 seqs 1.1.3.1.1 MCU.BOURGENSE_SUBGROUP 338 seqs 1.1.3.1.1.001 OTU 1 seq prokMSA_id:000314 AF107105 Methanoculleus MAB3 str. MAB3. 1.1.3.1.1.002 OTU 1 seq prokMSA_id:000313 AF107104 Methanoculleus MAB2 str. MAB2. 1.1.3.1.1.003 OTU 1 seq prokMSA_id:000312 AF107103 Methanoculleus MAB1 str. MAB1. 1.1.3.1.1.005 OTU 9 seqs prokMSA_id:035525 AF225594 clone AS00-25 prokMSA_id:045090 AF225601 clone AS00-33 prokMSA_id:051043 AF225635 clone AS08-03 prokMSA_id:042354 AF225679 clone AS17-18 prokMSA_id:000307 AJ236511 clone S15-30. prokMSA_id:036652 AJ244277 anaerobic methanogenic ET1-1 prokMSA_id:028111 AY063608 clone RST-13 prokMSA_id:000284 Y15395 clone ABS20. prokMSA_id:000285 Y15397 clone ABS22. 1.1.3.1.1.007 OTU 7 seqs prokMSA_id:000305 AB019757 clone pIVWA104. prokMSA_id:084548 AB095142 clone:pCIRA-3 prokMSA_id:065141 AY095663 OS2K-13 prokMSA_id:089977 AY288379 crenarchaeote 95B-131-1H prokMSA_id:089928 AY288407 euryarchaeote 97E-131-15 prokMSA_id:043058 U86502 marine pB1-149 prokMSA_id:050469 U86508 marine pB1-41 1.1.3.1.1.008 OTU 1 seq prokMSA_id:000303 AF126846 clone SYA-45. 1.1.3.1.1.010 OTU 1 seq prokMSA_id:000300 AF126863 clone SYA-133. 1.1.3.1.1.011 OTU 9 seqs prokMSA_id:000298 AB008853 unnamed organism. prokMSA_id:000299 AF033672 Methanocalculus halotolerans SEBR 4845. prokMSA_id:042125 AF172443 Methanocalculus taiwanense strain P2F9704a prokMSA_id:041198 AF321115 Methanocalculus sp. K1F9705c prokMSA_id:019259 AF347025 Methanocalculus sp. K1F9705b prokMSA_id:045899 AF411470 Methanocalculus halotolerans strain P2F9705 prokMSA_id:074785 AY026256 Methanocalculus sp. O1F9702c prokMSA_id:083974 AY234332 Methanocalculus chunshungensis prokMSA_id:083225 AY256630 clone A2-101 1.1.3.1.1.021 OTU 42 seqs prokMSA_id:026720 AB038795 Methanoculleus chikugoensis strain:MG62 prokMSA_id:091502 AB065297 Methanoculleus thermophilicus prokMSA_id:069300 AB065298 Methanoculleus oldenburgensis prokMSA_id:067141 AB084243 clone:LCD prokMSA_id:082879 AB092916 euryarchaeote clone:AA01 prokMSA_id:000309 AF015979 clone 2C87. prokMSA_id:000310 AF015985 clone 2MT196. prokMSA_id:000295 AF028693 Methanoculleus marisnigri str. CoCam. prokMSA_id:000268 AF050615 clone WCHA2-08. prokMSA_id:000311 AF157518 unnamed organism. prokMSA_id:000296 AF157519 unnamed organism. prokMSA_id:072477 AF220340 Enrichment culture E21B2 prokMSA_id:039151 AF220343 Enrichment culture E31B1 prokMSA_id:070145 AF531178 Methanoculleus submarinus prokMSA_id:000297 AJ133793 Methanoculleus sp. prokMSA_id:026465 AJ244287 anaerobic methanogenic E15-1 prokMSA_id:033933 AJ244289 anaerobic methanogenic E15-3 prokMSA_id:044296 AJ244296 anaerobic methanogenic E15-10 prokMSA_id:029601 AJ244301 anaerobic methanogenic E30-5 prokMSA_id:063729 AJ412773 clone DERR10 prokMSA_id:055959 AJ412775 clone DERR12 prokMSA_id:063723 AJ412782 clone DERS4 prokMSA_id:063713 AJ412785 clone DERS7 prokMSA_id:073658 AJ493093 clone LK15 prokMSA_id:069637 AJ493094 clone LK8 prokMSA_id:069714 AJ493095 clone LK13 prokMSA_id:073005 AJ493096 clone LK45 prokMSA_id:069442 AJ493108 clone LK23 prokMSA_id:044094 AY062218 clone GW60-13-1 prokMSA_id:048306 AY062219 clone GW60-13-24 prokMSA_id:016936 AY062220 clone GW60-13-38 prokMSA_id:045011 AY062221 clone GW60-13-3 prokMSA_id:044000 AY062222 clone GW60-13-4 prokMSA_id:048761 AY062225 clone GW70-10-10 prokMSA_id:046958 AY062227 clone GW70-10-16 prokMSA_id:046448 AY062228 clone GW70-10-18 prokMSA_id:044379 AY062230 clone GW70-10-35 prokMSA_id:030915 AY062235 clone GW70-20-6 prokMSA_id:098731 AY196674 Methanoculleus bourgensis prokMSA_id:000304 M59129 Methanoculleus thermophilicus str. TCI DSM 3915. prokMSA_id:000294 M59134 Methanoculleus marisnigri str. JR1 ATCC 35101 . prokMSA_id:000267 Y16382 Methanoculleus palmolei str. INSLUZ DSM 4273 . 1.1.3.1.1.023 OTU 2 seqs prokMSA_id:000261 AF142979 clone ACE4_A. prokMSA_id:000258 AF142980 clone BURTON24_A. 1.1.3.1.1.026 OTU 3 seqs prokMSA_id:050770 AB034182 rumen methanogen Hole9 prokMSA_id:095411 AY196679 Methanomicrobium mobile prokMSA_id:000257 M59142 Methanomicrobium mobile str. BP DSM 1539 . 1.1.3.1.1.027 OTU 1 seq prokMSA_id:000256 Z29435 Methanoplanus endosymbiosus str. MC1 GDVogels DSM 3599 . 1.1.3.1.1.033 OTU 2 seqs prokMSA_id:062883 AB077218 Methanomicrobiales clone:KuA8 prokMSA_id:018762 AF447154 clone TDC-AR4 1.1.3.1.1.034 OTU 1 seq prokMSA_id:020227 AY016005 marine euryarchaeote dh148-W17 1.1.3.1.1.035 OTU 1 seq prokMSA_id:022583 AF225642 clone AS08-10 1.1.3.1.1.036 OTU 1 seq prokMSA_id:023669 AF225674 clone AS17-12 1.1.3.1.1.037 OTU 1 seq prokMSA_id:026253 AY053471 AT425_ArD10 1.1.3.1.1.039 OTU 6 seqs prokMSA_id:084991 AB095139 clone:pCIRA-15 prokMSA_id:000306 AF122002 str. DCM875. prokMSA_id:028555 AF223133 euryarchaeote AT-200_29 prokMSA_id:045211 AF223142 euryarchaeote ME-450_38 prokMSA_id:050813 AF290531 marine AEGEAN_60 prokMSA_id:085641 AY225423 clone AFRICA_1/6-5 1.1.3.1.1.042 OTU 1 seq prokMSA_id:030524 U86455 marine pN1-2 1.1.3.1.1.044 OTU 9 seqs prokMSA_id:078504 AB094520 clone:OHKA1.10 prokMSA_id:078655 AB094527 clone:OHKA1.35 prokMSA_id:078518 AB094529 clone:OHKA1.44 prokMSA_id:000253 AF015971 clone 2C25. prokMSA_id:000254 AF015978 clone 2C84. prokMSA_id:000255 AF015992 clone 2MT8. prokMSA_id:034486 AJ131275 euryarchaeote VAL147 clone VAL147 prokMSA_id:059075 AJ294862 19b-26 clone 19b-26 prokMSA_id:058995 AJ299201 20c-52 clone 20c-52 1.1.3.1.1.045 OTU 1 seq prokMSA_id:037655 AF015970 2C174 1.1.3.1.1.046 OTU 1 seq prokMSA_id:051522 AF229776 TA03 1.1.3.1.1.047 OTU 1 seq prokMSA_id:055286 AJ310866 clone LKS17 1.1.3.1.1.048 OTU 1 seq prokMSA_id:061903 AJ310864 clone LKS15 1.1.3.1.1.049 OTU 1 seq prokMSA_id:061908 AJ310867 clone LKS18 1.1.3.1.1.052 OTU 1 seq prokMSA_id:061911 AJ310858 clone LKS9 1.1.3.1.1.053 OTU 1 seq prokMSA_id:062884 AB077220 Methanomicrobiales clone:KuA10 1.1.3.1.1.054 OTU 2 seqs prokMSA_id:063724 AJ412783 clone DERS5 prokMSA_id:063714 AJ412784 clone DERS6 1.1.3.1.1.055 OTU 107 seqs prokMSA_id:062887 AB077222 Methanomicrobiales clone:KuA12 prokMSA_id:000266 AF009219 Methanogenium frigidum OCM 469. prokMSA_id:026952 AF015968 2C130 prokMSA_id:024448 AF015969 2C169 prokMSA_id:000263 AF015983 clone 2MT120. prokMSA_id:000269 AF050617 clone WCHD3-07. prokMSA_id:000271 AF056362 unnamed organism. prokMSA_id:000293 AF126835 clone SYA-1. prokMSA_id:000291 AF126844 clone SYA-32. prokMSA_id:000290 AF126845 clone SYA-39. prokMSA_id:000302 AF126851 clone SYA-75. prokMSA_id:000289 AF126853 clone SYA-78. prokMSA_id:000288 AF126854 clone SYA-80. prokMSA_id:000287 AF126855 clone SYA-81. prokMSA_id:000301 AF126857 clone SYA-106. prokMSA_id:000286 AF126861 clone SYA-127. prokMSA_id:000264 AF142976 Methanogenium ACE1_A. prokMSA_id:072379 AF220336 O23D1 prokMSA_id:031414 AF220337 O23E2 prokMSA_id:049083 AF220338 O23C7 prokMSA_id:030145 AF229775 TA02 prokMSA_id:073019 AF374276 euryarchaeote EHB112 prokMSA_id:039372 AF419645 CS_R002 prokMSA_id:050440 AF423187 Toluene-degrading methanogenic consortium M1 prokMSA_id:028545 AF424766 19-1 prokMSA_id:037119 AF424773 57-1 prokMSA_id:070790 AF481341 clone Fuku06 prokMSA_id:072498 AF481342 clone Fuku07 prokMSA_id:073515 AF481343 clone Fuku08 prokMSA_id:048602 AJ131263 euryarchaeote VAL1 clone VAL1 prokMSA_id:023580 AJ131268 euryarchaeote VAL47 clone VAL47 prokMSA_id:000280 AJ131269 clone VAL78. prokMSA_id:000281 AJ131273 clone VAL9. prokMSA_id:047590 AJ132648 methanogenic endosymbiont of Caenomorpha-like sp. 1 prokMSA_id:042593 AJ132649 methanogenic endosymbiont of Caenomorpha-like sp. 4 prokMSA_id:046800 AJ132650 methanogenic endosymbiont of Caenomorpha-like sp. 8 prokMSA_id:026923 AJ132651 methanogenic endosymbiont of Caenomorpha sp. 10 prokMSA_id:074530 AJ132652 methanogenic endosymbiont of Caenomorpha sp. 2 prokMSA_id:044469 AJ132653 methanogenic endosymbiont of Caenomorpha sp. prokMSA_id:042084 AJ132654 methanogenic endosymbiont of Brachonella sp. prokMSA_id:049400 AJ132655 methanogenic endosymbiont of Brachonella sp. prokMSA_id:000282 AJ249243 clone R8. prokMSA_id:000283 AJ249244 clone R9. prokMSA_id:061919 AJ310850 clone LKS1 prokMSA_id:061915 AJ310852 clone LKS3 prokMSA_id:061917 AJ310853 clone LKS4 prokMSA_id:061916 AJ310854 clone LKS5 prokMSA_id:061910 AJ310859 clone LKS10 prokMSA_id:061909 AJ310861 clone LKS12 prokMSA_id:061905 AJ310862 clone LKS13 prokMSA_id:055446 AJ310863 clone LKS14 prokMSA_id:056195 AJ310865 clone LKS16 prokMSA_id:061904 AJ310868 clone LKS19 prokMSA_id:061906 AJ310869 clone LKS20 prokMSA_id:061902 AJ310870 clone LKS21 prokMSA_id:061901 AJ310871 clone LKS22 prokMSA_id:061897 AJ310874 clone LKS25 prokMSA_id:061895 AJ310875 clone LKS26 prokMSA_id:061893 AJ310876 clone LKS27 prokMSA_id:061894 AJ310877 clone LKS28 prokMSA_id:061892 AJ310878 clone LKS29 prokMSA_id:061889 AJ310879 clone LKS30 prokMSA_id:066889 AJ312019 clone SHC-88 prokMSA_id:077921 AJ459899 Methanomicrobiales clone AMC 1 M21 prokMSA_id:081899 AJ548946 methanogenic clone FenZ- prokMSA_id:081750 AJ548947 methanogenic clone FenI- prokMSA_id:082322 AJ548948 methanogenic clone FenH1- prokMSA_id:081349 AJ548949 methanogenic clone FenW- prokMSA_id:081531 AJ548950 methanogenic clone FenR- prokMSA_id:081656 AJ548951 methanogenic clone FenN- prokMSA_id:081538 AJ548952 methanogenic clone FenK- prokMSA_id:081190 AJ548953 methanogenic clone FenH- prokMSA_id:064338 AY102915 clone BCM3S-8A prokMSA_id:064339 AY102916 clone BCM3S-14A prokMSA_id:078658 AY175385 clone LH-06 prokMSA_id:078554 AY175386 clone LH-07 prokMSA_id:078920 AY175387 clone MB-01 prokMSA_id:078631 AY175388 clone MB-02 prokMSA_id:078754 AY175389 clone MB-02b prokMSA_id:079086 AY175390 clone MB-03 prokMSA_id:078612 AY175393 clone MB-06 prokMSA_id:078492 AY175398 clone MB-10 prokMSA_id:078466 AY175403 clone MB-16 prokMSA_id:078683 AY175404 clone MB-17 prokMSA_id:078517 AY177806 Methanogenium sp. clone LH14 prokMSA_id:078642 AY177807 Methanogenium sp. clone LH23 prokMSA_id:078452 AY177809 Methanogenium sp. clone LH26 prokMSA_id:078486 AY177813 Methanogenium sp. clone SB13 prokMSA_id:078953 AY177815 Methanogenium sp. clone SB18 prokMSA_id:079331 AY187063 Methanomicrobiales prokMSA_id:098537 AY196678 Methanolacinia paynteri prokMSA_id:096343 AY196681 Methanoplanus petrolearius prokMSA_id:096275 AY211723 Methanomicrobiales clone GoM GC234 022A prokMSA_id:096568 AY211724 Methanomicrobiales clone GoM GC033A prokMSA_id:096441 AY211728 Methanomicrobiales clone GoM GC234 633A prokMSA_id:085604 AY251027 euryarchaeote clone 15ar18 prokMSA_id:092129 AY341308 ZAR76 prokMSA_id:092193 AY341309 ZAR78 prokMSA_id:000252 M59143 Methanoplanus limicola str. M3 DSM 2279 . prokMSA_id:000260 U76631 Methanoplanus petrolearius SEBR 4847 . prokMSA_id:000273 Y18080 clone Rot1. prokMSA_id:000274 Y18081 clone Rot2. prokMSA_id:000275 Y18084 clone Rot6. prokMSA_id:000276 Y18085 clone Rot7. prokMSA_id:000277 Y18088 clone Rot12. prokMSA_id:000278 Y18093 clone Rot24. prokMSA_id:000279 Y18095 clone Rot26. 1.1.3.1.1.056 OTU 2 seqs prokMSA_id:079078 AY175380 clone LH-01 prokMSA_id:078540 AY175382 clone LH-03 1.1.3.1.1.057 OTU 1 seq prokMSA_id:083199 AY256631 clone A2-108 1.1.3.1.1.058 OTU 1 seq prokMSA_id:092160 AY341270 ZAR101 1.1.3.1.1.059 OTU 1 seq prokMSA_id:092351 AY341306 ZAR75 1.1.3.1.1.060 OTU 1 seq prokMSA_id:093095 AY341311 ZAR82 1.1.3.1.1.061 OTU 1 seq prokMSA_id:094502 AJ583384 clone S15A-MN175A 1.1.3.1.1.062 OTU 1 seq prokMSA_id:097497 AY211693 Methanomicrobiales clone GoM GC234 015R 1.1.3.1.1.999 poor quality 114 seqs prokMSA_id:019264 AB035624 sheep rumen methanogen clone 19 prokMSA_id:031665 AB035628 sheep rumen methanogen clone 34 prokMSA_id:044117 AB035632 sheep rumen methanogen clone 46 prokMSA_id:028725 AB035634 sheep rumen methanogen clone 48 prokMSA_id:017305 AB035636 sheep rumen methanogen clone 52 prokMSA_id:028734 AB046190 HA05 prokMSA_id:022300 AB046199 HA55 prokMSA_id:039780 AB055985 WSB-3 prokMSA_id:026855 AB055987 WSB-5 prokMSA_id:032097 AB055994 WSB-12 prokMSA_id:036352 AB055995 WSB-13 prokMSA_id:016283 AB055998 WSB-16 prokMSA_id:029847 AB056004 AM-1 prokMSA_id:016528 AB056013 AM-10 prokMSA_id:025931 AB056016 AM-13 prokMSA_id:030818 AB056017 AM-14 prokMSA_id:040310 AB056022 AM-19 prokMSA_id:032200 AB056033 OS-8 prokMSA_id:033666 AB056034 OS-9 prokMSA_id:032746 AB056037 OS-12 prokMSA_id:039739 AB056038 OS-13 prokMSA_id:022316 AB056040 OS-15 prokMSA_id:030469 AB056041 OS-16 prokMSA_id:027240 AB056048 OS-23 prokMSA_id:052876 AB056049 OS-24 prokMSA_id:055395 AB077219 Methanoculleus sp. clone:KuA9 prokMSA_id:089801 AB113837 clone:E2-5a prokMSA_id:093701 AB119561 Methanomicrobiales clone:ESYB5 prokMSA_id:000270 AF056360 unnamed organism. prokMSA_id:000272 AF056368 unnamed organism. prokMSA_id:000317 AF095269 Methanoculleus bourgensis str. MS2. prokMSA_id:000308 AF095270 Methanoculleus olentangyi str. RC/ER OCM 52 . prokMSA_id:000315 AF107106 Methanoculleus BA1 str. BA1. prokMSA_id:000292 AF126836 clone SYA-5. prokMSA_id:027204 AF355815 33-P73A98 prokMSA_id:070713 AF374275 euryarchaeote EHB93 prokMSA_id:072572 AF374277 euryarchaeote EHB158 prokMSA_id:074196 AF374278 euryarchaeote EHB154 prokMSA_id:072381 AF374279 euryarchaeote EHB156 prokMSA_id:028508 AF376797 isolate MUAHR 10 prokMSA_id:029292 AF473903 euryarchaeote r-5_06C prokMSA_id:071615 AF481345 clone Fuku10 prokMSA_id:066225 AF509437 Methanospirillum hungatei clone 10e prokMSA_id:056516 AF509439 Methanoculleus palmolei clone 12a prokMSA_id:066222 AF509443 Methanoculleus palmolei clone 19f prokMSA_id:066220 AF509444 Methanoculleus palmolei clone 1a prokMSA_id:066218 AF509445 Methanosaeta concilii clone 23g prokMSA_id:055255 AF509447 Methanoculleus palmolei clone 2a prokMSA_id:066213 AF509453 Methanoculleus palmolei clone 44i prokMSA_id:066215 AF509454 Methanoculleus palmolei clone 45i prokMSA_id:066206 AF509456 Methanocorpusculum bavaricum clone 50i prokMSA_id:066210 AF509457 Methanocorpusculum bavaricum clone 51i prokMSA_id:066209 AF509458 Methanocorpusculum bavaricum clone 52j prokMSA_id:066207 AF509459 Methanocorpusculum bavaricum clone 53j prokMSA_id:066208 AF509461 Methanocorpusculum bavaricum clone 22 prokMSA_id:066204 AF509462 Methanocorpusculum bavaricum clone 23 prokMSA_id:056200 AF509463 Methanocorpusculum bavaricum clone 24 prokMSA_id:064546 AF515502 euryarchaeote clone PPArcW2 prokMSA_id:071974 AJ239988 euryarchaeote strain DGGE band CIARC-1 prokMSA_id:072574 AJ240006 euryarchaeote strain DGGE band VIARC-3 prokMSA_id:017593 AJ287716 euryarchaeote a60ev prokMSA_id:036225 AJ287717 euryarchaeote a118ev prokMSA_id:044305 AJ305064 63-A3 clone 63-A3 prokMSA_id:072063 AJ306409 methanogen CIBARC-1 DGGE band CIBARC-1 prokMSA_id:073773 AJ306411 methanogen CRARC-3 DGGE band CRARC-3 prokMSA_id:071746 AJ306414 methanogen VIARC-0 DGGE band VIARC-0 prokMSA_id:068420 AJ306415 methanogen VIARC-4 DGGE band VIARC-4 prokMSA_id:073907 AJ308908 euryarchaeote clone ARS1-c13 prokMSA_id:066896 AJ312014 clone SHB-200 prokMSA_id:069616 AJ493097 clone LK9 prokMSA_id:071365 AJ493098 clone LK4 prokMSA_id:069299 AJ493099 clone LK16 prokMSA_id:069519 AJ493100 clone LK47 prokMSA_id:069413 AJ493101 clone LK55 prokMSA_id:070246 AJ493102 clone LK14 prokMSA_id:058537 AJ493103 clone LK26 prokMSA_id:058538 AJ493104 clone LK50 prokMSA_id:058529 AJ493105 clone LK6 prokMSA_id:058535 AJ493106 clone LK30 prokMSA_id:058533 AJ493107 clone LK49 prokMSA_id:058534 AJ493109 clone LK31 prokMSA_id:058532 AJ493110 clone LK28 prokMSA_id:058526 AJ493119 clone LK38 prokMSA_id:074120 AY032988 ASDS8 prokMSA_id:072843 AY055766 clone Gain7 prokMSA_id:082526 AY092162 clone AF3 prokMSA_id:083267 AY092164 clone AF79 prokMSA_id:086230 AY092166 clone AF39 prokMSA_id:083179 AY092167 clone AI83 prokMSA_id:082650 AY092168 clone AF56 prokMSA_id:085982 AY092169 clone AF5 prokMSA_id:060808 AY118147 Methanomicrobiales clone OR-M7 prokMSA_id:084954 AY226374 clone DBBA-194 prokMSA_id:088952 AY288385 euryarchaeote 96C-131-14 prokMSA_id:089606 AY288387 euryarchaeote 96C-235-1B prokMSA_id:088826 AY288395 euryarchaeote 97D-131-13 prokMSA_id:088642 AY288406 euryarchaeote 97D-235-09 prokMSA_id:089158 AY288408 euryarchaeote 97E-131-20 prokMSA_id:097187 AY291549 DGGE gel bands 1 and 11 prokMSA_id:096966 AY291558 DGGE gel band 18 prokMSA_id:090666 AY294409 clone Stme4 prokMSA_id:089864 AY294411 clone Stme6 prokMSA_id:090496 AY294415 clone Stme2 prokMSA_id:092159 AY341310 ZAR81 prokMSA_id:092768 AY341312 ZAR83 prokMSA_id:092099 AY341313 ZAR88 prokMSA_id:092727 AY341314 ZAR89 prokMSA_id:093802 AY368461 clone CM20 prokMSA_id:000262 M59130 Methanogenium cariaci str. JR1 ATCC 35093 . prokMSA_id:000265 M59131 Methanogenium organophilum prokMSA_id:000316 NONE Methanoculleus bourgense str. MS2 ATCC 43281 . prokMSA_id:000318 NONE Methanoculleus olentangyi str. RC/ER ATCC 35293 . prokMSA_id:071210 U78205 euryarchaeote obtained from Santa Barbara Channel prokMSA_id:000259 X99139 Methanobacterium sp. str. BRM16. 1.1.3.1.2 MF.TATIONIS_SUBGROUP 31 seqs 1.1.3.1.2.001 OTU 2 seqs prokMSA_id:000331 AF126849 clone SYA-70. prokMSA_id:000330 AF126860 clone SYA-125. 1.1.3.1.2.002 OTU 6 seqs prokMSA_id:022804 AF262035 Methanofollis sp. N2F9704 prokMSA_id:043996 AY062223 clone GW60-13-42 prokMSA_id:096483 AY196677 Methanofollis liminatans prokMSA_id:084038 AY256632 clone S2L-106 prokMSA_id:000328 Y16428 Methanofollis liminatans str. GKZPZ DSM 4140 . prokMSA_id:000329 Y16429 Methanofollis liminatans DSM 10196. 1.1.3.1.2.003 OTU 1 seq prokMSA_id:000320 Z29437 symbiont of Plagiopyla nasuta. 1.1.3.1.2.004 OTU 6 seqs prokMSA_id:062885 AB077221 Methanomicrobiales clone:KuA11 prokMSA_id:077401 AF524852 K-4a2 prokMSA_id:078287 AJ459898 Methanomicrobiales clone AMC 2 MB33 prokMSA_id:078261 AJ459900 Methanomicrobiales clone AEC 1 MB51 prokMSA_id:078931 AY175406 clone MB-19 prokMSA_id:000319 L48407 Methanospirillum sp. str. R10. 1.1.3.1.2.005 OTU 1 seq prokMSA_id:088152 AY297991 clone TA55_Ar_24 1.1.3.1.2.999 poor quality 15 seqs prokMSA_id:000323 AF045177 clone Winarc150. prokMSA_id:000324 AF045178 clone Winarc31. prokMSA_id:000325 AF045179 clone Winarc41. prokMSA_id:000326 AF045180 clone Winarc45. prokMSA_id:000327 AF045181 clone Winarc7. prokMSA_id:000334 AF095271 Methanofollis liminatans str. GKZPZ DSM 4140 . prokMSA_id:000333 AF095272 Methanofollis tationis DSM 2702 . prokMSA_id:000332 AF126840 clone SYA-13. prokMSA_id:056365 AF509438 Methanoculleus palmolei clone 11f prokMSA_id:073834 AJ296596 DGGE band PSARC-1 prokMSA_id:077659 AJ459897 Methanomicrobiales clone AED 3 DGGE A19 prokMSA_id:084116 AY092163 clone AF6 prokMSA_id:085882 AY092165 clone AF7 prokMSA_id:000321 L09056 clone CY 24. prokMSA_id:000322 NONE Methanofollis tationis DSM 2702 . 1.1.3.1.3 MSP.HUNGATEI_SUBGROUP 63 seqs 1.1.3.1.3.001 OTU 1 seq prokMSA_id:000345 AF126847 clone SYA-50. 1.1.3.1.3.002 OTU 1 seq prokMSA_id:000344 AF126852 clone SYA-77. 1.1.3.1.3.004 OTU 3 seqs prokMSA_id:000340 AB009823 clone MNt1. prokMSA_id:000341 AB009824 clone MNt2. prokMSA_id:000342 AB009825 clone MPn1. 1.1.3.1.3.005 OTU 1 seq prokMSA_id:000338 AF056366 unnamed organism. 1.1.3.1.3.007 OTU 27 seqs prokMSA_id:032520 AB050215 SAGMA-J2 prokMSA_id:030553 AB050235 SAGMA-4 prokMSA_id:027481 AB050237 SAGMA-7 prokMSA_id:044539 AB062404 Methanogen sp. TM20-1 prokMSA_id:000337 AF056361 unnamed organism. prokMSA_id:000343 AJ133792 Methanospirillum sp. prokMSA_id:043804 AJ288312 clone AC43 prokMSA_id:046784 AJ288319 clone AC91 prokMSA_id:063735 AJ412764 clone DERR1 prokMSA_id:063736 AJ412765 clone DERR2 prokMSA_id:063731 AJ412766 clone DERR3 prokMSA_id:063734 AJ412767 clone DERR4 prokMSA_id:063733 AJ412768 clone DERR5 prokMSA_id:063730 AJ412769 clone DERR6 prokMSA_id:063732 AJ412770 clone DERR7 prokMSA_id:055292 AJ412771 clone DERR8 prokMSA_id:063728 AJ412774 clone DERR11 prokMSA_id:063722 AJ412776 clone DERR13 prokMSA_id:063725 AJ412777 clone DERR14 prokMSA_id:063726 AJ412778 clone DERR15 prokMSA_id:056053 AJ412787 clone DERS9 prokMSA_id:063715 AJ412789 clone DERS11 prokMSA_id:063710 AJ412792 clone DERS14 prokMSA_id:097855 AY196683 Methanospirillum hungatei prokMSA_id:086063 AY231360 clone AR2_5 prokMSA_id:083147 AY256638 clone S2L-101 prokMSA_id:000336 M60880 Methanospirillum hungatei str. JF1 DSM 864 . 1.1.3.1.3.008 OTU 1 seq prokMSA_id:061912 AJ310855 clone LKS6 1.1.3.1.3.009 OTU 1 seq prokMSA_id:063727 AJ412772 clone DERR9 1.1.3.1.3.010 OTU 1 seq prokMSA_id:095762 AY211721 Methanomicrobiales clone GoM GC234 009A 1.1.3.1.3.999 poor quality 27 seqs prokMSA_id:076311 AB062300 methanogenic symbiont ST157 prokMSA_id:085847 AB092917 euryarchaeote clone:BA03 prokMSA_id:000339 AF056367 unnamed organism. prokMSA_id:031323 AF293488 euryarchaeote clone P4b-Ar-16 prokMSA_id:051769 AF293498 euryarchaeote clone P4b-Ar-29 prokMSA_id:048345 AF293501 euryarchaeote clone P4b-Ar-4 prokMSA_id:041857 AF293563 euryarchaeote clone P3-Ar-18 prokMSA_id:038668 AF293564 euryarchaeote clone P3-Ar-19 prokMSA_id:035936 AF293565 euryarchaeote clone P3-Ar-20 prokMSA_id:035732 AF293570 euryarchaeote clone P3-Ar-25 prokMSA_id:034297 AF293574 euryarchaeote clone P3-Ar-3 prokMSA_id:047731 AF293577 euryarchaeote clone P3-Ar-7 prokMSA_id:048450 AF293589 euryarchaeote clone P3-Ar-30 prokMSA_id:042023 AF376799 isolate MUAHR 12 prokMSA_id:037326 AF447153 clone TDC-AR3 prokMSA_id:066224 AF509436 Methanospirillum hungatei clone 10a prokMSA_id:058525 AJ493118 clone LK33 prokMSA_id:074271 AY055764 clone Gain3 prokMSA_id:070354 AY055768 clone Alth2 prokMSA_id:090692 AY294413 clone Stme8 prokMSA_id:093247 AY368467 clone CM82 prokMSA_id:096806 AY422333 Methanogenic F1/P-1 prokMSA_id:096517 AY422334 Methanogenic F4/P-1 prokMSA_id:097667 AY422335 Methanogenic F4/B-1 prokMSA_id:097296 AY422336 Methanogenic F1/B-1 prokMSA_id:000335 L09055 clone CY 104. prokMSA_id:000346 L09059 clone CY 49. 1.1.3.1.4 MCR.PARVUM_SUBGROUP 52 seqs 1.1.3.1.4.002 OTU 3 seqs prokMSA_id:000347 M96976 symbiont of Trimyema compressa. prokMSA_id:000349 Z13957 symbiont of archaeobacterial symbiont of Metopus contortus. prokMSA_id:000348 Z16412 symbiont of archaeobacterial symbiont of Trimyema sp. 1.1.3.1.4.006 OTU 19 seqs prokMSA_id:039103 AB056679 equine intestinal clone:YT28 prokMSA_id:000357 AF157520 unnamed organism. prokMSA_id:071599 AF419634 C1_R002 prokMSA_id:066890 AJ312018 clone SHC-268 prokMSA_id:031702 AJ408266 equine intestinal archaeal sp. DL11 clone DL11 prokMSA_id:045254 AY029298 euryarchaeote Arc84 prokMSA_id:039974 AY057068 Methanocorpusculum parvum strain IF9601b prokMSA_id:097068 AY196676 Methanocorpusculum bavaricum prokMSA_id:084307 AY231351 clone AR1R2_1 prokMSA_id:084212 AY231353 clone AR1R2_3 prokMSA_id:086048 AY231354 clone AR1R2_4 prokMSA_id:086278 AY231355 clone AR1_5 prokMSA_id:084012 AY231361 clone AR2_6 prokMSA_id:085040 AY231364 clone AR2_10 prokMSA_id:084058 AY239520 clone CARB_AR1_4 prokMSA_id:083370 AY260434 Methanocorpusculum sp. MSP prokMSA_id:086427 AY260435 Methanocorpusculum parvum prokMSA_id:085117 AY260436 Methanocorpusculum labreanum prokMSA_id:092733 AY341307 ZAR11 1.1.3.1.4.007 OTU 1 seq prokMSA_id:084703 AY231363 clone AR2_8 1.1.3.1.4.008 OTU 1 seq prokMSA_id:092492 AY341317 ZAR20 1.1.3.1.4.009 OTU 1 seq prokMSA_id:092887 AY341315 ZAR7 1.1.3.1.4.010 OTU 1 seq prokMSA_id:092910 AY341318 ZAR96 1.1.3.1.4.999 poor quality 26 seqs prokMSA_id:000351 AB024043 Methanobrevibacter methanogenic symbiont RS105. prokMSA_id:076790 AB062301 methanogenic symbiont ST131 prokMSA_id:075506 AB062302 methanogenic symbiont PA127 prokMSA_id:077051 AB062303 methanogenic symbiont ST104 prokMSA_id:076282 AB062304 methanogenic symbiont ST152 prokMSA_id:075579 AB062305 methanogenic symbiont PA123 prokMSA_id:000355 AF042197 Methanocorpusculum bavaricum str. SZSXXZ DSM 4179 . prokMSA_id:000354 AF095266 Methanocorpusculum bavaricum str. SZSXXZ DSM 4179 . prokMSA_id:000353 AF095267 Methanocorpusculum labreanum str. Z DSM 4855 . prokMSA_id:000352 AF095268 Methanocorpusculum sinense str. China Z DSM 4274 . prokMSA_id:070329 AF374274 euryarchaeote EHB214 prokMSA_id:034398 AF376791 isolate MUAHR 4 prokMSA_id:025498 AF376793 isolate MUAHR 6 prokMSA_id:058531 AJ493111 clone LK10 prokMSA_id:058530 AJ493112 clone LK35 prokMSA_id:058528 AJ493113 clone LK2 prokMSA_id:086016 AY231359 clone AR1_10 prokMSA_id:083896 AY231362 clone AR2_7 prokMSA_id:082638 AY239517 clone CARB_AR1_1 prokMSA_id:084213 AY239519 clone CARB_AR1_3 prokMSA_id:085920 AY239522 clone CARB_AR1_6 prokMSA_id:083230 AY280649 clone G3-14 prokMSA_id:093046 AY341316 ZAR8 prokMSA_id:000358 L09058 clone CY 46. prokMSA_id:000356 M59147 Methanocorpusculum parvum str. XII ATCC 43721 . prokMSA_id:000350 NONE Methanocorpusculum labreanum str. Z ATCC 43576 . 1.1.3.2 METHANOSARCINALES 1017 seqs 1.1.3.2.1 METHANOSARCINA_AND_RELATIVES 686 seqs 1.1.3.2.1.001 OTU 1 seq prokMSA_id:055228 AY166030 clone FZ2bA209 1.1.3.2.1.003 OTU 17 seqs prokMSA_id:000473 AB009822 clone MOf1. prokMSA_id:000474 AB009826 clone MPn4. prokMSA_id:050674 AF293490 euryarchaeote clone P4b-Ar-18 prokMSA_id:023609 AF293507 euryarchaeote clone P1-Ar-1 prokMSA_id:016838 AF293508 euryarchaeote clone P1-Ar-10 prokMSA_id:044162 AF293514 euryarchaeote clone P1-Ar-2 prokMSA_id:032888 AF293515 euryarchaeote clone P1-Ar-3 prokMSA_id:021448 AF293516 euryarchaeote clone P1-Ar-4 prokMSA_id:046877 AF293517 euryarchaeote clone P1-Ar-5 prokMSA_id:018969 AF293518 euryarchaeote clone P1-Ar-6 prokMSA_id:039139 AF293519 euryarchaeote clone P1-Ar-7 prokMSA_id:050358 AF293520 euryarchaeote clone P1-Ar-8 prokMSA_id:036045 AF293525 euryarchaeote clone P1-Ar-16 prokMSA_id:021910 AF293526 euryarchaeote clone P1-Ar-17 prokMSA_id:020977 AF293569 euryarchaeote clone P3-Ar-24 prokMSA_id:000516 AJ238002 Methanomicrococcus blatticolus str. PA. prokMSA_id:095892 AY196680 Methanimicrococcus blatticola 1.1.3.2.1.004 OTU 7 seqs prokMSA_id:036837 AB034189 rumen methanogen 2 prokMSA_id:000493 AF029206 clone ARC9. prokMSA_id:000494 AF029207 clone ARC31. prokMSA_id:000495 AF029208 clone ARC45. prokMSA_id:000456 AF029209 clone ARC46. prokMSA_id:000496 AF029210 clone ARC63. prokMSA_id:000497 AF029211 clone ARC64. 1.1.3.2.1.005 OTU 33 seqs prokMSA_id:034896 AF225577 clone AS00-07 prokMSA_id:044596 AF225585 clone AS00-15 prokMSA_id:043712 AF225586 clone AS00-16 prokMSA_id:051774 AF225597 clone AS00-28 prokMSA_id:022915 AF225629 clone AS01-27 prokMSA_id:016938 AF225633 clone AS01-32 prokMSA_id:023533 AF225665 clone AS17-02 prokMSA_id:052317 AF225666 clone AS17-03 prokMSA_id:032787 AF225672 clone AS17-10 prokMSA_id:031178 AF225678 clone AS17-17 prokMSA_id:028505 AF225689 clone AS17-31 prokMSA_id:077450 AF524853 K-5a2 prokMSA_id:000445 AJ227920 clone ARR3. prokMSA_id:000483 AJ227935 clone ARR22. prokMSA_id:000414 AJ227952 clone ABS5. prokMSA_id:000488 AJ227958 clone ABS17. prokMSA_id:000458 AJ236453 clone ST1-2. prokMSA_id:000459 AJ236456 clone ST1-5. prokMSA_id:000461 AJ236470 clone ST1-19. prokMSA_id:000411 AJ236492 clone S15-11. prokMSA_id:000412 AJ236493 clone S15-12. prokMSA_id:030197 AJ244283 anaerobic methanogenic ET1-7 prokMSA_id:070318 AJ308907 euryarchaeote clone ARS1-c10 prokMSA_id:073356 AJ308909 euryarchaeote clone ARS1-c14 prokMSA_id:048134 AJ308912 euryarchaeote clone ARS1-c55 prokMSA_id:030288 AJ308917 euryarchaeote clone ARS1-c69 prokMSA_id:052075 AJ310451 RSS50-1 clone RSS50-1 prokMSA_id:034715 AJ310455 RSS50-5 clone RSS50-5 prokMSA_id:044499 AJ310456 RSS50-6 clone RSS50-6 prokMSA_id:030202 AJ310458 RSS50-8 clone RSS50-8 prokMSA_id:027587 AJ310459 RSS50-9 clone RSS50-9 prokMSA_id:031052 AJ310460 RSS50-10 clone RSS50-10 prokMSA_id:023733 AJ310461 RSS50-11 clone RSS50-11 1.1.3.2.1.009 OTU 1 seq prokMSA_id:000470 AJ236538 clone S30-29. 1.1.3.2.1.012 OTU 1 seq prokMSA_id:000443 AJ236508 clone S15-27. 1.1.3.2.1.013 OTU 1 seq prokMSA_id:000442 AF118658 clone pBRKC129. 1.1.3.2.1.014 OTU 4 seqs prokMSA_id:000441 AF118661 clone pBRKC84. prokMSA_id:000440 AF118668 clone pBRKC91. prokMSA_id:000434 AF118669 clone pBRKC134. prokMSA_id:048568 AF424531 euryarchaeote MERTZ_2CM_183 1.1.3.2.1.015 OTU 8 seqs prokMSA_id:000421 AF015977 clone 2C83. prokMSA_id:000437 AF015991 clone 2MT7. prokMSA_id:000438 AF134393 clone BA2H11fin. prokMSA_id:069934 AF354130 isolate SB-24a1B11 prokMSA_id:073952 AF354134 isolate SB-24a1F10 prokMSA_id:073445 AF354143 isolate SB-24a1A4 prokMSA_id:095517 AY211687 Methanosarcinales clone GoM GC185 517R prokMSA_id:093364 AY324379 clone BR34ARC_C05 1.1.3.2.1.026 OTU 1 seq prokMSA_id:000422 Z29439 symbiont of Plagiopyla frontata. 1.1.3.2.1.031 OTU 1 seq prokMSA_id:020092 AJ310457 RSS50-7 clone RSS50-7 1.1.3.2.1.033 OTU 3 seqs prokMSA_id:020184 AF293016 Green Bay ferromanganous micronodule ARB5 prokMSA_id:074581 AF293017 Green Bay ferromanganous micronodule ARC3 prokMSA_id:094322 AJ583383 clone S15A-MN71A 1.1.3.2.1.034 OTU 1 seq prokMSA_id:022543 AJ310453 RSS50-3 clone RSS50-3 1.1.3.2.1.035 OTU 1 seq prokMSA_id:024066 AJ308910 euryarchaeote clone ARS1-c52 1.1.3.2.1.036 OTU 1 seq prokMSA_id:059023 AJ299173 20b-28 clone 20b-28 1.1.3.2.1.037 OTU 2 seqs prokMSA_id:059019 AJ299176 20b-37 clone 20b-37 prokMSA_id:058997 AJ299200 20c-47 clone 20c-47 1.1.3.2.1.038 OTU 1 seq prokMSA_id:030042 AY063698 clone RS500-13 1.1.3.2.1.040 OTU 1 seq prokMSA_id:035246 AF199376 Euryarchaeote DJ3.25-13 1.1.3.2.1.043 OTU 5 seqs prokMSA_id:069820 AF354128 isolate Eel-36a2A4 prokMSA_id:072991 AF354135 isolate SB-24a1H2 prokMSA_id:073643 AF354138 isolate SB-24a1C12 prokMSA_id:036504 AF354140 isolate Eel-36a2B9 prokMSA_id:094047 AY323225 Methanosarcinales clone AMOS1B_4113_H12 1.1.3.2.1.045 OTU 15 seqs prokMSA_id:000428 AB019737 clone pMC2A203. prokMSA_id:000429 AB019738 clone pMC2A33. prokMSA_id:078998 AB094526 clone:OHKA1.30 prokMSA_id:093737 AB119574 euryarchaeote clone:ESYB18 prokMSA_id:093902 AB119575 euryarchaeote clone:ESYB19 prokMSA_id:093431 AB119577 euryarchaeote clone:ESYB21 prokMSA_id:093785 AB119578 euryarchaeote clone:ESYB22 prokMSA_id:042447 AF015981 2MT1 prokMSA_id:000427 AF142832 clone BURTON-12. prokMSA_id:073685 AF419643 C1_R046 prokMSA_id:059081 AJ294858 19b-16 clone 19b-16 prokMSA_id:059838 AY133347 clone OB3_83 prokMSA_id:059837 AY133351 clone OB3_115 prokMSA_id:076446 AY164324 Thermoplasmatales clone ULIA-2 prokMSA_id:093119 AY345178 clone 626-103 1.1.3.2.1.047 OTU 1 seq prokMSA_id:043303 AY063644 clone RS300-19 1.1.3.2.1.050 OTU 1 seq prokMSA_id:045908 AF199374 Euryarchaeote D4.75-4 1.1.3.2.1.052 OTU 49 seqs prokMSA_id:025643 AF225584 clone AS00-14 prokMSA_id:020729 AF225590 clone AS00-20 prokMSA_id:028866 AF225592 clone AS00-23 prokMSA_id:035375 AF225598 clone AS00-29 prokMSA_id:029975 AF225605 clone AS01-03 prokMSA_id:051814 AF225613 clone AS01-11 prokMSA_id:038645 AF225614 clone AS01-12 prokMSA_id:028105 AF225651 clone AS08-19 prokMSA_id:020265 AF225662 clone AS08-33 prokMSA_id:020076 AF225664 clone AS17-01 prokMSA_id:046872 AF225671 clone AS17-09 prokMSA_id:052494 AF225675 clone AS17-14 prokMSA_id:021550 AF225677 clone AS17-16 prokMSA_id:042603 AF225687 clone AS17-29 prokMSA_id:000446 AJ227921 clone ARR5. prokMSA_id:000447 AJ227923 clone ARR8. prokMSA_id:000448 AJ227924 clone ARR9. prokMSA_id:000478 AJ227926 clone ARR12. prokMSA_id:000479 AJ227927 clone ARR13. prokMSA_id:000480 AJ227928 clone ARR14. prokMSA_id:000481 AJ227930 clone ARR17. prokMSA_id:000482 AJ227933 clone ARR20. prokMSA_id:000413 AJ227937 clone ARR24. prokMSA_id:000485 AJ227942 clone ARR30. prokMSA_id:000486 AJ227943 clone ARR31. prokMSA_id:000487 AJ227950 clone ARR40. prokMSA_id:000415 AJ227953 clone ABS6. prokMSA_id:000457 AJ236452 clone ST1-1. prokMSA_id:000460 AJ236469 clone ST1-18. prokMSA_id:000462 AJ236476 clone ST1-25. prokMSA_id:000463 AJ236484 clone S15-3. prokMSA_id:000465 AJ236497 clone S15-16. prokMSA_id:000467 AJ236514 clone S30-2. prokMSA_id:000468 AJ236517 clone S30-9. prokMSA_id:000471 AJ236540 clone S30-30. prokMSA_id:024539 AJ244278 anaerobic methanogenic ET1-2 prokMSA_id:042431 AJ244279 anaerobic methanogenic ET1-3 prokMSA_id:024833 AJ244285 anaerobic methanogenic ET1-9 prokMSA_id:052492 AY063624 clone RST-29 prokMSA_id:035987 AY063628 clone RS300-3 prokMSA_id:038287 AY063629 clone RS300-4 prokMSA_id:047835 AY063661 clone RS0-6 prokMSA_id:046314 AY063663 clone RS0-8 prokMSA_id:000450 Y18074 clone H2-2. prokMSA_id:000451 Y18075 clone H2-4. prokMSA_id:000452 Y18076 clone H2-9. prokMSA_id:000453 Y18077 clone H2-10. prokMSA_id:000454 Y18078 clone H2-11. prokMSA_id:000455 Y18079 clone H2-12. 1.1.3.2.1.053 OTU 1 seq prokMSA_id:056748 AY166009 clone FZ2ba17 1.1.3.2.1.058 OTU 1 seq prokMSA_id:068322 AF356643 clone G72_C12 1.1.3.2.1.060 OTU 3 seqs prokMSA_id:068326 AF356639 clone G72_C1 prokMSA_id:068323 AF356642 clone G72_C6 prokMSA_id:068321 AF356645 clone G72_C61 1.1.3.2.1.061 OTU 1 seq prokMSA_id:078678 AB094539 clone:OHKA4.46 1.1.3.2.1.063 OTU 261 seqs prokMSA_id:000432 AB015279 unnamed organism. prokMSA_id:044364 AB050218 SAGMA-M prokMSA_id:042674 AB050220 SAGMA-O prokMSA_id:030939 AB065295 Methanosarcina mazei prokMSA_id:091846 AB065296 Methanosarcina mazei prokMSA_id:062892 AB077214 Methanosarcinales clone:KuA4 prokMSA_id:062890 AB077216 Methanomethylovorans sp. clone:KuA6 prokMSA_id:067139 AB084244 clone:LCE prokMSA_id:083129 AB092843 euryarchaeote clone:ALU01 prokMSA_id:085912 AB092844 euryarchaeote clone:ALU02 prokMSA_id:085536 AB092845 euryarchaeote clone:ALU03 prokMSA_id:082512 AB092846 euryarchaeote clone:ALU04 prokMSA_id:082682 AB092886 euryarchaeote clone:AHU01 prokMSA_id:083661 AB092887 euryarchaeote clone:AHU02 prokMSA_id:085431 AB092888 euryarchaeote clone:AHU03 prokMSA_id:083651 AB092889 euryarchaeote clone:AHU04 prokMSA_id:083073 AB092890 euryarchaeote clone:AHU05 prokMSA_id:083403 AB095121 clone:pCIRA-K prokMSA_id:098635 AB107806 clone:ST-3 prokMSA_id:067692 AE010754 Methanosarcina acetivorans str. C2A section 99 of 534 of the complete genome prokMSA_id:067694 AE010833 Methanosarcina acetivorans str. C2A section 178 of 534 of the complete genome prokMSA_id:067693 AE011184 Methanosarcina acetivorans str. C2A section 529 of 534 of the complete genome prokMSA_id:028460 AF015972 2C30 prokMSA_id:051952 AF015974 2C46 prokMSA_id:026874 AF015975 2C8 prokMSA_id:018815 AF015986 2MT198 prokMSA_id:039338 AF015987 2MT22 prokMSA_id:000476 AF020341 Methanosarcina FR str. FR. prokMSA_id:000374 AF028691 Methanosarcina mazei str. SarPi. prokMSA_id:000491 AF028692 Methanosarcina barkeri str. Sar. prokMSA_id:000364 AF081943 clone NS-TS235-C290. prokMSA_id:000431 AF120163 Methanomethylovorans hollandica str. DMS1. prokMSA_id:000379 AF132849 Methanosarcina mazei str. N2M9705. prokMSA_id:022452 AF142977 ACE2_A prokMSA_id:000430 AF142978 clone ACE3_A. prokMSA_id:045603 AF225574 clone AS00-02 prokMSA_id:040828 AF225575 clone AS00-03 prokMSA_id:043312 AF225576 clone AS00-06 prokMSA_id:038907 AF225578 clone AS00-08 prokMSA_id:024209 AF225579 clone AS00-09 prokMSA_id:025603 AF225580 clone AS00-10 prokMSA_id:070019 AF225583 clone AS00-13 prokMSA_id:047844 AF225588 clone AS00-18 prokMSA_id:070902 AF225589 clone AS00-19 prokMSA_id:028183 AF225591 clone AS00-22 prokMSA_id:026085 AF225595 clone AS00-26 prokMSA_id:030365 AF225596 clone AS00-27 prokMSA_id:037356 AF225599 clone AS00-30 prokMSA_id:040571 AF225600 clone AS00-32 prokMSA_id:051936 AF225607 clone AS01-05 prokMSA_id:073194 AF225609 clone AS01-07 prokMSA_id:017646 AF225619 clone AS01-17 prokMSA_id:036956 AF225624 clone AS01-22 prokMSA_id:030805 AF225631 clone AS01-29 prokMSA_id:037379 AF225634 clone AS08-01 prokMSA_id:017636 AF225636 clone AS08-04 prokMSA_id:026442 AF225638 clone AS08-06 prokMSA_id:041306 AF225639 clone AS08-07 prokMSA_id:036797 AF225644 clone AS08-12 prokMSA_id:051741 AF225647 clone AS08-15 prokMSA_id:031315 AF225648 clone AS08-16 prokMSA_id:039240 AF225650 clone AS08-18 prokMSA_id:070777 AF225652 clone AS08-21 prokMSA_id:047400 AF225653 clone AS08-23 prokMSA_id:040034 AF225654 clone AS08-24 prokMSA_id:043888 AF225657 clone AS08-28 prokMSA_id:049826 AF225659 clone AS08-30 prokMSA_id:016806 AF225660 clone AS08-31 prokMSA_id:047179 AF225663 clone AS08-34 prokMSA_id:047706 AF225668 clone AS17-05 prokMSA_id:041302 AF225669 clone AS17-06 prokMSA_id:021184 AF225682 clone AS17-22 prokMSA_id:038146 AF225683 clone AS17-23 prokMSA_id:032996 AF225684 clone AS17-25 prokMSA_id:074698 AF225692 clone AS17-34 prokMSA_id:024965 AF276441 clone RFLP 1A prokMSA_id:031204 AF276444 clone RFLP 214A prokMSA_id:026729 AF276445 clone RFLP 308A prokMSA_id:025491 AF293014 Green Bay ferromanganous micronodule ARF3 prokMSA_id:041626 AF293015 Green Bay ferromanganous micronodule ARG4 prokMSA_id:040857 AF354132 isolate SB-24a1C2 prokMSA_id:070903 AF354136 isolate Eel-36a2H11 prokMSA_id:041237 AF395424 Arc No. 7 prokMSA_id:018470 AF411467 Methanosarcina mazei strain O1M9704b prokMSA_id:035515 AF411468 Methanosarcina mazei strain O1M9702 prokMSA_id:018827 AF411469 Methanosarcina mazei strain O1M9701 prokMSA_id:032454 AF418927 clone HTA-B3 prokMSA_id:019730 AF418929 clone HTA-C1 prokMSA_id:040739 AF418932 clone HTA-D2 prokMSA_id:019991 AF418936 clone HTA-F1 prokMSA_id:030246 AF447155 clone TDC-AR5 prokMSA_id:088792 AF519802 Methanosarcina sp. JL01 prokMSA_id:000514 AJ002476 Methanosarcina barkeri str. CM1. prokMSA_id:000490 AJ012094 Methanosarcina barkeri str. MS DSM 800 . prokMSA_id:000373 AJ012095 Methanosarcina mazei str. C16 DSM 2053 . prokMSA_id:000403 AJ012742 Methanosarcina semesii str. MD1. prokMSA_id:000492 AJ227922 clone ARR6. prokMSA_id:000517 AJ227936 clone ARR23. prokMSA_id:000484 AJ227940 clone ARR28. prokMSA_id:000401 AJ227944 clone ARR32. prokMSA_id:000402 AJ227945 clone ARR34. prokMSA_id:000381 AJ236464 clone ST1-13. prokMSA_id:000382 AJ236480 clone ST1-29. prokMSA_id:000383 AJ236488 clone S15-7. prokMSA_id:000384 AJ236494 clone S15-13. prokMSA_id:000464 AJ236496 clone S15-15. prokMSA_id:000466 AJ236498 clone S15-17. prokMSA_id:000385 AJ236499 clone S15-18. prokMSA_id:000386 AJ236500 clone S15-19. prokMSA_id:000387 AJ236502 clone S15-21. prokMSA_id:000388 AJ236503 clone S15-22. prokMSA_id:000389 AJ236504 clone S15-23. prokMSA_id:000390 AJ236510 clone S15-29. prokMSA_id:000499 AJ236512 clone S30-11. prokMSA_id:000500 AJ236513 clone S30-8. prokMSA_id:000501 AJ236516 clone S30-3. prokMSA_id:000502 AJ236518 clone S30-5. prokMSA_id:000469 AJ236520 clone S30-10. prokMSA_id:000503 AJ236521 clone S30-6. prokMSA_id:000391 AJ236522 clone S30-21. prokMSA_id:000504 AJ236523 clone S30-28. prokMSA_id:000505 AJ236524 clone S30-26. prokMSA_id:000392 AJ236525 clone S30-27. prokMSA_id:000393 AJ236526 clone S30-23. prokMSA_id:000506 AJ236527 clone S30-25. prokMSA_id:000507 AJ236528 clone S30-19. prokMSA_id:000508 AJ236529 clone S30-24. prokMSA_id:000394 AJ236531 clone S30-4. prokMSA_id:000509 AJ236532 clone S30-20. prokMSA_id:000510 AJ236533 clone S30-18. prokMSA_id:000395 AJ236534 clone S30-14. prokMSA_id:000511 AJ236535 clone S30-12. prokMSA_id:000396 AJ236536 clone S30-15. prokMSA_id:000512 AJ236537 clone S30-13. prokMSA_id:000397 AJ236539 clone S30-17. prokMSA_id:000513 AJ236541 clone S30-16. prokMSA_id:000475 AJ238648 str. GS1-A. prokMSA_id:052649 AJ244282 anaerobic methanogenic ET1-6 prokMSA_id:041314 AJ244297 anaerobic methanogenic E30-1 prokMSA_id:025335 AJ244299 anaerobic methanogenic E30-3 prokMSA_id:047997 AJ244300 anaerobic methanogenic E30-4 prokMSA_id:023484 AJ244302 anaerobic methanogenic E30-6 prokMSA_id:047369 AJ244303 anaerobic methanogenic E30-7 prokMSA_id:044590 AJ244304 anaerobic methanogenic E30-8 prokMSA_id:046380 AJ244305 anaerobic methanogenic E30-9 prokMSA_id:045917 AJ244306 anaerobic methanogenic E30-10 prokMSA_id:048567 AJ276437 Methanomethylovorans victoriae strain TM prokMSA_id:048490 AJ288316 clone AC72 prokMSA_id:027554 AJ290554 Cas14#1 prokMSA_id:032168 AJ290555 Cas14#2 prokMSA_id:035859 AJ290556 Cas14#3 prokMSA_id:022373 AJ290557 Cas14#4 prokMSA_id:038104 AJ290558 Cas14#5 prokMSA_id:039246 AJ290559 Cas14#6 prokMSA_id:026141 AJ290560 Cas18#1 prokMSA_id:051160 AJ290565 Cas19#2 prokMSA_id:040975 AJ290566 Cas19#3 prokMSA_id:046164 AJ290569 Cas19#6 prokMSA_id:048701 AJ290573 Cas20#4 prokMSA_id:020746 AJ308911 euryarchaeote clone ARS1-c53 prokMSA_id:033259 AJ308914 euryarchaeote clone ARS1-c59 prokMSA_id:029988 AJ308916 euryarchaeote clone ARS1-c64 prokMSA_id:021165 AJ308918 euryarchaeote clone ARS1-c76 prokMSA_id:037757 AJ308919 euryarchaeote clone ARS1-c77 prokMSA_id:036909 AJ308920 euryarchaeote clone ARS2-c2 prokMSA_id:024717 AJ308921 euryarchaeote clone ARS2-c13 prokMSA_id:019812 AJ308922 euryarchaeote clone ARS2-c18 prokMSA_id:048530 AJ308933 euryarchaeote clone ARS2-c77 prokMSA_id:043054 AJ308938 euryarchaeote clone ARS3-c13 prokMSA_id:030069 AJ308940 euryarchaeote clone ARS3-c37 prokMSA_id:073932 AJ308943 euryarchaeote clone ARS3-50 prokMSA_id:019965 AJ308955 euryarchaeote clone ARS7-c3 prokMSA_id:050871 AJ308956 euryarchaeote clone ARS7-c4 prokMSA_id:066897 AJ312013 clone SHB-143 prokMSA_id:058527 AJ493114 clone LK12 prokMSA_id:082041 AJ548943 methanogenic clone FenE- prokMSA_id:081762 AJ548944 methanogenic clone FenE1- prokMSA_id:082284 AJ548945 methanogenic clone FenE2- prokMSA_id:041916 AY062224 clone GW70-10-1 prokMSA_id:041832 AY062232 clone GW70-20-11 prokMSA_id:048394 AY063603 clone RST-8 prokMSA_id:026999 AY063609 clone RST-14 prokMSA_id:036277 AY063613 clone RST-18 prokMSA_id:040216 AY063625 clone RST-30 prokMSA_id:034311 AY063631 clone RS300-6 prokMSA_id:024991 AY063632 clone RS300-7 prokMSA_id:050640 AY063634 clone RS300-9 prokMSA_id:040573 AY063635 clone RS300-10 prokMSA_id:041101 AY063636 clone RS300-11 prokMSA_id:044494 AY063639 clone RS300-14 prokMSA_id:040561 AY063640 clone RS300-15 prokMSA_id:028944 AY063642 clone RS300-17 prokMSA_id:026692 AY063643 clone RS300-18 prokMSA_id:033292 AY063645 clone RS300-20 prokMSA_id:021211 AY063646 clone RS300-21 prokMSA_id:034217 AY063648 clone RS300-23 prokMSA_id:042203 AY063649 clone RS300-24 prokMSA_id:024132 AY063650 clone RS300-25 prokMSA_id:050629 AY063662 clone RS0-7 prokMSA_id:041398 AY063669 clone RS0-14 prokMSA_id:037879 AY063671 clone RS0-16 prokMSA_id:033460 AY063674 clone RS0-19 prokMSA_id:052381 AY063681 clone RS0-26 prokMSA_id:025308 AY063684 clone RS0-29 prokMSA_id:039756 AY063686 clone RS500-1 prokMSA_id:031854 AY063694 clone RS500-9 prokMSA_id:030906 AY063696 clone RS500-11 prokMSA_id:052926 AY063697 clone RS500-12 prokMSA_id:043269 AY063704 clone RS500-19 prokMSA_id:036123 AY063705 clone RS500-20 prokMSA_id:080511 AY161249 clone SSADM_AB4 prokMSA_id:079694 AY161251 clone SSADM_AC4 prokMSA_id:080134 AY161255 clone SSADM_AD3 prokMSA_id:079968 AY161259 clone SSADM_AF9 prokMSA_id:076258 AY164281 Methanohalophilus sp. clone ALIA-123 prokMSA_id:075203 AY164315 Methanohalophilus sp. clone DLIA-189 prokMSA_id:075577 AY164331 Methanohalophilus sp. clone ULIA-84 prokMSA_id:078844 AY175383 clone LH-04 prokMSA_id:078451 AY175395 clone MB-07 prokMSA_id:078426 AY175397 clone MB-09 prokMSA_id:078632 AY175401 clone MB-13 prokMSA_id:079007 AY177810 Methanococcoides sp. clone SB01 prokMSA_id:079072 AY177811 Methanolobus sp. clone SB03 prokMSA_id:078825 AY177812 Methanolobus sp. clone SB05 prokMSA_id:078647 AY177814 Methanococcoides sp. clone SB14 prokMSA_id:097239 AY196682 Methanosarcina barkeri prokMSA_id:098756 AY196685 Methanosarcina mazei prokMSA_id:090165 AY225109 clone M1.3 prokMSA_id:083347 AY226349 Methanohalophilus sp. clone ABBA-51 prokMSA_id:083181 AY231357 clone AR1_7 prokMSA_id:083549 AY256634 clone A1-106 prokMSA_id:082982 AY256635 clone A1-109 prokMSA_id:083059 AY256636 clone A2-119 prokMSA_id:082937 AY256637 clone A2-113 prokMSA_id:083519 AY256644 clone A1-102 prokMSA_id:085506 AY260430 Methanosarcina sp. MM prokMSA_id:083898 AY260431 Methanosarcina sp. MS prokMSA_id:084434 AY260432 Methanosarcina sp. MT prokMSA_id:083794 AY260433 Methanomethylovorans sp. ZB prokMSA_id:085096 AY280647 clone G2-9 prokMSA_id:087622 AY290717 Methanohalophilus portucalensis prokMSA_id:094025 AY323224 Methanosarcinales clone AMOS4A_4113_H07 prokMSA_id:092530 AY341326 ZAR122 prokMSA_id:093328 AY368464 clone CM62 prokMSA_id:094176 AY368465 clone CM80 prokMSA_id:055681 NC_003552 Methanosarcina acetivorans str. C2A complete genome prokMSA_id:000380 U81776 clone vadinDA05. prokMSA_id:000498 U81777 clone vadinCA25. prokMSA_id:000472 U89773 Methanosarcina siciliae str. C2J. prokMSA_id:000426 X65537 Methanococcoides burtonii DSM 6242 . prokMSA_id:000439 X69874 Methanosarcina mazei str. Go1. prokMSA_id:000361 X98192 Methanococcoides euhalobius. prokMSA_id:000400 Y15387 clone ABS4. prokMSA_id:000477 Y15394 clone ABS19. prokMSA_id:000515 Y15400 Methanosarcina sp. str. VeA23. prokMSA_id:044725 Y16946 Methanococcoides sp. strain NaT1 prokMSA_id:000375 Y18067 clone EtOH3. prokMSA_id:000376 Y18068 clone EtOH5. prokMSA_id:000377 Y18070 clone EtOH7. prokMSA_id:000378 Y18071 clone EtOH8. prokMSA_id:000449 Y18072 clone EtOH9. 1.1.3.2.1.064 OTU 2 seqs prokMSA_id:090526 AY299515 clone LC1149a-56 prokMSA_id:088818 AY299516 clone LC1022a-1 1.1.3.2.1.067 OTU 1 seq prokMSA_id:093567 AY360486 clone BSA7-305m 1.1.3.2.1.070 OTU 38 seqs prokMSA_id:070991 AF354129 isolate Eel-36a2A1 prokMSA_id:074281 AF354133 isolate Eel-36a2A5 prokMSA_id:072945 AF354139 isolate Eel-36a2E1 prokMSA_id:072394 AF354141 isolate SB-17a1B11 prokMSA_id:041219 AF354142 isolate SB-17a1D3 prokMSA_id:073069 AF419635 C1_R004 prokMSA_id:074364 AF419638 C1_R019 prokMSA_id:035354 AF419644 C1_R048 prokMSA_id:069806 AF419647 CS_R012 prokMSA_id:059083 AJ294855 19b-7 clone 19b-7 prokMSA_id:059079 AJ294860 19b-23 clone 19b-23 prokMSA_id:059077 AJ294861 19b-24 clone 19b-24 prokMSA_id:059070 AJ294868 19b-38 clone 19b-38 prokMSA_id:059068 AJ294872 19b-46 clone 19b-46 prokMSA_id:059048 AJ294892 19c-36 clone 19c-36 prokMSA_id:059046 AJ294893 19c-45 clone 19c-45 prokMSA_id:059047 AJ294894 19c-49 clone 19c-49 prokMSA_id:059039 AJ294899 19b-31 clone 19b-31 prokMSA_id:020168 AY053472 At425_ArD2 prokMSA_id:021515 AY053474 AT425_ArE12 prokMSA_id:098490 AY211685 Methanosarcinales clone GoM GC185 503R prokMSA_id:098255 AY211686 Methanosarcinales clone GoM GC185 505R prokMSA_id:098159 AY211692 Methanosarcinales clone GoM GC234 009R prokMSA_id:098308 AY211694 Methanosarcinales clone GoM GC234 019R prokMSA_id:095246 AY211695 Methanosarcinales clone GoM GC234 021R prokMSA_id:095425 AY211701 Methanosarcinales clone GoM GC234 520R prokMSA_id:097124 AY211704 Methanosarcinales clone GoM GC234 607R prokMSA_id:095930 AY211710 Methanosarcinales clone GoM GC234 622R prokMSA_id:097712 AY211713 Methanosarcinales clone GoM GC234 634R prokMSA_id:093178 AY323218 Methanosarcinales clone AMOS4A_4113_B05 prokMSA_id:094007 AY323221 Methanosarcinales clone AMOS1B_4113_F12 prokMSA_id:093444 AY323222 Methanosarcinales clone AMOS1A_4113_G08 prokMSA_id:094105 AY323223 Methanosarcinales clone AMOS4A_4113_H05 prokMSA_id:093207 AY324376 clone GZfosARC_26E7 prokMSA_id:093864 AY324380 clone F17.1ARC_A02 prokMSA_id:092491 AY345177 clone 626-102 prokMSA_id:092926 AY345181 clone 626-27 prokMSA_id:092823 AY345183 clone 626-29 1.1.3.2.1.072 OTU 7 seqs prokMSA_id:098647 AY211703 Methanosarcinales clone GoM GC234 606R prokMSA_id:097356 AY211716 Methanosarcinales clone GoM GC185 618A prokMSA_id:095255 AY211717 Methanosarcinales clone GoM GC185 620A prokMSA_id:097198 AY211718 Methanosarcinales clone GoM GC185 623A prokMSA_id:096736 AY211720 Methanosarcinales clone GoM GC185 626A prokMSA_id:097299 AY211726 Methanosarcinales clone GoM GC234 046A prokMSA_id:096896 AY211729 Methanosarcinales clone GoM GC234 677A 1.1.3.2.1.999 poor quality 215 seqs prokMSA_id:039346 AB046180 GA10 prokMSA_id:036684 AB055983 WSB-1 prokMSA_id:047604 AB055986 WSB-4 prokMSA_id:044908 AB055992 WSB-10 prokMSA_id:017845 AB055996 WSB-14 prokMSA_id:025487 AB056006 AM-3 prokMSA_id:021219 AB056010 AM-7 prokMSA_id:035919 AB056011 AM-8 prokMSA_id:020131 AB056019 AM-16 prokMSA_id:040506 AB056021 AM-18 prokMSA_id:032840 AB056023 AM-20 prokMSA_id:025752 AB056026 OS-1 prokMSA_id:023877 AB056028 OS-3 prokMSA_id:053514 AB056030 OS-5 prokMSA_id:026189 AB056032 OS-7 prokMSA_id:017367 AB056042 OS-17 prokMSA_id:075297 AB062323 methanogenic symbiont PA119 prokMSA_id:075614 AB062325 methanogenic symbiont PA112 prokMSA_id:076560 AB062326 methanogenic symbiont PA104 prokMSA_id:076889 AB062327 methanogenic symbiont ST144 prokMSA_id:077070 AB062328 methanogenic symbiont ST107 prokMSA_id:076165 AB062329 methanogenic symbiont ST162 prokMSA_id:077006 AB062330 methanogenic symbiont ST158 prokMSA_id:077208 AB062331 methanogenic symbiont ST153 prokMSA_id:076729 AB062332 methanogenic symbiont ST165 prokMSA_id:076332 AB062333 methanogenic symbiont ST140 prokMSA_id:075826 AB062334 methanogenic symbiont PJ101 prokMSA_id:076439 AB062335 methanogenic symbiont PJ109 prokMSA_id:076758 AB062336 methanogenic symbiont ST159 prokMSA_id:076896 AB062337 methanogenic symbiont ST109 prokMSA_id:075141 AB062338 methanogenic symbiont PA103 prokMSA_id:076225 AB062339 methanogenic symbiont PA102 prokMSA_id:076141 AB062340 methanogenic symbiont PA114 prokMSA_id:076353 AB062341 methanogenic symbiont ST154 prokMSA_id:076383 AB062342 methanogenic symbiont ST103 prokMSA_id:076902 AB062343 methanogenic symbiont ST105 prokMSA_id:076236 AB062344 methanogenic symbiont ST126 prokMSA_id:077063 AB062345 methanogenic symbiont ST111 prokMSA_id:077059 AB062346 methanogenic symbiont ST117 prokMSA_id:075591 AB062347 methanogenic symbiont PA101 prokMSA_id:076303 AB062348 methanogenic symbiont ST113 prokMSA_id:075315 AB062349 methanogenic symbiont PA124 prokMSA_id:076067 AB062350 methanogenic symbiont PJ118 prokMSA_id:076580 AB062351 methanogenic symbiont ST168 prokMSA_id:077253 AB062352 methanogenic symbiont ST167 prokMSA_id:075820 AB062353 methanogenic symbiont ST143 prokMSA_id:075839 AB062354 methanogenic symbiont ST129 prokMSA_id:076911 AB062355 methanogenic symbiont PJ102 prokMSA_id:075666 AB062356 methanogenic symbiont PA105 prokMSA_id:075325 AB062357 methanogenic symbiont ST102 prokMSA_id:093414 AB119557 euryarchaeote clone:ESYB1 prokMSA_id:000419 AF015965 clone 1MT325. prokMSA_id:000420 AF015966 clone 2C100. prokMSA_id:000365 AF048767 unnamed organism. prokMSA_id:000366 AF048768 unnamed organism. prokMSA_id:000367 AF048769 unnamed organism. prokMSA_id:000368 AF048770 unnamed organism. prokMSA_id:000369 AF048771 unnamed organism. prokMSA_id:000370 AF048772 unnamed organism. prokMSA_id:000363 AF081942 clone NS-TS10-284. prokMSA_id:000444 AF134384 clone TA1a4. prokMSA_id:000398 AF146266 Methanogenium SCALE-14. prokMSA_id:000489 AF149891 str. A8.96.42. prokMSA_id:000399 AF153808 Methanosarcina mazei str. O1M9704. prokMSA_id:028672 AF218430 euryarchaeote clone A2M8 prokMSA_id:016896 AF262036 Methanosarcina mazei prokMSA_id:042903 AF293510 euryarchaeote clone P1-Ar-12 prokMSA_id:045534 AF293511 euryarchaeote clone P1-Ar-13 prokMSA_id:035561 AF293512 euryarchaeote clone P1-Ar-14 prokMSA_id:018310 AF293513 euryarchaeote clone P1-Ar-15 prokMSA_id:035091 AF293527 euryarchaeote clone P1-Ar-19 prokMSA_id:035771 AF293528 euryarchaeote clone P1-Ar-20 prokMSA_id:032342 AF293529 euryarchaeote clone P1-Ar-21 prokMSA_id:054791 AF293530 euryarchaeote clone P1-Ar-22 prokMSA_id:033559 AF293531 euryarchaeote clone P1-Ar-23 prokMSA_id:040656 AF293532 euryarchaeote clone P1-Ar-25 prokMSA_id:018593 AF293533 euryarchaeote clone P1-Ar-26 prokMSA_id:048239 AF293534 euryarchaeote clone P1-Ar-27 prokMSA_id:033973 AF293535 euryarchaeote clone P1-Ar-28 prokMSA_id:027708 AF293536 euryarchaeote clone P1-Ar-29 prokMSA_id:051355 AF293537 euryarchaeote clone P1-Ar-30 prokMSA_id:072875 AF314248 clone ANME 17 prokMSA_id:071029 AF314250 clone ANME 23 prokMSA_id:052344 AF339848 clone AA prokMSA_id:048032 AF339849 clone AB prokMSA_id:073481 AF364949 clone clL1arc prokMSA_id:073689 AF374283 euryarchaeote EHB95 prokMSA_id:070321 AF374284 euryarchaeote EHB216 prokMSA_id:074205 AF374285 euryarchaeote EHB97 prokMSA_id:069936 AF419650 AT_R007 prokMSA_id:052710 AF432127 Methanosarcina lacustera prokMSA_id:029021 AF448451 IUA162 prokMSA_id:033589 AF473904 euryarchaeote t42_21H prokMSA_id:043061 AF473905 euryarchaeote t42_19E prokMSA_id:066227 AF509441 Methanobrevibacter smithii clone 17f prokMSA_id:056357 AF515508 euryarchaeote clone PPArcW23 prokMSA_id:059408 AF540862 clone DP10u12 prokMSA_id:000410 AJ236479 clone ST1-28. prokMSA_id:039059 AJ239989 euryarchaeote strain DGGE band CIARC-2 prokMSA_id:037611 AJ290564 Cas19#1 prokMSA_id:019429 AJ290567 Cas19#4 prokMSA_id:045255 AJ290568 Cas19#5 prokMSA_id:041216 AJ290570 Cas20#1 prokMSA_id:016672 AJ290571 Cas20#2 prokMSA_id:051884 AJ290572 Cas20#3 prokMSA_id:069250 AJ290574 Cas20#5 prokMSA_id:042797 AJ305065 63-A4 clone 63-A4 prokMSA_id:017428 AJ305070 63-A9 clone 63-A9 prokMSA_id:027247 AJ305072 63-A11 clone 63-A11 prokMSA_id:032196 AJ305078 63-A18 clone 63-A18 prokMSA_id:028912 AJ305080 63-A20 clone 63-A20 prokMSA_id:029795 AJ305081 63-A21 clone 63-A21 prokMSA_id:027059 AJ305082 63-A22 clone 63-A22 prokMSA_id:066892 AJ312016 clone SHC-10 prokMSA_id:078205 AJ459901 Methanosarcinaceae clone AED 1 DGGE MS821 32 prokMSA_id:058523 AJ493115 clone LK68 prokMSA_id:058521 AJ493116 clone LK1 prokMSA_id:058520 AJ493117 clone LK42 prokMSA_id:073520 AY032985 ASDS4 prokMSA_id:050007 AY032986 ASDS6 prokMSA_id:045367 AY032987 ASDS7 prokMSA_id:029089 AY032995 ASDS17 prokMSA_id:039017 AY032996 ASDS18 prokMSA_id:072004 AY055765 clone Gain8 prokMSA_id:040915 AY055767 clone Gain13 prokMSA_id:054129 AY063596 clone RST-1 prokMSA_id:017183 AY063597 clone RST-2 prokMSA_id:050260 AY063598 clone RST-3 prokMSA_id:030106 AY063599 clone RST-4 prokMSA_id:048408 AY063600 clone RST-5 prokMSA_id:022989 AY063601 clone RST-6 prokMSA_id:018734 AY063605 clone RST-10 prokMSA_id:037082 AY063614 clone RST-19 prokMSA_id:052219 AY063616 clone RST-21 prokMSA_id:030339 AY063617 clone RST-22 prokMSA_id:028166 AY063619 clone RST-24 prokMSA_id:020137 AY063621 clone RST-26 prokMSA_id:043945 AY063623 clone RST-28 prokMSA_id:023800 AY063630 clone RS300-5 prokMSA_id:019784 AY063638 clone RS300-13 prokMSA_id:034555 AY063641 clone RS300-16 prokMSA_id:020638 AY063651 clone RS300-26 prokMSA_id:040873 AY063653 clone RS300-28 prokMSA_id:032891 AY063654 clone RS300-29 prokMSA_id:016777 AY063655 clone RS300-30 prokMSA_id:039666 AY063657 clone RS0-2 prokMSA_id:036634 AY063673 clone RS0-18 prokMSA_id:030969 AY063675 clone RS0-20 prokMSA_id:042995 AY063676 clone RS0-21 prokMSA_id:024769 AY063683 clone RS0-28 prokMSA_id:048613 AY063685 clone RS0-30 prokMSA_id:030657 AY063692 clone RS500-7 prokMSA_id:027967 AY063707 clone RS500-22 prokMSA_id:052105 AY063708 clone RS500-23 prokMSA_id:029008 AY063709 clone RS500-24 prokMSA_id:047787 AY063710 clone RS500-25 prokMSA_id:035568 AY063711 clone RS500-26 prokMSA_id:052707 AY063712 clone RS500-27 prokMSA_id:022446 AY063713 clone RS500-28 prokMSA_id:083762 AY092088 clone AM13 prokMSA_id:084907 AY092089 clone AM57 prokMSA_id:085599 AY092090 clone AM4 prokMSA_id:084508 AY092091 clone AM25 prokMSA_id:086455 AY092092 clone AM44 prokMSA_id:083964 AY092093 clone AM39 prokMSA_id:084916 AY092094 clone AM24 prokMSA_id:085219 AY092095 clone AM5 prokMSA_id:084024 AY092096 clone AM14 prokMSA_id:084982 AY092097 clone AM35 prokMSA_id:082553 AY092098 clone AM3 prokMSA_id:082566 AY092099 clone AM46 prokMSA_id:083859 AY092148 clone AM80 prokMSA_id:086493 AY092149 clone AF91 prokMSA_id:084333 AY092150 clone AF90 prokMSA_id:083341 AY092151 clone AM42 prokMSA_id:085362 AY092152 clone AM87 prokMSA_id:086443 AY092153 clone AF40 prokMSA_id:060803 AY118148 Methanosarcinales clone OR-M8 prokMSA_id:080481 AY161250 clone SSADM_AC3 prokMSA_id:056771 AY165978 clone FZ2bA103 prokMSA_id:084520 AY231356 clone AR1_6 prokMSA_id:085324 AY256641 clone A1-104 prokMSA_id:085280 AY256643 clone A1-111 prokMSA_id:086743 AY261428 euryarchaeote clone RFLP A16 prokMSA_id:086861 AY261429 euryarchaeote clone RFLP A23 prokMSA_id:098325 AY291562 DGGE gel band 27 prokMSA_id:095330 AY291563 DGGE gel band 28 prokMSA_id:093310 AY324381 Methanosarcinaceae clone F17.1ARC_C05 prokMSA_id:092821 AY341325 ZAR63 prokMSA_id:097630 AY422337 Methanogenic F1/B-3 prokMSA_id:095965 AY422338 Methanogenic F1/P-3 prokMSA_id:095778 AY422339 Methanogenic F4/B-3 prokMSA_id:096313 AY422340 Methanogenic F4/P-3 prokMSA_id:095908 AY422341 Methanogenic U3/P-1 prokMSA_id:097325 AY422342 Methanogenic U3/B-1 prokMSA_id:000362 M59127 Methanococcoides methylutens str. TMA-10 DSM 2657 . prokMSA_id:000404 M59132 Methanohalophilus portucalensis prokMSA_id:000360 M59133 Methanohalophilus mahii prokMSA_id:000423 M59135 Methanolobus tindarius prokMSA_id:000406 M59136 Methanosarcina sp. prokMSA_id:000407 M59137 Methanosarcina acetivorans prokMSA_id:000372 M59138 Methanosarcina mazei prokMSA_id:000424 M59140 Methanosarcina thermophila prokMSA_id:000416 M59144 Methanosarcina barkeri str. 227 DSM 1538. prokMSA_id:000371 NONE Methanohalophilus zhilinae str. WeN5 DSM 4017 . prokMSA_id:000435 U20148 Methanolobus bombayensis str. B-1 OCM 438 . prokMSA_id:000425 U20149 Methanohalobium evestigatum str. Z-7303 DSM 3721 . prokMSA_id:000359 U20150 Methanosarcina vacuolata str. Z-761. prokMSA_id:000405 U20151 Methanosarcina mazei str. S-6. prokMSA_id:000436 U20152 Methanolobus oregonensis str. WAL1 DSM 5435 . prokMSA_id:000417 U20153 Methanosarcina siciliae str. TA/M DSM 3028 . prokMSA_id:000418 U20154 Methanolobus taylorii str. GS-16. prokMSA_id:000433 U20155 Methanolobus vulcani str. PL-12/M DSM 3029 . prokMSA_id:000408 U87515 clone LMA134. prokMSA_id:000409 U87516 clone LMA126. 1.1.3.2.2 METHANOSAETA 331 seqs 1.1.3.2.2.004 OTU 2 seqs prokMSA_id:000578 AF126858 clone SYA-112. prokMSA_id:000574 AF126865 clone SYA-141. 1.1.3.2.2.005 OTU 5 seqs prokMSA_id:041805 AF225582 clone AS00-12 prokMSA_id:000537 AJ227919 clone ARR2. prokMSA_id:000573 AJ227931 clone ARR18. prokMSA_id:037876 Y18066 archeobacteria Clone EtOH2 prokMSA_id:000546 Y18069 clone EtOH6. 1.1.3.2.2.010 OTU 1 seq prokMSA_id:000560 AJ236501 clone S15-20. 1.1.3.2.2.011 OTU 2 seqs prokMSA_id:000559 AJ236491 clone S15-10. prokMSA_id:016866 AJ244292 anaerobic methanogenic E15-6 1.1.3.2.2.012 OTU 2 seqs prokMSA_id:000556 AJ236486 clone S15-5. prokMSA_id:050126 AY063690 clone RS500-5 1.1.3.2.2.013 OTU 1 seq prokMSA_id:000554 AJ131277 clone VAL33-1. 1.1.3.2.2.014 OTU 1 seq prokMSA_id:000549 Y18086 clone Rot10. 1.1.3.2.2.017 OTU 15 seqs prokMSA_id:000533 AF050620 clone WCHD3-34. prokMSA_id:074828 AF225603 clone AS00-35 prokMSA_id:043391 AF225658 clone AS08-29 prokMSA_id:048279 AJ244280 anaerobic methanogenic ET1-4 prokMSA_id:041595 AJ308972 euryarchaeote clone AS04-16 prokMSA_id:020925 AJ310452 RSS50-2 clone RSS50-2 prokMSA_id:028877 AY062226 clone GW70-10-14 prokMSA_id:046137 AY063615 clone RST-20 prokMSA_id:050115 AY063626 clone RS300-1 prokMSA_id:039847 AY063647 clone RS300-22 prokMSA_id:038761 AY063652 clone RS300-27 prokMSA_id:026083 AY063677 clone RS0-22 prokMSA_id:036781 AY063687 clone RS500-2 prokMSA_id:026428 AY063695 clone RS500-10 prokMSA_id:031866 AY063702 clone RS500-17 1.1.3.2.2.019 OTU 2 seqs prokMSA_id:093182 AB119576 euryarchaeote clone:ESYB20 prokMSA_id:000526 AF119123 unnamed organism. 1.1.3.2.2.025 OTU 1 seq prokMSA_id:020919 AF225667 clone AS17-04 1.1.3.2.2.029 OTU 1 seq prokMSA_id:024868 AY063633 clone RS300-8 1.1.3.2.2.030 OTU 2 seqs prokMSA_id:025991 AF402986 clone archaeap3 prokMSA_id:049392 AF402987 crenarchaeote clone archaeap11 1.1.3.2.2.032 OTU 1 seq prokMSA_id:038768 AF225686 clone AS17-28 1.1.3.2.2.033 OTU 1 seq prokMSA_id:044079 AY063672 clone RS0-17 1.1.3.2.2.034 OTU 1 seq prokMSA_id:046663 AF424530 euryarchaeote MERTZ_2CM_151 1.1.3.2.2.036 OTU 155 seqs prokMSA_id:037564 AB050217 SAGMA-L prokMSA_id:044882 AB050219 SAGMA-N prokMSA_id:024169 AB050236 SAGMA-6 prokMSA_id:072392 AB071701 Methanothrix thermophila prokMSA_id:062894 AB077211 Methanosaeta sp. clone:KuA1 prokMSA_id:062893 AB077213 Methanosarcinales clone:KuA3 prokMSA_id:067140 AB084242 clone:LCC prokMSA_id:086307 AB092847 euryarchaeote clone:ALU05 prokMSA_id:086029 AB092848 euryarchaeote clone:ALU06 prokMSA_id:086643 AB092849 euryarchaeote clone:ALU07 prokMSA_id:084866 AB092850 euryarchaeote clone:ALU08 prokMSA_id:086037 AB092851 euryarchaeote clone:ALU09 prokMSA_id:083788 AB092891 euryarchaeote clone:AHU06 prokMSA_id:085827 AB092892 euryarchaeote clone:AHU07 prokMSA_id:000529 AF015973 clone 2C300X. prokMSA_id:000531 AF015990 clone 2MT53. prokMSA_id:017194 AF015993 2MT98 prokMSA_id:000532 AF050611 Methanosaeta WCHD3-03. prokMSA_id:000534 AF056363 unnamed organism. prokMSA_id:000535 AF056364 unnamed organism. prokMSA_id:000587 AF126837 clone SYA-7. prokMSA_id:000586 AF126838 clone SYA-8. prokMSA_id:000585 AF126839 clone SYA-12. prokMSA_id:000584 AF126841 clone SYA-20. prokMSA_id:000583 AF126842 clone SYA-26. prokMSA_id:000582 AF126843 clone SYA-30. prokMSA_id:000581 AF126848 clone SYA-62. prokMSA_id:000580 AF126850 clone SYA-74. prokMSA_id:000579 AF126856 clone SYA-94. prokMSA_id:000577 AF126859 clone SYA-122. prokMSA_id:000576 AF126862 clone SYA-130. prokMSA_id:040735 AF225587 clone AS00-17 prokMSA_id:044062 AF225606 clone AS01-04 prokMSA_id:034605 AF225611 clone AS01-09 prokMSA_id:046315 AF225612 clone AS01-10 prokMSA_id:043644 AF225616 clone AS01-14 prokMSA_id:048780 AF225621 clone AS01-19 prokMSA_id:034101 AF225622 clone AS01-20 prokMSA_id:039753 AF225626 clone AS01-24 prokMSA_id:030302 AF225627 clone AS01-25 prokMSA_id:052652 AF225628 clone AS01-26 prokMSA_id:042462 AF225630 clone AS01-28 prokMSA_id:028814 AF225632 clone AS01-30 prokMSA_id:038472 AF225641 clone AS08-09 prokMSA_id:074761 AF225656 clone AS08-27 prokMSA_id:027726 AF225661 clone AS08-32 prokMSA_id:074578 AF225670 clone AS17-07 prokMSA_id:020812 AF225680 clone AS17-20 prokMSA_id:033118 AF225685 clone AS17-26 prokMSA_id:018377 AF225690 clone AS17-32 prokMSA_id:018325 AF225691 clone AS17-33 prokMSA_id:019676 AF229774 TA01 prokMSA_id:049668 AF229777 TA04 prokMSA_id:043511 AF276443 clone RFLP 43A prokMSA_id:072855 AF364943 clone clH26arc prokMSA_id:032797 AF364944 clone clH28arc prokMSA_id:072889 AF374280 euryarchaeote EHB76 prokMSA_id:045829 AF388538 Dehalococcoides sp. clone DHC-kan prokMSA_id:019326 AF395423 Arc No. 5 prokMSA_id:038481 AF418924 clone HTA-A1 prokMSA_id:026408 AF418933 clone HTA-D5 prokMSA_id:022948 AF423188 Toluene-degrading methanogenic consortium M2 prokMSA_id:032447 AF424767 61-2 prokMSA_id:025452 AF424772 120A-4 prokMSA_id:058763 AF481336 clone Fuku01 prokMSA_id:070531 AF481337 clone Fuku02 prokMSA_id:070351 AF481338 clone Fuku03 prokMSA_id:072870 AF481339 clone Fuku04 prokMSA_id:074290 AF481344 clone Fuku09 prokMSA_id:056636 AF515510 euryarchaeote clone PPArcW30 prokMSA_id:064534 AF515518 euryarchaeote clone PPArcW53 prokMSA_id:000538 AJ009508 clone SJC-11b. prokMSA_id:000539 AJ009509 clone SJC-125a. prokMSA_id:000541 AJ009511 clone SJD-103. prokMSA_id:000542 AJ009512 clone SJD-105. prokMSA_id:000543 AJ009513 clone SJD-107. prokMSA_id:027475 AJ133791 Methanosaeta sp. Clone A1 prokMSA_id:000557 AJ236489 clone S15-8. prokMSA_id:000558 AJ236490 clone S15-9. prokMSA_id:000561 AJ236505 clone S15-24. prokMSA_id:000562 AJ236506 clone S15-25. prokMSA_id:021426 AJ244281 anaerobic methanogenic ET1-5 prokMSA_id:074486 AJ244288 anaerobic methanogenic E15-2 prokMSA_id:023906 AJ244290 anaerobic methanogenic E15-4 prokMSA_id:035617 AJ244291 anaerobic methanogenic E15-5 prokMSA_id:023885 AJ244293 anaerobic methanogenic E15-7 prokMSA_id:035600 AJ244294 anaerobic methanogenic E15-8 prokMSA_id:018934 AJ244295 anaerobic methanogenic E15-9 prokMSA_id:000555 AJ249242 clone R5. prokMSA_id:037746 AJ276397 Methanosaeta sp. AMPB-Zg prokMSA_id:034603 AJ288310 clone AC3 prokMSA_id:026327 AJ288313 clone AC6 prokMSA_id:025898 AJ288314 clone AC66 prokMSA_id:022619 AJ288315 clone AC7 prokMSA_id:035854 AJ288318 clone AC9 prokMSA_id:024592 AJ288321 clone AC106 prokMSA_id:037884 AJ288322 clone AC11 prokMSA_id:022779 AJ288323 clone AC19 prokMSA_id:027152 AJ288324 clone AC20 prokMSA_id:066894 AJ312015 clone SHB-23 prokMSA_id:066891 AJ312017 clone SHC-216 prokMSA_id:034822 AY053469 AT425_ArC3 prokMSA_id:021628 AY053470 AT425_ArC7 prokMSA_id:040801 AY053473 AT425_ArD7 prokMSA_id:018620 AY062229 clone GW70-10-2 prokMSA_id:042884 AY062231 clone GW70-10-49 prokMSA_id:032613 AY062233 clone GW70-20-13 prokMSA_id:019118 AY062234 clone GW70-20-23 prokMSA_id:025147 AY063602 clone RST-7 prokMSA_id:020045 AY063607 clone RST-12 prokMSA_id:080528 AY161260 clone SSADM_AG7 prokMSA_id:078514 AY175381 clone LH-02 prokMSA_id:078608 AY175391 clone MB-04 prokMSA_id:078578 AY175400 clone MB-12 prokMSA_id:078473 AY175405 clone MB-18 prokMSA_id:079006 AY177805 Methanosaeta sp. clone LH11 prokMSA_id:078641 AY177808 Methanosaeta sp. clone LH25 prokMSA_id:095199 AY211698 Methanosarcinales clone GoM GC234 028R prokMSA_id:098012 AY211700 Methanosarcinales clone GoM GC234 033R prokMSA_id:096075 AY211708 Methanosarcinales clone GoM GC234 619R prokMSA_id:097034 AY211712 Methanosarcinales clone GoM GC234 633R prokMSA_id:085045 AY228682 clone SSA1 prokMSA_id:085736 AY228688 clone SSA7 prokMSA_id:086331 AY231352 clone AR1R2_2 prokMSA_id:086469 AY231358 clone AR1_8 prokMSA_id:083308 AY239507 clone CARB_ASS2 prokMSA_id:086508 AY239527 clone CARB_AR2_3 prokMSA_id:086370 AY239528 clone CARB_AR2_4 prokMSA_id:086454 AY251025 euryarchaeote clone 15ar14 prokMSA_id:086012 AY256639 clone A1-107 prokMSA_id:084395 AY280645 clone G2-6 prokMSA_id:088768 AY297988 clone TA55_Ar_1 prokMSA_id:088291 AY297989 clone TA55_Ar_4 prokMSA_id:088313 AY297990 clone TA55_Ar_5 prokMSA_id:089044 AY297992 clone TA55_Ar_64 prokMSA_id:093829 AY324377 Methanosaetaceae clone BR34ARC_A09 prokMSA_id:092996 AY341319 ZAR123 prokMSA_id:091206 AY345512 clone W4A-A19 prokMSA_id:094220 AY368462 clone CM21 prokMSA_id:093446 AY368463 clone CM42 prokMSA_id:000524 X16932 Methanosaeta concilii str. Opfikon DSM 2139. prokMSA_id:000525 X51423 Methanosaeta concilii str. Opfikon. prokMSA_id:000566 Y15386 clone AB2. prokMSA_id:000568 Y15391 clone ABS11. prokMSA_id:000569 Y15392 clone ABS14. prokMSA_id:000570 Y15393 clone ABS18. prokMSA_id:000571 Y15396 clone ABS21. prokMSA_id:000572 Y15398 clone A5.1-A. prokMSA_id:000565 Y15402 Methanosaeta concilii str. VeAc9. prokMSA_id:000547 Y18082 clone Rot3. prokMSA_id:000548 Y18083 clone Rot4. prokMSA_id:000550 Y18087 clone Rot11. prokMSA_id:000551 Y18090 clone Rot16. prokMSA_id:000552 Y18091 clone Rot18. prokMSA_id:000553 Y18094 clone Rot25. 1.1.3.2.2.037 OTU 1 seq prokMSA_id:056331 AY102917 clone BCM3S-26A 1.1.3.2.2.038 OTU 1 seq prokMSA_id:061898 AJ310873 clone LKS24 1.1.3.2.2.039 OTU 1 seq prokMSA_id:062888 AB077215 Methanosarcinales clone:KuA5 1.1.3.2.2.040 OTU 3 seqs prokMSA_id:062889 AB077217 Methanosarcinales clone:KuA7 prokMSA_id:078914 AY175384 clone LH-05 prokMSA_id:078855 AY175402 clone MB-14 1.1.3.2.2.041 OTU 1 seq prokMSA_id:062891 AB077212 Methanosarcinales clone:KuA2 1.1.3.2.2.042 OTU 1 seq prokMSA_id:071136 AF354131 isolate SB-24a1A12 1.1.3.2.2.043 OTU 1 seq prokMSA_id:072917 AF220306 O23F7 1.1.3.2.2.044 OTU 1 seq prokMSA_id:092770 AY341320 ZAR50 1.1.3.2.2.045 OTU 5 seqs prokMSA_id:095152 AJ583386 clone S15A-MN67A prokMSA_id:094788 AJ583387 clone S15A-MN72A prokMSA_id:094474 AJ583388 clone S15A-MN187A prokMSA_id:094573 AJ583389 clone S15A-MN70A prokMSA_id:094498 AJ583390 clone S15A-MN145A 1.1.3.2.2.046 OTU 1 seq prokMSA_id:094871 AJ583391 clone S15A-MN154A 1.1.3.2.2.047 OTU 1 seq prokMSA_id:096000 AY211699 euryarchaeote clone GoM GC234 030R 1.1.3.2.2.999 poor quality 121 seqs prokMSA_id:000563 AB011293 clone MUG1. prokMSA_id:000564 AB011294 clone MUG2. prokMSA_id:000520 AB011329 clone TUG1. prokMSA_id:000521 AB011330 clone TUG2. prokMSA_id:029656 AB046177 GA01 prokMSA_id:042182 AB046179 GA04 prokMSA_id:022351 AB046182 GA42 prokMSA_id:032406 AB046185 GA67 prokMSA_id:032583 AB046186 GA77 prokMSA_id:074647 AB046194 HA10 prokMSA_id:028250 AB046196 HA19 prokMSA_id:032962 AB046197 HA25 prokMSA_id:068896 AB050247 SAGMA-17 prokMSA_id:031356 AB056000 WSB-18 prokMSA_id:024605 AB056001 WSB-19 prokMSA_id:029563 AB056003 WSB-21 prokMSA_id:051086 AB056027 OS-2 prokMSA_id:040998 AB056036 OS-11 prokMSA_id:032137 AB056043 OS-18 prokMSA_id:047717 AB056055 OS-30 prokMSA_id:089452 AB113832 clone:D1-11a prokMSA_id:090507 AB113836 clone:E2-4a prokMSA_id:088515 AB113839 clone:E2-11a prokMSA_id:089464 AB113840 clone:E2-12a prokMSA_id:090712 AB113841 clone:E2-13a prokMSA_id:089423 AB113843 clone:E2-17a prokMSA_id:088457 AB113845 clone:E2-23a prokMSA_id:093835 AB119558 Methanosarcinales clone:ESYB2 prokMSA_id:093688 AB119559 Methanosaetaceae clone:ESYB3 prokMSA_id:000530 AF015980 clone 2C9. prokMSA_id:000536 AF056365 unnamed organism. prokMSA_id:000575 AF126864 clone SYA-136. prokMSA_id:069954 AF334401 Methanosaeta thermoacetophila prokMSA_id:071737 AF374281 euryarchaeote EHB109 prokMSA_id:072790 AF374282 euryarchaeote EHB12 prokMSA_id:041510 AF376788 isolate MUAHR 1 prokMSA_id:053755 AF376789 isolate MUAHR 2 prokMSA_id:071814 AF447156 clone TDC-AR6 prokMSA_id:072882 AF455067 clone A2 prokMSA_id:070843 AF455069 clone A4 prokMSA_id:070478 AF455070 clone A5 prokMSA_id:064115 AF477911 clone 60-UMH 8% pond prokMSA_id:066226 AF509440 Methanosaeta concilii clone 12f prokMSA_id:066223 AF509442 Methanosaeta concilii clone 18f prokMSA_id:066221 AF509448 Methanosaeta concilii clone 35i prokMSA_id:066217 AF509449 Methanosaeta concilii clone 36i prokMSA_id:055457 AF509450 Methanosaeta concilii clone 37i prokMSA_id:066212 AF509451 Methanosaeta concilii clone 38i prokMSA_id:066214 AF509452 Methanosaeta concilii clone 39h prokMSA_id:066203 AF509464 Methanosaeta concilii clone 25 prokMSA_id:066202 AF509466 Methanosaeta concilii clone 36 prokMSA_id:064544 AF515501 euryarchaeote clone PPArcW10 prokMSA_id:064543 AF515503 euryarchaeote clone PPArcW5 prokMSA_id:064542 AF515504 euryarchaeote clone PPArcW8 prokMSA_id:055829 AF515505 euryarchaeote clone PPArcW15 prokMSA_id:064539 AF515509 euryarchaeote clone PPArcW29 prokMSA_id:064540 AF515511 euryarchaeote clone PPArcW31 prokMSA_id:064538 AF515512 euryarchaeote clone PPArcW34 prokMSA_id:064537 AF515513 euryarchaeote clone PPArcW38 prokMSA_id:056464 AF515514 euryarchaeote clone PPArcW39 prokMSA_id:064535 AF515515 euryarchaeote clone PPArcW40 prokMSA_id:064536 AF515516 euryarchaeote clone PPArcW44 prokMSA_id:056025 AF515517 euryarchaeote clone PPArcW50 prokMSA_id:064532 AF515519 euryarchaeote clone PPArcW57 prokMSA_id:064530 AF515520 euryarchaeote clone PPArcW60 prokMSA_id:047518 AH003996 Methanothrix thermoacetophila Z-517 DSM 4774 539 nt 3 segments prokMSA_id:000540 AJ009510 clone SJD-102. prokMSA_id:000544 AJ009514 clone SJD-111. prokMSA_id:000545 AJ009515 clone SJD-114. prokMSA_id:020980 AY032982 ASDS1 prokMSA_id:025238 AY032983 ASDS2 prokMSA_id:072944 AY055763 clone Gain6 prokMSA_id:042108 AY063604 clone RST-9 prokMSA_id:020847 AY063606 clone RST-11 prokMSA_id:036515 AY063610 clone RST-15 prokMSA_id:044454 AY063611 clone RST-16 prokMSA_id:046203 AY063612 clone RST-17 prokMSA_id:021310 AY063618 clone RST-23 prokMSA_id:044851 AY063620 clone RST-25 prokMSA_id:016914 AY063622 clone RST-27 prokMSA_id:016699 AY063627 clone RS300-2 prokMSA_id:051471 AY063665 clone RS0-10 prokMSA_id:017767 AY063670 clone RS0-15 prokMSA_id:046524 AY063688 clone RS500-3 prokMSA_id:039207 AY063691 clone RS500-6 prokMSA_id:036539 AY063715 clone RS500-30 prokMSA_id:083578 AY092154 clone AF42 prokMSA_id:085386 AY092155 clone AF69 prokMSA_id:084989 AY092156 clone AI1 prokMSA_id:086203 AY092157 clone AF98 prokMSA_id:086421 AY092158 clone AI82 prokMSA_id:082981 AY092159 clone AI105 prokMSA_id:082911 AY092160 clone AF49 prokMSA_id:083704 AY092161 clone AF2 prokMSA_id:060807 AY118146 Methanosaeta sp. clone OR-M6 prokMSA_id:056774 AY165973 clone FZ2bA56 prokMSA_id:085760 AY228684 clone SSA3 prokMSA_id:084422 AY228692 clone SSA11 prokMSA_id:085615 AY256640 clone A1-108 prokMSA_id:088988 AY294410 clone Stme5 prokMSA_id:092708 AY341321 ZAR51 prokMSA_id:092911 AY341322 ZAR53 prokMSA_id:092781 AY341323 ZAR57 prokMSA_id:092870 AY341324 ZAR59 prokMSA_id:094124 AY368459 Methanosaeta sp. clone CM06 prokMSA_id:097385 AY422329 Methanogenic F1/P-2 prokMSA_id:097079 AY422330 Methanogenic F4/P-2 prokMSA_id:097123 AY422331 Methanogenic F1/B-2 prokMSA_id:096141 AY422332 Methanogenic F4/B-2 prokMSA_id:000528 D88129 clone GU332. prokMSA_id:000519 M59141 Methanothrix thermophila prokMSA_id:000588 M59146 Methanosaeta concilii str. FE DSM 3013. prokMSA_id:000589 S42679 Methanosaeta concilii str. GP6 DSM 3671 . prokMSA_id:000591 S42683 Methanosaeta concilii str. UA. prokMSA_id:000590 S42711 Methanosaeta concilii str. PM. prokMSA_id:000518 S42714 Methanosaeta thermoacetophila str. CALS-1 DSM 3870. prokMSA_id:000522 S42717 Methanosaeta thermoacetophila str. Z-517 DSM 4774 . prokMSA_id:000523 S42728 Methanosaeta thermoacetophila str. PT DSM 6194 . prokMSA_id:000592 S42880 Methanosaeta concilii str. Opfikon DSM 2139. prokMSA_id:000527 U78204 clone SB95-41. prokMSA_id:000567 Y15389 clone ABS9. 1.1.3.3 MSR.SP_STR_R17 7 seqs 1.1.3.3.001 OTU 5 seqs prokMSA_id:031310 AF418926 clone HTA-B12 prokMSA_id:078521 AY175392 clone MB-05 prokMSA_id:078508 AY175394 clone MB-08 prokMSA_id:078794 AY175396 clone MB-08b prokMSA_id:000593 L48408 Methanosarcina sp. str. R17. 1.1.3.3.999 poor quality 2 seqs prokMSA_id:094042 AB119560 Methanosarcinales clone:ESYB4 prokMSA_id:098829 AY391874 euryarchaeote clone 15ar13 1.1.3.4 HALOPHILIC_ARCHAEA 601 seqs 1.1.3.4.1 HBM.GOMORRENSE_SUBGROUP 7 seqs 1.1.3.4.1.001 OTU 1 seq prokMSA_id:000599 AF142879 clone DEEP-5. 1.1.3.4.1.002 OTU 3 seqs prokMSA_id:000598 AF142880 clone DEEP-6. prokMSA_id:000597 AF142881 clone DEEP-7. prokMSA_id:000596 AF142882 clone DEEP-8. 1.1.3.4.1.003 OTU 1 seq prokMSA_id:000595 AF118659 clone pBRKC22. 1.1.3.4.1.999 poor quality 2 seqs prokMSA_id:023475 AF291157 EnvI-182 prokMSA_id:000594 L37444 Halobaculum gomorrense str. DS2807 DSM 9297 . 1.1.3.4.2 HF.VOLCANII_SUBGROUP 90 seqs 1.1.3.4.2.001 OTU 2 seqs prokMSA_id:045692 AH003665 Haloferax alicantei prokMSA_id:000611 M33803 Haloferax sp. str. Aa 2.2. 1.1.3.4.2.004 OTU 23 seqs prokMSA_id:047309 AB037474 Haloferax alexandrinus complete prokMSA_id:025672 AB074566 Haloferax volcanii prokMSA_id:000609 AF002984 Halogeometricum borinquense str. PR 3 ATCC 700274 . prokMSA_id:000606 AF015976 clone 2C82. prokMSA_id:029381 AF015988 2MT310 prokMSA_id:000608 AF069950 Haloferax D1227 str. D1227. prokMSA_id:042829 AJ276863 Halophilic PalaeII strain PalaeII prokMSA_id:089487 AY292395 Haloarchaeon 8AHG prokMSA_id:093156 AY341289 Halobacteriales ZAR25 prokMSA_id:092166 AY341300 Haloferax sp. M5 prokMSA_id:092985 AY341301 Haloferax sp. M6 prokMSA_id:093058 AY341302 Haloferax sp. M7 prokMSA_id:092319 AY341303 Haloferax sp. M8 prokMSA_id:092267 AY341304 Haloferax sp. M16 prokMSA_id:092724 AY341305 Haloferax sp. M14 prokMSA_id:095310 AY425724 Haloferax volcanii strain NCIMB 2012 prokMSA_id:000600 D11107 Haloferax mediterranei ATCC 33500 . prokMSA_id:000610 D13378 Haloferax gibbonsii ATCC 33959 . prokMSA_id:074464 D13378 Haloferax gibbonsii complete prokMSA_id:000603 D14128 Haloferax denitrificans ATCC 35960 . prokMSA_id:071072 D14128 Haloferax denitrificans complete prokMSA_id:000604 K00421 Haloferax volcanii str. DS-2 ATCC 29605 . prokMSA_id:000607 U68540 Haloferax volcanii str. E8. 1.1.3.4.2.005 OTU 1 seq prokMSA_id:000605 AF015964 clone 1MT315. 1.1.3.4.2.006 OTU 1 seq prokMSA_id:000602 AF142883 clone DEEP-9. 1.1.3.4.2.007 OTU 1 seq prokMSA_id:000601 AF142884 clone DEEP-10. 1.1.3.4.2.008 OTU 8 seqs prokMSA_id:019437 AJ278932 A140 prokMSA_id:023938 AJ278941 A177 prokMSA_id:044464 AJ278942 A178 prokMSA_id:053779 AJ308003 clone DIE1 prokMSA_id:028242 AJ344304 clone HW55 prokMSA_id:026024 AJ344308 clone HW11 prokMSA_id:017099 AJ344316 clone HW105 prokMSA_id:024969 AJ344317 clone HW54 1.1.3.4.2.009 OTU 4 seqs prokMSA_id:070611 AJ308019 clone DIE28 prokMSA_id:050299 AJ344303 clone HW5 prokMSA_id:046041 AJ344312 clone HW3 prokMSA_id:024020 AJ344318 clone HW10 1.1.3.4.2.010 OTU 2 seqs prokMSA_id:035866 AF142983 ORGANIC5_A prokMSA_id:037132 AF142985 ORGANIC1_A 1.1.3.4.2.011 OTU 1 seq prokMSA_id:039274 AF196290 JDS-1 1.1.3.4.2.012 OTU 5 seqs prokMSA_id:064104 AF477927 clone 8-UMH 22% pond prokMSA_id:064096 AF477935 clone 2-UMH 31% pond prokMSA_id:064090 AF477940 clone 42-UMH 31% pond prokMSA_id:043013 X84084 Unknown organism prokMSA_id:039318 X84331 Unknown PCR fragment of an archaeal microorganism 1.1.3.4.2.013 OTU 1 seq prokMSA_id:062506 AF513927 euryarchaeote clone LA1-A10 1.1.3.4.2.014 OTU 1 seq prokMSA_id:064094 AF477937 clone 32-UMH 31% pond 1.1.3.4.2.015 OTU 3 seqs prokMSA_id:066403 AF505660 haloarchaeon clone ZB-A1 prokMSA_id:066366 AF505698 haloarchaeon clone ZB-A42 prokMSA_id:066358 AF505706 haloarchaeon clone ZB-A52 1.1.3.4.2.016 OTU 1 seq prokMSA_id:073884 AJ308016 clone FCII3 1.1.3.4.2.017 OTU 1 seq prokMSA_id:082980 AJ495702 euryarchaeote isolate SA-ARCH10 1.1.3.4.2.020 OTU 3 seqs prokMSA_id:090060 AY292396 Haloarchaeon 10AH prokMSA_id:089911 AY292397 Haloarchaeon 9AH prokMSA_id:089419 AY292398 Haloarchaeon 14AHG 1.1.3.4.2.021 OTU 1 seq prokMSA_id:092171 AY341291 Halobacteriales ZAR29 1.1.3.4.2.022 OTU 1 seq prokMSA_id:092381 AY341294 Halobacteriales ZAR40 1.1.3.4.2.999 poor quality 30 seqs prokMSA_id:041199 AF015982 2MT103 prokMSA_id:051298 AF211309 Halobacteriales MT11 prokMSA_id:022819 AF211310 Halobacteriales MT18 prokMSA_id:039688 AF291156 EnvI-181 prokMSA_id:051441 AF291158 EnvI-184 prokMSA_id:064102 AF477925 clone 24-UMH 22% pond prokMSA_id:064103 AF477928 clone 1-PML 22% pond prokMSA_id:064099 AF477930 clone 3-PML 22% pond prokMSA_id:064097 AF477933 clone 4-PML 22% pond prokMSA_id:064092 AF477934 clone 5-PML 22% pond prokMSA_id:064086 AF477945 clone 5-PML 31% pond prokMSA_id:064078 AF477953 prokaryote isolate DGGE Band 506-ICM 15% pond prokMSA_id:071057 AF477954 prokaryote isolate DGGE Band 508-ICM 15% pond prokMSA_id:064074 AF477955 prokaryote isolate DGGE Band 513-ICM 37% pond prokMSA_id:055608 AF506945 haloarchaeon HC22 prokMSA_id:047968 AJ270242 Haloarchaeon str. T1.3 strain T1.3 prokMSA_id:072457 AJ308007 clone DIE3 prokMSA_id:084898 AJ495694 euryarchaeote isolate SA-ARCH1 prokMSA_id:085156 AJ495695 euryarchaeote isolate SA-ARCH2 prokMSA_id:085435 AJ495699 euryarchaeote isolate SA-ARCH6 prokMSA_id:083715 AJ495706 euryarchaeote isolate SA-ARCH14 prokMSA_id:083251 AJ495712 euryarchaeote isolate SA-ARCH23 prokMSA_id:083198 AJ495715 euryarchaeote isolate SA-ARCH26 prokMSA_id:084150 AJ495718 euryarchaeote isolate SA-ARCH29 prokMSA_id:057393 AJ517889 clone mCMC38.3 prokMSA_id:056062 AJ517894 clone mOO13.3 prokMSA_id:057385 AJ517900 clone E8.2 prokMSA_id:090017 AJ566770 haloarchaeon clone DGGE band 01 prokMSA_id:088647 AJ566783 haloarchaeon clone DGGE band 18 prokMSA_id:089545 AJ566784 haloarchaeon clone DGGE band C 1.1.3.4.3 HR.SACCHAROVORUM_SUBGROUP 112 seqs 1.1.3.4.3.002 OTU 1 seq prokMSA_id:000629 AF118666 clone pBRKC125. 1.1.3.4.3.003 OTU 1 seq prokMSA_id:000628 AF118667 clone pBRKC128. 1.1.3.4.3.004 OTU 1 seq prokMSA_id:000623 X53570 Halorubrum saccharovorum NCIMB 2081 . 1.1.3.4.3.005 OTU 1 seq prokMSA_id:000620 AF118663 clone pBRKC101. 1.1.3.4.3.006 OTU 1 seq prokMSA_id:000619 AF118665 clone pBRKC112. 1.1.3.4.3.007 OTU 3 seqs prokMSA_id:053794 AJ278935 A151 prokMSA_id:072249 AJ278937 A154 prokMSA_id:023696 AJ344306 clone HW107 1.1.3.4.3.009 OTU 1 seq prokMSA_id:056715 AF199373 Euryarchaeote D4.75-18 1.1.3.4.3.010 OTU 1 seq prokMSA_id:064091 AF477939 clone 4-UMH 31% pond 1.1.3.4.3.011 OTU 1 seq prokMSA_id:064120 AF477905 clone 44-UMH 8% pond 1.1.3.4.3.012 OTU 1 seq prokMSA_id:064121 AF477906 clone 11-UMH 8% pond 1.1.3.4.3.014 OTU 30 seqs prokMSA_id:000631 AF142875 Halorubrum DEEP-1. prokMSA_id:000630 AF142984 clone ORGANIC4_A. prokMSA_id:045762 AF435111 Halorubrum tibetense prokMSA_id:064080 AF477950 'A319-UMH 31% pond' prokMSA_id:066396 AF505667 haloarchaeon clone ZB-A8 prokMSA_id:066379 AF505686 haloarchaeon clone ZB-A30 prokMSA_id:066374 AF505691 haloarchaeon clone ZB-A35 prokMSA_id:066370 AF505694 haloarchaeon clone ZB-A38 prokMSA_id:066259 AF506958 Halophilic SC3 prokMSA_id:066254 AF506963 Halophilic HS47 prokMSA_id:035867 AJ270246 Haloarchaeon str. MAlk006.3 strain MAlk006.3 prokMSA_id:026531 AJ308009 clone EMF12 prokMSA_id:071801 AJ308014 clone FC6 prokMSA_id:043177 AJ400624 Halophilic NaxosII strain NaxosII prokMSA_id:085277 AJ495731 euryarchaeote isolate SB-ARCH16 prokMSA_id:083299 AJ495735 euryarchaeote isolate SB-ARCH22 prokMSA_id:057545 AY149598 Halorubrum tibetense strain 8W8 prokMSA_id:096991 AY422456 Halobacterium sp. 1TK1 prokMSA_id:071191 D13379 Halobacterium sodomense complete prokMSA_id:000622 D13379 Halorubrum sodomense str. RD-26 ATCC 33755 . prokMSA_id:000613 D32081 Halobacterium AUS-1. prokMSA_id:000617 D32082 Halobacterium AUS-2. prokMSA_id:000615 D63572 Halorubrum distributum str. I-M JCM 9100. prokMSA_id:000626 D87972 Halorubrum vacuolatum str. M24 JCM 9060. prokMSA_id:000612 L00922 Halobacterium sp. str. Ch2 ACM 3911. prokMSA_id:042756 S70839 Halobacterium=halophilic Ch2 Genomic 1469 nt prokMSA_id:000625 U17364 Halorubrum saccharovorum JCM 8865 . prokMSA_id:000632 U17365 Halorubrum lacusprofundi JCM 8891 . prokMSA_id:000616 X82168 Halorubrum trapanicum NRC 34021 . prokMSA_id:000627 X82170 Halorubrum lacusprofundi ACAM 34 . 1.1.3.4.3.016 OTU 14 seqs prokMSA_id:066399 AF505664 haloarchaeon clone ZB-A5 prokMSA_id:066397 AF505666 haloarchaeon clone ZB-A7 prokMSA_id:066388 AF505676 haloarchaeon clone ZB-A17 prokMSA_id:066385 AF505677 haloarchaeon clone ZB-A18 prokMSA_id:056457 AF505687 haloarchaeon clone ZB-A31 prokMSA_id:066380 AF505688 haloarchaeon clone ZB-A32 prokMSA_id:066373 AF505690 haloarchaeon clone ZB-A34 prokMSA_id:066369 AF505693 haloarchaeon clone ZB-A37 prokMSA_id:066365 AF505699 haloarchaeon clone ZB-A43 prokMSA_id:066360 AF505704 haloarchaeon clone ZB-A49 prokMSA_id:066356 AF505708 haloarchaeon clone ZB-A54 prokMSA_id:066355 AF505710 haloarchaeon clone ZB-A57 prokMSA_id:066347 AF505717 haloarchaeon clone ZB-A67 prokMSA_id:066345 AF505719 haloarchaeon clone ZB-A69 1.1.3.4.3.017 OTU 1 seq prokMSA_id:066351 AF505712 haloarchaeon clone ZB-A61 1.1.3.4.3.018 OTU 2 seqs prokMSA_id:066368 AF505696 haloarchaeon clone ZB-A40 prokMSA_id:066354 AF505709 haloarchaeon clone ZB-A56 1.1.3.4.3.019 OTU 4 seqs prokMSA_id:066401 AF505662 haloarchaeon clone ZB-A3 prokMSA_id:066394 AF505670 haloarchaeon clone ZB-A11 prokMSA_id:066386 AF505679 haloarchaeon clone ZB-A21 prokMSA_id:066372 AF505692 haloarchaeon clone ZB-A36 1.1.3.4.3.020 OTU 1 seq prokMSA_id:066400 AF505663 haloarchaeon clone ZB-A4 1.1.3.4.3.021 OTU 1 seq prokMSA_id:082766 AJ495732 euryarchaeote isolate SB-ARCH17 1.1.3.4.3.022 OTU 1 seq prokMSA_id:084654 AJ495733 euryarchaeote isolate SB-ARCH18 1.1.3.4.3.999 poor quality 46 seqs prokMSA_id:048106 AF291159 Mixed culture haloarchaeon YE.LI-230 prokMSA_id:024366 AF291160 Mixed culture haloarchaeon CLI-248 prokMSA_id:020374 AF291161 Mixed culture haloarchaeon CLI-250 prokMSA_id:048984 AF291162 Mixed culture haloarchaeon CLI-257 prokMSA_id:022643 AF291163 Mixed culture haloarchaeon CLI-265 prokMSA_id:047743 AF291164 Mixed culture haloarchaeon CDI-271 prokMSA_id:045690 AF291167 Mixed culture haloarchaeon CDI-276 prokMSA_id:064098 AF477931 clone 2a-PML 22% pond prokMSA_id:064088 AF477942 clone 2-PML 31% pond prokMSA_id:074371 AF477944 clone 4-PML 31% pond prokMSA_id:064081 AF477946 'A215-UMH 22% pond' prokMSA_id:064082 AF477947 'AN201-UMH 22% pond' prokMSA_id:064079 AF477948 'A311-UMH 31% pond' prokMSA_id:064076 AF477949 'A315-UMH 31% pond' prokMSA_id:055641 AF477951 'A356-UMH 31% pond' prokMSA_id:064075 AF477952 'A363-UMH 31% pond' prokMSA_id:066389 AF505674 haloarchaeon clone ZB-A15 prokMSA_id:066255 AF506960 Halophilic 1SC5 prokMSA_id:066252 AF506962 Halophilic DH34 prokMSA_id:000621 AJ002943 Halorubrum SC1.2 str. SC1.2. prokMSA_id:000614 AJ002944 Halorubrum GSL5.48 str. GSL5.48. prokMSA_id:022600 AJ270240 Haloarchaeon str. T1.6 strain T1.6 prokMSA_id:052061 AJ270243 Haloarchaeon str. B2S.26 strain B2S.26 prokMSA_id:039652 AJ270244 Haloarchaeon str. BbpA.3 strain BbpA.3 prokMSA_id:038950 AJ270245 Haloarchaeon str. GluBr1.1 strain GluBr1.1 prokMSA_id:020273 AJ270247 Haloarchaeon str. Nh.5 strain Nh.5 prokMSA_id:021492 AJ270248 Haloarchaeon str. PW1.1 strain PW1.1 prokMSA_id:034463 AJ270249 Haloarchaeon str. PIG.8 strain PIG.8 prokMSA_id:043345 AJ270250 Haloarchaeon str. WB4E.8 strain WB4E.8 prokMSA_id:023129 AJ270251 Haloarchaeon str. 54R strain 54R prokMSA_id:052185 AJ276887 Halorubrum tebenquichense strain ALT6-92 prokMSA_id:071782 AJ307999 clone DIE41 prokMSA_id:073791 AJ308008 clone FCII19 prokMSA_id:083759 AJ495730 euryarchaeote isolate SB-ARCH14 prokMSA_id:085411 AJ495740 euryarchaeote isolate SB-ARCH28 prokMSA_id:083378 AJ495741 euryarchaeote isolate SB-ARCH29 prokMSA_id:088972 AJ566771 haloarchaeon clone DGGE band 02 prokMSA_id:089811 AJ566776 haloarchaeon clone DGGE band 09 prokMSA_id:090001 AJ566778 haloarchaeon clone DGGE band 12 prokMSA_id:090544 AJ566782 haloarchaeon clone DGGE band 17 prokMSA_id:040339 X53567 Halobacterium lacusprofundi part 1 prokMSA_id:050562 X53569 Halobacterium lacusprofundi part 3 prokMSA_id:026543 X53571 Halobacterium saccharovorum part 2 prokMSA_id:035023 X53572 Halobacterium saccharovorum part 3 prokMSA_id:000624 X82167 Halorubrum saccharovorum NCIMB 2081 . prokMSA_id:000618 X82169 Halorubrum sodomense str. RD-26 ATCC 33755 . 1.1.3.4.4 HB.HALOBIUM_SUBGROUP 90 seqs 1.1.3.4.4.001 OTU 68 seqs prokMSA_id:050435 AB074299 Halobacterium salinarum prokMSA_id:040871 AB074301 Halobacterium sp. NCIMB 733 prokMSA_id:023901 AB074565 Halobacterium sp. NCIMB 741 prokMSA_id:068649 AB081731 Halobacterium sp. JCM 9447 prokMSA_id:048009 AE004437 Halobacterium sp. NRC-1 complete genome prokMSA_id:032933 AE005128 Halobacterium sp. NRC-1 section 159 of 170 of the complete genome prokMSA_id:000635 AF110768 Halobacterium 9R str. 9R. prokMSA_id:047635 AF355101 Halobacterium sp. JP-6 prokMSA_id:055254 AF506939 haloarchaeon HC1 prokMSA_id:066275 AF506940 haloarchaeon HC12 prokMSA_id:055509 AF506944 haloarchaeon HC2 prokMSA_id:066271 AF506946 haloarchaeon HC27 prokMSA_id:066270 AF506947 haloarchaeon HC3 prokMSA_id:056193 AF506948 haloarchaeon HC30 prokMSA_id:066266 AF506949 haloarchaeon HC32 prokMSA_id:066267 AF506952 haloarchaeon HC38 prokMSA_id:066265 AF506953 haloarchaeon HC4 prokMSA_id:066263 AF506954 haloarchaeon HC5 prokMSA_id:066262 AF506956 haloarchaeon HC7 prokMSA_id:066258 AF506957 haloarchaeon HC8 prokMSA_id:056380 AH000908 H.cutirubrum cluster and Ala-tRNA complete; 23S 5' end prokMSA_id:044211 AJ270238 Haloarchaeon str. B1bra.5 strain B1bra.5 prokMSA_id:038000 AJ270239 Haloarchaeon str. BbpA.1 strain BbpA.1 prokMSA_id:071531 AJ278933 A145 prokMSA_id:073008 AJ278934 A148 prokMSA_id:021206 AJ278936 A153 prokMSA_id:022613 AJ278938 A157 prokMSA_id:069961 AJ278939 A174 prokMSA_id:053293 AJ278940 A175 prokMSA_id:052115 AJ308004 clone DIE4 prokMSA_id:055344 AJ319550 haloarchaeon clone Poland-10 prokMSA_id:064772 AJ319551 haloarchaeon clone Poland-12 prokMSA_id:055561 AJ319552 haloarchaeon clone Poland-15 prokMSA_id:064771 AJ319553 haloarchaeon clone Poland-17 prokMSA_id:064770 AJ319554 haloarchaeon clone Poland-1 prokMSA_id:064769 AJ319555 haloarchaeon clone Poland-2 prokMSA_id:064768 AJ319556 haloarchaeon clone Poland-22 prokMSA_id:064767 AJ319557 haloarchaeon clone Poland-3 prokMSA_id:064766 AJ319558 haloarchaeon clone Poland-4 prokMSA_id:064765 AJ319559 haloarchaeon clone Poland-6 prokMSA_id:064764 AJ319560 haloarchaeon clone Poland-7 prokMSA_id:064762 AJ319561 haloarchaeon clone Poland-9 prokMSA_id:039315 AJ344301 clone HW12 prokMSA_id:022533 AJ344302 clone HW16 prokMSA_id:032450 AJ344313 clone HW31 prokMSA_id:049755 AJ344319 clone HW56 prokMSA_id:018744 AJ420165 euryarchaeote clone PSPIHH28-27 prokMSA_id:046844 AJ420166 euryarchaeote clone PSPIMM28-20 prokMSA_id:041569 AJ420167 Halobacterium salinarum prokMSA_id:063193 AJ496185 Halobacterium salinarum strain DSM 3754T prokMSA_id:081508 AJ548827 Halobacterium sp. A1 prokMSA_id:081073 AJ549436 Halobacterium salinarum strain SHR prokMSA_id:077932 AY171366 clone s103 prokMSA_id:077682 AY171377 clone s97m prokMSA_id:083852 AY232297 Halobacterium sp. HM01 prokMSA_id:083927 AY232298 Halobacterium sp. HM02 prokMSA_id:086046 AY232299 Halobacterium sp. HM11 prokMSA_id:082712 AY232300 Halobacterium sp. HM13 prokMSA_id:095585 AY422461 Halobacterium sp. 1TK2 prokMSA_id:096936 AY422463 Halobacterium sp. 1TK3 prokMSA_id:000640 D14127 Halobacterium sp. str. Y12. prokMSA_id:070968 D14127 Halobacterium sp. complete prokMSA_id:000641 K02971 Halobacterium cutirubrum str. clone lambda-Hc4. prokMSA_id:000634 M11583 Halobacterium halobium str. R1. prokMSA_id:000637 M38280 Halobacterium halobium. prokMSA_id:054099 NC_002607 Halobacterium sp. NRC-1 complete genome prokMSA_id:000636 U68538 Halobacterium salinarum str. E12. prokMSA_id:000633 X03407 Halobacterium halobium str. R1. 1.1.3.4.4.002 OTU 1 seq prokMSA_id:000639 AB012051 str. MSP9. 1.1.3.4.4.003 OTU 1 seq prokMSA_id:026302 AF211313 Halobacteriales MT14 1.1.3.4.4.004 OTU 1 seq prokMSA_id:037525 AF199372 D3.5-B 1.1.3.4.4.005 OTU 1 seq prokMSA_id:041147 AF211311 Halobacteriales MT15 1.1.3.4.4.006 OTU 1 seq prokMSA_id:049296 AJ347778 euryarchaeote clone ST-3K67A 1.1.3.4.4.007 OTU 1 seq prokMSA_id:066352 AF505713 haloarchaeon clone ZB-A62 1.1.3.4.4.008 OTU 1 seq prokMSA_id:066364 AF505700 haloarchaeon clone ZB-A44 1.1.3.4.4.009 OTU 1 seq prokMSA_id:076261 AY164326 haloarchaeon clone ULIA-33 1.1.3.4.4.010 OTU 1 seq prokMSA_id:083053 AJ495701 euryarchaeote isolate SA-ARCH8 1.1.3.4.4.999 poor quality 13 seqs prokMSA_id:066272 AF506938 haloarchaeon 2HC9 prokMSA_id:066274 AF506941 haloarchaeon HC14 prokMSA_id:066273 AF506942 haloarchaeon HC15 prokMSA_id:066269 AF506943 haloarchaeon HC18 prokMSA_id:066268 AF506950 haloarchaeon HC33 prokMSA_id:055559 AF506951 haloarchaeon HC37 prokMSA_id:000638 AJ000676 str. HB3-1. prokMSA_id:041317 AJ270235 Haloarchaeon str. 004.1 strain 004.1 prokMSA_id:033134 AJ270236 Haloarchaeon str. PW5.4 strain PW5.4 prokMSA_id:016446 AJ270237 Haloarchaeon str. WM2C.13 strain WM2C.13 prokMSA_id:052645 AJ291416 H1-K19 prokMSA_id:044347 AJ291417 H1-K16 prokMSA_id:000642 X92978 Halobacterium salinarium. 1.1.3.4.5 NTM.PHARAONIS 28 seqs 1.1.3.4.5.001 OTU 9 seqs prokMSA_id:066384 AF505678 haloarchaeon clone ZB-A20 prokMSA_id:066376 AF505685 haloarchaeon clone ZB-A27 prokMSA_id:066348 AF505715 haloarchaeon clone ZB-A65 prokMSA_id:070801 AJ308012 clone EMF51 prokMSA_id:027407 AJ344320 clone HW23 prokMSA_id:083471 AJ495721 euryarchaeote isolate SB-ARCH3 prokMSA_id:084382 AJ495727 euryarchaeote isolate SB-ARCH11 prokMSA_id:082686 AJ495729 euryarchaeote isolate SB-ARCH13 prokMSA_id:000643 D87971 Natronomonas pharaonis str. Gabara JCM 8858 . 1.1.3.4.5.002 OTU 2 seqs prokMSA_id:064113 AF477912 clone 63-UMH 8% pond prokMSA_id:064100 AF477926 clone 1-UMH 22% pond 1.1.3.4.5.003 OTU 1 seq prokMSA_id:066367 AF505697 haloarchaeon clone ZB-A41 1.1.3.4.5.004 OTU 1 seq prokMSA_id:066382 AF505681 haloarchaeon clone ZB-A23 1.1.3.4.5.005 OTU 1 seq prokMSA_id:086055 AJ495724 euryarchaeote isolate SB-ARCH8 1.1.3.4.5.006 OTU 1 seq prokMSA_id:086271 AJ495720 euryarchaeote isolate SB-ARCH2 1.1.3.4.5.007 OTU 1 seq prokMSA_id:092386 AY341288 Halobacteriales ZAR23 1.1.3.4.5.008 OTU 1 seq prokMSA_id:092879 AY341290 Halobacteriales ZAR26 1.1.3.4.5.009 OTU 1 seq prokMSA_id:092938 AY341296 Halobacteriales ZAR44 1.1.3.4.5.999 poor quality 10 seqs prokMSA_id:046481 AJ270230 Haloarchaeon str. Nh.2 Nh.2 strain Nh.2 prokMSA_id:073294 AJ308005 clone EMF2 prokMSA_id:086034 AJ495707 euryarchaeote isolate SA-ARCH17 prokMSA_id:056234 AJ517877 clone mHK12.1 prokMSA_id:057397 AJ517879 clone mHK36.1 prokMSA_id:057392 AJ517890 clone mCMC38.5 prokMSA_id:057395 AJ517891 clone mCMC46.5 prokMSA_id:057391 AJ517892 clone mCMC46.6 prokMSA_id:057390 AJ517895 clone mOO44.2 prokMSA_id:057386 AJ517901 clone E10.1 1.1.3.4.6 NTC.AMYLOLYTICUS_SUBGROUP 121 seqs 1.1.3.4.6.010 OTU 2 seqs prokMSA_id:017936 AF015967 2C129 prokMSA_id:000658 AF015984 clone 2MT16. 1.1.3.4.6.011 OTU 1 seq prokMSA_id:000659 AF142876 clone DEEP-2. 1.1.3.4.6.014 OTU 7 seqs prokMSA_id:000649 AB012049 str. MSP1. prokMSA_id:000650 AB012052 str. MSP11. prokMSA_id:000651 AB012053 str. MSP12. prokMSA_id:000653 AB012055 str. MSP16. prokMSA_id:000654 AB012056 str. MSP17. prokMSA_id:000655 AB012057 str. MSP22. prokMSA_id:000656 AB012058 str. MSP23. 1.1.3.4.6.015 OTU 1 seq prokMSA_id:000652 AB012054 str. MSP14. 1.1.3.4.6.016 OTU 1 seq prokMSA_id:000645 AB009624 Halobacterium sp. str. arg-4. 1.1.3.4.6.017 OTU 1 seq prokMSA_id:018525 X92170 sp. Little Lake Magadi isolate 93dLM4 1.1.3.4.6.018 OTU 2 seqs prokMSA_id:029270 AJ344309 clone HW8 prokMSA_id:021201 AJ344311 clone HW88 1.1.3.4.6.021 OTU 2 seqs prokMSA_id:027978 AB073365 Halobacterium cutirubrum NCIMB 763 operon prokMSA_id:036299 AB073366 Halobacterium cutirubrum NCIMB 763 rrnB operon 1.1.3.4.6.022 OTU 2 seqs prokMSA_id:028138 AB049461 Natrialba sp. Tunisia HMg-25 complete prokMSA_id:036767 AB049462 Natrialba sp. Tunisia HMg-27 1.1.3.4.6.023 OTU 1 seq prokMSA_id:033887 X92171 sp. Lake Magadi isolate 82M4 1.1.3.4.6.024 OTU 1 seq prokMSA_id:037730 AF333759 Halobacteriaceae gen. sp. 56 1.1.3.4.6.025 OTU 1 seq prokMSA_id:046014 AJ278931 A016 clone A016 1.1.3.4.6.026 OTU 2 seqs prokMSA_id:049132 AJ344314 clone HW22 prokMSA_id:046771 AJ344315 clone HW25 1.1.3.4.6.030 OTU 71 seqs prokMSA_id:000665 AB004878 Haloterrigena turkmenica str. 4 VKM B-1734 . prokMSA_id:000660 AB005656 Natronobacterium tibetense str. GA33. prokMSA_id:024766 AB023426 Natrinema versiforme prokMSA_id:074440 AB045012 Natronobacterium sp. C231 prokMSA_id:021979 AB046875 Natrialba asiatica prokMSA_id:047016 AB046926 Natronorubrum sp. Wadi Natrun-19 prokMSA_id:028549 AB046927 Natronorubrum sp. Tenzan-10 prokMSA_id:051196 AF009601 Natronobacterium innermongoliae prokMSA_id:000667 AF015989 clone 2MT320. prokMSA_id:000647 AF027738 Halorubrum trapanicum NCMB 784. prokMSA_id:000646 AF115478 Natrinema thermotolerans str. PR 5. prokMSA_id:052324 AF251285 Natronococcus xinjiangense prokMSA_id:038317 AF251941 Natrialba aegyptiaca small subunit complete prokMSA_id:072475 AF262026 Natrialba hulunbeirensis AS1.1986 prokMSA_id:043132 AF333760 Halobacteriaceae gen. sp. 135 prokMSA_id:045943 AF367370 Natrinema sp. R-fish prokMSA_id:030847 AF424771 38B-1 prokMSA_id:032775 AF424774 41-1 prokMSA_id:040112 AF478471 Halobacteriaceae gen. sp. H1 prokMSA_id:066402 AF505661 haloarchaeon clone ZB-A2 prokMSA_id:066398 AF505665 haloarchaeon clone ZB-A6 prokMSA_id:066393 AF505668 haloarchaeon clone ZB-A9 prokMSA_id:066395 AF505669 haloarchaeon clone ZB-A10 prokMSA_id:066391 AF505672 haloarchaeon clone ZB-A13 prokMSA_id:066383 AF505682 haloarchaeon clone ZB-A24 prokMSA_id:066378 AF505683 haloarchaeon clone ZB-A25 prokMSA_id:066377 AF505684 haloarchaeon clone ZB-A26 prokMSA_id:066375 AF505689 haloarchaeon clone ZB-A33 prokMSA_id:066371 AF505695 haloarchaeon clone ZB-A39 prokMSA_id:066362 AF505701 haloarchaeon clone ZB-A45 prokMSA_id:066359 AF505702 haloarchaeon clone ZB-A46 prokMSA_id:066361 AF505703 haloarchaeon clone ZB-A47 prokMSA_id:066353 AF505711 haloarchaeon clone ZB-A58 prokMSA_id:066350 AF505714 haloarchaeon clone ZB-A63 prokMSA_id:066349 AF505716 haloarchaeon clone ZB-A66 prokMSA_id:000669 AJ001376 Natronobacterium wudunaoensis str. Y21. prokMSA_id:058361 AJ003193 Natronobacterium chagannuoerensis prokMSA_id:000671 AJ004806 Natronobacterium chahannaoensis str. C112. prokMSA_id:045727 AJ308002 clone DIE25 prokMSA_id:033874 AJ344305 clone HW14 prokMSA_id:024443 AJ344310 clone HW13 prokMSA_id:058987 AY055733 Haloterrigena thermotolerans prokMSA_id:081102 AY208972 Natrinema ajinwuensis prokMSA_id:083240 AY232296 Natrinema sp. HM06 prokMSA_id:087196 AY277581 Natronococcus aibiensis prokMSA_id:086744 AY277582 Natronococcus altunensis prokMSA_id:086958 AY277583 Natrinema aibiensis prokMSA_id:087483 AY277584 Natrinema altuensis prokMSA_id:090753 AY298734 Natrinema aidingensis prokMSA_id:091085 AY330331 Haloterrigena turpansis prokMSA_id:097250 AY379525 Natrialba aibiensis prokMSA_id:098122 AY422457 Natrinema sp. 2TK1 prokMSA_id:096676 AY422460 Natrinema sp. 5TK1 prokMSA_id:000673 D14123 str. 172P1. prokMSA_id:072038 D14123 Natrialba asiatica prokMSA_id:000670 D14124 str. B1T. prokMSA_id:073832 D14124 Natrialba asiatica prokMSA_id:000644 D14125 Halorubrum trapanicum NCIMB 767. prokMSA_id:072482 D14125 Halobacterium trapanicum complete prokMSA_id:000666 D14126 str. L-11. prokMSA_id:074122 D14126 Halophilic archaeum complete prokMSA_id:000675 D43628 Natronococcus amylolyticus str. Ah-36 JCM 9655 . prokMSA_id:034918 D87970 Natronobacterium gregoryi prokMSA_id:000672 D88256 Natrialba ATCC 43988 str. SSL1 ATCC 43988. prokMSA_id:000668 X72495 Natrialba magadii NCIMB 2190 . prokMSA_id:032934 X92172 sp. Lake Magadi isolate 89M4 prokMSA_id:032045 X92173 sp. Little Lake Magadi isolate 93lLM4 prokMSA_id:043283 X92174 sp. Lake Natron isolate 98NT4 prokMSA_id:042055 X92175 sp. Lake Magadi isolate 86M4 prokMSA_id:000657 Y14028 Natronorubrum bangense str. A33 AS 1.1984 . prokMSA_id:000674 Z28378 Natronococcus occultus ATCC 43101 . 1.1.3.4.6.031 OTU 1 seq prokMSA_id:066381 AF505680 haloarchaeon clone ZB-A22 1.1.3.4.6.032 OTU 6 seqs prokMSA_id:088880 AY292388 Haloarchaeon HA25 clone 1 prokMSA_id:089998 AY292389 Haloarchaeon HA25 clone 2 prokMSA_id:089474 AY292392 Haloarchaeon 30AH clone 1 prokMSA_id:089346 AY292393 Haloarchaeon 30AH clone 2 prokMSA_id:090606 AY292394 Haloarchaeon W1 clone 1 prokMSA_id:093155 AY341292 Halobacteriales ZAR31 1.1.3.4.6.999 poor quality 19 seqs prokMSA_id:018356 AF211308 Halobacteriales MT13 prokMSA_id:025841 AF472595 Sambhar Salt Lake HA1 prokMSA_id:032929 AF472596 Sambhar Salt Lake HA6 prokMSA_id:066387 AF505675 haloarchaeon clone ZB-A16 prokMSA_id:000648 AJ002945 unnamed organism. prokMSA_id:000662 AJ002946 unnamed organism. prokMSA_id:000664 AJ002947 Natrinema pellirubrum NCIMB 786 . prokMSA_id:000663 AJ002948 Natrinema pallidum NCIMB 784. prokMSA_id:000661 AJ002949 Natrinema pallidum NCIMB 777 . prokMSA_id:029581 AJ270241 Haloarchaeon str. PIG.5 strain PIG.5 prokMSA_id:070933 AJ291423 S3-K5 prokMSA_id:073093 AJ291424 S3-K25 prokMSA_id:071720 AJ291426 S3-K15 prokMSA_id:073286 AJ291427 S3-K14 prokMSA_id:071303 AJ308000 clone DIE43 prokMSA_id:073613 AJ308013 clone EMF53 prokMSA_id:090069 AY292390 Haloarchaeon HA15 clone 2 prokMSA_id:090284 AY292391 Haloarchaeon HA15 clone 1 prokMSA_id:093110 AY341293 Halobacteriales ZAR39 1.1.3.4.7 HC.MORRHUAE_SUBGROUP 33 seqs 1.1.3.4.7.001 OTU 10 seqs prokMSA_id:017584 AB074302 Halobacterium sp. NCIMB 734 prokMSA_id:038435 AB074303 Halobacterium sp. NCIMB 765 operon prokMSA_id:027023 AB074304 Halobacterium sp. NCIMB 765 rrnB operon prokMSA_id:052396 AJ344307 clone HW50 prokMSA_id:039472 AJ420376 Halococcus dombrowskii strain H4 prokMSA_id:083880 AY243109 Halococcus qingdaogense complete prokMSA_id:000686 D11106 Halococcus morrhuae NRC 16008. prokMSA_id:000688 D63786 Halorubrum trapanicum JCM 8979. prokMSA_id:000689 X00662 Halococcus morrhuae str. LD.3.1 C.B. van Niel ATCC 17082 . prokMSA_id:000687 X72588 Halococcus morrhuae. 1.1.3.4.7.002 OTU 5 seqs prokMSA_id:000685 AB004876 Halococcus saccharolyticus ATCC 49257 . prokMSA_id:000678 AB004877 Halococcus salifodinae str. Blp DSM 8989 . prokMSA_id:000684 AJ131458 Halococcus salifodinae str. BG 2/2. prokMSA_id:000679 AJ238897 Halococcus salifodinae str. Br3. prokMSA_id:073359 Z28387 Halococcus sp. 1.1.3.4.7.003 OTU 2 seqs prokMSA_id:017995 AB074300 Halobacterium sp. NCIMB 718 prokMSA_id:092598 AY341298 Halobacteriales ZAR48 1.1.3.4.7.004 OTU 1 seq prokMSA_id:027020 AF435112 Halococcus tibetense 1.1.3.4.7.005 OTU 1 seq prokMSA_id:066390 AF505673 haloarchaeon clone ZB-A14 1.1.3.4.7.999 poor quality 14 seqs prokMSA_id:064095 AF477932 clone 3a-PML 22% pond prokMSA_id:064089 AF477941 clone 1-PML 31% pond prokMSA_id:000680 AJ245422 Halococcus salifodinae str. N1. prokMSA_id:000681 AJ245423 Halococcus salifodinae str. N1. prokMSA_id:000682 AJ245424 Halococcus salifodinae str. H2. prokMSA_id:000683 AJ245425 Halococcus salifodinae str. H2. prokMSA_id:026231 AJ291418 H1-K9 prokMSA_id:021319 AJ291421 H6-K5 prokMSA_id:046598 AJ291422 H6-K6 prokMSA_id:071268 AJ291425 S3-K9 prokMSA_id:092833 AY341297 Halobacteriales ZAR47 prokMSA_id:092633 AY341299 Halobacteriales ZAR49 prokMSA_id:000677 Z28379 Halococcus sp. str. Br3. prokMSA_id:000676 Z28387 Halococcus salifodinae str. Blp DSM 8989 . 1.1.3.4.8 HAR.VALLISMORTIS_SUBGROUP 120 seqs 1.1.3.4.8.003 OTU 48 seqs prokMSA_id:000702 AB000563 Haloarcula aidinensis str. B-2. prokMSA_id:000704 AB010964 Haloarcula sp. str. 801030/1. prokMSA_id:000695 AB010965 Haloarcula sp. str. 801030/1. prokMSA_id:035152 AB049044 pPCA10.1 prokMSA_id:022898 AB049045 pPCA13.5 prokMSA_id:019666 AB049046 pPCA14.16 prokMSA_id:030500 AB049047 pPCA14.17 prokMSA_id:032359 AB049048 pPCA14.18 prokMSA_id:026900 AB049049 pPCA14.41 prokMSA_id:026826 AB049050 pPCA17.1 prokMSA_id:046679 AB052975 pPACMA-E prokMSA_id:027847 AB052976 pPACMA-F prokMSA_id:033729 AB052977 pPACMA-G prokMSA_id:050694 AB052978 pPACMA-H prokMSA_id:036981 AB052980 pPACMA-J prokMSA_id:040916 AB052981 pPACMA-K prokMSA_id:027356 AB052982 pPACMA-L prokMSA_id:041737 AB052987 pPACMA-S prokMSA_id:040037 AB052988 pPACMA-T prokMSA_id:046921 AB052989 pPACMA-V prokMSA_id:051848 AB052993 pPACMA-U prokMSA_id:027305 AB074561 Halobacterium sp. NCIMB 714 operon prokMSA_id:023836 AB074562 Halobacterium sp. NCIMB 714 rrnB operon prokMSA_id:018654 AB074563 Halobacterium sp. NCIMB 720 operon prokMSA_id:039389 AB074564 Halobacterium sp. NCIMB 720 rrnB operon prokMSA_id:061002 AB090167 Haloarcula hispanica operon prokMSA_id:061001 AB090168 Haloarcula hispanica rrnB operon prokMSA_id:000694 AF034619 Haloarcula marismortui. prokMSA_id:000701 AF034620 Haloarcula marismortui. prokMSA_id:066256 AF506961 Halophilic 2DH35 prokMSA_id:034701 AJ308006 clone FCIII4 prokMSA_id:070419 AJ308010 clone DIE42 prokMSA_id:070196 AJ308011 clone EMF54 prokMSA_id:029919 AJ308015 clone FC2 prokMSA_id:024110 AJ308018 clone EMF9 prokMSA_id:083884 AJ495725 euryarchaeote isolate SB-ARCH9 prokMSA_id:087898 AY277585 Haloarcula altuensis prokMSA_id:097127 AY422462 Haloarcula sp. 2TK2 prokMSA_id:095432 AY422464 Haloarcula sp. 2TK3 prokMSA_id:073483 D14129 Haloarcula sinaiiensis complete prokMSA_id:000699 D14129 Haloarcula sinaiiensis ATCC 33800. prokMSA_id:000698 D14130 Haloarcula sinaiiensis ATCC 33800. prokMSA_id:071110 D14130 Haloarcula sinaiiensis complete prokMSA_id:000703 D50849 Haloarcula argentinensis. prokMSA_id:000709 D50851 Haloarcula vallismortis. prokMSA_id:000708 U17593 Haloarcula vallismortis ATCC 29715 . prokMSA_id:000693 X61688 Haloarcula marismortui str. clone HC8 = operon. prokMSA_id:000700 X61689 Haloarcula marismortui str. clone HH10 =rrnB operon. 1.1.3.4.8.004 OTU 3 seqs prokMSA_id:000696 AF071880 Halobacter utahensis str. AX-2. prokMSA_id:077180 AY164317 haloarchaeon clone DLIA-31 prokMSA_id:084045 AY226373 haloarchaeon clone DBBA-175 1.1.3.4.8.005 OTU 2 seqs prokMSA_id:000691 AB012050 str. MSP8. prokMSA_id:000692 AB012059 str. MSP41. 1.1.3.4.8.006 OTU 2 seqs prokMSA_id:034875 AF211312 Halobacteriales MT16 prokMSA_id:000690 D50850 Haloarcula mukohataei. 1.1.3.4.8.008 OTU 5 seqs prokMSA_id:085089 AB072814 Halosimplex carlsbadense operon genes 23S complete and prokMSA_id:085668 AB072815 Halosimplex carlsbadense rrnB operon genes tRNA-Ala 23S complete and prokMSA_id:084278 AB108677 Halosimplex carlsbadense rrnB operon prokMSA_id:020446 AF320478 Halosimplex carlsbadense small subunit A prokMSA_id:021614 AF320479 Halosimplex carlsbadense small subunit B 1.1.3.4.8.010 OTU 5 seqs prokMSA_id:051102 AF257279 marine euryarchaeote DH148-Y16 prokMSA_id:034968 AF257282 marine euryarchaeote DH148-Y15 prokMSA_id:018167 AF257283 marine euryarchaeote DH148-Y19 prokMSA_id:070273 AF310238 euryarchaeote clone GIV-AN25 prokMSA_id:071571 AF310239 euryarchaeote clone GIV-M70 1.1.3.4.8.011 OTU 4 seqs prokMSA_id:086270 AB072816 Halosimplex carlsbadense rrnC operon genes tRNA-Ala 23S complete and prokMSA_id:083805 AB108676 Halosimplex carlsbadense operon prokMSA_id:044197 AF211314 Halobacteriales MT17 prokMSA_id:047411 AF320480 Halosimplex carlsbadense small subunit C 1.1.3.4.8.012 OTU 1 seq prokMSA_id:064093 AF477936 clone 26-UMH 31% pond 1.1.3.4.8.013 OTU 1 seq prokMSA_id:066346 AF505718 haloarchaeon clone ZB-A68 1.1.3.4.8.014 OTU 1 seq prokMSA_id:066357 AF505707 haloarchaeon clone ZB-A53 1.1.3.4.8.015 OTU 1 seq prokMSA_id:066363 AF505705 haloarchaeon clone ZB-A51 1.1.3.4.8.016 OTU 1 seq prokMSA_id:066392 AF505671 haloarchaeon clone ZB-A12 1.1.3.4.8.017 OTU 1 seq prokMSA_id:072925 AF310236 euryarchaeote clone GIV-DH103 1.1.3.4.8.018 OTU 1 seq prokMSA_id:073223 AJ308017 clone EMF3 1.1.3.4.8.019 OTU 1 seq prokMSA_id:082601 AJ495739 euryarchaeote isolate SB-ARCH27 1.1.3.4.8.020 OTU 2 seqs prokMSA_id:082770 AJ495708 euryarchaeote isolate SA-ARCH18 prokMSA_id:083099 AJ495734 euryarchaeote isolate SB-ARCH20 1.1.3.4.8.021 OTU 1 seq prokMSA_id:083411 AJ495738 euryarchaeote isolate SB-ARCH26 1.1.3.4.8.022 OTU 1 seq prokMSA_id:083845 AY226354 haloarchaeon clone ABBA-96 1.1.3.4.8.023 OTU 1 seq prokMSA_id:084470 AJ495728 euryarchaeote isolate SB-ARCH12 1.1.3.4.8.024 OTU 1 seq prokMSA_id:085776 AJ495726 euryarchaeote isolate SB-ARCH10 1.1.3.4.8.999 poor quality 37 seqs prokMSA_id:051709 AF211315 Halobacteriales MT19 prokMSA_id:050097 AF211316 Halobacteriales MT20 prokMSA_id:035883 AF211317 Halobacteriales MT12 prokMSA_id:023641 AF257281 marine euryarchaeote DH148-Y4 prokMSA_id:018598 AF257284 marine euryarchaeote DH148-Z1 prokMSA_id:049333 AF291165 Mixed culture haloarchaeon CDII-272 prokMSA_id:039436 AF291166 Mixed culture haloarchaeon CDIII-273 prokMSA_id:035431 AF310235 euryarchaeote clone GIV-DH31 prokMSA_id:043944 AF310237 euryarchaeote clone GIV-DH130 prokMSA_id:064122 AF477907 clone 51-UMH 8% pond prokMSA_id:064101 AF477924 clone 15-UMH 22% pond prokMSA_id:056005 AF477938 clone 34-UMH 31% pond prokMSA_id:064087 AF477943 clone 3-PML 31% pond prokMSA_id:066260 AF506955 haloarchaeon HC6 prokMSA_id:066253 AF506959 Halophilic 1DH38 prokMSA_id:031203 AJ270231 Haloarchaeon str. T4.2 strain T4.2 prokMSA_id:028285 AJ270232 Haloarchaeon str. 2Bbr13.2 strain 2Bbr13.2 prokMSA_id:046516 AJ270233 Haloarchaeon str. T3.6 strain T3.6 prokMSA_id:023755 AJ270234 Haloarchaeon str. T3.1 strain T3.1 prokMSA_id:038008 AJ277204 Haloalcalophilium atacamensis isolate ALT-5 prokMSA_id:026961 AJ291415 H1-K2 prokMSA_id:063737 AJ493666 Haloarcula japonica prokMSA_id:086125 AJ495700 euryarchaeote isolate SA-ARCH7 prokMSA_id:084344 AJ495710 euryarchaeote isolate SA-ARCH21 prokMSA_id:086329 AJ495723 euryarchaeote isolate SB-ARCH6 prokMSA_id:057401 AJ517878 clone mHK12.4 prokMSA_id:090536 AJ566777 haloarchaeon clone DGGE band 11 prokMSA_id:090130 AJ566781 haloarchaeon clone DGGE band 15 prokMSA_id:090105 AY288399 euryarchaeote 97D-55-06 prokMSA_id:092142 AY341295 Halobacteriales ZAR41 prokMSA_id:096530 AY422458 Haloarcula sp. 3TK1 prokMSA_id:098437 AY422459 Haloarcula sp. 4TK1 prokMSA_id:097626 AY422465 Haloarcula sp. 4TK3 prokMSA_id:000697 D28872 Haloarcula japonica str. TR-1 JCM 7785 . prokMSA_id:000706 U68537 Haloarcula sp. str. E11. prokMSA_id:000707 U68539 Haloarcula sp. str. E2. prokMSA_id:000705 U68541 Haloarcula hispanica str. Y27 ATCC 33960 . 1.1.3.5 THERMOPLASMALES_AND_RELATIVES 302 seqs 1.1.3.5.1 TPL.ACIDOPHILUM_SUBGROUP 253 seqs 1.1.3.5.1.001 OTU 7 seqs prokMSA_id:000719 AB019740 clone pSSMCA108. prokMSA_id:000731 AB019741 clone pISA12. prokMSA_id:000732 AB019742 clone pISA42. prokMSA_id:035429 AB052983 pPACMA-M prokMSA_id:052688 AB052986 pPACMA-Q prokMSA_id:063651 AF526963 clone pEPR122 prokMSA_id:063649 AF526964 clone pEPR159 1.1.3.5.1.003 OTU 7 seqs prokMSA_id:074688 AF225643 clone AS08-11 prokMSA_id:048711 AF225649 clone AS08-17 prokMSA_id:049712 AF225688 clone AS17-30 prokMSA_id:045554 AJ227929 archaebacteria clone ARR16 prokMSA_id:026892 AJ227932 archaebacteria clone ARR19 prokMSA_id:000727 AJ227959 clone ABS23. prokMSA_id:023326 AY063637 clone RS300-12 1.1.3.5.1.004 OTU 1 seq prokMSA_id:000725 AF146257 clone SCALE-3. 1.1.3.5.1.007 OTU 7 seqs prokMSA_id:062882 AB077225 euryarchaeote clone:KuA15 prokMSA_id:062881 AB077226 euryarchaeote clone:KuA16 prokMSA_id:000722 AF050616 clone WCHD3-02. prokMSA_id:000712 AF050619 clone WCHD3-33. prokMSA_id:033637 AF418931 clone HTA-C7 prokMSA_id:045960 AF424770 33-1 prokMSA_id:092115 AY341275 ZAR106 1.1.3.5.1.008 OTU 10 seqs prokMSA_id:027173 AF339746 Thermoplasma volcanium prokMSA_id:047351 AJ299215 Thermoplasma volcanium strain GSS1 prokMSA_id:068998 AP000996 Thermoplasma volcanium genomic complete section 6/6 prokMSA_id:092375 AY350606 Thermoplasma sp. clone 739-a1 prokMSA_id:093086 AY350607 Thermoplasma sp. clone 739-a6 prokMSA_id:092025 AY350609 Thermoplasma sp. clone 739-a7 prokMSA_id:092226 AY350610 Thermoplasma sp. clone 739-a8 prokMSA_id:000721 M38637 Thermoplasma acidophilum str. 122-1B2. prokMSA_id:047977 NC_002578 Thermoplasma acidophilum complete genome prokMSA_id:046145 NC_002689 Thermoplasma volcanium complete genome 1.1.3.5.1.009 OTU 6 seqs prokMSA_id:052033 AF145441 Ferriplasma acidarmanus prokMSA_id:032944 AF225459 SC42 prokMSA_id:029649 AF232925 MS14 prokMSA_id:065352 AF513710 Ferroplasma sp. MT17 prokMSA_id:000720 AJ224936 Ferromonas metallovorans str. Y. prokMSA_id:085217 AY222042 Ferroplasma acidiphilum strain DR1 1.1.3.5.1.011 OTU 1 seq prokMSA_id:000715 AJ133625 clone KTK 31A. 1.1.3.5.1.012 OTU 1 seq prokMSA_id:000714 AJ133621 clone KTK 4A. 1.1.3.5.1.015 OTU 20 seqs prokMSA_id:000717 AF052945 clone TS10C298. prokMSA_id:000728 AF052947 clone TS235C302. prokMSA_id:019574 AF052952 marine FIN625 prokMSA_id:000729 AF052953 clone FF620. prokMSA_id:000716 AF121989 str. DCM3921. prokMSA_id:000726 AF121997 str. DCM866. prokMSA_id:028117 AF223140 euryarchaeote ME-450_21 prokMSA_id:035669 AF223148 euryarchaeote AM-20A_122 prokMSA_id:017496 AF290525 marine AEGEAN_65 prokMSA_id:017528 AF355816 33-P89A98 prokMSA_id:045739 AF355817 33-P14A98 prokMSA_id:031748 AF355818 33-P42A99 prokMSA_id:022601 AF355820 33-P81A99 prokMSA_id:036903 AF355821 33-FL6A99 prokMSA_id:041698 AF355822 33-FL108A99 prokMSA_id:047465 AF355823 33-FL118A99 prokMSA_id:034120 AF355961 33-P52A99 prokMSA_id:090160 AY288381 euryarchaeote 95B-131-15H prokMSA_id:000713 U78206 clone SB95-72. prokMSA_id:033304 U81547 marine p712-63 1.1.3.5.1.016 OTU 1 seq prokMSA_id:000711 AF050618 clone WCHD3-16. 1.1.3.5.1.017 OTU 1 seq prokMSA_id:000710 X84901 Picrophilus oshimae str. KAW2/2 DSM 9789 . 1.1.3.5.1.018 OTU 2 seqs prokMSA_id:016489 AF225458 SC38 prokMSA_id:071237 AF523941 clone ARCP1-60 1.1.3.5.1.019 OTU 3 seqs prokMSA_id:030521 AF293482 euryarchaeote clone P4b-Ar-10 prokMSA_id:045098 AF293491 euryarchaeote clone P4b-Ar-19 prokMSA_id:016713 AF293504 euryarchaeote clone P4b-Ar-7 1.1.3.5.1.020 OTU 7 seqs prokMSA_id:041358 AF157521 Ar26 prokMSA_id:029379 AF268637 73A prokMSA_id:031891 AF268638 66D prokMSA_id:054629 AF268639 60B prokMSA_id:034934 AF268657 101B prokMSA_id:024419 AF268660 113C prokMSA_id:020250 AF268663 112D 1.1.3.5.1.021 OTU 1 seq prokMSA_id:022294 AF255608 Crenarchaeote SRI-298 1.1.3.5.1.022 OTU 2 seqs prokMSA_id:055743 AJ493122 clone LK11 prokMSA_id:055759 AJ493123 clone LK46 1.1.3.5.1.023 OTU 7 seqs prokMSA_id:023062 AF225457 SC36 prokMSA_id:063280 AF523936 clone ARCP1-21 prokMSA_id:063279 AF523940 clone ARCP1-28 prokMSA_id:058156 AF544219 clone AS1 prokMSA_id:055762 AF544220 clone AS7 prokMSA_id:058151 AF544221 clone AS10 prokMSA_id:058154 AF544224 clone ASL1 1.1.3.5.1.025 OTU 23 seqs prokMSA_id:074993 AB062308 archaeal symbiont PA201 prokMSA_id:076707 AB062309 archaeal symbiont PA202 prokMSA_id:076146 AB062311 archaeal symbiont PA204 prokMSA_id:023240 AF157522 Ar21 prokMSA_id:049223 AF157523 Ar28 prokMSA_id:034068 AF268632 70A prokMSA_id:019041 AF268635 76A prokMSA_id:038995 AF268640 63D prokMSA_id:036396 AF268641 64D prokMSA_id:033335 AF268642 65B prokMSA_id:020943 AF268644 61B prokMSA_id:047331 AF268658 103D prokMSA_id:054468 AF268659 102A prokMSA_id:053894 AF268662 130D prokMSA_id:044248 AF293494 euryarchaeote clone P4b-Ar-25 prokMSA_id:034855 AF293546 euryarchaeote clone P5-Ar-1 prokMSA_id:048615 AF293547 euryarchaeote clone P5-Ar-10 prokMSA_id:032708 AF293548 euryarchaeote clone P5-Ar-11 prokMSA_id:047620 AF293549 euryarchaeote clone P5-Ar-12 prokMSA_id:039608 AF293551 euryarchaeote clone P5-Ar-2 prokMSA_id:029981 AF293578 euryarchaeote clone P3-Ar-9 prokMSA_id:035021 AF293590 euryarchaeote clone P5-Ar2-13 prokMSA_id:000724 U81778 clone vadinCA11. 1.1.3.5.1.029 OTU 8 seqs prokMSA_id:025372 AY015997 marine euryarchaeote dh148-A7 prokMSA_id:032414 AY015998 marine euryarchaeote dh148-A14 prokMSA_id:045230 AY015999 marine euryarchaeote dh148-A18 prokMSA_id:031980 AY016000 marine euryarchaeote dh148-W3 prokMSA_id:032538 AY016001 marine euryarchaeote dh148-W9 prokMSA_id:042138 AY016003 marine euryarchaeote dh148-W15 prokMSA_id:023376 AY016004 marine euryarchaeote dh148-W16 prokMSA_id:080671 AY220726 euryarchaeote clone WCPAP22 1.1.3.5.1.031 OTU 7 seqs prokMSA_id:023572 AF223150 euryarchaeote ME-450_P9 prokMSA_id:041549 AF290526 marine AEGEAN_54 prokMSA_id:046492 AF290534 marine AEGEAN_68 prokMSA_id:034531 AF290535 marine AEGEAN_71 prokMSA_id:054386 AF290536 marine AEGEAN_66 prokMSA_id:026648 AF290537 marine AEGEAN_73 prokMSA_id:083233 AY225434 clone AFRICA_3/13-21 1.1.3.5.1.032 OTU 2 seqs prokMSA_id:033646 U81540 marine p712-3 prokMSA_id:029350 U86462 marine pN1-73 1.1.3.5.1.033 OTU 1 seq prokMSA_id:030004 AF268643 61D 1.1.3.5.1.034 OTU 3 seqs prokMSA_id:031491 AF225456 SC12 prokMSA_id:063281 AF523937 clone ARCP1-27 prokMSA_id:056630 AF544223 clone AS4 1.1.3.5.1.035 OTU 1 seq prokMSA_id:032461 AF325184 clone A10 1.1.3.5.1.037 OTU 5 seqs prokMSA_id:052339 AB034184 rumen M7 prokMSA_id:034273 AB034186 rumen M2 prokMSA_id:044971 AB034187 rumen M1 prokMSA_id:088877 AY315364 rumen clone JRCK35 prokMSA_id:000723 U81773 clone vadinDC79. 1.1.3.5.1.038 OTU 1 seq prokMSA_id:035906 AY016006 marine euryarchaeote dh148-W23 1.1.3.5.1.039 OTU 1 seq prokMSA_id:036228 AF402985 clone archaeap1 1.1.3.5.1.040 OTU 1 seq prokMSA_id:058153 AF544222 clone ASL32 1.1.3.5.1.041 OTU 1 seq prokMSA_id:043384 AF223135 euryarchaeote CA-15_22 1.1.3.5.1.042 OTU 1 seq prokMSA_id:043663 AF257278 marine euryarchaeote DH148-W24 1.1.3.5.1.043 OTU 1 seq prokMSA_id:043890 AF418940 clone HTA-H9 1.1.3.5.1.044 OTU 1 seq prokMSA_id:052811 AF226268 maize root ZmrA19 1.1.3.5.1.045 OTU 1 seq prokMSA_id:053752 AF223141 euryarchaeote ME-450_30 1.1.3.5.1.046 OTU 7 seqs prokMSA_id:063283 AF523938 clone ARCP2-12 prokMSA_id:063282 AF523939 clone ARCP1-30 prokMSA_id:081648 AJ548935 methanogenic clone FenA- prokMSA_id:081489 AJ548936 methanogenic clone FenB- prokMSA_id:081253 AJ548937 methanogenic clone FenG- prokMSA_id:082431 AJ548938 methanogenic clone FenU- prokMSA_id:081985 AJ548939 methanogenic clone FenB1- 1.1.3.5.1.047 OTU 1 seq prokMSA_id:063630 AF526985 clone pEPR157 1.1.3.5.1.048 OTU 3 seqs prokMSA_id:075992 AY164302 clone BLIA-78 prokMSA_id:075770 AY164321 clone ULIA-106 prokMSA_id:085925 AY226369 clone DBBA-160 1.1.3.5.1.049 OTU 1 seq prokMSA_id:076154 AB062320 archaeal symbiont PA203 1.1.3.5.1.050 OTU 1 seq prokMSA_id:078889 AB094542 clone:OHKA4.77 1.1.3.5.1.051 OTU 3 seqs prokMSA_id:082074 AJ548940 methanogenic clone FenC- prokMSA_id:082270 AJ548941 methanogenic clone FenC1- prokMSA_id:081572 AJ548942 methanogenic clone FenC2- 1.1.3.5.1.052 OTU 2 seqs prokMSA_id:089664 AY245466 clone ML23_ANME10 prokMSA_id:090006 AY245467 clone ML23_ANME12 1.1.3.5.1.053 OTU 1 seq prokMSA_id:089835 AY245464 clone ML23_ANME8 1.1.3.5.1.054 OTU 1 seq prokMSA_id:092076 AY341279 ZAR120 1.1.3.5.1.055 OTU 1 seq prokMSA_id:092203 AY345173 clone 624-22 1.1.3.5.1.056 OTU 1 seq prokMSA_id:092399 AY341277 ZAR108 1.1.3.5.1.057 OTU 1 seq prokMSA_id:092567 AY341271 ZAR102 1.1.3.5.1.058 OTU 1 seq prokMSA_id:092703 AY341276 ZAR107 1.1.3.5.1.059 OTU 1 seq prokMSA_id:093172 AB119635 euryarchaeote clone:ESYB79 1.1.3.5.1.060 OTU 2 seqs prokMSA_id:093706 AB119584 euryarchaeote clone:ESYB28 prokMSA_id:093203 AB119585 euryarchaeote clone:ESYB29 1.1.3.5.1.061 OTU 1 seq prokMSA_id:093287 AB119610 euryarchaeote clone:ESYB54 1.1.3.5.1.062 OTU 1 seq prokMSA_id:093413 AY323219 Thermoplasmatales clone AMOS1A_4113_D04 1.1.3.5.1.063 OTU 1 seq prokMSA_id:093442 AY360086 clone EPRA-6 1.1.3.5.1.064 OTU 1 seq prokMSA_id:093599 AB119632 euryarchaeote clone:ESYB76 1.1.3.5.1.065 OTU 1 seq prokMSA_id:093626 AY360087 clone EPRA-12 1.1.3.5.1.066 OTU 1 seq prokMSA_id:093627 AB119579 euryarchaeote clone:ESYB23 1.1.3.5.1.067 OTU 1 seq prokMSA_id:093796 AY323216 Thermoplasmatales clone AMOS4A_452_E11 1.1.3.5.1.068 OTU 1 seq prokMSA_id:093860 AB119634 euryarchaeote clone:ESYB78 1.1.3.5.1.069 OTU 1 seq prokMSA_id:094253 AB119633 euryarchaeote clone:ESYB77 1.1.3.5.1.070 OTU 1 seq prokMSA_id:096317 AY211690 Thermoplasmatales clone GoM GC234 007R 1.1.3.5.1.071 OTU 2 seqs prokMSA_id:096651 AY186066 clone EA1D12 small subunit prokMSA_id:097017 AY186067 clone EA1B12 small subunit 1.1.3.5.1.999 poor quality 72 seqs prokMSA_id:000730 AB024044 clone RS406. prokMSA_id:024461 AB036323 Thermoplasma sp. XT101 prokMSA_id:050701 AB036324 Thermoplasma sp. XT102 prokMSA_id:053764 AB036325 Thermoplasma sp. XT103 prokMSA_id:029198 AB036326 Thermoplasma sp. XT107 prokMSA_id:037699 AB046195 HA11 prokMSA_id:031640 AB056035 OS-10 prokMSA_id:076137 AB062306 archaeal symbiont ST150 prokMSA_id:075418 AB062307 archaeal symbiont PA115 prokMSA_id:076275 AB062310 archaeal symbiont PA122 prokMSA_id:076088 AB062312 archaeal symbiont PA110 prokMSA_id:075700 AB062313 archaeal symbiont ST124 prokMSA_id:076455 AB062314 archaeal symbiont PA120 prokMSA_id:074880 AB062315 archaeal symbiont ST120 prokMSA_id:075711 AB062316 archaeal symbiont ST141 prokMSA_id:075559 AB062317 archaeal symbiont PA121 prokMSA_id:075218 AB062318 archaeal symbiont ST101 prokMSA_id:076071 AB062319 archaeal symbiont ST123 prokMSA_id:076463 AB062321 archaeal symbiont ST119 prokMSA_id:076814 AB062322 archaeal symbiont PA111 prokMSA_id:094185 AB119600 euryarchaeote clone:ESYB44 prokMSA_id:094244 AB119621 euryarchaeote clone:ESYB65 prokMSA_id:044999 AF180684 CRE-FL1a prokMSA_id:020898 AF180685 CRE-FL2a prokMSA_id:049473 AF180693 CRE-FL10a prokMSA_id:036669 AF180714 CRO-12a prokMSA_id:042522 AF218424 euryarchaeote clone A2M21 prokMSA_id:031273 AF218427 euryarchaeote clone A2M30 prokMSA_id:020293 AF218429 euryarchaeote clone A2M45 prokMSA_id:069027 AF224866 clone Car68fc prokMSA_id:038604 AF268634 71A prokMSA_id:020968 AF293521 euryarchaeote clone P5-Ar2-20 prokMSA_id:022445 AF293523 euryarchaeote clone P5-Ar2-24 prokMSA_id:030364 AF293524 euryarchaeote clone P5-Ar2-3 prokMSA_id:032591 AF293539 euryarchaeote clone P5-Ar2-14 prokMSA_id:042350 AF293544 euryarchaeote clone P5-Ar2-28 prokMSA_id:032536 AF355819 33-P110A99 prokMSA_id:021661 AF355960 33-P17A98 prokMSA_id:028691 AF458637 euryarchaeote 03_14e prokMSA_id:048367 AF458638 euryarchaeote 03_27e prokMSA_id:021766 AF458639 euryarchaeote 03_15b prokMSA_id:041660 AF458640 euryarchaeote 03_11b prokMSA_id:064108 AF477920 clone 9-PML 8% pond prokMSA_id:066219 AF509446 Methanobrevibacter smithii clone 27g prokMSA_id:000718 AJ003138 str. Aglo120. prokMSA_id:026858 AJ305063 63-A1 clone 63-A1 prokMSA_id:051331 AJ305083 63-A23 clone 63-A23 prokMSA_id:058524 AJ493120 clone LK32 prokMSA_id:058522 AJ493121 clone LK17 prokMSA_id:075982 AJ517309 DGGE band A1 prokMSA_id:077201 AJ517310 DGGE band A3 prokMSA_id:077108 AJ517311 DGGE band A3 prokMSA_id:076716 AJ517312 DGGE band A8 prokMSA_id:076934 AJ517313 DGGE band A9 prokMSA_id:050604 AY016002 marine euryarchaeote dh148-W10 prokMSA_id:085870 AY092170 clone AF22 prokMSA_id:084322 AY092171 clone AF24 prokMSA_id:082500 AY092172 clone AF97 prokMSA_id:089951 AY288389 euryarchaeote 96C-235-4A prokMSA_id:090741 AY288394 euryarchaeote 97D-131-22A prokMSA_id:089780 AY288397 euryarchaeote 97D-131-02 prokMSA_id:088690 AY288402 euryarchaeote 97D-55-05A prokMSA_id:097462 AY291553 DGGE gel bands 5 and 24 prokMSA_id:095746 AY291554 DGGE gel band 6 prokMSA_id:088380 AY315328 rumen clone JRCJ34 prokMSA_id:091242 AY333323 isolate DGGE gel band Seq4Z0 prokMSA_id:093104 AY339399 Ferroplasmaceae prokMSA_id:092877 AY341272 ZAR103 prokMSA_id:092904 AY341273 ZAR104 prokMSA_id:092927 AY341274 ZAR105 prokMSA_id:092179 AY350608 Thermoplasma sp. clone 739-a3 prokMSA_id:092861 AY350611 Thermoplasma sp. clone 816-a9 1.1.3.5.2 ENV.SBAR16_SUBGROUP 14 seqs 1.1.3.5.2.001 OTU 1 seq prokMSA_id:000734 U11042 coastal surface waters picoplankton from Oregon clone OARB. 1.1.3.5.2.002 OTU 2 seqs prokMSA_id:036345 AF223144 euryarchaeote SB95-35 prokMSA_id:000733 M88077 Santa Barbara Channel clone SBAR16. 1.1.3.5.2.003 OTU 2 seqs prokMSA_id:083855 AB108849 euryarchaeote clone: pCIRA112 prokMSA_id:022411 U78203 euryarchaeote SB95-40 1.1.3.5.2.004 OTU 1 seq prokMSA_id:027739 AF424533 euryarchaeote MERTZ_21CM_5 1.1.3.5.2.005 OTU 1 seq prokMSA_id:048775 AF223149 euryarchaeote AM-20A_123 1.1.3.5.2.006 OTU 1 seq prokMSA_id:086464 AB108847 euryarchaeote clone: pCIRA110 1.1.3.5.2.007 OTU 1 seq prokMSA_id:093519 AY360476 clone BSA1-89m 1.1.3.5.2.999 poor quality 5 seqs prokMSA_id:088553 AY288386 euryarchaeote 96C-131-17 prokMSA_id:090085 AY288390 euryarchaeote 96C-55-10 prokMSA_id:090329 AY288393 euryarchaeote 96C-55-08 prokMSA_id:093343 AY360483 clone BSA4-89m prokMSA_id:093907 AY360484 clone BSA5-98m 1.1.3.5.3 ENV.25-7_SUBGROUP 35 seqs 1.1.3.5.3.001 OTU 6 seqs prokMSA_id:042117 AF223132 euryarchaeote AT-5_P24 prokMSA_id:036383 AF223145 euryarchaeote SB95-48 prokMSA_id:021973 AF290520 marine AEGEAN_55 prokMSA_id:089064 AY288409 euryarchaeote 97E-131-03 prokMSA_id:000739 M88078 Woods Hole clone WHARN. prokMSA_id:000738 U11044 clone ANTARCTIC5. 1.1.3.5.3.002 OTU 8 seqs prokMSA_id:084586 AB108846 euryarchaeote clone: pCIRA109 prokMSA_id:026281 AF223138 euryarchaeote CA-15_32 prokMSA_id:036280 AF223146 euryarchaeote SB95-87 prokMSA_id:048863 AF290517 marine AEGEAN_51 prokMSA_id:044361 AF290519 marine AEGEAN_53 prokMSA_id:044031 AF290538 marine AEGEAN_74 prokMSA_id:083749 AY225431 clone AFRICA_3/2-7 prokMSA_id:000737 U46677 Pele's Vents Archaea clone PVA1. 1.1.3.5.3.003 OTU 4 seqs prokMSA_id:021548 AF290528 marine AEGEAN_58 prokMSA_id:083405 AY225432 clone AFRICA_3/12-19 prokMSA_id:085981 AY225436 clone AFRICA_3/19-17 prokMSA_id:000736 M88074 Santa Barbara Channel clone SBAR1A. 1.1.3.5.3.004 OTU 1 seq prokMSA_id:086096 AB108845 euryarchaeote clone: pCIRA108 1.1.3.5.3.999 poor quality 16 seqs prokMSA_id:023457 AF180692 CRE-FL9a prokMSA_id:036992 AF180704 CRE-PA11a prokMSA_id:051084 AF223131 euryarchaeote AT-5_21 prokMSA_id:054622 AF223136 euryarchaeote CA-15_23 prokMSA_id:043005 AF223147 euryarchaeote DF-5_21 prokMSA_id:089409 AY288380 crenarchaeote 95B-131-13H prokMSA_id:088806 AY288382 euryarchaeote 95B-131-02 prokMSA_id:089266 AY288384 euryarchaeote 96C-131-11 prokMSA_id:090109 AY288388 euryarchaeote 96C-235-15B prokMSA_id:088709 AY288392 euryarchaeote 96C-55-06 prokMSA_id:090359 AY288396 euryarchaeote 97D-131-8A prokMSA_id:089006 AY288398 euryarchaeote 97D-131-03 prokMSA_id:090043 AY288400 euryarchaeote 97D-55-08 prokMSA_id:090608 AY288403 euryarchaeote 97D-235-10 prokMSA_id:089929 AY288404 euryarchaeote 97D-235-20 prokMSA_id:000735 L11976 Pacific Ocean station 25 100m depth clone 1.1.3.6 ARCHAEOGLOBALES 74 seqs 1.1.3.6.009 OTU 1 seq prokMSA_id:000747 AB019759 clone pISA14. 1.1.3.6.010 OTU 3 seqs prokMSA_id:000746 AB019758 clone pISA16. prokMSA_id:072343 AF419624 GBa1r010 prokMSA_id:071793 AF419625 GBa1r013 1.1.3.6.011 OTU 1 seq prokMSA_id:000745 AB019744 clone pMC2A21. 1.1.3.6.012 OTU 2 seqs prokMSA_id:072833 AF419631 GBa2r020 prokMSA_id:072736 AF419632 GBa2r032 1.1.3.6.013 OTU 1 seq prokMSA_id:025153 AY053468 AT425_ArB9 1.1.3.6.014 OTU 10 seqs prokMSA_id:059058 AJ294883 19c-1 clone 19c-1 prokMSA_id:059056 AJ294884 19c-5 clone 19c-5 prokMSA_id:059055 AJ294886 19c-12 clone 19c-12 prokMSA_id:059054 AJ294887 19c-17 clone 19c-17 prokMSA_id:059051 AJ294889 19c-27 clone 19c-27 prokMSA_id:059049 AJ294890 19c-31 clone 19c-31 prokMSA_id:059043 AJ294897 19c-52 clone 19c-52 prokMSA_id:059041 AJ294898 19c-54 clone 19c-54 prokMSA_id:059037 AJ294900 19c-35 clone 19c-35 prokMSA_id:059038 AJ294901 19c-53 clone 19c-53 1.1.3.6.015 OTU 1 seq prokMSA_id:059014 AJ299181 20b-54 clone 20b-54 1.1.3.6.016 OTU 30 seqs prokMSA_id:000754 AB019735 clone pMC2A228. prokMSA_id:084870 AB095131 clone:pCIRA-V prokMSA_id:000744 AE000782 Archaeoglobus fulgidus. prokMSA_id:074691 AE000965 Archaeoglobus fulgidus section 142 of 172 of the complete genome prokMSA_id:000750 AF068814 clone VC2.1 Arc2. prokMSA_id:000751 AF068815 VC2.1 Arc4 complete prokMSA_id:000752 AF068819 VC2.1 Arc8 complete prokMSA_id:000753 AF068824 VC2.1 Arc36 complete prokMSA_id:073240 AF220165 Hyperthermophile str. 234 prokMSA_id:032209 AF220166 Ferroglobus placidus prokMSA_id:021025 AF272841 Archaeoglobus profundus prokMSA_id:033400 AF297529 Archaeoglobus profundus prokMSA_id:047919 AF322392 Archaeoglobus profundus prokMSA_id:071722 AF418181 Archaeoglobus veneficus DSM 11195 prokMSA_id:071750 AF419628 GBa1r015 prokMSA_id:063661 AF526951 clone pEPR796 prokMSA_id:063660 AF526952 clone pEPR821 prokMSA_id:063659 AF526953 clone pEPR222 prokMSA_id:063657 AF526954 clone pEPR870 prokMSA_id:056374 AF526955 clone pEPR617 prokMSA_id:053724 AJ299217 Ferroglobus placidus 23S and ITS1 strain AED II 12 DO prokMSA_id:071588 AJ299218 Archaeoglobus lithotrophicus TF2 23S and ITS1 strain TF2 prokMSA_id:071597 AJ299219 Archaeoglobus profundus 23S and ITS1 strain AV18 prokMSA_id:056766 AY165995 clone FZ2aA25 prokMSA_id:079060 AY181046 clone 1026B270 prokMSA_id:050705 NC_000917 Archaeoglobus fulgidus complete genome prokMSA_id:000743 X05567 Archaeoglobus fulgidus str. VC-16 DSM 4304 . prokMSA_id:000755 Y00275 Archaeoglobus fulgidus str. VC-16. prokMSA_id:000740 Y10011 Archaeoglobus veneficus str. SNP6 DSM 11195 . prokMSA_id:069844 Y10011 Archaeoglobus veneficus 23S and internal transcribed spacer 1 ITS1 1.1.3.6.017 OTU 7 seqs prokMSA_id:070411 AF356640 clone G72_C2 prokMSA_id:068325 AF356641 clone G72_C3 prokMSA_id:068320 AF356644 clone G72_C59 prokMSA_id:068319 AF356646 clone G72_C65 prokMSA_id:030999 AF419626 GBa2r045 prokMSA_id:074040 AF419649 AT_R004 prokMSA_id:071148 AF419654 AT_R022 1.1.3.6.018 OTU 1 seq prokMSA_id:031579 AJ131270 euryarchaeote VAL84 clone VAL84 1.1.3.6.019 OTU 1 seq prokMSA_id:070647 AF354126 isolate SB-17a1A11 1.1.3.6.020 OTU 1 seq prokMSA_id:039716 AF419656 AT_R040 1.1.3.6.021 OTU 1 seq prokMSA_id:046891 AJ347781 SA1 group euryarchaeote clone ST-3K65A 1.1.3.6.022 OTU 1 seq prokMSA_id:071091 AF354137 isolate Eel-36a2G10 1.1.3.6.999 poor quality 13 seqs prokMSA_id:086094 AB096630 clone: SUIYO-A17 prokMSA_id:073133 AF314249 clone ANME 8 prokMSA_id:073830 AF354127 isolate SB-17a1A2 prokMSA_id:072728 AF412943 euryarchaeote clone BSeua2 prokMSA_id:072398 AF419629 a2b037 prokMSA_id:071694 AF419637 C1_R013 prokMSA_id:074027 AF419652 AT_R014 prokMSA_id:044832 AF458645 crenarchaeote 12_01a prokMSA_id:076331 AY164294 clone BLIA-33 prokMSA_id:000741 L25308 Mud Volcano area of Yellowstone NP "Black Pool" hot spring prokMSA_id:000748 U63370 clone pSL23. prokMSA_id:000749 U63371 clone pSL23. prokMSA_id:000742 X99565 Ferroglobus placidus str. AEDII12DO DSM 10642 . 1.1.4 THERMOCOCCALES 237 seqs 1.1.4.1 TC.FUMICOLANS 1 seq 1.1.4.1.999 poor quality 1 seq prokMSA_id:000756 Z70250 Thermococcus fumicolans str. ST557. 1.1.4.2 TC.AGGREGANS 5 seqs 1.1.4.2.001 OTU 1 seq prokMSA_id:000757 Y08384 Thermococcus aggregans str. TY DSM 10597 . 1.1.4.2.002 OTU 3 seqs prokMSA_id:076535 AY164277 candidate division MSBL1 clone ALIA-106 prokMSA_id:076253 AY164298 candidate division MSBL1 clone BLIA-62 prokMSA_id:076023 AY164310 candidate division MSBL1 clone DLIA-144 1.1.4.2.003 OTU 1 seq prokMSA_id:084450 AY226363 candidate division MSBL1 clone BBBA-68 prokMSA_id:086204 AY226378 candidate division MSBL1 clone UBBA-105 1.1.4.3 PC.FURIOSUS_SUBGROUP 21 seqs 1.1.4.3.001 OTU 16 seqs prokMSA_id:049491 AB050246 SAGMA-16 prokMSA_id:084011 AB095114 clone:pCIRA-C prokMSA_id:086433 AB095143 Thermococcus sp. Tc-1-70 prokMSA_id:084479 AB095146 Pyrococcus sp. Tc-2-70 prokMSA_id:000767 AJ012642 Pyrococcus hellenicus str. P3BK17S6-3-a3. prokMSA_id:000760 AJ225071 Pyrococcus abyssi str. ST549. prokMSA_id:000762 AP000001 Pyrococcus horikoshii str. OT3. prokMSA_id:073290 D45214 Pyrococcus horikoshii complete prokMSA_id:000763 D45214 Pyrococcus shinkaii str. OT3. prokMSA_id:000765 D87344 Pyrococcus horikoshii str. JA-1. prokMSA_id:070123 D87344 Pyrococcus horikoshii prokMSA_id:000761 L19921 Pyrococcus abyssi. prokMSA_id:000766 U20163 Pyrococcus furiosus. prokMSA_id:000758 Z54172 Pyrococcus sp. prokMSA_id:000759 Z70246 Pyrococcus abyssi str. ST546. prokMSA_id:000769 Z70247 Pyrococcus sp. str. AL585. 1.1.4.3.002 OTU 2 seqs prokMSA_id:082513 AB095122 clone:pCIRA-L prokMSA_id:082607 AB095137 clone:pCIRA-12 1.1.4.3.999 poor quality 3 seqs prokMSA_id:055227 AY166032 clone FZ2bA11 prokMSA_id:000764 T12785 Pyrococcus furiosus str. Vc1 DSM 3638 . prokMSA_id:000768 X99570 Thermococcus chitonophagus str. GC74 DSM 10152 . 1.1.4.4 TC.CELER_SUBGROUP 210 seqs 1.1.4.4.004 OTU 1 seq prokMSA_id:000785 AB019745 clone pMC2A232. 1.1.4.4.005 OTU 3 seqs prokMSA_id:000778 AB019714 clone pMC2A249. prokMSA_id:000779 AB019715 clone pMC2A14. prokMSA_id:000780 AB019716 clone pSSMCA1. 1.1.4.4.006 OTU 1 seq prokMSA_id:000775 AB019751 clone pISA1. 1.1.4.4.007 OTU 1 seq prokMSA_id:000774 AB019747 clone pMC2A17. 1.1.4.4.008 OTU 1 seq prokMSA_id:000773 AB019746 clone pMC2A211. 1.1.4.4.009 OTU 1 seq prokMSA_id:000772 AB019719 clone pMC2A209. 1.1.4.4.010 OTU 1 seq prokMSA_id:000771 AB019717 clone pMCA256. 1.1.4.4.011 OTU 1 seq prokMSA_id:068957 AB052992 pPACMA-Y 1.1.4.4.012 OTU 2 seqs prokMSA_id:056603 AY166025 clone FZ2bA113 prokMSA_id:056746 AY166027 clone FZ2bA165 1.1.4.4.013 OTU 1 seq prokMSA_id:024840 AB050211 SAGMA-G 1.1.4.4.014 OTU 3 seqs prokMSA_id:025307 AB050242 SAGMA-12 prokMSA_id:030623 AB050243 SAGMA-13 prokMSA_id:046700 AB050245 SAGMA-15 1.1.4.4.015 OTU 2 seqs prokMSA_id:034194 AB050213 SAGMA-I prokMSA_id:036097 AB050223 SAGMA-R 1.1.4.4.016 OTU 1 seq prokMSA_id:034595 AF224831 clone Car42fc 1.1.4.4.017 OTU 1 seq prokMSA_id:071469 AB015280 euryarchaeote strain JTA69 1.1.4.4.018 OTU 1 seq prokMSA_id:043167 AB052984 pPACMA-N 1.1.4.4.019 OTU 1 seq prokMSA_id:046965 AF355813 33-P44A00 1.1.4.4.020 OTU 6 seqs prokMSA_id:078482 AB094530 clone:OHKA2.13 prokMSA_id:078464 AB094535 clone:OHKA4.4 prokMSA_id:078695 AB094545 clone:OHKA5.5 prokMSA_id:063121 AY093452 clone MA-C1-2 prokMSA_id:063119 AY093453 clone MA-C1-4 prokMSA_id:063118 AY093454 clone MA-C1-50 1.1.4.4.021 OTU 1 seq prokMSA_id:063617 AF527005 clone pEPR598 1.1.4.4.023 OTU 129 seqs prokMSA_id:027325 AB010893 Thermococcus siculi prokMSA_id:000787 AB016298 Thermococcus sp. str. B1001. prokMSA_id:034911 AB017920 Desulfurococcus sp. SY prokMSA_id:000807 AB019239 Palaeococcus ferriphilus str. DMJ. prokMSA_id:033992 AB027014 Thermococcus sp. CKU-1 prokMSA_id:042114 AB033616 Thermococcus sp. CNR-5 prokMSA_id:048496 AB033618 Thermococcus sp. CNR-5 prokMSA_id:047094 AB033619 Thermococcus sp. CKU-199 prokMSA_id:021722 AB033620 Thermococcus sp. CYA prokMSA_id:036654 AB033621 Thermococcus sp. CAR-80 prokMSA_id:018384 AB033622 Thermococcus sp. CMI prokMSA_id:027129 AB033623 Thermococcus litoralis prokMSA_id:035877 AB033624 Thermococcus sp. KS-1 prokMSA_id:046372 AB033625 Thermococcus peptonophilus prokMSA_id:036144 AB049037 pPCA7.8 prokMSA_id:025163 AB049038 pPCA7.21 prokMSA_id:050857 AB049039 pPCA7.30 prokMSA_id:025609 AB049040 pPCA8.3 prokMSA_id:035419 AB049041 pPCA12.6 prokMSA_id:025941 AB049042 pPCA13.4 prokMSA_id:050678 AB049043 pPCA15.21 prokMSA_id:043623 AB052972 pPACMA-A prokMSA_id:050865 AB052973 pPACMA-B prokMSA_id:029471 AB052974 pPACMA-C prokMSA_id:030578 AB055120 Thermococcus acidaminovorans strain:DSM 11906 prokMSA_id:048696 AB055121 Thermococcus alcaliphilus strain:DSM 10322 prokMSA_id:037193 AB055122 Thermococcus fumicolans strain:JCM 10128 prokMSA_id:030964 AB055123 Thermococcus gorgonarius strain:JCM 10552 prokMSA_id:021914 AB055124 Thermococcus pacificus strain:JCM 10553 prokMSA_id:048762 AB055125 Thermococcus peptonophilus strain:JCM 9653 prokMSA_id:033045 AB055126 Thermococcus siculi strain:DSM 12349 prokMSA_id:019786 AB055127 Thermococcus waiotapuensis strain:JCM 10985 prokMSA_id:044360 AB055128 Thermococcus fumicolans strain:ST557 prokMSA_id:058500 AB072724 clone:pHAuA-9 prokMSA_id:085180 AB095113 clone:pCIRA-B prokMSA_id:085368 AB095115 clone:pCIRA-E prokMSA_id:084372 AB095129 clone:pCIRA-T prokMSA_id:084281 AB095144 Thermococcus sp. Tc-1-85 prokMSA_id:085138 AB095145 Thermococcus sp. Tc-1-95 prokMSA_id:085128 AB095147 Thermococcus sp. Tc-2-85 prokMSA_id:084211 AB095148 Thermococcus sp. Tc-2-95 prokMSA_id:086564 AB095149 Thermococcus sp. Tc-365-70 prokMSA_id:082866 AB095150 Thermococcus sp. Tc-365-85 prokMSA_id:084286 AB095152 Thermococcus sp. Tc-4-70 prokMSA_id:085603 AB095153 Thermococcus sp. Tc-4-85 prokMSA_id:083906 AB095154 Thermococcus sp. Tc-I-70 prokMSA_id:084765 AB095156 Thermococcus sp. Tc-S-70 prokMSA_id:086332 AB095157 Thermococcus sp. Tc-S-85 prokMSA_id:090070 AB107767 Thermococcus sp. TS1 prokMSA_id:089817 AB107768 Thermococcus sp. TS2 prokMSA_id:088209 AB107769 Thermococcus sp. TS3 prokMSA_id:000811 AF017455 Thermococcus Rt3 str. Rt3. prokMSA_id:000799 AF068813 VC2.1 Arc1 complete prokMSA_id:000800 AF068816 VC2.1 Arc5 complete prokMSA_id:000801 AF068818 VC2.1 Arc7 complete prokMSA_id:000802 AF068821 VC2.1 Arc16 complete prokMSA_id:000803 AF068823 VC2.1 Arc35 complete prokMSA_id:000793 AF069725 str. Gorda1. prokMSA_id:000794 AF069726 Thermococcus Gorda2 str. Gorda2. prokMSA_id:000795 AF069727 Thermococcus Gorda3 str. Gorda3. prokMSA_id:000796 AF069728 Thermococcus Gorda4 str. Gorda4. prokMSA_id:000797 AF069729 Thermococcus Gorda5 str. Gorda5. prokMSA_id:000798 AF069730 Thermococcus Gorda6 str. Gorda6. prokMSA_id:000810 AF098975 Thermococcus waimanguensis str. Wai21.S1. prokMSA_id:000812 AF134982 Thermococcus waiotapuense str. WT1. prokMSA_id:024207 AF220303 o18a6 prokMSA_id:031343 AF220323 O14F1 prokMSA_id:041531 AF220329 O18C3 prokMSA_id:071477 AF220335 O23C2 prokMSA_id:017092 AF289217 Thermococcus sp. TK1 isolate TK1 prokMSA_id:046432 AF333041 Thermococcus sp. SN531 prokMSA_id:018003 AF350364 Thermococcus sp. 9N3 prokMSA_id:041407 AF350366 Thermococcus sp. CX2 prokMSA_id:034928 AF350367 Thermococcus sp. CX3 prokMSA_id:042758 AF350368 Thermococcus sp. CX4 prokMSA_id:038763 AF350369 Thermococcus sp. CL1 prokMSA_id:068329 AF356631 clone G26_C48 prokMSA_id:073477 AF364945 clone clH32arc prokMSA_id:028699 AF402989 Thermococcus sp. clone archaeap24 prokMSA_id:069804 AF419641 C1_R034 prokMSA_id:073209 AF479012 Thermococcus marinus prokMSA_id:018391 AF479013 Thermococcus radiophilus prokMSA_id:043730 AF479014 Thermococcus gammatolerans prokMSA_id:063628 AF526992 clone pEPR743 prokMSA_id:063626 AF526993 clone pEPR642 prokMSA_id:072710 AF526994 clone pEPR190 prokMSA_id:056486 AF526995 clone pEPR817 prokMSA_id:063623 AF526996 clone pEPR890 prokMSA_id:000792 AJ012643 Thermococcus aegeaicus str. P5BK17S6-3-b2. prokMSA_id:000791 AJ012644 Thermococcus sp. strain P6 prokMSA_id:046577 AJ238992 Thermococcus sibiricus prokMSA_id:038459 AJ291807 Thermococcus acidaminovorans strain DSM 11906 prokMSA_id:048581 AJ291808 Thermococcus siculi strain DSM 12349 prokMSA_id:031437 AJ291809 Thermococcus gorgonarius strain DSM 10395 prokMSA_id:032192 AJ291810 Thermococcus peptonophilus strain DSM 10343 prokMSA_id:034206 AJ291811 Thermococcus pacificus strain DSM 10394 prokMSA_id:074471 AJ291812 Thermococcus alcaliphilus strain DSM 10322 prokMSA_id:048271 AJ298870 Thermococcus siculi strain DSM 12349 prokMSA_id:032059 AJ298871 Thermococcus peptonophilus strain DSM 10343 prokMSA_id:041114 AJ298872 Thermococcus alcaliphilus strain DSM 10322 prokMSA_id:059027 AJ299169 20b-22 clone 20b-22 prokMSA_id:059005 AJ299192 20c-22 clone 20c-22 prokMSA_id:058650 AJ419869 Thermococcus sp. MV1099 23S and ITS 1 prokMSA_id:079315 AJ431231 Thermococcus sp. BHI80a28 strain BHI80a28 prokMSA_id:079104 AJ431233 Thermococcus sp. Dex80a71 strain Dex80a71 prokMSA_id:054189 AY017170 Thermococcus sp. MZ1 ; internal transcribed spacer complete ; and 23S prokMSA_id:054119 AY017171 Thermococcus sp. MZ2 ; internal transcribed spacer complete ; and 23S prokMSA_id:054651 AY017174 Thermococcus sp. MZ5 ; internal transcribed spacer complete ; and 23S prokMSA_id:055014 AY017175 Thermococcus sp. MZ6 ; internal transcribed spacer complete ; and 23S prokMSA_id:054583 AY017180 Thermococcus sp. MZ12 ; internal transcribed spacer complete ; and 23S prokMSA_id:054665 AY017181 Thermococcus sp. MZ13 ; internal transcribed spacer complete ; and 23S prokMSA_id:058788 AY134472 Palaeococcus helgesonii ; -23S intergenic spacer complete ; and 23S prokMSA_id:000782 D37982 Thermococcus peptonophilus str. OG-1 JCM 9653 . prokMSA_id:000815 D37983 Thermococcus peptonophilus str. SM-2 JCM 9654. prokMSA_id:000813 D37983 Thermococcus peptonophilus str. SM-2. prokMSA_id:071185 D38650 Thermococcus kodakaraensis genes 23S complete and sequences prokMSA_id:000818 D38650 Pyrococcus sp. str. KOD1. prokMSA_id:033569 E17110 Thermococcus sp. B-1001 prokMSA_id:049071 E30964 of Thermococcus sp prokMSA_id:000784 M21529 Thermococcus celer str. VU 13 DSM 2476 . prokMSA_id:000790 U76534 Thermococcus zilligii str. AN1. prokMSA_id:000789 U76535 Thermococcus barossii. prokMSA_id:000770 U82237 Thermococcus barophilus str. MP. prokMSA_id:000776 U82238 str. ES1. prokMSA_id:000819 Y08385 Thermococcus guaymasensis str. TYS JCM 10136 . prokMSA_id:000777 Z70244 Thermococcus hydrothermalis str. AL662. prokMSA_id:000786 Z75218 Thermococcus mexicalis str. GY 869. prokMSA_id:000809 Z75233 Thermococcus profundus str. DT5432 DSM 9503 . prokMSA_id:000814 Z75240 Thermococcus stetteri str. K-3 DSM 5262 . 1.1.4.4.024 OTU 1 seq prokMSA_id:063663 AF526949 clone pEPR847 1.1.4.4.025 OTU 1 seq prokMSA_id:074714 AF199375 Euryarchaeote J3.25-8 1.1.4.4.026 OTU 1 seq prokMSA_id:082675 AY226367 candidate division MSBL1 clone DBBA-136 1.1.4.4.027 OTU 1 seq prokMSA_id:084803 AY226353 candidate division MSBL1 clone ABBA-76 1.1.4.4.028 OTU 1 seq prokMSA_id:085079 AY226357 candidate division MSBL1 clone BBBA-108 1.1.4.4.029 OTU 1 seq prokMSA_id:085232 AY226362 candidate division MSBL1 clone BBBA-46 1.1.4.4.030 OTU 1 seq prokMSA_id:085951 AY226368 candidate division MSBL1 clone DBBA-155 1.1.4.4.031 OTU 1 seq prokMSA_id:094889 AJ583385 clone S15A-MN136A 1.1.4.4.999 poor quality 43 seqs prokMSA_id:051721 AB027015 Thermococcus sp. CKU-199 prokMSA_id:093748 AB119596 euryarchaeote clone:ESYB40 prokMSA_id:093384 AB119613 euryarchaeote clone:ESYB57 prokMSA_id:071037 AF220341 Thermococcus sp. vp197 prokMSA_id:035254 AF224779 clone Car106b prokMSA_id:046603 AF224855 clone Car127c prokMSA_id:042902 AF265620 isolate A4 prokMSA_id:035666 AF350363 Thermococcus sp. 9N2 prokMSA_id:040080 AF364946 clone clH61arc prokMSA_id:071385 AF419640 C1_R032 prokMSA_id:036760 AF424538 euryarchaeote MERTZ_21CM_334B prokMSA_id:071843 AJ296597 DGGE band PSARC-2 prokMSA_id:056735 AY166016 clone FZ2bA58 prokMSA_id:056737 AY166019 clone FZ2bA69 prokMSA_id:078460 AY182110 clone FZ3bA56 prokMSA_id:079068 AY182129 clone FZ3aA31 prokMSA_id:078715 AY182131 clone FZ3bA104 prokMSA_id:078909 AY182135 clone FZ3aA26 prokMSA_id:091298 AY333322 isolate DGGE gel band Seq3Z0 prokMSA_id:091730 AY333332 isolate DGGE gel band SEQ13Z1 prokMSA_id:091929 AY333338 isolate DGGE gel band SEQ20S6 prokMSA_id:092575 AY350595 Thermococcus sp. clone 711-a2 prokMSA_id:092466 AY350596 Thermococcus sp. clone 518b-a1 prokMSA_id:092697 AY350597 Thermococcus sp. clone 518b-a2 prokMSA_id:093161 AY350598 Thermococcus sp. clone 520a-a1 prokMSA_id:092094 AY350599 Thermococcus sp. clone 520a-a2 prokMSA_id:092251 AY350600 Thermococcus sp. clone 527-a1 prokMSA_id:092634 AY350601 Thermococcus sp. clone 527-a2 prokMSA_id:092594 AY350602 Thermococcus sp. clone 527-a3 prokMSA_id:092042 AY350603 Thermococcus sp. clone 527-a4 prokMSA_id:092465 AY350604 Thermococcus sp. clone 711-a1 prokMSA_id:092237 AY350605 Thermococcus sp. clone 711-a3 prokMSA_id:000820 NONE Thermococcus profundus str. DT5432 . prokMSA_id:000817 NONE Thermococcus profundus. prokMSA_id:000816 NONE Thermococcus stetteri. prokMSA_id:000783 NONE Thermococcus celer. prokMSA_id:000808 Y15935 Thermococcus acidaminovorans str. AEDII10. prokMSA_id:000788 Y16226 Thermococcus gorgonarius str. W-2. prokMSA_id:000821 Y16227 Thermococcus pacificus str. P-4 DSM 10394 . prokMSA_id:000805 Z70245 Thermococcus sp. str. GE3. prokMSA_id:000806 Z70249 Thermococcus sp. str. ST554. prokMSA_id:000781 Z70251 Thermococcus sp. str. GE20. prokMSA_id:000804 Z70252 Thermococcus litoralis. 1.1.5 METHANOPYRALES 9 seqs 1.1.5.001 OTU 8 seqs prokMSA_id:062897 AE010349 Methanopyrus kandleri AV19 section 48 of 157 of the complete genome prokMSA_id:063658 AF526956 clone pEPR829 prokMSA_id:063656 AF526957 clone pEPR811 prokMSA_id:063655 AF526958 clone pEPR865 prokMSA_id:063624 AF526997 clone pEPR140 prokMSA_id:063622 AF526998 clone pEPR708 prokMSA_id:000822 M59932 Methanopyrus kandleri str. av19 DSM 6324 . prokMSA_id:064372 NC_003551 Methanopyrus kandleri AV19 complete genome 1.1.5.999 poor quality 1 seq prokMSA_id:083065 AB095127 clone:pCIRA-R 1.2 CRENARCHAEOTA 1800 seqs 1.2.1 THERMOPHILIC_CRENARCHAEOTA 655 seqs 1.2.1.1 ENVIRONMENTAL_CLONE_PJP41 6 seqs 1.2.1.1.001 OTU 1 seq prokMSA_id:055151 AY166111 clone FZ2bA108 1.2.1.1.999 poor quality 5 seqs prokMSA_id:035453 AB046181 GA32 prokMSA_id:052057 AB046184 GA55 prokMSA_id:020093 AB056057 OS-32 prokMSA_id:020642 AF180695 CRE-PA2a prokMSA_id:000823 L25301 Mud Volcano area of Yellowstone NP "Black Pool" hot spring 1.2.1.2 ENVIRONMENTAL_CLONE_PJP33 2 seqs 1.2.1.2.001 OTU 1 seq prokMSA_id:000824 L25300 Mud Volcano area of Yellowstone NP "Black Pool" hot spring 1.2.1.2.002 OTU 1 seq prokMSA_id:055149 AY166113 clone FZ2bA221 1.2.1.3 TMF.PENDENS_SUBGROUP 272 seqs 1.2.1.3.001 OTU 1 seq prokMSA_id:000854 U59984 clone pGrfB286. 1.2.1.3.002 OTU 1 seq prokMSA_id:000851 AF004344 clone BBA4. 1.2.1.3.003 OTU 2 seqs prokMSA_id:000852 AF005753 clone Arc.2. prokMSA_id:047871 AF005764 Arc.168 1.2.1.3.004 OTU 1 seq prokMSA_id:000849 AB007307 clone pUWA2. 1.2.1.3.005 OTU 1 seq prokMSA_id:000848 AF119129 unnamed organism. 1.2.1.3.006 OTU 1 seq prokMSA_id:000847 AF118662 clone pBRKC88. 1.2.1.3.007 OTU 1 seq prokMSA_id:000839 U63342 clone pSL50. 1.2.1.3.008 OTU 1 seq prokMSA_id:000838 U63341 clone pSL4. 1.2.1.3.009 OTU 1 seq prokMSA_id:000837 U63339 clone pSL17. 1.2.1.3.010 OTU 1 seq prokMSA_id:000836 U63338 clone pJP96. 1.2.1.3.012 OTU 5 seqs prokMSA_id:000832 AF005752 clone Arc.1. prokMSA_id:042364 AF005760 Arc.98 prokMSA_id:030652 AF005761 Arc.118 prokMSA_id:000834 AF005762 clone Arc.119. prokMSA_id:069953 AF005762 Arc.119 1.2.1.3.013 OTU 1 seq prokMSA_id:000833 AF005757 clone Arc.22. 1.2.1.3.015 OTU 1 seq prokMSA_id:000830 AB019721 clone pMC2A308. 1.2.1.3.018 OTU 1 seq prokMSA_id:000828 AF118656 clone pBRKC86. 1.2.1.3.019 OTU 3 seqs prokMSA_id:070948 AF176345 crenarchaeote pBA1 prokMSA_id:049927 AF255605 Thermofiliaceae str. SRI-370 prokMSA_id:000826 X14835 Thermofilum pendens str. Hvv3 DSM 2475 . 1.2.1.3.020 OTU 1 seq prokMSA_id:018084 AF325182 clone A6 1.2.1.3.021 OTU 1 seq prokMSA_id:072965 AF419648 AT_R003 1.2.1.3.023 OTU 3 seqs prokMSA_id:000831 AF004345 clone BBA6. prokMSA_id:023119 AF424519 crenarchaeote MERTZ_2CM_269 prokMSA_id:031024 AF424527 crenarchaeote MERTZ_21CM_232 1.2.1.3.024 OTU 1 seq prokMSA_id:068897 AB050212 SAGMA-H 1.2.1.3.025 OTU 9 seqs prokMSA_id:037402 AF391989 thermal soil clone YNPFFA1 prokMSA_id:034207 AF391990 thermal soil clone YNPFFA4 prokMSA_id:041999 AF391991 thermal soil clone YNPFFA23 prokMSA_id:036629 AF391992 thermal soil clone YNPFFA85 prokMSA_id:045996 AF391993 thermal soil clone YNPFFA108 prokMSA_id:079197 AY187880 clone BB7 prokMSA_id:085598 AY236855 clone W6Arch34 prokMSA_id:085926 AY236856 clone W6Arch39 prokMSA_id:083118 AY236857 clone W6Arch8 1.2.1.3.026 OTU 1 seq prokMSA_id:040869 AF328210 clone KS73 1.2.1.3.027 OTU 1 seq prokMSA_id:043314 AF325181 clone A1 1.2.1.3.029 OTU 83 seqs prokMSA_id:078430 AB094554 clone:OHKA9.8 prokMSA_id:074602 AF225608 clone AS01-06 prokMSA_id:049997 AF225617 clone AS01-15 prokMSA_id:032186 AF225623 clone AS01-21 prokMSA_id:029151 AF225637 clone AS08-05 prokMSA_id:025331 AF225646 clone AS08-14 prokMSA_id:029363 AF225655 clone AS08-25 prokMSA_id:038407 AF268633 71C prokMSA_id:034280 AF268645 65C prokMSA_id:016899 AF268661 142C prokMSA_id:046662 AF268664 145B prokMSA_id:017122 AF276442 clone RFLP 15A prokMSA_id:034190 AF293484 crenarchaeote clone P4b-Ar-12 prokMSA_id:019751 AF293485 crenarchaeote clone P4b-Ar-13 prokMSA_id:036813 AF293495 euryarchaeote clone P4b-Ar-26 prokMSA_id:038421 AF293576 crenarchaeote clone P3-Ar-5 prokMSA_id:072768 AF293591 crenarchaeote clone Cren21-1 prokMSA_id:016571 AF293592 crenarchaeote clone Cren21-11 prokMSA_id:035007 AF293593 crenarchaeote clone Cren21-12 prokMSA_id:052587 AF293594 crenarchaeote clone Cren21-13 prokMSA_id:018266 AF293595 crenarchaeote clone Cren21-14 prokMSA_id:073811 AF293596 crenarchaeote clone Cren21-15 prokMSA_id:023923 AF293597 crenarchaeote clone Cren21-16 prokMSA_id:020258 AF293598 crenarchaeote clone Cren21-17 prokMSA_id:029104 AF293599 crenarchaeote clone Cren21-18 prokMSA_id:032949 AF293602 crenarchaeote clone Cren21-26 prokMSA_id:028655 AF293603 crenarchaeote clone Cren21-27 prokMSA_id:044811 AF293604 crenarchaeote clone Cren21-28 prokMSA_id:042708 AF293605 crenarchaeote clone Cren21-29 prokMSA_id:073170 AF293606 crenarchaeote clone Cren21-36 prokMSA_id:051830 AF293607 crenarchaeote clone Cren21-37 prokMSA_id:029748 AF293608 crenarchaeote clone Cren21-40 prokMSA_id:046134 AF293609 crenarchaeote clone Cren21-5 prokMSA_id:041601 AF293611 crenarchaeote clone Cren21-8 prokMSA_id:040032 AF293612 crenarchaeote clone Cren21-9 prokMSA_id:035432 AF293613 crenarchaeote clone Cren-10 prokMSA_id:016530 AF418925 clone HTA-B10 prokMSA_id:045742 AF424768 72-1 prokMSA_id:043667 AF424775 62-2 prokMSA_id:074737 AJ227925 archaebacteria clone ARR11 prokMSA_id:021949 AJ227941 archaebacteria clone ARR29 prokMSA_id:044058 AJ227946 archaebacteria clone ARR35 prokMSA_id:042529 AJ227948 archaebacteria clone ARR38 prokMSA_id:047961 AJ227956 archaebacteria clone ABS13 prokMSA_id:033077 AJ227957 archaebacteria clone ABS16 prokMSA_id:023608 AJ236454 ST1-3 prokMSA_id:022563 AJ236455 ST1-4 prokMSA_id:027948 AJ236507 S15-26 prokMSA_id:048983 AJ244284 anaerobic methanogenic ET1-8 prokMSA_id:019513 AJ244286 anaerobic methanogenic ET1-10 prokMSA_id:026558 AJ310454 RSS50-4 clone RSS50-4 prokMSA_id:077010 AJ535125 crenarchaeote clone JG36-GR-12 prokMSA_id:075362 AJ535133 crenarchaeote clone JG36-GR-124 prokMSA_id:081841 AJ548933 methanogenic clone FenO1- prokMSA_id:082394 AJ548934 methanogenic clone FenO- prokMSA_id:094323 AJ583394 clone S15A-MN68A prokMSA_id:094885 AJ583395 clone S15A-MN125A prokMSA_id:094376 AJ583396 clone S15A-MN92A prokMSA_id:094642 AJ583397 clone S15A-MN95A prokMSA_id:095027 AJ583413 clone GR-WP33-A4 prokMSA_id:094812 AJ583414 clone GR-WP33-A11 prokMSA_id:094760 AJ583424 clone GR-WP33-A157 prokMSA_id:019662 AY063659 clone RS0-4 prokMSA_id:031563 AY063664 clone RS0-9 prokMSA_id:027317 AY063666 clone RS0-11 prokMSA_id:028459 AY063668 clone RS0-13 prokMSA_id:056717 AY082455 crenarchaeote clone 44a-A1-4 prokMSA_id:079608 AY161253 clone SSADM_AC6 prokMSA_id:080146 AY161254 clone SSADM_AD2 prokMSA_id:079761 AY161257 clone SSADM_AE7 prokMSA_id:079960 AY161258 clone SSADM_AE9 prokMSA_id:085607 AY239506 clone CARB_SS1 prokMSA_id:086019 AY239511 clone CARB_ASS6 prokMSA_id:086252 AY239513 clone CARB_ASS8 prokMSA_id:086301 AY239518 clone CARB_AR1_2 prokMSA_id:086028 AY239521 clone CARB_AR1_5 prokMSA_id:082545 AY239525 clone CARB_AR2_1 prokMSA_id:086122 AY239531 clone CARB_AR2_7 prokMSA_id:085866 AY278094 crenarchaeote clone GRU7 prokMSA_id:092815 AY341329 ZAR67 prokMSA_id:092190 AY341331 ZAR70 prokMSA_id:000835 U59986 clone pGrfC26. prokMSA_id:000829 U81774 clone vadinDC69. 1.2.1.3.030 OTU 1 seq prokMSA_id:044205 AF328199 clone KS60 1.2.1.3.031 OTU 1 seq prokMSA_id:047265 AJ236519 S30-1 1.2.1.3.032 OTU 1 seq prokMSA_id:053714 AF325186 clone A14 1.2.1.3.033 OTU 1 seq prokMSA_id:073046 AF419633 GBa2r048 1.2.1.3.034 OTU 2 seqs prokMSA_id:078475 AY181048 clone 1026B52 prokMSA_id:078566 AY181051 clone 1026B222 1.2.1.3.035 OTU 1 seq prokMSA_id:078520 AY182124 clone FZ3aA130 1.2.1.3.036 OTU 1 seq prokMSA_id:078581 AB094541 clone:OHKA4.59 1.2.1.3.037 OTU 1 seq prokMSA_id:078739 AB094546 clone:OHKA5.23 1.2.1.3.038 OTU 1 seq prokMSA_id:078778 AB094519 clone:OHKA1.9 1.2.1.3.039 OTU 1 seq prokMSA_id:092461 AY354121 clone pIR3AC09 1.2.1.3.040 OTU 1 seq prokMSA_id:094619 AJ583406 clone S15A-MN161A 1.2.1.3.999 poor quality 138 seqs prokMSA_id:038333 AB046178 GA02 prokMSA_id:044076 AB046187 HA01 prokMSA_id:026760 AB046188 HA03 prokMSA_id:042658 AB046189 HA04 prokMSA_id:040160 AB046193 HA09 prokMSA_id:017061 AB046198 HA48 prokMSA_id:040163 AB055984 WSB-2 prokMSA_id:042699 AB055993 WSB-11 prokMSA_id:032476 AB055999 WSB-17 prokMSA_id:029265 AB056002 WSB-20 prokMSA_id:017880 AB056005 AM-2 prokMSA_id:025516 AB056007 AM-4 prokMSA_id:018975 AB056008 AM-5 prokMSA_id:021337 AB056009 AM-6 prokMSA_id:034527 AB056012 AM-9 prokMSA_id:034696 AB056014 AM-11 prokMSA_id:027014 AB056018 AM-15 prokMSA_id:051105 AB056020 AM-17 prokMSA_id:019703 AB056024 AM-21 prokMSA_id:026460 AB056025 AM-22 prokMSA_id:051806 AB056029 OS-4 prokMSA_id:018337 AB056031 OS-6 prokMSA_id:039478 AB056039 OS-14 prokMSA_id:018552 AB056044 OS-19 prokMSA_id:047485 AB056046 OS-21 prokMSA_id:035754 AB056051 OS-26 prokMSA_id:025772 AB056052 OS-27 prokMSA_id:017342 AB056054 OS-29 prokMSA_id:040385 AB056058 OS-33 prokMSA_id:019057 AB075803 prokMSA_id:022233 AB079480 clone:TOYO-19-Bm prokMSA_id:018777 AB079481 clone:TOYO-20-Dm prokMSA_id:078610 AB094522 clone:OHKA1.16 prokMSA_id:096937 AB107838 clone:SJ-5 prokMSA_id:097080 AB107840 clone:SJ-7 prokMSA_id:018411 AF005765 Arc.171 prokMSA_id:000827 AF118657 clone pBRKC135. prokMSA_id:026847 AF218422 crenarchaeote clone A2M11 prokMSA_id:028527 AF218425 crenarchaeote clone A2M27 prokMSA_id:019903 AF218428 crenarchaeote clone A2M32 prokMSA_id:028310 AF255607 Thermofiliaceae str. SRI-325 prokMSA_id:047002 AF311363 Crenarchaeote OlA-444 prokMSA_id:042330 AF361208 crenarchaeote clone SUBT-10 prokMSA_id:050698 AF361209 crenarchaeote clone SUBT-12 prokMSA_id:071209 AF361214 crenarchaeote clone SUBT-11 prokMSA_id:073608 AF419653 AT_R021 prokMSA_id:024008 AF448452 IUA69 prokMSA_id:032723 AF458642 crenarchaeote 12_47f prokMSA_id:036588 AF458643 crenarchaeote 12_45f prokMSA_id:024758 AF458646 crenarchaeote 12_02a prokMSA_id:064107 AF477921 clone 10-PML 8% pond prokMSA_id:063271 AF523943 clone ARCP1-11 prokMSA_id:059414 AF540857 clone DP10u1 prokMSA_id:033283 AJ236530 S30-22 prokMSA_id:059002 AJ299194 20c-25 clone 20c-25 prokMSA_id:044922 AJ305066 63-A5 clone 63-A5 prokMSA_id:033854 AJ305067 63-A6 clone 63-A6 prokMSA_id:032644 AJ305068 63-A7 clone 63-A7 prokMSA_id:023940 AJ305069 63-A8 clone 63-A8 prokMSA_id:048107 AJ305073 63-A12 clone 63-A12 prokMSA_id:016742 AJ305074 63-A14 clone 63-A14 prokMSA_id:027119 AJ305075 63-A15 clone 63-A15 prokMSA_id:095117 AJ583403 clone S15A-MN69A prokMSA_id:094757 AJ583404 clone S15A-MN101A prokMSA_id:094905 AJ583405 clone S15A-MN155A prokMSA_id:022541 AY063667 clone RS0-12 prokMSA_id:044172 AY063706 clone RS500-21 prokMSA_id:083224 AY092146 clone AF87 prokMSA_id:083474 AY092147 clone AF9 prokMSA_id:080531 AY161252 clone SSADM_AC5 prokMSA_id:077186 AY164295 crenarchaeote clone BLIA-43 prokMSA_id:080085 AY191892 clone BG2 prokMSA_id:086237 AY228683 clone SSA2 prokMSA_id:086169 AY228691 clone SSA10 prokMSA_id:085144 AY239508 clone CARB_ASS3 prokMSA_id:083627 AY239514 clone CARB_ASS9 prokMSA_id:085179 AY239526 clone CARB_AR2_2 prokMSA_id:086325 AY278080 crenarchaeote clone STE3 prokMSA_id:084091 AY278090 crenarchaeote clone GRU24 prokMSA_id:096195 AY291545 DGGE gel band 11 prokMSA_id:095327 AY291546 DGGE gel band 12 prokMSA_id:098201 AY291547 DGGE gel band 13 prokMSA_id:097100 AY291560 DGGE gel band 25 prokMSA_id:096182 AY291561 DGGE gel band 26 prokMSA_id:090995 AY333324 isolate DGGE gel band Seq5S1 prokMSA_id:091083 AY333325 isolate DGGE gel band Seq6S1 prokMSA_id:091196 AY333326 isolate DGGE gel band SEQ7S1 prokMSA_id:091070 AY333327 isolate DGGE gel band SEQ8S1 prokMSA_id:091436 AY333328 isolate DGGE gel band SEQ9S1 prokMSA_id:091489 AY333329 isolate DGGE gel band SEQ10S1 prokMSA_id:091121 AY333333 isolate DGGE gel band SEQ14S6 prokMSA_id:091402 AY333335 isolate DGGE gel band SEQ17S6 prokMSA_id:091758 AY333339 isolate DGGE gel band SEQ21Z6 prokMSA_id:091446 AY333340 isolate DGGE gel band SEQ23Z6 prokMSA_id:091246 AY333345 isolate DGGE gel band SEQ28S7 prokMSA_id:091831 AY333346 isolate DGGE gel band SEQ30S7 prokMSA_id:091985 AY333347 isolate DGGE gel band SEQ32S7 prokMSA_id:091154 AY333348 isolate DGGE gel band SEQ33S7 prokMSA_id:091388 AY333350 isolate DGGE gel band SEQ35S7 prokMSA_id:091786 AY333351 isolate DGGE gel band SEQ36Z7 prokMSA_id:091677 AY333352 isolate DGGE gel band SEQ37Z7 prokMSA_id:091211 AY333353 isolate DGGE gel band SEQ38Z7 prokMSA_id:091117 AY333355 isolate DGGE gel band SEQ40Z7 prokMSA_id:091975 AY333356 isolate DGGE gel band SEQ43S8 prokMSA_id:091244 AY333357 isolate DGGE gel band SEQ44S8 prokMSA_id:091405 AY333358 isolate DGGE gel band SEQ47S8 prokMSA_id:091718 AY333359 isolate DGGE gel band SEQ48S8 prokMSA_id:092557 AY345168 crenarchaeote clone 621-35 prokMSA_id:092746 AY345174 clone 624-65 prokMSA_id:092921 AY345184 clone 626-32 prokMSA_id:092259 AY354113 clone pIR3AH02 prokMSA_id:092260 AY354118 clone pIR3AB04 prokMSA_id:000867 L25304 Mud Volcano area of Yellowstone NP "Black Pool" hot spring prokMSA_id:000825 L25306 Mud Volcano area of Yellowstone NP "Black Pool" hot spring prokMSA_id:000853 U59983 clone pGrfB22. prokMSA_id:000855 U59985 clone pGrfB98. prokMSA_id:000856 U59988 clone pLemB108. prokMSA_id:000857 U59989 clone pLemB126. prokMSA_id:000858 U59990 clone pLemB137. prokMSA_id:000859 U59991 clone pLemB21. prokMSA_id:000860 U59992 clone pLemB22. prokMSA_id:000861 U59993 clone pLemB235. prokMSA_id:000862 U59994 clone pLemB322. prokMSA_id:000863 U59995 clone pLemB389. prokMSA_id:000864 U59996 clone pLemB390. prokMSA_id:000865 U59997 clone pLemB418. prokMSA_id:000866 U59998 clone pLemB62. prokMSA_id:000840 U63344 clone pSL78. prokMSA_id:000841 U63351 clone pSL1. prokMSA_id:000842 U63357 clone pSL6. prokMSA_id:039959 U63358 crenarchaeote 5' prokMSA_id:000843 U63362 clone pSL14. prokMSA_id:000844 U63363 clone pSL14. prokMSA_id:000845 U63367 clone pSL109. prokMSA_id:000846 U63369 clone pSL77. prokMSA_id:018914 U77569 crenarchaeote prokMSA_id:000850 X99557 Thermofilum librum str. V24N. prokMSA_id:016774 X99564 Crenarchaeotal sp. isolate S10TFL 1.2.1.4 PYB.ISLANDICUM_SUBGROUP 46 seqs 1.2.1.4.001 OTU 1 seq prokMSA_id:000877 AB005296 Thermocladium modestius str. IC-125 JCM 10088 . 1.2.1.4.002 OTU 14 seqs prokMSA_id:000875 AB007310 clone pOWA103. prokMSA_id:000876 AB007313 clone pOWA20. prokMSA_id:000873 AB009618 Thermoproteus neutrophilus JCM 9278 . prokMSA_id:044220 AB029339 Pyrobaculum oguniense prokMSA_id:034186 AB063647 Pyrobaculum organotrophum strain:JCM 9190 prokMSA_id:078804 AB078332 Pyrobaculum calidifontis complete prokMSA_id:063979 AB087402 Pyrobaculum oguniense genes homing endonuclease I-PogI and complete cds prokMSA_id:054372 AE009843 Pyrobaculum aerophilum strain IM2 section 98 of 201 of the complete genome prokMSA_id:026139 AF176346 crenarchaeote pBA2 prokMSA_id:020435 AJ277124 Pyrobaculum arsenaticum strain PZ6 prokMSA_id:052477 AJ277125 Pyrobaculum sp. WIJ3 prokMSA_id:000868 L07511 Pyrobaculum islandicum str. geo3. prokMSA_id:064505 NC_003364 Pyrobaculum aerophilum complete genome prokMSA_id:000870 X81886 Pyrobaculum neutrophilum str. NZ1. 1.2.1.4.003 OTU 1 seq prokMSA_id:000872 M35966 Thermoproteus tenax. 1.2.1.4.004 OTU 1 seq prokMSA_id:016428 AB013926 Caldivirga maquilingensis 1.2.1.4.005 OTU 8 seqs prokMSA_id:018315 AB063630 Vulcanisaeta distributa strain:IC-017 prokMSA_id:030926 AB063634 Vulcanisaeta distributa strain:IC-032 prokMSA_id:019003 AB063639 Vulcanisaeta distributa strain:IC-065 prokMSA_id:040703 AB063640 Vulcanisaeta distributa strain:IC-124 prokMSA_id:023618 AB063641 Vulcanisaeta distributa strain:IC-135 prokMSA_id:073455 AB063642 Vulcanisaeta distributa strain:IC-136 prokMSA_id:023289 AB063645 Vulcanisaeta souniana strain:IC-059 prokMSA_id:023083 AB063646 Vulcanisaeta souniana strain:IC-060 1.2.1.4.999 poor quality 21 seqs prokMSA_id:046193 AB009616 Thermoproteus sp. IC-033 prokMSA_id:050207 AB009617 Thermoproteus sp. IC-061 prokMSA_id:041397 AB027539 pHGPA1 homing endonuclease prokMSA_id:043974 AB027540 pHGPA13 homing endonuclease prokMSA_id:041394 AB063631 Vulcanisaeta distributa strain:IC-019 prokMSA_id:027751 AB063632 Vulcanisaeta distributa strain:IC-029 prokMSA_id:045499 AB063633 Vulcanisaeta distributa strain:IC-030 prokMSA_id:038823 AB063635 Vulcanisaeta distributa strain:IC-051 prokMSA_id:016312 AB063636 Vulcanisaeta distributa strain:IC-052 prokMSA_id:042441 AB063637 Vulcanisaeta distributa strain:IC-058 prokMSA_id:072845 AB063638 Vulcanisaeta distributa strain:IC-064 prokMSA_id:047601 AB063643 Vulcanisaeta distributa strain:IC-140 prokMSA_id:071811 AB063644 Vulcanisaeta distributa strain:IC-141 prokMSA_id:058585 AB081846 Thermoproteus sp. IC-061 genes putative homing endonuclease and complete cds prokMSA_id:033471 AF311359 Crenarchaeote OlA-6 prokMSA_id:023955 AF311364 Crenarchaeote OlA-592 prokMSA_id:079730 AY191886 Thermocladium sp. clone B88 prokMSA_id:092470 AY350589 Crenarchaeote 768-28 prokMSA_id:000869 L07510 Pyrobaculum aerophilum str. IM2 DSM 7523 . prokMSA_id:000871 L25309 Mud Volcano area of Yellowstone NP "Black Pool" hot spring prokMSA_id:000874 U63364 clone pSL60. 1.2.1.5 PYRODICTIALES 244 seqs 1.2.1.5.1 PYR.OCCULTUM_SUBGROUP 86 seqs 1.2.1.5.1.001 OTU 1 seq prokMSA_id:055225 AY166036 clone FZ2bA53 1.2.1.5.1.002 OTU 4 seqs prokMSA_id:055175 AY166087 clone FZ2bA230 prokMSA_id:055172 AY166090 clone FZ2bA41 prokMSA_id:055160 AY166102 clone FZ2bA12 prokMSA_id:055148 AY166114 clone FZ2bA5 1.2.1.5.1.003 OTU 1 seq prokMSA_id:000889 AB019733 clone pISA7. 1.2.1.5.1.004 OTU 1 seq prokMSA_id:000888 AB019732 clone pISA9. 1.2.1.5.1.006 OTU 6 seqs prokMSA_id:000884 AB007304 clone pOWA19. prokMSA_id:000885 AB007305 clone pOWA54. prokMSA_id:000886 AB007306 clone pUWA43. prokMSA_id:070637 AF419639 C1_R025 prokMSA_id:063629 AF526986 clone pEPR153 prokMSA_id:063619 AF527002 clone pEPR152 1.2.1.5.1.007 OTU 1 seq prokMSA_id:000883 AB007303 clone pOWA133. 1.2.1.5.1.008 OTU 1 seq prokMSA_id:000880 U63345 clone pSL123. 1.2.1.5.1.009 OTU 1 seq prokMSA_id:055163 AY166099 clone FZ2bA214 1.2.1.5.1.010 OTU 1 seq prokMSA_id:055162 AY166100 clone FZ2bA61 1.2.1.5.1.011 OTU 2 seqs prokMSA_id:055152 AY166110 clone FZ2bA4 prokMSA_id:055144 AY166117 clone FZ2aA56 1.2.1.5.1.012 OTU 1 seq prokMSA_id:017296 AF361212 crenarchaeote clone SUBT-13 1.2.1.5.1.016 OTU 25 seqs prokMSA_id:059089 AJ299151 20a-6 clone 20a-6 prokMSA_id:059087 AJ299152 20a-7 clone 20a-7 prokMSA_id:059044 AJ299155 20a-12 clone 20a-12 prokMSA_id:059036 AJ299159 20a-28 clone 20a-28 prokMSA_id:059033 AJ299160 20b-1 clone 20b-1 prokMSA_id:059035 AJ299161 20b-4 clone 20b-4 prokMSA_id:059034 AJ299162 20b-7 clone 20b-7 prokMSA_id:059032 AJ299164 20b-10 clone 20b-10 prokMSA_id:059031 AJ299165 20b-14 clone 20b-14 prokMSA_id:059028 AJ299167 20b-16 clone 20b-16 prokMSA_id:059026 AJ299168 20b-18 clone 20b-18 prokMSA_id:059024 AJ299170 20b-25 clone 20b-25 prokMSA_id:059025 AJ299172 20b-27 clone 20b-27 prokMSA_id:059022 AJ299174 20b-30 clone 20b-30 prokMSA_id:059020 AJ299175 20b-31 clone 20b-31 prokMSA_id:059018 AJ299177 20b-39 clone 20b-39 prokMSA_id:059016 AJ299180 20b-53 clone 20b-53 prokMSA_id:056178 AJ299182 20c-3 clone 20c-3 prokMSA_id:059015 AJ299184 20c-8 clone 20c-8 prokMSA_id:059008 AJ299189 20c-18 clone 20c-18 prokMSA_id:059004 AJ299190 20c-19 clone 20c-19 prokMSA_id:059003 AJ299191 20c-20 clone 20c-20 prokMSA_id:059001 AJ299193 20c-23 clone 20c-23 prokMSA_id:059007 AJ299196 20c-37 clone 20c-37 prokMSA_id:058993 AJ299202 20c-54 clone 20c-54 1.2.1.5.1.017 OTU 3 seqs prokMSA_id:059080 AJ294859 19b-17 clone 19b-17 prokMSA_id:055828 AJ294865 19b-34 clone 19b-34 prokMSA_id:055359 AY093451 clone MA-C1-5 1.2.1.5.1.018 OTU 9 seqs prokMSA_id:000887 AB007311 clone pOWA27. prokMSA_id:023461 AB052979 pPACMA-I prokMSA_id:023664 AB052991 pPACMA-X prokMSA_id:085638 AB095130 clone:pCIRA-U prokMSA_id:055328 AF526973 clone pEPR940 prokMSA_id:063641 AF526974 clone pEPR263 prokMSA_id:063621 AF527001 clone pEPR943 prokMSA_id:059017 AJ299178 20b-40 clone 20b-40 prokMSA_id:000879 M21087 Pyrodictium occultum str. PL-19 DSM 2709 . 1.2.1.5.1.019 OTU 1 seq prokMSA_id:031015 AF402990 clone archaeap28 1.2.1.5.1.020 OTU 1 seq prokMSA_id:055147 AY166115 clone FZ2aA55 1.2.1.5.1.021 OTU 1 seq prokMSA_id:077902 AJ458436 nanoarchaeote clone OP-9 1.2.1.5.1.022 OTU 1 seq prokMSA_id:078579 AB094548 clone:OHKA5.34 1.2.1.5.1.023 OTU 1 seq prokMSA_id:078602 AB094540 clone:OHKA4.47 1.2.1.5.1.024 OTU 1 seq prokMSA_id:078823 AB094547 clone:OHKA5.24 1.2.1.5.1.025 OTU 1 seq prokMSA_id:078843 AY182122 clone FZ3aA1 1.2.1.5.1.026 OTU 1 seq prokMSA_id:079058 AB094536 clone:OHKA4.12 1.2.1.5.1.027 OTU 1 seq prokMSA_id:083399 AY216935 Desulfurococcales 121 1.2.1.5.1.028 OTU 1 seq prokMSA_id:086571 AB095124 clone:pCIRA-N 1.2.1.5.1.999 poor quality 19 seqs prokMSA_id:059383 AF458634 crenarchaeote 03_02a prokMSA_id:059384 AF458636 crenarchaeote 03_01a prokMSA_id:059092 AJ299148 20a-1 clone 20a-1 prokMSA_id:083675 AJ495704 crenarchaeote isolate SA-ARCH12 prokMSA_id:084936 AJ495717 crenarchaeote isolate SA-ARCH28 prokMSA_id:055176 AY166086 clone FZ2bA218 prokMSA_id:055174 AY166088 clone FZ2bA215 prokMSA_id:055173 AY166089 clone FZ2bA70 prokMSA_id:055171 AY166091 clone FZ2bA68 prokMSA_id:055159 AY166103 clone FZ2bA54 prokMSA_id:000890 U59969 clone pGrfA15. prokMSA_id:000891 U59982 clone pGrfA9. prokMSA_id:000881 U63347 clone pSL44. prokMSA_id:036310 U63348 crenarchaeote 5' prokMSA_id:000882 U63349 clone pSL69. prokMSA_id:000892 X99553 Hyperthermus butylicus DSM 5456 . prokMSA_id:000878 X99555 Pyrolobus fumari str. 1A DSM 11204. prokMSA_id:000893 X99559 Pyrodictium abyssi DSM 6158 . prokMSA_id:027102 X99563 Crenarchaeotal sp. isolate CB9 1.2.1.5.2 AP.PERNIX_SUBGROUP 92 seqs 1.2.1.5.2.001 OTU 23 seqs prokMSA_id:000911 AB007312 clone pOWA114. prokMSA_id:000909 AB008745 Aeropyrum pernix str. K1. prokMSA_id:000913 AB019552 Aeropyrum pernix genes ITS 23S and complete strain:OH2 prokMSA_id:053957 AB019553 Aeropyrum pernix genes ITS 23S and complete strain:TB1 prokMSA_id:053178 AB019554 Aeropyrum pernix genes 23S and ITS region and complete strain:TB7 prokMSA_id:054532 AB078015 Aeropyrum pernix genes 23S and ITS region complete strain:OH1 prokMSA_id:053481 AB078016 Aeropyrum pernix genes 23S and ITS region complete strain:OH3 prokMSA_id:054521 AB078017 Aeropyrum pernix genes 23S and ITS region complete strain:TB2 prokMSA_id:053505 AB078018 Aeropyrum pernix genes 23S and ITS region complete strain:TB3 prokMSA_id:054113 AB078019 Aeropyrum pernix genes 23S and ITS region complete strain:TB4 prokMSA_id:054225 AB078020 Aeropyrum pernix genes 23S and ITS region complete strain:TB5 prokMSA_id:054963 AB078021 Aeropyrum pernix genes 23S and ITS region complete strain:TB6 prokMSA_id:054367 AB078022 Aeropyrum pernix genes 23S and ITS region complete strain:TB8 prokMSA_id:085330 AB109559 Aeropyrum camini prokMSA_id:063640 AF526975 clone pEPR156 prokMSA_id:063639 AF526976 clone pEPR990 prokMSA_id:063638 AF526977 clone pEPR985 prokMSA_id:063637 AF526978 clone pEPR908 prokMSA_id:055974 AF526979 clone pEPR928 prokMSA_id:060310 AP000062 Aeropyrum pernix genomic section 5/7 prokMSA_id:073985 D83259 Aeropyrum pernix prokMSA_id:000894 D83259 Aeropyrum pernix str. K1. prokMSA_id:053138 NC_000854 Aeropyrum pernix complete genome 1.2.1.5.2.002 OTU 8 seqs prokMSA_id:000901 AJ131312 clone VAL11. prokMSA_id:000902 AJ131315 clone VAL81. prokMSA_id:000903 AJ131317 clone VAL20. prokMSA_id:000904 AJ131318 clone VAL42. prokMSA_id:000905 AJ131319 clone VAL48. prokMSA_id:000906 AJ131320 clone VAL29. prokMSA_id:000907 AJ131321 clone VAL18. prokMSA_id:000908 AJ131322 clone VAL76. 1.2.1.5.2.003 OTU 13 seqs prokMSA_id:000900 AB015273 str. JTB173. prokMSA_id:078841 AB094513 clone:OHKA1.1 prokMSA_id:096662 AB107832 clone:MK-9 prokMSA_id:059072 AJ294869 19b-39 clone 19b-39 prokMSA_id:059063 AJ294882 19a-29 clone 19a-29 prokMSA_id:059045 AJ294896 19c-51 clone 19c-51 prokMSA_id:063132 AY093446 clone MA-A1-1 prokMSA_id:063131 AY093447 clone MA-B1-3 prokMSA_id:063125 AY093449 clone MA-B1-5 prokMSA_id:063124 AY093450 clone MA-C1-3 prokMSA_id:092345 AY341334 ZAR73 prokMSA_id:092195 AY345169 clone 621-48 prokMSA_id:092418 AY345176 clone 624-73 1.2.1.5.2.004 OTU 1 seq prokMSA_id:000899 AF005758 clone Arc.43. 1.2.1.5.2.006 OTU 1 seq prokMSA_id:028917 AF268636 73D 1.2.1.5.2.008 OTU 10 seqs prokMSA_id:073901 AF225581 clone AS00-11 prokMSA_id:000895 AJ131311 clone VAL114. prokMSA_id:000896 AJ131313 clone VAL159. prokMSA_id:000897 AJ131314 clone VAL96. prokMSA_id:000898 AJ131316 clone VAL151. prokMSA_id:051319 AJ236482 S15-1 prokMSA_id:094547 AJ583398 clone S15A-MN171A prokMSA_id:051059 AY063714 clone RS500-29 prokMSA_id:085120 AY278084 crenarchaeote clone GRU17 prokMSA_id:086607 AY278093 crenarchaeote clone GRU5 1.2.1.5.2.009 OTU 1 seq prokMSA_id:072647 AF361213 Desulfurococcus sp. clone SUBT-9 1.2.1.5.2.010 OTU 1 seq prokMSA_id:078319 AB087499 Caldisphaera lagunensis 1.2.1.5.2.011 OTU 1 seq prokMSA_id:078500 AB094537 clone:OHKA4.18 1.2.1.5.2.012 OTU 1 seq prokMSA_id:078523 AB094560 clone:OHKA15.20 1.2.1.5.2.013 OTU 1 seq prokMSA_id:078628 AB094557 clone:OHKA12.82 1.2.1.5.2.014 OTU 1 seq prokMSA_id:084949 AY278082 crenarchaeote clone GRU15 1.2.1.5.2.015 OTU 1 seq prokMSA_id:085918 AY278088 crenarchaeote clone GRU21 1.2.1.5.2.016 OTU 1 seq prokMSA_id:092058 AY341333 ZAR72 1.2.1.5.2.019 OTU 3 seqs prokMSA_id:094723 AJ583421 clone GR-WP33-A149 prokMSA_id:092754 AY341328 ZAR65 prokMSA_id:092758 AY341330 ZAR68 1.2.1.5.2.999 poor quality 25 seqs prokMSA_id:054761 AF180700 CRE-PA7a prokMSA_id:053103 AF180703 CRE-PA10a prokMSA_id:024292 AF180719 CR-PA6a prokMSA_id:029861 AF180723 CR-PA12a prokMSA_id:029650 AF293610 crenarchaeote clone Cren21-6 prokMSA_id:084946 AJ495703 crenarchaeote isolate SA-ARCH11 prokMSA_id:080626 AY191881 Stygiolobus sp. clone B19 prokMSA_id:079796 AY191890 Caldococcus sp. clone B185 prokMSA_id:091354 AY333337 isolate DGGE gel band SEQ19S6 prokMSA_id:091875 AY333342 isolate DGGE gel band SEQ25Z6 prokMSA_id:091049 AY333349 isolate DGGE gel band SEQ34S7 prokMSA_id:092248 AY341327 ZAR64 prokMSA_id:092174 AY350582 Acidilobus sp. clone 404-a1 prokMSA_id:092940 AY350584 Acidilobus sp. clone 405-a3 prokMSA_id:092382 AY350585 Acidilobus sp. 124-87 prokMSA_id:092863 AY350586 Acidilobus sp. 345-15 prokMSA_id:092105 AY350587 Acidilobus sp. 405-16 prokMSA_id:093016 AY350588 Acidilobus sp. 722-67 prokMSA_id:000910 D85038 Caldococcus noboribetus str. NC12. prokMSA_id:018303 U77568 crenarchaeote prokMSA_id:024314 U77571 crenarchaeote prokMSA_id:074635 U77572 crenarchaeote prokMSA_id:023330 U77574 crenarchaeote prokMSA_id:000912 X99554 Thermodiscus maritimus str. S2. prokMSA_id:000914 Y07784 Stetteria hydrogenophila str. 4ABC. 1.2.1.5.3 STH.MARINUS_SUBGROUP 39 seqs 1.2.1.5.3.001 OTU 3 seqs prokMSA_id:000922 AF005755 clone Arc.4. prokMSA_id:035833 AF005763 Arc.148 prokMSA_id:027534 AF005767 Arc.212 1.2.1.5.3.004 OTU 1 seq prokMSA_id:000919 U63340 clone pSL22. 1.2.1.5.3.005 OTU 1 seq prokMSA_id:000918 AF004343 clone BBA2. 1.2.1.5.3.006 OTU 3 seqs prokMSA_id:078634 AB094544 clone:OHKA4.94 prokMSA_id:000917 AF119137 unnamed organism. prokMSA_id:051748 AF424525 crenarchaeote MERTZ_21CM_122 1.2.1.5.3.009 OTU 22 seqs prokMSA_id:083450 AB095128 clone:pCIRA-S prokMSA_id:063648 AF526966 clone pEPR710 prokMSA_id:063647 AF526967 clone pEPR805 prokMSA_id:063645 AF526968 clone pEPR863 prokMSA_id:063646 AF526969 clone pEPR954 prokMSA_id:063644 AF526970 clone pEPR936 prokMSA_id:063642 AF526971 clone pEPR206 prokMSA_id:063643 AF526972 clone pEPR210 prokMSA_id:063620 AF526999 clone pEPR733 prokMSA_id:055868 AF527000 clone pEPR269 prokMSA_id:000920 AJ012645 Staphylothermus achaiicus str. P8BK20S6-10-b1. prokMSA_id:016514 AJ271794 Ignicoccus pacificus strain LPC33 prokMSA_id:059091 AJ299149 20a-2 clone 20a-2 prokMSA_id:059090 AJ299150 20a-3 clone 20a-3 prokMSA_id:059088 AJ299154 20a-10 clone 20a-10 prokMSA_id:056004 AJ299156 20a-15 clone 20a-15 prokMSA_id:059042 AJ299157 20a-17 clone 20a-17 prokMSA_id:059040 AJ299158 20a-25 clone 20a-25 prokMSA_id:059029 AJ299166 20b-15 clone 20b-15 prokMSA_id:066762 AJ318042 Ignicoccus sp. Kin4-I strain Kin4-I prokMSA_id:000916 X99560 Staphylothermus marinus str. F1 DSM 3639 . prokMSA_id:000921 X99562 Igneococcus islandicus str. Ko18. 1.2.1.5.3.999 poor quality 9 seqs prokMSA_id:040298 AB075802 prokMSA_id:063130 AB081530 clone:YSg prokMSA_id:078901 AB094524 clone:OHKA1.27 prokMSA_id:095709 AB107835 clone:SJ-2 prokMSA_id:098440 AB107837 clone:SJ-4 prokMSA_id:059402 AF540869 clone ME24-2 prokMSA_id:091009 AY333331 isolate DGGE gel band SEQ12Z1 prokMSA_id:091358 AY333343 isolate DGGE gel band SEQ26Z6 prokMSA_id:000915 Y07963 Stetteria hydrogenophila str. 4ABC. 1.2.1.5.4 DCO.MOBILIS_SUBGROUP 27 seqs 1.2.1.5.4.001 OTU 1 seq prokMSA_id:000937 AB007308 clone pUWA36. 1.2.1.5.4.003 OTU 2 seqs prokMSA_id:000934 AF005754 clone Arc.3. prokMSA_id:000935 AF005759 clone Arc.75. 1.2.1.5.4.005 OTU 6 seqs prokMSA_id:022921 AF255606 Desulfurococcaceae str. SRI-465 prokMSA_id:023984 AF411230 Desulfurococcus sp. SEA prokMSA_id:000930 M36474 Desulfurococcus mobilis. prokMSA_id:000929 X06188 Desulfurococcus mobilis DSM 2161. prokMSA_id:000936 X98064 Sulfophobococcus zilligii str. K1 DSM 11193 . prokMSA_id:000932 X99561 unnamed organism. 1.2.1.5.4.006 OTU 1 seq prokMSA_id:000931 AF005756 clone Arc.9. 1.2.1.5.4.007 OTU 1 seq prokMSA_id:050397 AF325183 clone A9 1.2.1.5.4.008 OTU 1 seq prokMSA_id:051122 AF325185 clone A13 1.2.1.5.4.009 OTU 1 seq prokMSA_id:066763 AJ318041 Nanoarchaeum equitans Kin4-M strain Kin4-M 1.2.1.5.4.010 OTU 1 seq prokMSA_id:078624 AB094517 clone:OHKA1.5 1.2.1.5.4.999 poor quality 13 seqs prokMSA_id:074608 AB075804 prokMSA_id:050800 AF176344 crenarchaeote pBA3 prokMSA_id:073260 AF250331 Desulfurococcus amylolyticus prokMSA_id:084894 AY264344 Desulfurococcus fermentans strain Z-1312 prokMSA_id:091705 AY333334 isolate DGGE gel band SEQ16S6 prokMSA_id:091906 AY333341 isolate DGGE gel band SEQ24Z6 prokMSA_id:000927 L25302 Mud Volcano area of Yellowstone NP "Black Pool" hot spring prokMSA_id:000928 L25307 Mud Volcano area of Yellowstone NP "Black Pool" hot spring prokMSA_id:000924 U63355 clone pSL79. prokMSA_id:000925 U63360 clone pSL91. prokMSA_id:000926 U63361 clone pSL91. prokMSA_id:000923 X99556 Thermosphaera aggregans str. M11TL DSM 11486 . prokMSA_id:000933 X99558 Desulfurococcus saccharovorans str. V24K. 1.2.1.6 SULFOLOBUS_SUBGROUP_I 30 seqs 1.2.1.6.1 SUL.SOLFATARICUS_SUBGROUP 27 seqs 1.2.1.6.1.003 OTU 22 seqs prokMSA_id:074215 AF425652 Sulfolobus sp. AMP12/99 prokMSA_id:073229 AF425653 Sulfolobus sp. RC6/00 prokMSA_id:074206 AF425654 Sulfolobus sp. NGB6/00 prokMSA_id:070345 AF425656 Sulfolobus sp. FF5/00 prokMSA_id:071769 AF425657 Sulfolobus sp. MV2/99 prokMSA_id:071652 AF425659 Sulfolobus sp. NL8/00 prokMSA_id:069935 AF425660 Sulfolobus sp. NGB23/00 prokMSA_id:059549 AY135637 Sulfolobus sp. RT8-4 prokMSA_id:092813 AY247893 Sulfolobus sp. I2 prokMSA_id:092884 AY247894 Sulfolobus sp. I7 prokMSA_id:092457 AY247895 Sulfolobus sp. M14A prokMSA_id:092378 AY247896 Sulfolobus sp. U3D prokMSA_id:092401 AY247897 Sulfolobus sp. B6A prokMSA_id:092554 AY247898 Sulfolobus sp. B6B prokMSA_id:093061 AY247899 Sulfolobus sp. N15A prokMSA_id:092579 AY247900 Sulfolobus sp. N15B prokMSA_id:092332 AY247901 Sulfolobus sp. C51 prokMSA_id:000942 D26490 Sulfolobus solfataricus str. P1 IFO 15331 . prokMSA_id:000940 M32504 Sulfolobus shibatae str. B12 DSM 5389 . prokMSA_id:054467 NC_002754 Sulfolobus solfataricus complete genome prokMSA_id:000941 X90478 Sulfolobus solfataricus str. P1 DSM 1616 . prokMSA_id:000938 X90483 Sulfolobus solfataricus str. Ron 12/III. 1.2.1.6.1.999 poor quality 5 seqs prokMSA_id:071859 AF425658 Sulfolobus sp. CH7/99 prokMSA_id:070113 AF425663 Sulfolobus sp. RCSC1/01 prokMSA_id:000944 L36990 Sulfolobus solfataricus str. 98/2. prokMSA_id:000943 L36991 Sulfolobus solfataricus str. P2 DSM 1617. prokMSA_id:000939 X05869 Sulfolobus shibatae str. B12 DSM 5389 . 1.2.1.6.2 SUL.METALLICUS_SUBGROUP 3 seqs 1.2.1.6.2.001 OTU 3 seqs prokMSA_id:000947 D85519 Sulfolobus metallicus DSM 6482 . prokMSA_id:000945 U40813 Sulfolobus sp. str. LM. prokMSA_id:000946 X90479 Sulfolobus metallicus DSM 6482 . 1.2.1.7 SULFOLOBUS_SUBGROUP_II 31 seqs 1.2.1.7.1 SUL.ACIDOCALDARIUS_SUBGROUP 10 seqs 1.2.1.7.1.001 OTU 8 seqs prokMSA_id:071832 AF425661 Sulfolobus sp. MVSoil3/SC2 prokMSA_id:018034 AF425662 Sulfolobus sp. MVSoil6/SC1 prokMSA_id:000951 D14876 Sulfolobus acidocaldarius str. 98-3 ATCC 33909 . prokMSA_id:000948 D38777 Sulfolobus acidocaldarius str. N8. prokMSA_id:000952 U05018 Sulfolobus acidocaldarius. prokMSA_id:070477 U05018 Sulfolobus acidocaldarius and 23S genes complete prokMSA_id:000953 X03235 Sulfolobus solfataricus str. P1 DSM 1616 . prokMSA_id:000950 X90485 Sulfolobus "thuringiensis" str. Ron 12/I. 1.2.1.7.1.999 poor quality 2 seqs prokMSA_id:030009 AF130853 Sulfolobus acidocaldarius prokMSA_id:000949 D14053 Sulfolobus acidocaldarius str. 98-3 DSM 639. 1.2.1.7.2 SL.AZORICUS_SUBGROUP 6 seqs 1.2.1.7.2.001 OTU 3 seqs prokMSA_id:000955 D85520 Stygiolobus azoricus str. FC6 DSM 6296 . prokMSA_id:000954 U38360 Sulfolobus sp. str. B6/2. prokMSA_id:000956 X90480 Stygiolobus azoricus str. FC6 DSM 6296 . 1.2.1.7.2.999 poor quality 3 seqs prokMSA_id:021988 AY033387 Sulfolobus sp. prokMSA_id:080586 AY191882 Caldococcus sp. clone B21 prokMSA_id:080339 AY191883 Stygiolobus sp. clone B22 1.2.1.7.3 SFR.OHWAKUENSIS_SUBGROUP 15 seqs 1.2.1.7.3.001 OTU 7 seqs prokMSA_id:000964 AB010957 Sulfolobus yangmingensis str. YM. prokMSA_id:054912 AB022438 Sulfolobus sp. and 23S complete and prokMSA_id:021510 AB049051 pPCA12.14 prokMSA_id:039480 AB049052 pPCA19.6 prokMSA_id:000957 D38775 Acidianus sp. str. TA1. prokMSA_id:000958 D85507 Sulfurisphaera ohwakuensis str. TA-1 IFO 15161 . prokMSA_id:046167 NC_003106 Sulfolobus tokodaii complete genome 1.2.1.7.3.002 OTU 1 seq prokMSA_id:000963 AF169011 clone MS1. 1.2.1.7.3.003 OTU 1 seq prokMSA_id:000959 X96692 clone FFSB5. 1.2.1.7.3.004 OTU 3 seqs prokMSA_id:035548 AF391994 thermal soil clone YNPFFA2 prokMSA_id:029928 AF391995 thermal soil clone YNPFFA30 prokMSA_id:030893 AF391996 thermal soil clone YNPFFA52 1.2.1.7.3.999 poor quality 3 seqs prokMSA_id:000960 AB007309 clone pUWA14. prokMSA_id:000961 AB007314 clone pUWA10. prokMSA_id:000962 AB007316 clone pUWA19. 1.2.1.8 ACIDIANUS_SUBGROUP 24 seqs 1.2.1.8.1 ADI.INFERNUS_SUBGROUP 9 seqs 1.2.1.8.1.001 OTU 7 seqs prokMSA_id:000967 D38773 Acidianus infernus str. So4a DSM 3191 . prokMSA_id:000971 D38774 Acidianus ambivalens str. LEI 10 DSM 3772 . prokMSA_id:000965 D85505 Acidianus infernus str. So4a DSM 3191 . prokMSA_id:000969 D85506 Acidianus ambivalens str. LEI 10 DSM 3772 . prokMSA_id:000972 U38362 str. ICHT. prokMSA_id:000968 X89852 Acidianus infernus str. So4a DSM 3191 . prokMSA_id:000970 X90484 Acidianus ambivalens str. LEI 10 DSM 3772 . 1.2.1.8.1.999 poor quality 2 seqs prokMSA_id:000966 AF169012 clone MS2. prokMSA_id:080497 AY191898 clone BG20 1.2.1.8.2 ADI.BRIERLEYI_SUBGROUP 4 seqs 1.2.1.8.2.001 OTU 4 seqs prokMSA_id:019329 AF226987 Acidianus tengchongensis prokMSA_id:000975 D26489 Acidianus brierleyi IFO 15269. prokMSA_id:000973 U38359 Acidianus brierleyi. prokMSA_id:000974 X90477 Acidianus brierleyi DSM 1651 . 1.2.1.8.3 MTS.SEDULA_SUBGROUP 11 seqs 1.2.1.8.3.001 OTU 8 seqs prokMSA_id:000981 AF167083 Metallosphaera J1 str. J1. prokMSA_id:000978 D26491 Metallosphaera sedula IFO 15509 . prokMSA_id:000982 D38776 Metallosphaera sp. str. TA2. prokMSA_id:041957 D85508 Metallosphaera sp. complete cds prokMSA_id:088729 D86414 Sulfolobus hakonensis prokMSA_id:000977 U38361 Metallosphaera sedula. prokMSA_id:000979 X90481 Metallosphaera sedula DSM 5348 . prokMSA_id:000980 X90482 Metallosphaera prunae str. Ron 12/II DSM 10039 . 1.2.1.8.3.999 poor quality 3 seqs prokMSA_id:071671 AF425655 Metallosphaera sp. GIB11/00 prokMSA_id:080605 AY191884 Metallosphaera sp. clone B25 prokMSA_id:000976 D14052 Sulfolobus hakonensis str. HO1-1; H. 1.2.2 NON-THERMOPHILIC_CRENARCHAEOTA 1138 seqs 1.2.2.1 MARINE_CRENARCHAEOTA 1130 seqs 1.2.2.1.1 ENVIRONMENTAL_CLONE_FIE16_SUBGROUP 2 seqs 1.2.2.1.1.999 poor quality 2 seqs prokMSA_id:000984 D26206 soil from paddy field clone PAD19. prokMSA_id:000983 D26266 soil from soybean field clone FIE16. 1.2.2.1.2 ENVIRONMENTAL_CLONE_PVA2_SUBGROUP 50 seqs 1.2.2.1.2.001 OTU 26 seqs prokMSA_id:047920 AB049031 pPCA4.9 prokMSA_id:027202 AB049032 pPCA4.21 prokMSA_id:058499 AB072727 clone:pHAuA-A prokMSA_id:031497 AF223115 crenarchaeote ME-450_5 prokMSA_id:034970 AF355962 33-FL3A98 prokMSA_id:017613 AF355963 33-FL4A98 prokMSA_id:048878 AF355966 33-FL31A98 prokMSA_id:029105 AF355967 33-FL7A00 prokMSA_id:032910 AF355968 33-FL10A00 prokMSA_id:035542 AF355969 33-FL12A00 prokMSA_id:036575 AF355970 33-FL5A00 prokMSA_id:039672 AF355971 33-FL48A00 prokMSA_id:031017 AF355972 33-FL22A00 prokMSA_id:031662 AF355974 33-P20A98 prokMSA_id:023593 AF355975 33-P124A99 prokMSA_id:036288 AF355976 33-P48A99 prokMSA_id:043205 AF355977 33-P1A00 prokMSA_id:025617 AF355978 33-P28A00 prokMSA_id:036665 AF355979 33-P81A00 prokMSA_id:032499 AF355980 33-P91A00 prokMSA_id:089821 AJ567618 crenarchaeote clone MBAA4 prokMSA_id:089048 AJ567637 crenarchaeote clone MBAA50 prokMSA_id:088905 AJ567643 crenarchaeote clone MBMPA2 prokMSA_id:000986 U46678 Pele's Vents Archaea clone PVA2. prokMSA_id:000987 U46679 Pele's Vents Archaea clone PVA3. prokMSA_id:000992 U46680 Pele's Vents Archaea clone PVA4. 1.2.2.1.2.002 OTU 9 seqs prokMSA_id:065149 AY095656 crenarchaeote OS2K-5 prokMSA_id:065142 AY095664 OS2K-14 prokMSA_id:065138 AY095667 OS2K-18 prokMSA_id:076097 AY164278 crenarchaeote clone ALIA-110 prokMSA_id:076029 AY164291 crenarchaeote clone BLIA-100 prokMSA_id:075409 AY164311 crenarchaeote clone DLIA-146 prokMSA_id:075182 AY164322 crenarchaeote clone ULIA-109 prokMSA_id:080160 AY220724 crenarchaeote clone WCPAP20 prokMSA_id:000989 Z11573 Pacific Ocean station 49 500m depth clone 1.2.2.1.2.003 OTU 3 seqs prokMSA_id:076019 AJ535132 crenarchaeote clone JG36-GR-117 prokMSA_id:076974 AJ535135 crenarchaeote clone JG36-GR-137 prokMSA_id:084806 AY278087 crenarchaeote clone GRU20 1.2.2.1.2.999 poor quality 12 seqs prokMSA_id:051640 AF355964 33-FL25A98 prokMSA_id:035113 AF355965 33-FL138A98 prokMSA_id:036303 AF355973 33-P68A98 prokMSA_id:017750 AH005077 marine pN1-43 5' region prokMSA_id:065135 AY095668 crenarchaeote OS2K-20 prokMSA_id:089375 AY288359 crenarchaeote 97D-131-10 prokMSA_id:039635 U86478 marine pN1-43 5' region prokMSA_id:000993 Z11568 Pacific Ocean station 25 100m depth clone prokMSA_id:000988 Z11569 Pacific Ocean station 49 500m depth clone prokMSA_id:000990 Z11570 Pacific Ocean station 25 100m depth clone prokMSA_id:000991 Z11571 Pacific Ocean station 49 500m depth clone prokMSA_id:000985 Z11572 Pacific Ocean station 49 500m depth clone 1.2.2.1.3 ENVIRONMENTAL_CLONE_SBAR12_SUBGROUP 16 seqs 1.2.2.1.3.001 OTU 4 seqs prokMSA_id:051311 AF223125 crenarchaeote DS-5_P21 prokMSA_id:001002 M88075 Santa Barbara Channel clone SBAR5. prokMSA_id:001003 M88076 Santa Barbara Channel clone SBAR12. prokMSA_id:001001 U11043 clone ANTARCTIC12. 1.2.2.1.3.002 OTU 5 seqs prokMSA_id:000997 L24196 deep-sea holothurian sea cucumber midgut archaeobacterium prokMSA_id:001000 L24197 deep-sea holothurian sea cucumber midgut archaeobacterium prokMSA_id:000999 L24198 deep-sea holothurian sea cucumber midgut archaeobacterium prokMSA_id:000995 L24200 deep-sea holothurian sea cucumber midgut archaeobacterium prokMSA_id:000994 L24201 deep-sea holothurian sea cucumber midgut archaeobacterium 1.2.2.1.3.003 OTU 3 seqs prokMSA_id:097754 AY186063 clone CV1B4 small subunit prokMSA_id:095206 AY186064 clone EA1B9 small subunit prokMSA_id:096490 AY186065 clone EA1G9 small subunit 1.2.2.1.3.999 poor quality 4 seqs prokMSA_id:072719 AF201368 crenarchaeote isolate DOURO14 prokMSA_id:000996 L24195 deep-sea holothurian sea cucumber midgut archaeobacterium prokMSA_id:000998 L24199 deep-sea holothurian sea cucumber midgut archaeobacterium prokMSA_id:001004 M88079 Woods Hole clone WHARQ. 1.2.2.1.4 ENVIRONMENTAL_CLONE_4B7_SUBGROUP 1062 seqs 1.2.2.1.4.001 OTU 1 seq prokMSA_id:016284 AF419642 C1_R043 1.2.2.1.4.006 OTU 51 seqs prokMSA_id:055217 AY166043 clone FZ1aA18 prokMSA_id:055201 AY166059 clone FZ1aA9 prokMSA_id:055202 AY166060 clone FZ2aA21 prokMSA_id:055199 AY166062 clone FZ2aA1 prokMSA_id:055198 AY166063 clone FZ2aA2 prokMSA_id:055195 AY166066 clone FZ2aA9 prokMSA_id:055186 AY166075 clone FZ2aA20 prokMSA_id:055183 AY166077 clone FZ2aA23 prokMSA_id:055184 AY166078 clone FZ2aA52 prokMSA_id:055182 AY166079 clone FZ2aA63 prokMSA_id:078697 AY182066 clone FZ3aA101 prokMSA_id:078944 AY182067 clone FZ3aA103 prokMSA_id:078814 AY182068 clone FZ3aA20 prokMSA_id:078495 AY182069 clone FZ3aA110 prokMSA_id:078884 AY182070 clone FZ3aA125 prokMSA_id:078756 AY182071 clone FZ3aA111 prokMSA_id:078491 AY182072 clone FZ3aA112 prokMSA_id:079053 AY182073 clone FZ3aA117 prokMSA_id:078524 AY182074 clone FZ3aA119 prokMSA_id:078743 AY182075 clone FZ3aA122 prokMSA_id:078963 AY182076 clone FZ3aA126 prokMSA_id:078783 AY182077 clone FZ3aA137 prokMSA_id:078726 AY182078 clone FZ3aA143 prokMSA_id:079076 AY182079 clone FZ3aA27 prokMSA_id:078457 AY182080 clone FZ3aA28 prokMSA_id:078706 AY182081 clone FZ3aA33 prokMSA_id:078679 AY182082 clone FZ3aA4 prokMSA_id:078936 AY182083 clone FZ3bA101 prokMSA_id:078934 AY182084 clone FZ3bA105 prokMSA_id:078595 AY182086 clone FZ3bA11 prokMSA_id:078807 AY182087 clone FZ3bA110 prokMSA_id:079010 AY182088 clone FZ3bA114 prokMSA_id:078459 AY182089 clone FZ3bA116 prokMSA_id:078837 AY182091 clone FZ3bA149 prokMSA_id:078546 AY182092 clone FZ3bA132 prokMSA_id:078822 AY182093 clone FZ3bA130 prokMSA_id:078556 AY182094 clone FZ3bA133 prokMSA_id:078613 AY182095 clone FZ3bA137 prokMSA_id:079065 AY182096 clone FZ3bA142 prokMSA_id:078447 AY182097 clone FZ3bA145 prokMSA_id:078939 AY182098 clone FZ3bA150 prokMSA_id:078842 AY182099 clone FZ3bA127 prokMSA_id:078626 AY182100 clone FZ3bA129 prokMSA_id:078600 AY182101 clone FZ3bA136 prokMSA_id:078929 AY182102 clone FZ3bA139 prokMSA_id:078456 AY182103 clone FZ3bA144 prokMSA_id:079080 AY182104 clone FZ3bA148 prokMSA_id:078410 AY182105 clone FZ3bA24 prokMSA_id:078583 AY182106 clone FZ3bA26 prokMSA_id:078770 AY182108 clone FZ3bA6 prokMSA_id:078990 AY182109 clone FZ3bA27 1.2.2.1.4.028 OTU 4 seqs prokMSA_id:001088 AF186421 clone AR2. prokMSA_id:001087 AF186422 clone AR4. prokMSA_id:001086 AF186423 clone AR8. prokMSA_id:001085 AF186424 clone AR9. 1.2.2.1.4.033 OTU 1 seq prokMSA_id:001052 AF119130 unnamed organism. 1.2.2.1.4.039 OTU 2 seqs prokMSA_id:001019 AB019720 clone pMC2A36. prokMSA_id:034747 AF355807 33-P92A98 1.2.2.1.4.040 OTU 3 seqs prokMSA_id:001017 X96693 clone FFSB6. prokMSA_id:041469 Y08984 Archaea sp. clone FFSA1 prokMSA_id:019586 Y08985 Archaea sp. clone FFSA2 1.2.2.1.4.041 OTU 12 seqs prokMSA_id:064541 AF515506 crenarchaeote clone PPArcW20 prokMSA_id:035162 AJ419921 crenarchaeote clone PSPIHH28-2 prokMSA_id:019287 AJ419926 crenarchaeote clone PSSBEM10-6 prokMSA_id:076043 AJ535136 crenarchaeote clone JG36-GR-140 prokMSA_id:030300 AY016490 Front Range soil crenarchaeote FRC1x2 prokMSA_id:032046 AY016493 Front Range soil crenarchaeote FRC33A prokMSA_id:019206 AY016504 Front Range soil crenarchaeote FRD38 prokMSA_id:084510 AY278081 crenarchaeote clone GRU10 prokMSA_id:084669 AY278086 crenarchaeote clone GRU19 prokMSA_id:084196 AY278095 crenarchaeote clone GRU11 prokMSA_id:001011 X96688 clone FFSB1. prokMSA_id:001014 X96689 clone FFSB2. 1.2.2.1.4.042 OTU 1 seq prokMSA_id:001010 AF068822 VC2.1 Arc31 complete 1.2.2.1.4.043 OTU 1 seq prokMSA_id:001009 AF142788 clone ACE-6. 1.2.2.1.4.044 OTU 2 seqs prokMSA_id:001007 AF119135 unnamed organism. prokMSA_id:001008 AF119143 unnamed organism. 1.2.2.1.4.045 OTU 1 seq prokMSA_id:001006 U63343 clone pSL12. 1.2.2.1.4.046 OTU 1 seq prokMSA_id:016793 AB050231 SAGMA-Z 1.2.2.1.4.047 OTU 1 seq prokMSA_id:017695 AF424528 euryarchaeote MERTZ_2CM_6 1.2.2.1.4.048 OTU 1 seq prokMSA_id:017989 AF146247 CLEAR-24 1.2.2.1.4.051 OTU 1 seq prokMSA_id:022234 AY016471 Front Range soil crenarchaeote FRA27 1.2.2.1.4.052 OTU 151 seqs prokMSA_id:032035 AB050221 SAGMA-P prokMSA_id:047778 AB050228 SAGMA-W prokMSA_id:054107 AB050230 SAGMA-Y prokMSA_id:025116 AB050233 SAGMA-2 prokMSA_id:098573 AB107804 clone:ST-1 prokMSA_id:097036 AB107807 clone:ST-4 prokMSA_id:095947 AB107809 clone:ST-6 prokMSA_id:095787 AB107810 clone:ST-7 prokMSA_id:098252 AB107811 clone:ST-8 prokMSA_id:095657 AB107812 clone:ST-9 prokMSA_id:095611 AB107813 clone:ST-10 prokMSA_id:096993 AB107834 clone:SJ-1 prokMSA_id:098842 AB107841 clone:SJ-8 prokMSA_id:001040 AF058719 clone KBSCul1. prokMSA_id:001041 AF058720 clone KBSCul4. prokMSA_id:001042 AF058721 clone KBSCul5. prokMSA_id:001043 AF058724 clone KBSCul13. prokMSA_id:001044 AF058726 clone KBSNat2. prokMSA_id:001047 AF058729 clone KBSNat12. prokMSA_id:001048 AF058730 clone KBSNat20. prokMSA_id:034950 AF225593 clone AS00-24 prokMSA_id:052413 AF225610 clone AS01-08 prokMSA_id:040280 AF225640 clone AS08-08 prokMSA_id:027236 AF225645 clone AS08-13 prokMSA_id:025069 AF225676 clone AS17-15 prokMSA_id:038051 AF225693 clone AS17-35 prokMSA_id:045484 AF227635 crenarchaeote TRC132-3 small subunit prokMSA_id:051909 AF227636 crenarchaeote TRC132-6 small subunit prokMSA_id:026266 AF227637 crenarchaeote TRC132-7 small subunit prokMSA_id:030247 AF227638 crenarchaeote TRC132-8 small subunit prokMSA_id:046609 AF227639 crenarchaeote TRC132-9 small subunit prokMSA_id:041594 AF227640 crenarchaeote TRC23-10 small subunit prokMSA_id:043271 AF227641 crenarchaeote TRC23-28 small subunit prokMSA_id:032329 AF227642 crenarchaeote TRC23-30 small subunit prokMSA_id:039571 AF227643 crenarchaeote TRC23-31 small subunit prokMSA_id:024479 AF227644 crenarchaeote TRC23-38 small subunit prokMSA_id:071576 AF293506 crenarchaeote clone P4b-Ar-9 prokMSA_id:041952 AF293509 crenarchaeote clone P1-Ar-11 prokMSA_id:029448 AF293587 crenarchaeote clone P5-Ar2-7 prokMSA_id:051411 AF418928 clone HTA-B6 prokMSA_id:024755 AF418930 clone HTA-C5 prokMSA_id:026728 AF418934 clone HTA-D6 prokMSA_id:051520 AF418935 clone HTA-E7 prokMSA_id:024398 AF418938 clone HTA-G6 prokMSA_id:034883 AF418939 clone HTA-H8 prokMSA_id:088119 AF443589 clone SevArch-01 prokMSA_id:001079 AJ236457 clone ST1-6. prokMSA_id:001080 AJ236458 clone ST1-7. prokMSA_id:001081 AJ236459 clone ST1-8. prokMSA_id:051712 AJ236460 ST1-9 prokMSA_id:044157 AJ236461 ST1-10 prokMSA_id:018407 AJ236462 ST1-11 prokMSA_id:038901 AJ236463 ST1-12 prokMSA_id:023861 AJ236465 ST1-14 prokMSA_id:001082 AJ236466 clone ST1-15. prokMSA_id:038262 AJ236468 ST1-17 prokMSA_id:047313 AJ236471 ST1-20 prokMSA_id:047059 AJ236472 ST1-21 prokMSA_id:049743 AJ236473 ST1-22 prokMSA_id:048563 AJ236474 ST1-23 prokMSA_id:040229 AJ236475 ST1-24 prokMSA_id:001083 AJ236477 clone ST1-26. prokMSA_id:021531 AJ236478 ST1-27 prokMSA_id:025405 AJ236481 ST1-30 prokMSA_id:001084 AJ236509 clone S15-28. prokMSA_id:037198 AJ308913 crenarchaeote clone ARS1-c57 prokMSA_id:071074 AJ496176 crenarchaeote 34 kb genomic fragment prokMSA_id:074966 AJ535117 crenarchaeote clone Gitt-GR-5 prokMSA_id:076611 AJ535119 crenarchaeote clone Gitt-GR-31 prokMSA_id:075056 AJ535120 crenarchaeote clone Gitt-GR-39 prokMSA_id:076642 AJ535121 crenarchaeote clone Gitt-GR-47 prokMSA_id:075314 AJ535122 crenarchaeote clone Gitt-GR-74 prokMSA_id:076092 AJ535123 crenarchaeote clone Gitt-GR-78 prokMSA_id:094414 AJ583399 clone S15A-MN89A prokMSA_id:094571 AJ583400 clone S15A-MN93A prokMSA_id:094677 AJ583401 clone S15A-MN185A prokMSA_id:094649 AJ583412 clone GR-WP33-A1 prokMSA_id:094559 AJ583415 clone GR-WP33-A18 prokMSA_id:094656 AJ583416 clone GR-WP33-A32 prokMSA_id:095073 AJ583417 clone GR-WP33-A52 prokMSA_id:094335 AJ583418 clone GR-WP33-A103 prokMSA_id:094491 AJ583419 clone GR-WP33-A125 prokMSA_id:094363 AJ583420 clone GR-WP33-A128 prokMSA_id:094627 AJ583422 clone GR-WP33-A152 prokMSA_id:094791 AJ583423 clone GR-WP33-A156 prokMSA_id:044356 AY016472 Front Range soil crenarchaeote FRA27x2 prokMSA_id:020804 AY016473 Front Range soil crenarchaeote FRA31B prokMSA_id:021887 AY016474 Front Range soil crenarchaeote FRA32 prokMSA_id:051663 AY016475 Front Range soil crenarchaeote FRA33 prokMSA_id:049351 AY016476 Front Range soil crenarchaeote FRA9 prokMSA_id:036817 AY016477 Front Range soil crenarchaeote FRB1 prokMSA_id:039899 AY016478 Front Range soil crenarchaeote FRB15 prokMSA_id:031833 AY016479 Front Range soil crenarchaeote FRB25 prokMSA_id:033779 AY016481 Front Range soil crenarchaeote FRB31 prokMSA_id:049888 AY016482 Front Range soil crenarchaeote FRB32B prokMSA_id:043646 AY016483 Front Range soil crenarchaeote FRB32x2 prokMSA_id:027283 AY016484 Front Range soil crenarchaeote FRB33 prokMSA_id:049067 AY016485 Front Range soil crenarchaeote FRB38 prokMSA_id:022169 AY016486 Front Range soil crenarchaeote FRB9A prokMSA_id:040892 AY016488 Front Range soil crenarchaeote FRC15 prokMSA_id:034541 AY016489 Front Range soil crenarchaeote FRC1B prokMSA_id:019365 AY016491 Front Range soil crenarchaeote FRC27 prokMSA_id:042120 AY016492 Front Range soil crenarchaeote FRC32 prokMSA_id:016979 AY016496 Front Range soil crenarchaeote FRC9 prokMSA_id:047177 AY016498 Front Range soil crenarchaeote FRD15 prokMSA_id:051770 AY016499 Front Range soil crenarchaeote FRD25B prokMSA_id:024906 AY016501 Front Range soil crenarchaeote FRD31 prokMSA_id:028294 AY016503 Front Range soil crenarchaeote FRD33 prokMSA_id:034543 AY016505 Front Range soil crenarchaeote FRD9 prokMSA_id:029517 AY037651 soil clone S201 prokMSA_id:052407 AY037652 soil clone S202 prokMSA_id:017849 AY037654 soil clone S204 prokMSA_id:050233 AY037655 soil clone S205 prokMSA_id:079417 AY187879 clone AA2 prokMSA_id:079433 AY187899 clone J6 prokMSA_id:096847 AY192637 clone Ar18-7 prokMSA_id:096447 AY192638 clone Ar18-8 prokMSA_id:083023 AY217522 crenarchaeote clone WCA14 prokMSA_id:085695 AY217525 crenarchaeote clone WCA6 prokMSA_id:084783 AY217531 crenarchaeote clone WCA46 prokMSA_id:082908 AY278069 crenarchaeote clone ROB110 prokMSA_id:082723 AY278070 crenarchaeote clone ROB1A11 prokMSA_id:083676 AY278071 crenarchaeote clone ROB1A12 prokMSA_id:086441 AY278072 crenarchaeote clone ROB35 prokMSA_id:082641 AY278073 crenarchaeote clone ROB17 prokMSA_id:084335 AY278074 crenarchaeote clone ROB1A9 prokMSA_id:084392 AY278075 crenarchaeote clone ROBD8 prokMSA_id:085923 AY278076 crenarchaeote clone ROB34 prokMSA_id:086403 AY278078 crenarchaeote clone MAL7 prokMSA_id:084590 AY278083 crenarchaeote clone GRU16 prokMSA_id:082743 AY278089 crenarchaeote clone GRU22 prokMSA_id:085744 AY278096 crenarchaeote clone DOV1 prokMSA_id:086313 AY278097 crenarchaeote clone DOV2 prokMSA_id:084101 AY278098 crenarchaeote clone S247-3 prokMSA_id:084854 AY278099 crenarchaeote clone S248-6 prokMSA_id:083432 AY278101 crenarchaeote clone PET1-19 prokMSA_id:086320 AY278105 crenarchaeote clone Pus4-18 prokMSA_id:083832 AY278106 crenarchaeote clone 54D9 prokMSA_id:085616 AY280840 crenarchaeote clone ROB1A5 prokMSA_id:092214 AY341332 ZAR71 prokMSA_id:001111 U59968 clone pGrfA4. prokMSA_id:001139 U62811 clone SCA1145. prokMSA_id:001140 U62812 clone SCA1150. prokMSA_id:001141 U62813 clone SCA1151. prokMSA_id:001142 U62814 clone SCA1154. prokMSA_id:001143 U62815 clone SCA1158. prokMSA_id:001144 U62816 clone SCA1166. prokMSA_id:001145 U62817 clone SCA1170. prokMSA_id:001146 U62818 clone SCA1173. prokMSA_id:001147 U62819 clone SCA1175. prokMSA_id:001148 U62820 clone SCA11. 1.2.2.1.4.053 OTU 1 seq prokMSA_id:024835 AF223116 crenarchaeote ME-450_9 1.2.2.1.4.054 OTU 1 seq prokMSA_id:025136 AF424532 euryarchaeote MERTZ_0CM_40 1.2.2.1.4.055 OTU 1 seq prokMSA_id:029829 AJ428039 crenarchaeote clone FHMa18 1.2.2.1.4.060 OTU 3 seqs prokMSA_id:031759 AB050227 SAGMA-V prokMSA_id:049412 AB050240 SAGMA-10 prokMSA_id:046479 AB050241 SAGMA-11 1.2.2.1.4.061 OTU 1 seq prokMSA_id:068872 AY063699 clone RS500-14 1.2.2.1.4.062 OTU 1 seq prokMSA_id:058501 AB072728 clone:pHAuA-C 1.2.2.1.4.063 OTU 1 seq prokMSA_id:034426 AF424517 crenarchaeote MERTZ_2CM_59 1.2.2.1.4.065 OTU 1 seq prokMSA_id:058232 AF357906 MN13BT4-95 1.2.2.1.4.066 OTU 1 seq prokMSA_id:039230 AF361211 crenarchaeote clone SUBT-14 1.2.2.1.4.068 OTU 1 seq prokMSA_id:056627 AF515507 crenarchaeote clone PPArcW21 1.2.2.1.4.069 OTU 1 seq prokMSA_id:043404 AF424537 euryarchaeote MERTZ_21CM_339 1.2.2.1.4.070 OTU 1 seq prokMSA_id:046113 AF142859 BURTON-41 1.2.2.1.4.072 OTU 36 seqs prokMSA_id:073365 AJ006919 Crenarchaeote clone FFSC1 prokMSA_id:001020 AJ006921 clone FFSC3. prokMSA_id:001021 AJ006922 clone FFSC4. prokMSA_id:042691 AJ419918 crenarchaeote clone PSPIMM06-11 prokMSA_id:022978 AJ419919 crenarchaeote clone PSPIMM06-1 prokMSA_id:017237 AJ419920 crenarchaeote clone PSPIHH28-7 prokMSA_id:019462 AJ419922 crenarchaeote clone PSPIHH06-4 prokMSA_id:016887 AJ419923 crenarchaeote clone PSPIHH01-10 prokMSA_id:041874 AJ419924 crenarchaeote clone FSBH03-24 prokMSA_id:039972 AJ419925 crenarchaeote clone PSSBEM10-2 prokMSA_id:062429 AJ428024 crenarchaeote clone FHMa1 prokMSA_id:024613 AJ428025 crenarchaeote clone FHMa2 prokMSA_id:025161 AJ428026 crenarchaeote clone FHMa4 prokMSA_id:033954 AJ428027 crenarchaeote clone FHMa5 prokMSA_id:047577 AJ428028 crenarchaeote clone FHMa6 prokMSA_id:021737 AJ428029 crenarchaeote clone FHMa7 prokMSA_id:034458 AJ428030 crenarchaeote clone FHMa8 prokMSA_id:030076 AJ428031 crenarchaeote clone FHMa9 prokMSA_id:032037 AJ428032 crenarchaeote clone FHMa10 prokMSA_id:018790 AJ428033 crenarchaeote clone FHMa12 prokMSA_id:023999 AJ428034 crenarchaeote clone FHMa13 prokMSA_id:021645 AJ428035 crenarchaeote clone FHMa14 prokMSA_id:030739 AJ428036 crenarchaeote clone FHMa15 prokMSA_id:046804 AJ428037 crenarchaeote clone FHMa16 prokMSA_id:017941 AJ428038 crenarchaeote clone FHMa17 prokMSA_id:022520 AJ428040 crenarchaeote clone FHMa19 prokMSA_id:069984 AJ428041 crenarchaeote clone FHMa20 prokMSA_id:044467 AJ428042 crenarchaeote clone FHMa21 prokMSA_id:041294 AJ428043 crenarchaeote clone FHMa22 prokMSA_id:074010 AJ428044 crenarchaeote clone FHMa11 prokMSA_id:050427 AY016494 Front Range soil crenarchaeote FRC33B prokMSA_id:001015 X96690 clone FFSB3. prokMSA_id:001016 X96691 clone FFSB4. prokMSA_id:001018 X96694 clone FFSB7. prokMSA_id:001012 X96695 clone FFSB10. prokMSA_id:001013 X96696 clone FFSB11. 1.2.2.1.4.073 OTU 1 seq prokMSA_id:047653 AF146239 CLEAR-15 1.2.2.1.4.075 OTU 1 seq prokMSA_id:059832 AY133354 clone BB2_194 1.2.2.1.4.076 OTU 2 seqs prokMSA_id:059836 AY133352 clone OB3_82 prokMSA_id:059833 AY133353 clone BB2_88 1.2.2.1.4.077 OTU 1 seq prokMSA_id:059835 AY133349 clone BB2_211 1.2.2.1.4.078 OTU 1 seq prokMSA_id:063272 AF523944 clone ARCP2-5 1.2.2.1.4.079 OTU 1 seq prokMSA_id:068279 AF361691 clone MN13BT4-88 1.2.2.1.4.080 OTU 1 seq prokMSA_id:070916 AF201357 crenarchaeote isolate DOURO3 1.2.2.1.4.081 OTU 3 seqs prokMSA_id:075793 AY164299 crenarchaeote clone BLIA-70 prokMSA_id:074947 AY164301 crenarchaeote clone BLIA-77 prokMSA_id:085566 AY226371 crenarchaeote clone DBBA-163 1.2.2.1.4.082 OTU 1 seq prokMSA_id:074989 AY164303 crenarchaeote clone BLIA-93 1.2.2.1.4.083 OTU 1 seq prokMSA_id:075407 AJ535127 crenarchaeote clone JG36-GR-44 1.2.2.1.4.084 OTU 1 seq prokMSA_id:075435 AY164320 crenarchaeote clone ULIA-103 1.2.2.1.4.085 OTU 1 seq prokMSA_id:076013 AJ535134 crenarchaeote clone JG36-GR-130 1.2.2.1.4.086 OTU 1 seq prokMSA_id:077127 AJ535131 crenarchaeote clone JG36-GR-101 1.2.2.1.4.087 OTU 1 seq prokMSA_id:082730 AY217517 crenarchaeote clone WCA24 1.2.2.1.4.088 OTU 1 seq prokMSA_id:083494 AY217529 crenarchaeote clone WCA52 1.2.2.1.4.089 OTU 1 seq prokMSA_id:083550 AY217518 crenarchaeote clone WCA22 1.2.2.1.4.090 OTU 1 seq prokMSA_id:084000 AY217528 crenarchaeote clone WCA56 1.2.2.1.4.092 OTU 375 seqs prokMSA_id:001162 AB015274 str. JTB168. prokMSA_id:001163 AB015275 str. JTB167. prokMSA_id:001164 AB015276 str. JTB153. prokMSA_id:001165 AB015277 str. JTA47. prokMSA_id:001166 AB015278 str. JTA266. prokMSA_id:001098 AB019722 clone pIVWA101. prokMSA_id:001099 AB019723 clone pMC2A1. prokMSA_id:001100 AB019724 clone pMC1A11. prokMSA_id:001101 AB019725 clone pMC1A103. prokMSA_id:001102 AB019726 clone pIVWA108. prokMSA_id:001103 AB019727 clone pIVWA1. prokMSA_id:001104 AB019728 clone pIVWA5. prokMSA_id:001105 AB019729 clone pIVWA11. prokMSA_id:001106 AB019730 clone pIVWA2. prokMSA_id:001107 AB019731 clone pIVWA3. prokMSA_id:049264 AB049029 pPCA2.4 prokMSA_id:050209 AB049030 pPCA4.4 prokMSA_id:050748 AB050205 SAGMA-A prokMSA_id:041550 AB050207 SAGMA-C prokMSA_id:039914 AB050232 SAGMA-1 prokMSA_id:030405 AB050234 SAGMA-3 prokMSA_id:031165 AB050238 SAGMA-8 prokMSA_id:027331 AB050239 SAGMA-9 prokMSA_id:047672 AB050244 SAGMA-14 prokMSA_id:058502 AB072725 clone:pHAuB-30 prokMSA_id:078993 AB094533 clone:OHKA3.34 prokMSA_id:079019 AB094556 clone:OHKA11.45 prokMSA_id:082922 AB095135 clone:pCIRA-ZI prokMSA_id:085510 AB095136 clone:pCIRA-ZII prokMSA_id:079364 AB099993 sequences clone: IndA2-6 prokMSA_id:095602 AB107817 clone:TN-4 prokMSA_id:095459 AB107819 clone:TN-6 prokMSA_id:098659 AB107821 clone:TN-8 prokMSA_id:097768 AB107823 clone:TN-10 prokMSA_id:098113 AB107824 clone:MK-1 prokMSA_id:095870 AB107825 clone:MK-2 prokMSA_id:097165 AB107826 clone:MK-3 prokMSA_id:095790 AB107827 clone:MK-4 prokMSA_id:097857 AB107828 clone:MK-5 prokMSA_id:095387 AB107829 clone:MK-6 prokMSA_id:097317 AB107830 clone:MK-7 prokMSA_id:095984 AB107833 clone:MK-10 prokMSA_id:084267 AB108843 crenarchaeote clone: pCIRA102 prokMSA_id:084664 AB108844 crenarchaeote clone: pCIRA104 prokMSA_id:001030 AF050613 clone WCHA1-38. prokMSA_id:019164 AF052943 marine TS10C286 prokMSA_id:001167 AF052946 clone TS10C299. prokMSA_id:001168 AF052948 clone TS235C306. prokMSA_id:001169 AF052949 clone TS235C310. prokMSA_id:069323 AF083071 Cenarchaeum symbiosum strain A hypothetical protein 01 complete cds; 23S and genes complete ; glutamate-1-semialdehyde aminotransferase gsat and hypothetical protein 02 genes complete cds; tRNA-Tyr complete ; triosephosphate isomerase tim TATA box binding protein TF2D archael family B polymerase pol1 dCMP deaminase dcdt ATP-dependent helicase peptidyl-prolyl cis/trans isomerase pinA hypothetical protein 03 menaquinone biosynthesis protein mena site-specific methyltransferase and glucose-1-dehydrogenase gdh genes complete cds; and unknown genes prokMSA_id:069639 AF083072 Cenarchaeum symbiosum strain B histone H1 binding protein hc2 hypothetical protein lysyl tRNA synthetase syk and hypothetical protein 01 genes complete cds; 23S and genes complete ; glutamate-1-semialdehyde aminotransferase gsat and hypothetical protein 02 genes complete cds; tRNA-Tyr complete ; triose phosphate isomerase tim TATA box binding protein TF2D archael family B polymerase B pol1 dCMP deaminase dcdt ATP-dependent helicase hypothetical protein 03 menaquinone biosynthesis protein mena and site-specific methyltransferase genes complete cds; and unknown genes prokMSA_id:001049 AF119125 unnamed organism. prokMSA_id:001050 AF119126 unnamed organism. prokMSA_id:001051 AF119127 unnamed organism. prokMSA_id:001053 AF119131 unnamed organism. prokMSA_id:001054 AF119134 unnamed organism. prokMSA_id:001055 AF119136 unnamed organism. prokMSA_id:001056 AF119138 unnamed organism. prokMSA_id:038148 AF119141 ACA1-0cm prokMSA_id:028065 AF119142 ACA1-9cm prokMSA_id:036100 AF119144 ACA16-9cm prokMSA_id:048059 AF119145 ACA17-9cm prokMSA_id:047352 AF119146 ACA3-0cm prokMSA_id:040737 AF119147 ACA4-0cm prokMSA_id:001033 AF121092 clone ODPB-A2. prokMSA_id:001034 AF121093 clone ODPB-A3. prokMSA_id:001035 AF121094 clone ODPB-A6. prokMSA_id:001036 AF121095 clone ODPB-A7. prokMSA_id:001037 AF121096 clone ODPB-A9. prokMSA_id:001038 AF121097 clone ODPB-A12. prokMSA_id:001039 AF121098 clone ODPB-A18. prokMSA_id:001151 AF121987 str. DCM74159. prokMSA_id:001152 AF121988 str. DCM74161. prokMSA_id:001153 AF121991 str. DCM863. prokMSA_id:001154 AF121992 str. DCM858. prokMSA_id:001155 AF121993 str. DCM860. prokMSA_id:001156 AF121994 str. DCM861. prokMSA_id:001157 AF121995 str. DCM862. prokMSA_id:001158 AF121998 str. DCM867. prokMSA_id:001159 AF121999 str. DCM871. prokMSA_id:001160 AF122000 str. DCM873. prokMSA_id:001161 AF122001 str. DCM874. prokMSA_id:030491 AF193558 n1d prokMSA_id:072341 AF201355 crenarchaeote isolate DOURO1 prokMSA_id:072054 AF201356 crenarchaeote isolate DOURO2 prokMSA_id:069854 AF201358 crenarchaeote isolate DOURO4 prokMSA_id:073249 AF201359 crenarchaeote isolate DOURO5 prokMSA_id:070963 AF201360 crenarchaeote isolate DOURO6 prokMSA_id:070380 AF201362 crenarchaeote isolate DOURO8 prokMSA_id:070364 AF201363 crenarchaeote isolate DOURO9 prokMSA_id:071471 AF201367 crenarchaeote isolate DOURO13 prokMSA_id:050213 AF223111 crenarchaeote AT-5_1 prokMSA_id:046151 AF223112 crenarchaeote AT-200_1 prokMSA_id:040233 AF223113 crenarchaeote AT-200_7 prokMSA_id:044880 AF223114 crenarchaeote CA-15_P18 prokMSA_id:047499 AF223117 crenarchaeote ME-450_20 prokMSA_id:020445 AF223118 crenarchaeote ME-450_P3 prokMSA_id:043298 AF223120 crenarchaeote SB95_1 prokMSA_id:048000 AF223121 crenarchaeote SB95_20 prokMSA_id:042096 AF223122 crenarchaeote DN-5_1 prokMSA_id:024982 AF223123 crenarchaeote DN-200_1 prokMSA_id:022813 AF223126 crenarchaeote AM-20A_101 prokMSA_id:018705 AF223127 crenarchaeote AM-20A_102 prokMSA_id:033838 AF223128 crenarchaeote AM-20A_103 prokMSA_id:018651 AF223129 crenarchaeote AM-20A_104 prokMSA_id:051666 AF223130 crenarchaeote AM-20A_117 prokMSA_id:052765 AF224859 clone Car132fc prokMSA_id:020972 AF290521 marine AEGEAN_56 prokMSA_id:051218 AF290529 marine AEGEAN_67 prokMSA_id:045797 AF290532 marine AEGEAN_69 prokMSA_id:020676 AF290533 marine AEGEAN_70 prokMSA_id:020606 AF293018 Green Bay ferromanganous micronodule ARA7 prokMSA_id:050785 AF293019 Green Bay ferromanganous micronodule ARC12 prokMSA_id:053321 AF355808 33-P8A00 prokMSA_id:052340 AF355809 33-P76A00 prokMSA_id:026471 AF355824 33-FL28A00 prokMSA_id:048375 AF355825 33-FL42A00 prokMSA_id:039849 AF355826 33-FL19A00 prokMSA_id:049426 AF355827 33-FL39A00 prokMSA_id:033790 AF355828 33-FL40A00 prokMSA_id:052231 AF355829 33-FL23A00 prokMSA_id:050759 AF355830 33-P61A00 prokMSA_id:048526 AF355831 33-P62A00 prokMSA_id:051294 AF355832 33-P47A00 prokMSA_id:038153 AF355834 33-P7A00 prokMSA_id:050061 AF355845 33-FL10A98 prokMSA_id:038959 AF355846 33-FL17A98 prokMSA_id:029644 AF355847 33-FL146A98 prokMSA_id:046718 AF355848 33-FL28A98 prokMSA_id:040678 AF355849 33-P94A98 prokMSA_id:035902 AF355850 33-P49A00 prokMSA_id:036700 AF355851 33-FL6A98 prokMSA_id:030828 AF355853 33-P4A00 prokMSA_id:027089 AF355854 33-P16A00 prokMSA_id:020712 AF355855 33-P38A00 prokMSA_id:037727 AF355873 33-P88A00 prokMSA_id:016872 AF355875 33-FL13A98 prokMSA_id:029081 AF355879 33-P39A98 prokMSA_id:021833 AF355929 33-FL46A00 prokMSA_id:051968 AF355930 33-FL26A00 prokMSA_id:027531 AF355931 33-P67A98 prokMSA_id:037329 AF355933 33-P113A98 prokMSA_id:030907 AF355935 33-P114A99 prokMSA_id:033211 AF355936 33-P35A00 prokMSA_id:046001 AF355937 33-FL20A00 prokMSA_id:033285 AF355939 33-FL29A98 prokMSA_id:040195 AF355940 33-FL24A98 prokMSA_id:018531 AF355944 33-FL11A98 prokMSA_id:052679 AF355945 33-FL7A98 prokMSA_id:041885 AF355946 33-FL6A00 prokMSA_id:049077 AF355947 33-P53A98 prokMSA_id:052312 AF355950 33-P51A99 prokMSA_id:018477 AF355951 33-P3A00 prokMSA_id:037310 AF355952 33-P6A00 prokMSA_id:037424 AF355953 33-P15A00 prokMSA_id:044089 AF355954 33-P17A00 prokMSA_id:027513 AF355955 33-P18A00 prokMSA_id:018439 AF355956 33-P85A00 prokMSA_id:022421 AF355957 33-P19A00 prokMSA_id:022307 AF355958 33-FL49A00 prokMSA_id:046457 AF355959 33-FL50A00 prokMSA_id:028783 AF355981 33-P89A00 prokMSA_id:038520 AF393304 crenarchaeote 15G10 ; and glutamate semialdehyde aminotransferase cds prokMSA_id:033041 AF393305 crenarchaeote 19H08 prokMSA_id:050335 AF393306 crenarchaeote 31B02 ; and glutamate semialdehyde aminotransferase cds prokMSA_id:026361 AF393307 crenarchaeote 83A10 ; and glutamate semialdehyde aminotransferase cds prokMSA_id:070553 AF393466 crenarchaeote 74A4 genomic prokMSA_id:034929 AF418937 clone HTA-F4 prokMSA_id:073495 AF419636 C1_R010 prokMSA_id:070288 AF419646 CS_R008 prokMSA_id:019543 AF420236 Crenarchaeote symbiont of Axinella damicornis prokMSA_id:036985 AF420237 Crenarchaeote symbiont of Axinella verrucosa prokMSA_id:031020 AF421159 Crenarchaeote symbiont of Axinella sp. prokMSA_id:023717 AF424516 crenarchaeote MERTZ_2CM_56 prokMSA_id:027681 AF424518 crenarchaeote MERTZ_2CM_149 prokMSA_id:045476 AF424520 crenarchaeote MERTZ_0CM_8 prokMSA_id:040917 AF424521 crenarchaeote MERTZ_0CM_48 prokMSA_id:034562 AF424523 crenarchaeote MERTZ_0CM_362 prokMSA_id:023293 AF440710 marine crenarchaeote ARCT1-26 prokMSA_id:018081 AF440724 marine crenarchaeote ARCT1-54 prokMSA_id:063636 AF526980 clone pEPR109 prokMSA_id:063635 AF526981 clone pEPR194 prokMSA_id:074671 AF526982 clone pEPR624 prokMSA_id:063634 AF526983 clone pEPR853 prokMSA_id:063632 AF526984 clone pEPR149 prokMSA_id:055912 AF526987 clone pEPR113 prokMSA_id:063627 AF526988 clone pEPR161 prokMSA_id:059084 AJ294854 19b-5 clone 19b-5 prokMSA_id:059067 AJ294873 19b-52 clone 19b-52 prokMSA_id:059066 AJ294874 19a-1 clone 19a-1 prokMSA_id:059065 AJ294875 19a-4 clone 19a-4 prokMSA_id:056252 AJ294876 19a-5 clone 19a-5 prokMSA_id:059064 AJ294877 19a-14 clone 19a-14 prokMSA_id:059062 AJ294878 19a-18 clone 19a-18 prokMSA_id:059061 AJ294879 19a-19 clone 19a-19 prokMSA_id:059060 AJ294880 19a-23 clone 19a-23 prokMSA_id:059059 AJ294881 19a-27 clone 19a-27 prokMSA_id:028911 AJ347774 marine archaeal group 1 crenarchaeote clone ST-3K4A prokMSA_id:028779 AJ347775 marine archaeal group 1 crenarchaeote clone ST-12K13A prokMSA_id:039494 AJ347776 marine archaeal group 1 crenarchaeote clone ST-12K16A prokMSA_id:034469 AJ347777 marine archaeal group 1 crenarchaeote clone ST-12K2A prokMSA_id:075293 AJ535118 crenarchaeote clone Gitt-GR-27 prokMSA_id:088753 AJ567619 crenarchaeote clone MBAA12 prokMSA_id:090722 AJ567620 crenarchaeote clone MBAA14 prokMSA_id:090478 AJ567621 crenarchaeote clone MBAA15 prokMSA_id:088870 AJ567622 crenarchaeote clone MBAA16 prokMSA_id:090024 AJ567623 crenarchaeote clone MBAA17 prokMSA_id:088731 AJ567624 crenarchaeote clone MBAA21 prokMSA_id:089946 AJ567625 crenarchaeote clone MBAA23 prokMSA_id:089670 AJ567626 crenarchaeote clone MBAA25 prokMSA_id:089747 AJ567627 crenarchaeote clone MBAA28 prokMSA_id:089613 AJ567629 crenarchaeote clone MBAA33 prokMSA_id:090404 AJ567630 crenarchaeote clone MBAA37 prokMSA_id:088140 AJ567631 crenarchaeote clone MBAA38 prokMSA_id:090673 AJ567632 crenarchaeote clone MBAA41 prokMSA_id:090294 AJ567633 crenarchaeote clone MBAA42 prokMSA_id:088261 AJ567634 crenarchaeote clone MBAA43 prokMSA_id:088985 AJ567635 crenarchaeote clone MBAA46 prokMSA_id:089190 AJ567636 crenarchaeote clone MBAA48 prokMSA_id:088087 AJ567638 crenarchaeote clone MBAA52 prokMSA_id:088801 AJ567639 crenarchaeote clone MBAA54 prokMSA_id:088364 AJ567641 crenarchaeote clone MBAA65 prokMSA_id:088832 AJ567642 crenarchaeote clone MBAA69 prokMSA_id:088615 AJ567644 crenarchaeote clone MBMPA7 prokMSA_id:089361 AJ567645 crenarchaeote clone MBMPA11 prokMSA_id:089805 AJ567646 crenarchaeote clone MBMPA13 prokMSA_id:088306 AJ567647 crenarchaeote clone MBMPA14 prokMSA_id:090639 AJ567648 crenarchaeote clone MBMPA16 prokMSA_id:088421 AJ567649 crenarchaeote clone MBMPA19 prokMSA_id:088971 AJ567650 crenarchaeote clone MBMPA21 prokMSA_id:088202 AJ567651 crenarchaeote clone MBMPA22 prokMSA_id:089136 AJ567652 crenarchaeote clone MBMPA25 prokMSA_id:089823 AJ567653 crenarchaeote clone MBMPA28 prokMSA_id:090004 AJ567654 crenarchaeote clone MBMPA30 prokMSA_id:090776 AJ567655 crenarchaeote clone MBMPA31 prokMSA_id:088599 AJ567656 crenarchaeote clone MBMPA32 prokMSA_id:090129 AJ567657 crenarchaeote clone MBMPA35 prokMSA_id:088679 AJ567658 crenarchaeote clone MBMPA36 prokMSA_id:088750 AJ567659 crenarchaeote clone MBMPA38 prokMSA_id:089762 AJ567660 crenarchaeote clone MBMPA41 prokMSA_id:090028 AJ567661 crenarchaeote clone MBMPA49 prokMSA_id:089753 AJ567662 crenarchaeote clone MBMPA51 prokMSA_id:089784 AJ567663 crenarchaeote clone MBMPA54 prokMSA_id:089859 AJ567665 crenarchaeote clone MBMBA61 prokMSA_id:090167 AJ567666 crenarchaeote clone MBMPA68 prokMSA_id:033114 AY029297 crenarchaeote Arc2 prokMSA_id:064960 AY095639 crenarchaeote OS3.5K-28 prokMSA_id:064955 AY095642 crenarchaeote OS3.5K-36 prokMSA_id:065151 AY095653 OS2K-2 prokMSA_id:065148 AY095654 OS2K-3 prokMSA_id:065147 AY095657 crenarchaeote OS2K-6 prokMSA_id:065144 AY095660 OS2K-10 prokMSA_id:086251 AY157654 crenarchaeote clone MI47h3m2 prokMSA_id:085472 AY157655 crenarchaeote clone MI47h3p2 prokMSA_id:084383 AY157656 crenarchaeote clone SU10h1d2 prokMSA_id:082591 AY157657 crenarchaeote clone SU10h3a prokMSA_id:082775 AY157658 crenarchaeote clone SU10h3g prokMSA_id:086411 AY157659 crenarchaeote clone LA14h1a prokMSA_id:083176 AY157660 crenarchaeote clone LA14h1b prokMSA_id:086254 AY157661 crenarchaeote clone OA01h1d prokMSA_id:083835 AY157662 crenarchaeote clone VI96e1a prokMSA_id:082722 AY157663 crenarchaeote clone VI96e1f prokMSA_id:085017 AY157664 crenarchaeote clone VI96h1b prokMSA_id:085867 AY157665 crenarchaeote clone VI96h1c prokMSA_id:076348 AY164285 crenarchaeote clone ALIA-154 prokMSA_id:076417 AY164287 crenarchaeote clone ALIA-188 prokMSA_id:077125 AY164292 crenarchaeote clone BLIA-110 prokMSA_id:077177 AY164318 crenarchaeote clone DLIA-86 prokMSA_id:076259 AY164319 crenarchaeote clone ULIA-100 prokMSA_id:076047 AY164327 crenarchaeote clone ULIA-56 prokMSA_id:055223 AY166039 clone FZ1aA3 prokMSA_id:055220 AY166040 clone FZ1aA5 prokMSA_id:055219 AY166041 clone FZ1aA6 prokMSA_id:055218 AY166042 clone FZ1aA14 prokMSA_id:055214 AY166046 clone FZ1aA159 prokMSA_id:055212 AY166048 clone FZ1aA163 prokMSA_id:055209 AY166053 clone FZ1aA8 prokMSA_id:055197 AY166064 clone FZ2aA15 prokMSA_id:055192 AY166069 clone FZ2aA7 prokMSA_id:055191 AY166070 clone FZ2aA38 prokMSA_id:055170 AY166092 clone FZ2bA19 prokMSA_id:055169 AY166093 clone FZ2bA39 prokMSA_id:055168 AY166094 clone FZ2bA8 prokMSA_id:055167 AY166095 clone FZ2bA13 prokMSA_id:055166 AY166096 clone FZ2bA60 prokMSA_id:055164 AY166098 clone FZ2bA162 prokMSA_id:055161 AY166101 clone FZ2bA184 prokMSA_id:055158 AY166104 clone FZ2bA16 prokMSA_id:055156 AY166106 clone FZ2bA64 prokMSA_id:055155 AY166107 clone FZ2bA101 prokMSA_id:055154 AY166108 clone FZ2bA18 prokMSA_id:055145 AY166116 clone FZ2aA59 prokMSA_id:055146 AY166119 clone FZ2bA30 prokMSA_id:078900 AY182111 clone FZ3bA20 prokMSA_id:078975 AY182112 clone FZ3bA18 prokMSA_id:078433 AY182113 clone FZ3bA51 prokMSA_id:078537 AY182115 clone FZ3bA111 prokMSA_id:078780 AY182116 clone FZ3aA116 prokMSA_id:078643 AY182117 clone FZ3bA1 prokMSA_id:078652 AY182118 clone FZ3bA107 prokMSA_id:078978 AY182119 clone FZ3bA124 prokMSA_id:078788 AY182120 clone FZ3bA126 prokMSA_id:078700 AY182121 clone FZ3bA131 prokMSA_id:098055 AY192627 clone Ar08-1 prokMSA_id:097842 AY192629 clone Ar18-3 prokMSA_id:098582 AY192630 clone Ar19-17 prokMSA_id:097121 AY192631 clone Ar20-3 prokMSA_id:097590 AY192632 clone Ar23-13 prokMSA_id:098594 AY192633 clone Ar25-51 prokMSA_id:096841 AY192634 clone Ar12-16 prokMSA_id:096579 AY192635 clone Ar18-4 prokMSA_id:097261 AY192636 clone Ar24-9 prokMSA_id:097663 AY192639 clone Ar19-24 prokMSA_id:095599 AY192640 clone Ar19-36 prokMSA_id:097677 AY192641 clone Ar23-23 prokMSA_id:096948 AY192642 clone Ar23-28 prokMSA_id:097122 AY192643 clone Ar24-16 prokMSA_id:095695 AY192644 clone Ar18-1 prokMSA_id:098278 AY192645 clone Ar24-5 prokMSA_id:085220 AY217519 crenarchaeote clone WCA2 prokMSA_id:084259 AY217523 crenarchaeote clone WCA13 prokMSA_id:083684 AY217524 crenarchaeote clone WCA58 prokMSA_id:086342 AY217532 crenarchaeote clone WCA44 prokMSA_id:083584 AY217533 crenarchaeote clone WCA39 prokMSA_id:084776 AY217534 crenarchaeote clone WCA38 prokMSA_id:080389 AY220711 crenarchaeote clone WCPAP7 prokMSA_id:080748 AY220725 crenarchaeote clone WCPAP21 prokMSA_id:084071 AY225420 clone AFRICA_1/1-2 prokMSA_id:086211 AY225425 clone AFRICA_1/18-1 prokMSA_id:086509 AY225426 clone AFRICA_1/18-7 prokMSA_id:084850 AY225427 clone AFRICA_1/18-8 prokMSA_id:084324 AY225428 clone AFRICA_2/8-6 prokMSA_id:085230 AY226370 crenarchaeote clone DBBA-161 prokMSA_id:090142 AY288356 crenarchaeote 97E-131-18 prokMSA_id:088239 AY288360 crenarchaeote 97D-131-11A prokMSA_id:090556 AY288362 crenarchaeote 97D-235-19 prokMSA_id:088244 AY288375 crenarchaeote 95B-55-2G prokMSA_id:089844 AY326273 crenarchaeote clone Arch621-2 prokMSA_id:089074 AY326274 crenarchaeote clone Arch621-1 prokMSA_id:092285 AY345167 clone 621-8 prokMSA_id:092060 AY345170 clone 624-11 prokMSA_id:092181 AY345171 clone 624-13 prokMSA_id:092247 AY345172 clone 624-20 prokMSA_id:092050 AY345179 clone 626-23 prokMSA_id:093028 AY345186 clone 626-97 prokMSA_id:093050 AY354111 clone pIR3AC03 prokMSA_id:092387 AY354117 clone pIR3AA04 prokMSA_id:001022 D87348 unnamed organism. prokMSA_id:001023 D87349 unnamed organism. prokMSA_id:001024 D87350 unnamed organism. prokMSA_id:001005 U39635 clone 4B7. prokMSA_id:046043 U40238 crenarchaeote 4B7 40 kb genomic fragment prokMSA_id:001029 U51469 Cenarchaeum symbiosum. prokMSA_id:001126 U71109 clone PM7. prokMSA_id:001127 U71110 clone PM8. prokMSA_id:001128 U71111 clone PM23. prokMSA_id:001129 U71112 clone C6. prokMSA_id:001130 U71113 clone C11. prokMSA_id:001131 U71114 clone C20. prokMSA_id:001132 U71115 clone C33. prokMSA_id:001133 U71116 clone C35. prokMSA_id:001134 U71117 clone C46. prokMSA_id:001135 U71118 clone C48. prokMSA_id:001089 U78195 crenarchaeote SB95-8 prokMSA_id:001090 U78196 crenarchaeote SB95-16 prokMSA_id:001092 U78198 crenarchaeote SB95-54 prokMSA_id:001093 U78199 clone SB95-57. prokMSA_id:001094 U78200 crenarchaeote SB95-59 prokMSA_id:001095 U78202 crenarchaeote SB95-61 prokMSA_id:001138 U81531 str. p712-13. prokMSA_id:024434 U86488 marine pB1-100 prokMSA_id:001025 U87517 clone LMA238. prokMSA_id:001026 U87518 clone LMA137. prokMSA_id:001027 U87519 clone LMA229. prokMSA_id:001028 U87520 clone LMA226. 1.2.2.1.4.094 OTU 20 seqs prokMSA_id:018486 AB050208 SAGMA-D prokMSA_id:030678 AB050229 SAGMA-X prokMSA_id:051438 AF226267 maize root ZmrA1 prokMSA_id:036391 AF226269 maize root ZmrA30 prokMSA_id:043224 AF226270 maize root ZmrA38 prokMSA_id:031693 AF226271 maize root ZmrA4 prokMSA_id:021673 AF226272 maize root ZmrA42 prokMSA_id:073503 AF389433 clone SRS62DAR03 prokMSA_id:077040 AJ535124 crenarchaeote clone JG36-GR-7 prokMSA_id:076607 AJ535126 crenarchaeote clone JG36-GR-30 prokMSA_id:075887 AJ535128 crenarchaeote clone JG36-GR-52 prokMSA_id:076825 AJ535129 crenarchaeote clone JG36-GR-88 prokMSA_id:077270 AJ535130 crenarchaeote clone JG36-GR-93 prokMSA_id:082692 AY217515 crenarchaeote clone WCA1 prokMSA_id:083491 AY217516 crenarchaeote clone WCA31 prokMSA_id:084872 AY217520 crenarchaeote clone WCA19 prokMSA_id:082969 AY217521 crenarchaeote clone WCA17 prokMSA_id:084300 AY217530 crenarchaeote clone WCA51 prokMSA_id:082652 AY278079 crenarchaeote clone STE2 prokMSA_id:082560 AY278091 crenarchaeote clone GRU25 1.2.2.1.4.095 OTU 1 seq prokMSA_id:084414 AY217527 crenarchaeote clone WCA9 1.2.2.1.4.096 OTU 1 seq prokMSA_id:084416 AY278092 crenarchaeote clone GRU27 1.2.2.1.4.097 OTU 1 seq prokMSA_id:085692 AY278100 crenarchaeote clone S248-7 1.2.2.1.4.098 OTU 1 seq prokMSA_id:085987 AY217526 crenarchaeote clone WCA66 1.2.2.1.4.099 OTU 1 seq prokMSA_id:093296 AB119631 euryarchaeote clone:ESYB75 1.2.2.1.4.100 OTU 2 seqs prokMSA_id:093605 AB119571 euryarchaeote clone:ESYB15 prokMSA_id:093870 AB119572 euryarchaeote clone:ESYB16 1.2.2.1.4.101 OTU 1 seq prokMSA_id:093700 AB119566 euryarchaeote clone:ESYB10 1.2.2.1.4.102 OTU 1 seq prokMSA_id:093797 AB119582 euryarchaeote clone:ESYB26 1.2.2.1.4.103 OTU 1 seq prokMSA_id:093859 AB119573 euryarchaeote clone:ESYB17 1.2.2.1.4.104 OTU 1 seq prokMSA_id:095026 AJ583402 clone S15A-MN164A 1.2.2.1.4.105 OTU 2 seqs prokMSA_id:095354 AY186060 clone EA1E9 small subunit prokMSA_id:095542 AY186061 clone EA1E2 small subunit 1.2.2.1.4.106 OTU 1 seq prokMSA_id:097287 AY186062 clone EA1F4 small subunit 1.2.2.1.4.107 OTU 1 seq prokMSA_id:097782 AY211711 crenarchaeote clone GoM GC234 626R 1.2.2.1.4.108 OTU 1 seq prokMSA_id:098783 AY211688 crenarchaeote clone GoM GC234 001R 1.2.2.1.4.999 poor quality 347 seqs prokMSA_id:001075 AB007299 clone pOSA13. prokMSA_id:001076 AB007300 clone pOSA16. prokMSA_id:001077 AB007301 clone pOSA5. prokMSA_id:001078 AB007302 clone pOSA7. prokMSA_id:017501 AB055988 WSB-6 prokMSA_id:069041 AB055989 WSB-7 prokMSA_id:016502 AB056045 OS-20 prokMSA_id:034240 AB056050 OS-25 prokMSA_id:039057 AB056053 OS-28 prokMSA_id:038031 AB056056 OS-31 prokMSA_id:062872 AB077231 euryarchaeote clone:KuA21 prokMSA_id:062870 AB077232 euryarchaeote clone:KuA22 prokMSA_id:062871 AB077233 euryarchaeote clone:KuA23 prokMSA_id:044046 AB079479 clone:TOYO-18-Am prokMSA_id:079249 AB099992 sequences clone: IndA1-21 prokMSA_id:093738 AB119599 euryarchaeote clone:ESYB43 prokMSA_id:093466 AB119630 euryarchaeote clone:ESYB74 prokMSA_id:001170 AF052954 clone FIN654. prokMSA_id:071900 AF058722 crenarchaeote KBSCul7 prokMSA_id:071376 AF058723 crenarchaeote KBSCul9 prokMSA_id:073373 AF058725 crenarchaeote KBSNat1 prokMSA_id:001045 AF058727 clone KBSNat4. prokMSA_id:001046 AF058728 clone KBSNat11. prokMSA_id:045012 AF102692 crenarchaeote FRD0 small subunit prokMSA_id:054512 AF151301 marine crenarchaeote clone A1-010-1 and 23S prokMSA_id:074861 AF151302 marine crenarchaeote clone A1-010-2 and 23S prokMSA_id:054339 AF151303 marine crenarchaeote clone A1-010-3 and 23S prokMSA_id:054100 AF151304 marine crenarchaeote clone A1-010-4 and 23S prokMSA_id:054013 AF151305 marine crenarchaeote clone A2-200-1 and 23S prokMSA_id:053335 AF151306 marine crenarchaeote clone A2-200-2 and 23S prokMSA_id:054287 AF151307 marine crenarchaeote clone A2-200-3 and 23S prokMSA_id:053690 AF151308 marine crenarchaeote clone B-015-1 and 23S prokMSA_id:054018 AF151309 marine crenarchaeote clone B-015-2 and 23S prokMSA_id:053314 AF151310 marine crenarchaeote clone B-015-3 and 23S prokMSA_id:054497 AF151311 marine crenarchaeote clone M1-005-1 and 23S prokMSA_id:054060 AF151312 marine crenarchaeote clone M1-005-2 and 23S prokMSA_id:054206 AF151313 marine crenarchaeote clone M1-005-3 and 23S prokMSA_id:054296 AF151314 marine crenarchaeote clone M2-025-1 and 23S prokMSA_id:054802 AF151315 marine crenarchaeote clone M2-025-2 and 23S prokMSA_id:054649 AF151316 marine crenarchaeote clone M2-025-3 and 23S prokMSA_id:054143 AF151317 marine crenarchaeote clone M3-050-1 and 23S prokMSA_id:053855 AF151318 marine crenarchaeote clone M3-050-2 and 23S prokMSA_id:053817 AF151319 marine crenarchaeote clone M3-050-3 and 23S prokMSA_id:054218 AF151320 marine crenarchaeote clone M3-050-4 and 23S prokMSA_id:053807 AF151321 marine crenarchaeote clone M3-050-5 and 23S prokMSA_id:054270 AF151322 marine crenarchaeote clone M3-050-6 and 23S prokMSA_id:053499 AF151323 marine crenarchaeote clone M3-150-1 and 23S prokMSA_id:054415 AF151324 marine crenarchaeote clone M3-150-2 and 23S prokMSA_id:053785 AF151325 marine crenarchaeote clone M3-150-3 and 23S prokMSA_id:053265 AF151326 marine crenarchaeote clone M3-150-4 and 23S prokMSA_id:052946 AF151327 marine crenarchaeote clone M3-150-5 and 23S prokMSA_id:053092 AF151328 marine crenarchaeote clone M3-450-1 and 23S prokMSA_id:053081 AF151329 marine crenarchaeote clone M3-450-2 and 23S prokMSA_id:053156 AF151330 marine crenarchaeote clone M3-450-3 and 23S prokMSA_id:053591 AF151331 marine crenarchaeote clone M4-005-1 and 23S prokMSA_id:054474 AF151332 marine crenarchaeote clone M4-005-2 and 23S prokMSA_id:053705 AF151333 marine crenarchaeote clone M4-005-3 and 23S prokMSA_id:053405 AF151334 marine crenarchaeote clone M5-050-1 and 23S prokMSA_id:053836 AF151335 marine crenarchaeote clone M5-050-2 and 23S prokMSA_id:054906 AF151336 marine crenarchaeote clone M5-050-3 and 23S prokMSA_id:054217 AF151337 marine crenarchaeote clone M6-050-1 and 23S prokMSA_id:054154 AF151338 marine crenarchaeote clone M6-050-2 and 23S prokMSA_id:053031 AF151339 marine crenarchaeote clone M6-050-3 and 23S prokMSA_id:054382 AF151340 marine crenarchaeote clone M7-050-1 and 23S prokMSA_id:054825 AF151341 marine crenarchaeote clone M7-050-2 and 23S prokMSA_id:053540 AF151342 marine crenarchaeote clone M7-050-3 and 23S prokMSA_id:053183 AF151343 marine crenarchaeote clone M7-400-1 and 23S prokMSA_id:054671 AF151344 marine crenarchaeote clone M7-400-2 and 23S prokMSA_id:054899 AF151345 marine crenarchaeote clone M7-400-3 and 23S prokMSA_id:053507 AF151346 marine crenarchaeote clone M7-400-4 and 23S prokMSA_id:053729 AF151347 marine crenarchaeote clone M7-400-5 and 23S prokMSA_id:053449 AF151348 marine crenarchaeote clone M7-400-6 and 23S prokMSA_id:019388 AF180686 CRE-FL3a prokMSA_id:021009 AF180687 CRE-FL4a prokMSA_id:053362 AF180688 CRE-FL5a prokMSA_id:052589 AF180689 CRE-FL6a prokMSA_id:041468 AF180690 CRE-FL7a prokMSA_id:038432 AF180691 CRE-FL8a prokMSA_id:026589 AF180694 CRE-FL11a prokMSA_id:049133 AF180696 CRE-PA3a prokMSA_id:025411 AF180697 CRE-PA4a prokMSA_id:037796 AF180698 CRE-PA5a prokMSA_id:017782 AF180699 CRE-PA6a prokMSA_id:020860 AF180701 CRE-PA8a prokMSA_id:029932 AF180702 CRE-PA9a prokMSA_id:043450 AF180705 CRO-1a prokMSA_id:049355 AF180706 CRO-2a prokMSA_id:017779 AF180707 CRO-3a prokMSA_id:032990 AF180708 CRO-4a prokMSA_id:038037 AF180709 CRO-5a prokMSA_id:047226 AF180710 CRO-6a prokMSA_id:045146 AF180711 CRO-7a prokMSA_id:023962 AF180712 CRO-8a prokMSA_id:050148 AF180713 CRO-11a prokMSA_id:019705 AF180715 CRO-14a prokMSA_id:036313 AF180716 CR-PA1a prokMSA_id:074762 AF180717 CR-PA2a prokMSA_id:049652 AF180718 CR-PA4a prokMSA_id:038802 AF180720 CR-PA7a prokMSA_id:047164 AF180721 CR-PA8a prokMSA_id:040136 AF180722 CR-PA10a prokMSA_id:029830 AF180724 CR-PA13a prokMSA_id:024978 AF180725 CR-PA15a prokMSA_id:020920 AF180726 CR-PA16a prokMSA_id:073601 AF201365 crenarchaeote isolate DOURO11 prokMSA_id:074308 AF201366 crenarchaeote isolate DOURO12 prokMSA_id:016994 AF223124 crenarchaeote DS-5_1 prokMSA_id:071070 AF293600 crenarchaeote clone Cren21-2 prokMSA_id:071001 AF293601 crenarchaeote clone Cren21-23 prokMSA_id:032319 AF316803 Crater Lake CL500-AR1 prokMSA_id:031578 AF316804 Crater Lake CL500-AR12 prokMSA_id:040481 AF355841 33-FL83A98 prokMSA_id:034208 AF355842 33-FL37A98 prokMSA_id:049675 AF355843 33-FL40A98 prokMSA_id:032284 AF355844 33-P1A98 prokMSA_id:030034 AF355852 33-P40A98 prokMSA_id:036234 AF355874 33-FL110A98 prokMSA_id:052179 AF355876 33-FL112A98 prokMSA_id:040014 AF355877 33-FL69A98 prokMSA_id:038617 AF355878 33-P72A98 prokMSA_id:017583 AF355928 33-FL9A98 prokMSA_id:045304 AF355932 33-P2A98 prokMSA_id:036517 AF355934 33-P5A98 prokMSA_id:035012 AF355938 33-FL143A98 prokMSA_id:036126 AF355941 33-FL21A98 prokMSA_id:048321 AF355942 33-FL16A98 prokMSA_id:030577 AF355943 33-FL2A98 prokMSA_id:047267 AF355948 33-P2A99 prokMSA_id:022439 AF355949 33-P49A99 prokMSA_id:058239 AF357899 MN13BT4-85 prokMSA_id:058238 AF357900 MN13BT4-86 prokMSA_id:058237 AF357901 MN13BT4-87 prokMSA_id:058235 AF357902 MN13BT4-89 prokMSA_id:058236 AF357903 MN13BT4-91 prokMSA_id:055251 AF357904 MN13BT4-92 prokMSA_id:058231 AF357905 MN13BT4-93 prokMSA_id:058230 AF357907 MN13BT4-96 prokMSA_id:068288 AF361682 clone MN16BT2-71 prokMSA_id:068277 AF361692 clone MN13BT4-90 prokMSA_id:068271 AF361693 clone MN13BT4-97 prokMSA_id:037456 AF440711 marine crenarchaeote ARCT1-33 prokMSA_id:021802 AF458627 crenarchaeote 12_19d prokMSA_id:048753 AF458628 crenarchaeote 12_11d prokMSA_id:035960 AF458629 crenarchaeote 03_06c prokMSA_id:020170 AF458630 crenarchaeote 03_17c prokMSA_id:033039 AF458631 crenarchaeote 03_12a prokMSA_id:059385 AF458632 crenarchaeote 12_58h prokMSA_id:016832 AF458633 crenarchaeote 12_28g prokMSA_id:038156 AF458635 crenarchaeote 03_03a prokMSA_id:027892 AF458641 crenarchaeote 03_21d prokMSA_id:027319 AF473876 crenarchaeote t42K_28D prokMSA_id:026561 AF473877 crenarchaeote t3_12D prokMSA_id:039551 AF473878 crenarchaeote r-5_07D prokMSA_id:019375 AF473879 crenarchaeote r-5_04B prokMSA_id:070004 AF473880 crenarchaeote r-5_03B prokMSA_id:044350 AF473881 crenarchaeote r42K_25B prokMSA_id:028928 AF473882 crenarchaeote r42K_24B prokMSA_id:031270 AF473883 crenarchaeote r42K_30G prokMSA_id:033312 AF473884 crenarchaeote t3_14I prokMSA_id:020381 AF473885 crenarchaeote t42_15A prokMSA_id:031289 AF473886 crenarchaeote r42K_31J prokMSA_id:023559 AF473887 crenarchaeote r-5_08K prokMSA_id:049554 AF473888 crenarchaeote t3_11C prokMSA_id:020358 AF473889 crenarchaeote t3_10A prokMSA_id:035831 AF473890 crenarchaeote r42K_22A prokMSA_id:035693 AF473891 crenarchaeote r-5_02A prokMSA_id:029711 AF473892 crenarchaeote t42_16A prokMSA_id:045292 AF473893 crenarchaeote r-5_01A prokMSA_id:039947 AF473894 crenarchaeote t3_09A prokMSA_id:026449 AF473895 crenarchaeote t3_13A prokMSA_id:025717 AF473896 crenarchaeote r42K_23A prokMSA_id:036237 AF473897 crenarchaeote t42_20F prokMSA_id:068827 AF473899 euryarchaeote r42K_27C prokMSA_id:055461 AF506826 crenarchaeote clone 3-a3 prokMSA_id:066411 AF506827 crenarchaeote clone a-10a prokMSA_id:066410 AF506828 crenarchaeote clone a-9a prokMSA_id:066409 AF506829 crenarchaeote clone a-176a prokMSA_id:066406 AF506830 crenarchaeote clone a-195a prokMSA_id:066404 AF506831 crenarchaeote clone a-177a prokMSA_id:065594 AF512957 clone SUPA1 prokMSA_id:065593 AF512958 clone SUPA2 prokMSA_id:065591 AF512959 clone SUPA3 prokMSA_id:065590 AF512960 clone SUPA4 prokMSA_id:065592 AF512961 clone SUPA5 prokMSA_id:065589 AF512962 clone SUPA6 prokMSA_id:065588 AF512963 clone SUPA7 prokMSA_id:055860 AF512964 clone SUPA8 prokMSA_id:065586 AF512965 clone SUPA9 prokMSA_id:065587 AF512966 clone SUPA10 prokMSA_id:065584 AF512967 clone SUPA11 prokMSA_id:059411 AF540860 clone DP11u27 prokMSA_id:059400 AF540868 clone ME14-2 prokMSA_id:050905 AH004907 marine p712-12 prokMSA_id:036452 AH005082 marine pB1-118 5' region prokMSA_id:042558 AH005087 marine pB1-22 5' region prokMSA_id:072217 AJ006920 Crenarchaeote clone FFSC2 prokMSA_id:029944 AJ305084 63-A24 clone 63-A24 prokMSA_id:070280 AJ308001 clone DIE15 prokMSA_id:045227 AJ311422 maize rhizosphere c9_45Cr prokMSA_id:040710 AJ431194 crenarchaeote clone 2_17 prokMSA_id:088204 AJ567628 crenarchaeote clone MBAA31 prokMSA_id:089999 AJ567640 crenarchaeote clone MBAA59 prokMSA_id:093465 AJ582570 clone G3 prokMSA_id:032154 AY016469 Front Range soil crenarchaeote FRA0 prokMSA_id:020406 AY016470 Front Range soil crenarchaeote FRA1 prokMSA_id:048892 AY016480 Front Range soil crenarchaeote FRB27 prokMSA_id:052662 AY016487 Front Range soil crenarchaeote FRC0 prokMSA_id:032222 AY016495 Front Range soil crenarchaeote FRC38 prokMSA_id:033189 AY016497 Front Range soil crenarchaeote FRD0 prokMSA_id:029218 AY016500 Front Range soil crenarchaeote FRD25x2 prokMSA_id:036495 AY016502 Front Range soil crenarchaeote FRD32 prokMSA_id:049832 AY016506 Front Range soil crenarchaeote FRD9x2 prokMSA_id:046377 AY037653 soil clone S203 prokMSA_id:035058 AY037656 soil clone S223 prokMSA_id:023575 AY037657 soil clone S224 prokMSA_id:029546 AY037658 soil clone S273 prokMSA_id:018523 AY037659 soil clone S275 prokMSA_id:032851 AY037660 soil clone S276 prokMSA_id:022454 AY063678 clone RS0-23 prokMSA_id:029135 AY063682 clone RS0-27 prokMSA_id:035416 AY063689 clone RS500-4 prokMSA_id:016869 AY063703 clone RS500-18 prokMSA_id:067852 AY082452 crenarchaeote clone 44a-A1-1 prokMSA_id:072363 AY082453 crenarchaeote clone 44a-A1-12 prokMSA_id:064929 AY095814 CS4K-222 prokMSA_id:064921 AY095817 CS4K-235 prokMSA_id:065007 AY095842 ARCT2-45 prokMSA_id:059828 AY133355 clone BB2_228 prokMSA_id:076285 AY164290 crenarchaeote clone BLIA-1 prokMSA_id:055222 AY166037 clone FZ2bA176 prokMSA_id:055221 AY166038 clone FZ1aA64 prokMSA_id:055216 AY166044 clone FZ1aA60 prokMSA_id:055215 AY166045 clone FZ1aA67 prokMSA_id:055213 AY166047 clone FZ1aA160 prokMSA_id:055211 AY166050 clone FZ1aA152 prokMSA_id:055210 AY166051 clone Fz1aA52 prokMSA_id:055208 AY166052 clone FZ1aA164 prokMSA_id:055207 AY166054 clone FZ1aA157 prokMSA_id:055206 AY166055 clone Fz1aA19 prokMSA_id:055204 AY166056 clone FZ1aA54 prokMSA_id:055205 AY166057 clone FZ1aA22 prokMSA_id:055203 AY166058 clone FZ1aA230 prokMSA_id:055200 AY166061 clone FZ2aA22 prokMSA_id:055196 AY166065 clone FZ2aA6 prokMSA_id:055194 AY166067 clone FZ2aA10 prokMSA_id:055193 AY166068 clone FZ2aA12 prokMSA_id:055190 AY166071 clone FZ2aA39 prokMSA_id:055189 AY166072 clone FZ2aA69 prokMSA_id:055188 AY166073 clone FZ2aA18 prokMSA_id:055187 AY166074 clone FZ2aA19 prokMSA_id:055185 AY166076 clone FZ2aA24 prokMSA_id:055181 AY166080 clone FZ2bA220 prokMSA_id:055180 AY166081 clone FZ2bA109 prokMSA_id:055179 AY166083 clone FZ2bA67 prokMSA_id:055178 AY166084 clone FZ2bA118 prokMSA_id:055177 AY166085 clone FZ2bA62 prokMSA_id:055165 AY166097 clone FZ2bA102 prokMSA_id:055157 AY166105 clone FZ2bA206 prokMSA_id:055153 AY166109 clone FZ2bA20 prokMSA_id:055143 AY166118 clone FZ1aA2 prokMSA_id:078576 AY182063 clone FZ3aA9 prokMSA_id:079073 AY182064 clone FZ3aA22 prokMSA_id:078455 AY182090 clone FZ3bA117 prokMSA_id:078856 AY182107 clone FZ3bA55 prokMSA_id:078885 AY182114 clone FZ3bA102 prokMSA_id:079979 AY191891 clone BG1 prokMSA_id:096990 AY192628 clone Ar12-1 prokMSA_id:087091 AY262697 crenarchaeote clone LDA 1 prokMSA_id:086712 AY262698 crenarchaeote clone LDA 2 prokMSA_id:087573 AY262699 crenarchaeote clone LDA 3 prokMSA_id:087875 AY262700 crenarchaeote clone LDA 4 prokMSA_id:087535 AY262701 crenarchaeote clone LDA 5 prokMSA_id:085133 AY278077 crenarchaeote clone DAR3 prokMSA_id:086236 AY278102 crenarchaeote clone PET1-22 prokMSA_id:082993 AY278103 crenarchaeote clone PET1-26 prokMSA_id:084454 AY278104 crenarchaeote clone Pus4-16 prokMSA_id:090532 AY288357 crenarchaeote 97E-131-05 prokMSA_id:088214 AY288358 crenarchaeote 97D-131-10A prokMSA_id:089866 AY288361 crenarchaeote 97D-131-08 prokMSA_id:090477 AY288363 crenarchaeote 97D-235-02 prokMSA_id:088941 AY288364 crenarchaeote 97D-55-20A prokMSA_id:089623 AY288365 crenarchaeote 97D-55-01 prokMSA_id:089307 AY288366 crenarchaeote 97D-55-2A prokMSA_id:090718 AY288367 crenarchaeote 96C-235-8A prokMSA_id:088464 AY288368 crenarchaeote 96C-235-09 prokMSA_id:089288 AY288369 crenarchaeote 96C-235-5A prokMSA_id:088677 AY288370 crenarchaeote 96C-235-4B prokMSA_id:088840 AY288371 crenarchaeote 96C-131-12 prokMSA_id:090434 AY288372 crenarchaeote 96C-131-13 prokMSA_id:090745 AY288373 crenarchaeote 96C-131-06 prokMSA_id:088568 AY288374 crenarchaeote 96C-55-12 prokMSA_id:088325 AY288376 crenarchaeote 95B-55-6A prokMSA_id:090203 AY288377 crenarchaeote 95B-131-16H prokMSA_id:089528 AY288378 crenarchaeote 95B-131-01 prokMSA_id:091179 AY330647 crenarchaeote clone RISAM1-A prokMSA_id:091837 AY330648 crenarchaeote clone RISAM1+A prokMSA_id:091245 AY330649 crenarchaeote clone RISAM2-A prokMSA_id:091729 AY330650 crenarchaeote clone RISAM2+A prokMSA_id:091957 AY333320 isolate DGGE gel band Seq1Z0 prokMSA_id:091592 AY333321 isolate DGGE gel band Seq2Z0 prokMSA_id:093210 AY360478 clone BSA13-108m prokMSA_id:093551 AY360479 clone BSA14-89m prokMSA_id:001097 D88127 clone GU311. prokMSA_id:001112 U59970 clone pGrfA17. prokMSA_id:001113 U59971 clone pGrfA19. prokMSA_id:001114 U59972 clone pGrfA22. prokMSA_id:001115 U59973 clone pGrfA23. prokMSA_id:001116 U59974 clone pGrfA24. prokMSA_id:001117 U59975 clone pGrfA33. prokMSA_id:001118 U59976 clone pGrfA42. prokMSA_id:001119 U59977 clone pGrfA44. prokMSA_id:001120 U59978 clone pGrfA5. prokMSA_id:001121 U59979 clone pGrfA50. prokMSA_id:001122 U59980 clone pGrfA53. prokMSA_id:001123 U59981 clone pGrfA62. prokMSA_id:001124 U59987 clone pLemA8. prokMSA_id:001125 U59999 clone pGrfA14. prokMSA_id:001108 U68604 clone M17. prokMSA_id:001109 U68650 clone P17. prokMSA_id:001091 U78197 clone SB95-53. prokMSA_id:051051 U78201 crenarchaeote obtained from Santa Barbara Channel prokMSA_id:001137 U81529 str. p712-12. prokMSA_id:001136 U81530 str. p712-12. prokMSA_id:001150 U81536 str. p712-24. prokMSA_id:001149 U81537 str. p712-24. prokMSA_id:001096 U81541 clone p712-37. prokMSA_id:001031 U86464 str. pN1-10. prokMSA_id:001032 U86479 clone pN1-43. prokMSA_id:001110 U86483 clone pN1-56. prokMSA_id:001058 U86492 clone pB1-118. prokMSA_id:001057 U86493 clone pB1-118. prokMSA_id:001060 U86495 clone pB1-123. prokMSA_id:001059 U86496 clone pB1-123. prokMSA_id:001062 U86497 clone pB1-124. prokMSA_id:001061 U86498 clone pB1-124. prokMSA_id:001064 U86503 clone pB1-151. prokMSA_id:001063 U86504 clone pB1-151. prokMSA_id:001066 U86506 clone pB1-22. prokMSA_id:001065 U86507 unnamed organism. prokMSA_id:001068 U86509 clone pB1-47. prokMSA_id:001067 U86510 clone pB1-47. prokMSA_id:001070 U86513 clone pB1-53. prokMSA_id:001069 U86514 clone pB1-53. prokMSA_id:001072 U86515 clone pB1-80. prokMSA_id:001071 U86516 clone pB1-80. prokMSA_id:001074 U86518 clone pB1-92. prokMSA_id:001073 U86519 clone pB1-92. 1.2.2.2 ENVIRONMENTAL_CLONE_PJP89 8 seqs 1.2.2.2.001 OTU 1 seq prokMSA_id:001171 L25305 Mud Volcano area of Yellowstone NP "Black Pool" hot spring 1.2.2.2.002 OTU 1 seq prokMSA_id:038903 AF005766 Arc.201 1.2.2.2.003 OTU 1 seq prokMSA_id:055150 AY166112 clone FZ2bA211 1.2.2.2.004 OTU 1 seq prokMSA_id:063276 AF523942 clone ARCP1-35 1.2.2.2.005 OTU 1 seq prokMSA_id:078894 AB094538 clone:OHKA4.25 1.2.2.2.999 poor quality 3 seqs prokMSA_id:044161 AB056047 OS-22 prokMSA_id:032715 AF458644 crenarchaeote 12_30a prokMSA_id:055224 AY166035 clone FZ2bA201 1.2.3 ENVIRONMENTAL_CLONE_PJP27_SUBGROUP 7 seqs 1.2.3.001 OTU 3 seqs prokMSA_id:049873 AF255604 Korarchaeota SRI-306 prokMSA_id:019860 AF311362 korarchaeote OlA-431 prokMSA_id:001173 L25303 Mud Volcano area of Yellowstone NP "Black Pool" hot spring 1.2.3.002 OTU 2 seqs prokMSA_id:051224 AF176347 korarchaeote pBA5 prokMSA_id:001172 L25852 Mud Volcano area of Yellowstone NP "Black Pool" hot spring 1.2.3.999 poor quality 2 seqs prokMSA_id:030207 AF311360 korarchaeote OlA-11 prokMSA_id:016608 AF411237 korarchaeote clone ST89 2 BACTERIA 80781 seqs 2.1 THERMOPHILIC_OXYGEN_REDUCERS 182 seqs 2.1.001 OTU 1 seq prokMSA_id:001215 AF018191 clone env.OPS 6. 2.1.004 OTU 26 seqs prokMSA_id:001210 AB026268 Hydrogenobacter subterranea str. HGP1. prokMSA_id:001207 AF027104 clone OPS132. prokMSA_id:001213 AF027105 clone OPS165. prokMSA_id:038815 AF255599 Aquificales str. SRI-48 prokMSA_id:051871 AF301907 Aquificales pIce1 prokMSA_id:025858 AF301908 Aquificales str. SS5H1 prokMSA_id:023410 AF361217 Thermocrinis sp. clone SUBT-1 prokMSA_id:060624 AF407673 clone Sed01 prokMSA_id:060621 AF407675 clone Y04 prokMSA_id:060606 AF407692 clone R57 prokMSA_id:070459 AF453505 Aquificales clone pKA prokMSA_id:001174 AJ005640 Thermocrinis ruber str. OC 1/4. prokMSA_id:022567 AJ278895 Thermocrinis albus strain HI 11/12 prokMSA_id:035025 AJ320213 Hydrogenobacter sp. PZ2AL1B strain PZ2AL1B prokMSA_id:016683 AJ320214 Hydrogenobacter sp. MV4L2B strain MV4L2B prokMSA_id:018011 AJ320215 Hydrogenobacter sp. PA14 strain PA16 prokMSA_id:033986 AJ320216 Hydrogenobacter sp. BB4L1B strain BB4L1B prokMSA_id:046163 AJ320217 Hydrogenobacter sp. UZ27L2A strain UZ27L2A prokMSA_id:031233 AJ320218 Hydrogenobacter sp. GV8L3A strain GV8L3A prokMSA_id:021804 AJ320219 Thermocrinis sp. P2L2B strain P2L2B prokMSA_id:036754 AJ320220 Thermocrinis sp. UZ23L3A strain UZ23L3A prokMSA_id:052320 AJ320221 Thermocrinis sp. G3L1B strain G3L1B prokMSA_id:038669 AJ320222 Thermocrinis sp. H7L1B strain H7L1B prokMSA_id:039236 AY007593 Hydrogenobacter sp. IT-7242 prokMSA_id:067859 AY082371 Bacillus sp. clone DGG36 prokMSA_id:001211 U05661 str. EM 17. 2.1.005 OTU 6 seqs prokMSA_id:001189 AF068782 VC2.1 bac39 complete prokMSA_id:001194 AF068791 VC2.1 Bac10 complete prokMSA_id:001195 AF068792 VC2.1 Bac11 complete prokMSA_id:001196 AF068801 VC2.1 Bac27 complete prokMSA_id:001197 AF068802 VC2.1 Bac28 complete prokMSA_id:001198 AF068807 VC2.1 Bac33 complete 2.1.009 OTU 16 seqs prokMSA_id:083524 AB095169 Aquifex sp. Aq-1-70-1%O2 prokMSA_id:084742 AB095170 Aquifex sp. Aq-1-85-1%O2 prokMSA_id:082818 AB095171 Aquifex sp. Aq-1-85-NO3 prokMSA_id:085552 AB095172 Aquifex sp. Aq-365-70-1%O2 prokMSA_id:083172 AB095173 Aquifex sp. Aq-365-85-1%O2 prokMSA_id:082720 AB095174 Aquifex sp. Aq-365-85-NO3 prokMSA_id:086227 AB095175 Aquifex sp. Aq-I-70-1%O2 prokMSA_id:086369 AB095176 Aquifex sp. Aq-S-70-1%O2 prokMSA_id:053595 AE000657 Aquifex aeolicus complete genome prokMSA_id:051605 AE000709 Aquifex aeolicus section 41 of 109 of the complete genome prokMSA_id:038306 AE000751 Aquifex aeolicus section 83 of 109 of the complete genome prokMSA_id:030117 AF393377 Aquificales str. CIR3017HO90 prokMSA_id:039217 AJ309733 Aquifex aeolicus prokMSA_id:032822 AJ320223 Aquifex sp. Gri14L3B strain Gri14L3B prokMSA_id:001187 M83548 Aquifex pyrophilus prokMSA_id:051070 NC_000918 Aquifex aeolicus complete genome 2.1.011 OTU 48 seqs prokMSA_id:001190 AB005735 clone GANI 3. prokMSA_id:001188 AB005736 clone GANI 4. prokMSA_id:001191 AB005737 clone NAK 9. prokMSA_id:001192 AB005738 clone NAK 14. prokMSA_id:034570 AB071324 Aquificales str. HGM-K1 prokMSA_id:070820 AB071325 Aquificales str. HGM-K3 prokMSA_id:046951 AB071326 Aquificales clone:pHAuB-D prokMSA_id:067475 AB073123 Aquificales clone:YE111 prokMSA_id:067476 AB073124 Aquificales clone:YE12 prokMSA_id:067473 AB073125 Aquificales clone:YE2101 prokMSA_id:067474 AB073126 Aquificales clone:YE2921 prokMSA_id:067477 AB073127 Aquificales clone:YE31422 prokMSA_id:067472 AB073128 Aquificales clone:YE3152 prokMSA_id:067470 AB073129 Aquificales clone:YE32022 prokMSA_id:056574 AB073130 Aquificales clone:YUM915 prokMSA_id:067471 AB073131 Aquificales clone:YUMB424 prokMSA_id:001182 AF018186 clone env.OPS 1. prokMSA_id:001183 AF018189 clone env.OPS 4. prokMSA_id:001184 AF018192 clone env.OPS 7. prokMSA_id:001186 AF018196 clone env.OPS 14. prokMSA_id:001177 AF027098 clone OPB13. prokMSA_id:001178 AF027099 clone OPS2. prokMSA_id:001179 AF027101 clone OPS55. prokMSA_id:042953 AF113542 Aquificales pBB prokMSA_id:039523 AF255597 Aquificales str. SRI-240 prokMSA_id:044227 AF255598 Aquificales str. SRI-40 prokMSA_id:038487 AF445658 Aquificales clone SM1B11 prokMSA_id:038441 AF445696 Aquificales clone SM1G02 prokMSA_id:049376 AF445697 Aquificales clone SM1G03 prokMSA_id:017781 AF445734 Aquificales clone SM2G01 prokMSA_id:027456 AF445736 Aquificales clone SM2G04 prokMSA_id:025727 AF445739 Aquificales clone SM2G07 prokMSA_id:064268 AF453506 Aquificales clone pKB prokMSA_id:064266 AF453508 Aquificales clone pAz4 prokMSA_id:072765 AF453509 Aquificales clone pTthxG5 prokMSA_id:060550 AF507961 Aquificales YNP-SS1 prokMSA_id:071370 AF528192 Aquificaceae Az-Fu1 prokMSA_id:073632 AY145644 Aquificales FL10F09 prokMSA_id:069835 AY145662 Aquificales FL12F06 prokMSA_id:087649 AY293406 Aquificales clone Lig060299-6.8 prokMSA_id:086748 AY293407 Aquificales clone Lig060299-6.17 prokMSA_id:087924 AY293408 Aquificales clone Lig060299-7.12 prokMSA_id:087715 AY293409 Aquificales clone Lig060299-7.17 prokMSA_id:087808 AY293411 Aquificales clone Lig060299-8.7 prokMSA_id:086794 AY293412 Aquificales clone Lig060299-8.13 prokMSA_id:087990 AY293465 Aquificales clone FL05F05 prokMSA_id:087844 AY293467 Aquificales clone FL05H02 prokMSA_id:086807 AY293475 Aquificales clone FL06E07 2.1.012 OTU 6 seqs prokMSA_id:026906 AF325179 clone B5 prokMSA_id:043828 AJ320225 Hydrogenobaculum sp. NOR3L3B strain NOR3L3B prokMSA_id:080518 AY193209 Aquificales clone N10A1 prokMSA_id:080245 AY193210 Aquificales clone N10A2 prokMSA_id:088888 AY268103 Hydrogenobaculum acidophilum H55 prokMSA_id:001176 D16296 Hydrogenobacter acidophilus str. 3H-1. 2.1.013 OTU 7 seqs prokMSA_id:064362 AB086419 Persephonella hydrogenophila prokMSA_id:030394 AF188332 Persephonella marina prokMSA_id:063452 AF385630 Persephonella guaymasensis prokMSA_id:022382 AF393378 Aquificales str. CIR30126 prokMSA_id:029654 AF393379 Aquificales str. CIR30173 prokMSA_id:070561 AF507959 Persephonella sp. MAR10202 prokMSA_id:060551 AF507960 Persephonella sp. MAR9703 2.1.014 OTU 1 seq prokMSA_id:032287 AJ292525 Hydrogenothermus marinus 2.1.015 OTU 1 seq prokMSA_id:032720 AF402979 Aquificales clone 2.1.016 OTU 1 seq prokMSA_id:039591 AJ320224 Aquifex sp. Ob6 strain Ob6 2.1.017 OTU 1 seq prokMSA_id:079191 AJ431258 Coprothermobacter sp. Dex80-3 strain Dex80-3 2.1.018 OTU 1 seq prokMSA_id:094432 AB120294 Hydrogenivirga caldolitus 2.1.999 poor quality 67 seqs prokMSA_id:001200 AB000684 clone 2 of cluster I. prokMSA_id:001212 AB000685 clone 3 of cluster I. prokMSA_id:001201 AB000686 clone 4 of cluster I. prokMSA_id:001202 AB000687 clone 7 of cluster I. prokMSA_id:001203 AB000688 clone 12 of cluster I. prokMSA_id:001204 AB000689 clone 38 of cluster I. prokMSA_id:001205 AB000690 clone 47 of cluster I. prokMSA_id:001206 AB000691 clone 77 of cluster I. prokMSA_id:001193 AB007317 clone pOWB1. prokMSA_id:040946 AB075788 prokMSA_id:025052 AB075794 prokMSA_id:073617 AB079462 clone:TOYO-1-A prokMSA_id:026435 AB079469 clone:TOYO-8-C prokMSA_id:063138 AB081524 clone:YSa prokMSA_id:063135 AB081528 clone:YSe prokMSA_id:060796 AB090354 clone:NAB-RT-1 prokMSA_id:060797 AB090355 clone:NAB-RT-2 prokMSA_id:084514 AB096621 clone: SUIYO-E8 prokMSA_id:086296 AB096622 clone: SUIYO-E9 prokMSA_id:001175 AF018190 clone env.OPS 5. prokMSA_id:001185 AF018194 clone env.OPS 10. prokMSA_id:001180 AF027102 clone OPT11. prokMSA_id:001181 AF027103 clone OPT20. prokMSA_id:001214 AF027106 clone OPT14. prokMSA_id:049310 AF311353 Aquificales str. OlB-353 prokMSA_id:029856 AF311357 Aquificales str. OlB-6 prokMSA_id:045804 AF311358 Aquificales str. OlB-21 prokMSA_id:017746 AF446241 Aquificales Lig060299-11.7 prokMSA_id:072911 AY145671 Aquificales CD21H01 prokMSA_id:070031 AY145672 Aquificales CD21H06 prokMSA_id:079629 AY191869 Hydrogenobaculum sp. clone B4 prokMSA_id:080422 AY191870 Hydrogenobaculum sp. clone B23 prokMSA_id:080795 AY191871 Hydrogenobaculum sp. clone B5 prokMSA_id:080788 AY191873 Hydrogenobaculum sp. clone B156 prokMSA_id:079603 AY191874 Hydrogenobaculum sp. clone B182 prokMSA_id:079705 AY191875 Hydrogenobaculum sp. clone B165 prokMSA_id:079889 AY193010 Aquificales clone N10A3 prokMSA_id:079726 AY193011 Aquificales clone N10A4 prokMSA_id:079834 AY193012 Aquificales clone N10A5 prokMSA_id:080299 AY193013 Aquificales clone N10A6 prokMSA_id:080168 AY193014 Aquificales clone N10A7 prokMSA_id:087999 AY293410 Aquificales clone Lig060299-8.3 prokMSA_id:087884 AY293421 Aquificales clone FL01D09 prokMSA_id:088024 AY293422 Aquificales clone FL01D10 prokMSA_id:087879 AY293423 Aquificales clone FL01D11 prokMSA_id:087757 AY293424 Aquificales clone FL01E02 prokMSA_id:088010 AY293425 Aquificales clone FL01E07 prokMSA_id:086844 AY293426 Aquificales clone FL01G05 prokMSA_id:087082 AY293427 Aquificales clone FL01H03 prokMSA_id:087247 AY293428 Aquificales clone SM prokMSA_id:086760 AY293429 Aquificales clone FL01H12 prokMSA_id:087731 AY293433 Aquificales clone FL02C12 prokMSA_id:087709 AY293434 Aquificales clone FL2D01 prokMSA_id:087982 AY293454 Aquificales clone FL05A06 prokMSA_id:087537 AY293455 Aquificales clone FL05B02 prokMSA_id:087405 AY293456 Aquificales clone FL05B03 prokMSA_id:087094 AY293457 Aquificales clone FL05B04 prokMSA_id:087505 AY293458 Aquificales clone FL05B08 prokMSA_id:087386 AY293464 Aquificales clone FL05E10 prokMSA_id:087699 AY293468 Aquificales clone FL05H04 prokMSA_id:086967 AY293473 Aquificales clone FL06E05 prokMSA_id:087051 AY293474 Aquificales clone FL06E06 prokMSA_id:087013 AY293478 Aquificales clone FL06G10 prokMSA_id:087642 AY293532 Aquificales clone FL13H06 prokMSA_id:001209 Z30189 Hydrogenobacter thermophilus str. T3. prokMSA_id:001208 Z30214 Hydrogenobacter thermophilus str. TK-6 . prokMSA_id:001199 Z30242 Calderobacterium hydrogenophilum str. Z-829 . 2.2 THERMOTOGALES 89 seqs 2.2.1 PETROTOGA_GROUP 7 seqs 2.2.1.001 OTU 4 seqs prokMSA_id:017828 AJ311702 Petrotoga siberica strain SL25T prokMSA_id:051557 AJ311703 Petrotoga olearia strain SL24T prokMSA_id:069492 AY125964 Petrotoga mexicana prokMSA_id:001216 Y15479 Petrotoga mobilis str. SJ95 DSM 10674 . 2.2.1.999 poor quality 3 seqs prokMSA_id:074261 AF220348 str. vp56 prokMSA_id:072090 AF220349 str. vp424 prokMSA_id:001217 L10657 Petrotoga miotherma str. 42-6 ATCC 51224 . 2.2.2 GEOTOGA_GROUP 10 seqs 2.2.2.002 OTU 2 seqs prokMSA_id:001218 L10658 Geotoga petraea str. T5 ATCC 51226 . prokMSA_id:001219 L10659 Geotoga subterranea str. CC-1 ATCC 51225 . 2.2.2.004 OTU 7 seqs prokMSA_id:018489 AF326121 Thermotogales str. KA3 prokMSA_id:001220 AJ250439 str. MV1075. prokMSA_id:074095 AJ300502 Thermotogales sp. AM1110 isolate AM1110 prokMSA_id:074601 AJ300503 Thermotogales sp. AM1111 isolate AM1111 prokMSA_id:073285 AJ300504 Thermotogales sp. AM1112 isolate AM1112 prokMSA_id:072776 AJ300505 Thermotogales sp. AM1113 isolate AM1113 prokMSA_id:079381 AJ431249 Thermotogales str. Dex60-32 strain Dex60-32 2.2.2.005 OTU 1 seq prokMSA_id:066261 AF509468 Geotoga aestuarianus strain T3B 2.2.3 FERVIDOBACTERIUM_GROUP 18 seqs 2.2.3.001 OTU 1 seq prokMSA_id:001227 Z49117 Fervidobacterium gondwanense str. AB39 ACM 5017 . 2.2.3.002 OTU 4 seqs prokMSA_id:001224 AF027075 clone OPS196. prokMSA_id:032030 AF255593 Thermotogales sp. SRI-251 prokMSA_id:018702 AF434670 Fervidobacterium islandicum strain AW-1 prokMSA_id:071035 AY151268 Fervidobacterium sp. YNP 2.2.3.003 OTU 1 seq prokMSA_id:001223 AJ237665 Caldotoga fontana str. B4. 2.2.3.004 OTU 1 seq prokMSA_id:031971 AF232923 MS9 2.2.3.999 poor quality 11 seqs prokMSA_id:025477 A61579 1 from Patent WO9710342 prokMSA_id:063133 AB081526 clone:YSc prokMSA_id:062866 AB089185 clone:YSf prokMSA_id:001225 AF027076 clone OPS69B. prokMSA_id:028116 AF392750 clone LBF4 prokMSA_id:052063 AJ298266 SCBP-F13 prokMSA_id:079884 AY193089 Thermotogales prokMSA_id:001221 M59176 Fervidobacterium islandicum str. H-21 DSM 5733 . prokMSA_id:001228 M59177 Fervidobacterium nodosum str. Rt 17-B1 ATCC 35602 . prokMSA_id:001226 U37021 Thermopallium natronophilum DSM 9460. prokMSA_id:001222 X91822 Thermopallium natronophilum DSM 9460. 2.2.4 THERMOSIPHO_GROUP 11 seqs 2.2.4.001 OTU 7 seqs prokMSA_id:001231 AB024932 Thermosipho IHB1 str. IHB1. prokMSA_id:089466 AB107770 Thermosipho sp. FD1 prokMSA_id:042520 AF231727 Thermosipho sp. TBA5 prokMSA_id:083498 AF491334 Thermosipho ferriphilus prokMSA_id:040837 AJ272022 Thermosipho sp. DSM 13256 prokMSA_id:050206 AJ272023 Thermosipho sp. DSM 6568 strain DSM 6568 RI19.B2 prokMSA_id:090392 AJ577471 Thermosipho atlanticus strain DV1140 2.2.4.002 OTU 1 seq prokMSA_id:001230 Z70248 Thermosipho melanesiensis str. BI429 CIP 104789 . 2.2.4.003 OTU 1 seq prokMSA_id:072302 AJ419874 Thermosipho sp. MV1063 2.2.4.004 OTU 1 seq prokMSA_id:079590 AJ431248 Thermotogales str. BHI80-139 strain BHI80-139 2.2.4.999 poor quality 1 seq prokMSA_id:001229 M83140 Thermosipho africanus str. OB7 DSM 5309 . 2.2.5 THERMOTOGA_GROUP 10 seqs 2.2.5.001 OTU 1 seq prokMSA_id:001235 U89768 Thermotoga hypogea SEBR 7054 . 2.2.5.002 OTU 3 seqs prokMSA_id:062474 AF355615 Thermotoga sp. TMO complete prokMSA_id:001233 U22664 Thermotoga subterranea str. SL1 DSM 9912. prokMSA_id:001234 X80790 Thermotoga elfii str. SERB 6459 DSM 9442. 2.2.5.003 OTU 1 seq prokMSA_id:038910 AB039769 Thermotoga thermarum 2.2.5.004 OTU 1 seq prokMSA_id:074652 AF255601 SRI-24 2.2.5.005 OTU 1 seq prokMSA_id:088247 AY297987 clone TA55_Ba_141 2.2.5.999 poor quality 3 seqs prokMSA_id:070942 AF364920 clone clB12 prokMSA_id:074138 AF364926 clone clI22 prokMSA_id:001232 NONE Thermotoga thermarum str. LA3. 2.2.6 TT.MARITIMA_GROUP 23 seqs 2.2.6.001 OTU 1 seq prokMSA_id:001240 AF027045 clone OPB14. 2.2.6.002 OTU 4 seqs prokMSA_id:001239 AF058000 unnamed organism. prokMSA_id:039585 AF338765 clone J prokMSA_id:077293 AF482446 clone R5p5 prokMSA_id:077438 AF482447 clone R6b1 2.2.6.003 OTU 13 seqs prokMSA_id:048407 AB027016 Thermotoga sp. RKU-1 prokMSA_id:046327 AB027017 Thermotoga sp. RKU-10 isolate:RKU-10 prokMSA_id:041353 AB039768 Thermotoga neapolitana prokMSA_id:035101 AJ401016 Thermotoga neapolitana strain NES prokMSA_id:072408 AJ401017 Thermotoga maritima strain SL7 prokMSA_id:027647 AJ401019 Thermotoga sp. RQ2 strain RQ2 prokMSA_id:032773 AJ401020 Thermotoga neapolitana strain LA10 prokMSA_id:024284 AJ401021 Thermotoga maritima strain FJSS3-B.1 prokMSA_id:050916 AJ401022 Thermotoga sp. SG1 strain SG1 prokMSA_id:040929 AJ401023 Thermotoga sp. RQ7 strain RQ7 prokMSA_id:070547 AJ401024 Thermotoga neapolitana strain LA4 prokMSA_id:001236 M21774 Thermotoga maritima str. MSB8 DSM 3109 . prokMSA_id:049474 NC_000853 Thermotoga maritima complete genome 2.2.6.004 OTU 1 seq prokMSA_id:078865 AY181052 clone 1026B241 2.2.6.999 poor quality 4 seqs prokMSA_id:001237 AB003436 str. Kusaya gravy. prokMSA_id:001238 AB003439 str. Kusaya gravy. prokMSA_id:041464 AJ401018 Thermotoga sp. KOL6 strain KOL6 prokMSA_id:087102 AY261392 clone RFLP U5 2.2.7 ENVIRONMENTAL_CLONE_OPB7_GROUP 10 seqs 2.2.7.001 OTU 1 seq prokMSA_id:001248 AB011350 clone TUG22. 2.2.7.002 OTU 5 seqs prokMSA_id:001243 AF027071 clone OPB7. prokMSA_id:001244 AF027072 clone OPB85. prokMSA_id:001245 AF027073 clone OPS49A. prokMSA_id:001246 AF027074 clone OPS66. prokMSA_id:035305 AF255594 Thermotogales sp. SRI-15 2.2.7.003 OTU 1 seq prokMSA_id:001241 U05660 str. EM 3. 2.2.7.004 OTU 1 seq prokMSA_id:035729 AF352534 clone QL4-2 2.2.7.999 poor quality 2 seqs prokMSA_id:001247 AB011310 clone MUG18. prokMSA_id:001242 AF018193 clone env.OPS 8. 2.3 CTM.PROTEOLYTICUS_GROUP 2 seqs 2.3.001 OTU 1 seq prokMSA_id:001250 X69335 Coprothermobacter proteolyticus str. BT ATCC 35245 . 2.3.002 OTU 1 seq prokMSA_id:001249 Y08935 Coprothermobacter platensis str. 3R DSM 11748 . 2.4 STRAIN.EM_19 4 seqs 2.4.001 OTU 4 seqs prokMSA_id:038969 AF352535 clone BH92 prokMSA_id:041552 AF352536 clone QL4-43 prokMSA_id:016693 AF352537 clone BH81 complete prokMSA_id:001251 U05662 str. EM 19. 2.5 ENVIRONMENTAL_CLONE_OPB45_GROUP 41 seqs 2.5.001 OTU 1 seq prokMSA_id:001260 AJ001049 Desulfurobacterium thermolithotrophum str. BSA. 2.5.002 OTU 3 seqs prokMSA_id:070598 AF334601 Thermodesulfobacterium thermophilum strain DSM 1276 prokMSA_id:038674 AF418169 Thermodesulfobacterium commune DSM 2178 prokMSA_id:001259 X96725 Thermodesulfobacterium hveragerdicum str. JSP. 2.5.003 OTU 9 seqs prokMSA_id:001256 AF027093 clone OPT4. prokMSA_id:001258 AF027095 clone OPS7. prokMSA_id:001252 AF027096 clone OPB45. prokMSA_id:072666 AF255595 Thermodesulfotobacterium sp. SRI-27 prokMSA_id:039066 AF255596 Thermodesulfotobacterium sp. SRI-93 prokMSA_id:042031 AF332514 Thermodesulfobacterium hydrogeniphilum prokMSA_id:043680 AF352533 Thermodesulfobacterium sp. clone BSpN50 complete prokMSA_id:027454 AF411013 Geothermobacterium ferrireducens strain FW-1a prokMSA_id:067861 AY082369 Thermodesulfobacteriaceae clone DGG19 2.5.004 OTU 1 seq prokMSA_id:001255 AF142903 clone ORGANIC-1. 2.5.005 OTU 2 seqs prokMSA_id:001253 AF027028 clone OPS67. prokMSA_id:001254 AF027029 clone OPS68. 2.5.006 OTU 1 seq prokMSA_id:020379 AF424444 candidate division OP11 MERTZ_21CM_23 2.5.007 OTU 1 seq prokMSA_id:037279 AF424438 candidate division OP11 MERTZ_2CM_148 2.5.008 OTU 1 seq prokMSA_id:069660 AF211306 CE59 2.5.009 OTU 1 seq prokMSA_id:052699 AF393376 Thermodesulfobacterium sp. CIR29812 2.5.010 OTU 1 seq prokMSA_id:065699 AF507685 soil clone S079 2.5.011 OTU 2 seqs prokMSA_id:075131 AY164343 clone ALIB-30 prokMSA_id:076679 AY164385 clone BLIB-77 2.5.012 OTU 1 seq prokMSA_id:075997 AY164453 clone ULIB-89 2.5.999 poor quality 17 seqs prokMSA_id:045845 AB075790 prokMSA_id:074726 AB075791 prokMSA_id:020844 AB075797 prokMSA_id:018590 AB075798 prokMSA_id:035328 AB079475 clone:TOYO-14-Bm prokMSA_id:068485 AB081521 clone:NAB28 prokMSA_id:063136 AB081527 clone:YSd prokMSA_id:063134 AB081529 clone:YSf prokMSA_id:001257 AF027094 clone OPT53. prokMSA_id:072133 AF047563 Candidate division OP11 clone OPd16 prokMSA_id:026913 AF469387 clone 33-PA105B98 prokMSA_id:057266 AJ518211 clone Mul2P1-76 prokMSA_id:080344 AY193107 clone DA75 prokMSA_id:080359 AY193109 clone DA3 prokMSA_id:083502 AY226195 clone ABBB-18 prokMSA_id:001262 L10662 Thermodesulfobacterium commune str. YSRA-1 ATCC 33708 . prokMSA_id:001261 X67091 Synechococcus lividus str. y-7c7b-S. 2.6 STR.SBR2095 1 seq 2.6.999 poor quality 1 seq prokMSA_id:001263 X84625 str. SBR2095. 2.7 GREEN_NON-SULFUR_BACTERIA_AND_RELATIVES 732 seqs 2.7.1 CHLOROFLEXUS_SUBDIVISION 488 seqs 2.7.1.1 CHLOROFLEXUS_ASSEMBLAGE 310 seqs 2.7.1.1.001 OTU 1 seq prokMSA_id:001282 M34115 Thermomicrobium roseum ATCC 27502 . 2.7.1.1.002 OTU 2 seqs prokMSA_id:074629 AF445672 green nonsulfur clone SM1D03 prokMSA_id:001275 L04675 Heliothrix oregonensis str. F1. 2.7.1.1.003 OTU 1 seq prokMSA_id:001266 AF039293 Herpetosiphon geysericola ATCC 23076 . 2.7.1.1.004 OTU 1 seq prokMSA_id:016384 AF421744 Chloroflexaceae clone Fairy_3 2.7.1.1.006 OTU 17 seqs prokMSA_id:072831 AJ308498 Chloroflexus sp. 396-1 strain 396-1 prokMSA_id:069106 AJ421646 clone MS4 prokMSA_id:069504 AJ421648 clone MS6 prokMSA_id:071963 AJ421653 clone MS20 prokMSA_id:069414 AJ421668 clone MS51 prokMSA_id:095922 AY349519 clone JC2701R_8 prokMSA_id:098727 AY349524 clone JC2701R_7 prokMSA_id:095968 AY349532 clone JC2701R_6 prokMSA_id:097203 AY349555 clone JC2701R_77 prokMSA_id:098672 AY349556 clone JC2701R_82 prokMSA_id:095652 AY349557 clone JC2701R_84 prokMSA_id:097331 AY349558 clone JC2701R_78 prokMSA_id:098750 AY349559 clone JC2701R_79 prokMSA_id:097582 AY349560 clone JC2701R_81 prokMSA_id:097900 AY349572 clone JC2702W_21 prokMSA_id:096084 AY349577 clone JC2702W_32 prokMSA_id:098562 AY349581 clone JC2702W_29 2.7.1.1.007 OTU 9 seqs prokMSA_id:028036 AJ308497 Halotolerant P4-I-0 strain P4-I-0 clone A prokMSA_id:048632 AJ309582 Chloroflexaceae group clone P7-C08 prokMSA_id:048434 AJ309583 Chloroflexaceae group clone P7-D04 prokMSA_id:029845 AJ309584 Chloroflexaceae group clone P7-F07 prokMSA_id:036884 AJ309585 Chloroflexaceae group clone P7-G07 prokMSA_id:035789 AJ309586 Chloroflexaceae group clone P7-H05 prokMSA_id:070192 AJ309602 Chloroflexaceae group clone DGGE band P7.2 prokMSA_id:033673 AJ309607 Chloroflexaceae group clone P4-C01 prokMSA_id:017159 AJ309643 Chloroflexaceae group clone P6-B12 2.7.1.1.012 OTU 1 seq prokMSA_id:018466 AF421747 Chloroflexaceae clone Hs2_3 2.7.1.1.013 OTU 2 seqs prokMSA_id:018906 AJ309574 Chloroflexaceae group clone P2-A12 prokMSA_id:026378 AJ309587 Chloroflexaceae group clone DGGE band P2.2 2.7.1.1.014 OTU 5 seqs prokMSA_id:039841 AJ309621 Chloroflexaceae group clone P4-G04 prokMSA_id:018931 AJ309624 Chloroflexaceae group clone P4-H10 prokMSA_id:048675 AJ309640 Chloroflexaceae group clone P5-H09 prokMSA_id:035587 AJ309650 Chloroflexaceae group clone P6-D12 prokMSA_id:043344 AJ309651 Chloroflexaceae group clone P6-E03 2.7.1.1.016 OTU 1 seq prokMSA_id:020892 AJ420142 Sphaerobacter thermophilus strain DSM 20745T 2.7.1.1.017 OTU 2 seqs prokMSA_id:074088 AJ309609 Chloroflexaceae group clone P4-C04 prokMSA_id:020996 AJ309636 Chloroflexaceae group clone P5-F09 2.7.1.1.018 OTU 7 seqs prokMSA_id:026292 AJ309575 Chloroflexaceae group clone P2-B10 prokMSA_id:038011 AJ309577 Chloroflexaceae group clone P2-F10 prokMSA_id:043200 AJ309604 Chloroflexaceae group clone P4-A10 prokMSA_id:041260 AJ309606 Chloroflexaceae group clone P4-B04 prokMSA_id:033359 AJ309619 Chloroflexaceae group clone P4-F10 prokMSA_id:071792 AJ309622 Chloroflexaceae group clone P4-H03 prokMSA_id:052586 AJ309632 Chloroflexaceae group clone P5-E08 2.7.1.1.019 OTU 2 seqs prokMSA_id:021812 AJ309616 Chloroflexaceae group clone P4-E04 prokMSA_id:047113 AJ309630 Chloroflexaceae group clone P5-E06 2.7.1.1.020 OTU 4 seqs prokMSA_id:034742 AJ309608 Chloroflexaceae group clone P4-C02 prokMSA_id:040410 AJ309613 Chloroflexaceae group clone P4-D10 prokMSA_id:041159 AJ309615 Chloroflexaceae group clone P4-E02 prokMSA_id:022347 AJ309617 Chloroflexaceae group clone P4-E10 2.7.1.1.023 OTU 6 seqs prokMSA_id:038595 AJ309612 Chloroflexaceae group clone P4-D04 prokMSA_id:042863 AJ309625 Chloroflexaceae group clone P5-A08 prokMSA_id:023388 AJ309637 Chloroflexaceae group clone P5-G09 prokMSA_id:025771 AJ309638 Chloroflexaceae group clone P5-H05 prokMSA_id:023241 AJ309646 Chloroflexaceae group clone P6-C11 prokMSA_id:050934 AJ309653 Chloroflexaceae group clone P6-G02 2.7.1.1.024 OTU 2 seqs prokMSA_id:031537 AJ308496 Halotolerant P4-I-0 strain P4-I-0 clone B prokMSA_id:023810 AJ309581 Chloroflexaceae group clone P2-H12 2.7.1.1.026 OTU 111 seqs prokMSA_id:017199 AB041226 Roseiflexus castenholzii prokMSA_id:043336 AF421719 Chloroflexaceae clone Spray_6 prokMSA_id:031628 AF421720 Chloroflexaceae clone Spray_7 prokMSA_id:024679 AF421721 Chloroflexaceae clone Spray_10 prokMSA_id:022465 AF421722 Chloroflexaceae clone Spray_20 prokMSA_id:024027 AF421723 Chloroflexaceae clone Spray_24 prokMSA_id:032481 AF421724 Chloroflexaceae clone Spray_21 prokMSA_id:040663 AF421725 Chloroflexaceae clone Spray_19 prokMSA_id:032728 AF421726 Chloroflexaceae clone Spray_8 prokMSA_id:028052 AF421727 Chloroflexaceae clone Spray_5 prokMSA_id:037227 AF421728 Chloroflexaceae clone Spray_3 prokMSA_id:029258 AF421729 Chloroflexaceae clone Shosh_11 prokMSA_id:073571 AF421730 Chloroflexaceae clone Shosh_24 prokMSA_id:036269 AF421731 Chloroflexaceae clone Shosh_29 prokMSA_id:037532 AF421732 Chloroflexaceae clone Shosh_16 prokMSA_id:026205 AF421733 Chloroflexaceae clone Shosh_3 prokMSA_id:045846 AF421734 Chloroflexaceae clone Shosh_26 prokMSA_id:035814 AF421735 Chloroflexaceae clone Shosh_38 prokMSA_id:069860 AF421736 Chloroflexaceae clone Shosh_4 prokMSA_id:046361 AF421737 Chloroflexaceae clone Fairy_14 prokMSA_id:033000 AF421738 Chloroflexaceae clone Shosh_17 prokMSA_id:052672 AF421740 Chloroflexaceae clone Fairy_32 prokMSA_id:045931 AF421741 Chloroflexaceae clone Fairy_37 prokMSA_id:017612 AF421742 Chloroflexaceae clone Fairy_27 prokMSA_id:034647 AF421743 Chloroflexaceae clone Fairy_9 prokMSA_id:033553 AF421745 Chloroflexaceae clone Shosh_28 prokMSA_id:037685 AF421746 Chloroflexaceae clone Hs2_26 prokMSA_id:035975 AF421748 Chloroflexaceae clone Hs2_38 prokMSA_id:027168 AF421749 Chloroflexaceae clone Witch_5 prokMSA_id:071472 AF421750 Chloroflexaceae clone Hs2_48 prokMSA_id:052656 AF421751 Chloroflexaceae clone Hs2_44 prokMSA_id:025392 AF421752 Chloroflexaceae clone Witch_1 prokMSA_id:041289 AF421753 Chloroflexaceae clone Witch_11 prokMSA_id:051525 AF421754 Chloroflexaceae clone Witch_14 prokMSA_id:031734 AF421755 Chloroflexaceae clone Witch_7 prokMSA_id:025845 AF421756 Chloroflexaceae clone Hs2_53 prokMSA_id:040262 AF421757 Chloroflexaceae clone Witch_8 prokMSA_id:047670 AF421758 Chloroflexaceae clone Witch_10 prokMSA_id:072212 AF421759 Chloroflexaceae clone Hs2_10 prokMSA_id:051953 AF421760 Chloroflexaceae clone Hs2_35 prokMSA_id:073282 AF421761 Chloroflexaceae clone Hs2_1 prokMSA_id:048226 AF421762 Chloroflexaceae clone Hs2_8 prokMSA_id:030748 AF445666 clone SM1C09 prokMSA_id:072864 AJ421643 clone MS1 prokMSA_id:069514 AJ421644 clone MS2 prokMSA_id:070132 AJ421645 clone MS3 prokMSA_id:069547 AJ421647 clone MS5 prokMSA_id:074572 AJ421649 clone MS8 prokMSA_id:070465 AJ421650 clone MS15 prokMSA_id:069402 AJ421651 clone MS17 prokMSA_id:073728 AJ421652 clone MS19 prokMSA_id:069675 AJ421654 clone MS21 prokMSA_id:069199 AJ421655 clone MS23 prokMSA_id:071961 AJ421656 clone MS25 prokMSA_id:073437 AJ421657 clone MS27 prokMSA_id:069605 AJ421658 clone MS29 prokMSA_id:069633 AJ421659 clone MS32 prokMSA_id:069243 AJ421660 clone MS35 prokMSA_id:069067 AJ421661 clone MS37 prokMSA_id:070156 AJ421662 clone MS38 prokMSA_id:069191 AJ421664 clone MS41 prokMSA_id:071327 AJ421666 clone MS48 prokMSA_id:069305 AJ421667 clone MS50 prokMSA_id:055351 AJ421669 clone MS52 prokMSA_id:097378 AY349513 clone JC2701W_35 prokMSA_id:097556 AY349514 clone JC2701W_34 prokMSA_id:096757 AY349515 clone JC2701W_30 prokMSA_id:098686 AY349516 clone JC2701W_28 prokMSA_id:098058 AY349518 clone JC2701W_32 prokMSA_id:096985 AY349520 clone JC2701R_15R prokMSA_id:098014 AY349521 clone JC2701R_55 prokMSA_id:095449 AY349522 clone JC2701R_44 prokMSA_id:097008 AY349523 clone JC2701R_18 prokMSA_id:097134 AY349525 clone JC2701W_4 prokMSA_id:095586 AY349529 clone JC2701W_33 prokMSA_id:096686 AY349530 clone JC2701W_24 prokMSA_id:098527 AY349533 clone JC2701R_52 prokMSA_id:096560 AY349534 clone JC2701R_49 prokMSA_id:096572 AY349535 clone JC2701R_38 prokMSA_id:096590 AY349536 clone JC2701R_2 prokMSA_id:098024 AY349539 clone JC2701R_43 prokMSA_id:096601 AY349540 clone JC2701W_5 prokMSA_id:098265 AY349543 clone JC2701R_47 prokMSA_id:098726 AY349544 clone JC2701W_13 prokMSA_id:097014 AY349545 clone JC2701R_17 prokMSA_id:097953 AY349546 clone JC2701R_12 prokMSA_id:098117 AY349547 clone JC2701R_19 prokMSA_id:097139 AY349548 clone JC2701R_15M prokMSA_id:095981 AY349549 clone JC2701R_11 prokMSA_id:097146 AY349550 clone JC4101W_7 prokMSA_id:095481 AY349551 clone JC4101W_10 prokMSA_id:098477 AY349552 clone JC4101W_8 prokMSA_id:096698 AY349553 clone JC4101W_11 prokMSA_id:095493 AY349554 clone JC4101W_12 prokMSA_id:097026 AY349563 clone JC2702R_26 prokMSA_id:097787 AY349564 clone JC2702R_27 prokMSA_id:097011 AY349565 clone JC2702R_29 prokMSA_id:096952 AY349567 clone JC4102R_2 prokMSA_id:095572 AY349568 clone JC4102R_4 prokMSA_id:098352 AY349573 clone JC2702R_1 prokMSA_id:098755 AY349574 clone JC2702R_9 prokMSA_id:098820 AY349575 clone JC2702R_10 prokMSA_id:098213 AY349576 clone JC2702R_11 prokMSA_id:096665 AY349580 clone JC2702W_11 prokMSA_id:096996 AY349582 clone JC2702W_12 prokMSA_id:096472 AY349584 clone JC2702W_19 prokMSA_id:095234 AY349585 clone JC4102R_6 prokMSA_id:098766 AY349586 clone JC4102R_7 prokMSA_id:096185 AY349587 clone JC4102R_14 prokMSA_id:098041 AY349588 clone JC4102R_17 prokMSA_id:098465 AY349592 clone JC4102W_10 2.7.1.1.027 OTU 1 seq prokMSA_id:026987 AJ309627 Chloroflexaceae group clone P5-C05 2.7.1.1.028 OTU 3 seqs prokMSA_id:027340 AJ309611 Chloroflexaceae group clone P4-D01 prokMSA_id:036770 AJ309645 Chloroflexaceae group clone P6-C03 prokMSA_id:043957 AJ309647 Chloroflexaceae group clone P6-C12 2.7.1.1.029 OTU 2 seqs prokMSA_id:027501 AJ309605 Chloroflexaceae group clone P4-B02 prokMSA_id:036939 AJ309631 Chloroflexaceae group clone P5-E07 2.7.1.1.030 OTU 1 seq prokMSA_id:027897 AJ309618 Chloroflexaceae group clone P4-F04 2.7.1.1.031 OTU 1 seq prokMSA_id:028650 AF418964 clone HTH4 2.7.1.1.032 OTU 1 seq prokMSA_id:031518 AJ309626 Chloroflexaceae group clone P5-B08 2.7.1.1.033 OTU 1 seq prokMSA_id:034391 AY063760 Eikelboom 1851 Ben52 2.7.1.1.034 OTU 2 seqs prokMSA_id:037755 AJ309635 Chloroflexaceae group clone P5-F08 prokMSA_id:043935 AJ309648 Chloroflexaceae group clone P6-D01 2.7.1.1.035 OTU 1 seq prokMSA_id:038489 AB079645 Green non-sulfur B1-5 2.7.1.1.036 OTU 4 seqs prokMSA_id:056710 AF407685 clone R08 prokMSA_id:060594 AF407705 clone G32 prokMSA_id:060577 AF407724 clone B55 prokMSA_id:071275 AJ308501 Chloroflexus aurantiacus strain DSM 637 2.7.1.1.037 OTU 1 seq prokMSA_id:042160 AJ309629 Chloroflexaceae group clone P5-C08 2.7.1.1.038 OTU 1 seq prokMSA_id:042937 AJ309614 Chloroflexaceae group clone P4-E01 2.7.1.1.039 OTU 1 seq prokMSA_id:047687 AJ309642 Chloroflexaceae group clone P6-B03 2.7.1.1.040 OTU 1 seq prokMSA_id:072935 AJ309610 Chloroflexaceae group clone P4-C10 2.7.1.1.041 OTU 1 seq prokMSA_id:054736 AJ309649 Chloroflexaceae group clone P6-D02 2.7.1.1.043 OTU 8 seqs prokMSA_id:034494 AB079637 Kouleothrix aurantiaca strain:COM-B prokMSA_id:037175 AB079638 Kouleothrix aurantiaca strain:EJ2M-A prokMSA_id:041211 AB079639 Kouleothrix aurantiaca strain:MYSI-A prokMSA_id:041533 AB079640 Kouleothrix aurantiaca strain:NH3I-A prokMSA_id:020009 AB079644 Green non-sulfur AK-6 prokMSA_id:020331 AB079646 Green non-sulfur T-1 prokMSA_id:063978 AB087523 clone:R6-06 prokMSA_id:070526 X84565 clone SBR2022 2.7.1.1.044 OTU 1 seq prokMSA_id:065689 AF507694 soil clone S095 2.7.1.1.045 OTU 1 seq prokMSA_id:067264 AF495424 clone F13.26 2.7.1.1.046 OTU 1 seq prokMSA_id:067277 AF495412 clone M01 2.7.1.1.047 OTU 1 seq prokMSA_id:071098 AJ309592 Chloroflexaceae group clone DGGE band P4.5 2.7.1.1.048 OTU 1 seq prokMSA_id:072494 AJ308499 Chloroflexus aggregans strain DSM 9486 2.7.1.1.049 OTU 1 seq prokMSA_id:075040 AY154629 earthworm cast clone c279 2.7.1.1.050 OTU 1 seq prokMSA_id:076511 AY150884 clone glen99_18 2.7.1.1.051 OTU 1 seq prokMSA_id:083414 AY250872 clone FBP267 2.7.1.1.052 OTU 1 seq prokMSA_id:085874 AY250886 clone FBP471 2.7.1.1.053 OTU 1 seq prokMSA_id:088330 AY327217 clone ZB67 2.7.1.1.054 OTU 1 seq prokMSA_id:088721 AY327219 clone ZB66 2.7.1.1.055 OTU 1 seq prokMSA_id:089057 AY327220 clone ZB71 2.7.1.1.056 OTU 1 seq prokMSA_id:090393 AY327221 clone ZB70 2.7.1.1.057 OTU 1 seq prokMSA_id:090766 AY221598 soil clone HN1-15 2.7.1.1.058 OTU 1 seq prokMSA_id:095267 AY349562 clone JC2702W_20 2.7.1.1.059 OTU 1 seq prokMSA_id:095401 AY349583 clone JC2702W_13 2.7.1.1.060 OTU 1 seq prokMSA_id:095405 AY349571 clone JC4102W_15 2.7.1.1.061 OTU 1 seq prokMSA_id:095662 AY349526 clone JC2701W_15 2.7.1.1.062 OTU 3 seqs prokMSA_id:096340 AY349517 clone JC2701W_27 prokMSA_id:098602 AY349528 clone JC2701W_36 prokMSA_id:096389 AY349566 clone JC2702W_31 2.7.1.1.063 OTU 2 seqs prokMSA_id:097420 AY349537 clone JC2701W_8 prokMSA_id:098509 AY349542 clone JC2701W_3 2.7.1.1.064 OTU 1 seq prokMSA_id:097713 AY349527 clone JC2701W_2 2.7.1.1.065 OTU 1 seq prokMSA_id:098000 AY349531 clone JC2701R_9 2.7.1.1.999 poor quality 81 seqs prokMSA_id:018372 AB039817 Chloroflexus sp. HS-7 prokMSA_id:030606 AB064676 clone:NK196 prokMSA_id:040773 AB075785 prokMSA_id:038464 AB075786 prokMSA_id:016680 AB075787 prokMSA_id:022383 AB079641 Kouleothrix aurantiaca strain:SCM-E prokMSA_id:039786 AB079642 Herpetosiphon sp. OSI-B2 prokMSA_id:068640 AB081817 seuence clone:A-10 prokMSA_id:068634 AB081823 seuence clone:B-06 prokMSA_id:001277 AF093427 Oscillochloris trichoides str. Dg6. prokMSA_id:031588 AF128660 soil C070 prokMSA_id:001267 AF128695 clone S095. prokMSA_id:001269 AF128724 clone C043. prokMSA_id:073888 AF146831 Oscillochloris sp. A19 prokMSA_id:073897 AF146832 Oscillochloris sp. R prokMSA_id:071731 AF149018 Oscillochloris sp. BM prokMSA_id:041505 AF234122 #0319-23B10 prokMSA_id:056395 AF234123 #0319-23G23 prokMSA_id:020749 AF234136 #0319-7B6 prokMSA_id:038692 AF345825 Chloronema giganteum clone Gnsb-1 prokMSA_id:031443 AF345827 green nonsulfur isolate DGGE-band-3 prokMSA_id:074431 AF345829 green nonsulfur isolate DGGE-band-5 prokMSA_id:042548 AF345831 green nonsulfur isolate DGGE-band-7 prokMSA_id:033130 AF345833 green nonsulfur isolate DGGE-band-9 prokMSA_id:068867 AF345834 green nonsulfur isolate DGGE-band-10 prokMSA_id:020924 AF345842 green nonsulfur isolate DGGE-band-18 prokMSA_id:068040 AF365708 clone BT60DS1BE6 prokMSA_id:077031 AF432771 clone C46.91PG prokMSA_id:022846 AF446249 green nonsulfur FL14C01 prokMSA_id:021880 AF446250 green nonsulfur FL14E06 prokMSA_id:067248 AF495439 clone F13.44 prokMSA_id:056498 AF507448 soil clone C077 prokMSA_id:070440 AJ308500 Chloroflexus aurantiacus strain DSM 636 prokMSA_id:073605 AJ308502 Sulfidic hot spring NPE strain NPE prokMSA_id:026296 AJ309588 Chloroflexaceae group clone DGGE band P4.1 prokMSA_id:071917 AJ309589 Chloroflexaceae group clone DGGE band P4.2 prokMSA_id:071208 AJ309591 Chloroflexaceae group clone DGGE band P4.4 prokMSA_id:070760 AJ309594 Chloroflexaceae group clone DGGE band P5.3 prokMSA_id:068942 AJ309595 Chloroflexaceae group clone DGGE band P5.5 prokMSA_id:070999 AJ309596 Chloroflexaceae group clone DGGE band P5.6 prokMSA_id:047288 AJ309652 Chloroflexaceae group clone P6-F12 prokMSA_id:046534 AJ400528 clone Hb1-K22 prokMSA_id:023687 AJ400571 clone G4-K13 prokMSA_id:069834 AJ421663 clone MS40 prokMSA_id:074227 AJ421665 clone MS42 prokMSA_id:072687 AJ421694 Chloroflexaceae strain 60C-I-2 prokMSA_id:072543 AJ421695 Chloroflexaceae strain 45C-II-1 prokMSA_id:022117 AJ437408 clone 1_32_201 prokMSA_id:062593 AJ504526 isolate P1CN65 prokMSA_id:062563 AJ504559 isolate P2CN08 prokMSA_id:055418 AJ504566 isolate P2CN17 prokMSA_id:062556 AJ504569 isolate P2CN20 prokMSA_id:062526 AJ504606 isolate P2CN69 prokMSA_id:056600 AJ504608 isolate P2CN71 prokMSA_id:061303 AY043952 green nonsulfur clone NMW3.41WL prokMSA_id:077093 AY157066 Chloroflexi isolate WA-1 prokMSA_id:076583 AY157069 Chloroflexi isolate WC-4 prokMSA_id:074960 AY157074 Chloroflexi isolate WC-1 prokMSA_id:075580 AY157079 Chloroflexi isolate WD-1 prokMSA_id:075473 AY157089 Chloroflexi isolate WB-1 prokMSA_id:076829 AY157098 Chloroflexi isolate WB-4 prokMSA_id:076486 AY157102 Chloroflexi isolate WB-5 prokMSA_id:075595 AY157122 Chloroflexi isolate HS-8 prokMSA_id:085835 AY221052 clone CCM18a prokMSA_id:086366 AY271758 clone 9 prokMSA_id:001284 D26189 soil from paddy field clone PAD2. prokMSA_id:001271 D26192 soil from paddy field clone PAD5. prokMSA_id:001264 D32255 Chloroflexus aggregans str. MD-66 DSM 9485 . prokMSA_id:001273 D38365 Chloroflexus aurantiacus str. J-10-fl . prokMSA_id:001270 L04703 Octopus Spring microbial mat from Yellowstone NP clone prokMSA_id:001280 L05508 Chloroflexus aurantiacus str. Y400-fl. prokMSA_id:001279 L47200 str. env.OS_ace4. prokMSA_id:001276 M34116 Chloroflexus aurantiacus str. J-10-fl ATCC 29366 . prokMSA_id:001272 M34117 Herpetosiphon aurantiacus ATCC 23779 . prokMSA_id:001265 M62774 Octopus Spring microbial mat from Yellowstone NP clone prokMSA_id:001283 M62775 Octopus Spring microbial mat from Yellowstone NP clone C. prokMSA_id:001278 U90433 str. OS CC double prime. prokMSA_id:074057 X52546 Unknown Octopus Spring OS C prokMSA_id:001274 X53210 Sphaerobacter thermophilus str. 6022 DSM 20745 . prokMSA_id:001281 X84565 str. SBR2022. prokMSA_id:001268 X86447 Herpetosiphon sp. str. F018. 2.7.1.2 ENVIRONMENTAL_CLONE_T78_GROUP 130 seqs 2.7.1.2.003 OTU 8 seqs prokMSA_id:066093 AB074961 green nonsulfur clone:KB44 prokMSA_id:085997 AB092876 clone:ALU34 prokMSA_id:001300 AF050570 clone WCHB1-57. prokMSA_id:047072 AF408643 clone PCEDR319 prokMSA_id:048579 AF423184 Toluene-degrading methanogenic consortium Eub 4 prokMSA_id:042924 AJ009488 SJA-117 clone SJA-117 prokMSA_id:084981 AY280656 clone G4-15 prokMSA_id:001299 Z94009 clone T78. 2.7.1.2.004 OTU 1 seq prokMSA_id:001298 AB015556 str. BD3-16. 2.7.1.2.005 OTU 7 seqs prokMSA_id:001297 AF018195 clone env.OPS 12. prokMSA_id:001285 AF027036 clone OPB65. prokMSA_id:001291 AF027039 clone OPS121. prokMSA_id:001292 AF027040 clone OPT86. prokMSA_id:074684 AF445659 green nonsulfur clone SM1B12 prokMSA_id:018359 AF445735 green nonsulfur clone SM2G02 prokMSA_id:052019 AF445746 green nonsulfur clone SM2H10 2.7.1.2.006 OTU 2 seqs prokMSA_id:001295 AF154100 clone GCA112. prokMSA_id:001296 AF154104 clone GCA004. 2.7.1.2.007 OTU 1 seq prokMSA_id:001293 AF027041 clone OPT90. 2.7.1.2.008 OTU 5 seqs prokMSA_id:001288 AF142948 clone PENDANT-37. prokMSA_id:023867 AF424383 green nonsulfur MERTZ_2CM_159 prokMSA_id:036235 AF424394 green nonsulfur MERTZ_21CM_133 prokMSA_id:026191 AF424398 green nonsulfur MERTZ_21CM_236 prokMSA_id:056086 AY133370 clone OB3_58 2.7.1.2.009 OTU 2 seqs prokMSA_id:001287 AJ009453 clone SJA-15. prokMSA_id:052017 AJ249106 SHA-3 2.7.1.2.010 OTU 1 seq prokMSA_id:017395 AJ309633 Chloroflexaceae group clone P5-E09 2.7.1.2.011 OTU 1 seq prokMSA_id:017551 AF424391 green nonsulfur MERTZ_0CM_203 2.7.1.2.012 OTU 1 seq prokMSA_id:022225 AJ296574 GR/GS-296.II.265 clone GR/GS-296.II.265 2.7.1.2.014 OTU 1 seq prokMSA_id:022922 AJ249103 SHA-21 2.7.1.2.015 OTU 2 seqs prokMSA_id:023428 AF234690 sludge H39 prokMSA_id:036737 AF234734 sludge S41 2.7.1.2.016 OTU 1 seq prokMSA_id:025817 AF424389 green nonsulfur MERTZ_2CM_341 2.7.1.2.018 OTU 1 seq prokMSA_id:029524 AF424396 green nonsulfur MERTZ_21CM_197 2.7.1.2.019 OTU 1 seq prokMSA_id:069766 AJ306745 clone SHA-31 2.7.1.2.020 OTU 2 seqs prokMSA_id:046319 AF424386 green nonsulfur MERTZ_2CM_230 prokMSA_id:035554 AF424392 green nonsulfur MERTZ_0CM_325 2.7.1.2.021 OTU 1 seq prokMSA_id:036476 AJ307949 mRNA clone sipK52 2.7.1.2.023 OTU 4 seqs prokMSA_id:051154 AF316759 Crater Lake CL500-11 prokMSA_id:031541 AF316760 Crater Lake CL500-27 prokMSA_id:026758 AF316761 Crater Lake CL500-86 prokMSA_id:037891 AF316762 Crater Lake CL500-86 2.7.1.2.024 OTU 1 seq prokMSA_id:038885 AB031626 green non-sulfur TIHP302-40 2.7.1.2.025 OTU 1 seq prokMSA_id:039542 AF224849 clone Car120rc 2.7.1.2.027 OTU 12 seqs prokMSA_id:022845 AF234759 sludge S16 prokMSA_id:072088 AF423278 soil clone 572-2 prokMSA_id:071187 AF423285 soil clone 666-2 prokMSA_id:070551 AF423290 soil clone 746-2 prokMSA_id:072308 AF423295 soil clone 838-2 prokMSA_id:067292 AF495396 clone F10.31 prokMSA_id:067258 AF495430 clone F13.34 prokMSA_id:048198 AY037557 soil clone S003 prokMSA_id:040747 AY037587 soil clone S054 prokMSA_id:076336 AY150877 Chloroflexus sp. clone glen99_19 prokMSA_id:071675 X84472 clone SBR1029 prokMSA_id:073823 X84498 clone SBR1064 2.7.1.2.028 OTU 1 seq prokMSA_id:041419 AF234716 sludge S38 2.7.1.2.029 OTU 2 seqs prokMSA_id:052047 AF424380 green nonsulfur MERTZ_2CM_18 prokMSA_id:049130 AF424400 green nonsulfur MERTZ_21CM_278 2.7.1.2.030 OTU 1 seq prokMSA_id:050483 AF424399 green nonsulfur MERTZ_21CM_275 2.7.1.2.031 OTU 1 seq prokMSA_id:062551 AJ504591 isolate P2CN44 2.7.1.2.032 OTU 1 seq prokMSA_id:063211 AF524014 clone FW48 2.7.1.2.033 OTU 1 seq prokMSA_id:065480 AJ278168 SHD-58 2.7.1.2.034 OTU 3 seqs prokMSA_id:065482 AJ278166 SHD-197 prokMSA_id:065481 AJ278167 SHD-71 prokMSA_id:066912 AJ306792 clone SHD-12 2.7.1.2.035 OTU 1 seq prokMSA_id:066908 AJ306797 clone SHD-194 2.7.1.2.036 OTU 1 seq prokMSA_id:066948 AJ306742 clone SHA-20 2.7.1.2.037 OTU 1 seq prokMSA_id:069877 AF419664 a2b042 2.7.1.2.038 OTU 1 seq prokMSA_id:071332 AF280867 mle1-48 2.7.1.2.039 OTU 1 seq prokMSA_id:072837 AJ347082 clone TK87 2.7.1.2.040 OTU 1 seq prokMSA_id:072863 AJ441227 green non-sulfur clone P. palm C 37 2.7.1.2.041 OTU 1 seq prokMSA_id:073876 X84474 clone SBR1031 2.7.1.2.042 OTU 1 seq prokMSA_id:076852 AJ519409 clone JG37-AG-138 2.7.1.2.043 OTU 1 seq prokMSA_id:078435 AJ536889 clone JG30-KF-CM41 2.7.1.2.044 OTU 1 seq prokMSA_id:080541 AY193180 clone O1aA31 2.7.1.2.045 OTU 1 seq prokMSA_id:080615 AY192991 Chloroflexi clone BMSB4 2.7.1.2.046 OTU 1 seq prokMSA_id:083792 AY217511 clone WCB171 2.7.1.2.047 OTU 1 seq prokMSA_id:085378 AB092877 clone:ALU35 2.7.1.2.048 OTU 1 seq prokMSA_id:089758 AJ577121 Chloroflexales clone 10 2.7.1.2.049 OTU 1 seq prokMSA_id:089830 AY221613 soil clone HS9-66 2.7.1.2.050 OTU 1 seq prokMSA_id:093648 AY360493 clone BSB11-217m 2.7.1.2.051 OTU 1 seq prokMSA_id:094096 AJ582049 clone JG36-GS-122 2.7.1.2.052 OTU 1 seq prokMSA_id:097847 AY211664 Chloroflexi clone GoM GC185 546E 2.7.1.2.999 poor quality 46 seqs prokMSA_id:086498 AB109407 Chloroflexi clone:AMG-3 prokMSA_id:086127 AB109416 Chloroflexi clone:BMG-5 prokMSA_id:085012 AB109419 Chloroflexi clone:CMG-3 prokMSA_id:001289 AF027037 clone OPS54B. prokMSA_id:001290 AF027038 clone OPS57. prokMSA_id:001294 AF027042 clone OPS143B. prokMSA_id:026615 AF107533 SY5-1 prokMSA_id:001286 AF173820 clone LB3-17. prokMSA_id:027091 AF289914 green nonsulfur Kmlps6-20 prokMSA_id:030754 AF316758 Crater Lake CL120-142 prokMSA_id:037808 AF345837 green nonsulfur isolate DGGE-band-13 prokMSA_id:027809 AF345839 green nonsulfur isolate DGGE-band-15 prokMSA_id:068220 AF365503 clone BM89MF5BC5 prokMSA_id:028851 AF392757 clone LBF6 prokMSA_id:025044 AF424397 green nonsulfur MERTZ_21CM_199 prokMSA_id:055234 AF429083 clone CR99-7-49 prokMSA_id:067094 AF499364 clone JCL9-95 prokMSA_id:065908 AF507413 soil clone C082 prokMSA_id:061155 AF530103 isolate MGP DGGE Band 11B prokMSA_id:017545 AJ244348 Riz1072 prokMSA_id:056575 AJ347038 clone TK23 prokMSA_id:027998 AJ421185 clone C1-K16 prokMSA_id:029167 AJ437458 clone 1_32_319 prokMSA_id:057302 AJ518151 clone Mul1-31 prokMSA_id:057202 AJ518308 clone Mul2P3-90 prokMSA_id:057159 AJ518367 clone Neu4P1-3 prokMSA_id:057148 AJ518379 clone Neu4P1-55 prokMSA_id:057119 AJ518415 clone Neu4P3-16 prokMSA_id:057097 AJ518438 clone Neu4P3-51 prokMSA_id:057094 AJ518443 clone Neu4P3-57 prokMSA_id:055609 AJ518454 clone Neu4P3-69 prokMSA_id:057006 AJ518553 clone Qui4P1-81 prokMSA_id:056971 AJ518596 clone Qui4P2-62 prokMSA_id:050141 AY037614 soil clone S091 prokMSA_id:069118 AY144276 Flavobacterium sp. LTUCFB05114 prokMSA_id:056820 AY149767 Gram-positive SIMO CL-S30-100 prokMSA_id:077245 AY157138 isolate PG-91 prokMSA_id:074965 AY157140 isolate PG-70 prokMSA_id:076805 AY157143 isolate PG-73 prokMSA_id:075747 AY157145 Chloroflexi isolate PG-39 prokMSA_id:079784 AY193061 Chloroflexi clone O1aA27 prokMSA_id:087050 AY283142 Chloroflexi clone NS-29 prokMSA_id:090567 AY304012 soil clone Dpcom49 prokMSA_id:088354 AY311793 Dpcom95 prokMSA_id:088509 AY311806 Dpcom108 prokMSA_id:001301 X84474 str. SBR1031. 2.7.1.3 ENVIRONMENTAL_CLONE_OPB92_GROUP 48 seqs 2.7.1.3.001 OTU 1 seq prokMSA_id:001315 AF047571 clone LGd9. 2.7.1.3.002 OTU 5 seqs prokMSA_id:001310 AF027030 clone OPB92. prokMSA_id:001311 AF047558 str. from Obsidian Pool hot spring Yellowstone National Park. prokMSA_id:001313 AF047560 clone NTd43. prokMSA_id:028223 AF445687 candidate division OP11 clone SM1E10 prokMSA_id:070029 AY145681 candidate division OP11 FL11H04 2.7.1.3.003 OTU 3 seqs prokMSA_id:001308 AF047559 clone NTd42. prokMSA_id:001312 AF047561 str. from Obsidian Pool hot spring Yellowstone National Park. prokMSA_id:040604 AF445690 candidate division OP11 clone SM1F02 2.7.1.3.004 OTU 1 seq prokMSA_id:001309 AF027026 clone OPS128. 2.7.1.3.005 OTU 1 seq prokMSA_id:001307 AF047567 clone LGd10. 2.7.1.3.006 OTU 1 seq prokMSA_id:001306 AF047564 clone LGd5. 2.7.1.3.007 OTU 1 seq prokMSA_id:001305 AF047566 clone LGd6. 2.7.1.3.008 OTU 1 seq prokMSA_id:001304 AF047570 clone LGd2. 2.7.1.3.009 OTU 2 seqs prokMSA_id:001302 AF047568 clone LGd1. prokMSA_id:001303 AF047569 clone LGd15. 2.7.1.3.010 OTU 1 seq prokMSA_id:016555 AF047565 Candidate division OP11 clone LGd12 2.7.1.3.011 OTU 1 seq prokMSA_id:070199 AF419659 a2b019 2.7.1.3.012 OTU 1 seq prokMSA_id:024046 AF422630 clone d010 2.7.1.3.013 OTU 1 seq prokMSA_id:062016 AF523333 clone P4-18 2.7.1.3.014 OTU 2 seqs prokMSA_id:087155 AY293413 candidate division OP11 clone Lig060299-9.2 prokMSA_id:086915 AY293414 candidate division OP11 clone Lig060299-9.10 2.7.1.3.015 OTU 1 seq prokMSA_id:094329 AJ583210 clone S15D-MN64 2.7.1.3.016 OTU 1 seq prokMSA_id:095593 AB107805 candidate division OP11 clone:ST-2 2.7.1.3.999 poor quality 24 seqs prokMSA_id:001314 AF047557 clone O1Ad37. prokMSA_id:023998 AF446253 candidate division OP11 FL04G04 prokMSA_id:017987 AF446254 candidate division OP11 FL04D01 prokMSA_id:032256 AF446256 candidate division OP11 FL05B05 prokMSA_id:027920 AF446257 candidate division OP11 FL05F04 prokMSA_id:043806 AF446323 FL07C04 prokMSA_id:074238 AY145679 candidate division OP11 FL11D12 prokMSA_id:087754 AY293416 candidate division OP11 clone Lig060299-10.13 prokMSA_id:086779 AY293444 candidate division OP11 clone FL04D03 prokMSA_id:086764 AY293447 candidate division OP11 clone FL04F07 prokMSA_id:088034 AY293448 candidate division OP11 clone FL04G03 prokMSA_id:087906 AY293449 candidate division OP11 clone FL04G06 prokMSA_id:086766 AY293453 candidate division OP11 clone FL05A04 prokMSA_id:087367 AY293461 candidate division OP11 clone FL05E03 prokMSA_id:087922 AY293462 candidate division OP11 clone FL05E06 prokMSA_id:086953 AY293525 candidate division OP11 clone FL13E01 prokMSA_id:088015 AY293526 candidate division OP11 clone FL13E04 prokMSA_id:086977 AY293528 candidate division OP11 clone FL13E08 prokMSA_id:087200 AY293536 candidate division OP11 clone FL14A03 prokMSA_id:086761 AY293540 candidate division OP11 clone FL14C04 prokMSA_id:087296 AY293542 candidate division OP11 clone FL14C10 prokMSA_id:087675 AY293546 candidate division OP11 clone FL14D08 prokMSA_id:087821 AY293551 candidate division OP11 clone FL14F01 prokMSA_id:087701 AY293555 candidate division OP11 clone FL14F07 2.7.2 DEINOCOCCUS-THERMUS_SUBDIVISION 244 seqs 2.7.2.1 THERMUS_GROUP 196 seqs 2.7.2.1.1 T.THERMOPHILUS_SUBGROUP 130 seqs 2.7.2.1.1.001 OTU 1 seq prokMSA_id:001359 Z15060 Thermus sp. str. SPS14. 2.7.2.1.1.008 OTU 86 seqs prokMSA_id:001338 AB020888 Thermus sp. str. TMY1. prokMSA_id:024092 AB071811 Thermus kawarayuensis prokMSA_id:072262 AF005751 H21.73.f prokMSA_id:001350 AF005751 Thermus H21.73.f. prokMSA_id:001324 AF018197 clone env.OPS 15. prokMSA_id:001335 AF020205 Thermus SA-01 str. SA-01. prokMSA_id:001318 AF027019 clone OPB19. prokMSA_id:001319 AF027020 clone OPB31. prokMSA_id:001320 AF027021 clone OPB32. prokMSA_id:001321 AF027023 clone OPS15. prokMSA_id:001322 AF027024 clone OPS25. prokMSA_id:001333 AF032127 Thermus scotoductus str. SE-1 DSM 8553 . prokMSA_id:025836 AF255590 Thermus sp. SRI-96 prokMSA_id:017962 AF255591 Thermus sp. SRI-248 prokMSA_id:045737 AF257219 Thermus sp. IT-7254 prokMSA_id:027993 AF324062 Thermus sp. NTU-024 prokMSA_id:041572 AF331969 Thermus rehai prokMSA_id:053657 AF384168 Thermus sp. HR13 prokMSA_id:060622 AF407674 clone Y03 prokMSA_id:060620 AF407676 clone Y10 prokMSA_id:060615 AF407681 clone Y71 prokMSA_id:060614 AF407682 clone Y88 prokMSA_id:060613 AF407683 clone Y90 prokMSA_id:060605 AF407693 clone R58 prokMSA_id:060604 AF407694 clone R75 prokMSA_id:060569 AF407732 Thermus sp. Y70-05 prokMSA_id:060568 AF407733 Thermus sp. Y70-06 prokMSA_id:060567 AF407734 Thermus sp. Y70-07 prokMSA_id:060566 AF407735 Thermus sp. R70-06 prokMSA_id:060565 AF407736 Thermus sp. R70-07 prokMSA_id:055806 AF407737 Thermus sp. G70-05 prokMSA_id:055685 AF407738 Thermus sp. G70-06 prokMSA_id:060564 AF407739 Thermus sp. G70-07 prokMSA_id:060563 AF407740 Thermus sp. G70-08 prokMSA_id:060562 AF407741 Thermus sp. B70-04 prokMSA_id:060561 AF407742 Thermus sp. B70-05 prokMSA_id:060560 AF407743 Thermus sp. Y55-07 prokMSA_id:060559 AF407744 Thermus sp. Y55-08 prokMSA_id:060558 AF407745 Thermus sp. Y55-09 prokMSA_id:060557 AF407746 Thermus sp. Y55-10 prokMSA_id:060555 AF407747 Thermus sp. Y55-11 prokMSA_id:060556 AF407748 Thermus sp. Y55-12 prokMSA_id:029817 AF445644 Thermus/Deinococcus group clone SM1A01 prokMSA_id:071171 AF448817 Thermus sp. YBJ-1 prokMSA_id:063592 AF521186 Thermus sp. RH-914 prokMSA_id:063589 AF521187 Thermus sp. RH-1214 prokMSA_id:063588 AF521188 Thermus sp. RH-1514 prokMSA_id:001351 AJ011355 clone C42. prokMSA_id:035173 AJ251938 Thermus thermophilus strain CS prokMSA_id:037306 AJ251939 Thermus thermophilus strain X6 prokMSA_id:040690 AJ251940 Thermus thermophilus strain CT1 prokMSA_id:075730 AX557347 45 from Patent WO0246392 prokMSA_id:016358 AY053486 AT425_EubC9 prokMSA_id:067868 AY082363 Thermus sp. clone DFQ6 prokMSA_id:067865 AY082364 Thermus sp. clone DFQ28 prokMSA_id:067864 AY082365 Thermus sp. clone DFQ34 prokMSA_id:067866 AY082366 Thermus sp. clone DFQ37 prokMSA_id:069535 AY145642 Deinococci FL10F01 prokMSA_id:081243 AY169420 Thermus scotoductus clone 1-43 prokMSA_id:081961 AY169426 Thermus scotoductus clone 1-71 prokMSA_id:001316 L09659 Thermus thermophilus str. HB27. prokMSA_id:001344 L09660 Thermus flavus str. AT-62. prokMSA_id:001334 L09661 Thermus sp. str. NMX2 A.1. prokMSA_id:001355 L09662 Thermus sp. str. ZFI A.2. prokMSA_id:001345 L09663 Thermus aquaticus str. YT-1. prokMSA_id:001348 L09664 Thermus sp. str. ZHGI A.1. prokMSA_id:001337 L09670 Thermus sp. str. HS A.1. prokMSA_id:001328 L10067 Thermus sp. str. Fiji 3A.1. prokMSA_id:001317 L10070 Thermus sp. str. YSPID A.1. prokMSA_id:001325 L10071 Thermus sp. str. ZHGIB A.4. prokMSA_id:001356 L37520 Thermus sp. str. ac-1. prokMSA_id:001357 L37522 Thermus sp. str. ac-7. prokMSA_id:001349 M26923 Thermus thermophilus str. HB-8. prokMSA_id:001326 X07998 Thermus thermophilus str. HB-8 ATCC 27634 . prokMSA_id:018463 Y18406 Thermus igniterrae strain RF-4T prokMSA_id:033149 Y18407 Thermus igniterrae strain HN1-8 prokMSA_id:047782 Y18408 Thermus igniterrae strain GE-2 prokMSA_id:030085 Y18409 Thermus brockianus strain 15038T prokMSA_id:026144 Y18410 Thermus scotoductus strain ITI-252T prokMSA_id:039025 Y18411 Thermus antranikianus strain HN3-7T prokMSA_id:035343 Y18412 Thermus antranikianus strain HE-5 prokMSA_id:047392 Y18413 Thermus antranikianus strain HN3-10 prokMSA_id:043240 Y18414 Thermus antranikianus strain HN2-3 prokMSA_id:018989 Y18415 Thermus antranikianus strain HN2-7 prokMSA_id:001358 Z15061 Thermus sp. str. ViI7. prokMSA_id:001331 Z15062 Thermus sp. str. YS38. 2.7.2.1.1.009 OTU 2 seqs prokMSA_id:085579 AB107956 Oceanothermus sp. St55B prokMSA_id:020463 AJ430586 Marinothermus profundus strain 506T 2.7.2.1.1.010 OTU 1 seq prokMSA_id:035903 AB079382 Marinothermus hydrothermalis 2.7.2.1.1.011 OTU 3 seqs prokMSA_id:046453 AB054646 Thermus sp. T2 prokMSA_id:060595 AF407704 clone G24 prokMSA_id:045920 Y18416 Thermus oshimai strain SPS-17T 2.7.2.1.1.012 OTU 1 seq prokMSA_id:067904 AY028380 Thermus sp. C4 2.7.2.1.1.999 poor quality 36 seqs prokMSA_id:001339 AB000692 clone 5 of cluster II. prokMSA_id:001340 AB000693 clone 16 of cluster II. prokMSA_id:001341 AB000694 clone 53 of cluster II. prokMSA_id:001342 AB000695 clone 64 of cluster II. prokMSA_id:001343 AB000696 clone 101 of cluster II. prokMSA_id:022426 AB075789 prokMSA_id:035359 AB075792 prokMSA_id:035700 AB075793 prokMSA_id:027364 AB075799 prokMSA_id:026548 AB079477 clone:TOYO-16-Dm prokMSA_id:001346 AF027022 clone OPS8A. prokMSA_id:001323 AF027025 clone OPT60. prokMSA_id:025693 AF181926 clone 23d/5 prokMSA_id:025164 AF255592 Thermus sp. SRI-1E1 prokMSA_id:033770 AF311355 Thermus sp. OlB-335 prokMSA_id:022209 AF311356 Thermus sp. OlB-343 prokMSA_id:073268 AF481346 Thermus sp. manikaranii prokMSA_id:001352 AJ011358 clone C24. prokMSA_id:001353 AJ011359 clone C25. prokMSA_id:001354 AJ011360 clone C27. prokMSA_id:069382 AJ404599 US13 prokMSA_id:069020 AY028970 Thermus sp. prokMSA_id:079826 AY193055 Thermus sp. clone O1aA86 prokMSA_id:079632 AY193056 Thermus sp. clone O1aA89 prokMSA_id:079858 AY193057 Thermus sp. clone O1aA94 prokMSA_id:080028 AY193059 Thermus sp. clone O1aA10 prokMSA_id:083328 AY256620 DGGE band S5-11 prokMSA_id:086898 AY293500 Deinococci clone FL08B08 prokMSA_id:087174 AY293502 Deinococci clone FL08D03 prokMSA_id:086907 AY293548 Deinococci clone FL14E09 prokMSA_id:001347 L47202 Thermus env.OS_ac7' str. env.OS_ac7. prokMSA_id:001332 X58340 Thermus aquaticus str. X-1 ATCC 27978. prokMSA_id:001330 X58341 Thermus flavus str. AT-62 ATCC 33923. prokMSA_id:001336 X58342 Thermus thermophilus str. HB-8 ATCC 27634 . prokMSA_id:001327 X58343 Thermus aquaticus str. YT-1. prokMSA_id:001329 X58344 Thermus sp. str. OS-Ramaley-4. 2.7.2.1.2 T.FILIFORMIS_SUBGROUP 36 seqs 2.7.2.1.2.001 OTU 9 seqs prokMSA_id:038282 AF402971 Thermus sp. clone prokMSA_id:001385 L09665 Thermus sp. str. Tok20 A.1. prokMSA_id:001384 L09666 Thermus sp. str. Tok8 A.1. prokMSA_id:001360 L09667 Thermus filiformis. prokMSA_id:001393 L09668 Thermus sp. str. OK6 A.1. prokMSA_id:001392 L09669 Thermus sp. str. Rt4 1A. prokMSA_id:001394 L09671 Thermus sp. str. T351. prokMSA_id:001383 L10068 Thermus sp. str. W28 A.1. prokMSA_id:001388 L10069 Thermus sp. str. Tok3 A.1. 2.7.2.1.2.002 OTU 1 seq prokMSA_id:001387 AF027046 clone OPS143A. 2.7.2.1.2.003 OTU 1 seq prokMSA_id:001386 AF027007 clone OPS1. 2.7.2.1.2.999 poor quality 25 seqs prokMSA_id:001364 AF143629 Thermus OH1 str. OH1. prokMSA_id:001389 AF143630 Thermus OH2 str. OH2. prokMSA_id:001390 AF143631 Thermus OH3 str. OH3. prokMSA_id:001365 AF143632 Thermus OH4 str. OH4. prokMSA_id:001366 AF143633 Thermus OH5 str. OH5. prokMSA_id:001391 AF143634 Thermus OH6 str. OH6. prokMSA_id:001367 AF143635 Thermus EOH1 str. EOH1. prokMSA_id:001368 AF143636 Thermus EOH2 str. EOH2. prokMSA_id:001369 AF143637 Thermus EOH3 str. EOH3. prokMSA_id:001370 AF143638 Thermus EOH4 str. EOH4. prokMSA_id:001371 AF143639 Thermus EOH5 str. EOH5. prokMSA_id:001372 AF143640 Thermus EOH6 str. EOH6. prokMSA_id:001373 AF143641 Thermus PA1 str. PA1. prokMSA_id:001374 AF143642 Thermus PA2 str. PA2. prokMSA_id:001375 AF143643 Thermus PA3 str. PA3. prokMSA_id:001376 AF143644 Thermus PA4 str. PA4. prokMSA_id:001377 AF143645 Thermus PA5 str. PA5. prokMSA_id:001378 AF143646 Thermus PA6 str. PA6. prokMSA_id:001379 AF143647 Thermus EPA1 str. EPA1. prokMSA_id:001380 AF143648 Thermus EPA2 str. EPA2. prokMSA_id:001381 AF143649 Thermus EPA3 str. EPA3. prokMSA_id:001361 AF143650 Thermus EPA4 str. EPA4. prokMSA_id:001362 AF143651 Thermus EPA5 str. EPA5. prokMSA_id:001363 AF143652 Thermus EPA6 str. EPA6. prokMSA_id:001382 X58345 Thermus filiformis str. WAI 33 A1 ATCC 43280 . 2.7.2.1.3 MEI.RUBER_SUBGROUP 30 seqs 2.7.2.1.3.001 OTU 3 seqs prokMSA_id:001405 X84211 Meiothermus silvanus str. V1-R2 DSM 9946 . prokMSA_id:001406 Y13598 Meiothermus silvanus str. GY-8. prokMSA_id:001407 Y13599 Meiothermus silvanus str. GY-10. 2.7.2.1.3.002 OTU 1 seq prokMSA_id:001404 X84212 Meiothermus chliarophilus str. ALT-8 DSM 9957 . 2.7.2.1.3.003 OTU 17 seqs prokMSA_id:017405 AF312766 Meiothermus rosaceus prokMSA_id:060612 AF407684 clone R03 prokMSA_id:056267 AF407703 clone G21 prokMSA_id:060593 AF407706 clone G34 prokMSA_id:060587 AF407712 clone B01 prokMSA_id:056011 AF407749 Thermus sp. R55-10 prokMSA_id:069769 AF407750 Meiothermus sp. R55-11 prokMSA_id:026209 AF418001 Meiothermus taiwanensis strain WR-30T prokMSA_id:020802 AF418002 Meiothermus taiwanensis strain WR-220 prokMSA_id:001400 L09672 Meiothermus ruber. prokMSA_id:001398 L37521 Thermus sp. str. ac-2. prokMSA_id:001395 L37523 Thermus sp. str. ac-17. prokMSA_id:001396 Y13594 Meiothermus cerbereus str. GY-1 DSM 11376 . prokMSA_id:001397 Y13595 Meiothermus cerbereus str. GY-5. prokMSA_id:001401 Y13596 Meiothermus ruber str. 16105. prokMSA_id:001402 Y13597 Meiothermus ruber str. 16106. prokMSA_id:001403 Z15059 Meiothermus ruber str. Loginova 21 ATCC 35948 . 2.7.2.1.3.004 OTU 1 seq prokMSA_id:035829 AF419205 antarctic soil clone bh6.6 2.7.2.1.3.005 OTU 1 seq prokMSA_id:060062 AJ507298 Vulcanithermus medioatlanticus strain TR 2.7.2.1.3.006 OTU 1 seq prokMSA_id:066531 AY100551 clone cvf65163 2.7.2.1.3.007 OTU 1 seq prokMSA_id:086556 AY250871 Deinococci 2.7.2.1.3.999 poor quality 5 seqs prokMSA_id:055840 AF332303 clone T26-18 prokMSA_id:045868 AF419216 antarctic soil clone bh6.58 prokMSA_id:080440 AY191889 Marinithermus sp. clone BG6 prokMSA_id:001399 X58346 Meiothermus ruber str. Loginova 21 ATCC 35948 . prokMSA_id:070201 Z69288 sp. clone group JA24he 2.7.2.2 DEINOCOCCUS_GROUP 46 seqs 2.7.2.2.002 OTU 5 seqs prokMSA_id:001420 AJ000002 Deinococcus geothermalis str. E50053. prokMSA_id:001413 Y13038 Deinococcus geothermalis str. AG-3a. prokMSA_id:001411 Y13039 Deinococcus geothermalis str. AG-5a. prokMSA_id:001412 Y13040 Deinococcus geothermalis str. RSPS-2a. prokMSA_id:001421 Y15444 Deinococcus geothermalis str. E50053. 2.7.2.2.003 OTU 7 seqs prokMSA_id:097107 AJ585981 Deinococcus sp. AA692 strain AA692 prokMSA_id:095641 AJ585982 Deinococcus sp. AA829 strain AA829 prokMSA_id:097958 AJ585983 Deinococcus sp. AA752 strain AA752 prokMSA_id:096638 AJ585984 Deinococcus sp. AA1444 strain AA1444 prokMSA_id:095404 AJ585985 Deinococcus sp. AA69 strain AA69 prokMSA_id:098059 AJ585986 Deinococcus sp. AA63 strain AA63 prokMSA_id:001419 Y11334 Deinococcus radiopugnans ATCC 19172 . 2.7.2.2.004 OTU 2 seqs prokMSA_id:094705 AJ583206 Deinococcus sp. clone S15B-MN92 prokMSA_id:001418 M21413 Deinococcus radiodurans ATCC 35073. 2.7.2.2.006 OTU 8 seqs prokMSA_id:001424 AB022911 Deinococcus sp. str. MBIC3950. prokMSA_id:025349 AF289089 Deinococcus radiodurans DC prokMSA_id:081042 AJ549111 Deinococcus indica strain Wt/1aT prokMSA_id:097251 AJ585238 Deinococcus grandis prokMSA_id:001426 D78365 Deinococcus sp. str. S34. prokMSA_id:055007 NC_001263 Deinococcus radiodurans chromosome 1 complete prokMSA_id:001422 Y11329 Deinococcus grandis DSM 3963 . prokMSA_id:001417 Y11332 Deinococcus radiodurans DSM 20539 . 2.7.2.2.007 OTU 3 seqs prokMSA_id:001414 Y13041 Deinococcus murrayi str. ALT-1b. prokMSA_id:001416 Y13042 Deinococcus murrayi str. RSG-1.2. prokMSA_id:001415 Y13043 Deinococcus murrayi str. RSPS-7a. 2.7.2.2.008 OTU 1 seq prokMSA_id:001410 Y11333 Deinococcus radiophilus DSM 20551 . 2.7.2.2.009 OTU 1 seq prokMSA_id:001408 Y11331 Deinococcus proteolyticus DSM 20540 . 2.7.2.2.010 OTU 1 seq prokMSA_id:051999 AF239800 Deinococcus-like McMurdo Dry Valley 1 2.7.2.2.011 OTU 1 seq prokMSA_id:062482 AF513964 Deinococci clone LA7-B27N 2.7.2.2.012 OTU 1 seq prokMSA_id:063290 AF523929 clone RCP1-75 2.7.2.2.013 OTU 1 seq prokMSA_id:076969 AY164395 Deinococci clone DLIB-16 2.7.2.2.014 OTU 1 seq prokMSA_id:088400 AY315162 Glacier FJI28 2.7.2.2.999 poor quality 14 seqs prokMSA_id:042622 AB054974 Deinococcus sp. 1172b prokMSA_id:060017 AB084523 ODP-193-27 prokMSA_id:055424 AB084524 ODP-193-43 prokMSA_id:083472 AB097959 cf. Deinococcus sp. ANRS1-1 prokMSA_id:001409 AF018018 clone T2727a. prokMSA_id:001423 AF078299 unnamed organism. prokMSA_id:035252 AF239213 Deinococcus-like south pole 1 prokMSA_id:028410 AF361207 Deinococcus sp. clone SUBT-3 prokMSA_id:023824 AF419289 antarctic soil clone bh8.52 prokMSA_id:056150 AF493295 clone pHS30 prokMSA_id:055385 AF507013 Br-z19 prokMSA_id:098522 AJ585237 Deinococcus sp. PS-IrrK2 strain PS-IrrK2 prokMSA_id:098684 AY424359 Deinococcus grandis P3 prokMSA_id:001425 D28802 unnamed organism. 2.7.2.3 ENVIRONMENTAL_CLONE_OS_M 1 seq 2.7.2.3.999 poor quality 1 seq prokMSA_id:001427 L04708 Octopus Spring microbial mat from Yellowstone NP clone M. 2.7.2.4 ENVIRONMENTAL_CLONE_G29 1 seq 2.7.2.4.999 poor quality 1 seq prokMSA_id:001428 X91281 Bangombe boreholes at depth of 5-105m clone G29. 2.8 ENVIRONMENTAL_CLONE_OPB80_GROUP 94 seqs 2.8.001 OTU 4 seqs prokMSA_id:001438 AB011347 clone TUG19. prokMSA_id:001434 AF027089 clone OPB80. prokMSA_id:001436 AF027090 clone OPB90. prokMSA_id:001437 AF027091 clone OPS142. 2.8.002 OTU 1 seq prokMSA_id:001435 AJ009456 clone SJA-22. 2.8.003 OTU 1 seq prokMSA_id:001432 AJ009504 clone SJA-176. 2.8.004 OTU 1 seq prokMSA_id:001431 AJ009501 clone SJA-171. 2.8.005 OTU 1 seq prokMSA_id:001430 AJ009490 clone SJA-121. 2.8.006 OTU 1 seq prokMSA_id:001429 AF027092 clone OPB50. 2.8.007 OTU 1 seq prokMSA_id:018149 AF316751 Crater Lake CL0-84 2.8.008 OTU 1 seq prokMSA_id:019285 AY037737 earthworm cast clone C134 2.8.009 OTU 1 seq prokMSA_id:024305 AF445117 clone Tc53 2.8.010 OTU 1 seq prokMSA_id:026993 AF422604 clone t034 2.8.011 OTU 1 seq prokMSA_id:032254 AJ292686 WD294 clone WD294 2.8.012 OTU 1 seq prokMSA_id:032711 AF234129 #0319-6E2 2.8.013 OTU 2 seqs prokMSA_id:057714 AF418946 clone HTB7 prokMSA_id:057713 AF418954 clone HTD12 2.8.014 OTU 3 seqs prokMSA_id:058378 AF368186 candidate division OP10 clone SBRT152 prokMSA_id:058377 AF368187 candidate division OP10 clone SBRT161 prokMSA_id:058376 AF368189 candidate division OP10 clone SBRT162 2.8.015 OTU 1 seq prokMSA_id:039143 AJ271048 GC55 2.8.016 OTU 1 seq prokMSA_id:041280 AF254404 UASB_TL26 complete 2.8.017 OTU 1 seq prokMSA_id:041561 AJ271047 CH21 2.8.018 OTU 1 seq prokMSA_id:057715 AF418950 clone HTC12 2.8.019 OTU 4 seqs prokMSA_id:046324 AF445720 firmicute clone SM2D03 prokMSA_id:046343 AF445740 clone SM2G08 prokMSA_id:046234 AF445745 firmicute clone SM2H09 prokMSA_id:079631 AY193116 candidate division OP10 clone QL2B54 2.8.020 OTU 1 seq prokMSA_id:063206 AF524022 clone FW68 2.8.021 OTU 1 seq prokMSA_id:063289 AF523930 clone RCP2-64 2.8.022 OTU 2 seqs prokMSA_id:066825 AF368184 candidate division OP10 clone SBRA136 prokMSA_id:066823 AF368185 candidate division OP10 clone SBRA309 2.8.023 OTU 1 seq prokMSA_id:071249 X84482 SBR1039 2.8.024 OTU 1 seq prokMSA_id:079553 AY188316 clone KD5-31 2.8.025 OTU 1 seq prokMSA_id:080475 AY192276 candidate division OP10 clone W1-4H 2.8.026 OTU 1 seq prokMSA_id:080993 AY192295 Chloroflexi clone P2-11E 2.8.027 OTU 1 seq prokMSA_id:081869 AY214187 clone ZZ12AC2 2.8.028 OTU 1 seq prokMSA_id:085439 AY222300 clone ST01-SN3H 2.8.029 OTU 1 seq prokMSA_id:088820 AY289459 soil clone ABS-629 2.8.030 OTU 2 seqs prokMSA_id:095980 AJ543756 clone 4 prokMSA_id:096473 AJ543757 clone 39 2.8.031 OTU 1 seq prokMSA_id:096627 AY160876 clone COB P5-2 2.8.999 poor quality 52 seqs prokMSA_id:001433 AB011348 clone TUG20. prokMSA_id:043547 AB075782 prokMSA_id:074724 AB075784 prokMSA_id:034162 AB075795 prokMSA_id:045171 AB075796 prokMSA_id:069073 AF107536 SY5-53 prokMSA_id:024312 AF141415 clone CR-PA13 prokMSA_id:001439 AF141535 clone CRE-PA63. prokMSA_id:074847 AF234073 #0319-6H22 prokMSA_id:026265 AF314443 PHOS-HC25 prokMSA_id:042943 AF316746 Crater Lake CL0-1 prokMSA_id:020864 AF316747 Crater Lake CL0-19 prokMSA_id:028633 AF316748 Crater Lake CL0-52 prokMSA_id:039188 AF316749 Crater Lake CL0-68 prokMSA_id:019448 AF316750 Crater Lake CL0-70 prokMSA_id:054658 AF316752 Crater Lake CL0-97 prokMSA_id:024237 AF316753 Crater Lake CL0-108 prokMSA_id:040745 AF316754 Crater Lake CL120-121 prokMSA_id:040457 AF316755 Crater Lake CL500-18 prokMSA_id:044475 AF316756 Crater Lake CL500-38 prokMSA_id:039708 AF392795 clone LBD2 prokMSA_id:028906 AF392796 clone SCF10 prokMSA_id:040993 AF392797 clone CRH2 prokMSA_id:042592 AF428678 clone CRP99-24 prokMSA_id:029228 AF428681 clone CRP99-27 prokMSA_id:032482 AF428848 clone CR98-24-42 prokMSA_id:047292 AF429016 clone CR99-35-58 prokMSA_id:055410 AF429262 clone CR99-2-76 prokMSA_id:075603 AF431604 division OP10 clone C32.33SM prokMSA_id:076136 AF431606 division OP10 clone N41.110PG prokMSA_id:037203 AF445154 clone Tc97 prokMSA_id:067667 AF485395 clone G8 prokMSA_id:037468 AJ232827 clone LBS20 prokMSA_id:039911 AJ232829 clone LBS12 prokMSA_id:028406 AJ233559 clone WR109 prokMSA_id:042910 AJ233566 clone WR173 prokMSA_id:032301 AJ244331 Riz1033 prokMSA_id:042459 AJ292920 WR864 clone WR864 prokMSA_id:035535 AJ292921 WR848 clone WR848 prokMSA_id:078249 AJ517308 DGGE band C4 prokMSA_id:061302 AY043954 division OP10 clone SMW4.131WL prokMSA_id:061299 AY043956 division OP10 clone SMS9.103WL prokMSA_id:080691 AY193112 candidate division OP10 clone QL2B2 prokMSA_id:080154 AY193117 candidate division OP10 clone QL2B25 prokMSA_id:086280 AY214700 candidate division OP10 clone SL2-2-A8F prokMSA_id:083248 AY214778 Gemmatimonadetes clone BB-1-C3 prokMSA_id:085904 AY271757 clone 8 prokMSA_id:097815 AY391663 soil clone M47 prokMSA_id:097865 AY391688 soil clone M72 prokMSA_id:001441 L04707 Octopus Spring microbial mat from Yellowstone NP clone L. prokMSA_id:001440 X67084 clone I25 locus. prokMSA_id:001442 X84482 str. SBR1039. 2.9 LEPTOSPIRILLUM-NITROSPIRA 333 seqs 2.9.1 NITROSPIRA_GROUP 178 seqs 2.9.1.1 NSP.MARINA_SUBGROUP 31 seqs 2.9.1.1.001 OTU 1 seq prokMSA_id:001450 AJ240996 clone Sva0777. 2.9.1.1.002 OTU 2 seqs prokMSA_id:001449 AB015550 Cytophaga sp. str. BD3-8. prokMSA_id:097491 AY375077 clone B58 2.9.1.1.003 OTU 1 seq prokMSA_id:001443 X82559 Nitrospira marina. 2.9.1.1.004 OTU 2 seqs prokMSA_id:062414 AF529101 Gram-positive clone FTL272 prokMSA_id:098370 AY186072 clone EA1B8 small subunit 2.9.1.1.005 OTU 1 seq prokMSA_id:065878 AF507447 soil clone C097 2.9.1.1.006 OTU 1 seq prokMSA_id:070898 AJ347039 clone TK24 2.9.1.1.007 OTU 2 seqs prokMSA_id:075438 AJ519405 Nitrospira sp. clone JG37-AG-131 prokMSA_id:076201 AJ519620 clone JG37-AG-70 2.9.1.1.008 OTU 1 seq prokMSA_id:094439 AY373422 clone A93 complete 2.9.1.1.999 poor quality 20 seqs prokMSA_id:077219 AB075051 clone:KCS8 prokMSA_id:001448 AF186446 clone WS58. prokMSA_id:001447 AF186449 clone WS62. prokMSA_id:001446 AF186451 clone WS65. prokMSA_id:001445 AF186454 clone WS69. prokMSA_id:001444 AF186456 clone WS73. prokMSA_id:031187 AF194185 n4r prokMSA_id:017438 AF226234 maize root Zmrc211 prokMSA_id:048340 AF332295 clone T26-9 prokMSA_id:021151 AF332296 clone T26-16 prokMSA_id:050016 AF332306 clone T26-17 prokMSA_id:020941 AF332330 clone C26-14 prokMSA_id:023586 AF332334 clone C26-8 prokMSA_id:068046 AF365703 clone BT60DS1BE1 prokMSA_id:067938 AF365835 clone BT60PA10BD6 prokMSA_id:067908 AF365866 clone BT60PA9BF10 prokMSA_id:036395 AF434964 sponge symbiont JACN1 prokMSA_id:068996 AY034845 PU1 prokMSA_id:087253 AY283128 Nitrospirae clone NS-08 prokMSA_id:001451 L35501 Nitrospira marina str. Nb-295. 2.9.1.2 NSP.MOSCOVIENSIS_SUBGROUP 147 seqs 2.9.1.2.003 OTU 28 seqs prokMSA_id:041388 AB064685 clone:NK207 prokMSA_id:032540 AB064688 clone:NK211 prokMSA_id:001490 AF035813 Nitrospira sp. prokMSA_id:001491 AF155152 Nitrospira cf. moscoviensis SBR1015 str. SBR1015. prokMSA_id:001492 AF155153 Nitrospira cf. moscoviensis SBR1024 str. SBR1024. prokMSA_id:001494 AF155155 Nitrospira cf. moscoviensis SBR2046 str. SBR2046. prokMSA_id:038830 AF293010 Green Bay ferromanganous micronodule MNC2 prokMSA_id:046321 AF293011 Green Bay ferromanganous micronodule MNB2 prokMSA_id:052821 AF293012 Green Bay ferromanganous micronodule MNF8 prokMSA_id:038675 AF293013 Green Bay ferromanganous micronodule MNA3 prokMSA_id:060596 AF407702 clone G19 prokMSA_id:050234 AF418966 clone HT2BB6 prokMSA_id:068704 AF485343 clone CCU23 complete prokMSA_id:001495 AJ007648 clone 1404-16. prokMSA_id:001496 AJ007652 clone 1405-19. prokMSA_id:001472 AJ224039 Nitrospira sp. prokMSA_id:001475 AJ224042 Nitrospira sp. prokMSA_id:001477 AJ224044 Nitrospira sp. prokMSA_id:021416 AJ252684 Rhizosphere soil clone RSC-II-52 prokMSA_id:089880 AJ577311 clone 130 prokMSA_id:093640 AJ582041 Nitrospira sp. clone JG36-GS-2 prokMSA_id:041023 AY037616 soil clone S096 prokMSA_id:085357 AY221079 clone CCU23 prokMSA_id:088698 AY328715 DSSD16 prokMSA_id:089259 AY328743 DSSD45 prokMSA_id:088224 AY328760 DSSD62 prokMSA_id:001456 X82558 Nitrospira moscoviensis str. M-1 DSM 10035. prokMSA_id:001468 Y14644 Nitrospira sp. 2.9.1.2.004 OTU 19 seqs prokMSA_id:001480 AF033558 clone A-11. prokMSA_id:001481 AF033559 clone A-4. prokMSA_id:001493 AF155154 Nitrospira cf. moscoviensis SBR2016 str. SBR2016. prokMSA_id:019768 AF314422 PHOS-HE34 prokMSA_id:001471 AJ224038 Nitrospira sp. prokMSA_id:001473 AJ224040 Nitrospira sp. prokMSA_id:001474 AJ224041 Nitrospira sp. prokMSA_id:001476 AJ224043 Nitrospira sp. prokMSA_id:001478 AJ224045 Nitrospira sp. prokMSA_id:001479 AJ224046 Nitrospira sp. prokMSA_id:076213 AY150907 Nitrospira sp. clone WYO26C prokMSA_id:001460 Y14636 Nitrospira sp. prokMSA_id:001461 Y14637 Nitrospira sp. prokMSA_id:001462 Y14638 Nitrospira sp. prokMSA_id:001463 Y14639 Nitrospira sp. prokMSA_id:001464 Y14640 Nitrospira sp. prokMSA_id:001465 Y14641 Nitrospira sp. prokMSA_id:001466 Y14642 Nitrospira sp. prokMSA_id:001467 Y14643 Nitrospira sp. 2.9.1.2.005 OTU 1 seq prokMSA_id:001458 AF145866 clone K20-78. 2.9.1.2.006 OTU 1 seq prokMSA_id:001457 AF145869 clone K20-81. 2.9.1.2.007 OTU 2 seqs prokMSA_id:044024 AF234694 sludge A31 prokMSA_id:052208 AF234723 sludge S47 2.9.1.2.008 OTU 1 seq prokMSA_id:047795 AF422590 clone t015 2.9.1.2.009 OTU 1 seq prokMSA_id:065688 AF507695 soil clone S0126 2.9.1.2.010 OTU 1 seq prokMSA_id:088293 AJ567599 clone MBAE49 2.9.1.2.011 OTU 1 seq prokMSA_id:098631 AY186068 clone EA1B1 small subunit 2.9.1.2.999 poor quality 92 seqs prokMSA_id:080233 AB089950 clone:HN60 prokMSA_id:001487 AF010059 unnamed organism. prokMSA_id:001488 AF010062 unnamed organism. prokMSA_id:001489 AF010096 unnamed organism. prokMSA_id:048545 AF078453 Grassland soil clone sl3_824 prokMSA_id:001486 AF128668 clone C0209. prokMSA_id:001485 AF128670 clone S004. prokMSA_id:030829 AF128675 soil S0126 prokMSA_id:001484 AF128690 clone S075. prokMSA_id:001483 AF128729 clone C059. prokMSA_id:001482 AF175639 clone WJGRT-122. prokMSA_id:023227 AF332301 clone T26-15 prokMSA_id:017371 AF332345 clone C26-12 prokMSA_id:028626 AF337199 clone LCo23 prokMSA_id:073144 AF351228 Nitrospira sp. clone 4-11 prokMSA_id:032159 AF353288 Tui1-37 prokMSA_id:039782 AF420301 prokMSA_id:054722 AF429031 clone CR99-35-73 prokMSA_id:027503 AF429033 clone CR99-35-75 prokMSA_id:018669 AF440288 clone PO8 prokMSA_id:062847 AF454652 Nsr_R1-1 prokMSA_id:062846 AF454654 Nsr_R2-2 prokMSA_id:062842 AF454655 Nsr_R2-3 prokMSA_id:062845 AF454656 Nsr_R2-4 prokMSA_id:062844 AF454657 Nsr_R2-5 prokMSA_id:062843 AF454658 Nsr_R2-6 prokMSA_id:056719 AF454659 Nsr_R2-8 prokMSA_id:062841 AF454663 Nsr_LWCE-1 prokMSA_id:055600 AF454664 Nsr_LWCE-2 prokMSA_id:067294 AF495393 clone F10.23 prokMSA_id:067234 AF495453 clone T18 prokMSA_id:067096 AF499363 clone JCL9-22 prokMSA_id:067039 AF499432 clone BL-59 prokMSA_id:065664 AF507727 soil clone S136 prokMSA_id:058801 AF540049 Nitrospirae DGGE gel band ESR BR 14 prokMSA_id:058791 AF540054 Nitrospirae DGGE gel band ESR BR 19 prokMSA_id:001470 AJ005878 clone TRS23. prokMSA_id:001459 AJ232865 clone LRE29. prokMSA_id:072566 AJ421160 clone C6-K31 prokMSA_id:034483 AJ421201 clone C3-K5 prokMSA_id:074172 AJ421207 clone C4-K18 prokMSA_id:057305 AJ518139 clone Mul01-87 prokMSA_id:057288 AJ518175 clone Mul1P2-62 prokMSA_id:057294 AJ518185 clone Mul2P1-11 prokMSA_id:057282 AJ518201 clone Mul2P1-48 prokMSA_id:055696 AJ518386 clone Neu4P1-67 prokMSA_id:057142 AJ518389 clone Neu4P1-72 prokMSA_id:057105 AJ518433 clone Neu4P3-38 prokMSA_id:057095 AJ518441 clone Neu4P3-54 prokMSA_id:056850 AJ518754 clone Sai4P3-89 prokMSA_id:076727 AJ534638 Nitrospirae clone JG36-TzT-13 prokMSA_id:040170 AY037608 soil clone S085 prokMSA_id:043366 AY037639 soil clone S131 prokMSA_id:035512 AY037649 soil clone S146 prokMSA_id:049206 AY037650 soil clone S147 prokMSA_id:018492 AY037745 earthworm cast clone C143 prokMSA_id:036282 AY048952 DW_NsrC7-2 prokMSA_id:021305 AY048953 DW_NsrC7-3 prokMSA_id:021523 AY048954 DW_NsrC7-4 prokMSA_id:048700 AY048955 DW_NsrC7-5 prokMSA_id:046299 AY048956 DW_NsrC7-6 prokMSA_id:019250 AY048957 DW_NsrE7-1 prokMSA_id:051338 AY048958 DW_NsrE7-4 prokMSA_id:049060 AY048959 DW_NsrE7-9 prokMSA_id:052809 AY048960 DW_NsrE7-10 prokMSA_id:035219 AY048961 DW_NsrB8-6-1 prokMSA_id:030140 AY048962 DW_NsrB8-6-2 prokMSA_id:034885 AY048963 DW_NsrB8-6-3 prokMSA_id:074633 AY048964 DW_NsrB8-6-5 prokMSA_id:035655 AY048965 DW_NsrB8-6-6 prokMSA_id:040660 AY048966 DW_NsrB8-6-8 prokMSA_id:021758 AY048967 DW_NsrB8-6-9 prokMSA_id:020865 AY048968 DW_NsrB8-6-10 prokMSA_id:071950 AY143735 Nitrospira sp. clone V25 prokMSA_id:093842 AY145869 Nitrospirae isolate DGGE band RWA12 prokMSA_id:069617 AY146671 Nitrospirales K21 prokMSA_id:096066 AY147385 Nitrospiraceae Wd13 prokMSA_id:097274 AY147386 Nitrospiraceae Wd14 prokMSA_id:079552 AY186802 clone unel1 prokMSA_id:080038 AY192280 Nitrospirae clone P1-7H prokMSA_id:083804 AY214641 Nitrospirae clone SL2-1-D11 prokMSA_id:083632 AY214712 Nitrospirae clone SL2-2-E7F prokMSA_id:083987 AY214797 Nitrospirae clone BB-2-H11 prokMSA_id:085349 AY214917 Nitrospirae clone BAC-P85F4 prokMSA_id:093425 AY361937 clone P8-GEN-29 prokMSA_id:096843 AY391652 soil clone M36 prokMSA_id:001454 X84460 unnamed organism. prokMSA_id:001455 X84468 str. SBR1024. prokMSA_id:001452 X84499 str. SBR1065. prokMSA_id:001497 X84560 str. SBR2016. prokMSA_id:001453 X84584 str. SBR2046. prokMSA_id:001469 Y11630 clone 612. 2.9.2 STR.SBR1108 2 seqs 2.9.2.001 OTU 1 seq prokMSA_id:032174 AF269004 SBR1108 2.9.2.999 poor quality 1 seq prokMSA_id:001498 X84534 str. SBR1108. 2.9.3 LEPTOSPIRILLUM_GROUP 65 seqs 2.9.3.1 LPP.FERROOXIDANS_SUBGROUP 59 seqs 2.9.3.1.001 OTU 11 seqs prokMSA_id:001510 AF047641 clone TRA1-10. prokMSA_id:028578 AF356832 Leptospirillum ferrooxidans strain 49879 complete prokMSA_id:041859 AF356833 Leptospirillum ferrooxidans strain BCT2 complete prokMSA_id:017118 AF356834 Leptospirillum ferrooxidans strain CF12 complete prokMSA_id:024590 AF356835 Leptospirillum ferrooxidans strain Chil-Lf2 complete prokMSA_id:017578 AF356837 Leptospirillum ferrooxidans strain P3a complete prokMSA_id:030465 AF356838 Leptospirillum ferrooxidans strain Parys complete prokMSA_id:039980 AF356839 Leptospirillum ferrooxidans strain Sy complete prokMSA_id:040142 AF376016 Leptospirillum sp. NOen1 prokMSA_id:058308 AF543510 clone BA39 prokMSA_id:001509 X86776 Leptospirillum ferrooxidans. 2.9.3.1.004 OTU 1 seq prokMSA_id:056204 AF543509 clone BA33 2.9.3.1.005 OTU 5 seqs prokMSA_id:029477 AF225452 SC02 prokMSA_id:038933 AF225453 SC07 prokMSA_id:039719 AF225454 SC17 prokMSA_id:058316 AF543500 clone AW1 prokMSA_id:058311 AF543502 clone AW5 2.9.3.1.008 OTU 19 seqs prokMSA_id:045840 AF225449 BA24 prokMSA_id:054636 AF225455 SC28 prokMSA_id:039717 AF356829 Leptospirillum ferriphilum strain ATCC 49881 prokMSA_id:029535 AF356830 Leptospirillum ferriphilum strain Fairview prokMSA_id:050647 AF356831 Leptospirillum ferriphilum strain Warwick prokMSA_id:028124 AF460981 Leptospirillum sp. K01 prokMSA_id:043208 AF460983 Leptospirillum sp. K16 prokMSA_id:056048 AF513709 Leptospirillum sp. MT6 prokMSA_id:063292 AF523926 clone RCP2-41 prokMSA_id:058314 AF543503 clone AW11 prokMSA_id:038928 AJ237902 Leptospirillum sp. isolate LA prokMSA_id:038108 AJ237903 Leptospirillum sp. strain DSM 2391 prokMSA_id:034533 AJ295685 Leptospirillum ferrooxidans strain TzT-B1-K3 prokMSA_id:038542 AJ295686 Leptospirillum ferrooxidans strain TzT-B1-K4 prokMSA_id:041525 AJ295687 Leptospirillum sp. TzT-JG-24 prokMSA_id:029635 AJ295688 Leptospirillum sp. TzT-JG-3 prokMSA_id:001500 M79383 Leptospirillum sp. DSM 2391. prokMSA_id:001503 X72852 Leptospirillum ferrooxidans. prokMSA_id:001507 X86773 clone cOS7. 2.9.3.1.009 OTU 1 seq prokMSA_id:058307 AF543511 clone BA41 2.9.3.1.010 OTU 1 seq prokMSA_id:076626 AJ532725 clone JG34-KF-252 2.9.3.1.011 OTU 1 seq prokMSA_id:077042 AJ519639 actinobacterium clone Sh765B-AG-45 2.9.3.1.012 OTU 1 seq prokMSA_id:098706 AY186069 clone EA1G3 small subunit 2.9.3.1.999 poor quality 19 seqs prokMSA_id:073956 AH001682 Leptospirillum sp. LfLa prokMSA_id:070388 AH001683 Leptospirillum ferrooxidans Z2 prokMSA_id:070259 AJ295693 Leptospirillum sp. TzT-JG-7 prokMSA_id:076405 AJ517362 Leptospirillum sp. DGGE band B6 prokMSA_id:071119 AJ517441 Leptospirillum sp. isolate DGGE B27 prokMSA_id:070121 AJ517442 Leptospirillum sp. isolate DGGE B28 prokMSA_id:057426 AJ517443 Leptospirillum sp. isolate DGGE B42 prokMSA_id:057424 AJ517444 Leptospirillum sp. isolate DGGE B43 prokMSA_id:092752 AY339398 Leptospirillum ferriphilum prokMSA_id:001502 M79384 Leptospirillum sp. str. LfLa. prokMSA_id:071797 M79385 Leptospirillum sp. LfLa prokMSA_id:071999 M79386 Leptospirillum sp. LfLa prokMSA_id:001508 M79441 Leptospirillum ferrooxidans str. Z2 ATCC 29047. prokMSA_id:074448 M79442 Leptospirillum ferrooxidans Z2 prokMSA_id:001504 X86770 clone cOS4. prokMSA_id:001499 X86772 clone cOS17. prokMSA_id:001505 X91228 Leptospirillum ferrooxidans str. EPA15. prokMSA_id:001506 X91229 Leptospirillum ferrooxidans str. EPA15. prokMSA_id:001501 X91230 Leptospirillum ferrooxidans str. EPA15. 2.9.3.2 ENVIRONMENTAL_CLONE_C0S62 6 seqs 2.9.3.2.001 OTU 1 seq prokMSA_id:001511 X86774 clone cOS62. 2.9.3.2.002 OTU 5 seqs prokMSA_id:054251 AF225448 BA29 prokMSA_id:063295 AF523924 clone RCP1-70 prokMSA_id:063293 AF523925 clone RCP2-12 prokMSA_id:058317 AF543501 clone AW4 prokMSA_id:058150 AF544226 clone ASL9 2.9.4 TDV.YELLOWSTONII_GROUP 88 seqs 2.9.4.003 OTU 10 seqs prokMSA_id:001521 AB011332 clone TUG4. prokMSA_id:001522 AB011333 clone TUG5. prokMSA_id:001530 AB021302 Thermodesulfovibrio TGE-P1 str. TGE-P1. prokMSA_id:001531 AB021303 Thermodesulfovibrio TGL-LS1 str. TGL-LS1. prokMSA_id:001532 AB021304 Thermodesulfovibrio TSL-P1 str. TSL-P1. prokMSA_id:001518 AF027002 clone OPT35. prokMSA_id:027466 AF255602 Nitrospira sp. SRI-237 prokMSA_id:046856 AF255603 Nitrospira sp. SRI-9 prokMSA_id:023948 AF402981 Nitrospira sp. clone prokMSA_id:001523 X96726 Thermodesulfovibrio islandicus str. R1ha3. 2.9.4.004 OTU 1 seq prokMSA_id:001529 AF027001 clone OPB67A. 2.9.4.005 OTU 1 seq prokMSA_id:001528 L22045 clone OPI-2. 2.9.4.006 OTU 1 seq prokMSA_id:001526 AB015536 str. BD2-6. 2.9.4.007 OTU 2 seqs prokMSA_id:001524 AB004577 clone TG25. prokMSA_id:001525 AB004578 clone TG33. 2.9.4.008 OTU 1 seq prokMSA_id:001513 X71838 Magnetobacterium bavaricum. 2.9.4.009 OTU 1 seq prokMSA_id:023433 AF320959 Lake Michigan sediment LMBA44 2.9.4.010 OTU 1 seq prokMSA_id:023713 AF328215 clone KS81 2.9.4.011 OTU 1 seq prokMSA_id:029377 AF234132 #0319-6G9 2.9.4.012 OTU 1 seq prokMSA_id:030232 AF424404 Nitrospira group MERTZ_2CM_109 2.9.4.013 OTU 2 seqs prokMSA_id:063220 AF524006 clone FW27 prokMSA_id:034433 AY050588 clone GOUTA19 2.9.4.014 OTU 1 seq prokMSA_id:043630 AF361215 Nitrospira sp. clone SUBT-7 2.9.4.015 OTU 1 seq prokMSA_id:044346 AF234126 #0319-6A21 2.9.4.016 OTU 1 seq prokMSA_id:045740 AF424406 Nitrospira group MERTZ_21CM_370 2.9.4.017 OTU 2 seqs prokMSA_id:050537 AF349765 DCE29 prokMSA_id:091481 AY340834 clone SR_FBR_L1 2.9.4.020 OTU 3 seqs prokMSA_id:051852 AF286037 Saltmarsh clone LCP-6 prokMSA_id:063221 AF524005 clone FW19 prokMSA_id:063218 AF524008 clone FW114 2.9.4.021 OTU 2 seqs prokMSA_id:063223 AF524004 clone FW5 prokMSA_id:063219 AF524007 clone FW71 2.9.4.022 OTU 1 seq prokMSA_id:063224 AF524003 clone FW118 2.9.4.023 OTU 1 seq prokMSA_id:066092 AB074959 Nitrospira group clone:KB4 2.9.4.024 OTU 1 seq prokMSA_id:075520 AJ534688 Nitrospirae clone S15A-MN131 2.9.4.025 OTU 1 seq prokMSA_id:075704 AJ519402 actinobacterium clone JG37-AG-121 2.9.4.026 OTU 1 seq prokMSA_id:077126 AJ534687 Nitrospirae clone S15A-MN30 2.9.4.027 OTU 1 seq prokMSA_id:079386 AB100014 sequences clone: IndB4-27 2.9.4.028 OTU 1 seq prokMSA_id:079447 AB099988 sequences clone: IheB3-31 2.9.4.029 OTU 1 seq prokMSA_id:088567 AY297986 clone TA55_Ba_137 2.9.4.030 OTU 1 seq prokMSA_id:092200 AY354153 clone pIR3BH12 2.9.4.031 OTU 1 seq prokMSA_id:092255 AY354168 clone pIR3BB12 2.9.4.999 poor quality 46 seqs prokMSA_id:001514 AB005840 clone SA2. prokMSA_id:001520 AB011296 clone MUG4. prokMSA_id:079296 AB099986 sequences clone: IheB3-8 prokMSA_id:069057 AF009998 prokMSA_id:001533 AF016756 unnamed organism. prokMSA_id:001519 AF027003 clone OPT37. prokMSA_id:056073 AF078285 Grassland soil clone saf3_018 prokMSA_id:001515 AF107319 str. LCK-15. prokMSA_id:001516 AF107321 str. LCK-23. prokMSA_id:022370 AF194203 delta n14r prokMSA_id:052356 AF320960 Lake Michigan sediment LMBA44 prokMSA_id:047555 AF321208 wpd_22 prokMSA_id:047903 AF328196 clone KS56f prokMSA_id:052153 AF332298 clone T26-8 prokMSA_id:024925 AF349764 TCE65 prokMSA_id:048185 AF429008 clone CR99-35-50 prokMSA_id:022847 AF429178 clone CR99-24-68 prokMSA_id:040658 AF432312 firmicute 0%N-6d-20 prokMSA_id:067282 AF495404 clone F10.43 prokMSA_id:065895 AF507430 soil clone C013 prokMSA_id:056609 AF507546 soil clone S0209 prokMSA_id:059434 AF540830 clone DP10-5 prokMSA_id:059432 AF540831 clone DP10-6 prokMSA_id:059433 AF540832 clone DP10u27 prokMSA_id:073641 AH010201 Lake Michigan sediment LMBA9 prokMSA_id:070970 AH010203 Lake Michigan sediment LMBA28 prokMSA_id:050801 AH010204 Lake Michigan sediment LMBA30 prokMSA_id:028671 AH010354 Lake Michigan sediment LMBA44 and genes prokMSA_id:001517 AJ232837 clone LBS25. prokMSA_id:031394 AJ238368 DGGE band 5 prokMSA_id:048227 AJ302943 GR-WP54-3 16 prokMSA_id:062528 AJ504604 isolate P2CN66 prokMSA_id:057249 AJ518246 clone Mul2P2-49 prokMSA_id:057231 AJ518270 clone Mul2P2-92 prokMSA_id:056959 AJ518615 clone Qui4P2-92 prokMSA_id:056960 AJ518616 clone Qui4P2-95 prokMSA_id:072796 AY012522 Lake Michigan sediment LMBA9 prokMSA_id:072175 AY012526 Lake Michigan sediment LMBA28 prokMSA_id:074237 AY012527 Lake Michigan sediment LMBA28 prokMSA_id:028942 AY012528 Lake Michigan sediment LMBA30 prokMSA_id:047406 AY012529 Lake Michigan sediment LMBA30 prokMSA_id:083404 AY214836 Bacteroidetes clone BB-2-E12F prokMSA_id:091175 AY340859 isolate DGGE fragment SR_FBR_L1 prokMSA_id:001534 D26252 soil from paddy field clone PAD65. prokMSA_id:001512 L14619 Thermodesulfovibrio yellowstonii str. YP87 ATCC 51303 . prokMSA_id:001527 X91477 AEspoe hard rock 10-626m below ground surface clone A54n. 2.10 PROSTHECOBACTER_GROUP 679 seqs 2.10.1 ENVIRONMENTAL_CLONE_WCHB1-41_SUBGROUP 107 seqs 2.10.1.001 OTU 1 seq prokMSA_id:001547 AJ241008 clone Sva0500. 2.10.1.002 OTU 1 seq prokMSA_id:001546 AB015546 str. BD2-18. 2.10.1.003 OTU 1 seq prokMSA_id:001545 AF146236 clone CLEAR-12. 2.10.1.004 OTU 1 seq prokMSA_id:001544 AF142872 clone BURTON-54. 2.10.1.005 OTU 1 seq prokMSA_id:001543 AJ241016 clone Sva0107a. 2.10.1.006 OTU 2 seqs prokMSA_id:031745 AF275917 AA08 prokMSA_id:001542 U81755 clone vadinHB65. 2.10.1.007 OTU 1 seq prokMSA_id:001541 U81707 clone vadinBE97. 2.10.1.008 OTU 1 seq prokMSA_id:001540 AF050560 clone WCHB1-41. 2.10.1.009 OTU 1 seq prokMSA_id:001539 AF146249 clone CLEAR-26. 2.10.1.010 OTU 1 seq prokMSA_id:001538 AF001775 clone RFP12. 2.10.1.011 OTU 1 seq prokMSA_id:001537 AF050559 clone WCHB1-25. 2.10.1.012 OTU 1 seq prokMSA_id:001536 AF050558 clone WCHA1-80. 2.10.1.013 OTU 1 seq prokMSA_id:001535 AF050557 clone WCHA1-33. 2.10.1.014 OTU 1 seq prokMSA_id:019145 AJ297465 verrucomicrobiales Sva0530 2.10.1.015 OTU 1 seq prokMSA_id:022195 AF224865 clone Car68rc 2.10.1.016 OTU 1 seq prokMSA_id:022296 AJ297461 verrucomicrobiales Sva0821 2.10.1.017 OTU 1 seq prokMSA_id:024730 AF424510 Verrucomicrobia MERTZ_2CM_293 2.10.1.018 OTU 1 seq prokMSA_id:025675 AF424514 Verrucomicrobia MERTZ_21CM_62 2.10.1.019 OTU 1 seq prokMSA_id:025775 AF424509 Verrucomicrobia MERTZ_2CM_283 2.10.1.020 OTU 1 seq prokMSA_id:070602 AF419674 a2b018 2.10.1.021 OTU 1 seq prokMSA_id:030370 AF224781 clone Car108fb 2.10.1.022 OTU 2 seqs prokMSA_id:033164 AJ408101 equine intestinal sp. DL14 clone DL14 prokMSA_id:045703 AJ408224 equine intestinal sp. PL16 clone PL16 2.10.1.023 OTU 1 seq prokMSA_id:033256 AJ401113 verrucomicrobium DEV045 clone DEV045 2.10.1.024 OTU 1 seq prokMSA_id:035755 AB056675 equine intestinal clone:YT6 2.10.1.025 OTU 1 seq prokMSA_id:037080 AJ297463 verrucomicrobiales Sva0585 2.10.1.026 OTU 1 seq prokMSA_id:037973 AJ390453 soil PBS-III-20 2.10.1.027 OTU 1 seq prokMSA_id:038307 AF224823 clone Car98rb 2.10.1.028 OTU 1 seq prokMSA_id:039097 AJ401121 verrucomicrobium DEV055 clone DEV055 2.10.1.029 OTU 1 seq prokMSA_id:039740 AF424507 Verrucomicrobia MERTZ_2CM_235 2.10.1.030 OTU 1 seq prokMSA_id:042197 AF424312 MERTZ_2CM_350 2.10.1.031 OTU 1 seq prokMSA_id:043552 AF328193 clone KS52 2.10.1.032 OTU 1 seq prokMSA_id:044416 AJ408099 equine intestinal sp. DL12 clone DL12 2.10.1.033 OTU 1 seq prokMSA_id:045152 AJ297462 verrucomicrobiales Sva0700 2.10.1.034 OTU 1 seq prokMSA_id:055319 AY049713 Victivallis vadensis complete 2.10.1.035 OTU 5 seqs prokMSA_id:061856 AF449255 Verrucomicrobia clone R76-B128 prokMSA_id:061854 AF449256 Verrucomicrobia clone R76-B66 prokMSA_id:061853 AF449257 Verrucomicrobia clone R76-B18 prokMSA_id:061852 AF449258 Verrucomicrobia clone R103-B35 prokMSA_id:057459 AJ441224 Verrucomicrobia clone P. palm C 136 2.10.1.036 OTU 1 seq prokMSA_id:057442 AJ441244 Verrucomicrobia clone P. palm A 228 2.10.1.037 OTU 1 seq prokMSA_id:049769 AF211330 Verrucomicrobia MT56 2.10.1.038 OTU 1 seq prokMSA_id:069582 AJ390455 soil PBS-III-26 2.10.1.039 OTU 1 seq prokMSA_id:052157 AF424508 Verrucomicrobia MERTZ_2CM_245 2.10.1.040 OTU 1 seq prokMSA_id:059760 AY133435 clone OB3_167 2.10.1.041 OTU 2 seqs prokMSA_id:059761 AY133433 clone OB3_232 prokMSA_id:059762 AY133434 clone OB3_80 2.10.1.042 OTU 4 seqs prokMSA_id:063828 AF454309 Verrucomicrobia clone ML1228J-2 prokMSA_id:063827 AF454310 Verrucomicrobia clone ML316M-1 prokMSA_id:062664 AF507898 Verrucomicrobia clone ML623J-15 prokMSA_id:062661 AF507899 Verrucomicrobia clone ML635J-52 2.10.1.043 OTU 1 seq prokMSA_id:062665 AF507896 Verrucomicrobia clone ML635J-35 2.10.1.044 OTU 1 seq prokMSA_id:063770 AY114336 Verrucomicrobia clone LD1-PB9 2.10.1.045 OTU 1 seq prokMSA_id:063771 AY114334 Verrucomicrobia clone LD1-PB20 2.10.1.046 OTU 1 seq prokMSA_id:063772 AY114335 Verrucomicrobia clone LD1-PB3 2.10.1.047 OTU 1 seq prokMSA_id:063774 AY114333 Verrucomicrobia clone LD1-PB2 2.10.1.048 OTU 1 seq prokMSA_id:063776 AY114330 Verrucomicrobia clone LD1-PB12 2.10.1.049 OTU 1 seq prokMSA_id:063777 AY114329 Verrucomicrobia clone LD1-PB1 2.10.1.050 OTU 2 seqs prokMSA_id:063784 AY114322 Verrucomicrobia clone LD1-PA34 prokMSA_id:063783 AY114323 Verrucomicrobia clone LD1-PA37 2.10.1.051 OTU 1 seq prokMSA_id:063790 AY114314 Verrucomicrobia clone LD1-PA20 2.10.1.052 OTU 1 seq prokMSA_id:063929 AF424448 candidate division OP11 MERTZ_21CM_109 2.10.1.053 OTU 1 seq prokMSA_id:065673 AF507713 soil clone S166 2.10.1.054 OTU 1 seq prokMSA_id:067843 AY082462 Verrucomicrobia clone 44a-B1-27 2.10.1.055 OTU 1 seq prokMSA_id:070013 AY114328 Verrucomicrobia clone LD1-PA50 2.10.1.056 OTU 1 seq prokMSA_id:070641 AY114320 Verrucomicrobia clone LD1-PA31 2.10.1.057 OTU 1 seq prokMSA_id:071809 AY114317 Verrucomicrobia clone LD1-PA26 2.10.1.058 OTU 1 seq prokMSA_id:072268 AY114312 Verrucomicrobia clone LD1-PA15 2.10.1.059 OTU 1 seq prokMSA_id:075394 AY164367 Verrucomicrobia clone BLIB-19 2.10.1.060 OTU 1 seq prokMSA_id:075919 AY164394 Verrucomicrobia clone DLIB-15 2.10.1.061 OTU 3 seqs prokMSA_id:076381 AY164354 Verrucomicrobia clone ALIB-68 prokMSA_id:076229 AY164380 Verrucomicrobia clone BLIB-55 prokMSA_id:082502 AY226294 Verrucomicrobia clone DBBB-43 2.10.1.062 OTU 1 seq prokMSA_id:077165 AY164404 clone DLIB-30 2.10.1.063 OTU 1 seq prokMSA_id:085950 AY226257 clone BBBB-57 2.10.1.064 OTU 1 seq prokMSA_id:088298 AY315319 rumen clone JRCJ23 2.10.1.065 OTU 1 seq prokMSA_id:088776 AY311643 clone YRCC05 2.10.1.066 OTU 1 seq prokMSA_id:089040 AY315375 rumen clone JRCK51 2.10.1.067 OTU 1 seq prokMSA_id:089157 AY315343 rumen clone JRCK04 2.10.1.068 OTU 1 seq prokMSA_id:089938 AY311740 clone YRCE39 2.10.1.069 OTU 1 seq prokMSA_id:090558 AY315355 rumen clone JRCK22 2.10.1.070 OTU 1 seq prokMSA_id:091151 AY345504 clone W4-B19 2.10.1.071 OTU 1 seq prokMSA_id:097002 AJ536842 clone 362 2.10.1.999 poor quality 23 seqs prokMSA_id:031542 AB003445 prokMSA_id:038330 AF211331 Verrucomicrobia MT29 prokMSA_id:038326 AF296191 SY6-8 prokMSA_id:027546 AF332302 clone T26-13 prokMSA_id:068171 AF365561 clone BT49MF4BD11 prokMSA_id:036881 AF424506 Verrucomicrobia MERTZ_2CM_205 prokMSA_id:062660 AF507897 Verrucomicrobia clone ML623J-33 prokMSA_id:059451 AF540804 clone dp11-14 prokMSA_id:052361 AJ437456 clone 1_32_317 prokMSA_id:057133 AJ518402 clone Neu4P2-10 prokMSA_id:057017 AJ518545 clone Qui4P1-54 prokMSA_id:056985 AJ518585 clone Qui4P2-44 prokMSA_id:056978 AJ518594 clone Qui4P2-58 prokMSA_id:085524 AY197386 clone B01R017 prokMSA_id:082977 AY226274 Verrucomicrobia clone BBBB-96 prokMSA_id:089741 AY311634 clone YRCB50 prokMSA_id:089922 AY311650 clone YRCC15 prokMSA_id:089967 AY311720 clone YRCE10 prokMSA_id:088307 AY315280 rumen clone JRCI36 prokMSA_id:090578 AY315320 rumen clone JRCJ25 prokMSA_id:089917 AY315344 rumen clone JRCK06 prokMSA_id:091574 AY344442 clone K60-18 prokMSA_id:001548 X91474 clone A51p. 2.10.2 VER.SP_STR_VEGLC2_SUBGROUP 106 seqs 2.10.2.001 OTU 1 seq prokMSA_id:001566 X97110 clone TM18. 2.10.2.002 OTU 1 seq prokMSA_id:001565 U62856 clone RB39. 2.10.2.003 OTU 11 seqs prokMSA_id:060789 AF491666 Verrucomicrobiales clone SFD1-27 prokMSA_id:065909 AF507412 soil clone C0205 prokMSA_id:052931 AJ229212 from anoxic bulk soil clone BSV64 prokMSA_id:047141 AJ229213 from anoxic bulk soil clone BSV65 prokMSA_id:001561 AJ229235 str. PB90-1. prokMSA_id:001562 AJ229239 str. PB90-3. prokMSA_id:001563 AJ229246 str. ACB90. prokMSA_id:089313 AY297806 Verrucomicrobiae pACH90 prokMSA_id:001549 X99390 Verrucomicrobium sp. str. VeGlc2. prokMSA_id:001558 X99391 str. VeCb1. prokMSA_id:001559 X99392 str. VeSm13. 2.10.2.004 OTU 1 seq prokMSA_id:001556 U81738 clone vadinHA64. 2.10.2.005 OTU 1 seq prokMSA_id:001554 AF142902 clone EKHO-20. 2.10.2.006 OTU 4 seqs prokMSA_id:001550 AF159645 clone HstpL11. prokMSA_id:001551 AF159646 clone HstpL20. prokMSA_id:001552 AF159647 clone HstpL53. prokMSA_id:001553 AF159648 clone HstpL65. 2.10.2.007 OTU 1 seq prokMSA_id:056258 AF075271 Alterococcus agarolyticus complete 2.10.2.008 OTU 1 seq prokMSA_id:017862 AB034150 rumen 2C28d-9 2.10.2.009 OTU 1 seq prokMSA_id:018774 AB062814 clone:BCf3-05 2.10.2.010 OTU 1 seq prokMSA_id:019561 AY037575 soil clone S040 2.10.2.011 OTU 1 seq prokMSA_id:024447 Y19169 Epixenosomes of Euplotidium arenarium 2.10.2.013 OTU 2 seqs prokMSA_id:025549 AJ289985 FukuN111 prokMSA_id:096609 AJ575730 Verrucomicrobia clone SW59 2.10.2.014 OTU 1 seq prokMSA_id:030619 AF446291 Verrucomicrobia FL13A03 2.10.2.015 OTU 2 seqs prokMSA_id:030638 AB041325 ECS55 prokMSA_id:050092 AB041326 ECS56 2.10.2.016 OTU 1 seq prokMSA_id:033333 AF424504 Verrucomicrobia MERTZ_2CM_57 2.10.2.017 OTU 1 seq prokMSA_id:035006 AF211304 CE99 2.10.2.018 OTU 1 seq prokMSA_id:039216 AJ252689 Rhizosphere soil clone RSC-II-64 2.10.2.019 OTU 3 seqs prokMSA_id:041135 AB073978 Fucophilus fucoidanolyticus prokMSA_id:092807 AY354863 Verrucomicrobia clone PLY-P3-63 prokMSA_id:092295 AY354864 Verrucomicrobia clone PLY-P3-87 2.10.2.020 OTU 1 seq prokMSA_id:041785 AB022607 Verrucomicrobia SA14 2.10.2.023 OTU 1 seq prokMSA_id:062657 AF507905 clone ML623J-55 2.10.2.024 OTU 1 seq prokMSA_id:063314 AF523903 clone RCP2-6 2.10.2.025 OTU 1 seq prokMSA_id:074031 AJ240909 CHAB-II-49 5' 2.10.2.026 OTU 1 seq prokMSA_id:077840 AB089121 Verrucomicrobia clone:Rs-D37 2.10.2.027 OTU 1 seq prokMSA_id:089611 AY245482 ML21_DBB2 2.10.2.028 OTU 1 seq prokMSA_id:091973 AY344428 clone K2-S-20 2.10.2.029 OTU 1 seq prokMSA_id:093436 AY360507 clone BSB3-217m 2.10.2.031 OTU 13 seqs prokMSA_id:024917 AF316721 Crater Lake CL120-23 prokMSA_id:027072 AF316722 Crater Lake CL120-26 prokMSA_id:029408 AF316723 Crater Lake CL120-31 prokMSA_id:025893 AF316724 Crater Lake CL120-60 prokMSA_id:043059 AF316725 Crater Lake CL120-118 prokMSA_id:053002 AF316726 Crater Lake CL120-124 prokMSA_id:042609 AF316727 Crater Lake CL120-135 prokMSA_id:060779 AF491676 Verrucomicrobiales clone SFD1-8 prokMSA_id:096571 AJ575735 Verrucomicrobia clone NE37 prokMSA_id:095381 AJ575736 Verrucomicrobia clone NE53 prokMSA_id:096658 AJ575737 Verrucomicrobia clone NE54 prokMSA_id:095864 AJ575738 Verrucomicrobia clone NE55 prokMSA_id:060876 AY135897 clone SG2-11 2.10.2.999 poor quality 50 seqs prokMSA_id:064052 AB087315 clone:CF44 prokMSA_id:089969 AB111847 prokMSA_id:001560 AF010049 unnamed organism. prokMSA_id:001564 AF030798 clone Adriatic31. prokMSA_id:001557 AF107530 clone SY4-21. prokMSA_id:031202 AF141387 Verrucomicrobiales clone CR-FL1 prokMSA_id:034367 AF141406 Verrucomicrobiales clone CR-FL25 prokMSA_id:032013 AF141408 Verrucomicrobiales clone CR-FL27 prokMSA_id:039178 AF141455 Planctomycetaceae clone CRE-FL31 prokMSA_id:038097 AF234133 #0319-6L10 prokMSA_id:025954 AF273320 IAFESA6 prokMSA_id:046387 AF316714 Crater Lake CL0-14 prokMSA_id:039302 AF316715 Crater Lake CL0-25 prokMSA_id:051699 AF316716 Crater Lake CL0-63 prokMSA_id:033491 AF316717 Crater Lake CL0-71 prokMSA_id:028535 AF316718 Crater Lake CL0-112 prokMSA_id:025311 AF316719 Crater Lake CL0-115 prokMSA_id:040087 AF316728 Crater Lake CL500-5 prokMSA_id:040945 AF358000 clone LO12.9 prokMSA_id:044132 AF388352 clone Ac90 prokMSA_id:018491 AF390942 clone ICBTG4 prokMSA_id:048638 AF392746 clone CDH1 prokMSA_id:035962 AF392747 clone CDB1 prokMSA_id:018412 AF392748 clone CEC2 prokMSA_id:026420 AF428651 clone CRD99-73 prokMSA_id:052079 AF428668 clone CRP99-14 prokMSA_id:021528 AF429190 clone CR99-2-04 prokMSA_id:075893 AF431580 Verrucomicrobia clone N12.17WL prokMSA_id:076930 AF431582 Verrucomicrobia clone N12.30WL prokMSA_id:075753 AF432765 clone N41.133PG prokMSA_id:046337 AF441971 clone CD12A5 prokMSA_id:001555 AJ011152 clone 4-14. prokMSA_id:041965 AJ296628 GR-WP39-22 clone GR-WP39-22 prokMSA_id:019364 AJ308285 clone F99_24 prokMSA_id:092102 AJ506747 population variant HSP prokMSA_id:093087 AJ506748 population variant EP1P prokMSA_id:059986 AJ507507 Verrucomicrobium sp. clone VE43-99 prokMSA_id:059983 AJ507510 Verrucomicrobium sp. clone VE51-98 prokMSA_id:057328 AJ518108 clone Mul01-12 prokMSA_id:081986 AJ550448 clone AS 34 prokMSA_id:081606 AJ550449 clone AS 37 prokMSA_id:093847 AJ582593 clone M50-07 prokMSA_id:035358 AY038452 clone CD3E7 prokMSA_id:076999 AY157134 Verrucomicrobium sp. isolate PG-37 prokMSA_id:080697 AY192325 Verrucomicrobia clone P3-4D prokMSA_id:091126 AY337041 Verrucomicrobiales clone 5b-RIV prokMSA_id:093703 AY364044 clone cRI23c prokMSA_id:001567 D26194 soil from paddy field clone PAD7. prokMSA_id:001568 X84572 str. SBR2033. prokMSA_id:001569 Z69322 str. s18. 2.10.3 ENVIRONMENTAL_CLONE_OPB35_SUBGROUP 120 seqs 2.10.3.001 OTU 1 seq prokMSA_id:001587 U62837 clone RB14. 2.10.3.003 OTU 1 seq prokMSA_id:001585 U62825 clone RB01. 2.10.3.005 OTU 16 seqs prokMSA_id:050325 AF465651 Verrucomicrobia YNPRH34A prokMSA_id:018733 AJ132483 Verrucomicrobia EV105 prokMSA_id:043928 AJ132486 Verrucomicrobia EV155 prokMSA_id:017794 AJ132487 Verrucomicrobia EV108 prokMSA_id:034027 AJ132488 Verrucomicrobia EV109 prokMSA_id:017619 AJ132489 Verrucomicrobia EV110 prokMSA_id:021951 AJ132493 Verrucomicrobia EV117 prokMSA_id:020229 AJ132495 Verrucomicrobia EV133 prokMSA_id:032335 AJ132497 Verrucomicrobia EV139 prokMSA_id:045438 AJ132498 Verrucomicrobia EV151 prokMSA_id:052424 AJ132499 Verrucomicrobia EV152 prokMSA_id:038603 AJ132500 Verrucomicrobia EV153 prokMSA_id:034951 AJ132501 Verrucomicrobia EV154 prokMSA_id:001586 U62826 clone RB02. prokMSA_id:001574 U62845 clone RB24. prokMSA_id:001575 U62850 clone RB31. 2.10.3.006 OTU 1 seq prokMSA_id:001573 U62843 clone RB22. 2.10.3.007 OTU 1 seq prokMSA_id:001572 AF027005 clone OPB35. 2.10.3.008 OTU 1 seq prokMSA_id:016560 AF328220 clone KS87 2.10.3.009 OTU 1 seq prokMSA_id:017035 AF234711 sludge H2 2.10.3.010 OTU 1 seq prokMSA_id:018343 AF234086 #0319-7B2 2.10.3.011 OTU 1 seq prokMSA_id:019720 AF316729 Crater Lake CL120-84 2.10.3.012 OTU 1 seq prokMSA_id:020033 AJ401111 verrucomicrobium DEV070 clone DEV070 2.10.3.013 OTU 1 seq prokMSA_id:020065 AJ252700 Rhizosphere soil clone RSC-II-86 2.10.3.014 OTU 1 seq prokMSA_id:021798 AJ401114 verrucomicrobium DEV059 clone DEV059 2.10.3.015 OTU 1 seq prokMSA_id:024920 AJ132490 Verrucomicrobia EV111 2.10.3.016 OTU 4 seqs prokMSA_id:054478 AJ132480 Verrucomicrobia EV102 prokMSA_id:041724 AJ132482 Verrucomicrobia EV104 prokMSA_id:027540 AJ132484 Verrucomicrobia EV106 prokMSA_id:026596 AJ132496 Verrucomicrobia EV134 2.10.3.017 OTU 1 seq prokMSA_id:027626 AJ252677 Rhizosphere soil clone RSC-II-18 2.10.3.018 OTU 1 seq prokMSA_id:028520 AF316730 Crater Lake CL120-133 2.10.3.019 OTU 1 seq prokMSA_id:031253 AJ401128 verrucomicrobium DEV020 clone DEV020 2.10.3.020 OTU 1 seq prokMSA_id:031747 AJ401115 verrucomicrobium DEV008 clone DEV008 2.10.3.021 OTU 1 seq prokMSA_id:035236 AJ132485 Verrucomicrobia EV107 2.10.3.022 OTU 1 seq prokMSA_id:037435 AJ252653 Agricultural soil clone SC-I-74 2.10.3.023 OTU 1 seq prokMSA_id:050109 AF445718 Verrucomicrobia clone SM2C09 2.10.3.024 OTU 1 seq prokMSA_id:052814 AJ401132 verrucomicrobium DEV114 clone DEV114 2.10.3.025 OTU 1 seq prokMSA_id:060845 AY135930 clone SG2-142 2.10.3.026 OTU 1 seq prokMSA_id:063231 AF523996 clone FW49 2.10.3.027 OTU 1 seq prokMSA_id:063232 AF523995 clone FW4 2.10.3.028 OTU 1 seq prokMSA_id:072827 AF351215 Verrucomicrobia clone 12-30 2.10.3.029 OTU 1 seq prokMSA_id:073047 AJ132481 Verrucomicrobia EV103 2.10.3.030 OTU 1 seq prokMSA_id:081873 AY211073 Verrucomicrobia clone VC12 2.10.3.031 OTU 1 seq prokMSA_id:082263 AY218640 clone KD4-60 2.10.3.032 OTU 1 seq prokMSA_id:083901 AY217508 Verrucomicrobia 2.10.3.033 OTU 1 seq prokMSA_id:085198 AJ555197 Actinobacteridae clone ACF4 2.10.3.034 OTU 1 seq prokMSA_id:092890 AY352447 Verrucomicrobia clone AVC2 2.10.3.999 poor quality 70 seqs prokMSA_id:001576 AB005849 clone FPR1. prokMSA_id:024931 AB041323 ECS53 prokMSA_id:076565 AB075053 clone:KCS10 prokMSA_id:001581 AF010107 unnamed organism. prokMSA_id:041042 AF016758 soil clone S-48 prokMSA_id:038860 AF107522 SY3-64 prokMSA_id:073422 AF107531 SY4-22 prokMSA_id:001579 AF128719 clone C030. prokMSA_id:001578 AF145813 clone K20-10. prokMSA_id:018471 AF388313 clone Ac49 prokMSA_id:052448 AF388322 clone Ac64 prokMSA_id:035089 AF428604 clone CRD99-26 prokMSA_id:017408 AF428667 clone CRP99-13 prokMSA_id:032488 AF428990 clone CR99-35-32 prokMSA_id:019922 AF429032 clone CR99-35-74 prokMSA_id:019532 AF429055 clone CR99-7-21 prokMSA_id:049129 AF429081 clone CR99-7-47 prokMSA_id:044822 AF429093 clone CR99-7-59 prokMSA_id:049184 AF429189 clone CR99-2-03 prokMSA_id:074876 AF431585 Verrucomicrobia clone S21.06WL prokMSA_id:075946 AF431594 Verrucomicrobia clone C31.48SM prokMSA_id:077225 AF431600 Verrucomicrobia clone N42.61PG prokMSA_id:065849 AF507479 soil clone S051 prokMSA_id:065778 AF507596 soil clone C150 prokMSA_id:065751 AF507627 soil clone C1132 prokMSA_id:065716 AF507666 soil clone C1151 prokMSA_id:065655 AF507733 soil clone S158 prokMSA_id:017031 AJ318763 soil clone FHM1034 prokMSA_id:020485 AJ318766 soil clone FHM2012 prokMSA_id:026849 AJ318773 soil clone FHM328 prokMSA_id:027636 AJ318774 soil clone FHM1161 prokMSA_id:030852 AJ431300 Chlamydiales/Verrucomicrobia group clone 1_29a prokMSA_id:050039 AJ437427 clone 1_34_305 prokMSA_id:057298 AJ518176 clone Mul1P2-8 prokMSA_id:057280 AJ518200 clone Mul2P1-43 prokMSA_id:057247 AJ518249 clone Mul2P2-53 prokMSA_id:057243 AJ518253 clone Mul2P2-64 prokMSA_id:057237 AJ518264 clone Mul2P2-82 prokMSA_id:057229 AJ518267 clone Mul2P2-9 prokMSA_id:057213 AJ518291 clone Mul2P3-6 prokMSA_id:057205 AJ518298 clone Mul2P3-76 prokMSA_id:057206 AJ518299 clone Mul2P3-77 prokMSA_id:056074 AJ518305 clone Mul2P3-87 prokMSA_id:057130 AJ518405 clone Neu4P2-49 prokMSA_id:057101 AJ518434 clone Neu4P3-40 prokMSA_id:057043 AJ518504 clone Qui2P2-26 prokMSA_id:057040 AJ518507 clone Qui2P2-40 prokMSA_id:056913 AJ518678 clone Sai4P1-45 prokMSA_id:055636 AJ518693 clone Sai4P1-75 prokMSA_id:056868 AJ518735 clone Sai4P3-59 prokMSA_id:068812 AY037576 soil clone S041 prokMSA_id:033088 AY037701 earthworm cast clone C050 prokMSA_id:079830 AY192345 Verrucomicrobia clone S2-9A prokMSA_id:080640 AY192350 Verrucomicrobia clone S3-1H prokMSA_id:084668 AY214621 Verrucomicrobia clone SL2-1-F2 prokMSA_id:084704 AY214735 Verrucomicrobia clone BB-1-H4 prokMSA_id:098075 AY395097 clone B01R prokMSA_id:097837 AY395171 clone G05K prokMSA_id:095708 AY395173 clone G33K prokMSA_id:096851 AY395198 clone Kolm16 prokMSA_id:095624 AY395205 clone L16K prokMSA_id:096272 AY395207 Verrucomicrobia clone M02K prokMSA_id:095363 AY395213 clone N13K prokMSA_id:001570 D26205 soil from paddy field clone PAD18. prokMSA_id:001571 D26237 soil from paddy field clone PAD50. prokMSA_id:001580 U68592 clone M5. prokMSA_id:001583 U68685 clone P67. prokMSA_id:001584 U68687 clone P71. prokMSA_id:001582 U81723 clone vadinHA48. prokMSA_id:001577 U85172 clone ACK-DH1. 2.10.4 PRSB.DEJONGEII_SUBGROUP 119 seqs 2.10.4.001 OTU 1 seq prokMSA_id:001602 Z94005 clone T62. 2.10.4.002 OTU 1 seq prokMSA_id:001601 AF142791 clone ACE-12. 2.10.4.005 OTU 8 seqs prokMSA_id:001600 AF142801 clone ACE-25. prokMSA_id:001599 AF142812 clone ACE-37. prokMSA_id:035291 AJ401107 verrucomicrobium DEV007 clone DEV007 prokMSA_id:040791 AJ401117 verrucomicrobium DEV019 clone DEV019 prokMSA_id:038408 AJ401118 verrucomicrobium DEV022 clone DEV022 prokMSA_id:025719 AJ401133 verrucomicrobium DEV021 clone DEV021 prokMSA_id:045741 AY028220 Verrucomicrobia Arctic95D-9 prokMSA_id:078053 AY171334 clone s3 2.10.4.006 OTU 1 seq prokMSA_id:001598 AF142847 clone BURTON-29. 2.10.4.007 OTU 1 seq prokMSA_id:001597 AF159643 clone HstpL71. 2.10.4.008 OTU 1 seq prokMSA_id:001596 X90515 Verrucomicrobium spinosum str. 145 DSM 4136 . 2.10.4.009 OTU 1 seq prokMSA_id:001594 AF159644 clone HstpL102. 2.10.4.010 OTU 4 seqs prokMSA_id:022941 AJ290012 FukuS27 prokMSA_id:001588 U60012 Prosthecobacter dejongeii str. FC1 ATCC 27091 . prokMSA_id:001593 U60013 Prosthecobacter vanneervenii str. FC2 ATCC 70019 . prokMSA_id:001592 U60015 Prosthecobacter fusiformis str. FC4 DSM 8960 . 2.10.4.011 OTU 2 seqs prokMSA_id:017307 AJ401106 verrucomicrobium DEV006 clone DEV006 prokMSA_id:019930 AJ401130 verrucomicrobium DEV179 clone DEV179 2.10.4.012 OTU 4 seqs prokMSA_id:024442 AJ315481 isolate HuCC13 prokMSA_id:017463 AJ400240 clone S30-1 prokMSA_id:018109 AJ400275 clone L10-6 prokMSA_id:031006 AJ408970 clone HuCA18 2.10.4.013 OTU 2 seqs prokMSA_id:023971 AF234714 sludge A38 prokMSA_id:035008 AF234742 sludge A21 2.10.4.014 OTU 4 seqs prokMSA_id:024975 AB077355 Verrucomicrobia clone:TYM--18 prokMSA_id:043995 AF424511 Verrucomicrobia MERTZ_0CM_111 prokMSA_id:046082 AY028221 Verrucomicrobia Arctic96BD-2 prokMSA_id:056383 AY133438 clone BB2_68 2.10.4.015 OTU 1 seq prokMSA_id:026283 AJ401131 verrucomicrobium DEV064 clone DEV064 2.10.4.016 OTU 1 seq prokMSA_id:055975 AJ441222 Verrucomicrobia clone P. palm C 85 2.10.4.017 OTU 4 seqs prokMSA_id:035703 AF211287 Verrucomicrobia CE59 prokMSA_id:047433 AF316731 Crater Lake CL500-85 prokMSA_id:034054 AF348723 Verrucomicrobium sp. clone MPD-49 prokMSA_id:053214 AJ401105 verrucomicrobium DEV005 clone DEV005 2.10.4.018 OTU 1 seq prokMSA_id:034403 AF418948 clone HTBB2 2.10.4.019 OTU 1 seq prokMSA_id:035295 AJ401127 verrucomicrobium DEV010 clone DEV010 2.10.4.020 OTU 1 seq prokMSA_id:036316 AF424513 Verrucomicrobia MERTZ_0CM_339 2.10.4.021 OTU 1 seq prokMSA_id:043412 AJ252626 Agricultural soil clone SC-I-26 2.10.4.022 OTU 1 seq prokMSA_id:043721 AF424505 Verrucomicrobia MERTZ_2CM_134 2.10.4.023 OTU 1 seq prokMSA_id:045457 AJ401129 verrucomicrobium DEV132 clone DEV132 2.10.4.024 OTU 1 seq prokMSA_id:046565 AB060932 clone:B9 2.10.4.025 OTU 1 seq prokMSA_id:046876 AJ318188 clone BItii14 2.10.4.028 OTU 5 seqs prokMSA_id:053058 AF424512 Verrucomicrobia MERTZ_0CM_215 prokMSA_id:057461 AJ441223 Verrucomicrobia clone P. palm C/A 139 prokMSA_id:057441 AJ441243 Verrucomicrobia clone P. palm A 54 prokMSA_id:059753 AY133443 clone OB3_171 prokMSA_id:092875 AY354865 Verrucomicrobia clone PLY-P3-95 2.10.4.029 OTU 2 seqs prokMSA_id:059757 AY133441 clone OB3_76 prokMSA_id:059756 AY133442 clone OB3_46 2.10.4.030 OTU 1 seq prokMSA_id:059758 AY133440 clone OB3_174 2.10.4.031 OTU 1 seq prokMSA_id:059759 AY133436 clone BB2_180 2.10.4.032 OTU 1 seq prokMSA_id:062479 AF513965 Verrucomicrobia clone LA1-B30N 2.10.4.033 OTU 1 seq prokMSA_id:079313 AB099995 sequences clone: IndB1-5 2.10.4.034 OTU 2 seqs prokMSA_id:079805 AY193151 Verrucomicrobia clone BTM64 prokMSA_id:079963 AY193155 Verrucomicrobia clone BTM48 2.10.4.035 OTU 1 seq prokMSA_id:091270 AY344427 clone K2-30-31 2.10.4.036 OTU 1 seq prokMSA_id:091490 AY135670 clone ANT18/2_7 2.10.4.037 OTU 1 seq prokMSA_id:091546 AY345492 clone W4-B59 2.10.4.999 poor quality 59 seqs prokMSA_id:001589 AF078288 unnamed organism. prokMSA_id:054197 AF141508 Verrucomicrobiales clone CRE-PA23 prokMSA_id:043246 AF141513 Verrucomicrobiales clone CRE-PA29 prokMSA_id:053429 AF268306 Verrucomicrobiales ESR 22 prokMSA_id:032246 AF268307 Verrucomicrobiales ESR 23 prokMSA_id:025292 AF268308 Verrucomicrobiales ESR 24 prokMSA_id:025017 AF268309 Verrucomicrobiales ESR 25 prokMSA_id:030206 AF277502 SIC.812 prokMSA_id:050456 AF277509 SIC.816 prokMSA_id:018170 AF277533 SIC.10401 prokMSA_id:050450 AF314440 PHOS-HE48 prokMSA_id:017001 AF314441 PHOS-HD11 prokMSA_id:045214 AF314442 PHOS-HD03 prokMSA_id:019268 AF320953 Lake Michigan sediment LMBA37 prokMSA_id:031113 AF320954 Lake Michigan sediment LMBA37 prokMSA_id:028790 AF388338 clone Ac70 prokMSA_id:031680 AF428709 clone CRP99-55 prokMSA_id:027122 AF428798 clone CR98-5-68 prokMSA_id:025271 AF428931 clone CR98-35-49 prokMSA_id:045667 AF429221 clone CR99-2-35 prokMSA_id:075319 AF432824 clone N41.07PG prokMSA_id:070985 AF523317 clone P4-7 prokMSA_id:061095 AF530293 clone cadhufec005h7 prokMSA_id:023382 AH010351 Lake Michigan sediment LMBA37 and genes prokMSA_id:036367 AJ287647 verrucomicrobium 159ev prokMSA_id:048513 AJ311412 maize rhizosphere c14_45 prokMSA_id:040027 AJ401124 verrucomicrobium DEV173 clone DEV173 prokMSA_id:019413 AJ401125 verrucomicrobium DEV120 clone DEV120 prokMSA_id:020101 AJ401126 verrucomicrobium DEV015 clone DEV015 prokMSA_id:017128 AJ401134 verrucomicrobium DEV278 clone DEV278 prokMSA_id:028160 AJ431295 Chlamydiales/Verrucomicrobia group clone 1_41 prokMSA_id:059990 AJ507498 Verrucomicrobium sp. clone VE14-98 prokMSA_id:059993 AJ507501 Verrucomicrobium sp. clone VE25-98 prokMSA_id:059988 AJ507504 Verrucomicrobium sp. clone VE34-98 prokMSA_id:059987 AJ507505 Verrucomicrobium sp. clone VE37-98 prokMSA_id:059981 AJ507511 Verrucomicrobium sp. clone VE52-98 prokMSA_id:059979 AJ507513 Verrucomicrobium sp. clone VE95-99 prokMSA_id:057059 AJ518488 clone Qui2P1-62 prokMSA_id:057039 AJ518510 clone Qui2P2-52 prokMSA_id:081104 AJ550442 clone AS 5 prokMSA_id:082240 AJ550446 clone AS 78 prokMSA_id:082294 AJ550447 clone AS 83 prokMSA_id:093938 AJ582568 clone G1 prokMSA_id:093855 AJ582598 clone M80-08 prokMSA_id:017426 AY038743 Verrucomicrobia clone TAF-B46 prokMSA_id:022984 AY048895 L11-5hw10 prokMSA_id:059755 AY133437 clone OB3_54 prokMSA_id:059754 AY133439 clone BB2_80 prokMSA_id:056623 AY143745 Verrucomicrobium sp. clone V97 prokMSA_id:075908 AY157106 Verrucomicrobium sp. isolate HS-82 prokMSA_id:084613 AY214768 Verrucomicrobia clone BB-1-D6 prokMSA_id:082378 AY216723 soil clone 22 prokMSA_id:082245 AY216730 soil clone 29 prokMSA_id:087691 AY261419 clone RFLP U98 prokMSA_id:093365 AY361925 clone P8-GEN-13 prokMSA_id:096800 AY395098 clone B03R prokMSA_id:001591 U60014 Prosthecobacter debontii str. FC3 ATCC 70020 . prokMSA_id:001595 X59721 Verrucomicrobium spinosum str. 145 IFAM 1439 . prokMSA_id:001590 X84486 unnamed organism. 2.10.5 ENVIRONMENTAL_CLONE_WCHD3-88 29 seqs 2.10.5.001 OTU 2 seqs prokMSA_id:040683 AB060931 B2 prokMSA_id:001603 AF050561 clone WCHD3-88. 2.10.5.002 OTU 3 seqs prokMSA_id:043374 AF217460 Candidatus Xiphinematobacter americani prokMSA_id:037483 AF217461 Candidatus Xiphinematobacter rivesi prokMSA_id:029275 AF217462 Candidatus Xiphinematobacter brevicolli 2.10.5.003 OTU 1 seq prokMSA_id:030869 AF418960 clone HTG11 2.10.5.004 OTU 4 seqs prokMSA_id:073340 AJ289983 FukuN106 prokMSA_id:045580 AJ289992 FukuN18 prokMSA_id:097376 AJ575731 Verrucomicrobia clone NE06 prokMSA_id:098752 AJ575732 Verrucomicrobia clone NE09 2.10.5.005 OTU 1 seq prokMSA_id:065652 AF507739 soil clone S171 2.10.5.006 OTU 1 seq prokMSA_id:092595 AY343218 clone REC6M_67 2.10.5.999 poor quality 17 seqs prokMSA_id:040256 AB060936 cyanobacterium clone:B3 prokMSA_id:058702 AB080885 human intestinal clone:JW1G4 prokMSA_id:021807 AF078286 Grassland soil clone saf3_020 prokMSA_id:037625 AF107499 SY1-18 prokMSA_id:054933 AF141391 Verrucomicrobiales clone CR-FL5 prokMSA_id:045875 AF268860 glc17 prokMSA_id:034322 AF268866 glc23 prokMSA_id:048139 AF428656 clone CRP99-02 prokMSA_id:026071 AF428884 clone CR98-35-02 prokMSA_id:033051 AF429163 clone CR99-24-53 prokMSA_id:029148 AF429171 clone CR99-24-61 prokMSA_id:028723 AJ290079 FukuN43 prokMSA_id:069040 AJ301572 GR-296.II.4A prokMSA_id:093113 AY343190 clone REC6M_34 prokMSA_id:093098 AY343217 clone REC6M_25 prokMSA_id:092128 AY343219 clone REC6M_74 prokMSA_id:092995 AY343220 clone REC6M_61 2.10.6 ENVIRONMENTAL_CLONE_DA101_SUBGROUP 198 seqs 2.10.6.004 OTU 1 seq prokMSA_id:001625 AF013538 unnamed organism. 2.10.6.005 OTU 1 seq prokMSA_id:001623 AF009975 clone LD29. 2.10.6.006 OTU 1 seq prokMSA_id:001622 AF009974 clone LD19. 2.10.6.007 OTU 1 seq prokMSA_id:001608 AF013543 unnamed organism. 2.10.6.008 OTU 1 seq prokMSA_id:001607 AF013520 unnamed organism. 2.10.6.011 OTU 1 seq prokMSA_id:028009 AJ401104 verrucomicrobium DEV003 clone DEV003 2.10.6.012 OTU 1 seq prokMSA_id:033436 AB064683 clone:NK205 2.10.6.013 OTU 1 seq prokMSA_id:033602 AJ132492 Verrucomicrobia EV116 2.10.6.014 OTU 4 seqs prokMSA_id:052421 AJ401108 verrucomicrobium DEV009 clone DEV009 prokMSA_id:035991 AJ401109 verrucomicrobium DEV147 clone DEV147 prokMSA_id:047080 AJ401112 verrucomicrobium DEV145 clone DEV145 prokMSA_id:048886 AJ401116 verrucomicrobium DEV035 clone DEV035 2.10.6.015 OTU 1 seq prokMSA_id:043879 AF403191 clone cvf122212 2.10.6.016 OTU 3 seqs prokMSA_id:051214 AF145811 Metal-contaminated soil clone K20-07 prokMSA_id:044313 AF145828 Metal-contaminated soil clone K20-28 prokMSA_id:061321 AY043933 Verrucomicrobia clone NMS8.47WL 2.10.6.018 OTU 19 seqs prokMSA_id:001605 AF013522 clone C019. prokMSA_id:022528 AF271313 planctomycete clone15 prokMSA_id:051725 AF271320 planctomycete clone25 prokMSA_id:043074 AF445088 clone Tc4 prokMSA_id:042892 AF445095 clone Tc25 prokMSA_id:051912 AF445128 clone Tc68 prokMSA_id:032443 AF445157 clone Tc100 prokMSA_id:073541 AJ132479 Verrucomicrobia EV101 prokMSA_id:039109 AJ132494 Verrucomicrobia EV118 prokMSA_id:046832 AJ244309 Riz6E2 prokMSA_id:084570 AJ555220 actinomycete clone AOF12 prokMSA_id:080212 AY192338 Verrucomicrobia clone P3-1H prokMSA_id:079840 AY192344 Verrucomicrobia clone S2-7D prokMSA_id:080985 AY192351 Verrucomicrobia clone S3-2E prokMSA_id:082499 AY214649 Verrucomicrobia clone SL2-1-C2 prokMSA_id:082424 AY218772 clone KD6-84 prokMSA_id:001633 U51864 grassland soil sample approx. 15 mi. N of Pullman WA clone EA25. prokMSA_id:001631 U62853 clone RB35. prokMSA_id:001624 Y07576 clone DA101. 2.10.6.019 OTU 1 seq prokMSA_id:056563 AF507730 soil clone S154 2.10.6.020 OTU 1 seq prokMSA_id:060575 AF407726 clone B66 2.10.6.021 OTU 1 seq prokMSA_id:065621 AF507780 soil clone S1203 2.10.6.022 OTU 1 seq prokMSA_id:065627 AF507774 soil clone S1182 2.10.6.023 OTU 1 seq prokMSA_id:065639 AF507755 soil clone S1124 2.10.6.024 OTU 1 seq prokMSA_id:065645 AF507749 soil clone S1103 2.10.6.025 OTU 1 seq prokMSA_id:065712 AF507668 soil clone C1172 2.10.6.026 OTU 1 seq prokMSA_id:065744 AF507636 soil clone C1100 2.10.6.027 OTU 1 seq prokMSA_id:065874 AF507453 soil clone C037 2.10.6.028 OTU 1 seq prokMSA_id:065927 AF507390 soil clone C0154 2.10.6.029 OTU 1 seq prokMSA_id:078274 AB089122 Verrucomicrobia clone:Rs-P07 2.10.6.030 OTU 1 seq prokMSA_id:079702 AY192334 Verrucomicrobia clone W3-1G 2.10.6.031 OTU 1 seq prokMSA_id:082557 AJ555218 actinomycete clone AOF9 2.10.6.032 OTU 1 seq prokMSA_id:088493 AJ577299 clone 90 2.10.6.033 OTU 1 seq prokMSA_id:088547 AJ577297 clone 52 2.10.6.034 OTU 1 seq prokMSA_id:088590 AJ577302 clone 4 2.10.6.035 OTU 1 seq prokMSA_id:089920 AJ577296 clone 37 2.10.6.038 OTU 4 seqs prokMSA_id:098770 AJ575733 Verrucomicrobia clone NE10 prokMSA_id:096795 AJ575734 Verrucomicrobia clone NE12 prokMSA_id:097715 AJ575739 Verrucomicrobia clone NE80 prokMSA_id:098363 AJ575740 Verrucomicrobia clone NE82 2.10.6.999 poor quality 142 seqs prokMSA_id:024775 AB064675 clone:NK193 prokMSA_id:029876 AB064702 clone:NK230 prokMSA_id:075922 AB075174 clone:TSS12 prokMSA_id:088749 AB111832 prokMSA_id:001606 AF007595 clone sh66. prokMSA_id:001609 AF010030 unnamed organism. prokMSA_id:030388 AF010071 prokMSA_id:001621 AF010081 unnamed organism. prokMSA_id:037553 AF078263 Grassland soil clone saf2_415 prokMSA_id:026742 AF078315 Grassland soil clone saf3_223 prokMSA_id:031625 AF078324 Grassland soil clone sl1_018 prokMSA_id:026910 AF093602 Freshwater sediment clone ppE25dna prokMSA_id:030666 AF107329 freshwater LCK-41 prokMSA_id:001615 AF128671 clone S0106. prokMSA_id:001614 AF128682 clone S038. prokMSA_id:018984 AF128700 soil S0155 prokMSA_id:001613 AF128714 clone C0155. prokMSA_id:001612 AF128741 clone C0103. prokMSA_id:001611 AF128742 clone C0104. prokMSA_id:050576 AF141475 Planctomycetaceae clone CRE-FL59 prokMSA_id:028665 AF337820 copper smeltery D83 prokMSA_id:032967 AF337825 copper smeltery D56 prokMSA_id:040397 AF337858 copper smeltery D108 prokMSA_id:035466 AF388320 clone Ac67 prokMSA_id:052778 AF388362 clone Ac57 prokMSA_id:029608 AF423225 soil clone 1404-2 prokMSA_id:076198 AF431584 Verrucomicrobia clone C17.21WL prokMSA_id:076603 AF431587 Verrucomicrobia clone S21.54WL prokMSA_id:075067 AF431588 Verrucomicrobia clone S22.38WL prokMSA_id:075671 AF431589 Verrucomicrobia clone N26.104SM prokMSA_id:076826 AF431590 Verrucomicrobia clone N26.117SM prokMSA_id:076250 AF431591 Verrucomicrobia clone N27.44SM prokMSA_id:077240 AF431593 Verrucomicrobia clone C31.20SM prokMSA_id:076493 AF431595 Verrucomicrobia clone S36.31SM prokMSA_id:077001 AF431597 Verrucomicrobia clone N41.100PG prokMSA_id:075060 AF431598 Verrucomicrobia clone N42.36PG prokMSA_id:076089 AF431601 Verrucomicrobia clone S51.19PG prokMSA_id:066645 AF432252 Ellin428 prokMSA_id:076402 AF432731 clone S22.53WL prokMSA_id:075743 AF432736 clone N26.116SM prokMSA_id:076163 AF432745 clone C31.08SM prokMSA_id:075453 AF432762 clone N41.121PG prokMSA_id:035247 AF445112 clone Tc47 prokMSA_id:040296 AF445143 clone Tc84 prokMSA_id:065832 AF507498 soil clone S0114 prokMSA_id:065801 AF507532 soil clone S0141 prokMSA_id:065780 AF507593 soil clone C143 prokMSA_id:065763 AF507614 soil clone C192 prokMSA_id:065759 AF507619 soil clone C120 prokMSA_id:065667 AF507722 soil clone S130 prokMSA_id:056118 AF507770 soil clone S1161 prokMSA_id:001630 AJ244308 clone Riz6E. prokMSA_id:036959 AJ244352 Riz1076 prokMSA_id:072919 AJ286729 Verrucomicrobium sp. isolate DGGE bands E & e prokMSA_id:069283 AJ287652 verrucomicrobium 336ev prokMSA_id:021421 AJ308289 clone F99_27 prokMSA_id:046175 AJ318767 soil clone FHM1636 prokMSA_id:019095 AJ318768 soil clone FHM936 prokMSA_id:027337 AJ318770 soil clone FHM541 prokMSA_id:051963 AJ318771 soil clone FHM642 prokMSA_id:037458 AJ318777 soil clone FHM1430 prokMSA_id:061764 AJ416177 clone Sta4-51 prokMSA_id:064180 AJ488925 clone A8 prokMSA_id:057326 AJ518114 clone Mul01-19 prokMSA_id:057307 AJ518137 clone Mul01-78 prokMSA_id:057012 AJ518552 clone Qui4P1-79 prokMSA_id:056965 AJ518611 clone Qui4P2-86 prokMSA_id:081791 AJ550443 clone AS 91 prokMSA_id:081846 AJ550444 clone AS 92 prokMSA_id:082297 AJ550445 clone AS 20 prokMSA_id:088576 AJ577298 clone 58 prokMSA_id:061493 AY043724 Verrucomicrobia clone NOW2.119WL prokMSA_id:061494 AY043727 Verrucomicrobia clone NOS7.135WL prokMSA_id:061491 AY043728 Verrucomicrobia clone NOS7.170WL prokMSA_id:061490 AY043729 Verrucomicrobia clone NOS7.72WL prokMSA_id:061488 AY043730 Verrucomicrobia clone NOS7.78WL prokMSA_id:061333 AY043914 Verrucomicrobia clone NMW3.119WL prokMSA_id:061334 AY043915 Verrucomicrobia clone NMW3.140WL prokMSA_id:061331 AY043916 Verrucomicrobia clone NMW3.142WL prokMSA_id:056321 AY043917 Verrucomicrobia clone NMW3.145WL prokMSA_id:061332 AY043920 Verrucomicrobia clone NMW3.183WL prokMSA_id:061330 AY043921 Verrucomicrobia clone NMW3.206WL prokMSA_id:061328 AY043923 Verrucomicrobia clone NMW3.42WL prokMSA_id:061326 AY043924 Verrucomicrobia clone NMW3.58WL prokMSA_id:061329 AY043925 Verrucomicrobia clone NMW3.82WL prokMSA_id:061324 AY043928 Verrucomicrobia clone SMW4.33WL prokMSA_id:061322 AY043930 Verrucomicrobia clone SMW4.39WL prokMSA_id:061320 AY043931 Verrucomicrobia clone SMW4.44WL prokMSA_id:061318 AY043932 Verrucomicrobia clone SMW4.8WL prokMSA_id:061319 AY043934 Verrucomicrobia clone NMS8.58WL prokMSA_id:056017 AY043938 Verrucomicrobia clone SMS9.106WL prokMSA_id:056215 AY043940 Verrucomicrobia clone SMS9.113WL prokMSA_id:061310 AY043942 Verrucomicrobia clone SMS9.135WL prokMSA_id:061312 AY043943 Verrucomicrobia clone SMS9.22WL prokMSA_id:061313 AY043944 Verrucomicrobia clone SMS9.23WL prokMSA_id:061308 AY043946 Verrucomicrobia clone SMS9.56WL prokMSA_id:073321 AY143695 Verrucomicrobia clone Lu4 prokMSA_id:079572 AY186874 clone uvel38 prokMSA_id:080117 AY192328 Verrucomicrobia clone W1-2G prokMSA_id:080273 AY192330 Verrucomicrobia clone W1-3G prokMSA_id:079677 AY192331 Verrucomicrobia clone W1-3H prokMSA_id:080763 AY192332 Verrucomicrobia clone W2a-2A prokMSA_id:079970 AY192335 Verrucomicrobia clone W3-2F prokMSA_id:080848 AY192336 Verrucomicrobia clone W3-4B prokMSA_id:080064 AY192339 Verrucomicrobia clone P3-3D prokMSA_id:081000 AY192340 Verrucomicrobia clone P3-4F prokMSA_id:079757 AY192341 Verrucomicrobia clone S1a-8H prokMSA_id:080162 AY192342 Verrucomicrobia clone S1a-11D prokMSA_id:080293 AY192343 Verrucomicrobia clone S2-5D prokMSA_id:080108 AY192346 Verrucomicrobia clone S2-9H prokMSA_id:084606 AY214609 Verrucomicrobia clone SL2-1-G6 prokMSA_id:085446 AY214635 Verrucomicrobia clone SL2-1-D6 prokMSA_id:083634 AY214675 Verrucomicrobia clone SL2-2-G3R prokMSA_id:084796 AY214690 Verrucomicrobia clone SL2-2-G9R prokMSA_id:083798 AY214692 Verrucomicrobia clone SL2-2-B10F prokMSA_id:086123 AY214734 Verrucomicrobia clone BB-1-H5 prokMSA_id:086124 AY214795 Verrucomicrobia clone BB-2-H8 prokMSA_id:084648 AY214852 Verrucomicrobia clone BB-2-D12F prokMSA_id:082802 AY242815 soil clone TcA12 prokMSA_id:089622 AY289490 soil clone DS-155 prokMSA_id:093926 AY364047 clone cRI35c prokMSA_id:097689 AY391624 soil clone M8 prokMSA_id:096856 AY391639 soil clone M23 prokMSA_id:098532 AY391677 soil clone M61 prokMSA_id:096468 AY395166 clone F13ST prokMSA_id:095538 AY395189 clone J02K prokMSA_id:096602 AY395209 clone M05K prokMSA_id:096849 AY395211 clone N08K prokMSA_id:095429 AY395219 clone O13R prokMSA_id:001632 D26269 soil from soybean field clone FIE19. prokMSA_id:001629 U35595 clone 88R6. prokMSA_id:001616 U68595 clone M8. prokMSA_id:001627 U68610 clone M24. prokMSA_id:001617 U68631 clone M51. prokMSA_id:001618 U68636 clone M65. prokMSA_id:001604 U68652 clone P19. prokMSA_id:001619 U68666 clone P38. prokMSA_id:001620 U68671 clone P44. prokMSA_id:001628 U68683 clone P64. prokMSA_id:072685 U85169 clone ACK-DE41 prokMSA_id:001626 U85170 clone ACK-M6. prokMSA_id:001610 Z77406 unnamed organism. 2.11 ANR.THERMOTERRENUM_GROUP 115 seqs 2.11.001 OTU 6 seqs prokMSA_id:001653 AF027081 clone OPB46. prokMSA_id:001654 AF027082 clone OPB47. prokMSA_id:001655 AF027083 clone OPS44. prokMSA_id:001656 AF027084 clone OPS118. prokMSA_id:001657 AF027085 clone OPS139A. prokMSA_id:001659 AF027086 clone OPB72. 2.11.002 OTU 1 seq prokMSA_id:001658 AB011342 clone TUG14. 2.11.003 OTU 1 seq prokMSA_id:001651 AF073521 Aminobacterium mobilis str. ILE-3. 2.11.004 OTU 3 seqs prokMSA_id:001649 AF069287 Aminobacterium colombiense str. ALA-1. prokMSA_id:043285 AF295750 isolate RFLP 414 prokMSA_id:041156 AF408642 clone PCEDR467 2.11.007 OTU 12 seqs prokMSA_id:001642 AF125199 clone BH017. prokMSA_id:001643 AF125200 clone D084. prokMSA_id:001644 AF125201 clone D006. prokMSA_id:001645 AF125202 clone W028. prokMSA_id:001646 AF125203 clone W090. prokMSA_id:068348 AF481214 Firmicutes oral clone MCE7_5 E2 prokMSA_id:068345 AF481215 Firmicutes oral clone MCE3_120 E3 prokMSA_id:047490 AY005445 Flexistipes-like sp. oral clone BB062 prokMSA_id:071329 AY005447 Flexistipes-like sp. oral clone BH007 prokMSA_id:092848 AY349370 Deferribacteres sp. oral clone JV001 prokMSA_id:092528 AY349371 Deferribacteres sp. oral clone JV006 prokMSA_id:092501 AY349372 Deferribacteres sp. oral clone JV023 2.11.008 OTU 1 seq prokMSA_id:001641 AF129869 clone BB48. 2.11.010 OTU 4 seqs prokMSA_id:018399 AF280863 mle1-42 prokMSA_id:070446 AJ249260 DCE29 prokMSA_id:081485 AY217431 MTCE-T2 11H prokMSA_id:001637 U81706 clone vadinCA02. 2.11.011 OTU 1 seq prokMSA_id:001636 U81658 clone vadinBB02. 2.11.012 OTU 6 seqs prokMSA_id:021682 AF220305 o18g5 prokMSA_id:071455 AF234542 Dethiosulfovibrio marinus strain sr12 DSM 12538 prokMSA_id:070882 AF234543 Dethiosulfovibrio russensis strain sr13 DSM 12577 prokMSA_id:072998 AF234544 Dethiosulfovibrio russensis strain WS 100 DSM 12537 prokMSA_id:072749 AY005466 Dethiosulfovibrio acidaminovorans prokMSA_id:001635 U52817 Desulfothiovibrio peptidovorans str. G4207. 2.11.013 OTU 2 seqs prokMSA_id:042039 AJ243189 Anaerobaculum mobile strain NGA prokMSA_id:001634 U50711 Anaerobaculum thermoterrenum str. RWcit ACM 5076 . 2.11.014 OTU 1 seq prokMSA_id:016772 AF323759 clone BA017 complete 2.11.015 OTU 2 seqs prokMSA_id:071796 AF280820 tbr1-2 prokMSA_id:018164 AF280829 tbr4-7 2.11.017 OTU 2 seqs prokMSA_id:048692 AF323762 clone BA029 complete prokMSA_id:020062 AF323769 clone BA141 complete 2.11.018 OTU 3 seqs prokMSA_id:030163 AY005444 Flexistipes-like sp. oral clone BA121 prokMSA_id:086619 AY207056 Synergistes sp. P4G_18 P1 prokMSA_id:087292 AY278615 Synergistes genomosp. C1 2.11.019 OTU 1 seq prokMSA_id:036934 AF447148 clone TDC-S1:29 2.11.021 OTU 3 seqs prokMSA_id:019846 AB062819 clone:BCf4-02 prokMSA_id:038526 AB062836 clone:BCf7-04 prokMSA_id:078385 AB089066 low G+C Gram-positive clone:Rs-C88 2.11.022 OTU 1 seq prokMSA_id:044819 AF323770 clone BA128 complete 2.11.023 OTU 1 seq prokMSA_id:045552 AF424469 planctomycete MERTZ_2CM_287 2.11.024 OTU 1 seq prokMSA_id:049883 AF371930 clone p-4292-4Wa3 2.11.025 OTU 2 seqs prokMSA_id:066918 AJ306782 clone SHA-1 prokMSA_id:066306 AJ420322 clone SHA-110 2.11.026 OTU 1 seq prokMSA_id:068344 AF481216 Flexistipes sp. E3_33 E1 oral isolate 2.11.027 OTU 1 seq prokMSA_id:072767 AF220310 O11D9 2.11.028 OTU 1 seq prokMSA_id:078257 AB089065 clone:Rs-D89 2.11.029 OTU 1 seq prokMSA_id:078484 AJ536888 clone JG30-KF-AS13 2.11.030 OTU 1 seq prokMSA_id:078862 AJ536890 clone JG30-KF-CM45 2.11.032 OTU 6 seqs prokMSA_id:036907 AF058002 RFLP5 prokMSA_id:050590 AF229792 TA19 prokMSA_id:034890 AF395428 Eub No. 11 prokMSA_id:081956 AY217426 MTCE-T2 8D prokMSA_id:086683 AY231339 clone ER2_14 prokMSA_id:001638 U81735 clone vadinHA73. 2.11.033 OTU 1 seq prokMSA_id:082669 AY261810 low G+C Gram-positive clone PD-UASB-13 2.11.034 OTU 1 seq prokMSA_id:090125 AY297966 clone TA55_Ba_6 2.11.035 OTU 1 seq prokMSA_id:090441 AY297983 clone TA55_Ba_123 2.11.999 poor quality 47 seqs prokMSA_id:001639 AB011302 clone MUG10. prokMSA_id:001640 AB011339 clone TUG11. prokMSA_id:071964 AB069766 clone:DGGE-band 2 prokMSA_id:001650 AF071414 Thermoanaerovibrio acidaminovorans DSM 6589. prokMSA_id:001647 AF072581 Aminomonas paucivorans str. GLU-3. prokMSA_id:070169 AF161069 Thermanaerovibrio velox Z-9701 prokMSA_id:044684 AF209003 vent ML-8 prokMSA_id:072957 AF280844 mle1-5 prokMSA_id:030722 AF295743 isolate RFLP 187 prokMSA_id:025174 AF295744 isolate RFLP 191 prokMSA_id:031689 AF295746 isolate RFLP 26 prokMSA_id:044407 AF295755 isolate RFLP 423 prokMSA_id:028863 AF295756 isolate RFLP 426 prokMSA_id:041651 AF339854 clone K prokMSA_id:021890 AF339855 clone P prokMSA_id:039138 AF353291 Tui2-22 prokMSA_id:047797 AF408651 clone PCEDR56 prokMSA_id:072674 AF427915 clone 3G prokMSA_id:032053 AF427934 clone 7H prokMSA_id:052469 AF427939 clone 1G prokMSA_id:049717 AF427943 clone 6C prokMSA_id:029181 AF427946 clone 6B prokMSA_id:051157 AF447127 clone TDC-S1:4 prokMSA_id:035137 AF447139 clone TDC-S5:21 prokMSA_id:039696 AF447147 clone TDC-S1:14 prokMSA_id:071323 AF455057 clone B3 prokMSA_id:081826 AF466713 Dethiosulfovibrio sp. clone DBS10 prokMSA_id:046036 AF473919 firmicute 128-2-6 prokMSA_id:062649 AF515488 clone 2B14 prokMSA_id:062650 AF515489 clone 2B16 prokMSA_id:018668 AH010200 Lake Michigan sediment LMBA2 and genes prokMSA_id:022927 AJ238367 DGGE band 3 prokMSA_id:074434 AJ238370 DGGE band 8 prokMSA_id:018126 AJ288317 clone AC80 prokMSA_id:067030 AJ306760 clone SHA-104 prokMSA_id:073018 AY012521 Lake Michigan sediment LMBA2 prokMSA_id:081774 AY217403 PTCE-T2A 7D prokMSA_id:084955 AY256625 DGGE band A2-18 prokMSA_id:086408 AY256628 DGGE band A2-17 prokMSA_id:087240 AY261397 clone RFLP U11 prokMSA_id:085952 AY280639 low G+C Gram-positive clone G2-10 prokMSA_id:091889 AY344438 clone K200-15 prokMSA_id:001661 D63623 clone UN55. prokMSA_id:001662 L08066 Synergistes jonesii str. 78-1 ATCC 49833 . prokMSA_id:001652 U46538 clone SYNE4. prokMSA_id:001648 U81646 clone vadinBA23. prokMSA_id:001660 X91290 Bangombe boreholes at depth of 5-105m clone G38. 2.12 ENVIRONMENTAL_CLONE_OPB2_GROUP 34 seqs 2.12.001 OTU 1 seq prokMSA_id:001665 AB015559 str. BD4-9. 2.12.002 OTU 1 seq prokMSA_id:001664 AB015551 str. BD3-9. 2.12.003 OTU 1 seq prokMSA_id:001663 AF027088 clone OPB2. 2.12.004 OTU 1 seq prokMSA_id:017532 AY013695 Banisveld landfill BVC56 2.12.005 OTU 1 seq prokMSA_id:021388 AF224797 clone Car11fa 2.12.006 OTU 1 seq prokMSA_id:022610 AF224825 clone Car30c 2.12.007 OTU 1 seq prokMSA_id:024187 AF224816 clone Car90fb 2.12.008 OTU 1 seq prokMSA_id:026497 AF224850 clone Car121c 2.12.009 OTU 1 seq prokMSA_id:026789 AF224848 clone Car119rc 2.12.010 OTU 1 seq prokMSA_id:032360 AF224787 clone Car136b 2.12.011 OTU 1 seq prokMSA_id:037091 AF424409 candidate division OP3 MERTZ_21CM_45 2.12.012 OTU 1 seq prokMSA_id:040185 AF419696 C1_B035 2.12.013 OTU 1 seq prokMSA_id:049231 AY050598 clone GOUTB15 2.12.014 OTU 1 seq prokMSA_id:051459 AF195454 kpj58rc 2.12.015 OTU 1 seq prokMSA_id:065679 AF507707 soil clone S042 2.12.016 OTU 1 seq prokMSA_id:075117 AY164447 clone ULIB-67 2.12.017 OTU 5 seqs prokMSA_id:076899 AY164383 clone BLIB-72 prokMSA_id:075696 AY164396 clone DLIB-19 prokMSA_id:075862 AY164449 clone ULIB-69 prokMSA_id:083214 AY226198 clone ABBB-21 prokMSA_id:086543 AY226329 clone UBBB-31 2.12.018 OTU 1 seq prokMSA_id:076886 AY164408 clone DLIB-38 2.12.019 OTU 2 seqs prokMSA_id:088716 AJ567573 candidate division OP3 clone MBAE4 prokMSA_id:088076 AJ567574 candidate division OP3 clone MBAE10 2.12.020 OTU 1 seq prokMSA_id:091224 AY344402 clone K2-30-23 2.12.999 poor quality 9 seqs prokMSA_id:045100 AF224783 clone Car110rb prokMSA_id:028210 AF224830 clone Car40rc prokMSA_id:068856 AF332293 clone T26-33 prokMSA_id:055369 AF392792 clone CBH3 prokMSA_id:031528 AF392793 clone CDH5 prokMSA_id:059437 AF540825 clone dp10u32 prokMSA_id:057081 AJ518461 clone Neu4P3-80 prokMSA_id:030046 AY038539 firmicute clone CD1E6 prokMSA_id:043364 AY050576 clone GOUTA3 2.13 NITROSPINA_SUBDIVISION 1372 seqs 2.13.1 ENVIRONMENTAL_CLONE_JAP604_GROUP 4 seqs 2.13.1.999 poor quality 4 seqs prokMSA_id:001666 U09570 clone JAP504. prokMSA_id:001667 U09571 clone JAP604. prokMSA_id:001669 U09572 clone JAP750. prokMSA_id:001668 U09574 clone JAP751. 2.13.2 NITROSPINA_GROUP 51 seqs 2.13.2.001 OTU 1 seq prokMSA_id:001675 AB015560 str. BD4-10. 2.13.2.002 OTU 1 seq prokMSA_id:001674 AF186412 clone UC34f. 2.13.2.003 OTU 2 seqs prokMSA_id:098326 AY375081 clone B108 prokMSA_id:001673 L35504 Nitrospina gracilis str. Nb-211. 2.13.2.004 OTU 8 seqs prokMSA_id:019976 AF355044 delta Arctic97A-12 prokMSA_id:033912 AF355045 delta Arctic96BD-22 prokMSA_id:018838 AF440701 delta ARCT1-10 prokMSA_id:050477 AF440713 delta ARCT1-35 prokMSA_id:038851 AF440718 delta ARCT1-43 prokMSA_id:029972 AF440721 delta ARCT1-46 prokMSA_id:024168 AF469373 clone CTD73B prokMSA_id:076819 AY164433 delta clone ULIB-17 2.13.2.005 OTU 1 seq prokMSA_id:024135 AJ430587 Caldothrix abyssi strain LF13T 2.13.2.006 OTU 2 seqs prokMSA_id:024687 AJ296568 GR-296.I.52 clone GR-296.I.52 prokMSA_id:028255 AJ301566 delta GR-296.I.86 2.13.2.007 OTU 1 seq prokMSA_id:024743 AF424318 MERTZ_21CM_101 2.13.2.008 OTU 1 seq prokMSA_id:027569 AF355042 delta Arctic95C-6 2.13.2.009 OTU 3 seqs prokMSA_id:030315 AJ390441 soil PBS-II-5 prokMSA_id:028642 AJ390446 soil PBS-II-35 prokMSA_id:036982 AJ390459 soil PBS-III-32 2.13.2.010 OTU 1 seq prokMSA_id:031738 AF286031 Saltmarsh clone LCP-26 2.13.2.011 OTU 1 seq prokMSA_id:063930 AF424430 actinobacterium MERTZ_21CM_218 2.13.2.012 OTU 1 seq prokMSA_id:043480 AF285619 Car184f 2.13.2.013 OTU 1 seq prokMSA_id:047701 AB022642 delta SA71 2.13.2.014 OTU 1 seq prokMSA_id:059823 AY133365 clone BB2_84 2.13.2.015 OTU 1 seq prokMSA_id:063786 AY114318 candidate division BRC1 clone LD1-PA27 2.13.2.016 OTU 2 seqs prokMSA_id:063792 AY114313 candidate division WS3 clone LD1-PA16 prokMSA_id:063788 AY114319 candidate division WS3 clone LD1-PA30 2.13.2.017 OTU 1 seq prokMSA_id:065668 AF507721 soil clone S129 2.13.2.018 OTU 1 seq prokMSA_id:068888 AF323761 clone BA024 complete 2.13.2.019 OTU 1 seq prokMSA_id:070140 AJ431345 firmicute isolate ikaite un-c23 2.13.2.020 OTU 1 seq prokMSA_id:086024 AY226292 delta clone DBBB-40 2.13.2.021 OTU 1 seq prokMSA_id:094306 AY373420 clone A8 2.13.2.999 poor quality 18 seqs prokMSA_id:019639 AF186442 sponge symbiont PAWS53 prokMSA_id:020189 AF186443 sponge symbiont PAWS54 prokMSA_id:026837 AF194208 delta n34r prokMSA_id:023973 AF245646 delta NAC60-5 prokMSA_id:033360 AF257298 marine delta DHB-34 prokMSA_id:018068 AF332335 clone C26-21 prokMSA_id:022743 AF434977 sponge symbiont JAWS22 prokMSA_id:060767 AF434982 sponge symbiont JAWS5 prokMSA_id:033236 AF440698 delta ARCT1-2 prokMSA_id:017809 AF469369 clone 33-PA119B98 prokMSA_id:039671 AJ296614 GR-296.I.8 clone GR-296.I.8 prokMSA_id:058357 AJ489397 clone NS-I59 prokMSA_id:098186 AY211761 Gram-positive clone GoM GC234 676S6 prokMSA_id:086952 AY283105 delta clone NS-42 prokMSA_id:089890 AY311811 Dpcom113 prokMSA_id:001672 L35503 Nitrospina gracilis str. Nb-3. prokMSA_id:001670 X84521 str. SBR1093. prokMSA_id:001671 Z69326 str. s22. 2.13.3 ENVIRONMENTAL_CLONE_OS_K_GROUP 14 seqs 2.13.3.001 OTU 1 seq prokMSA_id:001678 U15118 Pele's Vents clone PVB_36. 2.13.3.002 OTU 1 seq prokMSA_id:020039 AF282254 Ferribacter thermoautotrophicus clone KA2b 2.13.3.003 OTU 2 seqs prokMSA_id:022489 AB011297 clone: MUG5 prokMSA_id:063243 AF523981 clone FW34 2.13.3.004 OTU 1 seq prokMSA_id:063251 AF523972 clone FW15 2.13.3.005 OTU 1 seq prokMSA_id:063800 AY114311 candidate division WS3 clone LD1-PA13 2.13.3.999 poor quality 8 seqs prokMSA_id:051040 AF104290 Geo-144 prokMSA_id:055928 AF432672 clone NMS8.155WL prokMSA_id:074542 AF540849 clone DP10-17 prokMSA_id:055405 AJ518229 clone Mul2P2-25 prokMSA_id:056982 AJ518588 clone Qui4P2-49 prokMSA_id:001679 L04711 Octopus Spring microbial mat from Yellowstone NP clone K. prokMSA_id:001676 U08392 clone A39. prokMSA_id:001677 U08393 clone A40. 2.13.4 ENVIRONMENTAL_CLONE_OPB5_GROUP 189 seqs 2.13.4.001 OTU 2 seqs prokMSA_id:001709 AF050555 clone WFeA1-59. prokMSA_id:089676 AY221615 soil clone HS9-75 2.13.4.002 OTU 1 seq prokMSA_id:001708 AF050554 clone WFeA1-35. 2.13.4.003 OTU 1 seq prokMSA_id:001707 AF050556 clone WCHA1-89. 2.13.4.004 OTU 3 seqs prokMSA_id:001706 AF050553 clone WCHA1-83. prokMSA_id:073076 AJ306781 clone SHA-124 prokMSA_id:095059 AJ583209 clone S15B-MN72 2.13.4.005 OTU 1 seq prokMSA_id:001705 AF050552 clone WCHA1-39. 2.13.4.006 OTU 1 seq prokMSA_id:001704 AB004576 clone TG14. 2.13.4.007 OTU 5 seqs prokMSA_id:001703 AB004575 clone TG13. prokMSA_id:077861 AB089049 Termite group 1 clone:Rs-D95 prokMSA_id:078103 AB089050 Termite group 1 clone:Rs-D43 prokMSA_id:077986 AB089051 Termite group 1 clone:Rs-H93 prokMSA_id:078190 AB089052 Termite group 1 clone:Rs-M73 2.13.4.008 OTU 1 seq prokMSA_id:001702 AJ241003 clone Sva0725. 2.13.4.009 OTU 3 seqs prokMSA_id:001701 AB013270 str. NKB18. prokMSA_id:019789 AF224839 clone Car60fc prokMSA_id:045395 AF424331 candidate division OP8 MERTZ_21CM_147 2.13.4.010 OTU 2 seqs prokMSA_id:001699 AB031629 str. TIHP368-03. prokMSA_id:001700 AB031633 str. TIHP368-11. 2.13.4.011 OTU 8 seqs prokMSA_id:001698 AB011351 clone TUG23. prokMSA_id:001687 AF027060 clone OPB95. prokMSA_id:001694 AF027064 clone OPS150. prokMSA_id:001695 AF027065 clone OPS12. prokMSA_id:001696 AF027066 clone OPT3. prokMSA_id:020348 AF254405 UASB_TL56 complete prokMSA_id:039529 AF402984 clone prokMSA_id:089796 AY297963 clone TA55_Ba_3 2.13.4.012 OTU 4 seqs prokMSA_id:001688 AJ133617 clone KTK 32. prokMSA_id:075122 AY164419 clone DLIB-79 prokMSA_id:084027 AY226221 KB1 group clone ABBB-7 prokMSA_id:085201 AY226238 KB1 group clone BBBB-26 2.13.4.013 OTU 4 seqs prokMSA_id:001680 AF027067 clone OPB5. prokMSA_id:001684 AF027068 clone OPB23. prokMSA_id:001685 AF027069 clone OPS19A. prokMSA_id:001686 AF027070 clone OPS37. 2.13.4.014 OTU 2 seqs prokMSA_id:001683 AB015552 str. BD3-11. prokMSA_id:048834 AJ310389 strain NS1019 2.13.4.015 OTU 12 seqs prokMSA_id:038720 AB054007 anoxic sludge KU2 prokMSA_id:029574 AF202655 Anoxic biofilm clone Pla1-47 prokMSA_id:040184 AF202656 Anoxic biofilm clone Pla1-48 prokMSA_id:040152 AF202657 Anoxic biofilm clone Pla1-44 prokMSA_id:030943 AF202658 Anoxic biofilm clone Pla2-10 prokMSA_id:019967 AF202659 Anoxic biofilm clone Pla1-14 prokMSA_id:032022 AF202660 Anoxic biofilm clone Pla1-1 prokMSA_id:021761 AF202661 Anoxic biofilm clone Pla2-19 prokMSA_id:048522 AF202662 Anoxic biofilm clone Pla2-22 prokMSA_id:045461 AF202663 Anoxic biofilm clone Pla2-48 prokMSA_id:053683 AF375995 Candidatus Kuenenia stuttgartiensis complete ; internal transcribed spacer 1 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:001682 AJ250882 str. KOLL2a. 2.13.4.016 OTU 1 seq prokMSA_id:001681 AJ224540 str. clone koll11. 2.13.4.017 OTU 1 seq prokMSA_id:017055 AF328222 clone KS89 2.13.4.018 OTU 4 seqs prokMSA_id:027975 AF424463 planctomycete MERTZ_2CM_127 prokMSA_id:019671 AF424468 planctomycete MERTZ_2CM_268 prokMSA_id:074112 AF424477 MERTZ_0CM_380 prokMSA_id:092388 AY257181 Candidatus Scalindua sorokinii 2.13.4.019 OTU 1 seq prokMSA_id:020117 AF424436 candidate division OP11 MERTZ_2CM_33 2.13.4.020 OTU 1 seq prokMSA_id:021741 AJ390472 soil PBS-114 2.13.4.021 OTU 2 seqs prokMSA_id:023626 AF424326 candidate division OP8 MERTZ_21CM_186 prokMSA_id:035212 AF424328 candidate division OP8 MERTZ_2CM_346 2.13.4.022 OTU 1 seq prokMSA_id:023667 AF259647 CtaxTah-42 2.13.4.023 OTU 1 seq prokMSA_id:024019 AJ390448 soil PBS-III-2 2.13.4.024 OTU 2 seqs prokMSA_id:025261 AF424325 candidate division OP8 MERTZ_2CM_108 prokMSA_id:051674 AF424329 candidate division OP8 MERTZ_21CM_72 2.13.4.025 OTU 2 seqs prokMSA_id:041845 AF320968 Lake Michigan sediment LMBA8 prokMSA_id:027430 AH010358 Lake Michigan sediment LMBA8 and genes 2.13.4.026 OTU 1 seq prokMSA_id:028149 AB057453 planctomycete clone:KSU-1 2.13.4.027 OTU 1 seq prokMSA_id:030457 AF424327 candidate division OP8 MERTZ_2CM_344 2.13.4.028 OTU 1 seq prokMSA_id:032255 AJ390463 soil PBS-25 2.13.4.029 OTU 1 seq prokMSA_id:033161 AF419671 a2b010 2.13.4.030 OTU 1 seq prokMSA_id:070520 AF419691 C1_B017 2.13.4.031 OTU 1 seq prokMSA_id:034948 AJ133618 'KTK 36' 2.13.4.032 OTU 1 seq prokMSA_id:071636 AF320943 Lake Michigan sediment LMBA27 2.13.4.034 OTU 1 seq prokMSA_id:039518 AF320967 Lake Michigan sediment LMBA8 2.13.4.035 OTU 1 seq prokMSA_id:041163 AF424408 candidate division OP3 MERTZ_2CM_315 2.13.4.036 OTU 1 seq prokMSA_id:069630 AF545657 candidate division BD clone stbd14 2.13.4.037 OTU 1 seq prokMSA_id:049483 AF424330 candidate division OP8 MERTZ_21CM_86 2.13.4.038 OTU 1 seq prokMSA_id:052397 AF027097 Candidate division OP2 clone OPB25 complete 2.13.4.039 OTU 1 seq prokMSA_id:053679 AJ249097 SHA-89 2.13.4.040 OTU 1 seq prokMSA_id:059916 AY133074 Termite group 1 clone ccs37 2.13.4.042 OTU 3 seqs prokMSA_id:036990 AF269003 SBR2095 prokMSA_id:060591 AF407708 clone G58 prokMSA_id:066550 AY100531 clone cvf65170 2.13.4.043 OTU 1 seq prokMSA_id:061847 AF449263 candidate division OP8 clone R76-B102 2.13.4.044 OTU 1 seq prokMSA_id:063198 AF524029 clone FW97 2.13.4.045 OTU 1 seq prokMSA_id:063567 AB069804 clone:CS8.15 2.13.4.046 OTU 1 seq prokMSA_id:070747 AF419670 a2b031 2.13.4.047 OTU 1 seq prokMSA_id:074716 AJ390462 soil PBS-22 2.13.4.048 OTU 6 seqs prokMSA_id:075086 AY164353 clone ALIB-64 prokMSA_id:075000 AY164360 clone ALIB-88 prokMSA_id:075011 AY164402 clone DLIB-29 prokMSA_id:084782 AY226215 clone ABBB-56 prokMSA_id:086632 AY226231 clone ABBB-96 prokMSA_id:083255 AY226237 clone BBBB-22 2.13.4.049 OTU 2 seqs prokMSA_id:075709 AY164423 clone DLIB-9 prokMSA_id:086139 AY226242 clone BBBB-32 2.13.4.050 OTU 1 seq prokMSA_id:076549 AJ519391 Holophaga sp. clone JG37-AG-144 2.13.4.051 OTU 1 seq prokMSA_id:076743 AJ519649 clone Sh765B-TzT/AG-34 2.13.4.052 OTU 1 seq prokMSA_id:077032 AJ519671 clone GuBH2-AD-75 2.13.4.053 OTU 1 seq prokMSA_id:080983 AY193179 clone O1aA90 2.13.4.054 OTU 1 seq prokMSA_id:082144 AY218548 clone KD1-1 2.13.4.055 OTU 1 seq prokMSA_id:082485 AY280646 clone G2-7 2.13.4.056 OTU 1 seq prokMSA_id:083131 AJ495666 isolate SB-20 2.13.4.057 OTU 1 seq prokMSA_id:083986 AY226324 KB1 group clone UBBB-10 2.13.4.058 OTU 1 seq prokMSA_id:084429 AY226283 planctomycete clone DBBB-136 2.13.4.059 OTU 1 seq prokMSA_id:088929 AY221610 gamma clone HS9-30 2.13.4.060 OTU 1 seq prokMSA_id:090412 AY191339 candidate division OP8 isolate ODP1176A1H_6_B 2.13.4.061 OTU 1 seq prokMSA_id:090764 AY289397 soil clone ABS-19 2.13.4.062 OTU 1 seq prokMSA_id:094589 AJ583207 clone S15B-MN11 2.13.4.063 OTU 1 seq prokMSA_id:095215 AY225645 Acidobacteriaceae clone AT-s36 2.13.4.064 OTU 1 seq prokMSA_id:096804 AY225643 Acidobacteriaceae clone AT-s3-37 2.13.4.065 OTU 1 seq prokMSA_id:097300 AY225644 Acidobacteriaceae clone AT-s65 2.13.4.066 OTU 1 seq prokMSA_id:098027 AY424820 clone mv13.11 2.13.4.999 poor quality 76 seqs prokMSA_id:001689 AB000697 clone 8 of cluster III. prokMSA_id:001690 AB000698 clone 30 of cluster III. prokMSA_id:001697 AB011311 clone MUG19. prokMSA_id:001691 AF027061 clone OPS35B. prokMSA_id:001692 AF027062 clone OPS88. prokMSA_id:001693 AF027063 clone OPS92A. prokMSA_id:047377 AF128702 soil S0166 prokMSA_id:044010 AF193567 clone n23d prokMSA_id:045190 AF194209 delta n40d prokMSA_id:045907 AF209019 vent ML-7 prokMSA_id:069997 AF320944 Lake Michigan sediment LMBA27 prokMSA_id:050585 AF332254 clone C12-8 prokMSA_id:050187 AF332267 clone C12-7 prokMSA_id:022595 AF332331 clone C26-16 prokMSA_id:040446 AF361210 Deinococcus sp. clone SUBT-6 prokMSA_id:068312 AF361653 clone MN16BT2-15 prokMSA_id:068026 AF365724 clone BT60DS4BA2 prokMSA_id:067927 AF365845 clone BT60PA10BE7 prokMSA_id:023922 AF369711 clone 155 prokMSA_id:042981 AF369712 clone 230 prokMSA_id:043794 AF392744 clone LAF12 prokMSA_id:068962 AF392794 clone LAH1 prokMSA_id:022303 AF432313 Holophaga sp. 0%N-6d-1 prokMSA_id:061223 AF432678 clone NMS8.65WL prokMSA_id:077254 AF432743 clone N27.47SM prokMSA_id:067225 AF452894 candidate division OP8 prokMSA_id:065875 AF507450 soil clone C024 prokMSA_id:061162 AF530098 isolate MGP DGGE Band 6B prokMSA_id:061154 AF530105 isolate MGP DGGE Band 12B prokMSA_id:073275 AH010346 Lake Michigan sediment LMBA27 and genes prokMSA_id:072627 AJ011661 DGGE amplificate BS5 prokMSA_id:034786 AJ278524 alpha clone 3-1 prokMSA_id:016738 AJ296618 Anaerobic ammonium-oxidizing planctomycete GR-WP33-59 clone GR-WP33-59 prokMSA_id:036993 AJ296619 Anaerobic ammonium-oxidizing planctomycete GR-WP33-66 clone GR-WP33-66 prokMSA_id:035505 AJ296620 anaerobic ammonium-oxidizing planctomycete GR-WP54-11 clone GR-WP54-11 prokMSA_id:024716 AJ296629 anaerobic ammonium-oxidizing planctomycete GR-WP33-41 clone GR-WP33-41 prokMSA_id:051267 AJ297460 planctomycete Sva0628 prokMSA_id:027311 AJ301578 Anaerobic ammonium-oxidizing planctomycete GR-WP33-37 prokMSA_id:072428 AJ305061 82-6 prokMSA_id:044417 AJ431292 Planctomyces sp. clone 1_38 prokMSA_id:082549 AJ495653 isolate SB-6 prokMSA_id:086188 AJ495656 isolate SB-9 prokMSA_id:086157 AJ495657 isolate SB-10 prokMSA_id:085832 AJ495687 isolate SB-42 prokMSA_id:056892 AJ518710 clone Sai4P3-20 prokMSA_id:094451 AJ582233 Thiococcus sp. clone AC11 prokMSA_id:094628 AJ582243 candidate division OP8 clone AC31 prokMSA_id:094899 AJ582245 candidate division OP8 clone AC35 prokMSA_id:094584 AJ582264 candidate division OP8 clone AC116 prokMSA_id:069237 AY143716 clone Lu99 prokMSA_id:078361 AY167666 planctomycete clone PLA16 prokMSA_id:077826 AY167667 planctomycete clone PLA17 prokMSA_id:077599 AY167668 planctomycete clone PLA18 prokMSA_id:080253 AY193007 candidate divsion OS-K prokMSA_id:080641 AY193068 candidate division OP8 clone OBPB1 prokMSA_id:080268 AY193073 candidate division OP8 clone OBPB54 prokMSA_id:080661 AY193076 candidate division OP8 clone OBPB62 prokMSA_id:079997 AY193079 candidate division OP8 clone OBPB72 prokMSA_id:080658 AY193081 candidate division OP8 clone OBPB75 prokMSA_id:080256 AY193082 candidate division OP8 clone OBPB77 prokMSA_id:080758 AY193084 candidate division OP8 clone OBPB82 prokMSA_id:080023 AY193087 candidate division OP8 clone OBPB94 prokMSA_id:080210 AY193120 candidate division OP8 clone OBPB60 prokMSA_id:079908 AY193121 candidate division OP8 clone OBPB78 prokMSA_id:079747 AY193124 candidate division OP8 clone OBPB32 prokMSA_id:085892 AY197394 clone B02R006 prokMSA_id:082996 AY214722 Gemmatimonadetes clone SL2-2-D3F prokMSA_id:086101 AY242633 soil clone Tc121-157 prokMSA_id:087261 AY261420 clone RFLP U99 prokMSA_id:087958 AY283150 planctomycete clone NS-61 prokMSA_id:089018 AY304014 soil clone Dpcom53 prokMSA_id:090206 AY311802 Dpcom104 prokMSA_id:093566 AY357954 cEV11 prokMSA_id:093338 AY357959 cEV16 prokMSA_id:093751 AY357970 cEV29 prokMSA_id:094146 AY364046 clone cRI34c 2.13.5 ENVIRONMENTAL_CLONE_RB25_GROUP 96 seqs 2.13.5.002 OTU 5 seqs prokMSA_id:001716 AB013269 str. NKB17. prokMSA_id:029296 AF424304 MERTZ_2CM_132 prokMSA_id:051272 AF424317 MERTZ_21CM_48 prokMSA_id:078237 AJ535239 Holophaga sp. clone Hyd24-44 prokMSA_id:059825 AY133362 clone OB3_63 2.13.5.003 OTU 1 seq prokMSA_id:001712 AF142973 clone TAYNAYA-25. 2.13.5.004 OTU 1 seq prokMSA_id:001711 AB015586 str. BD7-11. 2.13.5.006 OTU 5 seqs prokMSA_id:022241 AF424305 MERTZ_2CM_152 prokMSA_id:001717 AJ241004 clone Sva0515. prokMSA_id:075917 AJ519382 Holophaga sp. clone JG37-AG-81 prokMSA_id:076459 AJ532721 clone JG34-KF-153 prokMSA_id:001710 Z95718 clone RB25. 2.13.5.007 OTU 1 seq prokMSA_id:022133 AF333552 clone R214 2.13.5.008 OTU 5 seqs prokMSA_id:074326 AJ306763 clone SHA-71 prokMSA_id:041683 AJ390460 soil PBS-III-32a prokMSA_id:042714 AJ390480 soil PRR-10 prokMSA_id:022777 AJ390482 soil PRR-12 prokMSA_id:094268 AJ582051 Planctomycetales clone JG36-GS-103 2.13.5.009 OTU 1 seq prokMSA_id:027588 AF328205 clone KS68 2.13.5.010 OTU 1 seq prokMSA_id:028793 AJ390458 soil PBS-III-30 2.13.5.011 OTU 1 seq prokMSA_id:032627 AF333551 clone R78 2.13.5.012 OTU 1 seq prokMSA_id:033996 AF328201 clone KS63 2.13.5.013 OTU 1 seq prokMSA_id:037222 AY037724 earthworm cast clone C076 2.13.5.014 OTU 1 seq prokMSA_id:069799 AF259630 delta CtaxPhil-2 2.13.5.015 OTU 1 seq prokMSA_id:040189 AF333537 gamma clone R125 2.13.5.016 OTU 1 seq prokMSA_id:041337 AF328224 clone KS93 2.13.5.017 OTU 1 seq prokMSA_id:044715 AF424307 MERTZ_2CM_263 2.13.5.018 OTU 1 seq prokMSA_id:045661 AF280852 mle1-16 2.13.5.019 OTU 1 seq prokMSA_id:046217 AF424256 delta MERTZ_21CM_290 2.13.5.020 OTU 2 seqs prokMSA_id:047657 AF259612 CtaxMed-34 prokMSA_id:096645 AY225648 Acidobacteriaceae clone AT-s3-42 2.13.5.021 OTU 1 seq prokMSA_id:048845 AF328218 clone KS85 2.13.5.022 OTU 1 seq prokMSA_id:048940 AF424316 MERTZ_21CM_17 2.13.5.023 OTU 1 seq prokMSA_id:050820 AJ390476 soil PRR-1D 2.13.5.024 OTU 1 seq prokMSA_id:063239 AF523986 clone FW144 2.13.5.025 OTU 1 seq prokMSA_id:063775 AY114331 candidate division BRC1 clone LD1-PB16 2.13.5.026 OTU 1 seq prokMSA_id:066552 AY100528 clone cvf64048 2.13.5.027 OTU 1 seq prokMSA_id:073339 AF507712 soil clone S0134 2.13.5.028 OTU 1 seq prokMSA_id:073910 AF385537 Holophaga sp. oral clone CA002 2.13.5.029 OTU 3 seqs prokMSA_id:076461 AJ519669 clone GuBH2-AD-8 prokMSA_id:079044 AY177763 Gram-positive isolate 5G01 prokMSA_id:097988 AY225657 low G+C Gram-positive clone AT-s30 2.13.5.030 OTU 1 seq prokMSA_id:077057 AJ519632 delta clone Sh765B-AG-71 2.13.5.031 OTU 1 seq prokMSA_id:079823 AY193249 Acidobacteria clone Bol95 2.13.5.032 OTU 1 seq prokMSA_id:080694 AB094926 clone:OHKB9.54 2.13.5.033 OTU 1 seq prokMSA_id:081987 AY216450 clone KM47 2.13.5.034 OTU 1 seq prokMSA_id:086578 AY226214 clone ABBB-55 2.13.5.035 OTU 1 seq prokMSA_id:095646 AY225649 Acidobacteriaceae clone AT-s54 2.13.5.036 OTU 1 seq prokMSA_id:096016 AY225641 Acidobacteriaceae clone AT-s3-24 2.13.5.037 OTU 1 seq prokMSA_id:097371 AY225650 Acidobacteriaceae clone AT-s2-57 2.13.5.038 OTU 1 seq prokMSA_id:098176 AY225642 Acidobacteriaceae clone AT-s3-59 2.13.5.039 OTU 1 seq prokMSA_id:098515 AY225647 Acidobacteriaceae clone AT-s3-23 2.13.5.040 OTU 1 seq prokMSA_id:098520 AY375053 clone B141 2.13.5.041 OTU 1 seq prokMSA_id:098554 AY225651 Acidobacteriaceae clone AT-s3-56 2.13.5.999 poor quality 42 seqs prokMSA_id:092891 AB116924 clone:LB3 prokMSA_id:092051 AB116931 clone:LB10 prokMSA_id:092270 AB116933 clone:LB12 prokMSA_id:001715 AF010034 unnamed organism. prokMSA_id:034243 AF211307 CE50 prokMSA_id:044694 AF332263 clone C12-9 prokMSA_id:035056 AF332308 clone T26-22 prokMSA_id:052113 AF332311 clone T26-27 prokMSA_id:021308 AF332338 clone C26-22 prokMSA_id:033064 AF332341 clone C26-17 prokMSA_id:019641 AF357996 clone LO12.5 prokMSA_id:068031 AF365716 clone BT60DS1BH3 prokMSA_id:028687 AF388353 clone Ac93 prokMSA_id:016682 AF424319 MERTZ_21CM_104 prokMSA_id:067137 AF499314 clone JCL4-53 prokMSA_id:067134 AF499315 clone JCL4-32 prokMSA_id:067125 AF499324 clone JCL4-51 prokMSA_id:067111 AF499343 clone JCL9-99 prokMSA_id:067089 AF499370 clone JCL9-115 prokMSA_id:065894 AF507427 soil clone C060 prokMSA_id:065858 AF507470 soil clone S071 prokMSA_id:065798 AF507536 soil clone S0163 prokMSA_id:065745 AF507637 soil clone C1104 prokMSA_id:065726 AF507653 soil clone C1228 prokMSA_id:056658 AF530093 isolate MGP DGGE Band 2 prokMSA_id:059422 AF540846 clone DP11u28 prokMSA_id:001713 AJ006089 clone TBS25. prokMSA_id:026335 AJ006090 clone TBS21 prokMSA_id:072711 AJ011660 DGGE amplificate BS4 prokMSA_id:046390 AJ238371 DGGE band 1 prokMSA_id:044602 AJ431281 clone 1_31 prokMSA_id:057078 AJ518463 clone Neu4P3-85 prokMSA_id:044129 AY037628 soil clone S115 prokMSA_id:059822 AY133363 clone OB3_85 prokMSA_id:059824 AY133366 clone BB2_12 prokMSA_id:059819 AY133367 clone BB2_203 prokMSA_id:076964 AY164358 clone ALIB-82 prokMSA_id:079635 AY193251 Acidobacteria clone Bol57 prokMSA_id:083489 AY197421 clone B04R027 prokMSA_id:087470 AY279049 clone CS004 prokMSA_id:098373 AY391649 soil clone M33 prokMSA_id:001714 U43648 clone EH-6. 2.13.6 ENVIRONMENTAL_CLONE_III1-8_GROUP 88 seqs 2.13.6.001 OTU 6 seqs prokMSA_id:036581 AF424303 MERTZ_2CM_131 prokMSA_id:017090 AF424310 MERTZ_2CM_326 prokMSA_id:050375 AF424311 MERTZ_2CM_336 prokMSA_id:019014 AF424323 MERTZ_21CM_220 prokMSA_id:001724 AJ240998 clone Sva0450. prokMSA_id:056333 AY133361 clone BB2_63 2.13.6.002 OTU 1 seq prokMSA_id:001722 AF146238 clone CLEAR-14. 2.13.6.003 OTU 6 seqs prokMSA_id:001721 AF186414 clone UC38fp. prokMSA_id:040884 AF434945 sponge symbiont RSWS17 prokMSA_id:033722 AF434949 sponge symbiont RSWS20 prokMSA_id:018334 AF434957 sponge symbiont RSWS3 prokMSA_id:060180 AJ347029 clone TK29 prokMSA_id:060161 AJ347052 clone TK85 2.13.6.004 OTU 1 seq prokMSA_id:001720 AJ009479 clone SJA-88. 2.13.6.005 OTU 2 seqs prokMSA_id:001719 AJ009461 clone SJA-36. prokMSA_id:084306 AY208806 clone LKC2.127-11 2.13.6.006 OTU 1 seq prokMSA_id:001718 Z95729 clone iii1-8. 2.13.6.007 OTU 1 seq prokMSA_id:022970 AJ390449 soil PBS-III-4 2.13.6.008 OTU 3 seqs prokMSA_id:065891 AF507433 soil clone C0200 prokMSA_id:065637 AF507759 soil clone S1145 prokMSA_id:056349 AF507760 soil clone S1146 2.13.6.009 OTU 1 seq prokMSA_id:060726 AF455063 clone B9 2.13.6.010 OTU 2 seqs prokMSA_id:065719 AF507663 soil clone C1125 prokMSA_id:065631 AF507766 soil clone S1154 2.13.6.011 OTU 1 seq prokMSA_id:065790 AF507548 soil clone S0217 2.13.6.012 OTU 1 seq prokMSA_id:065850 AF507478 soil clone S049 2.13.6.013 OTU 1 seq prokMSA_id:065881 AF507444 soil clone C0110 2.13.6.014 OTU 3 seqs prokMSA_id:065924 AF507393 soil clone C044 prokMSA_id:065917 AF507400 soil clone C0184 prokMSA_id:090300 AY289393 soil clone DS-18 2.13.6.015 OTU 1 seq prokMSA_id:076467 AJ519667 Holophaga sp. clone GuBH2-AG-47 2.13.6.016 OTU 1 seq prokMSA_id:077837 AB089124 clone:Rs-H88 2.13.6.017 OTU 1 seq prokMSA_id:078123 AJ535231 delta clone Hyd24-32 2.13.6.018 OTU 1 seq prokMSA_id:083850 AY217494 Acidobacteria clone WCB116 2.13.6.019 OTU 2 seqs prokMSA_id:086560 AY274137 clone D131 prokMSA_id:085300 AY274156 clone D39 2.13.6.020 OTU 1 seq prokMSA_id:089710 AY245487 ML28_ANME5 2.13.6.021 OTU 1 seq prokMSA_id:089837 AY327238 clone ZB12 2.13.6.022 OTU 1 seq prokMSA_id:089906 AJ577104 Gemmatimonas sp. clone 27 2.13.6.023 OTU 1 seq prokMSA_id:095473 AY160875 clone COB P4-24 2.13.6.999 poor quality 48 seqs prokMSA_id:016291 AF010056 prokMSA_id:026299 AF128673 soil S0110 prokMSA_id:029976 AF186432 sponge symbiont PAUC40 prokMSA_id:060768 AF186436 sponge symbiont PAUC49 prokMSA_id:051461 AF186439 sponge symbiont PAUC54 prokMSA_id:048870 AF186440 sponge symbiont PAUC55 prokMSA_id:028399 AF223278 delta B2M12 prokMSA_id:052214 AF332314 clone T26-19 prokMSA_id:068928 AF388312 clone Ac89 prokMSA_id:055365 AF432667 clone NOS7.36WL prokMSA_id:061222 AF432679 clone NMS8.79WL prokMSA_id:061219 AF432682 clone SMS9.105WL prokMSA_id:076205 AF432722 clone S21.36WL prokMSA_id:077255 AF432734 clone N26.105SM prokMSA_id:019886 AF434939 sponge symbiont RSWS9 prokMSA_id:048287 AF434948 sponge symbiont RSWS2 prokMSA_id:017007 AF434953 sponge symbiont RSWS25 prokMSA_id:037039 AF434954 sponge symbiont RSWS26 prokMSA_id:046799 AF434958 sponge symbiont RSWS30 prokMSA_id:043895 AF434959 sponge symbiont RSWS4 prokMSA_id:017935 AF434962 sponge symbiont RSWS7 prokMSA_id:065783 AF507590 soil clone C138 prokMSA_id:065757 AF507622 soil clone C1107 prokMSA_id:065740 AF507640 soil clone C1192 prokMSA_id:055462 AJ347049 clone TK70 prokMSA_id:071346 AJ347078 clone TK72 prokMSA_id:073983 AJ421210 clone C4-K19 prokMSA_id:040158 AJ431280 Holophaga group clone 1_30 prokMSA_id:057277 AJ518204 clone Mul2P1-51 prokMSA_id:057207 AJ518296 clone Mul2P3-72 prokMSA_id:057124 AJ518410 clone Neu4P2-89 prokMSA_id:057068 AJ518477 clone Qui2P1-31 prokMSA_id:057037 AJ518512 clone Qui2P2-61 prokMSA_id:057035 AJ518516 clone Qui2P2-78 prokMSA_id:056934 AJ518645 clone Sai2P1-86 prokMSA_id:089173 AJ577303 clone 15 prokMSA_id:094699 AJ582262 Cellvibrio sp. clone AC112 prokMSA_id:049302 AY037561 soil clone S009 prokMSA_id:068936 AY046064 clone 3-4 5 prokMSA_id:036038 AY046067 clone 1-1 3 prokMSA_id:069340 AY143728 candidate division BD clone P77 prokMSA_id:069450 AY143747 soil clone Lu1 prokMSA_id:081703 AY216448 clone KM41 prokMSA_id:093601 AY357984 cEV45 prokMSA_id:001726 D26242 soil from paddy field clone PAD55. prokMSA_id:001725 D26264 soil from soybean field clone FIE12. prokMSA_id:001727 D26265 soil from soybean field clone FIE13. prokMSA_id:001723 U81543 clone p712-45. 2.13.7 ENVIRONMENTAL_CLONE_32-20_GROUP 23 seqs 2.13.7.001 OTU 1 seq prokMSA_id:001731 AF142924 clone PENDANT-12. 2.13.7.002 OTU 3 seqs prokMSA_id:079707 AY192216 Acidobacteria clone P2-7G prokMSA_id:088186 AY289395 soil clone ABS-327 prokMSA_id:001728 Z95713 clone 32-20. 2.13.7.003 OTU 1 seq prokMSA_id:075259 AJ519397 actinobacterium clone JG37-AG-36 2.13.7.004 OTU 1 seq prokMSA_id:083983 BX294712 planctomycete clone CY0ARA025H04 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.13.7.005 OTU 1 seq prokMSA_id:084172 BX294875 planctomycete clone CY0ARA032D01 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.13.7.006 OTU 1 seq prokMSA_id:085259 AY242649 soil clone Tc130-29 2.13.7.999 poor quality 15 seqs prokMSA_id:092773 AB116934 clone:LB13 prokMSA_id:001729 AF078209 unnamed organism. prokMSA_id:001730 AF078371 unnamed organism. prokMSA_id:023959 AF128691 soil S077 prokMSA_id:041140 AF142920 PENDANT-7 prokMSA_id:030395 AF428963 clone CR99-35-05 prokMSA_id:076585 AF431418 Acidobacterium group clone C16.38WL prokMSA_id:076479 AF431424 Acidobacterium group clone C17.19WL prokMSA_id:076216 AF431514 Acidobacterium group clone S52.40PG prokMSA_id:075428 AF431515 Acidobacterium group clone S52.42PG prokMSA_id:061224 AF432677 clone NMS8.59WL prokMSA_id:070856 AJ518281 clone Mul2P3-26 prokMSA_id:079790 AY192210 Acidobacteria clone P1-3C prokMSA_id:080739 AY192221 Acidobacteria clone P2-12F prokMSA_id:097347 AY391628 soil clone M12 2.13.8 HP.FOETIDA_GROUP 48 seqs 2.13.8.002 OTU 1 seq prokMSA_id:001733 AJ009478 clone SJA-87. 2.13.8.003 OTU 1 seq prokMSA_id:001732 X77215 Holophaga foetida str. TMBS4 DSM 6591 . 2.13.8.005 OTU 11 seqs prokMSA_id:055664 AF529125 Acidobacterium group clone FTLM5 prokMSA_id:076766 AJ519665 Holophaga sp. clone GuBH2-AD-9 prokMSA_id:076099 AJ534690 Acidobacterium group clone S15A-MN55 prokMSA_id:095148 AJ583203 Geothrix sp. clone S15B-MN21 prokMSA_id:076031 AY159174 RO_clone_17 prokMSA_id:075771 AY159179 RO_clone_73 prokMSA_id:077215 AY159191 RO_clone_12B prokMSA_id:076637 AY159195 RO_clone_12 prokMSA_id:075012 AY159199 RO_clone_106 prokMSA_id:075105 AY159201 RO_clone_146 prokMSA_id:001736 U41563 "Geothrix fermentans". 2.13.8.006 OTU 1 seq prokMSA_id:062398 AF529124 clone FTLM45 2.13.8.007 OTU 1 seq prokMSA_id:062399 AF529120 delta clone FTLM205 2.13.8.008 OTU 1 seq prokMSA_id:075904 AY159196 RO_clone_25B 2.13.8.009 OTU 1 seq prokMSA_id:076959 AY159190 RO_clone_16C 2.13.8.010 OTU 1 seq prokMSA_id:077030 AY159192 RO_clone_21 2.13.8.011 OTU 1 seq prokMSA_id:077136 AY159172 RO_clone_7B 2.13.8.999 poor quality 29 seqs prokMSA_id:001739 AF016734 unnamed organism. prokMSA_id:001737 AF034893 "Geothrix Geothrix gel band DL970". prokMSA_id:016315 AF104277 Gthrx-84 prokMSA_id:022243 AF104280 Benz-89 prokMSA_id:001735 AF107516 Holophaga SY3-4. prokMSA_id:001734 AF107520 Holophaga SY3-41. prokMSA_id:029772 AF423268 soil clone 474-2 prokMSA_id:074818 AF428927 clone CR98-35-45 prokMSA_id:049690 AF429072 clone CR99-7-38 prokMSA_id:053226 AF429085 clone CR99-7-51 prokMSA_id:036173 AF429147 clone CR99-24-37 prokMSA_id:067224 AF452895 Holophaga sp. prokMSA_id:068698 AF484064 clone p23 prokMSA_id:066332 AF508205 clone CN MLS Band10_1 prokMSA_id:058809 AF534263 Acidobacteriaceae clone geothrix g1 prokMSA_id:001738 AJ250030 clone LCS-02. prokMSA_id:043477 AJ252671 Rhizosphere soil clone RSC-II-7 prokMSA_id:071926 AJ518110 clone Mul01-15 prokMSA_id:057310 AJ518134 clone Mul01-69 prokMSA_id:057291 AJ518184 clone Mul2P1-10 prokMSA_id:071656 AJ518345 clone Neu2P2-97 prokMSA_id:057065 AJ518479 clone Qui2P1-34 prokMSA_id:056997 AJ518570 clone Qui4P2-23b prokMSA_id:056946 AJ518633 clone Sai1P1-57 prokMSA_id:056937 AJ518648 clone Sai2P2-10 prokMSA_id:056926 AJ518664 clone Sai2P2-55 prokMSA_id:056869 AJ518734 clone Sai4P3-58 prokMSA_id:056849 AJ518757 clone Sai4P3-93 prokMSA_id:076005 AY159197 RO_clone_25C 2.13.9 ENVIRONMENTAL_CLONE_S027_GROUP 352 seqs 2.13.9.001 OTU 1 seq prokMSA_id:001798 AF013565 unnamed organism. 2.13.9.002 OTU 1 seq prokMSA_id:001797 AF013560 clone S111. 2.13.9.003 OTU 2 seqs prokMSA_id:001794 AF013542 unnamed organism. prokMSA_id:065919 AF507398 soil clone C0207 2.13.9.004 OTU 2 seqs prokMSA_id:001793 AF013523 unnamed organism. prokMSA_id:055523 AF507379 soil clone C0192 2.13.9.005 OTU 6 seqs prokMSA_id:001792 AF013516 unnamed organism. prokMSA_id:065928 AF507388 soil clone C038 prokMSA_id:065925 AF507392 soil clone C0152 prokMSA_id:065916 AF507401 soil clone C0188 prokMSA_id:065914 AF507406 soil clone C0214 prokMSA_id:065910 AF507410 soil clone C0213 2.13.9.009 OTU 1 seq prokMSA_id:001785 AF013564 unnamed organism. 2.13.9.012 OTU 1 seq prokMSA_id:001772 AF013553 unnamed organism. 2.13.9.015 OTU 1 seq prokMSA_id:001769 U68644 clone P8. 2.13.9.018 OTU 1 seq prokMSA_id:001750 AF013524 unnamed organism. 2.13.9.021 OTU 4 seqs prokMSA_id:001747 AF013563 unnamed organism. prokMSA_id:031809 AF445148 clone Tc90 prokMSA_id:001745 Z95708 clone 11-24. prokMSA_id:036828 Z95723 species clone RB43 2.13.9.022 OTU 1 seq prokMSA_id:001743 AF186413 clone UC37f. 2.13.9.025 OTU 7 seqs prokMSA_id:044004 AF245036 17F9 prokMSA_id:065628 AF507775 soil clone S1186 prokMSA_id:075727 AJ519393 Holophaga sp. clone JG37-AG-149 prokMSA_id:076977 AY150893 Acidobacteriales clone GR14 prokMSA_id:076452 AY150899 Acidobacteriales clone GR13 prokMSA_id:001740 Z95707 clone 11-14. prokMSA_id:016412 Z95714 species clone 32-21 2.13.9.026 OTU 1 seq prokMSA_id:056237 AF507629 soil clone C1138 2.13.9.027 OTU 1 seq prokMSA_id:056132 AF507431 soil clone C0114 2.13.9.028 OTU 1 seq prokMSA_id:024939 AF422593 clone t019 2.13.9.029 OTU 1 seq prokMSA_id:026628 AF423254 soil clone 375-2 2.13.9.030 OTU 1 seq prokMSA_id:027403 AJ297468 delta Sva0501 2.13.9.031 OTU 1 seq prokMSA_id:031589 AF424224 delta MERTZ_2CM_309 2.13.9.032 OTU 2 seqs prokMSA_id:066831 AF368179 Acidobacterium group clone GCP144 prokMSA_id:055946 AF368181 Acidobacterium group clone SBRT166 2.13.9.033 OTU 1 seq prokMSA_id:090000 AY289375 soil clone DS-100 2.13.9.035 OTU 34 seqs prokMSA_id:001771 AF013530 clone C105. prokMSA_id:001776 AF097766 clone 2951. prokMSA_id:001754 AF145809 clone K20-05. prokMSA_id:001768 AF173822 clone LB3-30. prokMSA_id:001767 AF173824 clone LB3-92. prokMSA_id:047841 AF234743 sludge H44 prokMSA_id:051292 AF234751 sludge S6 prokMSA_id:041153 AF312219 Pietermaritzburg Y14-5 prokMSA_id:056714 AF368180 Acidobacterium group clone SBR1013 prokMSA_id:021947 AF445086 clone Tc2 prokMSA_id:074858 AF445106 clone Tc40 prokMSA_id:065921 AF507396 soil clone C0118 prokMSA_id:055652 AF507452 soil clone C079 prokMSA_id:065633 AF507764 soil clone S1152 prokMSA_id:017373 AJ252695 Rhizosphere soil clone RSC-II-79 prokMSA_id:033781 AJ252696 Rhizosphere soil clone RSC-II-80 prokMSA_id:029575 AY037688 earthworm cast clone C034 prokMSA_id:066557 AY094624 clone SM1H07 prokMSA_id:066474 AY100616 clone cvf74006 prokMSA_id:075650 AY154482 earthworm intestine clone wi14 prokMSA_id:081698 AY211077 Acidobacteria clone VC47 prokMSA_id:082959 AY217488 Acidobacteria clone WCB46 prokMSA_id:084054 AY242656 soil clone Tc131-44 prokMSA_id:083032 AY242657 soil clone Tc129-5 prokMSA_id:085787 AY242659 soil clone Tc119-H01 prokMSA_id:084856 AY242660 soil clone TcA5 prokMSA_id:085013 AY242661 soil clone Tc129-6 prokMSA_id:085395 AY242662 soil clone Tc129-9 prokMSA_id:082768 AY242663 soil clone Tc131-46 prokMSA_id:084070 AY242664 soil clone Tc132-51 prokMSA_id:087236 AY268235 clone D5 small subunit prokMSA_id:088737 AY289362 soil clone DS-249 prokMSA_id:086817 AY293402 clone SM1H07 prokMSA_id:001749 Z95709 clone 11-25. 2.13.9.036 OTU 1 seq prokMSA_id:056042 AF507742 soil clone S174 2.13.9.037 OTU 1 seq prokMSA_id:045035 AJ301571 GR-296.II.45 2.13.9.038 OTU 2 seqs prokMSA_id:065796 AF507541 soil clone S0180 prokMSA_id:065611 AF507791 soil clone S1232 2.13.9.041 OTU 1 seq prokMSA_id:065657 AF507736 soil clone S167 2.13.9.042 OTU 1 seq prokMSA_id:065707 AF507674 soil clone C1204 2.13.9.043 OTU 1 seq prokMSA_id:065793 AF507543 soil clone S0188 2.13.9.045 OTU 1 seq prokMSA_id:065886 AF507440 soil clone C0191 2.13.9.046 OTU 1 seq prokMSA_id:065907 AF507414 soil clone C094 2.13.9.048 OTU 32 seqs prokMSA_id:001784 AF013526 unnamed organism. prokMSA_id:001783 AF013550 clone S023. prokMSA_id:001791 AF013554 clone S027. prokMSA_id:001786 AF013566 unnamed organism. prokMSA_id:065938 AF507375 soil clone C069 prokMSA_id:065935 AF507377 soil clone C0194 prokMSA_id:056557 AF507380 soil clone C0124 prokMSA_id:055791 AF507382 soil clone C048 prokMSA_id:065932 AF507384 soil clone C0113 prokMSA_id:065931 AF507385 soil clone C035 prokMSA_id:065922 AF507395 soil clone C0106 prokMSA_id:065920 AF507397 soil clone C0116 prokMSA_id:065918 AF507399 soil clone C0222 prokMSA_id:065915 AF507402 soil clone C0182 prokMSA_id:065872 AF507456 soil clone C073 prokMSA_id:065842 AF507487 soil clone S078 prokMSA_id:065834 AF507497 soil clone S0113 prokMSA_id:065829 AF507503 soil clone S0124 prokMSA_id:065819 AF507513 soil clone S0146 prokMSA_id:065816 AF507516 soil clone S0150 prokMSA_id:065809 AF507524 soil clone S094 prokMSA_id:056442 AF507643 soil clone C1200 prokMSA_id:065717 AF507665 soil clone C1149 prokMSA_id:065643 AF507752 soil clone S1112 prokMSA_id:088556 AH012920 Acidobacteria clone 46h5 genomic prokMSA_id:036401 AJ252643 Agricultural soil clone SC-I-59 prokMSA_id:042952 AJ252665 Agricultural soil clone SC-I-90 prokMSA_id:018071 AJ252703 Rhizosphere soil clone RSC-II-95 prokMSA_id:078630 AY177759 Acidobacteria isolate OF23 prokMSA_id:088963 AY281355 Acidobacteria clone 39p18 genomic prokMSA_id:088111 AY281358 Acidobacteria clone 46h5 genomic prokMSA_id:016287 Z95730 species clone iii3-16 2.13.9.049 OTU 1 seq prokMSA_id:076179 AY154514 earthworm intestine clone ew37 2.13.9.050 OTU 1 seq prokMSA_id:078424 AY177760 Acidobacteria isolate 5g10 2.13.9.051 OTU 2 seqs prokMSA_id:078633 AJ536874 Holophaga sp. clone JG30a-KF-86 prokMSA_id:080673 AY192222 Acidobacteria clone P3-2A 2.13.9.052 OTU 1 seq prokMSA_id:079432 AY187358 clone csbio160183 2.13.9.053 OTU 1 seq prokMSA_id:079557 AY187359 clone csbio160266 2.13.9.054 OTU 1 seq prokMSA_id:080147 AY192202 Acidobacteria clone W1-6A 2.13.9.055 OTU 8 seqs prokMSA_id:080203 AY192197 Acidobacteria clone W1-1A prokMSA_id:087282 AY268302 clone F2 small subunit prokMSA_id:087945 AY268318 clone C10 small subunit prokMSA_id:087895 AY268337 clone D11 small subunit prokMSA_id:084235 AY274121 clone D111 prokMSA_id:084983 AY274122 clone D112 prokMSA_id:085850 AY274130 clone D121 prokMSA_id:084591 AY274144 clone D138 2.13.9.056 OTU 1 seq prokMSA_id:083178 AY244959 rumen clone BS5 2.13.9.057 OTU 1 seq prokMSA_id:084037 AY214845 Acidobacteria clone BB-2-B4F 2.13.9.058 OTU 1 seq prokMSA_id:084875 AY214840 Acidobacteria clone BB-2-C9F 2.13.9.059 OTU 1 seq prokMSA_id:086097 AY250867 clone FBP241 2.13.9.060 OTU 1 seq prokMSA_id:088974 AJ567598 delta clone MBAE48 2.13.9.061 OTU 1 seq prokMSA_id:089514 AY289398 soil clone ABS-21 2.13.9.999 poor quality 219 seqs prokMSA_id:023675 AB010629 clone ASB032 prokMSA_id:075489 AB075101 clone:KSS16 prokMSA_id:038832 AB075780 prokMSA_id:001751 AF010008 unnamed organism. prokMSA_id:001752 AF010014 unnamed organism. prokMSA_id:001741 AF010015 unnamed organism. prokMSA_id:001780 AF010036 unnamed organism. prokMSA_id:023508 AF010072 prokMSA_id:040312 AF010078 prokMSA_id:001748 AF010093 unnamed organism. prokMSA_id:001744 AF010100 unnamed organism. prokMSA_id:001765 AF010101 unnamed organism. prokMSA_id:001775 AF078181 unnamed organism. prokMSA_id:001774 AF078204 unnamed organism. prokMSA_id:001753 AF078275 unnamed organism. prokMSA_id:001787 AF078421 unnamed organism. prokMSA_id:001773 AF090547 clone BHA9. prokMSA_id:001777 AF097767 clone 29510. prokMSA_id:001758 AF097769 clone 29512. prokMSA_id:001759 AF097771 clone 29514. prokMSA_id:001760 AF097772 clone 29510. prokMSA_id:001761 AF097774 clone 29518. prokMSA_id:001778 AF097775 clone 2952. prokMSA_id:001779 AF097777 clone 29521. prokMSA_id:001762 AF097779 clone 29523. prokMSA_id:070141 AF097780 clone 29524 prokMSA_id:037538 AF097781 clone 29525 prokMSA_id:001763 AF097782 clone 2953. prokMSA_id:073028 AF097783 clone 2955 prokMSA_id:001764 AF097785 clone 2958. prokMSA_id:018418 AF103810 soil C4 prokMSA_id:001757 AF128640 clone C078. prokMSA_id:001796 AF128669 clone C0215. prokMSA_id:050429 AF128672 soil S011 prokMSA_id:001795 AF128681 clone S018. prokMSA_id:001756 AF128685 clone S048. prokMSA_id:038373 AF128686 soil S054 prokMSA_id:001789 AF128693 clone S089. prokMSA_id:034667 AF128726 soil C050 prokMSA_id:001788 AF128727 clone C053. prokMSA_id:001755 AF128737 clone C003. prokMSA_id:028713 AF128743 soil C0109 prokMSA_id:050287 AF186427 sponge symbiont PAUC25 prokMSA_id:035843 AF186434 sponge symbiont PAUC44 prokMSA_id:034038 AF186435 sponge symbiont PAUC47 prokMSA_id:044026 AF186437 sponge symbiont PAUC52 prokMSA_id:037897 AF234048 #0319-23K14 prokMSA_id:021358 AF234062 #0319-2I14 prokMSA_id:031779 AF234107 #0319-8B9 prokMSA_id:050411 AF234109 #0319-8E7 prokMSA_id:042183 AF240150 TSA-5.4 prokMSA_id:050651 AF245330 SA15 prokMSA_id:040733 AF314461 PHOS-HE75 prokMSA_id:018275 AF314462 PHOS-HE37 prokMSA_id:036273 AF314463 PHOS-HC46 prokMSA_id:051613 AF314464 PHOS-HC41 prokMSA_id:023729 AF314465 PHOS-HC12 prokMSA_id:045266 AF314466 PHOS-HC16 prokMSA_id:044170 AF332276 clone C12-14 prokMSA_id:024996 AF332329 clone C26-20 prokMSA_id:022726 AF337822 copper smeltery D53 prokMSA_id:042723 AF337828 copper smeltery D60 prokMSA_id:043606 AF337829 copper smeltery D88 prokMSA_id:017916 AF337834 copper smeltery D66 prokMSA_id:042556 AF337835 copper smeltery D90 prokMSA_id:043599 AF337836 copper smeltery D68 prokMSA_id:042195 AF337839 copper smeltery D92 prokMSA_id:041109 AF337841 copper smeltery D93 prokMSA_id:030265 AF337844 copper smeltery D95 prokMSA_id:040570 AF337848 copper smeltery D75 prokMSA_id:041598 AF337849 copper smeltery D98 prokMSA_id:025050 AF337853 copper smeltery D102 prokMSA_id:020621 AF337855 copper smeltery D105 prokMSA_id:051656 AF337856 copper smeltery D106 prokMSA_id:037743 AF337859 copper smeltery D109 prokMSA_id:056070 AF365466 clone BM89MF1BD8 prokMSA_id:068176 AF365556 clone BT49MF4BC11 prokMSA_id:056698 AF368176 Acidobacterium group clone CH3 prokMSA_id:066826 AF368177 Acidobacterium group clone GCP101 prokMSA_id:066827 AF368178 Acidobacterium group clone GCP70 prokMSA_id:017224 AF388354 clone Ac62 prokMSA_id:041529 AF390960 clone TFBMG11 prokMSA_id:017657 AF392719 clone TCE2 prokMSA_id:043986 AF392720 clone P2A4 prokMSA_id:021679 AF392721 clone CRE4 prokMSA_id:020519 AF392722 clone CRG9 prokMSA_id:023063 AF392723 clone CBH1 prokMSA_id:051293 AF392724 clone CBD4 prokMSA_id:022076 AF392725 clone CBD11 prokMSA_id:052695 AF392727 clone CDA5 prokMSA_id:038670 AF392728 clone CDC3 prokMSA_id:050859 AF392729 clone CDF5 prokMSA_id:032620 AF392730 clone CDH4 prokMSA_id:027030 AF392731 clone CEB7 prokMSA_id:051073 AF392732 clone CEH2 prokMSA_id:032135 AF392733 clone LAA3 prokMSA_id:021720 AF392734 clone LBB6 prokMSA_id:045560 AF392735 clone LEE2 prokMSA_id:075162 AF431409 Acidobacterium group clone N11.137WL prokMSA_id:077205 AF431410 Acidobacterium group clone N11.140WL prokMSA_id:074936 AF431419 Acidobacterium group clone C16.39WL prokMSA_id:075931 AF431423 Acidobacterium group clone C17.09WL prokMSA_id:076435 AF431425 Acidobacterium group clone C17.24WL prokMSA_id:075866 AF431431 Acidobacterium group clone S22.33WL prokMSA_id:076072 AF431450 Acidobacterium group clone C32.14SM prokMSA_id:075556 AF431452 Acidobacterium group clone C32.38SM prokMSA_id:076951 AF431462 Acidobacterium group clone S37.01SM prokMSA_id:076158 AF431481 Acidobacterium group clone C46.15PG prokMSA_id:049897 AF445114 clone Tc50 prokMSA_id:029352 AF446331 FL13A10 prokMSA_id:067517 AF493860 clone 21 prokMSA_id:065936 AF507376 soil clone C0126 prokMSA_id:056396 AF507437 soil clone C0223 prokMSA_id:065885 AF507438 soil clone C071 prokMSA_id:065883 AF507442 soil clone C0217 prokMSA_id:065880 AF507445 soil clone C0220 prokMSA_id:065871 AF507454 soil clone C0216 prokMSA_id:065868 AF507460 soil clone S0101 prokMSA_id:065866 AF507463 soil clone S0112 prokMSA_id:055709 AF507466 soil clone S045 prokMSA_id:056049 AF507488 soil clone S053 prokMSA_id:065837 AF507492 soil clone S091 prokMSA_id:065827 AF507499 soil clone S0115 prokMSA_id:065825 AF507507 soil clone S0138 prokMSA_id:065814 AF507518 soil clone S0157 prokMSA_id:065805 AF507525 soil clone S099 prokMSA_id:065807 AF507527 soil clone S0120 prokMSA_id:065786 AF507552 soil clone S0231 prokMSA_id:055798 AF507586 soil clone C131 prokMSA_id:065784 AF507589 soil clone C136 prokMSA_id:065781 AF507592 soil clone C141 prokMSA_id:065770 AF507605 soil clone C176 prokMSA_id:065767 AF507608 soil clone C179 prokMSA_id:055244 AF507611 soil clone C185 prokMSA_id:065755 AF507624 soil clone C1116 prokMSA_id:065730 AF507654 soil clone C1240 prokMSA_id:065626 AF507772 soil clone S1179 prokMSA_id:065612 AF507789 soil clone S1222 prokMSA_id:058794 AF540053 DGGE gel band ESR BR 18 prokMSA_id:037224 AJ225365 species ; clone 7 prokMSA_id:001746 AJ232819 clone LBS8. prokMSA_id:020990 AJ232843 clone LRS11 prokMSA_id:029310 AJ244312 Riz101 prokMSA_id:051700 AJ244333 Riz1036 prokMSA_id:001766 AJ244334 clone Riz1039. prokMSA_id:040516 AJ244339 Riz1049 prokMSA_id:001790 AJ244340 clone Riz1051. prokMSA_id:034015 AJ244345 Riz1069 prokMSA_id:030510 AJ244346 Riz1070 prokMSA_id:051611 AJ244347 Riz1071 prokMSA_id:016482 AJ252679 Rhizosphere soil clone RSC-II-27 prokMSA_id:074436 AJ296624 GR-296.II.2 clone GR-296.II.2 prokMSA_id:072313 AJ421095 clone C9-K29 prokMSA_id:017648 AJ421096 clone C9-K32 prokMSA_id:019599 AJ421102 clone C10-K15 prokMSA_id:018638 AJ421106 clone C10-K34 prokMSA_id:044726 AJ421117 clone C11-K25 prokMSA_id:050902 AJ421180 clone C1-K2 prokMSA_id:018660 AJ421193 clone C1-K41 prokMSA_id:045415 AJ421203 clone C3-K13 prokMSA_id:039335 AJ421205 clone C3-K26 prokMSA_id:057181 AJ518333 clone Neu2P1-78 prokMSA_id:070668 AJ518342 clone Neu2P2-78 prokMSA_id:057166 AJ518361 clone Neu4P1-2 prokMSA_id:080200 AJ538052 Acidobacterium sp. clone OF2 prokMSA_id:046049 AY037558 soil clone S004 prokMSA_id:032877 AY037610 soil clone S087 prokMSA_id:042122 AY037611 soil clone S088 prokMSA_id:020367 AY037612 soil clone S089 prokMSA_id:024488 AY037622 soil clone S105 prokMSA_id:037681 AY037636 soil clone S126 prokMSA_id:061411 AY043826 Acidobacterium group clone SMW4.103WL prokMSA_id:061402 AY043835 Acidobacterium group clone NMS8.148WL prokMSA_id:065541 AY095431 yard-trimming-compost clone S-69 prokMSA_id:065448 AY102338 clone a13152 prokMSA_id:071564 AY143749 soil clone Lur1 prokMSA_id:080995 AY192208 Acidobacteria clone W3-3A prokMSA_id:080554 AY192214 Acidobacteria clone P1-7E prokMSA_id:080834 AY192224 Acidobacteria clone P3-2D prokMSA_id:080230 AY192232 Acidobacteria clone S1a-12C prokMSA_id:080979 AY192239 Acidobacteria clone S2-11D prokMSA_id:080224 AY192241 Acidobacteria clone S3-4E prokMSA_id:080981 AY193006 Acidobacteria clone DB6 prokMSA_id:084600 AY214786 Acidobacteria clone BB-1-B1 prokMSA_id:083480 AY214798 Acidobacteria clone BB-2-H5 prokMSA_id:083702 AY214800 Acidobacteria clone BB-2-D7R prokMSA_id:085269 AY214876 Acidobacteria clone SL2-8H prokMSA_id:083706 AY217489 Acidobacteria clone WCB123 prokMSA_id:086689 AY242658 soil clone Tc121-C05 prokMSA_id:087892 AY268291 clone B8 small subunit prokMSA_id:088943 AY289364 soil clone ABS-766 prokMSA_id:088819 AY289365 soil clone ABS-385 prokMSA_id:090387 AY304028 soil clone Dpcom67 prokMSA_id:093633 AY364037 clone cRI8c prokMSA_id:093421 AY364048 clone cRI37c prokMSA_id:093666 AY364052 clone cRI56c prokMSA_id:094062 AY364065 clone cRI27d prokMSA_id:093612 AY364073 clone cRI41d prokMSA_id:093265 AY364074 clone cRI43d prokMSA_id:094109 AY364075 clone cRI45d prokMSA_id:093593 AY364078 clone cRI48d prokMSA_id:094411 AY369162 clone T-OTU6 prokMSA_id:098414 AY391650 soil clone M34 prokMSA_id:096933 AY391674 soil clone M58 prokMSA_id:098716 AY391696 soil clone M80 prokMSA_id:095879 AY391700 soil clone M84 prokMSA_id:097402 AY391708 soil clone M92 prokMSA_id:098452 AY395190 clone J03K prokMSA_id:098506 AY395212 clone N10K prokMSA_id:096664 AY395216 clone O06R prokMSA_id:001742 U62832 clone RB08. prokMSA_id:001770 U68646 clone P12. prokMSA_id:001801 X84451 str. SBR1003. prokMSA_id:001781 X84458 unnamed organism. prokMSA_id:001782 X84510 unnamed organism. prokMSA_id:001803 X84575 str. SBR2036. prokMSA_id:001799 X84613 str. SBR2083. prokMSA_id:001802 X84614 str. SBR2084. prokMSA_id:001800 X84629 str. SBR2100. 2.13.10 STR.SBR2099 4 seqs 2.13.10.999 poor quality 4 seqs prokMSA_id:068696 AF485342 clone CCU21 prokMSA_id:068694 AF485787 clone BCTP13 prokMSA_id:056948 AJ518631 clone Sai1P1-52 prokMSA_id:001804 X84628 str. SBR2099. 2.13.11 ENVIRONMENTAL_CLONE_MB1228_GROUP 214 seqs 2.13.11.001 OTU 1 seq prokMSA_id:001821 AF013514 unnamed organism. 2.13.11.003 OTU 1 seq prokMSA_id:001819 AF154083 clone BPC102. 2.13.11.006 OTU 1 seq prokMSA_id:001817 AF050547 clone WCHA1-56. 2.13.11.007 OTU 1 seq prokMSA_id:001816 AF173819 clone LB3-147. 2.13.11.009 OTU 1 seq prokMSA_id:001814 AF154095 clone BPC066. 2.13.11.010 OTU 1 seq prokMSA_id:001813 AF154085 clone BPC015. 2.13.11.011 OTU 1 seq prokMSA_id:001810 AF013519 unnamed organism. 2.13.11.012 OTU 1 seq prokMSA_id:001809 AB009195 clone RFN4. 2.13.11.016 OTU 1 seq prokMSA_id:059729 AY133466 clone BB2_223 2.13.11.020 OTU 1 seq prokMSA_id:056205 AF507551 soil clone S0227 2.13.11.023 OTU 1 seq prokMSA_id:028670 AF234701 sludge A22 2.13.11.024 OTU 2 seqs prokMSA_id:031800 Z95728 species clone iii1-15 prokMSA_id:035478 Z95737 species clone mb3429 2.13.11.025 OTU 2 seqs prokMSA_id:032598 AJ390450 soil PBS-III-9 prokMSA_id:036561 AJ390456 soil PBS-III-27 2.13.11.028 OTU 1 seq prokMSA_id:041771 AF424372 green sulfur MERTZ_21CM_208 2.13.11.030 OTU 18 seqs prokMSA_id:017129 AF234695 sludge H3 prokMSA_id:045334 AF234731 sludge A34 prokMSA_id:071241 AF280856 mle1-25 prokMSA_id:020725 AF423235 soil clone 192-2 prokMSA_id:046235 AF423279 soil clone 576-2 prokMSA_id:065939 AF507374 soil clone C0176 prokMSA_id:065873 AF507455 soil clone C090 prokMSA_id:065706 AF507675 soil clone C1205 prokMSA_id:065672 AF507719 soil clone S123 prokMSA_id:065642 AF507753 soil clone S1117 prokMSA_id:001806 AJ001424 clone 400-138. prokMSA_id:048506 AJ252613 Agricultural soil clone SC-I-9 prokMSA_id:079166 AY187360 clone csbio160274 prokMSA_id:088422 AY281353 Acidobacteria clone 32d1 genomic prokMSA_id:001808 Z95726 clone ii3-36. prokMSA_id:018226 Z95731 species clone iii3-7 prokMSA_id:001815 Z95733 clone mb1228. prokMSA_id:017667 Z95734 species clone mb2424 2.13.11.035 OTU 1 seq prokMSA_id:049589 AF424456 MERTZ_0CM_56 2.13.11.036 OTU 1 seq prokMSA_id:053652 AF323775 clone BA059 complete 2.13.11.038 OTU 35 seqs prokMSA_id:031762 AF145833 Metal-contaminated soil clone K20-36 prokMSA_id:049159 AF423257 soil clone 384-2 prokMSA_id:065933 AF507383 soil clone C0228 prokMSA_id:065896 AF507426 soil clone C056 prokMSA_id:065840 AF507493 soil clone S0102 prokMSA_id:065800 AF507534 soil clone S0156 prokMSA_id:065738 AF507642 soil clone C1199 prokMSA_id:065648 AF507745 soil clone S182 prokMSA_id:065635 AF507761 soil clone S1148 prokMSA_id:065615 AF507785 soil clone S1217 prokMSA_id:074543 AJ252616 Agricultural soil clone SC-I-13 prokMSA_id:040242 AJ252624 Agricultural soil clone SC-I-21 prokMSA_id:043082 AJ252654 Agricultural soil clone SC-I-76 prokMSA_id:028281 AJ252657 Agricultural soil clone SC-I-79 prokMSA_id:023632 AJ252662 Agricultural soil clone SC-I-86 prokMSA_id:075999 AJ532719 clone JG34-KF-113 prokMSA_id:076897 AJ532722 clone JG34-KF-257 prokMSA_id:076022 AJ532723 clone JG34-KF-337 prokMSA_id:075545 AJ534635 Acidobacterium group clone JG36-TzT-99 prokMSA_id:078582 AJ536875 Holophaga sp. clone JG30a-KF-145 prokMSA_id:079983 AJ538059 Acidobacterium sp. clone OF47 prokMSA_id:093865 AJ581608 Acidobacterium sp. clone KCM-B-77 prokMSA_id:093333 AJ582048 Acidobacteria clone JG36-GS-72 prokMSA_id:076940 AY150900 Acidobacteriales clone GR20 prokMSA_id:084476 AY214629 Acidobacteria clone SL2-1-E3 prokMSA_id:083882 AY214729 Acidobacteria clone SL2-2-E9F prokMSA_id:084467 AY214825 Acidobacteria clone BB-2-F11F prokMSA_id:085613 AY214897 Acidobacteria clone BAC-49G11 prokMSA_id:085443 AY221047 clone CCM15a prokMSA_id:089318 AY281356 Acidobacteria clone 41b15 genomic prokMSA_id:088876 AY289378 soil clone DS-231 prokMSA_id:001807 Y12597 clone DA008. prokMSA_id:001820 Z95716 clone RB126. prokMSA_id:001818 Z95719 clone RB27. prokMSA_id:048016 Z95736 species clone mb2431 2.13.11.039 OTU 1 seq prokMSA_id:074821 AF507762 soil clone S1150 2.13.11.040 OTU 1 seq prokMSA_id:080248 AY192282 candidate division SPAM clone P2-8G 2.13.11.041 OTU 1 seq prokMSA_id:080372 AJ538049 Acidobacterium sp. clone CF7 2.13.11.042 OTU 1 seq prokMSA_id:084221 AY221071 clone CCM8b 2.13.11.043 OTU 1 seq prokMSA_id:084610 AY221061 clone CCM3a 2.13.11.044 OTU 1 seq prokMSA_id:084930 AY214905 Acidobacteria clone BAC-85E8 2.13.11.045 OTU 1 seq prokMSA_id:085283 AY214654 Acidobacteria clone SL2-1-B6 2.13.11.046 OTU 2 seqs prokMSA_id:089192 AJ567554 delta clone MBMPE40 prokMSA_id:090680 AJ567565 delta clone MBMPE53 2.13.11.047 OTU 2 seqs prokMSA_id:093615 AJ581610 Acidobacterium sp. clone KCM-B-101 prokMSA_id:089236 AY289384 soil clone DS-151 2.13.11.048 OTU 1 seq prokMSA_id:090172 AY281354 Acidobacteria clone 38c7 genomic 2.13.11.049 OTU 1 seq prokMSA_id:093838 AJ581609 Acidobacteriaceae clone KCM-B-14 2.13.11.050 OTU 1 seq prokMSA_id:094157 AJ581627 Acidobacterium sp. clone KCM-C-55 2.13.11.051 OTU 1 seq prokMSA_id:095448 AY225640 Acidobacteriaceae clone AT-s2 2.13.11.052 OTU 1 seq prokMSA_id:097685 AY225646 Acidobacteriaceae clone AT-s3-28 2.13.11.053 OTU 1 seq prokMSA_id:098123 AY375118 clone F29 2.13.11.999 poor quality 126 seqs prokMSA_id:030945 AF009991 prokMSA_id:029333 AF010016 prokMSA_id:001805 AF013567 clone S125. prokMSA_id:046543 AF078192 Grassland soil clone saf1_120 prokMSA_id:021293 AF078229 Grassland soil clone saf2_112 prokMSA_id:052204 AF078239 Grassland soil clone saf2_204 prokMSA_id:038485 AF078243 Grassland soil clone saf2_210 prokMSA_id:025459 AF078394 Grassland soil clone sl2_710 prokMSA_id:001812 AF128738 clone C008. prokMSA_id:036501 AF194202 delta n8d prokMSA_id:073199 AF209002 vent ML-6 prokMSA_id:018135 AF298521 Seq4Z1 prokMSA_id:024002 AF332251 clone C12-13 prokMSA_id:029330 AF332309 clone T26-25 prokMSA_id:048888 AF332310 clone T26-24 prokMSA_id:039425 AF332328 clone C26-1 prokMSA_id:046176 AF332348 clone C26-18 prokMSA_id:048827 AF337850 copper smeltery D99 prokMSA_id:068268 AF365451 clone BM89MF1BB4 prokMSA_id:046576 AF379032 clone EV18 prokMSA_id:037780 AF388329 clone Ac42 prokMSA_id:024942 AF388341 clone Ac16 prokMSA_id:027712 AF388345 clone Ac20 prokMSA_id:052773 AF388359 clone Ac37 prokMSA_id:051690 AF392738 clone CBG12 prokMSA_id:039171 AF392739 clone CDF3 prokMSA_id:049012 AF392740 clone LAC1 prokMSA_id:021986 AF392741 clone LAF7 prokMSA_id:019007 AF423264 soil clone 434-2 prokMSA_id:047738 AF428802 clone CR98-5-72 prokMSA_id:042008 AF428912 clone CR98-35-30 prokMSA_id:026521 AF428965 clone CR99-35-07 prokMSA_id:031641 AF429020 clone CR99-35-62 prokMSA_id:041071 AF429034 clone CR99-35-76 prokMSA_id:025114 AF429088 clone CR99-7-54 prokMSA_id:053069 AF429103 clone CR99-7-69 prokMSA_id:074948 AF431438 Acidobacterium group clone N27.45SM prokMSA_id:076554 AF431469 Acidobacterium group clone N41.123PG prokMSA_id:076901 AF431512 Acidobacterium group clone S52.16PG prokMSA_id:023082 AF445109 clone Tc43 prokMSA_id:067128 AF499325 clone JCL4-55 prokMSA_id:067127 AF499326 clone JCL4-94 prokMSA_id:067099 AF499360 clone JCL9-71 prokMSA_id:067081 AF499382 clone JCL1-28 prokMSA_id:067040 AF499428 clone BL-82 prokMSA_id:065830 AF507502 soil clone S0122 prokMSA_id:065808 AF507528 soil clone S0121 prokMSA_id:055387 AF507540 soil clone S0177 prokMSA_id:065733 AF507648 soil clone C1219 prokMSA_id:065625 AF507767 soil clone S1155 prokMSA_id:065597 AF507801 soil clone S1252 prokMSA_id:058792 AF540055 DGGE gel band ESR BR 20 prokMSA_id:058147 AF544067 delta DGGE gel band M5-2 prokMSA_id:052296 AJ006027 clone TBS3 prokMSA_id:048398 AJ006088 clone TBS8 prokMSA_id:044690 AJ232842 clone LRS25 prokMSA_id:023986 AJ244343 Riz1054 prokMSA_id:044554 AJ247100 Bulk20 prokMSA_id:070061 AJ289942 1405-62 prokMSA_id:060163 AJ347051 clone TK81 prokMSA_id:033020 AJ421191 clone C1-K35 prokMSA_id:032500 AJ421192 clone C1-K39 prokMSA_id:025571 AJ421194 clone C1-K42 prokMSA_id:022692 AJ421198 clone C2-K16 prokMSA_id:025737 AJ421901 clone Alt9-K63 prokMSA_id:058355 AJ489400 clone NS05-58 prokMSA_id:058350 AJ489408 clone NS-X18 prokMSA_id:055525 AJ489431 clone NS-C17 prokMSA_id:062515 AJ504617 isolate P2CN80 prokMSA_id:057165 AJ518359 clone Neu4P1-16 prokMSA_id:057033 AJ518513 clone Qui2P2-62 prokMSA_id:056914 AJ518677 clone Sai4P1-44 prokMSA_id:056896 AJ518699 clone Sai4P1-83 prokMSA_id:056883 AJ518717 clone Sai4P3-33 prokMSA_id:094949 AJ582250 clone AC53 prokMSA_id:038544 AY037729 earthworm cast clone C125 prokMSA_id:037930 AY037755 earthworm cast clone C153 prokMSA_id:064961 AY095638 OS3.5K-26 prokMSA_id:079038 AY177758 Acidobacteria isolate OF20 prokMSA_id:079725 AY192201 Acidobacteria clone W1-4E prokMSA_id:080653 AY192206 Acidobacteria clone W2b-8A prokMSA_id:080567 AY192233 Acidobacteria clone S1b-1C prokMSA_id:080676 AY192240 Acidobacteria clone S3-3H prokMSA_id:084005 AY214624 Acidobacteria clone SL2-1-F10 prokMSA_id:083989 AY214664 Acidobacteria clone SL2-1-A6 prokMSA_id:083915 AY214696 Acidobacteria clone SL2-2-B11F prokMSA_id:084544 AY214777 Acidobacteria clone BB-1-C4 prokMSA_id:085474 AY214819 Acidobacteria clone BB-2-C5R prokMSA_id:082948 AY214835 Acidobacteria clone BB-2-D2F prokMSA_id:083823 AY214861 Acidobacteria clone SL2-10A prokMSA_id:082710 AY214863 Acidobacteria clone SL2-12G prokMSA_id:084004 AY214864 Acidobacteria clone SL2-12F prokMSA_id:084147 AY214865 Acidobacteria clone SL2-12E prokMSA_id:082590 AY214870 Acidobacteria clone SL2-4H prokMSA_id:084935 AY214879 Acidobacteria clone SL2-7D prokMSA_id:084141 AY214880 Acidobacteria clone SL2-6G prokMSA_id:086133 AY214881 Acidobacteria clone SL2-6F prokMSA_id:083152 AY214889 Acidobacteria clone SL2-11A prokMSA_id:085014 AY214891 Acidobacteria clone SL2-10E prokMSA_id:084135 AY214893 Acidobacteria clone SL2-10B prokMSA_id:082945 AY221044 clone CCM12b prokMSA_id:083739 AY221062 clone CCM3b prokMSA_id:083362 AY221070 clone CCM8a prokMSA_id:086189 AY242648 soil clone Tc130-27 prokMSA_id:087457 AY283132 planctomycete clone NS-12 prokMSA_id:087720 AY283141 Verrucomicrobia clone NS-27 prokMSA_id:087778 AY283143 low G+C Gram-positive clone NS-45 prokMSA_id:086763 AY283146 actinobacterium clone NS-53 prokMSA_id:090326 AY289376 soil clone DS-40 prokMSA_id:089803 AY289377 soil clone DS-376 prokMSA_id:090633 AY289379 soil clone DS-315 prokMSA_id:088871 AY289392 soil clone ABS-104 prokMSA_id:088059 AY304024 soil clone Dpcom63 prokMSA_id:089251 AY311628 clone YRCB39 prokMSA_id:090184 AY315354 rumen clone JRCK21 prokMSA_id:089134 AY315371 rumen clone JRCK45 prokMSA_id:097048 AY375083 clone B110 prokMSA_id:096479 AY391620 soil clone M4 prokMSA_id:097634 AY391690 soil clone M74 prokMSA_id:097658 AY391704 soil clone M88 prokMSA_id:097404 AY395132 clone D08ST prokMSA_id:096833 AY395188 clone J01K prokMSA_id:001822 D26261 soil from soybean field clone FIE9. prokMSA_id:001823 D26268 soil from soybean field clone FIE18. prokMSA_id:042864 U35600 92R6 from Wisconsin agricultural soil prokMSA_id:001811 X99986 str. from 1200 mbsl of lake Baikal Russia. 2.13.12 ENVIRONMENTAL_CLONE_RB40_GROUP 289 seqs 2.13.12.001 OTU 1 seq prokMSA_id:001859 U68606 clone M19. 2.13.12.002 OTU 2 seqs prokMSA_id:075257 AJ532718 clone JG34-KF-42 prokMSA_id:001857 Z95721 clone RB40. 2.13.12.003 OTU 1 seq prokMSA_id:001856 U68649 clone P16. 2.13.12.005 OTU 1 seq prokMSA_id:001853 U86489 clone pB1-114. 2.13.12.006 OTU 1 seq prokMSA_id:001851 U68684 clone P65. 2.13.12.013 OTU 1 seq prokMSA_id:001835 AF013551 unnamed organism. 2.13.12.022 OTU 2 seqs prokMSA_id:084239 AY214902 Acidobacteria clone BAC-P85-B5 prokMSA_id:018847 Z95727 species clone ii3-7 2.13.12.023 OTU 1 seq prokMSA_id:024102 AF445103 clone Tc36 2.13.12.024 OTU 1 seq prokMSA_id:025121 AF445118 clone Tc54 2.13.12.025 OTU 1 seq prokMSA_id:027378 AF145822 Metal-contaminated soil clone K20-19 2.13.12.028 OTU 1 seq prokMSA_id:030632 AF422606 clone t036 2.13.12.029 OTU 1 seq prokMSA_id:030759 AF313495 NWCu002 2.13.12.030 OTU 1 seq prokMSA_id:039225 AJ390481 soil PRR-11 2.13.12.031 OTU 1 seq prokMSA_id:046967 AF337869 gold mine D15 2.13.12.032 OTU 1 seq prokMSA_id:049683 AF445127 clone Tc67 2.13.12.033 OTU 2 seqs prokMSA_id:075634 AY150871 Acidobacterium group clone glen99_23 prokMSA_id:051476 Z95735 species clone mb2430 2.13.12.038 OTU 1 seq prokMSA_id:065568 AY095395 yard-trimming-compost clone S-24 2.13.12.039 OTU 1 seq prokMSA_id:065711 AF507671 soil clone C1198 2.13.12.040 OTU 1 seq prokMSA_id:065833 AF507500 soil clone S0118 2.13.12.041 OTU 1 seq prokMSA_id:065848 AF507481 soil clone S056 2.13.12.042 OTU 2 seqs prokMSA_id:073082 AF320937 Lake Michigan sediment LMBA20 prokMSA_id:071357 AH010343 Lake Michigan sediment LMBA20 and genes 2.13.12.043 OTU 1 seq prokMSA_id:075044 AJ519379 Holophaga sp. clone JG37-AG-73 2.13.12.044 OTU 1 seq prokMSA_id:075212 AY154574 earthworm cast clone c215 2.13.12.045 OTU 1 seq prokMSA_id:075740 AY154570 earthworm cast clone c206 2.13.12.046 OTU 1 seq prokMSA_id:076566 AJ519367 Holophaga sp. clone JG37-AG-29 2.13.12.049 OTU 1 seq prokMSA_id:077958 AJ535741 Fibrobacteres clone OF20 2.13.12.052 OTU 1 seq prokMSA_id:082974 AY217487 Acidobacteria clone WCB72 2.13.12.053 OTU 1 seq prokMSA_id:082988 AY214662 Acidobacteria clone SL2-1-A9 2.13.12.055 OTU 59 seqs prokMSA_id:064027 AB087349 clone:F52 prokMSA_id:001827 AF013527 clone C028. prokMSA_id:001834 AF013528 unnamed organism. prokMSA_id:001829 AF013529 unnamed organism. prokMSA_id:001828 AF013534 clone C112. prokMSA_id:001842 AF145814 clone K20-11. prokMSA_id:001840 AF145878 clone K20-94. prokMSA_id:028512 AF234142 #0319-7F19 prokMSA_id:037293 AF445107 clone Tc41 prokMSA_id:016330 AF445146 clone Tc88 prokMSA_id:065937 AF507378 soil clone C0204 prokMSA_id:055409 AF507386 soil clone C076 prokMSA_id:065898 AF507425 soil clone C049 prokMSA_id:065794 AF507542 soil clone S0184 prokMSA_id:065708 AF507673 soil clone C1203 prokMSA_id:001832 AJ007654 clone 1405-49. prokMSA_id:040512 AJ252622 Agricultural soil clone SC-I-19 prokMSA_id:052715 AJ252644 Agricultural soil clone SC-I-60 prokMSA_id:075679 AJ519368 Holophaga sp. clone JG37-AG-31 prokMSA_id:075589 AJ519375 Holophaga sp. clone JG37-AG-56 prokMSA_id:076544 AJ519385 Holophaga sp. clone JG37-AG-99 prokMSA_id:075775 AJ519387 Holophaga sp. clone JG37-AG-112 prokMSA_id:077025 AJ519389 Holophaga sp. clone JG37-AG-117 prokMSA_id:077004 AJ519392 Holophaga sp. clone JG37-AG-145 prokMSA_id:076925 AJ519666 Holophaga sp. clone GuBH2-AD-16 prokMSA_id:075514 AJ532717 clone JG34-KF-27 prokMSA_id:075652 AJ532720 clone JG34-KF-135 prokMSA_id:076114 AJ534631 clone JG36-TzT-10 prokMSA_id:076119 AJ534636 Acidobacterium group clone JG36-TzT-200 prokMSA_id:076504 AJ534637 Acidobacterium group clone JG36-TzT-202 prokMSA_id:080218 AJ538053 Acidobacterium sp. clone OF26 prokMSA_id:093916 AJ582047 Acidobacteria clone JG36-GS-141 prokMSA_id:065464 AY102321 clone a13114 prokMSA_id:077116 AY150876 Acidobacterium group clone glen99_7 prokMSA_id:076673 AY154510 earthworm intestine clone ew33 prokMSA_id:083088 AY214623 Acidobacteria clone SL2-1-F11 prokMSA_id:085087 AY214634 Acidobacteria clone SL2-1-D8 prokMSA_id:084707 AY214640 Acidobacteria clone SL2-1-D12 prokMSA_id:085698 AY214650 Acidobacteria clone SL2-1-C10 prokMSA_id:082739 AY214704 Acidobacteria clone SL2-2-G5F prokMSA_id:083703 AY214896 Acidobacteria clone BAC-54E5 prokMSA_id:086653 AY214899 Acidobacteria clone BAC-147G prokMSA_id:083207 AY214904 Acidobacteria clone BAC-14A1 prokMSA_id:083511 AY217490 Acidobacteria clone WCB122 prokMSA_id:089660 AY281352 Acidobacteria clone 23k22 genomic prokMSA_id:089699 AY289380 soil clone ABS-150 prokMSA_id:089580 AY289382 soil clone DS-130 prokMSA_id:090452 AY289385 soil clone DS-87 prokMSA_id:088997 AY289386 soil clone DS-1 prokMSA_id:089144 AY289387 soil clone ABS-165 prokMSA_id:090773 AY289388 soil clone ABS-400 prokMSA_id:088269 AY289400 soil clone DS-38 prokMSA_id:001850 U68654 clone P21. prokMSA_id:001833 Y07586 clone DA023. prokMSA_id:022391 Z95710 species clone 32-10 prokMSA_id:001854 Z95717 clone RB24. prokMSA_id:023209 Z95724 species clone ii3-12 prokMSA_id:052982 Z95725 species clone ii3-15 prokMSA_id:001847 Z95732 clone kb2426. 2.13.12.056 OTU 1 seq prokMSA_id:084260 AY214701 Acidobacteria clone SL2-2-F5F 2.13.12.057 OTU 1 seq prokMSA_id:084472 AY214854 Acidobacteria clone BB-2-B5F 2.13.12.058 OTU 1 seq prokMSA_id:084585 AY274124 clone D114 2.13.12.059 OTU 1 seq prokMSA_id:085397 AY214667 Acidobacteria clone SL2-1-A12 2.13.12.060 OTU 1 seq prokMSA_id:085595 AY221053 clone CCM18b 2.13.12.061 OTU 1 seq prokMSA_id:088072 AY289389 soil clone ABS-318 2.13.12.062 OTU 1 seq prokMSA_id:090253 AY289390 soil clone ABS-407 2.13.12.063 OTU 1 seq prokMSA_id:090674 AY289399 soil clone ABS-10 2.13.12.999 poor quality 190 seqs prokMSA_id:064069 AB087294 clone:CF16 prokMSA_id:034799 AF010003 prokMSA_id:001860 AF010046 unnamed organism. prokMSA_id:001861 AF010053 unnamed organism. prokMSA_id:001830 AF010070 unnamed organism. prokMSA_id:001844 AF010091 unnamed organism. prokMSA_id:001845 AF010106 unnamed organism. prokMSA_id:001846 AF010115 unnamed organism. prokMSA_id:001831 AF010122 unnamed organism. prokMSA_id:016417 AF078215 Grassland soil clone saf1_312 prokMSA_id:001836 AF078262 unnamed organism. prokMSA_id:001837 AF078321 unnamed organism. prokMSA_id:001855 AF078345 unnamed organism. prokMSA_id:001838 AF078390 unnamed organism. prokMSA_id:001843 AF128679 clone S015. prokMSA_id:042342 AF141536 firmicute clone CRE-PA64 prokMSA_id:001841 AF145843 clone K20-48. prokMSA_id:020936 AF145844 Metal-contaminated soil clone K20-49 prokMSA_id:048288 AF186429 sponge symbiont PAUC30 prokMSA_id:032887 AF220538 prokMSA_id:072981 AF320938 Lake Michigan sediment LMBA20 prokMSA_id:070164 AF320949 Lake Michigan sediment LMBA34 prokMSA_id:069940 AF320950 Lake Michigan sediment LMBA34 prokMSA_id:071544 AF320951 Lake Michigan sediment LMBA35 prokMSA_id:022101 AF320952 Lake Michigan sediment LMBA35 prokMSA_id:021945 AF388323 clone Ac14 prokMSA_id:051352 AF388324 clone Ac92 prokMSA_id:032517 AF388325 clone Ac73 prokMSA_id:027350 AF388330 clone Ac43 prokMSA_id:047772 AF388332 clone Ac71 prokMSA_id:036139 AF388336 clone Ac51 prokMSA_id:043861 AF388347 clone Ac66 prokMSA_id:019098 AF388349 clone Ac69 prokMSA_id:024816 AF388351 clone Ac87 prokMSA_id:025750 AF388355 clone Ac1 prokMSA_id:031577 AF388356 clone Ac12 prokMSA_id:044583 AF392736 clone CRA3 prokMSA_id:018768 AF392737 clone CBB2 prokMSA_id:040544 AF392742 clone LBD5 prokMSA_id:041167 AF392743 clone LBA6 prokMSA_id:032603 AF429181 clone CR99-24-71 prokMSA_id:077231 AF431420 Acidobacterium group clone C16.42WL prokMSA_id:076908 AF431432 Acidobacterium group clone S22.49WL prokMSA_id:076354 AF431445 Acidobacterium group clone C31.53SM prokMSA_id:075142 AF431459 Acidobacterium group clone S36.20SM prokMSA_id:075912 AF431464 Acidobacterium group clone S37.26SM prokMSA_id:075855 AF431482 Acidobacterium group clone C46.25PG prokMSA_id:076909 AF431486 Acidobacterium group clone C46.57PG prokMSA_id:077107 AF431500 Acidobacterium group clone C47.29PG prokMSA_id:075959 AF431506 Acidobacterium group clone S51.04PG prokMSA_id:075416 AF431517 Acidobacterium group clone S52.54PG prokMSA_id:043068 AF434980 sponge symbiont JAWS30 prokMSA_id:035567 AF434986 sponge symbiont JAWS9 prokMSA_id:067124 AF499327 clone JCL4-118 prokMSA_id:067088 AF499371 clone JCL9-109 prokMSA_id:074846 AF499378 clone JCL1-44 prokMSA_id:065905 AF507416 soil clone C025 prokMSA_id:065821 AF507508 soil clone S0139 prokMSA_id:056259 AF507517 soil clone S0153 prokMSA_id:065779 AF507594 soil clone C146 prokMSA_id:065772 AF507603 soil clone C174 prokMSA_id:065769 AF507606 soil clone C115 prokMSA_id:065760 AF507617 soil clone C199 prokMSA_id:065703 AF507676 soil clone C1210 prokMSA_id:065671 AF507718 soil clone S18 prokMSA_id:065665 AF507728 soil clone S138 prokMSA_id:065634 AF507765 soil clone S150 prokMSA_id:065606 AF507795 soil clone S1240 prokMSA_id:073850 AH010349 Lake Michigan sediment LMBA34 and genes prokMSA_id:041697 AH010350 Lake Michigan sediment LMBA35 and genes prokMSA_id:001839 AJ006028 clone TBS16. prokMSA_id:001858 AJ232825 clone LBS26. prokMSA_id:017957 AJ232841 clone LRS24 prokMSA_id:001852 AJ244311 clone Riz6I. prokMSA_id:045479 AJ244314 Riz104 prokMSA_id:054145 AJ244316 Riz108 prokMSA_id:040776 AJ244320 Riz1016 prokMSA_id:030413 AJ244321 Riz1017 prokMSA_id:019078 AJ244323 Riz1020 prokMSA_id:049252 AJ244328 Riz1029 prokMSA_id:025070 AJ244353 Riz1077 prokMSA_id:027447 AJ247096 Bulk14 prokMSA_id:027165 AJ247101 Bulk23 prokMSA_id:019028 AJ289227 RSD11 prokMSA_id:032404 AJ289229 RSD13 prokMSA_id:038334 AJ289937 1405-22 prokMSA_id:020945 AJ308276 clone F99_14b prokMSA_id:041618 AJ311428 maize rhizosphere c15_68 prokMSA_id:038035 AJ421092 clone C9-K16 prokMSA_id:021296 AJ431283 Holophaga group clone 1_33 prokMSA_id:051998 AJ437405 clone 32_102 prokMSA_id:072597 AJ437451 clone 1_32_308 prokMSA_id:057232 AJ518271 clone Mul2P3-10 prokMSA_id:070922 AJ518288 clone Mul2P3-55 prokMSA_id:057185 AJ518331 clone Neu2P1-73 prokMSA_id:057147 AJ518385 clone Neu4P1-66 prokMSA_id:057122 AJ518411 clone Neu4P2-9 prokMSA_id:057073 AJ518476 clone Qui2P1-28 prokMSA_id:057055 AJ518492 clone Qui2P1-8 prokMSA_id:072943 AJ518503 clone Qui2P2-25 prokMSA_id:056893 AJ518714 clone Sai4P3-26 prokMSA_id:094897 AJ582235 Holophaga sp. clone AC14 prokMSA_id:094499 AJ582236 Holophaga sp. clone AC15 prokMSA_id:094380 AJ582241 clone AC21 prokMSA_id:094893 AJ582254 Acidobacteria clone AC73 prokMSA_id:094444 AJ582265 clone AC117 prokMSA_id:023257 AY037630 soil clone S118 prokMSA_id:029345 AY037733 earthworm cast clone C129 prokMSA_id:061510 AY043706 Acidobacterium group clone NOW2.113WL prokMSA_id:061509 AY043708 Acidobacterium group clone NOW2.54WL prokMSA_id:061507 AY043711 Acidobacterium group clone NOS7.111WL prokMSA_id:061417 AY043822 Acidobacterium group clone NMW3.113WL prokMSA_id:061401 AY043832 Acidobacterium group clone SMW4.88WL prokMSA_id:061396 AY043843 Acidobacterium group clone SMS9.26WL prokMSA_id:055309 AY043845 Acidobacterium group clone SMS9.62WL prokMSA_id:061392 AY043847 Acidobacterium group clone SMS9.67WL prokMSA_id:061391 AY043850 Acidobacterium group clone SMS9.8WL prokMSA_id:069063 AY143748 soil clone Lu2 prokMSA_id:069341 AY143783 soil clone Pr59 prokMSA_id:070135 AY143788 soil clone Vr28 prokMSA_id:071834 AY143793 soil prokMSA_id:076507 AY150918 Acidobacteriales clone WYO1bC prokMSA_id:075348 AY154505 earthworm intestine clone ew26 prokMSA_id:080052 AY192200 Acidobacteria clone W1-4D prokMSA_id:079793 AY192204 Acidobacteria clone W2a-4C prokMSA_id:081002 AY192205 Acidobacteria clone W2b-4A prokMSA_id:079634 AY192211 Acidobacteria clone P1-5A prokMSA_id:080326 AY192212 Acidobacteria clone P1-5C prokMSA_id:080305 AY192213 Acidobacteria clone P1-5E prokMSA_id:080989 AY192215 Acidobacteria clone P2-4F prokMSA_id:080302 AY192218 Acidobacteria clone P2-10H prokMSA_id:080141 AY192219 Acidobacteria clone P2-11F prokMSA_id:079742 AY192220 Acidobacteria clone P2-11G prokMSA_id:080499 AY192229 Acidobacteria clone P3-4H prokMSA_id:080415 AY192230 Acidobacteria clone P3-5A prokMSA_id:079822 AY192234 Acidobacteria clone S2-4H prokMSA_id:080803 AY192236 Acidobacteria clone S2-6B prokMSA_id:080608 AY192237 Acidobacteria clone S2-7B prokMSA_id:084207 AY214601 Acidobacteria clone SL2-1-H9 prokMSA_id:085382 AY214639 Acidobacteria clone SL2-1-D2 prokMSA_id:082711 AY214651 Acidobacteria clone SL2-1-C1 prokMSA_id:083105 AY214685 Acidobacteria clone SL2-2-G11R prokMSA_id:084820 AY214698 Acidobacteria clone SL2-2-C2F prokMSA_id:086438 AY214709 Acidobacteria clone SL2-2-E2F prokMSA_id:085068 AY214714 Acidobacteria clone SL2-2-D5F prokMSA_id:086613 AY214724 Acidobacteria clone SL2-2-B2F prokMSA_id:084643 AY214751 beta clone BB-1-F6 prokMSA_id:085419 AY214759 Acidobacteria clone BB-1-E7 prokMSA_id:085944 AY214783 Acidobacteria clone BB-1-B5 prokMSA_id:082655 AY214871 Acidobacteria clone SL2-4F prokMSA_id:084155 AY214872 Acidobacteria clone SL2-2C prokMSA_id:084109 AY214873 Acidobacteria clone SL2-2B prokMSA_id:084943 AY214875 Acidobacteria clone SL2-9D prokMSA_id:085763 AY214882 Acidobacteria clone SL2-6E prokMSA_id:083622 AY214883 Acidobacteria clone SL2-6D prokMSA_id:085986 AY214884 Acidobacteria clone SL2-6B prokMSA_id:084359 AY214885 Acidobacteria clone SL2-9F prokMSA_id:082580 AY214886 Acidobacteria clone SL2-9E prokMSA_id:085840 AY214888 Acidobacteria clone SL2-11B prokMSA_id:086625 AY214890 Acidobacteria clone SL2-10F prokMSA_id:083681 AY214892 Acidobacteria clone SL2-10D prokMSA_id:083694 AY214894 Acidobacteria clone SL2-1B prokMSA_id:085449 AY214895 Acidobacteria clone BAC-146H prokMSA_id:082546 AY214898 Acidobacteria clone BAC-136G prokMSA_id:083016 AY214901 Acidobacteria clone SL2-P85D prokMSA_id:085054 AY214903 Acidobacteria clone BAC-123H prokMSA_id:081862 AY216731 soil clone 31 prokMSA_id:084440 AY217486 Acidobacteria clone WCB80 prokMSA_id:083025 AY217492 Acidobacteria clone WCB119 prokMSA_id:085865 AY217493 Acidobacteria clone WCB110 prokMSA_id:085142 AY221040 clone CCM10b prokMSA_id:082750 AY221069 clone CCM7b prokMSA_id:083102 AY226304 clone DBBB-6 prokMSA_id:084813 AY242650 soil clone Tc131-38 prokMSA_id:093918 AY364054 clone cRI1a prokMSA_id:093511 AY364064 clone cRI25d prokMSA_id:096226 AY391636 soil clone M20 prokMSA_id:097868 AY391668 soil clone M52 prokMSA_id:097473 AY391676 soil clone M60 prokMSA_id:098426 AY391686 soil clone M70 prokMSA_id:097053 AY395127 clone C24R prokMSA_id:098794 AY395160 clone F05ST prokMSA_id:098438 AY395168 clone F15ST prokMSA_id:095591 AY395196 clone Kolm01 prokMSA_id:001825 D26211 soil from paddy field clone PAD24. prokMSA_id:001826 D26243 soil from paddy field clone PAD56. prokMSA_id:001824 D26258 soil from soybean field clone FIE5. prokMSA_id:001848 U68593 clone M6. prokMSA_id:001849 U68639 clone P1. prokMSA_id:001862 X84616 str. SBR2086. 2.14 FLS.SINUSARABICI_ASSEMBLAGE 31 seqs 2.14.001 OTU 1 seq prokMSA_id:001875 X81319 Chrysiogenes arsenatis str. BAL-1 . 2.14.002 OTU 1 seq prokMSA_id:001873 AF157057 str. Lincoln Park 3. 2.14.003 OTU 9 seqs prokMSA_id:001867 AF059186 str. UNSW2.6liv. prokMSA_id:001868 AF059187 str. HRI1cae. prokMSA_id:001869 AF059188 str. HRI3liv. prokMSA_id:001872 AF157055 str. ASF 457. prokMSA_id:025453 AF371927 clone p-2881-6C5 prokMSA_id:097295 AY387668 Mucispirillum schaedleri strain ABHU I23 prokMSA_id:096944 AY387669 Mucispirillum schaedleri strain HRI I12 prokMSA_id:095638 AY387670 Mucispirillum schaedleri strain HRI I17 prokMSA_id:095739 AY387671 Mucispirillum schaedleri strain UNSW I23 2.14.004 OTU 2 seqs prokMSA_id:025709 AJ299402 Geovibrio agilis prokMSA_id:001866 X95744 Geovibrio ferrireducens str. PAL-1. 2.14.005 OTU 2 seqs prokMSA_id:001864 AF068788 VC2.1 Bac7 complete prokMSA_id:001865 AF068790 VC2.1 Bac9 complete 2.14.006 OTU 2 seqs prokMSA_id:070142 AB086060 Deferribacter desulfuricans prokMSA_id:001863 U75602 Deferribacter thermophilus str. BMA. 2.14.007 OTU 1 seq prokMSA_id:074231 AF220344 Flexistipes sp. vp180 2.14.008 OTU 1 seq prokMSA_id:043329 AF146526 Denitrovibrio acetophilus 2.14.009 OTU 2 seqs prokMSA_id:057551 AJ515881 Deferribacter sp. DR strain DR prokMSA_id:057548 AJ515882 Deferribacter sp. JR strain JR 2.14.999 poor quality 10 seqs prokMSA_id:021764 AB047112 OCG2 prokMSA_id:001870 AF059189 str. UNSWMCS1. prokMSA_id:001871 AF059190 str. UNSWRSp12. prokMSA_id:051395 AF289897 Flexistipes Kmlps3-30 prokMSA_id:027062 AF446258 candidate division OP11 FL06H09 prokMSA_id:058797 AF540051 planctomycete DGGE gel band ESR BR 16 prokMSA_id:069219 AF544941 gamma clone 4-7-5 prokMSA_id:042237 AJ419001 clone kl013 prokMSA_id:024204 AJ419033 clone kl078 prokMSA_id:001874 M59231 Flexistipes sinusarabici str. MAS 10 DSM 4947. 2.15 FLEXIBACTER-CYTOPHAGA-BACTEROIDES 5886 seqs 2.15.1 BACTEROIDES_AND_CYTOPHAGA 4116 seqs 2.15.1.1 ENVIRONMENTAL_CLONE_A23J 1 seq 2.15.1.1.999 poor quality 1 seq prokMSA_id:001876 X91446 clone A23j. 2.15.1.2 BACTEROIDES_GROUP 1995 seqs 2.15.1.2.1 RIK.MICROFUSUS_SUBGROUP 121 seqs 2.15.1.2.1.001 OTU 1 seq prokMSA_id:001887 AF018449 clone JW30. 2.15.1.2.1.002 OTU 1 seq prokMSA_id:001886 AF018443 clone JW12. 2.15.1.2.1.003 OTU 1 seq prokMSA_id:001885 U81676 clone vadinBC27. 2.15.1.2.1.004 OTU 1 seq prokMSA_id:001884 AF050544 clone WCHB1-29. 2.15.1.2.1.005 OTU 1 seq prokMSA_id:001883 AF001760 clone RF28. 2.15.1.2.1.006 OTU 1 seq prokMSA_id:001882 AF001747 clone RF15. 2.15.1.2.1.007 OTU 2 seqs prokMSA_id:001880 AF001701 clone RC9. prokMSA_id:001881 AF001735 clone RF2. 2.15.1.2.1.008 OTU 1 seq prokMSA_id:001878 U81709 clone vadinHA21. 2.15.1.2.1.009 OTU 1 seq prokMSA_id:019478 AB056672 equine intestinal clone:YT14 2.15.1.2.1.010 OTU 1 seq prokMSA_id:020499 AF447125 clone TDC-S5:22 2.15.1.2.1.011 OTU 1 seq prokMSA_id:021213 AF371920 clone p-1628-c5 2.15.1.2.1.012 OTU 1 seq prokMSA_id:021326 AF447140 clone TDC-S1:8 2.15.1.2.1.013 OTU 3 seqs prokMSA_id:074420 AF132279 adhufec73 prokMSA_id:061051 AF530349 clone cadhufec18b08sav prokMSA_id:022459 AJ408963 clone HuCA7 2.15.1.2.1.014 OTU 1 seq prokMSA_id:023709 AY005071 Porphyromonas-like sp. oral clone DA064 2.15.1.2.1.015 OTU 1 seq prokMSA_id:026475 AJ408127 equine intestinal sp. DW02 clone DW02 2.15.1.2.1.016 OTU 2 seqs prokMSA_id:068893 AJ408055 equine intestinal sp. CL20 clone CL20 prokMSA_id:068891 AJ408193 equine intestinal sp. MW06 clone MW06 2.15.1.2.1.017 OTU 1 seq prokMSA_id:028192 AJ249109 SHA-7 2.15.1.2.1.018 OTU 1 seq prokMSA_id:028923 AJ408254 equine intestinal sp. PW08 clone PW08 2.15.1.2.1.019 OTU 1 seq prokMSA_id:031264 AJ408100 equine intestinal sp. DL13 clone DL13 2.15.1.2.1.020 OTU 2 seqs prokMSA_id:061057 AF530340 clone cadhufec17d09sav prokMSA_id:034085 AJ408997 clone HuCB23 2.15.1.2.1.021 OTU 1 seq prokMSA_id:038895 AF371919 clone p-2202-s959-3 2.15.1.2.1.022 OTU 1 seq prokMSA_id:042791 AB056670 equine intestinal clone:YT4 2.15.1.2.1.023 OTU 1 seq prokMSA_id:042845 AF276459 clone RFLP 51E 2.15.1.2.1.024 OTU 1 seq prokMSA_id:043937 AJ408152 equine intestinal sp. ML06 clone ML06 2.15.1.2.1.025 OTU 1 seq prokMSA_id:044298 AF153864 adhufec52.25 2.15.1.2.1.026 OTU 1 seq prokMSA_id:045604 AF371911 clone p-2445-18B5 2.15.1.2.1.027 OTU 1 seq prokMSA_id:055622 AF481207 Bacteroidales oral clone MCE7_120 E3 2.15.1.2.1.028 OTU 1 seq prokMSA_id:052062 AJ408216 equine intestinal sp. PL08 clone PL08 2.15.1.2.1.029 OTU 1 seq prokMSA_id:052441 AF371923 clone p-2158-s959-3 2.15.1.2.1.030 OTU 3 seqs prokMSA_id:066194 AJ488069 clone IA-12 prokMSA_id:066176 AJ488087 clone IIB-27 prokMSA_id:081219 AY217388 LTCE-T2A 9A 2.15.1.2.1.031 OTU 1 seq prokMSA_id:068354 AF481206 Bacteroidales oral clone MCE7_164 E2b 2.15.1.2.1.032 OTU 1 seq prokMSA_id:070027 Y13206 enrichment culture LET-13 clone II 2.15.1.2.1.033 OTU 1 seq prokMSA_id:070719 AJ289171 E1-K10 2.15.1.2.1.034 OTU 1 seq prokMSA_id:075351 AJ534683 bacteroidetes clone S15A-MN74 2.15.1.2.1.035 OTU 1 seq prokMSA_id:077751 AB088921 CFB group clone:Rs-E47 2.15.1.2.1.036 OTU 1 seq prokMSA_id:077794 AB088945 Bacteroidaceae clone:Rs-F73 2.15.1.2.1.037 OTU 1 seq prokMSA_id:077967 AB088925 Bacteroidaceae clone:Rs-D38 2.15.1.2.1.038 OTU 1 seq prokMSA_id:078222 AB088930 CFB group clone:Rs-D44 2.15.1.2.1.039 OTU 1 seq prokMSA_id:078232 AB088944 Bacteroidaceae clone:Rs-E62 2.15.1.2.1.040 OTU 1 seq prokMSA_id:080087 AY188305 clone KD3-5 2.15.1.2.1.041 OTU 1 seq prokMSA_id:080101 AF449765 CFB group clone ML1218M-32 2.15.1.2.1.042 OTU 1 seq prokMSA_id:081439 AB100458 Bacteroidaceae clone: Rs-063 2.15.1.2.1.043 OTU 1 seq prokMSA_id:082719 AB092909 clone:AHU24 2.15.1.2.1.044 OTU 1 seq prokMSA_id:083719 AY244968 rumen clone BS14 2.15.1.2.1.045 OTU 1 seq prokMSA_id:088703 AB113717 clone:OAB30 2.15.1.2.1.046 OTU 1 seq prokMSA_id:088896 AY315228 rumen clone JRCG56 2.15.1.2.1.047 OTU 1 seq prokMSA_id:089322 AB113714 clone:OAB27 2.15.1.2.1.048 OTU 1 seq prokMSA_id:090075 AY315248 rumen clone JRCH44 2.15.1.2.1.049 OTU 1 seq prokMSA_id:090096 AB113688 clone:OAB1 2.15.1.2.1.050 OTU 1 seq prokMSA_id:090426 AY315245 rumen clone JRCH33 2.15.1.2.1.051 OTU 1 seq prokMSA_id:090661 AB113698 clone:OAB11 2.15.1.2.1.052 OTU 1 seq prokMSA_id:092276 AY341819 Bacteroidales genomosp. P1 clone P4PB_6 2.15.1.2.1.053 OTU 1 seq prokMSA_id:094426 AB120838 clone:MC42A11 2.15.1.2.1.054 OTU 1 seq prokMSA_id:094492 AB120839 clone:MC42B11 2.15.1.2.1.055 OTU 1 seq prokMSA_id:094731 AB120837 clone:MC82C09 2.15.1.2.1.056 OTU 1 seq prokMSA_id:095345 AY160844 clone COB P3-11 2.15.1.2.1.057 OTU 1 seq prokMSA_id:095530 AY160853 clone COB P5-29 2.15.1.2.1.058 OTU 1 seq prokMSA_id:097151 AY239412 clone rc2-42 complete 2.15.1.2.1.999 poor quality 56 seqs prokMSA_id:045007 AB028429 oral RP55-21 prokMSA_id:040203 AB056677 equine intestinal clone:YT22 prokMSA_id:058728 AB080845 human intestinal clone:JW1C9 prokMSA_id:058698 AB080886 Bacteroides sp. CJ44 prokMSA_id:058697 AB080887 Bacteroides sp. CJ47 prokMSA_id:073930 AB081544 Oil-Tsu-11 prokMSA_id:037087 AF175663 WJGRT-184 prokMSA_id:026394 AF211209 rumen 637cARRO prokMSA_id:039473 AF376388 ckncm155-F1M.1H3 prokMSA_id:016668 AF376419 ckncm186-F3M.1G9 prokMSA_id:033715 AF390934 clone ICBTA3 prokMSA_id:061081 AF530308 clone cadhufec076h7 prokMSA_id:058803 AF540045 Bacteroidetes DGGE gel band ESR BR 10 prokMSA_id:050751 AJ418059 clone MIB-CB3 prokMSA_id:024349 AJ418946 clone k005 prokMSA_id:020516 AJ418966 clone k048 prokMSA_id:020299 AJ418988 clone k088 prokMSA_id:021889 AJ418995 clone kl006 prokMSA_id:023912 AJ419010 clone kl026 prokMSA_id:049566 AJ419011 clone kl034 prokMSA_id:034841 AJ419012 clone kl035 prokMSA_id:032761 AJ419041 clone kl091 prokMSA_id:017616 AJ419047 clone kl098 prokMSA_id:052743 AJ419048 clone kl100 prokMSA_id:026604 AJ419050 clone kl104 prokMSA_id:027146 AJ419055 clone kl115 prokMSA_id:029950 AJ419069 clone kl162 prokMSA_id:018956 AJ419071 clone kl172 prokMSA_id:032750 AJ419074 clone kl209 prokMSA_id:056872 AJ518724 clone Sai4P3-45 prokMSA_id:019953 AY006672 rumen prokMSA_id:022527 AY006752 rumen prokMSA_id:042026 AY006757 rumen prokMSA_id:037912 AY006761 rumen prokMSA_id:026188 AY006862 rumen prokMSA_id:024231 AY006879 rumen prokMSA_id:059306 AY122351 Bacteroides sp. clone III-10 prokMSA_id:097111 AY160845 clone COB P3-3 prokMSA_id:081694 AY217412 BTCE-T2 3E prokMSA_id:089961 AY311601 clone YRCA02 prokMSA_id:089148 AY311625 clone YRCB35 prokMSA_id:090531 AY311630 clone YRCB41 prokMSA_id:089671 AY311665 clone YRCC44 prokMSA_id:090063 AY311699 clone YRCD39 prokMSA_id:089912 AY311711 clone YRCD55 prokMSA_id:088264 AY311717 clone YRCE04 prokMSA_id:088775 AY311773 clone YRCF14 prokMSA_id:088190 AY311775 clone YRCF18 prokMSA_id:088525 AY311777 clone YRCF20 prokMSA_id:090727 AY315296 rumen clone JRCI62 prokMSA_id:090748 AY315351 rumen clone JRCK17 prokMSA_id:001877 L16497 Bacteroides putredinis str. 1 Ando ATCC 29800 . prokMSA_id:001879 L16498 Rikenella microfusus ATCC 29728 . prokMSA_id:039828 U81757 clone vadinHB56 prokMSA_id:051062 Y12092 strain MR24E prokMSA_id:017091 Z77591 1-700 C41 2.15.1.2.2 ANF.MARITIMUS_SUBGROUP 16 seqs 2.15.1.2.2.001 OTU 1 seq prokMSA_id:040718 AJ229217 from anoxic bulk soil clone BSV73 2.15.1.2.2.002 OTU 1 seq prokMSA_id:064143 AF477878 clone 44-UMH 22% pond 2.15.1.2.2.999 poor quality 14 seqs prokMSA_id:050607 AB010626 clone ASB020 prokMSA_id:027511 AF107334 freshwater LCK-73 prokMSA_id:059456 AF540802 clone dp101 prokMSA_id:059455 AF540803 clone dp11u18 prokMSA_id:084253 AJ495620 CFB group isolate SA-20 prokMSA_id:084882 AJ495631 CFB group isolate SA-32 prokMSA_id:057284 AJ518193 clone Mul2P1-26 prokMSA_id:056915 AJ518679 clone Sai4P1-48 prokMSA_id:065087 AY095729 CFB group NL-121 prokMSA_id:065077 AY095738 CFB group NL-135 prokMSA_id:001888 D26217 soil from paddy field clone PAD30. prokMSA_id:001891 NONE "Anaeroflexus maritimus" str. PL12FS DSM 2831. prokMSA_id:001890 X84478 str. SBR1035. prokMSA_id:001889 X84553 str. SBR2008. 2.15.1.2.3 CY.XYLANOLYTICA 3 seqs 2.15.1.2.3.999 poor quality 3 seqs prokMSA_id:024486 AH001617 Cytophaga xylanolytica 1 of 3 internal sequences prokMSA_id:001892 M80585 Cytophaga xylanolytica str. XM3. prokMSA_id:034092 M80586 Cytophaga xylanolytica second of three internal sequences 2.15.1.2.4 CY.FERMENTANS_SUBGROUP 412 seqs 2.15.1.2.4.001 OTU 1 seq prokMSA_id:001914 AJ240979 Cytophaga Cytophaga Sva1038. 2.15.1.2.4.002 OTU 2 seqs prokMSA_id:001913 AB015260 Cytophaga sp. str. JTB132. prokMSA_id:082140 AY167327 Bacteroidetes ANT9285 2.15.1.2.4.003 OTU 1 seq prokMSA_id:001912 AB015532 Cytophaga sp. str. BD2-2. 2.15.1.2.4.004 OTU 1 seq prokMSA_id:001911 AB015525 Cytophaga sp. str. BD1-16. 2.15.1.2.4.005 OTU 1 seq prokMSA_id:001910 AJ011042 str. R1. 2.15.1.2.4.006 OTU 1 seq prokMSA_id:001909 AJ007873 clone LD21. 2.15.1.2.4.009 OTU 4 seqs prokMSA_id:001905 AF047618 clone SRang1.29. prokMSA_id:051120 AJ229229 from anoxic bulk soil clone BSV85 prokMSA_id:001907 AJ229236 str. PB90-2. prokMSA_id:001908 AJ229237 str. XB45. 2.15.1.2.4.010 OTU 1 seq prokMSA_id:001906 U81712 clone vadinHA17. 2.15.1.2.4.011 OTU 1 seq prokMSA_id:001904 AF142825 clone BURTON-5. 2.15.1.2.4.012 OTU 1 seq prokMSA_id:001903 AF142860 clone BURTON-42. 2.15.1.2.4.013 OTU 1 seq prokMSA_id:001902 AF142901 clone EKHO-19. 2.15.1.2.4.014 OTU 1 seq prokMSA_id:001901 AF154059 clone 1_60. 2.15.1.2.4.015 OTU 5 seqs prokMSA_id:083969 AB092881 clone:ALU39 prokMSA_id:083790 AB092882 clone:ALU40 prokMSA_id:001899 AF050542 clone WCHA2-47. prokMSA_id:082603 AY239577 clone CARB_ER2_11 prokMSA_id:091285 AY340833 clone SR_FBR_E99 2.15.1.2.4.016 OTU 5 seqs prokMSA_id:019144 AB011314 clone: MUG22 prokMSA_id:086503 AB092880 clone:ALU38 prokMSA_id:001900 AF050545 clone WCHB1-69. prokMSA_id:074219 AF323778 clone BA008 complete prokMSA_id:066165 AJ488099 clone IIIB-28 2.15.1.2.4.017 OTU 2 seqs prokMSA_id:001898 AF050541 clone WCHA1-01. prokMSA_id:026565 AF276461 clone RFLP 92E 2.15.1.2.4.018 OTU 1 seq prokMSA_id:001897 AF050540 clone WCHA1-14. 2.15.1.2.4.019 OTU 1 seq prokMSA_id:001896 AF050539 clone WCHB1-53. 2.15.1.2.4.020 OTU 1 seq prokMSA_id:001895 AF121885 clone Phenol-4. 2.15.1.2.4.021 OTU 3 seqs prokMSA_id:029124 AB011315 clone: MUG23 prokMSA_id:041715 AF254391 UASB_TL13 complete prokMSA_id:016567 AJ249101 SHA-25 2.15.1.2.4.022 OTU 1 seq prokMSA_id:016784 AF369713 clone 103 2.15.1.2.4.023 OTU 1 seq prokMSA_id:069791 AY082459 CFB group clone 44a-B1-14 2.15.1.2.4.025 OTU 1 seq prokMSA_id:059562 AY134906 Bacteroidetes sp. oral clone FX069 2.15.1.2.4.026 OTU 2 seqs prokMSA_id:049501 AF351234 CFB group clone 8-1 prokMSA_id:019073 AF414576 clone P3OU-1 2.15.1.2.4.027 OTU 1 seq prokMSA_id:020241 AF195441 Cytophaga kps30 2.15.1.2.4.029 OTU 8 seqs prokMSA_id:042167 AF419690 C1_B008 prokMSA_id:032224 AF424335 CFB group MERTZ_2CM_35 prokMSA_id:020574 AF424357 CFB group MERTZ_0CM_331 prokMSA_id:048262 AF424363 CFB group MERTZ_21CM_3 prokMSA_id:017582 AF424368 CFB group MERTZ_21CM_344 prokMSA_id:077623 AJ535255 clone Hyd89-65 prokMSA_id:059797 AY133394 clone BB2_132 prokMSA_id:059795 AY133395 clone OB3_104 2.15.1.2.4.031 OTU 1 seq prokMSA_id:021341 AY038511 Cytophagales clone CD4B12 2.15.1.2.4.032 OTU 1 seq prokMSA_id:021755 AY038551 Cytophagales clone CD4D9 2.15.1.2.4.033 OTU 1 seq prokMSA_id:022580 AJ408085 equine intestinal sp. CW16 clone CW16 2.15.1.2.4.034 OTU 1 seq prokMSA_id:022789 AF195443 CFB group kpj431f 2.15.1.2.4.035 OTU 1 seq prokMSA_id:024146 AF018479 rumen 12-80 2.15.1.2.4.036 OTU 1 seq prokMSA_id:025642 AF276456 clone RFLP 39E 2.15.1.2.4.037 OTU 1 seq prokMSA_id:026698 AF211291 Cytophagales CE54 2.15.1.2.4.038 OTU 1 seq prokMSA_id:026752 AF424365 CFB group MERTZ_21CM_75 2.15.1.2.4.039 OTU 1 seq prokMSA_id:055597 AY102878 clone BCM1-30B 2.15.1.2.4.040 OTU 1 seq prokMSA_id:027268 AJ249107 SHA-54 2.15.1.2.4.041 OTU 1 seq prokMSA_id:027443 AF224833 clone Car44rc 2.15.1.2.4.042 OTU 1 seq prokMSA_id:027877 AJ290056 FukuN63 2.15.1.2.4.043 OTU 1 seq prokMSA_id:056341 AF507859 Bacteroidetes clone ML635J-40 2.15.1.2.4.044 OTU 1 seq prokMSA_id:031913 AF348708 Cytophaga sp. clone MPD-11 2.15.1.2.4.045 OTU 1 seq prokMSA_id:033956 AJ229182 from anoxic bulk soil clone BSV13 2.15.1.2.4.046 OTU 1 seq prokMSA_id:034437 AF254396 UASB_TL54 complete 2.15.1.2.4.047 OTU 1 seq prokMSA_id:037588 AF424340 CFB group MERTZ_2CM_232 2.15.1.2.4.048 OTU 1 seq prokMSA_id:039460 AF354617 Cytophagales Arctic97A-17 2.15.1.2.4.050 OTU 3 seqs prokMSA_id:040351 AF361198 Cytophagales clone 17 prokMSA_id:021292 AF361199 Cytophagales clone 26 prokMSA_id:048931 AY038769 CFB group clone TAF-B64 2.15.1.2.4.051 OTU 1 seq prokMSA_id:040910 AF323765 clone BA043 complete 2.15.1.2.4.052 OTU 1 seq prokMSA_id:041113 AF424345 CFB group MERTZ_2CM_347 2.15.1.2.4.053 OTU 1 seq prokMSA_id:042489 AF207533 Environmental clone CC-8 2.15.1.2.4.054 OTU 1 seq prokMSA_id:055727 AF507866 Bacteroidetes clone ML617.5J-33 2.15.1.2.4.055 OTU 1 seq prokMSA_id:044257 AJ289174 E1-K9 2.15.1.2.4.056 OTU 1 seq prokMSA_id:055996 AJ441219 CFB group clone P. palm C/A 42 2.15.1.2.4.057 OTU 1 seq prokMSA_id:046205 AF424367 CFB group MERTZ_21CM_238 2.15.1.2.4.058 OTU 11 seqs prokMSA_id:092990 AY354737 Bacteroidetes clone PLY-P2-28 prokMSA_id:092355 AY354740 Bacteroidetes clone PLY-P2-60 prokMSA_id:092886 AY354741 Bacteroidetes clone PLY-P2-64 prokMSA_id:092978 AY354742 Bacteroidetes clone PLY-P2-71 prokMSA_id:092659 AY354748 Bacteroidetes clone PLY-P3-17 prokMSA_id:092739 AY354754 Bacteroidetes clone PLY-P3-55 prokMSA_id:092908 AY354755 Bacteroidetes clone PLY-P3-59 prokMSA_id:092518 AY354758 Bacteroidetes clone PLY-P3-78 prokMSA_id:092580 AY354759 Bacteroidetes clone PLY-P3-79 prokMSA_id:093135 AY354763 Bacteroidetes clone PLY-P3-86 prokMSA_id:048251 U70709 cytophagales OM273 2.15.1.2.4.059 OTU 1 seq prokMSA_id:057463 AJ441221 CFB group clone P. palm C/A 33 2.15.1.2.4.060 OTU 1 seq prokMSA_id:057462 AJ441218 CFB group clone P. palm C/A 221 2.15.1.2.4.061 OTU 1 seq prokMSA_id:057448 AJ441239 CFB group clone P. palm A 53 2.15.1.2.4.062 OTU 1 seq prokMSA_id:049571 AF424341 CFB group MERTZ_2CM_270 2.15.1.2.4.063 OTU 1 seq prokMSA_id:049689 AJ307947 mRNA clone sipK20 2.15.1.2.4.064 OTU 1 seq prokMSA_id:052484 AJ249105 SHA-38 2.15.1.2.4.065 OTU 2 seqs prokMSA_id:083743 AB092908 clone:AHU23 prokMSA_id:053119 AF408644 clone PCEDR463 2.15.1.2.4.066 OTU 1 seq prokMSA_id:055356 AY100536 clone cvf63029 2.15.1.2.4.067 OTU 1 seq prokMSA_id:056432 AJ441240 CFB group clone P. palm A 10 2.15.1.2.4.068 OTU 1 seq prokMSA_id:061842 AF449261 CFB group clone R76-B13 2.15.1.2.4.069 OTU 1 seq prokMSA_id:061849 AF449260 CFB group clone R76-B58 2.15.1.2.4.070 OTU 1 seq prokMSA_id:062390 AF529128 Bacteroidetes clone FTLpost3 2.15.1.2.4.071 OTU 1 seq prokMSA_id:062690 AF507869 Bacteroidetes clone ML635J-15 2.15.1.2.4.072 OTU 5 seqs prokMSA_id:079684 AF449771 CFB group clone ML310M-1 prokMSA_id:079883 AF449781 CFB group clone ML602M-17 prokMSA_id:063865 AF452592 CFB group clone ML110J-35 prokMSA_id:063864 AF452594 CFB group clone ML110J-8 prokMSA_id:062691 AF507868 Bacteroidetes clone ML602J-15 2.15.1.2.4.073 OTU 1 seq prokMSA_id:062696 AF507862 Bacteroidetes clone ML635J-56 2.15.1.2.4.074 OTU 1 seq prokMSA_id:062700 AF507857 Bacteroidetes clone ML635J-8 2.15.1.2.4.076 OTU 1 seq prokMSA_id:066167 AJ488097 clone IIIB-1 2.15.1.2.4.077 OTU 1 seq prokMSA_id:066189 AJ488076 clone IA-5 2.15.1.2.4.078 OTU 1 seq prokMSA_id:066950 AJ306739 clone SHA-107 2.15.1.2.4.079 OTU 1 seq prokMSA_id:067037 AJ306738 clone SHA-94 2.15.1.2.4.080 OTU 1 seq prokMSA_id:070461 AF132281 adhufec84 2.15.1.2.4.081 OTU 1 seq prokMSA_id:070586 AF320926 Lake Michigan sediment LMBA49 2.15.1.2.4.082 OTU 1 seq prokMSA_id:070875 AF275923 AA39 2.15.1.2.4.083 OTU 1 seq prokMSA_id:074963 AY164334 clone ALIB-1 2.15.1.2.4.084 OTU 1 seq prokMSA_id:075260 AJ534686 bacteroidetes clone S15A-MN128 2.15.1.2.4.085 OTU 1 seq prokMSA_id:075310 AY164356 clone ALIB-71 2.15.1.2.4.086 OTU 1 seq prokMSA_id:075392 AJ532698 clone Gitt-KF-184 2.15.1.2.4.087 OTU 1 seq prokMSA_id:075529 AY164359 clone ALIB-86 2.15.1.2.4.088 OTU 1 seq prokMSA_id:075791 AF550591 Bacteroidetes Ko710 2.15.1.2.4.089 OTU 1 seq prokMSA_id:075909 AY164409 clone DLIB-4 2.15.1.2.4.090 OTU 1 seq prokMSA_id:075911 AY164424 clone DLIB-92 2.15.1.2.4.091 OTU 1 seq prokMSA_id:075921 AJ534684 bacteroidetes clone S15A-MN90 2.15.1.2.4.092 OTU 2 seqs prokMSA_id:076135 AY164406 clone DLIB-32 prokMSA_id:084149 AY226300 clone DBBB-5 2.15.1.2.4.093 OTU 1 seq prokMSA_id:076365 AY164425 clone DLIB-93 2.15.1.2.4.094 OTU 1 seq prokMSA_id:076499 AJ534685 bacteroidetes clone S15A-MN91 2.15.1.2.4.095 OTU 1 seq prokMSA_id:076696 AY164422 clone DLIB-86 2.15.1.2.4.096 OTU 1 seq prokMSA_id:077145 AY164342 clone ALIB-27 2.15.1.2.4.097 OTU 1 seq prokMSA_id:077190 AY164441 clone ULIB-58 2.15.1.2.4.098 OTU 2 seqs prokMSA_id:077809 AY172245 clone 217 prokMSA_id:078374 AY172252 clone 2174 2.15.1.2.4.099 OTU 1 seq prokMSA_id:077850 AY172249 clone 2131 2.15.1.2.4.100 OTU 1 seq prokMSA_id:077858 AY171380 clone s45 2.15.1.2.4.101 OTU 1 seq prokMSA_id:078000 AB088919 Bacteroidaceae clone:Rs-P82 2.15.1.2.4.102 OTU 1 seq prokMSA_id:078165 AJ535256 Cytophagales clone Hyd-B2-1 2.15.1.2.4.103 OTU 1 seq prokMSA_id:078293 AY171329 clone s111 2.15.1.2.4.104 OTU 1 seq prokMSA_id:080197 AY188304 clone KD3-17 2.15.1.2.4.105 OTU 1 seq prokMSA_id:080609 AY188302 clone KD3-123 2.15.1.2.4.106 OTU 1 seq prokMSA_id:080683 AY188300 clone KD2-33 2.15.1.2.4.107 OTU 1 seq prokMSA_id:080791 AF449768 CFB group clone ML1228J-9 2.15.1.2.4.108 OTU 1 seq prokMSA_id:081077 AY218604 clone KD3-136 2.15.1.2.4.109 OTU 2 seqs prokMSA_id:081188 AY216439 clone KM67 prokMSA_id:081507 AY216441 clone KM93 2.15.1.2.4.110 OTU 1 seq prokMSA_id:081494 AY218597 clone KD2-88 2.15.1.2.4.111 OTU 1 seq prokMSA_id:081539 AJ548892 organism clone BIOEST-3 2.15.1.2.4.112 OTU 1 seq prokMSA_id:082095 AY218761 clone KD6-47 2.15.1.2.4.113 OTU 1 seq prokMSA_id:082372 AY218551 clone KD1-125 2.15.1.2.4.114 OTU 1 seq prokMSA_id:082620 AY280660 clone G4-23 2.15.1.2.4.116 OTU 19 seqs prokMSA_id:065080 AY095739 CFB group NL-136 prokMSA_id:084408 AY274855 Bacteroidetes clone CF44 prokMSA_id:083660 AY274866 Bacteroidetes clone CF60 prokMSA_id:082792 AY274868 Bacteroidetes clone 1A5 prokMSA_id:092158 AY354713 Bacteroidetes clone PLY-P1-58 prokMSA_id:092895 AY354715 Bacteroidetes clone PLY-P1-63 prokMSA_id:092327 AY354717 Bacteroidetes clone PLY-P1-67 prokMSA_id:092429 AY354719 Bacteroidetes clone PLY-P1-72 prokMSA_id:092971 AY354720 Bacteroidetes clone PLY-P1-73 prokMSA_id:092925 AY354721 Bacteroidetes clone PLY-P1-79 prokMSA_id:093037 AY354722 Bacteroidetes clone PLY-P1-81 prokMSA_id:092975 AY354723 Bacteroidetes clone PLY-P1-82 prokMSA_id:092804 AY354724 Bacteroidetes clone PLY-P1-84 prokMSA_id:092210 AY354725 Bacteroidetes clone PLY-P1-91 prokMSA_id:092438 AY354726 Bacteroidetes clone PLY-P1-93 prokMSA_id:092993 AY354731 Bacteroidetes clone PLY-P1-109 prokMSA_id:092587 AY354732 Bacteroidetes clone PLY-P1-112 prokMSA_id:093006 AY354751 Bacteroidetes clone PLY-P3-28 prokMSA_id:092455 AY354753 Bacteroidetes clone PLY-P3-47 2.15.1.2.4.117 OTU 1 seq prokMSA_id:082805 AY226262 clone BBBB-63 2.15.1.2.4.118 OTU 1 seq prokMSA_id:082999 AB092906 clone:AHU21 2.15.1.2.4.119 OTU 1 seq prokMSA_id:083244 AY226191 clone ABBB-1 2.15.1.2.4.120 OTU 1 seq prokMSA_id:083262 AY208811 Bacteroidetes clone LKC2.127-25 2.15.1.2.4.121 OTU 1 seq prokMSA_id:083278 AY226193 clone ABBB-15 2.15.1.2.4.122 OTU 1 seq prokMSA_id:083352 AY239555 clone CARB_ER1_20 2.15.1.2.4.123 OTU 1 seq prokMSA_id:083355 AY226322 clone DBBB-97 2.15.1.2.4.124 OTU 1 seq prokMSA_id:083369 AY226247 clone BBBB-40 2.15.1.2.4.125 OTU 1 seq prokMSA_id:083857 AB092879 clone:ALU37 2.15.1.2.4.126 OTU 1 seq prokMSA_id:083863 AY226223 clone ABBB-74 2.15.1.2.4.127 OTU 1 seq prokMSA_id:083897 AY197383 clone B01R012 2.15.1.2.4.128 OTU 1 seq prokMSA_id:083911 AY226333 clone UBBB-48 2.15.1.2.4.129 OTU 1 seq prokMSA_id:083965 AJ495649 CFB group isolate SB-2 2.15.1.2.4.130 OTU 1 seq prokMSA_id:084233 AY239576 clone CARB_ER2_14 2.15.1.2.4.131 OTU 1 seq prokMSA_id:084261 AY197403 clone B03R006 2.15.1.2.4.132 OTU 1 seq prokMSA_id:084505 AB092907 clone:AHU22 2.15.1.2.4.133 OTU 1 seq prokMSA_id:084528 AY274131 clone D122 2.15.1.2.4.134 OTU 2 seqs prokMSA_id:086305 AB092883 clone:ALU41 prokMSA_id:084735 AB092905 clone:AHU20 2.15.1.2.4.135 OTU 3 seqs prokMSA_id:084772 AY231303 clone ER1_3 prokMSA_id:085481 AY231307 clone ER1_7 prokMSA_id:086119 AY231315 clone ER1_15 2.15.1.2.4.136 OTU 1 seq prokMSA_id:084800 AY226256 clone BBBB-56 2.15.1.2.4.137 OTU 1 seq prokMSA_id:085078 AY226228 clone ABBB-88 2.15.1.2.4.138 OTU 1 seq prokMSA_id:085197 AY226202 clone ABBB-31 2.15.1.2.4.139 OTU 2 seqs prokMSA_id:086389 AY197390 clone B01R026 prokMSA_id:085513 AY197401 clone B02R020 2.15.1.2.4.140 OTU 1 seq prokMSA_id:085527 AY239540 clone CARB_ESS_9 2.15.1.2.4.141 OTU 1 seq prokMSA_id:085567 AY226200 clone ABBB-23 2.15.1.2.4.142 OTU 1 seq prokMSA_id:085596 AJ495635 CFB group isolate SA-36 2.15.1.2.4.143 OTU 1 seq prokMSA_id:085605 AY231312 clone ER1_12 2.15.1.2.4.144 OTU 1 seq prokMSA_id:085657 AJ495623 CFB group isolate SA-24 2.15.1.2.4.145 OTU 1 seq prokMSA_id:085719 AY226235 clone BBBB-19 2.15.1.2.4.146 OTU 1 seq prokMSA_id:086150 AY228697 clone SSE5 2.15.1.2.4.147 OTU 1 seq prokMSA_id:086436 AY239571 clone CARB_ER2_1 2.15.1.2.4.148 OTU 7 seqs prokMSA_id:086893 AY279036 clone CS053 prokMSA_id:087524 AY279038 clone CS019 prokMSA_id:086790 AY279043 clone CS008 prokMSA_id:087903 AY279050 clone CS005 prokMSA_id:088033 AY279054 clone CS015 prokMSA_id:087420 AY279058 clone CS023 prokMSA_id:087998 AY279064 clone CS034 2.15.1.2.4.149 OTU 1 seq prokMSA_id:086924 AY279051 clone CS009 2.15.1.2.4.150 OTU 1 seq prokMSA_id:088088 AY327208 clone ZB28 2.15.1.2.4.151 OTU 1 seq prokMSA_id:088916 AY327211 clone ZB31 2.15.1.2.4.152 OTU 1 seq prokMSA_id:088996 AY321388 clone K126 2.15.1.2.4.153 OTU 1 seq prokMSA_id:089050 AY297979 clone TA55_Ba_74 2.15.1.2.4.154 OTU 2 seqs prokMSA_id:089650 AY327207 clone ZB27 prokMSA_id:089105 AY327213 clone ZB33 2.15.1.2.4.155 OTU 2 seqs prokMSA_id:090166 AY297967 clone TA55_Ba_8 prokMSA_id:091528 AY340821 clone SR_FBR_E11 2.15.1.2.4.156 OTU 1 seq prokMSA_id:090240 AY327212 clone ZB32 2.15.1.2.4.157 OTU 9 seqs prokMSA_id:093097 AY354783 Bacteroidetes clone PLY-P2-7 prokMSA_id:093035 AY354785 Bacteroidetes clone PLY-P2-35 prokMSA_id:092797 AY354787 Bacteroidetes clone PLY-P2-40 prokMSA_id:093011 AY354788 Bacteroidetes clone PLY-P2-46 prokMSA_id:092517 AY354792 Bacteroidetes clone PLY-P2-61 prokMSA_id:092647 AY354798 Bacteroidetes clone PLY-P2-84 prokMSA_id:092318 AY354799 Bacteroidetes clone PLY-P2-90 prokMSA_id:092416 AY354800 Bacteroidetes clone PLY-P2-94 prokMSA_id:092537 AY354801 Bacteroidetes clone PLY-P2-97 2.15.1.2.4.158 OTU 1 seq prokMSA_id:092453 AY354743 Bacteroidetes clone PLY-P2-76 2.15.1.2.4.159 OTU 1 seq prokMSA_id:092639 AY354776 Bacteroidetes clone PLY-P1-57 2.15.1.2.4.160 OTU 1 seq prokMSA_id:092783 AY354749 Bacteroidetes clone PLY-P3-18 2.15.1.2.4.161 OTU 1 seq prokMSA_id:092893 AY354718 Bacteroidetes clone PLY-P1-70 2.15.1.2.4.162 OTU 3 seqs prokMSA_id:093974 AY329132 Cytophagales clone M3-C10 prokMSA_id:094103 AY329133 Cytophagales clone M3-C2 prokMSA_id:093539 AY329134 Cytophagales clone M3-C6 2.15.1.2.4.163 OTU 1 seq prokMSA_id:093839 AY329148 Cytophagales clone M4-C19 2.15.1.2.4.164 OTU 1 seq prokMSA_id:094600 AJ583189 CFB group clone S15B-MN138 2.15.1.2.4.165 OTU 1 seq prokMSA_id:095582 AY225660 Bacteroidetes clone AT-co1 2.15.1.2.4.999 poor quality 172 seqs prokMSA_id:044626 AB047111 OCG1 prokMSA_id:076316 AB075173 clone:TSS10 prokMSA_id:050067 AF034937 Cytophaga sp. 'Egg clone D49' prokMSA_id:029279 AF141397 Cytophagales clone CR-FL12 prokMSA_id:050451 AF141549 Cytophagales clone CRE-PA82 prokMSA_id:072143 AF208996 vent ML-3a prokMSA_id:069959 AF208997 vent ML-3b prokMSA_id:069939 AF208998 vent ML-3c prokMSA_id:070264 AF209006 vent ML-11 prokMSA_id:043772 AF211289 Cytophaga MT69 prokMSA_id:049914 AF211290 Cytophagales CE22 prokMSA_id:027598 AF231443 Humic substances enrichment clone D47 prokMSA_id:045832 AF277483 SIC.42370 prokMSA_id:027106 AF289906 Cytophagales Kmlps6-8 prokMSA_id:043517 AF289909 Cytophagales Kmlps6-14 prokMSA_id:027383 AF296206 SY6-60 prokMSA_id:030864 AF296212 SY6-76 prokMSA_id:076752 AF344296 Cytophaga sp. DGGE band GL2.1 prokMSA_id:068104 AF365633 clone BM89DS1BbA6 prokMSA_id:068028 AF365722 clone BT60DS4BA1 prokMSA_id:068005 AF365748 clone BT60DS4BE12 prokMSA_id:035593 AF390935 clone ICBAF7 prokMSA_id:022879 AF408649 clone PCEDR92 prokMSA_id:038359 AF428833 clone CR98-24-27 prokMSA_id:038429 AF429004 clone CR99-35-46 prokMSA_id:046763 AF429017 clone CR99-35-59 prokMSA_id:064783 AF434155 CFB/Green sulfur group clone P1-1-10 prokMSA_id:064781 AF434156 CFB/Green sulfur group clone P2-1-18 prokMSA_id:026852 AF441878 Cytophagales clone CD13G10 prokMSA_id:024895 AF441978 CFB group clone CD12G5 prokMSA_id:042432 AF441980 CFB group clone CD12G7 prokMSA_id:028122 AF441986 CFB group clone CD12F1 prokMSA_id:039276 AF442017 CFB group clone CD12H1 prokMSA_id:040720 AF447143 clone TDC-S1:3 prokMSA_id:022685 AF447149 clone TDC-S1:13 prokMSA_id:063858 AF452595 CFB group clone ML110J-9 prokMSA_id:063856 AF452598 CFB group clone ML110M-9 prokMSA_id:044707 AF473912 CFB group 128-1-7 prokMSA_id:040627 AF473917 CFB group 128-22 prokMSA_id:021220 AF473986 CFB group 68-3 prokMSA_id:064177 AF477832 prokaryote isolate DGGE Band 40-UIB 4% pond prokMSA_id:066440 AF497874 CFB group isolate WB8-5 prokMSA_id:067123 AF499328 clone JCL4-122 prokMSA_id:067120 AF499332 clone JCL4-88 prokMSA_id:056631 AF499333 clone JCL4-92 prokMSA_id:067119 AF499334 clone JCL4-124 prokMSA_id:067108 AF499350 clone JCL9-117 prokMSA_id:056324 AF499351 clone JCL9-121 prokMSA_id:067106 AF499352 clone JCL9-124 prokMSA_id:067095 AF499365 clone JCL9-67 prokMSA_id:067093 AF499366 clone JCL9-64 prokMSA_id:067075 AF499387 clone JCL1-31 prokMSA_id:067058 AF499410 clone BL-115 prokMSA_id:067053 AF499411 clone BL-42 prokMSA_id:067057 AF499412 clone BL-111 prokMSA_id:067056 AF499413 clone BL-109 prokMSA_id:067054 AF499414 clone BL-70 prokMSA_id:072278 AF523332 clone P4-1 prokMSA_id:061164 AF530094 isolate MGP DGGE Band 3 prokMSA_id:061150 AF530108 isolate MGP DGGE Band 12E prokMSA_id:056307 AF535204 CFB group clone CD4A2 prokMSA_id:069135 AF540796 clone DP10u21 prokMSA_id:074043 AJ011657 DGGE amplificate BS7 prokMSA_id:048460 AJ011658 DGGE amplificate BS6 prokMSA_id:037669 AJ240007 Cytophagales strain DGGE band VIBAC-1 prokMSA_id:045270 AJ240009 Cytophagales strain DGGE band VIBAC-4 prokMSA_id:017832 AJ287668 CFB-group 61ev prokMSA_id:059247 AJ319835 SB-36-TW prokMSA_id:059246 AJ319836 SB-51-TW prokMSA_id:074611 AJ319846 SB-7/64-AG prokMSA_id:059234 AJ319850 SB-29-AG prokMSA_id:061769 AJ416168 clone Sta0-45 prokMSA_id:018736 AJ419063 clone kl150 prokMSA_id:026965 AJ419076 clone kl221 prokMSA_id:071053 AJ458200 green sulfur prokMSA_id:082505 AJ495626 CFB group isolate SA-27 prokMSA_id:083301 AJ495650 CFB group isolate SB-3 prokMSA_id:082867 AJ495671 CFB group isolate SB-25 prokMSA_id:057402 AJ517869 clone C30.1 prokMSA_id:057262 AJ518213 clone Mul2P1-8 prokMSA_id:057264 AJ518221 clone Mul2P2-11 prokMSA_id:057258 AJ518228 clone Mul2P2-23 prokMSA_id:057254 AJ518238 clone Mul2P2-36 prokMSA_id:057246 AJ518251 clone Mul2P2-55 prokMSA_id:057218 AJ518286 clone Mul2P3-51 prokMSA_id:057199 AJ518310 clone Mul2P3-94 prokMSA_id:057015 AJ518549 clone Qui4P1-62 prokMSA_id:057014 AJ518550 clone Qui4P1-75 prokMSA_id:057003 AJ518564 clone Qui4P1-94 prokMSA_id:056968 AJ518606 clone Qui4P2-77 prokMSA_id:056947 AJ518630 clone Sai1P1-5 prokMSA_id:056938 AJ518651 clone Sai2P2-19 prokMSA_id:056932 AJ518656 clone Sai2P2-27 prokMSA_id:056916 AJ518676 clone Sai4P1-30 prokMSA_id:056911 AJ518681 clone Sai4P1-51 prokMSA_id:056912 AJ518684 clone Sai4P1-61 prokMSA_id:056909 AJ518685 clone Sai4P1-65 prokMSA_id:056907 AJ518687 clone Sai4P1-69 prokMSA_id:056900 AJ518697 clone Sai4P1-8 prokMSA_id:056889 AJ518703 clone Sai4P1-9 prokMSA_id:056890 AJ518706 clone Sai4P1-92 prokMSA_id:056884 AJ518715 clone Sai4P3-29 prokMSA_id:055631 AJ518737 clone Sai4P3-61 prokMSA_id:096077 AX798320 93 from Patent WO03054755 prokMSA_id:069078 AY006675 rumen prokMSA_id:041674 AY038396 Cytophagales clone CD5G9 prokMSA_id:041656 AY038397 Cytophagales clone CD5H10 prokMSA_id:023371 AY038512 clone CD4C2 prokMSA_id:045530 AY038513 clone CD1C2 prokMSA_id:043796 AY038521 Cytophagales clone CD4A4 prokMSA_id:035289 AY038522 Cytophagales clone CD4A9 prokMSA_id:086324 AY092178 clone BM125 prokMSA_id:083568 AY092179 clone BM18 prokMSA_id:086058 AY092180 clone BM76 prokMSA_id:083674 AY092181 clone BM129 prokMSA_id:086663 AY092182 clone BF30 prokMSA_id:083133 AY092183 clone BF70 prokMSA_id:084299 AY092188 clone BF98 prokMSA_id:084928 AY092189 clone BM44 prokMSA_id:084169 AY092190 clone BM45 prokMSA_id:085157 AY092191 clone BM96 prokMSA_id:084195 AY092192 clone BM143 prokMSA_id:083747 AY092193 clone BM105 prokMSA_id:084272 AY092194 clone BM78 prokMSA_id:083500 AY092195 clone BM75 prokMSA_id:082845 AY092196 clone BM110 prokMSA_id:085069 AY092197 clone BM118 prokMSA_id:084764 AY092198 clone BI69 prokMSA_id:082691 AY092199 clone BF48 prokMSA_id:083229 AY092200 clone BF85 prokMSA_id:083090 AY092206 clone BF108 prokMSA_id:059809 AY133379 clone OB3_8 prokMSA_id:060864 AY135902 clone SG2-29 prokMSA_id:095918 AY147384 Sphingobacteriales Wd12 prokMSA_id:097669 AY147392 Sphingobacteriales Wd34 prokMSA_id:080260 AY161242 clone SSADM_EE10 prokMSA_id:076102 AY168724 clone HC-27P prokMSA_id:082181 AY187536 clone SD117 prokMSA_id:083051 AY197381 clone B01R010 prokMSA_id:084208 AY197391 clone B01R030 prokMSA_id:082790 AY197393 clone B02R003 prokMSA_id:085457 AY223536 clone ATIA-8 prokMSA_id:085131 AY226263 clone BBBB-69 prokMSA_id:086405 AY226313 clone DBBB-79 prokMSA_id:086295 AY226320 clone DBBB-91 prokMSA_id:083459 AY231333 clone ER2_8 prokMSA_id:082961 AY239549 clone CARB_ER1_11 prokMSA_id:086102 AY239552 clone CARB_ER1_7 prokMSA_id:085327 AY239564 clone CARB_ER1_18 prokMSA_id:087747 AY261412 clone RFLP U58 prokMSA_id:086866 AY261421 clone RFLP U108 prokMSA_id:087231 AY279040 clone CS014 prokMSA_id:089897 AY311776 clone YRCF19 prokMSA_id:093228 AY329089 Bacteroidetes clone M1+BC1 prokMSA_id:093380 AY329093 Bacteroidetes clone M1+BC18 prokMSA_id:094164 AY329119 Cytophagales clone M3+BC15 prokMSA_id:094091 AY329124 Cytophagales clone M3+C13 prokMSA_id:093321 AY329125 Cytophagales clone M3-C4 prokMSA_id:094051 AY329126 Cytophagales clone M3-C52 prokMSA_id:093509 AY329127 Cytophagales clone M3-C54 prokMSA_id:093998 AY329128 Cytophagales clone M3-C57 prokMSA_id:094194 AY329129 Cytophagales clone M3-C59 prokMSA_id:094260 AY329131 Cytophagales clone M3-C55 prokMSA_id:091886 AY340862 isolate DGGE fragment SR_FBR_L6 prokMSA_id:093374 AY361917 clone P8-GEN-5 prokMSA_id:093312 AY361926 clone P8-GEN-14 prokMSA_id:093820 AY361931 clone P8-GEN-19 prokMSA_id:094486 AY369153 clone F-OTU16 prokMSA_id:001893 D12661 Cytophaga fermentans NCIMB 2218 . prokMSA_id:001894 M58766 Cytophaga fermentans prokMSA_id:018633 U81663 clone vadinBB12 prokMSA_id:039363 Y12098 strain MR15C 2.15.1.2.5 ML.AGAROVORANS_SUBGROUP 30 seqs 2.15.1.2.5.001 OTU 1 seq prokMSA_id:001918 AF050543 clone WCHB1-32. 2.15.1.2.5.002 OTU 1 seq prokMSA_id:032729 AF414569 clone P3IB-39 2.15.1.2.5.003 OTU 1 seq prokMSA_id:051657 AJ418048 Anaerophaga thermohalophila strain Fru22 2.15.1.2.5.004 OTU 1 seq prokMSA_id:064421 AY102902 clone BCM3S-11B 2.15.1.2.5.005 OTU 1 seq prokMSA_id:067837 AY082469 CFB group clone 44a-B1-42 2.15.1.2.5.006 OTU 1 seq prokMSA_id:081805 AY218577 clone KD2-16 2.15.1.2.5.007 OTU 1 seq prokMSA_id:081865 AY218578 clone KD2-19 2.15.1.2.5.999 poor quality 23 seqs prokMSA_id:025566 AF107322 freshwater LCK-24 prokMSA_id:042994 AF107332 freshwater LCK-64 prokMSA_id:020771 AF107336 freshwater LCK-80 prokMSA_id:050760 AF289874 Cytophagales Kmlps0-22 prokMSA_id:071934 AF320940 Lake Michigan sediment LMBA22 prokMSA_id:068100 AF365636 clone BM89DS1BbB2 prokMSA_id:055814 AF365647 clone BM89DS1BD4 prokMSA_id:068002 AF365754 clone BT60DS4BE9 prokMSA_id:022486 AF428873 clone CR98-24-67 prokMSA_id:064784 AF434154 CFB/Green sulfur group clone M1-1-24 prokMSA_id:064780 AF434157 CFB/Green sulfur group clone S1-1-34 prokMSA_id:064778 AF434158 CFB/Green sulfur group clone S4-1-12 prokMSA_id:064777 AF434159 CFB/Green sulfur group clone S5-1-13 prokMSA_id:064775 AF434160 CFB/Green sulfur group clone P3-1-13 prokMSA_id:081806 AF466707 CFB group clone DBS4 prokMSA_id:073817 AH010344 Lake Michigan sediment LMBA22 and genes prokMSA_id:057244 AJ518255 clone Mul2P2-70 prokMSA_id:069226 AY006750 rumen prokMSA_id:001915 D12654 Marinilabilia agarovorans NCIMB 2217 . prokMSA_id:001916 D12672 Marinilabilia salmonicolor NCIMB 2216 . prokMSA_id:001917 M62422 Marinilabilia agarovorans ATCC 19043 . prokMSA_id:046629 U81673 clone vadinBB53 prokMSA_id:052415 U81691 clone vadinBE72 2.15.1.2.6 BAC.SPLANCHNICUS_SUBGROUP 16 seqs 2.15.1.2.6.001 OTU 1 seq prokMSA_id:001921 AF029039 clone SB-1. 2.15.1.2.6.002 OTU 1 seq prokMSA_id:001920 AF142974 clone TAYNAYA-26. 2.15.1.2.6.003 OTU 1 seq prokMSA_id:040702 AB045740 fiber-attaching rumen SY4 2.15.1.2.6.004 OTU 1 seq prokMSA_id:057446 AJ441238 CFB group clone P. palm A/C 22 2.15.1.2.6.005 OTU 1 seq prokMSA_id:061087 AF530302 clone cadhufec059h7 2.15.1.2.6.006 OTU 1 seq prokMSA_id:073753 AF132284 adhufec291 2.15.1.2.6.007 OTU 1 seq prokMSA_id:086548 AY228694 clone SSE2 2.15.1.2.6.008 OTU 1 seq prokMSA_id:098337 AY388443 clone Adhuleft49 2.15.1.2.6.999 poor quality 8 seqs prokMSA_id:031822 AJ419013 clone kl036 prokMSA_id:037805 AJ419015 clone kl040 prokMSA_id:020883 AJ419022 clone kl061 prokMSA_id:035769 AJ419027 clone kl070 prokMSA_id:025573 AJ419064 clone kl152 prokMSA_id:059897 AY133094 Bacteroidetes clone ccslm285 prokMSA_id:083985 AY197415 clone B04P011 prokMSA_id:001919 L16496 Bacteroides splanchnicus NCTC 10825 . 2.15.1.2.7 PPM.MACACAE_SUBGROUP 440 seqs 2.15.1.2.7.001 OTU 1 seq prokMSA_id:001976 U81730 clone vadinHA28. 2.15.1.2.7.002 OTU 1 seq prokMSA_id:001975 U81722 clone vadinHA54. 2.15.1.2.7.003 OTU 1 seq prokMSA_id:001974 U81680 clone vadinBC11. 2.15.1.2.7.004 OTU 5 seqs prokMSA_id:001928 AB003389 Bacteroides sp. str. sp4. prokMSA_id:001973 AB003390 Bacteroides sp. str. sp14. prokMSA_id:039807 AF422658 clone d071 prokMSA_id:066177 AJ488088 clone IIB-29 prokMSA_id:085173 AY239568 clone CARB_ER2_6 2.15.1.2.7.005 OTU 4 seqs prokMSA_id:001968 AB009171 clone RFN12. prokMSA_id:001970 AB009199 clone RFN43. prokMSA_id:001942 AB009203 clone RFN47. prokMSA_id:001972 AB009233 clone RFN86. 2.15.1.2.7.006 OTU 2 seqs prokMSA_id:001943 AB009214 clone RFN67. prokMSA_id:001971 AB009221 clone RFN73. 2.15.1.2.7.007 OTU 1 seq prokMSA_id:001969 AB009197 clone RFN41. 2.15.1.2.7.008 OTU 1 seq prokMSA_id:001966 U41355 str. CDC Group DF-3. 2.15.1.2.7.009 OTU 1 seq prokMSA_id:001963 AF129860 clone BB23. 2.15.1.2.7.010 OTU 33 seqs prokMSA_id:035745 AB035455 Porphyromonas gingivalis strain:FDC 381 prokMSA_id:049110 AB035456 Porphyromonas gingivalis strain:W83 prokMSA_id:033338 AB035457 Porphyromonas gingivalis strain:SUNY1021 prokMSA_id:046900 AB035458 Porphyromonas gingivalis strain:A7A1-28 prokMSA_id:053253 AB035459 Porphyromonas gingivalis strain:ATCC33277 prokMSA_id:093631 AE017172 Porphyromonas gingivalis W83 section 1 of 8 of the complete genome prokMSA_id:093824 AE017176 Porphyromonas gingivalis W83 section 5 of 8 of the complete genome prokMSA_id:093948 AE017177 Porphyromonas gingivalis W83 section 6 of 8 of the complete genome prokMSA_id:093277 AE017179 Porphyromonas gingivalis W83 section 8 of 8 of the complete genome prokMSA_id:035989 AF208290 Porphyromonas gulae prokMSA_id:026186 AF285869 Porphyromonas gulae strain Manga 1.41 prokMSA_id:049606 AF285870 Porphyromonas gingivalis prokMSA_id:071638 AF285871 Porphyromonas gulae strain chat 3.1 prokMSA_id:039994 AF285872 Porphyromonas gulae strain ours 3.1 prokMSA_id:032807 AF285873 Porphyromonas gulae strain chien 4.2 prokMSA_id:047786 AF285874 Porphyromonas gulae strain B 243 prokMSA_id:042871 AF287986 Porphyromonas gulae prokMSA_id:017881 AF287987 Porphyromonas gingivalis prokMSA_id:033300 AF414809 Porphyromonas gingivalis strain ATCC 33277 prokMSA_id:034895 AF414810 Porphyromonas gingivalis strain 1-PGI prokMSA_id:042887 AF414811 Porphyromonas gingivalis strain 2-PGI prokMSA_id:074161 AF414812 Porphyromonas gingivalis strain 3-PGI prokMSA_id:035758 AF414813 Porphyromonas gingivalis strain 40-PGI prokMSA_id:044500 AF414814 Porphyromonas gingivalis strain 42-PGI prokMSA_id:036451 AF414815 Porphyromonas gingivalis strain 25-PGI prokMSA_id:033231 AF414816 Porphyromonas gingivalis strain 26-PGI prokMSA_id:018895 AF414817 Porphyromonas gingivalis strain 27-PGI prokMSA_id:042789 AF414818 Porphyromonas gingivalis strain 28-PGI prokMSA_id:071486 AF414819 Porphyromonas gingivalis strain 29-PGI prokMSA_id:031120 AF414820 Porphyromonas gingivalis strain 30-PGI prokMSA_id:001948 L16492 Porphyromonas gingivalis ATCC 33277 . prokMSA_id:093513 NC_002950 Porphyromonas gingivalis W83 complete genome prokMSA_id:001962 X73964 Porphyromonas gingivalis DSM 20709. 2.15.1.2.7.011 OTU 1 seq prokMSA_id:001960 AF153865 clone adhufec77.25. 2.15.1.2.7.012 OTU 2 seqs prokMSA_id:001959 AB009243 clone RFN96. prokMSA_id:089205 AY311771 clone YRCF12 2.15.1.2.7.013 OTU 1 seq prokMSA_id:001958 AB009231 clone RFN84. 2.15.1.2.7.014 OTU 1 seq prokMSA_id:001957 AF001767 clone RF36. 2.15.1.2.7.015 OTU 1 seq prokMSA_id:001956 AF001746 clone RF14. 2.15.1.2.7.016 OTU 1 seq prokMSA_id:001955 AF001707 clone RC16. 2.15.1.2.7.017 OTU 1 seq prokMSA_id:001954 AF001694 clone RC2. 2.15.1.2.7.019 OTU 1 seq prokMSA_id:001951 X76261 Porphyromonas canoris VPB 4882. 2.15.1.2.7.020 OTU 1 seq prokMSA_id:001950 X76260 Porphyromonas cansulci VPB 4875 . 2.15.1.2.7.021 OTU 1 seq prokMSA_id:001941 X76259 Porphyromonas cangingivalis VPB 4874 . 2.15.1.2.7.023 OTU 2 seqs prokMSA_id:001929 AF157056 Bacteroides ASF519 str. ASF 519. prokMSA_id:069900 AF357554 mpn-isolate group 6 2.15.1.2.7.026 OTU 7 seqs prokMSA_id:001924 AB009193 clone RFN37. prokMSA_id:001925 AB009207 clone RFN50. prokMSA_id:001926 AB009209 clone RFN6. prokMSA_id:001927 AB009226 clone RFN79. prokMSA_id:017505 AB056641 fiber-attaching rumen clone:SY26 prokMSA_id:090653 AB113674 clone:AAB38 prokMSA_id:084958 AY244952 rumen clone BE36 2.15.1.2.7.027 OTU 1 seq prokMSA_id:001923 AF001749 clone RF17. 2.15.1.2.7.028 OTU 12 seqs prokMSA_id:051467 AB035460 Bacteroides forsythus strain:ATCC43037 prokMSA_id:036831 AB053938 Bacteroides forsythus strain:FJ1 prokMSA_id:040709 AB053939 Bacteroides forsythus strain:G9 prokMSA_id:049167 AB053940 Bacteroides forsythus strain:HA3 prokMSA_id:038366 AB053941 Bacteroides forsythus strain:HG3 prokMSA_id:034893 AB053942 Bacteroides forsythus strain:KM3 prokMSA_id:038992 AB053943 Bacteroides forsythus strain:Ko3 prokMSA_id:040924 AB053944 Bacteroides forsythus strain:KS16 prokMSA_id:046214 AB053945 Bacteroides forsythus strain:L7 prokMSA_id:022635 AB053946 Bacteroides forsythus strain:Sai5 prokMSA_id:046574 AB053947 Bacteroides forsythus strain:TR6 prokMSA_id:001922 X73962 Bacteroides forsythus FDC 331. 2.15.1.2.7.029 OTU 1 seq prokMSA_id:016733 AF371912 clone p-184-o5 2.15.1.2.7.030 OTU 2 seqs prokMSA_id:018150 AJ408049 equine intestinal sp. CL14 clone CL14 prokMSA_id:028315 AJ408160 equine intestinal sp. ML14 clone ML14 2.15.1.2.7.031 OTU 1 seq prokMSA_id:018314 AF366271 Porphyromonas sp. clone DS033 2.15.1.2.7.032 OTU 1 seq prokMSA_id:019082 AB062826 clone:BCf5-08 2.15.1.2.7.033 OTU 2 seqs prokMSA_id:056220 AF544208 Rumen YS3 prokMSA_id:085200 AY244881 rumen clone BF3 2.15.1.2.7.034 OTU 2 seqs prokMSA_id:019882 AJ320487 isolate BUG-65 prokMSA_id:079914 AY193184 Bacteroidetes clone GalB60 2.15.1.2.7.035 OTU 2 seqs prokMSA_id:021873 AJ408036 equine intestinal sp. CL01 clone CL01 prokMSA_id:034169 AJ408247 equine intestinal sp. PW01 clone PW01 2.15.1.2.7.036 OTU 1 seq prokMSA_id:025154 AJ318126 Bacteroidetes clone BIfciii40 2.15.1.2.7.037 OTU 1 seq prokMSA_id:026171 AB045749 equine intestinal YT7 2.15.1.2.7.038 OTU 1 seq prokMSA_id:026510 AF376396 ckncm163-F3M.1B4 2.15.1.2.7.039 OTU 1 seq prokMSA_id:027468 AJ408203 equine intestinal sp. MW16 clone MW16 2.15.1.2.7.041 OTU 7 seqs prokMSA_id:029149 AY005067 Porphyromonas sp. oral clone AJ002 prokMSA_id:051233 AY005068 Porphyromonas sp. oral clone BB134 prokMSA_id:028004 AY005069 Porphyromonas sp. oral clone F016 prokMSA_id:084799 AY207054 Porphyromonas sp. oral clone P2PB_52 P1 prokMSA_id:084660 AY207057 Porphyromonas sp. oral clone P4GB_100 P2 prokMSA_id:084092 AY253728 Porphyromonas endodontalis ATCC 35406 prokMSA_id:001938 U43697 str. PUS3.23. 2.15.1.2.7.042 OTU 2 seqs prokMSA_id:028623 AF385560 Porphyromonas sp. oral clone BS045 prokMSA_id:030507 AF385561 Porphyromonas sp. oral clone BS077 2.15.1.2.7.043 OTU 1 seq prokMSA_id:028832 AF276446 clone RFLP 2E 2.15.1.2.7.044 OTU 1 seq prokMSA_id:028921 AJ408163 equine intestinal sp. ML17 clone ML17 2.15.1.2.7.045 OTU 1 seq prokMSA_id:028974 AF371918 clone p-1862-c3 2.15.1.2.7.046 OTU 1 seq prokMSA_id:030407 AJ408165 equine intestinal sp. ML19 clone ML19 2.15.1.2.7.047 OTU 3 seqs prokMSA_id:072284 AF385555 Porphyromonas sp. oral clone BR037 prokMSA_id:074406 AF393476 Porphyromonas sp. oral clone AW032 prokMSA_id:030493 AY008313 Porphyromonas sp. oral clone EP003 2.15.1.2.7.048 OTU 1 seq prokMSA_id:031170 AF371916 clone p-2177-s959-3 2.15.1.2.7.049 OTU 1 seq prokMSA_id:031626 AB078842 Bacteroidales str. WB4 2.15.1.2.7.050 OTU 1 seq prokMSA_id:032176 AJ408246 equine intestinal sp. PL40 clone PL40 2.15.1.2.7.051 OTU 1 seq prokMSA_id:034016 AJ400243 clone L7-10 2.15.1.2.7.052 OTU 2 seqs prokMSA_id:055917 AF481204 Bacteroidales oral clone MCE3_262 E2a prokMSA_id:043783 AY005070 Porphyromonas-like sp. oral clone DA065 2.15.1.2.7.053 OTU 1 seq prokMSA_id:035530 AJ408171 equine intestinal sp. ML25 clone ML25 2.15.1.2.7.054 OTU 1 seq prokMSA_id:035721 AF371917 clone p-816-a5 2.15.1.2.7.055 OTU 4 seqs prokMSA_id:069920 AF201974 Human oral C67 prokMSA_id:072586 AF385516 Porphyromonas sp. oral clone DP023 prokMSA_id:094489 AJ583190 CFB group clone S15B-MN34 prokMSA_id:072237 AY008310 Porphyromonas sp. oral clone CW034 2.15.1.2.7.056 OTU 1 seq prokMSA_id:036893 AF275919 AA17 2.15.1.2.7.057 OTU 1 seq prokMSA_id:037920 AJ408043 equine intestinal sp. CL08 clone CL08 2.15.1.2.7.058 OTU 1 seq prokMSA_id:038316 AB062835 clone:BCf7-02 2.15.1.2.7.059 OTU 1 seq prokMSA_id:038834 AJ400236 clone F3 2.15.1.2.7.060 OTU 1 seq prokMSA_id:039177 AB062838 clone:BCf7-17 2.15.1.2.7.061 OTU 1 seq prokMSA_id:040059 AF376389 ckncm156-F1M.2H5 2.15.1.2.7.062 OTU 1 seq prokMSA_id:040523 AF371922 clone p-262-o5 2.15.1.2.7.063 OTU 1 seq prokMSA_id:041054 AF276457 clone RFLP 40E 2.15.1.2.7.064 OTU 1 seq prokMSA_id:041295 AJ295642 KF-Gitt2-47 2.15.1.2.7.065 OTU 1 seq prokMSA_id:058005 AB094169 clone:C-33 2.15.1.2.7.066 OTU 1 seq prokMSA_id:041939 AJ307946 mRNA clone sipK57 2.15.1.2.7.067 OTU 1 seq prokMSA_id:042274 AB056705 equine intestinal clone:YT31 2.15.1.2.7.068 OTU 1 seq prokMSA_id:042278 AJ408151 equine intestinal sp. ML05 clone ML05 2.15.1.2.7.069 OTU 1 seq prokMSA_id:042762 AB056633 fiber-attaching rumen clone:SY15 2.15.1.2.7.070 OTU 1 seq prokMSA_id:043915 AF385565 Bacteroides sp. oral clone BU045 2.15.1.2.7.071 OTU 2 seqs prokMSA_id:049714 AJ400263 clone S24-7 prokMSA_id:044489 AJ400266 clone F5 2.15.1.2.7.072 OTU 1 seq prokMSA_id:044678 AB062769 Bacteroides sp. clone:BCf1-03 2.15.1.2.7.073 OTU 1 seq prokMSA_id:045315 AJ400245 clone L7-16 2.15.1.2.7.074 OTU 1 seq prokMSA_id:045529 AF371915 clone p-982-s962-5 2.15.1.2.7.075 OTU 1 seq prokMSA_id:046042 AB034109 rumen 4C3d-20 2.15.1.2.7.076 OTU 3 seqs prokMSA_id:074492 AJ318110 Bacteroidetes clone BIci17 prokMSA_id:046168 AJ318190 Bacteroidetes clone BIui18 prokMSA_id:091816 AJ319867 Dysgonomonas shahii strain CCUG 43457 2.15.1.2.7.077 OTU 1 seq prokMSA_id:046885 AY005072 Bacteroides-like sp. oral clone AU126 2.15.1.2.7.078 OTU 1 seq prokMSA_id:047049 AF371921 clone p-1026-a5 2.15.1.2.7.079 OTU 2 seqs prokMSA_id:077581 AB074602 CFB group clone:APe2_39 prokMSA_id:047890 Y18530 Dysgonomonas gadei strain 1145589 2.15.1.2.7.080 OTU 1 seq prokMSA_id:049015 AF371913 clone p-251-o5 2.15.1.2.7.081 OTU 1 seq prokMSA_id:049573 AF349759 TCE5 2.15.1.2.7.082 OTU 1 seq prokMSA_id:050102 AJ400249 clone L7-2 2.15.1.2.7.084 OTU 1 seq prokMSA_id:051927 AY008308 Bacteroides cf. forsythus oral clone BU063 2.15.1.2.7.085 OTU 1 seq prokMSA_id:052799 AB008902 termite gut Cd22 2.15.1.2.7.086 OTU 1 seq prokMSA_id:055494 AJ488070 clone IA-16 2.15.1.2.7.087 OTU 2 seqs prokMSA_id:060289 AY129792 Dysgonomonas sp. clone GCPF18 prokMSA_id:060280 AY129804 Dysgonomonas sp. clone GCPF36 2.15.1.2.7.088 OTU 2 seqs prokMSA_id:061060 AF530335 clone cadhufec20c09yvb prokMSA_id:061018 AF530379 clone cadhufec68c10 2.15.1.2.7.089 OTU 2 seqs prokMSA_id:061036 AF530362 clone cadhufec18g07sav prokMSA_id:081083 AY169416 Bacteroides merdae 2.15.1.2.7.090 OTU 1 seq prokMSA_id:062697 AF507858 Bacteroidetes clone ML623J-22 2.15.1.2.7.091 OTU 1 seq prokMSA_id:063166 AB034799 Porphyromonas canis 2.15.1.2.7.092 OTU 1 seq prokMSA_id:067299 AF495387 clone F10.17 2.15.1.2.7.093 OTU 1 seq prokMSA_id:068353 AF481205 Bacteroidales oral clone MCE7_196 E2a 2.15.1.2.7.094 OTU 1 seq prokMSA_id:072093 AF371910 clone p-987-s962-5 2.15.1.2.7.095 OTU 1 seq prokMSA_id:074314 AF376233 ckncm329-B6-2 2.15.1.2.7.097 OTU 7 seqs prokMSA_id:074495 AF132275 adhufec55 prokMSA_id:092376 AY343163 clone REC1M_76 prokMSA_id:092716 AY343191 clone REC6M_65 prokMSA_id:092864 AY343192 clone REC6M_7 prokMSA_id:092308 AY343201 clone REC6M_66 prokMSA_id:093041 AY343202 clone REC6M_57 prokMSA_id:001952 X83954 Bacteroides merdae ATCC 43184 . 2.15.1.2.7.098 OTU 1 seq prokMSA_id:077707 AB088927 Bacteroidaceae clone:Rs-N56 2.15.1.2.7.099 OTU 1 seq prokMSA_id:077773 AB088940 Bacteroidaceae clone:Rs-P41 2.15.1.2.7.100 OTU 1 seq prokMSA_id:077883 AB088942 Bacteroidaceae clone:Rs-B45 2.15.1.2.7.101 OTU 1 seq prokMSA_id:077887 AB088918 Bacteroidaceae clone:Rs-M03 2.15.1.2.7.102 OTU 1 seq prokMSA_id:077928 AB088932 Bacteroidaceae clone:Rs-J02 2.15.1.2.7.103 OTU 1 seq prokMSA_id:077941 AB088936 Bacteroidaceae clone:Rs-B48 2.15.1.2.7.104 OTU 1 seq prokMSA_id:077992 AB088924 Bacteroidaceae clone:Rs-K10 2.15.1.2.7.105 OTU 1 seq prokMSA_id:078037 AB088917 Bacteroidaceae clone:Rs-N74 2.15.1.2.7.106 OTU 1 seq prokMSA_id:078052 AB088935 Bacteroidaceae clone:Rs-M16 2.15.1.2.7.107 OTU 1 seq prokMSA_id:078147 AB088931 Bacteroidaceae clone:Rs-D56 2.15.1.2.7.108 OTU 1 seq prokMSA_id:078150 AB088922 Bacteroidaceae clone:Rs-B92 2.15.1.2.7.109 OTU 1 seq prokMSA_id:078277 AB088926 Bacteroidaceae clone:Rs-M12 2.15.1.2.7.110 OTU 1 seq prokMSA_id:078288 AB088943 Bacteroidaceae clone:Rs-D29 2.15.1.2.7.111 OTU 1 seq prokMSA_id:078297 AB088937 Bacteroidaceae clone:Rs-E83 2.15.1.2.7.112 OTU 1 seq prokMSA_id:078300 AB088934 Bacteroidaceae clone:Rs-F63 2.15.1.2.7.113 OTU 1 seq prokMSA_id:078378 AB088947 Bacteroidaceae clone:Rs-N41 2.15.1.2.7.115 OTU 8 seqs prokMSA_id:050365 AF280841 mle1-2 prokMSA_id:081298 AY217379 LTCE-T2A 1A prokMSA_id:082389 AY217380 LTCE-T2A 8A prokMSA_id:082081 AY217418 MTCE-T2 7A prokMSA_id:081688 AY217420 MTCE-T2 11A prokMSA_id:081280 AY217435 MTCE-T2 5D prokMSA_id:081837 AY217437 MTCE-T2 9D prokMSA_id:083204 AY239548 clone CARB_ER1_3 2.15.1.2.7.116 OTU 1 seq prokMSA_id:081365 AY217434 MTCE-T2 11A 2.15.1.2.7.117 OTU 1 seq prokMSA_id:081498 AB100456 Bacteroidaceae clone: Rs-003 2.15.1.2.7.118 OTU 1 seq prokMSA_id:081604 AB100459 Bacteroidaceae clone: Rs-096 2.15.1.2.7.119 OTU 1 seq prokMSA_id:082103 AY217446 BTCE-T2 1F 2.15.1.2.7.120 OTU 1 seq prokMSA_id:082191 AB100460 Bacteroidaceae clone: Rs-106 2.15.1.2.7.121 OTU 1 seq prokMSA_id:082304 AY217409 BTCE-T2 1E 2.15.1.2.7.122 OTU 1 seq prokMSA_id:083748 AY231349 clone ER2_24 2.15.1.2.7.123 OTU 1 seq prokMSA_id:083770 AY231338 clone ER2_13 2.15.1.2.7.124 OTU 3 seqs prokMSA_id:084938 AY244903 rumen clone BF25 prokMSA_id:084953 AY244940 rumen clone BE18 prokMSA_id:084120 AY244944 rumen clone BE29 2.15.1.2.7.125 OTU 1 seq prokMSA_id:084127 AY280650 clone G3-18 2.15.1.2.7.126 OTU 1 seq prokMSA_id:084137 AB092884 clone:ALU42 2.15.1.2.7.127 OTU 1 seq prokMSA_id:084193 AY244947 rumen clone BE20 2.15.1.2.7.128 OTU 1 seq prokMSA_id:084671 AY239538 clone CARB_ESS_7 2.15.1.2.7.129 OTU 1 seq prokMSA_id:084869 AY244963 rumen clone BS9 2.15.1.2.7.130 OTU 1 seq prokMSA_id:085501 AF499899 clone ABLCf15 2.15.1.2.7.131 OTU 1 seq prokMSA_id:085537 AY231334 clone ER2_9 2.15.1.2.7.132 OTU 1 seq prokMSA_id:085555 AY231318 clone ER1_18 2.15.1.2.7.133 OTU 1 seq prokMSA_id:085590 AY244939 rumen clone BE26 2.15.1.2.7.134 OTU 1 seq prokMSA_id:085724 AY231343 clone ER2_18 2.15.1.2.7.135 OTU 1 seq prokMSA_id:086429 AY244938 rumen clone BE25 2.15.1.2.7.136 OTU 1 seq prokMSA_id:086604 AY231329 clone ER2_4 2.15.1.2.7.137 OTU 1 seq prokMSA_id:087103 AJ488195 Rod-shaped symbiont of Mixotricha paradoxa clone B6 2.15.1.2.7.138 OTU 1 seq prokMSA_id:088212 AB113699 clone:OAB12 2.15.1.2.7.139 OTU 1 seq prokMSA_id:088551 AY315309 rumen clone JRCJ10 2.15.1.2.7.140 OTU 1 seq prokMSA_id:088973 AB113734 clone:OAB48 2.15.1.2.7.141 OTU 1 seq prokMSA_id:089062 AB113689 clone:OAB2 2.15.1.2.7.142 OTU 1 seq prokMSA_id:089851 AY311611 clone YRCA23 2.15.1.2.7.143 OTU 1 seq prokMSA_id:090655 AB113692 clone:OAB5 2.15.1.2.7.144 OTU 1 seq prokMSA_id:092206 AY343164 clone REC1M_82 2.15.1.2.7.145 OTU 1 seq prokMSA_id:093029 AY360344 Porphyromonas asaccharolytica 2.15.1.2.7.146 OTU 1 seq prokMSA_id:093925 AJ582209 CFB group clone Gitt-GS-109 2.15.1.2.7.147 OTU 1 seq prokMSA_id:094697 AB120836 clone:MC82G11 2.15.1.2.7.148 OTU 1 seq prokMSA_id:094737 AB120833 clone:MC81A05 2.15.1.2.7.149 OTU 1 seq prokMSA_id:094926 AB120840 clone:MC42D08 2.15.1.2.7.150 OTU 1 seq prokMSA_id:095114 AB120841 clone:MC82E11 2.15.1.2.7.151 OTU 1 seq prokMSA_id:095393 AY239390 clone rc3-17 complete 2.15.1.2.7.152 OTU 1 seq prokMSA_id:095522 AY239392 clone rc3-9 complete 2.15.1.2.7.153 OTU 1 seq prokMSA_id:095688 AY239409 clone rc2-304 complete 2.15.1.2.7.154 OTU 2 seqs prokMSA_id:098683 AY239406 clone rc3-37 complete prokMSA_id:095898 AY239466 Gram-negative cL10-22 2.15.1.2.7.155 OTU 1 seq prokMSA_id:096254 AY160855 clone COB P5-22 2.15.1.2.7.156 OTU 3 seqs prokMSA_id:097196 AY239399 clone rc3-52 complete prokMSA_id:096995 AY239400 clone rc4-36 complete prokMSA_id:098471 AY239414 clone rc2-244 complete 2.15.1.2.7.157 OTU 1 seq prokMSA_id:097886 AY239408 clone rc3-313 complete 2.15.1.2.7.158 OTU 1 seq prokMSA_id:097947 AY160850 clone COB P5-27 2.15.1.2.7.159 OTU 1 seq prokMSA_id:098318 AY239402 clone rc1-29 complete 2.15.1.2.7.160 OTU 1 seq prokMSA_id:098466 AY239401 clone rc1-27 complete 2.15.1.2.7.161 OTU 1 seq prokMSA_id:098557 AY160849 clone COB P1-11 2.15.1.2.7.999 poor quality 186 seqs prokMSA_id:033305 AB028369 oral AP60-10 prokMSA_id:046994 AB028378 oral AP60-19 prokMSA_id:041807 AB028417 oral RP55-8 prokMSA_id:046579 AB028440 oral RP55-43 prokMSA_id:069950 AB047117 OCG6 prokMSA_id:030846 AB063309 Anaerobic ANA No.10 prokMSA_id:043050 AB063310 Anaerobic ANA No.15 prokMSA_id:027562 AB063311 Anaerobic ANA No.37 prokMSA_id:044797 AB064550 Anaerobic ANA No.26 prokMSA_id:039636 AB064551 Anaerobic ANA No.27 prokMSA_id:017382 AB064552 Anaerobic ANA No.31 prokMSA_id:027555 AB064553 Anaerobic ANA No.32 prokMSA_id:040235 AB064554 Anaerobic ANA No.33 prokMSA_id:050062 AB064555 Anaerobic ANA No.36 prokMSA_id:021877 AB064556 Anaerobic ANA No.40 prokMSA_id:062146 AB064812 Bacteroides sp. clone:NS4C1 prokMSA_id:062145 AB064813 Bacteroides sp. clone:NB2H1 prokMSA_id:062144 AB064814 Bacteroides sp. clone:NS4A7 prokMSA_id:062061 AB064911 Bacteroides sp. CS24 prokMSA_id:065267 AB075669 chicken cecal clone:1D7 prokMSA_id:055432 AB075670 chicken cecal clone:2F4 prokMSA_id:065266 AB075671 chicken cecal clone:2G2 prokMSA_id:065240 AB075694 Bacteroides sp. C46 prokMSA_id:068481 AB081536 Oil-K-3 prokMSA_id:087510 AB099750 clone: OLDB-G11 prokMSA_id:087455 AB099751 clone: OLDA-E7 prokMSA_id:087678 AB099752 clone: OLDC-F6 prokMSA_id:087793 AB099754 clone: OLDA-B10 prokMSA_id:087093 AB099755 clone: OLDA-A1 prokMSA_id:094606 AB120844 clone:MC81C05 prokMSA_id:001967 AF001748 clone RF16. prokMSA_id:052419 AF047636 TRA1-16 prokMSA_id:024340 AF096603 isolate JV07 prokMSA_id:031058 AF096604 isolate JV14 prokMSA_id:074522 AF211213 rumen 523cARRO prokMSA_id:072163 AF253351 human infant S2E prokMSA_id:074872 AF253393 human infant L37H prokMSA_id:043752 AF289885 Cytophagales Kmlps3-9 prokMSA_id:044680 AF293937 rumen clone 35 prokMSA_id:048800 AF320301 SAB reactor band 6 prokMSA_id:018853 AF376376 ckncm143-F1M.1E3 prokMSA_id:017086 AF390908 clone ICBMF2 prokMSA_id:035123 AF408648 clone PCEDR658 prokMSA_id:048493 AF427917 clone 7B prokMSA_id:017835 AF427920 clone 11F prokMSA_id:040508 AF427922 clone 11G prokMSA_id:069938 AF427950 clone 2C prokMSA_id:026795 AF445250 Swine manure pit PPC87 prokMSA_id:040465 AF445251 Swine manure pit PPC1 prokMSA_id:037684 AF447132 clone TDC-C2 prokMSA_id:044735 AF447152 clone TDC-S3:16 prokMSA_id:077403 AF477812 CFB group clone AGCO3 prokMSA_id:077362 AF477813 CFB group clone AGCO6 prokMSA_id:083291 AF499836 clone LCLC37 prokMSA_id:086286 AF499837 clone LCLC20 prokMSA_id:085046 AF499868 clone LCTI18 prokMSA_id:062648 AF515491 clone 3B9 prokMSA_id:059297 AF529225 Bacteroides sp. ECP-C1 prokMSA_id:061091 AF530300 clone cadhufec025h7 prokMSA_id:071871 AJ011043 strain R2 prokMSA_id:058396 AJ287664 CFB-group 93ev prokMSA_id:069350 AJ287675 CFB-group 22ev prokMSA_id:069242 AJ287677 CFB-group 416ev prokMSA_id:037544 AJ287678 CFB-group 107ev prokMSA_id:072464 AJ400268 clone F11 prokMSA_id:049335 AJ418967 clone k049 prokMSA_id:043197 AJ418977 clone k062 prokMSA_id:049297 AJ418982 clone k073 prokMSA_id:050834 AJ418991 clone k103 prokMSA_id:026695 AJ418993 clone kl002 prokMSA_id:039668 AJ419000 clone kl012 prokMSA_id:032381 AJ419005 clone kl017 prokMSA_id:037913 AJ419007 clone kl021 prokMSA_id:033567 AJ419009 clone kl024 prokMSA_id:056711 AJ419017 clone kl043 prokMSA_id:018076 AJ419019 clone kl049 prokMSA_id:027128 AJ419023 clone kl062 prokMSA_id:033493 AJ419029 clone kl073 prokMSA_id:068914 AJ419030 clone kl074 prokMSA_id:019416 AJ419037 clone kl083 prokMSA_id:042287 AJ419042 clone kl092 prokMSA_id:038413 AJ419044 clone kl095 prokMSA_id:068913 AJ419046 clone kl097 prokMSA_id:016429 AJ419049 clone kl102 prokMSA_id:037772 AJ419054 clone kl112 prokMSA_id:017549 AJ419056 clone kl117 prokMSA_id:045888 AJ419057 clone kl126 prokMSA_id:052992 AJ419058 clone kl133 prokMSA_id:039797 AJ419061 clone kl145 prokMSA_id:039628 AJ419077 clone kl224 prokMSA_id:023910 AJ419078 clone kl229 prokMSA_id:078332 AJ459905 Bacteroidales clone BED 7 ME5 prokMSA_id:056908 AJ518683 clone Sai4P1-6 prokMSA_id:097545 AJ555142 Porphyromonas gingivalis prokMSA_id:096142 AX798313 86 from Patent WO03054755 prokMSA_id:098806 AX798314 87 from Patent WO03054755 prokMSA_id:097313 AX798315 88 from Patent WO03054755 prokMSA_id:097326 AX798316 89 from Patent WO03054755 prokMSA_id:098120 AX798317 90 from Patent WO03054755 prokMSA_id:098415 AX798318 91 from Patent WO03054755 prokMSA_id:097564 AX798321 94 from Patent WO03054755 prokMSA_id:036321 AY006498 rumen prokMSA_id:074865 AY006595 rumen prokMSA_id:027749 AY006655 rumen prokMSA_id:023889 AY006657 rumen prokMSA_id:051765 AY006660 rumen prokMSA_id:042244 AY006673 rumen prokMSA_id:021785 AY006684 rumen prokMSA_id:016595 AY006705 rumen prokMSA_id:030755 AY006747 rumen prokMSA_id:069115 AY006755 rumen prokMSA_id:056481 AY006850 rumen prokMSA_id:056272 AY006865 rumen prokMSA_id:028503 AY006921 rumen prokMSA_id:083108 AY092175 clone BM65 prokMSA_id:084910 AY092176 clone BM48 prokMSA_id:084059 AY092177 clone BM107 prokMSA_id:083697 AY092204 clone BM8 prokMSA_id:083504 AY092317 clone BM108 prokMSA_id:059311 AY122346 clone II-47 prokMSA_id:059313 AY122347 clone III-54 prokMSA_id:074013 AY144265 Bacteroides sp. LTUCFB04714 prokMSA_id:072783 AY144266 Bacteroides sp. LTUCFB09014 prokMSA_id:097655 AY160851 clone COB P5-30 prokMSA_id:097727 AY160854 clone COB P5-23 prokMSA_id:098428 AY160856 clone COB P5-25 prokMSA_id:082369 AY217381 LTCE-T2A 2C prokMSA_id:081149 AY217382 LTCE-T2A 3C prokMSA_id:081487 AY217404 PTCE-T2A 9F prokMSA_id:082383 AY217411 BTCE-T2 12D prokMSA_id:081700 AY217413 BTCE-T2 2F prokMSA_id:081525 AY217414 BTCE-T2 2G prokMSA_id:082100 AY217449 LTCE-T2 12A prokMSA_id:095344 AY239396 clone rc5-45 complete prokMSA_id:096673 AY239397 clone rc2-7 complete prokMSA_id:096027 AY239404 clone rc2-22 complete prokMSA_id:097507 AY239407 clone rc3-39 complete prokMSA_id:097142 AY239461 Gram-negative cTPY-13 complete prokMSA_id:097739 AY239467 Gram-negative cL-10-26 prokMSA_id:085444 AY251230 Bacteroides sp. prokMSA_id:088900 AY311615 clone YRCB14 prokMSA_id:089459 AY311632 clone YRCB44 prokMSA_id:089038 AY311639 clone YRCB56 prokMSA_id:088886 AY311663 clone YRCC39 prokMSA_id:089331 AY311688 clone YRCD22 prokMSA_id:088405 AY311704 clone YRCD46 prokMSA_id:088763 AY311705 clone YRCD47 prokMSA_id:089723 AY311709 clone YRCD53 prokMSA_id:090333 AY311758 clone YRCE63 prokMSA_id:090562 AY311767 clone YRCF07 prokMSA_id:088866 AY311779 clone YRCF23 prokMSA_id:089616 AY311782 clone YRCF32 prokMSA_id:089939 AY315227 rumen clone JRCG54 prokMSA_id:088501 AY315242 rumen clone JRCH23 prokMSA_id:088946 AY315257 rumen clone JRCI05 prokMSA_id:090073 AY315258 rumen clone JRCI08 prokMSA_id:088774 AY315260 rumen clone JRCI12 prokMSA_id:090380 AY315266 rumen clone JRCI18 prokMSA_id:090370 AY315272 rumen clone JRCI26 prokMSA_id:090061 AY315273 rumen clone JRCI27 prokMSA_id:089751 AY315284 rumen clone JRCI40 prokMSA_id:089177 AY315340 rumen clone JRCK01 prokMSA_id:095537 AY388407 clone Adhuright23 prokMSA_id:098008 AY422349 Anaerobic U3/B-1 prokMSA_id:001949 D26214 soil from paddy field clone PAD27. prokMSA_id:001936 D63593 clone UN108. prokMSA_id:001930 D63604 clone UN19. prokMSA_id:001947 D63608 clone UN26. prokMSA_id:001932 D63609 clone UN27. prokMSA_id:001939 D63621 clone UN5. prokMSA_id:001935 D63629 clone UN71. prokMSA_id:001961 D63631 clone UN77. prokMSA_id:001964 D63632 clone UN78. prokMSA_id:001944 D63637 clone UN85. prokMSA_id:001965 L16490 Porphyromonas asaccharolytica ATCC 25260 . prokMSA_id:001940 L16491 Porphyromonas endodontalis ATCC 35406 . prokMSA_id:001946 L16493 Porphyromonas levii ATCC 29147 . prokMSA_id:001934 L16494 Porphyromonas macacae ATCC 33141 . prokMSA_id:001937 L16495 Bacteroides forsythus FDC 338 . prokMSA_id:001933 L26102 Porphyromonas circumdentaria NCTC 12469 . prokMSA_id:001945 L26103 Porphyromonas macacae NCTC 11632 . prokMSA_id:001953 M86695 Bacteroides distasonis ATCC 8503 . prokMSA_id:025001 U81740 clone vadinHA61 prokMSA_id:001931 X82823 Porphyromonas catoniae ATCC 51270 . prokMSA_id:019449 Y12094 strain MR41C prokMSA_id:047720 Y12095 strain MR36D 2.15.1.2.8 BAC.FRAGILIS_SUBGROUP 350 seqs 2.15.1.2.8.001 OTU 1 seq prokMSA_id:002045 AB021157 Bacteroides acidofaciens. 2.15.1.2.8.002 OTU 1 seq prokMSA_id:002044 AF018497 clone 12-129. 2.15.1.2.8.003 OTU 4 seqs prokMSA_id:058003 AB094175 clone:C-8 prokMSA_id:058001 AB094176 clone:C-62 prokMSA_id:024383 AF132239 adhufec151 prokMSA_id:002043 AF153869 clone adhufec26.25. 2.15.1.2.8.004 OTU 1 seq prokMSA_id:002037 AB009202 clone RFN46. 2.15.1.2.8.005 OTU 2 seqs prokMSA_id:002036 AF001778 clone RFN2. prokMSA_id:090515 AY311662 clone YRCC38 2.15.1.2.8.006 OTU 2 seqs prokMSA_id:070488 AB050107 Bacteroides eggerthii prokMSA_id:002035 L16485 Bacteroides eggerthii NCTC 11185 . 2.15.1.2.8.007 OTU 1 seq prokMSA_id:002034 AF018445 clone JW16. 2.15.1.2.8.008 OTU 1 seq prokMSA_id:002033 AF153868 clone adhufec12.25. 2.15.1.2.8.009 OTU 3 seqs prokMSA_id:061069 AF530327 clone cadhufec19f02yvb prokMSA_id:061031 AF530368 clone cadhufec128c10 prokMSA_id:002030 X83953 Bacteroides stercoris ATCC 43183 . 2.15.1.2.8.010 OTU 8 seqs prokMSA_id:047157 AB050110 Bacteroides uniformis prokMSA_id:028973 AF132240 adhufec153 prokMSA_id:002024 AF139524 Bacteroides AR20 str. AR20. prokMSA_id:091931 AY338312 clone BREC_38 prokMSA_id:092974 AY343193 clone REC6M_70 prokMSA_id:092212 AY343194 clone REC6M_44 prokMSA_id:092902 AY343223 clone REC6M_59 prokMSA_id:092880 AY343224 clone REC6M_90 2.15.1.2.8.011 OTU 23 seqs prokMSA_id:052643 AB050106 Bacteroides fragilis prokMSA_id:002019 AF133539 Bacteroides CIP103040 str. 040 CIP 103. prokMSA_id:071002 AF357555 mpn-isolate group 7 prokMSA_id:061072 AF530322 clone cadhufec19c08yvb prokMSA_id:051984 AJ408981 clone HuCA33 prokMSA_id:002000 M11656 Bacteroides fragilis. prokMSA_id:002001 M61006 Bacteroides fragilis ATCC 25285 . prokMSA_id:002003 X83935 Bacteroides fragilis ATCC 25285 . prokMSA_id:002011 X83936 Bacteroides fragilis str. AIP 638. prokMSA_id:002012 X83937 Bacteroides fragilis str. 790. prokMSA_id:002013 X83938 Bacteroides fragilis str. 2991. prokMSA_id:002014 X83939 Bacteroides fragilis str. 6791. prokMSA_id:002015 X83940 Bacteroides fragilis str. 12491. prokMSA_id:002016 X83941 Bacteroides fragilis str. TAL3636. prokMSA_id:002017 X83942 Bacteroides fragilis str. B119. prokMSA_id:002018 X83943 Bacteroides fragilis str. Bfr81. prokMSA_id:002004 X83944 Bacteroides fragilis str. Bfr189. prokMSA_id:002005 X83945 Bacteroides fragilis str. Bfr901. prokMSA_id:002006 X83946 Bacteroides fragilis str. Bfr920. prokMSA_id:002007 X83947 Bacteroides fragilis str. KSB1486. prokMSA_id:002008 X83948 Bacteroides fragilis str. 2393. prokMSA_id:002009 X83949 Bacteroides fragilis str. 4117. prokMSA_id:002010 X83950 Bacteroides fragilis str. 4225. 2.15.1.2.8.012 OTU 1 seq prokMSA_id:002002 AF142826 clone BURTON-6. 2.15.1.2.8.016 OTU 2 seqs prokMSA_id:050342 AJ409009 clone HuCA21 prokMSA_id:001988 X89217 Bacteroides sp. str. BV-1. 2.15.1.2.8.017 OTU 2 seqs prokMSA_id:074577 AF132273 adhufec51 prokMSA_id:001986 X83951 Bacteroides caccae ATCC 43185 . 2.15.1.2.8.021 OTU 1 seq prokMSA_id:017702 AF233400 fecal CF123 2.15.1.2.8.022 OTU 1 seq prokMSA_id:017903 AF294908 fecal TB141 2.15.1.2.8.023 OTU 1 seq prokMSA_id:018246 AF294904 fecal TB135 2.15.1.2.8.025 OTU 1 seq prokMSA_id:018983 AJ400235 clone F2 2.15.1.2.8.026 OTU 1 seq prokMSA_id:020129 AJ318124 clone BIfciii21 2.15.1.2.8.027 OTU 1 seq prokMSA_id:020534 AF371903 clone p-817-a5 2.15.1.2.8.028 OTU 1 seq prokMSA_id:020549 AF233412 human fecal HF74 2.15.1.2.8.029 OTU 1 seq prokMSA_id:022095 AB062847 clone:BCf9-17 2.15.1.2.8.032 OTU 1 seq prokMSA_id:023918 AF294907 fecal TB147 2.15.1.2.8.035 OTU 2 seqs prokMSA_id:032760 AB056639 fiber-attaching rumen clone:SY23 prokMSA_id:024616 AB056644 fiber-attaching rumen clone:SY30 2.15.1.2.8.036 OTU 1 seq prokMSA_id:025137 AJ400264 clone L11-6 2.15.1.2.8.038 OTU 27 seqs prokMSA_id:001990 AB021156 Bacteroides acidofaciens. prokMSA_id:001991 AB021158 Bacteroides acidofaciens str. A1. prokMSA_id:001992 AB021159 Bacteroides acidofaciens str. A24. prokMSA_id:001993 AB021160 Bacteroides acidofaciens str. A29. prokMSA_id:001994 AB021161 Bacteroides acidofaciens str. A31. prokMSA_id:001995 AB021162 Bacteroides acidofaciens str. A32. prokMSA_id:001996 AB021163 Bacteroides acidofaciens str. A37. prokMSA_id:001997 AB021164 Bacteroides acidofaciens str. A40. prokMSA_id:001998 AB021165 Bacteroides acidofaciens str. A43. prokMSA_id:046476 AB050109 Bacteroides thetaiotaomicron prokMSA_id:057995 AB094183 clone:G-56 prokMSA_id:057994 AB094184 clone:G-63 prokMSA_id:083324 AE016931 Bacteroides thetaiotaomicron VPI-5482 section 6 of 21 of the complete genome prokMSA_id:085849 AE016933 Bacteroides thetaiotaomicron VPI-5482 section 8 of 21 of the complete genome prokMSA_id:086008 AE016936 Bacteroides thetaiotaomicron VPI-5482 section 11 of 21 of the complete genome prokMSA_id:084161 AE016937 Bacteroides thetaiotaomicron VPI-5482 section 12 of 21 of the complete genome prokMSA_id:083868 AE016942 Bacteroides thetaiotaomicron VPI-5482 section 17 of 21 of the complete genome prokMSA_id:072562 AF132251 adhufec23 prokMSA_id:001983 AF139525 Bacteroides AR29 str. AR29. prokMSA_id:071812 AF530346 clone cadhufec17h05sav prokMSA_id:061039 AF530359 clone cadhufec18f11sav prokMSA_id:024578 AJ315484 isolate HuCC30 prokMSA_id:017277 AJ400252 clone L7-8 prokMSA_id:025165 AJ408982 clone HuCA34 prokMSA_id:082797 AY230770 Bacteroides sp. 'Smarlab BioMol-2301151' prokMSA_id:090656 AY319392 Bacteroides thetaiotaomicron strain 17.4 prokMSA_id:086458 NC_004663 Bacteroides thetaiotaomicron VPI-5482 complete genome 2.15.1.2.8.039 OTU 2 seqs prokMSA_id:068356 AF481203 Bacteroidales oral clone MCE7_20 E1 prokMSA_id:025521 AY005066 Bacteroides-like sp. oral clone X083 2.15.1.2.8.040 OTU 1 seq prokMSA_id:025735 AF233401 fecal CF157 2.15.1.2.8.041 OTU 1 seq prokMSA_id:026770 AJ400241 clone S30-4 2.15.1.2.8.042 OTU 1 seq prokMSA_id:026888 AF371907 clone p-218-o5 2.15.1.2.8.043 OTU 1 seq prokMSA_id:028056 AF371908 clone p-194-o5 2.15.1.2.8.044 OTU 1 seq prokMSA_id:028952 AF385513 Prevotella sp. oral clone DO039 2.15.1.2.8.045 OTU 1 seq prokMSA_id:029271 AF233403 fecal CF138 2.15.1.2.8.046 OTU 1 seq prokMSA_id:029526 AF142975 TAYNAYA-27 2.15.1.2.8.047 OTU 1 seq prokMSA_id:030297 AF233407 fecal CF68 2.15.1.2.8.048 OTU 4 seqs prokMSA_id:030861 AF319778 Bacteroides sp. 139 prokMSA_id:046819 AF445205 Swine fecal FPC111 prokMSA_id:089392 AJ514255 Bacteroides sp. 111 prokMSA_id:091556 AJ514258 Bacteroides sp. 139 2.15.1.2.8.049 OTU 1 seq prokMSA_id:032849 AB062815 clone:BCf3-07 2.15.1.2.8.050 OTU 19 seqs prokMSA_id:022971 AB050111 Bacteroides vulgatus prokMSA_id:071131 AB094177 clone:C-39 prokMSA_id:028021 AF132256 adhufec27 prokMSA_id:034887 AF233408 human fecal HF8 prokMSA_id:018446 AF233409 human fecal HF117 prokMSA_id:033336 AF233410 human fecal HF102 prokMSA_id:045177 AF233411 human fecal HF145 prokMSA_id:034967 AF294909 fecal TB13 prokMSA_id:073331 AF357553 mpn-isolate group 5 prokMSA_id:086468 AF499894 clone ABLCf3 prokMSA_id:055456 AF530325 clone cadhufec19d10yvb prokMSA_id:061043 AF530357 clone cadhufec18f03sav prokMSA_id:061033 AF530367 clone cadhufec124c10 prokMSA_id:045060 AJ408965 clone HuCA9 prokMSA_id:052020 AJ408983 clone HuCA36 prokMSA_id:033268 AJ408988 clone HuCB3 prokMSA_id:047165 AJ408990 clone HuCB6 prokMSA_id:092732 AY343198 clone REC6M_14 prokMSA_id:092180 AY343205 clone REC6M_45 2.15.1.2.8.051 OTU 1 seq prokMSA_id:034159 AF233405 fecal CF46 2.15.1.2.8.052 OTU 1 seq prokMSA_id:034809 AB034021 rumen 4C0d-8 2.15.1.2.8.053 OTU 1 seq prokMSA_id:035037 AF294905 fecal TB101 2.15.1.2.8.054 OTU 1 seq prokMSA_id:036446 AF233406 fecal CF151 2.15.1.2.8.055 OTU 2 seqs prokMSA_id:037022 AB050108 Bacteroides ovatus prokMSA_id:061074 AF530320 clone cadhufec19a02yvb 2.15.1.2.8.056 OTU 1 seq prokMSA_id:038438 AJ400234 clone F1 2.15.1.2.8.057 OTU 1 seq prokMSA_id:039226 AF294906 fecal TB146 2.15.1.2.8.058 OTU 1 seq prokMSA_id:040051 AJ408264 equine intestinal sp. PW18 clone PW18 2.15.1.2.8.059 OTU 1 seq prokMSA_id:041518 AF233402 fecal CF17 2.15.1.2.8.060 OTU 1 seq prokMSA_id:058004 AB094174 clone:C-10 2.15.1.2.8.061 OTU 2 seqs prokMSA_id:041973 AF371905 clone p-1018-a5 prokMSA_id:052212 AF371906 clone p-1091-a5 2.15.1.2.8.062 OTU 1 seq prokMSA_id:043091 AF132259 adhufec303 2.15.1.2.8.063 OTU 1 seq prokMSA_id:043829 AJ400246 clone L7-17 2.15.1.2.8.064 OTU 5 seqs prokMSA_id:044276 AF132266 adhufec367 prokMSA_id:060914 AY126616 84634 prokMSA_id:092065 AY343196 clone REC6M_29 prokMSA_id:092473 AY343197 clone REC6M_92 prokMSA_id:092808 AY343203 clone REC6M_78 2.15.1.2.8.065 OTU 1 seq prokMSA_id:044290 AF233413 human fecal HF10 2.15.1.2.8.066 OTU 1 seq prokMSA_id:044524 AB045750 equine intestinal YT8 2.15.1.2.8.067 OTU 1 seq prokMSA_id:045562 AJ318147 clone BIhiii38 2.15.1.2.8.068 OTU 1 seq prokMSA_id:045921 AF371909 clone p-240-o5 2.15.1.2.8.069 OTU 2 seqs prokMSA_id:046422 AF150715 Elbe River snow isolate 9_3 prokMSA_id:073683 AY082449 Bacteroides sp. 253c 2.15.1.2.8.070 OTU 1 seq prokMSA_id:046531 AJ400242 clone S30-5 2.15.1.2.8.071 OTU 2 seqs prokMSA_id:047293 AJ318179 Bacteroidetes clone BIsii27 prokMSA_id:073751 AY082451 Bacteroides sp. 265d 2.15.1.2.8.072 OTU 1 seq prokMSA_id:048647 AF227834 str. 31285 2.15.1.2.8.073 OTU 1 seq prokMSA_id:049163 AJ408096 equine intestinal sp. DL08 clone DL08 2.15.1.2.8.074 OTU 1 seq prokMSA_id:049461 AF371900 clone p-4305-4Wa3 2.15.1.2.8.075 OTU 1 seq prokMSA_id:049912 AB008903 termite gut Cd39 2.15.1.2.8.076 OTU 1 seq prokMSA_id:050146 AB056710 equine intestinal clone:YT30 2.15.1.2.8.077 OTU 1 seq prokMSA_id:050289 AJ408259 equine intestinal sp. PW13 clone PW13 2.15.1.2.8.078 OTU 1 seq prokMSA_id:051697 AF142963 TAYNAYA-17 2.15.1.2.8.079 OTU 1 seq prokMSA_id:052362 AJ289176 E1-K8 2.15.1.2.8.080 OTU 1 seq prokMSA_id:053812 AF294903 fecal TB106 2.15.1.2.8.081 OTU 1 seq prokMSA_id:068890 AJ408225 equine intestinal sp. PL17 clone PL17 2.15.1.2.8.082 OTU 1 seq prokMSA_id:071331 AF132263 adhufec355 2.15.1.2.8.083 OTU 1 seq prokMSA_id:072466 AJ416906 Bacteroides sp. 0103 800 strain 0103 800 2.15.1.2.8.084 OTU 1 seq prokMSA_id:073517 AF385564 Prevotella sp. oral clone BU035 2.15.1.2.8.085 OTU 1 seq prokMSA_id:073937 AF371904 clone p-1273-a5 2.15.1.2.8.086 OTU 1 seq prokMSA_id:077508 AF524856 26-4b2 2.15.1.2.8.087 OTU 1 seq prokMSA_id:077598 AB088923 Bacteroidaceae clone:Rs-D66 2.15.1.2.8.088 OTU 1 seq prokMSA_id:077685 AB088929 Bacteroidaceae clone:Rs-F07 2.15.1.2.8.089 OTU 1 seq prokMSA_id:077917 AB088938 Bacteroidaceae clone:Rs-P65 2.15.1.2.8.090 OTU 1 seq prokMSA_id:077973 AB088946 Bacteroidaceae clone:Rs-M91 2.15.1.2.8.091 OTU 1 seq prokMSA_id:078080 AB088928 Bacteroidaceae clone:Rs-M21 2.15.1.2.8.092 OTU 1 seq prokMSA_id:078217 AB088941 Bacteroidaceae clone:Rs-P01 2.15.1.2.8.093 OTU 1 seq prokMSA_id:078342 AB088939 Bacteroidaceae clone:Rs-F14 2.15.1.2.8.094 OTU 1 seq prokMSA_id:079483 AY187904 clone M2 2.15.1.2.8.095 OTU 1 seq prokMSA_id:081335 AB100457 Bacteroidaceae clone: Rs-008 2.15.1.2.8.096 OTU 1 seq prokMSA_id:082138 AY217430 MTCE-T2 3G 2.15.1.2.8.097 OTU 2 seqs prokMSA_id:082474 AY239546 clone CARB_ER1_1 prokMSA_id:085746 AY239554 clone CARB_ER1_14 2.15.1.2.8.098 OTU 2 seqs prokMSA_id:082744 AY244882 rumen clone BF4 prokMSA_id:084125 AY244884 rumen clone BF6 2.15.1.2.8.099 OTU 1 seq prokMSA_id:083456 AY207061 Prevotellaceae P4P_62 P1 2.15.1.2.8.100 OTU 1 seq prokMSA_id:085329 AY239561 clone CARB_ER1_16 2.15.1.2.8.101 OTU 2 seqs prokMSA_id:085639 AY239550 clone CARB_ER1_4 prokMSA_id:086140 AY239563 clone CARB_ER1_19 2.15.1.2.8.102 OTU 1 seq prokMSA_id:089899 AB113715 clone:OAB28 2.15.1.2.8.103 OTU 1 seq prokMSA_id:090487 AY319395 Bacteroides thetaiotaomicron strain 12.4 2.15.1.2.8.104 OTU 3 seqs prokMSA_id:092635 AY343199 clone REC6M_8 prokMSA_id:092056 AY343200 clone REC6M_15 prokMSA_id:092753 AY343204 clone REC6M_30 2.15.1.2.8.105 OTU 1 seq prokMSA_id:092743 AY349399 Prevotella sp. oral clone HF050 2.15.1.2.8.106 OTU 1 seq prokMSA_id:093000 AY349400 Prevotella sp. oral clone ID019 2.15.1.2.8.107 OTU 1 seq prokMSA_id:094342 AB120832 clone:MC81A03 2.15.1.2.8.108 OTU 1 seq prokMSA_id:095353 AY239394 clone rc5-29 complete 2.15.1.2.8.109 OTU 1 seq prokMSA_id:096449 AY239391 clone rc3-27 complete 2.15.1.2.8.110 OTU 1 seq prokMSA_id:096753 AY160857 clone COB P5-16 2.15.1.2.8.111 OTU 1 seq prokMSA_id:098087 AY239469 Enterococcus sp. cL10-2b-4 complete 2.15.1.2.8.999 poor quality 151 seqs prokMSA_id:062143 AB064815 Bacteroides sp. clone:NO2-1 prokMSA_id:062142 AB064816 Bacteroides sp. clone:NS2A11 prokMSA_id:062141 AB064817 Bacteroides sp. clone:NS2D10 prokMSA_id:062137 AB064818 Bacteroides sp. clone:NB4H6 prokMSA_id:062138 AB064819 Bacteroides sp. clone:NS2D2 prokMSA_id:062140 AB064820 Bacteroides sp. clone:NS4E5 prokMSA_id:062139 AB064821 Bacteroides sp. clone:NS2B10 prokMSA_id:062136 AB064822 Bacteroides sp. clone:NS1B4 prokMSA_id:062135 AB064823 Bacteroides sp. clone:NO14 prokMSA_id:062134 AB064824 Bacteroides sp. clone:NS2C9 prokMSA_id:062132 AB064825 Bacteroides sp. clone:NO2-34 prokMSA_id:062133 AB064826 Bacteroides sp. clone:NS1F1 prokMSA_id:062130 AB064827 Bacteroides sp. clone:NB2B11 prokMSA_id:062129 AB064828 Bacteroides sp. clone:NB2E11 prokMSA_id:062127 AB064829 Bacteroides sp. clone:NO21 prokMSA_id:062128 AB064830 Bacteroides sp. clone:NB2B5 prokMSA_id:062131 AB064831 Bacteroides sp. clone:NO69 prokMSA_id:062058 AB064912 Bacteroides sp. CO58 prokMSA_id:062060 AB064913 Bacteroides sp. CB53 prokMSA_id:062056 AB064914 Bacteroides sp. CS27 prokMSA_id:062059 AB064915 Bacteroides sp. CS19 prokMSA_id:062062 AB064916 Bacteroides sp. CS3 prokMSA_id:062057 AB064917 Bacteroides sp. CS21 prokMSA_id:062053 AB064918 Bacteroides sp. CO55 prokMSA_id:062055 AB064919 Bacteroides sp. CB40 prokMSA_id:062052 AB064920 Bacteroides sp. CB2 prokMSA_id:062054 AB064921 Bacteroides sp. CB13 prokMSA_id:062050 AB064922 Bacteroides sp. CO11 prokMSA_id:065265 AB075672 chicken cecal clone:2H9 prokMSA_id:065264 AB075673 chicken cecal clone:1F8 prokMSA_id:055852 AB075674 chicken cecal clone:2B10 prokMSA_id:065255 AB075682 Bacteroides sp. C35 prokMSA_id:065254 AB075684 Bacteroides sp. C44 prokMSA_id:058729 AB080846 human intestinal clone:JW2G9 prokMSA_id:058696 AB080888 Bacteroides sp. CJ89 prokMSA_id:058695 AB080889 Bacteroides sp. CJ78 prokMSA_id:056133 AB080890 Bacteroides sp. CJ69 prokMSA_id:087365 AB099756 clone: OLDA-B4 prokMSA_id:087324 AB099757 clone: OLDB-C4 prokMSA_id:087825 AB099758 clone: OLDA-A4 prokMSA_id:087856 AB099759 clone: OLDB-H12 prokMSA_id:086916 AB099760 clone: OLDA-H10 prokMSA_id:087169 AB099761 clone: OLDA-A11 prokMSA_id:087632 AB099762 clone: OLDC-E6 prokMSA_id:086860 AB099763 clone: OLDA-F1 prokMSA_id:087214 AB099764 clone: OLDA-A2 prokMSA_id:086737 AB099768 clone: OLDC-D5 prokMSA_id:087749 AB099769 clone: OLDC-G2 prokMSA_id:094763 AB120842 clone:MC82C07 prokMSA_id:002026 AF007612 clone sh88. prokMSA_id:001989 AF096608 str. RCA10. prokMSA_id:030527 AF096609 isolate RCA124 prokMSA_id:034445 AF096610 isolate RCA127 prokMSA_id:001980 AF096613 str. RCA144. prokMSA_id:044322 AF181928 clone 23d/9 prokMSA_id:052253 AF218604 rumen jw13RRI prokMSA_id:074131 AF253352 human infant S2F prokMSA_id:070537 AF253355 human infant N3J prokMSA_id:072422 AF253379 human infant L13dG prokMSA_id:074447 AF253383 human infant L83D prokMSA_id:074449 AF253385 human infant L83J prokMSA_id:072665 AF253387 human infant L2e prokMSA_id:071354 AF253390 human infant L37C prokMSA_id:067949 AF365827 clone BT60PA10BC4 prokMSA_id:035782 AF376200 ckncm296-c8g7 prokMSA_id:018601 AF376337 ckncm104-B412.2E10 prokMSA_id:052338 AF376364 ckncm131-F1M.2B1 prokMSA_id:036105 AF376370 ckncm137-F1M.1C8 prokMSA_id:017029 AF376372 ckncm139-F1M.2D11 prokMSA_id:068898 AF380935 Prevotella sp. CH16.6 prokMSA_id:027859 AF395327 isopod gut clone RKPsAM prokMSA_id:052861 AF445252 Swine manure pit PPC100 prokMSA_id:018981 AF445253 Swine manure pit PPC99 prokMSA_id:077480 AF477811 clone AGCO51 prokMSA_id:071193 AF481813 clone S2A prokMSA_id:085426 AF499828 clone LCLC9 prokMSA_id:085214 AF499829 clone LCLC6 prokMSA_id:084571 AF499830 clone LCLC45 prokMSA_id:086696 AF499831 clone LCLC5 prokMSA_id:083485 AF499832 clone LCLC68 prokMSA_id:085900 AF499833 clone LCLC28 prokMSA_id:082930 AF499834 clone LCLC32 prokMSA_id:085939 AF499835 clone LCLC24 prokMSA_id:086064 AF499848 clone LCRC12 prokMSA_id:083515 AF499849 clone LCRC22 prokMSA_id:082849 AF499850 clone LCRC13 prokMSA_id:083592 AF499851 clone LCRC23 prokMSA_id:082978 AF499852 clone LCRC79 prokMSA_id:083092 AF499861 clone LCRC7 prokMSA_id:086544 AF499862 clone LCTI19 prokMSA_id:085881 AF499863 clone LCTI26 prokMSA_id:086167 AF499864 clone LCTI3 prokMSA_id:082738 AF499865 clone LCTI15 prokMSA_id:084912 AF499866 clone LCTI21 prokMSA_id:082983 AF499867 clone LCTI76 prokMSA_id:085612 AF499877 clone ABLC8 prokMSA_id:084717 AF499878 clone ABLC36 prokMSA_id:086279 AF499879 clone ABLC14 prokMSA_id:061075 AF530316 clone cadhufec125h7 prokMSA_id:061027 AF530373 clone cadhufec40c10 prokMSA_id:061017 AF530382 clone cadhufec97c10 prokMSA_id:040594 AJ418990 clone k099 prokMSA_id:036103 AJ418994 clone kl003 prokMSA_id:046498 AJ419002 clone kl014 prokMSA_id:032258 AJ419014 clone kl038 prokMSA_id:018886 AJ419031 clone kl075 prokMSA_id:042809 AJ419039 clone kl088 prokMSA_id:045434 AJ419059 clone kl142 prokMSA_id:035889 AJ419072 clone kl188 prokMSA_id:063073 AJ496330 Bacteroides fragilis prokMSA_id:055736 AY006656 rumen prokMSA_id:059308 AY122349 Bacteroides sp. clone II-3 prokMSA_id:059304 AY122350 Bacteroides sp. clone II-6 prokMSA_id:081331 AY217402 PTCE-T2A 2D prokMSA_id:096342 AY239403 clone rc2-15 complete prokMSA_id:095957 AY239411 clone rc4-22 complete prokMSA_id:086535 AY256584 DGGE band B2R-5 prokMSA_id:088496 AY311624 clone YRCB34 prokMSA_id:090207 AY315239 rumen clone JRCH18 prokMSA_id:088620 AY315373 rumen clone JRCK49 prokMSA_id:092287 AY343195 clone REC6M_17 prokMSA_id:098064 AY388431 clone Adhuleft11 prokMSA_id:001984 L16484 Bacteroides ovatus NCTC 11153 . prokMSA_id:002020 L16486 Bacteroides uniformis ATCC 8492 . prokMSA_id:002032 L16487 Prevotella heparinolytica ATCC 35895 . prokMSA_id:002031 L16488 Prevotella zoogleoformans ATCC 33285 . prokMSA_id:001977 L16489 Bacteroides thetaiotaomicron str. E50 ATCC 29148 . prokMSA_id:002025 M58762 Bacteroides vulgatus prokMSA_id:001982 M58763 Bacteroides thetaiotaomicron prokMSA_id:002038 U58211 Bacteroides sp. prokMSA_id:002039 U58212 Bacteroides sp. prokMSA_id:002040 U58213 Bacteroides sp. prokMSA_id:002041 U58214 Bacteroides sp. prokMSA_id:002042 U58226 Bacteroides sp. prokMSA_id:002021 U58232 Bacteroides uniformis. prokMSA_id:002022 U58247 Bacteroides uniformis. prokMSA_id:002023 U58254 Bacteroides uniformis. prokMSA_id:002028 U58261 Bacteroides vulgatus. prokMSA_id:002029 U58264 Bacteroides sp. prokMSA_id:001981 U81655 clone vadinBA34. prokMSA_id:037857 U81685 clone vadinBD07 prokMSA_id:038499 U81703 clone vadinDC01 prokMSA_id:001999 U81724 clone vadinHA45. prokMSA_id:049013 U81744 clone vadinHB29 prokMSA_id:037864 U81770 clone vadinIA66 prokMSA_id:072064 U85101 cytophagales clone ACK-W3 prokMSA_id:001985 X83952 Bacteroides ovatus ATCC 8483 . prokMSA_id:001978 Y12093 str. MR22D. prokMSA_id:001979 Y12097 str. MR41D. prokMSA_id:001987 Z77463 unnamed organism. prokMSA_id:002027 Z77590 str. 1-700 C40. 2.15.1.2.9 PRV.TANNERAE_SUBGROUP 13 seqs 2.15.1.2.9.003 OTU 9 seqs prokMSA_id:030384 AF183402 Prevotella tannerae strain 131-9-1 complete prokMSA_id:028563 AF183403 Prevotella tannerae strain 29-1 complete prokMSA_id:035980 AF183404 Prevotella tannerae strain 83-10-2 complete prokMSA_id:038368 AF183405 Prevotella tannerae strain 89-9-1 complete prokMSA_id:037055 AF183406 Prevotella tannerae strain 93-1-2 complete prokMSA_id:002046 AJ005634 Prevotella tannerae ATCC 51259 . prokMSA_id:072923 AJ289169 E1-K12 prokMSA_id:063115 AY093466 clone MB-A2-118 prokMSA_id:002047 U43699 str. PUS3.42. 2.15.1.2.9.004 OTU 1 seq prokMSA_id:038227 AJ289170 E1-K15 2.15.1.2.9.005 OTU 1 seq prokMSA_id:046419 AF371901 clone p-1939-s962-3 2.15.1.2.9.006 OTU 1 seq prokMSA_id:092225 AY349402 Prevotella sp. oral clone IK062 2.15.1.2.9.999 poor quality 1 seq prokMSA_id:022308 AB028437 oral RP55-32 2.15.1.2.10 PRV.BRYANTII_SUBGROUP 32 seqs 2.15.1.2.10.001 OTU 1 seq prokMSA_id:002058 AF018536 clone 30-42. 2.15.1.2.10.002 OTU 4 seqs prokMSA_id:002051 AF018460 clone 12-16. prokMSA_id:002052 AF018481 clone 12-102. prokMSA_id:002053 AF018492 clone 12-119. prokMSA_id:002057 AF018520 clone 30-25. 2.15.1.2.10.003 OTU 1 seq prokMSA_id:002056 AF018517 clone 30-21. 2.15.1.2.10.004 OTU 1 seq prokMSA_id:002055 AF018511 clone 30-14. 2.15.1.2.10.005 OTU 1 seq prokMSA_id:002054 AF018510 clone 30-13. 2.15.1.2.10.008 OTU 8 seqs prokMSA_id:052763 AB034105 rumen 5C3d-8 prokMSA_id:023685 AB034106 rumen 5C3d-4 prokMSA_id:039885 AB034107 rumen 3C3d-16 prokMSA_id:002049 AF001755 clone RF23. prokMSA_id:002050 AF018453 clone 12-4. prokMSA_id:031856 AF396925 Prevotella bryantii prokMSA_id:002048 AJ006457 Prevotella bryantii str. B14 DSM 11371 . prokMSA_id:080056 AY189149 Prevotella bryantii isolate 25A 2.15.1.2.10.009 OTU 1 seq prokMSA_id:028970 AF371879 clone p-1849-c3 2.15.1.2.10.010 OTU 1 seq prokMSA_id:030061 AJ408260 equine intestinal sp. PW14 clone PW14 2.15.1.2.10.011 OTU 1 seq prokMSA_id:031029 AJ408056 equine intestinal sp. CL22 clone CL22 2.15.1.2.10.012 OTU 1 seq prokMSA_id:042406 AF371884 clone p-185-o5 2.15.1.2.10.013 OTU 1 seq prokMSA_id:047181 AF371883 clone p-1005-a5 2.15.1.2.10.014 OTU 1 seq prokMSA_id:049682 AF371886 clone p-219-o5 2.15.1.2.10.015 OTU 1 seq prokMSA_id:071799 AF385558 Prevotella sp. oral clone BS041 2.15.1.2.10.016 OTU 2 seqs prokMSA_id:089301 AB113728 clone:OAB41 prokMSA_id:090493 AB113731 clone:OAB45 2.15.1.2.10.017 OTU 1 seq prokMSA_id:092942 AY349401 Prevotella sp. oral clone IK053 2.15.1.2.10.999 poor quality 6 seqs prokMSA_id:071188 AF018473 rumen 12-63 prokMSA_id:068878 AF376199 ckncm295-m8e8 prokMSA_id:098333 AY239405 clone rc2-26 complete prokMSA_id:089342 AY315267 rumen clone JRCI19 prokMSA_id:088991 AY315300 rumen clone JRCI69 prokMSA_id:089092 AY315316 rumen clone JRCJ19 2.15.1.2.11 PRV.RUMINICOLA_SUBGROUP 326 seqs 2.15.1.2.11.001 OTU 1 seq prokMSA_id:002170 AJ009933 Prevotella aff. ruminicola Tc2-24 str. Tc2-24. 2.15.1.2.11.002 OTU 2 seqs prokMSA_id:002160 AF018526 clone 30-32. prokMSA_id:002168 AF018541 clone 30-47. 2.15.1.2.11.003 OTU 1 seq prokMSA_id:002167 AF018540 clone 30-46. 2.15.1.2.11.004 OTU 1 seq prokMSA_id:002166 AF018535 clone 30-41. 2.15.1.2.11.005 OTU 2 seqs prokMSA_id:002146 AF018491 clone 12-118. prokMSA_id:002165 AF018533 clone 30-39. 2.15.1.2.11.006 OTU 1 seq prokMSA_id:002164 AF018532 clone 30-38. 2.15.1.2.11.007 OTU 2 seqs prokMSA_id:002162 AF018528 clone 30-34. prokMSA_id:002163 AF018529 clone 30-35. 2.15.1.2.11.008 OTU 1 seq prokMSA_id:002161 AF018527 clone 30-33. 2.15.1.2.11.009 OTU 1 seq prokMSA_id:002159 AF018525 clone 30-31. 2.15.1.2.11.010 OTU 1 seq prokMSA_id:002158 AF018524 clone 30-30. 2.15.1.2.11.011 OTU 1 seq prokMSA_id:002157 AF018523 clone 30-29. 2.15.1.2.11.012 OTU 1 seq prokMSA_id:002154 AF018518 clone 30-23. 2.15.1.2.11.013 OTU 1 seq prokMSA_id:002153 AF018515 clone 30-18. 2.15.1.2.11.014 OTU 1 seq prokMSA_id:002152 AF018514 clone 30-17. 2.15.1.2.11.015 OTU 1 seq prokMSA_id:002151 AF018507 clone 30-10. 2.15.1.2.11.016 OTU 1 seq prokMSA_id:002150 AF018504 clone 30-6. 2.15.1.2.11.017 OTU 1 seq prokMSA_id:002149 AF018501 clone 30-3. 2.15.1.2.11.018 OTU 1 seq prokMSA_id:002148 AF018498 clone 12-130. 2.15.1.2.11.019 OTU 1 seq prokMSA_id:002147 AF018494 clone 12-125. 2.15.1.2.11.020 OTU 2 seqs prokMSA_id:002145 AF018490 clone 12-115. prokMSA_id:084913 AY244911 rumen clone BF33 2.15.1.2.11.021 OTU 1 seq prokMSA_id:002144 AF018488 clone 12-112. 2.15.1.2.11.022 OTU 1 seq prokMSA_id:002143 AF018482 clone 12-103. 2.15.1.2.11.023 OTU 1 seq prokMSA_id:002142 AF018480 clone 12-101. 2.15.1.2.11.024 OTU 1 seq prokMSA_id:002140 AF018469 clone 12-51. 2.15.1.2.11.025 OTU 1 seq prokMSA_id:002138 AF018465 clone 12-39. 2.15.1.2.11.026 OTU 1 seq prokMSA_id:002139 AF018467 clone 12-46. 2.15.1.2.11.027 OTU 1 seq prokMSA_id:002137 AF018458 clone 12-12. 2.15.1.2.11.028 OTU 3 seqs prokMSA_id:002135 AF018446 clone JW17. prokMSA_id:089089 AY315256 rumen clone JRCI03 prokMSA_id:089900 AY315341 rumen clone JRCK02 2.15.1.2.11.029 OTU 1 seq prokMSA_id:002134 AF018442 clone JW10. 2.15.1.2.11.030 OTU 1 seq prokMSA_id:002133 AF018441 clone JW9. 2.15.1.2.11.031 OTU 1 seq prokMSA_id:002132 AF018440 clone JW7. 2.15.1.2.11.032 OTU 1 seq prokMSA_id:002131 AF018439 clone JW2. 2.15.1.2.11.033 OTU 2 seqs prokMSA_id:002127 AB009224 clone RFN76. prokMSA_id:002130 AB009239 clone RFN92. 2.15.1.2.11.034 OTU 1 seq prokMSA_id:002129 AB009238 clone RFN91. 2.15.1.2.11.035 OTU 1 seq prokMSA_id:002128 AB009236 clone RFN9. 2.15.1.2.11.036 OTU 2 seqs prokMSA_id:002122 AB009170 clone RFN11. prokMSA_id:002126 AB009223 clone RFN75. 2.15.1.2.11.037 OTU 1 seq prokMSA_id:002125 AB009196 clone RFN40. 2.15.1.2.11.038 OTU 2 seqs prokMSA_id:002124 AB009178 clone RFN19. prokMSA_id:002121 AF001777 clone RFN1. 2.15.1.2.11.039 OTU 2 seqs prokMSA_id:002123 AB009174 clone RFN15. prokMSA_id:002116 AF001750 clone RF18. 2.15.1.2.11.040 OTU 1 seq prokMSA_id:002120 AF001773 clone RFP6. 2.15.1.2.11.041 OTU 2 seqs prokMSA_id:002119 AF001763 clone RF31. prokMSA_id:085507 AY244904 rumen clone BF26 2.15.1.2.11.042 OTU 1 seq prokMSA_id:002118 AF001759 clone RF27. 2.15.1.2.11.043 OTU 1 seq prokMSA_id:002117 AF001752 clone RF20. 2.15.1.2.11.044 OTU 1 seq prokMSA_id:002115 AF001714 clone RC24. 2.15.1.2.11.045 OTU 1 seq prokMSA_id:002114 AF001709 clone RC18. 2.15.1.2.11.046 OTU 1 seq prokMSA_id:002113 AF001705 clone RC14. 2.15.1.2.11.047 OTU 1 seq prokMSA_id:002112 AF001703 clone RC11. 2.15.1.2.11.048 OTU 1 seq prokMSA_id:002110 AF018539 clone 30-45. 2.15.1.2.11.049 OTU 1 seq prokMSA_id:002109 AF018538 clone 30-44. 2.15.1.2.11.050 OTU 1 seq prokMSA_id:002108 AF018537 clone 30-43. 2.15.1.2.11.051 OTU 1 seq prokMSA_id:002107 AF018531 clone 30-37. 2.15.1.2.11.052 OTU 9 seqs prokMSA_id:002097 AF018477 clone 12-70. prokMSA_id:002106 AF018530 clone 30-36. prokMSA_id:085887 AY244900 rumen clone BF22 prokMSA_id:085996 AY244906 rumen clone BF28 prokMSA_id:085899 AY244924 rumen clone BE7 prokMSA_id:084424 AY244927 rumen clone BE10 prokMSA_id:084905 AY244932 rumen clone BE22 prokMSA_id:083241 AY244945 rumen clone BE30 prokMSA_id:086234 AY244946 rumen clone BE32 2.15.1.2.11.053 OTU 1 seq prokMSA_id:002105 AF018516 clone 30-19. 2.15.1.2.11.055 OTU 1 seq prokMSA_id:002103 AF018512 clone 30-15. 2.15.1.2.11.056 OTU 1 seq prokMSA_id:002102 AF018508 clone 30-11. 2.15.1.2.11.057 OTU 1 seq prokMSA_id:002101 AF018502 clone 30-4. 2.15.1.2.11.058 OTU 1 seq prokMSA_id:002100 AF018500 clone 30-1. 2.15.1.2.11.059 OTU 1 seq prokMSA_id:002099 AF018499 clone 12-132. 2.15.1.2.11.060 OTU 1 seq prokMSA_id:002098 AF018496 clone 12-127. 2.15.1.2.11.061 OTU 3 seqs prokMSA_id:018443 AB034101 rumen 3C3d-1 prokMSA_id:002065 AF001729 clone RCP19. prokMSA_id:002096 AF018475 clone 12-66. 2.15.1.2.11.062 OTU 1 seq prokMSA_id:002095 AF018468 clone 12-50. 2.15.1.2.11.063 OTU 1 seq prokMSA_id:002094 AF018459 clone 12-15. 2.15.1.2.11.064 OTU 1 seq prokMSA_id:002093 AF018450 clone JW31. 2.15.1.2.11.065 OTU 1 seq prokMSA_id:002092 AF018447 clone JW20. 2.15.1.2.11.066 OTU 1 seq prokMSA_id:002091 AF018438 clone JW1. 2.15.1.2.11.071 OTU 5 seqs prokMSA_id:002073 AB009184 clone RFN26. prokMSA_id:002076 AB009194 clone RFN38. prokMSA_id:002077 AB009206 clone RFN5. prokMSA_id:002082 AB009240 clone RFN93. prokMSA_id:002083 AB009241 clone RFN94. 2.15.1.2.11.072 OTU 1 seq prokMSA_id:002081 AB009237 clone RFN90. 2.15.1.2.11.073 OTU 1 seq prokMSA_id:002080 AB009235 clone RFN89. 2.15.1.2.11.077 OTU 23 seqs prokMSA_id:002084 AB003384 Prevotella sp. str. sp24. prokMSA_id:002085 AB003385 Prevotella sp. str. sp34. prokMSA_id:002086 AB003386 Prevotella sp. str. sp28. prokMSA_id:002087 AB003387 Prevotella sp. str. sp158. prokMSA_id:002088 AB003388 Prevotella sp. str. sp20. prokMSA_id:002089 AB003401 Prevotella ruminicola str. T31. prokMSA_id:002090 AB003403 Prevotella ruminicola subsp. ruminicola. prokMSA_id:002071 AB004909 Prevotella ruminicola str. PF20-3. prokMSA_id:002072 AB009180 clone RFN21. prokMSA_id:002075 AB009192 clone RFN36. prokMSA_id:002078 AB009215 clone RFN68. prokMSA_id:002079 AB009225 clone RFN78. prokMSA_id:041037 AB034091 rumen 4C3d-18 prokMSA_id:049294 AB034097 rumen 4C3d-1 prokMSA_id:052673 AB034099 rumen 4C3d-15 prokMSA_id:089756 AB113690 clone:OAB3 prokMSA_id:002064 AF001723 clone RC40. prokMSA_id:002066 AF001731 clone RC29. prokMSA_id:002104 AF018513 clone 30-16. prokMSA_id:082806 AY244915 rumen clone BF37 prokMSA_id:085456 AY244920 rumen clone BE3 prokMSA_id:083302 AY244941 rumen clone BE27 prokMSA_id:088980 AY315209 rumen clone JRCG25 2.15.1.2.11.078 OTU 1 seq prokMSA_id:002074 AB009187 clone RFN29. 2.15.1.2.11.079 OTU 3 seqs prokMSA_id:002067 AF001751 clone RF19. prokMSA_id:002070 AF001771 clone RF40. prokMSA_id:084681 AY244897 rumen clone BF19 2.15.1.2.11.080 OTU 4 seqs prokMSA_id:002069 AF001768 clone RF37. prokMSA_id:086611 AY244893 rumen clone BF15 prokMSA_id:085968 AY244899 rumen clone BF21 prokMSA_id:086283 AY244928 rumen clone BE11 2.15.1.2.11.081 OTU 4 seqs prokMSA_id:044404 AB056646 fiber-attaching rumen clone:SY1 prokMSA_id:088149 AB113713 clone:OAB26 prokMSA_id:002068 AF001757 clone RF25. prokMSA_id:084308 AY244951 rumen clone BE35 2.15.1.2.11.082 OTU 1 seq prokMSA_id:016433 AB056643 fiber-attaching rumen clone:SY29 2.15.1.2.11.083 OTU 1 seq prokMSA_id:017450 AB034104 rumen 4C3d-10 2.15.1.2.11.084 OTU 2 seqs prokMSA_id:019299 AB045744 fiber-attaching rumen SY11 prokMSA_id:088881 AB113704 clone:OAB17 2.15.1.2.11.085 OTU 2 seqs prokMSA_id:020466 AJ408154 equine intestinal sp. ML08 clone ML08 prokMSA_id:042790 AJ408228 equine intestinal sp. PL21 clone PL21 2.15.1.2.11.086 OTU 1 seq prokMSA_id:024482 AJ408041 equine intestinal sp. CL06 clone CL06 2.15.1.2.11.087 OTU 1 seq prokMSA_id:024907 AF371875 clone p-2190-s959-3 2.15.1.2.11.088 OTU 2 seqs prokMSA_id:025004 AF371887 clone p-281-a3 prokMSA_id:047554 AF371888 clone p-828-a5 2.15.1.2.11.089 OTU 2 seqs prokMSA_id:031669 AB034103 rumen 4C3d-5 prokMSA_id:085859 AY244898 rumen clone BF20 2.15.1.2.11.090 OTU 1 seq prokMSA_id:071561 AF371899 clone p-1864-s962-3 2.15.1.2.11.091 OTU 5 seqs prokMSA_id:058157 AF544206 Rumen YS1 prokMSA_id:083331 AY244879 rumen clone BF1 prokMSA_id:085274 AY244901 rumen clone BF23 prokMSA_id:085648 AY244948 rumen clone BE21 prokMSA_id:083447 AY244953 rumen clone BE37 2.15.1.2.11.092 OTU 1 seq prokMSA_id:043544 AF371873 clone p-2181-s959-3 2.15.1.2.11.093 OTU 1 seq prokMSA_id:043707 AB034102 rumen 6C3d-25 2.15.1.2.11.094 OTU 1 seq prokMSA_id:046597 AB034100 rumen 6C3d-16 2.15.1.2.11.095 OTU 1 seq prokMSA_id:048550 AF371876 clone p-819-a5 2.15.1.2.11.096 OTU 1 seq prokMSA_id:049981 AB056649 fiber-attaching rumen clone:SY27 2.15.1.2.11.097 OTU 1 seq prokMSA_id:069363 AB045739 fiber-attaching rumen SY3 2.15.1.2.11.098 OTU 1 seq prokMSA_id:069910 AF218619 Prevotella ruminicola strain TC2-28 2.15.1.2.11.099 OTU 1 seq prokMSA_id:070217 AY028443 mpn-isolate group 2 2.15.1.2.11.100 OTU 1 seq prokMSA_id:070362 AY005064 Prevotella sp. oral clone BI027 2.15.1.2.11.101 OTU 1 seq prokMSA_id:072956 AF018487 rumen 12-111 2.15.1.2.11.102 OTU 1 seq prokMSA_id:077385 AF349426 A4-1 2.15.1.2.11.103 OTU 1 seq prokMSA_id:083963 AY244943 rumen clone BE19 2.15.1.2.11.104 OTU 1 seq prokMSA_id:082695 AY244950 rumen clone BE34 2.15.1.2.11.105 OTU 1 seq prokMSA_id:082767 AY244916 rumen clone BF38 2.15.1.2.11.106 OTU 1 seq prokMSA_id:082965 AY244942 rumen clone BE28 2.15.1.2.11.107 OTU 2 seqs prokMSA_id:082967 AY244914 rumen clone BF36 prokMSA_id:086520 AY244919 rumen clone BE1 2.15.1.2.11.108 OTU 1 seq prokMSA_id:082971 AY244925 rumen clone BE8 2.15.1.2.11.109 OTU 2 seqs prokMSA_id:083192 AY244907 rumen clone BF29 prokMSA_id:083664 AY244923 rumen clone BE6 2.15.1.2.11.110 OTU 1 seq prokMSA_id:083344 AY244931 rumen clone BE14 2.15.1.2.11.111 OTU 1 seq prokMSA_id:083419 AY244895 rumen clone BF17 2.15.1.2.11.112 OTU 1 seq prokMSA_id:083662 AY244922 rumen clone BE5 2.15.1.2.11.113 OTU 1 seq prokMSA_id:083826 AY244905 rumen clone BF27 2.15.1.2.11.114 OTU 1 seq prokMSA_id:084178 AY244902 rumen clone BF24 2.15.1.2.11.115 OTU 2 seqs prokMSA_id:084248 AY244918 rumen clone BF40 prokMSA_id:086050 AY244934 rumen clone BE23 2.15.1.2.11.116 OTU 1 seq prokMSA_id:084270 AY244929 rumen clone BE12 2.15.1.2.11.117 OTU 1 seq prokMSA_id:084373 AY244909 rumen clone BF31 2.15.1.2.11.118 OTU 1 seq prokMSA_id:084471 AY244926 rumen clone BE9 2.15.1.2.11.119 OTU 1 seq prokMSA_id:084919 AY244921 rumen clone BE4 2.15.1.2.11.120 OTU 1 seq prokMSA_id:085799 AY244896 rumen clone BF18 2.15.1.2.11.121 OTU 1 seq prokMSA_id:085999 AY244937 rumen clone BE17 2.15.1.2.11.122 OTU 1 seq prokMSA_id:086315 AY244933 rumen clone BE15 2.15.1.2.11.123 OTU 1 seq prokMSA_id:086677 AY226233 clone BBBB-10 2.15.1.2.11.124 OTU 1 seq prokMSA_id:090021 AY315377 rumen clone JRCK54 2.15.1.2.11.125 OTU 2 seqs prokMSA_id:088613 AB113703 clone:OAB16 prokMSA_id:088103 AB113719 clone:OAB32 2.15.1.2.11.126 OTU 1 seq prokMSA_id:088150 AY315207 rumen clone JRCG21 2.15.1.2.11.127 OTU 1 seq prokMSA_id:088246 AY315326 rumen clone JRCJ32 2.15.1.2.11.128 OTU 1 seq prokMSA_id:088393 AY315240 rumen clone JRCH19 2.15.1.2.11.129 OTU 1 seq prokMSA_id:088438 AB113721 clone:OAB34 2.15.1.2.11.130 OTU 1 seq prokMSA_id:088779 AY315304 rumen clone JRCJ05 2.15.1.2.11.131 OTU 1 seq prokMSA_id:088964 AB113711 clone:OAB25 2.15.1.2.11.132 OTU 1 seq prokMSA_id:089001 AY315215 rumen clone JRCG35 2.15.1.2.11.133 OTU 1 seq prokMSA_id:089056 AB113726 clone:OAB39 2.15.1.2.11.134 OTU 1 seq prokMSA_id:089189 AY315324 rumen clone JRCJ30 2.15.1.2.11.135 OTU 1 seq prokMSA_id:089316 AY311725 clone YRCE16 2.15.1.2.11.136 OTU 1 seq prokMSA_id:089618 AB113724 clone:OAB37 2.15.1.2.11.137 OTU 1 seq prokMSA_id:089794 AY315342 rumen clone JRCK03 2.15.1.2.11.138 OTU 1 seq prokMSA_id:089798 AB113705 clone:OAB18 2.15.1.2.11.139 OTU 1 seq prokMSA_id:089818 AB113693 clone:OAB6 2.15.1.2.11.140 OTU 1 seq prokMSA_id:089910 AY315216 rumen clone JRCG36 2.15.1.2.11.141 OTU 1 seq prokMSA_id:089918 AY311724 clone YRCE15 2.15.1.2.11.142 OTU 1 seq prokMSA_id:090044 AY315363 rumen clone JRCK31 2.15.1.2.11.143 OTU 1 seq prokMSA_id:090214 AY315362 rumen clone JRCK30 2.15.1.2.11.144 OTU 1 seq prokMSA_id:090236 AB113716 clone:OAB29 2.15.1.2.11.145 OTU 1 seq prokMSA_id:090259 AY311701 clone YRCD41 2.15.1.2.11.146 OTU 1 seq prokMSA_id:090356 AY315234 rumen clone JRCH10 2.15.1.2.11.147 OTU 1 seq prokMSA_id:090361 AB113720 clone:OAB33 2.15.1.2.11.148 OTU 1 seq prokMSA_id:090378 AY315277 rumen clone JRCI31 2.15.1.2.11.149 OTU 1 seq prokMSA_id:090694 AY315230 rumen clone JRCH03 2.15.1.2.11.150 OTU 1 seq prokMSA_id:092629 AY349394 Prevotella sp. oral clone FW035 2.15.1.2.11.999 poor quality 117 seqs prokMSA_id:056693 AB064833 Prevotella sp. clone:NB2A7 prokMSA_id:062049 AB064924 Prevotella sp. CB25 prokMSA_id:002136 AF018452 clone 12-1. prokMSA_id:036035 AF018463 rumen 12-34 prokMSA_id:025082 AF018472 rumen 12-61 prokMSA_id:002141 AF018476 clone 12-67. prokMSA_id:002155 AF018521 clone 30-26. prokMSA_id:002156 AF018522 clone 30-27. prokMSA_id:002169 AF018542 clone 30-48. prokMSA_id:045160 AF071191 Mixed culture ruminal PAD71 prokMSA_id:029911 AF175624 WJGRT-87 prokMSA_id:044309 AF175673 WJGRT-214 prokMSA_id:029404 AF211207 rumen 231cARRO prokMSA_id:034575 AF211208 rumen 90cARRO prokMSA_id:042579 AF211214 rumen 509cARRO prokMSA_id:023544 AF211216 rumen 362cARRO prokMSA_id:073208 AF211218 rumen 68pARRO prokMSA_id:070951 AF211219 rumen 62pARRO prokMSA_id:073302 AF211220 rumen 626pARRO prokMSA_id:019987 AF211221 rumen 648pARRO prokMSA_id:070884 AF211222 rumen 509pARRO prokMSA_id:072600 AF211223 rumen 353pARRO prokMSA_id:074241 AF211224 rumen 351pARRO prokMSA_id:073797 AF211225 rumen 343pARRO prokMSA_id:018277 AF211226 rumen 262pARRO prokMSA_id:073313 AF211227 rumen 243pARRO prokMSA_id:069872 AF211228 rumen 194pARRO prokMSA_id:072437 AF211229 rumen 122pARRO prokMSA_id:073712 AF211230 rumen 119pARRO prokMSA_id:041732 AF211231 rumen 445pARRO prokMSA_id:045718 AF211232 rumen 242pARRO prokMSA_id:051208 AF211233 rumen 268pARRO prokMSA_id:074562 AF211234 rumen 120pARRO prokMSA_id:070285 AF211235 rumen 109pARRO prokMSA_id:033941 AF211237 rumen 648pARRO prokMSA_id:034204 AF211238 rumen 626pARRO prokMSA_id:025788 AF211239 rumen 62pARRO prokMSA_id:043021 AF211240 rumen 509pARRO prokMSA_id:039513 AF211241 rumen 445pARRO prokMSA_id:023563 AF211242 rumen 353pARRO prokMSA_id:050731 AF211243 rumen 351pARRO prokMSA_id:024955 AF211244 rumen 343pARRO prokMSA_id:040485 AF211245 rumen 268pARRO prokMSA_id:035307 AF211246 rumen 262pARRO prokMSA_id:048987 AF211247 rumen 243pARRO prokMSA_id:074687 AF211248 rumen 242pARRO prokMSA_id:041574 AF211250 rumen 122pARRO prokMSA_id:025159 AF211251 rumen 119pARRO prokMSA_id:019166 AF218597 rumen j4RRI prokMSA_id:074632 AF218598 rumen jw5RRI prokMSA_id:022042 AF218605 rumen jw14RRI prokMSA_id:040283 AF218608 rumen jw22RRI prokMSA_id:025856 AF218609 rumen jw25RRI prokMSA_id:051290 AF218611 rumen jw27RRI prokMSA_id:048454 AF218615 rumen jw181RRI prokMSA_id:073430 AF218620 Prevotella ruminicola strain TF2-5 prokMSA_id:026445 AF376194 ckncm290-m8g6 prokMSA_id:068879 AF376195 ckncm291-m8b3 prokMSA_id:039371 AF376197 ckncm293-c5b1 prokMSA_id:062647 AF515492 clone 3B18 prokMSA_id:002111 AJ011682 Prevotella brevis str. GA33 ATCC 19188 . prokMSA_id:034877 AJ418976 clone k061 prokMSA_id:048366 AJ419052 clone kl108 prokMSA_id:069146 AY006636 rumen prokMSA_id:069082 AY006670 rumen prokMSA_id:069251 AY006695 rumen prokMSA_id:055357 AY006718 rumen prokMSA_id:069337 AY006740 rumen prokMSA_id:054896 AY006753 rumen prokMSA_id:042033 AY006760 rumen prokMSA_id:055393 AY006811 rumen prokMSA_id:025873 AY006887 rumen prokMSA_id:096628 AY239398 clone rc2-14 complete prokMSA_id:090119 AY311619 clone YRCB24 prokMSA_id:089554 AY311640 clone YRCC01 prokMSA_id:089196 AY311677 clone YRCC58 prokMSA_id:088274 AY311693 clone YRCD28 prokMSA_id:090615 AY311736 clone YRCE31 prokMSA_id:090252 AY311737 clone YRCE33 prokMSA_id:090054 AY311748 clone YRCE50 prokMSA_id:089271 AY311749 clone YRCE51 prokMSA_id:090353 AY311760 clone YRCE65 prokMSA_id:089179 AY311762 clone YRCF02 prokMSA_id:088222 AY315204 rumen clone JRCG16 prokMSA_id:089915 AY315214 rumen clone JRCG34 prokMSA_id:090552 AY315224 rumen clone JRCG50 prokMSA_id:088466 AY315225 rumen clone JRCG51 prokMSA_id:088855 AY315232 rumen clone JRCH06 prokMSA_id:090373 AY315233 rumen clone JRCH07 prokMSA_id:090708 AY315236 rumen clone JRCH13 prokMSA_id:088441 AY315238 rumen clone JRCH17 prokMSA_id:088767 AY315243 rumen clone JRCH25 prokMSA_id:090436 AY315247 rumen clone JRCH41 prokMSA_id:088736 AY315252 rumen clone JRCH49 prokMSA_id:089971 AY315255 rumen clone JRCI02 prokMSA_id:089418 AY315271 rumen clone JRCI25 prokMSA_id:089051 AY315279 rumen clone JRCI35 prokMSA_id:089026 AY315283 rumen clone JRCI39 prokMSA_id:088781 AY315297 rumen clone JRCI66 prokMSA_id:088499 AY315306 rumen clone JRCJ07 prokMSA_id:089537 AY315311 rumen clone JRCJ12 prokMSA_id:089833 AY315313 rumen clone JRCJ14 prokMSA_id:088417 AY315315 rumen clone JRCJ17 prokMSA_id:088856 AY315318 rumen clone JRCJ22 prokMSA_id:090703 AY315322 rumen clone JRCJ27 prokMSA_id:089047 AY315329 rumen clone JRCJ35 prokMSA_id:088117 AY315347 rumen clone JRCK12 prokMSA_id:088508 AY315359 rumen clone JRCK27 prokMSA_id:090659 AY315361 rumen clone JRCK29 prokMSA_id:089100 AY315381 rumen clone JRCK64 prokMSA_id:090251 AY315383 rumen clone JRCK66 prokMSA_id:092313 AY343235 clone REC6M_40 prokMSA_id:002063 L16482 Prevotella ruminicola subsp. ruminicola ATCC 19189 . prokMSA_id:002060 S70835 Prevotella ruminicola str. 23. prokMSA_id:002059 S70836 Prevotella ruminicola str. TC18. prokMSA_id:002061 S70837 Prevotella brevis str. GA33 ATCC 19188 . prokMSA_id:002062 S70882 Prevotella ruminicola str. TC2-24. 2.15.1.2.12 PRV.BUCCAE_SUBGROUP 48 seqs 2.15.1.2.12.001 OTU 1 seq prokMSA_id:002181 AJ005635 Prevotella enoeca ATCC 51261 . 2.15.1.2.12.002 OTU 1 seq prokMSA_id:002179 AF018444 clone JW15. 2.15.1.2.12.003 OTU 2 seqs prokMSA_id:002176 X81876 Prevotella dentalis str. ES2645 DSM 3688 . prokMSA_id:002177 X81877 Hallella seregens ATCC 51272. 2.15.1.2.12.004 OTU 2 seqs prokMSA_id:056320 AF481229 Prevotella sp. E9_42 E4 oral isolate prokMSA_id:002175 AJ012605 Prevotella Prevotella PUS9.180. 2.15.1.2.12.005 OTU 1 seq prokMSA_id:002174 AB009191 clone RFN35. 2.15.1.2.12.006 OTU 1 seq prokMSA_id:002173 L16478 Prevotella buccae str. 938.11 ATCC 33690. 2.15.1.2.12.007 OTU 2 seqs prokMSA_id:089377 AB113725 clone:OAB38 prokMSA_id:002172 AF001708 clone RC17. 2.15.1.2.12.008 OTU 1 seq prokMSA_id:069161 AJ514252 Prevotella buccae isolate MBRG 6.2 2.15.1.2.12.009 OTU 1 seq prokMSA_id:022466 AF371872 clone p-1297-a5 2.15.1.2.12.010 OTU 1 seq prokMSA_id:026715 AJ315483 isolate HuCC28 2.15.1.2.12.011 OTU 2 seqs prokMSA_id:036936 AJ408077 equine intestinal sp. CW07 clone CW07 prokMSA_id:028097 AJ408148 equine intestinal sp. ML02 clone ML02 2.15.1.2.12.012 OTU 1 seq prokMSA_id:028413 AF371877 clone p-1310-a5 2.15.1.2.12.013 OTU 1 seq prokMSA_id:031701 AB056669 equine intestinal clone:YT3 2.15.1.2.12.014 OTU 4 seqs prokMSA_id:048063 AF202029 human oral A68 prokMSA_id:036896 AY005061 Prevotella sp. oral strain B31FD prokMSA_id:087099 AY278624 Prevotella genomosp. C1 prokMSA_id:092432 AY349398 Prevotella sp. oral clone GU027 2.15.1.2.12.015 OTU 1 seq prokMSA_id:038278 AJ400267 clone F8 2.15.1.2.12.016 OTU 1 seq prokMSA_id:046566 AF371878 clone p-863-a5 2.15.1.2.12.017 OTU 1 seq prokMSA_id:047042 AJ408157 equine intestinal sp. ML11 clone ML11 2.15.1.2.12.018 OTU 1 seq prokMSA_id:049614 AJ408090 equine intestinal sp. DL02 clone DL02 2.15.1.2.12.019 OTU 1 seq prokMSA_id:068339 AF481227 Prevotella sp. E9_34 E2 oral isolate 2.15.1.2.12.020 OTU 2 seqs prokMSA_id:073255 AY005063 Prevotella sp. oral clone CY006 prokMSA_id:092510 AY349392 Prevotella sp. oral clone FL019 2.15.1.2.12.021 OTU 1 seq prokMSA_id:076393 AY158021 Prevotella sp. RS2 2.15.1.2.12.022 OTU 1 seq prokMSA_id:088487 AB113727 clone:OAB40 2.15.1.2.12.023 OTU 1 seq prokMSA_id:089232 AY323522 Prevotella oralis 2.15.1.2.12.024 OTU 1 seq prokMSA_id:090285 AY315223 rumen clone JRCG49 2.15.1.2.12.025 OTU 1 seq prokMSA_id:090410 AY311733 clone YRCE27 2.15.1.2.12.026 OTU 1 seq prokMSA_id:093053 AY350613 Prevotella sp. W3326 2.15.1.2.12.999 poor quality 14 seqs prokMSA_id:095056 AB120845 clone:MC41A02 prokMSA_id:056466 AF515487 clone 1B13 prokMSA_id:062646 AF515493 clone 1A13 prokMSA_id:036073 AJ418959 clone k027 prokMSA_id:097046 AJ555130 Prevotella loescheii prokMSA_id:088324 AY307996 clone UB95A prokMSA_id:088527 AY311761 clone YRCF01 prokMSA_id:088469 AY315264 rumen clone JRCI16 prokMSA_id:089877 AY315281 rumen clone JRCI37 prokMSA_id:092029 AY343236 clone REC6M_23 prokMSA_id:002182 L16476 Prevotella buccalis ATCC 35310 . prokMSA_id:002178 L16477 Prevotella buccae str. VPI D3A-6 ATCC 33574 . prokMSA_id:002180 L16480 Prevotella oralis ATCC 33269 . prokMSA_id:002171 L16481 Prevotella loescheii ATCC 15930 . 2.15.1.2.13 PRV.NIGRESCENS_SUBGROUP 188 seqs 2.15.1.2.13.001 OTU 1 seq prokMSA_id:002225 AF018485 clone 12-107. 2.15.1.2.13.002 OTU 2 seqs prokMSA_id:045107 AY005056 Prevotella sp. oral clone F045 prokMSA_id:002224 U43698 str. PUS3.3. 2.15.1.2.13.003 OTU 2 seqs prokMSA_id:002221 Y13105 Prevotella pallens str. 10371 NCTC 13042 . prokMSA_id:072060 Y13106 Prevotella pallens strain 9423 2.15.1.2.13.004 OTU 3 seqs prokMSA_id:002202 AF018456 clone 12-8. prokMSA_id:002216 AF040719 Prevotella RZ str. RZ. prokMSA_id:002200 AJ011683 Prevotella albensis str. M384 DSM 11370 . 2.15.1.2.13.005 OTU 1 seq prokMSA_id:002215 AF018543 clone 30-49. 2.15.1.2.13.007 OTU 1 seq prokMSA_id:002213 AF018519 clone 30-24. 2.15.1.2.13.010 OTU 1 seq prokMSA_id:002210 AF018495 clone 12-126. 2.15.1.2.13.011 OTU 2 seqs prokMSA_id:036773 AB034149 rumen 4C28d-23 prokMSA_id:002208 AF018486 clone 12-109. 2.15.1.2.13.012 OTU 1 seq prokMSA_id:002206 AF018483 clone 12-104. 2.15.1.2.13.013 OTU 1 seq prokMSA_id:002204 AF018470 clone 12-56. 2.15.1.2.13.015 OTU 8 seqs prokMSA_id:002191 AF018455 clone 12-7. prokMSA_id:002203 AF018466 clone 12-44. prokMSA_id:041434 AF018474 rumen 12-64 prokMSA_id:002205 AF018478 clone 12-71. prokMSA_id:002207 AF018484 clone 12-106. prokMSA_id:002209 AF018489 clone 12-114. prokMSA_id:002211 AF018505 clone 30-8. prokMSA_id:002214 AF018534 clone 30-40. 2.15.1.2.13.016 OTU 1 seq prokMSA_id:002201 AB009211 clone RFN64. 2.15.1.2.13.017 OTU 15 seqs prokMSA_id:033651 AF201971 Human oral C64 prokMSA_id:073473 AF414833 Prevotella nigrescens strain ATCC 33563 prokMSA_id:035662 AF414834 Prevotella nigrescens strain 7-PNIG prokMSA_id:072329 AF414835 Prevotella nigrescens strain 8-PNIG prokMSA_id:071240 AF414836 Prevotella nigrescens strain 9-PNIG prokMSA_id:071190 AF414837 Prevotella nigrescens strain 31-PNIG prokMSA_id:052068 AF414838 Prevotella nigrescens strain 37-PNIG prokMSA_id:070986 AF414839 Prevotella nigrescens strain 11-PNIG prokMSA_id:071569 AF414840 Prevotella nigrescens strain 13-PNIG prokMSA_id:070423 AF414841 Prevotella nigrescens strain 17-PNIG prokMSA_id:073933 AF414842 Prevotella nigrescens strain 18-PNIG prokMSA_id:073458 AF414843 Prevotella nigrescens strain 20-PNIG prokMSA_id:073131 AF414844 Prevotella nigrescens strain 21-PNIG prokMSA_id:034082 AJ289187 E1-K11 prokMSA_id:002198 X73963 Prevotella nigrescens str. Lambe 729-74 NCTC 9336. 2.15.1.2.13.018 OTU 12 seqs prokMSA_id:070907 AF414822 Prevotella intermedia strain 5-PIN prokMSA_id:072550 AF414823 Prevotella intermedia strain 6-PIN prokMSA_id:028131 AF414824 Prevotella intermedia strain 32-PIN prokMSA_id:018327 AF414825 Prevotella intermedia strain 35-PIN prokMSA_id:073101 AF414826 Prevotella intermedia strain 36-PIN prokMSA_id:045410 AF414827 Prevotella intermedia strain 10-PIN prokMSA_id:017066 AF414828 Prevotella intermedia strain 15-PIN prokMSA_id:025390 AF414829 Prevotella intermedia strain 16-PIN prokMSA_id:074076 AF414830 Prevotella intermedia strain 22-PIN prokMSA_id:070556 AF414831 Prevotella intermedia strain 23-PIN prokMSA_id:070996 AF414832 Prevotella intermedia strain 24-PIN prokMSA_id:002197 X73965 Prevotella intermedia str. B422 S.Finegold ATCC 25611 . 2.15.1.2.13.019 OTU 1 seq prokMSA_id:002193 L16483 Prevotella disiens ATCC 29426 . 2.15.1.2.13.021 OTU 1 seq prokMSA_id:002188 L16473 Prevotella veroralis ATCC 33779 . 2.15.1.2.13.022 OTU 1 seq prokMSA_id:002184 AF018509 clone 30-12. 2.15.1.2.13.023 OTU 1 seq prokMSA_id:016549 AF371874 clone p-1031-a5 2.15.1.2.13.024 OTU 1 seq prokMSA_id:017164 AB078830 Bacteroidales str. KB10 2.15.1.2.13.025 OTU 1 seq prokMSA_id:018221 AB034108 rumen 4C3d-6 2.15.1.2.13.026 OTU 1 seq prokMSA_id:018282 AJ408219 equine intestinal sp. PL11 clone PL11 2.15.1.2.13.027 OTU 1 seq prokMSA_id:055854 AF481226 Prevotella sp. E7_34 E1 oral isolate 2.15.1.2.13.028 OTU 1 seq prokMSA_id:022951 AY005062 Prevotella sp. oral clone AU069 2.15.1.2.13.029 OTU 1 seq prokMSA_id:024338 AY005059 Prevotella sp. oral clone AO009 2.15.1.2.13.030 OTU 1 seq prokMSA_id:024916 AF371889 clone p-1658-c5 2.15.1.2.13.031 OTU 1 seq prokMSA_id:026182 AB034044 rumen 5C0d-11 2.15.1.2.13.032 OTU 1 seq prokMSA_id:026496 AF371893 clone p-2443-18B5 2.15.1.2.13.033 OTU 1 seq prokMSA_id:027968 AB056706 equine intestinal clone:YT24 2.15.1.2.13.034 OTU 4 seqs prokMSA_id:029831 AB078827 Bacteroidales str. KB7 prokMSA_id:048446 AB078829 Bacteroidales str. KB9 prokMSA_id:030361 AB078832 Bacteroidales str. KB12 prokMSA_id:069843 AB081578 Bacteroidaceae str. A42 2.15.1.2.13.036 OTU 2 seqs prokMSA_id:033010 AF371880 clone p-2407-55G5 prokMSA_id:031240 AF371881 clone p-2173-s959-3 2.15.1.2.13.037 OTU 1 seq prokMSA_id:031305 AB045748 equine intestinal YT5 2.15.1.2.13.038 OTU 1 seq prokMSA_id:036031 AF371894 clone p-3779-23G3 2.15.1.2.13.041 OTU 2 seqs prokMSA_id:045329 AF357552 mpn-isolate group 4 prokMSA_id:039852 AF371897 clone p-3951-23G5 2.15.1.2.13.042 OTU 3 seqs prokMSA_id:040468 AF201972 Human oral C65 prokMSA_id:073752 AY005057 Prevotella sp. oral clone AA020 prokMSA_id:054330 AY005058 Prevotella sp. oral clone AA016 2.15.1.2.13.043 OTU 3 seqs prokMSA_id:041169 AB078826 Bacteroidales str. KB3 prokMSA_id:045491 AB078831 Bacteroidales str. KB11 prokMSA_id:050178 AB078833 Bacteroidales str. KB13 2.15.1.2.13.044 OTU 1 seq prokMSA_id:041329 AJ289173 E1-K14 2.15.1.2.13.045 OTU 1 seq prokMSA_id:041911 AY005060 Prevotella sp. oral clone AH125 2.15.1.2.13.046 OTU 1 seq prokMSA_id:042820 AY005055 Prevotella sp. oral clone AO096 2.15.1.2.13.048 OTU 12 seqs prokMSA_id:033062 AB050850 CA75 prokMSA_id:042963 AF132272 adhufec43 prokMSA_id:029272 AF132282 adhufec94 prokMSA_id:002190 AF153866 clone adhufec41.25. prokMSA_id:002189 AF153867 clone adhufec61.25. prokMSA_id:038507 AF371890 clone p-1980-s959-5 prokMSA_id:036894 AF371891 clone p-1029-a5 prokMSA_id:044821 AF371892 clone p-2517-18B5 prokMSA_id:048738 AY028442 mpn-isolate group 1 prokMSA_id:092483 AY343165 clone REC1M_55 prokMSA_id:092412 AY343233 clone REC6M_16 prokMSA_id:097784 AY388452 clone Adhuleft82 2.15.1.2.13.049 OTU 1 seq prokMSA_id:045645 AF371896 clone p-1933-s962-3 2.15.1.2.13.050 OTU 1 seq prokMSA_id:046017 AF371882 clone p-408-o3 2.15.1.2.13.051 OTU 1 seq prokMSA_id:047101 AF385519 Prevotella sp. oral clone DO022 2.15.1.2.13.052 OTU 4 seqs prokMSA_id:048089 AF201973 Human oral C66 prokMSA_id:071102 AY005053 Prevotella sp. oral clone AH005 prokMSA_id:072964 AY005054 Prevotella sp. oral clone AO036 prokMSA_id:088701 AY323524 Prevotella denticola 2.15.1.2.13.053 OTU 1 seq prokMSA_id:049622 AJ408153 equine intestinal sp. ML07 clone ML07 2.15.1.2.13.054 OTU 1 seq prokMSA_id:050936 AB078825 Bacteroidales str. KB1 2.15.1.2.13.055 OTU 1 seq prokMSA_id:051061 AJ289182 E1-K13 2.15.1.2.13.056 OTU 1 seq prokMSA_id:074280 AF366269 Prevotella sp. clone DG059 2.15.1.2.13.057 OTU 1 seq prokMSA_id:060257 AF537212 Prevotella sp. P2A_FAAD4 strain P2A_FAAD4 2.15.1.2.13.058 OTU 1 seq prokMSA_id:063123 AY093462 clone MB-A2-107 2.15.1.2.13.059 OTU 1 seq prokMSA_id:068338 AF481228 Prevotella sp. E7_56 E3 oral isolate 2.15.1.2.13.060 OTU 1 seq prokMSA_id:068416 AF487886 Prevotella sp. Smarlab 121567 2.15.1.2.13.061 OTU 1 seq prokMSA_id:068838 AF371885 clone p-394-o3 2.15.1.2.13.062 OTU 1 seq prokMSA_id:070671 AF385509 Prevotella sp. oral clone DO014 2.15.1.2.13.063 OTU 1 seq prokMSA_id:071701 AF357576 mpn-isolate group 3 2.15.1.2.13.064 OTU 1 seq prokMSA_id:071710 AF371898 clone p-993-s962-5 2.15.1.2.13.065 OTU 1 seq prokMSA_id:071907 AY134905 Prevotella sp. oral clone FX046 2.15.1.2.13.066 OTU 2 seqs prokMSA_id:071918 AF385554 Prevotella sp. oral clone BR014 prokMSA_id:088035 AY278625 Prevotella genomosp. C2 2.15.1.2.13.067 OTU 1 seq prokMSA_id:072142 AF132249 adhufec235 2.15.1.2.13.068 OTU 1 seq prokMSA_id:072590 AF385512 Prevotella sp. oral clone DO033 2.15.1.2.13.069 OTU 1 seq prokMSA_id:072779 AF385511 Prevotella sp. oral clone DO027 2.15.1.2.13.070 OTU 1 seq prokMSA_id:073324 AF385515 Prevotella sp. oral clone DO045 2.15.1.2.13.071 OTU 2 seqs prokMSA_id:073666 AF218617 Prevotella ruminicola strain TC2-3 prokMSA_id:073671 AF218618 Prevotella ruminicola strain 223/M2/7 2.15.1.2.13.072 OTU 1 seq prokMSA_id:074407 AY005065 Prevotella sp. oral clone DA058 2.15.1.2.13.073 OTU 1 seq prokMSA_id:078087 AJ514430 clone ASG2 2.15.1.2.13.074 OTU 1 seq prokMSA_id:083758 AY244912 rumen clone BF34 2.15.1.2.13.075 OTU 1 seq prokMSA_id:085059 AY244894 rumen clone BF16 2.15.1.2.13.076 OTU 1 seq prokMSA_id:088135 AB113686 clone:AAB51 2.15.1.2.13.077 OTU 1 seq prokMSA_id:088490 AB113676 clone:AAB40 2.15.1.2.13.078 OTU 1 seq prokMSA_id:090072 AY315219 rumen clone JRCG42 2.15.1.2.13.080 OTU 6 seqs prokMSA_id:035402 AF385551 Prevotella sp. oral clone BE073 prokMSA_id:029968 AF432133 Prevotella sp. oral clone FM005 prokMSA_id:090223 AY323525 Prevotella melaninogenica prokMSA_id:092365 AY349393 Prevotella sp. oral clone FU048 prokMSA_id:092223 AY349395 Prevotella sp. oral clone GI030 prokMSA_id:092496 AY349397 Prevotella sp. oral clone GI059 2.15.1.2.13.081 OTU 1 seq prokMSA_id:091187 AY331415 Prevotella genomosp. P6 clone P4PB_24 2.15.1.2.13.082 OTU 1 seq prokMSA_id:092498 AY349396 Prevotella sp. oral clone GI032 2.15.1.2.13.083 OTU 1 seq prokMSA_id:095066 AY368603 clone nc-12c 2.15.1.2.13.999 poor quality 48 seqs prokMSA_id:036826 AB028352 oral SH64 prokMSA_id:053667 AB028354 oral SH66 prokMSA_id:038348 AB028385 oral AP60-26 prokMSA_id:062126 AB064832 Prevotella sp. clone:NB2E9 prokMSA_id:062051 AB064923 Prevotella sp. CB7 prokMSA_id:087688 AB099765 clone: OLDA-C11 prokMSA_id:087832 AB099766 clone: OLDC-A6 prokMSA_id:087866 AB099767 clone: OLDC-B4 prokMSA_id:037369 AF018471 rumen 12-58 prokMSA_id:002226 AF018493 clone 12-120. prokMSA_id:002192 AF018503 clone 30-5. prokMSA_id:002212 AF018506 clone 30-9. prokMSA_id:036186 AF052410 A09 prokMSA_id:026321 AF175668 WJGRT-195 prokMSA_id:026451 AF261780 swine feces F3 prokMSA_id:068125 AF365611 clone BT60MF7BC5 prokMSA_id:072112 AF414821 Prevotella intermedia strain ATCC 25611 prokMSA_id:035176 AJ404572 US23 prokMSA_id:016694 AJ418998 clone kl010 prokMSA_id:063171 AJ496328 Prevotella oris prokMSA_id:096260 AJ555137 Prevotella melaninogenica prokMSA_id:069088 AY006679 rumen prokMSA_id:069321 AY006834 rumen prokMSA_id:081854 AY193939 clone SB103 prokMSA_id:088312 AY311689 clone YRCD23 prokMSA_id:090309 AY311690 clone YRCD24 prokMSA_id:089542 AY311697 clone YRCD37 prokMSA_id:089470 AY315211 rumen clone JRCG30 prokMSA_id:090375 AY315254 rumen clone JRCI01 prokMSA_id:088959 AY315365 rumen clone JRCK37 prokMSA_id:088126 AY325759 Prevotella sp. isolate PCR amplicon RL 2145 prokMSA_id:098853 AY388438 clone Adhuleft31 prokMSA_id:002196 L16465 Prevotella corporis ATCC 33547 . prokMSA_id:002228 L16466 Prevotella denticola ATCC 33185. prokMSA_id:002187 L16467 Prevotella denticola str. 1210 ATCC 35308 . prokMSA_id:002218 L16468 Prevotella intermedia str. B422 S.Finegold ATCC 25611 . prokMSA_id:002223 L16469 Prevotella melaninogenica str. B282 ATCC 25845 . prokMSA_id:002186 L16470 Prevotella melaninogenica str. N-58-71A ATCC 43982. prokMSA_id:002195 L16471 Prevotella nigrescens str. Lambe 729-74 ATCC 33563 . prokMSA_id:002185 L16472 Prevotella oulora str. WPH 179 ATCC 43324 . prokMSA_id:002183 L16474 Prevotella oris ATCC 33573 . prokMSA_id:002217 L16475 Prevotella bivia ATCC 29303 . prokMSA_id:002227 L16479 Prevotella nigrescens str. B515 ATCC 25261. prokMSA_id:002199 S70838 Prevotella albensis str. M384 DSM 11370 . prokMSA_id:002219 S70881 Prevotella ruminicola str. 223/M2/7. prokMSA_id:002220 X82609 Prevotella melaninogenica. prokMSA_id:002222 Y13107 Prevotella pallens str. 8792. prokMSA_id:002194 Z77464 unnamed organism. 2.15.1.3 CYTOPHAGA_GROUP_I 1840 seqs 2.15.1.3.1 ENVIRONMENTAL_CLONE_3811 1 seq 2.15.1.3.1.999 poor quality 1 seq prokMSA_id:002229 X89315 clone 3811. 2.15.1.3.2 MSC.AGGREGANS_SUBGROUP 28 seqs 2.15.1.3.2.001 OTU 1 seq prokMSA_id:058645 AB078042 Flexibacter aggregans subsp. catalaticus strain:IFO 15977 2.15.1.3.2.002 OTU 2 seqs prokMSA_id:041776 AF469377 clone 33-PA87B99 prokMSA_id:038827 AF469379 clone 33-PA91B99 2.15.1.3.2.003 OTU 1 seq prokMSA_id:049398 AF314421 PHOS-HE28 2.15.1.3.2.004 OTU 1 seq prokMSA_id:077910 AY171371 clone s34 2.15.1.3.2.005 OTU 1 seq prokMSA_id:080707 AF449770 CFB group clone ML310M-46 2.15.1.3.2.006 OTU 1 seq prokMSA_id:081782 AY218600 clone KD3-110 2.15.1.3.2.007 OTU 3 seqs prokMSA_id:092855 AY354766 Bacteroidetes clone PLY-P1-2 prokMSA_id:092679 AY354768 Bacteroidetes clone PLY-P1-14 prokMSA_id:092101 AY354777 Bacteroidetes clone PLY-P1-60 2.15.1.3.2.008 OTU 2 seqs prokMSA_id:092176 AY354809 Bacteroidetes clone PLY-P3-37 prokMSA_id:092463 AY354810 Bacteroidetes clone PLY-P3-38 2.15.1.3.2.999 poor quality 16 seqs prokMSA_id:040442 AF107518 SY3-12 prokMSA_id:068203 AF365522 clone BM89MF5BF12 prokMSA_id:058806 AF540042 Bacteroidetes DGGE gel band ESR BR 7 prokMSA_id:092363 AY354881 Bacteroidetes clone AGG58-230 prokMSA_id:092525 AY354882 Bacteroidetes clone AGG58-237 prokMSA_id:092240 AY354884 Bacteroidetes clone AGG58-268 prokMSA_id:092653 AY354885 Bacteroidetes clone AGG58-277 prokMSA_id:092122 AY354886 Bacteroidetes clone AGG58-308 prokMSA_id:092184 AY354887 Bacteroidetes clone AGG58-311 prokMSA_id:092146 AY354888 Bacteroidetes clone AGG58-314 prokMSA_id:092232 AY354889 Bacteroidetes clone AGG58-327 prokMSA_id:092849 AY354890 Bacteroidetes clone AGG58-370 prokMSA_id:093060 AY354891 Bacteroidetes clone AGG58-374 prokMSA_id:002231 M58791 Microscilla aggregans subsp. catalatica str. HI-3 ATCC 23190. prokMSA_id:002230 X84568 str. SBR2026. prokMSA_id:002232 X89328 clone 5811. 2.15.1.3.3 BLT.SP_SUBGROUP 61 seqs 2.15.1.3.3.001 OTU 1 seq prokMSA_id:002243 X75622 Blattabacterium sp. 2.15.1.3.3.002 OTU 1 seq prokMSA_id:002241 AJ009687 Flavobacterium sp. 2.15.1.3.3.003 OTU 1 seq prokMSA_id:002240 Y13889 unnamed organism. 2.15.1.3.3.004 OTU 1 seq prokMSA_id:002239 Z35666 Blattabacterium sp. 2.15.1.3.3.005 OTU 1 seq prokMSA_id:002238 X75626 Blattabacterium sp. 2.15.1.3.3.006 OTU 1 seq prokMSA_id:002237 Z35665 endosymbiont of Mastotermes darwiniensis. 2.15.1.3.3.007 OTU 43 seqs prokMSA_id:052027 AF310161 Blattabacterium sp. Cryptocercus punctulatus prokMSA_id:024849 AF310162 Blattabacterium sp. Cryptocercus clevelandi prokMSA_id:042526 AF322458 Blattabacterium sp. Cryptocercus garciai isolate Vogel prokMSA_id:033549 AF322459 Blattabacterium sp. Cryptocercus garciai isolate Cherry prokMSA_id:043084 AF322460 Blattabacterium sp. Cryptocercus garciai isolate Highway prokMSA_id:039069 AF322461 Blattabacterium sp. Cryptocercus darwini isolate Buck prokMSA_id:020670 AF322462 Blattabacterium sp. Cryptocercus darwini isolate Cheaha prokMSA_id:030774 AF322463 Blattabacterium sp. Cryptocercus darwini isolate DeSoto prokMSA_id:038143 AF322464 Blattabacterium sp. Cryptocercus darwini isolate Daniel prokMSA_id:018153 AF322465 Blattabacterium sp. Cryptocercus darwini isolate Cumberland prokMSA_id:027731 AF322466 Blattabacterium sp. Cryptocercus wrighti isolate Asheville prokMSA_id:018626 AF322467 Blattabacterium sp. Cryptocercus wrighti isolate Bear prokMSA_id:025301 AF322468 Blattabacterium sp. Cryptocercus wrighti isolate Little prokMSA_id:037019 AF322469 Blattabacterium sp. Cryptocercus wrighti prokMSA_id:033965 AF322470 Blattabacterium sp. Cryptocercus punctulatus isolate Monongahela prokMSA_id:027730 AF322471 Blattabacterium sp. Cryptocercus punctulatus isolate Mountain prokMSA_id:040883 AF322472 Blattabacterium sp. Cryptocercus clevelandi prokMSA_id:021143 AF363691 Blattabacterium punctulatus prokMSA_id:042631 AF363692 Blattabacterium punctulatus prokMSA_id:016942 AF363693 Blattabacterium punctulatus prokMSA_id:024997 AF363694 Blattabacterium punctulatus prokMSA_id:031782 AF363695 Blattabacterium punctulatus prokMSA_id:037689 AF363696 Blattabacterium punctulatus prokMSA_id:049951 AF363697 Blattabacterium punctulatus prokMSA_id:050133 AF363698 Blattabacterium punctulatus prokMSA_id:050894 AF363699 Blattabacterium punctulatus prokMSA_id:035615 AF363700 Blattabacterium punctulatus prokMSA_id:035136 AF363701 Blattabacterium punctulatus prokMSA_id:024910 AF363702 Blattabacterium punctulatus prokMSA_id:043690 AF363703 Blattabacterium punctulatus prokMSA_id:021150 AF363704 Blattabacterium punctulatus prokMSA_id:018551 AF363705 Blattabacterium punctulatus prokMSA_id:074844 AF363706 Blattabacterium punctulatus prokMSA_id:040895 AF363707 Blattabacterium punctulatus prokMSA_id:029432 AF363708 Blattabacterium punctulatus prokMSA_id:050389 AF363709 Blattabacterium punctulatus prokMSA_id:032119 AF363710 Blattabacterium punctulatus prokMSA_id:016690 AF363711 Blattabacterium punctulatus prokMSA_id:024181 AF363712 Blattabacterium punctulatus prokMSA_id:035277 AF363713 Blattabacterium punctulatus prokMSA_id:048742 AF363714 Blattabacterium clevelandi prokMSA_id:002236 X96730 Blattabacterium sp. prokMSA_id:002235 Z35664 Blattabacterium sp. 2.15.1.3.3.008 OTU 2 seqs prokMSA_id:002234 X75624 Blattabacterium sp. prokMSA_id:002233 X75625 Blattabacterium sp. 2.15.1.3.3.009 OTU 2 seqs prokMSA_id:065314 AF422602 clone t030 prokMSA_id:065313 AF422619 clone t050 2.15.1.3.3.010 OTU 4 seqs prokMSA_id:043163 AF310163 Blattabacterium sp. Cryptocercus relictus prokMSA_id:036262 AF322473 Blattabacterium sp. Cryptocercus relictus prokMSA_id:024514 AF363715 Blattabacterium relictus prokMSA_id:094150 AJ514942 Blattabacterium sp. Cryptocercus primarius 2.15.1.3.3.011 OTU 1 seq prokMSA_id:093765 AJ514944 Blattabacterium sp. Therea petiveriana 2.15.1.3.3.012 OTU 1 seq prokMSA_id:093927 AJ514945 Blattabacterium sp. Polyphaga aegyptiaca 2.15.1.3.3.999 poor quality 2 seqs prokMSA_id:002242 X75623 Blattabacterium sp. prokMSA_id:002244 X89334 clone 6911. 2.15.1.3.4 EMB.BREVIS_SUBGROUP 65 seqs 2.15.1.3.4.001 OTU 6 seqs prokMSA_id:002255 AF087043 clone BA2. prokMSA_id:037440 AF087044 BA5 prokMSA_id:023109 AF087047 BA11 prokMSA_id:039327 AF087049 BA13 prokMSA_id:045014 AF087085 BAx4 prokMSA_id:051559 AF087086 BAx5 2.15.1.3.4.002 OTU 8 seqs prokMSA_id:076430 AY162321 Ornithobacterium rhinotracheale prokMSA_id:002247 U87100 Ornithobacterium rhinotracheale str. D95-36425. prokMSA_id:002248 U87101 Ornithobacterium rhinotracheale LMG 9086 . prokMSA_id:002249 U87102 Ornithobacterium rhinotracheale LMG 11553. prokMSA_id:002250 U87103 Ornithobacterium rhinotracheale LMG 15870. prokMSA_id:002251 U87104 Ornithobacterium rhinotracheale LMG 11554. prokMSA_id:002252 U87105 Ornithobacterium rhinotracheale LMG 14578. prokMSA_id:002253 U87106 Ornithobacterium rhinotracheale LMG 11551. 2.15.1.3.4.003 OTU 1 seq prokMSA_id:028957 AJ318191 Bacteroidetes clone BIui38 2.15.1.3.4.004 OTU 1 seq prokMSA_id:041838 AF195427 CFB group kpj11rc 2.15.1.3.4.005 OTU 1 seq prokMSA_id:043899 AJ318144 Bacteroidetes clone BIhii40 2.15.1.3.4.006 OTU 2 seqs prokMSA_id:069811 AF521195 Brumimicrobium glaciale prokMSA_id:070335 AF530156 Cf. Cytophaga sp. MGP-8AN 2.15.1.3.4.007 OTU 1 seq prokMSA_id:062693 AF507867 Bacteroidetes clone ML617.5J-5 2.15.1.3.4.008 OTU 1 seq prokMSA_id:073074 AF493694 CFB group RW262 2.15.1.3.4.009 OTU 1 seq prokMSA_id:073378 AF289153 Cytophagales clone PRD01a005B 2.15.1.3.4.010 OTU 1 seq prokMSA_id:076286 AJ518814 Flavobacterium sp. B11 isolate B11 2.15.1.3.4.011 OTU 1 seq prokMSA_id:077740 AB088933 Bacteroidaceae clone:Rs-K23 2.15.1.3.4.012 OTU 1 seq prokMSA_id:078212 AY171342 clone s49 2.15.1.3.4.013 OTU 1 seq prokMSA_id:078241 AY172260 clone 2164 2.15.1.3.4.014 OTU 1 seq prokMSA_id:080317 AY161245 clone SSADM_EF11 2.15.1.3.4.015 OTU 1 seq prokMSA_id:080461 AY188293 clone KD1-131 2.15.1.3.4.016 OTU 1 seq prokMSA_id:082139 AY193956 clone SC47 2.15.1.3.4.017 OTU 1 seq prokMSA_id:082909 AY239579 clone CARB_ER2_7 2.15.1.3.4.018 OTU 2 seqs prokMSA_id:086113 AY274839 Bacteroidetes clone 1G12 prokMSA_id:083970 AY274862 Bacteroidetes clone CF92 2.15.1.3.4.019 OTU 1 seq prokMSA_id:086555 AY244936 rumen clone BE24 2.15.1.3.4.020 OTU 1 seq prokMSA_id:089519 AB113177 epsilon clone:pCIRB-12 2.15.1.3.4.021 OTU 1 seq prokMSA_id:092608 AY363052 Flavobacterium sp. VA24240/2003 2.15.1.3.4.022 OTU 1 seq prokMSA_id:097753 AY160848 clone COB P4-1 2.15.1.3.4.999 poor quality 29 seqs prokMSA_id:075491 AB075176 clone:TSRS5 prokMSA_id:019210 AF087052 B6 prokMSA_id:028325 AF268288 Cytophagales ESR 4 prokMSA_id:043832 AF298766 PL1 prokMSA_id:035265 AF428590 clone CRD99-12 prokMSA_id:035539 AF428655 clone CRP99-01 prokMSA_id:046895 AF428674 clone CRP99-20 prokMSA_id:046544 AF428727 clone CRP99-73 prokMSA_id:040474 AF429115 clone CR99-24-05 prokMSA_id:043966 AF460878 Marine SIMO-IS114 prokMSA_id:066427 AF497890 CFB group isolate WL5-12 prokMSA_id:066425 AF497892 CFB group isolate WL11-16 prokMSA_id:045464 AJ308277 clone F99_15a prokMSA_id:088931 AJ315786 clone 7 prokMSA_id:089948 AJ315787 clone 8 prokMSA_id:059252 AJ319829 SB-42-DB prokMSA_id:078346 AY171308 clone s82 prokMSA_id:086205 AY231327 clone ER2_2 prokMSA_id:087785 AY274242 Bacteroidetes isolate DGGE band GWS-AG-8 prokMSA_id:088163 AY323165 Bacteroidetes clone A115-10 prokMSA_id:091612 AY337038 Cytophagales clone SL-6b prokMSA_id:093102 AY353556 Bacteroidetes isolate DGGE gel band AB-4 prokMSA_id:002245 D14022 Empedobacter brevis IAM 14197 . prokMSA_id:002246 L19156 Ornithobacterium rhinotracheale LMG 9086 . prokMSA_id:002254 M59052 Empedobacter brevis prokMSA_id:002256 M93152 Weeksella virosa prokMSA_id:029119 Z77574 1-140 C7 prokMSA_id:043386 Z77632 2-400 C2.3 prokMSA_id:030704 Z77643 2-400 C2/2.19 2.15.1.3.5 CSB.MENINGOSEPTICUM_SUBGROUP 26 seqs 2.15.1.3.5.001 OTU 1 seq prokMSA_id:059466 AB071953 Chryseobacterium mirecola 2.15.1.3.5.002 OTU 14 seqs prokMSA_id:024059 AF207070 Chryseobacterium meningosepticum PINT prokMSA_id:036392 AF207071 Chryseobacterium meningosepticum CIP 6058 prokMSA_id:035949 AF207072 Chryseobacterium meningosepticum CIP 6059 prokMSA_id:021663 AF207073 Chryseobacterium meningosepticum CIP 7830 prokMSA_id:026365 AF207074 Chryseobacterium meningosepticum CIP 79.5 prokMSA_id:027969 AF207075 Chryseobacterium meningosepticum CIP 6057 prokMSA_id:025313 AF207076 Chryseobacterium meningosepticum AB1572 prokMSA_id:045371 AF207077 Chryseobacterium meningosepticum HO1J100 prokMSA_id:038477 AF207078 Chryseobacterium meningosepticum AMA prokMSA_id:045458 AF207079 Chryseobacterium meningosepticum GEO prokMSA_id:094931 AJ583192 CFB group clone S15D-MN4 prokMSA_id:091713 AY336568 Chryseobacterium meningosepticum strain ATCC 13253 prokMSA_id:091220 AY345404 K2-70 prokMSA_id:092559 AY360341 Chryseobacterium meningosepticum 2.15.1.3.5.003 OTU 1 seq prokMSA_id:026642 AJ318119 clone BIfcii29 2.15.1.3.5.004 OTU 1 seq prokMSA_id:032112 AF224811 clone Car82fb 2.15.1.3.5.005 OTU 2 seqs prokMSA_id:033168 AF446324 FL14C07 prokMSA_id:087582 AY293543 clone FL14C12 2.15.1.3.5.006 OTU 1 seq prokMSA_id:050473 AF228796 Flavobacterium sp. 90d clone 2 2.15.1.3.5.007 OTU 1 seq prokMSA_id:091756 AY345443 KA75 2.15.1.3.5.999 poor quality 5 seqs prokMSA_id:037289 AF102117 9284comI prokMSA_id:069881 AJ296582 DGGE band PSBAC-2 prokMSA_id:002259 D14018 Chryseobacterium meningosepticum IFO 12535 . prokMSA_id:002257 M58776 Chryseobacterium meningosepticum prokMSA_id:002258 U02896 Chryseobacterium meningosepticum ATCC 13253 . 2.15.1.3.6 CSB.BALUSTINUM_SUBGROUP 172 seqs 2.15.1.3.6.001 OTU 2 seqs prokMSA_id:002274 X67848 Chryseobacterium indologenes. prokMSA_id:002276 X67852 Chryseobacterium gleum. 2.15.1.3.6.002 OTU 1 seq prokMSA_id:002270 AF087053 clone BS1. 2.15.1.3.6.003 OTU 1 seq prokMSA_id:002269 AF181448 Riemerella columbina LMG 11607. 2.15.1.3.6.004 OTU 1 seq prokMSA_id:002268 AF050625 clone WsCH39. 2.15.1.3.6.005 OTU 1 seq prokMSA_id:002265 X67850 Flavobacterium paraogurii. 2.15.1.3.6.006 OTU 7 seqs prokMSA_id:022221 AF118416 Riemerella anatipestifer strain 4005 prokMSA_id:040904 AF118417 Riemerella anatipestifer strain 4340 prokMSA_id:024404 AF118418 Riemerella anatipestifer strain 4280 prokMSA_id:002261 U60101 Riemerella anatipestifer ATCC 11845 . prokMSA_id:036098 U60102 Riemerella anatipestifer serotype 6 strain 389/89 prokMSA_id:027022 U60103 Riemerella anatipestifer serotype 15 strain 743/85 prokMSA_id:047818 U60104 Riemerella anatipestifer serotype 19 strain 30/90 2.15.1.3.6.008 OTU 1 seq prokMSA_id:017215 U10877 Riemerella anatipestifer ATCC 11845 2.15.1.3.6.010 OTU 1 seq prokMSA_id:059536 AF538774 Enrichment culture LB-Q clone LB-Q 2.15.1.3.6.011 OTU 1 seq prokMSA_id:019397 AY038758 CFB group clone TAF-A228 2.15.1.3.6.013 OTU 2 seqs prokMSA_id:056180 AF532186 Trichloroacetic-acid-degrading TCAA1 prokMSA_id:082614 AY230767 Flavobacterium sp. 'Smarlab BioMol-2300973' 2.15.1.3.6.014 OTU 1 seq prokMSA_id:020343 AF418959 clone HTF2 2.15.1.3.6.015 OTU 1 seq prokMSA_id:020686 AY038760 CFB group clone TAF-A70 2.15.1.3.6.016 OTU 1 seq prokMSA_id:021005 AB039830 Chryseobacterium proteolyticum 2.15.1.3.6.017 OTU 6 seqs prokMSA_id:059361 AF502203 clone HP1A43 prokMSA_id:059359 AF502204 clone HP1B06 prokMSA_id:059333 AF502235 clone HP1U35 prokMSA_id:059331 AF502236 clone HP1U58 prokMSA_id:062966 AF527584 clone LPB28 prokMSA_id:055594 AF527593 clone LPU12 2.15.1.3.6.018 OTU 3 seqs prokMSA_id:059281 AJ508708 Haloanella gallinarum isolate MBRG 4.27 prokMSA_id:059279 AJ508709 Flavobacterium sp. MBRG 4.28 isolate MBRG 4.28 prokMSA_id:059277 AJ508711 Haloanella gallinarum isolate MBRG 4.29 2.15.1.3.6.019 OTU 1 seq prokMSA_id:059185 AY136085 Cytophagales strain KIN107 2.15.1.3.6.020 OTU 1 seq prokMSA_id:025881 AF375834 Chryseobacterium sp. C2+4 2.15.1.3.6.021 OTU 2 seqs prokMSA_id:027522 AF414115 Flavobacteriaceae NML no.97-0007 prokMSA_id:031516 AF414116 Flavobacteriaceae NML no.99-0049 2.15.1.3.6.022 OTU 1 seq prokMSA_id:031168 AF375837 Chryseobacterium sp. dU1 2.15.1.3.6.026 OTU 1 seq prokMSA_id:032882 AB024308 Flavobacteriaceae str. 2 2.15.1.3.6.027 OTU 6 seqs prokMSA_id:045877 AB035150 Haloanella gallinarum complete prokMSA_id:061003 AF531765 Haloanella gallinarum prokMSA_id:082022 AY204874 Candidatus Amoebinatus massiliae strain CY2301169 prokMSA_id:086598 AY244776 Haloanella gallinarum prokMSA_id:098068 AY378269 Permafrost DT-IV23 prokMSA_id:097354 AY378276 Permafrost DT-IIE30 2.15.1.3.6.028 OTU 3 seqs prokMSA_id:046641 AF344179 Flavobacterium sp. cpw707 prokMSA_id:090366 AY294611 Kaistella koreensis complete prokMSA_id:089098 AY299974 Kaistella koreensis strain Ko10 2.15.1.3.6.029 OTU 1 seq prokMSA_id:071527 AJ309324 Chryseobacterium defluvium isolate B2 2.15.1.3.6.031 OTU 1 seq prokMSA_id:060999 AF531766 Flavobacteriaceae 90B 2.15.1.3.6.032 OTU 1 seq prokMSA_id:063469 AJ495802 Chryseobacterium sp. p20H 2.15.1.3.6.033 OTU 3 seqs prokMSA_id:067365 AJ457206 Chryseobacterium sp. CPW406 prokMSA_id:063613 AY043370 Chryseobacterium sp. AU939 prokMSA_id:066857 AY096156 clone F2-12 2.15.1.3.6.035 OTU 4 seqs prokMSA_id:078016 AB074611 CFB group clone:APe4_42 prokMSA_id:064020 AB087353 clone:F15 prokMSA_id:051762 AF224844 clone Car114fc prokMSA_id:071498 AJ271009 Chryseobacterium scophthalmum strain LMG 13028 2.15.1.3.6.036 OTU 1 seq prokMSA_id:066781 AF500323 Flavobacterium sp. PF7 2.15.1.3.6.037 OTU 1 seq prokMSA_id:067485 AF493696 Flavobacteriaceae str. EP105 2.15.1.3.6.038 OTU 1 seq prokMSA_id:070367 AY038762 CFB group clone TAF-A199 2.15.1.3.6.039 OTU 1 seq prokMSA_id:071901 AY008691 Bergeyella sp. oral clone AK152 2.15.1.3.6.040 OTU 1 seq prokMSA_id:072435 AF385544 Flavobacterium-like sp. oral clone AY017 2.15.1.3.6.041 OTU 1 seq prokMSA_id:073938 AY038759 CFB group clone TAF-A144 2.15.1.3.6.042 OTU 1 seq prokMSA_id:074496 AB027704 Flavobacterium sp. B17 2.15.1.3.6.044 OTU 1 seq prokMSA_id:077694 AB074613 CFB group clone:APe2_9 2.15.1.3.6.045 OTU 2 seqs prokMSA_id:078338 AJ514443 clone AS1o4 prokMSA_id:078242 AJ514449 clone AS1o10 2.15.1.3.6.046 OTU 1 seq prokMSA_id:080005 AJ539229 Chryseobacterium sp. 010993826 strain 0109 93826 2.15.1.3.6.048 OTU 10 seqs prokMSA_id:075752 AJ519403 flavobacterium sp. clone JG37-AG-16 prokMSA_id:081364 AJ548898 clone BIOEST-9 prokMSA_id:081306 AJ548910 Bacteroidetes clone BIOEST-21 prokMSA_id:040796 AY038761 CFB group clone TAF-A87 prokMSA_id:090211 AY191341 Bacteroidetes isolate ODP1176A22X_12 prokMSA_id:081259 AY192046 Flavobacteria clone G87-GM4R prokMSA_id:087140 AY278614 Flavobacteriaceae genomosp. C1 prokMSA_id:082260 BD175053 Slime control method in paper making step of neutral paper making prokMSA_id:019452 X85207 Unknown organism 1863 strain F006 prokMSA_id:021236 X85208 Unknown organism 1863 strain F006C 2.15.1.3.6.049 OTU 1 seq prokMSA_id:081435 AJ548899 clone BIOEST-10 2.15.1.3.6.050 OTU 1 seq prokMSA_id:083130 AY244770 Chryseobacterium sp. 2002-2300129 2.15.1.3.6.051 OTU 1 seq prokMSA_id:091024 AY345495 clone W4-B50 2.15.1.3.6.052 OTU 10 seqs prokMSA_id:032560 AF217562 Chryseobacterium sp. FR2 complete prokMSA_id:032587 AF375840 Chryseobacterium sp. U3 prokMSA_id:019303 AJ271010 Chryseobacterium joosteii strain LMG 18212 prokMSA_id:094552 AJ583193 CFB group clone S15D-MN7 prokMSA_id:094828 AJ583194 CFB group clone S15D-MN101 prokMSA_id:095116 AJ583211 CFB group clone S15D-MN13 prokMSA_id:017076 AY050493 Chryseobacterium indologenes SB1 prokMSA_id:075303 AY157745 Chryseobacterium sp. kr6 prokMSA_id:087806 AY278484 Chryseobacterium jll prokMSA_id:091899 AY345551 H20 2.15.1.3.6.053 OTU 1 seq prokMSA_id:095871 AY398696 Bergeyella sp. g8498 2.15.1.3.6.054 OTU 1 seq prokMSA_id:096279 AY160846 clone COB P5-12 2.15.1.3.6.999 poor quality 81 seqs prokMSA_id:027230 AB010625 clone ASB012 prokMSA_id:040727 AB010627 clone ASB030 prokMSA_id:032079 AF058380 clone MT20 prokMSA_id:018677 AF125113 Aquatic STS_R2A_06 prokMSA_id:045449 AF128764 Soil is120 prokMSA_id:035405 AF183156 Soil isolate KBS-LC4 prokMSA_id:037899 AF183157 Soil isolate KBS-LC6 prokMSA_id:025108 AF226182 Maize root ZmrIs3AY prokMSA_id:050258 AF314436 PHOS-HE61 prokMSA_id:047076 AF353273 compost clone SSCP14d14 prokMSA_id:031776 AF353275 compost clone SSCP13d13 prokMSA_id:048960 AF375838 Chryseobacterium sp. dU3 prokMSA_id:049458 AF375843 Chryseobacterium sp. I19 prokMSA_id:033607 AF380160 Flavobacterium sp. F3 prokMSA_id:039634 AF393462 A34 prokMSA_id:043886 AF406663 Flavobacterium sp. A14 strain A14-B19 prokMSA_id:047032 AF417499 isolate DGGE band 4V344 prokMSA_id:025312 AF417505 isolate DGGE band 7V342 prokMSA_id:025192 AF417506 isolate DGGE band 7V345 prokMSA_id:050383 AF428907 clone CR98-35-25 prokMSA_id:021745 AF428908 clone CR98-35-26 prokMSA_id:035001 AF428916 clone CR98-35-34 prokMSA_id:017268 AF428917 clone CR98-35-35 prokMSA_id:031712 AF428932 clone CR98-35-50 prokMSA_id:043012 AF428944 clone CR98-35-62 prokMSA_id:077379 AF477814 clone AGCY36 prokMSA_id:068791 AF481834 Chryseobacterium sp. O-TRP2:3-2 prokMSA_id:067437 AF493304 clone pHS103 prokMSA_id:067426 AF493321 clone pHS122 prokMSA_id:067423 AF493325 clone pHS127 prokMSA_id:067418 AF493334 clone pHS138 prokMSA_id:069181 AF530948 Bacteroidetes zj05 prokMSA_id:058807 AF540041 Bacteroidetes DGGE gel band ESR BR 6 prokMSA_id:038036 AJ232881 clone LRE14 prokMSA_id:025653 AJ279493 Benzene-decomposing S8 strain S8 prokMSA_id:050804 AJ288291 Chryseobacterium indologenes isolate GR7 prokMSA_id:032964 AJ288294 Chryseobacterium indologenes isolate UK1 prokMSA_id:071003 AJ295391 Rape rhizosphere M9024 prokMSA_id:072741 AJ296581 flavobacterium DGGE band PSBAC-1 prokMSA_id:059223 AJ319864 SB-18-LD prokMSA_id:033674 AJ404533 Flavobacterium FB2 prokMSA_id:035253 AJ404535 Flavobacterium FB1 prokMSA_id:019214 AJ419646 clone R26 prokMSA_id:079880 AJ437111 clone b2-01 prokMSA_id:080536 AJ437112 clone b3-01 prokMSA_id:080076 AJ437126 clone lb4-01 prokMSA_id:080164 AJ437127 clone lb5-01 prokMSA_id:080336 AJ437132 clone lf4-01 prokMSA_id:059280 AJ508710 Flavobacterium sp. MBRG 4.26 isolate MBRG 4.26 prokMSA_id:078557 AJ534853 Chryseobacterium sp. DW3 isolate DW3 prokMSA_id:081050 AJ549927 CFB group prokMSA_id:071112 AY038757 CFB group clone TAF-A133 prokMSA_id:060543 AY054743 Chryseobacterium sp. RP1 prokMSA_id:060542 AY054744 Chryseobacterium sp. WCI prokMSA_id:066065 AY099255 clone MTU-31 prokMSA_id:070997 AY123964 S5-04 prokMSA_id:074267 AY123966 S5-38 prokMSA_id:074177 AY124462 S7-32 prokMSA_id:081618 AY187452 clone SB70 prokMSA_id:088654 AY198386 Furfural-degrading C6 prokMSA_id:087202 AY268345 clone F3 small subunit prokMSA_id:086550 AY275475 Chryseobacterium indoltheticum prokMSA_id:084695 AY275497 Flavobacteriales MSB3020 isolate MSB3020 prokMSA_id:087905 AY289198 ASI 1174 prokMSA_id:089839 AY289204 Bergeyella sp. B1-MC prokMSA_id:089903 AY315443 Chryseobacterium sp. CC-H3-2 prokMSA_id:092878 AY353697 Flavobacteriaceae 46010982-4 prokMSA_id:096326 AY378191 Extreme arid zone HX-IIF21 prokMSA_id:002271 D14016 Chryseobacterium balustinum IFO 15053 . prokMSA_id:002262 L13737 Riemerella anatipestifer. prokMSA_id:002264 M58771 Chryseobacterium balustinum prokMSA_id:002263 M58772 Chryseobacterium gleum prokMSA_id:002267 M58773 Chryseobacterium indologenes prokMSA_id:002277 M58774 Chryseobacterium indoltheticum prokMSA_id:002275 M93153 Bergeyella zoohelcum prokMSA_id:020013 U65965 Flavobacterium sp. spanning the V3-V4 region prokMSA_id:002278 X67849 Flavobacterium ogurii. prokMSA_id:002272 X84487 str. SBR1044. prokMSA_id:002266 X84566 str. SBR2024. prokMSA_id:002273 X84604 str. SBR2072. prokMSA_id:002260 X84621 str. SBR2091. 2.15.1.3.7 ENVIRONMENTAL_CLONE_1911 1 seq 2.15.1.3.7.999 poor quality 1 seq prokMSA_id:002279 X89307 clone 1911. 2.15.1.3.8 ENVIRONMENTAL_CLONE_5911_SUBGROUP 3 seqs 2.15.1.3.8.999 poor quality 3 seqs prokMSA_id:002280 X89282 clone 22a. prokMSA_id:002281 X89330 clone 5911. prokMSA_id:002282 X89332 clone 6711. 2.15.1.3.9 MY.ODORATUS_SUBGROUP 9 seqs 2.15.1.3.9.001 OTU 2 seqs prokMSA_id:002286 AJ223454 str. SS1. prokMSA_id:002285 AJ223455 str. SS2. 2.15.1.3.9.002 OTU 1 seq prokMSA_id:067272 AF495415 clone M07 2.15.1.3.9.999 poor quality 6 seqs prokMSA_id:051563 AF441963 CFB group clone CD12A11 prokMSA_id:022703 AF441991 CFB group clone CD12F6 prokMSA_id:036108 AF442008 CFB group clone CD12D1 prokMSA_id:058047 AF547422 Bacteroidetes clone CL-S77-309 prokMSA_id:002283 D14019 Myroides odoratus JCM 7458 . prokMSA_id:002284 M58777 Myroides odoratus 2.15.1.3.10 F.FLEVENSE_SUBGROUP 531 seqs 2.15.1.3.10.002 OTU 1 seq prokMSA_id:002326 AF087089 clone BS5. 2.15.1.3.10.003 OTU 1 seq prokMSA_id:002325 AB015481 Flavobacterium columnare str. PH-97028 IAM 14821. 2.15.1.3.10.004 OTU 2 seqs prokMSA_id:002324 AF142862 clone BURTON-44. prokMSA_id:022560 AF424344 CFB group MERTZ_2CM_320 2.15.1.3.10.006 OTU 4 seqs prokMSA_id:082751 AJ440998 Antarctic R-8963 strain R-8963 prokMSA_id:098800 AJ585429 Flavobacterium fryxellicola strain LMG 22022 prokMSA_id:002320 U85887 Flavobacterium sp. str. A103. prokMSA_id:002295 U85888 Flavobacterium sp. str. A265. 2.15.1.3.10.009 OTU 3 seqs prokMSA_id:002316 AF087055 clone BS3. prokMSA_id:022450 AF087062 MK12 prokMSA_id:065573 AY095388 yard-trimming-compost clone S-16 2.15.1.3.10.011 OTU 8 seqs prokMSA_id:002310 AB010951 Flavobacterium columnare str. IAM 14301. prokMSA_id:002311 AB010952 Flavobacterium columnare str. FK 401. prokMSA_id:002315 AB015480 Flavobacterium columnare str. LP 8. prokMSA_id:002312 AB016515 Flavobacterium columnare str. EK-28 IAM 14820. prokMSA_id:002317 AB023660 Flavobacterium columnare str. JIP 49/87 ATCC 49513. prokMSA_id:058640 AB078047 Flavobacterium columnare strain:IFO 15943 prokMSA_id:031594 AJ319020 Flavobacterium sp. IsoD1 isolate IsoD1 prokMSA_id:077434 AY095342 Flavobacterium columnare 2.15.1.3.10.012 OTU 1 seq prokMSA_id:002314 AF170749 str. QSSC9-3. 2.15.1.3.10.013 OTU 1 seq prokMSA_id:002313 AF170737 Gelidibacter QSSC1-21 str. QSSC1-21. 2.15.1.3.10.014 OTU 1 seq prokMSA_id:002301 AF087066 clone MK08. 2.15.1.3.10.015 OTU 1 seq prokMSA_id:002300 AF087077 clone MK06. 2.15.1.3.10.016 OTU 1 seq prokMSA_id:002299 AF090991 Flavobacterium psychrophilum ATCC 49418. 2.15.1.3.10.022 OTU 2 seqs prokMSA_id:023279 AF316791 Crater Lake CL0-37 prokMSA_id:016309 AF316792 Crater Lake CL0-114 2.15.1.3.10.025 OTU 1 seq prokMSA_id:069166 AY095407 yard-trimming-compost clone S-37 2.15.1.3.10.029 OTU 2 seqs prokMSA_id:036481 AF321037 Flavobacterium sp. GOBB3-309 prokMSA_id:017559 AF321045 Flavobacteriacea GOBB3-C103-1 2.15.1.3.10.030 OTU 3 seqs prokMSA_id:017931 AF321015 CFB group GOBB3-210 prokMSA_id:058543 AJ440996 Flavobacterium gelidilacus strain LMG 21477 prokMSA_id:058544 AJ507151 Flavobacterium gelidilacus strain LMG 21619 2.15.1.3.10.031 OTU 1 seq prokMSA_id:018528 AF087084 BAx3 2.15.1.3.10.032 OTU 1 seq prokMSA_id:018678 AF424360 CFB group MERTZ_0CM_382 2.15.1.3.10.033 OTU 3 seqs prokMSA_id:018728 AF366583 Acanthamoeba sp. K69i prokMSA_id:069855 AF493638 Flavobacterium sp. EP209 prokMSA_id:071183 AF493641 Flavobacterium sp. EP235 2.15.1.3.10.034 OTU 1 seq prokMSA_id:019183 AF417880 antarctic soil clone bh1.62 2.15.1.3.10.035 OTU 2 seqs prokMSA_id:031709 AF087045 BA6 prokMSA_id:019188 AF087048 BA12 2.15.1.3.10.036 OTU 1 seq prokMSA_id:059543 AF538743 CAGY1 strain CAGY-1 2.15.1.3.10.037 OTU 2 seqs prokMSA_id:037648 AF321008 Flavobacterium sp. GOBB3-C101 prokMSA_id:019998 AF321019 Flavobacterium sp. GOBB3-C103-3 2.15.1.3.10.038 OTU 1 seq prokMSA_id:020456 AF361205 Cytophagales clone 06 2.15.1.3.10.039 OTU 1 seq prokMSA_id:020632 AY037749 earthworm cast clone C147 2.15.1.3.10.040 OTU 1 seq prokMSA_id:020880 AF419290 antarctic soil clone bh8.55 2.15.1.3.10.041 OTU 2 seqs prokMSA_id:027757 AF259601 CFB group CtaxAus-7 prokMSA_id:021140 AF259602 CFB group CtaxAus-22 2.15.1.3.10.042 OTU 1 seq prokMSA_id:021369 AJ318198 Bacteroidetes clone BIwi5 2.15.1.3.10.045 OTU 1 seq prokMSA_id:021882 AF260322 Spd2B_4 2.15.1.3.10.046 OTU 1 seq prokMSA_id:059360 AF502205 clone HP1A39 2.15.1.3.10.048 OTU 3 seqs prokMSA_id:052496 AJ319015 Flavobacterium sp. IsoA1 isolate IsoA1 prokMSA_id:040777 AJ319017 Flavobacterium sp. IsoB1 isolate IsoB1 prokMSA_id:023404 AJ319018 Flavobacterium sp. IsoC1 isolate IsoC1 2.15.1.3.10.049 OTU 1 seq prokMSA_id:023658 AF277560 SIC.B8232 2.15.1.3.10.050 OTU 1 seq prokMSA_id:023950 AF236016 CFB group A0653 2.15.1.3.10.051 OTU 1 seq prokMSA_id:024397 AJ320489 isolate BUG-82 2.15.1.3.10.052 OTU 1 seq prokMSA_id:069469 AF388891 Flavobacteriaceae clone GOBB3-CL292 2.15.1.3.10.053 OTU 1 seq prokMSA_id:024506 AJ252632 Agricultural soil clone SC-I-38 2.15.1.3.10.054 OTU 1 seq prokMSA_id:025055 AF087051 BA9 2.15.1.3.10.055 OTU 1 seq prokMSA_id:025476 AY038745 CFB group clone TAF-A35 2.15.1.3.10.056 OTU 1 seq prokMSA_id:027332 AF388901 Pseudomonas sp. clone GOBB3-CL93 2.15.1.3.10.057 OTU 1 seq prokMSA_id:027491 AF417885 antarctic soil clone bh2.35 2.15.1.3.10.060 OTU 2 seqs prokMSA_id:032751 AJ319019 Flavobacterium sp. IsoC2 isolate IsoC2 prokMSA_id:028744 AJ319021 Flavobacterium sp. IsoD2 isolate IsoD2 2.15.1.3.10.061 OTU 1 seq prokMSA_id:028824 AY038747 CFB group clone TAF-A174 2.15.1.3.10.062 OTU 1 seq prokMSA_id:030501 AF289167 Cytophagales clone PRD01b007B 2.15.1.3.10.063 OTU 2 seqs prokMSA_id:031130 AB066236 Flavobacterium sp. PJ711 prokMSA_id:068616 AY081986 clone KRA30+19 2.15.1.3.10.064 OTU 1 seq prokMSA_id:056084 AF502206 clone HP1B29 2.15.1.3.10.065 OTU 1 seq prokMSA_id:031371 AJ318141 Bacteroidetes clone BIhi40 2.15.1.3.10.068 OTU 3 seqs prokMSA_id:058643 AB078043 Flavobacterium johnsoniae strain:IFO 15970 prokMSA_id:033592 AF217563 Flexibacter sp. FR1 prokMSA_id:041509 AF220307 O11D1 2.15.1.3.10.071 OTU 1 seq prokMSA_id:068805 AF388900 Flavobacterium sp. clone GOBB3-CL208 2.15.1.3.10.072 OTU 1 seq prokMSA_id:038131 AF388898 Flavobacterium sp. clone GOBB3-CL159 2.15.1.3.10.075 OTU 1 seq prokMSA_id:038576 AF375830 Flexibacter sp. clone C4 2.15.1.3.10.076 OTU 1 seq prokMSA_id:039169 AF236015 CFB group A1002 2.15.1.3.10.077 OTU 1 seq prokMSA_id:039294 AF361197 Cytophagales clone 15 2.15.1.3.10.078 OTU 1 seq prokMSA_id:039414 AF087072 MK18 2.15.1.3.10.079 OTU 1 seq prokMSA_id:039496 AJ318155 Bacteroidetes clone BIjiii34 2.15.1.3.10.081 OTU 1 seq prokMSA_id:040061 AJ307948 mRNA clone sipK12 2.15.1.3.10.082 OTU 1 seq prokMSA_id:040092 AF417900 antarctic soil clone bh3.26 2.15.1.3.10.083 OTU 1 seq prokMSA_id:040807 AF321043 Flavobacterium sp. GOBB3-C108 2.15.1.3.10.084 OTU 87 seqs prokMSA_id:052347 AB075230 Flavobacterium sp. ST-82 prokMSA_id:036697 AB075231 Flavobacterium sp. ST-10 prokMSA_id:034165 AB075232 Flavobacterium sp. ST-92 prokMSA_id:058629 AB078060 Flavobacterium psychrophilum strain:IFO 15942 prokMSA_id:002327 AF030380 Flavobacterium xanthum ACAM 81. prokMSA_id:002297 AF142841 Flavobacterium BURTON-22. prokMSA_id:002296 AF145849 clone K20-54. prokMSA_id:038264 AF150713 Elbe River snow isolate Iso8 prokMSA_id:002298 AF162266 Flavobacterium frigidarium complete prokMSA_id:037537 AF214140 P16L841 prokMSA_id:042564 AF214141 P2G231 prokMSA_id:028033 AF235124 Cytophaga sp. KT0234A prokMSA_id:048501 AF260716 Cytophaga sp. P1 prokMSA_id:022760 AF277542 Flavobacterium SIC.ARCTIC.156 prokMSA_id:019061 AF321009 Flavobacterium sp. GOBB3-208 prokMSA_id:032387 AF336355 Flavobacterium sp. Wuba46 prokMSA_id:027830 AF366582 Acanthamoeba sp. KHLA1 prokMSA_id:044287 AF433172 Flavobacterium xinjiangensis As1.2748 prokMSA_id:030411 AF433173 Flavobacterium xinjiangensis AS1.2749 prokMSA_id:017527 AF433174 Flavobacterium omnivorum As1.2747 prokMSA_id:079763 AF468412 Arctic sea ice ARK10104 prokMSA_id:080970 AF468423 Arctic sea ice ARK10159 prokMSA_id:080488 AF468424 Arctic sea ice ARK10161 prokMSA_id:080779 AF468431 Arctic sea ice ARK10270 prokMSA_id:080173 AF468432 Arctic sea ice associated ARK10272 prokMSA_id:080159 AF468434 Arctic sea ice ARK10287 prokMSA_id:067586 AF493636 Flavobacterium sp. EP037 prokMSA_id:055706 AF493639 Flavobacterium sp. EP223 prokMSA_id:070674 AF493642 Flavobacterium sp. EP236 prokMSA_id:071528 AF493643 Flavobacterium sp. EP240 prokMSA_id:070214 AF493644 Flavobacterium sp. EP241 prokMSA_id:071429 AF493646 Flavobacterium sp. EP251 prokMSA_id:067581 AF493647 Flavobacterium sp. EP252 prokMSA_id:073309 AF493648 Flavobacterium sp. EP100 prokMSA_id:073010 AF493649 Flavobacterium sp. EP101 prokMSA_id:069846 AF493651 Flavobacterium sp. EP306 prokMSA_id:055662 AF493652 Flavobacterium sp. EP134 prokMSA_id:069763 AF493654 Flavobacterium sp. EP040 prokMSA_id:071583 AF493656 Flavobacterium sp. EP204 prokMSA_id:074373 AF493657 Flavobacterium sp. EP215 prokMSA_id:069915 AF493658 Flavobacterium sp. EP217 prokMSA_id:067573 AF493659 Flavobacterium sp. EP239 prokMSA_id:070473 AF493660 Flavobacterium sp. EP246 prokMSA_id:073277 AF493661 Flavobacterium sp. EP286 prokMSA_id:069817 AF493662 Flavobacterium sp. EP300 prokMSA_id:067571 AF493666 Flavobacterium sp. EP136 prokMSA_id:067568 AF493667 Flavobacterium sp. EP360 prokMSA_id:067491 AF493695 Flavobacterium sp. SW254 prokMSA_id:066279 AF506068 Flavobacterium sp. LCSAOTU28 prokMSA_id:069711 AF529117 Bacteroidetes clone FTLM155 prokMSA_id:060350 AF534192 clone Glu1 prokMSA_id:085662 AF534436 Flavobacteria clone TLM12 prokMSA_id:016795 AJ252635 Agricultural soil clone SC-I-41 prokMSA_id:029454 AJ252668 Agricultural soil clone SC-I-93 prokMSA_id:043638 AJ295520 rape rhizosphere wr0076 prokMSA_id:041560 AJ297440 Flavobacterium aff. xylanivorum A1/C-aer/OIV prokMSA_id:039515 AJ319016 Flavobacterium sp. IsoA2 isolate IsoA2 prokMSA_id:085147 AJ440979 Antarctic R-7550 strain R-7550 prokMSA_id:084602 AJ440981 Antarctic R-7579 strain R-7579 prokMSA_id:084396 AJ440987 Antarctic R-7933 strain R-7933 prokMSA_id:083757 AJ440988 Antarctic R-8022 strain R-8022 prokMSA_id:085358 AJ441000 Antarctic R-9003 strain R-9003 prokMSA_id:084445 AJ441005 Antarctic R-9122 strain R-9122 prokMSA_id:093577 AJ551150 Cytophaga sp. An11 isolate An11 prokMSA_id:093705 AJ551174 Cytophaga sp. An36 isolate An36 prokMSA_id:087141 AJ557886 Flavobacterium degerlachei strain LMG 21915 prokMSA_id:087289 AJ557887 Flavobacterium frigoris strain LMG 21922 prokMSA_id:088003 AJ557888 Flavobacterium micromati strain LMG 21919 prokMSA_id:096230 AJ585427 Flavobacterium psychrolimnae strain LMG 22020 prokMSA_id:095461 AJ585428 Flavobacterium psychrolimnae strain LMG 22018 prokMSA_id:095581 AJ601392 Flavobacterium xanthum 16SrRNA strain R-9010 prokMSA_id:095849 AJ601393 Flavobacterium frigoris 16SrRNA strain R-7518 prokMSA_id:059129 AY121831 clone P-1R prokMSA_id:073504 AY124338 CS112 prokMSA_id:073825 AY124339 CS910 prokMSA_id:060860 AY135911 clone SG2-77 prokMSA_id:076726 AY154638 earthworm cast clone c298 prokMSA_id:081617 AY167338 Bacteroidetes ARK10264 prokMSA_id:086223 AY274854 Bacteroidetes clone CF39 prokMSA_id:088681 AY313920 Flavobacterium sp. clone P80-1 prokMSA_id:090219 AY313921 Flavobacterium sp. clone P80-19 prokMSA_id:088948 AY315160 Glacier FJS20 prokMSA_id:095799 AY378241 Glacial ice MS-T2-11 prokMSA_id:096803 AY378255 Permafrost DT-IH11 prokMSA_id:097367 AY378274 Permafrost DT-IIA04 prokMSA_id:002319 L39067 Flavobacterium hibernum ATCC 51468 . prokMSA_id:073974 L39067 Flavobacterium hibernum 2.15.1.3.10.085 OTU 1 seq prokMSA_id:043553 AF087056 BS7 2.15.1.3.10.086 OTU 1 seq prokMSA_id:044265 AJ289998 FukuN36 2.15.1.3.10.087 OTU 1 seq prokMSA_id:072415 AF502240 clone HP1U61 2.15.1.3.10.088 OTU 1 seq prokMSA_id:044565 AY038744 CFB group clone TAF-A168 2.15.1.3.10.089 OTU 1 seq prokMSA_id:044589 AY038751 CFB group clone TAF-A38 2.15.1.3.10.090 OTU 1 seq prokMSA_id:044727 AF321042 Flavobacterium sp. GOBB3-109 2.15.1.3.10.092 OTU 9 seqs prokMSA_id:058641 AB078045 Flexibacter aurantiacus subsp. excathedrus strain:IFO 16024 prokMSA_id:020785 AF349726 Flavobacterium sp. Sun4 prokMSA_id:064007 AJ491824 Flavobacterium columnare strain B2 prokMSA_id:065551 AY095410 yard-trimming-compost clone S-41 prokMSA_id:064435 AY102887 clone BCM1-5B prokMSA_id:057759 AY154889 Flavobacterium sp. SR1 prokMSA_id:057760 AY154890 Flavobacterium sp. BR1 prokMSA_id:057758 AY154891 Flavobacterium sp. SC1 prokMSA_id:002323 X85210 Cytophaga sp. str. 0092. 2.15.1.3.10.093 OTU 1 seq prokMSA_id:046038 AF277543 ARCTIC.16 2.15.1.3.10.094 OTU 1 seq prokMSA_id:046285 AF142873 BURTON-55 2.15.1.3.10.095 OTU 1 seq prokMSA_id:047437 AF321046 CFB group GOBB3-308 2.15.1.3.10.096 OTU 1 seq prokMSA_id:048020 AF424356 CFB group MERTZ_0CM_293 2.15.1.3.10.097 OTU 1 seq prokMSA_id:048592 AF277520 SIC.946 2.15.1.3.10.098 OTU 1 seq prokMSA_id:051596 AF087083 BAx1 2.15.1.3.10.099 OTU 1 seq prokMSA_id:052052 AF321014 CFB group GOBB3-317_2 2.15.1.3.10.100 OTU 1 seq prokMSA_id:052923 AF388897 Flavobacterium sp. clone GOBB3-CL141 2.15.1.3.10.101 OTU 1 seq prokMSA_id:054242 AJ252729 Potato plant root clone RC-III-71 2.15.1.3.10.102 OTU 1 seq prokMSA_id:059796 AY133393 clone OB3_227 2.15.1.3.10.103 OTU 1 seq prokMSA_id:059798 AY133392 clone BB2_226 2.15.1.3.10.104 OTU 1 seq prokMSA_id:060733 AF414444 Cytophaga sp. SA1 complete 2.15.1.3.10.105 OTU 1 seq prokMSA_id:060844 AY135929 clone SG2-139 2.15.1.3.10.106 OTU 1 seq prokMSA_id:060865 AY135908 clone SG2-55 2.15.1.3.10.107 OTU 1 seq prokMSA_id:060866 AY135906 clone SG2-42 2.15.1.3.10.108 OTU 1 seq prokMSA_id:062957 AF527595 clone LPU28 2.15.1.3.10.109 OTU 1 seq prokMSA_id:065530 AY095433 yard-trimming-compost clone S-72 2.15.1.3.10.110 OTU 1 seq prokMSA_id:065531 AY095438 yard-trimming-compost clone S-79 2.15.1.3.10.111 OTU 1 seq prokMSA_id:065535 AY095424 yard-trimming-compost clone S-59 2.15.1.3.10.112 OTU 1 seq prokMSA_id:065547 AY095414 yard-trimming-compost clone S-47 2.15.1.3.10.113 OTU 1 seq prokMSA_id:065549 AY095413 yard-trimming-compost clone S-45 2.15.1.3.10.114 OTU 1 seq prokMSA_id:065561 AY095401 yard-trimming-compost clone S-30 2.15.1.3.10.115 OTU 1 seq prokMSA_id:065581 AY095379 yard-trimming-compost clone S-5 2.15.1.3.10.116 OTU 1 seq prokMSA_id:065585 AY095375 yard-trimming-compost clone S-1 2.15.1.3.10.117 OTU 1 seq prokMSA_id:066512 AY100572 clone cvf63053 2.15.1.3.10.118 OTU 2 seqs prokMSA_id:070207 AF493640 Flavobacterium sp. EP233 prokMSA_id:067577 AF493653 Flavobacterium sp. EP372 2.15.1.3.10.119 OTU 1 seq prokMSA_id:068626 AY081974 clone KRA30+03 2.15.1.3.10.120 OTU 2 seqs prokMSA_id:070652 AF493650 Flavobacterium sp. EP297 prokMSA_id:071261 AF493663 Flavobacterium sp. EP328 2.15.1.3.10.121 OTU 1 seq prokMSA_id:071270 AY145539 Flavobacteriales CF-1 2.15.1.3.10.122 OTU 1 seq prokMSA_id:071465 AF493655 Flavobacterium sp. EP125 2.15.1.3.10.123 OTU 1 seq prokMSA_id:071577 AF289165 Cytophagales clone PRD01b005B 2.15.1.3.10.124 OTU 1 seq prokMSA_id:071870 AF493645 Flavobacterium sp. EP248 2.15.1.3.10.125 OTU 1 seq prokMSA_id:071925 AF493635 Flavobacterium sp. EP030 2.15.1.3.10.126 OTU 1 seq prokMSA_id:072366 AY038756 CFB group clone TAF-B87 2.15.1.3.10.127 OTU 1 seq prokMSA_id:072403 AY102905 clone BCM3S-1B 2.15.1.3.10.128 OTU 1 seq prokMSA_id:072573 AY038753 CFB group clone TAF-A188 2.15.1.3.10.129 OTU 1 seq prokMSA_id:072716 AY095380 yard-trimming-compost clone S-8 2.15.1.3.10.130 OTU 1 seq prokMSA_id:072799 AJ319024 Flavobacterium sp. IsoE1 isolate IsoE1 2.15.1.3.10.131 OTU 1 seq prokMSA_id:073509 AF493664 Flavobacterium sp. EP333 2.15.1.3.10.132 OTU 1 seq prokMSA_id:073721 AF493637 Flavobacterium sp. EP130 2.15.1.3.10.133 OTU 1 seq prokMSA_id:074458 AY095429 yard-trimming-compost clone S-65 2.15.1.3.10.134 OTU 1 seq prokMSA_id:075030 AY159130 MF_clone_12 2.15.1.3.10.135 OTU 1 seq prokMSA_id:075119 AY163576 Croceibacter atlanticus strain HTCC2559T 2.15.1.3.10.136 OTU 1 seq prokMSA_id:075214 AY154548 earthworm intestine clone lw36 2.15.1.3.10.137 OTU 1 seq prokMSA_id:075410 AY154598 earthworm cast clone c242 2.15.1.3.10.138 OTU 1 seq prokMSA_id:076123 AJ534682 bacteroidetes clone S15A-MN27 2.15.1.3.10.139 OTU 1 seq prokMSA_id:076640 AY154547 earthworm intestine clone lw35 2.15.1.3.10.140 OTU 1 seq prokMSA_id:077276 AJ318907 Earthworm gut ED5 2.15.1.3.10.141 OTU 1 seq prokMSA_id:077602 AB074609 CFB group clone:APe4_4 2.15.1.3.10.142 OTU 2 seqs prokMSA_id:084227 AJ440977 Antarctic R-7515 strain R-7515 prokMSA_id:078511 AY177766 Flavobacterium sp. isolate 5G24 2.15.1.3.10.143 OTU 1 seq prokMSA_id:079592 AB071382 Vladibacter vitellinus 2.15.1.3.10.144 OTU 1 seq prokMSA_id:080437 AF468425 Arctic sea ice ARK10164 2.15.1.3.10.145 OTU 1 seq prokMSA_id:081822 AY165587 Arctic sea ice clone ARKXV/1-139 2.15.1.3.10.146 OTU 1 seq prokMSA_id:082527 AJ440991 Antarctic R-8282 strain R-8282 2.15.1.3.10.147 OTU 1 seq prokMSA_id:082700 AJ441001 Antarctic R-9033 strain R-9033 2.15.1.3.10.148 OTU 1 seq prokMSA_id:083488 AY238333 Cf. Cytophaga sp. MDA2507 2.15.1.3.10.149 OTU 1 seq prokMSA_id:083993 AF321038 Flavobacterium sp. GOBB3-209 2.15.1.3.10.150 OTU 1 seq prokMSA_id:084320 AJ440984 Antarctic R-7666 strain R-7666 2.15.1.3.10.151 OTU 1 seq prokMSA_id:085803 AY239567 clone CARB_ER1_17 2.15.1.3.10.152 OTU 1 seq prokMSA_id:086481 AY214613 Bacteroidetes clone SL2-1-G10 2.15.1.3.10.153 OTU 2 seqs prokMSA_id:086874 AY279053 clone CS011 prokMSA_id:087540 AY279068 clone CS045 2.15.1.3.10.154 OTU 1 seq prokMSA_id:088314 AY321386 clone K102 2.15.1.3.10.155 OTU 1 seq prokMSA_id:088618 AY315159 Glacier FJS32 2.15.1.3.10.156 OTU 1 seq prokMSA_id:091181 AY345400 G21 2.15.1.3.10.157 OTU 1 seq prokMSA_id:091330 AY345505 clone W4A-G04 2.15.1.3.10.158 OTU 1 seq prokMSA_id:095261 AJ585236 Flavobacterium limicola 2.15.1.3.10.159 OTU 1 seq prokMSA_id:096316 AJ585230 Flavobacterium sp. PS-IrrK3 strain PS-IrrK3 2.15.1.3.10.160 OTU 1 seq prokMSA_id:096754 AJ585227 Flavobacterium johnsoniae 2.15.1.3.10.161 OTU 1 seq prokMSA_id:098870 AJ585234 Bacteroidetes PS-T12W strain PS-T12W 2.15.1.3.10.999 poor quality 272 seqs prokMSA_id:026940 AB008041 Flavobacterium sp. A16 prokMSA_id:019982 AB008042 Flavobacterium sp. A17 prokMSA_id:047972 AB008043 Flavobacterium sp. A43 prokMSA_id:076575 AB075137 clone:TCRS4 prokMSA_id:075294 AB075138 clone:TCRS5 prokMSA_id:076796 AB075139 clone:TCRS6 prokMSA_id:075018 AB075140 clone:TCRS7 prokMSA_id:077258 AB075142 clone:TCRS9 prokMSA_id:076039 AB075148 clone:TCRS15 prokMSA_id:077083 AB075149 clone:TCRS16 prokMSA_id:077209 AB075151 clone:TCR2 prokMSA_id:075225 AB075152 clone:TCR3 prokMSA_id:076509 AB075155 clone:TCR6 prokMSA_id:075511 AB075156 clone:TCR7 prokMSA_id:076781 AB075157 clone:TCR8 prokMSA_id:075341 AB075160 clone:TCR11 prokMSA_id:075084 AB075161 clone:TCR12 prokMSA_id:074897 AB075162 clone:TCR14 prokMSA_id:075986 AB075163 clone:TCR15 prokMSA_id:076211 AB075164 clone:TCR16 prokMSA_id:076012 AB075165 clone:TCR17 prokMSA_id:076148 AB075178 clone:TSRS7 prokMSA_id:076820 AB075180 clone:TSRS12 prokMSA_id:075069 AB075183 clone:TSR3 prokMSA_id:076295 AB075184 clone:TSR4 prokMSA_id:074918 AB075185 clone:TSR5 prokMSA_id:076842 AB075186 clone:TSR6 prokMSA_id:075427 AB075189 clone:TSR9 prokMSA_id:076991 AB075192 clone:TSR14 prokMSA_id:093581 AB118679 Bacteroidetes C-7 strain:C-7 prokMSA_id:050536 AF010099 prokMSA_id:017201 AF010108 prokMSA_id:021081 AF025552 Cytophagales str. MED9 prokMSA_id:020231 AF055224 marine pC2-105 3' prokMSA_id:029193 AF060533 Flavobacterium succinicans prokMSA_id:036707 AF078233 Grassland soil clone saf2_118 prokMSA_id:016409 AF078355 Grassland soil clone sl1_218 prokMSA_id:035793 AF087050 BA8 prokMSA_id:029776 AF087063 MK02 prokMSA_id:042174 AF087080 MK17 prokMSA_id:037050 AF087088 BS4 prokMSA_id:042472 AF114665 cytophaga DCM-FREE-10 prokMSA_id:040734 AF128746 Soil ic038 prokMSA_id:041062 AF141451 Cytophagales clone CRE-FL24 prokMSA_id:049366 AF141452 Cytophagales clone CRE-FL25 prokMSA_id:051966 AF141466 Cytophagales clone CRE-FL46 prokMSA_id:036115 AF141515 Cytophagales clone CRE-PA32 prokMSA_id:033087 AF141519 Cytophagales clone CRE-PA38 prokMSA_id:034416 AF142950 TAYNAYA-4 prokMSA_id:048533 AF175597 WJGRT-32 prokMSA_id:028493 AF175615 WJGRT-72 prokMSA_id:049570 AF182021 Cytophaga sp. BAL50 prokMSA_id:077469 AF188876 14A1 prokMSA_id:032292 AF255634 clone Ebpr10 prokMSA_id:073112 AF259600 CFB group CtaxAus-4 prokMSA_id:038430 AF261064 Flavobacterium sp. SKA43 prokMSA_id:054979 AF270941 clone IAFR4 prokMSA_id:020017 AF270946 clone IAFR118 prokMSA_id:034930 AF273319 IAFESA5 prokMSA_id:046859 AF273321 IAFESB3 prokMSA_id:044388 AF283861 Arctic sea ice AWS-4M3 prokMSA_id:028478 AF283862 Arctic sea ice AWS-4M7 prokMSA_id:035142 AF283863 Arctic sea ice AWS-4M4 prokMSA_id:074220 AF289166 Cytophagales clone PRD01b006B prokMSA_id:028080 AF289886 Cytophagales Kmlps3-10 prokMSA_id:029672 AF311999 Flavobacterium johnsoniae a2b prokMSA_id:045616 AF312000 Flavobacterium johnsoniae a5 prokMSA_id:051492 AF312001 Flavobacterium johnsoniae a6ag prokMSA_id:052353 AF312002 Flavobacterium johnsoniae a20 prokMSA_id:033443 AF312003 Flavobacterium johnsoniae a27 prokMSA_id:042844 AF312004 Flavobacterium johnsoniae a38g prokMSA_id:032214 AF312005 Flavobacterium xanthum O31 prokMSA_id:037570 AF312006 Flavobacterium xanthum axD2 prokMSA_id:039074 AF321044 Flavobacterium sp. GOBB3-108 prokMSA_id:068128 AF365608 clone BT60MF7BB8 prokMSA_id:068103 AF365632 clone BM89DS1BA3 prokMSA_id:067983 AF365777 clone BM89PA1BA4 prokMSA_id:046708 AF367241 clone PDS7 prokMSA_id:031611 AF367848 Km4 prokMSA_id:042095 AF375831 Cytophaga sp. clone F1 prokMSA_id:048727 AF379024 clone EV10 prokMSA_id:040131 AF392707 clone LEF7 prokMSA_id:035054 AF392708 clone LEG11 prokMSA_id:029071 AF417916 antarctic soil clone bh5.7 prokMSA_id:017272 AF419195 antarctic soil clone bh5.22 prokMSA_id:067629 AF427162 Cytophaga sp. 24-25 prokMSA_id:030567 AF428610 clone CRD99-32 prokMSA_id:037557 AF428627 clone CRD99-49 prokMSA_id:041958 AF428696 clone CRP99-42 prokMSA_id:031025 AF428744 clone CR98-5-14 prokMSA_id:029605 AF428748 clone CR98-5-18 prokMSA_id:022740 AF429040 clone CR99-7-06 prokMSA_id:049791 AF429080 clone CR99-7-46 prokMSA_id:036301 AF429100 clone CR99-7-66 prokMSA_id:032260 AF429153 clone CR99-24-43 prokMSA_id:025756 AF429200 clone CR99-2-14 prokMSA_id:016847 AF429206 clone CR99-2-20 prokMSA_id:030792 AF429213 clone CR99-2-27 prokMSA_id:049742 AF429227 clone CR99-2-41 prokMSA_id:035944 AF440287 clone PO7 prokMSA_id:081894 AF466706 CFB group clone DBS3 prokMSA_id:077513 AF477808 CFB group clone AGCM39 prokMSA_id:077311 AF477809 CFB group clone AGCY53 prokMSA_id:077367 AF477810 CFB group clone AGCO52 prokMSA_id:077479 AF477815 CFB group clone AGCY44 prokMSA_id:077330 AF477816 CFB group clone AGCY18 prokMSA_id:077283 AF477817 CFB group clone AGCY23 prokMSA_id:068795 AF481829 Flavobacterium sp. TRP9:2-2 prokMSA_id:068796 AF481830 Flavobacterium sp. O-TRP6:1-2 prokMSA_id:070404 AF493665 Flavobacterium sp. EP131 prokMSA_id:069715 AF530945 Bacteroidetes zj02 prokMSA_id:073968 AF530973 Bacteroidetes so23 prokMSA_id:072191 AF530976 Bacteroidetes so40 prokMSA_id:069187 AF530987 Bacteroidetes wo21 prokMSA_id:055392 AF530990 Beta wo35 prokMSA_id:072697 AF531002 Bacteroidetes zo31 prokMSA_id:071538 AF531005 Bacteroidetes zo34 prokMSA_id:072281 AF531022 Bacteroidetes Mwo1 prokMSA_id:055891 AF541927 Flavobacterium sp. MF66 prokMSA_id:059138 AF542202 Bacteroidetes 11B prokMSA_id:058057 AF547409 Bacteroidetes clone CL-S77-296 prokMSA_id:046429 AJ005989 clone TBS22 prokMSA_id:041250 AJ009712 isolate K66 prokMSA_id:041895 AJ232807 clone TRE23 prokMSA_id:021063 AJ232808 clone TRE22 prokMSA_id:023213 AJ232834 clone LBS24 prokMSA_id:020182 AJ232835 clone LBS17 prokMSA_id:050331 AJ287671 CFB-group 204ev prokMSA_id:028127 AJ287672 CFB-group 42ev prokMSA_id:044447 AJ287673 CFB-group 240ev prokMSA_id:019700 AJ287674 CFB-group 421ev prokMSA_id:052525 AJ288288 Flavobacterium saccharophilum isolate GR4 prokMSA_id:026726 AJ288289 Flavobacterium saccharophilum isolate GR5 prokMSA_id:029240 AJ308288 clone F99_26 prokMSA_id:032353 AJ309968 dtb25 prokMSA_id:024198 AJ314667 clone slf262 prokMSA_id:039047 AJ319005 flavobacterium sp. clone A1 prokMSA_id:020304 AJ319006 flavobacterium sp. clone A2 prokMSA_id:032081 AJ319007 flavobacterium sp. clone B1 prokMSA_id:018467 AJ319008 flavobacterium sp. clone C1 prokMSA_id:044775 AJ319009 flavobacterium sp. clone C2 prokMSA_id:035333 AJ319010 flavobacterium sp. clone D1 prokMSA_id:048724 AJ319011 flavobacterium sp. clone D2 prokMSA_id:049439 AJ319014 flavobacterium sp. clone E1 prokMSA_id:055463 AJ416216 clone Sta2-52 prokMSA_id:051527 AJ416655 CFB group clone env.S036 prokMSA_id:024235 AJ419638 clone R15 prokMSA_id:069816 AJ419639 clone R16 prokMSA_id:025973 AJ419650 clone R30 prokMSA_id:038107 AJ431324 CFB group clone 2_8a prokMSA_id:029717 AJ431325 CFB group clone 2_8b prokMSA_id:079972 AJ437124 clone lb2-01 prokMSA_id:080208 AJ437125 clone lb3-01 prokMSA_id:059118 AJ440504 Flavobacterium sp. BH11.5 isolate BH11.5 prokMSA_id:070035 AJ440507 Flavobacterium sp. BH12.12 isolate BH12.12 prokMSA_id:055361 AJ504485 isolate P1CN14 prokMSA_id:056851 AJ518756 clone Sai4P3-92 prokMSA_id:095251 AJ585228 Flavobacterium sp. PS-WolfK1 strain PS-WolfK1 prokMSA_id:095408 AJ585235 Flavobacterium sp. PS-SwaK4 strain PS-SwaK4 prokMSA_id:022147 AY029188 clone PDS7 prokMSA_id:049546 AY030101 BD small subunit prokMSA_id:037929 AY030102 BE small subunit prokMSA_id:031676 AY037560 soil clone S007 prokMSA_id:020023 AY037572 soil clone S026 prokMSA_id:027973 AY037623 soil clone S106 prokMSA_id:040936 AY037695 earthworm cast clone C042 prokMSA_id:051731 AY037697 earthworm cast clone C044 prokMSA_id:027003 AY037710 earthworm cast clone C060 prokMSA_id:035979 AY037721 earthworm cast clone C072 prokMSA_id:029736 AY037735 earthworm cast clone C132 prokMSA_id:025386 AY038398 Flavobacteriaceae clone CD5E11 prokMSA_id:034998 AY038399 Flavobacteriaceae clone CD5E3 prokMSA_id:074134 AY038746 CFB group clone TAF-A84 prokMSA_id:071673 AY038748 CFB group clone TAF-A67 prokMSA_id:074260 AY038749 CFB group clone TAF-A86 prokMSA_id:071114 AY038750 CFB group clone TAF-A187 prokMSA_id:040826 AY038752 CFB group clone TAF-A191 prokMSA_id:073386 AY038754 CFB group clone TAF-A120 prokMSA_id:018873 AY039832 Cytophaga sp. jshs1 prokMSA_id:050818 AY039833 Flavobacterium sp. jshs1 prokMSA_id:029989 AY048915 Q3-13B5 prokMSA_id:050288 AY048918 Q3-1B4 prokMSA_id:059126 AY121829 clone P-39 prokMSA_id:073284 AY123962 S7-02 prokMSA_id:062427 AY123967 S5-28 prokMSA_id:055985 AY135862 clone SG1-7 prokMSA_id:060898 AY135872 clone SG1-54 prokMSA_id:060895 AY135877 clone SG1-80 prokMSA_id:059196 AY136073 Cytophagales strain KIN30 prokMSA_id:055699 AY144268 Flavobacterium sp. LTUCFB01914 prokMSA_id:069750 AY144269 Flavobacterium sp. LTUCFB02256 prokMSA_id:071743 AY144270 Flavobacterium sp. LTUCFB02514 prokMSA_id:074414 AY144271 Flavobacterium sp. LTUCFB02914 prokMSA_id:069880 AY144272 Flavobacterium sp. LTUCFB03914 prokMSA_id:072248 AY144273 Flavobacterium sp. LTUCFB04256 prokMSA_id:069174 AY144274 Flavobacterium sp. LTUCFB04314 prokMSA_id:073323 AY144275 Flavobacterium sp. LTUCFB04614 prokMSA_id:069407 AY144277 Flavobacterium sp. LTUCFB05514 prokMSA_id:074003 AY144278 Flavobacterium sp. LTUCFB05714 prokMSA_id:074140 AY144279 Flavobacterium sp. LTUCFB05914 prokMSA_id:074251 AY144280 Flavobacterium sp. LTUCFB06314 prokMSA_id:074009 AY144281 Flavobacterium sp. LTUCFB06914 prokMSA_id:056446 AY144282 Flavobacterium sp. LTUCFB07414 prokMSA_id:056183 AY144283 Flavobacterium sp. LTUCFB08014 prokMSA_id:069520 AY144284 Flavobacterium sp. LTUCFB08156 prokMSA_id:069198 AY144285 Flavobacterium sp. LTUCFB08314 prokMSA_id:055317 AY144286 Flavobacterium sp. LTUCFB08614 prokMSA_id:069621 AY144287 Flavobacterium sp. LTUCFB08814 prokMSA_id:069645 AY144288 Flavobacterium sp. LTUCFB10014 prokMSA_id:071017 AY144289 Flavobacterium sp. LTUCFB10814 prokMSA_id:072862 AY144290 Flavobacterium sp. LTUCFB11314 prokMSA_id:069640 AY144291 Flavobacterium sp. LTUCFB11414 prokMSA_id:070815 AY144292 Flavobacterium sp. LTUCFB00314 prokMSA_id:069673 AY145597 CFB group clone DC8-0-3 prokMSA_id:096570 AY147373 Flavobacteriales Wu11 prokMSA_id:096023 AY147383 Flavobacteriales Wd11 prokMSA_id:096285 AY147387 Flavobacteriales Wd21 prokMSA_id:098845 AY147389 Flavobacteriales Wd31 prokMSA_id:097494 AY147390 Flavobacteriales Wd32 prokMSA_id:081578 AY187458 clone SB83 prokMSA_id:082257 AY187502 clone SD5 prokMSA_id:081235 AY193946 clone SB123 prokMSA_id:082412 AY193953 clone SB160 prokMSA_id:085288 AY214678 Bacteroidetes clone SL2-2-C10R prokMSA_id:085663 AY214711 Bacteroidetes clone SL2-2-F3F prokMSA_id:082865 AY271863 clone BSW 43 prokMSA_id:089566 AY313922 Flavobacterium sp. clone P80-35 prokMSA_id:094278 AY364039 clone cRI11c prokMSA_id:095945 AY378199 Extreme arid zone HX-IE35 prokMSA_id:095551 AY378227 Glacial ice ML-E9 prokMSA_id:002287 D12656 Flavobacterium hydatis IAM 12365. prokMSA_id:002290 D12659 Flavobacterium columnare NCIMB 2248 . prokMSA_id:002333 D12662 Flavobacterium flevense IFO 14960 . prokMSA_id:002318 D12664 Flavobacterium johnsoniae IFO 14942. prokMSA_id:002293 D12669 Flavobacterium pectinovorum str. Dorey 81 NCIMB 9059 . prokMSA_id:002336 D12670 Flavobacterium psychrophilum NCIMB 1947 . prokMSA_id:002291 D12671 Flavobacterium saccharophilum str. VL31 NCIMB 2072 . prokMSA_id:002292 D12673 Flavobacterium succinicans IFO 14905 . prokMSA_id:002340 D12675 Cytophaga sp. str. L-43-1-N. prokMSA_id:002329 D14017 Flavobacterium branchiophilum str. 270 IFO 15030. prokMSA_id:002331 D26223 soil from paddy field clone PAD36. prokMSA_id:002328 D26225 soil from paddy field clone PAD38. prokMSA_id:002288 D26251 soil from paddy field clone PAD64. prokMSA_id:002303 D84581 Flexibacter sp. str. S22202. prokMSA_id:002304 D84584 Flexibacter sp. str. S22211. prokMSA_id:002305 D84586 Flexibacter sp. str. S22217. prokMSA_id:002306 D84633 Flexibacter sp. str. S24512. prokMSA_id:002307 D84637 Flexibacter sp. str. S24524. prokMSA_id:002308 D84643 Flexibacter sp. str. S24554. prokMSA_id:002339 M58764 Flavobacterium hydatis prokMSA_id:002335 M58767 Flavobacterium flevense prokMSA_id:002294 M58781 Flavobacterium columnare prokMSA_id:002334 M59051 Flavobacterium johnsoniae prokMSA_id:002289 M59053 Flavobacterium johnsoniae prokMSA_id:002330 M62792 Flexibacter aurantiacus str. Lewin DWO ATCC 23107 . prokMSA_id:002309 M62797 Flavobacterium aquatile ATCC 11947 . prokMSA_id:002337 M93151 Sporocytophaga cauliformis prokMSA_id:002338 NONE Flavobacterium succinicans DSM 4002 . prokMSA_id:002302 NONE Flavobacterium saccharophilum str. VL31 NCIMB 2072 . prokMSA_id:036674 U63936 Flavobacterium sp. prokMSA_id:039497 U63938 Flavobacterium sp. prokMSA_id:039224 U63940 Cytophaga sp. prokMSA_id:021164 U63943 Cytophaga sp. prokMSA_id:037952 U63946 Flavobacterium sp. prokMSA_id:043587 U63954 Flavobacterium sp. prokMSA_id:041347 U65970 spanning the V3-V4 region prokMSA_id:029190 U76098 Cytophaga sp. arc18 prokMSA_id:046236 U78934 Marine R2A103 prokMSA_id:002321 U85889 Flavobacterium sp. str. IC001. prokMSA_id:002322 U85890 Flavobacterium sp. ACAM 123. prokMSA_id:002332 X84632 str. SBR2106. prokMSA_id:021926 Z77629 2-400 C2.23 2.15.1.3.11 FLX.MARITIMUS_SUBGROUP 231 seqs 2.15.1.3.11.002 OTU 1 seq prokMSA_id:002359 AB015261 Cytophaga sp. str. JTB143. 2.15.1.3.11.004 OTU 1 seq prokMSA_id:002356 U85884 Polaribacter IC066 str. IC066. 2.15.1.3.11.005 OTU 1 seq prokMSA_id:002355 U85885 Polaribacter IC063 str. IC063. 2.15.1.3.11.006 OTU 1 seq prokMSA_id:002354 AF142831 Polaribacter BURTON-11. 2.15.1.3.11.007 OTU 1 seq prokMSA_id:002353 AF142856 clone BURTON-38. 2.15.1.3.11.010 OTU 6 seqs prokMSA_id:020667 AY006466 Flexibacter echinicida strain F2 prokMSA_id:040106 AY006467 Flexibacter echinicida strain F4 prokMSA_id:045622 AY006468 Flexibacter echinicida strain F8 prokMSA_id:036219 AY006469 Flexibacter echinicida strain F9 prokMSA_id:016735 AY006470 Flexibacter echinicida strain F11 prokMSA_id:024882 AY006471 Flexibacter echinicida strain F12 2.15.1.3.11.011 OTU 1 seq prokMSA_id:018143 AB057592 Flavobacteriaceae str. SA-0082 2.15.1.3.11.012 OTU 1 seq prokMSA_id:019411 AF277524 Polaribacter SIC.10332 2.15.1.3.11.013 OTU 1 seq prokMSA_id:019974 AF424347 CFB group MERTZ_0CM_53 2.15.1.3.11.014 OTU 9 seqs prokMSA_id:037069 AB032506 Tenacibaculum ovolyticus strain:IAM14318 prokMSA_id:020824 AB032507 Tenacibaculum ovolyticus strain:IFO15992 prokMSA_id:024142 AB032508 Tenacibaculum ovolyticus strain:IFO15993 prokMSA_id:058631 AB078058 Tenacibaculum ovolyticum strain:IFO 15947 prokMSA_id:067328 AF493677 Tenacibaculum sp. SW258 prokMSA_id:070449 AF493678 Tenacibaculum sp. SW274 prokMSA_id:087187 AY285942 Flavobacteriaceae G1A2 prokMSA_id:092710 AY353816 Flavobacteriaceae G11A2 prokMSA_id:093100 AY353817 Flavobacteriaceae G11A3 2.15.1.3.11.015 OTU 9 seqs prokMSA_id:031105 AB032501 Tenacibaculum mesophilum strain:MBIC1140 prokMSA_id:044581 AB032502 Tenacibaculum mesophilum strain:MBIC1543 prokMSA_id:052498 AB032503 Tenacibaculum mesophilum strain:MBIC4356 prokMSA_id:022718 AB032504 Tenacibaculum mesophilum strain:MBIC4357 prokMSA_id:021361 AF195446 Flexibacter sp. kba19 prokMSA_id:022873 AF469612 Tenacibaculum cellulophagum strain D30 prokMSA_id:059173 AY136123 Tenacibaculum sp. RED13 prokMSA_id:083944 AY241398 Tenacibaculum sp. UST010723-003 prokMSA_id:086241 AY241447 Tenacibaculum sp. UST020129-001 2.15.1.3.11.016 OTU 1 seq prokMSA_id:021710 AF125325 Cytophaga sp. F12 small subunit 2.15.1.3.11.017 OTU 1 seq prokMSA_id:059171 AY136126 Sphingobacteriales RED34 2.15.1.3.11.018 OTU 1 seq prokMSA_id:059156 AY136112 Flexibacter sp. MED75 2.15.1.3.11.019 OTU 1 seq prokMSA_id:025083 AF259632 CFB group CtaxPhil-13 2.15.1.3.11.020 OTU 1 seq prokMSA_id:025172 AF424343 CFB group MERTZ_2CM_289 2.15.1.3.11.021 OTU 4 seqs prokMSA_id:025568 AF424350 CFB group MERTZ_0CM_112 prokMSA_id:031362 AF425756 Tenacibaculum sp. clone MERTZ_0CM_42 prokMSA_id:092931 AY353818 Flavobacteriaceae G121102s1_3 prokMSA_id:092204 AY353820 Flavobacteriaceae G121102s2_3 2.15.1.3.11.022 OTU 3 seqs prokMSA_id:036779 AF343928 Cytophaga sp. NBF7 prokMSA_id:042720 AF343933 Cytophaga sp. NBF12 prokMSA_id:069032 AF343935 Marine NBF14 2.15.1.3.11.023 OTU 1 seq prokMSA_id:027679 AF355052 Polaribacter sp. Arctic97A-5 2.15.1.3.11.027 OTU 1 seq prokMSA_id:030581 AF424336 CFB group MERTZ_2CM_80 2.15.1.3.11.028 OTU 1 seq prokMSA_id:073960 AF530150 Tenacibaculum sp. MGP-74/AN6 2.15.1.3.11.029 OTU 1 seq prokMSA_id:058642 AB078044 Flexibacter aurantiacus subsp. copepodarum strain:IFO 15978 2.15.1.3.11.030 OTU 4 seqs prokMSA_id:032522 AB058905 Flexibacter sp. IUB42 prokMSA_id:035881 AB058906 Flexibacter sp. UBb prokMSA_id:044254 AB058912 Flexibacter sp. OI44 prokMSA_id:049823 AB058913 Flexibacter sp. OUB39 2.15.1.3.11.031 OTU 1 seq prokMSA_id:058630 AB078057 Tenacibaculum maritimum strain:IFO 15946 2.15.1.3.11.032 OTU 1 seq prokMSA_id:034364 AF469385 clone CTD5B 2.15.1.3.11.033 OTU 1 seq prokMSA_id:039685 AB039966 Marine gliding UWA-1 2.15.1.3.11.034 OTU 1 seq prokMSA_id:042044 AF424334 CFB group MERTZ_2CM_22 2.15.1.3.11.035 OTU 1 seq prokMSA_id:042267 AF424346 CFB group MERTZ_0CM_16 2.15.1.3.11.036 OTU 1 seq prokMSA_id:043791 AF465362 Flexibacter sp. UST991130-045 2.15.1.3.11.039 OTU 1 seq prokMSA_id:045481 AB032505 Tenacibaculum amylolyticum strain:MBIC4355 2.15.1.3.11.040 OTU 1 seq prokMSA_id:048158 AF424339 CFB group MERTZ_2CM_184 2.15.1.3.11.041 OTU 1 seq prokMSA_id:048241 AF367855 KHN36A 2.15.1.3.11.042 OTU 1 seq prokMSA_id:053529 AF465364 Tenacibaculum sp. UST991130-047 2.15.1.3.11.043 OTU 2 seqs prokMSA_id:059811 AY133380 clone OB3_178 prokMSA_id:077786 AY171369 clone s32 2.15.1.3.11.044 OTU 1 seq prokMSA_id:061125 AF530136 Tenacibaculum sp. MGP-10 2.15.1.3.11.047 OTU 1 seq prokMSA_id:061850 AF449259 CFB group clone R103-B20 2.15.1.3.11.048 OTU 2 seqs prokMSA_id:066034 AB073586 Cytophaga sp. T-551 prokMSA_id:066033 AB073587 Cytophaga sp. MBIC04665 2.15.1.3.11.049 OTU 1 seq prokMSA_id:067326 AF493676 Polaribacter sp. SW146 2.15.1.3.11.052 OTU 2 seqs prokMSA_id:070094 AF493675 Polaribacter sp. SW019 prokMSA_id:087423 AY285943 Flavobacteriaceae G1B2 2.15.1.3.11.053 OTU 1 seq prokMSA_id:070110 AF359539 Marine ATAM173a_2 2.15.1.3.11.054 OTU 1 seq prokMSA_id:073848 Y17133 Antarcticum aff. vesiculatum 2.15.1.3.11.055 OTU 2 seqs prokMSA_id:077603 AY172241 clone 25 prokMSA_id:078134 AY172256 clone 239 2.15.1.3.11.056 OTU 1 seq prokMSA_id:077652 AY171319 clone s108 2.15.1.3.11.057 OTU 1 seq prokMSA_id:077676 AJ535225 Cytophagales clone Hyd24-41 2.15.1.3.11.058 OTU 1 seq prokMSA_id:078228 AJ535222 Cytophagales clone Hyd24-2-2 2.15.1.3.11.059 OTU 1 seq prokMSA_id:084084 AY177723 Flavobacteriaceae T15 2.15.1.3.11.061 OTU 50 seqs prokMSA_id:040797 AF142952 TAYNAYA-6 prokMSA_id:045474 AF277468 Polaribacter SIC.127 prokMSA_id:051038 AF277490 Polaribacter SIC.42406 prokMSA_id:043261 AF277516 SIC.917 prokMSA_id:051108 AF277564 Polaribacter SIC.B9029 prokMSA_id:047567 AF333086 clone SIC.9-10 prokMSA_id:043476 AF354620 Polaribacter Arctic97A-15 prokMSA_id:028929 AF354621 Polaribacter Arctic96B-11 prokMSA_id:036375 AF425753 Polaribacter sp. clone MERTZ_0CM_405 prokMSA_id:080091 AF468409 Arctic sea ice ARK10048 prokMSA_id:080621 AF468413 Arctic sea ice ARK10105 prokMSA_id:079935 AF468414 Arctic sea ice associated ARK10121 prokMSA_id:080368 AF468415 Arctic sea ice associated ARK10124 prokMSA_id:079783 AF468426 Arctic sea ice ARK10177 prokMSA_id:067335 AF493674 Polaribacter sp. SW007 prokMSA_id:061127 AF530135 Polaribacter sp. MGP-9 prokMSA_id:084331 AF539759 Cellulophaga sp. E26 prokMSA_id:044604 AJ400343 marine ZD0255 prokMSA_id:082211 AY165564 Antarctic sea ice clone ANTXI/4_14-55 prokMSA_id:082051 AY165565 Antarctic sea ice clone ANTXI/4_14-24 prokMSA_id:081910 AY165580 Antarctic sea ice clone ANTXI/4_14-37 prokMSA_id:081705 AY165582 Antarctic sea ice clone ANTXI/4_14-12 prokMSA_id:081099 AY167314 Polaribacter irgensii strain ANT9044 prokMSA_id:081957 AY167317 Polaribacter irgensii strain ANT9210 prokMSA_id:081979 AY167319 Polaribacter franzmannii strain ANT9260 prokMSA_id:081397 AY167324 Polaribacter sp. ANT9167 prokMSA_id:081422 AY167325 Polaribacter irgensii strain ANT9243 prokMSA_id:079136 AY189722 Bacteroidetes KMM 3938 prokMSA_id:080402 AY198117 Polaribacter sp. HLE prokMSA_id:085098 AY274847 Bacteroidetes clone CF10 prokMSA_id:082951 AY274865 Bacteroidetes clone CF18 prokMSA_id:087087 AY285941 Flavobacteriaceae G1712M2 prokMSA_id:087935 AY285944 Flavobacteriaceae G812S3 prokMSA_id:087529 AY285945 Flavobacteriaceae G912S3B prokMSA_id:087711 AY285946 Flavobacteriaceae G912S4 prokMSA_id:086705 AY285949 Flavobacteriaceae G1112S3 prokMSA_id:089544 AY321390 clone K21 prokMSA_id:089872 AY321405 clone M11 prokMSA_id:092883 AY353812 Flavobacteriaceae G021102br01 prokMSA_id:092912 AY353813 Flavobacteriaceae G021102br02 prokMSA_id:092286 AY353814 Flavobacteriaceae G1112S4A prokMSA_id:092966 AY353815 Flavobacteriaceae G1112S4B prokMSA_id:092616 AY353822 Flavobacteriaceae G912S3A prokMSA_id:092953 AY354790 Bacteroidetes clone PLY-P2-57 prokMSA_id:092812 AY354793 Bacteroidetes clone PLY-P2-67 prokMSA_id:092297 AY354796 Bacteroidetes clone PLY-P2-79 prokMSA_id:092963 AY354802 Bacteroidetes clone PLY-P2-101 prokMSA_id:002362 L10947 marine snow associated clone agg50. prokMSA_id:002352 U14586 Polaribacter franzmannii str. 301. prokMSA_id:002357 U73726 Polaribacter filamentus str. 215. 2.15.1.3.11.062 OTU 1 seq prokMSA_id:088406 AY321391 clone K6 2.15.1.3.11.063 OTU 1 seq prokMSA_id:092300 AY354784 Bacteroidetes clone PLY-P2-34 2.15.1.3.11.064 OTU 1 seq prokMSA_id:092665 AY354166 clone pIR3BD04 2.15.1.3.11.065 OTU 1 seq prokMSA_id:092882 AY353819 Flavobacteriaceae G121102s2_2 2.15.1.3.11.066 OTU 1 seq prokMSA_id:093010 AY354786 Bacteroidetes clone PLY-P2-38 2.15.1.3.11.999 poor quality 97 seqs prokMSA_id:050107 AB008044 Flexibacter sp. A37 prokMSA_id:018605 AB047138 SW2 prokMSA_id:038496 AB077352 CFB group clone:TYM--15 prokMSA_id:053511 AF000279 marine prokMSA_id:053562 AF000286 marine prokMSA_id:035464 AF000293 marine prokMSA_id:026213 AF000646 marine pD-18 prokMSA_id:026911 AF001508 marine pG-8 prokMSA_id:031784 AF001517 marine pG-34 prokMSA_id:040582 AF017801 Flexibacter maritimus-like S3C18 prokMSA_id:047599 AF017802 Flexibacter maritimus-like S3C19 prokMSA_id:046067 AF017803 Flexibacter maritimus-like S3C20 prokMSA_id:043959 AF025561 Polaribacter sp. MED18 prokMSA_id:026001 AF025564 Cytophagales str. MED21 prokMSA_id:071013 AF034938 Flexibacter sp. D11 prokMSA_id:074631 AF125326 Cytophaga sp. F3 small subunit prokMSA_id:025629 AF141524 Cytophagales clone CRE-PA44 prokMSA_id:021808 AF182015 Flexibacter sp. MED28 prokMSA_id:025729 AF207850 marine OTU_A prokMSA_id:019378 AF207851 marine OTU_B prokMSA_id:035336 AF277551 McMurdo.20 prokMSA_id:017397 AF283840 Arctic sea ice AWS-7B3 prokMSA_id:033417 AF283841 Arctic sea ice AWS-7B4 prokMSA_id:021316 AF283843 Arctic sea ice AWS-6B2 prokMSA_id:021537 AF283844 Arctic sea ice AWS-7B8 prokMSA_id:049530 AF283845 Arctic sea ice AWS-7B1 prokMSA_id:018753 AF283864 Arctic sea ice AWS-4M1 prokMSA_id:066711 AF325148 D30 prokMSA_id:029742 AF365999 Marine CFB-group N43 prokMSA_id:027808 AF417894 antarctic soil clone bh2.65 prokMSA_id:028291 AF417903 antarctic soil clone bh3.63 prokMSA_id:068927 AF419193 antarctic soil clone bh4.63 prokMSA_id:025034 AF419217 antarctic soil clone bh6.61 prokMSA_id:067751 AF423373 CFB group isolate DGGE band W1 prokMSA_id:064796 AF434141 CFB/Green sulfur group clone M1-1-11 prokMSA_id:064795 AF434142 CFB/Green sulfur group clone M3-1-21 prokMSA_id:064794 AF434143 CFB/Green sulfur group clone M3-1-2 prokMSA_id:064793 AF434144 CFB/Green sulfur group clone M3-1-30 prokMSA_id:064792 AF434145 CFB/Green sulfur group clone M3-1-8 prokMSA_id:064791 AF434146 CFB/Green sulfur group clone P2-1-10 prokMSA_id:064789 AF434147 CFB/Green sulfur group clone P2-1-1 prokMSA_id:055766 AF434148 CFB/Green sulfur group clone P2-1-3 prokMSA_id:064790 AF434149 CFB/Green sulfur group clone P3-1-12 prokMSA_id:064788 AF434150 CFB/Green sulfur group clone P3-1-14 prokMSA_id:064787 AF434151 CFB/Green sulfur group clone P3-1-29 prokMSA_id:064786 AF434152 CFB/Green sulfur group clone M3-1-25 prokMSA_id:064785 AF434153 CFB/Green sulfur group clone P2-1-9 prokMSA_id:021250 AF460870 Marine SIMO-IS106 prokMSA_id:047475 AF460873 Marine SIMO-IS109 prokMSA_id:034079 AF460874 Marine SIMO-IS110 prokMSA_id:024642 AF460876 Marine SIMO-IS112 prokMSA_id:052700 AF460899 Marine SIMO-IS190 prokMSA_id:048389 AF460902 Marine SIMO-IS129 prokMSA_id:029291 AF460905 Marine SIMO-IS130 prokMSA_id:025252 AF460907 Marine SIMO-IS132 prokMSA_id:044897 AF465390 Tenacibaculum sp. UST991130-035 prokMSA_id:037199 AF465391 Tenacibaculum sp. UST991130-036 prokMSA_id:036738 AF469613 Tenacibaculum cellulophagum strain D28 prokMSA_id:064150 AF477867 clone 1-PML 22% pond prokMSA_id:061160 AF530095 isolate MGP DGGE Band 4 prokMSA_id:061117 AF530140 Tenacibaculum sp. MGP-21/AN7 prokMSA_id:072447 AJ242825 Marine 'DDGE band 2' mRNA clone band 2 prokMSA_id:020371 AJ298376 marine BY-65 prokMSA_id:059232 AJ319852 SB-15-Cd prokMSA_id:059219 AJ458193 Cytophaga sp. 0sq516 prokMSA_id:089111 AJ568011 Cytophaga sp. isolate DGGE-49 prokMSA_id:077681 AY171338 clone s90 prokMSA_id:087000 AY274249 Bacteroidetes isolate DGGE band GWS-SE-7 prokMSA_id:084632 AY274857 Bacteroidetes clone CF57 prokMSA_id:090595 AY317118 Sphingobacteria SKA51 prokMSA_id:094635 AY321528 Marine 13685 prokMSA_id:094608 AY321529 Marine 13683 prokMSA_id:092343 AY353553 Bacteroidetes isolate DGGE gel band AB-1 prokMSA_id:093134 AY353821 Flavobacteriaceae G1612M2 prokMSA_id:093093 AY357899 Saltmarsh sediment NRL-CB19 prokMSA_id:092785 AY357903 Saltmarsh sediment NRL-TS20 prokMSA_id:092798 AY357909 Saltmarsh sediment NRL-SS36 prokMSA_id:002341 D12667 Flexibacter maritimus JCM 8137. prokMSA_id:002360 D14023 Flexibacter maritimus str. 449 . prokMSA_id:002361 M58775 Polaribacter glomeratus prokMSA_id:002342 M61002 Polaribacter irgensii str. 23-P ATCC 49675. prokMSA_id:002358 M64629 Flexibacter maritimus str. R2 ATCC 43398 . prokMSA_id:048099 U64021 Polaribacter sp. SCB44 prokMSA_id:051940 U64023 Flexibacter sp. prokMSA_id:055729 U78933 Marine R2A10 prokMSA_id:073029 U85883 Marine psychrophile IC054 prokMSA_id:002346 Z77364 unnamed organism. prokMSA_id:002347 Z77379 unnamed organism. prokMSA_id:002348 Z77387 unnamed organism. prokMSA_id:002343 Z77401 unnamed organism. prokMSA_id:002344 Z77402 unnamed organism. prokMSA_id:002349 Z77476 unnamed organism. prokMSA_id:002350 Z77490 unnamed organism. prokMSA_id:002345 Z77497 unnamed organism. prokMSA_id:002351 Z77525 unnamed organism. prokMSA_id:049686 Z77569 1-140 C39 prokMSA_id:050306 Z77613 2-100 C2 2.15.1.3.12 CAP.OCHRACEA_SUBGROUP 67 seqs 2.15.1.3.12.001 OTU 2 seqs prokMSA_id:002383 L14637 Capnocytophaga canimorsus str. CalHlthDept 2340-2-61 ATCC 35979 prokMSA_id:002392 X97246 Capnocytophaga canimorsus str. CalHlthDept 2340-2-61 ATCC 35979 2.15.1.3.12.002 OTU 2 seqs prokMSA_id:002389 U41349 Capnocytophaga haemolytica LMG 16021 . prokMSA_id:002390 X97247 Capnocytophaga haemolytica ATCC 51501 . 2.15.1.3.12.004 OTU 1 seq prokMSA_id:002382 X67608 Capnocytophaga gingivalis ATCC 33624 . 2.15.1.3.12.005 OTU 2 seqs prokMSA_id:002381 L14635 Capnocytophaga ochracea str. 25 ATCC 33596 . prokMSA_id:002370 X67610 Capnocytophaga ochracea str. 25 ATCC 33596 . 2.15.1.3.12.006 OTU 5 seqs prokMSA_id:039934 AF201976 Human oral AC62 prokMSA_id:070530 AY005074 Capnocytophaga sp. oral clone AH015 prokMSA_id:002366 U41347 Capnocytophaga granulosa LMG 16022 . prokMSA_id:002377 U41348 Capnocytophaga granulosa LMG 12119. prokMSA_id:002368 X97248 Capnocytophaga granulosa ATCC 51502 . 2.15.1.3.12.007 OTU 2 seqs prokMSA_id:002374 AF133536 Capnocytophaga sputigena str. 897 CIP 100. prokMSA_id:002373 X67609 Capnocytophaga sputigena ATCC 33612 . 2.15.1.3.12.008 OTU 2 seqs prokMSA_id:031284 AF118419 Coenonia anatina prokMSA_id:002371 Y17612 Coenonia anatina LMG 14382 . 2.15.1.3.12.011 OTU 2 seqs prokMSA_id:095610 AF426105 Capnocytophaga sp. prokMSA_id:002365 X97245 Capnocytophaga cynodegmi ATCC 49044 . 2.15.1.3.12.013 OTU 1 seq prokMSA_id:059534 AF538853 Capnocytophaga sp. oral strain P4G_35 P4 2.15.1.3.12.014 OTU 3 seqs prokMSA_id:023229 AF385569 Capnocytophaga sp. oral clone BU084 prokMSA_id:021242 AY005075 Capnocytophaga sp. oral clone BM058 prokMSA_id:073111 AY134894 Capnocytophaga sp. oral clone BR085 2.15.1.3.12.015 OTU 1 seq prokMSA_id:071957 AF385494 Capnocytophaga sp. oral clone DZ074 2.15.1.3.12.016 OTU 3 seqs prokMSA_id:056208 AF543293 Capnocytophaga sp. ChDC OS43 prokMSA_id:058285 AF543294 Capnocytophaga sp. ChDC OS44 prokMSA_id:070616 AY005076 Capnocytophaga sp. oral clone BB167 2.15.1.3.12.018 OTU 7 seqs prokMSA_id:038523 AF201975 Human oral C61 prokMSA_id:058284 AF543292 Capnocytophaga ochracea strain ChDC OS42 prokMSA_id:056144 AF543298 Capnocytophaga ochracea strain ChDC OS48 prokMSA_id:026200 AY005078 Capnocytophaga sp. oral clone X066 prokMSA_id:039124 AY005079 Capnocytophaga sp. oral clone AA032 prokMSA_id:029194 AY005080 Capnocytophaga sp. oral clone X089 prokMSA_id:002363 U41350 Capnocytophaga ochracea ATCC 27872 . 2.15.1.3.12.020 OTU 4 seqs prokMSA_id:058282 AF543295 Capnocytophaga gingivalis prokMSA_id:037716 AY005073 Capnocytophaga sp. oral strain S3 prokMSA_id:002386 L14639 Capnocytophaga gingivalis ATCC 33624 . prokMSA_id:002367 U42010 Capnocytophaga sp. str. S3. 2.15.1.3.12.021 OTU 2 seqs prokMSA_id:041919 AF469381 clone 33-PA1B00 prokMSA_id:087997 AY279052 clone CS010 2.15.1.3.12.022 OTU 1 seq prokMSA_id:066035 AB073573 Cytophaga sp. I-545 2.15.1.3.12.023 OTU 1 seq prokMSA_id:070542 AF366270 Capnocytophaga sp. clone DS022 2.15.1.3.12.024 OTU 1 seq prokMSA_id:073803 AY008312 Capnocytophaga sp. oral clone EL043 2.15.1.3.12.025 OTU 1 seq prokMSA_id:087442 AY278613 Capnocytophaga genomosp. C1 2.15.1.3.12.026 OTU 1 seq prokMSA_id:092636 AY349368 Capnocytophaga sp. oral clone ID062 2.15.1.3.12.999 poor quality 23 seqs prokMSA_id:017720 AB022301 Obligately oligotrophic POCPN-74 prokMSA_id:030918 AB022305 Obligately oligotrophic POC-8 prokMSA_id:042362 AF141407 Cytophagales clone CR-FL26 prokMSA_id:068139 AF365596 clone BT60MF2BG9 prokMSA_id:055520 AJ416258 clone Sta5-10 prokMSA_id:018298 AY005077 Capnocytophaga sp. oral strain A47ROY prokMSA_id:060894 AY135874 clone SG1-74 prokMSA_id:002376 L14636 Capnocytophaga sputigena ATCC 33612 . prokMSA_id:002384 L14638 Capnocytophaga cynodegmi ATCC 49044 . prokMSA_id:002379 NONE Capnocytophaga sputigena ATCC 33612 . prokMSA_id:002391 U41346 Capnocytophaga gingivalis LMG 12118. prokMSA_id:002394 U41351 Capnocytophaga ochracea LMG 12117. prokMSA_id:002375 U41352 Capnocytophaga sp. LMG 12116. prokMSA_id:002369 U41353 Capnocytophaga ochracea LMG 12115. prokMSA_id:002364 U41354 Capnocytophaga ochracea FDC 7b. prokMSA_id:002393 U42008 Capnocytophaga sp. str. S1. prokMSA_id:002380 U42009 Capnocytophaga sp. str. S1B. prokMSA_id:002385 X89310 clone 311. prokMSA_id:002388 X89320 clone 4711. prokMSA_id:002378 Z77388 unnamed organism. prokMSA_id:002372 Z77395 unnamed organism. prokMSA_id:002387 Z77542 unnamed organism. prokMSA_id:071199 Z77608 2-100 C1.9 2.15.1.3.13 CY.ULIGINOSA_SUBGROUP 185 seqs 2.15.1.3.13.001 OTU 1 seq prokMSA_id:002406 AF170735 str. QSSC1-18. 2.15.1.3.13.002 OTU 8 seqs prokMSA_id:002407 AF170754 str. QSSC9-14. prokMSA_id:016858 AF205368 Gelidibacter sp. QSSC9-16 prokMSA_id:045756 AJ296578 GR-Sh1-5 clone GR-Sh1-5 prokMSA_id:023255 AY027802 Aequorivita ferruginea SW49T prokMSA_id:052249 AY027803 Aequorivita ferruginea G#5 prokMSA_id:040585 AY027804 Aequorivita ferruginea O9-2 prokMSA_id:033316 AY027805 Aequorivita lipolytica Y10-2T prokMSA_id:039184 AY027806 Aequorivita crocea Y12-2T 2.15.1.3.13.003 OTU 1 seq prokMSA_id:002405 AF142840 clone BURTON-20. 2.15.1.3.13.004 OTU 1 seq prokMSA_id:002404 AF001366 str. IC166. 2.15.1.3.13.005 OTU 1 seq prokMSA_id:002403 U85886 ACAM 210. 2.15.1.3.13.006 OTU 7 seqs prokMSA_id:029722 AB032509 Cellulophaga lytica strain:MBIC1544 prokMSA_id:023812 AB032510 Cellulophaga lytica strain:IFO15986 prokMSA_id:025886 AB032511 Cellulophaga lytica strain:IFO16020 prokMSA_id:028162 AB032512 Cellulophaga lytica strain:IFO16021 prokMSA_id:034517 AB032513 Cellulophaga lytica strain:IFO16022 prokMSA_id:002401 AJ005973 Cytophaga fucicola str. NN015860 strain. prokMSA_id:031829 AY035870 Cellulophaga lytica strain ACEM21 2.15.1.3.13.007 OTU 7 seqs prokMSA_id:045411 AF235118 Cytophaga sp. KT02ds20 prokMSA_id:070798 AF493680 Cellulophaga sp. SW265 prokMSA_id:071231 AF493681 Cellulophaga sp. SW285 prokMSA_id:067189 AF497997 Cellulophaga sp. MM#3 small subunit prokMSA_id:083359 AF539753 Cytophaga sp. E4 prokMSA_id:083115 AF539754 Cytophaga sp. E46 prokMSA_id:002400 AJ005972 Cytophaga baltica str. NN015840 strain. 2.15.1.3.13.008 OTU 1 seq prokMSA_id:002399 AF142846 clone BURTON-28. 2.15.1.3.13.009 OTU 1 seq prokMSA_id:017841 AF367854 BA 2.15.1.3.13.010 OTU 1 seq prokMSA_id:018652 AF417873 antarctic soil clone bh1.33 2.15.1.3.13.011 OTU 1 seq prokMSA_id:020776 AJ318193 Bacteroidetes clone BIvi22 2.15.1.3.13.012 OTU 1 seq prokMSA_id:022232 AF170761 Flavobacteriaceae QSSC8L-1 2.15.1.3.13.013 OTU 1 seq prokMSA_id:022632 AF146231 CLEAR-5 2.15.1.3.13.014 OTU 16 seqs prokMSA_id:058646 AB078039 Flexibacter aggregans strain:IFO 15975 prokMSA_id:081311 AB080771 Arenibacter troitsensis prokMSA_id:078926 AB094462 Flexibacter sp. 2216.15.5 prokMSA_id:070583 AF235114 Cytophaga sp. KT02ds22 prokMSA_id:080973 AF468422 Arctic sea ice associated ARK10146 prokMSA_id:083977 AY241555 Marine HP2 prokMSA_id:086581 AY241556 Marine HP2a prokMSA_id:083393 AY241558 Marine HP14 prokMSA_id:082469 AY241559 Marine HP19 prokMSA_id:085140 AY241562 Marine HP27 prokMSA_id:084477 AY241564 Marine HP29 prokMSA_id:086538 AY241567 Marine HP34 prokMSA_id:085479 AY241568 Marine HP35 prokMSA_id:086588 AY241569 Marine HP42a prokMSA_id:083237 AY241570 Marine HP44 prokMSA_id:096209 AY394872 Cytophaga sp. EPR 14 2.15.1.3.13.015 OTU 2 seqs prokMSA_id:054566 AF277555 Cellulophaga SIC.B8008 prokMSA_id:025347 AF333084 Cellulophaga sp. clone SIC.8-18 2.15.1.3.13.016 OTU 1 seq prokMSA_id:027077 AF170786 Flavobacteriaceae QSSC9L-8 2.15.1.3.13.017 OTU 1 seq prokMSA_id:028646 AF424354 CFB group MERTZ_0CM_248 2.15.1.3.13.019 OTU 1 seq prokMSA_id:031121 AF417888 antarctic soil clone bh2.48 2.15.1.3.13.022 OTU 4 seqs prokMSA_id:032503 AF424355 CFB group MERTZ_0CM_255 prokMSA_id:059808 AY133383 clone BB2_234 prokMSA_id:059807 AY133384 clone OB3_112 prokMSA_id:059805 AY133385 clone OB3_86 2.15.1.3.13.023 OTU 2 seqs prokMSA_id:033373 AF328164 clone KS10 prokMSA_id:083353 AJ557873 Marine arctic deep-sea FI7 2.15.1.3.13.024 OTU 1 seq prokMSA_id:034151 AF143825 clone 4-Org1-38 2.15.1.3.13.025 OTU 1 seq prokMSA_id:035795 AB077353 CFB group clone:TYM--16 2.15.1.3.13.026 OTU 1 seq prokMSA_id:035971 AF367850 1.3.10 2.15.1.3.13.027 OTU 1 seq prokMSA_id:036799 AY035869 Cellulophaga sp. ACEM20 2.15.1.3.13.028 OTU 2 seqs prokMSA_id:039004 AF052742 Arenibacter latericius KMM 426T prokMSA_id:084611 AY271622 Arenibacter sp. KMM 3941 2.15.1.3.13.029 OTU 1 seq prokMSA_id:040211 AF446285 CFB group FL13A12 2.15.1.3.13.030 OTU 1 seq prokMSA_id:044039 AF190220 RSHD3B4 2.15.1.3.13.031 OTU 5 seqs prokMSA_id:046683 AF235126 Cytophaga sp. KT02ds18 prokMSA_id:046363 AF277561 Cellulophaga SIC.B8233 prokMSA_id:045309 AF359541 Marine ATAM173a_6 prokMSA_id:067321 AF493682 Flavobacteriaceae str. SW268 prokMSA_id:083542 AF539757 Cellulophaga sp. E6 2.15.1.3.13.032 OTU 1 seq prokMSA_id:045800 AF388893 Flavobacteriaceae clone GOBB3-CL103 2.15.1.3.13.033 OTU 1 seq prokMSA_id:050504 AF366000 Marine CFB-group S3 2.15.1.3.13.034 OTU 3 seqs prokMSA_id:066038 AB073569 Cytophaga sp. I-602 prokMSA_id:066036 AB073571 Cytophaga sp. I-105 prokMSA_id:055430 AB073572 Cytophaga sp. I-689 2.15.1.3.13.035 OTU 1 seq prokMSA_id:053605 AF277557 SIC.B8018 2.15.1.3.13.036 OTU 1 seq prokMSA_id:054172 AF142951 TAYNAYA-5 2.15.1.3.13.037 OTU 1 seq prokMSA_id:055261 AJ456969 Muricauda sp. RSc-1 isolate RSc-1 2.15.1.3.13.038 OTU 1 seq prokMSA_id:059806 AY133382 clone BB2_71 2.15.1.3.13.039 OTU 1 seq prokMSA_id:059810 AY133381 clone BB2_98 2.15.1.3.13.040 OTU 1 seq prokMSA_id:061123 AF530137 Zobellia sp. MGP-14 2.15.1.3.13.041 OTU 4 seqs prokMSA_id:072663 AJ244699 Flavobacterium sp. V12.MO.200.17 prokMSA_id:061973 AJ244700 Flavobacterium sp. V4.MS.33 prokMSA_id:061970 AJ244701 Flavobacterium sp. V4.MS.29 prokMSA_id:061969 AJ244702 Flavobacterium sp. V4.MS.25 2.15.1.3.13.042 OTU 1 seq prokMSA_id:065083 AY095734 CFB group NL-127 2.15.1.3.13.043 OTU 1 seq prokMSA_id:067323 AF493679 Flavobacteriaceae str. SW072 2.15.1.3.13.044 OTU 1 seq prokMSA_id:067392 AJ456973 Flavobacterium sp. WPl-1 isolate WPl-1 2.15.1.3.13.045 OTU 2 seqs prokMSA_id:067395 AJ456971 Muricauda sp. WIg-7 isolate WIg-7 prokMSA_id:067394 AJ456972 Muricauda sp. SCc-2 isolate SCc-2 2.15.1.3.13.046 OTU 1 seq prokMSA_id:067397 AJ456968 Muricauda sp. LSc-7 isolate LSc-7 2.15.1.3.13.047 OTU 1 seq prokMSA_id:068415 AF486815 Flavobacteriaceae isolate L979 2.15.1.3.13.048 OTU 1 seq prokMSA_id:069822 AB073564 Cytophaga sp. MBIC04693 2.15.1.3.13.049 OTU 1 seq prokMSA_id:070274 AF208293 Zobellia galactanovora 2.15.1.3.13.050 OTU 1 seq prokMSA_id:077851 AB098581 Cytophaga sp. TUT1013 2.15.1.3.13.051 OTU 1 seq prokMSA_id:078161 AY171359 clone s21 2.15.1.3.13.052 OTU 2 seqs prokMSA_id:078303 AY171354 clone s68 prokMSA_id:078246 AY171363 clone s16 2.15.1.3.13.054 OTU 16 seqs prokMSA_id:031393 AF277514 Cellulophaga SIC.834 prokMSA_id:053677 AF277558 Cellulophaga SIC.B8113 prokMSA_id:044202 AF333083 Cellulophaga sp. clone MCMURDO_ICE-7 prokMSA_id:029027 AF424362 CFB group MERTZ_0CM_403 prokMSA_id:046338 AF425751 Cellulophaga sp. clone MERTZ_0CM_116 prokMSA_id:080277 AF468227 clone ARKCH2Br2-17 prokMSA_id:079769 AF468244 clone ARKDMS-74 prokMSA_id:080367 AF468265 clone ARKCH4-88 prokMSA_id:080618 AF468408 Arctic sea ice ARK10044 prokMSA_id:080846 AF468420 Arctic sea ice associated ARK10141 prokMSA_id:080944 AF468428 Arctic sea ice ARK10223 prokMSA_id:075714 AF550587 Bacteroidetes Ko510 prokMSA_id:076628 AF550590 Bacteroidetes Ko706 prokMSA_id:059803 AY133387 clone BB2_231 prokMSA_id:081534 AY165581 Antarctic sea ice clone ANTXI/4_14-81 prokMSA_id:081144 AY167316 Bacteroidetes ANT9105 2.15.1.3.13.055 OTU 2 seqs prokMSA_id:082529 AF539756 Cellulophaga sp. E14 prokMSA_id:083581 AF539758 Cellulophaga sp. RE2-13 2.15.1.3.13.056 OTU 1 seq prokMSA_id:083454 AY177724 Flavobacteriaceae TN 2.15.1.3.13.057 OTU 1 seq prokMSA_id:083608 AY271626 Bacteroidetes KMM 3951 2.15.1.3.13.058 OTU 2 seqs prokMSA_id:086285 AY274838 Bacteroidetes clone 1D10 prokMSA_id:083848 AY274851 Bacteroidetes clone CF2 2.15.1.3.13.059 OTU 1 seq prokMSA_id:084346 AY241561 Marine HP25 2.15.1.3.13.060 OTU 1 seq prokMSA_id:085064 AY271625 Bacteroidetes KMM 3949 2.15.1.3.13.061 OTU 1 seq prokMSA_id:085665 AY271624 Bacteroidetes KMM 3947 2.15.1.3.13.062 OTU 1 seq prokMSA_id:086570 AY271623 Bacteroidetes KMM 3903 2.15.1.3.13.063 OTU 1 seq prokMSA_id:089246 AY317149 Cytophaga sp. GE04 2.15.1.3.13.064 OTU 1 seq prokMSA_id:093854 AY259510 Aequorivita sp. 'BSD S2 02' 2.15.1.3.13.065 OTU 2 seqs prokMSA_id:098563 AY424899 Robiginitalea biformata strain HTCC2501 prokMSA_id:096608 AY424900 Robiginitalea biformata strain HTCC2514 2.15.1.3.13.999 poor quality 55 seqs prokMSA_id:067707 AB078153 Cytophaga sp. MBIC01484 prokMSA_id:032606 AF025315 Colwellia sp. KAT2 prokMSA_id:038642 AF025317 Cytophagales str. KAT4 prokMSA_id:042007 AF025320 Cytophagales str. KAT7 prokMSA_id:037694 AF114683 cytophaga DCM-FREE-10 prokMSA_id:031482 AF141499 Cytophagales clone CRE-PA10 prokMSA_id:049676 AF141518 Cytophagales clone CRE-PA37 prokMSA_id:017693 AF141547 Cytophagales clone CRE-PA79 prokMSA_id:038996 AF141559 Cytophagales prokMSA_id:037451 AF181924 clone 23d/1 prokMSA_id:036864 AF207852 marine OTU_C prokMSA_id:041821 AF216511 Pleur2-d1 prokMSA_id:036338 AF216516 SkelCos2-14 prokMSA_id:074329 AF260742 Cytophaga sp. I-132-10 prokMSA_id:019655 AF260743 Cytophaga sp. I-132-11 prokMSA_id:045016 AF261058 Gelidibacter sp. SKA37 prokMSA_id:025511 AF277482 SIC.42355 prokMSA_id:020859 AF321066 UM2b prokMSA_id:048542 AF321071 clone A2 prokMSA_id:031277 AF367847 Km1 prokMSA_id:034200 AF367856 H-S3 prokMSA_id:060659 AF406486 CFB group clone AEGEAN_129_27F prokMSA_id:060658 AF406487 CFB group clone AEGEAN_136_27F prokMSA_id:054409 AF419204 antarctic soil clone bh5.58 prokMSA_id:031889 AF419285 antarctic soil clone bh8.7 prokMSA_id:022671 AF432275 Cytophaga sp. FO-0d-1 prokMSA_id:026027 AF432330 gamma 4%N-0d-8 prokMSA_id:021442 AF432333 eukaryote 4%N-0d-7 ; chloroplast chloroplast product prokMSA_id:039808 AF446280 CFB group FL13B02 prokMSA_id:068864 AF460881 Marine SIMO-IS117 prokMSA_id:032555 AF473996 CFB group LR-12 prokMSA_id:069516 AF544948 Bacteroidetes clone 3-7-1 prokMSA_id:072538 AF544962 Bacteroidetes clone 6-7-2 prokMSA_id:070704 AJ242826 Marine 'DDGE band 3' mRNA clone band 3 prokMSA_id:038086 AJ250899 marine DIL-4 prokMSA_id:073244 AJ298373 marine AY-37 prokMSA_id:071887 AJ298374 marine AY-33 prokMSA_id:073014 AJ298375 marine BY-64 prokMSA_id:020932 AJ298377 marine BY-66 prokMSA_id:056508 AJ416248 clone Sta4-39 prokMSA_id:066161 AJ487526 cytophaga sp. clone NCh11-LL2 prokMSA_id:059804 AY133386 clone BB2_199 prokMSA_id:078405 AY171347 clone s85 prokMSA_id:085497 AY241565 Marine HP31 prokMSA_id:083648 AY241571 Marine HP41 prokMSA_id:083579 AY263725 Bacteroidetes clone FBR11 prokMSA_id:002410 D12666 Cytophaga lytica str. LIM-21 ATCC 23178 . prokMSA_id:002396 D12668 Cytophaga marinoflava NCIMB 397 . prokMSA_id:002397 D12674 Cytophaga uliginosa NCIMB 1863 . prokMSA_id:002398 M62796 Cytophaga lytica str. LIM-21 ATCC 23178 . prokMSA_id:002402 M62799 Cytophaga uliginosa str. Zobell 553 ATCC 14397 . prokMSA_id:002395 U58340 str. E-38. prokMSA_id:002408 U58353 str. E-45. prokMSA_id:026864 U64018 SCB41 prokMSA_id:002409 X89314 clone 3711. 2.15.1.3.14 PSF.TORQUIS_SUBGROUP 151 seqs 2.15.1.3.14.001 OTU 4 seqs prokMSA_id:002427 AB017046 Cytophaga sp. str. J18-M01. prokMSA_id:002428 AB017047 Cytophaga sp. str. AA8-2. prokMSA_id:002429 AB017048 Cytophaga sp. str. AA8-3. prokMSA_id:079767 AY195836 Kordia algicida 2.15.1.3.14.002 OTU 1 seq prokMSA_id:002424 AF142908 clone ORGANIC-6. 2.15.1.3.14.003 OTU 7 seqs prokMSA_id:002421 AF001365 Psychroflexus torquis ACAM 627. prokMSA_id:002423 AF142909 clone ORGANIC-7. prokMSA_id:080980 AF468410 Arctic sea ice ARK10063 prokMSA_id:079692 AF468429 Arctic sea ice ARK10255 prokMSA_id:081123 AY167318 Psychroflexus torquis ANT9232b prokMSA_id:081527 AY167320 Psychroflexus torquis strain ANT9268 prokMSA_id:002419 U85881 Psychroflexus torquis str. 651 ACAM 623 . 2.15.1.3.14.005 OTU 5 seqs prokMSA_id:002414 AJ002569 str. DPT1.3. prokMSA_id:061980 AJ244691 Flavobacterium sp. V4.BO.21 prokMSA_id:061971 AJ244695 Flavobacterium sp. V4.MO.23 marine isolate prokMSA_id:070361 AJ244696 Flavobacterium sp. V4.ME.09 marine isolate prokMSA_id:061975 AJ244697 Flavobacterium sp. V4.MO.31 2.15.1.3.14.006 OTU 1 seq prokMSA_id:002413 AF001373 str. IC148. 2.15.1.3.14.007 OTU 1 seq prokMSA_id:002411 M92279 Flavobacterium salegens DSM 5424 . 2.15.1.3.14.008 OTU 1 seq prokMSA_id:016807 AF417871 antarctic soil clone bh1.19 2.15.1.3.14.009 OTU 1 seq prokMSA_id:016835 AY038574 clone CD2D6 2.15.1.3.14.010 OTU 1 seq prokMSA_id:070738 AF359551 Marine ALUS253_6 2.15.1.3.14.011 OTU 1 seq prokMSA_id:021344 Z88577 isolate HOS19 2.15.1.3.14.012 OTU 1 seq prokMSA_id:022547 AF211292 Cytophagales CE55 2.15.1.3.14.013 OTU 4 seqs prokMSA_id:070480 AF259613 CFB group CtaxMed-1 prokMSA_id:038713 AF259614 CFB group CtaxMed-5 prokMSA_id:022669 AF259615 CFB group CtaxMed-18 prokMSA_id:070750 AF259618 CFB group CtaxMed-15 2.15.1.3.14.014 OTU 2 seqs prokMSA_id:035551 AF300973 A16s prokMSA_id:023725 AJ391201 Flavobacterium sp. AS-40 2.15.1.3.14.015 OTU 1 seq prokMSA_id:024630 AB035556 marine strain:GY12 2.15.1.3.14.017 OTU 1 seq prokMSA_id:025633 AF417891 antarctic soil clone bh2.57 2.15.1.3.14.018 OTU 1 seq prokMSA_id:026072 AF125327 Cytophaga sp. B12 small subunit 2.15.1.3.14.019 OTU 1 seq prokMSA_id:027238 AF425752 CFB group clone MERTZ_0CM_39 2.15.1.3.14.020 OTU 2 seqs prokMSA_id:030312 AF417864 antarctic soil clone bh1.2 prokMSA_id:027348 AF447180 antarctic soil clone bh5.13 2.15.1.3.14.021 OTU 1 seq prokMSA_id:027823 AF125324 Cytophaga sp. G22 small subunit 2.15.1.3.14.022 OTU 1 seq prokMSA_id:029202 AF142953 TAYNAYA-7 2.15.1.3.14.023 OTU 1 seq prokMSA_id:031861 AF328221 clone KS88 2.15.1.3.14.024 OTU 3 seqs prokMSA_id:058618 AB078070 Flexibacter tractuosus strain:IFO 15980 prokMSA_id:044430 AF425755 CFB group clone MERTZ_0CM_94 prokMSA_id:061118 AF530141 Cf. Cytophaga sp. MGP-28/AN2 2.15.1.3.14.025 OTU 5 seqs prokMSA_id:034476 AF277536 ARCTIC.117 prokMSA_id:074154 AF493688 Flavobacteriaceae str. SW256 prokMSA_id:085471 AF539755 Bacteroidetes R43 prokMSA_id:088683 AY298788 Flavobacteriaceae G812M2 prokMSA_id:002420 U85882 str. IC076. 2.15.1.3.14.026 OTU 1 seq prokMSA_id:035918 AF417919 antarctic soil clone bh5.18 2.15.1.3.14.027 OTU 1 seq prokMSA_id:041855 AF367853 AG 2.15.1.3.14.028 OTU 1 seq prokMSA_id:042542 AY028207 Marine BBFL7 2.15.1.3.14.029 OTU 1 seq prokMSA_id:043541 AF419212 antarctic soil clone bh6.45 2.15.1.3.14.030 OTU 1 seq prokMSA_id:046475 AF235117 Cytophaga sp. KT0803 2.15.1.3.14.031 OTU 2 seqs prokMSA_id:046941 AF218782 Muricauda ruestringensis prokMSA_id:060401 AF513435 Flavobacteriaceae LA8 2.15.1.3.14.032 OTU 1 seq prokMSA_id:048628 AF195440 CFB group kpc113rc 2.15.1.3.14.033 OTU 1 seq prokMSA_id:049407 AF427479 Cytophaga sp. 41-DBG2 2.15.1.3.14.034 OTU 1 seq prokMSA_id:049678 AF417899 antarctic soil clone bh3.20 2.15.1.3.14.035 OTU 1 seq prokMSA_id:060400 AF513434 Psychroflexus sp. LA1 2.15.1.3.14.036 OTU 1 seq prokMSA_id:061974 AJ244698 Flavobacterium sp. V4.BS.09 marine isolate 2.15.1.3.14.037 OTU 3 seqs prokMSA_id:062484 AF513956 CFB group clone LA1-A3N prokMSA_id:062486 AF513958 Flavobacteriaceae clone LAS-B39N prokMSA_id:062485 AF513959 Flavobacteriaceae clone LA1-B21N 2.15.1.3.14.038 OTU 1 seq prokMSA_id:063861 AF452596 CFB group clone ML110M-1 2.15.1.3.14.039 OTU 1 seq prokMSA_id:066040 AB073567 Cytophaga sp. T-588 2.15.1.3.14.040 OTU 1 seq prokMSA_id:066475 AY100618 clone cvf63045 2.15.1.3.14.041 OTU 1 seq prokMSA_id:067316 AF493687 Flavobacteriaceae str. SW084 2.15.1.3.14.042 OTU 1 seq prokMSA_id:067317 AF493686 Flavobacteriaceae str. SW334 2.15.1.3.14.043 OTU 1 seq prokMSA_id:067319 AF493684 Flavobacteriaceae str. SW062 2.15.1.3.14.044 OTU 1 seq prokMSA_id:067320 AF493683 Flavobacteriaceae str. SW058 2.15.1.3.14.045 OTU 4 seqs prokMSA_id:075852 AF536383 Marine KMM 3909 prokMSA_id:075202 AF536384 Marine KMM 3910 prokMSA_id:076207 AF536385 Marine KMM 3936 prokMSA_id:076110 AF536386 Marine KMM 3937 2.15.1.3.14.046 OTU 1 seq prokMSA_id:077007 AF550584 Bacteroidetes Ko310 2.15.1.3.14.047 OTU 1 seq prokMSA_id:077931 AY171327 clone s37 2.15.1.3.14.048 OTU 4 seqs prokMSA_id:080722 AF468406 Arctic sea ice ARK10004 prokMSA_id:080782 AF468416 Arctic sea ice ARK10129 prokMSA_id:080936 AF468419 Arctic sea ice ARK10138 prokMSA_id:080029 AF468435 Arctic sea ice ARK9985 2.15.1.3.14.049 OTU 3 seqs prokMSA_id:080388 AF468305 clone ARKICE-35 prokMSA_id:082156 AY165588 Arctic sea ice clone ARKXV/1-145 prokMSA_id:081071 AY165589 Arctic sea ice clone ARKXV/1-43 2.15.1.3.14.050 OTU 1 seq prokMSA_id:084199 AY241446 Flavobacterium sp. UST020129-011 2.15.1.3.14.051 OTU 1 seq prokMSA_id:088955 AY319330 Flavobacteriaceae Gaa02_04net2_3 2.15.1.3.14.052 OTU 1 seq prokMSA_id:089871 AJ567549 Bacteroidetes clone MBMPE34 2.15.1.3.14.053 OTU 1 seq prokMSA_id:091408 AY344419 clone L4-84 2.15.1.3.14.054 OTU 1 seq prokMSA_id:093145 AY354728 Bacteroidetes clone PLY-P1-99 2.15.1.3.14.055 OTU 1 seq prokMSA_id:094133 AY259503 Flavobacteriaceae 'BSD CS 32' 2.15.1.3.14.056 OTU 1 seq prokMSA_id:097808 AY382614 clone CS399 2.15.1.3.14.999 poor quality 62 seqs prokMSA_id:030318 AB001332 Marine GY9 prokMSA_id:045872 AB001333 Marine MC8 prokMSA_id:032111 AB008031 Cytophaga sp. A5 prokMSA_id:048596 AB008032 Cytophaga sp. A11 prokMSA_id:027073 AB008033 Cytophaga sp. A14 prokMSA_id:040537 AB008034 Cytophaga sp. A15 prokMSA_id:043275 AB008035 Cytophaga sp. A20 prokMSA_id:027987 AB008036 Cytophaga sp. A38 prokMSA_id:035731 AB008037 Cytophaga sp. A12 prokMSA_id:034704 AB008038 Cytophaga sp. A32 prokMSA_id:025800 AB008039 Cytophaga sp. A35 prokMSA_id:018978 AB008040 Cytophaga sp. A41 prokMSA_id:027977 AB041314 ECS44 prokMSA_id:002412 AF001370 str. IC157. prokMSA_id:074270 AF259617 CFB group CtaxMed-46 prokMSA_id:024619 AF323554 Bay of Fundy BA10-1D prokMSA_id:047415 AF343927 Marine NBF6 prokMSA_id:044063 AF367852 KmC prokMSA_id:027551 AF417881 antarctic soil clone bh2.4 prokMSA_id:025263 AF417890 antarctic soil clone bh2.54 prokMSA_id:045695 AF419200 antarctic soil clone bh5.49 prokMSA_id:029132 AF419207 antarctic soil clone bh6.11 prokMSA_id:049734 AF419211 antarctic soil clone bh6.44 prokMSA_id:032229 AF419214 antarctic soil clone bh6.53 prokMSA_id:020796 AF419280 antarctic soil clone bh7.10 prokMSA_id:030406 AF420427 antarctic soil bh7.22 prokMSA_id:033028 AF432276 Cytophaga sp. FO-0d-57 prokMSA_id:039105 AF432279 Cytophaga sp. FO-6d-109 prokMSA_id:025257 AF447178 antarctic soil clone bh2.59 prokMSA_id:040814 AF460872 Marine SIMO-IS108 prokMSA_id:064169 AF477842 prokaryote isolate DGGE Band 1-UIB 22% pond prokMSA_id:064130 AF477893 'A4-UMH 8% pond' prokMSA_id:043911 AJ002570 Marine isolate DPT1.4 prokMSA_id:071623 AJ244690 Flavobacterium sp. V4.BE.50 prokMSA_id:061978 AJ244692 Flavobacterium sp. V4.MO.36 prokMSA_id:071262 AJ244693 Flavobacterium sp. V4.MO.33 marine isolate prokMSA_id:061972 AJ244694 Flavobacterium sp. V4.MO.35 marine isolate prokMSA_id:073237 AJ400527 clone Hb1-K72 prokMSA_id:066164 AJ487523 flavobacterium sp. clone NCh1-AS8 prokMSA_id:066162 AJ487524 flavobacterium sp. clone NCh2-LL4 prokMSA_id:066160 AJ487527 flavobacterium sp. clone NCh17-AT12 prokMSA_id:066152 AJ487534 flavobacterium sp. clone NCh31-AS6 prokMSA_id:098026 AJ510044 clone BH-9 prokMSA_id:090634 AJ568006 Flavobacterium sp. isolate DGGE-14 prokMSA_id:065188 AY095571 CFB group WR-41 prokMSA_id:055835 AY095599 CFB group pNS-8 prokMSA_id:056332 AY095768 CFB group HI-17 prokMSA_id:056811 AY149776 Cytophaga sp. SIMO CL-S29-12 prokMSA_id:080330 AY193050 clone LLB14 prokMSA_id:094264 AY259513 Flavobacteriaceae 'BSE RB 01' prokMSA_id:002430 D12665 Cytophaga latercula str. Lewin SIO-1 ATCC 23177 . prokMSA_id:002426 M58769 Cytophaga latercula prokMSA_id:002418 M92278 Psychroflexus gondwanensis DSM 5423 . prokMSA_id:042536 U64017 SCB40 prokMSA_id:050279 U70708 cytophagales OM271 prokMSA_id:031794 U78932 Marine R2A5 prokMSA_id:002416 X89287 clone 35a. prokMSA_id:002417 X89301 clone 54a. prokMSA_id:002415 X89304 clone 1111. prokMSA_id:002425 X89305 clone 1411. prokMSA_id:002422 Z77521 unnamed organism. prokMSA_id:040100 Z77573 1-140 C6 2.15.1.3.15 PSH.BURTONENSIS_SUBGROUP 296 seqs 2.15.1.3.15.002 OTU 3 seqs prokMSA_id:002463 AB015545 Cytophaga sp. str. BD2-17. prokMSA_id:041045 AF424342 CFB group MERTZ_2CM_286 prokMSA_id:046124 AF424359 CFB group MERTZ_0CM_363 2.15.1.3.15.003 OTU 1 seq prokMSA_id:002462 AB017597 Flavobacterium 5N-3 str. 5N-3. 2.15.1.3.15.004 OTU 1 seq prokMSA_id:002461 AF142833 clone BURTON-13. 2.15.1.3.15.005 OTU 1 seq prokMSA_id:002460 AF142850 clone BURTON-32. 2.15.1.3.15.006 OTU 2 seqs prokMSA_id:002452 AF001368 str. SW17. prokMSA_id:051041 AF142962 TAYNAYA-16 2.15.1.3.15.009 OTU 1 seq prokMSA_id:002447 AF142870 clone BURTON-52. 2.15.1.3.15.011 OTU 1 seq prokMSA_id:016434 AF424361 CFB group MERTZ_0CM_386 2.15.1.3.15.012 OTU 11 seqs prokMSA_id:026808 AF142907 ORGANIC-5 prokMSA_id:041070 AF277501 SIC.B8119 prokMSA_id:050729 AF277508 SIC.815 prokMSA_id:026364 AF277538 ARCTIC.123 prokMSA_id:017712 AF277559 SIC.B8127 prokMSA_id:016467 AF277562 SIC.B8236 prokMSA_id:024141 AF333085 clone SIC.8-19 prokMSA_id:034569 AF354619 Cytophagales Arctic96AD-4 prokMSA_id:044944 AF425754 CFB group clone MERTZ_0CM_50 prokMSA_id:079974 AF468277 clone ARKIA-137 prokMSA_id:061113 AF530147 Cf. Cytophaga sp. MGP-67 2.15.1.3.15.013 OTU 4 seqs prokMSA_id:017313 AF327035 coastal Alaskan Arctic AWS98-7d prokMSA_id:046270 AF327036 coastal Alaskan Arctic AWS98-19d prokMSA_id:018364 AF354618 Cytophagales Arctic97A-13 prokMSA_id:092842 AY354727 Bacteroidetes clone PLY-P1-98 2.15.1.3.15.014 OTU 7 seqs prokMSA_id:046252 AF195444 CFB group kbc13 prokMSA_id:026719 AF277556 SIC.B8012 prokMSA_id:039816 AF328168 clone KS15 prokMSA_id:051877 AF328169 clone KS16 prokMSA_id:049040 AF328170 clone KS17 prokMSA_id:017681 AF328176 clone KS27 prokMSA_id:030111 AF328177 clone KS28 2.15.1.3.15.016 OTU 1 seq prokMSA_id:018210 AF419286 antarctic soil clone bh8.17 2.15.1.3.15.017 OTU 2 seqs prokMSA_id:026032 AF469384 clone CTD28B prokMSA_id:018627 AJ278780 strain R7695 2.15.1.3.15.018 OTU 1 seq prokMSA_id:020135 Z88587 isolate HRV11 2.15.1.3.15.019 OTU 1 seq prokMSA_id:020283 AF142868 BURTON-50 2.15.1.3.15.020 OTU 1 seq prokMSA_id:020330 AY038572 Cytophagales clone CD2C7 2.15.1.3.15.021 OTU 2 seqs prokMSA_id:025577 AJ344133 Gelidibacter mesophilus strain 2SM29T prokMSA_id:021203 AJ344134 Gelidibacter mesophilus strain 2SM28 2.15.1.3.15.023 OTU 11 seqs prokMSA_id:050524 AF440716 CFB group ARCT1-38 prokMSA_id:017872 AJ400340 marine ZD0203 prokMSA_id:037253 AJ400347 marine ZD0403 prokMSA_id:068987 AY033305 Cytophagales MB11E04 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:092504 AY354733 Bacteroidetes clone PLY-P2-9 prokMSA_id:092924 AY354734 Bacteroidetes clone PLY-P2-10 prokMSA_id:093047 AY354735 Bacteroidetes clone PLY-P2-11 prokMSA_id:092424 AY354738 Bacteroidetes clone PLY-P2-42 prokMSA_id:092374 AY354739 Bacteroidetes clone PLY-P2-55 prokMSA_id:093067 AY354745 Bacteroidetes clone PLY-P3-9 prokMSA_id:092712 AY354803 Bacteroidetes clone PLY-P3-1 2.15.1.3.15.024 OTU 1 seq prokMSA_id:022322 AF328203 clone KS66 2.15.1.3.15.025 OTU 5 seqs prokMSA_id:024934 AF203475 Cytophaga marinoflava prokMSA_id:022447 AF235111 Cytophaga sp. KT11ds2 prokMSA_id:061968 AJ244703 Flavobacterium sp. V4.MS.12 prokMSA_id:085151 AJ542652 Cytophaga sp. 4301-10/1 isolate 4301-10/1 prokMSA_id:082233 AY167315 Cytophaga marinoflava strain ANT9103 2.15.1.3.15.026 OTU 1 seq prokMSA_id:023739 AF205366 Gelidibacter sp. QSSC7-1 2.15.1.3.15.027 OTU 1 seq prokMSA_id:024477 AF328157 clone KS1 2.15.1.3.15.028 OTU 1 seq prokMSA_id:026631 AF205367 Gelidibacter sp. QSSC5-7 2.15.1.3.15.029 OTU 1 seq prokMSA_id:026835 AF366003 Marine CFB-group SB9 2.15.1.3.15.030 OTU 2 seqs prokMSA_id:027314 AF277550 Gelidibacter McMurdo.124 prokMSA_id:087495 AY285940 Flavobacteriaceae G11A1 2.15.1.3.15.031 OTU 1 seq prokMSA_id:056043 AF406541 CFB group clone AEGEAN_179 2.15.1.3.15.032 OTU 1 seq prokMSA_id:028913 AF277563 SIC.B9002 2.15.1.3.15.033 OTU 1 seq prokMSA_id:031307 Z88588 isolate HRV16 2.15.1.3.15.034 OTU 1 seq prokMSA_id:032923 AY038388 CFB group clone CD3D3 2.15.1.3.15.035 OTU 1 seq prokMSA_id:035713 AF286039 Saltmarsh clone LCP-72 2.15.1.3.15.036 OTU 2 seqs prokMSA_id:036868 AF355051 Cytophagales Arctic97A-14 prokMSA_id:084379 AY274871 Bacteroidetes clone SBI5 2.15.1.3.15.037 OTU 1 seq prokMSA_id:037359 AF125323 Flexibacter sp. D8 small subunit 2.15.1.3.15.038 OTU 1 seq prokMSA_id:037756 AF417865 antarctic soil clone bh1.8 2.15.1.3.15.039 OTU 1 seq prokMSA_id:055449 AF513399 Gelidibacter sp. 13-4 2.15.1.3.15.040 OTU 1 seq prokMSA_id:039273 AY038573 CFB group clone CD2A8 2.15.1.3.15.041 OTU 1 seq prokMSA_id:045624 AF277484 Psychroserpens SIC.42372 2.15.1.3.15.042 OTU 1 seq prokMSA_id:046048 AF359548 Marine SCRIPPS_413 2.15.1.3.15.043 OTU 1 seq prokMSA_id:046707 Y17132 Psychroserpens aff. burtonensis 2.15.1.3.15.044 OTU 1 seq prokMSA_id:049506 AB032514 Marine MBIC1357 strain:MBIC1357 2.15.1.3.15.045 OTU 1 seq prokMSA_id:050817 AF388892 Flavobacteriaceae clone GOBB3-CL282 2.15.1.3.15.046 OTU 2 seqs prokMSA_id:051895 AF386740 Flavobacterium sp. 7BT prokMSA_id:062483 AF513955 Flavobacteriaceae clone LA1-B7 2.15.1.3.15.047 OTU 1 seq prokMSA_id:059799 AY133391 clone BB2_82 2.15.1.3.15.049 OTU 16 seqs prokMSA_id:002464 AB015262 Cytophaga sp. str. JTB244. prokMSA_id:002448 AF142823 Psychroserpens BURTON-3. prokMSA_id:044567 AF277500 Psychroserpens SIC.8118 prokMSA_id:036469 AF277537 Psychroserpens ARCTIC.121 prokMSA_id:048422 AF327034 coastal Alaskan Arctic AWS98-11d prokMSA_id:081008 AF468421 Arctic sea ice associated ARK10144 prokMSA_id:081005 AF468427 Arctic sea ice ARK10217 prokMSA_id:080530 AF468430 Arctic sea ice ARK10267 prokMSA_id:059800 AY133390 clone OB3_41 prokMSA_id:081033 AY167341 Psychroserpens sp. ARK10236 prokMSA_id:087312 AY285947 Flavobacteriaceae G512M2 prokMSA_id:087721 AY285948 Flavobacteriaceae G512M1 prokMSA_id:002450 L10948 marine snow associated clone agg13. prokMSA_id:002445 U62911 Psychroserpens burtonensis ACAM 167. prokMSA_id:002446 U62912 Psychroserpens burtonensis ACAM 181. prokMSA_id:002438 U62913 Psychroserpens burtonensis ACAM 188 . 2.15.1.3.15.050 OTU 2 seqs prokMSA_id:059801 AY133388 clone OB3_89 prokMSA_id:059802 AY133389 clone OB3_130 2.15.1.3.15.051 OTU 2 seqs prokMSA_id:060635 AF406539 CFB group clone AEGEAN_136 prokMSA_id:060625 AF406550 CFB group clone AEGEAN_129 2.15.1.3.15.052 OTU 1 seq prokMSA_id:061130 AF530130 Cf. Cytophaga sp. MGP-3 2.15.1.3.15.053 OTU 1 seq prokMSA_id:061189 AY080916 clone UC1 2.15.1.3.15.054 OTU 2 seqs prokMSA_id:066039 AB073568 Cytophaga sp. I-601 prokMSA_id:066037 AB073570 Cytophaga sp. I-1147 2.15.1.3.15.055 OTU 1 seq prokMSA_id:067313 AF493690 Flavobacteriaceae str. SW325 2.15.1.3.15.056 OTU 1 seq prokMSA_id:067318 AF493685 Flavobacteriaceae str. SW152 2.15.1.3.15.057 OTU 1 seq prokMSA_id:067390 AJ456974 Gelidibacter sp. GSc-1 isolate GSc-1 2.15.1.3.15.058 OTU 2 seqs prokMSA_id:071563 AF254113 Abyssal strain AII3 prokMSA_id:070870 AF254114 Abyssal strain AIII4 2.15.1.3.15.059 OTU 1 seq prokMSA_id:070926 AB073562 Cytophaga sp. MBIC04684 2.15.1.3.15.060 OTU 1 seq prokMSA_id:071519 Z88574 isolate HOS12 2.15.1.3.15.061 OTU 1 seq prokMSA_id:072771 AF493689 Flavobacteriaceae str. SW269 2.15.1.3.15.062 OTU 1 seq prokMSA_id:073211 AF359540 Marine ATAM173a_3 2.15.1.3.15.063 OTU 1 seq prokMSA_id:074645 AJ297467 flexibacterium Sva0755 2.15.1.3.15.066 OTU 8 seqs prokMSA_id:078255 AY172248 clone 242 prokMSA_id:078401 AY172265 clone 2175 prokMSA_id:078310 AY172268 clone 2115 prokMSA_id:077795 AY172270 clone 2170 prokMSA_id:078126 AY172279 clone 324 prokMSA_id:077827 AY172289 clone 37 prokMSA_id:078289 AY172294 clone 326 prokMSA_id:077594 AY172305 clone 329 2.15.1.3.15.067 OTU 1 seq prokMSA_id:077800 AY171336 clone s46 2.15.1.3.15.068 OTU 1 seq prokMSA_id:077894 AY171351 clone s63 2.15.1.3.15.069 OTU 1 seq prokMSA_id:077908 AY171385 clone s54m 2.15.1.3.15.070 OTU 1 seq prokMSA_id:078012 AY172238 clone 2112 2.15.1.3.15.071 OTU 1 seq prokMSA_id:078251 AY171304 clone s67 2.15.1.3.15.072 OTU 1 seq prokMSA_id:078285 AY171312 clone s36 2.15.1.3.15.073 OTU 1 seq prokMSA_id:079594 AF382130 clone ZA3907c 2.15.1.3.15.074 OTU 1 seq prokMSA_id:079768 AY187688 Bacteroidetes KMM 3901 2.15.1.3.15.075 OTU 1 seq prokMSA_id:079808 AF468304 clone ARKICE-155 2.15.1.3.15.076 OTU 7 seqs prokMSA_id:080102 AF468228 clone ARKCH2Br2-40 prokMSA_id:080559 AF468243 clone ARKDMS-33 prokMSA_id:083637 AY274840 Bacteroidetes clone 2C5 prokMSA_id:085666 AY274841 Bacteroidetes clone 2D9 prokMSA_id:084711 AY274852 Bacteroidetes clone CF30 prokMSA_id:085804 AY274858 Bacteroidetes clone CF58 prokMSA_id:084921 AY274864 Bacteroidetes clone CF77 2.15.1.3.15.077 OTU 1 seq prokMSA_id:080226 AF468303 clone ARKICE-115 2.15.1.3.15.078 OTU 2 seqs prokMSA_id:080619 AY187689 Bacteroidetes KMM 3902 prokMSA_id:080229 AY187690 Bacteroidetes KMM 3914 2.15.1.3.15.079 OTU 1 seq prokMSA_id:080735 AY193274 Bacteroidetes clone BTM37 2.15.1.3.15.080 OTU 1 seq prokMSA_id:080764 AF468407 Arctic sea ice associated ARK10007 2.15.1.3.15.082 OTU 7 seqs prokMSA_id:002451 AF001367 Gelidibacter algens str. IC147. prokMSA_id:020811 AF205369 Gelidibacter sp. QSSC2-8 prokMSA_id:084329 AJ441008 Antarctic R-9217 strain R-9217 prokMSA_id:081654 AY218549 clone KD1-108 prokMSA_id:002443 U62914 Gelidibacter algens str. C8ST5 ACAM 536. prokMSA_id:017502 U62915 Gelidibacter algens ACAM 550 prokMSA_id:002444 U62916 Gelidibacter algens str. A296 ACAM 551. 2.15.1.3.15.083 OTU 1 seq prokMSA_id:082874 AF539760 Bacteroidetes E42 2.15.1.3.15.084 OTU 1 seq prokMSA_id:083149 AY177722 Flavobacteriaceae BIA 2.15.1.3.15.085 OTU 1 seq prokMSA_id:083782 AY228461 Pseudocytophaga algae KMM 3557 2.15.1.3.15.086 OTU 1 seq prokMSA_id:086326 AY274856 Bacteroidetes clone CF4 2.15.1.3.15.087 OTU 1 seq prokMSA_id:086406 AY274844 Bacteroidetes clone CF100 2.15.1.3.15.088 OTU 1 seq prokMSA_id:086531 AY243096 Bacteroidetes KMM 3912 2.15.1.3.15.089 OTU 1 seq prokMSA_id:088682 AY327883 Bacteroidetes clone SF_C4-B5 2.15.1.3.15.090 OTU 1 seq prokMSA_id:089947 AY327884 Bacteroidetes clone SF_C5-D8 2.15.1.3.15.091 OTU 1 seq prokMSA_id:090177 AY317117 Sphingobacteria SKA50 2.15.1.3.15.092 OTU 1 seq prokMSA_id:091580 AY345434 K2-15 2.15.1.3.15.093 OTU 1 seq prokMSA_id:092350 AY354772 Bacteroidetes clone PLY-P1-33 2.15.1.3.15.094 OTU 1 seq prokMSA_id:092778 AY354711 Bacteroidetes clone PLY-P1-17 2.15.1.3.15.095 OTU 1 seq prokMSA_id:092998 AY354712 Bacteroidetes clone PLY-P1-34 2.15.1.3.15.096 OTU 1 seq prokMSA_id:093188 AY259508 Flavobacteria 'BSD S1 20' 2.15.1.3.15.097 OTU 4 seqs prokMSA_id:093315 AY259506 Gelidibacter sp. 'BSD S1 18' prokMSA_id:093591 AY259507 Gelidibacter sp. 'BSD S1 19' prokMSA_id:093475 AY259511 Gelidibacter sp. 'BSD S2 03' prokMSA_id:093990 AY259512 Gelidibacter sp. 'BSD S2 05' 2.15.1.3.15.098 OTU 1 seq prokMSA_id:093722 AY259501 Flavobacteriaceae 'BSA CS 02' 2.15.1.3.15.099 OTU 1 seq prokMSA_id:093747 AY259505 Flavobacteriaceae 'BSD RB 42' 2.15.1.3.15.100 OTU 1 seq prokMSA_id:094012 AY259509 Cytophaga sp. 'BSD S1 22' 2.15.1.3.15.101 OTU 1 seq prokMSA_id:094355 AY373423 clone A95 complete 2.15.1.3.15.102 OTU 1 seq prokMSA_id:094702 AY373402 clone A141 2.15.1.3.15.103 OTU 1 seq prokMSA_id:094724 AY373417 clone A75 2.15.1.3.15.104 OTU 1 seq prokMSA_id:095118 AY373408 clone A29 complete 2.15.1.3.15.105 OTU 1 seq prokMSA_id:098270 AY375121 clone F38 2.15.1.3.15.999 poor quality 118 seqs prokMSA_id:034625 AB008045 Flexibacter sp. A45 prokMSA_id:030437 AB022299 Obligately oligotrophic POC-121 prokMSA_id:035823 AB022300 Obligately oligotrophic POCPN-73 prokMSA_id:021128 AB022333 obligately oligotrophic POC-111 prokMSA_id:021057 AB041313 ECS43 prokMSA_id:045113 AB041315 ECS45 prokMSA_id:093556 AB118682 Bacteroidetes U-9 strain:U-9 prokMSA_id:039592 AF001369 Gelidibacter sp. IC158 prokMSA_id:002453 AF001371 str. IC159. prokMSA_id:002439 AF001372 str. IC164. prokMSA_id:034672 AF025568 Cytophagales str. MED25 prokMSA_id:049610 AF025962 Cytophagales str. AND6 prokMSA_id:047217 AF141474 Cytophagales clone CRE-FL57 prokMSA_id:024222 AF141488 Cytophagales clone CRE-FL75 prokMSA_id:020423 AF141500 Cytophagales clone CRE-PA11 prokMSA_id:025599 AF141502 Cytophagales clone CRE-PA15 prokMSA_id:039293 AF141552 Cytophagales clone CRE-PA85 prokMSA_id:077562 AF188882 CompB prokMSA_id:077492 AF188883 CompA prokMSA_id:027467 AF195445 Gelidibacter kpa02rc prokMSA_id:017780 AF209011 vent ML-15 prokMSA_id:042329 AF257297 marine cytophaga DHB-3 prokMSA_id:024586 AF261059 Gelidibacter algens prokMSA_id:018510 AF283842 Arctic sea ice AWS-4U1 prokMSA_id:045796 AF283865 Arctic sea ice AWS-4M5 prokMSA_id:025831 AF283866 Arctic sea ice AWS-4M6 prokMSA_id:026427 AF283867 Arctic sea ice AWS-4M8 prokMSA_id:048234 AF323553 Bay of Fundy BA10-1C prokMSA_id:025203 AF358018 clone LO13.4 prokMSA_id:068027 AF365723 clone BT60DS4BA11 prokMSA_id:068013 AF365741 clone BT60DS4BD11 prokMSA_id:067979 AF365784 clone BM89PA1BbC7 prokMSA_id:067947 AF365823 clone BT60PA10BC11 prokMSA_id:067941 AF365833 clone BT60PA10BD12 prokMSA_id:041336 AF366002 Marine CFB-group SB12 prokMSA_id:020838 AF366004 Marine CFB-group SB17 prokMSA_id:025304 AF367846 Km5 prokMSA_id:020657 AF367851 SB12 prokMSA_id:050682 AF417893 antarctic soil clone bh1.44 prokMSA_id:027623 AF417901 antarctic soil clone bh3.37 prokMSA_id:021533 AF417911 antarctic soil clone bh4.59 prokMSA_id:047785 AF419284 antarctic soil clone bh8.6 prokMSA_id:037205 AF419287 antarctic soil clone bh8.26 prokMSA_id:034471 AF432270 Cytophaga sp. FO-0d-8 prokMSA_id:043557 AF432280 Cytophaga sp. FO-6d-82 prokMSA_id:017046 AF432291 Cytophaga sp. FO-26d-5 prokMSA_id:028237 AF432302 Flexibacter sp. 0%N-0d-44 prokMSA_id:020084 AF441869 CFB group clone CD13H9 prokMSA_id:042608 AF441966 CFB group clone CD12A9 prokMSA_id:046452 AF442027 CFB group clone CD14B3 prokMSA_id:046366 AF442071 CFB group clone CD1401D1 prokMSA_id:032220 AF460877 Marine SIMO-IS113 prokMSA_id:030512 AF460882 Marine SIMO-IS118 prokMSA_id:081070 AF466705 CFB group clone DBS2 prokMSA_id:071960 AF466893 CFB group isolate DGGE band C36 prokMSA_id:070357 AF466904 CFB group isolate DGGE band D6 prokMSA_id:056078 AF466917 CFB group isolate DGGE band B12 prokMSA_id:072000 AF466926 isolate DGGE band D37 prokMSA_id:044483 AF473945 CFB group 140-1-6 prokMSA_id:073270 AF513398 Gelidibacter sp. 4-3 prokMSA_id:055299 AF544895 Bacteroidetes clone A191-6 prokMSA_id:044168 AJ298372 marine AY-56 prokMSA_id:031597 AJ318940 Flexibacter sp. FOA-1 strain FOA-1 prokMSA_id:068834 AJ344492 CFB group OI-1-2 strain OI-1-2 prokMSA_id:068832 AJ344497 CFB group OI-14-4 strain OI-14-4 prokMSA_id:023379 AJ344500 CFB group SFLA10 strain SFLA10 prokMSA_id:087415 AJ561163 Cythophaga sp. clone RB_OIL 344 prokMSA_id:044990 AY030100 D21 small subunit prokMSA_id:024301 AY038457 Cytophagales clone CD3F12 prokMSA_id:028469 AY038534 Cytophagales clone CD4E12 prokMSA_id:017316 AY038536 CFB group clone CD1E11 prokMSA_id:051310 AY038577 clone CD2A1 prokMSA_id:065176 AY095586 CFB group pV-16 prokMSA_id:065125 AY095683 CFB group OR-112 prokMSA_id:055960 AY095712 CFB group OR-227 prokMSA_id:065076 AY095740 CFB group NL-140F prokMSA_id:065066 AY095753 CFB group NL-150 prokMSA_id:065064 AY095754 CFB group NL-5R prokMSA_id:065016 AY095837 CFB group ARCT2-35 prokMSA_id:065011 AY095844 CFB group ARCT2-47 prokMSA_id:077849 AY172263 clone 2181 prokMSA_id:079731 AY193289 Bacteroidetes clone BolA4 prokMSA_id:082630 AY220353 Bacteroidetes UVps prokMSA_id:093229 AY259504 Flavobacteriaceae 'BSD RB 40' prokMSA_id:082634 AY263715 Bacteroidetes clone FBR1 prokMSA_id:083135 AY263730 Bacteroidetes clone FBR16 prokMSA_id:083002 AY274869 Bacteroidetes clone SBI26 prokMSA_id:084397 AY274870 Bacteroidetes clone SBI31 prokMSA_id:092549 AY354736 Bacteroidetes clone PLY-P2-26 prokMSA_id:002436 M58770 Cytophaga marinoflava prokMSA_id:040154 U64013 Flexibacter sp. prokMSA_id:028062 U64014 SCB37 prokMSA_id:023139 U64026 SCB49 prokMSA_id:031716 U78935 Marine R2A132 prokMSA_id:002432 X89274 clone 12a. prokMSA_id:002435 X89280 clone 19a. prokMSA_id:002467 X89283 clone 26a. prokMSA_id:002437 X89285 clone 33a. prokMSA_id:002433 X89286 clone 34a. prokMSA_id:002465 X89288 clone 37a. prokMSA_id:002449 X89292 clone 42a. prokMSA_id:002466 X89316 clone 3911. prokMSA_id:002431 X89337 clone 811. prokMSA_id:002434 X89344 clone 8511. prokMSA_id:002440 Z77355 unnamed organism. prokMSA_id:002441 Z77439 unnamed organism. prokMSA_id:002454 Z77471 unnamed organism. prokMSA_id:002455 Z77478 unnamed organism. prokMSA_id:002442 Z77483 unnamed organism. prokMSA_id:002456 Z77487 unnamed organism. prokMSA_id:002457 Z77489 unnamed organism. prokMSA_id:002458 Z77505 unnamed organism. prokMSA_id:026576 Z77578 1-700 C11 prokMSA_id:074667 Z77597 1-700 C7 prokMSA_id:074767 Z77605 2-100 C1.5 prokMSA_id:044607 Z77607 2-100 C1.8 prokMSA_id:002459 Z77619 str. 2-100 C4. prokMSA_id:040331 Z77640 2-400 C2/2.11 2.15.1.3.16 ENVIRONMENTAL_CLONE_FL7_SUBGROUP 13 seqs 2.15.1.3.16.001 OTU 1 seq prokMSA_id:002469 L10937 clone FL7. 2.15.1.3.16.002 OTU 1 seq prokMSA_id:055843 AJ441216 CFB group clone P. palm C/A 100 2.15.1.3.16.003 OTU 3 seqs prokMSA_id:026293 AF419681 CS_B009 prokMSA_id:078061 AJ535217 Cytophagales clone Hyd24-39 prokMSA_id:077994 AJ535223 Cytophagales clone Hyd24-17 2.15.1.3.16.004 OTU 1 seq prokMSA_id:051701 AF354616 Cytophagales Arctic96B-24 2.15.1.3.16.005 OTU 3 seqs prokMSA_id:085631 AY274850 Bacteroidetes clone CF20 prokMSA_id:086177 AY274860 Bacteroidetes clone CF6 prokMSA_id:086070 AY274861 Bacteroidetes clone CF91 2.15.1.3.16.006 OTU 1 seq prokMSA_id:092178 AY354149 clone pIR3BC05 2.15.1.3.16.007 OTU 1 seq prokMSA_id:092574 AY354795 Bacteroidetes clone PLY-P2-75 2.15.1.3.16.999 poor quality 2 seqs prokMSA_id:065075 AY095741 CFB group NL-140R prokMSA_id:002468 X89276 clone 14a. 2.15.1.4 CYTOPHAGA_GROUP_II 280 seqs 2.15.1.4.001 OTU 1 seq prokMSA_id:002478 AB015264 Cytophaga sp. str. JTB250. 2.15.1.4.002 OTU 1 seq prokMSA_id:002477 AJ224942 str. Koll-22. 2.15.1.4.003 OTU 1 seq prokMSA_id:002476 AF029041 clone SB-5. 2.15.1.4.004 OTU 1 seq prokMSA_id:002475 AF068798 VC2.1 Bac22 complete 2.15.1.4.005 OTU 2 seqs prokMSA_id:002474 AF170738 str. QSSC1-22. prokMSA_id:061105 AF530158 Cf. Cytophaga sp. MGP-14AN 2.15.1.4.006 OTU 1 seq prokMSA_id:002473 AF142822 clone BURTON-2. 2.15.1.4.007 OTU 1 seq prokMSA_id:002472 AF142838 clone BURTON-18. 2.15.1.4.008 OTU 1 seq prokMSA_id:002471 AF142849 clone BURTON-31. 2.15.1.4.009 OTU 1 seq prokMSA_id:002470 L10946 marine snow associated clone agg58. 2.15.1.4.010 OTU 1 seq prokMSA_id:016462 AB056676 equine intestinal clone:YT18 2.15.1.4.011 OTU 1 seq prokMSA_id:016915 AF371924 clone p-2534-18B5 2.15.1.4.012 OTU 1 seq prokMSA_id:022127 AF195425 CFB group kpj60f 2.15.1.4.013 OTU 1 seq prokMSA_id:022199 AF469378 clone 33-PA90B99 2.15.1.4.014 OTU 1 seq prokMSA_id:022467 AF419688 CS_B047 2.15.1.4.015 OTU 1 seq prokMSA_id:023486 AF469376 clone 33-PA44B99 2.15.1.4.016 OTU 2 seqs prokMSA_id:025412 AJ408086 equine intestinal sp. CW17 clone CW17 prokMSA_id:025978 AJ408217 equine intestinal sp. PL09 clone PL09 2.15.1.4.017 OTU 1 seq prokMSA_id:025565 AF424351 CFB group MERTZ_0CM_154 2.15.1.4.018 OTU 1 seq prokMSA_id:028458 AF424337 CFB group MERTZ_2CM_101 2.15.1.4.019 OTU 1 seq prokMSA_id:028607 AF402976 clone 2.15.1.4.020 OTU 1 seq prokMSA_id:028868 AJ318122 clone BIfcii9 2.15.1.4.021 OTU 1 seq prokMSA_id:029416 AJ296579 GR-Sh1-209 clone GR-Sh1-209 2.15.1.4.022 OTU 1 seq prokMSA_id:033969 AB056708 equine intestinal clone:YT26 2.15.1.4.023 OTU 1 seq prokMSA_id:035151 AF316797 Crater Lake CL0-79 2.15.1.4.024 OTU 1 seq prokMSA_id:036040 AJ408112 equine intestinal sp. DL25 clone DL25 2.15.1.4.025 OTU 1 seq prokMSA_id:036801 AF417883 antarctic soil clone bh2.14 2.15.1.4.026 OTU 1 seq prokMSA_id:036986 AF424333 MERTZ_2CM_1 2.15.1.4.027 OTU 1 seq prokMSA_id:040551 AB041317 ECS47 2.15.1.4.028 OTU 1 seq prokMSA_id:042624 AJ296576 GR-WP33-68 clone GR-WP33-68 2.15.1.4.029 OTU 1 seq prokMSA_id:042743 AJ347763 Bacteroidetes clone ST-12K33 2.15.1.4.030 OTU 1 seq prokMSA_id:045081 AJ347762 Bacteroidetes clone ST-12K19 2.15.1.4.031 OTU 1 seq prokMSA_id:046988 AJ344202 isolate BUG-219 2.15.1.4.032 OTU 1 seq prokMSA_id:057464 AJ441217 CFB group clone P. palm C/A 20 2.15.1.4.033 OTU 1 seq prokMSA_id:057460 AJ441220 CFB group clone P. palm C 67 2.15.1.4.034 OTU 1 seq prokMSA_id:057445 AJ441241 CFB group clone P. palm A 249 2.15.1.4.035 OTU 1 seq prokMSA_id:051343 AF417884 antarctic soil clone bh2.16 2.15.1.4.036 OTU 1 seq prokMSA_id:051958 AF337883 gold mine D28 2.15.1.4.037 OTU 1 seq prokMSA_id:052704 AF275921 AA26 2.15.1.4.038 OTU 1 seq prokMSA_id:059793 AY133397 clone BB2_87 2.15.1.4.039 OTU 1 seq prokMSA_id:059794 AY133396 clone OB3_166 2.15.1.4.040 OTU 1 seq prokMSA_id:060863 AY135910 clone SG2-74 2.15.1.4.041 OTU 1 seq prokMSA_id:062694 AF507864 Bacteroidetes clone ML635J-44 2.15.1.4.042 OTU 1 seq prokMSA_id:062698 AF507861 Bacteroidetes clone ML623J-20 2.15.1.4.043 OTU 1 seq prokMSA_id:062699 AF507860 Bacteroidetes clone ML635J-1 2.15.1.4.044 OTU 1 seq prokMSA_id:066112 AB074940 CFB group clone:KU30 2.15.1.4.045 OTU 1 seq prokMSA_id:066632 AY094494 Cytophagaceae clone 1-13 2.15.1.4.046 OTU 1 seq prokMSA_id:066951 AJ306736 clone SHA-5 2.15.1.4.047 OTU 1 seq prokMSA_id:067273 AF495416 clone M09 2.15.1.4.048 OTU 1 seq prokMSA_id:071827 AF469375 clone 33-PA63B98 2.15.1.4.049 OTU 1 seq prokMSA_id:072909 AF419687 CS_B045 2.15.1.4.050 OTU 1 seq prokMSA_id:075375 AY164451 clone ULIB-72 2.15.1.4.051 OTU 1 seq prokMSA_id:076230 AY164371 clone BLIB-33 2.15.1.4.052 OTU 2 seqs prokMSA_id:076883 AY164387 Flavobacteria clone BLIB-89 prokMSA_id:076614 AY164427 Flavobacteria clone DLIB-96 2.15.1.4.053 OTU 1 seq prokMSA_id:076864 AY164421 clone DLIB-85 2.15.1.4.054 OTU 1 seq prokMSA_id:077100 AY164378 clone BLIB-51 2.15.1.4.055 OTU 1 seq prokMSA_id:077203 AJ519404 flavobacterium sp. clone JG37-AG-150 2.15.1.4.056 OTU 1 seq prokMSA_id:077721 AJ535258 Cytophagales clone Hyd89-72 2.15.1.4.057 OTU 1 seq prokMSA_id:078181 AY171350 clone s31 2.15.1.4.058 OTU 1 seq prokMSA_id:078219 AY171315 clone s73 2.15.1.4.059 OTU 1 seq prokMSA_id:078229 AJ535228 clone Hyd24-66 2.15.1.4.060 OTU 1 seq prokMSA_id:079195 AF382107 clone ZA2626c 2.15.1.4.061 OTU 1 seq prokMSA_id:079223 AB100010 sequences clone: IndB4-9 2.15.1.4.062 OTU 3 seqs prokMSA_id:079419 AF382098 clone ZA2204c prokMSA_id:079233 AF382099 clone ZA2211c prokMSA_id:079287 AF382106 clone ZA2623c 2.15.1.4.063 OTU 1 seq prokMSA_id:079316 AF382110 clone ZA2515c 2.15.1.4.064 OTU 2 seqs prokMSA_id:079360 AJ431254 Cytophaga sp. BHI60-95B strain BHI60-95B prokMSA_id:095863 AJ576004 Bacteroidetes clone T6-Ph07-985 2.15.1.4.065 OTU 1 seq prokMSA_id:079430 AB100009 sequences clone: IndB4-4 2.15.1.4.066 OTU 1 seq prokMSA_id:079755 AB094817 clone:OHKB2.48 2.15.1.4.067 OTU 1 seq prokMSA_id:079827 AF449769 CFB group clone ML1228M-4 2.15.1.4.068 OTU 1 seq prokMSA_id:080284 AF468245 clone ARKDMS-428 2.15.1.4.069 OTU 1 seq prokMSA_id:080463 AY188307 clone KD3-67 2.15.1.4.070 OTU 1 seq prokMSA_id:080480 AB094864 clone:OHKB6.4 2.15.1.4.071 OTU 1 seq prokMSA_id:080562 AF468278 clone ARKIA-105 2.15.1.4.072 OTU 1 seq prokMSA_id:081010 AF449766 CFB group clone ML1228J-16 2.15.1.4.073 OTU 1 seq prokMSA_id:081256 AY218574 clone KD2-140 2.15.1.4.074 OTU 1 seq prokMSA_id:081270 AY216455 clone KM68 2.15.1.4.075 OTU 2 seqs prokMSA_id:081973 AJ548900 clone BIOEST-11 prokMSA_id:081584 AJ548918 clone BIOEST-29 2.15.1.4.076 OTU 1 seq prokMSA_id:081597 AY216454 clone KM66 2.15.1.4.077 OTU 1 seq prokMSA_id:081706 AJ548902 clone BIOEST-13 2.15.1.4.078 OTU 1 seq prokMSA_id:081966 AY218633 clone KD4-4 2.15.1.4.079 OTU 1 seq prokMSA_id:082061 AY216445 clone KM02 2.15.1.4.080 OTU 1 seq prokMSA_id:082153 AJ548901 clone BIOEST-12 2.15.1.4.081 OTU 8 seqs prokMSA_id:085376 AY274845 Bacteroidetes clone CF101 prokMSA_id:082487 AY274849 Bacteroidetes clone CF17 prokMSA_id:085577 AY274863 Bacteroidetes clone CF96 prokMSA_id:092836 AY354767 Bacteroidetes clone PLY-P1-8 prokMSA_id:092532 AY354771 Bacteroidetes clone PLY-P1-27 prokMSA_id:092519 AY354773 Bacteroidetes clone PLY-P1-43 prokMSA_id:092169 AY354780 Bacteroidetes clone PLY-P1-89 prokMSA_id:092640 AY354782 Bacteroidetes clone PLY-P1-119 2.15.1.4.082 OTU 2 seqs prokMSA_id:083479 AY197409 clone B03R023 prokMSA_id:082742 AY197418 clone B04R020 2.15.1.4.083 OTU 1 seq prokMSA_id:083084 AY244965 rumen clone BS11 2.15.1.4.084 OTU 1 seq prokMSA_id:083423 AY244886 rumen clone BF8 2.15.1.4.085 OTU 1 seq prokMSA_id:085048 AY226330 Bacteroidetes clone UBBB-38 2.15.1.4.086 OTU 1 seq prokMSA_id:085468 AY239573 clone CARB_ER2_8 2.15.1.4.087 OTU 1 seq prokMSA_id:085707 AJ495662 CFB group isolate SB-16 2.15.1.4.088 OTU 1 seq prokMSA_id:085897 AY231336 clone ER2_11 2.15.1.4.089 OTU 1 seq prokMSA_id:086162 AY274853 Bacteroidetes clone CF36 2.15.1.4.090 OTU 1 seq prokMSA_id:086661 AY274846 Bacteroidetes clone CF108 2.15.1.4.091 OTU 1 seq prokMSA_id:088058 AY321399 clone L33 2.15.1.4.092 OTU 1 seq prokMSA_id:088378 AY315244 rumen clone JRCH30 2.15.1.4.093 OTU 1 seq prokMSA_id:089442 AY327210 clone ZB30 2.15.1.4.094 OTU 1 seq prokMSA_id:089486 AY327209 clone ZB26 2.15.1.4.095 OTU 1 seq prokMSA_id:089648 AY327206 clone ZB29 2.15.1.4.096 OTU 1 seq prokMSA_id:091255 AY340819 clone SR_FBR_E3 2.15.1.4.097 OTU 1 seq prokMSA_id:091513 AY344418 clone K2-30-6 2.15.1.4.098 OTU 5 seqs prokMSA_id:093022 AY354769 Bacteroidetes clone PLY-P1-20 prokMSA_id:092073 AY354774 Bacteroidetes clone PLY-P1-44 prokMSA_id:093109 AY354778 Bacteroidetes clone PLY-P1-74 prokMSA_id:092681 AY354779 Bacteroidetes clone PLY-P1-77 prokMSA_id:092827 AY354781 Bacteroidetes clone PLY-P1-118 2.15.1.4.099 OTU 15 seqs prokMSA_id:092238 AY354716 Bacteroidetes clone PLY-P1-65 prokMSA_id:092358 AY354746 Bacteroidetes clone PLY-P3-14 prokMSA_id:092619 AY354747 Bacteroidetes clone PLY-P3-16 prokMSA_id:092582 AY354750 Bacteroidetes clone PLY-P3-20 prokMSA_id:093103 AY354756 Bacteroidetes clone PLY-P3-60 prokMSA_id:092109 AY354757 Bacteroidetes clone PLY-P3-71 prokMSA_id:092695 AY354760 Bacteroidetes clone PLY-P3-82 prokMSA_id:092228 AY354761 Bacteroidetes clone PLY-P3-83 prokMSA_id:092269 AY354762 Bacteroidetes clone PLY-P3-84 prokMSA_id:092642 AY354764 Bacteroidetes clone PLY-P3-88 prokMSA_id:092705 AY354765 Bacteroidetes clone PLY-P3-93 prokMSA_id:092288 AY354791 Bacteroidetes clone PLY-P2-58 prokMSA_id:092085 AY354807 Bacteroidetes clone PLY-P3-27 prokMSA_id:092835 AY354808 Bacteroidetes clone PLY-P3-29 prokMSA_id:092515 AY354812 Bacteroidetes clone PLY-P3-99 2.15.1.4.100 OTU 2 seqs prokMSA_id:092096 AY354805 Bacteroidetes clone PLY-P3-7 prokMSA_id:092390 AY354806 Bacteroidetes clone PLY-P3-8 2.15.1.4.101 OTU 1 seq prokMSA_id:092393 AY354770 Bacteroidetes clone PLY-P1-25 2.15.1.4.102 OTU 1 seq prokMSA_id:092480 AY354811 Bacteroidetes clone PLY-P3-43 2.15.1.4.103 OTU 1 seq prokMSA_id:092656 AY354789 Bacteroidetes clone PLY-P2-51 2.15.1.4.104 OTU 1 seq prokMSA_id:092850 AY354804 Bacteroidetes clone PLY-P3-5 2.15.1.4.105 OTU 1 seq prokMSA_id:093042 AY354714 Bacteroidetes clone PLY-P1-61 2.15.1.4.106 OTU 2 seqs prokMSA_id:093138 AY354730 Bacteroidetes clone PLY-P1-107 prokMSA_id:093092 AY354752 Bacteroidetes clone PLY-P3-42 2.15.1.4.107 OTU 1 seq prokMSA_id:093150 AY354775 Bacteroidetes clone PLY-P1-56 2.15.1.4.108 OTU 1 seq prokMSA_id:096812 AJ575988 Bacteroidetes clone T6-Ph07-881 2.15.1.4.109 OTU 1 seq prokMSA_id:097930 AY381283 clone Lgja-55 2.15.1.4.999 poor quality 136 seqs prokMSA_id:049031 AB003434 prokMSA_id:027035 AB003435 prokMSA_id:021786 AB003448 prokMSA_id:033391 AB062687 clone:DGGE band A prokMSA_id:068484 AB081534 Oil-K-1 prokMSA_id:072218 AB081537 Oil-M2-4 prokMSA_id:068464 AB081555 T-2 prokMSA_id:079370 AB099996 sequences clone: IndB1-22 prokMSA_id:079194 AB100013 sequences clone: IndB4-25 prokMSA_id:040311 AF107316 freshwater LCK-01 prokMSA_id:018237 AF114666 cytophaga DCM-FREE-35 prokMSA_id:033541 AF141543 Cytophagales clone CRE-PA75 prokMSA_id:048142 AF207849 marine OTU_D prokMSA_id:041025 AF208985 vent ML-1a prokMSA_id:022881 AF208986 vent ML-1b prokMSA_id:044110 AF208987 vent ML-1c prokMSA_id:069765 AF208988 vent ML-1d prokMSA_id:046636 AF208989 vent ML-1e prokMSA_id:025743 AF208990 vent ML-1f prokMSA_id:035538 AF231438 Humic substances enrichment clone B21 prokMSA_id:039490 AF289868 Cytophagales Kmlps0-2 prokMSA_id:050242 AF289870 Cytophagales Kmlps0-12 prokMSA_id:050636 AF289880 Cytophagales Kmlps3-2 prokMSA_id:047568 AF289888 Cytophagales Kmlps3-12 prokMSA_id:048091 AF289898 Cytophagales Kmlps3-31 prokMSA_id:030102 AF298764 TX2 prokMSA_id:039589 AF314456 PHOS-HE62 prokMSA_id:035614 AF314458 PHOS-HE77 prokMSA_id:070003 AF320939 Lake Michigan sediment LMBA22 prokMSA_id:073460 AF323555 Bay of Fundy BA10-1E prokMSA_id:068154 AF365578 clone BT60MF2BA10 prokMSA_id:068153 AF365579 clone BT60MF2BA11 prokMSA_id:068097 AF365641 clone BM89DS1BbC3 prokMSA_id:068095 AF365643 clone BM89DS1BbD1 prokMSA_id:067975 AF365792 clone BM89PA1BbE8 prokMSA_id:042956 AF392704 clone CDD5 prokMSA_id:060653 AF406509 CFB group clone AEGEAN_103_27F prokMSA_id:047198 AF417882 antarctic soil clone bh2.10 prokMSA_id:016671 AF417886 antarctic soil clone bh2.41 prokMSA_id:017271 AF417892 antarctic soil clone bh2.58 prokMSA_id:042882 AF417904 antarctic soil clone bh4.10 prokMSA_id:031799 AF417906 antarctic soil clone bh4.20 prokMSA_id:048247 AF417917 antarctic soil clone bh5.9 prokMSA_id:035073 AF419199 antarctic soil clone bh5.45 prokMSA_id:036963 AF419206 antarctic soil clone bh6.8 prokMSA_id:044109 AF432285 CFB group FO-26d-18 prokMSA_id:057554 AF438166 prokMSA_id:017218 AF441960 CFB group clone CD12B4 prokMSA_id:022642 AF441993 CFB group clone CD12E10 prokMSA_id:019881 AF442011 CFB group clone CD12D4 prokMSA_id:021633 AF447142 clone TDC-S1:26 prokMSA_id:080448 AF449776 CFB group clone ML310M-50 prokMSA_id:063863 AF452590 CFB group clone ML110J-25 prokMSA_id:063860 AF452593 CFB group clone ML110J-4 prokMSA_id:063859 AF452597 CFB group clone ML110M-11 prokMSA_id:056008 AF452893 Cytophagales prokMSA_id:069391 AF466916 CFB group isolate DGGE band B11 prokMSA_id:018488 AF469383 clone CTD9B prokMSA_id:064144 AF477874 clone 22-UMH 22% pond prokMSA_id:066426 AF497891 CFB group isolate WL8-22 prokMSA_id:062689 AF507863 Bacteroidetes clone ML623J-47 prokMSA_id:058808 AF540040 Bacteroidetes DGGE gel band ESR BR 5 prokMSA_id:059462 AF540797 clone DP11u32 prokMSA_id:042359 AJ011662 DGGE amplificate BS1.1 prokMSA_id:072257 AJ250895 marine DIL-11 prokMSA_id:070153 AJ298378 marine BY-19 prokMSA_id:074339 AJ298379 marine AY-32 prokMSA_id:041410 AJ298380 marine BY-71 prokMSA_id:049256 AJ298381 marine BY-7 prokMSA_id:045609 AJ301577 GR-WP39-16 prokMSA_id:022035 AJ301579 GR-WP33-44 prokMSA_id:074408 AJ311503 cytophaga Sau 2 prokMSA_id:036671 AJ318195 clone BIvii28 prokMSA_id:056284 AJ319830 SB-10/22-CS prokMSA_id:059251 AJ319831 SB-11/16-Cd prokMSA_id:059250 AJ319832 SB-9/21-CS prokMSA_id:070721 AJ319833 SB-39-TW prokMSA_id:059249 AJ319834 SB-35-TW prokMSA_id:073596 AJ319851 SB-66-Cd prokMSA_id:059221 AJ319866 SB-25-CS prokMSA_id:045340 AJ421121 clone C11-K8 prokMSA_id:042285 AJ421162 clone C7-K9 prokMSA_id:028585 AJ422239 Cytophaga sp. isolate DGGE-4 prokMSA_id:066157 AJ487529 cytophaga sp. clone NCh19-AT12 prokMSA_id:066153 AJ487533 cytophaga sp. clone NCh28-AS7 prokMSA_id:083282 AJ495613 CFB group isolate SA-13 prokMSA_id:082679 AJ495616 CFB group isolate SA-16 prokMSA_id:085711 AJ495632 CFB group isolate SA-33 prokMSA_id:085568 AJ495651 CFB group isolate SB-4 prokMSA_id:085979 AJ495652 CFB group isolate SB-5 prokMSA_id:086216 AJ495658 CFB group isolate SB-12 prokMSA_id:055533 AJ517876 clone N63.2 prokMSA_id:055290 AJ518192 clone Mul2P1-25 prokMSA_id:057271 AJ518210 clone Mul2P1-69 prokMSA_id:057261 AJ518223 clone Mul2P2-13 prokMSA_id:057201 AJ518309 clone Mul2P3-93 prokMSA_id:057198 AJ518311 clone Mul2P3-95 prokMSA_id:057021 AJ518539 clone Qui4P1-40 prokMSA_id:056979 AJ518593 clone Qui4P2-57 prokMSA_id:056976 AJ518595 clone Qui4P2-60 prokMSA_id:056682 AJ518674 clone Sai4P1-27 prokMSA_id:088760 AJ568003 Cytophaga sp. DGGE-19 isolate DGGE-19 prokMSA_id:024947 AY038476 Cytophagales clone CD2E4 prokMSA_id:030284 AY048190 CFB group prokMSA_id:084692 AY092184 clone BI104 prokMSA_id:083054 AY092185 clone BI41 prokMSA_id:086579 AY092186 clone BI19 prokMSA_id:084474 AY092187 clone BI23 prokMSA_id:086073 AY092205 clone BF46 prokMSA_id:065088 AY095727 CFB group NL-115 prokMSA_id:085713 AY197392 clone B01R032 prokMSA_id:086487 AY226328 clone UBBB-3 prokMSA_id:086554 AY231331 clone ER2_6 prokMSA_id:084874 AY263712 Bacteroidetes clone FBE1 prokMSA_id:085943 AY263713 Bacteroidetes clone FBE2 prokMSA_id:083165 AY263718 Bacteroidetes clone FBR4 prokMSA_id:088433 AY311772 clone YRCF13 prokMSA_id:091560 AY337037 Cytophagales clone SL-6a prokMSA_id:091888 AY340843 isolate DGGE fragment SR_FBR_E1 prokMSA_id:091204 AY340846 isolate DGGE fragment SR_FBR_E5 prokMSA_id:092395 AY354744 Bacteroidetes clone PLY-P3-3 prokMSA_id:092715 AY354867 Bacteroidetes clone AGG58-6 prokMSA_id:093127 AY354868 Bacteroidetes clone AGG58-21 prokMSA_id:092044 AY354869 Bacteroidetes clone AGG58-30 prokMSA_id:092632 AY354870 Bacteroidetes clone AGG58-35 prokMSA_id:092028 AY354871 Bacteroidetes clone AGG58-42 prokMSA_id:092036 AY354873 Bacteroidetes clone AGG58-71 prokMSA_id:092597 AY354874 Bacteroidetes clone AGG58-87 prokMSA_id:093051 AY354875 Bacteroidetes clone AGG58-153 prokMSA_id:092745 AY354876 Bacteroidetes clone AGG58-166 prokMSA_id:092916 AY354877 Bacteroidetes clone AGG58-172 prokMSA_id:092552 AY354878 Bacteroidetes clone AGG58-179 prokMSA_id:092830 AY354879 Bacteroidetes clone AGG58-210 prokMSA_id:092265 AY354880 Bacteroidetes clone AGG58-221 prokMSA_id:092177 AY354883 Bacteroidetes clone AGG58-261 prokMSA_id:092046 AY354892 Bacteroidetes clone AGG58-384 2.15.2 SPHINGOBACTERIUM_GROUP 298 seqs 2.15.2.001 OTU 2 seqs prokMSA_id:002504 AJ007872 clone LD3. prokMSA_id:022691 AJ438176 Sphingobacterium faecium strain DSM 11690T 2.15.2.002 OTU 2 seqs prokMSA_id:026308 AJ438177 Sphingobacterium thalpophilum strain DSM 11723T prokMSA_id:002499 X67851 Sphingobacterium thalpophilum. 2.15.2.003 OTU 1 seq prokMSA_id:002497 AF142861 clone BURTON-43. 2.15.2.004 OTU 9 seqs prokMSA_id:002491 AB020205 Sphingobacterium multivorum str. OM-A8. prokMSA_id:036348 AB076874 Sphingobacterium sp. clone:OS1L-21 prokMSA_id:077995 AB098594 Sphingobacterium sp. TUT1026 prokMSA_id:079272 AB100738 Sphingobacterium multivorum prokMSA_id:079519 AB100739 Sphingobacterium multivorum prokMSA_id:063191 AJ496037 Sphingobacterium sp. p11E prokMSA_id:078193 AJ514447 clone AS1o8 prokMSA_id:098836 AY378200 Extreme arid zone HX-IE47 prokMSA_id:096830 AY395022 Bacteroidetes NAB18 2.15.2.005 OTU 1 seq prokMSA_id:002488 AF097805 clone 49511. 2.15.2.006 OTU 1 seq prokMSA_id:002486 AB022889 str. MBIC4147. 2.15.2.007 OTU 1 seq prokMSA_id:002485 AF170741 str. QSSC5-1. 2.15.2.008 OTU 5 seqs prokMSA_id:002484 AB020206 Sphingobacterium OM-E81 str. OM-E81. prokMSA_id:039088 AJ438170 Pedobacter cryoconitis strain DSM 14825T prokMSA_id:029206 AJ438174 Pedobacter piscium strain DSM 11725T prokMSA_id:095052 AJ583425 Pedobacter sp. HHS22 strain HHS22 prokMSA_id:096233 AJ585231 Pedobacter cryoconitis 2.15.2.009 OTU 4 seqs prokMSA_id:002483 AF070444 Bacteroides b-17BO str. b-17BO. prokMSA_id:028059 AF233292 Tuber borchii symbiont b-Z43 prokMSA_id:051168 AF233293 Tuber borchii symbiont b-1BO prokMSA_id:051029 AF233294 Tuber borchii symbiont b-10RA 2.15.2.010 OTU 20 seqs prokMSA_id:018213 AF224809 clone Car56rb prokMSA_id:022136 AF329951 Pedobacter heparinus strain LMG 10339 prokMSA_id:018113 AF329952 Pedobacter heparinus strain LMG 10344 prokMSA_id:048969 AF329953 Pedobacter africanus strain LMG 10353 prokMSA_id:031635 AF329954 Pedobacter africanus strain LMG 10346 prokMSA_id:036845 AF329955 Pedobacter africanus strain LMG 10347 prokMSA_id:024725 AF329956 Pedobacter africanus strain LMG 10348 prokMSA_id:051652 AF329957 Pedobacter africanus strain LMG 10349 prokMSA_id:049377 AF329962 Pedobacter sp. LMG 9525 prokMSA_id:043377 AF329963 Pedobacter sp. LMG 10343 prokMSA_id:036521 AF329964 Pedobacter sp. LMG 9527 prokMSA_id:036195 AF329965 Pedobacter sp. LMG 10354 prokMSA_id:020232 AF329966 Pedobacter sp. LMG 10342 prokMSA_id:067490 AF493692 Sphingobacteriaceae str. EP316 prokMSA_id:040607 AJ438171 Pedobacter africanus strain DSM 12126T prokMSA_id:052839 AJ438172 Pedobacter heparinus strain DSM 2366T prokMSA_id:039221 AY038609 clone GL182.29 prokMSA_id:028476 AY038610 clone GL184.1 prokMSA_id:068958 AY038611 clone GL182.33 prokMSA_id:002481 M11657 Pedobacter heparinus str. HIM 762-3 ATCC 13125 . 2.15.2.011 OTU 2 seqs prokMSA_id:017550 AF336356 Wuba47 prokMSA_id:067493 AF493691 Sphingobacteriaceae str. EP211 2.15.2.012 OTU 1 seq prokMSA_id:074412 AY038770 CFB group clone TAF-A131 2.15.2.013 OTU 1 seq prokMSA_id:018686 AJ344204 isolate LES-167 2.15.2.014 OTU 1 seq prokMSA_id:019131 AJ318181 Bacteroidetes clone BIsii5 2.15.2.015 OTU 1 seq prokMSA_id:059539 AF538748 CAGY10 strain CAGY10 2.15.2.016 OTU 1 seq prokMSA_id:019498 AF348716 Cytophaga sp. clone MPD-32 2.15.2.017 OTU 1 seq prokMSA_id:019806 AF445665 CFB group clone SM1C08 2.15.2.018 OTU 5 seqs prokMSA_id:047251 AF329958 Pedobacter saltans strain LMG 10337 prokMSA_id:021963 AF329959 Pedobacter saltans strain LMG 10338 prokMSA_id:043539 AF329960 Pedobacter saltans strain LMG 10340 prokMSA_id:030571 AF329961 Pedobacter saltans strain LMG 10341 prokMSA_id:042382 AJ438173 Pedobacter saltans strain DSM 12145T 2.15.2.019 OTU 1 seq prokMSA_id:024148 AF388029 Flavobacterium sp. 36 2.15.2.020 OTU 2 seqs prokMSA_id:026222 AF329967 Pedobacter sp. LMG 10351 prokMSA_id:026343 AF385549 Flavobacterium-like sp. oral clone AZ123 2.15.2.021 OTU 1 seq prokMSA_id:026452 AF255646 clone Ebpr7 2.15.2.022 OTU 1 seq prokMSA_id:028263 AF380159 Sphingobacterium sp. F1 2.15.2.023 OTU 1 seq prokMSA_id:029808 AF314433 PHOS-HE51 2.15.2.024 OTU 1 seq prokMSA_id:030987 AF324208 CFB group clone pA47 2.15.2.025 OTU 3 seqs prokMSA_id:031038 AF328192 clone KS51f prokMSA_id:075974 AY162137 Flavobacterium sp. MTN11 prokMSA_id:091480 AY337599 Bacteroidetes EC2 2.15.2.026 OTU 2 seqs prokMSA_id:073659 AJ493672 CFB group isolate 397c clone 17 prokMSA_id:069467 AJ493674 CFB group isolate 224 clone 5 2.15.2.027 OTU 1 seq prokMSA_id:031489 AJ295473 rape rhizosphere wr0012 2.15.2.028 OTU 1 seq prokMSA_id:031688 AJ318186 Bacteroidetes clone BIti3 2.15.2.029 OTU 3 seqs prokMSA_id:039822 AF445670 CFB group clone SM1D01 prokMSA_id:035334 AF445730 CFB group clone SM2F08 prokMSA_id:032271 AF445737 CFB group clone SM2G05 2.15.2.030 OTU 1 seq prokMSA_id:032790 AF424352 CFB group MERTZ_0CM_182 2.15.2.031 OTU 3 seqs prokMSA_id:050974 AJ295641 KF-Gitt2-34 prokMSA_id:075916 AJ519668 Cytophaga sp. clone GuBH2-AG-59 prokMSA_id:033630 AY038763 CFB group clone TAF-A115 2.15.2.032 OTU 1 seq prokMSA_id:033633 AJ252650 Agricultural soil clone SC-I-70 2.15.2.033 OTU 3 seqs prokMSA_id:047105 AF375835 Flavobacterium sp. C204B prokMSA_id:037473 AJ252710 Potato plant root clone RC-III-9 prokMSA_id:033665 AY039834 Flavobacterium sp. jshs26 2.15.2.034 OTU 1 seq prokMSA_id:034511 AY038767 CFB group clone TAF-A242 2.15.2.035 OTU 1 seq prokMSA_id:037703 AJ296577 GR-Sh2-12 clone GR-Sh2-12 2.15.2.036 OTU 1 seq prokMSA_id:038954 AF375846 Sphingobacterium sp. U1 2.15.2.037 OTU 1 seq prokMSA_id:040435 AF260710 Sphingobacterium sp. S3 2.15.2.038 OTU 1 seq prokMSA_id:041664 AF314428 PHOS-HE19 2.15.2.039 OTU 1 seq prokMSA_id:043436 AJ318187 Bacteroidetes clone BIti35 2.15.2.040 OTU 1 seq prokMSA_id:043819 AJ318173 Bacteroidetes clone BIsi29 2.15.2.041 OTU 1 seq prokMSA_id:044075 AJ318151 Bacteroidetes clone BIji46 2.15.2.042 OTU 1 seq prokMSA_id:045791 AJ252719 Potato plant root clone RC-III-43 2.15.2.043 OTU 1 seq prokMSA_id:046199 AY038766 CFB group clone TAF-A198 2.15.2.044 OTU 2 seqs prokMSA_id:046477 AJ438175 Flavobacterium mizutaii strain DSM 11724T prokMSA_id:048865 X67853 S.mizutae ATCC 33299T 2.15.2.045 OTU 1 seq prokMSA_id:046956 X89912 Sphingobacterium-like sp. PC1.9 strain PC1.9 2.15.2.046 OTU 1 seq prokMSA_id:047809 AB033630 Pedobacter sp. KP-2 2.15.2.047 OTU 1 seq prokMSA_id:071779 AY038764 CFB group clone TAF-A147 2.15.2.048 OTU 1 seq prokMSA_id:056235 AB078046 Flexibacter canadensis strain:IFO 15130 2.15.2.049 OTU 1 seq prokMSA_id:052137 AJ252602 Rhizosphere soil isolate RSI-35 2.15.2.050 OTU 1 seq prokMSA_id:060340 AF534201 clone Glu58 2.15.2.051 OTU 1 seq prokMSA_id:060790 AF491661 CFB group clone SFD1-19 2.15.2.052 OTU 1 seq prokMSA_id:062018 AF523337 clone P4-15 2.15.2.053 OTU 1 seq prokMSA_id:064427 AY102895 clone BCM3P-26B 2.15.2.054 OTU 1 seq prokMSA_id:064429 AY102893 clone BCM3P-18B 2.15.2.055 OTU 1 seq prokMSA_id:064433 AY102888 clone BCM1-6B 2.15.2.056 OTU 1 seq prokMSA_id:064443 AY102877 clone BCM1-14B 2.15.2.057 OTU 1 seq prokMSA_id:065426 AF513095 clone 47 2.15.2.058 OTU 1 seq prokMSA_id:065554 AY095412 yard-trimming-compost clone S-44 2.15.2.059 OTU 1 seq prokMSA_id:065570 AY095391 yard-trimming-compost clone S-19 2.15.2.060 OTU 1 seq prokMSA_id:065653 AF507738 soil clone S170 2.15.2.061 OTU 1 seq prokMSA_id:066465 AY100627 clone cvf116080 2.15.2.062 OTU 1 seq prokMSA_id:066760 AJ459411 Sphingobacterium spiritivorum strain DSM 2582 2.15.2.063 OTU 1 seq prokMSA_id:067268 AF495419 clone F13.12 2.15.2.064 OTU 1 seq prokMSA_id:067285 AF495403 clone F10.42 2.15.2.065 OTU 1 seq prokMSA_id:067344 AF494539 Benzoapyrene-degrading BPC8 2.15.2.066 OTU 1 seq prokMSA_id:067625 AF489284 Sphingobacterium sp. isolate R550 2.15.2.067 OTU 1 seq prokMSA_id:068384 AF492000 Sphingobacterium sp. HC-6155 2.15.2.068 OTU 1 seq prokMSA_id:070270 AJ416172 clone Urk0-13 2.15.2.069 OTU 1 seq prokMSA_id:070559 AF385531 Pedobacter sp. oral clone AV100 2.15.2.070 OTU 1 seq prokMSA_id:073110 AY038765 CFB group clone TAF-A194 2.15.2.071 OTU 1 seq prokMSA_id:074255 AJ318176 clone BIsi7 2.15.2.072 OTU 1 seq prokMSA_id:075903 AF431573 CFB group clone S51.41PG 2.15.2.073 OTU 1 seq prokMSA_id:076120 AY150901 Bacteroidetes clone WYO21C and genes 2.15.2.074 OTU 1 seq prokMSA_id:077459 AY167837 Sphingobacterium sp. SAFR-022 2.15.2.075 OTU 1 seq prokMSA_id:078203 AB074637 CFB group clone:APe2_8 2.15.2.076 OTU 1 seq prokMSA_id:081220 AY218724 clone KD5-103 2.15.2.077 OTU 1 seq prokMSA_id:081939 AY218622 clone KD3-93 2.15.2.078 OTU 1 seq prokMSA_id:082023 AY218561 clone KD1-39 2.15.2.079 OTU 1 seq prokMSA_id:082708 AY274142 clone D136 2.15.2.080 OTU 1 seq prokMSA_id:082880 AY250892 Cytophagales clone TLT005 2.15.2.081 OTU 1 seq prokMSA_id:083060 AY226334 clone UBBB-56 2.15.2.082 OTU 1 seq prokMSA_id:083335 AF534435 clone TLM11/TLMdgge04 2.15.2.083 OTU 1 seq prokMSA_id:085119 AY239575 clone CARB_ER2_4 2.15.2.084 OTU 1 seq prokMSA_id:085313 AY250857 Cytophagales clone BPU107 2.15.2.085 OTU 1 seq prokMSA_id:085393 AF534434 clone TLM10/TLMdgge01 2.15.2.086 OTU 1 seq prokMSA_id:089631 AY336117 Sphingobacterium sp. PSD-6 2.15.2.087 OTU 1 seq prokMSA_id:091125 AY337604 Bacteroidetes LC9 2.15.2.088 OTU 1 seq prokMSA_id:092696 AY352451 Bacteroidetes clone NEVC1 2.15.2.089 OTU 1 seq prokMSA_id:093552 AJ551152 Pedobacter sp. An13 isolate An13 2.15.2.090 OTU 4 seqs prokMSA_id:097995 AJ575720 Bacteroidetes clone SW30 prokMSA_id:096908 AJ575721 Bacteroidetes clone SW35 prokMSA_id:097513 AJ575724 Bacteroidetes clone SW63 prokMSA_id:098093 AJ575725 Bacteroidetes clone SW66 2.15.2.091 OTU 1 seq prokMSA_id:098803 AJ585232 Bacteroidetes PS-KroK1 strain PS-KroK1 2.15.2.999 poor quality 152 seqs prokMSA_id:025518 AB011791 unclassified Cytophagales strain: G23010 prokMSA_id:027393 AB029417 24-45:1 prokMSA_id:033297 AB029902 Cytophagales str. B6 prokMSA_id:077080 AB075064 clone:KCRS8 prokMSA_id:076495 AB075066 clone:KCRS10 prokMSA_id:075447 AB075166 clone:TSS1 prokMSA_id:075758 AB075181 clone:TSRS13 prokMSA_id:068648 AB081808 seuence clone:A-01 prokMSA_id:055953 AB081809 seuence clone:A-02 prokMSA_id:083640 AB106914 Bacteroidetes 0-9 prokMSA_id:086507 AB106922 Bacteroidetes 5-4 prokMSA_id:086257 AB107167 Bacteroidetes W-2003a parital prokMSA_id:051491 AF010018 prokMSA_id:041586 AF010024 prokMSA_id:047943 AF010043 prokMSA_id:072715 AF059758 DgEPI2 prokMSA_id:045754 AF078332 Grassland soil clone sl1_105 prokMSA_id:054527 AF078408 Grassland soil clone sl3_601 prokMSA_id:074437 AF097793 clone 19519 prokMSA_id:070609 AF097810 clone 49516 prokMSA_id:044405 AF128664 soil C0162 prokMSA_id:023112 AF175618 WJGRT-75 prokMSA_id:039902 AF175623 WJGRT-86 prokMSA_id:019055 AF175638 WJGRT-121 prokMSA_id:037742 AF175651 WJGRT-151 prokMSA_id:021874 AF181904 clone 0d/10 prokMSA_id:047279 AF181929 clone 23d/12 prokMSA_id:072518 AF183150 Soil isolate KBS-EC2 prokMSA_id:070549 AF183159 Soil isolate KBS-LC9 prokMSA_id:022106 AF210806 Flavobacterium sp. CAFB-naph-6 prokMSA_id:018616 AF226187 Maize root ZmrIs20 prokMSA_id:020610 AF270943 clone IAFR101 prokMSA_id:032621 AF275930 AC08 prokMSA_id:038721 AF287047 Cytophaga sp. EC-B39 prokMSA_id:043198 AF314437 PHOS-HD32 prokMSA_id:030036 AF314438 PHOS-HC48 prokMSA_id:052030 AF361550 Flavobacterium mizutaii strain ST2 prokMSA_id:017410 AF414577 clone P3OB-52 prokMSA_id:067630 AF427161 Sphingobacterium sp. 7 prokMSA_id:050775 AF428650 clone CRD99-72 prokMSA_id:036436 AF428673 clone CRP99-19 prokMSA_id:028835 AF428691 clone CRP99-37 prokMSA_id:031236 AF428711 clone CRP99-57 prokMSA_id:032914 AF428715 clone CRP99-61 prokMSA_id:047215 AF428956 clone CR98-35-74 prokMSA_id:041417 AF428991 clone CR99-35-33 prokMSA_id:017891 AF429029 clone CR99-35-71 prokMSA_id:034938 AF429208 clone CR99-2-22 prokMSA_id:026718 AF429220 clone CR99-2-34 prokMSA_id:075246 AF431556 CFB group clone N12.14WL prokMSA_id:075233 AF431559 CFB group clone C17.30WL prokMSA_id:076972 AF431560 CFB group clone N26.152SM prokMSA_id:075712 AF431562 CFB group clone C32.26SM prokMSA_id:075732 AF431564 CFB group clone S37.44SM prokMSA_id:076021 AF431566 CFB group clone N41.131PG prokMSA_id:077194 AF431570 CFB group clone C47.32PG prokMSA_id:075543 AF431574 CFB group clone S51.57PG prokMSA_id:075685 AF431575 CFB group clone S52.11PG prokMSA_id:057550 AF438168 Cytophagales prokMSA_id:057547 AF438169 Capnocytophaga sp. prokMSA_id:021670 AF440285 clone PO5 prokMSA_id:052826 AF440290 clone PO10 prokMSA_id:058122 AF498698 Ellin316 prokMSA_id:058092 AF498730 Ellin348 prokMSA_id:074766 AF499379 clone JCL1-16 prokMSA_id:065762 AF507615 soil clone C196 prokMSA_id:065754 AF507625 soil clone C1118 prokMSA_id:065741 AF507639 soil clone C1183 prokMSA_id:059460 AF540798 clone dp10u4 prokMSA_id:059459 AF540799 clone dp10u8 prokMSA_id:059458 AF540800 clone DP10u15 prokMSA_id:059457 AF540801 clone Dp10u33 prokMSA_id:059404 AF540873 clone DP10u45 prokMSA_id:078829 AF543361 clone B prokMSA_id:078522 AF547043 417 prokMSA_id:078827 AF547052 327 prokMSA_id:052391 AJ005991 clone TBS13 prokMSA_id:050796 AJ009711 isolate K112 prokMSA_id:041011 AJ232836 clone LBS15 prokMSA_id:043454 AJ232880 clone LRE22 prokMSA_id:040635 AJ279491 Benzene-decomposing S21 strain S21 prokMSA_id:044648 AJ279495 Benzene-decomposing S5 strain S5 prokMSA_id:018095 AJ288290 Pedobacter heparinus isolate GR6 prokMSA_id:033030 AJ292924 WR8141 clone WR8141 prokMSA_id:033692 AJ308286 clone F99_24 prokMSA_id:032845 AJ344207 isolate LES-185 prokMSA_id:034735 AJ404513 EU1 prokMSA_id:061760 AJ416182 clone Sta1-06 prokMSA_id:061704 AJ416239 clone Sta4-22 prokMSA_id:061700 AJ416243 clone Sta3-32 prokMSA_id:061697 AJ416244 clone Sta4-33 prokMSA_id:044953 AJ419637 clone R13 prokMSA_id:049275 AJ421091 clone C9-K15 prokMSA_id:042234 AJ431291 CFB group clone 1_37 prokMSA_id:080766 AJ437118 clone k4-01 prokMSA_id:070717 AJ493673 CFB group isolate 400B clone 9 prokMSA_id:070797 AJ504560 isolate P2CN09 prokMSA_id:062533 AJ504598 isolate P2CN57 prokMSA_id:062514 AJ504619 isolate P2CN82 prokMSA_id:059989 AJ507500 clone VE24-98 prokMSA_id:093424 AJ581638 CFB group clone SB1 prokMSA_id:094740 AJ582238 Sphingobacteriales clone AC17 prokMSA_id:094659 AJ582247 Sphingobacteria clone AC41 prokMSA_id:094842 AJ582251 Sphingobacterium sp. clone AC55 prokMSA_id:094463 AJ582253 Sphingobacterium sp. clone AC58 prokMSA_id:094759 AJ582260 Pedobacter sp. clone AC107 prokMSA_id:093844 AJ582600 clone M90-01 prokMSA_id:093439 AJ582602 clone M90-04 prokMSA_id:094159 AJ582603 clone M90-06 prokMSA_id:094184 AJ582604 clone M90-08 prokMSA_id:071322 AY038768 CFB group clone TAF-B41 prokMSA_id:061626 AY043564 Sphingobacterium sp. 1S2.E10 prokMSA_id:061489 AY043731 CFB group clone NOW2.17WL prokMSA_id:056316 AY043732 CFB group clone NOW2.AWL prokMSA_id:061485 AY043733 CFB group clone NOW2.QWL prokMSA_id:056239 AY043734 CFB group clone NOS7.107WL prokMSA_id:061486 AY043735 CFB group clone NOS7.15WL prokMSA_id:061306 AY043951 CFB group clone SMS9.43WL prokMSA_id:026126 AY055086 clone B29 prokMSA_id:085969 AY092207 clone BI141 prokMSA_id:065582 AY095376 yard-trimming-compost clone S-2 prokMSA_id:065566 AY095393 yard-trimming-compost clone S-21 prokMSA_id:059128 AY121832 clone P-36R prokMSA_id:060883 AY135888 clone SG1-130 prokMSA_id:069448 AY146659 Bacteroidetes K5 prokMSA_id:076122 AY149203 DGGE band C1 prokMSA_id:080966 AY193038 Bacteroidetes clone FSA6 prokMSA_id:085434 AY263723 Bacteroidetes clone FBR9 prokMSA_id:083319 AY275473 Pedobacter cryoconitis prokMSA_id:085998 AY275474 Pedobacter cryoconitis prokMSA_id:086306 AY275498 Pedobacter sp. MSB3023 prokMSA_id:091693 AY336561 Flavobacterium sp. pf32 prokMSA_id:096783 AY391617 soil clone M1 prokMSA_id:096196 AY391697 soil clone M81 prokMSA_id:002492 D14020 Sphingobacterium thalpophilum IFO 14963 . prokMSA_id:002480 D14021 Sphingobacterium spiritivorum IFO 14975 . prokMSA_id:002500 D14024 Flavobacterium mizutaii IFO 14946 . prokMSA_id:002495 D14025 Sphingobacterium multivorum IFO 14947 . prokMSA_id:002502 D14026 Sphingobacterium spiritivorum JCM 1277 . prokMSA_id:002503 M58778 Sphingobacterium spiritivorum prokMSA_id:002490 M58779 Sphingobacterium thalpophilum prokMSA_id:002494 M58796 Flavobacterium mizutaii prokMSA_id:002496 M62793 Flexibacter canadensis ATCC 29591 . prokMSA_id:002501 U01879 Sphingobacterium multivorum. prokMSA_id:002479 U09780 clone JAP411. prokMSA_id:018093 U63955 Flavobacterium sp. prokMSA_id:002487 U68603 clone M16. prokMSA_id:002482 U68643 clone P7. prokMSA_id:002498 X84525 str. SBR1097. prokMSA_id:002493 X84558 unnamed organism. prokMSA_id:042857 X89915 Sphingobacterium-like sp. PC5.4D strain PC5.4D prokMSA_id:002489 X91814 Sphingobacterium comitans. 2.15.3 ENVIRONMENTAL_CLONE_5511_GROUP 2 seqs 2.15.3.999 poor quality 2 seqs prokMSA_id:002506 X89296 clone 52a. prokMSA_id:002505 X89329 clone 5511. 2.15.4 LEWINELLA_GROUP 619 seqs 2.15.4.1 ENVIRONMENTAL_CLONE_BDA1-14 1 seq 2.15.4.1.999 poor quality 1 seq prokMSA_id:002507 L11938 Sargasso Sea 10m depth clone BDA1-14. 2.15.4.2 FLX.SANCTI_SUBGROUP 464 seqs 2.15.4.2.001 OTU 1 seq prokMSA_id:002523 AF013562 unnamed organism. 2.15.4.2.002 OTU 1 seq prokMSA_id:002522 AF013539 unnamed organism. 2.15.4.2.003 OTU 1 seq prokMSA_id:002521 AF078775 Chitinophaga pinensis ACM 2034 . 2.15.4.2.004 OTU 1 seq prokMSA_id:002519 M58782 Flexibacter filiformis str. FX e 1 ATCC 29495 . 2.15.4.2.005 OTU 1 seq prokMSA_id:002512 M62798 Flavobacterium ferrugineum ATCC 13524 . 2.15.4.2.006 OTU 1 seq prokMSA_id:002509 U09452 str. R3. 2.15.4.2.007 OTU 6 seqs prokMSA_id:030109 AF315595 Cilia-associated respiratory R1 prokMSA_id:052190 AF315718 Cilia-associated respiratory R2 prokMSA_id:019140 AF315719 Cilia-associated respiratory R3 prokMSA_id:047307 AF315720 Cilia-associated respiratory R4 prokMSA_id:045825 AF316114 Cilia-associated respiratory M1 prokMSA_id:002508 L11886 str. NIH. 2.15.4.2.008 OTU 1 seq prokMSA_id:016356 AY037715 earthworm cast clone C065 2.15.4.2.009 OTU 1 seq prokMSA_id:016825 AJ290005 FukuN47 2.15.4.2.010 OTU 1 seq prokMSA_id:017675 AJ318153 clone BIjii2 2.15.4.2.011 OTU 1 seq prokMSA_id:018670 AF445092 clone Tc12 2.15.4.2.012 OTU 1 seq prokMSA_id:019885 AF145834 Metal-contaminated soil clone K20-37 2.15.4.2.014 OTU 1 seq prokMSA_id:022060 AF255633 clone Ebpr5 2.15.4.2.015 OTU 1 seq prokMSA_id:059356 AF502209 clone HP1A28 2.15.4.2.016 OTU 1 seq prokMSA_id:059355 AF502210 clone HP1B19 2.15.4.2.018 OTU 3 seqs prokMSA_id:022285 AF255626 clone Ebpr4 prokMSA_id:020042 AF314430 PHOS-HE31 prokMSA_id:082265 AY192048 Flavobacterium sp. 2.15.4.2.019 OTU 1 seq prokMSA_id:059324 AF502243 clone HP1U26 2.15.4.2.020 OTU 2 seqs prokMSA_id:022661 AF337866 gold mine D12 prokMSA_id:084350 AY274148 clone D143 2.15.4.2.021 OTU 1 seq prokMSA_id:022825 AF320945 Lake Michigan sediment LMBA29 2.15.4.2.022 OTU 3 seqs prokMSA_id:072978 AF361187 Flexibacter sp. CF 1 prokMSA_id:050093 AJ289963 isolate AH47 prokMSA_id:022940 AJ289993 FukuN21 2.15.4.2.023 OTU 2 seqs prokMSA_id:050373 AJ290025 GKS2-106 prokMSA_id:023391 AJ290028 GKS2-164 2.15.4.2.024 OTU 3 seqs prokMSA_id:023809 AF255636 clone Ebpr3 prokMSA_id:079326 AY187892 clone GG8 prokMSA_id:079305 AY187902 clone L7 2.15.4.2.026 OTU 4 seqs prokMSA_id:068460 AF459795 Symbiont cf. Flavobacterium of Acromyrmex octospinosus prokMSA_id:029854 AY038612 clone GL182.3 prokMSA_id:025133 AY038613 clone GL182.1 prokMSA_id:050765 AY053480 AT425_EubA6 2.15.4.2.027 OTU 6 seqs prokMSA_id:039882 AJ295463 rape rhizosphere wr0002 prokMSA_id:037328 AJ295464 rape rhizosphere wr0003 prokMSA_id:035540 AJ295472 rape rhizosphere wr0011 prokMSA_id:025213 AJ295507 rape rhizosphere wr0053 prokMSA_id:025227 AJ295511 rape rhizosphere wr0060 prokMSA_id:042289 AJ295528 rape rhizosphere wr0086 2.15.4.2.028 OTU 1 seq prokMSA_id:026459 AJ318185 Bacteroidetes clone BIti15 2.15.4.2.029 OTU 2 seqs prokMSA_id:027005 AJ290011 FukuN23 prokMSA_id:096745 AJ575723 Bacteroidetes clone SW56 2.15.4.2.031 OTU 5 seqs prokMSA_id:027196 AJ289987 FukuN104 prokMSA_id:052719 AJ289995 FukuN24 prokMSA_id:024125 AJ290049 FukuS140 prokMSA_id:096296 AJ575726 Bacteroidetes clone NE02 prokMSA_id:097081 AJ575727 Bacteroidetes clone NE03 2.15.4.2.032 OTU 1 seq prokMSA_id:027437 AF234056 #0319-2D13 2.15.4.2.033 OTU 1 seq prokMSA_id:027951 AJ252646 Agricultural soil clone SC-I-64 2.15.4.2.034 OTU 1 seq prokMSA_id:029927 AJ252697 Rhizosphere soil clone RSC-II-81 2.15.4.2.035 OTU 1 seq prokMSA_id:068877 AY038771 CFB group clone TAF-B8 2.15.4.2.036 OTU 1 seq prokMSA_id:031027 AJ318172 clone BIsi1 2.15.4.2.037 OTU 1 seq prokMSA_id:031329 AY038773 CFB group clone TAF-B76 2.15.4.2.038 OTU 1 seq prokMSA_id:031404 AJ290007 FukuN54 2.15.4.2.039 OTU 1 seq prokMSA_id:031613 AJ252615 Agricultural soil clone SC-I-12 2.15.4.2.040 OTU 1 seq prokMSA_id:058639 AB078049 Flexibacter filiformis strain:IFO 15056 2.15.4.2.041 OTU 1 seq prokMSA_id:032581 AY056829 Dipareforma spartinacae 2.15.4.2.042 OTU 1 seq prokMSA_id:058633 AB078055 Flexibacter japonensis strain:IFO 16041 2.15.4.2.043 OTU 2 seqs prokMSA_id:058622 AB078066 Flexibacter sancti strain:IFO 15057 prokMSA_id:058620 AB078067 Flexibacter sancti strain:IFO 16033 2.15.4.2.044 OTU 1 seq prokMSA_id:058621 AB078068 Flexibacter sancti strain:IFO 16034 2.15.4.2.045 OTU 1 seq prokMSA_id:033963 AY037571 soil clone S025 2.15.4.2.046 OTU 1 seq prokMSA_id:034759 AF403192 clone cvf122192 2.15.4.2.047 OTU 1 seq prokMSA_id:058374 AF368190 Haliscomenobacter sp. clone SBRT303 2.15.4.2.048 OTU 1 seq prokMSA_id:037034 AJ318121 Bacteroidetes clone BIfcii37 2.15.4.2.049 OTU 3 seqs prokMSA_id:040073 AJ290042 FukuS59 prokMSA_id:074837 AJ290053 FukuS188 prokMSA_id:096454 AJ575719 Bacteroidetes clone SW11 2.15.4.2.050 OTU 1 seq prokMSA_id:040226 AF337865 gold mine D44 2.15.4.2.051 OTU 1 seq prokMSA_id:040843 AF337873 gold mine D17 2.15.4.2.052 OTU 1 seq prokMSA_id:042738 AB076886 Flexibacter sp. clone:TSL-25 2.15.4.2.053 OTU 1 seq prokMSA_id:042740 AF423292 soil clone 760-2 2.15.4.2.054 OTU 1 seq prokMSA_id:043204 AF255627 clone Ebpr2 2.15.4.2.055 OTU 1 seq prokMSA_id:043686 AJ252591 Rhizosphere soil isolate RSI-24 2.15.4.2.056 OTU 1 seq prokMSA_id:068865 AJ318166 Bacteroidetes clone BIrii20 2.15.4.2.057 OTU 1 seq prokMSA_id:044421 AB064680 clone:NK202 2.15.4.2.058 OTU 1 seq prokMSA_id:044746 AJ290003 FukuN3 2.15.4.2.059 OTU 1 seq prokMSA_id:046428 AJ252666 Agricultural soil clone SC-I-91 2.15.4.2.060 OTU 1 seq prokMSA_id:047339 AF255635 clone Ebpr1 2.15.4.2.061 OTU 1 seq prokMSA_id:047356 AJ318177 clone BIsi8 2.15.4.2.062 OTU 1 seq prokMSA_id:047447 AJ252725 Potato plant root clone RC-III-62 2.15.4.2.063 OTU 1 seq prokMSA_id:047936 AF385548 Flavobacterium-like sp. oral clone AZ105 2.15.4.2.064 OTU 1 seq prokMSA_id:048537 AJ344195 isolate BUG-52 2.15.4.2.065 OTU 1 seq prokMSA_id:052540 AJ318106 clone BIai2 2.15.4.2.066 OTU 1 seq prokMSA_id:052651 AF316795 Crater Lake CL0-11 2.15.4.2.067 OTU 1 seq prokMSA_id:055504 AY124340 CS57 2.15.4.2.068 OTU 1 seq prokMSA_id:056602 AF507740 soil clone S172 2.15.4.2.069 OTU 2 seqs prokMSA_id:070346 AF361195 Cytophagales clone 09 prokMSA_id:060788 AF491662 CFB group clone SFD1-2 2.15.4.2.070 OTU 1 seq prokMSA_id:060794 AF491659 CFB group clone SFD1-16 2.15.4.2.071 OTU 1 seq prokMSA_id:060881 AY135893 clone SG2-1 2.15.4.2.072 OTU 1 seq prokMSA_id:061843 AF529321 Bacteroidetes clone CLi112 2.15.4.2.073 OTU 2 seqs prokMSA_id:062965 AF527580 clone LPB08 prokMSA_id:062952 AF527596 clone LPU29 2.15.4.2.074 OTU 1 seq prokMSA_id:062953 AF527600 clone LPU78 2.15.4.2.075 OTU 1 seq prokMSA_id:065534 AY095437 yard-trimming-compost clone S-76 2.15.4.2.076 OTU 1 seq prokMSA_id:065562 AY095400 yard-trimming-compost clone S-29 2.15.4.2.077 OTU 1 seq prokMSA_id:065659 AF507731 soil clone S155 2.15.4.2.078 OTU 1 seq prokMSA_id:065753 AF507630 soil clone C1150 2.15.4.2.079 OTU 1 seq prokMSA_id:065882 AF507443 soil clone C045 2.15.4.2.080 OTU 1 seq prokMSA_id:065901 AF507420 soil clone C055 2.15.4.2.081 OTU 1 seq prokMSA_id:065904 AF507418 soil clone C080 2.15.4.2.082 OTU 1 seq prokMSA_id:065906 AF507411 soil clone C0102 2.15.4.2.083 OTU 1 seq prokMSA_id:065926 AF507391 soil clone C0190 2.15.4.2.084 OTU 1 seq prokMSA_id:066507 AY100578 clone cvf61048 2.15.4.2.085 OTU 1 seq prokMSA_id:066509 AY100575 clone cvf116052 2.15.4.2.086 OTU 1 seq prokMSA_id:066517 AY100565 clone cvf70155 2.15.4.2.087 OTU 1 seq prokMSA_id:066530 AY100550 clone cvf113043 2.15.4.2.088 OTU 1 seq prokMSA_id:066537 AY100544 clone cvf74015 2.15.4.2.089 OTU 1 seq prokMSA_id:066540 AY100541 clone cvf61052 2.15.4.2.090 OTU 1 seq prokMSA_id:067237 AF495451 clone T10 2.15.4.2.091 OTU 1 seq prokMSA_id:070436 AF316118 Cilia-associated respiratory 96-1590 2.15.4.2.092 OTU 2 seqs prokMSA_id:071903 AF316115 Cilia-associated respiratory 243-54 prokMSA_id:071059 AF316116 Cilia-associated respiratory 246-57 2.15.4.2.093 OTU 1 seq prokMSA_id:071851 AF181568 Flexibacter cf. sancti 2.15.4.2.094 OTU 1 seq prokMSA_id:075153 AY159142 MF_clone_78 2.15.4.2.095 OTU 1 seq prokMSA_id:075395 AY159144 MF_clone_102 2.15.4.2.096 OTU 1 seq prokMSA_id:076084 AY154587 earthworm cast clone c230 2.15.4.2.097 OTU 1 seq prokMSA_id:076294 AY159145 MF_clone_105 2.15.4.2.098 OTU 1 seq prokMSA_id:076793 AY159143 MF_clone_79 2.15.4.2.099 OTU 1 seq prokMSA_id:076838 AF431572 CFB group clone C47.37PG 2.15.4.2.100 OTU 2 seqs prokMSA_id:078422 AY177767 Flavobacterium sp. isolate OF70 prokMSA_id:086582 AY214747 Bacteroidetes clone BB-1-F10 2.15.4.2.101 OTU 4 seqs prokMSA_id:079597 AY187881 clone CC4 prokMSA_id:079126 AY187882 clone CC14 prokMSA_id:079488 AY187885 clone Y10 prokMSA_id:079321 AY187919 clone X4 2.15.4.2.102 OTU 4 seqs prokMSA_id:079291 AY188323 clone KD6-86 prokMSA_id:081845 AY218618 clone KD3-81 prokMSA_id:082231 AY218681 clone KD8-115 prokMSA_id:081935 AY218708 clone KD7-36 2.15.4.2.103 OTU 1 seq prokMSA_id:080170 AY192292 Bacteroidetes clone W3-1E 2.15.4.2.104 OTU 1 seq prokMSA_id:080778 AY192290 Bacteroidetes clone W2b-1A 2.15.4.2.108 OTU 1 seq prokMSA_id:081126 AJ548891 clone BIOEST-2 2.15.4.2.109 OTU 3 seqs prokMSA_id:082223 AY211071 Bacteroidetes clone VC5 prokMSA_id:081141 AY218647 clone KD4-79 prokMSA_id:092847 AY352446 Bacteroidetes clone AVC1 2.15.4.2.110 OTU 2 seqs prokMSA_id:081734 AY218589 clone KD2-72 prokMSA_id:081165 AY218619 clone KD3-83 2.15.4.2.111 OTU 1 seq prokMSA_id:081227 AY218611 clone KD3-58 2.15.4.2.112 OTU 2 seqs prokMSA_id:081237 AY218669 clone KD9-53 prokMSA_id:081462 AY218692 clone KD8-75 2.15.4.2.113 OTU 1 seq prokMSA_id:081377 AY218612 clone KD3-6 2.15.4.2.114 OTU 1 seq prokMSA_id:081414 AY218602 clone KD3-117 2.15.4.2.115 OTU 1 seq prokMSA_id:081521 AY218630 clone KD4-25 2.15.4.2.116 OTU 1 seq prokMSA_id:081628 AY218616 clone KD3-77 2.15.4.2.117 OTU 1 seq prokMSA_id:081668 AY218629 clone KD4-19 2.15.4.2.118 OTU 1 seq prokMSA_id:081702 AY218650 clone KD9-100 2.15.4.2.119 OTU 1 seq prokMSA_id:081764 AY211072 Bacteroidetes clone VC10 2.15.4.2.122 OTU 1 seq prokMSA_id:081789 AY218746 clone KD6-102 2.15.4.2.123 OTU 1 seq prokMSA_id:081900 AY218743 clone KD5-90 2.15.4.2.124 OTU 1 seq prokMSA_id:081927 AY218762 clone KD6-48 2.15.4.2.125 OTU 1 seq prokMSA_id:081937 AY218691 clone KD8-73 2.15.4.2.126 OTU 1 seq prokMSA_id:081978 AY218676 clone KD8-1 2.15.4.2.127 OTU 1 seq prokMSA_id:082056 AY211076 clone VC38 2.15.4.2.128 OTU 1 seq prokMSA_id:082069 AY218564 clone KD1-64 2.15.4.2.129 OTU 1 seq prokMSA_id:082091 AY218583 clone KD2-41 2.15.4.2.131 OTU 14 seqs prokMSA_id:081785 AY218593 clone KD2-78 prokMSA_id:081081 AY218615 clone KD3-74 prokMSA_id:082204 AY218628 clone KD4-13 prokMSA_id:081417 AY218643 clone KD4-68 prokMSA_id:081804 AY218658 clone KD9-156 prokMSA_id:082316 AY218661 clone KD9-169 prokMSA_id:082169 AY218673 clone KD9-68 prokMSA_id:081076 AY218677 clone KD8-102 prokMSA_id:082277 AY218704 clone KD7-116 prokMSA_id:082129 AY218733 clone KD5-2 prokMSA_id:081875 AY218751 clone KD6-125 prokMSA_id:082360 AY218753 clone KD6-136 prokMSA_id:082060 AY218765 clone KD6-69 prokMSA_id:081847 AY218770 clone KD6-82 2.15.4.2.132 OTU 1 seq prokMSA_id:082403 AY218571 clone KD2-128 2.15.4.2.133 OTU 1 seq prokMSA_id:082455 AY218659 clone KD9-162 2.15.4.2.134 OTU 1 seq prokMSA_id:082498 AY274157 clone D4 2.15.4.2.135 OTU 1 seq prokMSA_id:082843 AY238335 Flexibacter sp. MDA2495 2.15.4.2.136 OTU 2 seqs prokMSA_id:083784 AY274135 clone D127 prokMSA_id:084974 AY274136 clone D130 2.15.4.2.137 OTU 2 seqs prokMSA_id:084483 AY274129 clone D119 prokMSA_id:084493 AY274138 clone D132 2.15.4.2.138 OTU 1 seq prokMSA_id:085194 AF534433 clone TLM09/TLMdgge12a 2.15.4.2.139 OTU 1 seq prokMSA_id:085906 AY274132 clone D124 2.15.4.2.140 OTU 1 seq prokMSA_id:086159 AY214846 Bacteroidetes clone BB-2-B9F 2.15.4.2.141 OTU 1 seq prokMSA_id:088232 AF491881 Flavobacteria symbiont 2 of Acromyrmex otcospinosus 2.15.4.2.142 OTU 1 seq prokMSA_id:088265 AF491882 Flavobacteria symbiont 3 of Acromyrmex otcospinosus 2.15.4.2.143 OTU 1 seq prokMSA_id:089282 AF491884 Flavobacteria symbiont 5 of Acromyrmex otcospinosus 2.15.4.2.144 OTU 1 seq prokMSA_id:089298 AF491880 Flavobacteria symbiont 1 of Acromyrmex otcospinosus 2.15.4.2.145 OTU 1 seq prokMSA_id:089475 AF491883 Flavobacteria symbiont 4 of Acromyrmex otcospinosus 2.15.4.2.146 OTU 1 seq prokMSA_id:091130 AY345537 clone LWSR-55 2.15.4.2.147 OTU 1 seq prokMSA_id:092077 AY352454 Bacteroidetes clone NEVC8 2.15.4.2.148 OTU 1 seq prokMSA_id:092505 AY359836 clone cEIII42 2.15.4.2.149 OTU 1 seq prokMSA_id:092973 AY359825 clone cEIII8 2.15.4.2.150 OTU 1 seq prokMSA_id:093072 AY359843 clone cEIII52 2.15.4.2.151 OTU 1 seq prokMSA_id:093279 AJ581624 CFB group clone KCM-C-67 2.15.4.2.152 OTU 1 seq prokMSA_id:093354 AJ581603 CFB group clone KCM-B-34 2.15.4.2.153 OTU 1 seq prokMSA_id:093798 AJ581604 CFB group clone KCM-B-27 2.15.4.2.154 OTU 1 seq prokMSA_id:094468 AJ583191 CFB group clone S15B-MN17 2.15.4.2.155 OTU 1 seq prokMSA_id:096992 AY375091 clone C33 2.15.4.2.156 OTU 2 seqs prokMSA_id:097049 AY375088 clone C15 prokMSA_id:098592 AY375092 clone C45 2.15.4.2.157 OTU 1 seq prokMSA_id:098865 AJ575722 Bacteroidetes clone SW36 2.15.4.2.999 poor quality 258 seqs prokMSA_id:041596 AB054973 Chitinophaga sp. 1105 prokMSA_id:024604 AB064682 clone:NK204 prokMSA_id:075576 AB075054 clone:KCS11 prokMSA_id:076957 AB075096 clone:KSS11 prokMSA_id:055481 AB087335 clone:F25 prokMSA_id:047683 AF010002 prokMSA_id:048819 AF010028 prokMSA_id:050637 AF010029 prokMSA_id:047771 AF010038 prokMSA_id:022090 AF010067 prokMSA_id:032782 AF010092 prokMSA_id:019389 AF010097 prokMSA_id:032077 AF058376 clone MT10 prokMSA_id:073429 AF059759 DgEPI6 prokMSA_id:028696 AF078319 Grassland soil clone sl1_005 prokMSA_id:042297 AF078340 Grassland soil clone sl1_201 prokMSA_id:045707 AF078349 Grassland soil clone sl1_212 prokMSA_id:040850 AF107515 SY2-85 prokMSA_id:017700 AF107517 SY3-10 prokMSA_id:042587 AF107525 SY4-2 prokMSA_id:073631 AF120277 Flavobacterium gastricum prokMSA_id:048869 AF126942 prokMSA_id:019505 AF126943 prokMSA_id:074470 AF128676 soil S0129 prokMSA_id:029961 AF128703 soil S0174 prokMSA_id:023091 AF128718 soil C029 prokMSA_id:024579 AF128721 soil C039 prokMSA_id:030858 AF141418 Cytophagales prokMSA_id:039015 AF141550 Cytophagales clone CRE-PA83 prokMSA_id:043641 AF226171 Maize root ZmrIs6 prokMSA_id:045277 AF226211 maize root Zmrc166 prokMSA_id:044517 AF234041 #1830-3P19 prokMSA_id:051383 AF234094 #0319-7G1 prokMSA_id:024368 AF234105 #0319-8B3 prokMSA_id:023254 AF234106 #0319-8B8 prokMSA_id:024109 AF234111 #0319-8J1 prokMSA_id:036783 AF250407 Cytophaga sp. D2 prokMSA_id:072232 AF283237 Uni-MO1 prokMSA_id:020837 AF289915 Cytophagales Kmlps6-21 prokMSA_id:036930 AF296201 SY6-50 prokMSA_id:050031 AF314454 PHOS-HC44 prokMSA_id:022824 AF314457 PHOS-HE99 prokMSA_id:071156 AF316117 Cilia-associated respiratory 95-15405 prokMSA_id:073210 AF316119 Cilia-associated respiratory 96-4763 prokMSA_id:046507 AF316796 Crater Lake CL0-55 prokMSA_id:071412 AF320946 Lake Michigan sediment LMBA29 prokMSA_id:019461 AF337819 copper smeltery D82 prokMSA_id:037176 AF337821 copper smeltery D84 prokMSA_id:016590 AF337823 copper smeltery D85 prokMSA_id:050070 AF337827 copper smeltery D59 prokMSA_id:024601 AF337837 copper smeltery D91 prokMSA_id:019123 AF337840 copper smeltery D70 prokMSA_id:049263 AF337842 copper smeltery D94 prokMSA_id:017722 AF337843 copper smeltery D71 prokMSA_id:025844 AF337845 copper smeltery D73 prokMSA_id:045229 AF337846 copper smeltery D96 prokMSA_id:037885 AF337847 copper smeltery D97 prokMSA_id:031547 AF361185 Cytophagales prokMSA_id:029588 AF388335 clone Ac25 prokMSA_id:020885 AF388337 clone Ac26 prokMSA_id:020988 AF390959 clone TFBMF3 prokMSA_id:051655 AF392705 clone CEA1 prokMSA_id:033354 AF406660 Potato endoplant A11 strain A11 prokMSA_id:046219 AF423274 soil clone 530-2 prokMSA_id:016506 AF428580 clone CRD99-02 prokMSA_id:047870 AF428675 clone CRP99-21 prokMSA_id:034058 AF428685 clone CRP99-31 prokMSA_id:049350 AF428712 clone CRP99-58 prokMSA_id:031532 AF428719 clone CRP99-65 prokMSA_id:023290 AF428723 clone CRP99-69 prokMSA_id:045841 AF428745 clone CR98-5-15 prokMSA_id:037180 AF428797 clone CR98-5-67 prokMSA_id:022755 AF428853 clone CR98-24-47 prokMSA_id:026818 AF428894 clone CR98-35-12 prokMSA_id:022402 AF428906 clone CR98-35-24 prokMSA_id:027033 AF429015 clone CR99-35-57 prokMSA_id:020779 AF429201 clone CR99-2-15 prokMSA_id:021231 AF429202 clone CR99-2-16 prokMSA_id:030159 AF429207 clone CR99-2-21 prokMSA_id:034167 AF429240 clone CR99-2-54 prokMSA_id:034761 AF429245 clone CR99-2-59 prokMSA_id:051898 AF429246 clone CR99-2-60 prokMSA_id:028146 AF429258 clone CR99-2-72 prokMSA_id:075276 AF431557 CFB group clone N12.23WL prokMSA_id:075492 AF431558 CFB group clone N12.58WL prokMSA_id:076884 AF431561 CFB group clone N27.112SM prokMSA_id:075910 AF431563 CFB group clone C32.40SM prokMSA_id:075027 AF431565 CFB group clone N41.111PG prokMSA_id:076844 AF431567 CFB group clone N41.135PG prokMSA_id:077151 AF431568 CFB group clone C47.03PG prokMSA_id:076255 AF431569 CFB group clone C47.19PG prokMSA_id:075355 AF431571 CFB group clone C47.34PG prokMSA_id:076324 AF431576 CFB group clone S52.23PG prokMSA_id:074917 AF431577 CFB group clone S52.28PG prokMSA_id:075688 AF431578 CFB group clone S52.32PG prokMSA_id:075927 AF431579 CFB group clone S52.55PG prokMSA_id:075851 AF432727 clone S22.13WL prokMSA_id:052035 AF440289 clone PO9 prokMSA_id:050053 AF446290 CFB group FL14C11 prokMSA_id:031657 AF446326 FL07H02 prokMSA_id:077518 AF477822 clone AGCO11 prokMSA_id:077515 AF477823 clone AGCO46 prokMSA_id:068715 AF484046 clone t42 prokMSA_id:068702 AF484061 clone p87 prokMSA_id:068697 AF484065 clone p19 prokMSA_id:055823 AF507415 soil clone C0203 prokMSA_id:065900 AF507419 soil clone C0218 prokMSA_id:065899 AF507422 soil clone C0219 prokMSA_id:065861 AF507462 soil clone S0107 prokMSA_id:065777 AF507597 soil clone C158 prokMSA_id:065758 AF507620 soil clone C126 prokMSA_id:065746 AF507634 soil clone C1180 prokMSA_id:074135 AF530989 Bacteroidetes wo31 prokMSA_id:076380 AF538336 isolate ENV-MO-004 prokMSA_id:074932 AF538339 isolate ENV-MO-007 prokMSA_id:058811 AF540038 Bacteroidetes DGGE gel band ESR BR 3 prokMSA_id:058810 AF540039 Bacteroidetes DGGE gel band ESR BR 4 prokMSA_id:059461 AF540795 clone DP11-8 prokMSA_id:078853 AF543360 clone A prokMSA_id:078752 AF547036 364 prokMSA_id:078654 AF547042 336 prokMSA_id:077014 AF550601 Cytophagales clone LiUU-1-3A prokMSA_id:076545 AF550603 Cytophagales clone LiUU-1-2A prokMSA_id:075262 AF550604 Cytophagales clone LiUU-1-2B prokMSA_id:076680 AF550605 Cytophagales clone LiUU-1-1A prokMSA_id:076788 AF550606 Cytophagales clone LiUU-1-1B prokMSA_id:070041 AH010347 Lake Michigan sediment LMBA29 and genes prokMSA_id:052216 AJ224415 Cytophaga sp. clone 54forward prokMSA_id:071410 AJ224417 Cytophaga sp. clone 88forward prokMSA_id:028681 AJ231047 clone 2 prokMSA_id:027148 AJ244325 Riz1026 prokMSA_id:032309 AJ252601 Rhizosphere soil isolate RSI-34 prokMSA_id:025129 AJ252675 Rhizosphere soil clone RSC-II-16 prokMSA_id:052737 AJ252738 Potato plant root clone RC-III-90 prokMSA_id:026670 AJ287663 CFB-group 338ev prokMSA_id:027715 AJ290006 FukuN50 prokMSA_id:072149 AJ290021 FukuS20 prokMSA_id:024628 AJ295477 rape rhizosphere wr0016 prokMSA_id:030393 AJ295487 rape rhizosphere wr0028 prokMSA_id:043500 AJ295489 rape rhizosphere wr0030 prokMSA_id:019090 AJ295495 rape rhizosphere wr0037 prokMSA_id:052522 AJ295496 rape rhizosphere wr0038 prokMSA_id:040971 AJ295501 rape rhizosphere wr0043 prokMSA_id:038632 AJ295513 rape rhizosphere wr0062 prokMSA_id:017251 AJ295514 rape rhizosphere wr0063 prokMSA_id:020761 AJ295515 rape rhizosphere wr0068 prokMSA_id:038071 AJ295518 rape rhizosphere wr0072 prokMSA_id:052134 AJ295519 rape rhizosphere wr0075 prokMSA_id:022592 AJ295522 rape rhizosphere wr0078 prokMSA_id:026812 AJ295523 rape rhizosphere wr0079 prokMSA_id:035098 AJ295527 rape rhizosphere wr0084 prokMSA_id:027752 AJ295532 rape rhizosphere wr0091 prokMSA_id:048435 AJ295534 rape rhizosphere wr0093 prokMSA_id:028298 AJ295540 rape rhizosphere wr0100 prokMSA_id:030785 AJ295544 rape rhizosphere wr0104 prokMSA_id:046406 AJ295547 rape rhizosphere wr0108 prokMSA_id:042302 AJ295548 rape rhizosphere wr0109 prokMSA_id:026159 AJ295549 rape rhizosphere wr0110 prokMSA_id:018676 AJ295551 rape rhizosphere wr0112 prokMSA_id:052310 AJ296583 DGGE band PSBAC-3 prokMSA_id:051431 AJ308282 clone F99_21 prokMSA_id:026717 AJ404571 US14 prokMSA_id:042550 AJ416670 CFB group clone env.S078 prokMSA_id:019907 AJ419647 clone R27 prokMSA_id:018252 AJ419648 clone R28 prokMSA_id:033099 AJ431307 CFB group clone 2_10 prokMSA_id:030928 AJ431315 CFB group clone 2_20 prokMSA_id:072019 AJ431318 CFB group clone 2_23 prokMSA_id:069353 AJ493675 CFB group clone 1 prokMSA_id:055915 AJ518625 clone Sai1P1-36 prokMSA_id:078875 AJ536440 isolate 7:5 569BP prokMSA_id:078646 AJ536441 isolate 7:5 576BP prokMSA_id:095290 AJ575729 Bacteroidetes clone NE61 prokMSA_id:088273 AJ577114 Flexibacter sp. clone 150 prokMSA_id:089637 AJ577115 Flexibacter sp. clone 173 prokMSA_id:088225 AJ577308 clone 88 prokMSA_id:095750 AJ583816 Bacteroidetes clone DGGE band 5 prokMSA_id:044595 AY006770 rumen prokMSA_id:024536 AY006927 rumen prokMSA_id:070888 AY034832 CA1 prokMSA_id:027680 AY037643 soil clone S138 prokMSA_id:021067 AY037664 earthworm cast clone C005 prokMSA_id:030799 AY037678 earthworm cast clone C021 prokMSA_id:073452 AY038772 CFB group clone TAF-B2 prokMSA_id:061305 AY043950 CFB group clone SMW4.2WL prokMSA_id:059127 AY121830 clone P-45 prokMSA_id:060884 AY135885 clone SG1-124 prokMSA_id:069103 AY145665 Bacteroidetes CD21F11 prokMSA_id:072515 AY145666 Bacteroidetes CD21F12 prokMSA_id:093950 AY145875 Flavobacterium sp. isolate DGGE band RWA41 prokMSA_id:072012 AY146657 Bacteroidetes K2 prokMSA_id:075128 AY159156 MF_isolate_13 prokMSA_id:075304 AY159169 MF_isolate_41 prokMSA_id:092986 AY184378 Bacteroidetes isolate DGGE gel band O1 prokMSA_id:092759 AY184379 Bacteroidetes isolate DGGE gel band O2 prokMSA_id:093159 AY184382 Bacteroidetes isolate DGGE gel band S1 prokMSA_id:080298 AY192289 Bacteroidetes clone W2a-3E prokMSA_id:079696 AY192294 Bacteroidetes clone W3-3B prokMSA_id:081106 AY193911 clone SA31 prokMSA_id:083158 AY214611 Bacteroidetes clone SL2-1-G2 prokMSA_id:083384 AY214762 Bacteroidetes clone BB-1-E4 prokMSA_id:086091 AY214763 Bacteroidetes clone BB-1-E2 prokMSA_id:082840 AY214765 Bacteroidetes clone BB-1-D10 prokMSA_id:083968 AY214775 Bacteroidetes clone BB-1-C6 prokMSA_id:085722 AY214792 Bacteroidetes clone BB-1-A5 prokMSA_id:085400 AY214799 Bacteroidetes clone BB-2-G11 prokMSA_id:083972 AY214806 Bacteroidetes clone BB-2-G8R prokMSA_id:083929 AY214815 Bacteroidetes clone BB-2-E6R prokMSA_id:083699 AY214823 Bacteroidetes clone BB-2-H9F prokMSA_id:083536 AY214828 Bacteroidetes clone BB-2-G6F prokMSA_id:086345 AY214831 Bacteroidetes clone BB-2-D10F prokMSA_id:085570 AY217509 clone WCB40 prokMSA_id:085350 AY253429 clone AC4 prokMSA_id:083957 AY253435 clone HC2 prokMSA_id:090706 AY304021 soil clone Dpcom60 prokMSA_id:091963 AY337035 Cytophagales clone SL-1a prokMSA_id:091751 AY337036 Cytophagales clone SL-1b prokMSA_id:093881 AY357952 cEV7 prokMSA_id:093418 AY357963 cEV20 prokMSA_id:093392 AY357967 cEV25 prokMSA_id:094141 AY357971 cEV30 prokMSA_id:093944 AY357972 cEV31 prokMSA_id:094080 AY357976 cEV36 prokMSA_id:094115 AY357978 cEV39 prokMSA_id:094035 AY357986 cEV47 prokMSA_id:093557 AY357989 cEV51 prokMSA_id:094283 AY357991 cEV53 prokMSA_id:093689 AY364063 clone cRI21d prokMSA_id:093564 AY364069 clone cRI32d prokMSA_id:094709 AY369158 clone T-OTU2 prokMSA_id:097615 AY395158 clone F02ST prokMSA_id:096889 AY395176 clone H01K prokMSA_id:096728 AY395182 clone H29K prokMSA_id:097476 AY395184 clone I10K prokMSA_id:098658 AY395186 clone I14K prokMSA_id:098459 AY395195 clone K16K prokMSA_id:002518 D12657 Cytophaga arvensicola IAM 12650 . prokMSA_id:002517 D26191 soil from paddy field clone PAD4. prokMSA_id:002516 D26197 soil from paddy field clone PAD10. prokMSA_id:002510 D26220 soil from paddy field clone PAD33. prokMSA_id:002527 D28796 str. MF158. prokMSA_id:002528 D28798 str. ML466. prokMSA_id:002525 M62795 Flexibacter sancti ATCC 23092 . prokMSA_id:045896 U35507 172r6 from Wisconsin agricultural soil prokMSA_id:002520 U68609 clone M22. prokMSA_id:002524 U68627 clone M47. prokMSA_id:002513 U68657 clone P25. prokMSA_id:002514 U68675 clone P48. prokMSA_id:002515 U68682 clone P61. prokMSA_id:069847 U85098 cytophagales clone ACK-M42 prokMSA_id:040182 U85100 cytophagales clone ACK-C70 prokMSA_id:072197 U85103 cytophagales clone ACK-C25 prokMSA_id:019203 U85109 cytophagales clone ACK-DE64 prokMSA_id:017983 U85111 cytophagales clone ACK-M32 prokMSA_id:002529 X84582 str. SBR2044. prokMSA_id:002511 X84595 str. SBR2061. prokMSA_id:002526 Y11625 clone 54. prokMSA_id:032040 Z82972 sp. clone group T15C 2.15.4.3 LEW.NIGRICANS_SUBGROUP 154 seqs 2.15.4.3.001 OTU 1 seq prokMSA_id:002563 AF087054 clone BS2. 2.15.4.3.002 OTU 10 seqs prokMSA_id:002532 AF087057 Candidatus Magnospira bakii. prokMSA_id:002562 AF087058 Candidatus Magnospira bakii. prokMSA_id:002561 AF087059 Candidatus Magnospira bakii. prokMSA_id:023993 AF087060 Candidatus Magnospira bakii clone BM6 prokMSA_id:002560 AF087091 Candidatus Magnospira bakii. prokMSA_id:050421 AF087092 Candidatus Magnospira bakii clone BM18 prokMSA_id:048025 AF087093 Candidatus Magnospira bakii clone BM11 prokMSA_id:021458 AF087095 Candidatus Magnospira bakii clone BM09 prokMSA_id:002531 AF087096 Candidatus Magnospira bakii. prokMSA_id:002559 AF087097 Candidatus Magnospira bakii. 2.15.4.3.003 OTU 1 seq prokMSA_id:002558 AF170779 clone QSSC9L-1. 2.15.4.3.004 OTU 1 seq prokMSA_id:002557 AF142842 clone BURTON-23. 2.15.4.3.005 OTU 1 seq prokMSA_id:002556 AF142869 clone BURTON-51. 2.15.4.3.006 OTU 1 seq prokMSA_id:002555 L10944 marine snow associated clone agg32. 2.15.4.3.007 OTU 1 seq prokMSA_id:002554 AJ007870 clone LD1. 2.15.4.3.008 OTU 1 seq prokMSA_id:002551 AF039295 Lewinella persica str. T-3 ATCC 23167 . 2.15.4.3.009 OTU 1 seq prokMSA_id:002550 AF039292 Lewinella cohaerens str. II-2 ATCC 23123 . 2.15.4.3.010 OTU 1 seq prokMSA_id:002548 AF142895 clone EKHO-12. 2.15.4.3.011 OTU 1 seq prokMSA_id:002549 AF170780 clone QSSC9L-2. 2.15.4.3.012 OTU 1 seq prokMSA_id:002546 AF039294 Lewinella nigricans str. SS-2 ATCC 23147 . 2.15.4.3.013 OTU 3 seqs prokMSA_id:002541 AJ007871 clone LD2. prokMSA_id:002542 AJ007874 clone LD30. prokMSA_id:061777 AJ416157 clone Med0-02 2.15.4.3.014 OTU 1 seq prokMSA_id:002540 AB015265 Cytophaga sp. str. JTB251. 2.15.4.3.016 OTU 1 seq prokMSA_id:002538 AF087071 clone MK04. 2.15.4.3.017 OTU 1 seq prokMSA_id:002536 AF087079 clone MK07. 2.15.4.3.019 OTU 5 seqs prokMSA_id:051164 AF087064 MK03 prokMSA_id:002539 AF087067 clone MK11. prokMSA_id:044703 AF087073 MK19 prokMSA_id:002535 AF087081 clone MK24. prokMSA_id:002534 AF087087 clone MK09. 2.15.4.3.020 OTU 1 seq prokMSA_id:019837 AJ318142 Bacteroidetes clone BIhii16 2.15.4.3.021 OTU 1 seq prokMSA_id:021302 AB058900 Saprospira sp. SS91-40 2.15.4.3.022 OTU 2 seqs prokMSA_id:059358 AF502207 clone HP1A82 prokMSA_id:059357 AF502208 clone HP1A94 2.15.4.3.023 OTU 1 seq prokMSA_id:024095 AF195428 CFB group kpj59rc 2.15.4.3.024 OTU 1 seq prokMSA_id:070292 AY038774 CFB group clone TAF-B80 2.15.4.3.025 OTU 1 seq prokMSA_id:026495 AF379685 clone SL8 2.15.4.3.026 OTU 1 seq prokMSA_id:027029 AF314423 PHOS-HE45 2.15.4.3.027 OTU 1 seq prokMSA_id:027657 AF445648 CFB group clone SM1A07 2.15.4.3.028 OTU 2 seqs prokMSA_id:028705 AF316766 Crater Lake CL120-56 prokMSA_id:036013 AF316767 Crater Lake CL500-3 2.15.4.3.029 OTU 1 seq prokMSA_id:028861 AF087061 MK10 2.15.4.3.030 OTU 1 seq prokMSA_id:029118 AF277544 Lewinella ARCTIC.161 2.15.4.3.031 OTU 1 seq prokMSA_id:029244 AB058902 Saprospira sp. SS95-4 2.15.4.3.032 OTU 2 seqs prokMSA_id:033230 AF445681 CFB group clone SM1E03 prokMSA_id:029419 AF445721 CFB group clone SM2D04 2.15.4.3.033 OTU 1 seq prokMSA_id:030366 AB058901 Saprospira sp. SS92-11 2.15.4.3.034 OTU 1 seq prokMSA_id:055963 AY102897 clone BCM3P-31B 2.15.4.3.035 OTU 1 seq prokMSA_id:033318 AF277472 Lewinella SIC.165 2.15.4.3.036 OTU 1 seq prokMSA_id:034106 AF314434 PHOS-HE79 2.15.4.3.037 OTU 4 seqs prokMSA_id:047462 AF445647 CFB group clone SM1A06 prokMSA_id:041088 AF445660 CFB group clone SM1C03 prokMSA_id:036772 AF445664 CFB group clone SM1C07 prokMSA_id:035371 AF445729 CFB group clone SM2F07 2.15.4.3.038 OTU 1 seq prokMSA_id:035418 AB058899 Saprospira sp. SS90-1 2.15.4.3.039 OTU 1 seq prokMSA_id:035871 AF314431 PHOS-HE35 2.15.4.3.040 OTU 2 seqs prokMSA_id:041847 AF255639 clone Ebpr17 prokMSA_id:039161 AF255645 clone Ebpr18 2.15.4.3.041 OTU 1 seq prokMSA_id:041375 AF087075 MK22 2.15.4.3.042 OTU 1 seq prokMSA_id:042683 AF142893 EKHO-10 2.15.4.3.043 OTU 1 seq prokMSA_id:044087 AF142785 ACE-3 2.15.4.3.044 OTU 1 seq prokMSA_id:044289 AY062176 Marine MSC1 2.15.4.3.045 OTU 1 seq prokMSA_id:044823 AF469382 clone CTD37B 2.15.4.3.046 OTU 1 seq prokMSA_id:073931 AJ290034 GKS2-217 2.15.4.3.047 OTU 1 seq prokMSA_id:046600 AF211288 Cytophagales MT60 2.15.4.3.048 OTU 1 seq prokMSA_id:050627 AF087046 BA7 2.15.4.3.049 OTU 1 seq prokMSA_id:069273 AF495388 clone F10.18 2.15.4.3.050 OTU 1 seq prokMSA_id:052545 AJ318154 Bacteroidetes clone BIjiii32 2.15.4.3.051 OTU 2 seqs prokMSA_id:063862 AF452599 CFB group clone ML1218M-14 prokMSA_id:062688 AF507865 Bacteroidetes clone ML623J-30 2.15.4.3.052 OTU 1 seq prokMSA_id:063062 AB088636 Saprospira grandis 2.15.4.3.053 OTU 1 seq prokMSA_id:064412 AY102912 clone BCM3S-7B 2.15.4.3.054 OTU 1 seq prokMSA_id:064422 AY102901 clone BCM3P-6B 2.15.4.3.055 OTU 1 seq prokMSA_id:064428 AY102894 clone BCM3P-25B 2.15.4.3.056 OTU 1 seq prokMSA_id:064431 AY102891 clone BCM3P-28B 2.15.4.3.057 OTU 1 seq prokMSA_id:064436 AY102889 clone BCM1-7B 2.15.4.3.058 OTU 1 seq prokMSA_id:066113 AB074939 CFB group clone:KB35 2.15.4.3.059 OTU 1 seq prokMSA_id:067269 AF495420 clone F13.14 2.15.4.3.060 OTU 1 seq prokMSA_id:070825 AB088635 Saprospira sp. SS98-5 2.15.4.3.061 OTU 1 seq prokMSA_id:072740 AF328206 clone KS69 2.15.4.3.062 OTU 1 seq prokMSA_id:076801 AY168729 clone HC-49P 2.15.4.3.063 OTU 1 seq prokMSA_id:078013 AY171323 clone s39 2.15.4.3.064 OTU 1 seq prokMSA_id:078101 AY171331 clone s22 2.15.4.3.065 OTU 1 seq prokMSA_id:079482 AY187353 clone csbio160175 2.15.4.3.066 OTU 1 seq prokMSA_id:080004 AY192291 Bacteroidetes clone W2b-7E 2.15.4.3.067 OTU 1 seq prokMSA_id:082646 AY226201 Planctomycetales clone ABBB-28 2.15.4.3.068 OTU 1 seq prokMSA_id:086485 AY226276 clone DBBB-102 2.15.4.3.069 OTU 1 seq prokMSA_id:090502 AY327875 clone SF_C4-E6 2.15.4.3.070 OTU 1 seq prokMSA_id:092611 AY354794 Bacteroidetes clone PLY-P2-74 2.15.4.3.071 OTU 1 seq prokMSA_id:093074 AY354167 clone pIR3BG01 2.15.4.3.072 OTU 1 seq prokMSA_id:095603 AY225658 Bacteroidetes clone AT-s92 2.15.4.3.999 poor quality 61 seqs prokMSA_id:031867 AB010624 clone ASB001 prokMSA_id:028020 AF010027 prokMSA_id:052004 AF087065 MK05 prokMSA_id:021304 AF087070 MK16 prokMSA_id:002537 AF087074 clone MK21. prokMSA_id:023137 AF087082 MK15 prokMSA_id:044936 AF087090 Candidatus Magnospira bakii clone BM13 prokMSA_id:052400 AF087094 Candidatus Magnospira bakii clone BM12 prokMSA_id:034340 AF245038 Cytophaga 65D11 prokMSA_id:041472 AF314455 PHOS-HC26 prokMSA_id:045902 AF314460 PHOS-HE67 prokMSA_id:068255 AF365463 clone BM89MF1BD10 prokMSA_id:068201 AF365525 clone BM89MF5BG1 prokMSA_id:068160 AF365572 clone BT49MF4BE8 prokMSA_id:068143 AF365592 clone BT60MF2BB8 prokMSA_id:067996 AF365765 clone BT60DS4BG4 prokMSA_id:067993 AF365771 clone BT60DS4BH4 prokMSA_id:067931 AF365843 clone BT60PA10BE5 prokMSA_id:067761 AF423362 CFB group isolate DGGE band L4 prokMSA_id:067752 AF423370 CFB group isolate DGGE band GC3 prokMSA_id:049325 AF428658 clone CRP99-04 prokMSA_id:022670 AF428754 clone CR98-5-24 prokMSA_id:049324 AF428783 clone CR98-5-53 prokMSA_id:028909 AF428893 clone CR98-35-11 prokMSA_id:023389 AF428943 clone CR98-35-61 prokMSA_id:024177 AF429119 clone CR99-24-09 prokMSA_id:076915 AF432756 clone S37.04SM prokMSA_id:075644 AF432780 clone S52.38PG prokMSA_id:019148 AF446283 CFB group FL04E03 prokMSA_id:048789 AF446287 CFB group FL13A07 prokMSA_id:074585 AF466923 CFB group isolate DGGE band C44 prokMSA_id:017548 AF469380 clone 33-PA75B00 prokMSA_id:065610 AF507788 soil clone S1221 prokMSA_id:069197 AF530981 Bacteroidetes so46 prokMSA_id:073519 AJ298382 marine AY-38 prokMSA_id:071535 AJ416169 clone Urk0-01 prokMSA_id:061684 AJ416270 clone Sta5-33 prokMSA_id:049156 AY038553 Cytophagales clone CD4C10 prokMSA_id:060904 AY135863 clone SG1-10 prokMSA_id:073540 AY145578 CFB group clone DC5-0-5 prokMSA_id:083045 AY214794 Bacteroidetes clone BB-2-H7 prokMSA_id:086154 AY214850 Bacteroidetes clone BB-2-E2F prokMSA_id:085749 AY226315 clone DBBB-87 prokMSA_id:083577 AY226321 planctomycete clone DBBB-94 prokMSA_id:085778 AY263724 Bacteroidetes clone FBR10 prokMSA_id:087937 AY274243 Bacteroidetes isolate DGGE band GWS-AG-9 prokMSA_id:087377 AY293499 Bacteroidetes clone FL08B07 prokMSA_id:091460 AY344439 clone K60-11 prokMSA_id:092199 AY353561 Rhodobacteraceae isolate DGGE gel band AB-9 prokMSA_id:002553 L10945 marine snow associated clone agg41. prokMSA_id:002533 M58790 Haliscomenobacter hydrossis prokMSA_id:002530 M58795 Saprospira grandis prokMSA_id:002543 X78642 clone SMK206. prokMSA_id:002545 X84463 str. SBT1019. prokMSA_id:002544 X84513 str. SBR1082. prokMSA_id:002552 X89312 clone 3311. prokMSA_id:002564 X89319 clone 4611. prokMSA_id:002566 X89335 clone 7011. prokMSA_id:002565 X89345 clone 8911. prokMSA_id:042104 Z77570 1-140 C40 prokMSA_id:002547 Z77601 str. 2-100 C1.18. 2.15.5 PERSICOBACTER_GROUP 93 seqs 2.15.5.001 OTU 1 seq prokMSA_id:002577 AB015263 Cytophaga sp. str. JTB248. 2.15.5.002 OTU 1 seq prokMSA_id:002576 AB015585 Cytophaga sp. str. BD7-10. 2.15.5.003 OTU 1 seq prokMSA_id:002575 Y18838 Taxeobacter ocellatus str. Txo1. 2.15.5.004 OTU 1 seq prokMSA_id:002574 Y18835 Taxeobacter ocellatus str. Myx2105. 2.15.5.005 OTU 5 seqs prokMSA_id:058649 AB078037 Flexibacter aggregans strain:IFO 15973 prokMSA_id:055666 AB078040 Flexibacter aggregans strain:IFO 15976 prokMSA_id:058644 AB078041 Flexibacter aggregans strain:IFO 15990 prokMSA_id:058611 AB078077 Flexithrix dorotheae strain:IFO 15987 prokMSA_id:002569 AF039296 Flexithrix dorotheae ATCC 23163 . 2.15.5.006 OTU 3 seqs prokMSA_id:051845 AF195429 CFB group kpc26 prokMSA_id:021094 AF195430 CFB group kpc29 prokMSA_id:026407 AF195432 CFB group kpc116rc 2.15.5.007 OTU 1 seq prokMSA_id:023202 AF188171 KEppib30 2.15.5.008 OTU 1 seq prokMSA_id:058610 AB078078 Microscilla arenaria strain:IFO 15982 2.15.5.009 OTU 1 seq prokMSA_id:035606 AF195433 CFB group kpa13rc 2.15.5.010 OTU 1 seq prokMSA_id:039930 AF195434 CFB group kpj56rc 2.15.5.011 OTU 2 seqs prokMSA_id:041046 AF403188 clone cvf122197 prokMSA_id:066546 AY100534 clone cvf74010 2.15.5.012 OTU 1 seq prokMSA_id:044553 AF403186 clone cvf122070 2.15.5.013 OTU 7 seqs prokMSA_id:080757 AF449772 CFB group clone ML310M-18 prokMSA_id:080578 AF449773 CFB group clone ML310M-34 prokMSA_id:080875 AF449774 CFB group clone ML310M-40 prokMSA_id:080577 AF449778 CFB group clone ML513M-12 prokMSA_id:080853 AF449783 CFB group clone ML615J-16 prokMSA_id:079775 AF449785 CFB group clone ML615J-4 prokMSA_id:062687 AF507873 Bacteroidetes clone ML623J-29 2.15.5.014 OTU 1 seq prokMSA_id:065682 AF507701 soil clone C0108 2.15.5.015 OTU 4 seqs prokMSA_id:066031 AB073593 Cytophaga sp. I-482 prokMSA_id:066030 AB073594 Cytophaga sp. I-976 prokMSA_id:066029 AB073595 Cytophaga sp. I-1787 prokMSA_id:070072 AB073596 Cytophaga sp. I-1789 2.15.5.016 OTU 1 seq prokMSA_id:066536 AY100545 clone cvf63005 2.15.5.017 OTU 1 seq prokMSA_id:066996 AB058919 Reichenbachia agaroperforata 2.15.5.018 OTU 1 seq prokMSA_id:067393 AJ456975 Cytophaga sp. GPl-11 isolate GPl-11 2.15.5.019 OTU 1 seq prokMSA_id:082467 AJ548897 clone BIOEST-8 2.15.5.020 OTU 1 seq prokMSA_id:083725 AY250875 Cytophagales clone FBP292 2.15.5.021 OTU 1 seq prokMSA_id:085893 AY241563 Marine HP28 2.15.5.022 OTU 1 seq prokMSA_id:090516 AJ577113 Flexibacter sp. clone 132 2.15.5.999 poor quality 55 seqs prokMSA_id:021689 AB057642 prokMSA_id:024016 AF010007 prokMSA_id:077376 AF188872 M32 prokMSA_id:077524 AF188875 17B8 prokMSA_id:040118 AF223256 CFB group B2M39 prokMSA_id:039623 AF234100 #0319-7K9 prokMSA_id:025373 AF268289 Cytophagales ESR 5 prokMSA_id:041323 AF357990 clone LO12.1 prokMSA_id:055443 AF365458 clone BM89MF1BC5 prokMSA_id:068119 AF365616 clone BT60MF7BE4 prokMSA_id:068039 AF365711 clone BT60DS1BF7 prokMSA_id:068009 AF365743 clone BT60DS4BD2 prokMSA_id:067992 AF365769 clone BT60DS4BH12 prokMSA_id:067970 AF365795 clone BM89PA1BbG2 prokMSA_id:067923 AF365848 clone BT60PA10BF10 prokMSA_id:023577 AF392706 clone LAB6 prokMSA_id:019438 AF403189 clone cvf122238 prokMSA_id:067758 AF423365 CFB group isolate DGGE band L1 prokMSA_id:067753 AF423372 CFB group isolate DGGE band GC1 prokMSA_id:047883 AF440283 clone PO3 prokMSA_id:029286 AF442053 CFB group clone CD1401A10 prokMSA_id:080810 AF449775 CFB group clone ML310M-48 prokMSA_id:081011 AF449777 CFB group clone ML512M-6 prokMSA_id:080612 AF449786 CFB group clone ML615J-9 prokMSA_id:074051 AF466886 CFB group isolate DGGE band C27 prokMSA_id:065724 AF507657 soil clone C159 prokMSA_id:071780 AJ276901 Hymenobacter aerophilus strain I/26Cor1 prokMSA_id:047982 AJ308281 clone F99_20S clone F99_19 prokMSA_id:059230 AJ319853 SB-68-Cd prokMSA_id:040555 AJ431276 CFB group clone 1_1 prokMSA_id:038798 AJ431282 CFB group clone 1_32 prokMSA_id:051763 AJ431317 CFB group clone 2_22 prokMSA_id:039864 AJ437412 clone 1_34_105 prokMSA_id:028487 AJ437422 clone 1_34_210 prokMSA_id:050074 AJ437426 clone 1_34_304 prokMSA_id:051162 AJ437444 clone 1_34_112 prokMSA_id:040680 AJ437445 clone 1_34_311 prokMSA_id:047682 AJ437447 clone 1_32_108 prokMSA_id:044119 AJ437454 clone 1_32_313 prokMSA_id:022326 AJ437455 clone 1_32_316 prokMSA_id:038460 AJ437462 clone 1_32_405 prokMSA_id:093377 AJ582572 clone G5 prokMSA_id:045949 AY037706 earthworm cast clone C056 prokMSA_id:074164 AY145620 CFB group clone DC11-51-8 prokMSA_id:080565 AY192293 Bacteroidetes clone W3-2E prokMSA_id:080729 AY193240 Bacteroidetes clone Bol22 prokMSA_id:094274 AY277265 Marine H3 prokMSA_id:087743 AY283096 Bacteroidetes clone NS-22 prokMSA_id:002567 D12655 Flammeovirga aprica ATCC 23126 . prokMSA_id:002572 D12660 Persicobacter diffluens str. B1 NCIMB 1402 . prokMSA_id:002573 M58765 Persicobacter diffluens str. Lewin LIM-1 ATCC 23140. prokMSA_id:002568 M60455 Microscilla arenaria str. HJ-1 ATCC 23161 . prokMSA_id:002571 M64628 Flexibacter aggregans str. Lewin NN-3 ATCC 23162 . prokMSA_id:072519 U85107 cytophagales clone ACK-W12 prokMSA_id:002570 Z77524 unnamed organism. 2.15.6 CY.AURANTIACA_GROUP 553 seqs 2.15.6.001 OTU 1 seq prokMSA_id:002621 D84607 unnamed organism. 2.15.6.002 OTU 1 seq prokMSA_id:002619 X90706 IFAM 3359. 2.15.6.003 OTU 3 seqs prokMSA_id:002615 X90701 IFAM 3211. prokMSA_id:002614 X90704 IFAM 2074. prokMSA_id:002618 X90705 IFAM 3359. 2.15.6.004 OTU 2 seqs prokMSA_id:002613 X90700 IFAM 1493. prokMSA_id:002617 X90702 IFAM 3359. 2.15.6.005 OTU 1 seq prokMSA_id:002612 AF146228 clone CLEAR-1. 2.15.6.006 OTU 1 seq prokMSA_id:002611 U85891 str. IC025. 2.15.6.007 OTU 1 seq prokMSA_id:002608 AF013535 unnamed organism. 2.15.6.008 OTU 1 seq prokMSA_id:002605 Y18837 Taxeobacter Txc1 str. Txc1. 2.15.6.009 OTU 1 seq prokMSA_id:002604 Y18836 Taxeobacter gelupurpurascens str. Txg1. 2.15.6.010 OTU 2 seqs prokMSA_id:002602 Y18833 Hymenobacter roseosalivarius str. AA718. prokMSA_id:002603 Y18834 Hymenobacter roseosalivarius str. AA688. 2.15.6.011 OTU 1 seq prokMSA_id:002601 AF142843 clone BURTON-24. 2.15.6.012 OTU 1 seq prokMSA_id:002596 AF137381 Runella NS12 str. NS12. 2.15.6.013 OTU 1 seq prokMSA_id:002595 AF137029 str. NS114. 2.15.6.014 OTU 1 seq prokMSA_id:002593 U13160 clone PLY51. 2.15.6.015 OTU 2 seqs prokMSA_id:002592 AJ011917 Flectobacillus sp. str. MWH38. prokMSA_id:089114 AY308840 Flectobacillus sp. 'starch-degrading 2' 2.15.6.016 OTU 1 seq prokMSA_id:002588 AB015528 Cytophaga sp. str. BD1-27. 2.15.6.017 OTU 1 seq prokMSA_id:002587 AF170778 clone QSSC8L-18. 2.15.6.018 OTU 1 seq prokMSA_id:002586 AF170733 str. QSSC1-11. 2.15.6.020 OTU 1 seq prokMSA_id:016812 AF348718 Cytophaga sp. clone MPD-38 2.15.6.021 OTU 3 seqs prokMSA_id:049794 AF424358 CFB group MERTZ_0CM_348 prokMSA_id:017209 AF424364 CFB group MERTZ_21CM_51 prokMSA_id:059814 AY133377 clone OB3_175 2.15.6.022 OTU 1 seq prokMSA_id:017232 AY037736 earthworm cast clone C133 2.15.6.023 OTU 1 seq prokMSA_id:017324 AY037743 earthworm cast clone C141 2.15.6.024 OTU 1 seq prokMSA_id:017343 AF408271 CFB/Green sulfur group clone KL-11-1-13 2.15.6.025 OTU 40 seqs prokMSA_id:068937 AF408280 Hymenobacter group clone KL-11-1-14 prokMSA_id:017682 AF408281 Hymenobacter group clone KL-11-1-4 prokMSA_id:042815 AF408282 Hymenobacter group clone KL-111-2-9 prokMSA_id:028499 AF408283 Hymenobacter group clone KL-114-2-5 prokMSA_id:040455 AF408284 Hymenobacter group clone KL-125-4-11 prokMSA_id:018440 AF408285 Hymenobacter group clone KL-13-4-2 prokMSA_id:036763 AF408286 Hymenobacter group clone KL-2-5-1 prokMSA_id:039725 AF408287 Hymenobacter group clone KL-27-1-12 prokMSA_id:024199 AF408288 Hymenobacter group clone KL-27-1-4 prokMSA_id:029557 AF408289 Hymenobacter group clone KL-27-1-8 prokMSA_id:052329 AF408290 Hymenobacter group clone KL-27-1-9 prokMSA_id:042218 AF408291 Hymenobacter group clone KL-36-1-7 prokMSA_id:029868 AF408292 Hymenobacter group clone KL-48-1-3 prokMSA_id:023697 AF408293 Hymenobacter group clone KL-48-1-8 prokMSA_id:042810 AF408294 Hymenobacter group clone KL-53-2-5 prokMSA_id:041203 AF408295 Hymenobacter group clone KL-59-7-8 prokMSA_id:052380 AF408296 Hymenobacter group clone KL-59-7-9 prokMSA_id:039156 AF408297 Hymenobacter group clone KL-59-7-4 prokMSA_id:050263 AF408298 Hymenobacter group clone KL-93-1-12 prokMSA_id:047580 AF408299 Hymenobacter group clone KL-94-1-6 prokMSA_id:022065 AF408301 Hymenobacter group clone KL-94-2-7 prokMSA_id:039913 AF408302 Hymenobacter group clone KL-94-2-4 prokMSA_id:039638 AF408303 Hymenobacter group clone KL-94-2-11 prokMSA_id:039988 AF408304 Hymenobacter group clone KL-94-1-4 prokMSA_id:049913 AF408305 Hymenobacter group clone KL-94-1-3 prokMSA_id:021658 AF408307 Hymenobacter group clone KL-93-1-11 prokMSA_id:024449 AF408309 Hymenobacter group clone KL-37-1-8 prokMSA_id:029431 AF408310 Hymenobacter group clone KL-26-2-7 prokMSA_id:045352 AF408311 Hymenobacter group clone KL-26-2-4 prokMSA_id:037382 AF408312 Hymenobacter group clone KL-26-2-3 prokMSA_id:038961 AF408313 Hymenobacter group clone KL-26-2-15 prokMSA_id:037430 AF408314 Hymenobacter group clone KL-26-2-14 prokMSA_id:024408 AF408315 Hymenobacter group clone KL-125-4-4 prokMSA_id:071125 AF408316 Hymenobacter group clone KL-125-4-2 prokMSA_id:018171 AF408317 Hymenobacter group clone KL-114-2-8 prokMSA_id:019707 AF408318 Hymenobacter group clone KL-114-2-3 prokMSA_id:026934 AF408319 Hymenobacter group clone KL-114-2-2 prokMSA_id:018647 AF408320 Hymenobacter group clone KL-114-2-1 prokMSA_id:018835 AF408321 Hymenobacter group clone KL-111-2-4 prokMSA_id:027258 AF408322 Hymenobacter group clone KL-111-2-2 2.15.6.026 OTU 1 seq prokMSA_id:018147 AF424366 CFB group MERTZ_21CM_141 2.15.6.027 OTU 1 seq prokMSA_id:018161 AF424338 CFB group MERTZ_2CM_107 2.15.6.029 OTU 1 seq prokMSA_id:018766 AF170787 Flexibacter sp. QSSC9L-9 2.15.6.030 OTU 3 seqs prokMSA_id:018798 AF289149 Cytophagales clone PRD01a001B prokMSA_id:028897 AF361200 Cytophagales clone 30 prokMSA_id:095713 AJ575728 Bacteroidetes clone NE60 2.15.6.031 OTU 1 seq prokMSA_id:019038 AF408273 Hymenobacter group clone KL-2-5-13 2.15.6.032 OTU 1 seq prokMSA_id:019106 AB015937 Microscilla sp. Nano 1 complete 2.15.6.033 OTU 1 seq prokMSA_id:019323 AF245645 CFB groupbacterium NAC60-3 2.15.6.034 OTU 1 seq prokMSA_id:019520 AY038788 CFB group clone TAF-A4 2.15.6.035 OTU 2 seqs prokMSA_id:019929 AF188174 KEppib23 prokMSA_id:082949 AY264840 Flexibacteraceae IMSNU 14014 2.15.6.036 OTU 1 seq prokMSA_id:020151 AJ290033 GKS2-216 2.15.6.037 OTU 2 seqs prokMSA_id:042223 AF408274 Hymenobacter sp. clone KL-2-4-2 prokMSA_id:020292 AF408275 Hymenobacter sp. clone KL-2-4-9 2.15.6.038 OTU 1 seq prokMSA_id:020428 AJ318145 clone BIhii45 2.15.6.039 OTU 1 seq prokMSA_id:020675 AY038795 CFB group clone TAF-A237 2.15.6.040 OTU 1 seq prokMSA_id:071338 AY038784 CFB group clone TAF-A119 2.15.6.041 OTU 1 seq prokMSA_id:059352 AF502211 clone HP1A92 2.15.6.043 OTU 1 seq prokMSA_id:023225 AF449431 Hymenobacter sp. MJ1 2.15.6.044 OTU 3 seqs prokMSA_id:046108 AF408278 Taxeobacter sp. clone KL-2-4-3 prokMSA_id:036577 AF408279 Taxeobacter sp. clone KL-59-7-7 prokMSA_id:023691 AF408306 Hymenobacter group clone KL-94-1-15 2.15.6.046 OTU 1 seq prokMSA_id:024593 AJ431335 CFB group ikaite c9 isolate ikaite c9 2.15.6.047 OTU 3 seqs prokMSA_id:071316 AJ290035 GKS2-33 prokMSA_id:069774 AJ290060 GKS2-19 prokMSA_id:025789 AJ290063 GKS2-111 2.15.6.048 OTU 1 seq prokMSA_id:025907 AF403187 clone cvf122218 2.15.6.049 OTU 1 seq prokMSA_id:025963 AF366581 Acanthamoeba sp. TUMSJ-321 2.15.6.050 OTU 2 seqs prokMSA_id:026447 AF445684 CFB group clone SM1E06 prokMSA_id:087893 AY293507 Bacteroidetes clone FL08H07 2.15.6.051 OTU 1 seq prokMSA_id:026841 AF188175 KEppib45 2.15.6.052 OTU 1 seq prokMSA_id:027038 AF174431 Spirosoma sp. HDK211 2.15.6.053 OTU 1 seq prokMSA_id:027828 AY037584 soil clone S051 2.15.6.054 OTU 2 seqs prokMSA_id:054775 AH010205 Lake Michigan sediment LMBA40 prokMSA_id:028645 AY012531 Lake Michigan sediment LMBA40 2.15.6.055 OTU 1 seq prokMSA_id:029165 X85209 Unknown organism 0411 2.15.6.056 OTU 1 seq prokMSA_id:029716 AF195439 CFB group kpj167rc 2.15.6.057 OTU 1 seq prokMSA_id:071214 AJ244689 Cyclobacterium sp. V4.MS.32 2.15.6.058 OTU 1 seq prokMSA_id:029921 AY038782 CFB group clone TAF-A28 2.15.6.059 OTU 1 seq prokMSA_id:030914 AF245039 Cytophaga 67C12 2.15.6.060 OTU 1 seq prokMSA_id:031806 AF174432 Spirosoma sp. HDK201 2.15.6.061 OTU 1 seq prokMSA_id:032162 AY038778 CFB group clone TAF-B75 2.15.6.062 OTU 1 seq prokMSA_id:058647 AB078038 Flexibacter aggregans strain:IFO 15974 2.15.6.063 OTU 1 seq prokMSA_id:032392 AY038796 CFB group clone TAF-B84 2.15.6.064 OTU 4 seqs prokMSA_id:058638 AB078050 Flexibacter flexilis strain:IFO 15060 prokMSA_id:058637 AB078051 Flexibacter flexilis strain:IFO 16025 prokMSA_id:058636 AB078052 Flexibacter flexilis strain:IFO 16026 prokMSA_id:058635 AB078053 Flexibacter flexilis strain:IFO 16027 2.15.6.066 OTU 1 seq prokMSA_id:058634 AB078054 Flexibacter flexilis subsp. pelliculosus strain:IFO 16028 2.15.6.067 OTU 3 seqs prokMSA_id:055293 AB078048 Flexibacter elegans strain:IFO 15055 prokMSA_id:058626 AB078062 Flexibacter roseolus strain:IFO 16486 prokMSA_id:058623 AB078064 Flexibacter ruber strain:IFO 16675 2.15.6.068 OTU 2 seqs prokMSA_id:046238 AF316793 Crater Lake CL0-73 prokMSA_id:032684 AF316794 Crater Lake CL0-103 2.15.6.069 OTU 1 seq prokMSA_id:058624 AB078065 Flexibacter ruber strain:IFO 16677 2.15.6.070 OTU 4 seqs prokMSA_id:058619 AB078069 Flexibacter tractuosus strain:IFO 15979 prokMSA_id:058617 AB078071 Flexibacter tractuosus strain:IFO 15981 prokMSA_id:058616 AB078072 Flexibacter tractuosus strain:IFO 15989 prokMSA_id:058607 AB078081 Microscilla sericea strain:IFO 15983 2.15.6.071 OTU 2 seqs prokMSA_id:058615 AB078073 Flexibacter tractuosus strain:IFO 16035 prokMSA_id:058612 AB078076 Flexibacter tractuosus strain:IFO 16482 2.15.6.072 OTU 1 seq prokMSA_id:058614 AB078075 Flexibacter tractuosus strain:IFO 16038 2.15.6.073 OTU 1 seq prokMSA_id:058613 AB078074 Flexibacter tractuosus strain:IFO 16037 2.15.6.074 OTU 1 seq prokMSA_id:058609 AB078079 Microscilla furvescens strain:IFO 15994 2.15.6.075 OTU 1 seq prokMSA_id:058608 AB078080 Microscilla marina strain:IFO 16560 2.15.6.076 OTU 1 seq prokMSA_id:058606 AB078082 Microscilla sericea strain:IFO 16561 2.15.6.077 OTU 1 seq prokMSA_id:033001 AF445661 CFB group clone SM1C04 2.15.6.078 OTU 1 seq prokMSA_id:033872 AF215634 Endosymbiont of Acanthamoeba sp. Hungarian isolate 2.15.6.079 OTU 7 seqs prokMSA_id:067489 AF493693 Flectobacillus sp. EP293 prokMSA_id:072722 AJ011696 Flectobacillus sp. Isolate GWF23A prokMSA_id:035716 AJ289964 isolate AH57 prokMSA_id:077393 AJ535729 Arcocella aquatica strain NO-502T prokMSA_id:077560 AY065625 Flectobacillus speluncae strain GWF20C prokMSA_id:077370 AY065626 Flectobacillus speluncae strain GWF20B prokMSA_id:091727 AY345549 H22 2.15.6.080 OTU 1 seq prokMSA_id:036224 AF408270 Hymenobacter group clone KL-53-2-6 2.15.6.081 OTU 1 seq prokMSA_id:036284 Y15342 Microscilla sp. isolate PRLIST05 2.15.6.082 OTU 1 seq prokMSA_id:038021 AF424348 CFB group MERTZ_0CM_57 2.15.6.085 OTU 1 seq prokMSA_id:038833 AF188173 KEppib22 2.15.6.086 OTU 1 seq prokMSA_id:039931 AF142910 ORGANIC-8 2.15.6.087 OTU 1 seq prokMSA_id:040101 AF445698 CFB group clone SM1G04 2.15.6.088 OTU 1 seq prokMSA_id:040349 AF408276 Hymenobacter sp. clone KL-26-2-11 2.15.6.089 OTU 2 seqs prokMSA_id:041126 AF408272 Taxeobacter sp. clone KL-2-5-12 prokMSA_id:070352 AF408308 Hymenobacter group clone KL-93-1-10 2.15.6.090 OTU 2 seqs prokMSA_id:042106 AF188170 MC-2 prokMSA_id:048801 AF188172 KEppib35 2.15.6.091 OTU 1 seq prokMSA_id:042147 AF275712 Hailaer soda lake Z3 2.15.6.092 OTU 1 seq prokMSA_id:042591 AF446244 CFB group Lig060299-6.12 2.15.6.093 OTU 1 seq prokMSA_id:042709 AF227830 str. 47077 2.15.6.094 OTU 1 seq prokMSA_id:043316 AF408277 Hymenobacter group clone KL-27-1-11 2.15.6.095 OTU 2 seqs prokMSA_id:044113 AF446282 CFB group FL14H06 prokMSA_id:087931 AY293563 Bacteroidetes clone FL14H11 2.15.6.096 OTU 1 seq prokMSA_id:044743 AY038777 CFB group clone TAF-B90 2.15.6.097 OTU 1 seq prokMSA_id:045068 AJ252723 Potato plant root clone RC-III-57 2.15.6.098 OTU 1 seq prokMSA_id:045409 AJ252578 Agricultural soil isolate SI-11 2.15.6.099 OTU 1 seq prokMSA_id:046730 AF361196 Cytophagales clone 13 2.15.6.100 OTU 1 seq prokMSA_id:047791 AF408300 Hymenobacter group clone KL-2-4-4 2.15.6.101 OTU 1 seq prokMSA_id:048679 AY038776 CFB group clone TAF-B81 2.15.6.102 OTU 1 seq prokMSA_id:057447 AJ441237 CFB group clone P. palm A 21 2.15.6.103 OTU 1 seq prokMSA_id:049420 AJ232846 clone LRS4 2.15.6.104 OTU 1 seq prokMSA_id:049706 AY038780 CFB group clone TAF-B66 2.15.6.105 OTU 1 seq prokMSA_id:049920 AF314419 PHOS-HE21 2.15.6.106 OTU 1 seq prokMSA_id:069756 AJ318137 clone BIgi5 2.15.6.107 OTU 1 seq prokMSA_id:050769 AJ252690 Rhizosphere soil clone RSC-II-66 2.15.6.108 OTU 1 seq prokMSA_id:050855 AJ252694 Rhizosphere soil clone RSC-II-76 2.15.6.109 OTU 1 seq prokMSA_id:069788 AJ252610 Agricultural soil clone SC-I-6 2.15.6.110 OTU 1 seq prokMSA_id:052740 AY038790 CFB group clone TAF-A11 2.15.6.111 OTU 1 seq prokMSA_id:052858 AY038791 CFB group clone TAF-A130 2.15.6.112 OTU 1 seq prokMSA_id:053218 AJ290037 GKS2-70 2.15.6.113 OTU 1 seq prokMSA_id:053303 AF328217 clone KS84 2.15.6.114 OTU 1 seq prokMSA_id:056834 AY149749 Cytophaga sp. SIMO CL-S30-76 2.15.6.115 OTU 1 seq prokMSA_id:059812 AY133378 clone BB2_75 2.15.6.116 OTU 1 seq prokMSA_id:059894 AY133105 Bacteroidetes clone ccspost2184 2.15.6.117 OTU 1 seq prokMSA_id:060399 AF513436 Flexibacter group LA48 2.15.6.118 OTU 1 seq prokMSA_id:060633 AF406540 CFB group clone AEGEAN_150 2.15.6.121 OTU 7 seqs prokMSA_id:018370 AF316789 Crater Lake CL0-57 prokMSA_id:020316 AF316790 Crater Lake CL500-6 prokMSA_id:023850 AF388889 CFB group GOBB3-CL142 clone GOBB3-CL142 prokMSA_id:060795 AF491658 CFB group clone SFD1-15 prokMSA_id:060783 AF491675 CFB group clone SFD1-7 prokMSA_id:060780 AF491677 CFB group clone SFD1-9 prokMSA_id:091207 AY345577 clone GLBR-3 2.15.6.122 OTU 1 seq prokMSA_id:060849 AY135927 clone SG2-137 2.15.6.123 OTU 1 seq prokMSA_id:064410 AY102913 clone BCM3S-8B 2.15.6.124 OTU 1 seq prokMSA_id:064423 AY102900 clone BCM3P-4B 2.15.6.125 OTU 1 seq prokMSA_id:064437 AY102885 clone BCM1-49B 2.15.6.126 OTU 1 seq prokMSA_id:065601 AF507798 soil clone S1243 2.15.6.127 OTU 1 seq prokMSA_id:065709 AF507672 soil clone C1201 2.15.6.128 OTU 1 seq prokMSA_id:065713 AF507670 soil clone C1197 2.15.6.129 OTU 1 seq prokMSA_id:066032 AB073591 Cytophaga sp. T-561 2.15.6.130 OTU 2 seqs prokMSA_id:066499 AY100592 clone cvf76004 prokMSA_id:066496 AY100593 clone cvf116033 2.15.6.131 OTU 1 seq prokMSA_id:066524 AY100557 clone cvf67003 2.15.6.132 OTU 1 seq prokMSA_id:066532 AY100547 clone cvf116083 2.15.6.133 OTU 1 seq prokMSA_id:066542 AY100538 clone cvf116075 2.15.6.134 OTU 2 seqs prokMSA_id:067391 AJ456976 Cytophaga sp. LSc-2 isolate LSc-2 prokMSA_id:091779 AY345439 K2-10 2.15.6.135 OTU 1 seq prokMSA_id:067626 AF489285 CFB group isolate K383 2.15.6.136 OTU 1 seq prokMSA_id:071358 AY038789 CFB group clone TAF-A9 2.15.6.137 OTU 1 seq prokMSA_id:074081 AY038797 CFB group clone TAF-A99 2.15.6.138 OTU 2 seqs prokMSA_id:074473 AY038783 CFB group clone TAF-A44 prokMSA_id:074295 AY038787 CFB group clone TAF-B100 2.15.6.139 OTU 2 seqs prokMSA_id:075729 AY154588 earthworm cast clone c232 prokMSA_id:094866 NZ_AABD020 Cytophaga hutchinsonii Chut_22 whole genome shotgun 2.15.6.140 OTU 1 seq prokMSA_id:076175 AY154640 earthworm cast clone c301 2.15.6.141 OTU 1 seq prokMSA_id:076310 AY154524 earthworm intestine clone ew62 2.15.6.142 OTU 1 seq prokMSA_id:076741 AY168735 clone HC-2 2.15.6.143 OTU 1 seq prokMSA_id:077448 AY167836 Taxeobacter sp. SAFR-023 2.15.6.144 OTU 1 seq prokMSA_id:077550 AY167829 Taxeobacter sp. SAFR-033 2.15.6.145 OTU 1 seq prokMSA_id:077814 AY171303 clone s42 2.15.6.146 OTU 1 seq prokMSA_id:077880 AY171356 clone s15 2.15.6.147 OTU 1 seq prokMSA_id:077881 AY171310 clone s106 2.15.6.148 OTU 1 seq prokMSA_id:077886 AB074612 CFB group clone:APe4_73 2.15.6.149 OTU 1 seq prokMSA_id:079534 AY187352 clone csbio160236 2.15.6.150 OTU 6 seqs prokMSA_id:080290 AF468332 clone ARKMP-14 prokMSA_id:080153 AF468337 clone ARKCRY-118 prokMSA_id:079655 AF468338 clone ARKCRY-50 prokMSA_id:080447 AF468340 clone ARKCRY-20 prokMSA_id:080558 AF468342 clone ARKCRY-39 prokMSA_id:081016 AY198110 clone ARKCRY2 2.15.6.151 OTU 1 seq prokMSA_id:079737 AY193144 clone Bol18 2.15.6.152 OTU 2 seqs prokMSA_id:080784 AY193149 Bacteroidetes clone BTM80 prokMSA_id:079778 AY193152 Bacteroidetes clone BTM62 2.15.6.153 OTU 1 seq prokMSA_id:080266 AF468341 clone ARKCRY-14 2.15.6.154 OTU 1 seq prokMSA_id:080309 AF468339 clone ARKCRY-93 2.15.6.155 OTU 5 seqs prokMSA_id:080523 AF468433 Arctic sea ice ARK10280 prokMSA_id:085114 AJ441012 Antarctic R-9286 strain R-9286 prokMSA_id:093224 AJ577141 Rhodovirga antarctica strain R-10710 prokMSA_id:094046 AJ577142 Rhodovirga antarctica strain R-11427 prokMSA_id:093561 AJ577267 Rhodovirga antarctica strain R-9286 2.15.6.156 OTU 1 seq prokMSA_id:081798 AY218749 clone KD6-118 2.15.6.157 OTU 1 seq prokMSA_id:082222 AJ549285 Hymenobacter sp. NS/50 strain NS/50 2.15.6.158 OTU 1 seq prokMSA_id:082234 AJ549284 Hymenobacter sp. NS/2 strain NS/2 2.15.6.159 OTU 4 seqs prokMSA_id:083668 AY279979 Spirosoma escalantus strain HDK627 prokMSA_id:083691 AY279980 Spirosoma escalantus strain HDK201 prokMSA_id:082506 AY279981 Spirosoma escalantus strain HDK691 prokMSA_id:085731 AY279982 Spirosoma linguale 2.15.6.160 OTU 1 seq prokMSA_id:082548 AY264838 Flexibacteraceae IMSNU 14012 2.15.6.161 OTU 3 seqs prokMSA_id:085754 AY279976 Spirosoma navajo strain HDK663 prokMSA_id:082819 AY279977 Spirosoma navajo strain HDK666 prokMSA_id:084249 AY279978 Spirosoma navajo strain HDK660 2.15.6.163 OTU 19 seqs prokMSA_id:002585 AB001518 unnamed organism. prokMSA_id:093122 AB116514 Endosymbiont of Brevipalpus californicus prokMSA_id:092039 AB116515 Endosymbiont of Brevipalpus lewisi prokMSA_id:027784 AF319783 Encarsia pergandiella asexual line endosymbiont prokMSA_id:038123 AF350221 Brevipalpus phoenicis endosymbiont prokMSA_id:070565 AY026333 Encarsia citrina endosymbiont prokMSA_id:048154 AY026334 Encarsia hispida endosymbiont prokMSA_id:032526 AY026335 Encarsia pergandiella sexual line endosymbiont prokMSA_id:053944 AY026336 Encarsia berlesei endosymbiont prokMSA_id:082769 AY279401 Endosymbiont of Brevipalpus obovatus prokMSA_id:083219 AY279406 Endosymbiont of Encarsia sp. 2 prokMSA_id:086289 AY279407 Endosymbiont of Encarsia lutea prokMSA_id:085539 AY279408 Endosymbiont of Encarsiella noyesi prokMSA_id:084920 AY279410 Endosymbiont of Petrobia harti prokMSA_id:082984 AY279411 Endosymbiont of Balaustium sp. prokMSA_id:082774 AY279412 Endosymbiont of Brevipalpus phoenicis prokMSA_id:083119 AY279413 Endosymbiont of Metaseiulus occidentalis prokMSA_id:082648 AY279414 Endosymbiont of Oppiella nova prokMSA_id:082482 AY285777 Endosymbiont of Encarsia sp. 3 2.15.6.164 OTU 4 seqs prokMSA_id:083469 AY279402 Endosymbiont of Aspidiotus nerii prokMSA_id:084888 AY279403 Endosymbiont of Aphytis sp. 4 prokMSA_id:083840 AY279404 Endosymbiont of Aphytis lingnanensis prokMSA_id:083033 AY279405 Endosymbiont of Aphytis sp. 3 2.15.6.165 OTU 1 seq prokMSA_id:083153 AJ440980 Antarctic R-7572 strain R-7572 2.15.6.166 OTU 1 seq prokMSA_id:083888 AY279415 Endosymbiont of Dicranotropis hamata 2.15.6.167 OTU 1 seq prokMSA_id:085710 AY279409 Endosymbiont of Bemisia tabaci biotype A 2.15.6.168 OTU 1 seq prokMSA_id:085985 AY264839 Flexibacteraceae IMSNU 14013 2.15.6.169 OTU 1 seq prokMSA_id:086650 AY274139 clone D133 2.15.6.170 OTU 1 seq prokMSA_id:087068 AY268273 clone E11 small subunit 2.15.6.171 OTU 1 seq prokMSA_id:087217 AY278923 Taxeobacter gelupurpurascens 2.15.6.172 OTU 1 seq prokMSA_id:087690 AY268239 clone G6 small subunit 2.15.6.173 OTU 1 seq prokMSA_id:087750 AY268268 clone B1 small subunit 2.15.6.174 OTU 1 seq prokMSA_id:088967 AY313907 Cytophagales clone P200-71 2.15.6.175 OTU 1 seq prokMSA_id:089090 AY271301 Bacteroidetes endosymbiont of Bemisia tabaci polymerase I polA complete cds; and 2.15.6.176 OTU 1 seq prokMSA_id:089187 AY313918 Cytophagales clone TD-40 2.15.6.177 OTU 1 seq prokMSA_id:089764 AY321414 clone S27 2.15.6.178 OTU 2 seqs prokMSA_id:089802 AJ564642 Bellia baltica strain BA1 prokMSA_id:090126 AJ564643 Bellia baltica strain BA134 T 2.15.6.179 OTU 1 seq prokMSA_id:089850 AY313911 Cytophagales clone P60-25 2.15.6.180 OTU 1 seq prokMSA_id:090078 AJ565431 Bacteroidetes MWH-CFBk5 isolate MWH-CFBk5 2.15.6.181 OTU 1 seq prokMSA_id:090147 AJ567587 Bacteroidetes clone MBAE28 2.15.6.182 OTU 1 seq prokMSA_id:090334 AY313916 Cytophagales clone P200-12 2.15.6.183 OTU 1 seq prokMSA_id:091155 AY349464 Cyclobacterium sp. WHOI JT-21 2.15.6.184 OTU 1 seq prokMSA_id:091944 AY345507 clone W4A-D01 2.15.6.185 OTU 1 seq prokMSA_id:092769 AY354148 clone pIR3BH02 2.15.6.186 OTU 1 seq prokMSA_id:093459 AY259502 Cyclobacterium sp. 'BSB S2 03' 2.15.6.187 OTU 1 seq prokMSA_id:093540 AJ582050 CFB group clone JG36-GS-7 2.15.6.188 OTU 1 seq prokMSA_id:096021 Y14148 Ixodes scapularis endosymbiont isolate ISR08 2.15.6.189 OTU 1 seq prokMSA_id:096562 AY225659 Bacteroidetes clone AT-s98 2.15.6.999 poor quality 252 seqs prokMSA_id:029643 AB007006 Freshwater obligate oligotroph IO-95 prokMSA_id:069264 AB007009 Cytophaga sp. prokMSA_id:002589 AB013834 Cytophaga sp. str. 50.n. prokMSA_id:017944 AB064674 clone:NK192 prokMSA_id:064009 AB087366 clone:F76 prokMSA_id:083148 AB106923 Bacteroidetes 5-5 prokMSA_id:093495 AB118672 Bacteroidetes C-1 strain:C-1 prokMSA_id:093512 AB118677 Bacteroidetes C-19 strain:C-19 prokMSA_id:093718 AB118678 Bacteroidetes C-3 strain:C-3 prokMSA_id:035361 AF009993 prokMSA_id:035178 AF010026 prokMSA_id:016630 AF010035 prokMSA_id:045757 AF010069 prokMSA_id:030417 AF010105 prokMSA_id:068949 AF018001 T2702b prokMSA_id:068947 AF018015 T2719c prokMSA_id:068946 AF018023 T2767c prokMSA_id:068945 AF018027 T2785c prokMSA_id:023647 AF078352 Grassland soil clone sl1_215 prokMSA_id:033129 AF078359 Grassland soil clone sl1_222 prokMSA_id:070232 AF097822 clone 49527 prokMSA_id:027928 AF126148 Thiothrix eikelboomii isolate Ben41 prokMSA_id:020617 AF128633 soil C0120 prokMSA_id:046610 AF128636 soil C0196 prokMSA_id:045782 AF128659 soil C0210 prokMSA_id:047481 AF141436 Cytophagales clone CRE-FL3 prokMSA_id:047582 AF141460 Cytophagales clone CRE-FL39 prokMSA_id:029436 AF141497 Cytophagales clone CRE-PA7 prokMSA_id:021584 AF145860 Metal-contaminated soil clone K20-69 prokMSA_id:047660 AF175606 WJGRT-60 prokMSA_id:048250 AF175608 WJGRT-63 prokMSA_id:033191 AF175661 WJGRT-172 prokMSA_id:028568 AF182020 Flectobacillus sp. BAL49 prokMSA_id:077400 AF188878 18 prokMSA_id:051417 AF195442 Microscilla kpc117f prokMSA_id:025400 AF226217 maize root Zmrc179 prokMSA_id:033468 AF226247 maize root Zmrc252 prokMSA_id:034154 AF234058 #0319-2D9 prokMSA_id:033215 AF234076 #0319-6J10 prokMSA_id:018342 AF234115 #0319-8P19 prokMSA_id:069169 AF245328 SA13 prokMSA_id:054715 AF268286 Cytophagales ESR 2 prokMSA_id:040157 AF268856 glc13 prokMSA_id:050996 AF268858 glc15 prokMSA_id:031714 AF281106 sp. sbr-gs16 prokMSA_id:043564 AF289907 Cytophagales Kmlps6-10 prokMSA_id:037947 AF328230 clone KS83f prokMSA_id:044563 AF332304 clone T26-32 prokMSA_id:051421 AF337202 clone LCo36 prokMSA_id:018937 AF337203 clone LCo37 prokMSA_id:016664 AF337204 clone LCo38 prokMSA_id:023578 AF337206 clone LCo70 prokMSA_id:018615 AF337207 clone LCo71 prokMSA_id:027561 AF345917 CFB group prokMSA_id:068221 AF365502 clone BM89MF5BC4 prokMSA_id:068187 AF365537 clone BT49MF4BF11 prokMSA_id:068166 AF365564 clone BT49MF4BD4 prokMSA_id:068168 AF365565 clone BT49MF4BD6 prokMSA_id:068162 AF365570 clone BT49MF4BE12 prokMSA_id:068146 AF365588 clone BT60MF2BB10 prokMSA_id:068124 AF365610 clone BT60MF7BC10 prokMSA_id:068110 AF365626 clone BT60MF7BH4 prokMSA_id:068089 AF365653 clone BM89DS6BA3 prokMSA_id:068074 AF365669 clone BM89DS6BbE8 prokMSA_id:068035 AF365715 clone BT60DS1BH1 prokMSA_id:068029 AF365721 clone BT60DS4B6 prokMSA_id:067999 AF365760 clone BT60DS4BF7 prokMSA_id:067967 AF365801 clone BM89PA1BbH7 prokMSA_id:018496 AF392702 clone TCD11 prokMSA_id:036695 AF392703 clone TCG2 prokMSA_id:034610 AF424745 clone M3rb1 prokMSA_id:028398 AF424746 clone M3rb2 prokMSA_id:052824 AF428622 clone CRD99-44 prokMSA_id:023107 AF428705 clone CRP99-51 prokMSA_id:028421 AF428732 clone CR98-5-02 prokMSA_id:021906 AF428792 clone CR98-5-62 prokMSA_id:050401 AF428793 clone CR98-5-63 prokMSA_id:030688 AF428831 clone CR98-24-25 prokMSA_id:029645 AF428846 clone CR98-24-40 prokMSA_id:047912 AF429027 clone CR99-35-69 prokMSA_id:021221 AF429060 clone CR99-7-26 prokMSA_id:016999 AF429095 clone CR99-7-61 prokMSA_id:051813 AF429102 clone CR99-7-68 prokMSA_id:053372 AF429232 clone CR99-2-46 prokMSA_id:023556 AF429238 clone CR99-2-52 prokMSA_id:021018 AF429248 clone CR99-2-62 prokMSA_id:048033 AF429250 clone CR99-2-64 prokMSA_id:027950 AF429251 clone CR99-2-65 prokMSA_id:050927 AF429256 clone CR99-2-70 prokMSA_id:021585 AF432292 CFB group FO-26d-6 prokMSA_id:028690 AF432327 CFB group 4%N-0d-18 prokMSA_id:044634 AF432332 Cytophaga sp. 4%N-0d-10 prokMSA_id:076652 AF432724 clone S21.48WL prokMSA_id:021197 AF441954 CFB group clone CD12B11 prokMSA_id:044573 AF441970 CFB group clone CD12A2 prokMSA_id:026593 AF446281 CFB group FL08F01 prokMSA_id:019793 AF446289 CFB group FL08H05 prokMSA_id:048843 AF460871 Marine SIMO-IS107 prokMSA_id:042711 AF460875 Marine SIMO-IS111 prokMSA_id:081996 AF466714 CFB group clone DBW2 prokMSA_id:072022 AF466891 CFB group isolate DGGE band C33.2 prokMSA_id:074284 AF466909 CFB group isolate DGGE band D16 prokMSA_id:067512 AF493865 clone 26 prokMSA_id:066442 AF497873 CFB group isolate WB5-37 prokMSA_id:065752 AF507626 soil clone C1120 prokMSA_id:065734 AF507647 soil clone C1217 prokMSA_id:065619 AF507781 soil clone S1206 prokMSA_id:055366 AF531006 Bacteroidetes zo35 prokMSA_id:058805 AF540043 Bacteroidetes DGGE gel band ESR BR 8 prokMSA_id:078881 AF543362 clone C prokMSA_id:078493 AF543363 clone D prokMSA_id:069359 AF544919 alpha clone 2-6-6 prokMSA_id:078755 AF547030 332 prokMSA_id:075996 AF550593 Cytophagales clone LiUU-1-4 prokMSA_id:044761 AJ005988 clone TBS17 prokMSA_id:022983 AJ005990 clone TBS28 prokMSA_id:040997 AJ011154 4-19 clone 4-19 prokMSA_id:050619 AJ225338 Cytophaga/Flexibacter-like species ; clone 21 prokMSA_id:050318 AJ232790 clone TRS29 prokMSA_id:050370 AJ252599 Rhizosphere soil isolate RSI-32 prokMSA_id:072103 AJ290058 GKS2-7 prokMSA_id:072025 AJ290059 GKS2-15 prokMSA_id:036151 AJ290061 GKS2-63 prokMSA_id:045853 AJ290062 GKS2-88 prokMSA_id:071640 AJ290064 GKS2-112 prokMSA_id:046208 AJ290065 GKS2-120 prokMSA_id:037622 AJ290066 GKS2-121 prokMSA_id:071648 AJ290069 GKS2-207 prokMSA_id:073713 AJ290070 GKS2-205 prokMSA_id:032812 AJ290071 GKS2-155 prokMSA_id:017625 AJ290072 GKS2-232 prokMSA_id:019968 AJ297617 clone C44K17 prokMSA_id:074288 AJ298922 Flectobacillus sp. CZ236a isolate CZ236a prokMSA_id:023859 AJ308274 clone F99_12 prokMSA_id:016716 AJ308278 clone F99_15b prokMSA_id:024065 AJ311415 maize rhizosphere c15_45 prokMSA_id:049322 AJ315696 ML24 strain ML24 prokMSA_id:033735 AJ319026 Sporocytophaga myxococcoides strain DSM 11118T prokMSA_id:059237 AJ319847 SB-6/55-AG prokMSA_id:070939 AJ319848 SB-63-AG prokMSA_id:073987 AJ319849 SB-54-AG prokMSA_id:030819 AJ400510 clone Hb1-K38 prokMSA_id:043750 AJ400513 clone Hb1-K62 prokMSA_id:035926 AJ400514 clone Hb1-K108 prokMSA_id:048670 AJ400515 clone Hb1-K119 prokMSA_id:050467 AJ400517 clone Hb1-K103 prokMSA_id:071855 AJ400554 clone Hb6-K10 prokMSA_id:037992 AJ400556 clone Hb6-K24 prokMSA_id:033340 AJ400560 clone Hb6-k6 prokMSA_id:035267 AJ400569 clone G4-K27 prokMSA_id:024577 AJ400574 clone G4-K5 prokMSA_id:051351 AJ404536 SB6 prokMSA_id:061747 AJ416196 clone Sta1-45 prokMSA_id:061725 AJ416211 clone Sta2-28 prokMSA_id:061721 AJ416218 clone Sta3-04 prokMSA_id:061716 AJ416223 clone Sta3-17 prokMSA_id:061693 AJ416250 clone Sta4-41 prokMSA_id:019601 AJ421164 clone C7-K19 prokMSA_id:030460 AJ431312 CFB group clone 2_18 prokMSA_id:052535 AJ431316 CFB group clone 2_21 prokMSA_id:035917 AJ437413 clone 1_34_115 prokMSA_id:028865 AJ437424 clone 1_34_219 prokMSA_id:018862 AJ437431 clone 1_34_306 prokMSA_id:030245 AJ437443 clone 1_34_110 prokMSA_id:033124 AJ437446 clone 1_34_319 prokMSA_id:068679 AJ438184 Microchaete tenera prokMSA_id:066156 AJ487531 cytophaga sp. clone NCh23-RI16 prokMSA_id:063898 AJ493378 clone m3-7a prokMSA_id:057099 AJ518437 clone Neu4P3-5 prokMSA_id:056910 AJ518680 clone Sai4P1-49 prokMSA_id:088502 AJ568012 Cytophaga sp. isolate DGGE-50 prokMSA_id:040729 AY034833 CA2 prokMSA_id:031081 AY034834 CA3 prokMSA_id:040515 AY037588 soil clone S055 prokMSA_id:023403 AY037613 soil clone S090 prokMSA_id:019952 AY037618 soil clone S098 prokMSA_id:023481 AY037726 earthworm cast clone C122 prokMSA_id:026526 AY038535 CFB group clone CD1E4 prokMSA_id:031196 AY038537 clone CD1F3 prokMSA_id:054609 AY038552 CFB group clone CD1F4 prokMSA_id:071526 AY038775 CFB group clone TAF-B56 prokMSA_id:071604 AY038779 CFB group clone TAF-B40 prokMSA_id:073741 AY038781 CFB group clone TAF-B77 prokMSA_id:073680 AY038785 CFB group clone TAF-A125 prokMSA_id:069829 AY038786 CFB group clone TAF-A195 prokMSA_id:072898 AY038792 CFB group clone TAF-A173 prokMSA_id:074144 AY038793 CFB group clone TAF-A186 prokMSA_id:022893 AY038794 CFB group clone TAF-A231 prokMSA_id:065550 AY095411 yard-trimming-compost clone S-42 prokMSA_id:066123 AY100682 Flectobacillus sp. L84 prokMSA_id:059136 AY121824 clone ML-2 prokMSA_id:060893 AY135875 clone SG1-75 prokMSA_id:077498 AY139004 pBC16S4-32 prokMSA_id:074335 AY145599 CFB group clone DC8-48-2 prokMSA_id:056538 AY146658 Bacteroidetes K4 prokMSA_id:075487 AY149207 DGGE band C5 prokMSA_id:056827 AY149757 Cytophaga sp. SIMO CL-S30-87 prokMSA_id:056788 AY149811 Cytophaga sp. SIMO CL-S29-52 prokMSA_id:076731 AY168752 clone HC-83 prokMSA_id:078265 AY171349 clone s83 prokMSA_id:082113 AY192028 Flavobacteria clone G15-GM4R prokMSA_id:084452 AY214755 Bacteroidetes clone BB-1-F1 prokMSA_id:084719 AY241557 Marine HP11 prokMSA_id:085699 AY241560 Marine HP23 prokMSA_id:087228 AY268303 clone G1 small subunit prokMSA_id:087859 AY278928 Hymenobacter sp. TB23 prokMSA_id:087768 AY293497 Bacteroidetes clone FL08A06 prokMSA_id:089416 AY311816 Dpcom118 prokMSA_id:088102 AY311820 Dpcom122 prokMSA_id:089086 AY313908 Cytophagales clone P60-11 prokMSA_id:088890 AY313909 Cytophagales clone P60-12 prokMSA_id:089768 AY313910 Cytophagales clone P60-13 prokMSA_id:089123 AY313912 Cytophagales clone P60-31 prokMSA_id:090447 AY313913 Cytophagales clone P60-37 prokMSA_id:090617 AY313914 Cytophagales clone P60-92 prokMSA_id:088429 AY313915 Cytophagales clone P60-94 prokMSA_id:088237 AY313917 Cytophagales clone P200-26 prokMSA_id:091614 AY337039 Cytophagales clone 2-RIV prokMSA_id:092277 AY357898 Saltmarsh sediment NRL-CB18 prokMSA_id:093956 AY358004 iRIII15 prokMSA_id:094084 AY364059 clone cRI4d prokMSA_id:094859 AY369159 clone T-OTU3 prokMSA_id:095109 AY369164 clone T-OTU8 prokMSA_id:097747 AY394634 Bacteroidetes clone N9-24 prokMSA_id:095854 AY395131 clone D07ST prokMSA_id:097848 AY423898 Flectobacillus sp. Td prokMSA_id:002606 D12658 Cytophaga aurantiaca NCIMB 8628 . prokMSA_id:002578 D12663 Cytophaga hutchinsonii str. D465 P.H.A. Sneath DSM 1761 . prokMSA_id:002597 L13131 str. B273. prokMSA_id:002582 M58768 Cytophaga hutchinsonii str. D465 P.H.A. Sneath ATCC 33406 . prokMSA_id:002583 M58783 Flexibacter elegans str. NZ-1 ATCC 23112 . prokMSA_id:002599 M58788 Flexibacter ruber str. Lewin GEY ATCC 23103 . prokMSA_id:002620 M58789 Flexibacter tractuosus str. Lewis BA-3 ATCC 23168 . prokMSA_id:002600 M58792 Microscilla furvescens str. TV-2 ATCC 23129. prokMSA_id:002579 M58793 Microscilla marina str. SIO-8 ATCC 23134 . prokMSA_id:002584 M58794 Microscilla sericea str. SIO-7 ATCC 23182. prokMSA_id:002594 M62786 Runella slithyformis ATCC 29530 . prokMSA_id:002591 M62787 Flectobacillus major ATCC 29496 . prokMSA_id:002610 M62788 Cyclobacterium marinum str. WH-A; Raj ATCC 43824. prokMSA_id:002598 M62789 Spirosoma linguale str. Mc1 ATCC 23276. prokMSA_id:002607 M62794 Flexibacter flexilis str. CR-63 ATCC 23079 . prokMSA_id:002590 NONE Cytophaga aurantiaca ATCC 12208 . prokMSA_id:002609 NONE Sporocytophaga myxococcoides ATCC 10010 . prokMSA_id:002581 U58341 str. E-35. prokMSA_id:026092 U63950 Flectobacillus sp. prokMSA_id:024339 U85105 cytophagales clone ACK-L4 prokMSA_id:002580 X89321 clone 4811. prokMSA_id:031386 X89911 Spirosoma-like sp. PC5.1A strain PC5.1A prokMSA_id:017665 X89919 Spirosoma-like sp. BF7 strain BF7 prokMSA_id:002616 X90703 IFAM 3215. prokMSA_id:030533 Y11628 clone 61 prokMSA_id:031375 Y17356 Hymenobacter actinosclerus 2.15.7 FLX.LITORALIS_GROUP 8 seqs 2.15.7.001 OTU 1 seq prokMSA_id:058632 AB078056 Flexibacter litoralis strain:IFO 15988 2.15.7.002 OTU 1 seq prokMSA_id:058628 AB078059 Flexibacter polymorphus strain:IFO 16703 2.15.7.003 OTU 1 seq prokMSA_id:058627 AB078061 Flexibacter roseolus strain:IFO 16030 2.15.7.004 OTU 1 seq prokMSA_id:058625 AB078063 Flexibacter roseolus strain:IFO 16707 2.15.7.999 poor quality 4 seqs prokMSA_id:002624 M58784 Flexibacter litoralis str. Lewin SIO-4 ATCC 23117 . prokMSA_id:002622 M58786 Flexibacter polymorphus ATCC 27820 . prokMSA_id:002625 M58787 Flexibacter roseolus str. Lewin CR-155 ATCC 23088 . prokMSA_id:002623 Z77380 unnamed organism. 2.15.8 TMN.LAPSUM_GROUP 10 seqs 2.15.8.001 OTU 3 seqs prokMSA_id:002632 AF018199 clone env.OPS 17. prokMSA_id:002631 AF027008 clone OPB73. prokMSA_id:022057 AF446288 CFB group FL08H02 2.15.8.002 OTU 3 seqs prokMSA_id:002628 Y08956 Thermonema rossianum str. NR-27T. prokMSA_id:002629 Y08957 Thermonema rossianum str. SC-1. prokMSA_id:002630 Y08958 Thermonema rossianum str. AG3-1. 2.15.8.003 OTU 1 seq prokMSA_id:002627 AF013555 unnamed organism. 2.15.8.004 OTU 1 seq prokMSA_id:002626 L11703 Thermonema lapsum ATCC 43542 . 2.15.8.005 OTU 1 seq prokMSA_id:065462 AY102323 clone a13121 2.15.8.999 poor quality 1 seq prokMSA_id:036527 AF141514 Cytophagales clone CRE-PA30 2.15.9 ENVIRONMENTAL_CLONE_PAD35 1 seq 2.15.9.999 poor quality 1 seq prokMSA_id:002633 D26222 soil from paddy field clone PAD35. 2.15.10 STR.SBR2085 1 seq 2.15.10.999 poor quality 1 seq prokMSA_id:002634 X84615 str. SBR2085. 2.15.11 RHODOTHERMUS_GROUP 142 seqs 2.15.11.001 OTU 1 seq prokMSA_id:002650 AB015587 Cytophaga sp. str. BD7-14. 2.15.11.002 OTU 1 seq prokMSA_id:002649 AB015543 Cytophaga sp. str. BD2-15. 2.15.11.003 OTU 1 seq prokMSA_id:002648 AB015524 Cytophaga sp. str. BD1-15. 2.15.11.004 OTU 1 seq prokMSA_id:002647 AF018187 clone env.OPS 2. 2.15.11.005 OTU 8 seqs prokMSA_id:051274 AF323499 Salinibacter ruber strain M1 prokMSA_id:028419 AF323500 Salinibacter ruber strain M31 prokMSA_id:027936 AF323501 Salinibacter ruber strain M8 prokMSA_id:037202 AF323502 Salinibacter ruber strain POLA 18 prokMSA_id:043485 AF323503 Salinibacter ruber strain POLA 13 prokMSA_id:064135 AF477892 'A2-UMH 8% pond' prokMSA_id:002642 AJ133744 clone EHB. prokMSA_id:002646 AJ242999 clone EHB-3. 2.15.11.006 OTU 2 seqs prokMSA_id:002644 AJ242997 clone EHB-5. prokMSA_id:002645 AJ242998 clone EHB-2. 2.15.11.007 OTU 1 seq prokMSA_id:002643 AJ242996 clone EHB-4. 2.15.11.008 OTU 1 seq prokMSA_id:002641 AF027013 clone OPS185. 2.15.11.009 OTU 1 seq prokMSA_id:002640 AF027006 clone OPB88. 2.15.11.010 OTU 1 seq prokMSA_id:002639 AF173818 clone LB3-13. 2.15.11.011 OTU 1 seq prokMSA_id:002638 AF068794 VC2.1 Bac16 complete 2.15.11.012 OTU 10 seqs prokMSA_id:043102 AF217493 Rhodothermus obamensis strain JCM 9785T prokMSA_id:074734 AF217494 Rhodothermus marinus strain DSM 4252T prokMSA_id:035404 AF217495 Rhodothermus marinus strain DSM 4253 prokMSA_id:038912 AF217496 Rhodothermus marinus strain PRQ-34 prokMSA_id:029905 AF217497 Rhodothermus marinus strain PRQ-55 prokMSA_id:037111 AF217498 Rhodothermus marinus strain NR-29 prokMSA_id:040858 AF217499 Rhodothermus marinus strain NR-32 prokMSA_id:037434 AJ011366 clone G25 OTU J prokMSA_id:002637 X77140 Rhodothermus marinus. prokMSA_id:002636 X80994 Rhodothermus marinus. 2.15.11.013 OTU 1 seq prokMSA_id:002635 X95071 Rhodothermus obamensis str. OKD7. 2.15.11.014 OTU 1 seq prokMSA_id:018484 AF195431 CFB group kpc103f 2.15.11.015 OTU 1 seq prokMSA_id:018539 AF348715 Cytophaga sp. clone MPD-21 2.15.11.017 OTU 2 seqs prokMSA_id:040844 AF314435 PHOS-HE36 prokMSA_id:064878 AJ412669 clone 19 2.15.11.018 OTU 3 seqs prokMSA_id:028722 AJ347764 SB1 group clone ST-12K12 prokMSA_id:039165 AJ347765 SB1 group clone ST-3K26 prokMSA_id:024251 AJ347766 SB1 group clone ST-12K29 2.15.11.019 OTU 1 seq prokMSA_id:026060 AF424349 CFB group MERTZ_0CM_89 2.15.11.020 OTU 1 seq prokMSA_id:026494 AJ229196 from anoxic bulk soil clone BSV40 2.15.11.021 OTU 1 seq prokMSA_id:030398 AF195435 CFB group kpj57rc 2.15.11.022 OTU 1 seq prokMSA_id:031644 AF468720 epsilon clone 33-PA85B98 2.15.11.024 OTU 1 seq prokMSA_id:058375 AF368188 candidate division OP10 clone SBRT197 2.15.11.025 OTU 2 seqs prokMSA_id:052416 AF424369 green sulfur MERTZ_2CM_69 prokMSA_id:037226 AF424373 green sulfur MERTZ_21CM_281 2.15.11.026 OTU 1 seq prokMSA_id:043898 AF424371 green sulfur MERTZ_21CM_53 2.15.11.027 OTU 1 seq prokMSA_id:045159 AF434944 sponge symbiont RSWS16 2.15.11.028 OTU 1 seq prokMSA_id:056483 AF477890 clone 6-UMH 31% pond 2.15.11.029 OTU 1 seq prokMSA_id:047823 AF348717 Cytophaga sp. clone MPD-36 2.15.11.030 OTU 1 seq prokMSA_id:048952 AJ347767 SB1 group clone ST-12K31 2.15.11.031 OTU 1 seq prokMSA_id:056594 AF477888 clone 13-UMH 31% pond 2.15.11.032 OTU 1 seq prokMSA_id:055316 AF507716 soil clone S1220 2.15.11.033 OTU 4 seqs prokMSA_id:023490 AF333538 gamma clone R63 prokMSA_id:033596 AF434946 sponge symbiont RSWS18 prokMSA_id:060166 AJ347046 clone TK44 prokMSA_id:096738 Y14143 Rhodothermus marinus isolate ISR03 2.15.11.034 OTU 2 seqs prokMSA_id:060616 AF407680 clone Y63 prokMSA_id:060610 AF407687 clone R15 2.15.11.035 OTU 1 seq prokMSA_id:060618 AF407678 clone Y30 2.15.11.036 OTU 1 seq prokMSA_id:062487 AF513957 Cytophagales clone LA7-B21N 2.15.11.037 OTU 1 seq prokMSA_id:062686 AF507872 Bacteroidetes clone ML623J-31 2.15.11.038 OTU 5 seqs prokMSA_id:080977 AF449782 CFB group clone ML602M-3 prokMSA_id:080582 AF449784 CFB group clone ML615J-21 prokMSA_id:080731 AF449787 CFB group clone ML817J-6 prokMSA_id:063866 AF452591 CFB group clone ML110J-29 prokMSA_id:062692 AF507870 Bacteroidetes clone ML602J-37 2.15.11.039 OTU 1 seq prokMSA_id:079458 AY187356 clone csbio160255 2.15.11.040 OTU 1 seq prokMSA_id:079504 AB099985 sequences clone: IheB3-7 2.15.11.041 OTU 1 seq prokMSA_id:085093 AJ495668 CFB group isolate SB-22 2.15.11.042 OTU 1 seq prokMSA_id:086522 AJ495692 CFB group isolate SB-47 2.15.11.043 OTU 1 seq prokMSA_id:088595 AY327874 Chlorobi clone SF_C4-C6 2.15.11.044 OTU 1 seq prokMSA_id:088824 AB113170 Aquificales clone:pCIRB-K 2.15.11.045 OTU 1 seq prokMSA_id:089638 AJ567581 Bacteroidetes clone MBAE20 2.15.11.046 OTU 1 seq prokMSA_id:091023 AY340841 clone SR_FBR_L83 2.15.11.047 OTU 1 seq prokMSA_id:092213 AY354188 clone pIR3BG12 2.15.11.048 OTU 6 seqs prokMSA_id:093695 AY329135 Chlorobi clone M4+C62 prokMSA_id:094267 AY329138 Chlorobi clone M4+C15 prokMSA_id:093805 AY329141 Chlorobi clone M4+C20 prokMSA_id:093895 AY329143 Chlorobi clone M4+C61 prokMSA_id:093409 AY329144 Chlorobi clone M4+C8 prokMSA_id:093535 AY329145 Chlorobi clone M4+C3 2.15.11.999 poor quality 62 seqs prokMSA_id:037216 AB075783 prokMSA_id:044393 AF320932 Lake Michigan sediment LMBA1 prokMSA_id:051707 AF358015 clone LO13.22 prokMSA_id:068058 AF365690 clone BT60DS1BB9 prokMSA_id:068021 AF365730 clone BT60DS4BB2 prokMSA_id:067952 AF365820 clone BT60PA10BB3 prokMSA_id:035497 AF367502 epsilon VC1.2-cl15 prokMSA_id:068931 AF417908 antarctic soil clone bh4.3 prokMSA_id:067741 AF423377 CFB group isolate DGGE band W2 prokMSA_id:037886 AF429224 clone CR99-2-38 prokMSA_id:033462 AF434975 sponge symbiont JAWS2 prokMSA_id:043156 AF446270 eukaryote FL14E08 ; chloroplast chloroplast product prokMSA_id:029376 AF469402 clone 33-PA44B00 prokMSA_id:064166 AF477846 prokaryote isolate DGGE Band 7-UIB 22% pond prokMSA_id:064163 AF477848 prokaryote isolate DGGE Band 11-UIB 31% pond prokMSA_id:064162 AF477849 prokaryote isolate DGGE Band 58-UIB 37% pond prokMSA_id:064161 AF477854 clone 7-PML 8% pond prokMSA_id:056662 AF477868 clone 3-PML 22% pond prokMSA_id:064149 AF477869 clone 4-PML 22% pond prokMSA_id:064147 AF477870 clone 5-PML 22% pond prokMSA_id:064138 AF477882 clone 3-PML 31% pond prokMSA_id:056456 AF477883 clone 4-PML 31% pond prokMSA_id:064137 AF477884 clone 5-PML 31% pond prokMSA_id:064136 AF477885 clone 6-PML 31% pond prokMSA_id:055845 AF477886 clone 7-PML 31% pond prokMSA_id:064134 AF477887 clone 8-PML 31% pond prokMSA_id:067098 AF499361 clone JCL9-30 prokMSA_id:025926 AH010340 Lake Michigan sediment LMBA1 and genes prokMSA_id:041343 AJ011663 DGGE amplificate BS1.2 prokMSA_id:021968 AJ011664 DGGE amplificate BS1.4 prokMSA_id:016577 AJ011665 DGGE amplificate BS1.3 prokMSA_id:028060 AJ287680 low G+C Gram-positive 307ev prokMSA_id:023078 AJ289226 RSD10 prokMSA_id:043834 AJ290986 SHE-140 prokMSA_id:063910 AJ493363 clone m1-2 prokMSA_id:063908 AJ493364 clone m1-3 prokMSA_id:063905 AJ493368 clone m1a-2 prokMSA_id:063903 AJ493371 clone m1a-6c prokMSA_id:063902 AJ493372 clone m1a-7a prokMSA_id:063899 AJ493379 clone m4-1 prokMSA_id:063895 AJ493382 clone m4-5a prokMSA_id:063888 AJ493389 clone m7-2 prokMSA_id:083468 AJ495603 CFB group isolate SA-2 prokMSA_id:086671 AJ495629 CFB group isolate SA-30 prokMSA_id:086645 AJ495683 CFB group isolate SB-38 prokMSA_id:085785 AJ495684 CFB group isolate SB-39 prokMSA_id:048048 AY037759 earthworm cast clone C157 prokMSA_id:083615 AY092394 clone BM120 prokMSA_id:086220 AY092395 clone BF50 prokMSA_id:086654 AY092396 clone BF28 prokMSA_id:085049 AY092397 clone BF14 prokMSA_id:083218 AY092398 clone BF21 prokMSA_id:060810 AY118144 Chloroflexi clone OR-M4 prokMSA_id:056819 AY149764 alpha SIMO CL-S30-95 prokMSA_id:075385 AY157129 CFB group isolate PG-28 prokMSA_id:075981 AY157139 Chloroflexi isolate PG-38 prokMSA_id:086187 AY261826 clone OTU ADB-66 prokMSA_id:093304 AY329137 Chlorobi clone M4+C13 prokMSA_id:094172 AY329139 Chlorobi clone M4+C19 prokMSA_id:094211 AY329140 Chlorobi clone M4+C2 prokMSA_id:094019 AY329142 Chlorobi clone M4+C5 prokMSA_id:091851 AY330657 Chlorobi 2.15.12 ENVIRONMENTAL_CLONE_OPB56_GROUP 43 seqs 2.15.12.001 OTU 2 seqs prokMSA_id:002654 AF027011 clone OPS77. prokMSA_id:046550 AF445702 green sulfur clone SM1H02 2.15.12.002 OTU 1 seq prokMSA_id:002652 AF050546 clone WCHA1-94. 2.15.12.003 OTU 2 seqs prokMSA_id:002651 AF027009 clone OPB56. prokMSA_id:049957 AF446340 FL13D02 2.15.12.004 OTU 1 seq prokMSA_id:016432 AF445646 CFB/Green sulfur group clone SM1A03 2.15.12.005 OTU 1 seq prokMSA_id:025315 AF234699 sludge A12b 2.15.12.006 OTU 1 seq prokMSA_id:058509 AB072720 clone:pHAuB-L 2.15.12.007 OTU 1 seq prokMSA_id:036507 AJ296575 GR-296.II.11 clone GR-296.II.11 2.15.12.008 OTU 2 seqs prokMSA_id:041587 AF445709 clone SM2A12 prokMSA_id:047830 AF445728 clone SM2F06 2.15.12.009 OTU 1 seq prokMSA_id:041844 AF234130 #0319-6E22 2.15.12.010 OTU 1 seq prokMSA_id:057444 AJ441242 CFB group clone P. palm A 12 2.15.12.011 OTU 1 seq prokMSA_id:049950 AF402977 CFB/Green sulfur group clone 2.15.12.012 OTU 1 seq prokMSA_id:066901 AJ306807 clone SHA-83 2.15.12.013 OTU 1 seq prokMSA_id:076963 AJ519406 Chlorobi clone JG37-AG-84 2.15.12.014 OTU 1 seq prokMSA_id:081167 AY218625 clone KD4-114 2.15.12.015 OTU 1 seq prokMSA_id:083562 AY221073 clone CCM9b 2.15.12.016 OTU 1 seq prokMSA_id:087697 AY293505 clone FL08F12 2.15.12.017 OTU 1 seq prokMSA_id:090050 AY297971 clone TA55_Ba_21 2.15.12.018 OTU 1 seq prokMSA_id:092784 AY354182 clone pIR3BB01 2.15.12.999 poor quality 22 seqs prokMSA_id:064037 AB087333 clone:F22 prokMSA_id:002653 AF027010 clone OPS133B. prokMSA_id:002655 AF027012 clone OPT9. prokMSA_id:071228 AF097828 clone 4955 prokMSA_id:026814 AF352539 clone CS19 prokMSA_id:032145 AF428688 clone CRP99-34 prokMSA_id:034023 AF428970 clone CR99-35-12 prokMSA_id:036459 AF428998 clone CR99-35-40 prokMSA_id:028999 AF429025 clone CR99-35-67 prokMSA_id:019340 AF429087 clone CR99-7-53 prokMSA_id:044748 AF429110 clone CR99-7-76 prokMSA_id:022150 AF446339 FL08F09 prokMSA_id:048954 AF473980 CFB group 34-68 prokMSA_id:058804 AF540044 Bacteroidetes DGGE gel band ESR BR 9 prokMSA_id:058799 AF540052 DGGE gel band ESR BR 17 prokMSA_id:040222 AJ296622 GR-296.II.1 clone GR-296.II.1 prokMSA_id:051289 AJ296623 GR-296.II.4 clone GR-296.II.4 prokMSA_id:066665 AY090125 clone IAFDn30 prokMSA_id:066667 AY090126 clone IAFDn69 prokMSA_id:091658 AY340851 isolate DGGE fragment SR_FBR_E11 prokMSA_id:093142 AY352452 Bacteroidetes clone NEVC4 prokMSA_id:002656 X89318 clone 4511. 2.16 GREEN_SULFUR_BACTERIA 180 seqs 2.16.1 ENVIRONMENTAL_CLONE_WCHB1-02_GROUP 16 seqs 2.16.1.001 OTU 6 seqs prokMSA_id:002659 AF027049 clone OPS107. prokMSA_id:002661 AF027050 clone OPB60. prokMSA_id:002663 AF027053 clone OPS148. prokMSA_id:002664 AF027054 clone OPS163. prokMSA_id:036070 AF255600 SRI-280 prokMSA_id:091613 AY340822 clone SR_FBR_E18 2.16.1.002 OTU 1 seq prokMSA_id:002660 AF050594 clone WCHB1-03. 2.16.1.003 OTU 1 seq prokMSA_id:002657 AF050593 clone WCHB1-02. 2.16.1.004 OTU 1 seq prokMSA_id:062668 AF507893 low G+C Gram-positive clone ML635J-28 2.16.1.005 OTU 1 seq prokMSA_id:071654 AF419685 CS_B038 2.16.1.006 OTU 1 seq prokMSA_id:088612 AY297962 clone TA55_Ba_2 2.16.1.007 OTU 1 seq prokMSA_id:090201 AY297961 clone TA55_Ba_1 2.16.1.999 poor quality 4 seqs prokMSA_id:002662 AF027051 clone OPS51. prokMSA_id:002665 AF027055 clone OPT69. prokMSA_id:057018 AJ518540 clone Qui4P1-45 prokMSA_id:002658 X91460 AEspoe hard rock 10-626m below ground surface clone A37t. 2.16.2 ENVIRONMENTAL_CLONE_OPI-6_GROUP 10 seqs 2.16.2.001 OTU 3 seqs prokMSA_id:074839 AF445663 green sulfur clone SM1C06 prokMSA_id:038651 AF445706 green sulfur clone SM2A03 prokMSA_id:088021 AY293405 Chlorobi clone SM2B09 2.16.2.999 poor quality 7 seqs prokMSA_id:028159 AF446262 firmicute FL14A08 prokMSA_id:026622 AF446337 FL07B05 prokMSA_id:048057 AF446338 FL07F06 prokMSA_id:080027 AY193291 clone O1aB8 prokMSA_id:002668 L04705 Octopus Spring microbial mat from Yellowstone NP clone OSIII-9. prokMSA_id:002666 L22046 clone OPI-6. prokMSA_id:002667 X52548 Octopus Spring microbial mat from Yellowstone NP clone E. 2.16.3 CHLOROBIUM_GROUP 154 seqs 2.16.3.003 OTU 1 seq prokMSA_id:002680 AF170103 Chloroherpeton thalassium. 2.16.3.004 OTU 4 seqs prokMSA_id:002679 AF142932 clone PENDANT-20. prokMSA_id:002678 AF142933 clone PENDANT-21. prokMSA_id:052206 AF424370 green sulfur MERTZ_2CM_278 prokMSA_id:091898 AY344403 clone K2-30-37 2.16.3.005 OTU 1 seq prokMSA_id:002677 AJ009458 clone SJA-28. 2.16.3.009 OTU 12 seqs prokMSA_id:027603 AF356020 clone S29 prokMSA_id:060379 AF513460 Chlorobiaceae LA53 prokMSA_id:063920 AJ290833 Chlorobium phaeovibrioides strain DSM 1678 prokMSA_id:063916 AJ290835 Prosthecochloris aestuarii strain 2K prokMSA_id:039385 AJ291826 Prosthecochloris aestuarii strain CHP 3401 prokMSA_id:019433 AJ291827 Chlorobium vibrioforme strain CHP 3402 prokMSA_id:040271 AJ291828 Pelodictyon phaeum strain CIB 2401 prokMSA_id:091506 AY344404 clone K2-4-2 prokMSA_id:091352 AY344405 clone L9-71 prokMSA_id:094965 AY371183 clone L9_Loihi prokMSA_id:002674 M62791 Chlorobium vibrioforme str. 6030 DSM 260 . prokMSA_id:002675 Y07837 Prosthecochloris aestuarii str. SK 413 DSM 271 . 2.16.3.014 OTU 5 seqs prokMSA_id:048102 AF445651 green sulfur clone SM1B01 prokMSA_id:028620 AF445652 green sulfur clone SM1B02 prokMSA_id:019434 AF445653 green sulfur clone SM1B03 prokMSA_id:034775 AF445662 green sulfur clone SM1C05 prokMSA_id:039737 AF445732 green sulfur clone SM2F10 2.16.3.015 OTU 1 seq prokMSA_id:021271 AY038426 green sulfur clone CD5B9 2.16.3.016 OTU 1 seq prokMSA_id:030516 AF445657 clone SM1B09 2.16.3.017 OTU 10 seqs prokMSA_id:067302 AF495384 clone F10.10 prokMSA_id:067301 AF495385 clone F10.14 prokMSA_id:067296 AF495391 clone F10.21 prokMSA_id:067279 AF495409 clone F10.6 prokMSA_id:067278 AF495410 clone F10.7 prokMSA_id:067276 AF495411 clone F10.9 prokMSA_id:067266 AF495422 clone F13.21 prokMSA_id:067261 AF495427 clone F13.30 prokMSA_id:056485 AF495446 clone F13.9 prokMSA_id:067235 AF495452 clone T17 2.16.3.018 OTU 1 seq prokMSA_id:040418 AJ301570 green sulfur GR-296.II.73 2.16.3.019 OTU 1 seq prokMSA_id:040972 AJ229184 from anoxic bulk soil clone BSV19 2.16.3.020 OTU 1 seq prokMSA_id:043107 AF345919 green sulfur 2.16.3.021 OTU 1 seq prokMSA_id:043426 AB011352 clone: TUG24 2.16.3.022 OTU 1 seq prokMSA_id:051829 AF314426 PHOS-HC15 2.16.3.023 OTU 1 seq prokMSA_id:051942 AF445704 clone SM1H06 2.16.3.024 OTU 1 seq prokMSA_id:060814 AY118152 Chlorobi clone Cart-N3 2.16.3.025 OTU 1 seq prokMSA_id:060815 AY118151 Chlorobi clone Cart-N2 2.16.3.026 OTU 1 seq prokMSA_id:062569 AJ504563 isolate P2CN14 2.16.3.027 OTU 1 seq prokMSA_id:065545 AY095422 yard-trimming-compost clone S-57 2.16.3.028 OTU 2 seqs prokMSA_id:072373 AJ295649 KF-JG30-B11 prokMSA_id:078962 AJ536877 clone JG30a-KF-39 2.16.3.029 OTU 1 seq prokMSA_id:075537 AJ519407 Chlorobi clone JG37-AG-110 2.16.3.030 OTU 1 seq prokMSA_id:077325 AF482436 clone R2b21 2.16.3.031 OTU 1 seq prokMSA_id:085337 AY231337 clone ER2_12 2.16.3.032 OTU 1 seq prokMSA_id:086081 AY239569 clone CARB_ER2_10 2.16.3.034 OTU 21 seqs prokMSA_id:069274 AB054671 Chlorobium limicola strain:M1 prokMSA_id:064302 AE012793 Chlorobium tepidum TLS section 14 of 194 of the complete genome prokMSA_id:002696 AF142942 Pelodictyon PENDANT-30. prokMSA_id:073247 AJ290824 Chlorobium limicola strain DSM246 prokMSA_id:063746 AJ290825 Chlorobium limicola f. thiosulfatophilum strain 1430 prokMSA_id:073772 AJ290826 Chlorobium limicola f. thiosulfatophilum strain 1630 prokMSA_id:063925 AJ290828 Chlorobium vibrioforme strain DSM 261 prokMSA_id:063878 AJ290829 Chlorobium vibrioforme f. thiosulfatophilum strain DSM 265 prokMSA_id:071554 AJ290830 Chlorobium vibrioforme f. thiosulfatophilum strain NCIB 8346 prokMSA_id:063922 AJ290831 Chlorobium phaeobacteroides strain DSM 1677 prokMSA_id:063921 AJ290832 Chlorobium phaeobacteroides strain DSM 1855 prokMSA_id:063917 AJ290834 Chlorobium phaeovibrioides strain DSM 270 prokMSA_id:085316 AY239565 clone CARB_ER1_22 prokMSA_id:089005 AY327195 clone ZB22 prokMSA_id:089277 AY327196 clone ZB23 prokMSA_id:089909 AY327197 clone ZB24 prokMSA_id:002676 M31769 Chlorobium limicola str. 8327. prokMSA_id:002692 Y08102 Chlorobium limicola str. 6230. prokMSA_id:002673 Y08105 Chlorobium phaeovibrioides str. 2631. prokMSA_id:002670 Y08108 Pelodictyon phaeoclathratiforme str. BU-1. prokMSA_id:018641 Y18253 Chlorobium ferrooxidans 2.16.3.035 OTU 1 seq prokMSA_id:091225 AY340835 clone SR_FBR_L7 2.16.3.999 poor quality 81 seqs prokMSA_id:025404 AB011316 clone: MUG24 prokMSA_id:064050 AB087319 clone:CF48 prokMSA_id:085702 AB096627 clone: SUIYO-E14 prokMSA_id:048179 AF104275 81 prokMSA_id:002672 AF107326 str. LCK-32. prokMSA_id:069999 AF124657 Px2-DGGE band b prokMSA_id:048071 AF245336 SA21 prokMSA_id:052803 AF298531 Chlorobium limicola isolate Z0 prokMSA_id:031790 AF298532 Chlorobium limicola isolate S1 prokMSA_id:042205 AF298533 Chlorobium limicola f. thiosulfatophilum prokMSA_id:029698 AF298534 Chlorobium phaeobacteroides prokMSA_id:033465 AF298535 Chlorobium limicola isolate Z7 prokMSA_id:029779 AF298536 Chlorobium limicola isolate S8 prokMSA_id:046310 AF298537 Chlorobium limicola isolate S8 prokMSA_id:024745 AF446276 green sulfur FL10G07 prokMSA_id:019647 AF446277 green sulfur FL03E05 prokMSA_id:021843 AF446278 green sulfur FL03C09 prokMSA_id:022461 AF446279 green sulfur FL02D09 prokMSA_id:069735 AF544872 Chlorobi clone D1-8 prokMSA_id:072781 AF544880 Chlorobi clone D1-31 prokMSA_id:002697 AJ006182 chemocline GSB5 prokMSA_id:002698 AJ006183 chemocline GSB6 prokMSA_id:002699 AJ006184 chemocline GSB7 prokMSA_id:035417 AJ225349 species ; clone 40 prokMSA_id:074717 AJ239993 green sulfur strain DGGE band CIBAC-3 prokMSA_id:028682 AJ240010 green sulfur strain DGGE band VIBAC-6 prokMSA_id:041934 AJ272090 epibiont of 'Chlorochromatium aggregatum' from Lake Dagow prokMSA_id:016435 AJ272091 epibiont of 'Chlorochromatium aggregatum' from Lake Echo prokMSA_id:038034 AJ272092 epibiont of 'Chlorochromatium glebulum' from Lake Echo prokMSA_id:022438 AJ272093 epibiont of 'Chlorochromatium magnum' from Lake Echo prokMSA_id:030125 AJ272094 epibiont of 'Chlorochromatium magnum' from Lake Dagow prokMSA_id:074116 AJ290827 Chlorobium limicola f. thiosulfatophilum strain 9330 prokMSA_id:073966 AJ296584 DGGE band PSBAC-4 prokMSA_id:052727 AJ296585 DGGE band PSBAC-5 prokMSA_id:074213 AJ299414 Chlorobium limicola strain UdG_6037 prokMSA_id:024080 AJ421165 clone C7-K20 prokMSA_id:057001 AJ518565 clone Qui4P1-95 prokMSA_id:092534 AJ580957 Chlorobiaceae clone SI_01 prokMSA_id:092832 AJ580958 Chlorobiaceae clone SI_02 prokMSA_id:093140 AJ580959 Chlorobiaceae clone SI_03 prokMSA_id:092448 AJ580960 Chlorobiaceae clone SI_04 prokMSA_id:092605 AJ580961 Chlorobiaceae clone SI_05 prokMSA_id:092775 AJ580962 Chlorobiaceae clone SI_06 prokMSA_id:092187 AJ580963 Chlorobiaceae clone SI_07 prokMSA_id:092339 AJ580964 Chlorobiaceae clone SI_08 prokMSA_id:020926 AY038425 green sulfur clone CD5A5 prokMSA_id:044160 AY038478 green sulfur clone CD4H2 prokMSA_id:088594 AY247957 epibiont PrDBd7 prokMSA_id:088428 AY247958 epibiont PrDBd8 prokMSA_id:089141 AY247959 chemocline GSBBD4fin prokMSA_id:087055 AY293553 Chlorobi clone FL14F05 prokMSA_id:088500 AY323159 Gram-positive clone A133-21 prokMSA_id:089576 AY323160 Gram-positive clone A133-37 prokMSA_id:089884 AY323161 Gram-positive clone A133-64 prokMSA_id:089766 AY323162 Gram-positive clone A133-67 prokMSA_id:090265 AY323163 Gram-positive clone A133-68 prokMSA_id:088060 AY323164 Gram-positive clone A133-96 prokMSA_id:088395 AY327198 clone ZB25 prokMSA_id:091466 AY344406 clone L10-66 prokMSA_id:002685 M58468 Chlorobium tepidum str. NZC. prokMSA_id:002693 X53184 "Clathrochloris sulfurica" str. 1. prokMSA_id:002694 Y08103 Chlorobium vibrioforme str. 6132. prokMSA_id:002671 Y08104 Chlorobium phaeobacteroides str. 2430. prokMSA_id:002669 Y08106 Pelodictyon clathratiforme str. PG. prokMSA_id:002695 Y08107 Pelodictyon luteolum str. 2530. prokMSA_id:070295 Y10640 Chlorobium limicola strain UdG 6002 prokMSA_id:002691 Y10640 Chlorobium limicola DSM 245 . prokMSA_id:002686 Y10641 Chlorobium limicola str. UdG 6038. prokMSA_id:002687 Y10642 Chlorobium limicola str. UdG 6040. prokMSA_id:002688 Y10643 Chlorobium limicola str. UdG 6041. prokMSA_id:002689 Y10644 Chlorobium limicola str. UdG 6042. prokMSA_id:002682 Y10645 Chlorobium limicola strain UdG 6044 prokMSA_id:002690 Y10646 Chlorobium limicola str. UdG 6045. prokMSA_id:002683 Y10647 Chlorobium vibrioforme DSM 263. prokMSA_id:002684 Y10648 Chlorobium vibrioforme strain UdG 6043 prokMSA_id:002681 Y10649 Chlorobium vibrioforme str. UdG 6026. prokMSA_id:002702 Y10650 Chlorobium phaeobacteroides str. UdG 6046. prokMSA_id:002703 Y10651 Chlorobium phaeobacteroides strain UdG 6047 prokMSA_id:002704 Y10652 Chlorobium phaeobacteroides strain UdG 6051 prokMSA_id:002701 Y10653 Chlorobium phaeovibrioides strain UdG 6035 prokMSA_id:002700 Y10654 Chlorobium phaeovibrioides DSM 269. 2.17 ENVIRONMENTAL_CLONE_G37_GROUP 2 seqs 2.17.999 poor quality 2 seqs prokMSA_id:002705 X91280 clone G28. prokMSA_id:002706 X91289 clone G37. 2.18 ENVIRONMENTAL_CLONE_WCHB1-31_GROUP 394 seqs 2.18.001 OTU 1 seq prokMSA_id:002756 U62827 clone RB03. 2.18.002 OTU 1 seq prokMSA_id:002752 AF005749 clone H1.43.f. 2.18.003 OTU 3 seqs prokMSA_id:002750 AF050571 clone WCHB1-50. prokMSA_id:063208 AF524018 clone FW24 prokMSA_id:002751 AJ009460 clone SJA-35. 2.18.004 OTU 1 seq prokMSA_id:002748 AF050575 clone WCHA1-79. 2.18.007 OTU 2 seqs prokMSA_id:084512 AB109439 Anaerobic filamentous KIBI-1 prokMSA_id:002744 AJ009468 clone SJA-58. 2.18.010 OTU 13 seqs prokMSA_id:066091 AB074960 green nonsulfur clone:KB40 prokMSA_id:002740 AF050562 clone WCHB1-05. prokMSA_id:002741 AF050563 clone WCHB1-80. prokMSA_id:002728 AF050564 clone WCHB1-43. prokMSA_id:002742 AF050565 clone WCHB1-44. prokMSA_id:077298 AF524858 K-4b6 prokMSA_id:077570 AF524862 K-5b9 prokMSA_id:002745 AJ009483 clone SJA-108. prokMSA_id:047263 AJ249100 SHA-24 prokMSA_id:020651 AJ249108 SHA-56 prokMSA_id:056469 AJ278174 SHD-245 prokMSA_id:067832 AY082474 Chloroflexi clone 44a-U1-11 prokMSA_id:091629 AY340840 clone SR_FBR_L52 2.18.011 OTU 7 seqs prokMSA_id:083554 AB092878 clone:ALU36 prokMSA_id:034771 AF323767 clone BA046 complete prokMSA_id:067297 AF495389 clone F10.19 prokMSA_id:002737 AJ009469 clone SJA-61. prokMSA_id:002738 AJ009492 clone SJA-131. prokMSA_id:049666 AJ249111 SHA-53 prokMSA_id:084688 AY239572 clone CARB_ER2_12 2.18.012 OTU 1 seq prokMSA_id:002736 AF050569 clone WCHB1-31. 2.18.013 OTU 1 seq prokMSA_id:002729 AJ009487 clone SJA-116. 2.18.014 OTU 1 seq prokMSA_id:002727 AF173817 clone LB3-100. 2.18.015 OTU 1 seq prokMSA_id:002725 AF029049 clone SB-34. 2.18.016 OTU 1 seq prokMSA_id:002724 AJ009500 clone SJA-170. 2.18.017 OTU 1 seq prokMSA_id:002723 AJ009475 clone SJA-68. 2.18.018 OTU 1 seq prokMSA_id:002722 AF050566 clone WCHB1-62. 2.18.019 OTU 1 seq prokMSA_id:002721 U62857 clone RB41. 2.18.020 OTU 11 seqs prokMSA_id:002709 AF027031 clone OPB12. prokMSA_id:002712 AF027032 clone OPB11. prokMSA_id:002715 AF027035 clone OPS124. prokMSA_id:097505 AY349538 clone JC2701W_11 prokMSA_id:096096 AY349541 clone JC2701W_6 prokMSA_id:095797 AY349561 clone JC4102W_16 prokMSA_id:097647 AY349569 clone JC4102W_11 prokMSA_id:096546 AY349570 clone JC4102W_13 prokMSA_id:095748 AY349589 clone JC4102W_1 prokMSA_id:097826 AY349590 clone JC4102W_3 prokMSA_id:096713 AY349591 clone JC4102W_7 2.18.021 OTU 1 seq prokMSA_id:002711 AF142947 clone PENDANT-36. 2.18.022 OTU 2 seqs prokMSA_id:038185 AF395429 Eub No. 13 prokMSA_id:002710 AJ009480 clone SJA-101. 2.18.023 OTU 2 seqs prokMSA_id:002707 AF050568 clone WCHB1-63. prokMSA_id:084110 AY239545 clone CARB_ESS_14 2.18.024 OTU 1 seq prokMSA_id:017692 AY013651 Banisveld landfill BVB11 2.18.025 OTU 1 seq prokMSA_id:073003 AF524019 clone FW42 2.18.026 OTU 1 seq prokMSA_id:019494 AF407193 clone GIF1 2.18.027 OTU 4 seqs prokMSA_id:067539 AF234682 sludge A11b prokMSA_id:067538 AF234691 sludge H19 prokMSA_id:067537 AF234698 sludge A30 prokMSA_id:067536 AF234710 sludge H1 2.18.028 OTU 4 seqs prokMSA_id:021437 AJ249113 SHA-105 prokMSA_id:066946 AJ306744 clone SHA-27 prokMSA_id:066909 AJ306796 clone SHD-190 prokMSA_id:091696 AY340828 clone SR_FBR_E47 2.18.029 OTU 1 seq prokMSA_id:072140 AF419666 a1b007 2.18.030 OTU 1 seq prokMSA_id:022061 AF234688 sludge H5 2.18.031 OTU 1 seq prokMSA_id:023789 AF352540 clone BH4-63 2.18.032 OTU 1 seq prokMSA_id:023814 AF424382 green nonsulfur MERTZ_2CM_137 2.18.033 OTU 5 seqs prokMSA_id:025099 AJ309576 Chloroflexaceae group clone P2-C09 prokMSA_id:038613 AJ309579 Chloroflexaceae group clone P2-F12 prokMSA_id:073176 AJ309597 Chloroflexaceae group clone DGGE band P6.1 prokMSA_id:024750 AJ309598 Chloroflexaceae group clone DGGE band P6.2 prokMSA_id:070638 AJ309641 Chloroflexaceae group clone P6-B01 2.18.034 OTU 4 seqs prokMSA_id:025243 AF445692 green nonsulfur clone SM1F10 prokMSA_id:080679 AY193114 clone QL2B4 prokMSA_id:080378 AY193181 Chloroflexi clone O1aA21 prokMSA_id:080786 AY193183 Chloroflexi clone O1aA19 2.18.035 OTU 1 seq prokMSA_id:026613 AB067647 Anaerobic filamentous STL-6-O1 2.18.036 OTU 1 seq prokMSA_id:027704 AY037574 soil clone S038 2.18.037 OTU 3 seqs prokMSA_id:040782 AB011337 clone: TUG9 prokMSA_id:030038 AB011338 clone: TUG10 prokMSA_id:044630 AB046413 Anaerobic filamentous UNI-1 2.18.038 OTU 1 seq prokMSA_id:030131 AF445676 clone SM1D10 2.18.039 OTU 1 seq prokMSA_id:030996 AF424384 green nonsulfur MERTZ_2CM_197 2.18.041 OTU 1 seq prokMSA_id:032511 AF254398 UASB_TL14 complete 2.18.042 OTU 1 seq prokMSA_id:033024 AF142935 PENDANT-23 2.18.043 OTU 1 seq prokMSA_id:033506 AF424385 green nonsulfur MERTZ_2CM_217 2.18.044 OTU 1 seq prokMSA_id:034104 AJ249094 SHA-28 2.18.045 OTU 1 seq prokMSA_id:071233 AF419669 a2b029 2.18.046 OTU 1 seq prokMSA_id:034880 AF423186 Toluene-degrading methanogenic consortium Eub 6 2.18.047 OTU 2 seqs prokMSA_id:035411 AF234705 sludge H8 prokMSA_id:044185 AF234718 sludge S9 2.18.048 OTU 2 seqs prokMSA_id:046995 AJ296572 GR-296.II.57 clone GR-296.II.57 prokMSA_id:035687 AJ296573 GR/GS-296.II.271 clone GR/GS-296.II.271 2.18.049 OTU 1 seq prokMSA_id:035908 AJ318152 clone BIjii12 2.18.050 OTU 1 seq prokMSA_id:038560 AF419668 a1b002 2.18.052 OTU 3 seqs prokMSA_id:002743 AF050567 clone WCHA1-69. prokMSA_id:038904 AF275920 AA25 prokMSA_id:073947 AY082460 Chloroflexi clone 44a-B1-15 2.18.053 OTU 1 seq prokMSA_id:040169 AJ244807 Gram-positive SOGA31 2.18.054 OTU 1 seq prokMSA_id:040597 AJ387902 C2-12 clone C2-12 2.18.055 OTU 1 seq prokMSA_id:041206 AF424395 green nonsulfur MERTZ_21CM_156 2.18.057 OTU 1 seq prokMSA_id:044686 AF234686 sludge A4b 2.18.059 OTU 4 seqs prokMSA_id:045237 AF142803 ACE-28 prokMSA_id:002746 AF142815 clone ACE-40. prokMSA_id:069761 AF419689 C1_B004 prokMSA_id:023344 AF424402 green nonsulfur MERTZ_21CM_337 2.18.060 OTU 1 seq prokMSA_id:045276 AF229790 TA17 2.18.061 OTU 1 seq prokMSA_id:045285 AF275927 AB13 2.18.062 OTU 2 seqs prokMSA_id:060582 AF407718 clone B25 prokMSA_id:047497 AF445738 clone SM2G06 2.18.063 OTU 1 seq prokMSA_id:057443 AJ441247 green non-sulfur clone P. palm A 17 2.18.064 OTU 1 seq prokMSA_id:051584 AF391972 Thermal soil YNP1 2.18.065 OTU 1 seq prokMSA_id:055534 AJ306746 clone SHA-36 2.18.066 OTU 1 seq prokMSA_id:052036 AF234124 #0319-6A14 2.18.067 OTU 1 seq prokMSA_id:052316 AB064703 clone:NK231 2.18.068 OTU 1 seq prokMSA_id:053925 AF234733 sludge S14 2.18.069 OTU 1 seq prokMSA_id:056685 AJ306795 clone SHD-157 2.18.070 OTU 1 seq prokMSA_id:060170 AJ347042 clone TK32 2.18.071 OTU 1 seq prokMSA_id:060174 AJ347035 clone TK16 2.18.072 OTU 1 seq prokMSA_id:062031 AF523321 clone P4-55 2.18.073 OTU 1 seq prokMSA_id:062480 AF513960 Chloroflexi clone LAS-B16N 2.18.074 OTU 1 seq prokMSA_id:062549 AJ504586 isolate P2CN39 2.18.075 OTU 1 seq prokMSA_id:063209 AF524017 clone FW7 2.18.076 OTU 1 seq prokMSA_id:063210 AF524016 clone FW98 2.18.077 OTU 2 seqs prokMSA_id:064880 AJ412671 clone 31 prokMSA_id:063984 AJ412677 clone 131 2.18.078 OTU 1 seq prokMSA_id:065433 AF513086 clone 11 2.18.079 OTU 1 seq prokMSA_id:065453 AY102332 clone a13139 2.18.080 OTU 1 seq prokMSA_id:065475 AJ278175 SHD-254 clone SHD-254 2.18.084 OTU 3 seqs prokMSA_id:031908 AJ249112 SHA-300 prokMSA_id:065478 AJ278171 SHD-238 prokMSA_id:065477 AJ278172 SHD-43 2.18.085 OTU 1 seq prokMSA_id:065479 AJ278169 SHD-235 2.18.086 OTU 1 seq prokMSA_id:065692 AF507691 soil clone S041 2.18.087 OTU 2 seqs prokMSA_id:065693 AF507690 soil clone C043 prokMSA_id:076756 AJ532729 clone JG34-KF-221 2.18.088 OTU 1 seq prokMSA_id:066905 AJ306801 clone SHD-262 2.18.089 OTU 1 seq prokMSA_id:066906 AJ306800 clone SHD-255 2.18.090 OTU 1 seq prokMSA_id:066907 AJ306798 clone SHD-231 2.18.091 OTU 1 seq prokMSA_id:066910 AJ306794 clone SHD-100 2.18.093 OTU 4 seqs prokMSA_id:065476 AJ278173 SHD-299 prokMSA_id:066911 AJ306793 clone SHD-14 prokMSA_id:042071 AJ387901 C1-28 clone C1-28 prokMSA_id:083940 AY231345 clone ER2_20 2.18.094 OTU 1 seq prokMSA_id:066944 AJ306749 clone SHA-147 2.18.095 OTU 1 seq prokMSA_id:066945 AJ306748 clone SHA-135 2.18.096 OTU 1 seq prokMSA_id:066947 AJ306743 clone SHA-26 2.18.097 OTU 1 seq prokMSA_id:066949 AJ306740 clone SHA-2 2.18.098 OTU 1 seq prokMSA_id:067028 AJ306799 clone SHD-249 2.18.099 OTU 1 seq prokMSA_id:067038 AJ306741 clone SHA-8 2.18.100 OTU 1 seq prokMSA_id:067245 AF495443 clone F13.53 2.18.101 OTU 1 seq prokMSA_id:070228 AF419665 a2b046 2.18.102 OTU 1 seq prokMSA_id:071617 X84576 clone SBR2037 2.18.103 OTU 1 seq prokMSA_id:071875 AF507692 soil clone S0208 2.18.104 OTU 1 seq prokMSA_id:071882 AF419699 C1_B046 2.18.105 OTU 1 seq prokMSA_id:072094 AF419667 a2b022 2.18.106 OTU 1 seq prokMSA_id:072208 AF419695 C1_B034 2.18.107 OTU 1 seq prokMSA_id:073779 AJ309580 Chloroflexaceae group clone P2-G12 2.18.108 OTU 1 seq prokMSA_id:075761 AJ534639 clone JG36-TzT-90 2.18.109 OTU 1 seq prokMSA_id:075928 AJ519644 Chlorobi clone Sh765B-AG-22 2.18.110 OTU 1 seq prokMSA_id:077793 AY171361 clone s2 2.18.111 OTU 1 seq prokMSA_id:077976 AY171335 clone s53 2.18.112 OTU 1 seq prokMSA_id:078263 AY171322 clone s71 2.18.113 OTU 1 seq prokMSA_id:078467 AJ536876 clone JG30a-KF-32 2.18.114 OTU 1 seq prokMSA_id:079777 AB094875 clone:OHKB6.51 2.18.115 OTU 1 seq prokMSA_id:080115 AY193182 clone O1aA2 2.18.116 OTU 2 seqs prokMSA_id:080452 AY193165 Chloroflexi clone BMS93 prokMSA_id:081557 AY216458 clone KM87 2.18.117 OTU 1 seq prokMSA_id:080913 AY192283 candidate division SAM clone S2-9D 2.18.118 OTU 1 seq prokMSA_id:081161 AY214200 clone ZZ14AC19 2.18.119 OTU 1 seq prokMSA_id:082645 AY214826 Bacteroidetes clone BB-2-F4F 2.18.120 OTU 1 seq prokMSA_id:083146 AY239535 clone CARB_ESS_4 2.18.121 OTU 1 seq prokMSA_id:083666 AB109438 Anaerobic filamentous YMTK-2 2.18.122 OTU 1 seq prokMSA_id:083732 AY239578 clone CARB_ER2_5 2.18.123 OTU 1 seq prokMSA_id:083772 AJ495628 isolate SA-29 2.18.124 OTU 1 seq prokMSA_id:083926 AY221035 clone CCD21 2.18.125 OTU 2 seqs prokMSA_id:085574 AY239536 clone CARB_ESS_5 prokMSA_id:084241 AY239543 clone CARB_ESS_12 2.18.126 OTU 1 seq prokMSA_id:084389 AY214616 candidate division OP10 clone SL2-1-F8 2.18.127 OTU 1 seq prokMSA_id:085265 AB109437 Anaerobic filamentous IMO-1 2.18.128 OTU 1 seq prokMSA_id:085629 AY239539 clone CARB_ESS_8 2.18.129 OTU 1 seq prokMSA_id:085738 AY280659 clone G4-21 2.18.130 OTU 1 seq prokMSA_id:085757 AY231319 clone ER1_19 2.18.131 OTU 1 seq prokMSA_id:085788 AY214832 Bacteroidetes clone BB-2-D9F 2.18.132 OTU 1 seq prokMSA_id:085957 AY239580 clone CARB_ER2_3 2.18.133 OTU 1 seq prokMSA_id:086151 AY239574 clone CARB_ER2_9 2.18.134 OTU 1 seq prokMSA_id:088259 AY327218 clone ZB69 2.18.135 OTU 3 seqs prokMSA_id:088752 AY297975 clone TA55_Ba_60 prokMSA_id:095590 AY349578 clone JC2702W_1 prokMSA_id:095699 AY349579 clone JC2702W_4 2.18.136 OTU 1 seq prokMSA_id:089327 AB112774 Filamentous symbiotic of Methylobacterium sp. strain:TFF 2.18.137 OTU 1 seq prokMSA_id:090476 AJ577123 Chloroflexales clone 199 2.18.138 OTU 1 seq prokMSA_id:090530 AY221611 gamma clone HS9-50 2.18.139 OTU 1 seq prokMSA_id:090568 AY221607 soil clone HN4-55 2.18.140 OTU 1 seq prokMSA_id:091842 AY331414 Chloroflexi genomosp. P1 clone P2PB_23 2.18.141 OTU 1 seq prokMSA_id:097711 AY211661 Chloroflexi clone GoM GC185 523E 2.18.999 poor quality 198 seqs prokMSA_id:048833 AB011298 clone: MUG6 prokMSA_id:028625 AB011299 clone: MUG7 prokMSA_id:016811 AB011301 clone: MUG9 prokMSA_id:050113 AB011334 clone: TUG6 prokMSA_id:045676 AB011336 clone: TUG8 prokMSA_id:026960 AB075781 prokMSA_id:086290 AB109405 Chloroflexi clone:AMG-1 prokMSA_id:083990 AB109406 Chloroflexi clone:AMG-2 prokMSA_id:083242 AB109408 Chloroflexi clone:AMG-4 prokMSA_id:082534 AB109409 Chloroflexi clone:AMG-5 prokMSA_id:084219 AB109410 Chloroflexi clone:AMG-6 prokMSA_id:084351 AB109411 Chloroflexi clone:AMG-7 prokMSA_id:085121 AB109412 Chloroflexi clone:BMG-1 prokMSA_id:082950 AB109413 Chloroflexi clone:BMG-2 prokMSA_id:082756 AB109414 Chloroflexi clone:BMG-3 prokMSA_id:082689 AB109415 Chloroflexi clone:BMG-4 prokMSA_id:085721 AB109417 Chloroflexi clone:CMG-1 prokMSA_id:084488 AB109418 Chloroflexi clone:CMG-2 prokMSA_id:086182 AB109420 Chloroflexi clone:CMG-4 prokMSA_id:085543 AB109421 Chloroflexi clone:CMG-5 prokMSA_id:083952 AB109422 Chloroflexi clone:CMG-6 prokMSA_id:082943 AB109423 Chloroflexi clone:CMG-7 prokMSA_id:085447 AB109424 Chloroflexi clone:ATG-1 prokMSA_id:085293 AB109425 Chloroflexi clone:ATG-2 prokMSA_id:083076 AB109426 Chloroflexi clone:ATG-3 prokMSA_id:083304 AB109427 Chloroflexi clone:ATG-4 prokMSA_id:084050 AB109428 Chloroflexi clone:ATG-5 prokMSA_id:085487 AB109429 Chloroflexi clone:ATG-6 prokMSA_id:084328 AB109430 Chloroflexi clone:ATG-7 prokMSA_id:085762 AB109431 Chloroflexi clone:STG-1 prokMSA_id:085624 AB109433 Chloroflexi clone:STG-3 prokMSA_id:084967 AB109435 Chloroflexi clone:STG-5 prokMSA_id:085115 AB109436 Chloroflexi clone:STG-6 prokMSA_id:022103 AF010055 prokMSA_id:002713 AF027033 clone OPS8B. prokMSA_id:002714 AF027034 clone OPS69A. prokMSA_id:002718 AF050622 clone WsCH12. prokMSA_id:033352 AF107327 freshwater LCK-36 prokMSA_id:020488 AF107330 freshwater LCK-51 prokMSA_id:053606 AF128648 soil S0208 prokMSA_id:031124 AF128683 soil S041 prokMSA_id:040207 AF141416 clone CR-PA15 prokMSA_id:035494 AF146259 SCALE-7 prokMSA_id:032011 AF234128 #0319-6C24 prokMSA_id:031752 AF275928 AC05 prokMSA_id:048438 AF298518 Seq1Z0 prokMSA_id:048612 AF298519 Seq2S1 prokMSA_id:052789 AF298527 Seq10S4 prokMSA_id:019480 AF314439 PHOS-HE53 prokMSA_id:033690 AF339852 clone A prokMSA_id:071413 AF345835 green nonsulfur isolate DGGE-band-11 prokMSA_id:042632 AF345838 green nonsulfur isolate DGGE-band-14 prokMSA_id:050470 AF357992 clone LO12.11 prokMSA_id:068310 AF361657 clone MN16BT2-19 prokMSA_id:068269 AF365446 clone BM89MF1BA9 prokMSA_id:055733 AF365826 clone BT60PA10BC3 prokMSA_id:017025 AF367238 clone PNS3 prokMSA_id:019958 AF369709 clone 37 prokMSA_id:037866 AF392751 clone SCB6 prokMSA_id:030698 AF392753 clone CEG1 prokMSA_id:039835 AF392754 clone CEG2 prokMSA_id:048751 AF392756 clone LAE10 prokMSA_id:051650 AF392758 clone LBB1 prokMSA_id:026247 AF392760 clone LEB2 prokMSA_id:049227 AF408647 clone PCEDR137 prokMSA_id:029335 AF408650 clone PCEDR98 prokMSA_id:021638 AF423206 soil clone 1028-2 prokMSA_id:029420 AF423228 soil clone 1422-2 prokMSA_id:067755 AF423371 isolate DGGE band GC4 prokMSA_id:051536 AF428805 clone CR98-5-75 prokMSA_id:037546 AF428976 clone CR99-35-18 prokMSA_id:039209 AF428989 clone CR99-35-31 prokMSA_id:029006 AF429077 clone CR99-7-43 prokMSA_id:019092 AF429104 clone CR99-7-70 prokMSA_id:048210 AF429159 clone CR99-24-49 prokMSA_id:036895 AF432293 green nonsulfur FO-26d-53 prokMSA_id:023760 AF432295 FO-26d-21 prokMSA_id:034333 AF432305 green nonsulfur 0%N-0d-45 prokMSA_id:061243 AF432654 clone NMW3.64WL prokMSA_id:061226 AF432671 clone NMS8.14WL prokMSA_id:075457 AF432711 clone N12.56WL prokMSA_id:046399 AF434973 sponge symbiont JAWS17 prokMSA_id:057546 AF438171 prokMSA_id:068886 AF446251 green nonsulfur FL07A02 prokMSA_id:042063 AF446259 actinomycete FL07A05 prokMSA_id:019359 AF465668 DGGE band YNPRH-B10 prokMSA_id:068825 AF469403 clone 33-PA51B00 prokMSA_id:067239 AF495449 clone T03 prokMSA_id:065728 AF507652 soil clone C1225 prokMSA_id:070336 AF523327 clone P4-2 prokMSA_id:033921 AJ225366 species ; clone 77 prokMSA_id:073734 AJ309593 Chloroflexaceae group clone DGGE band P5.2 prokMSA_id:052373 AJ309634 Chloroflexaceae group clone P5-F05 prokMSA_id:034979 AJ318764 soil clone FHM412 prokMSA_id:056679 AJ347040 clone TK28 prokMSA_id:072480 AJ347043 clone TK35 prokMSA_id:060150 AJ347066 clone TK47 prokMSA_id:060145 AJ347069 clone TK57 prokMSA_id:073536 AJ347077 clone TK69 prokMSA_id:060138 AJ347081 clone TK79 prokMSA_id:069064 AJ387888 B1-12 clone B1-12 prokMSA_id:028582 AJ387890 B1-15 clone B1-15 prokMSA_id:069054 AJ387891 B2-8 clone B2-8 prokMSA_id:061711 AJ416232 clone Sta4-05 prokMSA_id:018166 AJ421215 clone C5-K1 prokMSA_id:033858 AJ421905 clone Alt9-K79 prokMSA_id:070896 AJ437421 clone 1_34_209 prokMSA_id:058343 AJ489414 clone NS-G31 prokMSA_id:058341 AJ489422 clone NS-H8 prokMSA_id:071969 AJ504475 isolate P1CN04 prokMSA_id:062573 AJ504547 isolate P1CN93 prokMSA_id:062546 AJ504578 isolate P2CN29 prokMSA_id:056427 AJ504583 isolate P2CN34 prokMSA_id:062538 AJ504594 isolate P2CN53 prokMSA_id:062529 AJ504602 isolate P2CN63 prokMSA_id:057325 AJ518109 clone Mul01-14 prokMSA_id:057286 AJ518188 clone Mul2P1-15 prokMSA_id:057253 AJ518240 clone Mul2P2-38 prokMSA_id:055529 AJ518241 clone Mul2P2-4 prokMSA_id:057242 AJ518257 clone Mul2P2-72 prokMSA_id:057227 AJ518274 clone Mul2P3-14 prokMSA_id:056727 AJ518365 clone Neu4P1-27 prokMSA_id:057157 AJ518369 clone Neu4P1-37 prokMSA_id:057156 AJ518373 clone Neu4P1-47 prokMSA_id:057118 AJ518414 clone Neu4P3-12 prokMSA_id:057104 AJ518431 clone Neu4P3-34 prokMSA_id:057020 AJ518542 clone Qui4P1-50 prokMSA_id:056989 AJ518579 clone Qui4P2-37 prokMSA_id:056882 AJ518718 clone Sai4P3-35 prokMSA_id:056876 AJ518722 clone Sai4P3-42 prokMSA_id:017004 AY037556 soil clone S002 prokMSA_id:024650 AY037566 soil clone S017 prokMSA_id:016543 AY037568 soil clone S020 prokMSA_id:019230 AY037585 soil clone S052 prokMSA_id:045720 AY037602 soil clone S076 prokMSA_id:029760 AY037609 soil clone S086 prokMSA_id:033273 AY037624 soil clone S109 prokMSA_id:019034 AY037625 soil clone S111 prokMSA_id:045794 AY037626 soil clone S112 prokMSA_id:045199 AY037642 soil clone S137 prokMSA_id:033420 AY046066 clone 1-1 2 prokMSA_id:083374 AY092390 clone BF80 prokMSA_id:085820 AY092391 clone BI31 prokMSA_id:065569 AY095390 yard-trimming-compost clone S-18 prokMSA_id:063028 AY122595 clone MW2-03 prokMSA_id:073193 AY143736 Chloroflexi clone V28 prokMSA_id:071806 AY144267 Flavobacterium sp. LTUCFB01414 prokMSA_id:076218 AY157075 Chloroflexi isolate WC-6 prokMSA_id:076531 AY157090 Chloroflexi isolate WB-6 prokMSA_id:076426 AY157099 Chloroflexi isolate WB-7 prokMSA_id:080287 AY192296 Chloroflexi clone P2-9G prokMSA_id:079675 AY192298 Chloroflexi clone S3-4D prokMSA_id:080634 AY193035 Chloroflexi clone FSA2 prokMSA_id:080698 AY193048 Chloroflexi clone LLB12 prokMSA_id:080340 AY193075 Chloroflexi clone OBPB58 prokMSA_id:079942 AY193096 Chloroflexi clone QL2A15 prokMSA_id:080546 AY193097 Chloroflexi clone QL2A47 prokMSA_id:080177 AY193098 Chloroflexi clone QL2A6 prokMSA_id:083406 AY214610 candidate division OP10 clone SL2-1-G4 prokMSA_id:084865 AY214663 candidate division OP10 clone SL2-1-A8 prokMSA_id:086049 AY214804 Bacteroidetes clone BB-2-F8R prokMSA_id:082731 AY231344 clone ER2_19 prokMSA_id:086941 AY261393 clone RFLP U6 prokMSA_id:086825 AY261399 clone RFLP U19 prokMSA_id:086984 AY261400 clone RFLP U20 prokMSA_id:087673 AY261408 clone RFLP U49 prokMSA_id:087966 AY261410 clone RFLP U55 prokMSA_id:083512 AY263726 Chloroflexi clone FBR12 prokMSA_id:087578 AY283126 Chloroflexi clone NS-20 prokMSA_id:088054 AY283148 Chloroflexi clone NS-59 prokMSA_id:087244 AY293531 clone FL13F03 prokMSA_id:087516 AY293550 clone FL14E11 prokMSA_id:089644 AY304031 soil clone Dpcom70 prokMSA_id:088957 AY315249 rumen clone JRCH46 prokMSA_id:093900 AY361935 clone P8-GEN-27 prokMSA_id:094881 AY369151 clone F-OTU12 prokMSA_id:095348 AY391631 soil clone M15 prokMSA_id:002747 D26207 soil from paddy field clone PAD20. prokMSA_id:002734 D26208 soil from paddy field clone PAD21. prokMSA_id:002753 D26215 soil from paddy field clone PAD28. prokMSA_id:002754 D26216 soil from paddy field clone PAD29. prokMSA_id:002731 D26230 soil from paddy field clone PAD43. prokMSA_id:002755 D26232 soil from paddy field clone PAD45. prokMSA_id:002757 D26233 soil from paddy field clone PAD46. prokMSA_id:002720 D26236 soil from paddy field clone PAD49. prokMSA_id:002719 D26246 soil from paddy field clone PAD59. prokMSA_id:002732 D26249 soil from paddy field clone PAD62. prokMSA_id:002717 D26250 soil from paddy field clone PAD63. prokMSA_id:002735 D26253 soil from paddy field clone PAD66. prokMSA_id:002716 U27851 clone pCON41. prokMSA_id:002733 U68589 clone M1. prokMSA_id:052512 U81745 clone vadinHB28 prokMSA_id:002708 X84472 str. SBR1029. prokMSA_id:002726 X84483 unnamed organism. prokMSA_id:002739 X84498 str. SBR1064. prokMSA_id:002758 X84576 str. SBR2037. prokMSA_id:002730 X91181 clone G9. prokMSA_id:002749 X91283 Bangombe boreholes at depth of 5-105m clone G31. 2.19 ENVIRONMENTAL_CLONE_UN104_GROUP 8 seqs 2.19.999 poor quality 8 seqs prokMSA_id:002763 D63590 clone UN104. prokMSA_id:002760 D63611 clone UN30. prokMSA_id:002759 D63619 clone UN47. prokMSA_id:002766 D63626 clone UN62. prokMSA_id:002762 D63627 clone UN64. prokMSA_id:002761 D63630 clone UN75. prokMSA_id:002765 D63633 clone UN79. prokMSA_id:002764 D63634 clone UN81. 2.20 PLANCTOMYCES_AND_RELATIVES 1270 seqs 2.20.1 PIRELLULA_GROUP 465 seqs 2.20.1.1 PIRELLULA_SCHLESNER_ISOLATES 277 seqs 2.20.1.1.001 OTU 4 seqs prokMSA_id:002802 AJ231174 str. 467. prokMSA_id:002803 AJ231175 str. 683. prokMSA_id:002804 AJ231176 str. 535. prokMSA_id:002806 AJ231178 str. 555. 2.20.1.1.002 OTU 1 seq prokMSA_id:002805 AJ231177 str. 449. 2.20.1.1.003 OTU 1 seq prokMSA_id:002801 X81942 Pirellula sp. str. Schlesner 302. 2.20.1.1.004 OTU 1 seq prokMSA_id:002800 X81943 Pirellula sp. str. Schlesner 382. 2.20.1.1.005 OTU 2 seqs prokMSA_id:002798 AF027057 clone OPB17. prokMSA_id:002799 AF027058 clone OPB6. 2.20.1.1.006 OTU 1 seq prokMSA_id:002797 AF142804 clone ACE-29. 2.20.1.1.007 OTU 1 seq prokMSA_id:002794 U81656 clone vadinBA30. 2.20.1.1.008 OTU 1 seq prokMSA_id:002793 X81945 Pirellula sp. str. Schlesner 139. 2.20.1.1.009 OTU 1 seq prokMSA_id:002792 AF154092 clone BPC061. 2.20.1.1.010 OTU 1 seq prokMSA_id:002788 U70712 clone OM190. 2.20.1.1.011 OTU 1 seq prokMSA_id:002787 X81941 Pirellula sp. str. Schlesner 158. 2.20.1.1.012 OTU 2 seqs prokMSA_id:002786 AJ231173 str. 543. prokMSA_id:002783 X81940 Pirellula sp. str. Schlesner 516. 2.20.1.1.013 OTU 1 seq prokMSA_id:002785 AJ231172 str. 567. 2.20.1.1.014 OTU 1 seq prokMSA_id:002784 AJ231171 str. 337. 2.20.1.1.015 OTU 3 seqs prokMSA_id:002778 AJ231170 str. 610. prokMSA_id:002781 X86392 Pirellula sp. str. HGG/MP1. prokMSA_id:017540 X86394 Pirellula sp. strain PH/CP2 2.20.1.1.016 OTU 2 seqs prokMSA_id:002780 AF029078 Pirellula Pirellula clone 6N14. prokMSA_id:059764 AY133431 clone OB3_73 2.20.1.1.017 OTU 1 seq prokMSA_id:002777 AJ231169 str. 529. 2.20.1.1.018 OTU 3 seqs prokMSA_id:040762 AF453520 Pirellula sp. 797 prokMSA_id:002776 AJ231168 str. 608. prokMSA_id:002771 X81938 Pirellula sp. str. Schlesner 1. 2.20.1.1.019 OTU 1 seq prokMSA_id:002772 AF159641 clone HstpL75. 2.20.1.1.020 OTU 1 seq prokMSA_id:002770 X81944 Pirellula sp. str. Schlesner 384. 2.20.1.1.021 OTU 1 seq prokMSA_id:002768 AF099714 Pirellula AJL5 str. AJL5. 2.20.1.1.022 OTU 1 seq prokMSA_id:002767 X81939 Pirellula sp. str. Schlesner 140. 2.20.1.1.024 OTU 1 seq prokMSA_id:017699 AF424490 planctomycete MERTZ_21CM_189 2.20.1.1.025 OTU 1 seq prokMSA_id:017937 AF328180 clone KS31 2.20.1.1.026 OTU 1 seq prokMSA_id:018704 AJ290182 planctomycete clone DSP25 2.20.1.1.027 OTU 1 seq prokMSA_id:018708 AF424458 planctomycete MERTZ_2CM_25 2.20.1.1.028 OTU 1 seq prokMSA_id:018879 AF271324 planctomycete clone30 2.20.1.1.029 OTU 1 seq prokMSA_id:019319 AF424472 planctomycete MERTZ_2CM_313 2.20.1.1.030 OTU 1 seq prokMSA_id:020894 AJ290184 planctomycete clone DSP26 2.20.1.1.031 OTU 1 seq prokMSA_id:022815 AJ297459 planctomycete Sva0800 2.20.1.1.032 OTU 1 seq prokMSA_id:023198 AJ390470 soil PBS-81 2.20.1.1.033 OTU 1 seq prokMSA_id:025864 AJ290171 planctomycete clone DSP08 2.20.1.1.034 OTU 1 seq prokMSA_id:026033 AF424481 planctomycete MERTZ_21CM_35 2.20.1.1.035 OTU 1 seq prokMSA_id:055358 AF525958 planctomycete clone PLA3 2.20.1.1.036 OTU 1 seq prokMSA_id:029003 AJ290192 planctomycete clone DSP56 2.20.1.1.037 OTU 2 seqs prokMSA_id:071575 AF320962 Lake Michigan sediment LMBA47 prokMSA_id:070458 AH010355 Lake Michigan sediment LMBA47 and genes 2.20.1.1.038 OTU 1 seq prokMSA_id:031565 AF328181 clone KS32 2.20.1.1.039 OTU 9 seqs prokMSA_id:037686 AF314429 PHOS-HE25 prokMSA_id:038354 AJ290175 planctomycete clone DSP10 prokMSA_id:044344 AJ290179 planctomycete clone DSP33 prokMSA_id:032475 AJ290181 planctomycete clone DSP28 prokMSA_id:082784 BX294694 planctomycete clone CY0ARA025D05 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:083819 BX294701 planctomycete clone CY0ARA025E12 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:082636 BX294778 planctomycete clone CY0ARA028A09 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:084158 BX294825 planctomycete clone CY0ARA031A08 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085686 BX294887 planctomycete clone CY0ARA032G05 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.1.1.040 OTU 1 seq prokMSA_id:033252 AJ290186 planctomycete clone DSP36 2.20.1.1.041 OTU 1 seq prokMSA_id:033376 AF234760 sludge A17 2.20.1.1.042 OTU 1 seq prokMSA_id:033379 AF271337 planctomycete clone49 2.20.1.1.044 OTU 6 seqs prokMSA_id:054575 AJ290170 planctomycete clone DSP04 prokMSA_id:033918 AJ290173 planctomycete clone DSP12 prokMSA_id:041687 AJ290174 planctomycete clone DSP19 prokMSA_id:045321 AJ290187 planctomycete clone DSP17 prokMSA_id:071284 AJ290189 planctomycete clone DSP41 prokMSA_id:043981 AJ290194 planctomycete clone DSP23 2.20.1.1.045 OTU 1 seq prokMSA_id:034936 AF424466 planctomycete MERTZ_2CM_236 2.20.1.1.046 OTU 1 seq prokMSA_id:035667 AF423302 soil clone 96-2 2.20.1.1.047 OTU 1 seq prokMSA_id:035748 AJ290190 planctomycete clone DSP48 2.20.1.1.048 OTU 1 seq prokMSA_id:040268 AJ431347 planctomycete isolate ikaite un-c21 2.20.1.1.049 OTU 1 seq prokMSA_id:040888 AF418968 clone HT2F11 2.20.1.1.050 OTU 1 seq prokMSA_id:040976 AF424457 planctomycete MERTZ_2CM_10 2.20.1.1.051 OTU 1 seq prokMSA_id:042704 AF445151 clone Tc94 2.20.1.1.052 OTU 1 seq prokMSA_id:057897 AF525957 planctomycete clone PLA2 2.20.1.1.053 OTU 1 seq prokMSA_id:057895 AF525959 planctomycete clone PLA4 2.20.1.1.054 OTU 1 seq prokMSA_id:057894 AF525962 planctomycete clone PLA7 2.20.1.1.055 OTU 2 seqs prokMSA_id:057893 AF525964 planctomycete clone PLA9 prokMSA_id:056620 AF525969 planctomycete clone PLA14 2.20.1.1.056 OTU 1 seq prokMSA_id:057891 AF525965 planctomycete clone PLA10 2.20.1.1.057 OTU 1 seq prokMSA_id:057884 AF525968 planctomycete clone PLA13 2.20.1.1.058 OTU 1 seq prokMSA_id:043467 AJ290169 planctomycete clone DSP15 2.20.1.1.059 OTU 1 seq prokMSA_id:044216 AJ292685 WD283 clone WD283 2.20.1.1.060 OTU 1 seq prokMSA_id:044654 AJ390464 soil PBS-33 2.20.1.1.061 OTU 1 seq prokMSA_id:045722 AF424201 delta MERTZ_2CM_119 2.20.1.1.062 OTU 1 seq prokMSA_id:071342 AY114326 planctomycete clone LD1-PA40 2.20.1.1.063 OTU 1 seq prokMSA_id:046836 AF424470 planctomycete MERTZ_2CM_307 2.20.1.1.064 OTU 1 seq prokMSA_id:048536 AJ390466 soil PBS-40 2.20.1.1.065 OTU 1 seq prokMSA_id:049023 AF418943 clone HTA2 2.20.1.1.066 OTU 1 seq prokMSA_id:049237 AF445134 clone Tc74 2.20.1.1.067 OTU 1 seq prokMSA_id:052475 AF271335 planctomycete clone46 2.20.1.1.068 OTU 1 seq prokMSA_id:052599 AJ290172 planctomycete clone DSP18 2.20.1.1.069 OTU 1 seq prokMSA_id:056612 AF525956 planctomycete clone PLA1 2.20.1.1.070 OTU 1 seq prokMSA_id:059768 AY133427 clone BB2_107 2.20.1.1.071 OTU 1 seq prokMSA_id:062477 AF513966 planctomycete clone LA4-B39N 2.20.1.1.072 OTU 1 seq prokMSA_id:064416 AY102907 clone BCM3S-27B 2.20.1.1.073 OTU 1 seq prokMSA_id:065654 AF507737 soil clone S168 2.20.1.1.074 OTU 1 seq prokMSA_id:065683 AF507705 soil clone S165 2.20.1.1.075 OTU 1 seq prokMSA_id:066934 AJ306765 clone SHA-6 2.20.1.1.076 OTU 2 seqs prokMSA_id:072455 AF280862 mle1-41 prokMSA_id:098464 AJ536843 clone 37 2.20.1.1.077 OTU 1 seq prokMSA_id:072696 AY082478 planctomycete clone 44a-U1-7 2.20.1.1.078 OTU 1 seq prokMSA_id:073086 AJ390447 soil PBS-II-37 2.20.1.1.079 OTU 1 seq prokMSA_id:075622 AJ534691 planctomycetales clone S15A-MN16 2.20.1.1.080 OTU 1 seq prokMSA_id:075800 AY164368 Planctomycetales clone BLIB-25 2.20.1.1.081 OTU 1 seq prokMSA_id:076287 AY164413 Planctomycetales clone DLIB-60 2.20.1.1.082 OTU 1 seq prokMSA_id:076312 AY164411 Planctomycetales clone DLIB-52 2.20.1.1.083 OTU 1 seq prokMSA_id:076647 AY147279 clone THM-9 2.20.1.1.084 OTU 1 seq prokMSA_id:076873 AY164442 Planctomycetales clone ULIB-59 2.20.1.1.085 OTU 1 seq prokMSA_id:078054 AB089120 Planctomycetales clone:Rs-D54 2.20.1.1.086 OTU 1 seq prokMSA_id:079100 AY187314 clone csbio160306 2.20.1.1.087 OTU 1 seq prokMSA_id:079230 AY187894 clone H9 2.20.1.1.088 OTU 3 seqs prokMSA_id:080863 AF468237 clone ARKCH2Br2-98 prokMSA_id:080219 AF468238 clone ARKCH2Br2-73 prokMSA_id:079740 AF468263 clone ARKDMS-83 2.20.1.1.089 OTU 1 seq prokMSA_id:079990 AF468239 clone ARKCH2Br2-76 2.20.1.1.091 OTU 9 seqs prokMSA_id:084860 BX294676 planctomycete clone CY0ARA025A03 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085305 BX294713 planctomycete clone CY0ARA025H06 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:082890 BX294725 planctomycete clone CY0ARA026D09 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084337 BX294745 planctomycete clone CY0ARA027A12 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:082778 BX294826 planctomycete clone CY0ARA031A10 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:083962 BX294827 planctomycete clone CY0ARA031A12 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:082921 BX294840 planctomycete clone CY0ARA031D07 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085841 BX294859 planctomycete clone CY0ARA031H04 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:083117 BX294866 planctomycete clone CY0ARA032A12 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.1.1.092 OTU 5 seqs prokMSA_id:086238 BX294711 planctomycete clone CY0ARA025H03 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:083873 BX294739 planctomycete clone CY0ARA026H07 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085229 BX294762 planctomycete clone CY0ARA027D11 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:085571 BX294863 planctomycete clone CY0ARA032A03 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:082851 BX294898 planctomycete clone CY0ARA055C03 of environmental sample of planctomycete obtained from anaerobic digester from France Evry municipal wastewater treatment plant 2.20.1.1.093 OTU 2 seqs prokMSA_id:082914 BX294700 planctomycete clone CY0ARA025E11 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084402 BX294892 planctomycete clone CY0ARA032H05 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.1.1.096 OTU 8 seqs prokMSA_id:086000 BX294731 planctomycete clone CY0ARA026F10 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:082615 BX294740 planctomycete clone CY0ARA026H10 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084243 BX294759 planctomycete clone CY0ARA027D05 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:083701 BX294760 planctomycete clone CY0ARA027D06 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:082963 BX294771 planctomycete clone CY0ARA027G12 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:085058 BX294810 planctomycete clone CY0ARA028G07 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:083889 BX294895 planctomycete clone CY0ARA032H12 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085268 BX294901 planctomycete clone CY0ARA055E08 of environmental sample of planctomycete obtained from anaerobic digester from France Evry municipal wastewater treatment plant 2.20.1.1.097 OTU 1 seq prokMSA_id:083109 BX294696 planctomycete clone CY0ARA025E01 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.1.1.098 OTU 2 seqs prokMSA_id:083410 BX294686 planctomycete clone CY0ARA025B08 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:083238 BX294820 planctomycete clone CY0ARA030F07 of environmental sample of planctomycete obtained from anaerobic digester from France Evry municipal wastewater treatment plant 2.20.1.1.099 OTU 1 seq prokMSA_id:083336 AY226279 Planctomycetales clone DBBB-109 2.20.1.1.100 OTU 1 seq prokMSA_id:083466 BX294877 planctomycete clone CY0ARA032D06 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.1.1.101 OTU 2 seqs prokMSA_id:083520 BX294705 planctomycete clone CY0ARA025F10 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:086383 BX294785 planctomycete clone CY0ARA028B09 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.1.1.102 OTU 1 seq prokMSA_id:083892 AY226234 planctomycete clone BBBB-110 2.20.1.1.103 OTU 1 seq prokMSA_id:084073 BX294889 planctomycete clone CY0ARA032G08 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.1.1.104 OTU 3 seqs prokMSA_id:085856 BX294714 planctomycete clone CY0ARA025H08 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084128 BX294737 planctomycete clone CY0ARA026G09 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:086524 BX294857 planctomycete clone CY0ARA031H01 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.1.1.105 OTU 1 seq prokMSA_id:084340 AY226296 planctomycete clone DBBB-45 2.20.1.1.107 OTU 4 seqs prokMSA_id:082939 BX294729 planctomycete clone CY0ARA026F01 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:086221 BX294733 planctomycete clone CY0ARA026G04 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084399 BX294822 planctomycete clone CY0ARA031A01 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084674 BX294839 planctomycete clone CY0ARA031D06 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.1.1.108 OTU 1 seq prokMSA_id:084580 BX294794 planctomycete clone CY0ARA028D03 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.1.1.109 OTU 1 seq prokMSA_id:084815 BX294743 planctomycete clone CY0ARA027A06 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.1.1.110 OTU 1 seq prokMSA_id:084862 BX294811 planctomycete clone CY0ARA028G08 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.1.1.111 OTU 1 seq prokMSA_id:085238 AY226298 planctomycete clone DBBB-47 2.20.1.1.112 OTU 1 seq prokMSA_id:085347 AY226258 Planctomycetales clone BBBB-58 2.20.1.1.113 OTU 1 seq prokMSA_id:085523 BX294868 planctomycete clone CY0ARA032B02 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.1.1.114 OTU 1 seq prokMSA_id:085664 AY226299 clone DBBB-49 2.20.1.1.115 OTU 1 seq prokMSA_id:085732 AY221065 clone CCM5b 2.20.1.1.116 OTU 1 seq prokMSA_id:085976 BX294897 planctomycete clone CY0ARA055B12 of environmental sample of planctomycete obtained from anaerobic digester from France Evry municipal wastewater treatment plant 2.20.1.1.117 OTU 1 seq prokMSA_id:085977 AY266449 planctomycete clone A6 2.20.1.1.118 OTU 1 seq prokMSA_id:085995 BX294698 planctomycete clone CY0ARA025E05 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.1.1.119 OTU 1 seq prokMSA_id:086022 AY226311 clone DBBB-73 2.20.1.1.120 OTU 1 seq prokMSA_id:086095 BX294775 planctomycete clone CY0ARA027H11 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.1.1.121 OTU 1 seq prokMSA_id:086265 BX294853 planctomycete clone CY0ARA031G03 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.1.1.122 OTU 1 seq prokMSA_id:086330 AY266448 planctomycete clone B2 2.20.1.1.123 OTU 1 seq prokMSA_id:086334 BX294818 planctomycete clone CY0ARA029G09 of environmental sample of planctomycete obtained from anaerobic digester from France Evry municipal wastewater treatment plant 2.20.1.1.124 OTU 1 seq prokMSA_id:090013 AY327224 clone ZB142 2.20.1.1.125 OTU 1 seq prokMSA_id:090458 AY327223 clone ZB141 2.20.1.1.126 OTU 1 seq prokMSA_id:090514 AY321421 clone L45 2.20.1.1.127 OTU 1 seq prokMSA_id:090527 AY297974 clone TA55_Ba_31 2.20.1.1.128 OTU 1 seq prokMSA_id:091141 AY345510 clone W4A-A33 2.20.1.1.129 OTU 1 seq prokMSA_id:091392 AY344417 clone L5-28 2.20.1.1.130 OTU 1 seq prokMSA_id:091522 AY344413 clone K2-S-5 2.20.1.1.131 OTU 1 seq prokMSA_id:091792 AY344414 clone K2-S-7 2.20.1.1.132 OTU 1 seq prokMSA_id:091893 AY344412 clone K2-30-19 2.20.1.1.133 OTU 1 seq prokMSA_id:094710 AY373419 clone A78 complete 2.20.1.1.999 poor quality 95 seqs prokMSA_id:021684 AB011349 clone: TUG21 prokMSA_id:070324 AB049922 sludge v9-3 prokMSA_id:052342 AF010124 prokMSA_id:002779 AF030772 clone Adriatic74. prokMSA_id:032235 AF093594 Freshwater sediment clone ppC10rna prokMSA_id:021960 AF093596 Freshwater sediment clone ppC1rna prokMSA_id:016490 AF099713 Pirellula sp. AJL4 prokMSA_id:002769 AF099716 Pirellula AJL22 str. AJL22. prokMSA_id:022555 AF099717 Pirellula sp. AJL36 prokMSA_id:051003 AF193570 planctomycete n33d prokMSA_id:030027 AF223262 delta B2M17 prokMSA_id:021850 AF234755 sludge S4 prokMSA_id:048706 AF245344 SA29 prokMSA_id:073695 AF320935 Lake Michigan sediment LMBA16 prokMSA_id:036087 AF332319 clone T26-21 prokMSA_id:046962 AF332336 clone C26-11 prokMSA_id:068247 AF365471 clone BM89MF1BE8 prokMSA_id:068227 AF365496 clone BM89MF5BB12 prokMSA_id:055415 AF365698 clone BT60DS1BD11 prokMSA_id:068016 AF365737 clone BT60DS4BC2 prokMSA_id:067954 AF365817 clone BT60PA10BB10 prokMSA_id:067918 AF365853 clone BT60PA10BF8 prokMSA_id:025768 AF379699 clone SL30 prokMSA_id:021460 AF392778 clone LAA1 prokMSA_id:039905 AF392780 clone LBF8 prokMSA_id:070374 AF419673 a1b031 prokMSA_id:027548 AF424483 planctomycete MERTZ_21CM_49B prokMSA_id:047826 AF424484 planctomycete MERTZ_21CM_54 prokMSA_id:050560 AF424501 planctomycete MERTZ_21CM_363 prokMSA_id:039788 AF428608 clone CRD99-30 prokMSA_id:028953 AF428698 clone CRP99-44 prokMSA_id:023301 AF428699 clone CRP99-45 prokMSA_id:024006 AF428824 clone CR98-24-18 prokMSA_id:047091 AF428834 clone CR98-24-28 prokMSA_id:019763 AF428847 clone CR98-24-41 prokMSA_id:026486 AF428856 clone CR98-24-50 prokMSA_id:041640 AF428862 clone CR98-24-56 prokMSA_id:029219 AF428871 clone CR98-24-65 prokMSA_id:042516 AF428892 clone CR98-35-10 prokMSA_id:029596 AF428942 clone CR98-35-60 prokMSA_id:022597 AF429116 clone CR99-24-06 prokMSA_id:047915 AF429149 clone CR99-24-39 prokMSA_id:021648 AF465674 DGGE band YNPRH-B16 prokMSA_id:080699 AF468236 clone ARKCH2Br2-9 prokMSA_id:048002 AF473941 planctomycete 128-70 prokMSA_id:067287 AF495399 clone F10.38 prokMSA_id:065864 AF507464 soil clone S012 prokMSA_id:065623 AF507777 soil clone S1191 prokMSA_id:065599 AF507799 soil clone S1247 prokMSA_id:061687 AJ416262 clone Sta5-16 prokMSA_id:058338 AJ489430 clone NS-C15 prokMSA_id:055902 AJ489432 clone NS07-08 prokMSA_id:058330 AJ489433 clone NS07-12 prokMSA_id:058329 AJ489434 clone NS07-14 prokMSA_id:058327 AJ489435 clone NS07-32 prokMSA_id:056617 AJ489436 clone NS07-43 prokMSA_id:062588 AJ504531 isolate P1CN73 prokMSA_id:062571 AJ504550 isolate P1CN96 prokMSA_id:057208 AJ518300 clone Mul2P3-79 prokMSA_id:057114 AJ518427 clone Neu4P3-29 prokMSA_id:056898 AJ518692 clone Sai4P1-74 prokMSA_id:056866 AJ518731 clone Sai4P3-54 prokMSA_id:056867 AJ518739 clone Sai4P3-65 prokMSA_id:053926 AY038494 planctomycete clone CD4H6 prokMSA_id:024011 AY038561 planctomycete clone CD4D8 prokMSA_id:033487 AY038579 planctomycete clone CD2D11 prokMSA_id:083787 AY092393 clone BF26 prokMSA_id:062291 AY124427 actinobacterium clone SDa01 prokMSA_id:062289 AY124429 actinobacterium clone SDa03 prokMSA_id:062284 AY124434 actinobacterium clone SDa12 prokMSA_id:062273 AY124446 actinobacterium clone SDc08 prokMSA_id:059763 AY133432 clone OB3_O114 prokMSA_id:077611 AY167665 planctomycete clone PLA15 prokMSA_id:085189 AY221064 clone CCM4b prokMSA_id:082858 AY226266 Planctomycetales clone BBBB-76 prokMSA_id:083310 AY226288 clone DBBB-34 prokMSA_id:086752 AY283129 planctomycete clone NS-02 prokMSA_id:086831 AY283130 planctomycete clone NS-03 prokMSA_id:090581 AY311795 Dpcom96 prokMSA_id:089405 AY311801 Dpcom103 prokMSA_id:091635 AY344443 clone K60-19 prokMSA_id:095049 AY369148 clone F-OTU8 prokMSA_id:098499 AY395113 clone B28R prokMSA_id:002807 D26228 soil from paddy field clone PAD41. prokMSA_id:037183 U81760 clone vadinBE38 prokMSA_id:002782 X86393 Pirellula sp. str. PH/CP1. prokMSA_id:002773 Z77400 unnamed organism. prokMSA_id:002789 Z77410 unnamed organism. prokMSA_id:002790 Z77420 unnamed organism. prokMSA_id:002774 Z77477 unnamed organism. prokMSA_id:002791 Z77479 unnamed organism. prokMSA_id:002795 Z77485 unnamed organism. prokMSA_id:002796 Z77486 unnamed organism. prokMSA_id:051714 Z77557 1-140 C15 prokMSA_id:002775 Z77587 str. 1-700 C36. 2.20.1.2 PIR.STALEYI_SUBGROUP 174 seqs 2.20.1.2.001 OTU 3 seqs prokMSA_id:035238 AF399914 Pirellula staleyi strain ATCC 35122 prokMSA_id:002828 AJ231183 Pirellula staleyi DSM 6068 . prokMSA_id:002826 M34126 Pirellula staleyi ATCC 27377. 2.20.1.2.002 OTU 2 seqs prokMSA_id:002824 AF159642 clone HstpL83. prokMSA_id:016674 AF469406 clone 33-FL67B99 2.20.1.2.003 OTU 1 seq prokMSA_id:002823 X81948 Planctomyces sp. str. Schlesner 670. 2.20.1.2.004 OTU 1 seq prokMSA_id:002821 AJ231182 str. 292. 2.20.1.2.005 OTU 1 seq prokMSA_id:002819 AF159640 clone HstpL64. 2.20.1.2.006 OTU 1 seq prokMSA_id:002820 AF027059 clone OPT49. 2.20.1.2.007 OTU 2 seqs prokMSA_id:083975 BX294830 planctomycete clone CY0ARA031B03 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:002818 X81947 Pirellula sp. str. Schlesner 678. 2.20.1.2.008 OTU 9 seqs prokMSA_id:071672 AF453518 Pirellula sp. Apfist prokMSA_id:071634 AF453519 Pirellula sp. SW16 prokMSA_id:002809 AJ231179 str. 611. prokMSA_id:002810 AJ231180 str. 391. prokMSA_id:002812 X86387 Pirellula sp. ACM 3180. prokMSA_id:002813 X86388 Pirellula sp. ACM 3181. prokMSA_id:002814 X86389 Pirellula sp. str. AGA/C41. prokMSA_id:002816 X86390 Pirellula sp. str. AGA/M41. prokMSA_id:002815 X86391 Pirellula sp. str. AGA/M12. 2.20.1.2.009 OTU 1 seq prokMSA_id:002811 AJ231181 str. 116. 2.20.1.2.010 OTU 1 seq prokMSA_id:002808 X62912 Pirellula marina DSM 3645. 2.20.1.2.011 OTU 2 seqs prokMSA_id:016536 AF424487 planctomycete MERTZ_21CM_143 prokMSA_id:059765 AY133430 clone BB2_148 2.20.1.2.012 OTU 2 seqs prokMSA_id:042468 AF424479 planctomycete MERTZ_21CM_21 prokMSA_id:017181 AF424496 planctomycete MERTZ_21CM_254 2.20.1.2.013 OTU 1 seq prokMSA_id:022360 AF424485 MERTZ_21CM_74 2.20.1.2.014 OTU 1 seq prokMSA_id:022503 AF424503 planctomycete MERTZ_21CM_411 2.20.1.2.015 OTU 1 seq prokMSA_id:022522 AF424480 planctomycete MERTZ_21CM_26 2.20.1.2.016 OTU 1 seq prokMSA_id:022711 AF271338 planctomycete clone50 2.20.1.2.017 OTU 1 seq prokMSA_id:024192 AF259633 planctomycete CtaxPhil-23 2.20.1.2.018 OTU 1 seq prokMSA_id:024219 AF145806 Metal-contaminated soil clone K20-02 2.20.1.2.019 OTU 1 seq prokMSA_id:026957 AF271319 planctomycete clone23 2.20.1.2.020 OTU 2 seqs prokMSA_id:027673 AF234702 sludge A1 prokMSA_id:086701 BX294902 planctomycete clone CY0ARA055H09 of environmental sample of planctomycete obtained from anaerobic digester from France Evry municipal wastewater treatment plant 2.20.1.2.021 OTU 1 seq prokMSA_id:027858 AF145835 Metal-contaminated soil clone K20-38 2.20.1.2.022 OTU 2 seqs prokMSA_id:074142 AF271317 planctomycete clone21 prokMSA_id:028765 AJ252628 Agricultural soil clone SC-I-28 2.20.1.2.023 OTU 1 seq prokMSA_id:070249 AF419698 C1_B039 2.20.1.2.024 OTU 3 seqs prokMSA_id:052554 AJ390474 soil PRR-1A prokMSA_id:049171 AJ390477 soil PRR-6 prokMSA_id:030167 AJ390484 soil PRR-47 2.20.1.2.025 OTU 1 seq prokMSA_id:030401 AF271331 planctomycete clone40 2.20.1.2.026 OTU 1 seq prokMSA_id:031313 AF328183 clone KS35 2.20.1.2.027 OTU 1 seq prokMSA_id:032460 AF271330 planctomycete clone38 2.20.1.2.028 OTU 1 seq prokMSA_id:033540 AF145823 Metal-contaminated soil clone K20-20 2.20.1.2.029 OTU 1 seq prokMSA_id:033863 AF445100 clone Tc32 2.20.1.2.030 OTU 1 seq prokMSA_id:035201 AF271339 planctomycete clone6 2.20.1.2.031 OTU 1 seq prokMSA_id:035477 AF271332 planctomycete clone41 2.20.1.2.032 OTU 4 seqs prokMSA_id:035556 AF234700 sludge A25 prokMSA_id:085090 BX294723 planctomycete clone CY0ARA026C09 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084577 BX294817 planctomycete clone CY0ARA028H09 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:086136 BX294903 planctomycete clone CY0ARA056C02 of environmental sample of planctomycete obtained from anaerobic digester from France Evry municipal wastewater treatment plant 2.20.1.2.033 OTU 1 seq prokMSA_id:036841 AF271326 planctomycete clone33 2.20.1.2.034 OTU 1 seq prokMSA_id:037281 AF422610 clone t040 2.20.1.2.035 OTU 1 seq prokMSA_id:037436 AF195424 Pirellula kpj13f 2.20.1.2.036 OTU 1 seq prokMSA_id:038299 AJ390475 soil PRR-1B 2.20.1.2.037 OTU 1 seq prokMSA_id:038697 AF445137 clone Tc77 2.20.1.2.038 OTU 2 seqs prokMSA_id:038835 AF371925 clone p-1088-a5 prokMSA_id:039471 AF371926 clone p-943-s962-5 2.20.1.2.039 OTU 1 seq prokMSA_id:040276 AF145829 Metal-contaminated soil clone K20-31 2.20.1.2.040 OTU 1 seq prokMSA_id:040535 AF469409 clone CTD29B 2.20.1.2.041 OTU 1 seq prokMSA_id:041254 AF271309 planctomycete clone1 2.20.1.2.042 OTU 2 seqs prokMSA_id:041301 AJ390473 soil PRR-0 prokMSA_id:049674 AJ390479 soil PRR-8 2.20.1.2.043 OTU 1 seq prokMSA_id:057889 AF525966 planctomycete clone PLA11 2.20.1.2.044 OTU 1 seq prokMSA_id:043338 AF424476 planctomycete MERTZ_0CM_317 2.20.1.2.045 OTU 1 seq prokMSA_id:057885 AF525967 planctomycete clone PLA12 2.20.1.2.046 OTU 1 seq prokMSA_id:043734 AB062813 clone:BCf2-25 2.20.1.2.047 OTU 1 seq prokMSA_id:044910 AF234736 sludge A40 2.20.1.2.048 OTU 1 seq prokMSA_id:044989 AF271334 planctomycete clone44 2.20.1.2.049 OTU 2 seqs prokMSA_id:046511 AJ390478 soil PRR-7 prokMSA_id:051628 AJ390483 soil PRR-14 2.20.1.2.050 OTU 1 seq prokMSA_id:046904 AJ390443 soil PBS-II-13 2.20.1.2.051 OTU 1 seq prokMSA_id:047745 AJ390468 soil PBS-72 2.20.1.2.052 OTU 1 seq prokMSA_id:050882 AF234735 sludge A8 2.20.1.2.053 OTU 1 seq prokMSA_id:051502 AF424497 planctomycete MERTZ_21CM_287 2.20.1.2.054 OTU 1 seq prokMSA_id:052010 AF271336 planctomycete clone47 2.20.1.2.055 OTU 1 seq prokMSA_id:059769 AY133429 clone BB2_173 2.20.1.2.056 OTU 1 seq prokMSA_id:062684 AF507874 planctomycete clone ML635J-23 2.20.1.2.057 OTU 1 seq prokMSA_id:063229 AF523997 clone FW123 2.20.1.2.058 OTU 1 seq prokMSA_id:064587 AF467389 planctomycete clone 1560 2.20.1.2.059 OTU 1 seq prokMSA_id:065616 AF507784 soil clone S1216 2.20.1.2.060 OTU 1 seq prokMSA_id:066932 AJ306767 clone SHA-87 2.20.1.2.061 OTU 1 seq prokMSA_id:067238 AF495450 clone T08 2.20.1.2.062 OTU 1 seq prokMSA_id:069770 AF419672 a2b032 2.20.1.2.063 OTU 1 seq prokMSA_id:073686 AF445727 Planctomycetales clone SM2F01 2.20.1.2.064 OTU 1 seq prokMSA_id:077713 AB089118 Planctomycetales clone:Rs-E96 2.20.1.2.065 OTU 1 seq prokMSA_id:077930 AB089119 Planctomycetales clone:Rs-B01 2.20.1.2.066 OTU 1 seq prokMSA_id:078220 AB089117 Planctomycetales clone:Rs-A17 2.20.1.2.067 OTU 1 seq prokMSA_id:082583 BX294835 planctomycete clone CY0ARA031C05 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.1.2.068 OTU 1 seq prokMSA_id:082600 BX294899 planctomycete clone CY0ARA055D08 of environmental sample of planctomycete obtained from anaerobic digester from France Evry municipal wastewater treatment plant 2.20.1.2.069 OTU 2 seqs prokMSA_id:082832 BX294750 planctomycete clone CY0ARA027C01 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:085532 BX294860 planctomycete clone CY0ARA031H09 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.1.2.070 OTU 3 seqs prokMSA_id:086591 BX294707 planctomycete clone CY0ARA025G04 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:083141 BX294767 planctomycete clone CY0ARA027E08 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:086053 BX294896 planctomycete clone CY0ARA055B04 of environmental sample of planctomycete obtained from anaerobic digester from France Evry municipal wastewater treatment plant 2.20.1.2.071 OTU 1 seq prokMSA_id:083358 AY226295 clone DBBB-44 2.20.1.2.072 OTU 3 seqs prokMSA_id:083395 BX294682 planctomycete clone CY0ARA025A12 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084859 BX294738 planctomycete clone CY0ARA026H03 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:086191 BX294747 planctomycete clone CY0ARA027B04 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.1.2.073 OTU 1 seq prokMSA_id:083431 BX294704 planctomycete clone CY0ARA025F07 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.1.2.074 OTU 5 seqs prokMSA_id:083496 BX294815 planctomycete clone CY0ARA028H06 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:084223 BX294819 planctomycete clone CY0ARA030B10 of environmental sample of planctomycete obtained from anaerobic digester from France Evry municipal wastewater treatment plant prokMSA_id:084963 BX294832 planctomycete clone CY0ARA031B08 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:083683 BX294876 planctomycete clone CY0ARA032D03 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084748 BX294900 planctomycete clone CY0ARA055E04 of environmental sample of planctomycete obtained from anaerobic digester from France Evry municipal wastewater treatment plant 2.20.1.2.075 OTU 1 seq prokMSA_id:083861 BX294772 planctomycete clone CY0ARA027H04 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.1.2.076 OTU 1 seq prokMSA_id:083877 BX294677 planctomycete clone CY0ARA025A04 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.1.2.077 OTU 1 seq prokMSA_id:083886 BX294764 planctomycete clone CY0ARA027E04 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.1.2.078 OTU 1 seq prokMSA_id:084880 BX294792 planctomycete clone CY0ARA028C11 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.1.2.079 OTU 1 seq prokMSA_id:085414 BX294879 planctomycete clone CY0ARA032D08 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.1.2.080 OTU 1 seq prokMSA_id:085578 BX294845 planctomycete clone CY0ARA031F02 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.1.2.081 OTU 1 seq prokMSA_id:085642 BX294708 planctomycete clone CY0ARA025G08 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.1.2.082 OTU 1 seq prokMSA_id:086399 BX294715 planctomycete clone CY0ARA025H10 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.1.2.083 OTU 1 seq prokMSA_id:086475 BX294806 planctomycete clone CY0ARA028F08 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.1.2.084 OTU 1 seq prokMSA_id:091309 AY344416 clone L5-40 2.20.1.2.085 OTU 1 seq prokMSA_id:091877 AY344415 clone K2-S-31 2.20.1.2.086 OTU 1 seq prokMSA_id:091965 AY345494 clone W4-B52 2.20.1.2.087 OTU 1 seq prokMSA_id:092245 AY354866 planctomycete clone PLY-P2-21 2.20.1.2.088 OTU 1 seq prokMSA_id:095197 AY160873 clone COB P4-6 2.20.1.2.089 OTU 1 seq prokMSA_id:096259 AY225652 planctomycete clone AT-s2-38 2.20.1.2.999 poor quality 52 seqs prokMSA_id:037536 AB010631 clone ASB015 prokMSA_id:024864 AF093597 Freshwater sediment clone ppD10rna prokMSA_id:020616 AF093598 Freshwater sediment clone ppD17rna prokMSA_id:037352 AF093601 Freshwater sediment clone ppD4rna prokMSA_id:031262 AF128657 soil C0150 prokMSA_id:043123 AF145848 Metal-contaminated soil clone K20-53 prokMSA_id:070791 AF320927 Lake Michigan sediment LMBM12-5 prokMSA_id:072809 AF320936 Lake Michigan sediment LMBA16 prokMSA_id:068067 AF365679 clone BT60DS1BA11 prokMSA_id:067990 AF365768 clone BT60DS4BH10 prokMSA_id:049955 AF392764 clone CRF1 prokMSA_id:030506 AF424473 planctomycete MERTZ_2CM_335 prokMSA_id:022332 AF424756 clone A3sb12 prokMSA_id:050535 AF428843 clone CR98-24-37 prokMSA_id:050172 AF428863 clone CR98-24-57 prokMSA_id:017810 AF428938 clone CR98-35-56 prokMSA_id:048900 AF429109 clone CR99-7-75 prokMSA_id:037016 AF429236 clone CR99-2-50 prokMSA_id:038482 AF429249 clone CR99-2-63 prokMSA_id:051260 AF469395 clone 33-PA65B99 prokMSA_id:067289 AF495398 clone F10.35 prokMSA_id:065791 AF507545 soil clone S0204 prokMSA_id:056626 AF507618 soil clone C119 prokMSA_id:065749 AF507632 soil clone C1170 prokMSA_id:072340 AH010342 Lake Michigan sediment LMBA16 and genes prokMSA_id:032118 AJ290188 planctomycete clone DSP09 prokMSA_id:039989 AJ308283 clone F99_22 prokMSA_id:061731 AJ416201 clone Sta2-01 prokMSA_id:061705 AJ416235 clone Sta4-09 prokMSA_id:056709 AJ416242 clone Sta4-29 prokMSA_id:061686 AJ416261 clone Sta5-15 prokMSA_id:062539 AJ504590 isolate P2CN43 prokMSA_id:057274 AJ518208 clone Mul2P1-62 prokMSA_id:057149 AJ518381 clone Neu4P1-60 prokMSA_id:030924 AY037619 soil clone S101 prokMSA_id:017387 AY037637 soil clone S128 prokMSA_id:022187 AY038495 clone CD4F5 prokMSA_id:061301 AY043953 Planctomycetales clone NMS8.92WL prokMSA_id:083168 AY214657 planctomycete clone SL2-1-B2 prokMSA_id:082519 AY214668 planctomycete clone SL2-1-A11 prokMSA_id:085948 AY242736 soil clone Tc130-30 prokMSA_id:090323 AY289465 soil clone ABS-144 prokMSA_id:087976 AY293503 Planctomycetales clone FL08D12 prokMSA_id:087484 AY293504 Planctomycetales clone FL08E08 prokMSA_id:090345 AY323169 planctomycete clone A133-50 prokMSA_id:002817 NONE Pirellula marina ATCC 49069 . prokMSA_id:030954 U43644 clone EH-8 prokMSA_id:047213 U43645 clone EH-25 prokMSA_id:002825 X81946 Pirellula staleyi DSM 6068 . prokMSA_id:002827 X84475 unnamed organism. prokMSA_id:002822 X84599 str. SBR2065. prokMSA_id:039673 Z77604 2-100 C1.4 2.20.1.3 ENVIRONMENTAL_CLONE_AGG8_SUBGROUP 10 seqs 2.20.1.3.001 OTU 2 seqs prokMSA_id:002833 AF029076 Pirellula Pirellula clone 5H12. prokMSA_id:002834 AF029077 Pirellula Pirellula clone 6O13. 2.20.1.3.002 OTU 1 seq prokMSA_id:002831 AF159639 clone HstpL8. 2.20.1.3.003 OTU 1 seq prokMSA_id:002830 L10942 marine snow associated clone agg8. 2.20.1.3.004 OTU 1 seq prokMSA_id:038280 AF424478 planctomycete MERTZ_0CM_394 2.20.1.3.005 OTU 1 seq prokMSA_id:059770 AY133428 clone OB3_161 2.20.1.3.999 poor quality 4 seqs prokMSA_id:068147 AF365585 clone BT60MF2BA7 prokMSA_id:048052 AF432294 Planctomycetes FO-26d-31 prokMSA_id:002829 X89273 clone 11a. prokMSA_id:002832 Z77433 unnamed organism. 2.20.1.4 ENVIRONMENTAL_CLONE_SBR2006 4 seqs 2.20.1.4.999 poor quality 4 seqs prokMSA_id:061484 AY043736 Planctomycetales clone NOW2.82WL prokMSA_id:088452 AY289466 soil clone ABS-335 prokMSA_id:098633 AY395215 clone O03R prokMSA_id:002835 X84551 str. SBR2006. 2.20.2 PLANCTOMYCES_GROUP 313 seqs 2.20.2.1 PLN.LIMNOPHILUS_SUBGROUP 87 seqs 2.20.2.1.001 OTU 3 seqs prokMSA_id:002846 AJ231187 Planctomyces 287 str. 287. prokMSA_id:002847 AJ231188 Planctomyces 282 str. 282. prokMSA_id:002845 X62911 Planctomyces limnophilus ATCC 43296 . 2.20.2.1.002 OTU 1 seq prokMSA_id:002843 AJ241009 clone Sva0503. 2.20.2.1.003 OTU 1 seq prokMSA_id:002842 AB015544 str. BD2-16. 2.20.2.1.004 OTU 2 seqs prokMSA_id:002841 X81950 Planctomyces sp. str. Schlesner 642. prokMSA_id:002838 X81951 Planctomyces sp. str. Schlesner 638. 2.20.2.1.005 OTU 1 seq prokMSA_id:002840 AJ231189 Planctomyces 599 str. 599. 2.20.2.1.006 OTU 1 seq prokMSA_id:002837 X64383 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.20.2.1.007 OTU 1 seq prokMSA_id:018974 AF424486 planctomycete MERTZ_21CM_80 2.20.2.1.008 OTU 1 seq prokMSA_id:019648 AF424471 planctomycete MERTZ_2CM_312 2.20.2.1.009 OTU 1 seq prokMSA_id:020818 AF424460 planctomycete MERTZ_2CM_77 2.20.2.1.010 OTU 1 seq prokMSA_id:022015 AF424475 planctomycete MERTZ_0CM_311 2.20.2.1.011 OTU 4 seqs prokMSA_id:028875 AJ401110 verrucomicrobium DEV033 clone DEV033 prokMSA_id:026236 AJ401119 verrucomicrobium DEV057 clone DEV057 prokMSA_id:046265 AJ401120 verrucomicrobium DEV050 clone DEV050 prokMSA_id:040021 AJ401122 verrucomicrobium DEV036 clone DEV036 2.20.2.1.012 OTU 1 seq prokMSA_id:026861 AF424461 planctomycete MERTZ_2CM_85 2.20.2.1.013 OTU 1 seq prokMSA_id:028302 AF424494 planctomycete MERTZ_21CM_239 2.20.2.1.014 OTU 1 seq prokMSA_id:029509 AJ290177 planctomycete clone DSP01 2.20.2.1.015 OTU 1 seq prokMSA_id:029843 AF424465 planctomycete MERTZ_2CM_201 2.20.2.1.016 OTU 1 seq prokMSA_id:030462 AF424459 planctomycete MERTZ_2CM_67 2.20.2.1.017 OTU 1 seq prokMSA_id:032166 AF424467 planctomycete MERTZ_2CM_267 2.20.2.1.018 OTU 1 seq prokMSA_id:033421 AF424498 planctomycete MERTZ_21CM_298 2.20.2.1.019 OTU 1 seq prokMSA_id:034497 AF424495 planctomycete MERTZ_21CM_249 2.20.2.1.020 OTU 1 seq prokMSA_id:036579 AJ290168 planctomycete clone DSP14 2.20.2.1.021 OTU 1 seq prokMSA_id:041666 AF424464 planctomycete MERTZ_2CM_129 2.20.2.1.022 OTU 1 seq prokMSA_id:043304 AF424488 planctomycete MERTZ_21CM_155 2.20.2.1.023 OTU 1 seq prokMSA_id:044762 AF445715 Planctomycetales clone SM2B12 2.20.2.1.024 OTU 1 seq prokMSA_id:045322 AF424462 planctomycete MERTZ_2CM_102 2.20.2.1.025 OTU 1 seq prokMSA_id:056401 AF142940 PENDANT-28 2.20.2.1.026 OTU 1 seq prokMSA_id:062034 AF523320 clone P4-5 2.20.2.1.027 OTU 1 seq prokMSA_id:063101 AY093482 clone MB-C2-147 2.20.2.1.028 OTU 1 seq prokMSA_id:063103 AY093476 clone MB-C2-105 2.20.2.1.029 OTU 1 seq prokMSA_id:066933 AJ306766 clone SHA-43 2.20.2.1.030 OTU 1 seq prokMSA_id:067274 AF495414 clone M06 2.20.2.1.031 OTU 2 seqs prokMSA_id:067853 AY082454 planctomycete clone 44a-A1-18 prokMSA_id:067840 AY082464 planctomycete clone 44a-B1-33 2.20.2.1.032 OTU 1 seq prokMSA_id:068902 AF142939 PENDANT-27 2.20.2.1.033 OTU 1 seq prokMSA_id:072438 AF254394 UASB_TL4 complete 2.20.2.1.034 OTU 1 seq prokMSA_id:075344 AJ534692 planctomycetales clone S15A-MN17 2.20.2.1.035 OTU 1 seq prokMSA_id:076941 AY164376 Planctomycetales clone BLIB-46 2.20.2.1.036 OTU 2 seqs prokMSA_id:080265 AY193127 candidate division OD1 clone Bol12 prokMSA_id:080184 AY193130 candidate division OD1 clone Bol35 2.20.2.1.037 OTU 1 seq prokMSA_id:080261 AB094953 clone:OHKB16.15 2.20.2.1.038 OTU 4 seqs prokMSA_id:089643 AY328733 DSSD34 prokMSA_id:084043 BX294754 planctomycete clone CY0ARA027C06 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:085278 BX294807 planctomycete clone CY0ARA028F09 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:085255 BX294812 planctomycete clone CY0ARA028G10 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.2.1.039 OTU 1 seq prokMSA_id:085766 AY214638 planctomycete clone SL2-1-D3 2.20.2.1.040 OTU 1 seq prokMSA_id:086309 BX294719 planctomycete clone CY0ARA026B03 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.1.041 OTU 1 seq prokMSA_id:090318 AY191354 planctomycete isolate ODP1176A6H_20_B 2.20.2.1.042 OTU 1 seq prokMSA_id:096501 AY381293 clone Lgja-35 2.20.2.1.999 poor quality 34 seqs prokMSA_id:055771 AF009989 prokMSA_id:021393 AF016730 soil clone S-15 prokMSA_id:031504 AF128649 soil S0211 prokMSA_id:033401 AF141516 Planctomycetales prokMSA_id:032005 AF141562 Verrucomicrobiales prokMSA_id:021453 AF145847 Metal-contaminated soil clone K20-52 prokMSA_id:024804 AF296202 SY6-52 prokMSA_id:018148 AF320965 Lake Michigan sediment LMBA7 prokMSA_id:044548 AF337886 gold mine D32 prokMSA_id:068177 AF365555 clone BT49MF4BC10 prokMSA_id:068965 AF392763 clone P2E5 prokMSA_id:030211 AF392768 clone CBA4 prokMSA_id:020030 AF392771 clone CDF6 prokMSA_id:032386 AF424474 planctomycete MERTZ_0CM_159 prokMSA_id:038745 AF424499 planctomycete MERTZ_21CM_317B prokMSA_id:041795 AF446247 Planctomycetales FL13A06 prokMSA_id:065680 AF507706 soil clone C1164 prokMSA_id:059405 AF540875 clone DP11-12 prokMSA_id:069552 AF544881 planctomycete prokMSA_id:030453 AJ292906 WR813 clone WR813 prokMSA_id:048757 AJ292907 WR853 clone WR853 prokMSA_id:036088 AJ421890 clone Alt9-K9 prokMSA_id:058349 AJ489407 clone NS-G61 prokMSA_id:056905 AJ518688 clone Sai4P1-7 prokMSA_id:035465 AY038520 clone CD1G12 prokMSA_id:061482 AY043737 Planctomycetales clone NOW2.83WL prokMSA_id:080688 AY193187 candidate division OD1 clone DA18 prokMSA_id:083236 AY226337 clone UBBB-65 prokMSA_id:087350 AY261417 clone RFLP U96 prokMSA_id:087552 AY283145 planctomycete clone NS-52 prokMSA_id:087275 AY293514 Planctomycetales clone FL13A08 prokMSA_id:002836 X84569 str. SBR2027. prokMSA_id:002839 X84598 unnamed organism. prokMSA_id:002844 X84631 str. SBR2102. 2.20.2.2 PLN.MARIS_SUBGROUP 226 seqs 2.20.2.2.001 OTU 1 seq prokMSA_id:002871 AB015527 Planctomyces sp. str. BD1-23. 2.20.2.2.002 OTU 1 seq prokMSA_id:002869 AF146262 clone SCALE-10. 2.20.2.2.003 OTU 1 seq prokMSA_id:002868 X81954 Planctomyces sp. str. Schlesner 658. 2.20.2.2.004 OTU 4 seqs prokMSA_id:002857 AJ231190 Planctomyces brasiliensis DSM 5305 . prokMSA_id:002855 X81949 Planctomyces brasiliensis DSM 5305 . prokMSA_id:002867 X85247 Planctomyces brasiliensis ATCC 49424. prokMSA_id:002860 X85249 Planctomyces sp. str. AGA/M18. 2.20.2.2.005 OTU 2 seqs prokMSA_id:002863 AJ231185 Planctomyces 423 str. 423. prokMSA_id:002862 X81953 Planctomyces sp. str. Schlesner 269. 2.20.2.2.006 OTU 1 seq prokMSA_id:002861 X81955 Planctomyces sp. str. Schlesner 664. 2.20.2.2.007 OTU 1 seq prokMSA_id:002859 AJ231186 Planctomyces 248 str. 248. 2.20.2.2.008 OTU 1 seq prokMSA_id:002858 AF170771 clone QSSC8L-11. 2.20.2.2.009 OTU 1 seq prokMSA_id:002856 X81956 Planctomyces sp. str. Schlesner 668. 2.20.2.2.011 OTU 1 seq prokMSA_id:002852 AF142784 Planctomyces ACE-2. 2.20.2.2.012 OTU 2 seqs prokMSA_id:002851 AJ231184 Planctomyces maris DSM 8797 . prokMSA_id:002848 X62910 Planctomyces maris ATCC 29201 . 2.20.2.2.014 OTU 3 seqs prokMSA_id:002853 AF029079 Planctomyces Planctomyces clone 7F15. prokMSA_id:002850 AF142810 clone ACE-35. prokMSA_id:047081 AF440702 planctomycete ARCT1-11 2.20.2.2.015 OTU 1 seq prokMSA_id:002849 X81952 Planctomyces sp. str. Schlesner 130. 2.20.2.2.016 OTU 1 seq prokMSA_id:017529 X99985 sp. clone 1200-34 2.20.2.2.017 OTU 1 seq prokMSA_id:022906 AF142927 PENDANT-15 2.20.2.2.018 OTU 1 seq prokMSA_id:026219 AF424491 planctomycete MERTZ_21CM_203 2.20.2.2.019 OTU 1 seq prokMSA_id:027845 AF424482 planctomycete MERTZ_21CM_40 2.20.2.2.020 OTU 1 seq prokMSA_id:029156 AF428888 clone CR98-35-06 2.20.2.2.021 OTU 1 seq prokMSA_id:032415 AJ290191 planctomycete clone DSP39 2.20.2.2.022 OTU 1 seq prokMSA_id:032999 AJ290176 planctomycete clone DSP11 2.20.2.2.023 OTU 1 seq prokMSA_id:033193 AJ224943 mixed culture isolate Koll-18 2.20.2.2.024 OTU 1 seq prokMSA_id:034174 AJ307950 mRNA clone sipK18 2.20.2.2.026 OTU 1 seq prokMSA_id:039076 AF424500 planctomycete MERTZ_21CM_342 2.20.2.2.027 OTU 1 seq prokMSA_id:041915 AF328191 clone KS50 2.20.2.2.028 OTU 1 seq prokMSA_id:042638 AJ290183 planctomycete clone DSP29 2.20.2.2.029 OTU 1 seq prokMSA_id:045810 AJ252645 Agricultural soil clone SC-I-62 2.20.2.2.030 OTU 1 seq prokMSA_id:046917 AJ252614 Agricultural soil clone SC-I-11 2.20.2.2.031 OTU 1 seq prokMSA_id:050220 AJ290193 planctomycete clone DSP32 2.20.2.2.032 OTU 1 seq prokMSA_id:052232 AF316776 Crater Lake CL500-4 2.20.2.2.033 OTU 1 seq prokMSA_id:060859 AY135914 clone SG2-89 2.20.2.2.034 OTU 1 seq prokMSA_id:062476 AF513967 planctomycete clone LA4-B40N 2.20.2.2.035 OTU 1 seq prokMSA_id:066533 AY100549 clone cvf113042 2.20.2.2.036 OTU 1 seq prokMSA_id:068701 AF485788 clone BCTP21 complete 2.20.2.2.037 OTU 1 seq prokMSA_id:075538 AY150880 planctomycete clone glen99_16 2.20.2.2.038 OTU 1 seq prokMSA_id:077192 AY159131 MF_clone_14 2.20.2.2.039 OTU 1 seq prokMSA_id:082484 AY226192 planctomycete clone ABBB-107 2.20.2.2.040 OTU 10 seqs prokMSA_id:082877 BX294681 planctomycete clone CY0ARA025A10 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:082501 BX294727 planctomycete clone CY0ARA026E07 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084269 BX294741 planctomycete clone CY0ARA027A01 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:085208 BX294777 planctomycete clone CY0ARA028A05 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:083604 BX294784 planctomycete clone CY0ARA028B06 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:084174 BX294789 planctomycete clone CY0ARA028C04 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:084112 BX294804 planctomycete clone CY0ARA028F06 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:084152 BX294852 planctomycete clone CY0ARA031G02 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:086551 BX294878 planctomycete clone CY0ARA032D07 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:082503 BX294893 planctomycete clone CY0ARA032H07 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.041 OTU 16 seqs prokMSA_id:085687 BX294680 planctomycete clone CY0ARA025A09 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:083232 BX294703 planctomycete clone CY0ARA025F04 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084246 BX294706 planctomycete clone CY0ARA025F12 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084250 BX294709 planctomycete clone CY0ARA025G09 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084994 BX294730 planctomycete clone CY0ARA026F02 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084554 BX294732 planctomycete clone CY0ARA026G01 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:082795 BX294758 planctomycete clone CY0ARA027D04 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:082510 BX294761 planctomycete clone CY0ARA027D08 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:086186 BX294766 planctomycete clone CY0ARA027E06 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:086592 BX294786 planctomycete clone CY0ARA028B10 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:084623 BX294791 planctomycete clone CY0ARA028C08 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:086031 BX294798 planctomycete clone CY0ARA028E07 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:084863 BX294864 planctomycete clone CY0ARA032A07 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:082947 BX294870 planctomycete clone CY0ARA032C01 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:086593 BX294871 planctomycete clone CY0ARA032C02 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084018 BX294873 planctomycete clone CY0ARA032C06 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.042 OTU 1 seq prokMSA_id:082539 BX294790 planctomycete clone CY0ARA028C07 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.2.2.044 OTU 1 seq prokMSA_id:082559 BX294904 planctomycete clone CY0ARA056D01 of environmental sample of planctomycete obtained from anaerobic digester from France Evry municipal wastewater treatment plant 2.20.2.2.045 OTU 1 seq prokMSA_id:082602 BX294831 planctomycete clone CY0ARA031B05 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.046 OTU 2 seqs prokMSA_id:083671 BX294851 planctomycete clone CY0ARA031G01 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:082605 BX294888 planctomycete clone CY0ARA032G06 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.049 OTU 14 seqs prokMSA_id:084252 BX294717 planctomycete clone CY0ARA026A07 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084998 BX294748 planctomycete clone CY0ARA027B06 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:082799 BX294755 planctomycete clone CY0ARA027C07 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:085190 BX294773 planctomycete clone CY0ARA027H05 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:085210 BX294795 planctomycete clone CY0ARA028D04 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:084853 BX294797 planctomycete clone CY0ARA028D09 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:084077 BX294803 planctomycete clone CY0ARA028F03 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:085209 BX294829 planctomycete clone CY0ARA031B02 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:082761 BX294836 planctomycete clone CY0ARA031C06 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:083338 BX294841 planctomycete clone CY0ARA031E01 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085819 BX294849 planctomycete clone CY0ARA031F07 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:086410 BX294865 planctomycete clone CY0ARA032A11 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085797 BX294891 planctomycete clone CY0ARA032H03 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085994 BX294905 planctomycete clone CY0ARA056E01 of environmental sample of planctomycete obtained from anaerobic digester from France Evry municipal wastewater treatment plant 2.20.2.2.050 OTU 1 seq prokMSA_id:082895 BX294828 planctomycete clone CY0ARA031B01 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.053 OTU 40 seqs prokMSA_id:048540 AF234749 sludge H28 prokMSA_id:036768 AF234752 sludge A24 prokMSA_id:084288 BX294679 planctomycete clone CY0ARA025A07 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085380 BX294683 planctomycete clone CY0ARA025B01 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085905 BX294684 planctomycete clone CY0ARA025B02 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:086372 BX294688 planctomycete clone CY0ARA025C01 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084640 BX294691 planctomycete clone CY0ARA025C09 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085473 BX294695 planctomycete clone CY0ARA025D07 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:082966 BX294697 planctomycete clone CY0ARA025E02 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085880 BX294702 planctomycete clone CY0ARA025F03 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:083185 BX294720 planctomycete clone CY0ARA026B05 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:086517 BX294721 planctomycete clone CY0ARA026C04 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085941 BX294728 planctomycete clone CY0ARA026E08 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:082540 BX294734 planctomycete clone CY0ARA026G05 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:086222 BX294736 planctomycete clone CY0ARA026G08 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085065 BX294742 planctomycete clone CY0ARA027A05 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:083265 BX294751 planctomycete clone CY0ARA027C02 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:084847 BX294757 planctomycete clone CY0ARA027D02 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:083345 BX294768 planctomycete clone CY0ARA027F06 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:083894 BX294769 planctomycete clone CY0ARA027G08 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:084639 BX294774 planctomycete clone CY0ARA027H07 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:085462 BX294776 planctomycete clone CY0ARA028A01 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:083346 BX294779 planctomycete clone CY0ARA028A10 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:086496 BX294782 planctomycete clone CY0ARA028B04 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:085753 BX294788 planctomycete clone CY0ARA028C03 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:085233 BX294805 planctomycete clone CY0ARA028F07 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:084423 BX294809 planctomycete clone CY0ARA028G06 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:083928 BX294813 planctomycete clone CY0ARA028H01 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:086620 BX294833 planctomycete clone CY0ARA031C03 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084204 BX294834 planctomycete clone CY0ARA031C04 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085825 BX294838 planctomycete clone CY0ARA031D05 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:082901 BX294843 planctomycete clone CY0ARA031E06 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085597 BX294848 planctomycete clone CY0ARA031F06 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085264 BX294858 planctomycete clone CY0ARA031H02 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085700 BX294861 planctomycete clone CY0ARA031H10 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:083442 BX294874 planctomycete clone CY0ARA032C07 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:083493 BX294880 planctomycete clone CY0ARA032E01 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084498 BX294884 planctomycete clone CY0ARA032E08 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085031 BX294886 planctomycete clone CY0ARA032F07 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:083401 BX294890 planctomycete clone CY0ARA032H01 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.054 OTU 1 seq prokMSA_id:083075 BX294718 planctomycete clone CY0ARA026A10 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.056 OTU 8 seqs prokMSA_id:085769 BX294674 planctomycete clone CY0ARA025A01 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085086 BX294687 planctomycete clone CY0ARA025B11 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:083154 BX294690 planctomycete clone CY0ARA025C06 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:083914 BX294699 planctomycete clone CY0ARA025E06 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084274 BX294765 planctomycete clone CY0ARA027E05 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:085488 BX294793 planctomycete clone CY0ARA028C12 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:084753 BX294854 planctomycete clone CY0ARA031G06 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:083190 BX294881 planctomycete clone CY0ARA032E02 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.057 OTU 1 seq prokMSA_id:083300 BX294872 planctomycete clone CY0ARA032C05 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.058 OTU 1 seq prokMSA_id:083497 BX294869 planctomycete clone CY0ARA032B06 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.059 OTU 1 seq prokMSA_id:083569 BX294894 planctomycete clone CY0ARA032H11 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.060 OTU 2 seqs prokMSA_id:085441 BX294787 planctomycete clone CY0ARA028B12 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:083654 BX294862 planctomycete clone CY0ARA032A02 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.061 OTU 1 seq prokMSA_id:083708 AY217507 planctomycete clone WCB48 2.20.2.2.062 OTU 1 seq prokMSA_id:083801 AY221049 clone CCM16a 2.20.2.2.063 OTU 1 seq prokMSA_id:083996 BX294685 planctomycete clone CY0ARA025B04 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.064 OTU 2 seqs prokMSA_id:084069 BX294722 planctomycete clone CY0ARA026C05 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:086466 BX294800 planctomycete clone CY0ARA028E09 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.2.2.065 OTU 1 seq prokMSA_id:084104 BX294796 planctomycete clone CY0ARA028D05 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.2.2.066 OTU 1 seq prokMSA_id:084121 BX294735 planctomycete clone CY0ARA026G07 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.068 OTU 12 seqs prokMSA_id:085389 BX294675 planctomycete clone CY0ARA025A02 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085309 BX294724 planctomycete clone CY0ARA026D07 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085891 BX294752 planctomycete clone CY0ARA027C03 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:083132 BX294753 planctomycete clone CY0ARA027C04 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:084911 BX294756 planctomycete clone CY0ARA027D01 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:083373 BX294763 planctomycete clone CY0ARA027D12 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:084138 BX294770 planctomycete clone CY0ARA027G11 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:085984 BX294780 planctomycete clone CY0ARA028B01 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:086090 BX294844 planctomycete clone CY0ARA031E07 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:086400 BX294846 planctomycete clone CY0ARA031F03 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085009 BX294847 planctomycete clone CY0ARA031F05 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:086297 BX294850 planctomycete clone CY0ARA031F10 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.069 OTU 1 seq prokMSA_id:084394 BX294906 planctomycete clone CY0ARA056E05 of environmental sample of planctomycete obtained from anaerobic digester from France Evry municipal wastewater treatment plant 2.20.2.2.070 OTU 1 seq prokMSA_id:084425 AY217506 planctomycete clone WCB136 2.20.2.2.071 OTU 1 seq prokMSA_id:084446 BX294726 planctomycete clone CY0ARA026D10 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.072 OTU 1 seq prokMSA_id:084481 BX294689 planctomycete clone CY0ARA025C03 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.073 OTU 1 seq prokMSA_id:084519 BX294716 planctomycete clone CY0ARA025H12 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.074 OTU 1 seq prokMSA_id:084572 BX294867 planctomycete clone CY0ARA032B01 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.075 OTU 1 seq prokMSA_id:084730 BX294816 planctomycete clone CY0ARA028H07 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.2.2.076 OTU 1 seq prokMSA_id:084917 BX294907 planctomycete clone CY0ARA056H03 of environmental sample of planctomycete obtained from anaerobic digester from France Evry municipal wastewater treatment plant 2.20.2.2.077 OTU 1 seq prokMSA_id:085037 BX294842 planctomycete clone CY0ARA031E04 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.2.2.078 OTU 1 seq prokMSA_id:085116 AY226205 clone ABBB-34 2.20.2.2.079 OTU 1 seq prokMSA_id:085360 BX294802 planctomycete clone CY0ARA028F02 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.2.2.080 OTU 1 seq prokMSA_id:085582 BX294783 planctomycete clone CY0ARA028B05 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.2.2.081 OTU 1 seq prokMSA_id:086335 BX294749 planctomycete clone CY0ARA027B07 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.2.2.082 OTU 1 seq prokMSA_id:088168 AY328798 DSSD101 2.20.2.2.083 OTU 1 seq prokMSA_id:088436 AY289461 soil clone DS-54 2.20.2.2.084 OTU 1 seq prokMSA_id:092410 AY354151 clone pIR3BF05 2.20.2.2.085 OTU 1 seq prokMSA_id:092536 AY354172 clone pIR3BE02 2.20.2.2.086 OTU 1 seq prokMSA_id:092648 AY354152 clone pIR3BG11 2.20.2.2.087 OTU 1 seq prokMSA_id:095350 AY375065 clone B97 2.20.2.2.999 poor quality 45 seqs prokMSA_id:024793 AB010630 clone ASB011 prokMSA_id:028960 AF145859 Metal-contaminated soil clone K20-68 prokMSA_id:029967 AF145864 Metal-contaminated soil clone K20-75 prokMSA_id:032201 AF146258 SCALE-6 prokMSA_id:018861 AF170767 Planctomycetales QSSC8L-7 prokMSA_id:032865 AF195423 Planctomyces kpj342f prokMSA_id:069207 AF210721 clone SSA2 prokMSA_id:017286 AF332312 clone T26-12 prokMSA_id:068024 AF365725 clone BT60DS4BA3 prokMSA_id:068964 AF392765 clone CRA8 prokMSA_id:045101 AF392773 clone CDD11 prokMSA_id:045086 AF392777 clone LAC12 prokMSA_id:030900 AF392779 clone LBG9 prokMSA_id:068963 AF392784 clone LEH8 prokMSA_id:038735 AF428588 clone CRD99-10 prokMSA_id:045981 AF428607 clone CRD99-29 prokMSA_id:042646 AF428635 clone CRD99-57 prokMSA_id:028543 AF428749 clone CR98-5-19 prokMSA_id:024246 AF428818 clone CR98-24-12 prokMSA_id:036724 AF428849 clone CR98-24-43 prokMSA_id:029450 AF429009 clone CR99-35-51 prokMSA_id:035168 AF429124 clone CR99-24-14 prokMSA_id:067668 AF485392 clone G5 prokMSA_id:067662 AF485401 clone G14 prokMSA_id:038038 AJ270190 symbiont of Hodotermes mossambicus Hm10 prokMSA_id:061714 AJ416224 clone Sta3-18 prokMSA_id:061670 AJ416275 clone Sta5-50 prokMSA_id:058326 AJ489438 clone NS08-22 prokMSA_id:062596 AJ504525 isolate P1CN64 prokMSA_id:056999 AJ518571 clone Qui4P2-26 prokMSA_id:043416 AY038488 planctomycete clone CD4H3 prokMSA_id:069085 AY144297 Planctomyces sp. LTUP05356 prokMSA_id:072940 AY144298 Planctomyces sp. LTUP07056 prokMSA_id:075625 AY149211 DGGE band C9 prokMSA_id:085331 AY221048 clone CCM15b prokMSA_id:087406 AY283131 planctomycete clone NS-10 prokMSA_id:089472 AY323167 planctomycete clone A115-26 prokMSA_id:089503 AY323168 planctomycete clone A115-27 prokMSA_id:094462 AY369141 clone F-OTU1 prokMSA_id:002854 X84457 unnamed organism. prokMSA_id:002864 X84496 unnamed organism. prokMSA_id:002870 X84500 unnamed organism. prokMSA_id:002872 X84515 str. SBR1085. prokMSA_id:002865 X84529 unnamed organism. prokMSA_id:002866 X84611 unnamed organism. 2.20.3 ISOSPHAERA_GROUP 189 seqs 2.20.3.1 ISO.PALLIDA_SUBGROUP 67 seqs 2.20.3.1.001 OTU 1 seq prokMSA_id:002885 X81960 Isosphaera sp. str. Schlesner 657. 2.20.3.1.002 OTU 1 seq prokMSA_id:002884 AJ231195 Isosphaera pallida DSM 9630 . 2.20.3.1.003 OTU 1 seq prokMSA_id:002883 AF146252 clone CLEAR-30. 2.20.3.1.004 OTU 1 seq prokMSA_id:002882 AJ231194 str. 532. 2.20.3.1.005 OTU 2 seqs prokMSA_id:031175 AF239699 Isosphaera-like str. CJuql1 prokMSA_id:002881 AJ231193 str. 563. 2.20.3.1.006 OTU 1 seq prokMSA_id:002879 X81958 Isosphaera sp. str. Schlesner 666. 2.20.3.1.007 OTU 1 seq prokMSA_id:002878 AJ231192 str. 394. 2.20.3.1.008 OTU 1 seq prokMSA_id:002877 X81959 Isosphaera sp. str. Schlesner 640. 2.20.3.1.009 OTU 1 seq prokMSA_id:002875 X64384 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.20.3.1.010 OTU 2 seqs prokMSA_id:016557 AF244749 Nostocoida limicola III strain Ben222 prokMSA_id:051778 AF244752 Nostocoida limicola III strain Ben225 2.20.3.1.011 OTU 1 seq prokMSA_id:020269 AF244748 Nostocoida limicola III strain Ben220 2.20.3.1.012 OTU 1 seq prokMSA_id:020352 AJ252623 Agricultural soil clone SC-I-20 2.20.3.1.013 OTU 2 seqs prokMSA_id:024367 AJ292682 WD287 clone WD287 prokMSA_id:083100 AY242728 soil clone Tc123-G10 2.20.3.1.014 OTU 1 seq prokMSA_id:027191 AJ292683 2112 clone 2112 2.20.3.1.015 OTU 1 seq prokMSA_id:030187 AF316774 Crater Lake CL500-100 2.20.3.1.016 OTU 1 seq prokMSA_id:030562 AF424502 planctomycete MERTZ_21CM_399 2.20.3.1.017 OTU 1 seq prokMSA_id:033768 AF244751 Nostocoida limicola III strain Ben224 2.20.3.1.018 OTU 1 seq prokMSA_id:042098 AF445645 Planctomycetales clone SM1A02 2.20.3.1.019 OTU 1 seq prokMSA_id:043216 AF256042 GT43a 2.20.3.1.020 OTU 1 seq prokMSA_id:045617 AF239692 Isosphaera-like str. C2-3 2.20.3.1.021 OTU 1 seq prokMSA_id:046130 AF234712 sludge A19 2.20.3.1.022 OTU 1 seq prokMSA_id:053180 AF244750 Nostocoida limicola III strain Ben223 2.20.3.1.023 OTU 2 seqs prokMSA_id:060597 AF407701 clone G18 prokMSA_id:060571 AF407729 clone B86 2.20.3.1.024 OTU 1 seq prokMSA_id:060861 AY135912 clone SG2-79 2.20.3.1.025 OTU 1 seq prokMSA_id:063228 AF523999 clone FW26 2.20.3.1.026 OTU 1 seq prokMSA_id:063312 AF523905 clone RCP2-37 2.20.3.1.027 OTU 1 seq prokMSA_id:076008 AY159134 MF_clone_19 2.20.3.1.028 OTU 1 seq prokMSA_id:082033 AY192052 Flavobacteria 2.20.3.1.029 OTU 1 seq prokMSA_id:082541 AY242731 soil clone Tc132-60 2.20.3.1.030 OTU 1 seq prokMSA_id:082639 AY250896 clone TLT148 2.20.3.1.031 OTU 1 seq prokMSA_id:082713 AY242729 soil clone Tc123-D10 2.20.3.1.032 OTU 1 seq prokMSA_id:082900 AY242733 soil clone Tc127-86 2.20.3.1.033 OTU 1 seq prokMSA_id:085303 BX294885 planctomycete clone CY0ARA032F01 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.3.1.034 OTU 1 seq prokMSA_id:086172 AY242727 soil clone Tc123-C09 2.20.3.1.035 OTU 1 seq prokMSA_id:086688 AY242730 soil clone Tc123-189 2.20.3.1.999 poor quality 28 seqs prokMSA_id:016411 AF090549 BHB5 prokMSA_id:038027 AF090551 BHA14 prokMSA_id:068001 AF365756 clone BT60DS4BF10 prokMSA_id:045041 AF390943 clone ICBMG6 prokMSA_id:046846 AF390962 clone TFBMI5 prokMSA_id:027368 AF392766 clone CRC7 prokMSA_id:050869 AF392774 clone CEF8 prokMSA_id:028628 AF446328 FL13A01 prokMSA_id:035108 AF465649 planctomycete YNPRH1A prokMSA_id:029382 AF465678 DGGE band YNPRH-B21 prokMSA_id:058024 AF525960 planctomycete clone PLA5 prokMSA_id:055480 AJ225334 Planctomycete species ; clone 3 prokMSA_id:024324 AJ233570 clone WR131 prokMSA_id:032714 AJ233571 clone WR135 prokMSA_id:044801 AJ292916 WR869 clone WR869 prokMSA_id:026815 AJ292917 WR888 clone WR888 prokMSA_id:023925 AJ292918 WR8107 clone WR8107 prokMSA_id:039698 AJ292919 WR8116 clone WR8116 prokMSA_id:072902 AJ431346 planctomycete isolate ikaite un-c19 prokMSA_id:056980 AJ518592 clone Qui4P2-55 prokMSA_id:056226 AJ518601 clone Qui4P2-68 prokMSA_id:085913 AY242732 soil clone Tc135-216 prokMSA_id:091695 AY345496 clone W4-B45 prokMSA_id:096190 AY395117 clone C03R prokMSA_id:002874 X64372 Isosphaera pallida str. IS 1B ATCC 43644 . prokMSA_id:002873 X66786 Isosphaera pallida str. IS 1B ATCC 43644 = . prokMSA_id:002876 X84481 str. SBR1038. prokMSA_id:002880 Z77357 unnamed organism. 2.20.3.2 MOUNT_COOT-THA_ENVIRONMENTAL_CLONES_I 45 seqs 2.20.3.2.001 OTU 1 seq prokMSA_id:002890 X64378 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.20.3.2.002 OTU 1 seq prokMSA_id:002889 X64375 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.20.3.2.003 OTU 1 seq prokMSA_id:002888 X64377 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.20.3.2.004 OTU 1 seq prokMSA_id:002887 X64376 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.20.3.2.005 OTU 1 seq prokMSA_id:016827 AF271310 planctomycete clone11 2.20.3.2.006 OTU 2 seqs prokMSA_id:019485 AF271312 planctomycete clone14 prokMSA_id:017601 AF271322 planctomycete clone27 2.20.3.2.007 OTU 1 seq prokMSA_id:017920 AF465657 planctomycete YNPRH54A 2.20.3.2.008 OTU 1 seq prokMSA_id:022171 AF316775 Crater Lake CL500-52 2.20.3.2.009 OTU 1 seq prokMSA_id:022379 AF391976 thermal soil clone YNPFFP32 2.20.3.2.010 OTU 1 seq prokMSA_id:027713 AF271340 planctomycete clone7 2.20.3.2.011 OTU 1 seq prokMSA_id:029777 AF271323 planctomycete clone28 2.20.3.2.012 OTU 1 seq prokMSA_id:031715 AF271341 planctomycete clone9 2.20.3.2.013 OTU 1 seq prokMSA_id:032304 AF271321 planctomycete clone26 2.20.3.2.014 OTU 1 seq prokMSA_id:033475 AF271327 planctomycete clone34 2.20.3.2.015 OTU 1 seq prokMSA_id:036970 AF271328 planctomycete clone35 2.20.3.2.016 OTU 1 seq prokMSA_id:041568 AF271318 planctomycete clone22 2.20.3.2.017 OTU 1 seq prokMSA_id:042389 AF234727 sludge A12 2.20.3.2.018 OTU 1 seq prokMSA_id:057892 AF525963 planctomycete clone PLA8 2.20.3.2.019 OTU 1 seq prokMSA_id:044900 AF271314 planctomycete clone18 2.20.3.2.020 OTU 1 seq prokMSA_id:046659 AF271325 planctomycete clone32 2.20.3.2.021 OTU 1 seq prokMSA_id:063309 AF523904 clone RCP2-93 2.20.3.2.022 OTU 1 seq prokMSA_id:065629 AF507771 soil clone S1166 2.20.3.2.023 OTU 1 seq prokMSA_id:071943 AJ007656 clone 1404-40 2.20.3.2.024 OTU 1 seq prokMSA_id:074478 AF234744 sludge A35 2.20.3.2.025 OTU 1 seq prokMSA_id:075245 AY150909 planctomycete clone WYO1c 2.20.3.2.026 OTU 1 seq prokMSA_id:085962 BX294692 planctomycete clone CY0ARA025D03 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.3.2.027 OTU 1 seq prokMSA_id:090542 AY289462 soil clone ABS-368 2.20.3.2.999 poor quality 17 seqs prokMSA_id:056670 AB087343 clone:F43 prokMSA_id:031059 AF145840 Metal-contaminated soil clone K20-45 prokMSA_id:041362 AF392769 clone CBF5 prokMSA_id:016673 AF392770 clone CBG1 prokMSA_id:031823 AF392772 clone CDA1 prokMSA_id:043340 AF392776 clone LAE2 prokMSA_id:043715 AF392781 clone LBB3 prokMSA_id:044632 AF445147 clone Tc89 prokMSA_id:065844 AF507484 soil clone S064 prokMSA_id:065788 AF507553 soil clone S0238 prokMSA_id:065761 AF507616 soil clone C197 prokMSA_id:065739 AF507641 soil clone C1194 prokMSA_id:057230 AJ518273 clone Mul2P3-13 prokMSA_id:057067 AJ518471 clone Neu4P3-95 prokMSA_id:076382 AY174192 Acidobacteriales clone WS007 prokMSA_id:075864 AY174208 Acidobacteriales clone WS091 prokMSA_id:002886 X64379 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.20.3.3 GMT.OBSCURIGLOBUS_SUBGROUP 64 seqs 2.20.3.3.001 OTU 1 seq prokMSA_id:002899 AF121889 clone 2BP-58. 2.20.3.3.002 OTU 1 seq prokMSA_id:002898 AF013556 unnamed organism. 2.20.3.3.003 OTU 1 seq prokMSA_id:002897 X81957 Gemmata obscuriglobus str. Schlesner 633. 2.20.3.3.004 OTU 1 seq prokMSA_id:002896 AF013549 unnamed organism. 2.20.3.3.005 OTU 3 seqs prokMSA_id:002892 AJ231191 Gemmata obscuriglobus DSM 5831 . prokMSA_id:002895 X56305 Gemmata obscuriglobus str. UQM 2246 ACM 2224 . prokMSA_id:002893 X85248 Gemmata obscuriglobus ACM 2246. 2.20.3.3.006 OTU 2 seqs prokMSA_id:002894 AF018188 clone env.OPS 3. prokMSA_id:060607 AF407691 clone R38 2.20.3.3.007 OTU 2 seqs prokMSA_id:034282 AF271329 planctomycete clone37 prokMSA_id:019938 AF271333 planctomycete clone43 2.20.3.3.008 OTU 1 seq prokMSA_id:022404 AF239693 Gemmata-like str. CJuql4 2.20.3.3.009 OTU 1 seq prokMSA_id:022723 AF312220 Pietermaritzburg Y14-6 2.20.3.3.010 OTU 1 seq prokMSA_id:023399 AF239696 Gemmata-like str. JW11-2f5 2.20.3.3.011 OTU 1 seq prokMSA_id:024446 AF445094 clone Tc23 2.20.3.3.012 OTU 1 seq prokMSA_id:025919 AF239695 Gemmata-like str. JW10-3f1 2.20.3.3.013 OTU 2 seqs prokMSA_id:037491 AF271311 planctomycete clone13 prokMSA_id:026636 AF445129 clone Tc69 2.20.3.3.014 OTU 1 seq prokMSA_id:056147 AF407717 clone B16 2.20.3.3.015 OTU 3 seqs prokMSA_id:039203 AJ290178 planctomycete clone DSP31 prokMSA_id:046177 AJ290180 planctomycete clone DSP21 prokMSA_id:038228 AJ290185 planctomycete clone DSP16 2.20.3.3.016 OTU 3 seqs prokMSA_id:052302 AF239694 Gemmata-like str. JW3-8s0 prokMSA_id:041796 AF239697 Gemmata-like str. JW9-3f1 prokMSA_id:042240 AF239698 Gemmata-like str. Soil9 2.20.3.3.017 OTU 1 seq prokMSA_id:045545 AF445135 clone Tc75 2.20.3.3.018 OTU 1 seq prokMSA_id:063227 AF523998 clone FW101 2.20.3.3.019 OTU 1 seq prokMSA_id:064440 AY102882 clone BCM1-38B 2.20.3.3.020 OTU 1 seq prokMSA_id:073916 AF271316 planctomycete clone20 2.20.3.3.021 OTU 1 seq prokMSA_id:075955 AY168744 clone HC-35 2.20.3.3.022 OTU 1 seq prokMSA_id:082736 AY217514 clone WCB91 2.20.3.3.023 OTU 1 seq prokMSA_id:082885 BX294808 planctomycete clone CY0ARA028F10 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.3.3.024 OTU 2 seqs prokMSA_id:083039 BX294744 planctomycete clone CY0ARA027A08 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:084729 BX294781 planctomycete clone CY0ARA028B03 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.3.3.025 OTU 1 seq prokMSA_id:083360 BX294799 planctomycete clone CY0ARA028E08 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.20.3.3.026 OTU 1 seq prokMSA_id:084029 AY242734 soil clone Tc128-89 2.20.3.3.027 OTU 1 seq prokMSA_id:085188 AY214620 planctomycete clone SL2-1-F3 2.20.3.3.028 OTU 1 seq prokMSA_id:085460 AY242735 soil clone TcA2 2.20.3.3.999 poor quality 26 seqs prokMSA_id:002901 AF018198 clone env.OPS 16. prokMSA_id:044800 AF141399 Planctomycetaceae prokMSA_id:018284 AF141417 Verrucomicrobiales prokMSA_id:027459 AF145812 Metal-contaminated soil clone K20-09 prokMSA_id:043833 AF145855 Metal-contaminated soil clone K20-63 prokMSA_id:031256 AF145876 Metal-contaminated soil clone K20-92 prokMSA_id:071285 AF320948 Lake Michigan sediment LMBA31 prokMSA_id:017741 AF388340 clone Ac15 prokMSA_id:034289 AF390961 clone TFBME6 prokMSA_id:042169 AF392767 clone CBD12 prokMSA_id:031824 AF392775 clone LAH11 prokMSA_id:043642 AF392782 clone LBD3 prokMSA_id:026058 AF392783 clone LEC6 prokMSA_id:024103 AF428858 clone CR98-24-52 prokMSA_id:065701 AF507677 soil clone C1223 prokMSA_id:072692 AH010348 Lake Michigan sediment LMBA31 and genes prokMSA_id:043381 AJ421202 clone C3-K12 prokMSA_id:056865 AJ518738 clone Sai4P3-62 prokMSA_id:080879 AY191895 clone BG12 prokMSA_id:089115 AY304029 soil clone Dpcom68 prokMSA_id:089718 AY304030 soil clone Dpcom69 prokMSA_id:095761 AY395092 clone A14R prokMSA_id:002900 U68622 clone M37. prokMSA_id:002891 X54522 Gemmata obscuriglobus str. UQM 446 . prokMSA_id:002902 X84520 unnamed organism. prokMSA_id:002903 X84570 str. SBR2030. 2.20.3.4 STR.SBR1008_SUBGROUP 13 seqs 2.20.3.4.001 OTU 5 seqs prokMSA_id:037592 AJ290195 planctomycete clone DSP43 prokMSA_id:084168 BX294693 planctomycete clone CY0ARA025D04 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084179 BX294824 planctomycete clone CY0ARA031A06 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:085932 BX294855 planctomycete clone CY0ARA031G07 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:086263 BX294882 planctomycete clone CY0ARA032E05 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.20.3.4.999 poor quality 8 seqs prokMSA_id:027620 AF145880 Metal-contaminated soil clone K20-96 prokMSA_id:019096 AF392762 clone P2G12 prokMSA_id:002909 X84453 str. SBR1008. prokMSA_id:002908 X84497 str. SBR1063. prokMSA_id:002904 X84501 str. SBR1068. prokMSA_id:002906 X84505 str. SBR1073. prokMSA_id:002907 X84608 str. SBR2077. prokMSA_id:002905 X84622 str. SBR2092. 2.20.4 ENVIRONMENTAL_CLONE_AGG27 1 seq 2.20.4.001 OTU 1 seq prokMSA_id:002910 L10943 marine snow associated clone agg27. 2.20.5 ENVIRONMENTAL_CLONE_A36O_GROUP 6 seqs 2.20.5.001 OTU 1 seq prokMSA_id:039730 AF407207 clone GIF19 2.20.5.002 OTU 1 seq prokMSA_id:042235 AJ390465 soil PBS-37 2.20.5.999 poor quality 4 seqs prokMSA_id:059441 AF540814 clone dp11-6 prokMSA_id:002911 X91443 clone A20n. prokMSA_id:002913 X91459 clone A36o. prokMSA_id:002912 Z69327 str. s23. 2.20.6 CHLAMYDOPHILA_SUBDIVISION 222 seqs 2.20.6.1 ENVIRONMENTAL_CLONE_WCHB1-58_GROUP 20 seqs 2.20.6.1.001 OTU 1 seq prokMSA_id:002918 AF142813 clone ACE-38. 2.20.6.1.002 OTU 1 seq prokMSA_id:002917 AF050610 clone WCHB1-58. 2.20.6.1.003 OTU 1 seq prokMSA_id:002916 AF047574 clone LGd8. 2.20.6.1.004 OTU 1 seq prokMSA_id:002915 AF047562 clone OPd3. 2.20.6.1.005 OTU 1 seq prokMSA_id:029095 AF424447 candidate division OP11 MERTZ_21CM_65 2.20.6.1.006 OTU 1 seq prokMSA_id:035504 AF316799 Crater Lake CL500-94 2.20.6.1.007 OTU 1 seq prokMSA_id:042311 AF316798 Crater Lake CL500-13 2.20.6.1.008 OTU 1 seq prokMSA_id:046588 AF424443 candidate division OP11 MERTZ_21CM_9 2.20.6.1.009 OTU 1 seq prokMSA_id:062662 AF507904 clone ML623J-28 2.20.6.1.010 OTU 2 seqs prokMSA_id:079995 AY193136 candidate division OD1 clone Bol25 prokMSA_id:079860 AY193140 candidate division OD1 clone Bol6 2.20.6.1.011 OTU 1 seq prokMSA_id:080018 AY193195 candidate division OD1 clone SRC3 2.20.6.1.999 poor quality 8 seqs prokMSA_id:020492 AF428801 clone CR98-5-71 prokMSA_id:077139 AF432842 clone S54.12PG prokMSA_id:025093 AF469392 clone 33-PA114B99 prokMSA_id:080649 AY193211 candidate division OD1 clone SRC2 prokMSA_id:079749 AY193243 clone Bol43 prokMSA_id:080606 AY193254 clone Bol64 prokMSA_id:085030 AY226270 clone BBBB-89 prokMSA_id:002914 X91482 clone A59p. 2.20.6.2 CHLAMYDOPHILA_GROUP 202 seqs 2.20.6.2.1 ENVIRONMENTAL_CLONE_A55N 1 seq 2.20.6.2.1.999 poor quality 1 seq prokMSA_id:002919 X91478 clone A55n. 2.20.6.2.2 SMK.NEGEVENSIS_SUBGROUP 67 seqs 2.20.6.2.2.001 OTU 1 seq prokMSA_id:002936 AF042496 Waddlia chondrophila str. WSU 86/1044. 2.20.6.2.2.002 OTU 2 seqs prokMSA_id:002934 L27666 Simkania negevensis str. Z. prokMSA_id:002935 U68460 Simkania negevensis str. Z. 2.20.6.2.2.003 OTU 2 seqs prokMSA_id:002933 AF083616 unnamed organism. prokMSA_id:002930 AF098330 unnamed organism. 2.20.6.2.2.004 OTU 1 seq prokMSA_id:002932 AF083615 unnamed organism. 2.20.6.2.2.005 OTU 1 seq prokMSA_id:002931 AF083614 unnamed organism. 2.20.6.2.2.006 OTU 1 seq prokMSA_id:002925 U68599 clone M12. 2.20.6.2.2.007 OTU 1 seq prokMSA_id:002924 AF142864 clone BURTON-46. 2.20.6.2.2.008 OTU 1 seq prokMSA_id:002923 AF142972 clone TAYNAYA-24. 2.20.6.2.2.009 OTU 2 seqs prokMSA_id:049792 AF366365 Parachlamydia sp. Hall's coccus prokMSA_id:002920 Y07556 Parachlamydia acanthamoebae. 2.20.6.2.2.010 OTU 2 seqs prokMSA_id:017182 AF400484 Endosymbiont of Bemisia tabaci biotype Jatropha prokMSA_id:089521 AY140910 Fritschea bemisiae YaeL yaeL cds; putative glycosylhydrolase and putative transposase genes complete cds; 23S and 5S genes complete ; argynyl tRNA synthetase argS YjeE yjeE probable GTP-binding protein polymerase III epsilon subunit and phosphoglycerate kinase pgk genes complete cds; and unknown 2.20.6.2.2.011 OTU 3 seqs prokMSA_id:038880 AF364564 Chlamydiales clone P-4 prokMSA_id:018839 AF364569 Chlamydiales clone P-7 prokMSA_id:044515 AF364575 Chlamydiales clone P-9 2.20.6.2.2.012 OTU 14 seqs prokMSA_id:052141 AF364559 Chlamydiales clone P-20 prokMSA_id:043225 AF364560 Chlamydiales clone P-1 prokMSA_id:039277 AF364561 Chlamydiales clone P-2 prokMSA_id:024629 AF364562 Chlamydiales clone P-13 prokMSA_id:033726 AF364566 Chlamydiales clone P-14 prokMSA_id:030860 AF364567 Chlamydiales clone P-15 prokMSA_id:040042 AF364570 Chlamydiales clone P-16 prokMSA_id:025769 AF364571 Chlamydiales clone P-17 prokMSA_id:043574 AF364572 Chlamydiales clone P-18 prokMSA_id:026915 AF364573 Chlamydiales clone P-19 prokMSA_id:031998 AF364574 Chlamydiales clone P-8 prokMSA_id:034118 AF364576 Chlamydiales clone P-10 prokMSA_id:022160 AF364577 Chlamydiales clone P-11 prokMSA_id:050356 AF364578 Chlamydiales clone P-12 2.20.6.2.2.013 OTU 1 seq prokMSA_id:023644 AF308693 corvenA4 2.20.6.2.2.014 OTU 1 seq prokMSA_id:024341 AF177275 Neochlamydia hartmannellae 2.20.6.2.2.015 OTU 1 seq prokMSA_id:030011 AF424515 Chlamydiales MERTZ_2CM_173 2.20.6.2.2.016 OTU 1 seq prokMSA_id:031309 AF448722 Chlamydiales clone cvE6 complete 2.20.6.2.2.017 OTU 1 seq prokMSA_id:033207 AF448723 Chlamydiales clone cvE9 complete 2.20.6.2.2.018 OTU 2 seqs prokMSA_id:045999 AF364563 Chlamydiales clone P-3 prokMSA_id:051801 AF364565 Chlamydiales clone P-5 2.20.6.2.2.019 OTU 1 seq prokMSA_id:054620 AF346001 Waddlia chondrophila complete ; and 23S 2.20.6.2.2.020 OTU 1 seq prokMSA_id:065613 AF507790 soil clone S1223 2.20.6.2.2.021 OTU 1 seq prokMSA_id:066706 AF478463 Parachlamydiaceae cvC7 2.20.6.2.2.022 OTU 1 seq prokMSA_id:067842 AY082465 Chlamydiales clone 44a-B1-34 2.20.6.2.2.023 OTU 2 seqs prokMSA_id:072076 AY114316 Chlamydia sp. clone LD1-PA25 prokMSA_id:071546 AY114327 Chlamydia sp. clone LD1-PA42 2.20.6.2.2.024 OTU 1 seq prokMSA_id:075269 AY159837 Cf. Chlamydia sp. RLUH-1 2.20.6.2.2.025 OTU 1 seq prokMSA_id:080158 AY193206 Chlamydiales 2.20.6.2.2.026 OTU 1 seq prokMSA_id:083246 AY223862 Candidatus Rhabdochlamydia porcellionis 2.20.6.2.2.027 OTU 1 seq prokMSA_id:085684 AY220545 Parachlamydiaceae cvE5 2.20.6.2.2.028 OTU 1 seq prokMSA_id:089923 AY140911 Fritschea eriococci and 23S genes complete 2.20.6.2.2.999 poor quality 18 seqs prokMSA_id:040825 AB047132 ONG5 prokMSA_id:045392 AB055997 WSB-15 prokMSA_id:075282 AB075102 clone:KSS17 prokMSA_id:002922 AF007665 clone g24. prokMSA_id:002929 AF097184 clone CRG1. prokMSA_id:002928 AF097185 clone CRG2. prokMSA_id:002921 AF097186 clone CRG3. prokMSA_id:002927 AF097191 clone CRG8. prokMSA_id:002926 AF097192 clone CRG9. prokMSA_id:021626 AF146268 SCALE-19 prokMSA_id:068712 AF484051 clone t23 prokMSA_id:068706 AF484059 clone p55 prokMSA_id:050019 AJ308292 clone F99_30 prokMSA_id:069416 AY143737 Parachlamydia sp. clone V38 prokMSA_id:073221 AY144293 Neochlamydia sp. LTUNC08556 prokMSA_id:069982 AY144294 Neochlamydia sp. LTUNC09456 prokMSA_id:072354 AY144295 Neochlamydia sp. LTUNC09656 prokMSA_id:069256 AY144296 Neochlamydia sp. LTUNC02956 2.20.6.2.3 CHLAMYDOPHILA_SUBGROUP 134 seqs 2.20.6.2.3.001 OTU 19 seqs prokMSA_id:052481 AE001273 Chlamydia trachomatis complete genome prokMSA_id:003014 AE001345 Chlamydia trachomatis str. D/UW-3/CX. prokMSA_id:003015 AE001347 Chlamydia trachomatis str. D/UW-3/CX. prokMSA_id:085637 AE002279 Chlamydia muridarum section 11 of 85 of the complete genome prokMSA_id:083720 AE002280 Chlamydia muridarum section 12 of 85 of the complete genome prokMSA_id:003041 D85718 Chlamydia muridarum str. MoPn/Wiess-Nigg. prokMSA_id:003011 D85719 Chlamydia trachomatis str. B/TW-5/OT. prokMSA_id:003012 D85720 Chlamydia trachomatis str. C/TW-3/OT. prokMSA_id:003013 D85721 Chlamydia trachomatis str. D/TW-3/CX. prokMSA_id:002956 D85722 Chlamydia trachomatis str. E/UW-5/Cx. prokMSA_id:003010 D88316 Chlamydia trachomatis str. A.SA-1.OT. prokMSA_id:003009 D89067 Chlamydia trachomatis str. HAR-13. prokMSA_id:049665 E17344 Chlamydia trachomatis A/Har-13T prokMSA_id:019114 E17345 Chlamydia trachomatis MoPn/Weiss-Nigg prokMSA_id:002954 M59178 Chlamydia trachomatis str. 434. prokMSA_id:050790 NC_000117 Chlamydia trachomatis complete genome prokMSA_id:084873 NC_002620 Chlamydia muridarum complete genome prokMSA_id:003042 U68437 Chlamydia muridarum str. SFPD. prokMSA_id:002955 U68443 Chlamydia trachomatis str. L2/434/BU ATCC VR-902B. 2.20.6.2.3.002 OTU 12 seqs prokMSA_id:003034 AB001774 Chlamydia pecorum str. Bo-1485. prokMSA_id:003035 AB001775 Chlamydia pecorum str. Bo-Maeda. prokMSA_id:003036 AB001776 Chlamydia pecorum str. Bo-Yokohama. prokMSA_id:003037 AB001777 Chlamydia pecorum str. SPV789. prokMSA_id:003030 D85714 Chlamydia pecorum str. Bo/Shizuoka. prokMSA_id:003031 D85715 Chlamydia pecorum str. Bo/Maeda. prokMSA_id:003032 D85716 Chlamydophila pecorum str. Ov/IPA ATCC VR629. prokMSA_id:003033 D85717 Chlamydia pecorum str. Koala II. prokMSA_id:003027 D88317 Chlamydophila pecorum str. Bo/E58. prokMSA_id:036991 E17343 Chlamydia pecorum Bo/Maeda prokMSA_id:003028 U73782 Chlamydophila pecorum str. BE. prokMSA_id:003029 U73785 Chlamydophila pecorum str. Bo/E8. 2.20.6.2.3.003 OTU 3 seqs prokMSA_id:003025 U68420 Chlamydia suis str. R22. prokMSA_id:003024 U73110 Chlamydia suis str. S45. prokMSA_id:072345 U73110 Chlamydia suis strain S45 complete ; and 23S 2.20.6.2.3.004 OTU 71 seqs prokMSA_id:002964 AB001778 Chlamydophila psittaci str. 6BC ATCC VR-125 . prokMSA_id:002966 AB001779 Chlamydia psittaci str. Bud-1. prokMSA_id:002967 AB001780 Chlamydia psittaci str. Bud-11F from a budgerigar. prokMSA_id:002968 AB001781 Chlamydia psittaci str. Bud-16F from a budgerigar. prokMSA_id:002969 AB001782 Chlamydia psittaci str. Bud-5695 from a budgerigar. prokMSA_id:003021 AB001783 Chlamydophila abortus str. B577 ATCC VR-656 . prokMSA_id:002970 AB001784 Chlamydia psittaci str. Cal-10 ATCC VR-122. prokMSA_id:002944 AB001785 Chlamydophila felis str. Fe-145. prokMSA_id:002971 AB001786 Chlamydia psittaci str. GCP-1. prokMSA_id:002972 AB001787 Chlamydia psittaci str. Itoh. prokMSA_id:002973 AB001788 Chlamydia psittaci str. Izawa-1 from a budgerigar. prokMSA_id:002974 AB001789 Chlamydia psittaci str. Koala. prokMSA_id:002975 AB001790 Chlamydia psittaci str. Mizuno-1F from a budgerigar. prokMSA_id:002976 AB001791 Chlamydia psittaci str. Ohmiya. prokMSA_id:002977 AB001792 Chlamydia psittaci str. P1015 from a feral pigeon. prokMSA_id:002978 AB001793 Chlamydia psittaci str. P1041 from a feral pigeon. prokMSA_id:002979 AB001794 Chlamydia psittaci str. P1305 from a feral pigeon. prokMSA_id:002980 AB001795 Chlamydia psittaci str. P1307 from a feral pigeon. prokMSA_id:002981 AB001796 Chlamydia psittaci str. P1313 from a feral pigeon. prokMSA_id:002982 AB001797 Chlamydia psittaci str. P1315 from a feral pigeon. prokMSA_id:002983 AB001798 Chlamydia psittaci str. P1321 from a feral pigeon. prokMSA_id:002984 AB001799 Chlamydia psittaci str. P1605 from a feral pigeon. prokMSA_id:002985 AB001800 Chlamydia psittaci str. P1646 from a feral pigeon. prokMSA_id:002986 AB001801 Chlamydia psittaci str. P1888 from a feral pigeon. prokMSA_id:002987 AB001802 Chlamydia psittaci str. PgAu46. prokMSA_id:002988 AB001803 Chlamydophila psittaci PCM 131. prokMSA_id:002989 AB001804 Chlamydia psittaci PCM 27. prokMSA_id:002990 AB001805 Chlamydia psittaci PCM 30. prokMSA_id:002991 AB001806 Chlamydia psittaci PCM 44. prokMSA_id:002992 AB001807 Chlamydia psittaci PCM 55. prokMSA_id:002993 AB001808 Chlamydia psittaci PCM 9. prokMSA_id:002961 AB001809 Chlamydia psittaci str. Prk46. prokMSA_id:002962 AB001810 Chlamydia psittaci str. Prk48. prokMSA_id:002963 AB001811 Chlamydia psittaci str. Prk49. prokMSA_id:002994 AB001812 Chlamydia psittaci str. Sugimoto-F from a cockatiel. prokMSA_id:002995 AB001813 Chlamydia psittaci str. Sugawara from a budgerigar. prokMSA_id:002996 AB001814 Chlamydia psittaci str. T3. prokMSA_id:002997 AB001815 Chlamydia psittaci str. T4. prokMSA_id:002998 AB001816 Chlamydia psittaci str. Tk-Cal. prokMSA_id:085110 AE016997 Chlamydophila caviae GPIC section 4 of 4 of the complete genome prokMSA_id:090524 AY334528 Chlamydophila psittaci clone cvCps4 prokMSA_id:090417 AY334529 Chlamydophila psittaci clone cvCps3 prokMSA_id:089482 AY334530 Chlamydophila psittaci clone cvCps2 prokMSA_id:090469 AY334531 Chlamydophila psittaci clone cvCps1 prokMSA_id:089095 AY334532 Chlamydophila felis clone cvCfe1 prokMSA_id:088211 AY334533 Chlamydophila felis clone cvCfe2 prokMSA_id:089457 AY334534 Chlamydophila felis clone cvCfe3 prokMSA_id:002937 D85701 Chlamydophila felis str. Fe/Pn-1 ATCC VR120 . prokMSA_id:002938 D85702 Chlamydophila felis str. Fe/145. prokMSA_id:002939 D85703 Chlamydophila felis str. Fe/B166. prokMSA_id:002940 D85704 Chlamydophila felis str. Fe/C164. prokMSA_id:002941 D85705 Chlamydophila felis str. Fe/C454. prokMSA_id:002942 D85706 Chlamydophila felis str. Fe/Cello. prokMSA_id:002943 D85707 Chlamydophila felis str. Fe/C429. prokMSA_id:003002 D85708 Chlamydophila caviae str. Gp/Ic; GPIC ATCC VR813 . prokMSA_id:002959 D85709 Chlamydophila abortus str. Ov/B577 ATCC VR-656 . prokMSA_id:002960 D85710 Chlamydia psittaci str. Prk/Daruma. prokMSA_id:002965 D85711 Chlamydia psittaci str. Hu/Borg ATCC VR601. prokMSA_id:003017 D85712 Chlamydia psittaci str. Frt-Hu/Ca110. prokMSA_id:003018 D85713 Chlamydia psittaci str. Prt/GCP-1. prokMSA_id:044021 E17339 Chlamydia psittaci Prt/GCP1 prokMSA_id:036508 E17340 Chlamydia psittaci Prk/Daruma prokMSA_id:025134 E17341 Chlamydia psittaci Gp/Ic prokMSA_id:020912 E17342 Chlamydia psittaci Fe/Pn-1 prokMSA_id:003016 M13769 Chlamydophila psittaci str. 6BC ATCC VR-125 . prokMSA_id:083486 NC_003361 Chlamydophila caviae GPIC complete genome prokMSA_id:003019 U68419 Chlamydophila psittaci str. turkey strain NJ1; Tk-NJ. prokMSA_id:070709 U68447 Chlamydophila psittaci strain 6BC and 23S operon complete prokMSA_id:003022 U76710 Chlamydophila abortus str. EBA. prokMSA_id:003001 Z49871 Chlamydophila psittaci. prokMSA_id:002946 Z49872 Chlamydophila psittaci. 2.20.6.2.3.005 OTU 11 seqs prokMSA_id:003007 AE001668 Chlamydophila pneumoniae str. CWL029. prokMSA_id:090574 AE017160 Chlamydophila pneumoniae TW-183 section 4 of 4 of the complete genome prokMSA_id:002951 AF139200 Chlamydophila Chlamyophila cf. pneumoniae CPXT1 str. CPXT1. prokMSA_id:002948 L06108 Chlamydophila pneumoniae str. TW-183. prokMSA_id:049993 NC_000922 Chlamydophila pneumoniae CWL029 complete genome prokMSA_id:002958 S56213 Chlamydophila pneumoniae. prokMSA_id:002952 U68426 Chlamydophila pneumoniae str. N16. prokMSA_id:002949 U73783 Chlamydophila pneumoniae str. P1Parola. prokMSA_id:002945 U73784 Chlamydophila pneumoniae str. N16. prokMSA_id:003006 Z49873 Chlamydophila pneumoniae. prokMSA_id:003008 Z49874 Chlamydophila pneumoniae. 2.20.6.2.3.006 OTU 1 seq prokMSA_id:025273 AF364568 Chlamydiales clone P-6 2.20.6.2.3.007 OTU 1 seq prokMSA_id:066705 AF478473 Parachlamydiaceae cvC15 2.20.6.2.3.999 poor quality 16 seqs prokMSA_id:002950 AF100957 Chlamydophila pneumoniae str. LPConU. prokMSA_id:002953 AF102832 Chlamydophila pneumoniae str. Frog-Mi-l. prokMSA_id:027186 AJ301573 alpha GR-371.III.105 prokMSA_id:002957 M83313 Chlamydia muridarum str. SFPD. prokMSA_id:003023 U61766 Chlamydophila abortus str. S26/3. prokMSA_id:002999 U61767 Chlamydophila psittaci str. pigeon. prokMSA_id:003003 U61768 Chlamydophila caviae str. GPIC-guinea pig inclusion conjunctivitis. prokMSA_id:003038 U61769 Chlamydophila pecorum str. W73 ovine enteric. prokMSA_id:003039 U61770 Chlamydophila pecorum str. VR628 bovine encephalomyelitis. prokMSA_id:003040 U68434 str. IPAIowa polyarthritis ATCC VR-629. prokMSA_id:003026 U68436 Chlamydia muridarum str. MoPn. prokMSA_id:003020 U68438 Chlamydia trachomatis str. A/Har-13. prokMSA_id:003000 U68447 Chlamydophila psittaci str. 6BC ATCC VR-125 . prokMSA_id:003004 U68451 str. GPIC ATCC VR-813. prokMSA_id:003005 U68457 Chlamydophila felis str. strain VR-120 ATCC VR-120. prokMSA_id:002947 U76711 Chlamydophila pneumoniae str. TW-183. 2.20.7 MOUNT_COOT-THA_ENVIRONMENTAL_CLONES_II 74 seqs 2.20.7.001 OTU 1 seq prokMSA_id:003047 X97112 clone TM5. 2.20.7.002 OTU 1 seq prokMSA_id:003046 X64374 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.20.7.003 OTU 1 seq prokMSA_id:003044 X64381 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.20.7.004 OTU 1 seq prokMSA_id:003045 X64382 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.20.7.005 OTU 1 seq prokMSA_id:003043 X64380 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.20.7.006 OTU 1 seq prokMSA_id:023308 AF445139 clone Tc79 2.20.7.007 OTU 2 seqs prokMSA_id:025369 AF445101 clone Tc33 prokMSA_id:084908 AY242816 soil clone TcA24 2.20.7.008 OTU 1 seq prokMSA_id:028475 AJ252611 Agricultural soil clone SC-I-7 2.20.7.009 OTU 1 seq prokMSA_id:032593 AY028219 Verrucomicrobia Arctic97B-4 2.20.7.010 OTU 1 seq prokMSA_id:043121 AJ401123 verrucomicrobium DEV031 clone DEV031 2.20.7.011 OTU 1 seq prokMSA_id:045324 AF145830 Metal-contaminated soil clone K20-32 2.20.7.012 OTU 1 seq prokMSA_id:049106 AF271315 planctomycete clone2 2.20.7.013 OTU 1 seq prokMSA_id:078943 AJ536867 clone JG30-KF-C12 2.20.7.014 OTU 1 seq prokMSA_id:079710 AY192326 Verrucomicrobia clone W1-2C 2.20.7.015 OTU 1 seq prokMSA_id:083272 AY214847 Verrucomicrobia clone BB-2-E10F 2.20.7.016 OTU 1 seq prokMSA_id:083412 AY214606 Verrucomicrobia clone SL2-1-H10 2.20.7.017 OTU 1 seq prokMSA_id:088530 AJ577294 Verrucomicrobium sp. clone 11 2.20.7.999 poor quality 56 seqs prokMSA_id:042314 AF107497 SY1-3 prokMSA_id:019512 AF128701 soil S0164 prokMSA_id:018117 AF141541 Verrucomicrobiales clone CRE-PA73 prokMSA_id:044332 AF337838 copper smeltery D69 prokMSA_id:049729 AF358016 clone LO13.23 prokMSA_id:029487 AF395072 clone 16S1 prokMSA_id:075360 AF431583 Verrucomicrobia clone C16.16WL prokMSA_id:075804 AF431592 Verrucomicrobia clone C31.18SM prokMSA_id:076519 AF431599 Verrucomicrobia clone N42.59PG prokMSA_id:061210 AF432692 clone SMS9.36WL prokMSA_id:076118 AF432705 clone N12.38WL prokMSA_id:017391 AF445150 clone Tc92 prokMSA_id:021494 AF445152 clone Tc95 prokMSA_id:070783 AJ416176 clone Sta2-35 prokMSA_id:073470 AJ437465 clone 1_32_415 prokMSA_id:057252 AJ518242 clone Mul2P2-40 prokMSA_id:057223 AJ518278 clone Mul2P3-23 prokMSA_id:057076 AJ518467 clone Neu4P3-9 prokMSA_id:056415 AJ518704 clone Sai4P1-90 prokMSA_id:061495 AY043725 Verrucomicrobia clone NOW2.18WL prokMSA_id:061492 AY043726 Verrucomicrobia clone NOS7.103WL prokMSA_id:061336 AY043912 Verrucomicrobia clone NMW3.115WL prokMSA_id:061335 AY043913 Verrucomicrobia clone NMW3.116WL prokMSA_id:056419 AY043918 Verrucomicrobia clone NMW3.15WL prokMSA_id:056058 AY043919 Verrucomicrobia clone NMW3.173WL prokMSA_id:056499 AY043922 Verrucomicrobia clone NMW3.207WL prokMSA_id:061325 AY043926 Verrucomicrobia clone SMW4.116WL prokMSA_id:061327 AY043927 Verrucomicrobia clone SMW4.127WL prokMSA_id:061323 AY043929 Verrucomicrobia clone SMW4.38WL prokMSA_id:061317 AY043935 Verrucomicrobia clone NMS8.8WL prokMSA_id:061316 AY043936 Verrucomicrobia clone NMS8.95WL prokMSA_id:056097 AY043937 Verrucomicrobia clone NMS8.96WL prokMSA_id:061315 AY043939 Verrucomicrobia clone SMS9.11WL prokMSA_id:061314 AY043941 Verrucomicrobia clone SMS9.131WL prokMSA_id:061311 AY043945 Verrucomicrobia clone SMS9.27WL prokMSA_id:055249 AY043947 Verrucomicrobia clone SMS9.68WL prokMSA_id:061309 AY043948 Verrucomicrobia clone SMS9.72WL prokMSA_id:079719 AY192327 Verrucomicrobia clone W1-1D prokMSA_id:079950 AY192329 Verrucomicrobia clone W1-3B prokMSA_id:080017 AY192337 Verrucomicrobia clone P2-8H prokMSA_id:079741 AY192347 Verrucomicrobia clone S2-11G prokMSA_id:080398 AY192348 Verrucomicrobia clone S3-1A prokMSA_id:080465 AY192349 Verrucomicrobia clone S3-1B prokMSA_id:080888 AY192352 Verrucomicrobia clone S3-2F prokMSA_id:080192 AY192353 Verrucomicrobia clone S3-2H prokMSA_id:079845 AY192354 Verrucomicrobia clone S3-3G prokMSA_id:080548 AY192355 Verrucomicrobia clone S3-4G prokMSA_id:086350 AY214604 Verrucomicrobia clone SL2-1-H3 prokMSA_id:085758 AY214754 Verrucomicrobia clone BB-1-F2 prokMSA_id:084118 AY214790 Verrucomicrobia clone BB-1-A8 prokMSA_id:083867 AY214803 Verrucomicrobia clone BB-2-F3R prokMSA_id:083421 AY214910 Verrucomicrobia clone BAC-P37-1A prokMSA_id:084076 AY214911 Verrucomicrobia clone BAC-P109-1F prokMSA_id:093774 AY364070 clone cRI35d prokMSA_id:095606 AY395210 clone M18K prokMSA_id:073920 U85173 clone ACK-M10 2.21 CYANOBACTERIA_AND_CHLOROPLASTS 3225 seqs 2.21.1 CYANOBACTERIA 2125 seqs 2.21.1.1 OSCILLATORIA_GROUP 386 seqs 2.21.1.1.001 OTU 1 seq prokMSA_id:003082 X58359 "Oscillatoria williamsii" PCC 7105. 2.21.1.1.002 OTU 78 seqs prokMSA_id:058497 AB045896 Planktothrix agardhii starin:CCAP 1459/11A prokMSA_id:058496 AB045898 Planktothrix agardhii strain: CCAP 1459/15 prokMSA_id:058494 AB045899 Planktothrix agardhii strain: CCAP 1459/16 prokMSA_id:056079 AB045900 Planktothrix agardhii strain: CCAP 1459/21 prokMSA_id:058493 AB045901 Planktothrix rubescens strain: CCAP 1459/22 prokMSA_id:058492 AB045902 Planktothrix agardhii strain: CCAP 1459/23 prokMSA_id:058495 AB045903 Planktothrix agardhii strain: CCAP 1459/36 prokMSA_id:055938 AB045904 Planktothrix agardhii strain: C1-12 prokMSA_id:058490 AB045907 Planktothrix pseudagardhii strain: CW4-5 prokMSA_id:058489 AB045908 Planktothrix agardhii strain: NIVA CYA 105 prokMSA_id:058488 AB045909 Planktothrix rubescens strain: NIVA CYA 108 prokMSA_id:058487 AB045910 Planktothrix agardhii strain: NIVA CYA 10 prokMSA_id:058486 AB045911 Planktothrix agardhii strain: NIVA CYA 116 prokMSA_id:058485 AB045912 Planktothrix agardhii strain: NIVA CYA 117/3 prokMSA_id:058483 AB045913 Planktothrix agardhii strain: NIVA CYA 11 prokMSA_id:058484 AB045914 Planktothrix agardhii strain: NIVA CYA 126 prokMSA_id:058482 AB045915 Planktothrix agardhii strain: NIVA CYA 127 prokMSA_id:058481 AB045916 Planktothrix rubescens strain: NIVA CYA 128 prokMSA_id:058480 AB045917 Planktothrix rubescens strain: NIVA CYA 129 prokMSA_id:058479 AB045918 Planktothrix agardhii strain: NIVA CYA 133 prokMSA_id:058478 AB045919 Planktothrix agardhii strain: NIVA CYA 137 prokMSA_id:058476 AB045920 Planktothrix rubescens strain: NIVA CYA 13 prokMSA_id:058477 AB045921 Planktothrix rubescens strain: NIVA CYA 151 prokMSA_id:058475 AB045922 Planktothrix pseudagardhii strain: NIVA CYA 153 prokMSA_id:058473 AB045923 Planktothrix agardhii strain: NIVA CYA 15 prokMSA_id:058474 AB045924 Planktothrix agardhii strain: NIVA CYA 168 prokMSA_id:058472 AB045925 Planktothrix rubescens strain: NIVA CYA 18 prokMSA_id:058471 AB045926 Planktothrix rubescens strain: NIVA CYA 1 prokMSA_id:058470 AB045927 Planktothrix agardhii strain: NIVA CYA 21 prokMSA_id:058468 AB045928 Planktothrix agardhii strain: NIVA CYA 229 prokMSA_id:058467 AB045930 Planktothrix agardhii strain: NIVA CYA 297 prokMSA_id:058466 AB045931 Planktothrix agardhii strain: NIVA CYA 29 prokMSA_id:058465 AB045932 Planktothrix agardhii strain: NIVA CYA 30 prokMSA_id:058464 AB045933 Planktothrix agardhii strain: NIVA CYA 313 prokMSA_id:058463 AB045934 Planktothrix rubescens strain: NIVA CYA 320 prokMSA_id:058461 AB045935 Planktothrix agardhii strain: NIVA CYA 34 prokMSA_id:058462 AB045936 Planktothrix rubescens strain: NIVA CYA 35 prokMSA_id:058459 AB045937 Planktothrix rubescens strain: NIVA CYA 55 prokMSA_id:058460 AB045938 Planktothrix agardhii strain: NIVA CYA 56/3 prokMSA_id:058457 AB045939 Planktothrix agardhii strain: NIVA CYA 59 prokMSA_id:058455 AB045940 Planktothrix agardhii strain: NIVA CYA 61/1 prokMSA_id:058456 AB045941 Planktothrix agardhii strain: NIVA CYA 64/6 prokMSA_id:058458 AB045942 Planktothrix agardhii strain: NIVA CYA 65 prokMSA_id:055281 AB045943 Planktothrix agardhii strain: NIVA CYA 68 prokMSA_id:058454 AB045944 Planktothrix rubescens strain: NIVA CYA 73 prokMSA_id:058453 AB045945 Planktothrix rubescens strain: NIVA CYA 85 prokMSA_id:058452 AB045946 Planktothrix rubescens strain: NIVA CYA 87 prokMSA_id:058449 AB045947 Planktothrix agardhii strain: NIVA CYA 88/3 prokMSA_id:058447 AB045948 Planktothrix rubescens strain: NIVA CYA 90 prokMSA_id:058446 AB045949 Planktothrix agardhii strain: NIVA CYA 91 prokMSA_id:058451 AB045950 Planktothrix rubescens strain: NIVA CYA 97/5 prokMSA_id:058450 AB045951 Planktothrix rubescens strain: NIVA CYA 98 prokMSA_id:058448 AB045952 Planktothrix agardhii strain: NIVA CYA 9 prokMSA_id:058444 AB045954 Planktothrix agardhii strain: NIES 204 prokMSA_id:058443 AB045955 Planktothrix agardhii strain: NIES 205 prokMSA_id:058442 AB045956 Planktothrix agardhii strain: NIES 594 prokMSA_id:058441 AB045957 Planktothrix agardhii strain: NIES 595 prokMSA_id:058440 AB045958 Planktothrix agardhii strain: NIES 596 prokMSA_id:058438 AB045959 Planktothrix rubescens strain: NIES 610 prokMSA_id:056026 AB045965 Planktothrix pseudagardhii strain: T19-6'-6 prokMSA_id:055562 AB045966 Planktothrix pseudagardhii strain: T19-6'-8 prokMSA_id:058432 AB045968 Planktothrix pseudagardhii strain: T1-8-4 prokMSA_id:058433 AB045969 Planktothrix mougeotii strain: TK4-5 prokMSA_id:058431 AB045970 Planktothrix mougeotii strain: TK5-1 prokMSA_id:055697 AB045971 Planktothrix mougeotii strain: TR1-5 prokMSA_id:058430 AB045972 Planktothrix mougeotii strain: TR2-4 prokMSA_id:080934 AB074507 Oscillatoria agardhii prokMSA_id:003074 AJ006284 str. watersample from Lake Loosdrecht. prokMSA_id:003071 AJ132250 Planktothrix rubescens str. BC-Pla 9401. prokMSA_id:003072 AJ132251 Planktothrix rubescens str. BC-Pla 9303. prokMSA_id:003073 AJ132252 Planktothrix rubescens str. BC-Pla 9316. prokMSA_id:048691 AJ133165 Oscillatoria sp. strain 28 prokMSA_id:033534 AJ133166 Oscillatoria sp. strain CYA126 prokMSA_id:016819 AJ133167 Oscillatoria sp. strain 49 prokMSA_id:073793 AJ133168 Oscillatoria sp. strain CYA127 prokMSA_id:025778 AJ133169 Oscillatoria sp. strain CYA128/R prokMSA_id:072966 AJ133185 Oscillatoria sp. strain 2 prokMSA_id:003066 X84811 "Oscillatoria agardhii" str. CYA 18. 2.21.1.1.003 OTU 2 seqs prokMSA_id:003065 AF170762 clone QSSC8L-2. prokMSA_id:025253 AF170775 cyanobacterium QSSC8L-15 2.21.1.1.005 OTU 19 seqs prokMSA_id:074834 AB075801 prokMSA_id:003060 AF132772 Synechococcus ATCC700243 str. C1 ATCC 700243. prokMSA_id:040063 AF216942 Synechococcus PCC6716 prokMSA_id:054965 AF216943 Synechococcus PCC6717 prokMSA_id:071218 AF285244 Synechococcus sp. OH5 prokMSA_id:069787 AF285245 Synechococcus sp. OH9 prokMSA_id:073795 AF285246 Synechococcus sp. OH10 prokMSA_id:070371 AF285247 Synechococcus sp. OH13 prokMSA_id:073833 AF285248 Synechococcus sp. OH14 prokMSA_id:072806 AF285249 Synechococcus sp. OH18 prokMSA_id:069991 AF285250 Synechococcus sp. OH12 prokMSA_id:070326 AF285251 Synechococcus sp. OH16 prokMSA_id:072283 AF285252 Synechococcus sp. OH19 prokMSA_id:074446 AF285253 Synechococcus sp. OH26 prokMSA_id:070167 AF317509 Synechococcus sp. SH-94-45 prokMSA_id:016817 AF399870 Synechococcus sp. OLI-05 prokMSA_id:061266 AP005376 Thermosynechococcus elongatus BP-1 complete genome section 8/9 prokMSA_id:003063 D83715 Synechococcus elongatus. prokMSA_id:055947 NC_004113 Thermosynechococcus elongatus BP-1 complete genome 2.21.1.1.007 OTU 14 seqs prokMSA_id:040937 AB039013 Lyngbya aestuarii prokMSA_id:058491 AB045906 Lyngbya hieronymusii var. hieronymusii strain: CN4-3 prokMSA_id:080667 AB074508 Spirulina platensis prokMSA_id:049980 AF260509 Arthrospira maxima prokMSA_id:035094 AF260510 Arthrospira fusiformis prokMSA_id:069039 AF329391 Arthrospira sp. FACHB439 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:069038 AF329392 Arthrospira sp. FACHB438 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:055271 AF329393 Arthrospira sp. OUQDS6 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:043562 AF337650 Lyngbya hieronymusii prokMSA_id:003064 AJ000714 Lyngbya confervoides PCC 7419. prokMSA_id:070913 X70769 Arthrospira sp. strain PCC8005 prokMSA_id:003059 X70769 Arthrospira sp. PCC 8005. prokMSA_id:003062 X75044 Arthrospira sp. PCC 7345. prokMSA_id:071484 X75044 Arthrospira sp. genes tRNA-Ile tRNA-Ala 23S 2.21.1.1.009 OTU 1 seq prokMSA_id:016643 AF284808 Microcoleus sociatus SAG 2692 2.21.1.1.011 OTU 5 seqs prokMSA_id:058445 AB045953 Planktothricoides raciborskii strain: INBaOR prokMSA_id:058439 AB045960 Planktothricoides raciborskii strain: NIES 207 prokMSA_id:058434 AB045963 Planktothricoides raciborskii strain: NSLA4 prokMSA_id:058435 AB045964 Planktothricoides raciborskii strain: OR1-1 prokMSA_id:056232 AB045967 Planktothricoides raciborskii strain: T1-6-2 2.21.1.1.012 OTU 6 seqs prokMSA_id:026990 AB039014 Oscillatoria acuminata prokMSA_id:049230 AF218375 Oscillatoria priestleyii prokMSA_id:037596 AF263332 Phormidium sp. Ant-Brack-3 prokMSA_id:020614 AF263334 Oscillatoria sp. Ant-G17 prokMSA_id:032704 AF263337 Oscillatoria sp. Ant-Salt prokMSA_id:051758 AJ431339 cyanobacterium isolate ikaite un-c15 2.21.1.1.013 OTU 2 seqs prokMSA_id:024354 AF230967 Oscillatoria sp. 3-SLR7 prokMSA_id:037748 AF268490 Oscillatoria cf. laetevirens Baja-Osc-1 2.21.1.1.014 OTU 1 seq prokMSA_id:025443 AB039010 Geitlerinema PCC7105 2.21.1.1.017 OTU 1 seq prokMSA_id:035777 AF337654 Oscillatoria sp. KCTC AG10184 2.21.1.1.018 OTU 1 seq prokMSA_id:036764 AF445719 cyanobacterium clone SM2C12 2.21.1.1.019 OTU 3 seqs prokMSA_id:058155 AF544207 Rumen YS2 prokMSA_id:084893 AY244880 rumen clone BF2 prokMSA_id:085761 AY244890 rumen clone BF12 2.21.1.1.022 OTU 73 seqs prokMSA_id:047726 AB039015 Oscillatoria sancta prokMSA_id:080595 AB074509 Oscillatoria sp. PCC 7112 prokMSA_id:003055 AF013027 Trichodesmium thiebautii. prokMSA_id:003054 AF013028 Trichodesmium contortum. prokMSA_id:003053 AF013029 Trichodesmium tenue. prokMSA_id:003052 AF013030 Trichodesmium erythraeum. prokMSA_id:003051 AF091321 Trichodesmium thiebautii str. puff. prokMSA_id:003050 AF091322 Trichodesmium hildebrandtii str. puff. prokMSA_id:074791 AF132933 Oscillatoria sancta prokMSA_id:051024 AF218373 Phormidium subfuscum prokMSA_id:050986 AF263333 Oscillatoria sp. Ant-G16 prokMSA_id:033052 AF263338 Oscillatoria sp. E17 prokMSA_id:050545 AF263341 Phormidium sp. Ant-Skua prokMSA_id:034024 AF284803 Microcoleus vaginatus PCC 9802 prokMSA_id:036107 AF284804 Microcoleus vaginatus MPI 98MVBR04 prokMSA_id:044341 AF337649 Oscillatoria princeps prokMSA_id:050361 AF337653 Oscillatoria limosa prokMSA_id:048447 AF355338 Microcoleus vaginatus isolate TAA1-4 clone 149-1A prokMSA_id:039629 AF355339 Microcoleus vaginatus isolate TAA1-4 clone 149-1B prokMSA_id:023674 AF355340 Microcoleus vaginatus isolate BSA-1a clone 149-4A prokMSA_id:035753 AF355341 Microcoleus vaginatus isolate BSA-1a clone 149-4B prokMSA_id:034234 AF355342 Microcoleus vaginatus isolate OTA3-2 clone 150-6A prokMSA_id:037928 AF355343 Microcoleus vaginatus isolate OTA3-2 clone 150-6B prokMSA_id:038106 AF355344 Microcoleus vaginatus isolate DCSD-1 clone 151-3A prokMSA_id:024788 AF355345 Microcoleus vaginatus isolate DCSD-1 clone 151-3B prokMSA_id:031870 AF355346 Microcoleus vaginatus isolate DSD5-1 clone 148-1B prokMSA_id:046963 AF355347 Microcoleus vaginatus isolate DSD5-1 clone 148-1C prokMSA_id:031325 AF355348 Microcoleus vaginatus isolate DSD5-1 clone 148-1D prokMSA_id:041540 AF355349 Microcoleus vaginatus isolate OTA2-1 clone 152-1B prokMSA_id:021934 AF355350 Microcoleus vaginatus isolate FI5-MC4 clone 182-1A prokMSA_id:026930 AF355351 Microcoleus vaginatus isolate EM1-B1-C4 clone 194-3B prokMSA_id:030784 AF355352 Microcoleus vaginatus isolate FI5-MC4 clone 182-1B prokMSA_id:019306 AF355353 Microcoleus vaginatus isolate FB2-MC1 prokMSA_id:033451 AF355354 Microcoleus vaginatus isolate EM1-B1-C4 clone 194-3A prokMSA_id:019944 AF355355 Microcoleus vaginatus isolate CSV2-MC1 clone 178-7A prokMSA_id:034069 AF355356 Microcoleus vaginatus isolate CSV2-MC1 clone 178-7B prokMSA_id:050864 AF355357 Microcoleus vaginatus isolate EM3-J1 clone 178-6B prokMSA_id:030661 AF355358 Microcoleus vaginatus isolate MOA4-MC3 clone 177-3A prokMSA_id:025182 AF355359 Microcoleus vaginatus isolate MOA4-MC3 clone 177-3B prokMSA_id:028100 AF355360 Microcoleus vaginatus isolate SEV2-MC1 clone 184-1B prokMSA_id:017401 AF355361 Microcoleus vaginatus isolate EM3-J1 clone 178-6A prokMSA_id:039201 AF355362 Microcoleus vaginatus isolate SEV2-MC1 clone 184-1A prokMSA_id:050591 AF355363 Microcoleus vaginatus isolate WD1-MC2 clone 194-4A prokMSA_id:052871 AF355365 Microcoleus vaginatus isolate MER1-MC1 clone 178-3B prokMSA_id:049496 AF355366 Microcoleus vaginatus isolate MER1-MC1 clone 178-3A prokMSA_id:036104 AF355367 Microcoleus vaginatus isolate FB1-MC1 clone 177-6A prokMSA_id:027182 AF355368 Microcoleus vaginatus isolate FB1-MC1 clone 177-6B prokMSA_id:041843 AF355369 Microcoleus vaginatus isolate FB2-MC3 clone 187-1A prokMSA_id:039500 AF355370 Microcoleus vaginatus isolate USPCI-1 clone 151-6A prokMSA_id:035090 AF355371 Microcoleus vaginatus isolate MOA4-1 clone 148-3A prokMSA_id:037449 AF355372 Microcoleus vaginatus isolate MOA4-MC1 clone 177-3B prokMSA_id:038540 AF355373 Microcoleus vaginatus isolate OTA3-2 clone 148-4B prokMSA_id:037931 AF355374 Microcoleus vaginatus isolate MOA4-1 clone 148-3B prokMSA_id:067881 AF355397 Microcoleus steenstrupii clone 150-3A prokMSA_id:087045 AF510963 Lyngbya majuscula isolate 2 prokMSA_id:087562 AF510964 Lyngbya majuscula isolate 3 prokMSA_id:087558 AF510965 Lyngbya majuscula isolate 2 prokMSA_id:086714 AF510966 Lyngbya majuscula isolate 3 prokMSA_id:087809 AF510967 Lyngbya majuscula isolate 2 prokMSA_id:087837 AF510968 Lyngbya majuscula isolate 3 prokMSA_id:087208 AF510973 Lyngbya majuscula prokMSA_id:087576 AF510974 Lyngbya majuscula isolate 1 prokMSA_id:086830 AF510975 Lyngbya majuscula isolate 1 prokMSA_id:086842 AF510976 Lyngbya majuscula isolate 1 prokMSA_id:087602 AF510980 Lyngbya confervoides prokMSA_id:087926 AF510982 Lyngbya semiplena prokMSA_id:059107 AF518770 Trichodesmium havanum str. F34-5 prokMSA_id:066477 AY100615 clone cvf74060 prokMSA_id:061796 AY123040 cyanobacterium clone PNG-50 prokMSA_id:094750 AY151721 Antarctic cyanobacterium clone BGC-Fr032 complete prokMSA_id:094381 AY151743 Antarctic cyanobacterium clone BGC-Fr025 prokMSA_id:094358 AY151748 Antarctic cyanobacterium clone BGC-Fr068 prokMSA_id:003048 X70767 Trichodesmium sp. NIBB 1067. 2.21.1.1.023 OTU 1 seq prokMSA_id:062920 AF448081 Synechococcus sp. PCC 6312 2.21.1.1.024 OTU 2 seqs prokMSA_id:067883 AF355395 Microcoleus steenstrupii clone 177-7A prokMSA_id:067884 AF355396 Microcoleus steenstrupii clone 177-7B 2.21.1.1.025 OTU 1 seq prokMSA_id:071748 Y18793 Spirulina sp. strain CCC Snake P. Y-85 2.21.1.1.026 OTU 1 seq prokMSA_id:075533 AY168749 clone HC-61 2.21.1.1.027 OTU 1 seq prokMSA_id:076608 AY153460 cyanobacterium isolate clone3-6 2.21.1.1.028 OTU 1 seq prokMSA_id:076769 AY153461 cyanobacterium isolate clone3-10 2.21.1.1.029 OTU 1 seq prokMSA_id:077762 AB089123 clone:Rs-H34 2.21.1.1.030 OTU 1 seq prokMSA_id:082269 AJ548503 Phormidium sp. ETS-05 isolate ETS-05 2.21.1.1.031 OTU 2 seqs prokMSA_id:088646 AY327199 clone ZB118 prokMSA_id:090331 AY327204 clone ZB127 2.21.1.1.032 OTU 1 seq prokMSA_id:093193 AY239603 Leptolyngbya sp. CNP1-B1-4 2.21.1.1.033 OTU 1 seq prokMSA_id:096273 AY422693 Chroococcidiopsis sp. 'Bad Sachsa_BSC-16-C' 2.21.1.1.999 poor quality 166 seqs prokMSA_id:031871 AF218369 Lyngbya sp. UTCC313 prokMSA_id:043803 AF230966 Oscillatoria sp. 1-SLR2 prokMSA_id:035422 AF263331 Phormidium sp. Ant-Brack-2 prokMSA_id:029840 AF263340 Oscillatoria sp. Ant-Pancreas prokMSA_id:024336 AF266665 cyanobacterium prokMSA_id:040135 AF284792 Microcoleus vaginatus prokMSA_id:034064 AF284797 cyanobacterium DGGE band 7a prokMSA_id:043396 AF284802 Oscillatoriacean cyanobacterium prokMSA_id:036482 AF345900 Synechococcus sp. prokMSA_id:030547 AF350246 Synechococcus sp. prokMSA_id:037084 AF355364 Microcoleus vaginatus isolate WD1-MC2 clone 194-4B prokMSA_id:068091 AF365651 clone BM89DS6B6 prokMSA_id:067925 AF365850 clone BT60PA10BF4 prokMSA_id:029383 AF368300 Lyngbya majuscula prokMSA_id:039462 AF410933 Geitlerinema sp. CR109510-2 prokMSA_id:026502 AF428479 soil crust cyanobacterium clone moss3 prokMSA_id:016704 AF428480 soil crust cyanobacterium clone moss4 prokMSA_id:047838 AF428481 soil crust cyanobacterium clone moss5 prokMSA_id:030379 AF428482 soil crust cyanobacterium clone moss6 prokMSA_id:045500 AF428483 soil crust cyanobacterium clone moss7 prokMSA_id:017246 AF428484 soil crust cyanobacterium clone moss8 prokMSA_id:031153 AF428485 soil crust cyanobacterium clone moss10 prokMSA_id:024105 AF428486 soil crust cyanobacterium clone moss11 prokMSA_id:043809 AF428487 soil crust cyanobacterium clone moss12 prokMSA_id:028526 AF428488 soil crust cyanobacterium clone moss14 prokMSA_id:023845 AF428489 soil crust cyanobacterium clone moss15 prokMSA_id:045241 AF428490 soil crust cyanobacterium clone moss16 prokMSA_id:036630 AF428491 soil crust cyanobacterium clone moss17 prokMSA_id:050408 AF428492 soil crust cyanobacterium clone moss18 prokMSA_id:017140 AF428493 soil crust cyanobacterium clone moss19 prokMSA_id:036083 AF428494 soil crust cyanobacterium clone moss20 prokMSA_id:016281 AF428495 soil crust cyanobacterium clone moss21 prokMSA_id:044960 AF428496 soil crust cyanobacterium clone moss24 prokMSA_id:043683 AF428497 soil crust cyanobacterium clone moss25 prokMSA_id:030275 AF428498 soil crust cyanobacterium clone moss26 prokMSA_id:036931 AF428499 soil crust cyanobacterium clone moss27 prokMSA_id:019006 AF428500 soil crust cyanobacterium clone moss28 prokMSA_id:019067 AF428501 soil crust cyanobacterium clone moss29 prokMSA_id:018234 AF428502 soil crust cyanobacterium clone moss30 prokMSA_id:018215 AF428503 soil crust cyanobacterium clone moss32 prokMSA_id:026322 AF428504 soil crust cyanobacterium clone moss34 prokMSA_id:032265 AF428505 soil crust cyanobacterium clone moss36 prokMSA_id:039353 AF428506 soil crust cyanobacterium clone moss37 prokMSA_id:031477 AF428507 soil crust cyanobacterium clone lichen1 prokMSA_id:052434 AF428510 soil crust cyanobacterium clone lichen4 prokMSA_id:038644 AF428514 soil crust cyanobacterium clone lichen8 prokMSA_id:054892 AF428516 soil crust cyanobacterium clone lichen10 prokMSA_id:032672 AF428517 soil crust cyanobacterium clone lichen11 prokMSA_id:028417 AF428518 soil crust cyanobacterium clone lichen12 prokMSA_id:028396 AF428534 soil crust cyanobacterium clone lichen28 prokMSA_id:043040 AF428539 soil crust cyanobacterium clone lichen33 prokMSA_id:030322 AF428543 soil crust cyanobacterium clone cyano1 prokMSA_id:018500 AF428544 soil crust cyanobacterium clone cyano2 prokMSA_id:042793 AF428545 soil crust cyanobacterium clone cyano3 prokMSA_id:040044 AF428546 soil crust cyanobacterium clone cyano4 prokMSA_id:025365 AF428547 soil crust cyanobacterium clone cyano5 prokMSA_id:020605 AF428548 soil crust cyanobacterium clone cyano6 prokMSA_id:021982 AF428549 soil crust cyanobacterium clone cyano7 prokMSA_id:043954 AF428550 soil crust cyanobacterium clone cyano8 prokMSA_id:051151 AF428552 soil crust cyanobacterium clone cyano10 prokMSA_id:033084 AF428553 soil crust cyanobacterium clone cyano11 prokMSA_id:047675 AF428555 soil crust cyanobacterium clone cyano13 prokMSA_id:023917 AF428556 soil crust cyanobacterium clone cyano14 prokMSA_id:044228 AF428557 soil crust cyanobacterium clone cyano15 prokMSA_id:042773 AF428558 soil crust cyanobacterium clone cyano16 prokMSA_id:019064 AF428559 soil crust cyanobacterium clone cyano17 prokMSA_id:020669 AF428560 soil crust cyanobacterium clone cyano18 prokMSA_id:027080 AF428561 soil crust cyanobacterium clone cyano19 prokMSA_id:042062 AF428562 soil crust cyanobacterium clone cyano20 prokMSA_id:050924 AF428563 soil crust cyanobacterium clone cyano21 prokMSA_id:042216 AF428564 soil crust cyanobacterium clone cyano22 prokMSA_id:046241 AF428565 soil crust cyanobacterium clone cyano23 prokMSA_id:046573 AF428566 soil crust cyanobacterium clone cyano24 prokMSA_id:019697 AF428567 soil crust cyanobacterium clone cyano25 prokMSA_id:029986 AF428568 soil crust cyanobacterium clone cyano26 prokMSA_id:036072 AF428569 soil crust cyanobacterium clone cyano27 prokMSA_id:050994 AF428570 soil crust cyanobacterium clone cyano28 prokMSA_id:040757 AF428571 soil crust cyanobacterium clone cyano29 prokMSA_id:041313 AF428572 soil crust cyanobacterium clone cyano30 prokMSA_id:041777 AF428573 soil crust cyanobacterium clone cyano32 prokMSA_id:020125 AF428574 soil crust cyanobacterium clone cyano33 prokMSA_id:031557 AF428575 soil crust cyanobacterium clone cyano34 prokMSA_id:051359 AF428576 soil crust cyanobacterium clone cyano35 prokMSA_id:037522 AF428577 soil crust cyanobacterium clone cyano36 prokMSA_id:054895 AF428578 soil crust cyanobacterium clone cyano37 prokMSA_id:032043 AF473999 cyanobacterium LR-3 prokMSA_id:068780 AF490373 cyanobacterium clone AKB14 prokMSA_id:081775 AF505891 cyanobacterium JapanCy02 prokMSA_id:081344 AF505892 cyanobacterium JapanCy03 prokMSA_id:081381 AF505901 cyanobacterium JapanCy06 prokMSA_id:081163 AF505902 cyanobacterium JapanCy06 prokMSA_id:081797 AF505905 cyanobacterium JapanCy09 prokMSA_id:082096 AF505906 cyanobacterium JapanCy09 prokMSA_id:081984 AF505908 cyanobacterium JapanCy09 prokMSA_id:082105 AF505909 cyanobacterium JapanCy10 prokMSA_id:082001 AF505910 cyanobacterium JapanCy10 prokMSA_id:081500 AF505911 cyanobacterium JapanCy10 prokMSA_id:082454 AF505912 cyanobacterium JapanCy11 prokMSA_id:082345 AF505917 cyanobacterium JapanCy15 prokMSA_id:082097 AF505918 cyanobacterium JapanCy15 prokMSA_id:081709 AF505944 cyanobacterium NZCy02 prokMSA_id:081742 AF505945 cyanobacterium NZCy02 prokMSA_id:081486 AF505946 cyanobacterium NZCy03 prokMSA_id:081550 AF505947 cyanobacterium NZCy03 prokMSA_id:081884 AF505948 cyanobacterium NZCy03 prokMSA_id:081501 AF505949 cyanobacterium NZCy03 prokMSA_id:081448 AF505950 cyanobacterium NZCy03 prokMSA_id:082118 AF505956 cyanobacterium NZCy07 prokMSA_id:081994 AF505957 cyanobacterium NZCy07 prokMSA_id:081325 AF505958 cyanobacterium NZCy09 prokMSA_id:082158 AF505959 cyanobacterium NZCy09 prokMSA_id:087539 AF510978 Lyngbya semiplena prokMSA_id:059102 AF518769 Trichodesmium pelagicum str. JWI1 prokMSA_id:076830 AF538333 Microcoleus vaginatus prokMSA_id:073529 AJ248294 cyanobacterium clone P2.11 prokMSA_id:037207 AJ248317 cyanobacterium clone P6.10 prokMSA_id:066464 AJ314571 DGGE band 1 prokMSA_id:056504 AJ314573 DGGE band 4 prokMSA_id:066462 AJ314574 DGGE band 5 prokMSA_id:089957 AJ315785 clone 6 prokMSA_id:019917 AY028969 cyanobacterium prokMSA_id:029659 AY037633 soil clone S122 prokMSA_id:036128 AY038435 cyanobacterium clone CD5F5 prokMSA_id:039837 AY038547 cyanobacterium clone CD4A5 prokMSA_id:095140 AY151749 Antarctic cyanobacterium clone BGC-Fr072 prokMSA_id:094309 AY151751 Antarctic cyanobacterium clone BGC-Fr078 prokMSA_id:095120 AY151752 Antarctic cyanobacterium clone BGC-Fr080 prokMSA_id:095406 AY239440 clone rc5-46 complete prokMSA_id:089126 AY311796 Dpcom98 prokMSA_id:090278 AY327202 clone ZB122 prokMSA_id:088479 AY327203 clone ZB126 prokMSA_id:093460 AY360989 clone CL19 prokMSA_id:094221 AY360990 clone JL90 prokMSA_id:093702 AY360991 clone CD44 prokMSA_id:093644 AY360992 clone CD29 prokMSA_id:093420 AY360994 clone CL51 prokMSA_id:028488 L35479 Cyanobacterium sp. Isolate C1 prokMSA_id:054393 L35480 Cyanobacterium sp. Isolate C1 prokMSA_id:003081 NONE Microcoleus sp. str. 10 mfx Australia. prokMSA_id:003083 NONE "Oscillatoria limnetica" str. Solar-Lake. prokMSA_id:003057 NONE "Oscillatoria" sp. PCC 6304. prokMSA_id:003058 NONE Lyngbya confervoides PCC 7419. prokMSA_id:003056 NONE "Oscillatoria" sp. PCC 7515. prokMSA_id:021952 U96443 Oscillatoria limnetica prokMSA_id:018630 X58360 Oscillatoria sp. prokMSA_id:072517 X58361 Oscillatoria sp. prokMSA_id:003075 Y12676 Planktothrix agardhii str. NIVA-CYA 116. prokMSA_id:003076 Y12677 Planktothrix mougeotii str. NIVA-CYA 56/1. prokMSA_id:003077 Y12678 Planktothrix mougeotii str. NIVA-CYA 65. prokMSA_id:003078 Y12679 Planktothrix prolifica str. NIVA-CYA 18. prokMSA_id:003079 Y12680 Planktothrix rubescens str. NIVA-CYA 1. prokMSA_id:003080 Y12681 Planktothrix rubescens str. NIVA-CYA 55. prokMSA_id:021098 Y12682 T.bourrellyi strain NIVA-CYA 33/1 prokMSA_id:071491 Y12683 T.bourrellyi strain NIVA-CYA 33/6 prokMSA_id:022137 Y12684 T.bourrellyi strain NIVA-CYA 58 prokMSA_id:017533 Y12685 T.bourrellyi strain NIVA-CYA 70 prokMSA_id:018631 Y12686 T.bornetii prokMSA_id:003049 Z82790 Phormidium sp. str. NIVA-CYA 177. prokMSA_id:030282 Z82791 T.bourrellyi strain NIVA-CYA 261/1 prokMSA_id:043973 Z82792 Phormidium sp. strain NIVA-CYA 203 prokMSA_id:003061 Z82793 Arthrospira fusiformis str. NIVA-CYA 136/2. prokMSA_id:044964 Z82794 Phormidium sp. strain NIVA-CYA 202 prokMSA_id:003069 Z82795 Planktothrix mougeotii str. NIVA-CYA 11. prokMSA_id:003067 Z82796 Planktothrix agardhii str. NIVA-CYA 29. prokMSA_id:003070 Z82798 Planktothrix prolifica str. NIVA-CYA 320. prokMSA_id:003068 Z82799 Planktothrix agardhii str. NIVA-CYA 299. 2.21.1.2 NOSTOC_GROUP 443 seqs 2.21.1.2.002 OTU 1 seq prokMSA_id:003104 AF050623 clone WsCH31. 2.21.1.2.008 OTU 1 seq prokMSA_id:003096 AF170763 clone QSSC8L-3. 2.21.1.2.009 OTU 3 seqs prokMSA_id:003093 AF132779 "Calothrix desertica" PCC 7102. prokMSA_id:033939 AJ133164 Calothrix sp. strain PCC7714 prokMSA_id:003097 X99213 "Calothrix D253". 2.21.1.2.011 OTU 1 seq prokMSA_id:003094 AB003167 Phormidium ambiguum str. M-71. 2.21.1.2.014 OTU 1 seq prokMSA_id:003089 X68780 "Chlorogloeopsis" sp. str. HTF PCC 7518. 2.21.1.2.015 OTU 7 seqs prokMSA_id:041207 AB039005 Chroococcidiopsis thermalis prokMSA_id:080235 AB074506 Chroococcidiopsis sp. PCC 7431 prokMSA_id:034564 AJ344553 Chroococcidiopsis sp. BB82.3 strain SAG 2024 prokMSA_id:072915 AJ344554 Chroococcidiopsis sp. BB84.1 strain SAG 2025 prokMSA_id:023035 AJ344558 Chroococcidiopsis cubana strain SAG 39.79 prokMSA_id:069690 AJ438183 Synechocystis sp. NCCUBGACC prokMSA_id:003084 NONE Chroococcidiopsis sp. PCC 7203. 2.21.1.2.016 OTU 7 seqs prokMSA_id:080861 AB074505 Fischerella muscicola prokMSA_id:083639 AB093484 Hapalosiphon delicatulus IAM M-266 prokMSA_id:085287 AB093485 Hapalosiphon sp. IAM M-264 prokMSA_id:083042 AB093491 Fischerella sp. IAM M-263 prokMSA_id:016362 AJ428863 Mastigocladus laminosus prokMSA_id:045088 AY034793 Hapalosiphon welwitschii prokMSA_id:070960 AY039703 Fischerella sp. CENA19 2.21.1.2.017 OTU 1 seq prokMSA_id:020777 AJ344560 Fischerella sp. BB98.1 strain SAG 2027 2.21.1.2.018 OTU 9 seqs prokMSA_id:059110 AF420445 Oscillatoria spongeliae 518bg prokMSA_id:059108 AF420446 Oscillatoria spongeliae 512bg prokMSA_id:056398 AF534685 Oscillatoria spongeliae isolate 516bg prokMSA_id:059105 AF534686 Oscillatoria spongeliae isolate 511bg prokMSA_id:059106 AF534687 Oscillatoria spongeliae isolate 517bg prokMSA_id:059104 AF534688 Oscillatoria spongeliae isolate 504bg prokMSA_id:059101 AF534690 Oscillatoria spongeliae isolate 523bg prokMSA_id:059100 AF534692 Oscillatoria spongeliae isolate 519bg prokMSA_id:059099 AF534693 Oscillatoria spongeliae isolate 513bg 2.21.1.2.019 OTU 1 seq prokMSA_id:025956 AF284809 Microcoleus sociatus MPI 96MS.KID 2.21.1.2.020 OTU 2 seqs prokMSA_id:036570 AF263335 Phormidium sp. Ant-Lunch prokMSA_id:027539 AF263336 Phormidium sp. Ant-Orange 2.21.1.2.021 OTU 1 seq prokMSA_id:032930 AF218374 Phormidium murrayii 2.21.1.2.022 OTU 2 seqs prokMSA_id:069425 AY147029 Calothrix sp. CCMEE 5093 prokMSA_id:056564 AY147030 Calothrix sp. CCMEE 5085 2.21.1.2.024 OTU 1 seq prokMSA_id:035188 AF218377 Lyngbya sp. UTCC296 2.21.1.2.026 OTU 3 seqs prokMSA_id:042801 AY038726 cyanobacterium clone TAF-A32 prokMSA_id:034545 AY038727 cyanobacterium clone TAF-B69 prokMSA_id:071940 AY038728 cyanobacterium clone TAF-B14 2.21.1.2.027 OTU 2 seqs prokMSA_id:084987 AB093483 Scytonema sp. IAM M-262 prokMSA_id:044224 AY069954 Scytonema sp. U-3-3 2.21.1.2.028 OTU 1 seq prokMSA_id:045387 AB047103 Anabaena macrospora 2.21.1.2.029 OTU 3 seqs prokMSA_id:082530 AB093487 Fischerella major NIES 592 prokMSA_id:060602 AF407696 clone G01 prokMSA_id:060570 AF407731 clone B95 2.21.1.2.031 OTU 255 seqs prokMSA_id:003095 AB016520 "Anabaena variabilis" IAM M-3. prokMSA_id:046466 AB039002 Nodularia spumigena prokMSA_id:017379 AB042858 Anabaena flos-aquae prokMSA_id:019807 AB042859 Anabaena circinalis NIES-41 prokMSA_id:040428 AB042985 Cylindrospermopsis raciborskii prokMSA_id:036015 AB043537 Anabaenopsis circularis prokMSA_id:046184 AB047104 Anabaena spiroides prokMSA_id:079820 AB074502 Anabaena variabilis prokMSA_id:080843 AB074503 Nostoc linckia prokMSA_id:080820 AB074504 Calothrix brevissima prokMSA_id:090192 AB085687 Nostoc sp. HK-01 prokMSA_id:077866 AB088375 Nostoc commune strain:KU002 prokMSA_id:063340 AB088405 Nostoc commune strain:M-13 prokMSA_id:083776 AB093486 Tolypothrix sp. IAM M-259 prokMSA_id:082666 AB093488 Anabaena planctonica NIES 810 prokMSA_id:082934 AB093490 Nostoc entophytum IAM M-267 prokMSA_id:083183 AB094352 Nostoc commune country:Japan:Ishikawa Kanazawa Asano River prokMSA_id:003107 AF027653 Nostoc TDI#AR94 str. TDI#AR94. prokMSA_id:003108 AF027654 Nostoc PCC9709 PCC 9709. prokMSA_id:003103 AF027655 Nostoc punctiforme PCC 73102. prokMSA_id:003105 AF062637 Nostoc GSV224 str. GSV224. prokMSA_id:003106 AF062638 Nostoc ATCC53789 ATCC 53789. prokMSA_id:003101 AF067818 Cylindrospermopsis raciborskii str. Solomon Dam Palm Island prokMSA_id:003102 AF067819 Cylindrospermopsis raciborskii str. Solomon Dam Palm Island prokMSA_id:003098 AF091150 "Anabaena cylindrica" str. NIES19 PCC 7122. prokMSA_id:003099 AF092504 Cylindrospermopsis raciborskii str. AWT205. prokMSA_id:036477 AF160256 Anabaena bergii prokMSA_id:033470 AF230965 Nodularia harveyana prokMSA_id:049853 AF247571 Anabaena circinalis AWQC118C prokMSA_id:048627 AF247572 Anabaena circinalis AWQC134C prokMSA_id:023978 AF247573 Anabaena circinalis AWQC150A prokMSA_id:052583 AF247574 Anabaena circinalis AWQC173A prokMSA_id:030153 AF247575 Anabaena circinalis AWQC271C prokMSA_id:042825 AF247576 Anabaena circinalis AWQC279B prokMSA_id:021511 AF247577 Anabaena circinalis AWQC306A prokMSA_id:019102 AF247578 Anabaena circinalis AWQC307C prokMSA_id:023731 AF247579 Anabaena circinalis AWQC310F prokMSA_id:050849 AF247580 Anabaena circinalis AWQC323B prokMSA_id:020514 AF247581 Anabaena circinalis AWQC331C prokMSA_id:035407 AF247582 Anabaena circinalis AWQC332H prokMSA_id:045448 AF247583 Anabaena circinalis AWQC344B prokMSA_id:024929 AF247584 Anabaena circinalis AWT001 prokMSA_id:021891 AF247585 Anabaena circinalis AWT204A prokMSA_id:019178 AF247586 Anabaena circinalis AWT205B prokMSA_id:039090 AF247587 Anabaena circinalis AWT02 prokMSA_id:041035 AF247588 Anabaena circinalis NIES41 prokMSA_id:019855 AF247589 Anabaena circinalis AWQC131C prokMSA_id:038208 AF247590 Anabaena flos-aquae AWQC112D prokMSA_id:036205 AF247591 Anabaena affinis NIES40 prokMSA_id:042168 AF247592 Anabaena cylindrica NIES19 prokMSA_id:029130 AF247593 Anabaena variabilis NIES23 prokMSA_id:042144 AF247594 Anabaena solitaria NIES80 prokMSA_id:028828 AF247595 Anabaenopsis circularis NIES21 prokMSA_id:030002 AF247596 Anabaena flos-aquae NRC44-1 prokMSA_id:048640 AF247597 Anabaena flos-aquae NRC525-17 prokMSA_id:070323 AF268004 Nodularia spumigena strain BY1 prokMSA_id:052046 AF268005 Nodularia spumigena strain HEM prokMSA_id:037800 AF268006 Nodularia spumigena strain L575 prokMSA_id:044512 AF268007 Nodularia spumigena strain NSPH02 prokMSA_id:073230 AF268008 Nodularia spumigena strain NSLA02A4 prokMSA_id:035491 AF268009 Nodularia spumigena strain NSLA01 prokMSA_id:040979 AF268010 Nodularia spumigena strain NSOR04 prokMSA_id:024971 AF268011 Nodularia spumigena strain NSOR12 prokMSA_id:034506 AF268012 Nodularia spumigena strain NSBL05 prokMSA_id:028170 AF268013 Nodularia spumigena strain NSKR07 prokMSA_id:034133 AF268014 Nodularia spumigena strain NSOR10 prokMSA_id:032123 AF268015 Nodularia spumigena strain NSGL02A10 prokMSA_id:019948 AF268016 Nodularia spumigena strain NSBR01 prokMSA_id:074014 AF268017 Nodularia spumigena strain NSPH05A14 prokMSA_id:050096 AF268018 Nodularia sphaerocarpa prokMSA_id:020056 AF268019 Nodularia harveyana strain PCC7804 prokMSA_id:028247 AF268020 Nodularia harveyana strain CDAC1983/300 prokMSA_id:024739 AF268021 Nodularia harveyana strain UTEX-B2093 prokMSA_id:046957 AF268022 Nodularia spumigena strain UTEX-B2092 prokMSA_id:051799 AF268023 Nodularia spumigena strain PCC73104 prokMSA_id:049064 AF268024 Nodularia spumigena strain HKVV prokMSA_id:024719 AF317628 Anabaena flos-aquae strain AWQC 264A prokMSA_id:044470 AF317629 Anabaena sp. PCC 7108 prokMSA_id:036941 AF317630 Nostoc sp. AWT 203 prokMSA_id:050880 AF317631 Nostoc sp. PCC 7120 prokMSA_id:028360 AF317632 Aphanizomenon flos-aquae strain NIES81 prokMSA_id:031378 AF334690 Spirirestis rafaelensis clone 143-2A + 159-1 prokMSA_id:049357 AF334691 Spirirestis rafaelensis clone 143-2B + 159-1 prokMSA_id:034924 AF334692 Spirirestis rafaelensis clone 143-2C + 159-1 prokMSA_id:074150 AF334693 Tolypothrix distorta clone 163-5A + 163-8 prokMSA_id:070327 AF334694 Tolypothrix distorta clone 163-5B + 163-8 prokMSA_id:044697 AF334701 Coleodesmium wrangelii clone 144-2A + 159-2 prokMSA_id:050244 AF334702 Coleodesmium wrangelii clone 144-2B + 159-2 prokMSA_id:056651 AF425995 Aphanizomenon sp. NH-5 prokMSA_id:058859 AF506238 Nostoc sp. 'Muscicolous cyanobiont 10' prokMSA_id:058861 AF506239 Nostoc sp. 'Peltigera pruinosa cyanobiont 14' prokMSA_id:056511 AF506240 Nostoc sp. 'Peltigera venosa cyanobiont 15' prokMSA_id:058856 AF506241 Nostoc sp. 'Nephroma arcticum cyanobiont 16' prokMSA_id:070767 AF506242 Nostoc sp. 17 prokMSA_id:058858 AF506243 Nostoc sp. 'Peltigera pruinosa cyanobiont 18' prokMSA_id:058857 AF506244 Nostoc sp. 'Lobaria hallii cyanobiont 19' prokMSA_id:058855 AF506245 Nostoc sp. 'Peltigera collina cyanobiont 20' prokMSA_id:058853 AF506246 Nostoc sp. 'Muscicolous cyanobiont 21' prokMSA_id:058854 AF506247 Nostoc sp. 'Peltigera praetextata cyanobiont 22' prokMSA_id:058849 AF506248 Nostoc sp. 'Nephroma expallidum cyanobiont 23' prokMSA_id:058850 AF506249 Nostoc sp. 'Peltigera malacea cyanobiont 24' prokMSA_id:056083 AF506250 Nostoc sp. 'lichen cyanobiont 25' prokMSA_id:058852 AF506251 Nostoc sp. 'Nephroma parile cyanobiont 26' prokMSA_id:055937 AF506252 Nostoc sp. 'Nephroma parile cyanobiont 27' prokMSA_id:058847 AF506253 Nostoc sp. 'Nephroma parile cyanobiont 28' prokMSA_id:071529 AF506255 Nostoc sp. 'Parmeliella triptophylla cyanobiont 30' prokMSA_id:073487 AF506257 Nostoc sp. 'Nephroma parile cyanobiont 32' prokMSA_id:058845 AF506258 Nostoc sp. 'Nephroma helveticum cyanobiont 33' prokMSA_id:073348 AF506259 Nostoc sp. 'Lobaria cyanobiont 34' prokMSA_id:071971 AF506261 Nostoc sp. 'Lobaria pulmonaria cyanobiont 36' prokMSA_id:074222 AF506262 Nostoc sp. 'Nephroma helveticum cyanobiont 37' prokMSA_id:058839 AF506263 Nostoc sp. 'Nephroma resupinatum cyanobiont 38' prokMSA_id:058840 AF506264 Nostoc sp. 'Nephroma laevigatum cyanobiont 39' prokMSA_id:058838 AF506265 Nostoc sp. 'Nephroma resupinatum cyanobiont 40' prokMSA_id:060843 AF516724 Cylindrospermopsis raciborskii strain Goon prokMSA_id:072636 AF516725 Cylindrospermopsis raciborskii strain LJ prokMSA_id:071065 AF516726 Cylindrospermopsis raciborskii strain Mk prokMSA_id:056040 AF516727 Cylindrospermopsis raciborskii strain Aqc prokMSA_id:060840 AF516728 Cylindrospermopsis raciborskii strain 09A prokMSA_id:060838 AF516729 Cylindrospermopsis raciborskii strain 24C prokMSA_id:060835 AF516730 Cylindrospermopsis raciborskii strain 23D prokMSA_id:060834 AF516731 Cylindrospermopsis raciborskii strain 23B prokMSA_id:060833 AF516732 Cylindrospermopsis raciborskii strain 05E prokMSA_id:060832 AF516733 Cylindrospermopsis raciborskii strain Brazil 1 prokMSA_id:060830 AF516734 Cylindrospermopsis raciborskii strain Brazil 2 prokMSA_id:060831 AF516735 Cylindrospermopsis raciborskii strain Germany 1 prokMSA_id:060828 AF516736 Cylindrospermopsis raciborskii strain Germany 2 prokMSA_id:060829 AF516737 Cylindrospermopsis raciborskii strain Bal 5 prokMSA_id:055728 AF516738 Cylindrospermopsis raciborskii strain Bal 6 prokMSA_id:060827 AF516739 Cylindrospermopsis raciborskii strain Marau 1 prokMSA_id:060825 AF516740 Cylindrospermopsis raciborskii strain Marau 2 prokMSA_id:060826 AF516741 Cylindrospermopsis raciborskii strain 4799 prokMSA_id:060823 AF516742 Cylindrospermopsis raciborskii strain Caia prokMSA_id:060824 AF516743 Cylindrospermopsis raciborskii strain Florida D prokMSA_id:060821 AF516744 Cylindrospermopsis raciborskii strain Florida G prokMSA_id:060822 AF516745 Cylindrospermopsis raciborskii strain Florida F prokMSA_id:060818 AF516746 Cylindrospermopsis raciborskii strain Florida I prokMSA_id:060819 AF516747 Anabaenopsis sp. 1A prokMSA_id:003100 AJ006281 str. watersample from Lake Loosdrecht. prokMSA_id:031078 AJ133151 Anabaena sp. strain 86 prokMSA_id:020684 AJ133152 Anabaena sp. strain 14 prokMSA_id:074202 AJ133153 Aphanizomenon sp. strain 202 prokMSA_id:050100 AJ133154 Aphanizomenon sp. strain PCC7905 prokMSA_id:071610 AJ133155 Aphanizomenon sp. strain TR183 prokMSA_id:069813 AJ133156 Anabaena sp strain 90 prokMSA_id:073276 AJ133157 Anabaena sp. strain 66A prokMSA_id:074386 AJ133158 Anabaena sp. strain CYA83/1 prokMSA_id:072914 AJ133159 Anabaena sp. strain A202A1 prokMSA_id:045965 AJ133160 Anabaena sp. strain A277 prokMSA_id:024012 AJ133161 Nostoc sp. strain 152 prokMSA_id:024087 AJ133162 Anabaena sp. strain PCC7108 prokMSA_id:074605 AJ133163 Cylindrospermum sp. strain PCC7417 prokMSA_id:071066 AJ133177 Nodularia sp. strain BY1 prokMSA_id:071521 AJ133178 Nodularia sp. strain GR8b prokMSA_id:072177 AJ133179 Nodularia sp. strain NSPI-05 prokMSA_id:071803 AJ133180 Nodularia sp. strain NSOR-12 prokMSA_id:019362 AJ133181 Nodularia sp. strain PCC7804 prokMSA_id:072893 AJ133182 Nodularia sp. strain UP16f prokMSA_id:052714 AJ133183 Nodularia sp. strain HKVV prokMSA_id:035605 AJ133184 Nodularia sp. strain PCC73104/1 prokMSA_id:003091 AJ224447 Nodularia BCNOD9427 str. BCNOD9427. prokMSA_id:034443 AJ245457 Aphanizomenon sp. 'BC-Aph 9601' prokMSA_id:032120 AJ293102 Anabaena flos-aquae strain 37 prokMSA_id:024903 AJ293103 Anabaena circinalis strain 123 prokMSA_id:071028 AJ293104 Anabaena Lemmermannii strain 202A2 prokMSA_id:020833 AJ293105 Anabaena solitaria strain 82 prokMSA_id:037515 AJ293106 Anabaena sp. 299 strain 299 prokMSA_id:025149 AJ293107 Anabaena mendotae strain 57 prokMSA_id:043551 AJ293108 Anabaena planctonica strain 71 prokMSA_id:040783 AJ293109 Anabaena compacta strain 118 prokMSA_id:073220 AJ293110 Anabaena cf. cylindrica 133 strain 133 prokMSA_id:021286 AJ293111 Anabaena compacta strain 189 prokMSA_id:040671 AJ293112 Anabaena crassa strain 215 prokMSA_id:054292 AJ293113 Anabaena Lemmermannii strain 256 prokMSA_id:028207 AJ293114 Anabaena cf. Lemmermannii 262 strain 262 prokMSA_id:040662 AJ293115 Anabaena macrospora strain PMC9301 prokMSA_id:021330 AJ293116 Anabaena spiroides strain PMC9403 prokMSA_id:043633 AJ293117 Anabaena cf. Scheremetievi PMC9701 strain PMC9701 prokMSA_id:043523 AJ293118 Anabaena spiroides strain PMC9702 prokMSA_id:074246 AJ293119 Anabaena cf. cylindrica PMC9705 strain PMC9705 prokMSA_id:047987 AJ293120 Anabaena sp. IC-1 strain IC-1 prokMSA_id:071116 AJ293121 Aphanizomenon sp. 326 strain 326 prokMSA_id:040148 AJ293122 Aphanizomenon flos-aquae var. Klebahnii strain 83 prokMSA_id:020681 AJ293123 Aphanizomenon flos-aquae var. Klebahnii strain 218 prokMSA_id:020887 AJ293124 Aphanizomenon gracile strain 219 prokMSA_id:072921 AJ293125 Aphanizomenon cf. gracile 271 strain 271 prokMSA_id:073017 AJ293126 Aphanizomenon flos-aquae strain PMC9401 prokMSA_id:031160 AJ293127 Aphanizomenon gracile strain PMC9402 prokMSA_id:053702 AJ293128 Aphanizomenon cf. flos-aquae PMC9501 strain PMC9501 prokMSA_id:037415 AJ293129 Aphanizomenon flos-aquae strain PMC9706 prokMSA_id:074363 AJ293130 Aphanizomenon flos-aquae strain PMC9707 prokMSA_id:023120 AJ293131 Aphanizomenon flos-aquae strain NIES81 prokMSA_id:035715 AJ344563 Nostoc sp. DM103 strain SAG 2028 prokMSA_id:065246 AJ488603 Anabaena azotica prokMSA_id:044376 AP003587 Nostoc sp. PCC 7120 complete genome section 7/19 prokMSA_id:053088 AP003588 Nostoc sp. PCC 7120 complete genome section 8/19 prokMSA_id:046727 AP003595 Nostoc sp. PCC 7120 complete genome section 15/19 prokMSA_id:052227 AP003598 Nostoc sp. PCC 7120 complete genome section 18/19 prokMSA_id:041609 AY038032 Anabaena flos-aquae strain PCC 9302 prokMSA_id:045521 AY038033 Anabaenopsis sp. PCC 9215 prokMSA_id:020340 AY038034 Nodularia sp. PCC 9350 prokMSA_id:031144 AY038035 Aphanizomenon flos-aquae prokMSA_id:029506 AY038036 Cyanospira rippkae prokMSA_id:064434 AY102886 clone BCM1-4B prokMSA_id:086833 AY112695 Nostoc sp. VI.5 prokMSA_id:094443 AY151734 Antarctic cyanobacterium clone Fr304 complete prokMSA_id:056653 AY157741 Nostoc sp. 'Mitsui 38901' prokMSA_id:088320 AY196082 Aphanizomenon flos-aquae str. 'Aph Zayi' prokMSA_id:090379 AY196083 Aphanizomenon flos-aquae str. 'Aph Inba' prokMSA_id:089975 AY196084 Aphanizomenon flos-aquae str. 'Aph K2' prokMSA_id:089617 AY196085 Aphanizomenon flos-aquae str. 'Aph Ku' prokMSA_id:088724 AY196086 Aphanizomenon gracile str. 'Aph NH-5' prokMSA_id:088937 AY196087 Aphanizomenon issatschenkoi str. TAC419 prokMSA_id:088923 AY196088 Aphanizomenon issatschenkoi str. LEMCYA31 prokMSA_id:081554 AY218827 Nostoc muscorum CENA18 prokMSA_id:082104 AY218828 Nostoc muscorum CENA61 prokMSA_id:081799 AY218829 Anabaena flos-aquae UTCC 64 prokMSA_id:081241 AY218831 Cylindrospermum sp. CENA33 prokMSA_id:081294 AY218833 Nostoc commune UTEX 584 prokMSA_id:088399 AY328573 HOClCi24 prokMSA_id:089036 AY328578 HOClCi29 prokMSA_id:089299 AY328614 HOClCi65 prokMSA_id:096319 AY333615 Nostoc sp. 'Nephroma parile cyanobiont' 23_Nash_III_30009A prokMSA_id:098166 AY333616 Nostoc sp. 'Nephroma resupinatum cyanobiont' 25_Nash_III_30009 prokMSA_id:097594 AY333617 Nostoc sp. 'Nephroma bellum cyanobiont' 26_Nash_III 30009 prokMSA_id:097853 AY333618 Nostoc sp. 'Nephroma parile cyanobiont' 27_Rikkinen_et_al._003005 prokMSA_id:096744 AY333619 Nostoc sp. 'Nephroma parile cyanobiont' 28_Vitikainen_13242 prokMSA_id:098604 AY333620 Nostoc sp. 'Nephroma parile cyanobiont' 29_Hansen_22_June_1998 prokMSA_id:097877 AY333621 Nostoc sp. 'Nephroma bellum cyanobiont' 34_Vitikainen_13239 prokMSA_id:095895 AY333622 Nostoc sp. 'Nephroma bellum cyanobiont' 35_Ahti_&_Djan-Chekar_60277 prokMSA_id:097306 AY333623 Nostoc sp. 'Dendriscocaulon sp. cyanobiont' 36_Rikkinen_000313 prokMSA_id:095412 AY333624 Nostoc sp. 'Nephroma helveticum cyanobiont' 37_Rikkinen_A33A prokMSA_id:097732 AY333625 Nostoc sp. 'Nephroma tangeriense cyanobiont' 39_Burgaz_22_July_1995 prokMSA_id:095558 AY333626 Nostoc sp. 'Nephroma resupinatum cyanobiont' 40_Rikkinen_98A34B prokMSA_id:096059 AY333627 Nostoc sp. 'Nephroma laevigatum cyanobiont' 41_Skyten_6243 prokMSA_id:095630 AY333628 Nostoc sp. 'Nephroma cellulosum cyanobiont' 42_Stenroos_3680 prokMSA_id:096840 AY333629 Nostoc sp. 'Nephroma helveticum cyanobiont' 44_Nash_III_37165 prokMSA_id:096369 AY333630 Nostoc sp. 'Nephroma laevigatum cyanobiont' 51_Mayrhofer_&_Prugger_11583 prokMSA_id:095617 AY333631 Nostoc sp. 'Nephroma laevigatum cyanobiont' 52_Feuerer_&_Marth_19_July_1997 prokMSA_id:097571 AY333632 Nostoc sp. 'Sticta fuliginosa cyanobiont' 53_Rikkinen_980W1A prokMSA_id:096139 AY333633 Nostoc sp. 'Nephroma laevigatum cyanobiont' 54_Kaantonen_284/94 prokMSA_id:097496 AY333634 Nostoc sp. 'Nephroma arcticum cyanobiont' 57_Rikkinen_et_al._003002 prokMSA_id:097945 AY333635 Nostoc sp. 'Leptogium corniculatum cyanobiont' 60_Rikkinen_V2b prokMSA_id:098622 AY333636 Nostoc sp. 'Pannaria sp. cyanobiont' 61_Rikkinen_E10 prokMSA_id:098323 AY333637 Nostoc sp. 'Nephroma expallidum cyanobiont' 64_Ulvinen_22_July_1998 prokMSA_id:097779 AY333638 Nostoc sp. 'Nephroma arcticum cyanobiont' 68_Hansen_700B prokMSA_id:095375 AY333639 Nostoc sp. 'Peltigera praetextata cyanobiont' 69_Rikkinen_V2A prokMSA_id:097009 AY333640 Nostoc sp. 'Nephroma arcticum cyanobiont' 70_Hansen_6_Aug._1998 prokMSA_id:095285 AY333641 Nostoc sp. 'Nephroma arcticum cyanobiont' 74_Rikkinen_et_al._003016 prokMSA_id:095438 AY333642 Nostoc sp. 'Nephroma expallidum cyanobiont' 75_Hansen_31_July_1998 prokMSA_id:098321 AY422691 Anabaena azotica strain FACHB-118 prokMSA_id:096618 AY422694 Nostoc sp. 'Bad Sachsa_BSC-16-N' prokMSA_id:053707 NC_003272 Nostoc sp. PCC 7120 complete genome prokMSA_id:003090 NONE Cylindrospermum sp. PCC 7417. prokMSA_id:003092 X59559 Nostoc muscorum PCC 7120. 2.21.1.2.032 OTU 9 seqs prokMSA_id:067896 AF355383 Microcoleus steenstrupii clone 152-2A prokMSA_id:067891 AF355386 Microcoleus steenstrupii clone 173-1C prokMSA_id:067890 AF355387 Microcoleus steenstrupii clone 177-5B prokMSA_id:067893 AF355388 Microcoleus steenstrupii clone 173-1A prokMSA_id:067892 AF355389 Microcoleus steenstrupii clone 177-5A prokMSA_id:067889 AF355390 Microcoleus steenstrupii clone 177-2A prokMSA_id:067888 AF355391 Microcoleus steenstrupii clone 177-2B prokMSA_id:067886 AF355392 Microcoleus steenstrupii clone 177-4B prokMSA_id:067887 AF355393 Microcoleus steenstrupii clone 177-4C 2.21.1.2.033 OTU 1 seq prokMSA_id:070663 AB045961 Oscillatoria princeps strain: NIVA CYA 150 2.21.1.2.034 OTU 2 seqs prokMSA_id:071932 AF334699 Scytonema hyalinum clone 144-3B + 159-3 prokMSA_id:073317 AF334700 Scytonema hyalinum clone 144-3C + 159-3 2.21.1.2.035 OTU 1 seq prokMSA_id:075560 AY153459 cyanobacterium isolate clone3-2 2.21.1.2.036 OTU 1 seq prokMSA_id:079366 AY181212 Nostocaceae cyanobiont AE1 2.21.1.2.037 OTU 1 seq prokMSA_id:080814 AY188306 clone KD3-62 2.21.1.2.038 OTU 1 seq prokMSA_id:081510 AY218601 clone KD3-113 2.21.1.2.039 OTU 1 seq prokMSA_id:083035 AB093489 Chlorogloeopsis fritschii PCC 6912 2.21.1.2.040 OTU 1 seq prokMSA_id:094919 AY151726 Antarctic cyanobacterium clone Fr048 complete 2.21.1.2.999 poor quality 123 seqs prokMSA_id:027220 AB023605 NIC012 prokMSA_id:077669 AB087403 Nostoc sp. KU001 prokMSA_id:089881 AB097922 Calothrix sp. KU004 prokMSA_id:023172 AF044269 Aphanizomenon ovalisporum strain ILC-146 prokMSA_id:029537 AF044270 Aphanizomenon ovalisporum prokMSA_id:034406 AF078295 Grassland soil clone saf3_106 prokMSA_id:040200 AF107506 SY2-21 prokMSA_id:036475 AF266664 cyanobacterium prokMSA_id:021797 AF279110 Chroococcidiopsis sp. 171A789-2 prokMSA_id:050741 AF284794 Nostoc commune prokMSA_id:070243 AF284807 Nostoc sp. MPI 98NO.JHS prokMSA_id:073853 AF334695 Calothrix parietina clone 144-1A + 159-4 prokMSA_id:070573 AF334696 Calothrix parietina clone 144-1B + 159-4 prokMSA_id:071876 AF334697 Calothrix parietina clone 144-1C + 159-4 prokMSA_id:073152 AF334698 Scytonema hyalinum clone 144-3A + 159-3 prokMSA_id:048087 AF334703 Coleodesmium wrangelii clone 144-2C + 159-2 prokMSA_id:068219 AF365504 clone BM89MF5BC9 prokMSA_id:068210 AF365515 clone BM89MF5BE11 prokMSA_id:068188 AF365540 clone BT49MF4B prokMSA_id:068152 AF365583 clone BT60MF2BA4 prokMSA_id:068145 AF365590 clone BT60MF2BB4 prokMSA_id:055761 AF365648 clone BM89DS6BB11 prokMSA_id:067971 AF365797 clone BM89PA1BbH11 prokMSA_id:067944 AF365830 clone BT60PA10BC8 prokMSA_id:036621 AF373029 cyanobacterium clone IL-10.1 prokMSA_id:033200 AF392787 clone SCC6 prokMSA_id:041457 AF399862 cyanobacterium prokMSA_id:017097 AF428478 soil crust cyanobacterium clone moss2 prokMSA_id:041271 AF428508 soil crust cyanobacterium clone lichen2 prokMSA_id:026974 AF428511 soil crust cyanobacterium clone lichen5 prokMSA_id:054035 AF428515 soil crust cyanobacterium clone lichen9 prokMSA_id:071106 AF428519 soil crust cyanobacterium clone lichen13 prokMSA_id:073724 AF428520 soil crust cyanobacterium clone lichen14 prokMSA_id:041288 AF428521 soil crust cyanobacterium clone lichen15 prokMSA_id:018374 AF428526 soil crust cyanobacterium clone lichen20 prokMSA_id:049048 AF428527 soil crust cyanobacterium clone lichen21 prokMSA_id:047469 AF428529 soil crust cyanobacterium clone lichen23 prokMSA_id:042487 AF428530 soil crust cyanobacterium clone lichen24 prokMSA_id:072699 AF428533 soil crust cyanobacterium clone lichen27 prokMSA_id:031154 AF428536 soil crust cyanobacterium clone lichen30 prokMSA_id:020377 AF428537 soil crust cyanobacterium clone lichen31 prokMSA_id:044658 AF428538 soil crust cyanobacterium clone lichen32 prokMSA_id:019066 AF428540 soil crust cyanobacterium clone lichen35 prokMSA_id:041304 AF428541 soil crust cyanobacterium clone lichen36 prokMSA_id:020104 AF428542 soil crust cyanobacterium clone lichen37 prokMSA_id:047132 AF428551 soil crust cyanobacterium clone cyano9 prokMSA_id:050079 AF446264 cyanobacterium FL06F05 prokMSA_id:021122 AF446269 eukaryote FL14A11 ; chloroplast chloroplast product prokMSA_id:071659 AF493845 clone 6 prokMSA_id:069723 AF493854 clone 15 prokMSA_id:082302 AF505882 cyanobacterium ItalyCy01 prokMSA_id:081114 AF505883 cyanobacterium ItalyCy02 prokMSA_id:082117 AF505884 cyanobacterium ItalyCy02 prokMSA_id:074223 AF506254 Nostoc sp. 'Parmeliella triptophylla cyanobiont 29' prokMSA_id:058842 AF506256 Nostoc sp. 'Nephroma bellum cyanobiont 31' prokMSA_id:058837 AF506260 Nostoc sp. 'Nephroma cyanobiont 35' prokMSA_id:059103 AF534689 Oscillatoria spongeliae isolate 522bg prokMSA_id:038056 AJ011149 3-25 clone 3-25 prokMSA_id:061709 AJ416233 clone Sta4-06 prokMSA_id:029904 AJ437559 Nostoc sp. pcA prokMSA_id:054434 AJ437560 Nostoc sp. pcB prokMSA_id:039694 AJ437561 Nostoc sp. PC2 prokMSA_id:037811 AJ437562 Nostoc sp. PMa1 prokMSA_id:034772 AJ437563 Nostoc sp. pmaA prokMSA_id:022105 AJ437564 Nostoc sp. PMi1 prokMSA_id:031306 AJ437565 Nostoc sp. pmiA prokMSA_id:025820 AJ437566 Nostoc sp. pnB prokMSA_id:049330 AJ437567 Nostoc sp. PN1 prokMSA_id:068676 AJ438181 Mastigocladus laminosus prokMSA_id:019928 AY037881 cyanobacterium clone CD1B1 ; chloroplast chloroplast product prokMSA_id:031812 AY038037 Anabaena flos-aquae strain PCC 9302 prokMSA_id:030235 AY043364 Nostoc sp. Nos11 prokMSA_id:016892 AY043366 Nostoc sp. Nos26 prokMSA_id:031263 AY074799 Anabaena flos-aquae strain NIER-10002 prokMSA_id:066066 AY099254 clone MTU-30 prokMSA_id:060913 AY100326 cyanobacterium isolate DGGE band c prokMSA_id:072391 AY143732 cyanobacterium clone V18 prokMSA_id:074934 AY150935 cyanobacterium clone uv30a prokMSA_id:075468 AY150938 cyanobacterium clone uv37a prokMSA_id:076159 AY150943 cyanobacterium clone uv82 prokMSA_id:075037 AY150949 alpha clone uv81 prokMSA_id:094401 AY151766 Antarctic cyanobacterium isolate DGGE gel band FrF1 prokMSA_id:094744 AY151767 Antarctic cyanobacterium isolate DGGE gel band FrF1b prokMSA_id:077068 AY153452 cyanobacterium isolate DGGE gel band B3-14 prokMSA_id:075913 AY153453 cyanobacterium isolate DGGE gel band B4 prokMSA_id:075471 AY153464 cyanobacterium isolate clone5-41 prokMSA_id:069990 AY157742 Nostoc sp. 'Mitsui 56111' prokMSA_id:069201 AY157743 Anabaena sphaerica prokMSA_id:079498 AY186825 cyanobacterium clone uv30a prokMSA_id:079596 AY186833 cyanobacterium clone uv82 prokMSA_id:079228 AY186839 alpha clone uv81 prokMSA_id:080106 AY193022 clone WSB11 prokMSA_id:081547 AY218830 Phormidium autumnale UTEX 1580 prokMSA_id:087888 AY293477 cyanobacterium clone FL06F11 prokMSA_id:094284 AY360980 clone JD74 prokMSA_id:093576 AY360993 clone CD60 prokMSA_id:093585 AY360995 clone JD40 prokMSA_id:094049 AY360998 clone CD30 prokMSA_id:093637 AY360999 clone CD47 prokMSA_id:094213 AY361000 clone CD74 prokMSA_id:003111 NONE "Anabaena cylindrica" str. NIES19 PCC 7122. prokMSA_id:003110 NONE Nodularia sp. PCC 73104. prokMSA_id:003109 NONE Nostoc punctiforme PCC 73102. prokMSA_id:003088 NONE "Chlorogloeopsis fritschii" PCC 6718. prokMSA_id:003085 NONE "Calothrix desertica" PCC 7102. prokMSA_id:003086 NONE Scytonema sp. PCC 7110. prokMSA_id:003087 NONE Fischerella sp. PCC 7414. prokMSA_id:030022 U48871 Anabaena sp. strain 54 prokMSA_id:017351 U48873 Anabaena sp. strain 86 prokMSA_id:033067 U48874 Anabaena sp. strain 90 prokMSA_id:050844 Y12687 N.commune prokMSA_id:037178 Y12688 N.flagelliforme prokMSA_id:042757 Z82776 Nostoc sp. strain NIVA-CYA 124 prokMSA_id:026014 Z82789 C.thermalis strain PCC 7203 prokMSA_id:027525 Z82797 A.lemmermannii strain NIVA-CYA 281/1 prokMSA_id:070848 Z82800 A.lemmermannii strain NIVA-CYA 266/1 prokMSA_id:072107 Z82801 A.lemmermannii strain NIVA-CYA 83/1 prokMSA_id:034286 Z82802 Anabaena sp. strain NIVA-CYA 267/4 prokMSA_id:050352 Z82803 Nostoc sp. strain NIVA-CYA 246/PCC 7120 prokMSA_id:033405 Z82804 Nostoc sp. strain NIVA-CYA 308 prokMSA_id:072359 Z82805 Nostoc sp. strain NIVA-CYA 194 prokMSA_id:036969 Z82806 A.gracile strain NIVA-CYA 103 prokMSA_id:049019 Z82809 A.flos-aquae strain NIVA-CYA 142 2.21.1.3 GLOEOTHECE-GLOEOCAPSA_GROUP 572 seqs 2.21.1.3.001 OTU 1 seq prokMSA_id:003253 X63141 Prochloron didemni. 2.21.1.3.002 OTU 10 seqs prokMSA_id:022842 AF296872 Cyanothece sp. PCC 7418 prokMSA_id:064142 AF477877 clone 41-UMH 22% pond prokMSA_id:003244 AJ000708 Cyanothece sp. PCC 7418. prokMSA_id:003245 AJ000709 str. MPI 95AH10. prokMSA_id:003246 AJ000710 str. MPI 95AH13. prokMSA_id:003252 AJ000711 Dactylococcopsis sp. PCC 8305. prokMSA_id:003248 AJ000712 str. MPI 96N303. prokMSA_id:003249 AJ000713 str. MPI 96N304. prokMSA_id:056111 AY121353 Aphanothece nidulans strain KCTC AG10041 prokMSA_id:055647 AY121354 Aphanothece naegelii strain KCTC AG10042 2.21.1.3.003 OTU 5 seqs prokMSA_id:003159 AF132773 Synechococcus ATCC700244 str. C9 ATCC 700244. prokMSA_id:072713 AF285260 Synechococcus sp. SH-94-5 prokMSA_id:052093 AF399868 cyanobacterium prokMSA_id:047451 AF445654 cyanobacterium clone SM1B04 prokMSA_id:003251 L35482 str. C9. 2.21.1.3.004 OTU 2 seqs prokMSA_id:022244 AF210048 cyanobacterium CyanoMat32 prokMSA_id:003250 X70770 Microcoleus sp. PCC 7420. 2.21.1.3.005 OTU 1 seq prokMSA_id:003247 AJ000724 Halothece 'MPI 96P605' str. MPI 96P605. 2.21.1.3.006 OTU 9 seqs prokMSA_id:003243 AB001339 Synechocystis sp. PCC 6803. prokMSA_id:003120 AB001339 Synechocystis sp. PCC 6803. prokMSA_id:027910 AB041936 Synechocystis PCC6702 prokMSA_id:018569 AB041937 Synechocystis PCC6714 prokMSA_id:044249 AB041938 Synechocystis PCC6805 prokMSA_id:082137 AY224195 Synechocystis sp. PCC 6803 prokMSA_id:003115 D64000 Synechocystis sp. PCC 6803. prokMSA_id:003117 D90916 Synechocystis sp. PCC 6803. prokMSA_id:003116 X94705 Merismopedia glauca str. B1448-1. 2.21.1.3.007 OTU 89 seqs prokMSA_id:003163 AB012326 Microcystis sp. str. P.R.China. prokMSA_id:003164 AB012327 Microcystis sp. str. P.R.China. prokMSA_id:003130 AB012328 Microcystis viridis str. TAC17. prokMSA_id:003165 AB012329 Microcystis sp. str. Thailand. prokMSA_id:003166 AB012330 Microcystis sp. str. Thailand. prokMSA_id:003131 AB012331 Microcystis viridis str. TAC78. prokMSA_id:003132 AB012332 Microcystis aeruginosa str. TAC71. prokMSA_id:003167 AB012333 Microcystis aeruginosa str. TAC86. prokMSA_id:003133 AB012334 Microcystis wesenbergii str. TAC38. prokMSA_id:003168 AB012335 Microcystis wesenbergii str. TAC52. prokMSA_id:003134 AB012336 Microcystis novacekii str. TAC20. prokMSA_id:003169 AB012337 Microcystis novacekii str. TAC65. prokMSA_id:003170 AB012338 Microcystis ichthyoblabe str. TAC48. prokMSA_id:003177 AB012339 Microcystis ichthyoblabe. prokMSA_id:003171 AB012340 Microcystis aeruginosa str. TAC170. prokMSA_id:027606 AB035549 Microcystis aeruginosa prokMSA_id:025608 AB035550 Microcystis ichthyoblabe prokMSA_id:029068 AB035551 Microcystis novacekii prokMSA_id:045553 AB035552 Microcystis viridis prokMSA_id:028391 AB035553 Microcystis wesenbergii prokMSA_id:052503 AF139292 Microcystis aeruginosa strain UWOCC 001 prokMSA_id:040548 AF139293 Microcystis aeruginosa strain UWOCC 006 prokMSA_id:039102 AF139294 Microcystis aeruginosa strain UWOCC 017 prokMSA_id:048796 AF139295 Microcystis aeruginosa strain UWOCC 019 prokMSA_id:050935 AF139296 Microcystis aeruginosa strain UWOCC 023 prokMSA_id:049423 AF139297 Microcystis aeruginosa strain UWOCC 024 prokMSA_id:052726 AF139298 Microcystis aeruginosa strain UWOCC 026 prokMSA_id:047759 AF139299 Microcystis aeruginosa strain PCC 7806 prokMSA_id:039573 AF139300 Microcystis aeruginosa strain PCC 7820 prokMSA_id:035467 AF139301 Microcystis aeruginosa strain UWOCC 84/1 prokMSA_id:037828 AF139302 Microcystis aeruginosa strain UWOCC AKGV- prokMSA_id:026766 AF139303 Microcystis aeruginosa strain UWOCC AK-1 prokMSA_id:018594 AF139304 Microcystis aeruginosa strain UWOCC AubB1 prokMSA_id:021664 AF139305 Microcystis aeruginosa strain UWOCC Bauld5A prokMSA_id:043518 AF139306 Microcystis sp. 'UWOCC BauldB' prokMSA_id:049574 AF139307 Microcystis sp. 'UWOCC CBS' strain UWOCC CBS prokMSA_id:039760 AF139308 Microcystis sp. 'UWOCC F' strain UWOCC F prokMSA_id:027566 AF139309 Microcystis sp. 'UWOCC K' prokMSA_id:038719 AF139310 Microcystis sp. 'UWOCC MSU28-1' prokMSA_id:018186 AF139311 Microcystis sp. 'UWOCC Q' prokMSA_id:016837 AF139312 Microcystis sp. 'UWOCC BauldE' strain UWOCC BauldE prokMSA_id:041065 AF139313 Microcystis aeruginosa strain UWOCC MSU28-2 prokMSA_id:027662 AF139314 Microcystis aeruginosa strain UWOCC P3 prokMSA_id:028651 AF139315 Microcystis aeruginosa strain UWOCC C1 prokMSA_id:016345 AF139316 Microcystis aeruginosa strain UWOCC C4 prokMSA_id:018622 AF139317 Microcystis aeruginosa strain UWOCC RID-1 prokMSA_id:017617 AF139318 Microcystis aeruginosa strain UWOCC M4 prokMSA_id:034524 AF139319 Microcystis aeruginosa strain UWOCC C5 prokMSA_id:040536 AF139320 Microcystis aeruginosa strain UWOCC MR-A prokMSA_id:040647 AF139321 Microcystis aeruginosa strain UWOCC MR-B prokMSA_id:017755 AF139322 Microcystis aeruginosa strain UWOCC MR-B prokMSA_id:029257 AF139323 Microcystis aeruginosa strain UWOCC MR-C prokMSA_id:051805 AF139324 Microcystis aeruginosa strain UWOCC MR-D prokMSA_id:024627 AF139325 Microcystis aeruginosa strain UWOCC S-15-b prokMSA_id:029230 AF139326 Microcystis aeruginosa strain UWOCC E7 prokMSA_id:040291 AF139327 Microcystis flos-aquae strain UWOCC N prokMSA_id:019980 AF139328 Microcystis flos-aquae strain UWOCC C2 prokMSA_id:035129 AF139329 Microcystis flos-aquae strain UWOCC C3 prokMSA_id:070007 AJ133170 Microcystis sp. strain 130 prokMSA_id:071454 AJ133171 Microcystis sp. strain PCC7941 prokMSA_id:043227 AJ133172 Microcystis sp. strain 199 prokMSA_id:037777 AJ133173 Microcystis sp. strain GL280641 prokMSA_id:042696 AJ133174 Microcystis sp. strain NIES104 prokMSA_id:026154 AJ133175 Microcystis sp. strain 269 prokMSA_id:061780 AJ416156 clone Med0-01 prokMSA_id:068680 AJ438182 Microcystis aeruginosa prokMSA_id:035457 AY065974 Microcystis aeruginosa strain NIER-10008 prokMSA_id:018058 AY065976 Microcystis viridis strain NIER-10020 prokMSA_id:063150 AY121355 Microcystis ichthyoblabe strain KCTC AG10160 prokMSA_id:063148 AY121356 Microcystis aeruginosa strain KCTC AG10159 prokMSA_id:063149 AY121357 Microcystis viridis strain KCTC AG10198 prokMSA_id:060879 AY135894 clone SG2-6 prokMSA_id:003114 D89031 Microcystis aeruginosa str. NIES87. prokMSA_id:003236 D89032 Microcystis aeruginosa str. NIES98. prokMSA_id:003135 D89033 Microcystis viridis str. NIES102. prokMSA_id:003237 D89034 Microcystis wesenbergii str. NIES111. prokMSA_id:003191 U03402 Microcystis aeruginosa PCC 7806. prokMSA_id:003136 U03403 Microcystis aeruginosa str. NIES89. prokMSA_id:003213 U40331 Microcystis sp. str. AWT139. prokMSA_id:003122 U40332 Microcystis viridis. prokMSA_id:003121 U40333 Microcystis wesenbergii. prokMSA_id:003235 U40334 Microcystis wesenbergii. prokMSA_id:003112 U40337 Microcystis aeruginosa. prokMSA_id:003113 U40338 Microcystis aeruginosa. prokMSA_id:003241 U40339 Microcystis aeruginosa. prokMSA_id:003119 U40340 Microcystis aeruginosa. prokMSA_id:003162 U66194 Microcystis sp. str. KND9506. prokMSA_id:003161 Z28699 Microcystis aeruginosa PCC 7806. prokMSA_id:003129 Z28700 Microcystis aeruginosa str. NIES89. 2.21.1.3.008 OTU 3 seqs prokMSA_id:069427 AY157744 Gloeothece sp. PCC 6909 prokMSA_id:096755 AY422695 Gloeothece sp. 'Bad Sachsa_BSC-16-G' prokMSA_id:003240 X78680 Gloeothece membranacea. 2.21.1.3.009 OTU 3 seqs prokMSA_id:003233 AF091109 Spirulina P7 str. P7. prokMSA_id:050782 Y18792 Spirulina sp. strain MPI S4 prokMSA_id:028243 Y18799 Spirulina sp. strain P7 SAG 59.90 2.21.1.3.010 OTU 1 seq prokMSA_id:003232 AB003166 Spirulina subsalsa str. M-223. 2.21.1.3.011 OTU 3 seqs prokMSA_id:003231 AF132782 Cyanobacterium stanieri PCC 7202. prokMSA_id:024829 AF230969 Synechococcus sp. 1-SLR5 prokMSA_id:062923 AF448077 Synechococcus sp. PCC 8806 2.21.1.3.012 OTU 2 seqs prokMSA_id:003230 X75045 unnamed organism. prokMSA_id:003211 X75045 unnamed organism. 2.21.1.3.013 OTU 1 seq prokMSA_id:003208 AF132783 Xenococcus PCC7305 PCC 7305. 2.21.1.3.015 OTU 1 seq prokMSA_id:003206 X84812 "Oscillatoria corallinae" str. CJ1 SAG8.92. 2.21.1.3.017 OTU 2 seqs prokMSA_id:048404 AF132932 Cyanothece sp. PCC 7424 prokMSA_id:003157 AJ000715 Cyanothece sp. PCC 7424. 2.21.1.3.018 OTU 13 seqs prokMSA_id:003125 AB003164 "Oscillatoria rosea" str. M-220. prokMSA_id:003124 AB015059 Synechococcus sp. PCC 7003. prokMSA_id:003126 AB015060 Synechococcus sp. PCC 7117. prokMSA_id:003127 AB015061 Synechococcus sp. PCC 73109. prokMSA_id:046210 AF410931 Synechococcus elongatus prokMSA_id:062925 AF448073 Synechococcus sp. T71 prokMSA_id:062924 AF448074 Synechococcus sp. UH7 prokMSA_id:062922 AF448075 Synechococcus sp. HOG prokMSA_id:055776 AF448076 Synechococcus sp. PCC 8807 prokMSA_id:071525 AF513475 Synechococcus sp. PH40 prokMSA_id:017081 AJ000716 Synechococcus sp. strain PCC 7002 prokMSA_id:079205 AY190174 Synechococcus sp. clone Cym3 prokMSA_id:042888 D88289 Synechococcus sp. 2.21.1.3.019 OTU 4 seqs prokMSA_id:017869 AJ292192 Cyanobacterial symbiont MY2 host: Mycale sp. strain MY2 prokMSA_id:039596 AJ292193 Cyanobacterial symbiont MY3 host: Mycale sp. strain MY3 prokMSA_id:016431 AJ292194 Cyanobacterial symbiont MY4 host: Mycale sp. strain MY4 prokMSA_id:040771 AJ292195 Cyanobacterial symbiont MY17 host: Mycale sp. strain MY17 2.21.1.3.020 OTU 2 seqs prokMSA_id:026117 AF473936 cyanobacterium 128-56 prokMSA_id:016864 AY038527 cyanobacterium 2.21.1.3.021 OTU 1 seq prokMSA_id:017093 AB039000 Gloeocapsa PCC73106 2.21.1.3.022 OTU 2 seqs prokMSA_id:017732 AF474001 cyanobacterium LR-3L prokMSA_id:069731 U96442 Geitlerinema sp. PCC9452 2.21.1.3.025 OTU 17 seqs prokMSA_id:024335 AB039006 Pleurocapsa PCC7319 prokMSA_id:046080 AB039009 Stanieria PCC7301 prokMSA_id:069734 AB058199 Dermocarpa sp. MBIC10001 prokMSA_id:074148 AB058202 Dermocarpa sp. MBIC10004 prokMSA_id:069285 AB058218 Dermocarpa sp. MBIC10056 prokMSA_id:071088 AB058284 Dermocarpa sp. MBIC10765 prokMSA_id:071478 AB058285 Dermocarpa sp. MBIC10766 prokMSA_id:069707 AB058287 Dermocarpa sp. MBIC10768 prokMSA_id:080524 AB074510 Xenococcus sp. PCC 7307 prokMSA_id:080822 AB074511 Pleurocapsa sp. PCC 7314 prokMSA_id:024838 AJ344556 Chroococcidiopsis sp. CCMP1489 strain CCMP1489 prokMSA_id:045775 AJ344559 Dermocarpella incrassata strain SAG 29.84 prokMSA_id:042381 AJ344561 Myxosarcina sp. PCC 7312 strain PCC 7312 prokMSA_id:046462 AJ344564 Pleurocapsa minor strain SAG 4.99 prokMSA_id:039450 AY038729 cyanobacterium clone TAF-A34 prokMSA_id:021475 AY038730 cyanobacterium clone TAF-A202 prokMSA_id:003207 X78681 Pleurocapsa sp. PCC 7516. 2.21.1.3.026 OTU 5 seqs prokMSA_id:087689 AF510969 Lyngbya bouillonii prokMSA_id:086973 AF510970 Lyngbya bouillonii isolate 2 prokMSA_id:046480 AY049750 Lyngbya sp. VP417a prokMSA_id:035119 AY049751 Lyngbya sp. VP417b prokMSA_id:022139 AY049752 Lyngbya sp. NIH309 2.21.1.3.027 OTU 1 seq prokMSA_id:023365 AF423276 soil clone 54-2 2.21.1.3.028 OTU 2 seqs prokMSA_id:042907 AB039004 Chroococcidiopsis PCC6712 prokMSA_id:024455 AJ344557 Chroococcidiopsis sp. PCC 6712 strain PCC 6712 2.21.1.3.029 OTU 2 seqs prokMSA_id:058436 AB045962 Planktothricoides raciborskii strain: NSLA3 prokMSA_id:024958 AF263343 Oscillatoria terebriformis 2.21.1.3.030 OTU 3 seqs prokMSA_id:040359 AF445667 cyanobacterium clone SM1C10 prokMSA_id:025314 AF445673 cyanobacterium clone SM1D04 prokMSA_id:028685 AF445691 cyanobacterium clone SM1F09 2.21.1.3.031 OTU 2 seqs prokMSA_id:059109 AF420444 Oscillatoria spongeliae 520bg prokMSA_id:067019 AF497568 Aphanocapsa feldmani 2.21.1.3.032 OTU 1 seq prokMSA_id:026120 AF284810 Oscillatoria sp. MPI 990BR03 2.21.1.3.033 OTU 1 seq prokMSA_id:026358 AF345914 cyanobacterium 2.21.1.3.034 OTU 1 seq prokMSA_id:069683 AB058249 Cyanobacterium sp. MBIC10216 2.21.1.3.035 OTU 1 seq prokMSA_id:028368 AY038428 glaucocystophycean clone CD5A12 ; chloroplast chloroplast product 2.21.1.3.036 OTU 2 seqs prokMSA_id:028876 AB039008 Stanieria cyanosphaera prokMSA_id:048280 AF132931 Stanieria cyanosphaera 2.21.1.3.037 OTU 1 seq prokMSA_id:029085 AB039001 Synechocystis PCC6308 2.21.1.3.038 OTU 3 seqs prokMSA_id:040423 AF399860 cyanobacterium prokMSA_id:033394 AF399866 cyanobacterium prokMSA_id:034157 AF399867 cyanobacterium 2.21.1.3.039 OTU 1 seq prokMSA_id:033445 AF218376 Oscillatoria sp. UTCC487 2.21.1.3.041 OTU 12 seqs prokMSA_id:055668 AB067575 Gloeocapsa sp. KO38CU6 genes Ile-tRNA 23S and complete prokMSA_id:067720 AB067576 Gloeothece sp. SK40 genes Ile-tRNA 23S and complete prokMSA_id:067719 AB067577 Gloeothece sp. KO11DG genes r Ile-tRNA 23S and complete prokMSA_id:067715 AB067578 Gloeocapsa sp. KO20B5 genes Ile-tRNA 23S and complete prokMSA_id:067713 AB067579 Gloeocapsa sp. KO30D1 genes Ile-tRNA 23S and complete prokMSA_id:067714 AB067580 Gloeothece sp. KO68DGA genes Ile-tRNA 23S and complete prokMSA_id:067712 AB067581 Cyanothece sp. SKTU126 genes Ile-tRNA 23S and complete prokMSA_id:097707 AB116658 Aphanothece sacrum prokMSA_id:093641 AB119259 Aphanothece sacrum prokMSA_id:003158 AF132771 Cyanothece ATCC51142 ATCC 51142. prokMSA_id:027671 AF193247 Symbiont of Climacodium frauenfeldianum prokMSA_id:035028 AF296873 Cyanothece sp. PCC 8801 2.21.1.3.042 OTU 2 seqs prokMSA_id:071326 AJ344552 Chroococcidiopsis sp. BB79.2 SAG 2023 prokMSA_id:035765 AJ344555 Chroococcidiopsis sp. BB96.1 strain SAG 2026 2.21.1.3.043 OTU 3 seqs prokMSA_id:039534 Y18789 Halospirulina sp.'MPI S3' prokMSA_id:072932 Y18790 Halospirulina sp.'CCC Baja-95 Cl.3' prokMSA_id:071513 Y18791 Halospirulina tapeticola strain CCC Baja-95 Cl.2 2.21.1.3.044 OTU 1 seq prokMSA_id:041164 AF259634 prochlorophyte CtaxPhil-25 2.21.1.3.045 OTU 2 seqs prokMSA_id:074772 AF445678 cyanobacterium clone SM1D12 prokMSA_id:044601 AF445707 cyanobacterium clone SM2A06 2.21.1.3.046 OTU 1 seq prokMSA_id:045178 AJ344562 Myxosarcina sp. PCC 7325 strain PCC 7325 2.21.1.3.048 OTU 9 seqs prokMSA_id:036962 AB039021 Symploca PCC8002 prokMSA_id:053953 AF306497 Symploca sp. VP377 prokMSA_id:087114 AF510971 Symploca hydnoides prokMSA_id:087766 AF510972 Lyngbya polychroa prokMSA_id:086792 AF510981 Symploca hydnoides prokMSA_id:087724 AF510983 Symploca hydnoides prokMSA_id:045181 AY032932 Symploca sp. VP642a prokMSA_id:052817 AY032933 Symploca sp. VP642b prokMSA_id:021210 AY032934 Symploca sp. VP642c 2.21.1.3.049 OTU 1 seq prokMSA_id:049254 AB039007 Pleurocapsa PCC7327 2.21.1.3.050 OTU 1 seq prokMSA_id:049732 AF442048 cyanobacterium clone CD1401B9 2.21.1.3.051 OTU 1 seq prokMSA_id:050596 AB064709 clone:NK238 2.21.1.3.052 OTU 1 seq prokMSA_id:056680 AF329394 Spirulina subsalsa complete ; tRNA-Ile complete ; and 23S 2.21.1.3.053 OTU 1 seq prokMSA_id:060862 AY135913 clone SG2-80 2.21.1.3.054 OTU 1 seq prokMSA_id:062919 AF448079 Synechococcus sp. IR11 2.21.1.3.055 OTU 1 seq prokMSA_id:063230 AF523994 clone FW74 2.21.1.3.056 OTU 1 seq prokMSA_id:064411 AY102914 clone BCM3S-35B 2.21.1.3.057 OTU 1 seq prokMSA_id:064430 AY102892 clone BCM3P-14B 2.21.1.3.058 OTU 2 seqs prokMSA_id:067898 AF355382 Microcoleus steenstrupii clone 151-4A prokMSA_id:067882 AF355394 Microcoleus steenstrupii clone 173-2E 2.21.1.3.059 OTU 3 seqs prokMSA_id:067900 AF355379 Microcoleus steenstrupii clone 148-2A prokMSA_id:067894 AF355384 Microcoleus steenstrupii clone 194-2A prokMSA_id:067895 AF355385 Microcoleus steenstrupii clone 194-2B 2.21.1.3.060 OTU 1 seq prokMSA_id:074727 AF445677 cyanobacterium clone SM1D11 2.21.1.3.061 OTU 1 seq prokMSA_id:076610 AB011380 Synechocystis trididemni 2.21.1.3.062 OTU 1 seq prokMSA_id:081172 AJ548893 Scenedesmus sp. chloroplast clone BIOEST-4 2.21.1.3.063 OTU 1 seq prokMSA_id:083349 AY222299 cyanobacterium clone ST01-SN2C 2.21.1.3.064 OTU 2 seqs prokMSA_id:089561 AY327201 clone ZB144 prokMSA_id:088652 AY327205 clone ZB121 2.21.1.3.065 OTU 3 seqs prokMSA_id:089473 AY328558 HOClCi9 prokMSA_id:089070 AY328600 HOClCi51 prokMSA_id:088989 AY328729 DSSD30 2.21.1.3.066 OTU 1 seq prokMSA_id:090624 AY328704 DSSD4 2.21.1.3.067 OTU 1 seq prokMSA_id:090750 AY327200 clone ZB145 2.21.1.3.068 OTU 2 seqs prokMSA_id:094786 AY151723 Antarctic cyanobacterium clone BGC-Fr056 complete prokMSA_id:094315 AY151737 Antarctic cyanobacterium clone BGC-Fr005 2.21.1.3.069 OTU 1 seq prokMSA_id:094687 AY151759 Antarctic cyanobacterium clone Fr285 2.21.1.3.070 OTU 1 seq prokMSA_id:094891 AJ583204 clone S15B-MN24 2.21.1.3.071 OTU 1 seq prokMSA_id:096920 AY422696 clone BSC-16-1 2.21.1.3.072 OTU 1 seq prokMSA_id:097389 AY380791 Cyanobacterium 5.2 s.c. 1 2.21.1.3.999 poor quality 313 seqs prokMSA_id:003137 AB008318 Microcystis aeruginosa str. LMK9508-3. prokMSA_id:003192 AB008319 Microcystis wesenbergii str. LMK9508-4. prokMSA_id:003138 AB008320 Microcystis cf. flos-aquae str. LMK9508-5. prokMSA_id:003193 AB008321 Microcystis sp. str. LMK9508-7. prokMSA_id:003139 AB008322 Microcystis aeruginosa str. LMK9508-8. prokMSA_id:003194 AB008323 Microcystis aeruginosa str. LMK9508-10. prokMSA_id:003214 AB008324 Microcystis sp. str. LMK9508-12. prokMSA_id:003195 AB008325 Microcystis sp. str. LMM9508-4. prokMSA_id:003140 AB008326 Microcystis Microcystis clone 01. prokMSA_id:003141 AB008327 Microcystis Microcystis clone 03. prokMSA_id:003142 AB008328 Microcystis Microcystis clone 04. prokMSA_id:003143 AB008329 Microcystis Microcystis clone 05. prokMSA_id:003144 AB008330 Microcystis Microcystis clone 06. prokMSA_id:003196 AB008331 Microcystis Microcystis clone 07. prokMSA_id:003145 AB008332 Microcystis Microcystis clone 08. prokMSA_id:003146 AB008333 Microcystis Microcystis clone 09. prokMSA_id:003147 AB008334 Microcystis Microcystis clone 10. prokMSA_id:003148 AB023255 Microcystis aeruginosa str. NIES88. prokMSA_id:003215 AB023256 Microcystis aeruginosa str. NIES90. prokMSA_id:003216 AB023257 Microcystis aeruginosa str. NIES91. prokMSA_id:003217 AB023258 Microcystis aeruginosa str. NIES99. prokMSA_id:003218 AB023259 Microcystis aeruginosa str. NIES100. prokMSA_id:003219 AB023260 Microcystis aeruginosa str. NIES101. prokMSA_id:003220 AB023261 Microcystis aeruginosa str. NIES298. prokMSA_id:003221 AB023262 Microcystis aeruginosa str. NIES299. prokMSA_id:003149 AB023263 Microcystis aeruginosa str. TAC157-2. prokMSA_id:003150 AB023264 Microcystis aeruginosa str. TAC169. prokMSA_id:003151 AB023265 Microcystis aeruginosa str. TAC192. prokMSA_id:003197 AB023266 Microcystis wesenbergii str. NIES104. prokMSA_id:003198 AB023267 Microcystis wesenbergii str. NIES105. prokMSA_id:003199 AB023268 Microcystis wesenbergii str. NIES106. prokMSA_id:003200 AB023269 Microcystis wesenbergii str. NIES108. prokMSA_id:003222 AB023270 Microcystis wesenbergii str. NIES109. prokMSA_id:003201 AB023271 Microcystis wesenbergii str. NIES110. prokMSA_id:003202 AB023272 Microcystis wesenbergii str. NIES112. prokMSA_id:003223 AB023273 Microcystis wesenbergii str. NIES604. prokMSA_id:003152 AB023274 Microcystis wesenbergii str. TAC38. prokMSA_id:003203 AB023275 Microcystis wesenbergii str. TAC52-1. prokMSA_id:003204 AB023276 Microcystis wesenbergii str. TAC57-1. prokMSA_id:003153 AB023277 Microcystis viridis str. TAC78. prokMSA_id:003154 AB023278 Microcystis viridis str. TAC92. prokMSA_id:003205 AB023279 Microcystis viridis str. TAC140. prokMSA_id:003224 AB023280 Microcystis ichthyoblabe str. TAC48-1. prokMSA_id:003225 AB023281 Microcystis ichthyoblabe str. TAC51. prokMSA_id:003155 AB023282 Microcystis ichthyoblabe str. TAC91. prokMSA_id:003226 AB023283 Microcystis ichthyoblabe str. TAC125. prokMSA_id:003156 AB023284 Microcystis ichthyoblabe str. TAC146. prokMSA_id:003227 AB023285 Microcystis novacekii str. TAC65-2. prokMSA_id:003228 AB023286 Microcystis novacekii str. TAC66. prokMSA_id:003229 AB023287 Microcystis novacekii str. TAC75. prokMSA_id:028674 AB038530 Microcystis viridis strain:TAC44 prokMSA_id:051951 AB038531 Microcystis viridis strain:TAC45 prokMSA_id:031139 AB038532 Microcystis aeruginosa strain:TAC60 prokMSA_id:074488 AB038533 Microcystis aeruginosa strain:TAC61 prokMSA_id:025861 AB038534 Microcystis aeruginosa strain:TAC69 prokMSA_id:035209 AB038535 Microcystis aeruginosa strain:TAC70 prokMSA_id:033467 AB038536 Microcystis aeruginosa strain:TAC76 prokMSA_id:020257 AB038537 Microcystis aeruginosa strain:TAC80 prokMSA_id:022017 AB038538 Microcystis wesenbergii strain:TAC85 prokMSA_id:045497 AB038539 Microcystis aeruginosa strain:TAC87 prokMSA_id:022444 AB038540 Microcystis aeruginosa strain:TAC95 prokMSA_id:035452 AB038541 Microcystis aeruginosa strain:TAC97 prokMSA_id:032938 AB038542 Microcystis aeruginosa strain:TAC109 prokMSA_id:027401 AB038543 Microcystis aeruginosa strain:TAC110 prokMSA_id:020573 AB038544 Microcystis sp. LMK9508-1 strain:LMK9508-1 prokMSA_id:017804 AB038545 Microcystis sp. LMK9508-16 strain:LMK9508-16 prokMSA_id:050692 AB038546 Microcystis sp. LMM9508-2 strain:LMM9508-2 prokMSA_id:027581 AB038547 Microcystis sp. LMM9508-6 strain:LMM9508-6 prokMSA_id:042290 AB038548 Microcystis sp. LMM9508-7 strain:LMM9508-7 prokMSA_id:021857 AB038549 Microcystis sp. LMM9508-11 strain:LMM9508-11 prokMSA_id:030609 AB038550 Microcystis sp. LMM9509-2 strain:LMM9509-2 prokMSA_id:038070 AB038551 Microcystis wesenbergii strain:LMM9509-a1 prokMSA_id:020522 AB038552 Microcystis aeruginosa prokMSA_id:030276 AF013026 Microcoleus chthonoplastes prokMSA_id:029562 AF223307 epsilon B2M2 prokMSA_id:018098 AF230968 Oscillatoria sp. 2-SLR3 prokMSA_id:036873 AF230970 Aphanothece gelatinosa prokMSA_id:049551 AF266660 cyanobacterium prokMSA_id:019790 AF266661 cyanobacterium prokMSA_id:041764 AF266662 cyanobacterium prokMSA_id:024093 AF266667 cyanobacterium prokMSA_id:036657 AF266668 cyanobacterium prokMSA_id:027208 AF266669 cyanobacterium prokMSA_id:028833 AF266671 cyanobacterium prokMSA_id:022397 AF266672 cyanobacterium prokMSA_id:051729 AF279107 Chroococcidiopsis sp. 029N6904 prokMSA_id:044037 AF279108 Chroococcidiopsis sp. 057 prokMSA_id:021062 AF279109 Chroococcidiopsis sp. 123CH-7 prokMSA_id:046982 AF284799 cyanobacterium DGGE band 11c prokMSA_id:026234 AF284800 cyanobacterium DGGE band 11b prokMSA_id:020239 AF284801 cyanobacterium DGGE band 13a prokMSA_id:073161 AF317510 Geitlerinema sp. PCC 9222 prokMSA_id:040923 AF320089 Halomicronema sp. prokMSA_id:042821 AF320090 Halomicronema sp. TFEP2 prokMSA_id:048525 AF320091 Halomicronema sp. TFEP3 prokMSA_id:038069 AF320092 Halomicronema sp. TFEP4 prokMSA_id:067899 AF355380 Microcoleus steenstrupii clone 150-4A prokMSA_id:067897 AF355381 Microcoleus steenstrupii clone 150-3B prokMSA_id:068262 AF365454 clone BM89MF1BC10 prokMSA_id:068241 AF365478 clone BM89MF1BF9 prokMSA_id:068178 AF365553 clone BT49MF4BB5 prokMSA_id:068158 AF365574 clone BT49MF4BG4 prokMSA_id:068081 AF365662 clone BM89DS6BbD4 prokMSA_id:068071 AF365675 clone BM89DS6BE4 prokMSA_id:067917 AF365855 clone BT60PA10BG2 prokMSA_id:052837 AF392788 clone SCD9 prokMSA_id:032854 AF392789 clone CRH6 prokMSA_id:041949 AF399863 cyanobacterium prokMSA_id:067766 AF423351 cyanobacterium isolate DGGE band Wb prokMSA_id:067767 AF423353 cyanobacterium isolate DGGE band Gb prokMSA_id:067768 AF423354 cyanobacterium isolate DGGE band Gd prokMSA_id:067765 AF423355 cyanobacterium isolate DGGE band Ga prokMSA_id:067762 AF423357 cyanobacterium UNIWG prokMSA_id:055830 AF423358 cyanobacterium isolate DGGE band Lc prokMSA_id:067759 AF423359 cyanobacterium isolate DGGE band Gc prokMSA_id:049522 AF428512 soil crust cyanobacterium clone lichen6 prokMSA_id:047125 AF428522 soil crust cyanobacterium clone lichen16 prokMSA_id:035575 AF428523 soil crust cyanobacterium clone lichen17 prokMSA_id:038291 AF428524 soil crust cyanobacterium clone lichen18 prokMSA_id:040494 AF428531 soil crust cyanobacterium clone lichen25 prokMSA_id:020175 AF428554 soil crust cyanobacterium clone cyano12 prokMSA_id:075954 AF432776 clone S51.42PG prokMSA_id:051607 AF434965 sponge symbiont JACN2 prokMSA_id:042588 AF434966 sponge symbiont JACN6 prokMSA_id:052192 AF441973 cyanobacterium clone CD12A6 prokMSA_id:023555 AF442052 cyanobacterium clone CD1401B7 prokMSA_id:036166 AF442054 cyanobacterium clone CD1401A12 prokMSA_id:017306 AF446265 cyanobacterium FL06F06 prokMSA_id:031941 AF459426 Euhalothece sp. LK-1 prokMSA_id:027244 AF469393 clone 33-PA48B99 prokMSA_id:054138 AF473935 cyanobacterium 128-56 prokMSA_id:029824 AF473964 cyanobacterium 34-25 prokMSA_id:036580 AF473966 cyanobacterium 34-30 prokMSA_id:035631 AF473985 cyanobacterium 68-26 prokMSA_id:067533 AF493840 clone 1 prokMSA_id:067532 AF493842 clone 3 prokMSA_id:067529 AF493843 clone 4 prokMSA_id:067530 AF493844 clone 5 prokMSA_id:067531 AF493846 clone 7 prokMSA_id:067526 AF493847 clone 8 prokMSA_id:067528 AF493848 clone 9 prokMSA_id:067527 AF493850 clone 11 prokMSA_id:067525 AF493851 clone 12 prokMSA_id:072443 AF493852 clone 13 prokMSA_id:067524 AF493853 clone 14 prokMSA_id:067516 AF493856 clone 17 prokMSA_id:070988 AF493857 clone 18 prokMSA_id:069837 AF493858 clone 19 prokMSA_id:072669 AF493859 clone 20 prokMSA_id:070764 AF493861 clone 22 prokMSA_id:055818 AF493862 clone 23 prokMSA_id:072523 AF493863 clone 24 prokMSA_id:067511 AF493866 clone 27 prokMSA_id:067510 AF493867 clone 28 prokMSA_id:081767 AF505924 cyanobacterium NACy06 prokMSA_id:082163 AF505942 cyanobacterium NZCy01 prokMSA_id:081443 AF505943 cyanobacterium NZCy01 prokMSA_id:081137 AF505951 cyanobacterium NZCy04 prokMSA_id:081913 AF505952 cyanobacterium NZCy05 prokMSA_id:082014 AF505953 cyanobacterium NZCy05 prokMSA_id:087310 AF510977 Lyngbya bouillonii isolate 1 prokMSA_id:087932 AF510979 Lyngbya polychroa prokMSA_id:075540 AF538340 isolate ENV-MO-008 prokMSA_id:020240 AJ000717 Euhalothece sp. strain MPI 95AH11 prokMSA_id:017894 AJ000718 Euhalothece sp. strain MPI 96AL06 prokMSA_id:071416 AJ000719 Euhalothece sp. strain MPI 96AL03 prokMSA_id:043885 AJ000720 Euhalothece sp. strain Syn CIP22 prokMSA_id:025353 AJ000721 Aphanothece sp. strain ATCC 43922 prokMSA_id:045745 AJ000722 Euhalothece sp. strain MPI 96P402 prokMSA_id:072706 AJ000723 Gloeothece sp. strain HW-91-Gth.2 prokMSA_id:029890 AJ242752 Chlorella pyrenoidosa chloroplast strain IAM C-101 prokMSA_id:070504 AJ248292 cyanobacterium clone P2.9 prokMSA_id:017478 AJ248293 cyanobacterium clone P2.10 prokMSA_id:070535 AJ248295 cyanobacterium clone P3.1 prokMSA_id:070964 AJ248296 cyanobacterium clone P3.2 prokMSA_id:070511 AJ248297 cyanobacterium clone P3.3 prokMSA_id:027117 AJ248303 cyanobacterium clone P4.8 prokMSA_id:071507 AJ248305 cyanobacterium clone P4.10 prokMSA_id:073482 AJ248306 cyanobacterium clone P5.1 prokMSA_id:072223 AJ248308 cyanobacterium clone P5.5 prokMSA_id:051436 AJ248309 cyanobacterium clone P5.7 prokMSA_id:071912 AJ248312 cyanobacterium clone P6.3 prokMSA_id:071776 AJ248313 cyanobacterium clone P6.4 prokMSA_id:042841 AJ248314 cyanobacterium clone P6.5 prokMSA_id:031229 AJ248315 cyanobacterium clone P6.7 prokMSA_id:052133 AJ248316 cyanobacterium clone P6.9 prokMSA_id:019207 AJ271675 Microcystis flos-aquae strain BMMi14/C prokMSA_id:052054 AJ271676 Microcystis aeruginosa strain BMMi9/C prokMSA_id:030705 AJ271677 Microcystis viridis strain BMMi1/B prokMSA_id:039401 AJ271678 Microcystis wesenbergii strain BMMi20/C prokMSA_id:038113 AJ271679 Microcystis wesenbergii strain BMMi16/B prokMSA_id:042162 AJ271680 Microcystis wesenbergii strain BMMi17/C prokMSA_id:048420 AJ272596 Microcoleus chthonoplastes strain MEL prokMSA_id:019824 AJ272597 Microcoleus chthonoplastes patial strain GN5-1 prokMSA_id:039145 AJ272598 Microcoleus chthonoplastes strain EBD prokMSA_id:044432 AJ272599 Lyngbya sp. MPI-FGP-A prokMSA_id:069888 AJ416161 clone Med0-10 prokMSA_id:061758 AJ416186 clone Sta1-13 prokMSA_id:061752 AJ416193 clone Sta1-42 prokMSA_id:074361 AJ416198 clone Sta1-48 prokMSA_id:072851 AJ416200 clone Sta1-51 prokMSA_id:061706 AJ416238 clone Sta4-18 prokMSA_id:061702 AJ416241 clone Sta4-27 prokMSA_id:061691 AJ416253 clone Sta5-05 prokMSA_id:061677 AJ416273 clone Sta5-44 prokMSA_id:061673 AJ416276 clone Sta6-01 prokMSA_id:063911 AJ493362 clone m1a-4a prokMSA_id:063901 AJ493375 clone m2-2 prokMSA_id:063896 AJ493381 clone m4-4a prokMSA_id:063893 AJ493385 clone m5-4 prokMSA_id:063886 AJ493390 clone m7-4 prokMSA_id:078072 AJ517306 DGGE band C2 prokMSA_id:057061 AJ518484 clone Qui2P1-56 prokMSA_id:057058 AJ518487 clone Qui2P1-61 prokMSA_id:057057 AJ518489 clone Qui2P1-73 prokMSA_id:073625 AJ518568 clone Qui4P2-22 prokMSA_id:074375 AJ518584 clone Qui4P2-43 prokMSA_id:070011 AJ518591 clone Qui4P2-53 prokMSA_id:056972 AJ518600 clone Qui4P2-67 prokMSA_id:056975 AJ518604 clone Qui4P2-75 prokMSA_id:056146 AJ518607 clone Qui4P2-79 prokMSA_id:056964 AJ518617 clone Qui4P4-18 prokMSA_id:082174 AJ548890 Cyanobacterium clone BIOEST-1 prokMSA_id:092563 AJ580973 cyanobacterium DGGE band 8 prokMSA_id:042503 AY037873 cyanobacterium clone CD1B7 prokMSA_id:070227 AY038731 cyanobacterium clone TAF-A226 prokMSA_id:025883 AY065975 Microcystis aeruginosa strain NIER-10001 prokMSA_id:028610 AY074800 Microcystis ichthyoblabe strain NIER-10023 prokMSA_id:051460 AY074801 Oscillatoria sancta strain NIER-10027 prokMSA_id:037389 AY074802 Microcystis novacekii strain NIER-10029 prokMSA_id:060912 AY100325 cyanobacterium isolate DGGE band b prokMSA_id:060910 AY100328 cyanobacterium isolate DGGE band e prokMSA_id:060911 AY100329 cyanobacterium isolate DGGE band f prokMSA_id:055756 AY100495 Synechocystis sp. WH 8501 prokMSA_id:070090 AY100496 cyanobacterium clone TA3095_7 prokMSA_id:073934 AY100497 cyanobacterium clone TA3122a_1_7 prokMSA_id:069530 AY100498 cyanobacterium clone TA3122a_8_11 prokMSA_id:069279 AY100499 cyanobacterium clone TA5380_1_27 prokMSA_id:073431 AY100500 cyanobacterium clone TA3122a_12_17 prokMSA_id:074162 AY100501 cyanobacterium clone TA5380_28_36 prokMSA_id:072377 AY100502 cyanobacterium clone TA3015_1_7 prokMSA_id:069050 AY100503 cyanobacterium clone TA5380_37_44 prokMSA_id:072668 AY100506 cyanobacterium clone TA3095_8 prokMSA_id:069721 AY100507 cyanobacterium clone TA3015_25 prokMSA_id:055411 AY100508 cyanobacterium clone TA3015_11_15 prokMSA_id:073635 AY100509 cyanobacterium clone TA3060_30_31 prokMSA_id:072983 AY100510 cyanobacterium clone TA3060_32 prokMSA_id:069772 AY100511 cyanobacterium clone TA3060_33 prokMSA_id:069643 AY100512 cyanobacterium clone TA3060_11_23 prokMSA_id:072135 AY100515 cyanobacterium clone TA3095_9 prokMSA_id:055573 AY100519 cyanobacterium CL7.2_10 prokMSA_id:060851 AY135920 clone SG2-114 prokMSA_id:076808 AY150922 cyanobacterium clone uv10 prokMSA_id:094555 AY151741 Antarctic cyanobacterium clone BGC-Fr020 prokMSA_id:094302 AY151742 Antarctic cyanobacterium clone BGC-Fr023 prokMSA_id:095172 AY151747 Antarctic cyanobacterium clone BGC-Fr067 prokMSA_id:076976 AY153454 cyanobacterium isolate DGGE gel band B7-17 prokMSA_id:075437 AY153463 cyanobacterium isolate clone5-33 prokMSA_id:079400 AY186812 cyanobacterium clone uv10 prokMSA_id:085365 AY241546 Marine HP43 prokMSA_id:090148 AY304529 Dpcom79 prokMSA_id:089176 AY323171 cyanobacterium clone A115-7 prokMSA_id:092495 AY354464 cyanobacterium isolate DGGE gel band R1A prokMSA_id:093040 AY354468 cyanobacterium isolate DGGE gel band R5A prokMSA_id:094057 AY360978 clone CL82 prokMSA_id:094207 AY360979 clone JL63 prokMSA_id:093529 AY360981 clone JD84 prokMSA_id:093383 AY360982 clone CD54 prokMSA_id:093181 AY360983 clone JL78 prokMSA_id:093218 AY360984 clone CL78 prokMSA_id:093976 AY360985 clone CD72 prokMSA_id:093283 AY360986 clone CL65 prokMSA_id:093275 AY360987 clone JD45 prokMSA_id:094228 AY360988 clone CD92 prokMSA_id:093603 AY360996 clone JL76 prokMSA_id:003234 NONE Synechocystis sp. PCC 6308. prokMSA_id:003212 NONE Synechocystis sp. PCC 6906. prokMSA_id:003118 NONE Myxosarcina sp. PCC 7312. prokMSA_id:003123 NONE Dermocarpa sp. PCC 7437. prokMSA_id:003128 NONE Gloeocapsa sp. PCC 73106. prokMSA_id:003242 NONE Gloeothece membranacea PCC 6501. prokMSA_id:003239 NONE Pleurocapsa sp. PCC 7321. prokMSA_id:003238 NONE Spirulina sp. PCC 6313. prokMSA_id:003189 U53589 Microcystis aeruginosa str. 2385. prokMSA_id:003190 U53590 Microcystis aeruginosa str. 2386. prokMSA_id:018797 U81653 clone vadinBA37 prokMSA_id:028615 U96444 Gloeothece rupestris prokMSA_id:003178 Y12604 Microcystis aeruginosa str. NIVA-CYA 31. prokMSA_id:003179 Y12605 Microcystis aeruginosa str. NIVA-CYA 123/1. prokMSA_id:003180 Y12606 Microcystis aeruginosa str. NIVA-CYA 166. prokMSA_id:003181 Y12607 Microcystis aeruginosa str. NIVA-CYA 118/2. prokMSA_id:003182 Y12608 Microcystis botrys str. NIVA-CYA 161/1. prokMSA_id:003183 Y12609 Microcystis botrys str. NIVA-CYA 264. prokMSA_id:003184 Y12610 Microcystis cf. flos-aquae 'NIVA-CYA 144' str. NIVA-CYA 144. prokMSA_id:003185 Y12611 Microcystis cf. ichthyoblabe 'NIVA-CYA 279' str. NIVA-CYA 279. prokMSA_id:003186 Y12612 Microcystis viridis str. NIVA-CYA 122/2. prokMSA_id:003187 Y12613 Microcystis viridis str. NIVA-CYA 169/7. prokMSA_id:003188 Y12614 Microcystis cf. wesenbergii 'NIVA-CYA 172/5' str. NIVA-CYA 172/5. prokMSA_id:023460 Y18794 Spirulina sp. strain MPI S1 prokMSA_id:017761 Y18795 Spirulina sp. strain MPI S2 prokMSA_id:031062 Y18796 Spirulina sp. strain UBMM Bo 89 prokMSA_id:018016 Y18797 Spirulina sp. strain UBMM Hi 45 prokMSA_id:043837 Z82775 C.aeruginosa strain NIVA-CYA 258/2 prokMSA_id:003210 Z82777 Dermocarpa violacea PCC 7301. prokMSA_id:003172 Z82783 Microcystis aeruginosa str. NIVA-CYA 228/1. prokMSA_id:003173 Z82784 Microcystis aeruginosa str. NIVA-CYA 43 ATCC 22663. prokMSA_id:003174 Z82785 Microcystis aeruginosa str. NIVA-CYA 57. prokMSA_id:003175 Z82786 Microcystis aeruginosa str. NIVA-CYA 143. prokMSA_id:024133 Z82787 S.subsalsa strain NIVA-CYA 163 prokMSA_id:022124 Z82788 S.subsalsa strain NIVA-CYA 164 prokMSA_id:003209 Z82807 Dermocarpella incrassata PCC 7326. prokMSA_id:003176 Z82808 Microcystis sp. str. NIVA-CYA 324/1. prokMSA_id:003160 Z82810 Pleurocapsa minor PCC 7327. 2.21.1.4 LEPTOLYNGBYA_GROUP 134 seqs 2.21.1.4.001 OTU 16 seqs prokMSA_id:003282 AB003163 "Oscillatoria" sp. str. M-117. prokMSA_id:003283 AB003169 Phormidium sp. str. M-99. prokMSA_id:003281 AF132793 "Plectonema boryanum" UTEX 485. prokMSA_id:043289 AF218368 Phormidium molle prokMSA_id:039175 AF218372 Phormidium tenue prokMSA_id:045010 AF337651 Phormidium pachydematicum prokMSA_id:041034 AF337652 Phormidium tenue prokMSA_id:093448 AY239592 Leptolyngbya sp. SEV5-3-C2 prokMSA_id:094198 AY239593 Leptolyngbya sp. SEV5-3-C19 prokMSA_id:093642 AY239594 Leptolyngbya sp. SEV5-1-C5 prokMSA_id:093570 AY239595 Leptolyngbya sp. SEV5-3-C28 prokMSA_id:093782 AY239596 Leptolyngbya sp. SEV4-3-C1 prokMSA_id:093379 AY239597 Leptolyngbya sp. SEV4-3-C2 prokMSA_id:093335 AY239598 Leptolyngbya crispata SEV4-3-C6 prokMSA_id:093415 AY239599 Leptolyngbya crispata SEV1-1-C1 prokMSA_id:003280 X84808 Leptolyngbya foveolarum str. Komarek 1964/112. 2.21.1.4.002 OTU 4 seqs prokMSA_id:003276 AF076164 unnamed organism. prokMSA_id:003277 AF076165 unnamed organism. prokMSA_id:094377 AY151735 Antarctic cyanobacterium clone Fr397 complete prokMSA_id:094957 AY151754 Antarctic cyanobacterium clone Fr025 2.21.1.4.003 OTU 2 seqs prokMSA_id:003273 AF076158 unnamed organism. prokMSA_id:003275 AF076161 unnamed organism. 2.21.1.4.004 OTU 2 seqs prokMSA_id:003274 AF076159 unnamed organism. prokMSA_id:094266 AY239604 Leptolyngbya sp. SV1-MK-52 2.21.1.4.005 OTU 2 seqs prokMSA_id:003270 AJ007374 str. WH7B. prokMSA_id:003271 AJ007375 str. WH12. 2.21.1.4.006 OTU 1 seq prokMSA_id:003269 AF170768 clone QSSC8L-8. 2.21.1.4.007 OTU 1 seq prokMSA_id:003268 AF170766 clone QSSC8L-6. 2.21.1.4.008 OTU 2 seqs prokMSA_id:003266 AF170759 str. QSSC3-B. prokMSA_id:003267 AF170764 clone QSSC8L-4. 2.21.1.4.009 OTU 2 seqs prokMSA_id:093754 AY239600 Leptolyngbya sp. CNP1-B3-C9 prokMSA_id:003265 X84809 Leptolyngbya sp. str. VRUC 135 Albertano 1985/1. 2.21.1.4.010 OTU 1 seq prokMSA_id:003263 L22047 clone OPI-8. 2.21.1.4.011 OTU 4 seqs prokMSA_id:003261 AF076162 unnamed organism. prokMSA_id:003262 AF076163 unnamed organism. prokMSA_id:040204 AY038733 cyanobacterium clone TAF-B74 prokMSA_id:003255 NONE Chamaesiphon subglobosus PCC 7430. 2.21.1.4.012 OTU 1 seq prokMSA_id:003260 AF076160 unnamed organism. 2.21.1.4.013 OTU 3 seqs prokMSA_id:003259 AB015062 Synechococcus sp. PCC 7335. prokMSA_id:003257 AF170781 clone QSSC9L-3. prokMSA_id:003258 AF170791 clone QSSC9L-13. 2.21.1.4.014 OTU 1 seq prokMSA_id:003256 AF170765 clone QSSC8L-5. 2.21.1.4.015 OTU 1 seq prokMSA_id:019539 AF399869 cyanobacterium OLI-01 2.21.1.4.016 OTU 3 seqs prokMSA_id:073716 AF317503 Oscillatoria amphigranulata strain 11-3 prokMSA_id:070722 AF317504 Oscillatoria amphigranulata strain 19-2 prokMSA_id:074082 AF317505 Oscillatoria amphigranulata strain 23-3 2.21.1.4.017 OTU 4 seqs prokMSA_id:069689 AB058201 Phormidium sp. MBIC10003 prokMSA_id:069541 AB058209 LPP-group MBIC10012 prokMSA_id:070492 AB058225 LPP-group MBIC10087 prokMSA_id:044982 AF410934 Oscillatoria limnetica 2.21.1.4.018 OTU 1 seq prokMSA_id:028591 AF399861 cyanobacterium 2.21.1.4.019 OTU 1 seq prokMSA_id:029805 AF218371 Phormidium autumnale 2.21.1.4.020 OTU 1 seq prokMSA_id:031912 AB039003 Fischerella muscicola 2.21.1.4.021 OTU 2 seqs prokMSA_id:036979 AF263344 Oscillatoria sp. J-24-Osc prokMSA_id:071468 AF317508 Oscillatoria sp. OH25 2.21.1.4.022 OTU 1 seq prokMSA_id:040082 AF216946 Synechococcus PCC7902 2.21.1.4.023 OTU 1 seq prokMSA_id:056375 AF406549 prasinophycean clone AEGEAN_115 ; chloroplast chloroplast product 2.21.1.4.024 OTU 1 seq prokMSA_id:057549 AY163573 Acaryochloris marina strain MBIC 11017 2.21.1.4.025 OTU 1 seq prokMSA_id:051795 AB042857 Phormidium tenue 2.21.1.4.026 OTU 1 seq prokMSA_id:062921 AF448078 Synechococcus sp. PCC 7336 2.21.1.4.027 OTU 2 seqs prokMSA_id:066519 AY100567 clone cvf74053 prokMSA_id:066484 AY100606 clone cvf61044 2.21.1.4.028 OTU 1 seq prokMSA_id:067764 AF423356 cyanobacterium TFWG 2.21.1.4.029 OTU 2 seqs prokMSA_id:067885 AF355398 Leptolyngbya schmidlei clone 145-A3 prokMSA_id:093455 AY239602 Leptolyngbya sp. CNP1-Z1-C2 2 2.21.1.4.030 OTU 1 seq prokMSA_id:070486 AY054298 Synechococcus sp. G2.1 2.21.1.4.031 OTU 2 seqs prokMSA_id:072108 AF317506 Leptolyngbya sp. PCC 9207 prokMSA_id:074282 AF317507 Leptolyngbya sp. PCC 9221 2.21.1.4.032 OTU 1 seq prokMSA_id:087328 AY293560 phototrophic eukaryote clone FL14H04 ; chloroplast chloroplast product 2.21.1.4.033 OTU 1 seq prokMSA_id:093355 AY239605 Leptolyngbya sp. SV1-MK-49 2.21.1.4.034 OTU 1 seq prokMSA_id:093660 AY239591 Leptolyngbya sp. SEV5-5-C6 2.21.1.4.036 OTU 1 seq prokMSA_id:094404 AY151729 Antarctic cyanobacterium clone Fr127 complete 2.21.1.4.037 OTU 1 seq prokMSA_id:094503 AY151732 Antarctic cyanobacterium clone Fr239 complete 2.21.1.4.039 OTU 5 seqs prokMSA_id:094351 AY151727 Antarctic cyanobacterium clone Fr094 complete prokMSA_id:094648 AY151730 Antarctic cyanobacterium clone Fr132 complete prokMSA_id:094733 AY151733 Antarctic cyanobacterium clone Fr297 complete prokMSA_id:094766 AY151757 Antarctic cyanobacterium clone Fr246 prokMSA_id:095064 AY151763 Antarctic cyanobacterium clone Fr396 2.21.1.4.040 OTU 1 seq prokMSA_id:095047 AY151724 Antarctic cyanobacterium clone Fr005 complete 2.21.1.4.041 OTU 1 seq prokMSA_id:096022 AY422697 clone BSC-16-2 2.21.1.4.999 poor quality 54 seqs prokMSA_id:056455 AB094350 Aphanothece sacrum prokMSA_id:028034 AF266657 cyanobacterium prokMSA_id:024779 AF266666 cyanobacterium prokMSA_id:037521 AF345920 cyanobacterium prokMSA_id:046945 AF353281 Tui1-3 prokMSA_id:068092 AF365649 clone BM89DS6BB6 prokMSA_id:060664 AF406468 prasinophycean clone AEGEAN_115_27F ; chloroplast chloroplast product prokMSA_id:060661 AF406470 prasinophycean clone AEGEAN_139_27F ; chloroplast chloroplast product prokMSA_id:055951 AF423350 cyanobacterium isolate DGGE band Wa prokMSA_id:022800 AF428509 soil crust cyanobacterium clone lichen3 prokMSA_id:032557 AF428525 soil crust cyanobacterium clone lichen19 prokMSA_id:046412 AF428528 soil crust cyanobacterium clone lichen22 prokMSA_id:022014 AF428532 soil crust cyanobacterium clone lichen26 prokMSA_id:039530 AF428535 soil crust cyanobacterium clone lichen29 prokMSA_id:067519 AF493855 clone 16 prokMSA_id:081225 AF505885 cyanobacterium ItalyCy03 prokMSA_id:081977 AF505886 cyanobacterium ItalyCy04 prokMSA_id:081054 AF505887 cyanobacterium ItalyCy05 prokMSA_id:081061 AF505893 cyanobacterium JapanCy04 prokMSA_id:081339 AF505903 cyanobacterium JapanCy07 prokMSA_id:081275 AF505904 cyanobacterium JapanCy08 prokMSA_id:081809 AF505913 cyanobacterium JapanCy12 prokMSA_id:081895 AF505914 cyanobacterium JapanCy12 prokMSA_id:081546 AF505915 cyanobacterium JapanCy13 prokMSA_id:081350 AF505916 cyanobacterium JapanCy14 prokMSA_id:017322 AJ245639 Synechocystis-like cyanobacterium BAC 9721 prokMSA_id:072974 AJ248298 cyanobacterium clone P3.4 prokMSA_id:077736 AJ517307 DGGE band C1 prokMSA_id:064889 AY095891 plastid pT-434 prokMSA_id:060908 AY100327 cyanobacterium isolate DGGE band d prokMSA_id:094816 AY151740 Antarctic cyanobacterium clone BGC-Fr019 prokMSA_id:094510 AY151753 Antarctic cyanobacterium clone Fr023 prokMSA_id:094665 AY151755 Antarctic cyanobacterium clone Fr044 prokMSA_id:094810 AY151756 Antarctic cyanobacterium clone Fr114 prokMSA_id:095167 AY151758 Antarctic cyanobacterium clone Fr252 prokMSA_id:094673 AY151761 Antarctic cyanobacterium clone Fr311 prokMSA_id:094768 AY151762 Antarctic cyanobacterium clone Fr350 prokMSA_id:094962 AY151764 Antarctic cyanobacterium clone Fr401 prokMSA_id:094964 AY151765 Antarctic cyanobacterium clone FrE203 prokMSA_id:094340 AY151770 Antarctic cyanobacterium isolate DGGE gel band FrF5 prokMSA_id:075380 AY153448 cyanobacterium isolate DGGE gel band C1 prokMSA_id:076320 AY153458 cyanobacterium isolate DGGE gel band B15 prokMSA_id:070920 AY157926 Plectonema boryanum prokMSA_id:072989 AY157927 Leptolyngbya sp. PCC 7410 prokMSA_id:091005 AY344434 clone K8u-6 prokMSA_id:092702 AY354465 cyanobacterium isolate DGGE gel band R2A prokMSA_id:093871 AY361001 clone CD94 prokMSA_id:093562 AY361002 clone CD31 prokMSA_id:003264 L04709 Octopus Spring microbial mat from Yellowstone NP clone I. prokMSA_id:003272 L35483 str. C9. prokMSA_id:003278 NONE "Oscillatoria amphigranulata" str. CCC NZ-concert-Oa. prokMSA_id:003279 NONE Leptolyngbya boryanum PCC 73110. prokMSA_id:003254 U09826 clone JAP606. prokMSA_id:003284 X84810 Leptolyngbya boryanum PCC 73110. 2.21.1.5 SYN.LIVIDUS_GROUP 2 seqs 2.21.1.5.999 poor quality 2 seqs prokMSA_id:003285 NONE Synechococcus lividus str. Y-7B7C-S. prokMSA_id:003286 X67088 Thermodesulfobacterium commune. 2.21.1.6 PHORMIDIUM_GROUP 58 seqs 2.21.1.6.001 OTU 1 seq prokMSA_id:003296 X62080 Phormidium "ectocarpi" str. CCAP 1462/5. 2.21.1.6.005 OTU 4 seqs prokMSA_id:003288 AB003168 "Oscillatoria neglecta" str. M-82. prokMSA_id:034894 AB039012 Leptolyngbya PCC7104 prokMSA_id:038561 AJ133106 Oscillatoria sp. prokMSA_id:093994 AY239601 Leptolyngbya sp. CNP1-Z1-C2 2.21.1.6.006 OTU 2 seqs prokMSA_id:003287 X62685 Phormidium minutum str. D5. prokMSA_id:042115 X62686 P.minutum part 2 2.21.1.6.007 OTU 2 seqs prokMSA_id:052706 AB039011 Leptolyngbya PCC7375 prokMSA_id:017509 X62465 P.ectocarpi N182 fragment 2.21.1.6.008 OTU 1 seq prokMSA_id:069558 AB058200 Phormidium sp. MBIC10002 2.21.1.6.009 OTU 1 seq prokMSA_id:030790 AF410932 Leptolyngbya thermalis 2.21.1.6.010 OTU 1 seq prokMSA_id:069650 AB058219 Phormidium sp. MBIC10070 2.21.1.6.011 OTU 1 seq prokMSA_id:048967 Y18798 Spirulina laxissima strain SAG B256.80 2.21.1.6.012 OTU 1 seq prokMSA_id:049604 AF320093 Halomicronema sp. TFEP1 2.21.1.6.013 OTU 1 seq prokMSA_id:056488 AB058224 LPP-group MBIC10086 2.21.1.6.017 OTU 14 seqs prokMSA_id:073558 AB058267 LPP-group MBIC10597 prokMSA_id:003294 AF076157 unnamed organism. prokMSA_id:003293 AF091110 "Plectonema F3" str. F3. prokMSA_id:003289 AF170757 str. QSSC5cya. prokMSA_id:003290 AF170758 str. QSSC8cya. prokMSA_id:003291 AF170760 str. QSSC5-B. prokMSA_id:003292 AF170782 clone QSSC9L-4. prokMSA_id:069827 AY038732 cyanobacterium clone TAF-B22 prokMSA_id:094566 AY151722 Antarctic cyanobacterium clone BGC-Fr054 complete prokMSA_id:094617 AY151750 Antarctic cyanobacterium clone BGC-Fr073 prokMSA_id:083595 AY250870 cyanobacterium clone FBP256 prokMSA_id:085621 AY250874 cyanobacterium clone FBP290 prokMSA_id:082678 AY250877 cyanobacterium clone FBP341 prokMSA_id:085304 AY250881 cyanobacterium clone FBP403 2.21.1.6.018 OTU 1 seq prokMSA_id:091721 AY344430 clone K2-S-25 2.21.1.6.999 poor quality 28 seqs prokMSA_id:043616 AF230971 Phormidium mucicola prokMSA_id:035517 AF263342 Oscillatoria sp. Ant-SOS prokMSA_id:039801 AF284791 Oscillatoriacean cyanobacterium prokMSA_id:017100 AF284795 cyanobacterium DGGE band 16b prokMSA_id:038965 AF289893 Low G+C gram positive Kmlps3-23 prokMSA_id:074561 AF295635 Cyanobacterium NW4194 prokMSA_id:070940 AF365785 clone BM89PA1BbC9 prokMSA_id:056110 AF365825 clone BT60PA10BC2 prokMSA_id:067946 AF365828 clone BT60PA10BC6 prokMSA_id:067769 AF423352 cyanobacterium isolate DGGE band Wc prokMSA_id:029780 AF446263 cyanobacterium FL08E07 prokMSA_id:072927 AF454311 plastid clone ML110M-14 prokMSA_id:063808 AF454325 plastid clone ML310M-20 prokMSA_id:055505 AF454343 plastid clone ML602M-10 prokMSA_id:038806 AF473979 cyanobacterium 34-67 prokMSA_id:022096 AJ232809 clone TRE26 prokMSA_id:070313 AJ296588 DGGE band PSBAC-8 prokMSA_id:016963 AJ419642 clone R21 prokMSA_id:047382 AY038507 cyanobacterium clone CD1H3 prokMSA_id:095021 AY151738 Antarctic cyanobacterium clone BGC-Fr006 prokMSA_id:094720 AY151744 Antarctic cyanobacterium clone BGC-Fr030 prokMSA_id:094395 AY151745 Antarctic cyanobacterium clone BGC-Fr044 prokMSA_id:095097 AY151746 Antarctic cyanobacterium clone BGC-Fr060 prokMSA_id:003295 NONE Phormidium "ectocarpi" PCC 7375. prokMSA_id:024503 U70722 prasinophyte clone OM255 prokMSA_id:051034 X62081 P.ectocarpi Part 3 prokMSA_id:039867 X62082 P.ectocarpi Part 2 prokMSA_id:003297 X62464 Phormidium "ectocarpi" str. N182. 2.21.1.7 PRTX.HOLLANDICA 1 seq 2.21.1.7.999 poor quality 1 seq prokMSA_id:003298 NONE Prochlorothrix hollandica. 2.21.1.8 MICROCYSTIS_GROUP 32 seqs 2.21.1.8.001 OTU 1 seq prokMSA_id:003308 U40336 Microcystis holsatica. 2.21.1.8.002 OTU 1 seq prokMSA_id:003307 U40335 Microcystis elabens. 2.21.1.8.003 OTU 4 seqs prokMSA_id:003301 AF132792 Prochlorothrix hollandica. prokMSA_id:044671 AJ006285 cyanobacterium clone LD22 prokMSA_id:003302 AJ007866 clone LD16. prokMSA_id:003306 AJ007907 Prochlorothrix hollandica. 2.21.1.8.004 OTU 1 seq prokMSA_id:003305 AF170756 str. QSSC3cya. 2.21.1.8.005 OTU 3 seqs prokMSA_id:033952 AJ006283 cyanobacterium clone LD15 prokMSA_id:003304 AJ007864 clone LD7. prokMSA_id:047418 AJ007865 cyanobacterium clone LD5 2.21.1.8.006 OTU 6 seqs prokMSA_id:028050 AF132930 Synechococcus sp. PCC 7942 prokMSA_id:050219 AF216949 Synechococcus PCC7943 prokMSA_id:081974 AY224194 Synechococcus sp. BD-1 prokMSA_id:003303 D88288 Synechococcus sp. PCC 7942. prokMSA_id:044418 U87503 marine prokMSA_id:003299 X03538 Synechococcus sp. PCC 6301. 2.21.1.8.007 OTU 1 seq prokMSA_id:017697 AF212922 Planktothrix sp. FP1 2.21.1.8.008 OTU 1 seq prokMSA_id:065578 AY095382 yard-trimming-compost clone S-10 2.21.1.8.999 poor quality 14 seqs prokMSA_id:068250 AF365468 clone BM89MF1BE11 prokMSA_id:068239 AF365482 clone BM89MF1BG8 prokMSA_id:048019 AH005026 marine 5' prokMSA_id:044641 AH005031 marine 5' prokMSA_id:072592 AJ006286 cyanobacterium clone LD25 prokMSA_id:079673 AJ534944 Prochlorothrix scandica prokMSA_id:080908 AJ534945 Prochlorothrix sp. country Germany prokMSA_id:003300 U87479 clone pS-4R. prokMSA_id:021212 U87485 marine 5' prokMSA_id:038506 U87486 marine 3' prokMSA_id:044093 U87500 marine 3' prokMSA_id:051673 Z82780 S.leopoliensis strain NIVA-CYA 20 PCC 6301 prokMSA_id:069786 Z82781 Prochlorothrix sp. strain NIVA 8/90 prokMSA_id:054820 Z82782 P.hollandica strain NIVA 5/89 2.21.1.9 PRC.MARINUS_GROUP 497 seqs 2.21.1.9.007 OTU 275 seqs prokMSA_id:003374 AB001724 Microcystis elabens str. NIES42. prokMSA_id:003346 AB015058 Synechococcus sp. PCC 7001. prokMSA_id:073727 AB058205 Synechococcus sp. MBIC10007 prokMSA_id:070678 AB058226 Synechococcus sp. MBIC10089 prokMSA_id:069228 AB058250 Synechococcus sp. MBIC10224 prokMSA_id:071906 AB058264 Synechococcus sp. MBIC10456 prokMSA_id:069178 AB058265 Synechococcus sp. MBIC10459 prokMSA_id:043613 AB060934 cyanobacterium clone:B5 prokMSA_id:022119 AB060938 cyanobacterium clone:B7 prokMSA_id:037672 AB060940 Synechococcus sp. OK10 prokMSA_id:024076 AB060942 Synechococcus sp. OK01 prokMSA_id:078045 AB076249 Synechococcus sp. KFM001 prokMSA_id:089557 AE017162 Prochlorococcus marinus subsp. marinus str. CCMP1375 section 2 of 6 of the complete genome prokMSA_id:003355 AF001466 Prochlorococcus CCMP1378 str. CCMP1378. prokMSA_id:003356 AF001467 Prochlorococcus NATL2A str. NATL2A. prokMSA_id:003357 AF001468 Prochlorococcus MIT9107 str. MIT9107. prokMSA_id:003334 AF001469 Prochlorococcus MIT9303 str. MIT9303. prokMSA_id:003358 AF001470 Prochlorococcus NATL2 str. NATL2. prokMSA_id:003359 AF001471 Prochlorococcus PAC1 str. PAC1. prokMSA_id:003360 AF001472 Prochlorococcus GP2 str. GP2. prokMSA_id:003361 AF001473 Prochlorococcus SB str. SB. prokMSA_id:003362 AF001474 Prochlorococcus TATL1A str. TATL1A. prokMSA_id:003363 AF001475 Prochlorococcus TATL1B str. TATL1B. prokMSA_id:003364 AF001476 Prochlorococcus TATL2 str. TATL2. prokMSA_id:003335 AF001477 Synechococcus PCC6307 PCC 6307. prokMSA_id:003338 AF001480 Synechococcus WH8101 str. WH8101. prokMSA_id:003376 AF053396 Prochlorococcus MIT9302 str. MIT9302. prokMSA_id:003347 AF053397 Prochlorococcus MIT9303 str. MIT9303. prokMSA_id:003377 AF053398 Prochlorococcus MIT9312 str. MIT9312. prokMSA_id:003348 AF053399 Prochlorococcus MIT9313 str. MIT9313. prokMSA_id:003339 AF081834 Synechococcus WH7803 str. WH7803. prokMSA_id:003343 AF098370 str. ACE. prokMSA_id:003344 AF098371 str. PENDANT. prokMSA_id:003345 AF098372 str. ABRAXAS. prokMSA_id:003372 AF098373 str. P211. prokMSA_id:003373 AF098374 str. P212. prokMSA_id:003365 AF099991 Prochlorococcus marine ENATL1. prokMSA_id:003366 AF099992 Prochlorococcus marine ENATL2. prokMSA_id:003367 AF099993 Prochlorococcus marine ENATL3. prokMSA_id:003368 AF099994 Prochlorococcus marine ENATL4. prokMSA_id:003369 AF099995 Prochlorococcus marine ENATL5. prokMSA_id:003370 AF099996 Prochlorococcus marine ENATL6. prokMSA_id:003371 AF099997 Prochlorococcus marine ENATL7. prokMSA_id:003351 AF115268 Prochlorococcus MIT9201 str. MIT9201. prokMSA_id:003352 AF115269 Prochlorococcus MIT9202 str. MIT9202. prokMSA_id:003353 AF115270 Prochlorococcus MIT9211 str. MIT9211. prokMSA_id:021352 AF133833 Prochlorococcus sp. CCMP1426 prokMSA_id:033141 AF133834 Prochlorococcus sp. NATL1 prokMSA_id:003331 AF142916 Prochlorococcus PENDANT-2. prokMSA_id:003330 AF142917 Prochlorococcus PENDANT-4. prokMSA_id:003332 AF146234 clone CLEAR-10. prokMSA_id:003375 AF180967 Prochlorococcus marinus PCC 9511. prokMSA_id:036958 AF195451 Synechococcus kpa27rc prokMSA_id:046690 AF216944 Synechococcus PCC6904 prokMSA_id:037989 AF216945 Synechococcus PCC7009 prokMSA_id:016741 AF216947 Synechococcus PCC7918 prokMSA_id:046334 AF216948 Synechococcus PCC7920 prokMSA_id:022911 AF216950 Synechococcus PCC9005 prokMSA_id:029390 AF216951 Synechococcus sp. PS680 prokMSA_id:038616 AF216952 Synechococcus sp. PS715 prokMSA_id:045601 AF216953 Synechococcus sp. PS717 prokMSA_id:030851 AF216954 Synechococcus sp. PS721 prokMSA_id:033656 AF216955 Synechococcus sp. PS723 prokMSA_id:023065 AF245618 Synechococcus NAC1-5 prokMSA_id:049782 AF311217 Prochlorococcus marinus str. EQPAC1 prokMSA_id:033102 AF311218 Prochlorococcus marinus subsp. pastoris str. NATL1 prokMSA_id:030769 AF311219 Prochlorococcus marinus subsp. pastoris str. NATL2 prokMSA_id:038890 AF311220 Prochlorococcus marinus str. TAK9803-2 prokMSA_id:021853 AF311291 Synechococcus sp. WH 7803 prokMSA_id:033530 AF311292 Synechococcus sp. WH 8018 prokMSA_id:047172 AF311293 Synechococcus sp. WH 8103 prokMSA_id:053150 AF317071 Synechococcus sp. BO8801 ; internal transcribed spacer 1 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053228 AF317072 Synechococcus sp. BO8806 ; internal transcribed spacer 1 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054219 AF317073 Synechococcus sp. BO8805 ; internal transcribed spacer 1 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:052928 AF317074 Synechococcus sp. BO8807 ; internal transcribed spacer 1 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053923 AF317075 Synechococcus sp. BO9404 ; internal transcribed spacer 1 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053331 AF317076 Synechococcus rubescens ; internal transcribed spacer 1 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053839 AF317077 Synechococcus sp. BO981502 ; internal transcribed spacer 1 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054469 AF317078 Synechococcus sp. BO983115 ; internal transcribed spacer 1 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054164 AF317079 Synechococcus sp. BO984127 ; internal transcribed spacer 1 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053283 AF330246 Synechococcus sp. BGS171 ; internal transcribed spacer 1 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054464 AF330247 Synechococcus sp. LBP1 ; internal transcribed spacer 1 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053495 AF330248 Synechococcus sp. LM94 ; internal transcribed spacer 1 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054601 AF330249 Synechococcus sp. LBG2 ; internal transcribed spacer 1 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053206 AF330250 Synechococcus sp. LBB3 ; internal transcribed spacer 1 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053650 AF330251 Synechococcus sp. BO0014 ; internal transcribed spacer 1 complete ; and tRNA-Ile and tRNA-Ala genes complete prokMSA_id:053000 AF330252 Synechococcus sp. BS4 ; internal transcribed spacer 1 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054577 AF330253 Synechococcus sp. BS5 ; internal transcribed spacer 1 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053471 AF330254 Synechococcus sp. BS20 ; internal transcribed spacer 1 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:046500 AF369648 Synechococcus sp. AB4192 prokMSA_id:079102 AF382117 clone ZA3242c prokMSA_id:079129 AF382121 clone ZA3421c prokMSA_id:079569 AF382128 clone ZA3803c prokMSA_id:079350 AF382136 clone ZA3703c prokMSA_id:079192 AF382140 clone ZA3833c prokMSA_id:070431 AF400152 Synechococcus sp. MLS1228cl3 prokMSA_id:062939 AF448060 Synechococcus sp. 1002 prokMSA_id:062937 AF448061 Synechococcus sp. T7cc1 prokMSA_id:062940 AF448062 Synechococcus sp. IR48 prokMSA_id:062935 AF448063 Synechococcus sp. UBR prokMSA_id:062934 AF448064 Synechococcus sp. HOS prokMSA_id:062933 AF448065 Synechococcus sp. NAN prokMSA_id:062932 AF448066 Synechococcus sp. TAG prokMSA_id:062931 AF448067 Synechococcus sp. TAGS prokMSA_id:062930 AF448068 Synechococcus sp. PS838 prokMSA_id:062929 AF448069 Synechococcus sp. PS840 prokMSA_id:062928 AF448070 Synechococcus sp. PS845 prokMSA_id:062927 AF448071 Synechococcus sp. PCC 8916 prokMSA_id:062926 AF448072 Synechococcus sp. PCC 8966 prokMSA_id:034475 AF469405 clone 33-FL95B99 prokMSA_id:059293 AF539812 Synechococcus sp. WH 8012 prokMSA_id:003328 AJ006282 str. watersample from Lake Loosdrecht. prokMSA_id:071463 AJ007639 cyanobacterium clone 25/4-1 prokMSA_id:024347 AJ007640 cyanobacterium clone 25/4-2 prokMSA_id:052111 AJ007643 cyanobacterium clone 25/5-3 prokMSA_id:028802 AJ133176 Synechococcus sp. strain GL150636 prokMSA_id:028869 AJ289785 Cyanobacterium 5X15 prokMSA_id:060158 AJ347056 clone TK09 prokMSA_id:060133 AJ347083 clone TK92 prokMSA_id:061772 AJ416162 clone Sta0-12 prokMSA_id:072502 AJ416164 clone Sta0-25 prokMSA_id:058392 AY033297 Synechococcus sp. MB11A04 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:068986 AY033307 Prochlorococcus sp. MB11E08 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:058393 AY033308 Synechococcus sp. MB11E09 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:068984 AY033310 Prochlorococcus sp. MB11F02 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:039055 AY038400 cyanobacterium clone CD3D10 prokMSA_id:023052 AY038458 cyanobacterium clone CD3E9 prokMSA_id:023332 AY038460 cyanobacterium clone CD2H4 prokMSA_id:065219 AY095538 cyanobacterium WR-1 prokMSA_id:065200 AY095559 cyanobacterium WR-25 prokMSA_id:065192 AY095569 cyanobacterium WR-39 prokMSA_id:065189 AY095570 cyanobacterium WR-40 prokMSA_id:055257 AY095677 cyanobacterium OR-102 prokMSA_id:065130 AY095682 cyanobacterium OR-108 prokMSA_id:065122 AY095690 cyanobacterium OR-126 prokMSA_id:065119 AY095692 cyanobacterium OR-130 prokMSA_id:065103 AY095711 cyanobacterium OR-226 prokMSA_id:065102 AY095713 cyanobacterium OR-228 prokMSA_id:065051 AY095770 cyanobacterium HI-20 prokMSA_id:064925 AY095854 cyanobacterium pT-116 prokMSA_id:064915 AY095863 cyanobacterium pT-134 prokMSA_id:055878 AY095864 cyanobacterium pT-201 prokMSA_id:064907 AY095876 cyanobacterium pT-403 prokMSA_id:064904 AY095877 cyanobacterium pT-404 prokMSA_id:064902 AY095878 cyanobacterium pT-405 prokMSA_id:064894 AY095888 cyanobacterium pT-430 prokMSA_id:064995 AY095915 cyanobacterium SH-303 prokMSA_id:064979 AY095930 cyanobacterium SH-335 prokMSA_id:081548 AY125355 Prochlorococcus sp. clone A314006 prokMSA_id:082276 AY125356 Prochlorococcus sp. clone A314010 prokMSA_id:082076 AY125357 Prochlorococcus sp. clone A314905 prokMSA_id:081940 AY125358 Prochlorococcus sp. clone A314907 prokMSA_id:081257 AY125359 Prochlorococcus sp. clone A314908 prokMSA_id:081379 AY125360 Synechococcus sp. clone A715001 prokMSA_id:082268 AY125361 Synechococcus sp. clone A715002 prokMSA_id:081449 AY125362 Synechococcus sp. clone A715003 prokMSA_id:081715 AY125363 Synechococcus sp. clone A715004 prokMSA_id:081631 AY125364 Synechococcus sp. clone A715005 prokMSA_id:081859 AY125365 Synechococcus sp. clone A715006 prokMSA_id:081048 AY125366 Synechococcus sp. clone A715009 prokMSA_id:082121 AY125367 Synechococcus sp. clone A715011 prokMSA_id:081872 AY125368 Synechococcus sp. clone A715012 prokMSA_id:081769 AY125369 Synechococcus sp. clone A715013 prokMSA_id:082220 AY125370 Synechococcus sp. clone A715014 prokMSA_id:081413 AY125371 Synechococcus sp. clone A715015 prokMSA_id:081277 AY125372 Synechococcus sp. clone A715016 prokMSA_id:081108 AY125373 Synechococcus sp. clone A315001 prokMSA_id:081828 AY125374 Synechococcus sp. clone A315002 prokMSA_id:081393 AY125375 Synechococcus sp. clone A315003 prokMSA_id:082146 AY125376 Synechococcus sp. clone A315004 prokMSA_id:081268 AY125377 Synechococcus sp. clone A315006 prokMSA_id:081563 AY125378 Synechococcus sp. clone A315007 prokMSA_id:082280 AY125379 Synechococcus sp. clone A315008 prokMSA_id:081898 AY125380 Synechococcus sp. clone A315010 prokMSA_id:082249 AY125381 Synechococcus sp. clone A315011 prokMSA_id:082376 AY125382 Synechococcus sp. clone A315020 prokMSA_id:081662 AY125383 Synechococcus sp. clone A315023 prokMSA_id:081556 AY125384 Synechococcus sp. clone A315024 prokMSA_id:081638 AY125385 Synechococcus sp. clone A315025 prokMSA_id:082398 AY125386 Synechococcus sp. clone A315026 prokMSA_id:091999 AY135672 clone ANT18/2_29 prokMSA_id:091478 AY135675 clone ANT18/2_60 prokMSA_id:069725 AY151232 Synechococcus sp. MW15-2 complete prokMSA_id:070279 AY151233 Synechococcus sp. MW25B5 complete prokMSA_id:069485 AY151234 Synechococcus sp. MW26A5 complete prokMSA_id:069200 AY151235 Synechococcus sp. MW28B3 complete prokMSA_id:072387 AY151236 Synechococcus sp. MW32B5 complete prokMSA_id:074342 AY151237 Synechococcus sp. MW33B4 complete prokMSA_id:072087 AY151238 Synechococcus sp. MW4C3 complete prokMSA_id:070666 AY151239 Synechococcus sp. MW6B4 complete prokMSA_id:069574 AY151240 Synechococcus sp. MW72C6 complete prokMSA_id:069544 AY151241 Synechococcus sp. MW73D5 complete prokMSA_id:069965 AY151242 Synechococcus sp. MW74D6 complete prokMSA_id:072834 AY151243 Synechococcus sp. MW6C6 complete prokMSA_id:074397 AY151244 Synechococcus sp. MW74D3 complete prokMSA_id:069531 AY151245 Synechococcus sp. MW76B2 complete prokMSA_id:070534 AY151246 Synechococcus sp. MW77D1 complete prokMSA_id:069548 AY151247 Synechococcus sp. MW99B6 complete prokMSA_id:071118 AY151248 Synechococcus sp. MW10#1 complete prokMSA_id:069638 AY151249 Synechococcus sp. MW101C3 complete prokMSA_id:071256 AY151250 Synechococcus sp. MW73B4 complete prokMSA_id:074359 AY151251 Synechococcus sp. MW97C4 complete prokMSA_id:085105 AY172800 Synechococcus sp. Almo3 prokMSA_id:082763 AY172801 Synechococcus sp. CC9311 prokMSA_id:084712 AY172802 Synechococcus sp. CC9605 prokMSA_id:085112 AY172803 Synechococcus sp. Dim prokMSA_id:085960 AY172804 Synechococcus sp. Eum14 prokMSA_id:085023 AY172805 Synechococcus sp. Max42 prokMSA_id:084700 AY172806 Synechococcus sp. Minos01-AC6F1 prokMSA_id:086476 AY172807 Synechococcus sp. Minos11 prokMSA_id:083121 AY172808 Synechococcus sp. Minos12 prokMSA_id:086201 AY172809 Synechococcus sp. Minos02-C2C2 prokMSA_id:084053 AY172810 Synechococcus sp. Oli31 prokMSA_id:085509 AY172811 Synechococcus sp. RS9901 prokMSA_id:083222 AY172812 Synechococcus sp. RS9902 prokMSA_id:086155 AY172813 Synechococcus sp. RS9903 prokMSA_id:083014 AY172814 Synechococcus sp. RS9904 prokMSA_id:083015 AY172815 Synechococcus sp. RS9905 prokMSA_id:086023 AY172816 Synechococcus sp. RS9906 prokMSA_id:083566 AY172817 Synechococcus sp. RS9907 prokMSA_id:086621 AY172818 Synechococcus sp. RS9908 prokMSA_id:084810 AY172819 Synechococcus sp. RS9909 prokMSA_id:083438 AY172820 Synechococcus sp. RS9910 prokMSA_id:085143 AY172821 Synechococcus sp. RS9911 prokMSA_id:085806 AY172822 Synechococcus sp. RS9912 prokMSA_id:085703 AY172823 Synechococcus sp. RS9913 prokMSA_id:085670 AY172824 Synechococcus sp. RS9914 prokMSA_id:085659 AY172825 Synechococcus sp. RS9915 prokMSA_id:085989 AY172826 Synechococcus sp. RS9916 prokMSA_id:082814 AY172827 Synechococcus sp. RS9917 prokMSA_id:083008 AY172828 Synechococcus sp. RS9918 prokMSA_id:084801 AY172829 Synechococcus sp. RS9919 prokMSA_id:085406 AY172830 Synechococcus sp. RS9920 prokMSA_id:085402 AY172831 Synechococcus sp. RS9921 prokMSA_id:082788 AY172832 Synechococcus sp. WH 5701 prokMSA_id:083422 AY172833 Synechococcus sp. WH 8002 prokMSA_id:083391 AY172834 Synechococcus sp. WH 8016 prokMSA_id:086649 AY172835 Synechococcus sp. WH 8020 prokMSA_id:085276 AY172836 Synechococcus sp. WH 8109 prokMSA_id:084144 AY172837 Cyanobium sp. Bright prokMSA_id:079250 AY183115 Cyanobium sp. LB03 prokMSA_id:079484 AY190170 Synechococcus sp. clone 50SA prokMSA_id:079165 AY190171 Synechococcus sp. clone 51SA prokMSA_id:079536 AY190172 Synechococcus sp. clone Hal1 prokMSA_id:079551 AY190173 Synechococcus sp. clone WS1 prokMSA_id:079470 AY190176 Synechococcus sp. clone 24N prokMSA_id:079329 AY190177 Synechococcus sp. clone M1 prokMSA_id:079582 AY190180 Synechococcus sp. clone 44It prokMSA_id:079266 AY190185 Synechococcus sp. clone 45Fr prokMSA_id:079414 AY190186 Synechococcus sp. clone 43Fr prokMSA_id:079456 AY190187 Synechococcus sp. clone 46Fr prokMSA_id:086982 AY210409 Synechococcus sp. C129 prokMSA_id:084475 AY223506 marine cyanobacterium clone pB-10 prokMSA_id:083400 AY224198 Synechococcus sp. MH305 prokMSA_id:083522 AY224199 Synechococcus sp. MH301 prokMSA_id:084148 AY224200 Synechococcus sp. MW74D3 prokMSA_id:084763 AY226045 marine cyanobacterium clone pB-13 prokMSA_id:091747 AY344431 clone K2-30-3 prokMSA_id:091791 AY344432 clone L2-50 prokMSA_id:092417 BX569694 Synechococcus sp. WH8102 complete genome; segment 6/7 prokMSA_id:092092 BX572090 Prochlorococcus marinus MED4 complete genome; segment 1/5 prokMSA_id:093066 BX572095 Prochlorococcus marinus MIT9313 complete genome; segment 1/7 prokMSA_id:093043 BX572100 Prochlorococcus marinus MIT9313 complete genome; segment 6/7 prokMSA_id:003340 D50614 Synechococcus sp. str. Biwa-B0. prokMSA_id:003341 D50615 Synechococcus sp. str. Biwa-G0. prokMSA_id:003342 D50616 Synechococcus sp. str. Biwa-P0. prokMSA_id:003333 D89036 Microcystis holsatica str. NIES43. prokMSA_id:003315 M63814 Sargasso Sea clone SAR 139. prokMSA_id:088136 NC_005042 Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome prokMSA_id:092221 NC_005070 Synechococcus sp. WH 8102 complete genome prokMSA_id:092726 NC_005071 Prochlorococcus marinus str. MIT 9313 complete genome prokMSA_id:092037 NC_005072 Prochlorococcus marinus subsp. pastoris str. CCMP1378 complete genome prokMSA_id:003350 X52169 Sargasso Sea clone SAR 6. prokMSA_id:003320 X52171 Sargasso Sea clone SAR 7. prokMSA_id:003310 X63140 Prochlorococcus marinus str. SSW5. 2.21.1.9.008 OTU 1 seq prokMSA_id:030150 AF172715 Pavlova gyrans small subunit ; chloroplast chloroplast product 2.21.1.9.009 OTU 1 seq prokMSA_id:031322 AF195453 Synechococcus kpj163f 2.21.1.9.010 OTU 1 seq prokMSA_id:031726 AJ390452 soil PBS-III-18 2.21.1.9.011 OTU 2 seqs prokMSA_id:040390 AJ390439 soil PBS-II-2 prokMSA_id:037044 AJ390454 soil PBS-III-24 2.21.1.9.012 OTU 1 seq prokMSA_id:065198 AY095561 cyanobacterium WR-29 2.21.1.9.999 poor quality 216 seqs prokMSA_id:017186 AB060937 cyanobacterium clone:B6 prokMSA_id:049260 AB060939 Synechococcus sp. OK09 prokMSA_id:028318 AB060941 Synechococcus sp. OK07 prokMSA_id:003336 AF001478 Synechococcus WH7805 str. WH7805. prokMSA_id:003337 AF001479 Synechococcus WH8103 str. WH8103. prokMSA_id:044520 AF058362 marine pM9-16 prokMSA_id:032210 AF058366 marine pM9-28 prokMSA_id:032778 AF107508 SY2-25 prokMSA_id:021332 AF114642 cyanobacterium SUR-FREE-33 prokMSA_id:021599 AF114663 cyanobacterium DCM-FREE-7 prokMSA_id:035760 AF114681 cyanobacterium DCM-FREE-7 prokMSA_id:003354 AF115271 Prochlorococcus MIT9215 str. MIT9215. prokMSA_id:020437 AF141564 cyanobacterium clone CRO-15 prokMSA_id:031744 AF141565 cyanobacterium clone CRO-16 prokMSA_id:030676 AF141571 cyanobacterium clone CRO-24 prokMSA_id:044623 AF141572 cyanobacterium clone CRO-27 prokMSA_id:051244 AF141574 cyanobacterium clone CRO-29 prokMSA_id:023603 AF141575 cyanobacterium clone CRO-31 prokMSA_id:034724 AF141578 cyanobacterium clone CRO-34 prokMSA_id:022039 AF141579 cyanobacterium clone CRO-35 prokMSA_id:044352 AF141591 cyanobacterium clone CRO-FL13 prokMSA_id:029863 AF141596 cyanobacterium clone CRO-FL18 prokMSA_id:021480 AF141599 cyanobacterium clone CRO-FL24 prokMSA_id:019255 AF186425 sponge symbiont PACN1 prokMSA_id:051022 AF186426 sponge symbiont PACN3 prokMSA_id:041148 AF195452 Synechococcus kpj425f prokMSA_id:018454 AF284790 Oscillatoriacean cyanobacterium prokMSA_id:036855 AF284806 Oscillatoriacean cyanobacterium MPI 98SCH.JHS prokMSA_id:067910 AF365868 clone BT60PA9BF3 prokMSA_id:064336 AF395812 Prochlorococcus sp. clone 12_1_2 prokMSA_id:064337 AF395813 Prochlorococcus sp. clone 12_1_4 prokMSA_id:053298 AF397673 Prochlorococcus marinus subsp. pastoris str. CCMP1378 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053694 AF397674 Prochlorococcus marinus subsp. pastoris str. MED4ax ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054492 AF397676 Prochlorococcus marinus str. RS810 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053822 AF397678 Prochlorococcus marinus str. GP2 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054370 AF397679 Prochlorococcus marinus str. MIT 9107 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053661 AF397681 Prochlorococcus marinus str. MIT 9123 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053270 AF397682 Prochlorococcus marinus str. MIT 9201 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054616 AF397683 Prochlorococcus marinus str. MIT 9202 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054578 AF397686 Prochlorococcus marinus str. MIT 9302 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053871 AF397687 Prochlorococcus marinus str. MIT 9311 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054208 AF397688 Prochlorococcus marinus str. MIT 9312 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:071334 AF397689 Prochlorococcus marinus str. MIT 9314 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054417 AF397692 Prochlorococcus marinus str. MIT 9401 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054739 AF397693 Prochlorococcus marinus str. SB ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054851 AF397696 Prochlorococcus marinus str. PAC1 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054893 AF397697 Prochlorococcus marinus str. LG ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053164 AF397698 Prochlorococcus marinus str. SS2 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:072701 AF397699 Prochlorococcus marinus str. SS35 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053658 AF397700 Prochlorococcus marinus str. SS51 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053820 AF397703 Prochlorococcus marinus str. MIT 9303 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054408 AF397704 Prochlorococcus marinus str. MIT 9313 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054179 AF397705 Synechococcus sp. MIT S9220 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054544 AF397719 Synechococcus sp. WH 8020 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:052989 AF397726 Synechococcus sp. RS9708 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054944 AF397729 Synechococcus sp. WH 5701 ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054988 AF397730 Cyanobium gracile ; internal transcribed spacer complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:046371 AF428687 clone CRP99-33 prokMSA_id:016960 AF428706 clone CRP99-52 prokMSA_id:031761 AF428724 clone CRP99-70 prokMSA_id:030258 AF428864 clone CR98-24-58 prokMSA_id:034642 AF428880 clone CR98-24-74 prokMSA_id:027195 AF429125 clone CR99-24-15 prokMSA_id:034370 AF429172 clone CR99-24-62 prokMSA_id:074318 AF497567 Aphanocapsa feldmani prokMSA_id:058074 AF547394 clone CL-S63-224 prokMSA_id:023177 AH005018 marine 5' prokMSA_id:052479 AH005020 marine 5' prokMSA_id:020870 AJ011150 3-27 clone 3-27 prokMSA_id:018288 AJ011155 4-33 clone 4-33 prokMSA_id:048994 AJ011165 4-9 clone 4-9 prokMSA_id:073600 AJ240008 cyanobacterium strain DGGE band VIBAC-3 prokMSA_id:043669 AJ240012 cyanobacterium strain DGGE band VICYA-1 prokMSA_id:037771 AJ295512 rape rhizosphere wr0061 prokMSA_id:037246 AJ295554 rape rhizosphere wr0117 prokMSA_id:069805 AJ298383 marine cyanobacterium AY-26 prokMSA_id:071754 AJ298384 marine cyanobacterium AY-29 prokMSA_id:072656 AJ311506 cyanobacterium Sau 5 prokMSA_id:066460 AJ314575 DGGE band 6 prokMSA_id:089260 AJ315783 clone 4 prokMSA_id:072128 AJ347088 clone TK59 prokMSA_id:061762 AJ416180 clone Sta1-02 prokMSA_id:061759 AJ416183 clone Sta1-07 prokMSA_id:061757 AJ416188 clone Sta1-28 prokMSA_id:061750 AJ416194 clone Sta1-43 prokMSA_id:061749 AJ416195 clone Sta1-44 prokMSA_id:061748 AJ416197 clone Sta1-46 prokMSA_id:072151 AJ416203 clone Sta2-09 prokMSA_id:061727 AJ416205 clone Sta2-11 prokMSA_id:056050 AJ416207 clone Sta2-16 prokMSA_id:056586 AJ416208 clone Sta2-19 prokMSA_id:061726 AJ416209 clone Sta2-23 prokMSA_id:061724 AJ416215 clone Sta2-47 prokMSA_id:061715 AJ416227 clone Sta3-24 prokMSA_id:061713 AJ416229 clone Sta3-27 prokMSA_id:061710 AJ416234 clone Sta4-07 prokMSA_id:061692 AJ416255 clone Sta5-07 prokMSA_id:056069 AJ416263 clone Sta5-19 prokMSA_id:061681 AJ416266 clone Sta5-23 prokMSA_id:061680 AJ416271 clone Sta5-34 prokMSA_id:061675 AJ416277 clone Sta6-02 prokMSA_id:061672 AJ416279 clone Sta6-08 prokMSA_id:019181 AJ422236 cyanobacterium isolate DGGE-7 prokMSA_id:057131 AJ518401 clone Neu4P1-94 prokMSA_id:056852 AJ518755 clone Sai4P3-91 prokMSA_id:081343 AJ550450 clone AS 10 prokMSA_id:081852 AJ550451 clone AS 42 prokMSA_id:082301 AJ550452 clone AS 61 prokMSA_id:081751 AJ550453 clone AS 43 prokMSA_id:081333 AJ550454 clone AS 22 prokMSA_id:033662 AY012535 Lake Michigan cyanobacterium LMC15-2 prokMSA_id:069884 AY012536 Lake Michigan cyanobacterium LMRTGG15-1 prokMSA_id:072936 AY012538 Lake Michigan cyanobacterium LMGG5-A prokMSA_id:024273 AY038381 cyanobacterium clone CD3B3 prokMSA_id:039579 AY038382 cyanobacterium clone CD3D4 prokMSA_id:049510 AY038383 cyanobacterium clone CD3C9 prokMSA_id:026301 AY038384 glaucocystophycean clone CD3B8 ; chloroplast chloroplast product prokMSA_id:017248 AY038385 cryptomonad clone CD3C7 ; chloroplast chloroplast product prokMSA_id:036162 AY038438 cyanobacterium clone CD3H5 prokMSA_id:037940 AY038439 cryptomonad clone CD3E8 ; chloroplast chloroplast product prokMSA_id:032317 AY038440 cyanobacterium clone CD3E4 prokMSA_id:052790 AY038441 cyanobacterium clone CD3G6 prokMSA_id:036472 AY038445 glaucocystophycean clone CD3H6 ; chloroplast chloroplast product prokMSA_id:038693 AY038448 cryptomonad clone CD3E3 ; chloroplast chloroplast product prokMSA_id:046533 AY038459 cyanobacterium clone CD3H9 prokMSA_id:050328 AY038461 cyanobacterium clone CD2E9 prokMSA_id:017846 AY038462 clone CD2E11 prokMSA_id:032458 AY038463 cyanobacterium clone CD2E7 prokMSA_id:032068 AY038489 cyanobacterium clone CD2G1 prokMSA_id:037908 AY038562 cyanobacterium clone CD2A5 prokMSA_id:016561 AY038563 clone CD2D2 prokMSA_id:048995 AY038564 cyanobacterium clone CD2A4 prokMSA_id:026331 AY038565 cyanobacterium clone CD2C3 prokMSA_id:044266 AY038566 cyanobacterium clone CD2C9 prokMSA_id:029395 AY038580 cyanobacterium clone CD2D9 prokMSA_id:055510 AY095539 cyanobacterium WR-2 prokMSA_id:065215 AY095542 cyanobacterium WR-5 prokMSA_id:065212 AY095543 cyanobacterium WR-7 prokMSA_id:065211 AY095544 cyanobacterium WR-9 prokMSA_id:065210 AY095545 cyanobacterium WR-10 prokMSA_id:065207 AY095549 cyanobacterium WR-14 prokMSA_id:065204 AY095553 cyanobacterium WR-18 prokMSA_id:065203 AY095554 cyanobacterium WR-19 prokMSA_id:065202 AY095556 cyanobacterium WR-21 prokMSA_id:065195 AY095563 cyanobacterium WR-31 prokMSA_id:065190 AY095568 cyanobacterium WR-37 prokMSA_id:065183 AY095575 cyanobacterium pV-2 prokMSA_id:065127 AY095681 cyanobacterium OR-107 prokMSA_id:065120 AY095689 cyanobacterium OR-125 prokMSA_id:065116 AY095696 cyanobacterium OR-204 prokMSA_id:065115 AY095698 cyanobacterium OR-207 prokMSA_id:055258 AY095699 cyanobacterium OR-208 prokMSA_id:065110 AY095702 cyanobacterium OR-214 prokMSA_id:065108 AY095706 cyanobacterium OR-218 prokMSA_id:065104 AY095708 cyanobacterium OR-221 prokMSA_id:065106 AY095709 cyanobacterium OR-222 prokMSA_id:065101 AY095710 cyanobacterium OR-223 prokMSA_id:065100 AY095714 cyanobacterium NL-2 prokMSA_id:065089 AY095728 cyanobacterium NL-120 prokMSA_id:065053 AY095766 cyanobacterium HI-13 prokMSA_id:064919 AY095855 cyanobacterium pT-120 prokMSA_id:064920 AY095858 cyanobacterium pT-125 prokMSA_id:064912 AY095867 cyanobacterium pT-207 prokMSA_id:064886 AY095895 cyanobacterium pT-438 prokMSA_id:065000 AY095908 cyanobacterium SH-204F prokMSA_id:055779 AY095909 cyanobacterium SH-204R prokMSA_id:064994 AY095912 cyanobacterium SH-223 prokMSA_id:064992 AY095913 cyanobacterium SH-301 prokMSA_id:064991 AY095914 cyanobacterium SH-302 prokMSA_id:064982 AY095921 cyanobacterium SH-314 prokMSA_id:064985 AY095925 cyanobacterium SH-321 prokMSA_id:055256 AY095928 cyanobacterium SH-325 prokMSA_id:056501 AY100494 cyanobacterium clone TA3122c_1_3 prokMSA_id:056595 AY100505 cyanobacterium clone TA3015b_1_5 prokMSA_id:075237 AY180094 marine cyanobacterium clone pB-21 prokMSA_id:082184 AY187468 clone SB130 prokMSA_id:079420 AY190175 Synechococcus sp. clone 1A prokMSA_id:079449 AY190178 Synechococcus sp. clone O1 prokMSA_id:079372 AY190179 Synechococcus sp. clone 42Q prokMSA_id:079131 AY190181 Synechococcus sp. clone 1E prokMSA_id:079270 AY190182 Synechococcus sp. clone 15Ab prokMSA_id:079599 AY190183 Synechococcus sp. clone 16Ex prokMSA_id:079554 AY190184 Synechococcus sp. clone 18D prokMSA_id:079425 AY190188 Synechococcus sp. clone 48Fr1 prokMSA_id:084100 AY226043 marine cyanobacterium clone pB-12F prokMSA_id:085902 AY226044 marine cyanobacterium clone pB-12R prokMSA_id:084824 AY226046 marine cyanobacterium clone pB-15F prokMSA_id:091163 AY258607 cyanobacterium DGGE Band 9 prokMSA_id:088153 AY320038 Cyanobacterium symbiont of Xestospongia muta clone CyXm_10 prokMSA_id:003379 L11937 Sargasso Sea 10m depth clone BDA1-12. prokMSA_id:003311 L11955 Pacific Ocean station 16 100m depth clone prokMSA_id:003309 L11971 Pacific Ocean station 25 100m depth clone prokMSA_id:003349 L11973 Pacific Ocean station 25 100m depth clone prokMSA_id:003319 L11975 Pacific Ocean station 25 100m depth clone prokMSA_id:003314 L11977 Pacific Ocean station 25 100m depth clone prokMSA_id:003378 L11978 Pacific Ocean station 29 100m depth clone prokMSA_id:003313 L11979 Pacific Ocean station 29 100m depth clone prokMSA_id:003318 L11981 Pacific Ocean station 29 100m depth clone prokMSA_id:003317 M63813 Sargasso Sea clone SAR 100. prokMSA_id:060020 U70718 prasinophyte clone OM111 prokMSA_id:023884 U84617 marine 5' prokMSA_id:045955 U84624 marine 3' prokMSA_id:003329 U84627 clone pB7-125R. prokMSA_id:003316 X52170 Sargasso Sea clone SAR 12. prokMSA_id:003312 X89338 clone 911. prokMSA_id:003321 Z77372 str. 1-140 C31. prokMSA_id:003322 Z77399 str. 1-420 C23. prokMSA_id:003323 Z77405 str. 1-420 C29. prokMSA_id:003324 Z77407 str. 1-420 C30. prokMSA_id:003325 Z77443 str. 1-700 C16. prokMSA_id:003326 Z77500 str. 2-100 C22. prokMSA_id:003327 Z77504 str. 2-100 C3. prokMSA_id:039087 Z77538 2-400 C2/2.12 prokMSA_id:028893 Z77615 2-100 C22 prokMSA_id:049217 Z77641 2-400 C2/2.12 prokMSA_id:024502 Z82779 Synechococcus sp. strain NIVA-CYA 328 2.21.2 CHLOROPLASTS_AND_CYANELLES 1069 seqs 2.21.2.1 PSEUDANABAENA_GROUP 170 seqs 2.21.2.1.001 OTU 23 seqs prokMSA_id:054033 AB039017 Pseudanabaena PCC6903 prokMSA_id:033610 AB039020 Pseudanabaena PCC7408 prokMSA_id:042848 AB042838 Phormidium tenue prokMSA_id:020111 AB042842 Phormidium tenue prokMSA_id:047367 AB042970 Phormidium tenue strain:S prokMSA_id:025499 AB042971 Phormidium tenue strain:A prokMSA_id:032638 AB042972 Phormidium tenue strain:C prokMSA_id:026809 AB042984 Phormidium tenue prokMSA_id:058469 AB045929 Limnothrix redekei strain: NIVA CYA 227/1 prokMSA_id:049081 AB047105 Phormidium tenue prokMSA_id:033385 AB060944 cyanobacterium OK03 prokMSA_id:003385 AF132787 "Pseudanabaena PCC7402" PCC 7402. prokMSA_id:054183 AF218370 Oscillatoria sp. UTCC393 prokMSA_id:049923 AF263339 Phormidium sp. E18 prokMSA_id:020903 AJ006279 cyanobacterium clone LD4 prokMSA_id:028335 AJ006280 cyanobacterium clone LD6 prokMSA_id:003387 AJ007908 "Oscillatoria limnetica" str. MR1. prokMSA_id:096040 AJ565866 Cyanobacterium sp. IW7 isolate IW7 prokMSA_id:097525 AJ565868 Cyanobacterium sp. IW11 isolate IW11 prokMSA_id:095634 AJ565870 Cyanobacterium sp. IW18 isolate IW18 prokMSA_id:095607 AJ580007 Limnothrix redekei CCAP 1443/1 ITS1 tRNA-Ile tRNA-Ala and 23S strain CCAP 1443/1 prokMSA_id:096216 AJ580008 Limnothrix sp. MR1 ITS1 tRNA-Ile tRNA-Ala and 23S isolate MR1 prokMSA_id:094467 AY151736 Antarctic cyanobacterium clone FrE313 complete 2.21.2.1.002 OTU 2 seqs prokMSA_id:003386 AB003165 Phormidium mucicola str. M-221. prokMSA_id:030337 AB039019 Pseudanabaena PCC7403 2.21.2.1.004 OTU 2 seqs prokMSA_id:028470 AB039018 Pseudanabaena PCC7367 prokMSA_id:003382 AF091108 Pseudoanabaena biceps PCC 7367. 2.21.2.1.005 OTU 3 seqs prokMSA_id:016700 AB039016 Pseudanabaena PCC6802 prokMSA_id:030772 AB060943 cyanobacterium OK02 prokMSA_id:038593 AB060945 cyanobacterium OK05 2.21.2.1.006 OTU 3 seqs prokMSA_id:031427 AF399864 cyanobacterium prokMSA_id:019816 AF399865 cyanobacterium prokMSA_id:087650 AY293417 cyanobacterium clone Lig060299-10.15 2.21.2.1.007 OTU 1 seq prokMSA_id:026455 AJ295559 rape rhizosphere wr0198 2.21.2.1.008 OTU 1 seq prokMSA_id:062918 AF448080 Synechococcus sp. PCC 7502 2.21.2.1.010 OTU 24 seqs prokMSA_id:003383 AF132774 Synechococcus ATCC700245 str. P1 ATCC 700245. prokMSA_id:003384 AF132775 Synechococcus ATCC700246 str. P2 ATCC 700246. prokMSA_id:070809 AF285240 Synechococcus sp. OH4 prokMSA_id:069841 AF285241 Synechococcus sp. OH20 prokMSA_id:070240 AF285242 Synechococcus sp. OH31 prokMSA_id:070422 AF285243 Synechococcus sp. OH32 prokMSA_id:071306 AF285254 Synechococcus sp. OH28 prokMSA_id:072458 AF285255 Synechococcus sp. OH29 prokMSA_id:071080 AF285256 Synechococcus sp. OH30 prokMSA_id:073271 AF285257 Synechococcus sp. OH33 prokMSA_id:071581 AF285258 Synechococcus sp. OH34 prokMSA_id:071587 AF285259 Synechococcus sp. OH2 prokMSA_id:037551 AF445693 cyanobacterium clone SM1F11 prokMSA_id:042778 AF445722 cyanobacterium clone SM2D09 prokMSA_id:037492 AF446242 cyanobacterium Lig060299-6.10 prokMSA_id:050684 AF446243 cyanobacterium Lig060299-9.13 prokMSA_id:081599 AF505960 Synechococcus sp. 37 NACy05-A prokMSA_id:082458 AF505961 cyanobacterium NACy05-A prokMSA_id:082209 AF505962 cyanobacterium NACy05-A prokMSA_id:078933 AY189625 clone EarCan098 prokMSA_id:080046 AY193113 cyanobacterium clone QL2B3 prokMSA_id:079841 AY193115 candidate division OP10 clone QL2B5 prokMSA_id:087354 AY293403 cyanobacterium clone SM2A08 prokMSA_id:087052 AY293511 cyanobacterium clone FL12G09 2.21.2.1.011 OTU 1 seq prokMSA_id:086800 AY293418 cyanobacterium clone Lig060299-10.16 2.21.2.1.012 OTU 1 seq prokMSA_id:094666 AJ583205 clone S15D-MN45 2.21.2.1.013 OTU 1 seq prokMSA_id:095130 AY151725 Antarctic cyanobacterium clone Fr032 complete 2.21.2.1.999 poor quality 108 seqs prokMSA_id:029324 AF399857 cyanobacterium prokMSA_id:031741 AF399858 cyanobacterium prokMSA_id:039952 AF399859 cyanobacterium prokMSA_id:033182 AF446266 cyanobacterium FL06H08 prokMSA_id:081908 AF505919 cyanobacterium NACy01 prokMSA_id:081044 AF505920 cyanobacterium NACy02 prokMSA_id:082375 AF505921 cyanobacterium NACy03 prokMSA_id:082422 AF505922 cyanobacterium NACy04 prokMSA_id:082397 AF505923 cyanobacterium NACy04 prokMSA_id:081609 AF505925 cyanobacterium NACy07 prokMSA_id:082348 AF505926 cyanobacterium NACy08 prokMSA_id:081708 AF505927 cyanobacterium NACy09 prokMSA_id:081444 AF505928 cyanobacterium NACy09 prokMSA_id:081353 AF505929 cyanobacterium NACy10 prokMSA_id:081117 AF505930 cyanobacterium NACy10 prokMSA_id:081352 AF505931 cyanobacterium NACy10 prokMSA_id:082315 AF505932 cyanobacterium NACy10 prokMSA_id:081565 AF505933 cyanobacterium NACy10 prokMSA_id:082236 AF505934 cyanobacterium NACy10 prokMSA_id:081867 AF505935 cyanobacterium NACy10 prokMSA_id:081129 AF505936 cyanobacterium NACy10 prokMSA_id:082084 AF505937 cyanobacterium NACy10 prokMSA_id:081757 AF505938 cyanobacterium NACy10 prokMSA_id:081304 AF505939 cyanobacterium NACy11 prokMSA_id:081181 AF505940 cyanobacterium NACy11 prokMSA_id:082448 AF505941 cyanobacterium NACy11 prokMSA_id:083227 AF550093 cyanobacterium clone 601 and -23S internal transcribed spacer region prokMSA_id:085593 AF550094 cyanobacterium clone 602 and -23S internal transcribed spacer region prokMSA_id:084934 AF550095 cyanobacterium clone 603 and -23S internal transcribed spacer region prokMSA_id:084369 AF550097 cyanobacterium clone 605 and -23S internal transcribed spacer region prokMSA_id:084836 AF550098 cyanobacterium clone 606 and -23S internal transcribed spacer region prokMSA_id:083031 AF550099 cyanobacterium clone 607 and -23S internal transcribed spacer region prokMSA_id:083290 AF550100 cyanobacterium clone 608 and -23S internal transcribed spacer region prokMSA_id:085837 AF550101 cyanobacterium clone 609 and -23S internal transcribed spacer region prokMSA_id:083074 AF550102 cyanobacterium clone 610 and -23S internal transcribed spacer region prokMSA_id:083833 AF550103 cyanobacterium clone 611 and -23S internal transcribed spacer region prokMSA_id:085192 AF550104 cyanobacterium clone 612 and -23S internal transcribed spacer region prokMSA_id:082661 AF550105 cyanobacterium clone 613 and -23S internal transcribed spacer region prokMSA_id:085919 AF550106 cyanobacterium clone 614 and -23S internal transcribed spacer region prokMSA_id:083440 AF550107 cyanobacterium clone 615 and -23S internal transcribed spacer region prokMSA_id:086516 AF550108 cyanobacterium clone 616 and -23S internal transcribed spacer region prokMSA_id:084518 AF550109 cyanobacterium clone 618 and -23S internal transcribed spacer region prokMSA_id:086392 AF550110 cyanobacterium clone 620 and -23S internal transcribed spacer region prokMSA_id:084283 AF550111 cyanobacterium clone 701 and -23S internal transcribed spacer region prokMSA_id:086060 AF550112 cyanobacterium clone 702 and -23S internal transcribed spacer region prokMSA_id:085606 AF550113 cyanobacterium clone 703 and -23S internal transcribed spacer region prokMSA_id:084527 AF550114 cyanobacterium clone 704 and -23S internal transcribed spacer region prokMSA_id:085343 AF550115 cyanobacterium clone 705 and -23S internal transcribed spacer region prokMSA_id:083824 AF550116 cyanobacterium clone 706 and -23S internal transcribed spacer region prokMSA_id:086532 AF550117 cyanobacterium clone 707 and -23S internal transcribed spacer region prokMSA_id:082954 AF550118 cyanobacterium clone 708 and -23S internal transcribed spacer region prokMSA_id:086121 AF550119 cyanobacterium clone 710 and -23S internal transcribed spacer region prokMSA_id:085682 AF550120 cyanobacterium clone 711 and -23S internal transcribed spacer region prokMSA_id:084031 AF550121 cyanobacterium clone 712 and -23S internal transcribed spacer region prokMSA_id:086575 AF550122 cyanobacterium clone 714 and -23S internal transcribed spacer region prokMSA_id:086552 AF550123 cyanobacterium clone 715 and -23S internal transcribed spacer region prokMSA_id:086662 AF550124 cyanobacterium clone 717 and -23S internal transcribed spacer region prokMSA_id:083020 AF550125 cyanobacterium clone 718 and -23S internal transcribed spacer region prokMSA_id:084811 AF550126 cyanobacterium clone 719 and -23S internal transcribed spacer region prokMSA_id:084181 AF550127 cyanobacterium clone 720 and -23S internal transcribed spacer region prokMSA_id:073707 AJ240003 cyanobacterium strain DGGE band CICYA-2 prokMSA_id:050267 AJ422238 cyanobacterium isolate CYA-5 prokMSA_id:098131 AJ565865 cyanobacterium sp. IW5 isolate IW5 prokMSA_id:096115 AJ565867 cyanobacterium sp. IW10 isolate IW10 prokMSA_id:096332 AJ565869 cyanobacterium IW14 isolate IW14 prokMSA_id:097458 AJ565871 cyanobacterium sp. IW21 isolate IW21 prokMSA_id:097745 AJ585513 Limnothrix sp. IW3 isolate IW3 prokMSA_id:030903 AY012537 Lake Michigan cyanobacterium LMC25-4 prokMSA_id:020380 AY012539 Lake Michigan cyanobacterium LMC25-8 prokMSA_id:060856 AY135917 clone SG2-106 prokMSA_id:072524 AY145685 cyanobacterium TS4E06 prokMSA_id:094625 AY151760 Antarctic cyanobacterium clone Fr288 prokMSA_id:095157 AY151769 Antarctic cyanobacterium isolate DGGE gel band FrF4 prokMSA_id:079857 AY193053 cyanobacterium clone O1aA41 prokMSA_id:080583 AY193054 cyanobacterium clone O1aA80 prokMSA_id:080604 AY193058 cyanobacterium clone O1aA1 prokMSA_id:080191 AY193060 cyanobacterium clone O1aA23 prokMSA_id:080969 AY193062 cyanobacterium clone O1aA3 prokMSA_id:079633 AY193063 cyanobacterium clone O1aA4 prokMSA_id:080319 AY193064 cyanobacterium clone O1aA6 prokMSA_id:080151 AY193065 cyanobacterium clone O1aA9 prokMSA_id:081006 AY193066 cyanobacterium clone O1aA95 prokMSA_id:080082 AY193067 cyanobacterium clone O1aA96 prokMSA_id:079658 AY193095 cyanobacterium clone QL2A1 prokMSA_id:080974 AY193111 cyanobacterium clone QL2B1 prokMSA_id:081027 AY193290 cyanobacterium clone O1aB2 prokMSA_id:086884 AY293437 cyanobacterium clone FL02F02 prokMSA_id:087154 AY293440 cyanobacterium clone FL03A01 prokMSA_id:086853 AY293521 cyanobacterium clone FL13C11 prokMSA_id:087458 AY293523 cyanobacterium clone FL13D09 prokMSA_id:086954 AY293524 cyanobacterium clone FL13D10 prokMSA_id:088037 AY293527 cyanobacterium clone FL13E07 prokMSA_id:086902 AY293529 cyanobacterium clone FL13E09 prokMSA_id:087658 AY293530 cyanobacterium clone FL13E12 prokMSA_id:086720 AY293537 cyanobacterium clone FL14A10 prokMSA_id:087672 AY293538 phototrophic eukaryote clone FL14B07 ; chloroplast chloroplast product prokMSA_id:087351 AY293545 phototrophic eukaryote clone FL14D06 ; chloroplast chloroplast product prokMSA_id:087332 AY293554 phototrophic eukaryote clone FL14F06 ; chloroplast chloroplast product prokMSA_id:093146 AY354460 cyanobacterium isolate DGGE gel band M1A prokMSA_id:092596 AY354461 cyanobacterium isolate DGGE gel band M2A prokMSA_id:092750 AY354462 cyanobacterium isolate DGGE gel band M3A prokMSA_id:092091 AY354463 cyanobacterium isolate DGGE gel band M4A prokMSA_id:092654 AY354466 cyanobacterium isolate DGGE gel band R3A prokMSA_id:092950 AY354467 cyanobacterium isolate DGGE gel band R4A prokMSA_id:003380 NONE "Pseudanabaena galeata" str. CCC OL-75-PS. prokMSA_id:003381 NONE "Pseudanabaena" sp. PCC 6903. prokMSA_id:073893 X52545 Unknown Octopus Spring OS B prokMSA_id:017729 Z82778 P.limnetica strain NIVA-CYA 276/6 2.21.2.2 CYANELLE_GROUP 18 seqs 2.21.2.2.001 OTU 1 seq prokMSA_id:003393 X82495 Gloeochaete wittrockiana str. SAG B 46.84 blue green alga -- 2.21.2.2.002 OTU 1 seq prokMSA_id:003392 X82496 Glaucocystis nostochinearum str. SAG 45.88 blue green alga -- 2.21.2.2.003 OTU 1 seq prokMSA_id:003391 X81840 Cyanophora paradoxa str. SAG B 45.85 colorless flagellate alga -- 2.21.2.2.004 OTU 4 seqs prokMSA_id:053530 NC_001675 Cyanophora paradoxa cyanelle complete genome prokMSA_id:003389 NONE Cyanophora paradoxa colorless flagellate alga -- cyanelle. prokMSA_id:003390 U30821 Cyanophora paradoxa colorless flagellate alga -- cyanelle. prokMSA_id:003388 U30821 Cyanophora paradoxa colorless flagellate alga -- cyanelle. 2.21.2.2.005 OTU 1 seq prokMSA_id:030917 AF289160 clone PRD01a012B 2.21.2.2.006 OTU 2 seqs prokMSA_id:082732 AB002583 Cyanidioschyzon merolae chloroplast complete genome strain:10D prokMSA_id:086646 NC_004799 Cyanidioschyzon merolae chloroplast complete genome 2.21.2.2.007 OTU 2 seqs prokMSA_id:088241 AY328718 DSSD19 prokMSA_id:088062 AY328722 DSSD23 2.21.2.2.008 OTU 1 seq prokMSA_id:094386 AB120831 clone:MC82A09 2.21.2.2.999 poor quality 5 seqs prokMSA_id:067770 AF423349 cyanobacterium isolate DGGE band Lb prokMSA_id:037535 AF441947 eukaryote clone CD12C8 ; chloroplast chloroplast product prokMSA_id:069458 AF544871 cyanobacterium clone D1-5 prokMSA_id:073272 AF544885 cyanobacterium clone D1-56 prokMSA_id:003394 Z77446 str. 1-700 C2. 2.21.2.3 OTHER_CHLOROPLASTS 507 seqs 2.21.2.3.1 SKELETONEMA_SUBGROUP 308 seqs 2.21.2.3.1.001 OTU 1 seq prokMSA_id:003448 X14873 Pylaiella littoralis brown alga -- chloroplast. 2.21.2.3.1.002 OTU 1 seq prokMSA_id:003447 M82860 Olisthodiscus luteus stramenopile -- chloroplast. 2.21.2.3.1.006 OTU 3 seqs prokMSA_id:003397 U32667 clone OM13. prokMSA_id:003395 U32668 clone OM19. prokMSA_id:003396 U32669 clone OM22. 2.21.2.3.1.010 OTU 1 seq prokMSA_id:021920 AF142971 Diatom TAYNAYA-23 2.21.2.3.1.013 OTU 1 seq prokMSA_id:030128 U70721 eukaryote OM164 2.21.2.3.1.017 OTU 1 seq prokMSA_id:046959 AF369649 Diatom plastid AB4314 2.21.2.3.1.018 OTU 53 seqs prokMSA_id:026337 AF142905 Diatom ORGANIC-3 prokMSA_id:041057 AF142970 Diatom TAYNAYA-22 prokMSA_id:030270 AF146241 stramenopile CLEAR-18 prokMSA_id:003440 AF159634 clone HstpL29. prokMSA_id:003441 AF159635 clone HstpL32. prokMSA_id:003442 AF159636 clone HstpL35. prokMSA_id:003443 AF159637 clone HstpL96. prokMSA_id:020922 AF277476 Diatom sp. SIC.42333 prokMSA_id:052915 AF277518 Diatom sp. SIC.928 prokMSA_id:024154 AF277540 Diatom sp. ARCTIC.149 prokMSA_id:022852 AF277553 Diatom sp. McMurdo.54 prokMSA_id:028616 AF316691 Crater Lake CL120-63 prokMSA_id:038733 AF327029 bacillariophyte clone AWS98-19b ; chloroplast chloroplast product prokMSA_id:029577 AF327030 bacillariophyte clone AWS98-11b ; chloroplast chloroplast product prokMSA_id:041485 AF327032 bacillariophyte clone AWS98-2c ; chloroplast chloroplast product prokMSA_id:017917 AF369650 Diatom plastid AB4315 prokMSA_id:030625 AF418971 diatom clone HT2A3 ; chloroplast chloroplast product prokMSA_id:042337 AF418972 diatom clone HTB2 ; chloroplast chloroplast product prokMSA_id:048163 AF418973 diatom clone HT2A8 ; chloroplast chloroplast product prokMSA_id:044942 AF418974 diatom clone HT2B7 ; chloroplast chloroplast product prokMSA_id:026067 AF418975 diatom clone HT2F1 ; chloroplast chloroplast product prokMSA_id:030482 AF418976 diatom clone HTAA8 ; chloroplast chloroplast product prokMSA_id:018056 AF418977 diatom clone HTDD6 ; chloroplast chloroplast product prokMSA_id:063815 AF454328 plastid clone ML310M-8 prokMSA_id:064747 AF514847 Gyrosigma fasciola ; chloroplast chloroplast product prokMSA_id:064746 AF514848 Pleurosigma intermedium ; chloroplast chloroplast product prokMSA_id:064745 AF514851 Haslea sp. ; chloroplast chloroplast product prokMSA_id:064743 AF514852 Haslea ostrearia ; chloroplast chloroplast product prokMSA_id:064739 AF514853 Haslea pseudostrearia ; chloroplast chloroplast product prokMSA_id:064737 AF514855 Haslea wawrikae ; chloroplast chloroplast product prokMSA_id:063316 AF523902 clone RCP2-13 prokMSA_id:003438 AJ007876 clone LD27. prokMSA_id:070579 AJ427423 algae chloroplast clone Sta0-03 prokMSA_id:095798 AJ538357 clone 53 prokMSA_id:022357 AY038449 Coscinodiscophyceae clone CD3F3 ; chloroplast chloroplast product prokMSA_id:049085 AY038472 clone CD2E6 prokMSA_id:091725 AY135676 phototrophic eukaryote clone ANT18/2_56 ; plastid plastid product prokMSA_id:091882 AY135680 phototrophic eukaryote clone ANT18/2_52 ; plastid plastid product prokMSA_id:091040 AY135681 phototrophic eukaryote clone ANT18/2_65 ; plastid plastid product prokMSA_id:056578 AY135907 clone SG2-54 prokMSA_id:060858 AY135916 clone SG2-98 prokMSA_id:074946 AY168726 diatom clone HC-42P ; chloroplast chloroplast product prokMSA_id:077079 AY168751 diatom clone HC-8 ; chloroplast chloroplast product prokMSA_id:081442 AY193915 clone SB3 prokMSA_id:003401 L10940 marine snow associated clone agg46. prokMSA_id:003402 L10941 marine snow associated clone agg56. prokMSA_id:048825 NC_001713 Odontella sinensis chloroplast complete genome prokMSA_id:003400 U32670 clone OM20. prokMSA_id:003445 U41089 clone HstpL1. prokMSA_id:003446 U41090 clone HstpL4. prokMSA_id:003439 X82154 Skeletonema costatum str. UBS-18 Univ. of British Columbia centric prokMSA_id:003403 X82155 Skeletonema pseudocostatum str. CSIRO culture CS-76 centric prokMSA_id:069021 Z67753 Odontella sinensis complete chloroplast genome 2.21.2.3.1.019 OTU 1 seq prokMSA_id:064424 AY102899 clone BCM3P-3B 2.21.2.3.1.020 OTU 1 seq prokMSA_id:066548 AY100532 clone cvf74026 2.21.2.3.1.021 OTU 1 seq prokMSA_id:081490 AY187461 eukaryote clone SB113 ; plastid plastid product 2.21.2.3.1.022 OTU 1 seq prokMSA_id:091252 AY135683 phototrophic eukaryote clone ANT18/2_84 ; plastid plastid product 2.21.2.3.1.024 OTU 4 seqs prokMSA_id:068870 AF328216 stramenopile clone KS82 prokMSA_id:091817 AY135678 phototrophic eukaryote clone ANT18/2_32 ; plastid plastid product prokMSA_id:091956 AY135679 phototrophic eukaryote clone ANT18/2_41 ; plastid plastid product prokMSA_id:091980 AY135682 phototrophic eukaryote clone ANT18/2_82 ; plastid plastid product 2.21.2.3.1.999 poor quality 239 seqs prokMSA_id:069716 AF010022 prokMSA_id:029682 AF141412 eukaryote clone CR-PA2 ; chloroplast chloroplast product prokMSA_id:048266 AF141419 eukaryote clone CR-PA20 ; chloroplast chloroplast product prokMSA_id:028085 AF141425 eukaryote clone CR-PA30 ; chloroplast chloroplast product prokMSA_id:039521 AF141429 eukaryote clone CR-PA43 ; chloroplast chloroplast product prokMSA_id:050588 AF141470 eukaryote ; chloroplast chloroplast product prokMSA_id:047289 AF141523 eukaryote clone CRE-PA42 ; chloroplast chloroplast product prokMSA_id:043598 AF141533 eukaryote clone CRE-PA59 ; chloroplast chloroplast product prokMSA_id:032073 AF141534 eukaryote clone CRE-PA60 ; chloroplast chloroplast product prokMSA_id:047445 AF175611 WJGRT-67 prokMSA_id:026816 AF177567 marine D042 prokMSA_id:026379 AF208991 vent ML-2a prokMSA_id:050749 AF208992 vent ML-2b prokMSA_id:070835 AF208993 vent ML-2c prokMSA_id:025085 AF208994 vent ML-2d prokMSA_id:026780 AF208995 vent ML-2e prokMSA_id:017125 AF211293 Cytophagales CE60 prokMSA_id:043362 AF266663 diatom prokMSA_id:025628 AF268287 phytoplankton ESR 3 prokMSA_id:042334 AF277498 Diatom sp. SIC.8113 prokMSA_id:043782 AF277507 Diatom sp. SIC.813 prokMSA_id:018961 AF277529 Diatom sp. SIC.103602 prokMSA_id:049100 AF316681 Crater Lake CL0-4 prokMSA_id:034256 AF316682 Crater Lake CL0-6 prokMSA_id:032969 AF316683 Crater Lake CL0-15 prokMSA_id:047811 AF316684 Crater Lake CL0-23 prokMSA_id:051189 AF316685 Crater Lake CL0-38 prokMSA_id:048173 AF316686 Crater Lake CL0-45 prokMSA_id:020747 AF316687 Crater Lake CL0-78 prokMSA_id:028432 AF316688 Crater Lake CL0-86 prokMSA_id:040307 AF316689 Crater Lake CL0-91 prokMSA_id:047502 AF316690 Crater Lake CL0-109 prokMSA_id:022728 AF316692 Crater Lake CL500-34 prokMSA_id:041690 AF316693 Crater Lake CL500-55 prokMSA_id:019557 AF316694 Crater Lake CL500-65 prokMSA_id:050026 AF316695 Crater Lake CL500-68 prokMSA_id:022908 AF316696 Crater Lake CL500-87 prokMSA_id:038654 AF316697 Crater Lake CL500-92 prokMSA_id:036973 AF316713 Crater Lake CL0-95 prokMSA_id:050743 AF327031 bacillariophyte clone AWS98-11c ; chloroplast chloroplast product prokMSA_id:068274 AF365442 clone BM89MF1BA4 prokMSA_id:056197 AF365450 clone BM89MF1BB12 prokMSA_id:068264 AF365453 clone BM89MF1BB8 prokMSA_id:068252 AF365467 clone BM89MF1BD9 prokMSA_id:068244 AF365476 clone BM89MF1BF4 prokMSA_id:068207 AF365518 clone BM89MF5BE8 prokMSA_id:068196 AF365530 clone BM89MF5BG9b prokMSA_id:068161 AF365571 clone BT49MF4BE2 prokMSA_id:068159 AF365573 clone BT49MF4BG2 prokMSA_id:068157 AF365575 clone BT49MF4BG8 prokMSA_id:068150 AF365581 clone BT60MF2BA2 prokMSA_id:068141 AF365593 clone BT60MF2BD12 prokMSA_id:055545 AF365595 clone BT60MF2BG6 prokMSA_id:067985 AF365779 clone BM89PA1BbA2 prokMSA_id:067956 AF365815 clone BT60PA10BA8 prokMSA_id:067942 AF365832 clone BT60PA10BD11 prokMSA_id:048116 AF392790 clone CBF2 prokMSA_id:041707 AF393620 diatom plastid prokMSA_id:054003 AF428903 clone CR98-35-21 prokMSA_id:022636 AF432283 eukaryote FO-6d-103 ; chloroplast chloroplast product prokMSA_id:057728 AF432284 eukaryote FO-6d-98 ; chloroplast chloroplast product prokMSA_id:057727 AF432304 eukaryote 0%N-0d-51 ; chloroplast chloroplast product prokMSA_id:017562 AF432325 eukaryote 4%N-0d-39 ; chloroplast chloroplast product prokMSA_id:023472 AF432336 eukaryote 4%N-6d-94 ; chloroplast chloroplast product prokMSA_id:042598 AF441883 clone CD13H10 prokMSA_id:017168 AF441999 clone CD12E2 prokMSA_id:028541 AF442020 clone CD12H4 prokMSA_id:038342 AF446271 eukaryote FL14G12 ; chloroplast chloroplast product prokMSA_id:063811 AF454322 plastid clone ML310M-15 prokMSA_id:063801 AF454336 plastid clone ML512M-10 prokMSA_id:056699 AF477838 prokaryote isolate DGGE Band 18-UIB 11% pond prokMSA_id:064172 AF477839 prokaryote isolate DGGE Band 21-UIB 11% pond prokMSA_id:060777 AF491679 diatom clone SFD1-22 ; chloroplast chloroplast product prokMSA_id:067567 AF495756 Nonionella stella isolate Nschl1a ; chloroplast chloroplast product prokMSA_id:067565 AF495757 Nonionella stella isolate Nschl2a ; chloroplast chloroplast product prokMSA_id:066420 AF497898 alga isolate WL11-18 ; chloroplast chloroplast product prokMSA_id:066418 AF497901 alga isolate WL8-6 ; chloroplast chloroplast product prokMSA_id:066417 AF497902 alga isolate WL5-1 ; chloroplast chloroplast product prokMSA_id:069917 AF497903 alga isolate WB8-13 ; chloroplast chloroplast product prokMSA_id:067087 AF499372 clone JCL9-103 prokMSA_id:067045 AF499429 clone BL-119 prokMSA_id:055389 AF499430 clone BL-57 prokMSA_id:061163 AF530096 isolate MGP DGGE Band 5/6A prokMSA_id:071404 AF544933 phototrophic eukaryote clone 1-7-7 ; chloroplast chloroplast product prokMSA_id:058069 AF547397 clone CL-S63-227 prokMSA_id:028212 AJ248289 diatom plastid clone P2.2 prokMSA_id:071966 AJ248290 diatom plastid clone P2.3 prokMSA_id:071760 AJ248291 diatom plastid clone P2.4 prokMSA_id:046294 AJ248299 diatom plastid clone P4.1 prokMSA_id:029361 AJ248301 diatom plastid clone P4.4 prokMSA_id:074079 AJ248302 diatom plastid clone P4.6 prokMSA_id:035420 AJ248307 diatom plastid clone P5.2 prokMSA_id:070070 AJ248310 diatom plastid clone P6.1 prokMSA_id:072677 AJ248311 diatom plastid clone P6.2 prokMSA_id:070333 AJ298386 marine algae BY-8 prokMSA_id:072947 AJ319823 Coscinodiscus sp. chloroplast prokMSA_id:059258 AJ319824 Leptocylindrus danicus chloroplast strain CCMP469 prokMSA_id:059257 AJ319825 Chaetoceros socialis chloroplast prokMSA_id:059254 AJ319826 Ditylum brightwellii chloroplast strain CCMP358 prokMSA_id:059253 AJ319827 Thalassiosira weissflogii chloroplast strain CCMP1049 prokMSA_id:059256 AJ319828 Asterionella glacialis chloroplast strain Oldenburg prokMSA_id:061655 AJ427440 algae chloroplast clone Sta4-10 prokMSA_id:061656 AJ427441 algae chloroplast clone Sta4-23 prokMSA_id:021674 AJ431353 isolate ikaite un-c4 prokMSA_id:057311 AJ518133 clone Mul01-68 prokMSA_id:072315 AJ518335 clone Neu2P1-82 prokMSA_id:057178 AJ518343 clone Neu2P2-84 prokMSA_id:072614 AJ518344 clone Neu2P2-92 prokMSA_id:073665 AJ518347 clone Neu2P3-20 prokMSA_id:069944 AJ518348 clone Neu2P3-24 prokMSA_id:057163 AJ518360 clone Neu4P1-17 prokMSA_id:057160 AJ518364 clone Neu4P1-26 prokMSA_id:057150 AJ518375 clone Neu4P1-50 prokMSA_id:057152 AJ518377 clone Neu4P1-53 prokMSA_id:057143 AJ518387 clone Neu4P1-68 prokMSA_id:057139 AJ518392 clone Neu4P1-79 prokMSA_id:057136 AJ518394 clone Neu4P1-82 prokMSA_id:057135 AJ518398 clone Neu4P1-91 prokMSA_id:057132 AJ518400 clone Neu4P1-93 prokMSA_id:057120 AJ518416 clone Neu4P3-17 prokMSA_id:057110 AJ518422 clone Neu4P3-23 prokMSA_id:057100 AJ518436 clone Neu4P3-48 prokMSA_id:057088 AJ518452 clone Neu4P3-67 prokMSA_id:057085 AJ518456 clone Neu4P3-70 prokMSA_id:057084 AJ518457 clone Neu4P3-72 prokMSA_id:057072 AJ518473 clone Qui2P1-12 prokMSA_id:057053 AJ518495 clone Qui2P1-97 prokMSA_id:057038 AJ518509 clone Qui2P2-49 prokMSA_id:057029 AJ518529 clone Qui2P3-48 prokMSA_id:073979 AJ518533 clone Qui2P3-61 prokMSA_id:070023 AJ518534 clone Qui2P3-62 prokMSA_id:055632 AJ518608 clone Qui4P2-80 prokMSA_id:056954 AJ518623 clone Sai1P1-28 prokMSA_id:056949 AJ518626 clone Sai1P1-37 prokMSA_id:056952 AJ518629 clone Sai1P1-48 prokMSA_id:056119 AJ518639 clone Sai1P1-86 prokMSA_id:056940 AJ518653 clone Sai2P2-21 prokMSA_id:056941 AJ518654 clone Sai2P2-22 prokMSA_id:074098 AJ518663 clone Sai2P2-49 prokMSA_id:056927 AJ518665 clone Sai2P2-58 prokMSA_id:056925 AJ518667 clone Sai2P2-63 prokMSA_id:055436 AJ518689 clone Sai4P1-70 prokMSA_id:056904 AJ518691 clone Sai4P1-73 prokMSA_id:056897 AJ518700 clone Sai4P1-84 prokMSA_id:056894 AJ518702 clone Sai4P1-89 prokMSA_id:056179 AJ518705 clone Sai4P1-91 prokMSA_id:056888 AJ518708 clone Sai4P3-18 prokMSA_id:056885 AJ518716 clone Sai4P3-31 prokMSA_id:056878 AJ518719 clone Sai4P3-36 prokMSA_id:056845 AJ518806 clone Sai1P1-41 prokMSA_id:023615 AY038427 diatom clone CD5B7 ; chloroplast chloroplast product prokMSA_id:060909 AY100324 diatom isolate DGGE band a prokMSA_id:069651 AY100483 cyanobacterium clone TA3015c_1 prokMSA_id:063188 AY117757 isolate DGGE band L-8 prokMSA_id:063187 AY117759 isolate DGGE band S-2 prokMSA_id:056101 AY117760 isolate DGGE band S-9 prokMSA_id:063183 AY117768 isolate DGGE band A-11 prokMSA_id:094202 AY145870 isolate DGGE band RWA21 prokMSA_id:093292 AY145878 isolate DGGE band RWA51 prokMSA_id:077199 AY153455 eukaryote isolate DGGE gel band B9 ; plastid plastid product prokMSA_id:081616 AY193966 clone SC138 prokMSA_id:081297 AY193968 clone SC145 prokMSA_id:091776 AY258600 diatom DGGE Band 2 prokMSA_id:091937 AY258603 diatom DGGE Band 5 prokMSA_id:091482 AY258604 diatom DGGE Band 6 prokMSA_id:086986 AY274227 diatom isolate DGGE band GWS-FL-1 ; chloroplast chloroplast product prokMSA_id:087499 AY274235 alga isolate DGGE band GWS-AG-1 prokMSA_id:086837 AY274244 alga isolate DGGE band GWS-SE-1 prokMSA_id:087443 AY274245 alga isolate DGGE band GWS-SE-2 prokMSA_id:087428 AY274246 alga isolate DGGE band GWS-SE-3 prokMSA_id:089767 AY304018 soil clone Dpcom57 prokMSA_id:088921 AY305382 diatom ; plastid plastid product prokMSA_id:089430 AY311786 diatom Dpcom88 ; plastid plastid product prokMSA_id:090736 AY311797 diatom Dpcom99 ; plastid plastid product prokMSA_id:089431 AY311803 diatom Dpcom105 ; plastid plastid product prokMSA_id:090759 AY311808 diatom Dpcom109 ; plastid plastid product prokMSA_id:090196 AY311812 diatom Dpcom114 ; plastid plastid product prokMSA_id:089950 AY311814 diatom Dpcom116 ; plastid plastid product prokMSA_id:090763 AY311818 diatom Dpcom120 ; plastid plastid product prokMSA_id:090391 AY323135 alpha clone A115-14 prokMSA_id:090291 AY323170 cyanobacterium clone A115-5 prokMSA_id:088164 AY323172 cyanobacterium clone A115-11 prokMSA_id:093362 AY361930 clone P8-GEN-18 prokMSA_id:003399 D26209 soil from paddy field clone PAD22. prokMSA_id:003398 D26219 soil from paddy field clone PAD32. prokMSA_id:024097 U96445 Amphora delicatissima prokMSA_id:042373 U96446 Navicula salinicola prokMSA_id:003404 Z77360 str. 1-140 C19. prokMSA_id:003444 Z77361 str. 1-140 C2. prokMSA_id:003405 Z77365 str. 1-140 C24. prokMSA_id:003406 Z77366 str. 1-140 C25. prokMSA_id:003407 Z77376 str. 1-140 C35. prokMSA_id:003408 Z77390 str. 1-140 C9. prokMSA_id:003409 Z77391 str. 1-420 C1. prokMSA_id:003410 Z77394 str. 1-420 C12. prokMSA_id:003411 Z77396 str. 1-420 C14. prokMSA_id:003412 Z77397 str. 1-420 C16. prokMSA_id:003413 Z77403 str. 1-420 C27. prokMSA_id:003414 Z77408 str. 1-420 C31. prokMSA_id:003415 Z77409 str. 1-420 C35. prokMSA_id:003416 Z77411 str. 1-420 C39. prokMSA_id:003417 Z77413 str. 1-420 C41. prokMSA_id:003418 Z77414 str. 1-420 C42. prokMSA_id:003419 Z77423 str. 1-420 C57. prokMSA_id:003420 Z77426 str. 1-420 C6. prokMSA_id:003421 Z77428 str. 1-420 C61. prokMSA_id:003422 Z77431 str. 1-420 C64. prokMSA_id:003423 Z77434 str. 1-420 C7. prokMSA_id:003424 Z77435 str. 1-420 C8. prokMSA_id:003425 Z77436 str. 1-420 C9. prokMSA_id:003426 Z77447 str. 1-700 C20. prokMSA_id:003427 Z77459 str. 1-700 C37. prokMSA_id:003428 Z77475 str. 2-100 C1.11. prokMSA_id:003429 Z77493 str. 2-100 C13. prokMSA_id:003430 Z77499 str. 2-100 C21. prokMSA_id:034239 Z77502 2-100 C24 prokMSA_id:003431 Z77511 str. 2-400 C2.1. prokMSA_id:003432 Z77512 str. 2-400 C2.11. prokMSA_id:003433 Z77513 str. 2-400 C2.12. prokMSA_id:003434 Z77518 str. 2-400 C2.17. prokMSA_id:003435 Z77520 str. 2-400 C2.21. prokMSA_id:003436 Z77523 str. 2-400 C2.28. prokMSA_id:003437 Z77526 str. 2-400 C2.30. prokMSA_id:020934 Z77527 2-400 C2.32 prokMSA_id:041635 Z77533 2-400 C2.6 prokMSA_id:026129 Z77541 2-400 C2/2.15 prokMSA_id:046829 Z77544 2-400 C2/2.20 prokMSA_id:035124 Z77546 2-400 C2/2.22 prokMSA_id:016574 Z77547 2-400 C2/2.25 prokMSA_id:048302 Z77548 2-400 C2/2.26 prokMSA_id:035966 Z77560 1-140 C2 prokMSA_id:048112 Z77575 1-140 C9 prokMSA_id:023841 Z77610 2-100 C13 prokMSA_id:030181 Z77617 2-100 C24 prokMSA_id:036071 Z77623 2-400 C2.11 prokMSA_id:031045 Z77628 2-400 C2.21 prokMSA_id:028008 Z77633 2-400 C2.30 prokMSA_id:050564 Z77642 2-400 C2/2.14 prokMSA_id:044383 Z77645 2-400 C2/2.26 2.21.2.3.2 EUGLENA_SUBGROUP 68 seqs 2.21.2.3.2.001 OTU 6 seqs prokMSA_id:053039 NC_001603 Euglena gracilis chloroplast complete genome prokMSA_id:003457 V00159 Euglena gracilis euglenophycean alga -- chloroplast. prokMSA_id:003458 X12890 Euglena gracilis euglenophycean alga -- chloroplast. prokMSA_id:003461 X70810 Euglena gracilis euglenophycean alga -- chloroplast =rrnC prokMSA_id:003460 X70810 Euglena gracilis euglenophycean alga -- chloroplast =rrnB prokMSA_id:003459 X70810 Euglena gracilis euglenophycean alga -- chloroplast = 2.21.2.3.2.002 OTU 1 seq prokMSA_id:003456 X70810 Euglena gracilis euglenophycean alga -- chloroplast. 2.21.2.3.2.003 OTU 3 seqs prokMSA_id:047280 AJ294725 Astasia longa complete chloroplast genome prokMSA_id:052998 NC_002652 Astasia longa plastid complete genome prokMSA_id:003454 X14386 Astasia longa str. CCAP 1204-17a colorless euglenophycean alga -- 2.21.2.3.2.004 OTU 1 seq prokMSA_id:003452 X74006 Prototheca zopfii str. SAG 263-1a green alga -- chloroplast. 2.21.2.3.2.005 OTU 2 seqs prokMSA_id:003451 U21491 Chlorarachnion sp. CCMP 240 amoeboflagellate -- chloroplast. prokMSA_id:070779 U21491 Chlorarachnion CCMP240 chloroplast chloroplast complete 2.21.2.3.2.006 OTU 1 seq prokMSA_id:003450 U21490 Chlorarachnion reptans CCMP 238 amoeboflagellate -- chloroplast. 2.21.2.3.2.007 OTU 2 seqs prokMSA_id:003449 U21492 Chlorarachnion sp. CCMP 242 amoeboflagellate -- chloroplast. prokMSA_id:072174 U21492 Chlorarachnion CCMP242 small subunit chloroplast chloroplast complete 2.21.2.3.2.008 OTU 1 seq prokMSA_id:016320 AF289244 Euglena stellata ; chloroplast chloroplast product 2.21.2.3.2.009 OTU 1 seq prokMSA_id:024874 AF289246 Euglena tristella ; chloroplast chloroplast product 2.21.2.3.2.010 OTU 1 seq prokMSA_id:026708 AF289254 Trachelomonas volvocina ; chloroplast chloroplast product 2.21.2.3.2.011 OTU 1 seq prokMSA_id:033162 AF289242 Euglena polymorpha ; chloroplast chloroplast product 2.21.2.3.2.012 OTU 1 seq prokMSA_id:034641 AF289251 Phacus pleuronectes ; chloroplast chloroplast product 2.21.2.3.2.013 OTU 1 seq prokMSA_id:036276 AF277517 alpha SIC.926 2.21.2.3.2.014 OTU 1 seq prokMSA_id:038279 AF289250 Phacus orbicularis ; chloroplast chloroplast product 2.21.2.3.2.015 OTU 3 seqs prokMSA_id:039492 AF289241 Euglena geniculata ; chloroplast chloroplast product prokMSA_id:077335 AY070251 Euglena myxocylindracea UTEX 1989 ; chloroplast chloroplast product prokMSA_id:077406 AY070252 Euglena geniculata SAG 1224-4F ; chloroplast chloroplast product 2.21.2.3.2.016 OTU 1 seq prokMSA_id:040174 AF289253 Strombomonas costata ; chloroplast chloroplast product 2.21.2.3.2.017 OTU 1 seq prokMSA_id:040682 AF289238 Colacium vesiculosum ; chloroplast chloroplast product 2.21.2.3.2.018 OTU 1 seq prokMSA_id:044394 AF289158 rhodophyte PRD01a010B 2.21.2.3.2.019 OTU 1 seq prokMSA_id:046777 U70717 eukaryote OM81 2.21.2.3.2.020 OTU 1 seq prokMSA_id:049499 AF316709 Crater Lake CL120-102 2.21.2.3.2.021 OTU 1 seq prokMSA_id:049945 AF445714 eukaryote clone SM2B11 ; plastid plastid product 2.21.2.3.2.022 OTU 1 seq prokMSA_id:051136 AF289243 Euglena spirogyra ; chloroplast chloroplast product 2.21.2.3.2.023 OTU 1 seq prokMSA_id:059927 AF538865 Helicosporidium sp. ex Cyrtobagous salviniae ; plastid plastid product 2.21.2.3.2.024 OTU 1 seq prokMSA_id:063233 AF523993 clone FW124 2.21.2.3.2.025 OTU 1 seq prokMSA_id:083959 AF534438 eukaryote clone TLM14 2.21.2.3.2.999 poor quality 32 seqs prokMSA_id:018842 AB041319 ECS49 prokMSA_id:022046 AF047635 TRA1-20 prokMSA_id:056690 AF141506 eukaryote clone CRE-PA21 ; chloroplast chloroplast product prokMSA_id:056262 AF141561 eukaryote clone CRO-11 ; chloroplast chloroplast product prokMSA_id:021077 AF141566 eukaryote clone CRO-17 ; chloroplast chloroplast product prokMSA_id:068923 AF141570 eukaryote clone CRO-22 ; chloroplast chloroplast product prokMSA_id:068922 AF141573 eukaryote clone CRO-28 ; chloroplast chloroplast product prokMSA_id:068921 AF141576 eukaryote clone CRO-32 ; chloroplast chloroplast product prokMSA_id:003455 AF142936 clone PENDANT-24. prokMSA_id:039583 AF277479 alpha SIC.42340 prokMSA_id:031525 AF277486 alpha SIC.42383 prokMSA_id:022457 AF277503 alpha SIC.8120 prokMSA_id:028356 AF277548 alpha ARCTIC.437 prokMSA_id:068904 AF289163 clone PRD01b003B prokMSA_id:032290 AF316706 Crater Lake CL0-31 prokMSA_id:032298 AF316707 Crater Lake CL0-35 prokMSA_id:029048 AF316708 Crater Lake CL0-93 prokMSA_id:069202 AF441870 alpha clone CD13H5 prokMSA_id:047806 AF446344 FL07G04 prokMSA_id:067066 AF499400 clone JCL1-35 prokMSA_id:067060 AF499401 clone JCL1-36 prokMSA_id:073532 AF535201 euglenid clone CD1H11 prokMSA_id:058812 AF540036 phototrophic eukaryote DGGE gel band ESR BR 1 ; plastid plastid product prokMSA_id:061658 AJ427442 algae chloroplast clone Sta4-34 prokMSA_id:057272 AJ518209 clone Mul2P1-63 prokMSA_id:056864 AJ518736 clone Sai4P3-60 prokMSA_id:093136 AJ580971 alga chloroplast DGGE band 6 prokMSA_id:024417 AY038477 eukaryote clone CD2E8 prokMSA_id:070513 AY038517 euglenid clone CD1H1 ; chloroplast chloroplast product prokMSA_id:089492 AY311790 Dpcom92 prokMSA_id:088435 AY311799 Dpcom101 prokMSA_id:003453 X53183 Ochromonas danica str. SAG 933-7 golden alga -- chloroplast. 2.21.2.3.3 OCHROSPHAERA_SUBGROUP 38 seqs 2.21.2.3.3.003 OTU 13 seqs prokMSA_id:048463 AF172719 Chrysochromulina polylepis small subunit ; chloroplast chloroplast product prokMSA_id:023395 AF316700 Crater Lake CL120-71 prokMSA_id:034744 AF469400 clone 33-PA67B00 prokMSA_id:064900 AY095882 plastid pT-411 prokMSA_id:091711 AY135677 phototrophic eukaryote clone ANT18/2_25 ; plastid plastid product prokMSA_id:003462 U32671 clone OM21. prokMSA_id:022013 U70719 haptophyte OM125 prokMSA_id:035915 U70720 haptophyte OM153 prokMSA_id:003465 X65101 Ochrosphaera sp. str. 181 haptophyte -- chloroplast. prokMSA_id:003467 X75518 Isochrysis sp. flagellate alga -- chloroplast. prokMSA_id:003466 X80390 Ochrosphaera neapolitana CCMP 593 haptophyte -- chloroplast. prokMSA_id:003468 X82156 Emiliania huxleyi str. Plymouth Marine Laborator PML 92D prokMSA_id:072546 X99077 Ochrosphaera neapolitana plastid tRNAIle tRNAAla and 23S genes 2.21.2.3.3.004 OTU 1 seq prokMSA_id:017082 AF277481 Isochrysidales sp. SIC.42345 2.21.2.3.3.005 OTU 1 seq prokMSA_id:068876 AF332521 Eimeria arizonensis ; apicoplast apicoplast product 2.21.2.3.3.006 OTU 1 seq prokMSA_id:036016 AF172718 Gymnodinium breve strain CCMP718 small subunit ; chloroplast chloroplast product 2.21.2.3.3.007 OTU 1 seq prokMSA_id:040684 AB027236 Gymnodinium mikimotoi plastid 2.21.2.3.3.008 OTU 1 seq prokMSA_id:047593 U70723 eukaryote OM270 2.21.2.3.3.009 OTU 1 seq prokMSA_id:048657 AF316701 Crater Lake CL120-75 2.21.2.3.3.010 OTU 1 seq prokMSA_id:052006 AF172716 Gymnodinium galatheanum strain KT-77B small subunit ; chloroplast chloroplast product 2.21.2.3.3.011 OTU 1 seq prokMSA_id:090132 AY321395 clone L23 2.21.2.3.3.012 OTU 1 seq prokMSA_id:091487 AY135684 phototrophic eukaryote clone ANT18/2_96 ; plastid plastid product 2.21.2.3.3.999 poor quality 16 seqs prokMSA_id:039620 AB041318 ECS48 prokMSA_id:074145 AF209007 vent ML-12 prokMSA_id:072180 AF209008 vent ML-13 prokMSA_id:020094 AF268285 phytoplankton ESR 1 prokMSA_id:040411 AF316699 Crater Lake CL120-48 prokMSA_id:045650 AF316702 Crater Lake CL120-88 prokMSA_id:068875 AF332522 Eimeria nieschulzi ; apicoplast apicoplast product prokMSA_id:056001 AF332523 Eimeria rioarribaensis ; apicoplast apicoplast product prokMSA_id:069555 AY100504 cyanobacterium clone TA3015a_1 prokMSA_id:072013 U85149 eukaryote clone ACK-C81 chloroplast chloroplast prokMSA_id:068829 Y11430 T.gondii plastid tRNA-Ala tRNA-Asp tRNA-Leu tRNA-Arg tRNA-Val tRNA-Arg tRNA-Met tRNA-Thr genes and and 23S genes prokMSA_id:003469 Z77353 str. 1-140 C10. prokMSA_id:003463 Z77356 str. 1-140 C14. prokMSA_id:003464 Z77491 str. 2-100 C10. prokMSA_id:031345 Z77556 1-140 C14 prokMSA_id:032681 Z77609 2-100 C10 2.21.2.3.4 PYRENOMONAS_SUBGROUP 62 seqs 2.21.2.3.4.003 OTU 15 seqs prokMSA_id:052460 AB060935 eukaryote clone:B1 prokMSA_id:056317 AB073109 Cryptomonas ovata plastid prokMSA_id:060255 AB073110 Chroomonas placoidea plastid prokMSA_id:069145 AB073111 Geminigera cryophila plastid prokMSA_id:060253 AB073112 Hemiselmis virescens plastid prokMSA_id:060252 AB073113 Proteomonas sulcata plastid prokMSA_id:069194 AB073114 Dinophysis acuminata plastid prokMSA_id:071043 AB073115 Dinophysis fortii plastid prokMSA_id:069410 AB073116 Dinophysis norvegica plastid prokMSA_id:069432 AF041468 Guillardia theta complete plastid genome prokMSA_id:085239 AF534437 eukaryote clone TLM13/TLMdgge20 prokMSA_id:051823 NC_000926 Guillardia theta chloroplast complete genome prokMSA_id:003472 S73904 Cryptomonas phi str. F 2-flagellae cryptomonad -- chloroplast. prokMSA_id:025107 U70724 cryptomonad OM283 prokMSA_id:003470 X55015 Pyrenomonas salina cryptomonad -- chloroplast. 2.21.2.3.4.004 OTU 1 seq prokMSA_id:069457 AB073108 Chilomonas paramecium leucoplast 2.21.2.3.4.005 OTU 2 seqs prokMSA_id:016609 AF170714 Stylonema alsidii small subunit ; plastid plastid product prokMSA_id:047632 AF170719 Rhodosorus marinus small subunit ; plastid plastid product 2.21.2.3.4.006 OTU 1 seq prokMSA_id:027542 AF170715 Flintiella sanguinaria small subunit ; plastid plastid product 2.21.2.3.4.007 OTU 1 seq prokMSA_id:029775 AF170713 Compsopogon coeruleus small subunit ; plastid plastid product 2.21.2.3.4.008 OTU 1 seq prokMSA_id:052865 AF170717 Porphyra leucosticta small subunit ; plastid plastid product 2.21.2.3.4.009 OTU 6 seqs prokMSA_id:080457 AF530383 Dinophysis acuminata strain acumGC08 small subunit ; plastid plastid product prokMSA_id:080721 AF530384 Dinophysis acuminata strain acumGC09 small subunit ; plastid plastid product prokMSA_id:080033 AF530385 Dinophysis acuminata strain acumWH10 clone 3B small subunit ; plastid plastid product prokMSA_id:079640 AF530386 Dinophysis acuminata strain acumWH10 clone 3D small subunit ; plastid plastid product prokMSA_id:080010 AF530387 Dinophysis acuta strain acutNP09 small subunit ; plastid plastid product prokMSA_id:080089 AF530388 Dinophysis norvegica strain norvCC04 small subunit ; plastid plastid product 2.21.2.3.4.999 poor quality 35 seqs prokMSA_id:024394 AF107323 freshwater LCK-26 prokMSA_id:026899 AF107328 freshwater LCK-38 prokMSA_id:068108 AF365628 clone BT60PF4BF3 prokMSA_id:069730 AF365672 clone BM89DS6BbF5 prokMSA_id:063822 AF454313 plastid clone ML110M-7 prokMSA_id:063820 AF454314 plastid clone ML1218M-19 prokMSA_id:063819 AF454315 plastid clone ML1218M-21 prokMSA_id:063817 AF454317 plastid clone ML1218M-24 prokMSA_id:063816 AF454318 plastid clone ML1218M-26 prokMSA_id:055962 AF454319 plastid clone ML1218M-3 prokMSA_id:063814 AF454320 plastid clone ML1218M-4 prokMSA_id:063812 AF454323 plastid clone ML310M-1a prokMSA_id:063807 AF454330 plastid clone ML316M-3 prokMSA_id:063806 AF454331 plastid clone ML320J-26 prokMSA_id:063805 AF454332 plastid clone ML320J-27 prokMSA_id:063804 AF454334 plastid clone ML320J-7 prokMSA_id:063802 AF454335 plastid clone ML512M-1 prokMSA_id:063799 AF454337 plastid clone ML512M-11 prokMSA_id:063797 AF454340 plastid clone ML512M-4 prokMSA_id:063795 AF454341 plastid clone ML513M-21 prokMSA_id:060778 AF491678 cryptomonad clone SFD1-13 ; chloroplast chloroplast product prokMSA_id:073189 AF497899 alga isolate WL11-17 ; chloroplast chloroplast product prokMSA_id:069476 AF497900 alga isolate WL11-15 ; chloroplast chloroplast product prokMSA_id:058259 AF544644 eukaryote DGGE gel band H11-10 ; chloroplast chloroplast product prokMSA_id:072132 AJ239996 algal chloroplast clone DGGE band CIBAC-9 prokMSA_id:069989 AJ240002 algal chloroplast clone DGGE band CICYA-1 prokMSA_id:039245 AJ240013 algal chloroplast clone DGGE band VICYA-2 prokMSA_id:072773 AJ422237 algal chloroplast isolate CYA-4 prokMSA_id:092141 AJ580966 alga plastid DGGE band 1 prokMSA_id:092806 AJ580967 alga plastid DGGE band 2 prokMSA_id:093052 AJ580968 alga plastid DGGE band 3 prokMSA_id:092965 AJ580970 alga chloroplast DGGE band 5 prokMSA_id:050103 U85146 eukaryote clone ACK-W11 chloroplast chloroplast prokMSA_id:074086 U85147 eukaryote clone ACK-C39 chloroplast chloroplast prokMSA_id:003471 Z77448 str. 1-700 C21. 2.21.2.3.5 PORPHYRA_SUBGROUP 25 seqs 2.21.2.3.5.001 OTU 5 seqs prokMSA_id:019992 AF170716 Bangia fuscopurpurea small subunit ; plastid plastid product prokMSA_id:003478 L07257 Porphyra purpurea alga -- chloroplast = . prokMSA_id:003477 L07258 Porphyra purpurea alga -- chloroplast =rrnB . prokMSA_id:053015 NC_000925 Porphyra purpurea chloroplast complete genome prokMSA_id:069121 U38804 Porphyra purpurea chloroplast complete genome 2.21.2.3.5.002 OTU 1 seq prokMSA_id:003476 X81903 Glaucosphaera vacuolata str. SAG B 13.82 blue green alga -- 2.21.2.3.5.003 OTU 1 seq prokMSA_id:003475 Z18289 Palmaria palmata edible? red alga -- chloroplast. 2.21.2.3.5.004 OTU 1 seq prokMSA_id:003474 Z29521 Chondrus crispus red alga -- chloroplast. 2.21.2.3.5.005 OTU 1 seq prokMSA_id:003473 X54299 Antithamnion sp. red alga -- chloroplast. 2.21.2.3.5.006 OTU 1 seq prokMSA_id:019387 AF170721 Thorea violacea small subunit ; plastid plastid product 2.21.2.3.5.007 OTU 2 seqs prokMSA_id:028521 AF170711 Chroothece richteriana small subunit ; plastid plastid product prokMSA_id:047228 AF170712 Chroodactylon ramosum small subunit ; plastid plastid product 2.21.2.3.5.008 OTU 1 seq prokMSA_id:080982 AF530390 Florideophyceae sp. ex Dinophysis acuminata small subunit ; plastid plastid product 2.21.2.3.5.999 poor quality 12 seqs prokMSA_id:068253 AF365465 clone BM89MF1BD5 prokMSA_id:068228 AF365495 clone BM89MF5BB10 prokMSA_id:068155 AF365576 clone BT49MF4BG9 prokMSA_id:056471 AF365580 clone BT60MF2BA12 prokMSA_id:068149 AF365582 clone BT60MF2BA3 prokMSA_id:067984 AF365780 clone BM89PA1BbA3 prokMSA_id:067957 AF365814 clone BT60PA10BA5 prokMSA_id:079929 AF530389 Florideophyceae sp. ex Dinophysis acuminata small subunit ; plastid plastid product prokMSA_id:070370 AF544911 phototrophic eukaryote clone A191-22 ; chloroplast chloroplast product prokMSA_id:092069 AJ580969 cyanobacterium DGGE band 4 prokMSA_id:052357 U85148 eukaryote clone ACK-M11 chloroplast chloroplast prokMSA_id:073172 U85150 eukaryote clone ACK-M8 chloroplast chloroplast 2.21.2.3.6 CYANIDIUM_SUBGROUP 6 seqs 2.21.2.3.6.001 OTU 4 seqs prokMSA_id:051285 AF170718 Cyanidium caldarium small subunit ; plastid plastid product prokMSA_id:018692 AF356012 rhodophyte clone CY4 ; plastid plastid product prokMSA_id:047684 AF356019 Rhodophyte NZ4 ; plastid plastid product prokMSA_id:003479 X52985 Cyanidium caldarium str. 14-1-1 red alga -- chloroplast. 2.21.2.3.6.002 OTU 2 seqs prokMSA_id:022181 AF022186 Cyanidium caldarium strain RK1 chloroplast complete genome prokMSA_id:045082 NC_001840 Cyanidium caldarium chloroplast complete genome 2.21.2.4 GREEN_ALGAE_CHLOROPLASTS 159 seqs 2.21.2.4.001 OTU 2 seqs prokMSA_id:003500 D11348 Chlorella saccharophila subsp. ellipsoidea str. 3.80 green alga prokMSA_id:070500 D11348 Chlorella saccharophila strain 3.80 chloroplast 2.21.2.4.002 OTU 9 seqs prokMSA_id:038828 AB001684 Chlorella vulgaris C-27 chloroplast complete prokMSA_id:043787 AF278746 Koliella spiculiformis small subunit ; chloroplast chloroplast product prokMSA_id:085873 AF497781 Raphidonema nivale strain CCAP ; chloroplast chloroplast product prokMSA_id:085205 AF497783 Koliella planctonica ; chloroplast chloroplast product prokMSA_id:003489 D11347 Chlorella vulgaris green alga -- chloroplast. prokMSA_id:070155 D11347 Chlorella vulgaris strain 211-1e chloroplast prokMSA_id:049481 NC_001865 Chlorella vulgaris chloroplast complete genome prokMSA_id:003499 X16579 Chlorella vulgaris str. 211-11b green alga -- chloroplast. prokMSA_id:003483 X65689 Chlorella sorokiniana str. 211-8k green alga -- chloroplast. 2.21.2.4.003 OTU 2 seqs prokMSA_id:003485 NONE Chlamydomonas eugametos str. UTEX 9 mt+ green alga -- prokMSA_id:003498 X15850 Chlamydomonas moewusii str. UTEX 97 mt+ green alga -- 2.21.2.4.004 OTU 2 seqs prokMSA_id:003497 D11349 Chlorella saccharophila subsp. saccharophila str. 211-1d green prokMSA_id:071886 D11349 Chlorella saccharophila strain 211-1d chloroplast 2.21.2.4.005 OTU 1 seq prokMSA_id:003495 X65688 Chlorella protothecoides str. 211-7a green alga -- 2.21.2.4.006 OTU 1 seq prokMSA_id:003494 X65100 Chlorella mirabilis str. 748-I green alga -- chloroplast. 2.21.2.4.007 OTU 1 seq prokMSA_id:003493 NONE Chlamydomonas parkeae str. NIES-440 green alga -- chloroplast. 2.21.2.4.008 OTU 1 seq prokMSA_id:003492 AF159687 clone HstpL33. 2.21.2.4.009 OTU 1 seq prokMSA_id:003491 NONE Pyramimonas parkeae str. NIES 254 green alga -- chloroplast. 2.21.2.4.010 OTU 1 seq prokMSA_id:003490 X76084 Nanochlorum eucaryotum green coccoidal alga -- chloroplast. 2.21.2.4.011 OTU 3 seqs prokMSA_id:003488 D11346 Chlorella kessleri str. 211-11h green alga -- chloroplast. prokMSA_id:071439 D11346 Chlorella kessleri strain 211-11h chloroplast prokMSA_id:003481 X65099 Chlorella kessleri str. 211-11g green alga -- chloroplast. 2.21.2.4.012 OTU 1 seq prokMSA_id:003487 L39865 Chlamydomonas pallidostigmatica green alga -- chloroplast. 2.21.2.4.013 OTU 1 seq prokMSA_id:003486 NONE Yamagishiella unicocca str. X-441 green alga -- chloroplast. 2.21.2.4.014 OTU 3 seqs prokMSA_id:079762 BK000554 TPA: Chlamydomonas reinhardtii chloroplast complete genome prokMSA_id:003484 J01395 Chlamydomonas reinhardtii green alga -- chloroplast. prokMSA_id:003480 NONE Gonium pectorale str. NIES-468 green alga -- chloroplast. 2.21.2.4.015 OTU 1 seq prokMSA_id:003482 X12742 Chlorella ellipsoidea str. IAM-C87 green alga -- chloroplast. 2.21.2.4.016 OTU 1 seq prokMSA_id:016688 AF394203 Polytoma mirum ; leucoplast leucoplast product 2.21.2.4.017 OTU 2 seqs prokMSA_id:017005 AF316710 Crater Lake CL120-14 prokMSA_id:045621 AF316711 Crater Lake CL120-78 2.21.2.4.018 OTU 1 seq prokMSA_id:018107 AF394205 Prototheca wickerhamii ; leucoplast leucoplast product 2.21.2.4.019 OTU 1 seq prokMSA_id:020563 AF289245 Euglena tripteris ; chloroplast chloroplast product 2.21.2.4.020 OTU 1 seq prokMSA_id:021121 AF268235 prasinophycean EBAC36H07 ; chloroplast chloroplast product 2.21.2.4.021 OTU 1 seq prokMSA_id:023956 AF316698 Crater Lake CL120-1 2.21.2.4.022 OTU 1 seq prokMSA_id:025212 U70715 prasinophyte clone OM5 2.21.2.4.023 OTU 2 seqs prokMSA_id:025446 AF278751 Stichococcus bacillaris small subunit ; chloroplast chloroplast product prokMSA_id:073892 AJ292689 WD215 clone WD215 2.21.2.4.024 OTU 2 seqs prokMSA_id:097540 AY389515 Codium fragile ; chloroplast chloroplast product prokMSA_id:026799 U08345 Codium fragile chloroplast encoding chloroplast 2.21.2.4.025 OTU 1 seq prokMSA_id:029547 AF316703 Crater Lake CL120-96 2.21.2.4.026 OTU 1 seq prokMSA_id:030353 AF289247 Eutreptia viridis ; chloroplast chloroplast product 2.21.2.4.027 OTU 2 seqs prokMSA_id:030789 AF268223 prasinophycean EBAC23 ; chloroplast chloroplast product prokMSA_id:037820 AF268228 prasinophycean EBAC38 ; chloroplast chloroplast product 2.21.2.4.028 OTU 1 seq prokMSA_id:031682 AF289249 Lepocinclis fusiformis ; chloroplast chloroplast product 2.21.2.4.029 OTU 3 seqs prokMSA_id:047887 AF374186 Chlamydomonas humicola rrn16 ; chloroplast chloroplast product prokMSA_id:031996 AF374190 Chlamydomonas dysosmos rrn16 ; chloroplast chloroplast product prokMSA_id:049287 AF394204 Chlamydomonas applanata ; chloroplast chloroplast product 2.21.2.4.030 OTU 1 seq prokMSA_id:073012 AY145660 eukaryote FL12E12 ; plastid plastid product 2.21.2.4.031 OTU 2 seqs prokMSA_id:032850 AJ222802 Prototheca wickerhamii 5.0 kb plastid fragment of genecluster prokMSA_id:048130 AJ245645 Prototheca wickerhamii chloroplast genome 2.21.2.4.032 OTU 1 seq prokMSA_id:034287 AF316705 Crater Lake CL120-136 2.21.2.4.033 OTU 1 seq prokMSA_id:036793 AF142938 Diatom PENDANT-26 2.21.2.4.034 OTU 1 seq prokMSA_id:038024 AF316712 Crater Lake CL120-109 2.21.2.4.035 OTU 1 seq prokMSA_id:038040 AF445744 firmicute clone SM2H06 2.21.2.4.036 OTU 1 seq prokMSA_id:038948 AF289252 Phacus skujai ; chloroplast chloroplast product 2.21.2.4.037 OTU 2 seqs prokMSA_id:039824 AF278747 Koliella sempervirens small subunit ; chloroplast chloroplast product prokMSA_id:083443 AF497782 Raphidonema nivale strain IAM C-166 ; chloroplast chloroplast product 2.21.2.4.038 OTU 1 seq prokMSA_id:057881 AF547096 Dunaliella salina ; chloroplast chloroplast product 2.21.2.4.039 OTU 1 seq prokMSA_id:048283 AF394207 Polytoma oviforme ; leucoplast leucoplast product 2.21.2.4.040 OTU 2 seqs prokMSA_id:050338 AF394206 Scenedesmus obliquus ; chloroplast chloroplast product prokMSA_id:081505 AJ548895 Scenedesmus sp. chloroplast clone BIOEST-6 2.21.2.4.041 OTU 1 seq prokMSA_id:052819 AF278749 Raphidonema longiseta small subunit ; chloroplast chloroplast product 2.21.2.4.042 OTU 1 seq prokMSA_id:059928 AF538864 Helicosporidium sp. ex Simulium jonesii ; plastid plastid product 2.21.2.4.043 OTU 1 seq prokMSA_id:063818 AF454327 plastid clone ML310M-37 2.21.2.4.044 OTU 1 seq prokMSA_id:064133 AF477889 clone 26-UMH 31% pond 2.21.2.4.045 OTU 1 seq prokMSA_id:076266 AY153462 eukaryote isolate clone3-14 ; plastid plastid product 2.21.2.4.046 OTU 1 seq prokMSA_id:081434 AY187492 eukaryote clone SC82 ; plastid plastid product 2.21.2.4.047 OTU 1 seq prokMSA_id:085384 AY250858 chlorophyte clone BPU108 ; chloroplast chloroplast product 2.21.2.4.048 OTU 2 seqs prokMSA_id:088355 AY191344 marine eukaryote isolate ODP1176A22X_15_B ; plastid plastid product prokMSA_id:088660 AY191345 marine eukaryote isolate ODP1176A22X_17_B ; plastid plastid product 2.21.2.4.049 OTU 1 seq prokMSA_id:094800 AY375566 phototrophic eukaryote clone Dpcom143 ; chloroplast chloroplast product 2.21.2.4.999 poor quality 85 seqs prokMSA_id:050990 AF125174 Picocystis salinarum chloroplast chloroplast 3' end and prokMSA_id:051585 AF141512 eukaryote clone CRE-PA27 ; chloroplast chloroplast product prokMSA_id:036701 AF240479 atmospheric RM2B-1 prokMSA_id:039887 AF316704 Crater Lake CL120-107 prokMSA_id:017254 AF350259 Chlorella vulgaris ; chloroplast chloroplast product prokMSA_id:036710 AF350260 Chlorella vulgaris ; chloroplast chloroplast product prokMSA_id:068237 AF365484 clone BM89MF1BH3 prokMSA_id:068038 AF365712 clone BT60DS1BG1 prokMSA_id:035401 AF374187 Polytoma obtusum rrn16 ; chloroplast chloroplast product prokMSA_id:042846 AF374188 Polytoma oviforme rrn16 ; chloroplast chloroplast product prokMSA_id:042578 AF374189 Polytoma uvella rrn16 ; chloroplast chloroplast product prokMSA_id:019219 AF394208 Polytoma uvella ; leucoplast leucoplast product prokMSA_id:068926 AF394209 Polytoma uvella ; leucoplast leucoplast product prokMSA_id:051270 AF428721 clone CRP99-67 prokMSA_id:034405 AF428957 clone CR98-35-75 prokMSA_id:063821 AF454312 plastid clone ML110M-6 prokMSA_id:063813 AF454321 plastid clone ML1218M-8 prokMSA_id:063810 AF454324 plastid clone ML310M-2 prokMSA_id:063809 AF454326 plastid clone ML310M-21 prokMSA_id:056524 AF454329 plastid clone ML316M-20 prokMSA_id:063803 AF454333 plastid clone ML320J-34 prokMSA_id:063798 AF454338 plastid clone ML512M-2 prokMSA_id:063796 AF454339 plastid clone ML512M-3 prokMSA_id:063793 AF454342 plastid clone ML513M-22 prokMSA_id:016901 AF473957 cyanobacterium A190-3 prokMSA_id:064175 AF477836 prokaryote isolate DGGE Band 62-UIB 8% pond prokMSA_id:060769 AF491681 prasinophyte clone SFD1-34 ; chloroplast chloroplast product prokMSA_id:027104 AJ238891 Chlorella sp. chloroplast isolate I prokMSA_id:025663 AJ242747 Chlorella emersonii chloroplast strain NIES 690 prokMSA_id:042513 AJ242748 Chlorella vulgaris chloroplast strain IAM C-27 prokMSA_id:024599 AJ242749 Chlorella pyrenoidosa chloroplast strain IAM C-101 prokMSA_id:034404 AJ242750 Chlorella vulgaris chloroplast strain CCAP 211/19 prokMSA_id:040905 AJ242751 Chlorella emersonii chloroplast strain NIES 690 prokMSA_id:052757 AJ242753 Chlorella vulgaris chloroplast strain IAM C-27 prokMSA_id:039313 AJ242754 Chlorella vulgaris chloroplast strain NIES 227 prokMSA_id:018826 AJ242767 Chlorella luteoviridis chloroplast strain CCAP 211/3 prokMSA_id:040090 AJ242768 Chlorella luteoviridis chloroplast strain CCAP 211/3 prokMSA_id:037721 AJ242769 Chlorella vulgaris chloroplast strain IAM C-208 prokMSA_id:040819 AJ242770 Chlorella vulgaris chloroplast strain CCAP 211/19 prokMSA_id:034295 AJ242771 Chlorella vulgaris chloroplast strain NIES 227 prokMSA_id:016886 AJ292688 WD2118 clone WD2118 prokMSA_id:051784 AJ292925 WR844 clone WR844 prokMSA_id:049046 AJ298385 marine algae BY-10 prokMSA_id:049592 AJ387748 Chlorella sp. CS34 region isolate 216 prokMSA_id:046745 AJ387749 Chlorella sp. CS34 region isolate 21 prokMSA_id:026787 AJ387750 Chlorella vulgaris CS12 region strain IAM C-208 prokMSA_id:047508 AJ387751 Chlorella pyrenoidosa CS34 region strain IAM C-210 prokMSA_id:021955 AJ387752 Chlorella sp. CS34 region isolate V prokMSA_id:052742 AJ387753 Chlorella sp. CS12 region isolate 216 prokMSA_id:016639 AJ387754 Chlorella sp. CS12 region isolate 21 prokMSA_id:036473 AJ387755 Chlorella sp. CS12 region isolate I prokMSA_id:032970 AJ387756 Chlorella pyrenoidosa CS12 region strain IAM C-210 prokMSA_id:045393 AJ387757 Chlorella sp. CS12 region isolate V prokMSA_id:061671 AJ427424 algae chloroplast clone Sta1-25 prokMSA_id:061669 AJ427425 algae chloroplast clone Sta1-15 prokMSA_id:061667 AJ427426 algae chloroplast clone Sta1-34 prokMSA_id:061668 AJ427427 algae chloroplast clone Sta1-47 prokMSA_id:061662 AJ427428 algae chloroplast clone Sta1-52 prokMSA_id:061664 AJ427430 algae chloroplast clone Sta2-08 prokMSA_id:070301 AJ427431 algae chloroplast clone Sta2-14 prokMSA_id:070315 AJ427432 algae chloroplast clone Sta2-20 prokMSA_id:061663 AJ427433 algae chloroplast clone Sta2-22 prokMSA_id:071411 AJ427435 algae chloroplast clone Sta2-37 prokMSA_id:061659 AJ427436 algae chloroplast clone Sta2-42 prokMSA_id:061660 AJ427438 algae chloroplast clone Sta3-01 prokMSA_id:061657 AJ427443 algae chloroplast clone Sta4-38 prokMSA_id:061654 AJ427444 algae chloroplast clone Sta5-12 prokMSA_id:061650 AJ427445 algae chloroplast clone Sta5-48 prokMSA_id:056887 AJ518707 clone Sai4P3-16 prokMSA_id:034402 AY038432 prasinophycean clone CD5C6 ; chloroplast chloroplast product prokMSA_id:020555 AY038502 mesostigmatophycean clone CD1H7 ; chloroplast chloroplast product prokMSA_id:066964 AY038503 ulvophycean clone CD1H4 ; chloroplast chloroplast product prokMSA_id:055987 AY145636 FL10D01 prokMSA_id:075377 AY153449 eukaryote isolate DGGE gel band C2 ; plastid plastid product prokMSA_id:077175 AY153450 eukaryote isolate DGGE gel band B1-10 ; plastid plastid product prokMSA_id:076606 AY153451 eukaryote isolate DGGE gel band B2-12 ; plastid plastid product prokMSA_id:077090 AY153456 eukaryote isolate DGGE gel band B11 ; plastid plastid product prokMSA_id:075717 AY153457 eukaryote isolate DGGE gel band B13 ; plastid plastid product prokMSA_id:089391 AY304522 phototrophic eukaryote Dpcom72 ; plastid plastid product prokMSA_id:090716 AY304532 phototrophic eukaryote Dpcom83 ; plastid plastid product prokMSA_id:096358 AY394641 phototrophic eukaryote clone N10-8 ; plastid plastid product prokMSA_id:071628 U85144 eukaryote clone ACK-DE32 chloroplast chloroplast prokMSA_id:045531 X03269 Chlamydomonas reinhardtii chloroplast prokMSA_id:067656 Y17632 Closteriopsis acicularis plastid prokMSA_id:003496 Z77495 str. 2-100 C15. 2.21.2.5 CHAROPHYTA-EMBRYOPHYTA_CHLOROPLASTS 215 seqs 2.21.2.5.002 OTU 4 seqs prokMSA_id:034395 AF278750 Coleochaete sieminskiana small subunit ; chloroplast chloroplast product prokMSA_id:086374 AF497784 Coleochaete nitellarum ; chloroplast chloroplast product prokMSA_id:083461 AF497785 Coleochaete pulvinata ; chloroplast chloroplast product prokMSA_id:003556 U24579 Coleochaete orbicularis charophyte alga -- chloroplast. 2.21.2.5.003 OTU 4 seqs prokMSA_id:041814 AF278748 Nitella flexilis small subunit ; chloroplast chloroplast product prokMSA_id:086193 AF497791 Chara strigosa ; chloroplast chloroplast product prokMSA_id:084762 AF497792 Nitellopsis obtusa ; chloroplast chloroplast product prokMSA_id:003540 X75519 Chara sp. stonewort green alga -- chloroplast. 2.21.2.5.004 OTU 1 seq prokMSA_id:003538 X75522 Klebsormidium flaccidum charophyte alga -- chloroplast. 2.21.2.5.005 OTU 1 seq prokMSA_id:003536 U24596 Spirogyra maxima charophyte alga -- chloroplast. 2.21.2.5.006 OTU 1 seq prokMSA_id:003534 U24591 Selaginella apoda fern allies -- chloroplast. 2.21.2.5.010 OTU 124 seqs prokMSA_id:067563 AB042240 Triticum aestivum chloroplast complete genome prokMSA_id:079024 AB086179 Anthoceros formosae chloroplast complete genome prokMSA_id:078765 AB087477 Anthoceros formosae chloroplast complete prokMSA_id:023728 AF152609 Pellia neesiana ; chloroplast chloroplast product prokMSA_id:018059 AF176637 Plastid transformation vector pMSK49 plastid targeting region prokMSA_id:034845 AF244549 Adiantum pedatum ; chloroplast chloroplast product prokMSA_id:042014 AF244550 Calypogeia muelleriana ; chloroplast chloroplast product prokMSA_id:039969 AF244551 Cycas revoluta ; chloroplast chloroplast product prokMSA_id:048948 AF244554 Ginkgo biloba ; chloroplast chloroplast product prokMSA_id:036243 AF244555 Gnetum leyboldii ; chloroplast chloroplast product prokMSA_id:074494 AF244556 Huperzia lucidula ; chloroplast chloroplast product prokMSA_id:036543 AF244557 Magnolia x soulangeana ; chloroplast chloroplast product prokMSA_id:032016 AF244558 Megaceros aenigmaticus ; chloroplast chloroplast product prokMSA_id:052573 AF244560 Nymphaea tuberosa ; chloroplast chloroplast product prokMSA_id:041462 AF244561 Phaeoceros laevis ; chloroplast chloroplast product prokMSA_id:040521 AF244563 Polytrichum commune ; chloroplast chloroplast product prokMSA_id:068899 AF372517 Medicago sativa ; and tRNA-Ile and tRNA-Ala genes complete ; chloroplast genes chloroplast products prokMSA_id:036980 AF372579 Lespedeza cuneata ; chloroplast chloroplast product prokMSA_id:039850 AF419246 Medicago sativa prokMSA_id:062969 AF526941 angiosperm clone T5-20 ; chloroplast chloroplast product prokMSA_id:041108 AJ007447 Phaseolus vulgaris clone 8206 prokMSA_id:023026 AJ007448 Phaseolus vulgaris clone 8360 prokMSA_id:053526 AJ007728 Orobanche minor chloroplast trnVGAC trnIGAU pseudogene trnAUGC pseudogene and 23S prokMSA_id:052836 AJ239003 Triticum aestivum L. chloroplast prokMSA_id:047517 AJ252712 Solanum tuberosum leukoplast clone RC-III-13 prokMSA_id:069037 AJ271079 Oenothera elata subsp. hookeri chloroplast plastome I complete prokMSA_id:072159 AJ278623 Cuscuta gronovii chloroplast tRNA-ValGAC and prokMSA_id:069292 AJ278624 Cuscuta odorata chloroplast tRNA-ValGAC and prokMSA_id:071605 AJ278625 Cuscuta subinclusa chloroplast tRNA-ValGAC and prokMSA_id:074351 AJ278626 Cuscuta reflexa chloroplast tRNA-ValGAC and prokMSA_id:060254 AJ316582 Atropa belladonna complete chloroplast genome strain Ab5pkan prokMSA_id:053001 AJ400848 Spinacia oleracea complete chloroplast genome prokMSA_id:018362 AJ401353 Cuscuta campestris chloroplast prokMSA_id:035330 AJ401354 Cuscuta europaea chloroplast prokMSA_id:021502 AJ401355 Cuscuta platyloba chloroplast prokMSA_id:020187 AJ409116 Putative agent of rhinosporidiosis prokMSA_id:090638 AJ428413 Calycanthus fertilis var. ferax complete chloroplast genome prokMSA_id:049664 AJ428862 cyanobacterium DBD2002 prokMSA_id:064370 AJ440719 Putative agent of rhinosporidiosis prokMSA_id:093515 AJ506156 Amborella trichopoda chloroplast genomic complete prokMSA_id:082773 AJ555400 Triticum turgidum subsp. dicoccum chloroplast prokMSA_id:085126 AJ555401 Aegilops speltoides chloroplast prokMSA_id:086346 AJ555402 Aegilops tauschii chloroplast prokMSA_id:069692 AP000423 Arabidopsis thaliana chloroplast genomic complete strain:Columbia prokMSA_id:053867 AP002983 Lotus japonicus chloroplast complete genome prokMSA_id:074055 AP004638 Psilotum nudum chloroplast complete genome prokMSA_id:094107 AP005672 Physcomitrella patens subsp. patens chloroplast complete genome prokMSA_id:064444 AY102879 embryophyte clone BCM1-32B ; plastid plastid product prokMSA_id:069239 AY145639 eukaryote FL10D12 ; plastid plastid product prokMSA_id:069364 AY145653 eukaryote FL12D05 ; plastid plastid product prokMSA_id:077656 AY171306 clone s41 prokMSA_id:077576 AY171318 clone s47 prokMSA_id:085973 AY178864 Adiantum capillus-veneris chloroplast complete genome prokMSA_id:089527 AY191350 marine eukaryote isolate ODP1176A22X_6_B ; plastid plastid product prokMSA_id:084627 AY216521 Lycopersicon esculentum tRNA-Val complete ; complete ; and tRNA-Ile and tRNA-Ala genes complete ; chloroplast genes chloroplast products prokMSA_id:083696 AY228468 Pinus Koraiensis chloroplast complete genome prokMSA_id:003516 D17510 Pinus thunbergiana Japanese black pine; green pine -- prokMSA_id:003552 L37580 Ricinis communis castor bean -- chloroplast. prokMSA_id:003529 M37430 Pisum sativum pea; garden pea -- chloroplast. prokMSA_id:003501 M81884 Epifagus virginiana beechdrops -- chloroplast. prokMSA_id:003532 M82900 Nicotiana plumbaginifolia str. wild curled-leaved tobacco; prokMSA_id:073572 NC_000932 Arabidopsis thaliana chloroplast complete genome prokMSA_id:046050 NC_001319 Marchantia polymorpha chloroplast complete genome prokMSA_id:046607 NC_001320 Oryza sativa japonica cultivar-group plastid complete genome prokMSA_id:035217 NC_001568 Epifagus virginiana chloroplast complete genome prokMSA_id:051212 NC_001631 Pinus thunbergii chloroplast complete genome prokMSA_id:045714 NC_001666 Zea mays plastid complete genome prokMSA_id:054220 NC_001879 Nicotiana tabacum plastid complete genome prokMSA_id:046408 NC_002202 Spinacia oleracea plastid complete genome prokMSA_id:053024 NC_002693 Oenothera elata subsp. hookeri plastid complete genome prokMSA_id:059840 NC_002694 Lotus japonicus chloroplast complete genome prokMSA_id:059839 NC_002762 Triticum aestivum chloroplast complete genome prokMSA_id:050506 NC_003386 Psilotum nudum chloroplast complete genome prokMSA_id:079471 NC_004543 Anthoceros formosae chloroplast complete genome prokMSA_id:079402 NC_004561 Atropa belladonna chloroplast complete genome prokMSA_id:086566 NC_004677 Pinus koraiensis chloroplast complete genome prokMSA_id:083332 NC_004766 Adiantum capillus-veneris chloroplast complete genome prokMSA_id:088688 NC_004993 Calycanthus fertilis var. ferax chloroplast complete genome prokMSA_id:094074 NC_005086 Amborella trichopoda chloroplast complete genome prokMSA_id:093255 NC_005087 Physcomitrella patens subsp. patens chloroplast complete genome prokMSA_id:003539 NONE Brassica napus forage rape; kale -- chloroplast. prokMSA_id:003521 U03555 Alnus incana hazel alder -- chloroplast. prokMSA_id:003553 U12809 Nicotiana tabacum common tobacco; tobacco; American tobacco -- prokMSA_id:003503 U12810 Nicotiana tabacum common tobacco; tobacco; American tobacco -- prokMSA_id:003519 U12811 Nicotiana tabacum common tobacco; tobacco; American tobacco -- prokMSA_id:003523 U12812 Nicotiana tabacum common tobacco; tobacco; American tobacco -- prokMSA_id:003502 U12813 Nicotiana tabacum common tobacco; tobacco; American tobacco -- prokMSA_id:003533 U12814 Nicotiana tabacum common tobacco; tobacco; American tobacco -- prokMSA_id:003543 U12815 Nicotiana tabacum common tobacco; tobacco; American tobacco -- prokMSA_id:003506 U24580 Angiopteris evecta eusporangiate fern -- chloroplast. prokMSA_id:003535 U24581 Botrychium biternatum eusporangiate fern -- chloroplast. prokMSA_id:003511 U24582 Cibotium glaucum Hawaiian tree fern -- chloroplast. prokMSA_id:003512 U24583 Doodia maxima leptosporangiate fern -- chloroplast. prokMSA_id:003530 U24584 Ephedra trifurca gymnosperm -- chloroplast. prokMSA_id:003545 U24585 Isoetes melanopoda fern allies -- chloroplast. prokMSA_id:003526 U24587 Lycopodium digitatum fern allies -- chloroplast. prokMSA_id:003550 U24588 Lygodium japonicum leptosporangiate fern -- chloroplast. prokMSA_id:003549 U24589 Ophioglossum engelmannii eusporangiate fern -- chloroplast. prokMSA_id:003518 U24590 Psilotum nudum fern allies -- chloroplast. prokMSA_id:003517 U24592 Sphagnum palustre bryophyte -- chloroplast. prokMSA_id:003527 U24593 Equisetum arvense fern allies -- chloroplast. prokMSA_id:003554 U24594 Osmunda cinnamomea str. var. fokiensis cinnamon fern -- prokMSA_id:003525 U24595 Tmesipteris oblanceolata fern allies -- chloroplast. prokMSA_id:045563 U46209 Alnus glutinosa chloroplast encoding chloroplast prokMSA_id:048267 U76911 Carica papaya chloroplast chloroplast prokMSA_id:003514 V00165 Nicotiana tabacum common tobacco; tobacco; American tobacco -- prokMSA_id:003531 X04465 Marchantia polymorpha liverwort -- chloroplast. prokMSA_id:003515 X06428 Glycine max soy bean -- chloroplast. prokMSA_id:003541 X07675 Glycine max str. Maple arrow soy bean -- chloroplast. prokMSA_id:003505 X15901 Oryza sativa str. cv. Nipponbare rice -- chloroplast. prokMSA_id:003504 X51598 Pisum sativum str. cr. Progress No.9 pea; garden pea -- prokMSA_id:033995 X55033 P.sativum chloroplast of the single operon prokMSA_id:003544 X58864 Conopholis americana flowering plant -- chloroplast. prokMSA_id:003542 X70938 Nicotiana plumbaginifolia str. wild curled-leaved tobacco; prokMSA_id:003559 X72584 Cuscuta reflexa dodder plant -- chloroplast. prokMSA_id:003546 X73670 Daucus carota carrot -- chloroplast. prokMSA_id:003510 X86563 Zea mays maize; corn; Indian corn -- chloroplast. prokMSA_id:003524 X86563 Zea mays maize; corn; Indian corn -- chloroplast. prokMSA_id:051755 X95278 A.glutinosa chloroplast prokMSA_id:037640 Y10178 A.cepa chloroplast prokMSA_id:069031 Y18934 Solanum nigrum chloroplast tRNA-Ala tRNA-Ile tRNA-Val rps12 rps7 ndhB genes prokMSA_id:003548 Z00028 Zea mays maize; corn; Indian corn -- chloroplast. prokMSA_id:003551 Z00028 Zea mays maize; corn; Indian corn -- chloroplast. prokMSA_id:046790 Z00044 Nicotiana tabacum chloroplast genome 2.21.2.5.011 OTU 2 seqs prokMSA_id:019534 AF445656 eukaryote clone SM1B08 ; plastid plastid product prokMSA_id:003509 U24586 Juniperus virginiana gymnosperm -- chloroplast. 2.21.2.5.012 OTU 1 seq prokMSA_id:003508 NONE Closterium ehrenbergii str. NIES-228 green alga -- chloroplast. 2.21.2.5.013 OTU 1 seq prokMSA_id:021878 AF355049 delta Arctic96BD-15 2.21.2.5.014 OTU 1 seq prokMSA_id:029047 U47845 Cytinus ruber chloroplast chloroplast 2.21.2.5.015 OTU 1 seq prokMSA_id:035074 U67743 Cynomorium coccineum chloroplast 2.21.2.5.016 OTU 1 seq prokMSA_id:045967 U67740 Bdallophyton americanum chloroplast 2.21.2.5.017 OTU 1 seq prokMSA_id:053288 AJ007508 Gnetum gnemon chloroplast psaC ccsA 4.5S 5S 23S and tRNA Leu Asn Arg Ala and Ile genes 2.21.2.5.018 OTU 1 seq prokMSA_id:066493 AY100596 clone cvf120039 2.21.2.5.019 OTU 1 seq prokMSA_id:066495 AY100594 clone cvf116009 2.21.2.5.020 OTU 1 seq prokMSA_id:068830 X90641 M.squamata tRNA-Ile & tRNA-Ala genes 2.21.2.5.021 OTU 1 seq prokMSA_id:072055 U67742 Mitrastema yamamotoi chloroplast 2.21.2.5.022 OTU 1 seq prokMSA_id:083538 AF497789 Zygnema sp. KA-2002 ; chloroplast chloroplast product 2.21.2.5.023 OTU 1 seq prokMSA_id:083682 AF497790 Chlorokybus atmophyticus ; chloroplast chloroplast product 2.21.2.5.024 OTU 1 seq prokMSA_id:083946 AF497788 Chaetosphaeridium globosum ; chloroplast chloroplast product 2.21.2.5.999 poor quality 65 seqs prokMSA_id:075171 AB075075 clone:KCR3 prokMSA_id:075994 AB075082 clone:KCR11 prokMSA_id:076169 AB075086 clone:KCR15 prokMSA_id:032958 AF038624 Flindersia australis chloroplast chloroplast prokMSA_id:044270 AF038625 Flindersia pimenteliana chloroplast chloroplast prokMSA_id:041047 AF038626 Flindersia schottiana chloroplast chloroplast prokMSA_id:031905 AF038627 Flindersia xanthoxyla chloroplast chloroplast prokMSA_id:072492 AF047637 TRB18 prokMSA_id:018695 AF061065 Plastid transformation vector pGS31A ; aminoglycoside 3'-adenyltransferase aadA complete cds prokMSA_id:033967 AF125173 Picocystis salinarum chloroplast chloroplast 5' end and prokMSA_id:026398 AF128638 soil C051 prokMSA_id:054463 AF141145 Vigna unguiculata clone TV72NBS2 ; chloroplast chloroplast product prokMSA_id:019584 AF141146 Vigna unguiculata clone TV72NBS3 ; chloroplast chloroplast product prokMSA_id:051078 AF141149 Vigna unguiculata clone TV72NBS4 prokMSA_id:022787 AF141153 Vigna unguiculata clone VU124KNF1-2 ; chloroplast chloroplast product prokMSA_id:074540 AF187307 JIII-04-98 prokMSA_id:071157 AF187308 JIII-05-98 prokMSA_id:024776 AF240477 atmospheric RM1A-2 prokMSA_id:022559 AF263516 Vitis vinifera ; chloroplast chloroplast product prokMSA_id:044856 AF392785 clone TCB1 prokMSA_id:025671 AF392791 clone LED2 prokMSA_id:070469 AF419692 C1_B022 prokMSA_id:026834 AF428473 moss plastid clone moss22 ; chloroplast chloroplast product prokMSA_id:054861 AF428474 moss plastid clone moss23 ; chloroplast chloroplast product prokMSA_id:017252 AF428475 moss plastid clone moss33 ; chloroplast chloroplast product prokMSA_id:022442 AF428476 moss plastid clone moss35 ; chloroplast chloroplast product prokMSA_id:060776 AF491680 prasinophyte clone SFD1-26 ; chloroplast chloroplast product prokMSA_id:067447 AF493288 clone pHS20 prokMSA_id:084266 AF497787 Coleochaete irregularis ; chloroplast chloroplast product prokMSA_id:038785 AH009120 Picocystis salinarum strain SSFB prokMSA_id:023749 AJ232810 clone TRE1 prokMSA_id:044178 AJ252713 Solanum tuberosum leukoplast clone RC-III-19 prokMSA_id:043733 AJ252716 Solanum tuberosum leukoplast clone RC-III-25 prokMSA_id:024759 AJ252720 Potato plant root clone RC-III-44 prokMSA_id:023039 AJ252724 Solanum tuberosum leukoplast clone RC-III-58 prokMSA_id:029042 AJ252727 Solanum tuberosum leukoplast clone RC-III-69 prokMSA_id:049730 AJ252728 Solanum tuberosum leukoplast clone RC-III-70 prokMSA_id:024846 AJ252730 Potato plant root clone RC-III-72 prokMSA_id:027529 AJ252733 Solanum tuberosum leukoplast clone RC-III-80 prokMSA_id:045816 AJ252734 Solanum tuberosum leukoplast clone RC-III-81 prokMSA_id:019084 AJ252735 Solanum tuberosum leukoplast clone RC-III-82 prokMSA_id:048201 AJ308294 clone F99_10b_maize_chloroplast prokMSA_id:050392 AJ419658 Beta vulgaris subsp. vulgaris chloroplast clone R05 prokMSA_id:061666 AJ427434 algae chloroplast clone Sta2-24 prokMSA_id:056089 AJ427437 algae chloroplast clone Sta2-45 prokMSA_id:055612 AJ427439 algae chloroplast clone Sta3-22 prokMSA_id:024694 AJ431195 Zea mays clone 1_42 prokMSA_id:098871 AJ583813 clone DGGE band 34 prokMSA_id:064679 AL749636 AL749636 AN Pinus pinaster cDNA clone AN05A10 similar to mRNA prokMSA_id:041173 AY006582 rumen prokMSA_id:061293 AY043964 embryophyte plastid clone NOW2.115WL ; chloroplast chloroplast product prokMSA_id:061292 AY043965 embryophyte plastid clone SMW4.10WL ; chloroplast chloroplast product prokMSA_id:061291 AY043966 embryophyte plastid clone NOS7.166WL ; chloroplast chloroplast product prokMSA_id:076657 AY168732 angiosperm ; chloroplast chloroplast product prokMSA_id:079395 AY212282 Dendrobium hybrid cultivar isolate ps122 ; chloroplast chloroplast product prokMSA_id:003528 L37578 Adriana glabrata euphorbialal dicotyledon plant -- chloroplast. prokMSA_id:003520 L37579 Euphorbia pulcherrima poinsettia -- chloroplast. prokMSA_id:003513 M16874 Pisum sativum str. Rosakrona pea; garden pea -- chloroplast. prokMSA_id:003547 NONE Polytrichum commune moss -- chloroplast. prokMSA_id:003507 NONE Sphagnum compactum bryophyte -- chloroplast. prokMSA_id:003555 NONE Thuidium delicatulum mat-forming plant -- chloroplast. prokMSA_id:003522 U68661 clone P32. prokMSA_id:003537 Z77381 str. 1-140 C42. prokMSA_id:003557 Z77392 str. 1-420 C10. prokMSA_id:003558 Z77430 str. 1-420 C63. 2.21.3 OCTOPUS_SPRING_CLONES_GROUP 4 seqs 2.21.3.999 poor quality 4 seqs prokMSA_id:003562 L04710 Octopus Spring microbial mat from Yellowstone NP clone J. prokMSA_id:003561 M62776 Octopus Spring microbial mat from Yellowstone NP clone B. prokMSA_id:071680 U88530 cyanobacterium prokMSA_id:003560 X52544 Octopus Spring microbial mat from Yellowstone NP clone A. 2.21.4 GLOEOBACTER_GROUP 9 seqs 2.21.4.001 OTU 5 seqs prokMSA_id:003564 AF132790 Gloeobacter violaceus PCC 7421. prokMSA_id:003565 AF132791 Gloeobacter PCC8105 PCC 8105. prokMSA_id:094836 AP006573 Gloeobacter violaceus PCC 7421 complete genome section 6/16 prokMSA_id:097840 NC_005125 Gloeobacter violaceus complete genome prokMSA_id:003563 NONE Gloeobacter violaceus PCC 7421. 2.21.4.002 OTU 1 seq prokMSA_id:019077 AJ390438 soil PBS-II-1 2.21.4.003 OTU 1 seq prokMSA_id:055619 AF523901 clone RCP2-5 2.21.4.004 OTU 1 seq prokMSA_id:090453 AY328724 DSSD25 2.21.4.999 poor quality 1 seq prokMSA_id:036594 AJ005996 clone TBS10 2.21.5 ENVIRONMENTAL_CLONE_TM7_GROUP 16 seqs 2.21.5.001 OTU 1 seq prokMSA_id:003568 U68600 clone M13. 2.21.5.002 OTU 1 seq prokMSA_id:003566 X97111 clone TM7. 2.21.5.003 OTU 1 seq prokMSA_id:016748 AF269005 TM7LH15 2.21.5.004 OTU 3 seqs prokMSA_id:046000 AF269010 NoosaAW67 prokMSA_id:049063 AF269012 NoosaAW56 prokMSA_id:017120 AF269018 NoosaAW13 2.21.5.005 OTU 4 seqs prokMSA_id:044180 AF337874 gold mine D51 prokMSA_id:040620 AF337876 gold mine D20 prokMSA_id:021216 AF337880 gold mine D25 prokMSA_id:085251 AY274145 clone D140 2.21.5.006 OTU 1 seq prokMSA_id:037526 AF268994 GC1 2.21.5.007 OTU 1 seq prokMSA_id:091869 AY345514 clone W4A-A03 2.21.5.999 poor quality 4 seqs prokMSA_id:036819 AJ225357 species ; clone 5 prokMSA_id:046729 AY037728 earthworm cast clone C124 prokMSA_id:003567 X84626 clone SBR2096. prokMSA_id:003569 Z69283 clone JN18e. 2.21.6 ENVIRONMENTAL_CLONE_A32L 2 seqs 2.21.6.001 OTU 1 seq prokMSA_id:088230 AY328748 DSSD50 2.21.6.999 poor quality 1 seq prokMSA_id:003570 X91455 clone A32L. 2.22 ENVIRONMENTAL_CLONE_1611 1 seq 2.22.999 poor quality 1 seq prokMSA_id:003571 X89306 clone 1611. 2.23 ENVIRONMENTAL_CLONE_PAD1_GROUP 3 seqs 2.23.999 poor quality 3 seqs prokMSA_id:003572 D26188 soil from paddy field clone PAD1. prokMSA_id:003573 D26195 soil from paddy field clone PAD8. prokMSA_id:003574 D26201 soil from paddy field clone PAD14. 2.24 ENVIRONMENTAL_CLONE_PAD39 1 seq 2.24.999 poor quality 1 seq prokMSA_id:003575 D26226 soil from paddy field clone PAD39. 2.25 FIBROBACTER_AND_ACIDOBACTERIUM 952 seqs 2.25.1 FIBROBACTER_SUBDIVISION 160 seqs 2.25.1.1 FIBROBACTER_GROUP 37 seqs 2.25.1.1.001 OTU 1 seq prokMSA_id:003591 L35547 Fibrobacter sp. 2.25.1.1.006 OTU 7 seqs prokMSA_id:090225 AB113670 clone:AAB33 prokMSA_id:088582 AB113694 clone:OAB7 prokMSA_id:003577 AF018454 clone 12-5. prokMSA_id:063459 AJ496186 Fibrobacter succinogenes strain HM2 prokMSA_id:089180 AY311716 clone YRCE03 prokMSA_id:088522 AY315348 rumen clone JRCK13 prokMSA_id:003581 L35548 Fibrobacter sp. 2.25.1.1.999 poor quality 29 seqs prokMSA_id:067291 AF495397 clone F10.34 prokMSA_id:052519 AJ232823 clone LBS23 prokMSA_id:026857 AY006810 rumen prokMSA_id:042571 AY006814 rumen prokMSA_id:035104 AY006822 rumen prokMSA_id:023412 AY006840 rumen prokMSA_id:024826 AY037635 soil clone S124 prokMSA_id:088583 AY311623 clone YRCB33 prokMSA_id:089605 AY311635 clone YRCB51 prokMSA_id:090714 AY311706 clone YRCD48 prokMSA_id:088789 AY315235 rumen clone JRCH11 prokMSA_id:090519 AY315241 rumen clone JRCH20 prokMSA_id:090564 AY315287 rumen clone JRCI47 prokMSA_id:089624 AY315379 rumen clone JRCK57 prokMSA_id:003592 M62682 Fibrobacter succinogenes str. REH9-1 ATCC 43857. prokMSA_id:003584 M62683 Fibrobacter succinogenes str. A3C ATCC 51219. prokMSA_id:003587 M62684 Fibrobacter succinogenes str. B1 ATCC 51214. prokMSA_id:003579 M62685 Fibrobacter succinogenes str. BL2 ATCC 51215. prokMSA_id:003590 M62686 Fibrobacter intestinalis str. C1a. prokMSA_id:003589 M62687 Fibrobacter intestinalis str. DR7 ATCC 43855. prokMSA_id:003585 M62688 Fibrobacter succinogenes str. GC5. prokMSA_id:003586 M62689 Fibrobacter succinogenes subsp. elongatus str. HM2 ATCC 43856 . prokMSA_id:003582 M62690 Fibrobacter intestinalis str. JG1. prokMSA_id:003580 M62691 Fibrobacter intestinalis str. LH1. prokMSA_id:003583 M62692 Fibrobacter succinogenes str. MB4. prokMSA_id:003588 M62693 Fibrobacter succinogenes str. MC1 ATCC 51218. prokMSA_id:003593 M62694 Fibrobacter succinogenes str. MM4. prokMSA_id:003578 M62695 Fibrobacter intestinalis str. NR9 ATCC 43854 . prokMSA_id:003576 M62696 Fibrobacter succinogenes subsp. succinogenes str. S85 ATCC 19169 2.25.1.2 ENVIRONMENTAL_CLONE_OCS307_GROUP 123 seqs 2.25.1.2.001 OTU 5 seqs prokMSA_id:060631 AF406544 Fibrobacter/Acidobacteria group clone AEGEAN_225 prokMSA_id:068979 AY033318 MB13C05 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:003654 U34043 clone SAR 406. prokMSA_id:003657 U41450 clone OCS 307. prokMSA_id:029916 U64575 NH16-12 2.25.1.2.002 OTU 1 seq prokMSA_id:003655 U64576 clone NH16-16. 2.25.1.2.003 OTU 3 seqs prokMSA_id:029818 AF355046 delta Arctic95A-2 prokMSA_id:048719 AF469391 clone 33-PA26B99 prokMSA_id:003653 U86494 clone pB1-121. 2.25.1.2.004 OTU 1 seq prokMSA_id:003650 AF050621 clone WCHA2-01. 2.25.1.2.006 OTU 1 seq prokMSA_id:003647 AF172886 clone BOL-05. 2.25.1.2.007 OTU 3 seqs prokMSA_id:003648 AF172881 clone BMS1-76. prokMSA_id:003645 AF172889 clone BOL-15. prokMSA_id:003637 AF172910 clone CA1-114. 2.25.1.2.008 OTU 4 seqs prokMSA_id:003646 AF172887 clone BOL-06. prokMSA_id:003644 AF172892 clone BOL-27. prokMSA_id:003643 AF172893 clone BOL-116. prokMSA_id:003641 AF172898 clone BOL-162. 2.25.1.2.009 OTU 1 seq prokMSA_id:003642 AF172895 clone BOL-126. 2.25.1.2.010 OTU 1 seq prokMSA_id:003640 AF172905 clone CA1-03. 2.25.1.2.011 OTU 5 seqs prokMSA_id:003639 AF172908 clone CA1-17. prokMSA_id:003638 AF172909 clone CA1-22. prokMSA_id:003636 AF172911 clone CA1-115. prokMSA_id:003635 AF172913 clone CA1-191. prokMSA_id:018930 AF423183 Toluene-degrading methanogenic consortium Eub 3 2.25.1.2.012 OTU 3 seqs prokMSA_id:003634 AF172914 clone LL-01. prokMSA_id:003632 AF172918 clone LL-20. prokMSA_id:003631 AF172919 clone LL-22. 2.25.1.2.013 OTU 1 seq prokMSA_id:003633 AF172917 clone LL-19. 2.25.1.2.014 OTU 1 seq prokMSA_id:003630 AF050597 clone WCHB1-01. 2.25.1.2.015 OTU 1 seq prokMSA_id:003629 AF172872 clone BMS1-07. 2.25.1.2.016 OTU 1 seq prokMSA_id:003628 AF172878 clone BMS1-28. 2.25.1.2.017 OTU 2 seqs prokMSA_id:003627 AF172879 clone BMS1-37. prokMSA_id:003620 AF172903 clone CA1-01. 2.25.1.2.018 OTU 1 seq prokMSA_id:003626 AF172883 clone BOL-01. 2.25.1.2.019 OTU 5 seqs prokMSA_id:003616 AF172874 clone BMS1-11. prokMSA_id:003625 AF172884 clone BOL-02. prokMSA_id:003611 AF172885 clone BOL-04. prokMSA_id:003606 AF172900 clone BOL-176. prokMSA_id:003599 AF172920 clone LL-27. 2.25.1.2.022 OTU 3 seqs prokMSA_id:003624 AF172891 clone BOL-26. prokMSA_id:003623 AF172894 clone BOL-118. prokMSA_id:003622 AF172901 clone BOL-177. 2.25.1.2.023 OTU 1 seq prokMSA_id:003621 AF172902 clone BOL-195. 2.25.1.2.024 OTU 1 seq prokMSA_id:003619 AF172896 clone BOL-130. 2.25.1.2.025 OTU 1 seq prokMSA_id:003618 AF050595 clone WCHB1-06. 2.25.1.2.027 OTU 12 seqs prokMSA_id:003617 AF172871 clone BMS1-05. prokMSA_id:003649 AF172873 clone BMS1-10. prokMSA_id:003615 AF172875 clone BMS1-12. prokMSA_id:003614 AF172876 clone BMS1-20. prokMSA_id:003613 AF172877 clone BMS1-25. prokMSA_id:003610 AF172888 clone BOL-14. prokMSA_id:003604 AF172906 clone CA1-04. prokMSA_id:003600 AF172916 clone LL-12. prokMSA_id:003598 AF172921 clone LL-31. prokMSA_id:003597 AF172922 clone OP-01. prokMSA_id:003596 AF172923 clone 1A-04. prokMSA_id:003595 AF172924 clone 1A-07. 2.25.1.2.028 OTU 4 seqs prokMSA_id:003612 AF172880 clone BMS1-64. prokMSA_id:003607 AF172899 clone BOL-173. prokMSA_id:003603 AF172907 clone CA1-06. prokMSA_id:003601 AF172915 clone LL-02. 2.25.1.2.029 OTU 1 seq prokMSA_id:003609 AF172890 clone BOL-22. 2.25.1.2.030 OTU 1 seq prokMSA_id:003608 AF172897 clone BOL-134. 2.25.1.2.031 OTU 2 seqs prokMSA_id:003605 AF172904 clone CA1-02. prokMSA_id:003602 AF172912 clone CA1-183. 2.25.1.2.032 OTU 1 seq prokMSA_id:003594 AF050596 clone WCHB1-15. 2.25.1.2.033 OTU 5 seqs prokMSA_id:028340 AF224775 clone Car53c prokMSA_id:046975 AF224776 clone Car101fb prokMSA_id:028509 AF224814 clone Car88rb prokMSA_id:042705 AF224847 clone Car118rc prokMSA_id:018724 AF224857 clone Car129rc 2.25.1.2.034 OTU 6 seqs prokMSA_id:020820 AF285613 Car168 prokMSA_id:035861 AF355047 delta Arctic96B-7 prokMSA_id:042960 AF440700 marine ARCT1-7 prokMSA_id:064952 AY095796 Fibrobacter group CS4K-102 prokMSA_id:064945 AY095797 Fibrobacter group CS4K-103 prokMSA_id:080957 AY220706 delta clone WCPAP2 2.25.1.2.035 OTU 2 seqs prokMSA_id:022653 AF285616 delta clone Car176f prokMSA_id:064968 AY095633 Fibrobacter group OS3.5K-21 2.25.1.2.036 OTU 1 seq prokMSA_id:022758 AF424321 MERTZ_21CM_187 2.25.1.2.038 OTU 1 seq prokMSA_id:023348 AF355043 delta Arctic95A-3 2.25.1.2.040 OTU 1 seq prokMSA_id:031932 U86460 marine pN1-42 2.25.1.2.042 OTU 3 seqs prokMSA_id:030711 AF224789 clone Car139fb prokMSA_id:038224 AF224815 clone Car89fb prokMSA_id:091672 AY344400 clone K2-30-7 2.25.1.2.044 OTU 5 seqs prokMSA_id:030415 AF424301 MERTZ_2CM_63 prokMSA_id:044566 AF424309 MERTZ_2CM_321 prokMSA_id:042369 AF424313 MERTZ_2CM_351 prokMSA_id:023031 AF424332 MERTZ_21CM_158 prokMSA_id:059831 AY133356 clone OB3_30 2.25.1.2.045 OTU 1 seq prokMSA_id:049952 AF424320 MERTZ_21CM_111 2.25.1.2.046 OTU 1 seq prokMSA_id:064895 AY095885 Fibrobacter group pT-426 2.25.1.2.047 OTU 2 seqs prokMSA_id:075343 AY164336 clone ALIB-11 prokMSA_id:074962 AY164390 clone BLIB-95 2.25.1.2.048 OTU 1 seq prokMSA_id:075080 AY164388 clone BLIB-90 2.25.1.2.049 OTU 1 seq prokMSA_id:075744 AY164454 clone ULIB-91 2.25.1.2.050 OTU 1 seq prokMSA_id:079412 AF382142 clone ZA3648c 2.25.1.2.051 OTU 1 seq prokMSA_id:079575 AF382116 clone ZA3312c 2.25.1.2.052 OTU 1 seq prokMSA_id:093977 AY360504 clone BSB2-217m 2.25.1.2.053 OTU 1 seq prokMSA_id:094234 AY360508 clone BSB3-89m 2.25.1.2.999 poor quality 22 seqs prokMSA_id:003656 AF001653 clone OCS146. prokMSA_id:069334 AF172927 BMS_6 prokMSA_id:024639 AF223285 actinobacterium B2M43 prokMSA_id:048702 AF224785 clone Car134rb prokMSA_id:056027 AF224822 clone Car97fb prokMSA_id:023499 AF257296 marine DHB-43 prokMSA_id:033842 AF355048 delta Arctic96A-24 prokMSA_id:047964 AF429193 clone CR99-2-07 prokMSA_id:061157 AF530101 isolate MGP DGGE Band 10B prokMSA_id:074072 AH000029 sp. amplified from marine plankton clone NH49-10A 5' end prokMSA_id:046564 AY038456 clone CD3D12 prokMSA_id:064966 AY095634 Fibrobacter group OS3.5K-22 prokMSA_id:064964 AY095635 Fibrobacter group OS3.5K-23 prokMSA_id:064938 AY095798 SAR406 cluster CS4K-105 prokMSA_id:064935 AY095809 delta CS4K-216 prokMSA_id:065013 AY095840 ARCT2-41 prokMSA_id:065012 AY095843 SAR406 cluster ARCT2-46 prokMSA_id:084319 AY197384 clone B01R013 prokMSA_id:003658 L11953 Pacific Ocean station 16 100m depth clone prokMSA_id:003652 L11988 Pacific Ocean station 49 500m depth clone prokMSA_id:070258 L11989 sp. amplified from marine plankton clone NH49-10B prokMSA_id:003651 X84540 str. SBR1114. 2.25.2 ENVIRONMENTAL_CLONE_FIE3 1 seq 2.25.2.999 poor quality 1 seq prokMSA_id:003659 D26256 soil from soybean field clone FIE3. 2.25.3 ACIDOBACTERIUM_SUBDIVISION 791 seqs 2.25.3.1 MOUNT_COOT-THA_ENVIRONMENTAL_CLONES_III 200 seqs 2.25.3.1.001 OTU 1 seq prokMSA_id:003685 U81754 clone vadinHB76. 2.25.3.1.002 OTU 1 seq prokMSA_id:003684 AF027004 clone OPB3. 2.25.3.1.003 OTU 1 seq prokMSA_id:003679 AF146230 clone CLEAR-4. 2.25.3.1.004 OTU 1 seq prokMSA_id:003678 AF186410 clone UC26f. 2.25.3.1.005 OTU 4 seqs prokMSA_id:060599 AF407699 clone G10 prokMSA_id:060585 AF407714 clone B11 prokMSA_id:003677 AJ009495 clone SJA-149. prokMSA_id:093069 AY352449 Acidobacteria clone AVC5 2.25.3.1.006 OTU 1 seq prokMSA_id:003671 U62855 clone RB38. 2.25.3.1.008 OTU 1 seq prokMSA_id:003668 AF165269 unnamed organism. 2.25.3.1.009 OTU 1 seq prokMSA_id:003669 AF013561 unnamed organism. 2.25.3.1.010 OTU 1 seq prokMSA_id:003667 AF013515 clone C002. 2.25.3.1.013 OTU 1 seq prokMSA_id:003663 X68466 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.25.3.1.014 OTU 1 seq prokMSA_id:003660 X68468 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.25.3.1.015 OTU 1 seq prokMSA_id:016602 AJ292571 WD205 clone WD205 2.25.3.1.016 OTU 1 seq prokMSA_id:018005 AF165274 Rainforest soil clone HRS-50b 2.25.3.1.018 OTU 11 seqs prokMSA_id:032056 AF145841 Metal-contaminated soil clone K20-46 prokMSA_id:032390 AF145875 Metal-contaminated soil clone K20-91 prokMSA_id:043674 AF445089 clone Tc7 prokMSA_id:069911 AF498724 Ellin342 prokMSA_id:058081 AF498753 Ellin371 prokMSA_id:065923 AF507394 soil clone C086 prokMSA_id:023523 AJ252609 Agricultural soil clone SC-I-5 prokMSA_id:021837 AJ252634 Agricultural soil clone SC-I-40 prokMSA_id:075280 AY154590 earthworm cast clone c234 prokMSA_id:003670 U62849 clone RB29. prokMSA_id:003664 X68467 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.25.3.1.019 OTU 1 seq prokMSA_id:023652 AB034017 rumen 4C0d-3 2.25.3.1.021 OTU 2 seqs prokMSA_id:062412 AF529104 Acidobacterium group clone FTL227 prokMSA_id:032551 AJ252655 Agricultural soil clone SC-I-77 2.25.3.1.022 OTU 3 seqs prokMSA_id:066935 AJ306764 clone SHA-261 prokMSA_id:075670 AJ519376 Holophaga sp. clone JG37-AG-58 prokMSA_id:040287 AY050595 clone GOUTB8 2.25.3.1.024 OTU 5 seqs prokMSA_id:040302 AF234087 #0319-7B4 prokMSA_id:063237 AF523988 clone FW120 prokMSA_id:026745 AJ292582 WD254 clone WD254 prokMSA_id:031570 AJ292589 WD292 clone WD292 prokMSA_id:086692 AY274152 clone D3 2.25.3.1.025 OTU 1 seq prokMSA_id:047645 AJ249099 SHA-18 2.25.3.1.026 OTU 2 seqs prokMSA_id:050491 AF465658 Acidobacterium group YNPRH5A prokMSA_id:066510 AY100577 clone cvf58182 2.25.3.1.027 OTU 1 seq prokMSA_id:060572 AF407730 clone B90 2.25.3.1.028 OTU 1 seq prokMSA_id:060581 AF407719 clone B27 2.25.3.1.029 OTU 1 seq prokMSA_id:060816 AY118153 Acidobacteria/Holophaga group clone Cart-N4 2.25.3.1.030 OTU 1 seq prokMSA_id:063235 AF523989 clone FW3 2.25.3.1.031 OTU 2 seqs prokMSA_id:063238 AF523987 clone FW112 prokMSA_id:094161 AJ581626 Acidobacterium sp. clone KCM-C-150 2.25.3.1.032 OTU 1 seq prokMSA_id:063244 AF523980 clone FW14 2.25.3.1.033 OTU 1 seq prokMSA_id:065526 AY095439 yard-trimming-compost clone S-80 2.25.3.1.034 OTU 1 seq prokMSA_id:065903 AF507417 soil clone C081 2.25.3.1.035 OTU 1 seq prokMSA_id:066471 AY100620 clone cvf63078 2.25.3.1.036 OTU 2 seqs prokMSA_id:066489 AY100601 clone cvf61056 prokMSA_id:066487 AY100604 clone cvf65094 2.25.3.1.037 OTU 1 seq prokMSA_id:014398 AJ000985 DA040 2.25.3.1.038 OTU 1 seq prokMSA_id:075757 AJ519386 Holophaga sp. clone JG37-AG-109 2.25.3.1.039 OTU 1 seq prokMSA_id:076339 AJ519380 Holophaga sp. clone JG37-AG-74 2.25.3.1.040 OTU 1 seq prokMSA_id:076572 AJ519369 Holophaga sp. clone JG37-AG-39 2.25.3.1.041 OTU 1 seq prokMSA_id:078078 AJ514441 clone AS1o2 2.25.3.1.042 OTU 1 seq prokMSA_id:078832 AJ536863 Holophaga sp. clone JG30-KF-C5 2.25.3.1.043 OTU 1 seq prokMSA_id:079283 AB099990 sequences clone: IheB3-42 2.25.3.1.044 OTU 1 seq prokMSA_id:083062 AY274126 clone D116 2.25.3.1.045 OTU 1 seq prokMSA_id:089254 AJ577305 clone 35 2.25.3.1.046 OTU 1 seq prokMSA_id:093456 AJ581625 Acidobacterium sp. clone KCM-C-120 2.25.3.1.047 OTU 1 seq prokMSA_id:094416 AJ583208 clone S15D-MN48 2.25.3.1.999 poor quality 136 seqs prokMSA_id:076129 AB075068 clone:KCRS13 prokMSA_id:075504 AB075108 clone:KSRS9 prokMSA_id:039329 AF016744 soil clone S-33 prokMSA_id:044720 AF016759 soil clone S-49 prokMSA_id:017847 AF078351 Grassland soil clone sl1_214 prokMSA_id:034026 AF078358 Grassland soil clone sl1_221 prokMSA_id:033131 AF078442 Grassland soil clone sl3_811 prokMSA_id:034803 AF128677 soil S013 prokMSA_id:021825 AF128696 soil S097 prokMSA_id:018963 AF128699 soil S0148 prokMSA_id:034676 AF128715 soil C0156 prokMSA_id:022190 AF145808 Metal-contaminated soil clone K20-04 prokMSA_id:052513 AF165270 Rainforest soil clone HRS-46a prokMSA_id:047482 AF165273 Rainforest soil clone HRS-50 prokMSA_id:049827 AF186428 sponge symbiont PAUC27 prokMSA_id:016814 AF186430 sponge symbiont PAUC33 prokMSA_id:039821 AF186431 sponge symbiont PAUC39 prokMSA_id:032141 AF186444 sponge symbiont PAWS55 prokMSA_id:052758 AF186445 sponge symbiont PAWS56 prokMSA_id:025541 AF186448 sponge symbiont PAWS61 prokMSA_id:016902 AF186455 sponge symbiont PAWS71 prokMSA_id:017595 AF186459 sponge symbiont PAWS76 prokMSA_id:051462 AF234067 #0319-6A9 prokMSA_id:031410 AF234075 #0319-6I22 prokMSA_id:074672 AF234114 #0319-8P10 prokMSA_id:029880 AF234149 #0319-7G22 prokMSA_id:046756 AF234155 #0319-7J7 prokMSA_id:053255 AF315412 temperate forest soil C6013 prokMSA_id:023982 AF315414 temperate forest soil C6015 prokMSA_id:033122 AF315422 temperate forest soil C6058 prokMSA_id:021387 AF332340 clone C26-15 prokMSA_id:039033 AF392717 clone P2B10 prokMSA_id:023847 AF392718 clone CRC1 prokMSA_id:031381 AF428592 clone CRD99-14 prokMSA_id:043976 AF428726 clone CRP99-72 prokMSA_id:047065 AF428781 clone CR98-5-51 prokMSA_id:038320 AF428986 clone CR99-35-28 prokMSA_id:050116 AF429026 clone CR99-35-68 prokMSA_id:075914 AF431405 Acidobacterium group clone N11.100WL prokMSA_id:076478 AF431406 Acidobacterium group clone N11.111WL prokMSA_id:075640 AF431407 Acidobacterium group clone N11.113WL prokMSA_id:075111 AF431411 Acidobacterium group clone N12.11WL prokMSA_id:076231 AF431430 Acidobacterium group clone S22.19WL prokMSA_id:077039 AF431434 Acidobacterium group clone N26.128SM prokMSA_id:075655 AF431435 Acidobacterium group clone N26.137SM prokMSA_id:076551 AF431437 Acidobacterium group clone N27.113SM prokMSA_id:077018 AF431439 Acidobacterium group clone C31.10SM prokMSA_id:075786 AF431444 Acidobacterium group clone C31.51SM prokMSA_id:075745 AF431447 Acidobacterium group clone C31.61SM prokMSA_id:076429 AF431448 Acidobacterium group clone C31.65SM prokMSA_id:075285 AF431449 Acidobacterium group clone C31.66SM prokMSA_id:075693 AF431451 Acidobacterium group clone C32.32SM prokMSA_id:076522 AF431454 Acidobacterium group clone C32.45SM prokMSA_id:075254 AF431455 Acidobacterium group clone C32.47SM prokMSA_id:076824 AF431460 Acidobacterium group clone S36.25SM prokMSA_id:076868 AF431468 Acidobacterium group clone N41.119PG prokMSA_id:075101 AF431471 Acidobacterium group clone N42.10PG prokMSA_id:075815 AF431484 Acidobacterium group clone C46.50PG prokMSA_id:076728 AF431487 Acidobacterium group clone C46.61PG prokMSA_id:075195 AF431495 Acidobacterium group clone C47.07PG prokMSA_id:075599 AF431499 Acidobacterium group clone C47.28PG prokMSA_id:076280 AF431502 Acidobacterium group clone C47.36PG prokMSA_id:075230 AF431511 Acidobacterium group clone S51.37PG prokMSA_id:074974 AF431513 Acidobacterium group clone S52.19PG prokMSA_id:074877 AF432728 clone S22.18WL prokMSA_id:074203 AF493841 clone 2 prokMSA_id:072401 AF493849 clone 10 prokMSA_id:065817 AF507515 soil clone S0149 prokMSA_id:065785 AF507587 soil clone C133 prokMSA_id:055448 AF507588 soil clone C135 prokMSA_id:065782 AF507591 soil clone C140 prokMSA_id:065735 AF507645 soil clone C1212 prokMSA_id:020086 AJ231069 clone 26 prokMSA_id:030032 AJ233579 clone WR166 prokMSA_id:042248 AJ233583 clone WR195 prokMSA_id:026480 AJ244315 Riz105 prokMSA_id:026112 AJ244332 Riz1035 prokMSA_id:034553 AJ297619 clone C44K24 prokMSA_id:071606 AJ297620 clone C44K26 prokMSA_id:060162 AJ347047 clone TK66 prokMSA_id:045655 AJ400562 clone G4-K15 prokMSA_id:044338 AJ421904 clone Alt9-K74 prokMSA_id:077743 AJ459906 Acidobacteriaceae clone BED 6 DGGE ME9 prokMSA_id:073866 AJ518191 clone Mul2P1-19 prokMSA_id:055327 AJ518323 clone Neu2P1-52 prokMSA_id:057164 AJ518358 clone Neu4P1-15 prokMSA_id:057125 AJ518408 clone Neu4P2-86 prokMSA_id:057079 AJ518464 clone Neu4P3-86 prokMSA_id:057024 AJ518536 clone Qui2P3-71 prokMSA_id:057002 AJ518567 clone Qui4P2-19 prokMSA_id:056857 AJ518747 clone Sai4P3-78 prokMSA_id:056855 AJ518750 clone Sai4P3-81 prokMSA_id:037465 AY037569 soil clone S022 prokMSA_id:061512 AY043709 Acidobacterium group clone NOW2.66WL prokMSA_id:061508 AY043712 Acidobacterium group clone NOS7.122WL prokMSA_id:061413 AY043824 Acidobacterium group clone NMW3.205WL prokMSA_id:061398 AY043840 Acidobacterium group clone SMS9.110WL prokMSA_id:056318 AY043849 Acidobacterium group clone SMS9.71WL prokMSA_id:061389 AY043852 Acidobacterium group clone SMS9.90WL prokMSA_id:018088 AY072248 Acidobacterium group C6024 prokMSA_id:065543 AY095421 yard-trimming-compost clone S-56 prokMSA_id:077124 AY174198 Acidobacteriales clone WS079 prokMSA_id:076862 AY174209 Acidobacteriales clone WS108 prokMSA_id:079108 AY180081 symbiont of Aplysina cavernicola isolate DGGE gel band 6 prokMSA_id:079348 AY180089 symbiont of Aplysina cavernicola isolate DGGE gel band 14 prokMSA_id:079490 AY180090 symbiont of Aplysina cavernicola isolate DGGE gel band 15 prokMSA_id:079148 AY180091 symbiont of Aplysina cavernicola isolate DGGE gel band 16 prokMSA_id:080773 AY192203 Acidobacteria clone W1-12A prokMSA_id:084056 AY214802 Acidobacteria clone BB-2-F9R prokMSA_id:083213 AY214817 Acidobacteria clone BB-2-E10R prokMSA_id:083083 AY214848 Acidobacteria clone BB-2-E4F prokMSA_id:083029 AY242643 soil clone Tc124- G12 prokMSA_id:086648 AY242644 soil clone TcA19 prokMSA_id:088928 AY289357 soil clone DS-314 prokMSA_id:091709 AY330245 Acidobacteria clone g6-B11 prokMSA_id:096734 AY391660 soil clone M44 prokMSA_id:098110 AY391707 soil clone M91 prokMSA_id:096277 AY395095 Acidobacteria clone A17R prokMSA_id:095270 AY395122 clone C15R prokMSA_id:096414 AY395124 Acidobacteria clone C18R prokMSA_id:097589 AY395183 clone I07K prokMSA_id:096019 AY395197 clone Kolm02 prokMSA_id:098653 AY395218 clone O12R prokMSA_id:003662 D26203 soil from paddy field clone PAD16. prokMSA_id:003683 D26270 soil from soybean field clone FIE20. prokMSA_id:003665 U68597 clone M10. prokMSA_id:003680 U68605 clone M18. prokMSA_id:003681 U68632 clone M56. prokMSA_id:003661 U68648 clone P15. prokMSA_id:003666 X68469 Mount Coot-tha region Brisbane Australia 5-10cm depth soil prokMSA_id:003682 X97105 str. TM22. prokMSA_id:003672 Y11623 clone 512. prokMSA_id:003673 Y11624 clone 53. prokMSA_id:003674 Y11626 clone 56. prokMSA_id:003675 Y11631 clone 613. prokMSA_id:003676 Y11635 clone 65. 2.25.3.2 ENVIRONMENTAL_RB_CLONES_GROUP 137 seqs 2.25.3.2.002 OTU 1 seq prokMSA_id:003696 AF130858 clone GFP1. 2.25.3.2.003 OTU 1 seq prokMSA_id:003695 AF013568 unnamed organism. 2.25.3.2.004 OTU 9 seqs prokMSA_id:003693 AF013545 unnamed organism. prokMSA_id:003694 AF013546 unnamed organism. prokMSA_id:065855 AF507473 soil clone S032 prokMSA_id:065854 AF507475 soil clone S036 prokMSA_id:065847 AF507480 soil clone S055 prokMSA_id:065845 AF507483 soil clone S061 prokMSA_id:065838 AF507495 soil clone S0109 prokMSA_id:065831 AF507501 soil clone S0119 prokMSA_id:065811 AF507522 soil clone S088 2.25.3.2.006 OTU 1 seq prokMSA_id:003690 AF013540 unnamed organism. 2.25.3.2.007 OTU 2 seqs prokMSA_id:003689 AF013532 unnamed organism. prokMSA_id:065930 AF507387 soil clone C0127 2.25.3.2.008 OTU 1 seq prokMSA_id:003687 AF013521 unnamed organism. 2.25.3.2.015 OTU 1 seq prokMSA_id:065614 AF507786 soil clone S1218 2.25.3.2.017 OTU 6 seqs prokMSA_id:065888 AF507436 soil clone C052 prokMSA_id:065852 AF507476 soil clone S039 prokMSA_id:055815 AF507486 soil clone S070 prokMSA_id:065839 AF507494 soil clone S0108 prokMSA_id:065721 AF507660 soil clone C1106 prokMSA_id:003697 Z95720 clone RB30. 2.25.3.2.018 OTU 1 seq prokMSA_id:065810 AF507523 soil clone S092 2.25.3.2.020 OTU 28 seqs prokMSA_id:064012 AB087360 clone:F35 prokMSA_id:003688 AF013525 unnamed organism. prokMSA_id:049181 AF422588 clone t013 prokMSA_id:034783 AF422609 clone t039 prokMSA_id:065929 AF507389 soil clone C0175 prokMSA_id:065856 AF507474 soil clone S034 prokMSA_id:065851 AF507477 soil clone S040 prokMSA_id:065843 AF507485 soil clone S067 prokMSA_id:065822 AF507511 soil clone S0143 prokMSA_id:065658 AF507735 soil clone S163 prokMSA_id:036304 AJ232840 clone LRS20 prokMSA_id:047009 AJ252631 Agricultural soil clone SC-I-35 prokMSA_id:044083 AJ252638 Agricultural soil clone SC-I-49 prokMSA_id:026633 AJ252640 Agricultural soil clone SC-I-54 prokMSA_id:018099 AJ252647 Agricultural soil clone SC-I-65 prokMSA_id:051840 AJ252687 Rhizosphere soil clone RSC-II-57 prokMSA_id:077843 AJ535744 Acidobacteriales clone OF39 prokMSA_id:079678 AY192225 Acidobacteria clone P3-2F prokMSA_id:084950 AY214717 Acidobacteria clone SL2-2-C10F prokMSA_id:086371 AY214900 Acidobacteria clone BAC-220H prokMSA_id:088510 AY289367 soil clone DS-111 prokMSA_id:090580 AY289368 soil clone DS-85 prokMSA_id:090463 AY289369 soil clone DS-24 prokMSA_id:097320 AY382609 clone S28 prokMSA_id:003686 Z95711 clone 32-11. prokMSA_id:021414 Z95712 species clone 32-19 prokMSA_id:024596 Z95715 species clone RB112 prokMSA_id:003692 Z95722 clone RB41. 2.25.3.2.021 OTU 1 seq prokMSA_id:065877 AF507449 soil clone C0174 2.25.3.2.022 OTU 1 seq prokMSA_id:065934 AF507381 soil clone C0128 2.25.3.2.023 OTU 1 seq prokMSA_id:074836 AJ232839 clone LRS13 2.25.3.2.024 OTU 1 seq prokMSA_id:084284 AY214855 Acidobacteria clone BB-2-B12F 2.25.3.2.999 poor quality 82 seqs prokMSA_id:043873 AF009990 prokMSA_id:022709 AF009995 prokMSA_id:042304 AF010011 prokMSA_id:022260 AF010061 prokMSA_id:034184 AF010064 prokMSA_id:046974 AF010080 prokMSA_id:022875 AF010098 prokMSA_id:043280 AF128711 soil C0122 prokMSA_id:039834 AF175598 WJGRT-33 prokMSA_id:028955 AF245035 16H1 prokMSA_id:027472 AF332274 clone C12-10 prokMSA_id:023166 AF388350 clone Ac74 prokMSA_id:018092 AF392726 clone CDF7 prokMSA_id:020410 AF423231 soil clone 1503-2 prokMSA_id:021803 AF423267 soil clone 456-2 prokMSA_id:034009 AF423275 soil clone 531-2 prokMSA_id:027310 AF446333 FL14A05 prokMSA_id:065887 AF507439 soil clone C031 prokMSA_id:065884 AF507441 soil clone C0226 prokMSA_id:065879 AF507446 soil clone C0206 prokMSA_id:065867 AF507457 soil clone C0208 prokMSA_id:065863 AF507465 soil clone S033 prokMSA_id:065826 AF507506 soil clone S0133 prokMSA_id:065820 AF507509 soil clone S0140 prokMSA_id:065804 AF507529 soil clone S0128 prokMSA_id:065803 AF507530 soil clone S0132 prokMSA_id:065799 AF507537 soil clone S0170 prokMSA_id:065787 AF507549 soil clone S0222 prokMSA_id:065732 AF507649 soil clone C1220 prokMSA_id:027844 AJ005063 soil organism clone 3 prokMSA_id:041590 AJ005065 soil organism clone 5 prokMSA_id:025746 AJ232793 clone TRS28 prokMSA_id:003691 AJ244310 clone Riz6H. prokMSA_id:037726 AJ252669 Rhizosphere soil clone RSC-II-2 prokMSA_id:070603 AJ421089 clone C9-K12 prokMSA_id:051409 AJ421094 clone C9-K25 prokMSA_id:072234 AJ421119 clone C11-K15 prokMSA_id:032535 AJ421125 clone C12-K31 prokMSA_id:023661 AJ421190 clone C1-K25 prokMSA_id:024234 AJ421897 clone Alt9-K57 prokMSA_id:018905 AJ421899 clone Alt9-K61 prokMSA_id:034708 AJ421902 clone Alt9-K71 prokMSA_id:090095 AJ577310 clone 96 prokMSA_id:044948 AY037598 soil clone S071 prokMSA_id:041989 AY037647 soil clone S143 prokMSA_id:051547 AY037685 earthworm cast clone C030 prokMSA_id:040602 AY037727 earthworm cast clone C123 prokMSA_id:050861 AY037762 earthworm cast clone C160 prokMSA_id:061409 AY043827 Acidobacterium group clone SMW4.118WL prokMSA_id:061393 AY043848 Acidobacterium group clone SMS9.69WL prokMSA_id:069499 AY143704 clone Lu22 prokMSA_id:079155 AY186799 clone unel5 prokMSA_id:080292 AY192199 Acidobacteria clone W1-2D prokMSA_id:080072 AY192231 Acidobacteria clone S1a-9B prokMSA_id:080576 AY192235 Acidobacteria clone S2-5A prokMSA_id:080540 AY193004 Acidobacteria clone DB4 prokMSA_id:085170 AY214718 Acidobacteria clone SL2-2-G7F prokMSA_id:086497 AY214743 Acidobacteria clone BB-1-G5 prokMSA_id:084426 AY214820 Acidobacteria clone BB-2-C3R prokMSA_id:084822 AY214860 Acidobacteria clone SL2-1E prokMSA_id:082622 AY214862 Acidobacteria clone SL2-12H prokMSA_id:083917 AY214866 Acidobacteria clone SL2-12A prokMSA_id:082990 AY214867 Acidobacteria clone SL2-6A prokMSA_id:086020 AY214868 Acidobacteria clone SL2-5C prokMSA_id:086602 AY214869 Acidobacteria clone SL2-5B prokMSA_id:083093 AY214874 Acidobacteria clone SL2-1F prokMSA_id:086284 AY214877 Acidobacteria clone SL2-8A prokMSA_id:082920 AY214878 Acidobacteria clone SL2-7E prokMSA_id:086009 AY214887 Acidobacteria clone SL2-11E prokMSA_id:090561 AY289360 soil clone DS-162 prokMSA_id:089308 AY289366 soil clone DS-6 prokMSA_id:088392 AY289370 soil clone ABS-319 prokMSA_id:089138 AY289371 soil clone DS-278 prokMSA_id:088734 AY289373 soil clone DS-281 prokMSA_id:096846 AY391622 soil clone M6 prokMSA_id:096173 AY391625 soil clone M9 prokMSA_id:096704 AY391662 soil clone M46 prokMSA_id:096434 AY391679 soil clone M63 prokMSA_id:095927 AY395130 clone D05ST prokMSA_id:095867 AY395139 clone D19ST prokMSA_id:095933 AY395169 clone G01K prokMSA_id:003698 U68590 clone M2. 2.25.3.3 ENVIRONMENTAL_CLONE_M43 3 seqs 2.25.3.3.999 poor quality 3 seqs prokMSA_id:096750 AY391651 soil clone M35 prokMSA_id:098662 AY391684 soil clone M68 prokMSA_id:003699 U68625 clone M43. 2.25.3.4 ENVIRONMENTAL_CLONE_MC22_GROUP 29 seqs 2.25.3.4.001 OTU 1 seq prokMSA_id:003700 X68463 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.25.3.4.002 OTU 3 seqs prokMSA_id:046879 AF145836 Metal-contaminated soil clone K20-39 prokMSA_id:052132 AF145871 Metal-contaminated soil clone K20-83 prokMSA_id:084133 AY242653 soil clone Tc120-F03 2.25.3.4.999 poor quality 25 seqs prokMSA_id:026339 AF078184 Grassland soil clone saf1_112 prokMSA_id:075988 AF431414 Acidobacterium group clone C16.27WL prokMSA_id:075174 AF431470 Acidobacterium group clone N41.134PG prokMSA_id:076300 AF431473 Acidobacterium group clone N42.15PG prokMSA_id:075164 AF431476 Acidobacterium group clone N42.45PG prokMSA_id:075530 AF431479 Acidobacterium group clone C46.02PG prokMSA_id:075883 AF431491 Acidobacterium group clone C46.86PG prokMSA_id:076112 AF431494 Acidobacterium group clone C46.96PG prokMSA_id:075451 AF431508 Acidobacterium group clone S51.16PG prokMSA_id:076033 AF431509 Acidobacterium group clone S51.22PG prokMSA_id:076064 AF431510 Acidobacterium group clone S51.33PG prokMSA_id:026086 AJ292775 WR8124 clone WR8124 prokMSA_id:028532 AJ292792 WR856 clone WR856 prokMSA_id:075755 AY150926 Acidobacteriales clone uv6 prokMSA_id:076646 AY174193 Acidobacteriales clone WS003 prokMSA_id:079464 AY186816 Acidobacteria clone uv6 prokMSA_id:083618 AY214791 Acidobacteria clone BB-1-A6 prokMSA_id:088318 AY289353 soil clone ABS-78 prokMSA_id:091596 AY330235 Acidobacteria clone g31-C10 prokMSA_id:091645 AY330240 Acidobacteria clone g31-B1 prokMSA_id:091575 AY330242 Acidobacteria clone g31-A12 prokMSA_id:091202 AY330243 Acidobacteria clone g6-B4 prokMSA_id:091090 AY330244 Acidobacteria clone g6-B10 prokMSA_id:096735 AY395181 Acidobacteria clone H24K prokMSA_id:003701 X68462 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.25.3.5 ENVIRONMENTAL_CLONE_MC103 8 seqs 2.25.3.5.999 poor quality 8 seqs prokMSA_id:069366 AF010095 prokMSA_id:061390 AY043851 Acidobacterium group clone SMS9.87WL prokMSA_id:083441 AY214818 Acidobacteria clone BB-2-G6R prokMSA_id:089321 AY289351 soil clone ABS-70 prokMSA_id:097989 AY395088 clone A04R prokMSA_id:097120 AY395123 Acidobacteria clone C16R prokMSA_id:098821 AY395192 clone J06K prokMSA_id:003702 X68465 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.25.3.6 ACBT.CAPSULATUM_GROUP 414 seqs 2.25.3.6.001 OTU 1 seq prokMSA_id:003748 X97101 clone TM29. 2.25.3.6.002 OTU 1 seq prokMSA_id:003746 X97100 str. TM13. 2.25.3.6.003 OTU 1 seq prokMSA_id:003736 U62828 clone RB04. 2.25.3.6.005 OTU 2 seqs prokMSA_id:079035 AJ536862 Holophaga sp. clone JG30-KF-A4 prokMSA_id:003734 Z73365 clone Ep_T1.154. 2.25.3.6.009 OTU 10 seqs prokMSA_id:077776 AB089126 Acidobacteriaceae clone:Rs-M39 prokMSA_id:003735 AF047646 clone TRB82. prokMSA_id:058105 AF498719 Ellin337 prokMSA_id:073733 AF498733 Ellin351 prokMSA_id:045591 AJ292578 WD228 clone WD228 prokMSA_id:042606 AJ292579 WD243 clone WD243 prokMSA_id:039070 AJ292587 WD277 clone WD277 prokMSA_id:066479 AY100612 clone cvf70122 prokMSA_id:086304 AY242655 soil clone Tc132-56 prokMSA_id:003730 X97098 clone TM2. 2.25.3.6.010 OTU 1 seq prokMSA_id:003728 AF050548 clone WCHA2-13. 2.25.3.6.011 OTU 1 seq prokMSA_id:003727 X68464 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.25.3.6.013 OTU 1 seq prokMSA_id:003709 Y11632 clone 614. 2.25.3.6.014 OTU 1 seq prokMSA_id:003708 Y11629 clone 611. 2.25.3.6.015 OTU 1 seq prokMSA_id:003707 U62829 clone RB05. 2.25.3.6.016 OTU 1 seq prokMSA_id:003705 Y07575 DA054 clone xxii 2.25.3.6.018 OTU 1 seq prokMSA_id:003703 X97097 clone TM1. 2.25.3.6.022 OTU 5 seqs prokMSA_id:017775 AF465650 Acidobacterium group YNPRH2B prokMSA_id:056406 AF523979 clone FW92 prokMSA_id:070614 AJ292573 WD2123 clone WD2123 prokMSA_id:046444 AJ295657 KF/GS-JG36-31 prokMSA_id:077027 AJ519366 Holophaga sp. clone JG37-AG-13 2.25.3.6.027 OTU 5 seqs prokMSA_id:049251 AF445097 clone Tc27 prokMSA_id:024594 AF445115 clone Tc51 prokMSA_id:037412 AF445141 clone Tc82 prokMSA_id:085974 AY242651 soil clone Tc130-26 prokMSA_id:086618 AY242652 soil clone Tc128-3 2.25.3.6.032 OTU 7 seqs prokMSA_id:029603 AF145826 Metal-contaminated soil clone K20-26 prokMSA_id:049134 AF145879 Metal-contaminated soil clone K20-95 prokMSA_id:076986 AJ519371 Holophaga sp. clone JG37-AG-42 prokMSA_id:076453 AJ519378 Holophaga sp. clone JG37-AG-67 prokMSA_id:083046 AY242646 soil clone TcA3 prokMSA_id:086414 AY242647 soil clone Tc129-14 prokMSA_id:003731 Z73363 clone Ep_T1.152. 2.25.3.6.034 OTU 1 seq prokMSA_id:056350 AF467364 Moorella sp. clone 1554 2.25.3.6.037 OTU 1 seq prokMSA_id:038680 AJ252649 Agricultural soil clone SC-I-68 2.25.3.6.038 OTU 27 seqs prokMSA_id:039272 AF145819 Metal-contaminated soil clone K20-16 prokMSA_id:037457 AF200696 Acidobacterium UA1 prokMSA_id:016327 AF200698 Acidobacterium UA2 prokMSA_id:046677 AF465656 Acidobacterium group YNPRH46A prokMSA_id:041797 AF465659 Acidobacterium group YNPRH72A prokMSA_id:058136 AF498692 Ellin310 prokMSA_id:073492 AF498693 Ellin311 prokMSA_id:063323 AF523892 clone RCP1-43 prokMSA_id:063322 AF523893 clone RCP2-3 prokMSA_id:063321 AF523894 clone RCP1-101 prokMSA_id:056082 AF523895 clone RCP1-32 prokMSA_id:063319 AF523897 clone RCP2-4 prokMSA_id:063320 AF523898 clone RCP2-97 prokMSA_id:055471 AF523976 clone FW44 prokMSA_id:056140 AF523990 clone FW29 prokMSA_id:077390 AF524859 K-5b10 prokMSA_id:058312 AF543504 clone BA2 prokMSA_id:051223 AJ292574 WD213 clone WD213 prokMSA_id:024040 AJ292577 WD226 clone WD226 prokMSA_id:025003 AJ292581 WD247 clone WD247 prokMSA_id:028064 AJ292583 WD257 clone WD257 prokMSA_id:047557 AJ292586 WD276 clone WD276 prokMSA_id:066600 AY096034 Acidobacterium sp. WJ7 prokMSA_id:086144 AY242654 soil clone Tc123-B09 prokMSA_id:092543 AY352450 Acidobacteria clone AVC7 prokMSA_id:073903 D26171 Acidobacterium capsulatum Acidophilic chemoorganotrophic prokMSA_id:003704 D26171 Acidobacterium capsulatum str. 161. 2.25.3.6.039 OTU 2 seqs prokMSA_id:058126 AF498705 Ellin323 prokMSA_id:069821 AF498708 Ellin326 2.25.3.6.040 OTU 1 seq prokMSA_id:071235 AF320933 Lake Michigan sediment LMBA13 2.25.3.6.041 OTU 1 seq prokMSA_id:051399 AF165271 Rainforest soil clone HRS-55 2.25.3.6.042 OTU 1 seq prokMSA_id:061819 AF529350 Acidobacterium group clone CLs73 2.25.3.6.043 OTU 1 seq prokMSA_id:061838 AF529322 Acidobacterium group clone CLi114 2.25.3.6.045 OTU 11 seqs prokMSA_id:058117 AF498709 Ellin327 prokMSA_id:072400 AF498727 Ellin345 prokMSA_id:063242 AF523983 clone FW43 prokMSA_id:063241 AF523984 clone FW45 prokMSA_id:038048 AJ292576 WD217 clone WD217 prokMSA_id:026225 AJ292588 WD281 clone WD281 prokMSA_id:066521 AY100560 clone cvf56091 prokMSA_id:056095 AY100564 clone cvf65127 prokMSA_id:055683 AY100590 clone cvf64037 prokMSA_id:003724 Z73364 clone Ep_T1.153. prokMSA_id:027855 Z73366 species clone Ep_T1.172 2.25.3.6.046 OTU 1 seq prokMSA_id:063248 AF523982 clone FW111 2.25.3.6.047 OTU 1 seq prokMSA_id:063315 AF523900 clone RCP2-90 2.25.3.6.048 OTU 1 seq prokMSA_id:063317 AF523896 clone RCP2-101 2.25.3.6.049 OTU 1 seq prokMSA_id:063318 AF523899 clone RCP2-102 2.25.3.6.050 OTU 1 seq prokMSA_id:014397 AJ000986 DA038 2.25.3.6.051 OTU 1 seq prokMSA_id:069818 AF523985 clone FW47 2.25.3.6.054 OTU 8 seqs prokMSA_id:031221 AF200699 Acidobacterium UA3 prokMSA_id:063246 AF523977 clone FW116 prokMSA_id:077412 AF524860 K-5b2 prokMSA_id:075133 AJ519365 Holophaga sp. clone JG37-AG-9 prokMSA_id:074896 AJ534632 Acidobacterium group clone JG36-TzT-31 prokMSA_id:093256 AJ582046 Acidobacteria clone JG36-GS-69 prokMSA_id:061405 AY043842 Acidobacterium group clone SMS9.16WL prokMSA_id:072528 Z73369 species clone Ep_T1.186 2.25.3.6.057 OTU 7 seqs prokMSA_id:073852 AF523978 clone FW59 prokMSA_id:027253 AJ295656 KF-JG30-18 prokMSA_id:077247 AJ519370 Holophaga sp. clone JG37-AG-40 prokMSA_id:074928 AJ519383 Holophaga sp. clone JG37-AG-89 prokMSA_id:075558 AJ519384 Holophaga sp. clone JG37-AG-93 prokMSA_id:076080 AJ519390 Holophaga sp. clone JG37-AG-126 prokMSA_id:079020 AJ536873 Holophaga sp. clone JG30a-KF-40 2.25.3.6.058 OTU 1 seq prokMSA_id:075299 AJ519374 Holophaga sp. clone JG37-AG-54 2.25.3.6.059 OTU 1 seq prokMSA_id:075632 AJ519388 Holophaga sp. clone JG37-AG-116 2.25.3.6.060 OTU 2 seqs prokMSA_id:076027 AJ519377 Holophaga sp. clone JG37-AG-61 prokMSA_id:078648 AJ536884 clone JG30-KF-AS19 2.25.3.6.062 OTU 10 seqs prokMSA_id:031615 AJ292580 WD244 clone WD244 prokMSA_id:036155 AJ292584 WD261 clone WD261 prokMSA_id:039712 AJ292590 WD298 clone WD298 prokMSA_id:075894 AJ519364 Holophaga sp. clone JG37-AG-5 prokMSA_id:076166 AJ519372 Holophaga sp. clone JG37-AG-47 prokMSA_id:093966 AJ582043 Acidobacteria clone JG36-GS-146 prokMSA_id:093614 AJ582044 Acidobacteria clone JG36-GS-126 prokMSA_id:093694 AJ582045 Acidobacteria clone JG36-GS-132 prokMSA_id:084652 AY242665 soil clone Tc135-225 prokMSA_id:003732 Y07646 clone DA052. 2.25.3.6.063 OTU 2 seqs prokMSA_id:076368 AJ534634 Acidobacterium group clone JG36-TzT-77 prokMSA_id:078839 AJ536864 Holophaga sp. clone JG30-KF-C37 2.25.3.6.064 OTU 1 seq prokMSA_id:076740 AJ534633 Acidobacterium group clone JG36-TzT-54 2.25.3.6.065 OTU 1 seq prokMSA_id:077048 AJ519640 Holophaga sp. clone Sh765B-AG-82 2.25.3.6.066 OTU 1 seq prokMSA_id:077218 AJ519373 Holophaga sp. clone JG37-AG-52 2.25.3.6.067 OTU 1 seq prokMSA_id:083259 AY217512 clone WCB29 2.25.3.6.068 OTU 1 seq prokMSA_id:084634 AY242666 soil clone TcA11 2.25.3.6.069 OTU 1 seq prokMSA_id:084886 AY274128 clone D118 2.25.3.6.999 poor quality 286 seqs prokMSA_id:019787 AB055990 WSB-8 prokMSA_id:076396 AB075060 clone:KCRS2 prokMSA_id:064066 AB087299 clone:CF21 prokMSA_id:064055 AB087310 clone:CF34 prokMSA_id:056120 AB087342 clone:F41 prokMSA_id:064029 AB087344 clone:F44 prokMSA_id:021486 AF078183 Grassland soil clone saf1_111 prokMSA_id:029675 AF078197 Grassland soil clone saf1_201 prokMSA_id:044510 AF078387 Grassland soil clone sl2_703 prokMSA_id:053557 AF078399 Grassland soil clone sl2_715 prokMSA_id:043978 AF165268 Rainforest soil clone HRS-46 prokMSA_id:074441 AF165272 Rainforest soil clone HRS-56 prokMSA_id:072954 AF200734 MRUNI3 prokMSA_id:030556 AF280959 clone J20 prokMSA_id:021603 AF315406 Forest soil YC04 prokMSA_id:048353 AF315409 temperate forest soil C6001 prokMSA_id:041904 AF315410 temperate forest soil C6011 prokMSA_id:027162 AF315411 temperate forest soil C6012 prokMSA_id:045976 AF315413 temperate forest soil C6014 prokMSA_id:022390 AF315417 temperate forest soil C6051s prokMSA_id:046584 AF315418 temperate forest soil C6052s prokMSA_id:051754 AF315421 temperate forest soil C6057s prokMSA_id:049976 AF320934 Lake Michigan sediment LMBA13 prokMSA_id:038336 AF353295 Tui2-32 prokMSA_id:046796 AF353298 Tui4-3 prokMSA_id:026150 AF357998 clone LO12.7 prokMSA_id:019623 AF429164 clone CR99-24-54 prokMSA_id:075352 AF431408 Acidobacterium group clone N11.133WL prokMSA_id:075432 AF431412 Acidobacterium group clone N12.25WL prokMSA_id:075465 AF431413 Acidobacterium group clone N12.40WL prokMSA_id:076057 AF431416 Acidobacterium group clone C16.34WL prokMSA_id:074978 AF431417 Acidobacterium group clone C16.36WL prokMSA_id:075858 AF431421 Acidobacterium group clone C16.47WL prokMSA_id:075958 AF431422 Acidobacterium group clone C16.48WL prokMSA_id:077257 AF431426 Acidobacterium group clone S21.31WL prokMSA_id:075683 AF431427 Acidobacterium group clone S21.37WL prokMSA_id:076277 AF431428 Acidobacterium group clone S21.55WL prokMSA_id:075204 AF431429 Acidobacterium group clone S22.04WL prokMSA_id:075993 AF431433 Acidobacterium group clone S22.51WL prokMSA_id:075382 AF431436 Acidobacterium group clone N26.139SM prokMSA_id:076916 AF431440 Acidobacterium group clone C31.17SM prokMSA_id:075699 AF431441 Acidobacterium group clone C31.22SM prokMSA_id:075658 AF431442 Acidobacterium group clone C31.32SM prokMSA_id:076359 AF431453 Acidobacterium group clone C32.39SM prokMSA_id:076419 AF431456 Acidobacterium group clone C32.48SM prokMSA_id:076185 AF431457 Acidobacterium group clone S36.06SM prokMSA_id:077195 AF431458 Acidobacterium group clone S36.08SM prokMSA_id:076983 AF431463 Acidobacterium group clone S37.06SM prokMSA_id:075198 AF431465 Acidobacterium group clone S37.27SM prokMSA_id:075221 AF431466 Acidobacterium group clone S37.36SM prokMSA_id:076373 AF431467 Acidobacterium group clone N41.108PG prokMSA_id:076204 AF431474 Acidobacterium group clone N42.38PG prokMSA_id:076981 AF431475 Acidobacterium group clone N42.44PG prokMSA_id:076960 AF431477 Acidobacterium group clone N42.46PG prokMSA_id:076385 AF431478 Acidobacterium group clone N42.65PG prokMSA_id:075051 AF431480 Acidobacterium group clone C46.03PG prokMSA_id:075592 AF431483 Acidobacterium group clone C46.37PG prokMSA_id:076387 AF431485 Acidobacterium group clone C46.55PG prokMSA_id:075516 AF431488 Acidobacterium group clone C46.69PG prokMSA_id:075200 AF431489 Acidobacterium group clone C46.73PG prokMSA_id:075272 AF431490 Acidobacterium group clone C46.83PG prokMSA_id:075673 AF431492 Acidobacterium group clone C46.88PG prokMSA_id:076675 AF431493 Acidobacterium group clone C46.89PG prokMSA_id:076367 AF431496 Acidobacterium group clone C47.14PG prokMSA_id:076663 AF431497 Acidobacterium group clone C47.17PG prokMSA_id:075716 AF431498 Acidobacterium group clone C47.23PG prokMSA_id:075175 AF431501 Acidobacterium group clone C47.35PG prokMSA_id:076040 AF431503 Acidobacterium group clone C47.39PG prokMSA_id:077266 AF431504 Acidobacterium group clone S51.02PG prokMSA_id:076460 AF431505 Acidobacterium group clone S51.03PG prokMSA_id:075286 AF431507 Acidobacterium group clone S51.05PG prokMSA_id:075510 AF431518 Acidobacterium group clone N11.106WL prokMSA_id:075498 AF431519 Acidobacterium group clone N11.116WL prokMSA_id:075784 AF431520 Acidobacterium group clone N11.121WL prokMSA_id:076125 AF431521 Acidobacterium group clone N12.08WL prokMSA_id:075106 AF431522 Acidobacterium group clone S21.52WL prokMSA_id:076325 AF431525 Acidobacterium group clone N26.110SM prokMSA_id:076794 AF431526 Acidobacterium group clone N26.113SM prokMSA_id:076329 AF431527 Acidobacterium group clone S37.30SM prokMSA_id:076828 AF431528 Acidobacterium group clone S37.31SM prokMSA_id:075163 AF431529 Acidobacterium group clone S37.47SM prokMSA_id:076954 AF431530 Acidobacterium group clone N41.129PG prokMSA_id:077141 AF431531 Acidobacterium group clone N42.66PG prokMSA_id:066660 AF432237 Acidobacterium sp. Ellin408 prokMSA_id:066629 AF432262 Acidobacterium sp. Ellin457 prokMSA_id:075828 AF432814 clone C33.24SM prokMSA_id:076932 AF432822 clone S38.38SM prokMSA_id:076079 AF432843 clone S54.21PG prokMSA_id:020177 AF445144 clone Tc86 prokMSA_id:038193 AF445145 clone Tc87 prokMSA_id:022495 AF465672 DGGE band YNPRH-B14 prokMSA_id:052815 AF465673 DGGE band YNPRH-B15 prokMSA_id:065765 AF507613 soil clone C191 prokMSA_id:065662 AF507724 soil clone S132 prokMSA_id:071711 AF523955 clone FW134 prokMSA_id:059452 AF540805 clone dp11u30 prokMSA_id:059401 AF540874 clone DP11u37 prokMSA_id:022693 AH010341 Lake Michigan sediment LMBA13 and genes prokMSA_id:030523 AJ233573 clone WR115 prokMSA_id:033055 AJ233574 clone WR133 prokMSA_id:053893 AJ233575 clone WR143 prokMSA_id:044749 AJ233576 clone WR145 prokMSA_id:043229 AJ233577 clone WR149 prokMSA_id:026908 AJ233578 clone WR152 prokMSA_id:034347 AJ233580 clone WR172 prokMSA_id:042965 AJ233581 clone WR180 prokMSA_id:026214 AJ233582 clone WR187 prokMSA_id:024440 AJ233584 clone WR1108 prokMSA_id:037612 AJ233585 clone WR1113 prokMSA_id:030447 AJ233586 clone WR1114 prokMSA_id:017259 AJ233587 clone WR1122 prokMSA_id:052426 AJ233588 clone WR1128 prokMSA_id:033629 AJ233589 clone 1129 prokMSA_id:046640 AJ247098 Bulk17 prokMSA_id:018757 AJ286730 Acidobacterium sp. isolate DGGE bands F & f prokMSA_id:073360 AJ286731 Acidobacterium sp. isolate DGGE bands G & g prokMSA_id:053844 AJ292572 WD207 clone WD207 prokMSA_id:040834 AJ292575 WD214 clone WD214 prokMSA_id:028855 AJ292771 WR805 clone WR805 prokMSA_id:036270 AJ292772 WR807 clone WR807 prokMSA_id:052571 AJ292773 WR8103 clone WR8103 prokMSA_id:019104 AJ292774 WR811 clone WR811 prokMSA_id:046723 AJ292776 WR8125 clone WR8125 prokMSA_id:040245 AJ292777 WR8129 clone WR8129 prokMSA_id:021209 AJ292778 WR8132 clone WR8132 prokMSA_id:050528 AJ292779 WR8133 clone WR8133 prokMSA_id:031471 AJ292780 WR8136 clone WR8136 prokMSA_id:035784 AJ292781 WR8148 clone WR8148 prokMSA_id:039520 AJ292782 WR8152 clone WR8152 prokMSA_id:050387 AJ292783 WR8155 clone WR8155 prokMSA_id:016644 AJ292784 WR8169 clone WR8169 prokMSA_id:054282 AJ292785 WR8176 clone WR8176 prokMSA_id:017973 AJ292786 WR820 clone WR820 prokMSA_id:019186 AJ292787 WR830 clone WR830 prokMSA_id:017028 AJ292788 WR832 clone WR832 prokMSA_id:051339 AJ292789 WR843 clone WR843 prokMSA_id:023436 AJ292790 WR851 clone WR851 prokMSA_id:047648 AJ292791 WR854 clone WR854 prokMSA_id:036022 AJ292793 WR858 clone WR858 prokMSA_id:043881 AJ292794 WR861 clone WR861 prokMSA_id:035472 AJ292795 WR863 clone WR863 prokMSA_id:037308 AJ292796 WR874 clone WR874 prokMSA_id:022926 AJ292797 WR877 clone WR877 prokMSA_id:030979 AJ292798 WR885 clone WR885 prokMSA_id:050789 AJ292799 WR886 clone WR886 prokMSA_id:022009 AJ292800 WR894 clone WR894 prokMSA_id:045286 AJ292801 WR896 clone WR896 prokMSA_id:072047 AJ297622 clone C44K37 prokMSA_id:052301 AJ297624 clone C44K50 prokMSA_id:025921 AJ308269 clone F99_07 prokMSA_id:050532 AJ419652 clone R08 prokMSA_id:071153 AJ518117 clone Mul01-24 prokMSA_id:055801 AJ518118 clone Mul01-27 prokMSA_id:056075 AJ518124 clone Mul01-48 prokMSA_id:055352 AJ518126 clone Mul01-51 prokMSA_id:057283 AJ518199 clone Mul2P1-40 prokMSA_id:057256 AJ518236 clone Mul2P2-34 prokMSA_id:057219 AJ518284 clone Mul2P3-46 prokMSA_id:057187 AJ518327 clone Neu2P1-63 prokMSA_id:070002 AJ518346 clone Neu2P3-13 prokMSA_id:055563 AJ518354 clone Neu2P3-85 prokMSA_id:057153 AJ518380 clone Neu4P1-59 prokMSA_id:057140 AJ518390 clone Neu4P1-73 prokMSA_id:072017 AJ518391 clone Neu4P1-75 prokMSA_id:057108 AJ518429 clone Neu4P3-30 prokMSA_id:057075 AJ518468 clone Neu4P3-90 prokMSA_id:092694 AJ580644 clone NN325-66 prokMSA_id:032943 AY037747 earthworm cast clone C145 prokMSA_id:061511 AY043707 Acidobacterium group clone NOW2.19WL prokMSA_id:055858 AY043710 Acidobacterium group clone NOW2.ACWL prokMSA_id:061506 AY043713 Acidobacterium group clone NOS7.132WL prokMSA_id:061505 AY043714 Acidobacterium group clone NOS7.146WL prokMSA_id:061503 AY043715 Acidobacterium group clone NOS7.148WL prokMSA_id:061504 AY043716 Acidobacterium group clone NOS7.155WL prokMSA_id:061502 AY043717 Acidobacterium group clone NOS7.31WL prokMSA_id:061414 AY043823 Acidobacterium group clone NMW3.204WL prokMSA_id:061412 AY043825 Acidobacterium group clone NMW3.90WL prokMSA_id:061410 AY043828 Acidobacterium group clone SMW4.133WL prokMSA_id:061408 AY043829 Acidobacterium group clone SMW4.43WL prokMSA_id:061407 AY043830 Acidobacterium group clone SMW4.60WL prokMSA_id:061406 AY043831 Acidobacterium group clone SMW4.75WL prokMSA_id:061404 AY043833 Acidobacterium group clone NMS8.117WL prokMSA_id:061403 AY043834 Acidobacterium group clone NMS8.141WL prokMSA_id:056402 AY043836 Acidobacterium group clone NMS8.26WL prokMSA_id:061400 AY043837 Acidobacterium group clone NMS8.38WL prokMSA_id:061399 AY043838 Acidobacterium group clone NMS8.56WL prokMSA_id:061397 AY043839 Acidobacterium group clone NMS8.88WL prokMSA_id:061394 AY043841 Acidobacterium group clone SMS9.136WL prokMSA_id:055496 AY043844 Acidobacterium group clone SMS9.54WL prokMSA_id:061395 AY043846 Acidobacterium group clone SMS9.66WL prokMSA_id:016570 AY072246 Acidobacterium group C6022 prokMSA_id:049212 AY072247 Acidobacterium group C6023 prokMSA_id:025835 AY072249 Acidobacterium group C6031 prokMSA_id:039046 AY072250 Acidobacterium group C6032 prokMSA_id:028132 AY072255 temperate forest soil C6040 prokMSA_id:039449 AY072257 Acidobacterium group C6056s prokMSA_id:083433 AY092379 clone BF35 prokMSA_id:083182 AY092380 clone BI13 prokMSA_id:085505 AY092381 clone BI38 prokMSA_id:084079 AY092382 clone BI117 prokMSA_id:085644 AY092383 clone BI89 prokMSA_id:082547 AY092384 clone BI6 prokMSA_id:084775 AY092385 clone BI172 prokMSA_id:066884 AY096127 clone M1-11 prokMSA_id:066870 AY096141 clone M2-72 prokMSA_id:066859 AY096154 clone F2-8 prokMSA_id:069578 AY145637 alpha FL10D06 prokMSA_id:071938 AY145650 Fibrobacteres FL12C07 prokMSA_id:071613 AY145655 Fibrobacteres FL12D10 prokMSA_id:076206 AY162831 Fibrobacteres/Acidobacteria group clone FL13G11 prokMSA_id:075103 AY174189 Acidobacteriales clone WS045 prokMSA_id:075495 AY174190 Acidobacteriales clone WS037 prokMSA_id:074945 AY174196 Acidobacteriales clone WS001 prokMSA_id:076074 AY174197 Acidobacteriales clone WS088 prokMSA_id:076106 AY174199 Acidobacteriales clone WS044 prokMSA_id:077187 AY174201 Acidobacteriales clone WS107 prokMSA_id:075605 AY174203 Acidobacteriales clone WS081 prokMSA_id:076668 AY174204 Acidobacteriales clone WS074 prokMSA_id:076962 AY174206 Acidobacteriales clone WS070 prokMSA_id:075270 AY174207 Acidobacteriales clone WS039 prokMSA_id:075397 AY174210 Acidobacteriales clone WS085 prokMSA_id:076817 AY174212 Acidobacteriales clone WS058 prokMSA_id:076837 AY174213 Acidobacteriales clone WS010 prokMSA_id:080998 AY192198 Acidobacteria clone W1-1H prokMSA_id:081019 AY192207 Acidobacteria clone W3-1C prokMSA_id:080025 AY192209 Acidobacteria clone W3-3F prokMSA_id:080020 AY192217 Acidobacteria clone P2-9D prokMSA_id:080815 AY192223 Acidobacteria clone P3-2B prokMSA_id:080650 AY192226 Acidobacteria clone P3-2G prokMSA_id:079803 AY192227 Acidobacteria clone P3-3F prokMSA_id:079956 AY192228 Acidobacteria clone P3-4G prokMSA_id:079690 AY192238 Acidobacteria clone S2-11A prokMSA_id:083934 AY214771 Acidobacteria clone BB-1-D1 prokMSA_id:086310 AY214830 Acidobacteria clone BB-2-G4F prokMSA_id:084105 AY242645 soil clone TcA35 prokMSA_id:088853 AY289354 soil clone ABS-86 prokMSA_id:089620 AY289355 soil clone ABS-618 prokMSA_id:088979 AY289356 soil clone ABS-15 prokMSA_id:091982 AY330236 Acidobacteria clone g31-C11 prokMSA_id:091926 AY330237 Acidobacteria clone g31-C12 prokMSA_id:091140 AY330238 Acidobacteria clone g31-B9 prokMSA_id:091075 AY330239 Acidobacteria clone g31-B5 prokMSA_id:091741 AY330241 Acidobacteria clone g31-A10 prokMSA_id:098078 AY391634 soil clone M18 prokMSA_id:098362 AY395089 Acidobacteria clone A05R prokMSA_id:096640 AY395094 Acidobacteria clone A16R prokMSA_id:097999 AY395096 Acidobacteria clone A18R prokMSA_id:096306 AY395101 Acidobacteria clone B07R prokMSA_id:095891 AY395115 Acidobacteria clone C01R prokMSA_id:097539 AY395121 Acidobacteria clone C11R prokMSA_id:098329 AY395174 clone G34K prokMSA_id:096008 AY395180 Acidobacteria clone H21K prokMSA_id:098797 AY395185 Acidobacteria clone I12K prokMSA_id:095341 AY395202 clone L03K prokMSA_id:033190 U35590 80R6 from Wisconsin agricultural soil prokMSA_id:003737 U62839 clone RB16. prokMSA_id:003710 U68598 clone M11. prokMSA_id:003711 U68602 clone M15. prokMSA_id:003725 U68612 clone M26. prokMSA_id:003712 U68613 clone M27. prokMSA_id:003738 U68618 clone M32. prokMSA_id:003713 U68619 clone M34. prokMSA_id:003739 U68620 clone M35. prokMSA_id:003714 U68624 clone M39. prokMSA_id:003733 U68633 clone M57. prokMSA_id:003740 U68635 clone M63. prokMSA_id:003715 U68637 clone M67. prokMSA_id:003741 U68638 clone M71. prokMSA_id:003742 U68640 clone P2. prokMSA_id:003716 U68641 clone P4. prokMSA_id:003717 U68645 clone P9. prokMSA_id:003743 U68651 clone P18. prokMSA_id:003718 U68655 clone P22. prokMSA_id:003744 U68658 clone P27. prokMSA_id:003726 U68659 clone P28. prokMSA_id:003719 U68667 clone P40. prokMSA_id:003720 U68673 clone P46. prokMSA_id:003721 U68678 clone P52. prokMSA_id:003745 U68686 clone P68. prokMSA_id:072463 U85142 clone ACK-C84 prokMSA_id:003722 X97104 str. TM44. prokMSA_id:003723 X97108 str. TM255. prokMSA_id:003747 X97109 str. TM200. prokMSA_id:003706 Y07607 str. mark13. prokMSA_id:072471 Z73367 species clone Ep_T1.184 prokMSA_id:003729 Z73368 clone Ep_T1.185. 2.26 ENVIRONMENTAL_CLONE_NH25-19 1 seq 2.26.999 poor quality 1 seq prokMSA_id:003749 L11970 Pacific Ocean station 25 100m depth clone 2.27 SPIROCHETES_AND_RELATIVES 1526 seqs 2.27.1 BRACHYSPIRA_GROUP 144 seqs 2.27.1.001 OTU 127 seqs prokMSA_id:077935 AB079583 Brachyspira ibaraki strain:HIS24/11/99 prokMSA_id:086423 AB092969 Brachyspira innocens isolate:D1D/6/15 prokMSA_id:083588 AB092970 Brachyspira innocens isolate:D4D/6/15 prokMSA_id:083206 AB092972 Brachyspira innocens isolate:D5A/11/9 prokMSA_id:085297 AB092973 Brachyspira innocens isolate:D6B/6/15 prokMSA_id:084263 AB093304 Brachyspira innocens isolate:D2A/6/15 prokMSA_id:084017 AB093305 Brachyspira innocens isolate:D3D/6/15 prokMSA_id:085039 AB093306 Brachyspira innocens isolate:D5D/6/15 prokMSA_id:083843 AB093307 Brachyspira innocens isolate:D7D/6/15 prokMSA_id:082681 AB093308 Brachyspira innocens isolate:D9D/6/15 prokMSA_id:083297 AB093309 Brachyspira innocens isolate:D10A/6/15 prokMSA_id:083600 AB093310 Brachyspira innocens isolate:D12A/6/15 prokMSA_id:083195 AB093311 Brachyspira innocens isolate:D1A/8/31 prokMSA_id:082667 AB093312 Brachyspira innocens isolate:D2A/8/31 prokMSA_id:084797 AB093313 Brachyspira innocens isolate:D3A/8/31 prokMSA_id:083734 AB093314 Brachyspira innocens isolate:D1A/10/5 prokMSA_id:084658 AB093315 Brachyspira innocens isolate:D2A/10/5 prokMSA_id:084303 AB093316 Brachyspira innocens isolate:D1A/10/25 prokMSA_id:086660 AB093317 Brachyspira innocens isolate:D2A/10/25 prokMSA_id:084740 AB093318 Brachyspira innocens isolate:D3B/10/25 prokMSA_id:084014 AB093319 Brachyspira innocens isolate:D4B/10/25 prokMSA_id:085067 AB093320 Brachyspira innocens isolate:D6B/10/25 prokMSA_id:086505 AB093322 Brachyspira innocens isolate:D9D/10/25 prokMSA_id:084667 AB093323 Brachyspira innocens isolate:D1A/11/9 prokMSA_id:085671 AB093324 Brachyspira innocens isolate:D2A/11/9 prokMSA_id:083009 AB093325 Brachyspira innocens isolate:D3A/11/9 prokMSA_id:082925 AB093326 Brachyspira innocens isolate:D4A/11/9 prokMSA_id:083872 AB094042 Brachyspira innocens prokMSA_id:086499 AB094043 Brachyspira innocens prokMSA_id:003789 AF172986 Brachyspira hyodysenteriae str. A4974. prokMSA_id:025279 AF200693 Brachyspira aalborgi strain W1 prokMSA_id:016876 AF228806 adhucomuHca09 prokMSA_id:025827 AF228807 adhucomuHca20 prokMSA_id:018811 AF228808 adhucomuHca25 prokMSA_id:047728 AF228809 adhucomuHca41 prokMSA_id:037832 AF228810 adhucomuHca61 prokMSA_id:030878 AF228811 adhucomuHca76 prokMSA_id:037834 AF228812 adhucomuHcc07 prokMSA_id:047881 AF228813 adhucomuHcc33 prokMSA_id:025199 AF228814 adhucomuHcc35 prokMSA_id:032489 AF228816 adhucomuHcc39 prokMSA_id:047721 AF228817 adhucomuTva17 prokMSA_id:042611 AF228818 adhucomuTva35 prokMSA_id:043373 AF228819 adhucomuTvb03 prokMSA_id:039956 AF228820 adhucomuTvb21 prokMSA_id:026030 AF228821 adhucomuTvb40 prokMSA_id:049210 AF228822 adhucomuTvb72 prokMSA_id:028079 AF245120 Brachyspira sp. A3077 prokMSA_id:027259 AF245121 Brachyspira sp. Cb104:95 prokMSA_id:032828 AF245122 Brachyspira sp. AN883:98 prokMSA_id:049836 AF245123 Brachyspira sp. AN2608:97 prokMSA_id:072200 AF395882 Brachyspira aalborgi AL prokMSA_id:072651 AF395883 Brachyspira aalborgi JLL prokMSA_id:075479 AY155458 Brachyspira pilosicoli prokMSA_id:082537 AY187050 Brachyspira sp. clone adhucolmuFr6 prokMSA_id:085869 AY187051 Brachyspira sp. clone juhuappmuNT1 prokMSA_id:083096 AY187052 Brachyspira sp. clone adhucolmuNT3 prokMSA_id:082707 AY187053 Brachyspira sp. clone adhucaemuNT4 prokMSA_id:086549 AY187054 Brachyspira sp. clone adhucolmuNT5 prokMSA_id:083764 AY187055 Brachyspira sp. clone adhucolmuWA3 prokMSA_id:084821 AY187056 Brachyspira sp. clone juhucaemuVic5 prokMSA_id:082516 AY187057 Brachyspira pilosicoli strain OmanN26 prokMSA_id:083114 AY187058 Brachyspira sp. Zoo12 prokMSA_id:083999 AY187059 Brachyspira sp. Zoo17 prokMSA_id:086574 AY187060 Brachyspira sp. clone Zoo18 prokMSA_id:084044 AY187061 Brachyspira sp. clone Zoo28 prokMSA_id:088867 AY312492 Brachyspira murdochii strain 56-150 prokMSA_id:090173 AY312846 Brachyspira canis strain AN 5288:01 prokMSA_id:090613 AY312847 Brachyspira canis strain AN 5358:01 prokMSA_id:088315 AY312848 Brachyspira canis strain AN 2657:01 prokMSA_id:089273 AY312849 Brachyspira canis strain AN 4752:01 prokMSA_id:092217 AY349933 Brachyspira sp. AN 4578/01 prokMSA_id:093115 AY349934 Brachyspira sp. CN 2 prokMSA_id:092258 AY349935 Brachyspira sp. AN 1788/01 prokMSA_id:092273 AY349936 Brachyspira canis strain A2 prokMSA_id:092499 AY349937 Brachyspira canis strain AN 4771/01 prokMSA_id:092253 AY349938 Brachyspira canis strain AN 5304/01 prokMSA_id:092341 AY349939 Brachyspira canis strain AN 5467/01 prokMSA_id:092933 AY349940 Brachyspira canis strain CN 6 prokMSA_id:093018 AY349941 Brachyspira canis strain CN 129 prokMSA_id:092446 AY349942 Brachyspira canis strain H98-13 prokMSA_id:092440 AY349943 Brachyspira pilosicoli 24072-93a prokMSA_id:092367 AY349944 Brachyspira pilosicoli Dog 17 prokMSA_id:092698 AY349945 Brachyspira pilosicoli CN 140 prokMSA_id:092748 AY349946 Brachyspira pilosicoli H98-5 prokMSA_id:092560 AY349947 Brachyspira aalborgi W2b prokMSA_id:092338 AY349948 Brachyspira sp. W2f prokMSA_id:092347 AY349949 Brachyspira aalborgi W3b prokMSA_id:092885 AY352281 Brachyspira hyodysenteriae AN 1409/01 prokMSA_id:092356 AY352282 Brachyspira sp. AN 1418/01 prokMSA_id:092045 AY352283 Brachyspira sp. AN 3599/02 prokMSA_id:092268 AY352284 Brachyspira sp. AN 3624/02 prokMSA_id:092968 AY352285 Brachyspira sp. AN 3886/02 prokMSA_id:092098 AY352286 Brachyspira sp. AN 3902/02 prokMSA_id:092107 AY352287 Brachyspira hyodysenteriae AN 3907/02 prokMSA_id:092278 AY352288 Brachyspira sp. AN 3930/02 prokMSA_id:092728 AY352289 Brachyspira sp. AN 3931/02 prokMSA_id:092292 AY352290 Brachyspira sp. AN 3949/02 prokMSA_id:092196 AY352291 Brachyspira hyodysenteriae AN 383:2/00 prokMSA_id:003762 M57741 Brachyspira hyodysenteriae str. B204 ATCC 31212. prokMSA_id:003753 U14915 Brachyspira innocens str. AN 1023:90 group III. prokMSA_id:003779 U14916 Brachyspira innocens str. AN 26:93 group II. prokMSA_id:003792 U14917 Brachyspira innocens str. C 301 group III. prokMSA_id:003781 U14918 Brachyspira innocens str. C 378 group III. prokMSA_id:003758 U14919 Brachyspira innocens str. C 320 group III. prokMSA_id:003770 U14920 Brachyspira innocens str. B256 group III. prokMSA_id:003776 U14921 Brachyspira innocens str. C 173 group III. prokMSA_id:003760 U14922 Brachyspira innocens str. C 109 group III. prokMSA_id:003791 U14923 Brachyspira innocens str. C 265 group III. prokMSA_id:003782 U14924 Brachyspira innocens str. AN 1004:90 group III. prokMSA_id:003755 U14925 Brachyspira innocens str. AN 3706:90 group III. prokMSA_id:003772 U14926 Brachyspira innocens str. C 555 group III. prokMSA_id:003761 U14927 Brachyspira innocens str. P 43 group IV. prokMSA_id:003763 U14928 Brachyspira innocens str. C 162 group IV. prokMSA_id:003786 U14929 Brachyspira innocens str. AN 916:90 group IV. prokMSA_id:003768 U14930 Brachyspira hyodysenteriae str. B78 . prokMSA_id:003756 U14931 Brachyspira hyodysenteriae str. AN 174:92. prokMSA_id:003788 U14932 Brachyspira hyodysenteriae str. B204. prokMSA_id:003783 U14933 Brachyspira innocens str. AN 983:90 group II. prokMSA_id:003751 U14934 Brachyspira innocens str. AN 520:93 group II. prokMSA_id:003784 U14935 Brachyspira innocens str. AN 167:90 group II. prokMSA_id:003771 U22838 Brachyspira innocens str. 155-20. prokMSA_id:003754 U23029 Brachyspira hyodysenteriae str. 2818.5. prokMSA_id:003750 U23033 Brachyspira hyodysenteriae str. PWS/A. prokMSA_id:003752 U23035 Brachyspira hyodysenteriae str. R1. prokMSA_id:003785 U23036 Brachyspira hyodysenteriae str. NIV-1. prokMSA_id:003777 Z22781 Brachyspira aalborgi NCTC 11492 . 2.27.1.999 poor quality 17 seqs prokMSA_id:084115 AB092971 Brachyspira innocens isolate:D5A/10/25 prokMSA_id:084409 AB092974 Brachyspira innocens isolate:D8D/10/25 prokMSA_id:084927 AB093321 Brachyspira innocens isolate:D7A/10/25 prokMSA_id:003787 M57742 Brachyspira hyodysenteriae str. A1. prokMSA_id:003780 M57743 Brachyspira hyodysenteriae str. B78 . prokMSA_id:003773 M57744 Brachyspira innocens str. B256 ATCC 29796 . prokMSA_id:003790 M57745 Brachyspira innocens str. 4/71. prokMSA_id:003759 U23030 Brachyspira innocens str. C1. prokMSA_id:003757 U23031 Brachyspira innocens str. HRM-7. prokMSA_id:003769 U23032 Brachyspira innocens str. P43/6/78. prokMSA_id:003774 U23034 Brachyspira innocens str. WES-B. prokMSA_id:003764 Y10314 Brachyspira pilosicoli str. HRM-7 group IS-A. prokMSA_id:003765 Y10315 Brachyspira pilosicoli str. Oman-54 froup IS-B. prokMSA_id:003766 Y10316 Brachyspira pilosicoli str. Oman-85 group IS-C. prokMSA_id:003767 Y10317 Brachyspira pilosicoli str. Oman-89 group IS-D. prokMSA_id:003775 Z26967 str. Australia N-Wes B. prokMSA_id:003778 Z26968 str. Italy N-HRM7. 2.27.2 BRV.ANDERSONII_GROUP 3 seqs 2.27.2.001 OTU 1 seq prokMSA_id:003793 L31543 Brevinema andersonii str. FS47. 2.27.2.999 poor quality 2 seqs prokMSA_id:003794 L31544 Brevinema andersonii str. MV116. prokMSA_id:003795 M59179 Brevinema andersonii str. CT 11616 J.F. Anderson ATCC 43811 . 2.27.3 SPIROCHAETA-TREPONEMA-BORRELIA_SUBDIVISION 1247 seqs 2.27.3.1 SPI.HALOPHILA_GROUP 112 seqs 2.27.3.1.001 OTU 1 seq prokMSA_id:003821 AF142845 clone BURTON-26. 2.27.3.1.002 OTU 1 seq prokMSA_id:003812 X62809 Spirochaeta thermophila DSM 6192. 2.27.3.1.003 OTU 1 seq prokMSA_id:003810 U80597 Spirochaeta smaragdinae SEBR 4228 . 2.27.3.1.004 OTU 1 seq prokMSA_id:003808 AF142796 clone ACE-19. 2.27.3.1.005 OTU 2 seqs prokMSA_id:003807 X93926 Spirochaeta asiatica str. Z-7591 DSM 8901 . prokMSA_id:003802 X93928 Spirochaeta africana str. Z-7692 DSM 8902 . 2.27.3.1.006 OTU 1 seq prokMSA_id:003805 AF146245 clone CLEAR-22. 2.27.3.1.007 OTU 1 seq prokMSA_id:003806 AF104475 Spirochaeta Olavius loisae endosymbiont 4. 2.27.3.1.008 OTU 3 seqs prokMSA_id:038562 AF373921 Spirochaeta sp. ASpG1 prokMSA_id:062701 AF507855 Spirochaetaceae clone ML623J-23 prokMSA_id:003804 X93927 Spirochaeta alkalica str. Z-7491 DSM 8900 . 2.27.3.1.009 OTU 1 seq prokMSA_id:003803 AB011318 clone MUG26. 2.27.3.1.010 OTU 2 seqs prokMSA_id:063217 AF524009 clone FW67 prokMSA_id:003801 X97096 Spirochaeta sp. str. TM3. 2.27.3.1.011 OTU 1 seq prokMSA_id:003799 M88722 Spirochaeta halophila str. RS1 ATCC 29478 . 2.27.3.1.012 OTU 1 seq prokMSA_id:003797 M88723 Spirochaeta litoralis str. R1 ATCC 27000 . 2.27.3.1.013 OTU 5 seqs prokMSA_id:017526 AF424377 Spirochaeta sp. MERTZ_21CM_149 prokMSA_id:079522 AJ431237 Cytophaga sp. BHI60-51 strain BHI60-51 prokMSA_id:079121 AJ431238 Cytophaga sp. BHI80-3 strain BHI80-3 prokMSA_id:079373 AJ431239 Cytophaga sp. BHI80-86 strain BHI80-86 prokMSA_id:059817 AY133371 clone OB3_185 2.27.3.1.014 OTU 9 seqs prokMSA_id:069347 AB085023 spirochete clone: NkS68 prokMSA_id:069081 AB085025 spirochete clone: NkS70 prokMSA_id:069428 AB085044 spirochete clone: NkS96 prokMSA_id:071386 AB085066 spirochete clone: NkS2-24 prokMSA_id:073038 AB085073 spirochete clone: NkS2-31 prokMSA_id:074422 AB085092 spirochete clone: NkS2-50 prokMSA_id:071318 AB085097 spirochete clone: NkS2-55 prokMSA_id:073936 AB085122 spirochete clone: NkS2-83 prokMSA_id:069840 AB085129 spirochete clone: NkS2-90 2.27.3.1.015 OTU 1 seq prokMSA_id:056171 AF454308 spirochete clone ML320J-13 2.27.3.1.016 OTU 3 seqs prokMSA_id:023500 AB045742 fiber-attaching rumen SY8 prokMSA_id:043701 AB056637 fiber-attaching rumen clone:SY21 prokMSA_id:089483 AB113672 clone:AAB35 2.27.3.1.017 OTU 1 seq prokMSA_id:025074 AF424376 spirochete MERTZ_21CM_139 2.27.3.1.018 OTU 1 seq prokMSA_id:026711 AF211321 spirochete MT4 2.27.3.1.019 OTU 5 seqs prokMSA_id:036866 AF349763 DCE33 prokMSA_id:028706 AF357916 Spirochaeta sp. Buddy prokMSA_id:074347 AJ249227 DCE25 prokMSA_id:066166 AJ488100 clone IIIB-9 prokMSA_id:083127 AY228699 clone SSE7 2.27.3.1.020 OTU 1 seq prokMSA_id:036699 AF211318 spirochete MT10 2.27.3.1.021 OTU 1 seq prokMSA_id:037803 AF166259 Spironema culicis 2.27.3.1.022 OTU 1 seq prokMSA_id:038414 AF211325 spirochete MT57 2.27.3.1.023 OTU 1 seq prokMSA_id:038610 AJ419823 Spirochaeta sp. clone za29 2.27.3.1.024 OTU 1 seq prokMSA_id:039709 AF211319 spirochete MT6 2.27.3.1.025 OTU 1 seq prokMSA_id:039917 AF211329 spirochete MT9 2.27.3.1.026 OTU 1 seq prokMSA_id:047761 AF424374 Spirochaeta sp. MERTZ_2CM_106 2.27.3.1.027 OTU 1 seq prokMSA_id:052112 AF357917 Spirochaeta sp. Grapes 2.27.3.1.028 OTU 1 seq prokMSA_id:063216 AF524010 clone FW20 2.27.3.1.029 OTU 2 seqs prokMSA_id:077774 AB088897 Spirochaeta sp. clone:Rs-B68 prokMSA_id:077624 AB088910 Treponema sp. clone:Rs-H09 2.27.3.1.030 OTU 1 seq prokMSA_id:077729 AB088873 Spirochaeta sp. clone:Rs-D16 2.27.3.1.031 OTU 1 seq prokMSA_id:077998 AY171325 clone s110 2.27.3.1.032 OTU 1 seq prokMSA_id:079117 AJ431240 Spirochaeta sp. BHI80-158 strain BHI80-158 2.27.3.1.033 OTU 1 seq prokMSA_id:079967 AB094815 clone:OHKB2.43 2.27.3.1.034 OTU 1 seq prokMSA_id:086197 AY231305 clone ER1_5 2.27.3.1.035 OTU 1 seq prokMSA_id:088258 AY327227 clone ZB35 2.27.3.1.036 OTU 1 seq prokMSA_id:088796 AY327228 clone ZB36 2.27.3.1.037 OTU 1 seq prokMSA_id:090321 AY327225 clone ZB38 2.27.3.1.999 poor quality 52 seqs prokMSA_id:003816 AB003438 str. Kusaya gravy. prokMSA_id:003817 AB003441 str. Kusaya gravy. prokMSA_id:003818 AB003443 str. Kusaya gravy. prokMSA_id:019503 AB011319 clone: MUG27 prokMSA_id:051832 AB047123 OCG12 prokMSA_id:041293 AB062692 clone:DGGE band F prokMSA_id:042581 AB062693 clone:DGGE band G prokMSA_id:051670 AB062694 clone:DGGE band H prokMSA_id:023558 AB062695 clone:DGGE band I prokMSA_id:068478 AB081541 Oil-MT1-8 prokMSA_id:069914 AB085145 spirochete clone: NkS2-24lh prokMSA_id:003819 AF149883 str. 02.95.2. prokMSA_id:003800 AF180309 clone apg10. prokMSA_id:016352 AF211278 gamma CE47 prokMSA_id:051692 AF211302 MT2 prokMSA_id:030121 AF211320 spirochete MT7 prokMSA_id:026046 AF211322 spirochete MT53 prokMSA_id:024574 AF211323 spirochete MT51 prokMSA_id:033815 AF211324 spirochete MT47 prokMSA_id:046926 AF211326 spirochete MT52 prokMSA_id:054091 AF211328 spirochete MT49 prokMSA_id:045513 AF218215 clone LSI prokMSA_id:045420 AF339856 clone H prokMSA_id:068082 AF365660 clone BM89DS6BbC4 prokMSA_id:017024 AF424375 spirochete MERTZ_2CM_160 prokMSA_id:028206 AF441885 spirochete clone CD13H9 prokMSA_id:049405 AF442010 spirochete clone CD12D2 prokMSA_id:062695 AF507856 Spirochaetaceae clone ML623J-21 prokMSA_id:069093 AF544932 spirochete prokMSA_id:003798 AJ011667 str. DGGE amplificate BS2.1. prokMSA_id:069102 AJ287098 spirochete Za29 prokMSA_id:060167 AJ347045 clone TK41 prokMSA_id:084413 AJ495608 spirochete isolate SA-8 prokMSA_id:084407 AJ495624 spirochete isolate SA-25 prokMSA_id:084134 AJ495627 spirochete isolate SA-28 prokMSA_id:056340 AJ518709 clone Sai4P3-19 prokMSA_id:072511 AJ518723 clone Sai4P3-44 prokMSA_id:056871 AJ518730 clone Sai4P3-53 prokMSA_id:021994 AY013611 Banisveld landfill BVA74a prokMSA_id:023534 AY013612 Banisveld landfill BVA74b prokMSA_id:047466 AY013616 Banisveld landfill BVA86b prokMSA_id:047294 AY013652 Banisveld landfill BVB19a prokMSA_id:026771 AY038414 spirochete clone CD5C5 prokMSA_id:078357 AY171388 clone s91 prokMSA_id:003814 L47205 str. env.OS_ace8. prokMSA_id:003813 M71239 Spirochaeta bajacaliforniensis str. BA-2 ATCC 35968. prokMSA_id:003820 M87055 Spirochaeta sp. str. Antarctic DSM 6211. prokMSA_id:003796 M88720 Spirochaeta isovalerica str. MA-2 ATCC 33939 . prokMSA_id:003815 NONE str. PL12MY. prokMSA_id:003809 U81718 clone vadinDC72. prokMSA_id:003822 U81736 clone vadinHA70. prokMSA_id:003811 X52551 Octopus Spring microbial mat from Yellowstone NP clone H. 2.27.3.2 TREPONEMA_GROUP 810 seqs 2.27.3.2.1 TRP.BRYANTII_SUBGROUP 34 seqs 2.27.3.2.1.001 OTU 1 seq prokMSA_id:003837 AB015827 Spirochaeta sp. 2.27.3.2.1.002 OTU 1 seq prokMSA_id:003836 AF023050 Treponema 9:A:D01 str. 9:A:D01. 2.27.3.2.1.003 OTU 4 seqs prokMSA_id:003833 AB009242 clone RFN95. prokMSA_id:003830 AF001693 clone RC1. prokMSA_id:003831 AF001745 clone RF13. prokMSA_id:003829 M57737 Treponema bryantii str. RUS-1 ATCC 33254 . 2.27.3.2.1.004 OTU 1 seq prokMSA_id:003826 M71238 Treponema saccharophilum str. PB ATCC 43261 . 2.27.3.2.1.005 OTU 2 seqs prokMSA_id:017711 AB045738 fiber-attaching rumen SY2 prokMSA_id:039089 AB056638 fiber-attaching rumen clone:SY22 2.27.3.2.1.006 OTU 3 seqs prokMSA_id:035382 AJ408046 equine intestinal sp. CL11 clone CL11 prokMSA_id:025358 AJ408118 equine intestinal sp. DL31 clone DL31 prokMSA_id:028845 AJ408229 equine intestinal sp. PL22 clone PL22 2.27.3.2.1.007 OTU 1 seq prokMSA_id:031136 AJ408249 equine intestinal sp. PW03 clone PW03 2.27.3.2.1.008 OTU 1 seq prokMSA_id:042877 AF302940 Treponema pectinovorum OMZ831 2.27.3.2.1.009 OTU 1 seq prokMSA_id:071422 AF357565 mpn-isolate group 17 2.27.3.2.1.010 OTU 1 seq prokMSA_id:088078 AB113675 clone:AAB39 2.27.3.2.1.011 OTU 1 seq prokMSA_id:090744 AB113677 clone:AAB41 2.27.3.2.1.012 OTU 1 seq prokMSA_id:090767 AB113682 clone:AAB46 2.27.3.2.1.999 poor quality 16 seqs prokMSA_id:003834 AF068351 Treponema Treponema clone RFS104p. prokMSA_id:003835 AF068389 Treponema Treponema clone RFS77p. prokMSA_id:023370 AY006696 rumen prokMSA_id:031868 AY006722 rumen prokMSA_id:037661 AY006744 rumen prokMSA_id:074697 AY006786 rumen prokMSA_id:033504 AY006798 rumen prokMSA_id:039750 AY006845 rumen prokMSA_id:089480 AY311626 clone YRCB36 prokMSA_id:088449 AY315372 rumen clone JRCK48 prokMSA_id:003824 D63605 clone UN2. prokMSA_id:003827 M57738 Treponema succinifaciens str. 6091 ATCC 33096 . prokMSA_id:003825 M59294 Treponema sp. str. CA. prokMSA_id:003823 M71237 Treponema pectinovorum ATCC 33768 . prokMSA_id:003828 U81669 clone vadinBB62. prokMSA_id:003832 Z77450 str. 1-700 C24. 2.27.3.2.2 TRP.SOCRANSKII_SUBGROUP 102 seqs 2.27.3.2.2.001 OTU 1 seq prokMSA_id:003892 X89049 str. sp40-12. 2.27.3.2.2.002 OTU 1 seq prokMSA_id:003889 Y16568 Treponema brennaborense. 2.27.3.2.2.004 OTU 3 seqs prokMSA_id:003886 AB015824 Spirochaeta sp. prokMSA_id:003887 AB015826 Spirochaeta sp. prokMSA_id:078163 AB088859 Treponema sp. clone:Rs-A48 2.27.3.2.2.005 OTU 1 seq prokMSA_id:003885 AF023043 Treponema 10:A:C25 str. 10:A:C25. 2.27.3.2.2.007 OTU 11 seqs prokMSA_id:003880 AF023038 Treponema IV:17B:C21 str. IV:17B:C21. prokMSA_id:003882 AF023040 Treponema IV:17C:GF6 str. IV:17C:GF6. prokMSA_id:003883 AF023041 Treponema IV:17D:D31 str. IV:17D:D31. prokMSA_id:003884 AF023042 Treponema IV:18:C9 str. IV:18:C9. prokMSA_id:003888 AF056342 Treponema IV:17E:D36 str. IV:17E:D36. prokMSA_id:038741 AJ131282 Treponema lecithinolyticum isolate PFB4G prokMSA_id:093057 AY349417 Treponema sp. oral clone JU025 prokMSA_id:095168 AY369247 Treponema sp. OMZ 839 prokMSA_id:094916 AY369248 Treponema sp. OMZ 840 prokMSA_id:063015 X87139 Treponema lecithinolytikum patient PFB4G prokMSA_id:003861 X87140 Treponema maltophilum str. BR. 2.27.3.2.2.008 OTU 12 seqs prokMSA_id:030690 AB032001 Treponema clone RsDiSp3 prokMSA_id:043411 AB032002 Treponema clone RsDiSp9 prokMSA_id:029435 AB032003 Treponema clone HsPySp1 prokMSA_id:046814 AB032004 Treponema clone HsPySp20 prokMSA_id:022641 AB032005 Treponema clone HsDiSp314 prokMSA_id:077852 AB088858 Treponema sp. clone:Rs-G65 prokMSA_id:078226 AB088904 Treponema sp. clone:Rs-P12 prokMSA_id:003876 AF068425 Treponema Treponema clone RFS105. prokMSA_id:003877 AF068429 Treponema Treponema clone RFS2. prokMSA_id:003878 AF068430 Treponema Treponema clone RFS66. prokMSA_id:003879 AF068432 Treponema Treponema clone RFS9. prokMSA_id:074338 D63605 Spirochetes clone UN2 2.27.3.2.2.009 OTU 9 seqs prokMSA_id:047422 AB031997 Treponema clone RsDiSp1 prokMSA_id:026242 AB031998 Treponema clone RsDiSp12 prokMSA_id:037517 AB031999 Treponema clone HsPySp15 prokMSA_id:036987 AB032000 Treponema clone HsPySp16 prokMSA_id:078106 AB088860 Treponema sp. clone:Rs-E01 prokMSA_id:077899 AB088883 Treponema sp. clone:Rs-Q63 prokMSA_id:078359 AB088884 Treponema sp. clone:Rs-J14 prokMSA_id:003862 AF068335 Treponema Treponema clone RFS12. prokMSA_id:072654 D63589 Spirochetes clone UN100 2.27.3.2.2.010 OTU 2 seqs prokMSA_id:003860 AF182837 Treponema 5:22:BH022 str. 5:22:BH022. prokMSA_id:029328 AF385536 Treponema sp. oral clone BZ013 2.27.3.2.2.011 OTU 4 seqs prokMSA_id:003855 AF023045 Treponema V:20:D62 str. V:20:D62. prokMSA_id:003856 AF023046 Treponema V:A:U7A str. V:A:U7A. prokMSA_id:003859 AF182834 Treponema 5:C:AT040 str. 5:C:AT040. prokMSA_id:003852 Y09959 Treponema amylovorum. 2.27.3.2.2.012 OTU 1 seq prokMSA_id:003854 AF023044 Treponema V:19:D36 str. V:19:D36. 2.27.3.2.2.013 OTU 5 seqs prokMSA_id:003853 AF033304 Treponema Smibert-2 str. D96NR-3. prokMSA_id:036464 AF302937 Treponema parvum OMZ833 prokMSA_id:030574 AF302938 Treponema parvum OMZ842 prokMSA_id:017854 AF302939 Treponema parvum OMZ843 prokMSA_id:049225 AF302941 Treponema parvum OMZ832 2.27.3.2.2.014 OTU 20 seqs prokMSA_id:003839 AB015887 Treponema socranskii subsp. socranskii str. 122C. prokMSA_id:003840 AB015888 Treponema socranskii subsp. socranskii str. 1166. prokMSA_id:003841 AB015889 Treponema socranskii subsp. socranskii str. 128B. prokMSA_id:003842 AB015890 Treponema socranskii subsp. socranskii str. 1267. prokMSA_id:003843 AB015891 Treponema socranskii subsp. buccale str. 351. prokMSA_id:003844 AB015892 Treponema socranskii subsp. buccale str. B418. prokMSA_id:003845 AB015893 Treponema socranskii subsp. buccale str. T10. prokMSA_id:003846 AF033303 Treponema Smibert-5 str. D120CR-1. prokMSA_id:003851 AF033305 Treponema socranskii subsp. buccale ATCC 35534 . prokMSA_id:003838 AF033306 Treponema socranskii subsp. socranskii str. D56BRIII6 ATCC 35536 prokMSA_id:003850 AF033307 Treponema socranskii subsp. paredis ATCC 35535 . prokMSA_id:003847 AF033308 Treponema socranskii subsp. '04' str. D11B-2. prokMSA_id:003848 AF056343 Treponema VI:G:G47 str. VI:G:G47. prokMSA_id:003849 AF056344 Treponema VI:F:C44 str. VI:F:C44. prokMSA_id:074330 AJ289168 E1-K3 prokMSA_id:024210 AY005083 Treponema sp. 6:H:D15A-4 prokMSA_id:092894 AY349418 Treponema Group 6 sp. oral clone IL034 prokMSA_id:094913 AY369246 Treponema socranskii subsp. '04' strain D40DR-2 prokMSA_id:095113 AY369254 Treponema socranskii subsp. paredis strain OMZ 882 prokMSA_id:095105 AY369255 Treponema socranskii subsp. buccale strain OMZ 884 2.27.3.2.2.015 OTU 1 seq prokMSA_id:042928 AJ408166 equine intestinal sp. ML20 clone ML20 2.27.3.2.2.016 OTU 1 seq prokMSA_id:068837 AF371928 clone p-2159-s959-3 2.27.3.2.2.017 OTU 1 seq prokMSA_id:083155 AY230217 Treponema sp. 7CPL208 2.27.3.2.2.999 poor quality 29 seqs prokMSA_id:041137 AB028377 oral AP60-18 prokMSA_id:016405 AB028379 oral AP60-20 prokMSA_id:024156 AB028386 oral AP60-29 prokMSA_id:032459 AB028404 oral AP60-52 prokMSA_id:048835 AB028447 oral RP55-60 prokMSA_id:003890 AF016731 unnamed organism. prokMSA_id:003881 AF023039 Treponema IV:17B:D4B str. IV:17B:D4B. prokMSA_id:003857 AF023047 Treponema 5:21:3104 str. 5:21:3104. prokMSA_id:003858 AF023048 Treponema 5:22:384 str. 5:22:384. prokMSA_id:003863 AF068350 Treponema Treponema clone RFS103p. prokMSA_id:003864 AF068353 Treponema Treponema clone RFS107p. prokMSA_id:003865 AF068358 Treponema Treponema clone RFS28p. prokMSA_id:003866 AF068359 Treponema Treponema clone RFS30p. prokMSA_id:003867 AF068368 Treponema Treponema clone RFS45p. prokMSA_id:003868 AF068369 Treponema Treponema clone RFS46p. prokMSA_id:003869 AF068373 Treponema Treponema clone RFS51p. prokMSA_id:003870 AF068376 Treponema Treponema clone RFS55p. prokMSA_id:044651 AF068380 Treponema clone RFS65p small subunit rrn prokMSA_id:003871 AF068385 Treponema Treponema clone RFS72p. prokMSA_id:003872 AF068388 Treponema Treponema clone RFS76p. prokMSA_id:028926 AF068390 Treponema clone RFS78p small subunit rrn prokMSA_id:003873 AF068393 Treponema Treponema clone RFS83p. prokMSA_id:003874 AF068404 Treponema Treponema clone RFS98p. prokMSA_id:003875 AF068411 Treponema Treponema clone RFS43p. prokMSA_id:070936 AJ133477 Treponema sp. isolate pegbd1 prokMSA_id:047853 AJ241784 microorganism clone Cow45 prokMSA_id:003893 D63588 clone UN10. prokMSA_id:003891 D63589 clone UN100. prokMSA_id:003894 D63615 clone UN39. 2.27.3.2.3 TRP.PALLIDUM_SUBGROUP 103 seqs 2.27.3.2.3.001 OTU 2 seqs prokMSA_id:040086 AF426102 Treponema pallidum subsp. pertenue prokMSA_id:003964 M88726 Treponema pallidum str. Nichols. 2.27.3.2.3.002 OTU 8 seqs prokMSA_id:057743 AF546873 Treponema sp. 1A prokMSA_id:057744 AF546874 Treponema sp. 3A prokMSA_id:057745 AF546875 Treponema sp. 4A prokMSA_id:057742 AF546876 Treponema sp. 5B prokMSA_id:057741 AF546877 Treponema sp. 9-3301 prokMSA_id:057738 AF546878 Treponema sp. 2-1498 prokMSA_id:088036 AY242862 Treponema sp. HW-2003 prokMSA_id:003963 Y08894 Treponema sp. 2.27.3.2.3.006 OTU 39 seqs prokMSA_id:003938 AF023051 Treponema I:B:C7 str. I:B:C7. prokMSA_id:003939 AF023052 Treponema I:G:C1 str. I:G:C1. prokMSA_id:003940 AF023053 Treponema I:F:D13 str. I:F:D13. prokMSA_id:003941 AF023054 Treponema I:D:T31 str. I:D:T31. prokMSA_id:003953 AF023055 Treponema I:G:T21 str. I:G:T21. prokMSA_id:003942 AF023056 Treponema I:L:Y1 str. I:L:Y1. prokMSA_id:003943 AF023057 Treponema I:E:U17A str. I:E:U17A. prokMSA_id:003944 AF023059 Treponema I:J:T19 str. I:J:T19. prokMSA_id:003945 AF023060 Treponema I:K:T3 str. I:K:T3. prokMSA_id:003946 AF023062 Treponema I:M:G54 str. I:M:G54. prokMSA_id:003947 AF023063 Treponema I:N:D47 str. I:N:D47. prokMSA_id:003929 AF033309 Treponema vincentii ATCC 35580. prokMSA_id:003930 AF033310 Treponema vincentii str. N9 ATCC 700013. prokMSA_id:003950 AF056337 Treponema I:8:G57 str. I:P:G57. prokMSA_id:003951 AF056338 Treponema I:O:AF16 str. I:O:AF16. prokMSA_id:003952 AF056339 Treponema I:C:BA223 str. I:C:BA223. prokMSA_id:003931 AF061347 Treponema I:Q:AT20 str. AT20. prokMSA_id:003932 AF061348 Treponema I:R:AF26 str. AF26. prokMSA_id:003933 AF061349 Treponema I:S:AT39 str. AT39. prokMSA_id:003934 AF061350 Treponema I:T:AT24 str. AT24. prokMSA_id:003935 AF061351 Treponema I:U:Y9 str. Y9. prokMSA_id:003955 AF182831 Treponema I:V:AU076 str. I:V:AU076. prokMSA_id:003956 AF182832 Treponema I:W:T040 str. I:W:T040. prokMSA_id:072610 AF385499 Treponema sp. oral clone EW054 prokMSA_id:003954 AJ010951 Treponema sp. str. ovine footrot. prokMSA_id:030723 AJ289172 E1-K2 prokMSA_id:071146 AJ289178 E1-K1 prokMSA_id:045933 AY005081 Treponema sp. 1:Z:AF068 oral clone AF068 prokMSA_id:071034 AY005082 Treponema sp. 1:AA:DW001 oral clone DW001 prokMSA_id:056392 AY119690 Treponema vincentii prokMSA_id:064386 AY119691 Treponema sp. UB1467 prokMSA_id:093141 AY341822 Treponema genomosp. P1 clone P4GB_42 prokMSA_id:092774 AY349416 Treponema sp. oral clone JU031 prokMSA_id:094493 AY369250 Treponema vincentii strain OMZ 858 prokMSA_id:095089 AY369251 Treponema vincentii strain OMZ 860 prokMSA_id:094775 AY369252 Treponema vincentii strain OMZ 861 prokMSA_id:094564 AY369253 Treponema vincentii strain OMZ 862 prokMSA_id:097690 AY387410 Treponema sp. RLUH-1 prokMSA_id:003896 D85437 Treponema medium str. G7201. 2.27.3.2.3.007 OTU 1 seq prokMSA_id:003949 L78126 str. 2-1498. 2.27.3.2.3.008 OTU 21 seqs prokMSA_id:003907 AF023030 Treponema II:10:D12 str. II:10:D12. prokMSA_id:003908 AF023031 Treponema II:C:T1 str. II:C:T1. prokMSA_id:003909 AF023032 Treponema II:D:G93 str. II:D:G93. prokMSA_id:003910 AF023033 Treponema II:11:U61 str. II:E:U61. prokMSA_id:003911 AF023034 Treponema II:11:C3 str. II:11:C3. prokMSA_id:003912 AF023035 Treponema II:11:C57 str. II:11:C57. prokMSA_id:003913 AF023036 Treponema II:H:D11 str. II:H:D11. prokMSA_id:003914 AF023037 Treponema II:I:C53 str. II:I:C53. prokMSA_id:003919 AF109070 str. 9-3143. prokMSA_id:003920 AF109071 str. 9-3143. prokMSA_id:003898 AF139203 Treponema denticola ATCC 35405. prokMSA_id:003899 AF139204 Treponema denticola ATCC 35404. prokMSA_id:036733 AF363634 Treponema sp. G179 complete prokMSA_id:085243 AJ543428 Treponema putidum strain ATCC 700334 prokMSA_id:064388 AY119692 Treponema denticola prokMSA_id:086665 AY207055 Treponema sp. oral clone P2PB_53 P3 prokMSA_id:092384 AY345159 Treponema genomosp. P2 clone P2PB_60 prokMSA_id:094550 AY369249 Treponema putidum strain OMZ 844 prokMSA_id:003915 D85438 Treponema denticola str. W ATCC 33520. prokMSA_id:003916 L78125 unnamed organism. prokMSA_id:003927 Y08893 Treponema sp. 2.27.3.2.3.012 OTU 8 seqs prokMSA_id:003905 AF023028 Treponema III:A:D24 str. III:A:D24. prokMSA_id:003917 AF056340 Treponema III:B:U8A str. III:B:U8A. prokMSA_id:003918 AF056341 Treponema III:C:BA213 str. III:C:BA213. prokMSA_id:003921 AF182833 Treponema III:F:AT004 str. III:F:AT004. prokMSA_id:003957 AF182835 Treponema 3:G:BB003 str. 3:G:BB003. prokMSA_id:003922 AF182836 Treponema 3:E:AT013 str. 3:E:AT013. prokMSA_id:003923 AF182838 Treponema 3:D:BQ032 str. 3:D:BQ032. prokMSA_id:059569 AY134898 Treponema sp. oral clone EX137 2.27.3.2.3.013 OTU 1 seq prokMSA_id:003906 AF023029 Treponema III:13:D94 str. III:13:D94. 2.27.3.2.3.014 OTU 1 seq prokMSA_id:046681 AF275918 AA14 2.27.3.2.3.015 OTU 1 seq prokMSA_id:047380 AF426100 Treponema calligyrum 2.27.3.2.3.016 OTU 1 seq prokMSA_id:073875 AF426101 Treponema refringens 2.27.3.2.3.999 poor quality 20 seqs prokMSA_id:003936 AF061352 Treponema I:8:3146 str. 3146. prokMSA_id:003901 AF061353 Treponema III:14:298 str. 298. prokMSA_id:003902 AF061354 Treponema III:12:335 str. 335. prokMSA_id:003903 AF061355 Treponema III:12:3143 str. 3143. prokMSA_id:003904 AF068371 Treponema Treponema clone RFS49p. prokMSA_id:003937 AF068456 Treponema Treponema clone CFS169p. prokMSA_id:003948 AF175671 clone WJGRT-210. prokMSA_id:003958 AF182839 Treponema 1:X:3166 str. 1:X:3166. prokMSA_id:003959 AF182840 str. 1:Y:397. prokMSA_id:003960 AF182841 str. 1:3:3105. prokMSA_id:003961 AF182842 str. 1:4:292. prokMSA_id:003924 AF182843 str. 3:13:3138. prokMSA_id:097285 AJ555139 Treponema vincentii prokMSA_id:003928 M57739 Treponema phagedenis str. K5. prokMSA_id:003897 M71236 Treponema denticola str. W ATCC 33520. prokMSA_id:003895 M88725 Spirochaeta zuelzerae ATCC 19044 . prokMSA_id:003900 X97798 Spirochaeta sp. str. DDP9. prokMSA_id:003926 Y08895 Treponema sp. prokMSA_id:003962 Y08896 Treponema sp. prokMSA_id:003925 Y08897 Treponema sp. 2.27.3.2.4 SPI.STENOSTREPTA_SUBGROUP 122 seqs 2.27.3.2.4.001 OTU 5 seqs prokMSA_id:032372 AB032008 Treponema clone HsDiSp320 prokMSA_id:077980 AB088871 Treponema sp. clone:Rs-E37 prokMSA_id:077678 AB088877 Treponema sp. clone:Rs-H41 prokMSA_id:078075 AB088896 Treponema sp. clone:Rs-B05 prokMSA_id:004009 AF093251 Treponema ZAS-1 str. ZAS-1. 2.27.3.2.4.002 OTU 1 seq prokMSA_id:004008 AF157107 clone R5-B26. 2.27.3.2.4.003 OTU 2 seqs prokMSA_id:003980 AB015823 Spirochaeta sp. prokMSA_id:004007 AB015825 Spirochaeta sp. 2.27.3.2.4.004 OTU 2 seqs prokMSA_id:004004 AF068428 Treponema Treponema clone RFS84. prokMSA_id:042498 AJ419822 Spirochaeta sp. clone rs443 2.27.3.2.4.005 OTU 1 seq prokMSA_id:004003 AF068422 Treponema Treponema clone RFS81. 2.27.3.2.4.006 OTU 1 seq prokMSA_id:003984 AF068342 Treponema Treponema clone RFS6. 2.27.3.2.4.008 OTU 1 seq prokMSA_id:003977 AF068431 Treponema Treponema clone RFS1. 2.27.3.2.4.009 OTU 1 seq prokMSA_id:003976 AF068417 Treponema Treponema clone RFS59. 2.27.3.2.4.010 OTU 1 seq prokMSA_id:003969 AF068339 Treponema Treponema clone RFS29. 2.27.3.2.4.011 OTU 1 seq prokMSA_id:003968 AF050551 clone WCHB1-30. 2.27.3.2.4.015 OTU 7 seqs prokMSA_id:003966 AF050549 clone WCHB1-40. prokMSA_id:003967 AF050550 clone WCHB1-91. prokMSA_id:003979 AJ009499 clone SJA-168. prokMSA_id:059907 AY133086 spirochete clone ccslm2126 prokMSA_id:081100 AY214182 clone ZZ12C6 prokMSA_id:086033 AY228701 clone SSE9 prokMSA_id:086597 AY231330 clone ER2_5 2.27.3.2.4.016 OTU 7 seqs prokMSA_id:073662 AB085004 spirochete clone: NkS43 prokMSA_id:070662 AB085015 spirochete clone: NkS60 prokMSA_id:070375 AB085017 spirochete clone: NkS62 prokMSA_id:069474 AB085078 spirochete clone: NkS2-36 prokMSA_id:070765 AB085081 spirochete clone: NkS2-39 prokMSA_id:069719 AB085083 spirochete clone: NkS2-41 prokMSA_id:069062 AB085098 spirochete clone: NkS2-56 2.27.3.2.4.017 OTU 2 seqs prokMSA_id:020160 AJ408202 equine intestinal sp. MW15 clone MW15 prokMSA_id:025326 AJ408258 equine intestinal sp. PW12 clone PW12 2.27.3.2.4.018 OTU 1 seq prokMSA_id:069706 AB084982 spirochete clone: NkS16 2.27.3.2.4.019 OTU 1 seq prokMSA_id:069240 AB084986 spirochete clone: NkS22 2.27.3.2.4.020 OTU 1 seq prokMSA_id:033187 AF427957 clone 7E 2.27.3.2.4.021 OTU 1 seq prokMSA_id:069742 AB085046 spirochete clone: NkS2-2 2.27.3.2.4.022 OTU 1 seq prokMSA_id:069225 AB085110 spirochete clone: NkS2-69 2.27.3.2.4.023 OTU 1 seq prokMSA_id:069196 AB084983 spirochete clone: NkS17 2.27.3.2.4.024 OTU 2 seqs prokMSA_id:072002 AB085058 spirochete clone: NkS2-16 prokMSA_id:069138 AB085117 spirochete clone: NkS2-78 2.27.3.2.4.025 OTU 1 seq prokMSA_id:046398 AB062834 clone:BCf6-24 2.27.3.2.4.026 OTU 1 seq prokMSA_id:069517 AB085106 spirochete clone: NkS2-65 2.27.3.2.4.027 OTU 1 seq prokMSA_id:051498 AJ419819 Spirochaeta sp. clone nc5 2.27.3.2.4.028 OTU 2 seqs prokMSA_id:072955 AB085057 spirochete clone: NkS2-15 prokMSA_id:055540 AB085108 spirochete clone: NkS2-67 2.27.3.2.4.029 OTU 3 seqs prokMSA_id:069436 AB085003 spirochete clone: NkS42 prokMSA_id:069258 AB085019 spirochete clone: NkS64 prokMSA_id:069214 AB085032 spirochete clone: NkS79 2.27.3.2.4.030 OTU 1 seq prokMSA_id:063291 AF523928 clone RCP1-96 2.27.3.2.4.031 OTU 2 seqs prokMSA_id:071032 AB085021 spirochete clone: NkS66 prokMSA_id:072057 AB085072 spirochete clone: NkS2-30 2.27.3.2.4.032 OTU 1 seq prokMSA_id:073799 AB085018 spirochete clone: NkS63 2.27.3.2.4.033 OTU 1 seq prokMSA_id:073922 AB084961 spirochete clone: NkS34 2.27.3.2.4.034 OTU 1 seq prokMSA_id:078032 AB088916 Treponema sp. clone:Rs-Q68 2.27.3.2.4.035 OTU 1 seq prokMSA_id:078058 AB088890 Treponema sp. clone:Rs-C47 2.27.3.2.4.036 OTU 1 seq prokMSA_id:078066 AB088895 Treponema sp. clone:Rs-A53 2.27.3.2.4.037 OTU 1 seq prokMSA_id:088559 AY327231 clone ZB40 2.27.3.2.4.038 OTU 1 seq prokMSA_id:089067 AY327229 clone ZB37 2.27.3.2.4.039 OTU 1 seq prokMSA_id:090171 AY327230 clone ZB39 2.27.3.2.4.040 OTU 1 seq prokMSA_id:091461 AY340818 clone SR_FBR_E2 2.27.3.2.4.999 poor quality 62 seqs prokMSA_id:069460 AB085034 spirochete clone: NkS81 prokMSA_id:071540 AB085049 spirochete clone: NkS2-7 prokMSA_id:069344 AB085076 spirochete clone: NkS2-34 prokMSA_id:070165 AB085091 spirochete clone: NkS2-49 prokMSA_id:069172 AB085150 spirochete clone: NkS2-29lh prokMSA_id:003985 AF068348 Treponema Treponema clone RFS100p. prokMSA_id:003986 AF068352 Treponema Treponema clone RFS106p. prokMSA_id:003987 AF068355 Treponema Treponema clone RFS22p. prokMSA_id:003988 AF068356 Treponema Treponema clone RFS26p. prokMSA_id:003989 AF068361 Treponema Treponema clone RFS32p. prokMSA_id:003990 AF068362 Treponema Treponema clone RFS34p. prokMSA_id:003991 AF068363 Treponema Treponema clone RFS35p. prokMSA_id:003992 AF068364 Treponema Treponema clone RFS37p. prokMSA_id:003993 AF068366 Treponema Treponema clone RFS42p. prokMSA_id:003970 AF068367 Treponema Treponema clone RFS44p. prokMSA_id:003994 AF068372 Treponema Treponema clone RFS50p. prokMSA_id:003995 AF068375 Treponema Treponema clone RFS54p. prokMSA_id:003996 AF068381 Treponema Treponema clone RFS67p. prokMSA_id:003971 AF068382 Treponema Treponema clone RFS69p. prokMSA_id:003997 AF068384 Treponema Treponema clone RFS71p. prokMSA_id:003972 AF068387 Treponema Treponema clone RFS74p. prokMSA_id:003973 AF068391 Treponema Treponema clone RFS79p. prokMSA_id:023421 AF068395 Treponema clone RFS86p small subunit rrn prokMSA_id:003974 AF068396 Treponema Treponema clone RFS87p. prokMSA_id:018781 AF068399 Treponema clone RFS91p small subunit rrn prokMSA_id:049389 AF068401 Treponema clone RFS95p small subunit rrn prokMSA_id:003975 AF068402 Treponema Treponema clone RFS96p. prokMSA_id:003998 AF068403 Treponema Treponema clone RFS97p. prokMSA_id:003999 AF068408 Treponema Treponema clone RFS4p. prokMSA_id:004000 AF068410 Treponema Treponema clone RFS17p. prokMSA_id:004001 AF068412 Treponema Treponema clone RFS20p. prokMSA_id:004002 AF068414 Treponema Treponema clone RFS33p. prokMSA_id:003978 AF068442 Treponema Treponema clone CFS142p. prokMSA_id:004005 AF068450 Treponema Treponema clone CFS155p. prokMSA_id:004006 AF068457 Treponema Treponema clone CFS192p. prokMSA_id:004010 AF149878 str. 05.95.44. prokMSA_id:004011 AF149879 str. 05.96.56. prokMSA_id:004012 AF149880 str. 05.95.60. prokMSA_id:003982 AF149881 str. 05.95.4. prokMSA_id:004013 AF149882 str. 05.95.36. prokMSA_id:019394 AF218220 clone HSI prokMSA_id:028481 AF218221 clone HSII prokMSA_id:054195 AF289918 Spirochetes Kmlps6-30 prokMSA_id:040454 AF339859 clone S prokMSA_id:038473 AF427930 clone 12F prokMSA_id:052337 AF427941 clone 7D prokMSA_id:043543 AF447129 clone TDC-4127 prokMSA_id:048388 AJ287071 spirochete Im410 prokMSA_id:034706 AJ287073 spirochete Im446 prokMSA_id:026523 AJ287075 spirochete Im455 prokMSA_id:069618 AJ287076 spirochete Im515 prokMSA_id:041422 AJ287081 spirochete Kf413 prokMSA_id:042131 AJ287104 spirochete Nn415 prokMSA_id:029891 AJ287129 spirochete Rsa526 prokMSA_id:056870 AJ518732 clone Sai4P3-55 prokMSA_id:026380 AY050177 spirochete clone SRB-6 prokMSA_id:085072 AY092387 clone BF177 prokMSA_id:084545 AY092388 clone BF93 prokMSA_id:088483 AY327232 clone ZB41 prokMSA_id:003983 M71240 Treponema sp. str. H1 Leschine. prokMSA_id:003965 M88724 Spirochaeta stenostrepta str. Z1 ATCC 25083 . prokMSA_id:003981 U81708 clone vadinBE82. 2.27.3.2.5 SPI.SPMAST_SUBGROUP 50 seqs 2.27.3.2.5.001 OTU 1 seq prokMSA_id:004027 AF068418 Treponema Treponema clone RFS60. 2.27.3.2.5.002 OTU 2 seqs prokMSA_id:004015 X79548 Spirochaeta sp. prokMSA_id:004024 X89043 str. sp5-17. 2.27.3.2.5.003 OTU 1 seq prokMSA_id:021434 AB062768 Treponema sp. clone:BCf1-01 2.27.3.2.5.004 OTU 4 seqs prokMSA_id:069247 AB084953 spirochete clone: NkS4 prokMSA_id:072109 AB085159 spirochete clone: NkS-Dev14 prokMSA_id:069670 AB085161 spirochete clone: NkS-Ste2 prokMSA_id:073183 AB085168 spirochete clone: NkS-Oxy70 2.27.3.2.5.005 OTU 1 seq prokMSA_id:077955 AB088898 Treponema sp. clone:Rs-E91 2.27.3.2.5.006 OTU 2 seqs prokMSA_id:078252 AB088875 Treponema sp. clone:Rs-J42 prokMSA_id:078017 AB088915 Treponema sp. clone:Rs-Q13 2.27.3.2.5.999 poor quality 39 seqs prokMSA_id:069487 AB085148 spirochete clone: NkS2-27lh prokMSA_id:004025 AF068370 Treponema Treponema clone RFS48p. prokMSA_id:004026 AF068392 Treponema Treponema clone RFS80p. prokMSA_id:004028 AF068440 Treponema Treponema clone CFS122p. prokMSA_id:004029 AF068443 Treponema Treponema clone CFS4p. prokMSA_id:004030 AF068446 Treponema Treponema clone CFS3p. prokMSA_id:004016 AJ270184 clone Hm3. prokMSA_id:004017 AJ270186 clone Hm5. prokMSA_id:004018 AJ270187 clone Hm6. prokMSA_id:004019 AJ270188 clone Hm7. prokMSA_id:004020 AJ270193 clone Hm14. prokMSA_id:004021 AJ270196 clone Hm25. prokMSA_id:004022 AJ270197 clone Hm28. prokMSA_id:004023 AJ270199 clone Hm40. prokMSA_id:051541 AJ287068 spirochete Im403 prokMSA_id:042399 AJ287069 spirochete Im404 prokMSA_id:025838 AJ287072 spirochete Im411 prokMSA_id:024294 AJ287078 spirochete Kf401 prokMSA_id:030336 AJ287079 spirochete Kf406 prokMSA_id:025945 AJ287080 spirochete Kf410 prokMSA_id:028049 AJ287082 spirochete Kf414 prokMSA_id:047932 AJ287083 spirochete Kf421 prokMSA_id:048823 AJ287084 spirochete Kf422 prokMSA_id:052470 AJ287085 spirochete Kf427 prokMSA_id:034726 AJ287086 spirochete Kf428 prokMSA_id:049450 AJ287087 spirochete Kf438 prokMSA_id:045649 AJ287088 spirochete Kf441 prokMSA_id:040940 AJ287089 spirochete Kf448 prokMSA_id:046077 AJ287090 spirochete Kf449 prokMSA_id:074481 AJ287092 spirochete Kf612 prokMSA_id:069565 AJ287093 spirochete Kf614 prokMSA_id:017975 AJ287094 spirochete Kf625 prokMSA_id:069778 AJ287095 spirochete Kf645 prokMSA_id:033661 AJ287103 spirochete Nn411 prokMSA_id:044892 AJ287113 spirochete Nc5 prokMSA_id:030480 AJ287117 spirochete Nc26 prokMSA_id:069188 AJ287119 spirochete Nc40 prokMSA_id:073636 AJ287127 spirochete Rsa443 prokMSA_id:004014 X91479 AEspoe hard rock 10-626m below ground surface clone A56n. 2.27.3.2.6 STR.MPSP16_SUBGROUP 383 seqs 2.27.3.2.6.001 OTU 5 seqs prokMSA_id:033875 AF275929 AC31 prokMSA_id:004131 AJ009476 clone SJA-69. prokMSA_id:004056 AJ009481 clone SJA-102. prokMSA_id:004132 AJ009506 clone SJA-182. prokMSA_id:091571 AY340825 clone SR_FBR_E32 2.27.3.2.6.002 OTU 1 seq prokMSA_id:004127 AF068426 Treponema Treponema clone RFS18. 2.27.3.2.6.003 OTU 3 seqs prokMSA_id:078047 AB088881 Treponema sp. clone:Rs-D57 prokMSA_id:004126 AF068424 Treponema Treponema clone RFS99. prokMSA_id:071536 D63638 Spirochetes clone UN90 2.27.3.2.6.004 OTU 1 seq prokMSA_id:004125 AF068419 Treponema Treponema clone RFS64. 2.27.3.2.6.005 OTU 1 seq prokMSA_id:004118 AF068347 Treponema Treponema clone CFS121. 2.27.3.2.6.006 OTU 3 seqs prokMSA_id:035727 AB062816 clone:BCf3-09 prokMSA_id:047692 AB062829 clone:BCf5-23 prokMSA_id:004117 AF068346 Treponema Treponema clone CFS124. 2.27.3.2.6.007 OTU 2 seqs prokMSA_id:077632 AB088906 Treponema sp. clone:Rs-C32 prokMSA_id:004116 AF068336 Treponema Treponema clone RFS15. 2.27.3.2.6.008 OTU 1 seq prokMSA_id:004115 X89046 str. sp40-7. 2.27.3.2.6.011 OTU 1 seq prokMSA_id:004098 AF068416 Treponema Treponema clone RFS52. 2.27.3.2.6.012 OTU 1 seq prokMSA_id:004097 AF068415 Treponema Treponema clone RFS102. 2.27.3.2.6.017 OTU 1 seq prokMSA_id:004083 X89048 str. sp40-11. 2.27.3.2.6.018 OTU 2 seqs prokMSA_id:004076 X89042 str. sp5-9. prokMSA_id:004082 X89052 str. mpsp16. 2.27.3.2.6.019 OTU 1 seq prokMSA_id:004080 X89047 str. sp40-8. 2.27.3.2.6.021 OTU 1 seq prokMSA_id:004071 AB015834 Spirochaeta sp. 2.27.3.2.6.023 OTU 1 seq prokMSA_id:004069 AB015832 Spirochaeta sp. 2.27.3.2.6.024 OTU 1 seq prokMSA_id:004068 AB015831 Spirochaeta sp. 2.27.3.2.6.027 OTU 1 seq prokMSA_id:004067 AB015829 Spirochaeta sp. 2.27.3.2.6.028 OTU 1 seq prokMSA_id:004065 AB015821 Spirochaeta sp. 2.27.3.2.6.030 OTU 1 seq prokMSA_id:004063 AB015818 Spirochaeta sp. 2.27.3.2.6.031 OTU 1 seq prokMSA_id:004062 AB015817 Spirochaeta sp. 2.27.3.2.6.032 OTU 1 seq prokMSA_id:004061 AB015816 Spirochaeta sp. 2.27.3.2.6.034 OTU 2 seqs prokMSA_id:004057 AB015806 Spirochaeta sp. prokMSA_id:004039 AB015810 Spirochaeta sp. 2.27.3.2.6.038 OTU 1 seq prokMSA_id:004049 AF068345 Treponema Treponema clone CFS6. 2.27.3.2.6.039 OTU 1 seq prokMSA_id:004048 AF068344 Treponema Treponema clone RFS88. 2.27.3.2.6.042 OTU 1 seq prokMSA_id:004045 AB008905 clone Cd46. 2.27.3.2.6.043 OTU 1 seq prokMSA_id:004044 AB008904 clone Cd3. 2.27.3.2.6.044 OTU 1 seq prokMSA_id:004043 X89050 str. mpsp2. 2.27.3.2.6.045 OTU 1 seq prokMSA_id:004041 AB015814 Spirochaeta sp. 2.27.3.2.6.046 OTU 1 seq prokMSA_id:004040 AB015811 Spirochaeta sp. 2.27.3.2.6.047 OTU 1 seq prokMSA_id:004038 X89044 str. sp5-18. 2.27.3.2.6.048 OTU 1 seq prokMSA_id:004032 X89051 str. mpsp15. 2.27.3.2.6.051 OTU 4 seqs prokMSA_id:016871 AB062806 clone:BCf10-21 prokMSA_id:036150 AB062808 clone:BCf11-05 prokMSA_id:025068 AB062825 clone:BCf5-01 prokMSA_id:017555 AB062843 clone:BCf9-08 2.27.3.2.6.052 OTU 2 seqs prokMSA_id:069068 AB084984 spirochete clone: NkS18 prokMSA_id:072922 AB084985 spirochete clone: NkS20 2.27.3.2.6.055 OTU 15 seqs prokMSA_id:069104 AB084960 spirochete clone: NkS21 prokMSA_id:069077 AB084994 spirochete clone: NkS30 prokMSA_id:069184 AB085001 spirochete clone: NkS40 prokMSA_id:071405 AB085002 spirochete clone: NkS41 prokMSA_id:070115 AB085005 spirochete clone: NkS44 prokMSA_id:071689 AB085007 spirochete clone: NkS46 prokMSA_id:056584 AB085016 spirochete clone: NkS61 prokMSA_id:073783 AB085028 spirochete clone: NkS74 prokMSA_id:055855 AB085030 spirochete clone: NkS76 prokMSA_id:069653 AB085040 spirochete clone: NkS89 prokMSA_id:071122 AB085041 spirochete clone: NkS90 prokMSA_id:069289 AB085054 spirochete clone: NkS2-12 prokMSA_id:069489 AB085063 spirochete clone: NkS2-21 prokMSA_id:073427 AB085094 spirochete clone: NkS2-52 prokMSA_id:069563 AB085165 spirochete clone: NkS-Oxy8 2.27.3.2.6.056 OTU 2 seqs prokMSA_id:069779 AB084957 spirochete clone: NkS9 prokMSA_id:069238 AB085166 spirochete clone: NkS-Oxy25 2.27.3.2.6.057 OTU 1 seq prokMSA_id:022449 AJ419816 Spirochaeta sp. clone kf428 2.27.3.2.6.058 OTU 1 seq prokMSA_id:069313 AB085047 spirochete clone: NkS2-5 2.27.3.2.6.059 OTU 9 seqs prokMSA_id:073357 AB084976 spirochete clone: NkS6 prokMSA_id:069053 AB084978 spirochete clone: NkS11 prokMSA_id:069644 AB084990 spirochete clone: NkS26 prokMSA_id:074493 AB085022 spirochete clone: NkS67 prokMSA_id:069349 AB085069 spirochete clone: NkS2-27 prokMSA_id:069440 AB085090 spirochete clone: NkS2-48 prokMSA_id:071288 AB085093 spirochete clone: NkS2-51 prokMSA_id:073881 AB085107 spirochete clone: NkS2-66 prokMSA_id:069597 AB085135 spirochete clone: NkS2-96 2.27.3.2.6.060 OTU 2 seqs prokMSA_id:071132 AB085109 spirochete clone: NkS2-68 prokMSA_id:055401 AB085126 spirochete clone: NkS2-87 2.27.3.2.6.062 OTU 1 seq prokMSA_id:069132 AB084980 spirochete clone: NkS13 2.27.3.2.6.063 OTU 4 seqs prokMSA_id:074527 AB084972 spirochete clone: NkS95 prokMSA_id:070454 AB085035 spirochete clone: NkS82 prokMSA_id:069512 AB085065 spirochete clone: NkS2-23 prokMSA_id:070740 AB085087 spirochete clone: NkS2-45 2.27.3.2.6.066 OTU 1 seq prokMSA_id:025824 AB032009 Treponema clone HsDiSp319 2.27.3.2.6.067 OTU 4 seqs prokMSA_id:074426 AB084965 spirochete clone: NkS50 prokMSA_id:072764 AB085027 spirochete clone: NkS72 prokMSA_id:069423 AB085038 spirochete clone: NkS87 prokMSA_id:069392 AB085067 spirochete clone: NkS2-25 2.27.3.2.6.068 OTU 1 seq prokMSA_id:027323 AB062839 clone:BCf7-24 2.27.3.2.6.069 OTU 1 seq prokMSA_id:069634 AB084993 spirochete clone: NkS29 2.27.3.2.6.070 OTU 1 seq prokMSA_id:027500 AJ419824 Spirochaeta sp. clone kf612 2.27.3.2.6.072 OTU 4 seqs prokMSA_id:004078 AB015830 Spirochaeta sp. prokMSA_id:072221 AB084959 spirochete clone: NkS19 prokMSA_id:069529 AB085053 spirochete clone: NkS2-11 prokMSA_id:072460 AB085121 spirochete clone: NkS2-82 2.27.3.2.6.073 OTU 3 seqs prokMSA_id:069510 AB084955 spirochete clone: NkS7 prokMSA_id:072599 AB085012 spirochete clone: NkS57 prokMSA_id:070832 AB085099 spirochete clone: NkS2-57 2.27.3.2.6.074 OTU 1 seq prokMSA_id:069417 AB085055 spirochete clone: NkS2-13 2.27.3.2.6.075 OTU 3 seqs prokMSA_id:056589 AB084963 spirochete clone: NkS39 prokMSA_id:069686 AB085039 spirochete clone: NkS88 prokMSA_id:071094 AB085068 spirochete clone: NkS2-26 2.27.3.2.6.077 OTU 1 seq prokMSA_id:030346 AJ419817 Spirochaeta sp. clone nc26 2.27.3.2.6.078 OTU 1 seq prokMSA_id:031994 AB062832 clone:BCf6-15 2.27.3.2.6.081 OTU 1 seq prokMSA_id:035642 AB062846 clone:BCf9-14 2.27.3.2.6.084 OTU 1 seq prokMSA_id:038586 AB062840 clone:BCf8-03 2.27.3.2.6.087 OTU 1 seq prokMSA_id:040667 AJ419821 Spirochaeta sp. clone rs438 2.27.3.2.6.091 OTU 1 seq prokMSA_id:069615 AB085088 spirochete clone: NkS2-46 2.27.3.2.6.092 OTU 2 seqs prokMSA_id:069666 AB085082 spirochete clone: NkS2-40 prokMSA_id:070117 AB085163 spirochete clone: NkS-Oxy1 2.27.3.2.6.093 OTU 1 seq prokMSA_id:069269 AB085128 spirochete clone: NkS2-89 2.27.3.2.6.095 OTU 8 seqs prokMSA_id:069324 AB084970 spirochete clone: NkS93 prokMSA_id:072744 AB085064 spirochete clone: NkS2-22 prokMSA_id:069125 AB085101 spirochete clone: NkS2-60 prokMSA_id:069150 AB085118 spirochete clone: NkS2-79 prokMSA_id:072963 AB085158 spirochete clone: NkS-Dev1 prokMSA_id:069390 AB085160 spirochete clone: NkS-Ste1 prokMSA_id:040147 AJ420234 Spirochaeta sp. kf401 prokMSA_id:073673 D63597 Spirochetes clone UN114 2.27.3.2.6.096 OTU 1 seq prokMSA_id:048891 AB062823 clone:BCf4-14 2.27.3.2.6.097 OTU 1 seq prokMSA_id:049320 AF211327 spirochete MT54 2.27.3.2.6.098 OTU 2 seqs prokMSA_id:071041 AB084991 spirochete clone: NkS27 prokMSA_id:069107 AB085010 spirochete clone: NkS52 2.27.3.2.6.099 OTU 1 seq prokMSA_id:072868 AB084998 spirochete clone: NkS35 2.27.3.2.6.100 OTU 3 seqs prokMSA_id:059914 AY133079 spirochete clone ccslm226 prokMSA_id:059910 AY133081 spirochete clone ccslm209 prokMSA_id:091429 AY340839 clone SR_FBR_L44 2.27.3.2.6.101 OTU 2 seqs prokMSA_id:069052 AB084997 spirochete clone: NkS33 prokMSA_id:072490 AB085042 spirochete clone: NkS91 2.27.3.2.6.102 OTU 1 seq prokMSA_id:069543 AB084968 spirochete clone: NkS83 2.27.3.2.6.103 OTU 1 seq prokMSA_id:070448 AB085045 spirochete clone: NkS2-1 2.27.3.2.6.104 OTU 1 seq prokMSA_id:070661 AB085024 spirochete clone: NkS69 2.27.3.2.6.106 OTU 1 seq prokMSA_id:070745 AB085102 spirochete clone: NkS2-61 2.27.3.2.6.107 OTU 1 seq prokMSA_id:071445 AB085061 spirochete clone: NkS2-19 2.27.3.2.6.110 OTU 1 seq prokMSA_id:077621 AB088891 Treponema sp. clone:Rs-B29 2.27.3.2.6.111 OTU 2 seqs prokMSA_id:077780 AB088863 Treponema sp. clone:Rs-H91 prokMSA_id:077792 AB088868 Treponema sp. clone:Rs-B94 2.27.3.2.6.112 OTU 1 seq prokMSA_id:078014 AB088865 Treponema sp. clone:Rs-D46 2.27.3.2.6.113 OTU 1 seq prokMSA_id:078084 AB088889 Treponema sp. clone:Rs-D43 2.27.3.2.6.114 OTU 1 seq prokMSA_id:078105 AB088866 Treponema sp. clone:Rs-D52 2.27.3.2.6.115 OTU 1 seq prokMSA_id:078179 AB088901 Treponema sp. clone:Rs-C91 2.27.3.2.6.117 OTU 136 seqs prokMSA_id:004046 AB008906 clone Cd48. prokMSA_id:004058 AB015812 Spirochaeta sp. prokMSA_id:004059 AB015813 Spirochaeta sp. prokMSA_id:004060 AB015815 Spirochaeta sp. prokMSA_id:004064 AB015819 Spirochaeta sp. prokMSA_id:004113 AB015822 Spirochaeta sp. prokMSA_id:004066 AB015828 Spirochaeta sp. prokMSA_id:004070 AB015833 Spirochaeta sp. prokMSA_id:029732 AB032006 Treponema clone RsDiSp8 prokMSA_id:024078 AB032007 Treponema clone HsPySp4 prokMSA_id:069074 AB084952 spirochete clone: NkS1 prokMSA_id:074331 AB084954 spirochete clone: NkS5 prokMSA_id:073924 AB084956 spirochete clone: NkS8 prokMSA_id:069426 AB084958 spirochete clone: NkS15 prokMSA_id:071891 AB084962 spirochete clone: NkS37 prokMSA_id:072131 AB084964 spirochete clone: NkS49 prokMSA_id:071676 AB084966 spirochete clone: NkS53 prokMSA_id:069148 AB084967 spirochete clone: NkS56 prokMSA_id:070817 AB084969 spirochete clone: NkS85 prokMSA_id:071442 AB084971 spirochete clone: NkS94 prokMSA_id:073490 AB084973 spirochete clone: NkS97 prokMSA_id:074121 AB084974 spirochete clone: NkS2 prokMSA_id:073472 AB084977 spirochete clone: NkS10 prokMSA_id:069594 AB084979 spirochete clone: NkS12 prokMSA_id:069754 AB084981 spirochete clone: NkS14 prokMSA_id:055474 AB084988 spirochete clone: NkS24 prokMSA_id:069129 AB084989 spirochete clone: NkS25 prokMSA_id:069728 AB084992 spirochete clone: NkS28 prokMSA_id:069497 AB084995 spirochete clone: NkS31 prokMSA_id:069628 AB084996 spirochete clone: NkS32 prokMSA_id:055572 AB084999 spirochete clone: NkS36 prokMSA_id:070618 AB085000 spirochete clone: NkS38 prokMSA_id:069665 AB085006 spirochete clone: NkS45 prokMSA_id:071466 AB085008 spirochete clone: NkS47 prokMSA_id:070766 AB085009 spirochete clone: NkS51 prokMSA_id:072787 AB085011 spirochete clone: NkS55 prokMSA_id:071490 AB085014 spirochete clone: NkS59 prokMSA_id:071197 AB085020 spirochete clone: NkS65 prokMSA_id:069864 AB085026 spirochete clone: NkS71 prokMSA_id:069511 AB085029 spirochete clone: NkS75 prokMSA_id:069158 AB085031 spirochete clone: NkS78 prokMSA_id:073908 AB085036 spirochete clone: NkS84 prokMSA_id:056306 AB085037 spirochete clone: NkS86 prokMSA_id:072317 AB085043 spirochete clone: NkS92 prokMSA_id:069461 AB085048 spirochete clone: NkS2-6 prokMSA_id:069528 AB085050 spirochete clone: NkS2-8 prokMSA_id:073763 AB085051 spirochete clone: NkS2-9 prokMSA_id:069625 AB085052 spirochete clone: NkS2-10 prokMSA_id:073149 AB085059 spirochete clone: NkS2-17 prokMSA_id:073105 AB085060 spirochete clone: NkS2-18 prokMSA_id:074085 AB085070 spirochete clone: NkS2-28 prokMSA_id:056408 AB085071 spirochete clone: NkS2-29 prokMSA_id:069722 AB085074 spirochete clone: NkS2-32 prokMSA_id:069767 AB085075 spirochete clone: NkS2-33 prokMSA_id:074033 AB085077 spirochete clone: NkS2-35 prokMSA_id:073886 AB085079 spirochete clone: NkS2-37 prokMSA_id:069395 AB085084 spirochete clone: NkS2-42 prokMSA_id:072634 AB085085 spirochete clone: NkS2-43 prokMSA_id:074311 AB085086 spirochete clone: NkS2-44 prokMSA_id:069572 AB085089 spirochete clone: NkS2-47 prokMSA_id:069654 AB085095 spirochete clone: NkS2-53 prokMSA_id:071363 AB085096 spirochete clone: NkS2-54 prokMSA_id:072111 AB085100 spirochete clone: NkS2-59 prokMSA_id:069249 AB085103 spirochete clone: NkS2-62 prokMSA_id:070937 AB085104 spirochete clone: NkS2-63 prokMSA_id:072091 AB085105 spirochete clone: NkS2-64 prokMSA_id:072285 AB085111 spirochete clone: NkS2-70 prokMSA_id:069709 AB085112 spirochete clone: NkS2-72 prokMSA_id:073785 AB085113 spirochete clone: NkS2-73 prokMSA_id:056433 AB085114 spirochete clone: NkS2-75 prokMSA_id:069253 AB085115 spirochete clone: NkS2-76 prokMSA_id:069338 AB085116 spirochete clone: NkS2-77 prokMSA_id:069210 AB085119 spirochete clone: NkS2-80 prokMSA_id:071995 AB085120 spirochete clone: NkS2-81 prokMSA_id:069154 AB085123 spirochete clone: NkS2-84 prokMSA_id:069532 AB085124 spirochete clone: NkS2-85 prokMSA_id:069294 AB085125 spirochete clone: NkS2-86 prokMSA_id:073737 AB085127 spirochete clone: NkS2-88 prokMSA_id:069676 AB085130 spirochete clone: NkS2-91 prokMSA_id:069147 AB085131 spirochete clone: NkS2-92 prokMSA_id:069265 AB085133 spirochete clone: NkS2-94 prokMSA_id:069378 AB085134 spirochete clone: NkS2-95 prokMSA_id:069311 AB085162 spirochete clone: NkS-Ste9 prokMSA_id:070909 AB085164 spirochete clone: NkS-Oxy3 prokMSA_id:069619 AB085167 spirochete clone: NkS-Oxy26 prokMSA_id:078076 AB088857 Treponema sp. clone:Rs-D73 prokMSA_id:077759 AB088861 Treponema sp. clone:Rs-H62 prokMSA_id:077733 AB088862 Treponema sp. clone:Rs-G43 prokMSA_id:077775 AB088864 Treponema sp. clone:Rs-E15 prokMSA_id:078272 AB088867 Treponema sp. clone:Rs-D96 prokMSA_id:077606 AB088869 Treponema sp. clone:Rs-C35 prokMSA_id:077811 AB088870 Treponema sp. clone:Rs-D01 prokMSA_id:078155 AB088872 Treponema sp. clone:Rs-H84 prokMSA_id:077582 AB088874 Treponema sp. clone:Rs-D40 prokMSA_id:078117 AB088876 Treponema sp. clone:Rs-F60 prokMSA_id:077905 AB088878 Treponema sp. clone:Rs-E03 prokMSA_id:077778 AB088879 Treponema sp. clone:Rs-A77 prokMSA_id:077953 AB088880 Treponema sp. clone:Rs-B10 prokMSA_id:077600 AB088882 Treponema sp. clone:Rs-P25 prokMSA_id:078119 AB088885 Treponema sp. clone:Rs-G28 prokMSA_id:077686 AB088886 Treponema sp. clone:Rs-D47 prokMSA_id:078381 AB088887 Treponema sp. clone:Rs-D53 prokMSA_id:077749 AB088888 Treponema sp. clone:Rs-E64 prokMSA_id:077700 AB088892 Treponema sp. clone:Rs-A16 prokMSA_id:077677 AB088893 Treponema sp. clone:Rs-E18 prokMSA_id:078213 AB088894 Treponema sp. clone:Rs-A19 prokMSA_id:078244 AB088899 Treponema sp. clone:Rs-J54 prokMSA_id:077591 AB088900 Treponema sp. clone:Rs-Q78 prokMSA_id:077948 AB088903 Treponema sp. clone:Rs-E21 prokMSA_id:077877 AB088905 Treponema sp. clone:Rs-A09 prokMSA_id:077997 AB088907 Treponema sp. clone:Rs-B69 prokMSA_id:078092 AB088908 Treponema sp. clone:Rs-D13 prokMSA_id:077925 AB088909 Treponema sp. clone:Rs-E44 prokMSA_id:078206 AB088911 Treponema sp. clone:Rs-J58 prokMSA_id:078395 AB088912 Treponema sp. clone:Rs-J64 prokMSA_id:078296 AB088913 Treponema sp. clone:Rs-J93 prokMSA_id:077647 AB088914 Treponema sp. clone:Rs-P59 prokMSA_id:004047 AF068334 Treponema Treponema clone RFS11. prokMSA_id:004084 AF068337 Treponema Treponema clone RFS25. prokMSA_id:004085 AF068338 Treponema Treponema clone RFS21. prokMSA_id:004086 AF068340 Treponema Treponema clone RFS3. prokMSA_id:004087 AF068341 Treponema Treponema clone RFS41. prokMSA_id:004088 AF068343 Treponema Treponema clone RFS8. prokMSA_id:004094 AF068405 Treponema Treponema clone ZAS89. prokMSA_id:004099 AF068420 Treponema Treponema clone RFS7. prokMSA_id:004100 AF068421 Treponema Treponema clone RFS75. prokMSA_id:004053 AF068423 Treponema Treponema clone RFS94. prokMSA_id:004101 AF068427 Treponema Treponema clone RFS82. prokMSA_id:004114 AF093252 Treponema ZAS-2 str. ZAS-2. prokMSA_id:023660 AF320287 Treponema sp. ZAS-9 prokMSA_id:044787 AJ419818 Spirochaeta sp. clone nc40 prokMSA_id:044741 AJ419820 Spirochaeta sp. clone rs402 prokMSA_id:096103 AY160869 clone COB P4-2 prokMSA_id:071594 D63587 Spirochetes clone UN1 prokMSA_id:070716 D63606 Spirochetes clone UN21 prokMSA_id:073527 D63641 Spirochetes clone UN96 2.27.3.2.6.118 OTU 1 seq prokMSA_id:078281 AB088902 Treponema sp. clone:Rs-C15 2.27.3.2.6.119 OTU 1 seq prokMSA_id:083413 AJ458945 Spirochete symbiont of Mixotricha paradoxa clone mp3 2.27.3.2.6.120 OTU 1 seq prokMSA_id:083652 AJ458944 Spirochete symbiont of Mixotricha paradoxa clone mp1 2.27.3.2.6.121 OTU 1 seq prokMSA_id:085528 AY231310 clone ER1_10 2.27.3.2.6.122 OTU 1 seq prokMSA_id:086557 AJ458946 Spirochete symbiont of Mixotricha paradoxa clone mp4 2.27.3.2.6.123 OTU 1 seq prokMSA_id:095452 AY160870 clone COB P4-15 2.27.3.2.6.124 OTU 1 seq prokMSA_id:095796 AY160872 clone COB P3-9 2.27.3.2.6.125 OTU 1 seq prokMSA_id:098286 AY160871 clone COB P3-22 2.27.3.2.6.999 poor quality 98 seqs prokMSA_id:020999 AB047119 OCG8 prokMSA_id:071010 AB084975 spirochete clone: NkS3 prokMSA_id:069261 AB085013 spirochete clone: NkS58 prokMSA_id:072582 AB085033 spirochete clone: NkS80 prokMSA_id:056175 AB085056 spirochete clone: NkS2-14 prokMSA_id:072611 AB085062 spirochete clone: NkS2-20 prokMSA_id:072220 AB085080 spirochete clone: NkS2-38 prokMSA_id:070969 AB085132 spirochete clone: NkS2-93 prokMSA_id:069443 AB085136 spirochete clone: NkS2-2lh prokMSA_id:069195 AB085137 spirochete clone: NkS2-6lh prokMSA_id:069374 AB085138 spirochete clone: NkS2-7lh prokMSA_id:069753 AB085139 spirochete clone: NkS2-9lh prokMSA_id:069462 AB085140 spirochete clone: NkS2-11lh prokMSA_id:070743 AB085141 spirochete clone: NkS2-12lh prokMSA_id:073387 AB085142 spirochete clone: NkS2-16lh prokMSA_id:069116 AB085144 spirochete clone: NkS2-23lh prokMSA_id:071702 AB085146 spirochete clone: NkS2-25lh prokMSA_id:070000 AB085147 spirochete clone:NkS2-26lh prokMSA_id:069142 AB085149 spirochete clone: NkS2-28lh prokMSA_id:069139 AB085151 spirochete clone: NkS2-30lh prokMSA_id:069522 AB085152 spirochete clone: NkS2-33lh prokMSA_id:069282 AB085153 spirochete clone: NkS2-36lh prokMSA_id:056521 AB085154 spirochete clone: NkS2-37lh prokMSA_id:069796 AB085155 spirochete clone: NkS2-42lh prokMSA_id:055488 AB085156 spirochete clone: NkS2-54lh prokMSA_id:070925 AB085157 spirochete clone: NkS2-57lh prokMSA_id:004119 AF068349 Treponema Treponema clone RFS101p. prokMSA_id:004120 AF068354 Treponema Treponema clone RFS19p. prokMSA_id:004121 AF068357 Treponema Treponema clone RFS27p. prokMSA_id:004122 AF068360 Treponema Treponema clone RFS31p. prokMSA_id:004050 AF068365 Treponema Treponema clone RFS39p. prokMSA_id:004089 AF068374 Treponema Treponema clone RFS53p. prokMSA_id:004090 AF068377 Treponema Treponema clone RFS57p. prokMSA_id:004091 AF068378 Treponema Treponema clone RFS58p. prokMSA_id:004123 AF068379 Treponema Treponema clone RFS61p. prokMSA_id:004124 AF068383 Treponema Treponema clone RFS70p. prokMSA_id:004092 AF068386 Treponema Treponema clone RFS73p. prokMSA_id:041479 AF068394 Treponema clone RFS85p small subunit rrn prokMSA_id:032680 AF068397 Treponema clone RFS89p small subunit rrn prokMSA_id:004093 AF068400 Treponema Treponema clone RFS93p. prokMSA_id:004095 AF068406 Treponema Treponema clone RFS13p. prokMSA_id:004051 AF068407 Treponema Treponema clone RFS14p. prokMSA_id:004096 AF068409 Treponema Treponema clone RFS16p. prokMSA_id:004052 AF068413 Treponema Treponema clone RFS24p. prokMSA_id:004128 AF068433 Treponema Treponema clone RFS29p. prokMSA_id:004102 AF068434 Treponema Treponema clone RFS68p. prokMSA_id:004129 AF068435 Treponema Treponema clone CFS105p. prokMSA_id:004103 AF068436 Treponema Treponema clone CFS110p. prokMSA_id:004104 AF068437 Treponema Treponema clone CFS113p. prokMSA_id:004033 AF068438 Treponema Treponema clone CFS118p. prokMSA_id:004105 AF068439 Treponema Treponema clone CFS7p. prokMSA_id:004054 AF068444 Treponema Treponema clone CFS143p. prokMSA_id:004034 AF068447 Treponema Treponema clone CFS149p. prokMSA_id:004055 AF068448 Treponema Treponema clone CFS2p. prokMSA_id:004106 AF068449 Treponema Treponema clone CFS14p. prokMSA_id:004107 AF068451 Treponema Treponema clone CFS156p. prokMSA_id:004108 AF068452 Treponema Treponema clone CFS163p. prokMSA_id:004109 AF068453 Treponema Treponema clone CFS199p. prokMSA_id:004077 AF068454 Treponema Treponema clone CFS167p. prokMSA_id:004110 AF068455 Treponema Treponema clone CFS195p. prokMSA_id:004130 AF068458 Treponema Treponema clone CFS170p. prokMSA_id:004111 AF068459 Treponema Treponema clone CFS188p. prokMSA_id:004035 AF068460 Treponema Treponema clone CFS178p. prokMSA_id:004036 AF068461 Treponema Treponema clone CFS187p. prokMSA_id:004112 AF068462 Treponema Treponema clone CFS181p. prokMSA_id:068261 AF365455 clone BM89MF1BC12 prokMSA_id:023164 AF408645 clone PCEDR683 prokMSA_id:065750 AF507628 soil clone C1136 prokMSA_id:004134 AJ270182 clone Hm1. prokMSA_id:004072 AJ270192 clone Hm12. prokMSA_id:004073 AJ270195 clone Hm19. prokMSA_id:050728 AJ287091 spirochete Kf450 prokMSA_id:042471 AJ287101 spirochete Nn408 prokMSA_id:020701 AJ287105 spirochete Nn416 prokMSA_id:034677 AJ287106 spirochete Nn417 prokMSA_id:045248 AJ287107 spirochete Nn422 prokMSA_id:050655 AJ287111 spirochete Nn506 prokMSA_id:036858 AJ287115 spirochete Nc15 prokMSA_id:038648 AJ287121 spirochete Rsa402 prokMSA_id:047146 AJ287122 spirochete Rsa403 prokMSA_id:019592 AJ287123 spirochete Rsa405 prokMSA_id:047627 AJ287124 spirochete Rsa406 prokMSA_id:030642 AJ287125 spirochete Rsa419 prokMSA_id:035493 AJ287126 spirochete Rsa438 prokMSA_id:052548 AJ390442 soil PBS-II-12 prokMSA_id:083445 AJ458947 Spirochete symbiont of Mixotricha paradoxa clone mp5 prokMSA_id:063024 AY122600 clone MW2-67 prokMSA_id:084311 AY280642 clone G2-20 prokMSA_id:091447 AY340853 isolate DGGE fragment SR_FBR_E15 prokMSA_id:004075 D63587 clone UN1. prokMSA_id:004079 D63597 clone UN114. prokMSA_id:004074 D63606 clone UN21. prokMSA_id:004037 D63610 clone UN28. prokMSA_id:004031 D63638 clone UN90. prokMSA_id:004135 D63641 clone UN96. prokMSA_id:004133 U81678 clone vadinBC23. prokMSA_id:004042 U81767 clone vadinHA24. prokMSA_id:004081 X89045 str. sp40-2. 2.27.3.2.7 SPI.SPNL1_SUBGROUP 16 seqs 2.27.3.2.7.001 OTU 4 seqs prokMSA_id:004140 AB015807 Spirochaeta sp. prokMSA_id:004141 AB015808 Spirochaeta sp. prokMSA_id:004142 AB015809 Spirochaeta sp. prokMSA_id:004136 U40791 Spirochaeta sp. str. NL1. 2.27.3.2.7.002 OTU 1 seq prokMSA_id:004143 AB015820 Spirochaeta sp. 2.27.3.2.7.003 OTU 1 seq prokMSA_id:004139 AB015805 Spirochaeta sp. 2.27.3.2.7.004 OTU 1 seq prokMSA_id:028145 AJ408206 equine intestinal sp. MW19 clone MW19 2.27.3.2.7.999 poor quality 9 seqs prokMSA_id:004137 AF068441 Treponema Treponema clone CFS5p. prokMSA_id:004138 AF068445 Treponema Treponema clone CFS145p. prokMSA_id:004144 AF175664 clone WJGRT-186. prokMSA_id:048875 AJ287100 spirochete Nn405 prokMSA_id:031895 AJ287102 spirochete Nn410 prokMSA_id:017279 AJ287108 spirochete Nn436 prokMSA_id:042666 AJ287109 spirochete Nn443 prokMSA_id:028967 AJ287110 spirochete Nn446 prokMSA_id:095029 AY368605 clone nc-14 2.27.3.3 SPI.AURANTIA 7 seqs 2.27.3.3.001 OTU 4 seqs prokMSA_id:089329 AJ565433 Spirochaeta sp. MWH-HuW8 isolate MWH-HuW8 prokMSA_id:090465 AJ565434 Spirochaeta sp. MWH-HuW24 isolate MWH-HuW24 prokMSA_id:088563 AY297804 Spirochaetes pACH87 prokMSA_id:004145 M57740 Spirochaeta aurantia subsp. aurantia str. J1 ATCC 25082 . 2.27.3.3.002 OTU 1 seq prokMSA_id:063294 AF523927 clone RCP1-64 2.27.3.3.003 OTU 1 seq prokMSA_id:083994 AY239566 clone CARB_ER1_5 2.27.3.3.999 poor quality 1 seq prokMSA_id:089319 AJ565432 Spirochaeta aurantia isolate WQM4 2.27.3.4 CRS.SP_STR_CP1 1 seq 2.27.3.4.001 OTU 1 seq prokMSA_id:004146 U42638 Cristispira sp. str. CP1. 2.27.3.5 BORRELIA_GROUP 317 seqs 2.27.3.5.001 OTU 245 seqs prokMSA_id:004171 AB007450 Borrelia garinii str. ChY13p. prokMSA_id:004220 AB016974 Borrelia 10MT str. 10MT. prokMSA_id:004288 AB022101 Borrelia sinica str. CMN3. prokMSA_id:004211 AB022140 Borrelia valaisiana str. CKA3a. prokMSA_id:004212 AB022141 Borrelia valaisiana str. CKA1. prokMSA_id:004218 AB022142 Borrelia valaisiana str. CKA2a. prokMSA_id:004219 AB022143 Borrelia valaisiana str. CKA4a. prokMSA_id:004289 AB022144 Borrelia sinica str. CMN1a. prokMSA_id:004290 AB022145 Borrelia sinica str. CMN2. prokMSA_id:004291 AB022146 Borrelia sinica str. CWO1. prokMSA_id:004259 AB030751 Borrelia tanukii str. NPNE1. prokMSA_id:031684 AB035385 Borrelia garinii strain:PBi prokMSA_id:047110 AB035386 Borrelia garinii strain:F511 prokMSA_id:027883 AB035387 Borrelia garinii strain:N303 prokMSA_id:034189 AB035388 Borrelia garinii strain:T25 prokMSA_id:044729 AB035389 Borrelia garinii strain:U063 prokMSA_id:041987 AB035390 Borrelia garinii strain:N417 prokMSA_id:052230 AB035391 Borrelia garinii strain:F548 prokMSA_id:023336 AB035392 Borrelia garinii strain:F641 prokMSA_id:022412 AB035393 Borrelia garinii strain:F669 prokMSA_id:020565 AB035394 Borrelia garinii strain:F508 prokMSA_id:045376 AB035395 Borrelia garinii strain:N341 prokMSA_id:049261 AB035396 Borrelia garinii strain:N374 prokMSA_id:046301 AB035397 Borrelia garinii strain:K269 prokMSA_id:074612 AB035398 Borrelia garinii strain:N337 prokMSA_id:033474 AB035399 Borrelia garinii strain:F624 prokMSA_id:026944 AB035400 Borrelia garinii strain:U039 prokMSA_id:026743 AB035401 Borrelia garinii strain:N346 prokMSA_id:052646 AB035402 Borrelia garinii strain:N410 prokMSA_id:027288 AB035403 Borrelia garinii strain:F632 prokMSA_id:032852 AB035404 Borrelia afzelii strain:ACA1 prokMSA_id:019331 AB035405 Borrelia afzelii strain:N490 prokMSA_id:052958 AB035406 Borrelia afzelii strain:U001 prokMSA_id:035785 AB035407 Borrelia afzelii strain:N334 prokMSA_id:027096 AB035408 Borrelia burgdorferi strain:297 prokMSA_id:019525 AB037123 Borrelia sp. KR1 prokMSA_id:052572 AB037124 Borrelia sp. KR3 prokMSA_id:025006 AB037125 Borrelia sp. TA1 prokMSA_id:044343 AB037126 Borrelia sp. TM1 prokMSA_id:059846 AB091456 Borrelia valaisiana strain:OC1/01 prokMSA_id:055971 AB091457 Borrelia valaisiana strain:OG45/01 prokMSA_id:060010 AB091458 Borrelia valaisiana strain:OM43 prokMSA_id:060005 AB091459 Borrelia valaisiana strain:OM50 prokMSA_id:055311 AB091460 Borrelia valaisiana strain:OS115/01 prokMSA_id:060004 AB091461 Borrelia valaisiana strain:OM58/01 prokMSA_id:071584 AB091462 Borrelia valaisiana strain:OM92/01 prokMSA_id:059843 AB091463 Borrelia valaisiana strain:OR5/01 prokMSA_id:072227 AB091464 Borrelia valaisiana strain:OS28/01 prokMSA_id:059841 AB091465 Borrelia valaisiana strain:OS3/01 prokMSA_id:074591 AB091466 Borrelia valaisiana strain:OS31 prokMSA_id:060002 AB091467 Borrelia valaisiana strain:OS42 prokMSA_id:060001 AB091468 Borrelia valaisiana strain:OS49 prokMSA_id:059842 AB091469 Borrelia valaisiana strain:OS66/01 prokMSA_id:059704 AB091815 Borrelia valaisiana strain:Tr29 prokMSA_id:059700 AB091816 Borrelia afzelii strain:Tr38 prokMSA_id:055731 AB091817 Borrelia garinii strain:Tr77 prokMSA_id:059696 AB091818 Borrelia afzelii strain:Tr96 prokMSA_id:059698 AB091819 Borrelia lusitaniae strain:Tr161 prokMSA_id:059697 AB091820 Borrelia lusitaniae strain:Tr170 prokMSA_id:059695 AB091821 Borrelia lusitaniae strain:Tr210 prokMSA_id:059699 AB091822 Borrelia lusitaniae strain:Tr213 prokMSA_id:059694 AB091823 Borrelia burgdorferi strain:Tr293 prokMSA_id:059693 AB091824 Borrelia garinii strain:Tr309 prokMSA_id:090093 AB111523 Borrelia garinii prokMSA_id:098539 AB111849 Borrelia sp. IST7 prokMSA_id:095373 AB111850 Borrelia sp. IST4 prokMSA_id:096034 AB111851 Borrelia sp. IST4 prokMSA_id:096595 AB111852 Borrelia sp. IST6 prokMSA_id:096377 AB111853 Borrelia sp. ISTF1 prokMSA_id:097806 AB111854 Borrelia sp. ISTF2 prokMSA_id:004285 AE000783 Borrelia burgdorferi. prokMSA_id:045102 AE001147 Borrelia burgdorferi section 33 of 70 of the complete genome prokMSA_id:004175 AF010163 Borrelia garinii str. A01C. prokMSA_id:004176 AF010164 Borrelia garinii str. A76S. prokMSA_id:004166 AF010165 Borrelia garinii str. A87S. prokMSA_id:004167 AF010166 Borrelia garinii str. M63. prokMSA_id:045780 AF055416 Borrelia sp. HN6 prokMSA_id:066988 AF055417 Borrelia sp. HN7 prokMSA_id:037085 AF055418 Borrelia sp. HN8 prokMSA_id:032661 AF055419 Borrelia sp. HNM14 prokMSA_id:021264 AF055420 Borrelia sp. HNM19 prokMSA_id:016983 AF055421 Borrelia sp. HNM13 prokMSA_id:004286 AF091367 str. Z41293. prokMSA_id:004287 AF091368 str. Z41493. prokMSA_id:004216 AF102056 Borrelia A14S str. A14S. prokMSA_id:004222 AF107356 Borrelia recurrentis str. A4. prokMSA_id:004223 AF107357 Borrelia recurrentis str. A5. prokMSA_id:004224 AF107358 Borrelia recurrentis str. A8. prokMSA_id:004225 AF107359 Borrelia recurrentis str. A10. prokMSA_id:004226 AF107360 Borrelia recurrentis str. A17. prokMSA_id:004227 AF107361 Borrelia recurrentis str. A11. prokMSA_id:004228 AF107362 Borrelia recurrentis str. A16. prokMSA_id:004229 AF107363 Borrelia duttonii str. Ku. prokMSA_id:004230 AF107364 Borrelia duttonii str. Ly. prokMSA_id:004231 AF107365 Borrelia duttonii str. La. prokMSA_id:004232 AF107366 Borrelia duttonii str. Ma. prokMSA_id:004233 AF107367 Borrelia recurrentis str. A1. prokMSA_id:004256 AF116903 Borrelia sp. prokMSA_id:004206 AF116917 Borrelia crocidurae str. A124B. prokMSA_id:004207 AF116918 Borrelia crocidurae str. A125B. prokMSA_id:027079 AF210134 Borrelia coriaceae isolate Co53 prokMSA_id:043875 AF210135 Borrelia coriaceae isolate CA434 prokMSA_id:038090 AF210136 Borrelia coriaceae isolate CA435 prokMSA_id:032451 AF210137 Borrelia parkeri prokMSA_id:025669 AF210138 Borrelia burgdorferi prokMSA_id:028678 AF228029 Borrelia hermsii strain MC77 prokMSA_id:048535 AF228030 Borrelia hermsii strain NM84 prokMSA_id:019185 AF228031 Borrelia hermsii strain SB82 prokMSA_id:027842 AF307099 Borrelia parkeri isolate 6230 complete prokMSA_id:050797 AF307100 Borrelia parkeri isolate 6232 complete prokMSA_id:079478 AF467957 Borrelia sp. B31 prokMSA_id:079337 AF467958 Borrelia sp. SI-1 prokMSA_id:079303 AF467959 Borrelia sp. SI-10 prokMSA_id:079285 AF467960 Borrelia sp. SM-1 prokMSA_id:079256 AF467961 Borrelia sp. SCI-2 prokMSA_id:079496 AF467962 Borrelia sp. AI-1 prokMSA_id:079467 AF467963 Borrelia sp. FD-1 prokMSA_id:079119 AF467964 Borrelia sp. MI-2 prokMSA_id:079244 AF467966 Borrelia sp. MI-6 prokMSA_id:079150 AF467967 Borrelia sp. MI-8 prokMSA_id:079408 AF467968 Borrelia sp. MI-9 prokMSA_id:079226 AF467969 Borrelia sp. SCGT-8a prokMSA_id:079174 AF467970 Borrelia sp. SCGT-10 prokMSA_id:079528 AF467972 Borrelia sp. MOD-5 prokMSA_id:079095 AF467973 Borrelia sp. BC-1 prokMSA_id:079357 AF467974 Borrelia sp. MOK-3a prokMSA_id:079368 AF467975 Borrelia sp. MOS-1b prokMSA_id:079116 AF467976 Borrelia sp. TXW-1 prokMSA_id:079595 AF477987 Borrelia burgdorferi strain BbDF prokMSA_id:079173 AF477989 Borrelia burgdorferi strain BbDM prokMSA_id:073630 AF497996 Borrelia sp. I-77 prokMSA_id:087237 AF529085 Borrelia sp. LB-W100 prokMSA_id:004161 AJ009749 Borrelia garinii str. isolate Far01. prokMSA_id:004162 AJ009750 Borrelia garinii str. isolate Far02. prokMSA_id:004163 AJ009751 Borrelia garinii str. isolate Fis01. prokMSA_id:004164 AJ009752 Borrelia garinii str. isolate Far03. prokMSA_id:004165 AJ009753 Borrelia garinii str. isolate Far04. prokMSA_id:004292 AJ224130 Borrelia burgdorferi str. CA446. prokMSA_id:004293 AJ224131 Borrelia burgdorferi str. CA28. prokMSA_id:004294 AJ224132 Borrelia burgdorferi str. CA31. prokMSA_id:004295 AJ224133 Borrelia burgdorferi str. CA13. prokMSA_id:004296 AJ224134 Borrelia burgdorferi str. CA8. prokMSA_id:004297 AJ224135 Borrelia burgdorferi str. CA29. prokMSA_id:004298 AJ224136 Borrelia burgdorferi str. CA2. prokMSA_id:004299 AJ224137 Borrelia burgdorferi str. CA19. prokMSA_id:004300 AJ224138 Borrelia burgdorferi str. 25015. prokMSA_id:004301 AJ224139 Borrelia burgdorferi str. CA128. prokMSA_id:004302 AJ224140 Borrelia burgdorferi str. CA55. prokMSA_id:004303 AJ224141 Borrelia burgdorferi str. DN127. prokMSA_id:004304 AJ224142 Borrelia burgdorferi str. NE49. prokMSA_id:004210 AJ225165 Borrelia sp. str. VS116. prokMSA_id:004236 AJ229044 Borrelia sp. str. M94496. prokMSA_id:051974 AY024345 Borrelia sp. LB-2001 prokMSA_id:033625 AY049949 Borrelia sp. EFL-S0100110 prokMSA_id:089055 AY129302 Borrelia garinii prokMSA_id:094239 AY147008 Borrelia sp. PC-Eq17 prokMSA_id:076818 AY166715 Borrelia lonestari prokMSA_id:080642 AY182032 Borrelia burgdorferi prokMSA_id:092488 AY253149 Borrelia sp. MK-N61 prokMSA_id:004240 D45192 Borrelia miyamotoi str. HT31 JCM 9579 . prokMSA_id:004168 D67018 Borrelia garinii str. 20047. prokMSA_id:004198 D67019 Borrelia afzelii str. HT61. prokMSA_id:004169 D67020 Borrelia tanukii str. OR2eL. prokMSA_id:004213 D67021 Borrelia sp. str. Am501. prokMSA_id:004214 D67022 Borrelia turdi str. Ya501. prokMSA_id:004170 D67023 Borrelia tanukii str. Hk501. prokMSA_id:004215 D67024 Borrelia turdi str. Ac502. prokMSA_id:004185 L36160 Borrelia burgdorferi str. 934U. prokMSA_id:004221 L37837 Borrelia sp. str. FCB-1. prokMSA_id:004209 L39080 Borrelia burgdorferi str. 9MT. prokMSA_id:004258 L39081 Borrelia burgdorferi str. 935T. prokMSA_id:004283 L40596 Borrelia burgdorferi str. DN127. prokMSA_id:004272 L40597 Borrelia japonica str. HO14. prokMSA_id:004269 L40598 Borrelia japonica str. IKA2. prokMSA_id:004199 L46688 Borrelia andersonii. prokMSA_id:004203 L46695 Borrelia japonica. prokMSA_id:004238 L46696 Borrelia japonica. prokMSA_id:004271 L46697 Borrelia afzelii. prokMSA_id:004202 L46701 Borrelia andersonii. prokMSA_id:004183 M59293 Borrelia burgdorferi str. B31 ATCC 35210 . prokMSA_id:004149 M60968 Borrelia hermsii str. HS1T ATCC 35209. prokMSA_id:004257 M60969 Borrelia burgdorferi str. Sh-2-82. prokMSA_id:004150 M88329 Borrelia burgdorferi. prokMSA_id:004153 M89935 Borrelia burgdorferi str. CA2-87. prokMSA_id:004208 M89938 Borrelia burgdorferi str. VS219. prokMSA_id:064683 NC_001318 Borrelia burgdorferi complete genome prokMSA_id:004156 U03396 Borrelia burgdorferi. prokMSA_id:004172 U23211 Borrelia lonestari str. Texas 20. prokMSA_id:004264 U28501 Borrelia burgdorferi str. ESP-1. prokMSA_id:004204 U28502 Borrelia sp. prokMSA_id:004205 U28503 Borrelia duttoni. prokMSA_id:072905 U38375 Borrelia theileri prokMSA_id:004242 U42283 Borrelia crocidurae str. UESV/ACH. prokMSA_id:004182 U42284 Borrelia anserina str. ES-1. prokMSA_id:004243 U42285 Borrelia crocidurae str. UESV/626BAN. prokMSA_id:004154 U42286 Borrelia coriaceae str. Co53 ATCC 43381 . prokMSA_id:004244 U42287 Borrelia crocidurae str. UESV/917BAR. prokMSA_id:004251 U42288 Borrelia duttonii str. UESV/117DUTT. prokMSA_id:004245 U42289 Borrelia crocidurae str. UESV/1040DAK 24. prokMSA_id:004246 U42290 Borrelia crocidurae str. UESV/1045DAK 33. prokMSA_id:004247 U42291 Borrelia crocidurae str. UESV/MER. prokMSA_id:004241 U42292 Borrelia hermsii str. HS1T ATCC 35209. prokMSA_id:004252 U42293 Borrelia duttonii str. UR/BD94MIT. prokMSA_id:004254 U42294 Borrelia hispanica str. UESV/246. prokMSA_id:004248 U42295 Borrelia crocidurae str. UESV/1043DAK 28. prokMSA_id:004234 U42296 Borrelia parkeri str. M3001. prokMSA_id:004155 U42297 Borrelia persica str. UESV/340. prokMSA_id:004253 U42298 Borrelia duttonii str. UESV/334RWA. prokMSA_id:004235 U42299 Borrelia turicatae str. M2007. prokMSA_id:004255 U42300 Borrelia recurrentis str. A1. prokMSA_id:004249 U42301 Borrelia crocidurae str. UESV/523SIS. prokMSA_id:004250 U42302 Borrelia crocidurae str. UESV/1096TEN. prokMSA_id:004217 U44938 Borrelia burgdorferi str. 5MT. prokMSA_id:004263 U44939 Borrelia burgdorferi str. 17Y. prokMSA_id:004268 U78151 Borrelia afzelii str. VS461. prokMSA_id:004197 U78152 Borrelia valaisiana str. VS116. prokMSA_id:004191 U78153 Borrelia valaisiana str. AR-2. prokMSA_id:004192 U78154 Borrelia valaisiana str. M19. prokMSA_id:004193 U78155 Borrelia valaisiana str. M49. prokMSA_id:004194 U78156 Borrelia valaisiana str. M53. prokMSA_id:004239 X57404 Borrelia burgdorferi str. B31 ATCC 35210 . prokMSA_id:004262 X85188 Borrelia afzelii str. DK2. prokMSA_id:004157 X85189 Borrelia burgdorferi str. 272. prokMSA_id:004282 X85190 Borrelia afzelii str. DK1. prokMSA_id:004261 X85191 Borrelia afzelii str. DK21. prokMSA_id:004267 X85192 Borrelia afzelii str. DK3. prokMSA_id:004177 X85193 Borrelia garinii str. DK27. prokMSA_id:004173 X85194 Borrelia afzelii str. DK4. prokMSA_id:004180 X85195 Borrelia burgdorferi str. DK7. prokMSA_id:004279 X85196 Borrelia burgdorferi str. Kipp. prokMSA_id:004158 X85197 Borrelia afzelii str. DK5. prokMSA_id:004159 X85198 Borrelia garinii str. SL20. prokMSA_id:004174 X85199 Borrelia garinii str. PBi. prokMSA_id:004277 X85200 Borrelia burgdorferi str. MUL. prokMSA_id:004280 X85201 Borrelia burgdorferi str. DUNKIRK. prokMSA_id:004160 X85202 Borrelia garinii str. DK29. prokMSA_id:004201 X85203 Borrelia burgdorferi str. LIPITZ. prokMSA_id:004265 X85204 Borrelia burgdorferi str. 297. prokMSA_id:004188 X98226 Borrelia burgdorferi. prokMSA_id:004189 X98228 Borrelia burgdorferi. prokMSA_id:004190 X98229 Borrelia burgdorferi. prokMSA_id:004187 X98230 Borrelia burgdorferi. prokMSA_id:004186 X98231 Borrelia burgdorferi. prokMSA_id:004195 X98232 Borrelia valaisiana str. VS116. prokMSA_id:004196 X98233 Borrelia valaisiana str. UK. 2.27.3.5.999 poor quality 72 seqs prokMSA_id:021402 AF245097 Borrelia garinii strain Rio3 prokMSA_id:047029 AF245098 Borrelia garinii strain PV4 prokMSA_id:043457 AF245099 Borrelia valaisiana strain PV7 prokMSA_id:031429 AF245100 Borrelia garinii strain PV6 prokMSA_id:037056 AF245101 Borrelia lusitaniae strain PV8 prokMSA_id:019043 AF245102 Borrelia garinii strain Rio4 prokMSA_id:031129 AF245103 Borrelia burgdorferi strain PV1 prokMSA_id:034886 AF245105 Borrelia burgdorferi strain PV2 prokMSA_id:038599 AF245106 Borrelia burgdorferi strain PV3 prokMSA_id:038663 AF245107 Borrelia garinii strain PV5 prokMSA_id:048461 AF245108 Borrelia garinii strain Rio5 prokMSA_id:050937 AF245109 Borrelia valaisiana strain Rio6 prokMSA_id:051678 AF245110 Borrelia garinii strain Rio1 prokMSA_id:023392 AF245111 Borrelia garinii strain Rio2 prokMSA_id:023655 AH003459 Borrelia hermsii small subunit prokMSA_id:073535 AJ292455 ZI-13 clone ZI-13 prokMSA_id:060436 AY083470 Borrelia burgdorferi isolate Ri11 prokMSA_id:060435 AY083471 Borrelia burgdorferi isolate St1 prokMSA_id:060434 AY083472 Borrelia burgdorferi isolate To60 prokMSA_id:060433 AY083473 Borrelia burgdorferi isolate To72 prokMSA_id:060432 AY083474 Borrelia burgdorferi isolate Ku10 prokMSA_id:060431 AY083475 Borrelia burgdorferi isolate To76 prokMSA_id:070594 AY083476 Borrelia burgdorferi isolate Al10 prokMSA_id:060428 AY083477 Borrelia burgdorferi isolate As15 prokMSA_id:056694 AY083478 Borrelia burgdorferi isolate Ga2 prokMSA_id:060430 AY083479 Borrelia burgdorferi isolate Os8 prokMSA_id:060426 AY083480 Borrelia burgdorferi isolate Ri13 prokMSA_id:060427 AY083481 Borrelia burgdorferi isolate St12 prokMSA_id:060425 AY083482 Borrelia burgdorferi isolate St13 prokMSA_id:060424 AY083483 Borrelia burgdorferi isolate St8 prokMSA_id:060423 AY083484 Borrelia burgdorferi isolate Tr2 prokMSA_id:060420 AY083485 Borrelia burgdorferi isolate Ri9 prokMSA_id:060421 AY083486 Borrelia burgdorferi isolate Al12 prokMSA_id:060422 AY083487 Borrelia burgdorferi isolate Al16 prokMSA_id:060419 AY083488 Borrelia burgdorferi isolate As18 prokMSA_id:060418 AY083489 Borrelia burgdorferi isolate As7 prokMSA_id:060416 AY083490 Borrelia burgdorferi isolate Ha3 prokMSA_id:060415 AY083491 Borrelia burgdorferi isolate Ha5 prokMSA_id:060412 AY083492 Borrelia burgdorferi isolate Os10 prokMSA_id:060414 AY083493 Borrelia burgdorferi isolate Os2 prokMSA_id:060413 AY083494 Borrelia burgdorferi isolate Osk2 prokMSA_id:056448 AY083495 Borrelia burgdorferi isolate Osk3 prokMSA_id:060410 AY083496 Borrelia burgdorferi isolate Sa5 prokMSA_id:055421 AY083497 Borrelia burgdorferi isolate To106 prokMSA_id:060409 AY083498 Borrelia burgdorferi isolate To16 prokMSA_id:060408 AY083499 Borrelia burgdorferi isolate To89 prokMSA_id:060407 AY083500 Borrelia burgdorferi isolate Na34 prokMSA_id:060405 AY083501 Borrelia burgdorferi isolate St4 prokMSA_id:083737 AY197374 clone B01R001 prokMSA_id:004281 L10133 Borrelia hermsii str. M1001. prokMSA_id:033089 L10134 Borrelia hermsii small subunit prokMSA_id:045450 L10135 Borrelia hermsii small subunit prokMSA_id:051064 L10136 Borrelia hermsii small subunit prokMSA_id:004275 M60967 Borrelia burgdorferi str. G2. prokMSA_id:004148 M60970 Borrelia coriaceae str. Co53 ATCC 43381 . prokMSA_id:004237 M64309 Borrelia burgdorferi str. 1352. prokMSA_id:004151 M64310 Borrelia burgdorferi str. 20004. prokMSA_id:004270 M64311 Borrelia burgdorferi str. G1. prokMSA_id:004178 M64312 Borrelia anserina. prokMSA_id:004200 M72396 Borrelia sp. str. 19941. prokMSA_id:004181 M72397 Borrelia anserina str. Es. prokMSA_id:004266 M84815 Borrelia burgdorferi str. R-IP3. prokMSA_id:004273 M85070 Borrelia hermsii. prokMSA_id:004278 M85074 Borrelia hermsii. prokMSA_id:004274 M85075 Borrelia hermsii. prokMSA_id:004179 M89936 Borrelia burgdorferi str. Illinois 1. prokMSA_id:004147 M89937 Borrelia burgdorferi str. R-IP90. prokMSA_id:004260 U28418 Borrelia crocidurae str. ORI. prokMSA_id:004284 U28500 Borrelia burgdorferi str. Rioja garinii. prokMSA_id:004152 U38374 Borrelia barbouri. prokMSA_id:004276 U38375 Borrelia theileri. prokMSA_id:004184 U44404 Borrelia hispanica str. JH. 2.27.4 LEPTOSPIRA_SUBDIVISION 132 seqs 2.27.4.1 LEPTOSPIRA_GROUP 116 seqs 2.27.4.1.1 LPS.INTERROGANS_SUBGROUP 80 seqs 2.27.4.1.1.002 OTU 1 seq prokMSA_id:004354 U12672 Leptospira santarosai str. LT81 isolate SA39. 2.27.4.1.1.004 OTU 20 seqs prokMSA_id:058029 AE011412 Leptospira interrogans serovar lai str. 56601 chromosome I section 221 of 397 of the complete prokMSA_id:058028 AE011471 Leptospira interrogans serovar lai str. 56601 chromosome I section 280 of 397 of the complete prokMSA_id:065605 AY034037 Leptospira weilii strain Ecochallenge prokMSA_id:058052 NC_004342 Leptospira interrogans serovar lai str. 56601 chromosome I complete prokMSA_id:004306 U12670 Leptospira borgpetersenii str. Hardjo bovis/Sponselee isolate prokMSA_id:004357 U12671 Leptospira noguchii str. Fort Bragg isolate NB36. prokMSA_id:004307 U12673 Leptospira weilii str. Sarmin isolate WB46. prokMSA_id:004351 U12676 Leptospira weilii str. Celledoni isolate WA 45 ATCC 43285 . prokMSA_id:004342 U12677 Leptospira weilii str. Worsfold isolate WA 52. prokMSA_id:004349 U60594 Leptospira fainei str. Hurstbridge. prokMSA_id:004333 X17547 Leptospira borgpetersenii str. Moulton serovar canicola. prokMSA_id:004335 Y19243 Leptospira fainei str. SSI 5402-98. prokMSA_id:004310 Z12817 Leptospira interrogans str. icterohaemorrhagiae RGA. prokMSA_id:004359 Z21628 Leptospira kirschneri str. cynopteri 3522 C. prokMSA_id:004348 Z21630 Leptospira borgpetersenii str. Veldrat Bataviae 46 ATCC 43292 . prokMSA_id:004346 Z21634 Leptospira inadai str. lyme ATCC 43289 . prokMSA_id:004347 Z21635 Leptospira noguchii str. Panama CZ 214 ATCC 43288 . prokMSA_id:004343 Z21637 Leptospira weilii str. Celledoni isolate WA 45 ATCC 43285 . prokMSA_id:004344 Z21648 Leptospira meyeri str. Ranarum ICF ATCC 43287 . prokMSA_id:004305 Z21649 Leptospira santarosai str. Shermani 1342K ATCC 43286 . 2.27.4.1.1.005 OTU 1 seq prokMSA_id:044594 AF445708 spirochete clone SM2A10 2.27.4.1.1.006 OTU 1 seq prokMSA_id:067836 AY082470 spirochete clone 44a-B1-48 2.27.4.1.1.999 poor quality 57 seqs prokMSA_id:004325 AB007012 Spirochaeta sp. str. SO-104. prokMSA_id:004350 AB007014 Spirochaeta sp. str. FO-95. prokMSA_id:004352 AF000667 Leptospira interrogans str. M 6906. prokMSA_id:004312 AF003953 Leptospira interrogans str. 48/95. prokMSA_id:004341 AF157067 str. MoskvaV. prokMSA_id:004340 AF157069 str. Akiyami A. prokMSA_id:004332 AF157071 str. M84. prokMSA_id:004331 AF157072 str. A85. prokMSA_id:004339 AF157073 str. Jac. prokMSA_id:004353 AF157074 str. LT89 68. prokMSA_id:004330 AF157075 str. Sofia 874. prokMSA_id:004329 AF157076 str. Sofia 874. prokMSA_id:004328 AF157077 str. Sofia 874. prokMSA_id:004327 AF157078 str. A23. prokMSA_id:004345 AF157079 str. ICF. prokMSA_id:004326 AF157080 str. A10. prokMSA_id:004338 AF157081 str. Bandicoot. prokMSA_id:004337 AF157082 str. Bandicoot. prokMSA_id:004356 AF157083 str. CZ188. prokMSA_id:004336 AF157084 str. Par. prokMSA_id:004358 AF157086 LSU 1945. prokMSA_id:046803 AF428582 clone CRD99-04 prokMSA_id:030268 AF428643 clone CRD99-65 prokMSA_id:057569 AY149217 Leptospira kirschneri strain M262 prokMSA_id:057568 AY149218 Leptospira kirschneri strain M116 prokMSA_id:057567 AY149219 Leptospira kirschneri strain M261 prokMSA_id:057565 AY149220 Leptospira kirschneri strain M222 prokMSA_id:057564 AY149221 Leptospira kirschneri strain M218 prokMSA_id:057563 AY149222 Leptospira borgpetersenii strain M11 prokMSA_id:057562 AY149223 Leptospira borgpetersenii strain M3 prokMSA_id:057560 AY149224 Leptospira borgpetersenii strain M33 prokMSA_id:057559 AY149225 Leptospira borgpetersenii strain M31 prokMSA_id:057561 AY149226 Leptospira borgpetersenii strain M30 prokMSA_id:057558 AY149227 Leptospira borgpetersenii strain M18 prokMSA_id:056618 AY149228 Leptospira borgpetersenii strain M1 prokMSA_id:057557 AY149229 Leptospira borgpetersenii strain M27 prokMSA_id:057555 AY149230 Leptospira borgpetersenii strain M10 prokMSA_id:057556 AY149231 Leptospira borgpetersenii strain M12 prokMSA_id:057553 AY149232 Leptospira interrogans strain M29 prokMSA_id:093404 AY367352 Leptospira interrogans prokMSA_id:004309 M71241 Leptospira interrogans str. Kennewicki serovar pomona. prokMSA_id:004311 U12669 Leptospira borgpetersenii str. 1627 Burgas isolate BD30. prokMSA_id:004324 U92527 Leptospira interrogans str. Perepelitsin. prokMSA_id:004334 U92528 Leptospira interrogans str. Amos. prokMSA_id:004355 U92529 Leptospira interrogans str. LT 79. prokMSA_id:004308 U92530 Leptospira interrogans str. 94-7997013. prokMSA_id:004313 U94969 Leptospira inadai str. MW 4. prokMSA_id:004314 U94970 Leptospira inadai str. LT 64-68. prokMSA_id:004315 U94971 Leptospira inadai str. LT 430. prokMSA_id:004316 U94972 Leptospira inadai str. H 6. prokMSA_id:004317 U94973 Leptospira inadai str. Feral. prokMSA_id:004318 U94974 Leptospira inadai str. 79/95. prokMSA_id:004319 U94975 Leptospira inadai str. 68/94. prokMSA_id:004320 U94976 Leptospira inadai str. 346/95. prokMSA_id:004321 U94977 Leptospira inadai str. 268/95. prokMSA_id:004322 U94978 Leptospira inadai str. 218/95. prokMSA_id:004323 U94979 Leptospira inadai str. 1078 VRI. 2.27.4.1.2 LPS.BIFLEXA_SUBGROUP 36 seqs 2.27.4.1.2.001 OTU 16 seqs prokMSA_id:032731 AF167353 Leptospira meyeri prokMSA_id:004360 M34261 Leptospira sp. str. A-183. prokMSA_id:004383 Z12821 Leptospira biflexa str. patoc Patoc 1. prokMSA_id:004370 Z21629 Leptospira biflexa str. Porto. prokMSA_id:004382 Z21631 Leptospira biflexa. prokMSA_id:004381 Z21633 Leptospira biflexa. prokMSA_id:004384 Z21638 Leptospira wolbachii str. CDC Biflexa ATCC 43284 . prokMSA_id:004372 Z26969 Leptospira biflexa str. Tororo ATCC 23583. prokMSA_id:004380 Z26970 Leptospira biflexa str. Tororo parent strain. prokMSA_id:004376 Z98587 Leptospira biflexa subsp. Tororo str. mutant 3/1993. prokMSA_id:004377 Z98588 Leptospira biflexa subsp. Tororo str. mutant 3/1994. prokMSA_id:004373 Z98589 Leptospira biflexa subsp. Tororo str. mutant 1/1993. prokMSA_id:004378 Z98590 Leptospira biflexa subsp. Tororo str. mutant 6/1993. prokMSA_id:004379 Z98591 Leptospira biflexa subsp. Tororo str. mutant 6/1994. prokMSA_id:004374 Z98592 Leptospira biflexa subsp. Tororo str. mutant 2/1993. prokMSA_id:004375 Z98593 Leptospira biflexa subsp. Tororo str. mutant 2/1994. 2.27.4.1.2.002 OTU 2 seqs prokMSA_id:079994 AY193186 candidate division OD1 clone DA11 prokMSA_id:080382 AY193189 candidate division OD1 clone DA81 2.27.4.1.2.003 OTU 1 seq prokMSA_id:080460 AY193190 candidate division OD1 clone DA10 2.27.4.1.2.004 OTU 1 seq prokMSA_id:080678 AY193196 candidate division OD1 clone DA4 2.27.4.1.2.999 poor quality 16 seqs prokMSA_id:004371 AF128656 clone C0108. prokMSA_id:069373 AF128692 soil S079 prokMSA_id:004369 AF157068 str. Veldrat Semarang 173. prokMSA_id:004368 AF157070 str. PatocIT. prokMSA_id:004367 AF157085 str. Bandicoot. prokMSA_id:004366 AF157087 str. ICF. prokMSA_id:004365 AF157088 str. Veldrat Semarang 173. prokMSA_id:004364 AF157089 str. Veldrat Semarang 173. prokMSA_id:068075 AF365671 clone BM89DS6BbF4 prokMSA_id:065696 AF507684 soil clone S03 prokMSA_id:033947 AJ310920 Leptospira biflexa strain Patoc 1 isolate PFRA prokMSA_id:037364 AJ310921 Leptospira biflexa strain Patoc 1 isolate PITAL prokMSA_id:022588 AJ310922 Leptospira meyeri strain Patoc 1 isolate PUSA prokMSA_id:004361 M88721 Leptospira sp. str. A-183. prokMSA_id:004362 U80038 Leptospira sp. str. LT 932. prokMSA_id:004363 U80039 Leptospira sp. str. Compton 746. 2.27.4.2 LEPTONEMA_GROUP 15 seqs 2.27.4.2.001 OTU 2 seqs prokMSA_id:004386 M88719 Leptonema illini str. 3055. prokMSA_id:004396 Z21632 Leptonema illini str. 3055. 2.27.4.2.002 OTU 2 seqs prokMSA_id:088155 AY293856 Leptospira parva prokMSA_id:097468 AY398688 Leptospira parva isolate L050b 2.27.4.2.003 OTU 1 seq prokMSA_id:088308 AY327226 clone ZB34 2.27.4.2.999 poor quality 10 seqs prokMSA_id:004387 AF000659 Leptonema illini str. 13/94. prokMSA_id:004388 AF000660 Leptonema illini str. 17/95. prokMSA_id:004389 AF000661 Leptonema illini str. 3/95. prokMSA_id:004390 AF000662 Leptonema illini str. 309/95. prokMSA_id:004391 AF000663 Leptonema illini str. 315/95. prokMSA_id:004392 AF000664 Leptonema illini str. 48/94. prokMSA_id:004393 AF000665 Leptonema illini str. 496/95. prokMSA_id:004394 AF000666 Leptonema illini str. 499/95. prokMSA_id:004395 AF026999 clone OPS96. prokMSA_id:004385 Z21636 Leptospira parva str. H. 2.27.4.3 ENVIRONMENTAL_CLONE_OS-7 1 seq 2.27.4.3.999 poor quality 1 seq prokMSA_id:004397 L04704 Octopus Spring microbial mat from Yellowstone NP clone OSV-L-7. 2.28 PROTEOBACTERIA 37300 seqs 2.28.1 ALPHA_SUBDIVISION 10433 seqs 2.28.1.1 RDV.SALINARUM_GROUP 31 seqs 2.28.1.1.001 OTU 1 seq prokMSA_id:004399 D14432 Rhodovibrio salinarum NCIMB 2243 . 2.28.1.1.002 OTU 1 seq prokMSA_id:062473 AJ318524 Rhodovibrio sodomensis strain SG3105 2.28.1.1.003 OTU 1 seq prokMSA_id:062960 AF527590 clone LPU04 2.28.1.1.004 OTU 1 seq prokMSA_id:070396 AF280850 mle1-13 2.28.1.1.005 OTU 1 seq prokMSA_id:078120 AB089093 alpha clone:Rs-M75 2.28.1.1.006 OTU 1 seq prokMSA_id:081195 AY192053 alpha clone P83-GM4R-t 2.28.1.1.007 OTU 1 seq prokMSA_id:082213 AY192071 alpha clone P11-GM4R-t 2.28.1.1.008 OTU 1 seq prokMSA_id:082702 AJ495615 alpha isolate SA-15 2.28.1.1.009 OTU 1 seq prokMSA_id:095041 AY373412 clone A56 complete 2.28.1.1.999 poor quality 22 seqs prokMSA_id:068291 AF361678 clone MN13BT4-59 prokMSA_id:068260 AF365456 clone BM89MF1BC3 prokMSA_id:068230 AF365493 clone BM89MF5BA8 prokMSA_id:074800 AF365759 clone BT60DS4BF6 prokMSA_id:067994 AF365767 clone BT60DS4BH1 prokMSA_id:025218 AF474000 alpha LR-30 prokMSA_id:070475 AF544864 alpha clone D1C-72 prokMSA_id:073921 AF544887 alpha clone D1-63 prokMSA_id:069193 AF544930 alpha clone 6-6-1 prokMSA_id:058347 AJ489413 clone NS05-62 prokMSA_id:084412 AJ495625 alpha isolate SA-26 prokMSA_id:082734 AJ495634 alpha isolate SA-35 prokMSA_id:085942 AJ495654 alpha isolate SB-7 prokMSA_id:085333 AJ495655 alpha isolate SB-8 prokMSA_id:085174 AJ495663 alpha isolate SB-17 prokMSA_id:085338 AJ495667 alpha isolate SB-21 prokMSA_id:066965 AY038482 clone CD1H10 prokMSA_id:086725 AY283093 alpha clone NS-58 prokMSA_id:088977 AY323138 alpha clone A115-19 prokMSA_id:004398 M59069 Rhodovibrio salinarum ATCC 35394 . prokMSA_id:004400 M59072 Rhodospirillum sodomense str. DS1 ATCC 51195 . prokMSA_id:004401 X91445 AEspoe hard rock 10-626m below ground surface clone A22L. 2.28.1.2 RHODOPILA_GROUP 452 seqs 2.28.1.2.1 ENVIRONMENTAL_CLONE_OS_O 1 seq 2.28.1.2.1.999 poor quality 1 seq prokMSA_id:004402 L04706 Octopus Spring microbial mat from Yellowstone NP clone O. 2.28.1.2.2 RSC.THIOSULFATOPHILUS_SUBGROUP 6 seqs 2.28.1.2.2.001 OTU 1 seq prokMSA_id:004404 AF173825 clone LB3-94. 2.28.1.2.2.002 OTU 1 seq prokMSA_id:087164 AY268231 clone D4 small subunit 2.28.1.2.2.999 poor quality 4 seqs prokMSA_id:038137 AF316786 Crater Lake CL0-117 prokMSA_id:061238 AF432660 clone SMW4.77WL prokMSA_id:069631 AY146670 Alpha K19 prokMSA_id:004403 X72908 Roseococcus thiosulfatophilus str. RB-3 DSM 8511 . 2.28.1.2.3 RPL.GLOBIFORMIS_SUBGROUP 131 seqs 2.28.1.2.3.001 OTU 1 seq prokMSA_id:004417 D86512 Acidosphaera rubrifaciens str. HS-AP3. 2.28.1.2.3.002 OTU 2 seqs prokMSA_id:004416 AB009013 Paracraurococcus ruber str. NS102. prokMSA_id:004414 D85827 Paracraurococcus ruber str. NS89. 2.28.1.2.3.003 OTU 1 seq prokMSA_id:004415 D85828 Craurococcus roseus str. NS130. 2.28.1.2.3.004 OTU 1 seq prokMSA_id:004413 AF170742 Paracraurococcus QSSC5-3 str. QSSC5-3. 2.28.1.2.3.005 OTU 1 seq prokMSA_id:004412 AF026978 clone OPT5. 2.28.1.2.3.006 OTU 1 seq prokMSA_id:004410 D86513 Rhodopila globiformis str. 7950 DSM 161. 2.28.1.2.3.007 OTU 1 seq prokMSA_id:004407 X68472 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.28.1.2.3.009 OTU 1 seq prokMSA_id:017264 AF232921 MS5 2.28.1.2.3.010 OTU 1 seq prokMSA_id:069622 AY145658 alpha FL12E03 2.28.1.2.3.011 OTU 3 seqs prokMSA_id:073222 AJ295646 KF-JG30-B10 prokMSA_id:026912 AJ295647 KF-JG30-B12 prokMSA_id:040191 AJ295648 KF-JG30-C23 2.28.1.2.3.012 OTU 1 seq prokMSA_id:033392 AF376024 Acidisphaera sp. NO-15 2.28.1.2.3.013 OTU 1 seq prokMSA_id:035938 AJ292609 WD2105 clone WD2105 2.28.1.2.3.014 OTU 3 seqs prokMSA_id:039022 AF356015 clone RO3 prokMSA_id:041076 AF391980 thermal soil clone YNPFFP86 prokMSA_id:058321 AY140238 Gram-negative heterotrophic acidophile Y008 2.28.1.2.3.015 OTU 1 seq prokMSA_id:055243 AJ488505 Muricoccus roseus 2.28.1.2.3.016 OTU 1 seq prokMSA_id:042326 AJ315073 isolate LMG19505 2.28.1.2.3.017 OTU 3 seqs prokMSA_id:055753 AF533356 Roseomonas genomospecies 5 prokMSA_id:076334 AY150049 Roseomonas genomospecies 5 strain ATCC 49960 prokMSA_id:084915 AY244987 rumen clone BS36 2.28.1.2.3.018 OTU 1 seq prokMSA_id:042768 AJ290043 GKS2-218 2.28.1.2.3.019 OTU 1 seq prokMSA_id:055398 AB087323 clone:CF52 2.28.1.2.3.021 OTU 14 seqs prokMSA_id:026143 AF227831 str. 47076 prokMSA_id:024986 AF227855 str. 96446 prokMSA_id:060996 AF531769 Alpha 1461A prokMSA_id:060474 AF533352 Roseomonas gilardii prokMSA_id:060463 AF533357 Roseomonas sp. NML94-0193 prokMSA_id:074557 AF533358 Roseomonas sp. NML98-0009 prokMSA_id:060464 AF533359 Roseomonas sp. NML97-0121 prokMSA_id:070407 AF533360 Roseomonas sp. NML98-0157 prokMSA_id:059735 AF538712 Roseomonas sp. MDA5527 prokMSA_id:075313 AY150045 Roseomonas gilardii strain ATCC 49956 prokMSA_id:075079 AY150051 Roseomonas gilardii strain E9464 prokMSA_id:083064 AY219712 Roseomonas sp. BON 1 prokMSA_id:085056 AY220740 Roseomonas gilardii prokMSA_id:092249 AY360348 Roseomonas sp. 040703/248107A 2.28.1.2.3.022 OTU 2 seqs prokMSA_id:060465 AF533355 Roseomonas genomospecies 4 prokMSA_id:075114 AY150048 Roseomonas genomospecies 4 strain ATCC 49959 2.28.1.2.3.023 OTU 3 seqs prokMSA_id:060466 AF533353 Roseomonas cervicalis prokMSA_id:063602 AY043384 AU2539 prokMSA_id:075850 AY150047 Roseomonas cervicalis strain ATCC 49957 2.28.1.2.3.024 OTU 2 seqs prokMSA_id:060590 AF407709 clone G62 prokMSA_id:060580 AF407720 clone B35 2.28.1.2.3.025 OTU 2 seqs prokMSA_id:060584 AF407715 clone B13 prokMSA_id:079493 AF465832 Rubritepida flocculans 2.28.1.2.3.026 OTU 1 seq prokMSA_id:063334 AF523876 clone RCP2-8 2.28.1.2.3.027 OTU 1 seq prokMSA_id:063335 AF523877 clone RCP2-88 2.28.1.2.3.028 OTU 1 seq prokMSA_id:063336 AF523875 clone RCP2-10 2.28.1.2.3.029 OTU 1 seq prokMSA_id:064695 AF513983 Leahibacter roseus 2.28.1.2.3.030 OTU 1 seq prokMSA_id:064742 AJ488504 Teichococcus ludipueritiae 2.28.1.2.3.031 OTU 1 seq prokMSA_id:065720 AF507659 soil clone C181 2.28.1.2.3.032 OTU 1 seq prokMSA_id:065902 AF507421 soil clone C064 2.28.1.2.3.033 OTU 1 seq prokMSA_id:066483 AY100609 clone cvf70147 2.28.1.2.3.034 OTU 1 seq prokMSA_id:077305 AY167826 Roseomonas sp. SAFR-014 2.28.1.2.3.035 OTU 1 seq prokMSA_id:078172 AB089098 alpha clone:Rs-H51 2.28.1.2.3.036 OTU 1 seq prokMSA_id:080424 AY192269 alpha clone S3-4F 2.28.1.2.3.037 OTU 1 seq prokMSA_id:081029 AY192273 alpha clone W2b-8C 2.28.1.2.3.038 OTU 1 seq prokMSA_id:082151 AY192060 alpha clone P50-GM4R-t 2.28.1.2.3.039 OTU 1 seq prokMSA_id:082416 AY192039 alpha clone G60-GM4R 2.28.1.2.3.040 OTU 1 seq prokMSA_id:085972 AY250861 alpha clone BPU264 2.28.1.2.3.041 OTU 1 seq prokMSA_id:086117 AY250856 alpha clone BPU105 2.28.1.2.3.042 OTU 1 seq prokMSA_id:087974 AY278886 Roseomonas sp. T4-2 2.28.1.2.3.043 OTU 1 seq prokMSA_id:088754 AF443585 clone C-F-13 2.28.1.2.3.044 OTU 1 seq prokMSA_id:090468 AY328845 Drinking water MB15 2.28.1.2.3.045 OTU 1 seq prokMSA_id:091688 AY345392 G6 2.28.1.2.3.999 poor quality 63 seqs prokMSA_id:019215 AF078210 Grassland soil clone saf1_307 prokMSA_id:034485 AF128744 Soil ic01 prokMSA_id:046464 AF234081 #0319-6M1 prokMSA_id:017420 AF234091 #0319-7F21 prokMSA_id:042543 AF379691 clone SL18 prokMSA_id:023046 AF428603 clone CRD99-25 prokMSA_id:021728 AF428694 clone CRP99-40 prokMSA_id:052365 AF428975 clone CR99-35-17 prokMSA_id:034583 AF428977 clone CR99-35-19 prokMSA_id:030160 AF429001 clone CR99-35-43 prokMSA_id:049910 AF429014 clone CR99-35-56 prokMSA_id:049865 AF429252 clone CR99-2-66 prokMSA_id:075956 AF431070 alpha clone N12.20WL prokMSA_id:077058 AF431077 alpha clone C16.03WL prokMSA_id:075587 AF431090 alpha clone C17.20WL prokMSA_id:075501 AF431115 alpha clone S22.39WL prokMSA_id:019261 AJ233495 clone WR1104 prokMSA_id:029362 AJ233500 clone WR1120 prokMSA_id:024381 AJ233508 clone WR1144 prokMSA_id:035470 AJ292807 WR823 clone WR823 prokMSA_id:023488 AJ292824 WR893 clone WR893 prokMSA_id:039871 AJ292829 WR8119 clone WR8119 prokMSA_id:060156 AJ347059 clone TK25 prokMSA_id:060146 AJ347068 clone TK50 prokMSA_id:047028 AJ413602 alpha isolate dtb281 prokMSA_id:061718 AJ416226 clone Sta3-21 prokMSA_id:061699 AJ416247 clone Sta4-37 prokMSA_id:059992 AJ507497 clone VE12-98 prokMSA_id:077924 AJ512828 Alpha A-cf-CFA-6 isolate A-cf-CFA-6 prokMSA_id:057321 AJ518123 clone Mul01-45 prokMSA_id:057222 AJ518282 clone Mul2P3-36 prokMSA_id:057217 AJ518283 clone Mul2P3-43 prokMSA_id:056988 AJ518581 clone Qui4P2-39 prokMSA_id:056945 AJ518638 clone Sai1P1-75 prokMSA_id:056326 AY043641 alpha clone NOS7.164WL prokMSA_id:055734 AY043768 alpha clone NMS8.86WL prokMSA_id:085483 AY092356 clone BI74 prokMSA_id:062431 AY123963 S5-35 prokMSA_id:069180 AY143714 alpha clone Lu95 prokMSA_id:073548 AY145635 alpha FL10C12 prokMSA_id:069080 AY145641 alpha FL10E11 prokMSA_id:056236 AY145651 alpha FL12C10 prokMSA_id:069165 AY145657 alpha FL12E02 prokMSA_id:075523 AY157067 alpha isolate WA-12 prokMSA_id:077098 AY157068 alpha isolate WA-13 prokMSA_id:075719 AY157070 alpha isolate WC-12 prokMSA_id:075617 AY157073 alpha isolate WC-22 prokMSA_id:075768 AY157078 alpha isolate WD-13 prokMSA_id:076317 AY157081 alpha isolate WB-92 prokMSA_id:075949 AY157092 alpha isolate WB-19 prokMSA_id:076557 AY157093 alpha isolate WB-13 prokMSA_id:076750 AY157096 alpha isolate WB-12 prokMSA_id:075449 AY157105 alpha isolate WB-20 prokMSA_id:075004 AY157113 alpha isolate HS-93 prokMSA_id:076045 AY157128 alpha isolate PG-92 prokMSA_id:079621 AY191888 Acidisphaera sp. clone B179 prokMSA_id:084279 AY229979 Rhodopila globiformis strain 15740 prokMSA_id:093692 AY358013 Alpha iRV1 prokMSA_id:004405 D26234 soil from paddy field clone PAD47. prokMSA_id:004406 D26239 soil from paddy field clone PAD52. prokMSA_id:004409 M59066 Rhodopila globiformis str. 7950 DSM 161. prokMSA_id:041307 U45679 activated sludge AI353 prokMSA_id:004408 X68471 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.28.1.2.4 ABA.ACETI_SUBGROUP 222 seqs 2.28.1.2.4.002 OTU 17 seqs prokMSA_id:087740 AB110702 Acidomonas methanolica complete strain: NRIC0498 prokMSA_id:087858 AB110703 Acidomonas methanolica complete strain: LMG1667 prokMSA_id:087445 AB110704 Acidomonas methanolica complete strain: LMG1669 prokMSA_id:087580 AB110705 Acidomonas methanolica complete strain: LMG1735 prokMSA_id:087902 AB110706 Acidomonas methanolica complete strain: TS0101 prokMSA_id:087360 AB110707 Acidomonas methanolica complete strain: TS0114 prokMSA_id:087384 AB110708 Acidomonas methanolica complete strain: TS0117 prokMSA_id:087665 AB110709 Acidomonas methanolica complete strain: TS0121 prokMSA_id:087268 AB110710 Acidomonas methanolica complete strain: TS0128 prokMSA_id:087641 AB110711 Acidomonas methanolica complete strain: TS0131 prokMSA_id:087399 AB110712 Acidomonas methanolica complete strain: TS0135 prokMSA_id:087151 AB110713 Acidomonas methanolica complete strain: TS0143 prokMSA_id:087327 AB110714 Acidomonas methanolica complete strain: TS0145 prokMSA_id:087481 AB110715 Acidomonas methanolica complete strain: TS0156 prokMSA_id:004471 AF127398 Acidomonas methanolica str. SRI1214. prokMSA_id:004426 D30770 Acidomonas methanolica str. MB 58 IMET 10945 . prokMSA_id:004470 X77468 Acidomonas methanolica str. MB 58 IMET 10945 . 2.28.1.2.4.003 OTU 26 seqs prokMSA_id:022182 AB032349 Acetobacter estunensis prokMSA_id:051781 AB032350 Acetobacter orleanensis prokMSA_id:018427 AB032353 Acetobacter indonesiensis strain:LMG 1571 prokMSA_id:034202 AB032354 Acetobacter tropicalis strain:NRIC 0312 isolate:No.3 prokMSA_id:034622 AB032355 Acetobacter tropicalis strain:NRIC 0312 isolate:No.39 prokMSA_id:025818 AB052706 Acetobacter orientalis strain:21F-2 prokMSA_id:038754 AB052707 Acetobacter orientalis strain:B-7SC prokMSA_id:048935 AB052708 Acetobacter orientalis strain:4B-S16D prokMSA_id:039658 AB052709 Acetobacter orientalis strain:1B-M18A prokMSA_id:029322 AB052710 Acetobacter cibinongensis strain:4H-1 prokMSA_id:041554 AB052711 Acetobacter cibinongensis strain:1BM-18C prokMSA_id:025708 AB052715 Acetobacter indonesiensis strain:1B-M19D prokMSA_id:027422 AB052716 Acetobacter tropicalis strain:Y-1BM prokMSA_id:092224 AB117965 Acetobacter orientalis isolate:SF18-1 prokMSA_id:092777 AB117966 Acetobacter orientalis isolate:SF17-1 prokMSA_id:004453 AF127399 Acetobacter aceti str. SRI1321. prokMSA_id:058373 AJ419838 Acetobacter estunensis strain LMG 1626 prokMSA_id:058372 AJ419839 Acetobacter estunensis strain LMG 1572 prokMSA_id:058371 AJ419840 Acetobacter aceti strain LMG 1531 prokMSA_id:058369 AJ419841 Acetobacter indonesiensis strain LMG 1588 prokMSA_id:058364 AJ419842 Acetobacter tropicalis strain LMG 1663 prokMSA_id:058368 AJ419843 Acetobacter cerevisiae strain LMG 1625 prokMSA_id:056023 AJ419844 Acetobacter malorum strain LMG 1746 prokMSA_id:058362 AJ419845 Acetobacter orleanensis strain LMG 1583 prokMSA_id:004452 D30768 Acetobacter aceti JCM 7641 . prokMSA_id:004469 X74066 Acetobacter aceti NCIMB 8621 . 2.28.1.2.4.004 OTU 27 seqs prokMSA_id:004420 AB016865 Acetobacter sp. prokMSA_id:071559 AB095100 Gluconacetobacter persimmonensis prokMSA_id:004425 AF062474 Acetobacter PA2.2 str. PA2.2. prokMSA_id:004466 AF062475 Acetobacter ITDI2.1 str. ITDI2.1. prokMSA_id:004424 AF127403 str. IFR101. prokMSA_id:004449 AJ001631 Acetobacter oboediens str. LTH 2460 DSM 11826 . prokMSA_id:004465 AJ007698 Gluconacetobacter xylinus subsp. sucrofermentans str. BPR2001 JCM prokMSA_id:073040 AJ012466 Acetobacter sp. strain LMG 1582 prokMSA_id:004450 AJ012697 Acetobacter intermedius str. ZIM B025 JKD. prokMSA_id:004467 AJ012698 Acetobacter europaeus str. ZIM B028 V3. prokMSA_id:004451 AJ012699 Acetobacter intermedius str. ZIM B025 JK3. prokMSA_id:029592 AJ130726 Acetobacter sp. isolate ZIM B040 prokMSA_id:070348 AJ130730 Acetobacter sp. isolate ZIM B041 prokMSA_id:025128 AJ130732 Acetobacter sp. isolate ZIM B033 prokMSA_id:021095 AJ251110 Gluconacetobacter entanii strain LTH4560 prokMSA_id:056605 AJ316550 Gluconacetobacter sp. LMG 1689 prokMSA_id:062353 AJ316551 Gluconacetobacter sp. LMG 25 prokMSA_id:098382 AY180960 Gluconacetobacter sp. DST GL_01 prokMSA_id:096398 AY180961 Gluconacetobacter sp. DST GL_02 prokMSA_id:004463 X75619 Gluconacetobacter xylinus subsp. xylinus NCIMB 11664 . prokMSA_id:070289 X75619 A.xylinum prokMSA_id:071473 X75620 A.hansenii prokMSA_id:004423 X75620 Gluconacetobacter hansenii NCIMB 8746 . prokMSA_id:004419 Y14694 Acetobacter intermedius str. TF2 DSM 11804 . prokMSA_id:004455 Y15289 Acetobacter europaeus str. JK2. prokMSA_id:072244 Z21936 A.europaeus prokMSA_id:004454 Z21936 Gluconacetobacter europaeus str. DES11 DSM 6160 . 2.28.1.2.4.006 OTU 1 seq prokMSA_id:004448 AJ001427 str. from 400 mbsl of lake Baikal RUSSIA. 2.28.1.2.4.007 OTU 1 seq prokMSA_id:004446 Y07583 clone DA007. 2.28.1.2.4.008 OTU 1 seq prokMSA_id:004445 AF050533 clone WCHB1-87. 2.28.1.2.4.009 OTU 1 seq prokMSA_id:004442 AF127394 Acetobacter sp. str. SRI1939. 2.28.1.2.4.013 OTU 12 seqs prokMSA_id:004457 AB024492 Gluconobacter asaii IFO 3275. prokMSA_id:043353 AB063286 Gluconobacter cerinus strain:IFO 3267 prokMSA_id:028635 AB063287 Gluconobacter cerinus strain:IFO 3276 prokMSA_id:030702 AB063288 Gluconobacter cerinus strain:IAM 1832 prokMSA_id:004428 AF127396 Gluconobacter oxydans str. SRI1995. prokMSA_id:087779 AJ561122 Gluconobacter oxydans strain CECT 360 prokMSA_id:082086 AY206688 Gluconobacter oxydans strain 39PCAac1 prokMSA_id:004427 X73820 Gluconobacter oxydans subsp. oxydans DSM 3503 . prokMSA_id:072941 X73820 Gluconobacter oxydans prokMSA_id:004472 X80165 Gluconobacter cerinus prokMSA_id:004456 X80775 Gluconobacter cerinus IFO 3267 . prokMSA_id:004464 X82290 Gluconobacter frateurii IFO 3264 . 2.28.1.2.4.014 OTU 7 seqs prokMSA_id:065495 AB086016 Acetobacter pasteurianus strain:NCI 1193 prokMSA_id:092396 AB117968 Acetobacter pasteurianus isolate:OR56-1 prokMSA_id:004421 AJ001632 Acetobacter pomorum str. LTH 2458 DSM 11825 . prokMSA_id:058367 AJ419834 Acetobacter pasteurianus strain LMG 1629 prokMSA_id:058366 AJ419835 Acetobacter pomorum strain LMG 18848 prokMSA_id:004418 X71863 Acetobacter pasteurianus str. LMD 22.1 LMG 1262 . prokMSA_id:070298 X71863 A.pasteurianus 2.28.1.2.4.015 OTU 1 seq prokMSA_id:004411 Y07647 DA004 clone vii 2.28.1.2.4.016 OTU 12 seqs prokMSA_id:052420 AB025928 Asaia bogorensis strain:71 prokMSA_id:035660 AB025929 Asaia bogorensis strain:86 prokMSA_id:033826 AB025930 Asaia bogorensis strain:87 prokMSA_id:047931 AB025931 Asaia bogorensis strain:90 prokMSA_id:027254 AB025932 Asaia sp. 85 prokMSA_id:026550 AB035416 Asaia siamensis prokMSA_id:097066 AB102953 Asaia krungthepensis strain:AA08 prokMSA_id:096639 AB102954 Asaia krungthepensis strain:AA09 prokMSA_id:095258 AB102955 Asaia krungthepensis strain:AA06 prokMSA_id:017998 AF459454 Halobharath swaminathanianus strain PA 51 prokMSA_id:043009 AF459455 Halobharath swaminathanianus strain PA 12 prokMSA_id:092776 AY360335 Asaia siamensis 2.28.1.2.4.017 OTU 1 seq prokMSA_id:021346 AF445136 clone Tc76 2.28.1.2.4.018 OTU 1 seq prokMSA_id:021795 AF465654 alpha YNPRH71B 2.28.1.2.4.019 OTU 5 seqs prokMSA_id:046484 AB032351 Acetobacter lovaniensis prokMSA_id:028838 AB052712 Acetobacter roseisyzygii strain:9H-2 prokMSA_id:022265 AB052713 Acetobacter roseisyzygii strain:22F-1B prokMSA_id:048133 AB052714 Acetobacter roseisyzygii strain:1B-M19C prokMSA_id:058363 AJ419837 Acetobacter lovaniensis strain LMG 1617 2.28.1.2.4.021 OTU 1 seq prokMSA_id:029360 AJ292596 WD236 clone WD236 2.28.1.2.4.022 OTU 37 seqs prokMSA_id:092514 AB117967 Gluconacetobacter liquefaciens isolate:CJ121-1 prokMSA_id:023292 AF111841 Acetobacter sp. DOR prokMSA_id:004444 AF127391 Gluconacetobacter liquefaciens str. SRI244. prokMSA_id:004462 AF127392 Gluconacetobacter diazotrophicus str. SRI1990. prokMSA_id:004443 AF127393 Gluconacetobacter liquefaciens str. SRI1957. prokMSA_id:004441 AF127395 Gluconacetobacter liquefaciens str. SRI1994. prokMSA_id:004461 AF127397 Gluconacetobacter diazotrophicus str. SRI1212. prokMSA_id:004440 AF127400 str. SRI1941. prokMSA_id:004460 AF127401 Gluconacetobacter diazotrophicus str. SRI1206. prokMSA_id:004459 AF127402 Gluconacetobacter diazotrophicus str. SRI1205. prokMSA_id:004439 AF127404 Gluconacetobacter sacchari str. SRI1951. prokMSA_id:004438 AF127405 Gluconacetobacter sacchari str. SRI1230. prokMSA_id:004437 AF127406 Gluconacetobacter sacchari str. SRI1216. prokMSA_id:004436 AF127407 Gluconacetobacter sacchari str. SRI1794. prokMSA_id:004435 AF127408 Gluconacetobacter sacchari str. SRI1853. prokMSA_id:004434 AF127409 Gluconacetobacter sacchari str. SRI1255. prokMSA_id:004433 AF127410 Gluconacetobacter sacchari str. SRI1953. prokMSA_id:004432 AF127411 Gluconacetobacter sacchari str. IF9701. prokMSA_id:004431 AF127412 Gluconacetobacter sacchari str. IF2-6. prokMSA_id:004430 AF127413 Gluconacetobacter sacchari str. IF9645. prokMSA_id:036976 AF192761 Acetobacter azotocaptans prokMSA_id:044239 AJ292611 WD2108 clone WD2108 prokMSA_id:023190 AJ292618 WD256 clone WD256 prokMSA_id:056487 AY145632 alpha FL10C02 prokMSA_id:085095 AY230808 Gluconacetobacter diazotrophicus clone UAP-Cf51 prokMSA_id:083463 AY230809 Gluconacetobacter diazotrophicus clone UAP-Ac7 prokMSA_id:085491 AY230810 Gluconacetobacter diazotrophicus clone UAP-Ac10 prokMSA_id:084352 AY230811 Gluconacetobacter diazotrophicus clone CFNE-550 prokMSA_id:086451 AY230812 Gluconacetobacter diazotrophicus clone CFN-Cf52 prokMSA_id:083645 AY230813 Gluconacetobacter diazotrophicus clone Psp22 prokMSA_id:082919 AY230814 Gluconacetobacter diazotrophicus clone PAl3 prokMSA_id:082490 AY230815 Gluconacetobacter diazotrophicus clone 1-05 prokMSA_id:085459 AY230816 Gluconacetobacter diazotrophicus clone 4-02 prokMSA_id:072097 X75617 A.liquefaciens prokMSA_id:004429 X75617 Gluconacetobacter liquefaciens IFO 12388 . prokMSA_id:004458 X75618 Gluconacetobacter diazotrophicus ATCC 49037 . prokMSA_id:073674 X75618 A.diazotrophicus 2.28.1.2.4.023 OTU 1 seq prokMSA_id:032348 AJ292602 WD271 clone WD271 2.28.1.2.4.024 OTU 1 seq prokMSA_id:032874 AJ292606 WD295 clone WD295 2.28.1.2.4.025 OTU 2 seqs prokMSA_id:041257 AB032352 Acetobacter peroxydans prokMSA_id:058365 AJ419836 Acetobacter peroxydans strain LMG 1633 2.28.1.2.4.026 OTU 1 seq prokMSA_id:036562 AF445716 alpha clone SM2C02 2.28.1.2.4.027 OTU 1 seq prokMSA_id:039419 AF408324 Acetobacteraceae clone KL-2-4-8 2.28.1.2.4.028 OTU 1 seq prokMSA_id:058559 AF543832 Gluconobacter oxydans 2.28.1.2.4.029 OTU 1 seq prokMSA_id:055420 AY063701 clone RS500-16 2.28.1.2.4.030 OTU 1 seq prokMSA_id:062432 AY123965 S7-13 2.28.1.2.4.031 OTU 1 seq prokMSA_id:065715 AF507667 soil clone C1157 2.28.1.2.4.032 OTU 1 seq prokMSA_id:067722 AB071665 Tistrella mobilis 2.28.1.2.4.033 OTU 4 seqs prokMSA_id:067750 AB056318 Kozakia baliensis strain:Ri-1 prokMSA_id:067747 AB056319 Kozakia baliensis strain:Wa-5 prokMSA_id:067746 AB056320 Kozakia baliensis strain:Wa-2 prokMSA_id:067745 AB056321 Kozakia baliensis strain:Yo-3 2.28.1.2.4.034 OTU 1 seq prokMSA_id:070789 AY145654 alpha FL12D07 2.28.1.2.4.035 OTU 1 seq prokMSA_id:082659 AY250855 alpha clone BPS153 2.28.1.2.4.036 OTU 1 seq prokMSA_id:091691 AB110421 Zucharibacter floricola 2.28.1.2.4.999 poor quality 53 seqs prokMSA_id:046239 AB032356 Acetobacter indonesiensis strain:NRIC 0313 prokMSA_id:043153 AF429069 clone CR99-7-35 prokMSA_id:076427 AF431069 alpha clone N12.18WL prokMSA_id:075943 AF431088 alpha clone C17.08WL prokMSA_id:075077 AF431141 alpha clone C31.04SM prokMSA_id:077037 AF431163 alpha clone S37.19SM prokMSA_id:076660 AF431196 alpha clone S51.11PG prokMSA_id:075001 AF431200 alpha clone S51.26PG prokMSA_id:016451 AF448266 clone DJAT-290 prokMSA_id:058095 AF498725 Ellin343 prokMSA_id:065607 AF507794 soil clone S1239 prokMSA_id:018807 AJ012464 Acetobacter sp. strain LMG 1517 prokMSA_id:028262 AJ012465 Acetobacter sp. strain LMG 1688 prokMSA_id:029616 AJ012467 Acetobacter sp. strain LMG 1545t1 prokMSA_id:070267 AJ012540 Acetobacter sp. strain LMG 1545t2 prokMSA_id:072738 AJ012541 Acetobacter sp. strain LMG 1496 prokMSA_id:074665 AJ012543 Acetobacter sp. strain LMG 1524 prokMSA_id:070919 AJ012544 Acetobacter sp. strain LMG 1529 prokMSA_id:074306 AJ012545 Acetobacter sp. strain LMG 1512 prokMSA_id:004468 AJ130727 Acetobacter SegI/4 str. SegI/4. prokMSA_id:047610 AJ130728 Acetobacter sp. strain LMG 1543 prokMSA_id:046122 AJ130729 Acetobacter sp. strain LMG 1531 prokMSA_id:031317 AJ130731 Acetobacter sp. isolate ZIM B034 prokMSA_id:027070 AJ233468 clone WR102 prokMSA_id:053295 AJ233471 clone WR107 prokMSA_id:040463 AJ233497 clone WR1109 prokMSA_id:043507 AJ233499 clone WR1117 prokMSA_id:070589 AJ286738 Acetobacter sp. isolate DGGE band O prokMSA_id:072602 AJ286739 Acetobacter sp. isolate DGGE band P prokMSA_id:047774 AJ289935 1404-44 prokMSA_id:049009 AJ289960 404-5 prokMSA_id:031739 AJ292818 WR875 clone WR875 prokMSA_id:045044 AJ292826 WR8105 clone WR8105 prokMSA_id:050057 AJ292849 WR8115 clone WR8115 prokMSA_id:042672 AJ292850 WR8170 clone WR8170 prokMSA_id:062346 AJ316549 Gluconacetobacter sp. LMG 1510 prokMSA_id:062354 AJ316552 Gluconacetobacter sp. DSM 46604 prokMSA_id:061592 AY043609 alpha clone NOW2.128WL prokMSA_id:061589 AY043613 alpha clone NOW2.4WL prokMSA_id:061577 AY043627 alpha clone NOS7.10WL prokMSA_id:073798 AY145638 alpha FL10D09 prokMSA_id:074036 AY145640 alpha FL10E04 prokMSA_id:073412 AY145648 alpha FL12C01 prokMSA_id:069856 AY145652 alpha FL12D03 prokMSA_id:056157 AY145656 alpha FL12D11 prokMSA_id:056560 AY145684 alpha TS2D2 prokMSA_id:076742 AY162828 alpha clone FL13G07 prokMSA_id:076162 AY162829 alpha clone FL13G09 prokMSA_id:076570 AY162832 alpha clone FL13H12 prokMSA_id:080624 AY191896 clone BG13 prokMSA_id:095400 AY395106 alpha clone B16R prokMSA_id:004447 X97085 str. TM120. prokMSA_id:004422 X97089 str. TM212. 2.28.1.2.5 ACDP.CRYPTUM_SUBGROUP 92 seqs 2.28.1.2.5.001 OTU 13 seqs prokMSA_id:004493 AB006711 Acidiphilium multivorum AIU 301 . prokMSA_id:004495 AB006712 Acidiphilium multivorum AIU 303. prokMSA_id:004496 AB023643 Acidiphilium MBIC4287 str. MBIC4287. prokMSA_id:072048 AF352794 Acidiphilium sp. MPH3 prokMSA_id:028295 AF376023 Acidiphilium sp. NO-14 prokMSA_id:063337 AF523874 clone RCP1-78 prokMSA_id:047077 AY040740 Acidiphilium sp. SJH prokMSA_id:004502 D30773 Acidiphilium cryptum ATCC 33463 . prokMSA_id:004477 D30775 Acidiphilium organovorum ATCC 43141 . prokMSA_id:004476 X75265 Acidiphilium cryptum str. B-Het4. prokMSA_id:004490 X86771 clone cOS6. prokMSA_id:004505 X91796 Acidiphilium sp. str. GS18h. prokMSA_id:004503 Y18446 Acidiphilium cryptum str. Kuesel IFV. 2.28.1.2.5.002 OTU 3 seqs prokMSA_id:004498 AF047648 clone TRB3. prokMSA_id:040217 AF376026 Acidiphilium sp. NO-17 prokMSA_id:063339 AF523873 clone RCP1-25 2.28.1.2.5.003 OTU 1 seq prokMSA_id:004497 D30769 Acidiphilium sp. str. C-1. 2.28.1.2.5.004 OTU 2 seqs prokMSA_id:004491 D30771 Acidocella aminolytica str. 101 JCM 8796. prokMSA_id:004492 X91797 Acidocella sp. str. GS19h. 2.28.1.2.5.005 OTU 6 seqs prokMSA_id:004485 AF047643 clone TRB25. prokMSA_id:051452 AF376022 Acidiphilium sp. NO-13 prokMSA_id:004480 D30772 Acidiphilium angustum ATCC 35903 . prokMSA_id:004484 D30776 Acidiphilium rubrum ATCC 35905 . prokMSA_id:004486 D86508 Acidiphilium sp. str. St1-5. prokMSA_id:004487 D86509 Acidiphilium sp. str. St1-7. 2.28.1.2.5.006 OTU 1 seq prokMSA_id:004479 D86511 Acidiphilium acidophilum ATCC 27807 . 2.28.1.2.5.007 OTU 1 seq prokMSA_id:004478 AF027047 clone OPB40. 2.28.1.2.5.008 OTU 1 seq prokMSA_id:004475 AF082659 str. SRS1. 2.28.1.2.5.009 OTU 3 seqs prokMSA_id:070861 AF531477 Acidocella sp. IS10 prokMSA_id:004474 D30774 Acidocella facilis str. PW2 ATCC 35904 . prokMSA_id:045483 D86510 Acidocella sp. 2.28.1.2.5.010 OTU 2 seqs prokMSA_id:050531 AF253412 Acidocella sp. WJB-3 prokMSA_id:022545 AF253413 Acidocella sp. LGS-3 2.28.1.2.5.011 OTU 1 seq prokMSA_id:039575 AF376021 Acidocella sp. NO-12 2.28.1.2.5.012 OTU 2 seqs prokMSA_id:043037 AJ292598 WD248 clone WD248 prokMSA_id:043529 AJ292617 WD219 clone WD219 2.28.1.2.5.013 OTU 1 seq prokMSA_id:053994 AJ292597 WD238 clone WD238 2.28.1.2.5.999 poor quality 55 seqs prokMSA_id:018710 AB040813 Thiobacillus sp. KU2-11 prokMSA_id:070949 AF352793 Acidiphilium sp. MPH2 prokMSA_id:077188 AF431154 alpha clone C32.36SM prokMSA_id:067670 AF485391 clone G4 prokMSA_id:073699 AH001557 Acidiphilium angustum prokMSA_id:074651 AH001558 Acidiphilium cryptum prokMSA_id:072633 AH001559 Acidiphilium facilis prokMSA_id:070083 AH001560 Acidiphilium rubrum prokMSA_id:072804 AH001561 Acidiphilium sp. QBP prokMSA_id:070095 AH001790 Thiobacillus acidophilus prokMSA_id:050724 AJ233480 clone WR147 prokMSA_id:041439 AJ233484 clone WR158 prokMSA_id:045053 AJ233485 clone WR165 prokMSA_id:031764 AJ233486 clone WR168 prokMSA_id:045017 AJ292812 WR849 clone WR849 prokMSA_id:016803 AJ292814 WR862 clone WR862 prokMSA_id:021180 AJ292819 WR880 clone WR880 prokMSA_id:020238 AJ292827 WR8110 clone WR8110 prokMSA_id:029931 AJ292840 WR8164 clone WR8164 prokMSA_id:073125 AJ517430 alpha isolate DGGE B23 prokMSA_id:072802 AJ517431 alpha isolate DGGE B24 prokMSA_id:057437 AJ517432 alpha isolate DGGE B25 prokMSA_id:074103 AJ517433 alpha isolate DGGE B29 prokMSA_id:074454 AJ517434 alpha isolate DGGE B30 prokMSA_id:072951 AJ517435 alpha isolate DGGE B31 prokMSA_id:056610 AJ517436 alpha isolate DGGE B32 prokMSA_id:057431 AJ517437 alpha isolate DGGE B38 prokMSA_id:057433 AJ517438 alpha isolate DGGE B45 prokMSA_id:057432 AJ517439 alpha isolate DGGE B47 prokMSA_id:074272 AJ517440 alpha isolate DGGE B48 prokMSA_id:066885 AY096126 clone M1-8 prokMSA_id:066871 AY096140 clone M2-70 prokMSA_id:066851 AY096163 clone F2-27 prokMSA_id:080660 AY192249 alpha clone P1-1G prokMSA_id:004481 M79363 Acidiphilium angustum ATCC 35903 . prokMSA_id:070056 M79364 Acidiphilium angustum prokMSA_id:031604 M79365 Acidiphilium angustum prokMSA_id:004489 M79366 Acidiphilium cryptum ATCC 33463 . prokMSA_id:049107 M79367 Acidiphilium cryptum prokMSA_id:070780 M79368 Acidiphilium cryptum prokMSA_id:004488 M79369 Acidocella facilis str. PW2 ATCC 35904 . prokMSA_id:074190 M79370 Acidiphilium facilis prokMSA_id:070452 M79371 Acidiphilium facilis prokMSA_id:070995 M79377 Acidiphilium rubrum prokMSA_id:069943 M79379 Acidiphilium rubrum prokMSA_id:004500 M79393 Acidiphilium sp. str. QBP. prokMSA_id:071485 M79394 Acidiphilium sp. QBP prokMSA_id:073623 M79395 Acidiphilium sp. QBP prokMSA_id:004473 M79399 Acidiphilium acidophilum ATCC 27807 . prokMSA_id:070938 M79400 Thiobacillus acidophilus prokMSA_id:004482 X07839 Acidiphilium acidophilum. prokMSA_id:004501 X78643 clone SMK2321. prokMSA_id:004499 X84609 str. SBR2078. prokMSA_id:004494 Y18445 Acidiphilium cryptum DSM 2389. prokMSA_id:004504 Y18447 Acidiphilium cryptum DSM 9467. 2.28.1.3 STR.SBR1030 2 seqs 2.28.1.3.999 poor quality 2 seqs prokMSA_id:073137 AF245317 SA2 prokMSA_id:004506 X84473 str. SBR1030. 2.28.1.4 AZOSPIRILLUM_GROUP 641 seqs 2.28.1.4.1 R.RUBRUM_SUBGROUP 73 seqs 2.28.1.4.1.001 OTU 3 seqs prokMSA_id:066304 AB074520 Aquaspirillum itersonii subsp. nipponicum prokMSA_id:098640 AY379976 Aquaspirillum sp. AHL 4 prokMSA_id:004517 Z29620 Aquaspirillum itersonii NCIMB 9070. 2.28.1.4.1.002 OTU 2 seqs prokMSA_id:068790 AF487434 Rhodospirillum photometricum prokMSA_id:004516 D30777 Rhodospirillum photometricum str. E-11. 2.28.1.4.1.004 OTU 3 seqs prokMSA_id:004512 AB000479 IFO 14922. prokMSA_id:004513 AB000480 IFO 13617. prokMSA_id:056046 AB074521 Aquaspirillum peregrinum subsp. integrum 2.28.1.4.1.005 OTU 2 seqs prokMSA_id:004508 D30778 Rhodospirillum rubrum str. ATH 1.1.1; S.1 ATCC 11170 . prokMSA_id:004511 X87278 Rhodospirillum rubrum. 2.28.1.4.1.006 OTU 1 seq prokMSA_id:004509 X99671 Rhodospira trueperi. 2.28.1.4.1.009 OTU 1 seq prokMSA_id:020957 AF143820 clone 4-Org1-12 2.28.1.4.1.010 OTU 1 seq prokMSA_id:021030 AY038924 Marine SE96 2.28.1.4.1.013 OTU 1 seq prokMSA_id:032531 AF143832 clone 4-Org2-25 2.28.1.4.1.014 OTU 1 seq prokMSA_id:038746 AF231419 Humic substances-degrading HS341 2.28.1.4.1.015 OTU 1 seq prokMSA_id:055857 AJ298879 Roseospira marina strain CE2105 2.28.1.4.1.016 OTU 1 seq prokMSA_id:040230 AF371866 clone p-1030-a5 2.28.1.4.1.017 OTU 2 seqs prokMSA_id:043239 AF411851 Azospirillum sp. 5C variant 1 prokMSA_id:045811 AF413109 Azospirillum sp. 5C variant 2 2.28.1.4.1.018 OTU 1 seq prokMSA_id:052534 AF231417 Humic substances-degrading HS296 2.28.1.4.1.022 OTU 15 seqs prokMSA_id:004514 AB024595 str. MBIC1474. prokMSA_id:050953 AF143821 clone 4-Org1-13 prokMSA_id:025696 AF143826 clone 4-Org1-58 prokMSA_id:018725 AF143827 clone 4-Org1-59 prokMSA_id:035557 AF358664 Thalassospira lucentensis prokMSA_id:027957 AF359545 Marine SCRIPPS_94 prokMSA_id:068295 AF361674 clone MN13BT4-48 prokMSA_id:067583 AF493974 Alpha Med4c1:1 prokMSA_id:085257 AF500210 Alpha CJ11073 prokMSA_id:079518 AF505720 Alpha UMB1A prokMSA_id:060364 AF513476 Rhodospirillaceae PH30 prokMSA_id:043487 AJ294358 alphaproteobacterium 4alphavs17 strain alphavs17 prokMSA_id:079281 AY186195 alpha clone P_wp0211 prokMSA_id:080090 AY189744 Marine B-4 prokMSA_id:080223 AY189753 Marine M-5 2.28.1.4.1.023 OTU 1 seq prokMSA_id:077884 AJ401208 Roseospira sp. AT2115 2.28.1.4.1.024 OTU 1 seq prokMSA_id:078030 AJ298880 Roseospira navarrense strain navarrense 2.28.1.4.1.025 OTU 1 seq prokMSA_id:078776 AJ536878 clone JG30-KF-AS50 2.28.1.4.1.026 OTU 1 seq prokMSA_id:090756 AY223760 Fe-oxidizing FO3 2.28.1.4.1.999 poor quality 34 seqs prokMSA_id:073192 AF034930 Alpha 'Egg clone D42' prokMSA_id:024476 AF034931 Alpha 'Egg clone D37' prokMSA_id:043489 AF055829 Marine 'Tomales Bay lg wh' prokMSA_id:042934 AF231412 Humic substances-degrading HS141 prokMSA_id:032510 AF231416 Humic substances-degrading HS209 prokMSA_id:018776 AF251773 Alpha E-lthf1.L2p prokMSA_id:021052 AF287019 alpha EC-A51 prokMSA_id:031814 AF321058 U62 prokMSA_id:068290 AF361679 clone MN13BT4-60 prokMSA_id:075455 AF432816 clone C33.35SM prokMSA_id:049387 AF460901 Marine SIMO-IS128 prokMSA_id:041474 AF460904 Marine SIMO-IS193 prokMSA_id:054856 AF460909 Marine SIMO-IS195 prokMSA_id:051982 AF460911 Marine SIMO-IS133 prokMSA_id:028296 AF460913 Marine SIMO-IS198 prokMSA_id:023600 AF460941 Marine SIMO-IS200 prokMSA_id:016422 AF460943 Marine SIMO-IS202 prokMSA_id:027962 AF460944 Marine SIMO-IS203 prokMSA_id:046486 AF460961 Marine SIMO-IS220 prokMSA_id:016966 AF460962 Marine SIMO-IS221 prokMSA_id:067256 AF495432 clone F13.36 prokMSA_id:074786 AF544947 alpha clone 4-19 prokMSA_id:055978 AF546909 clone E5-46-BF1-152 prokMSA_id:057875 AF546911 clone E5-46-BF1-154 prokMSA_id:020916 AH005033 marine 5' prokMSA_id:070658 AJ000989 Roseospira mediosalina prokMSA_id:073197 AY124484 S5-22 prokMSA_id:090678 AY323179 alpha clone A114-6 prokMSA_id:004515 D15064 Rhodospirillum sp. str. E-12. prokMSA_id:004507 M32020 Rhodospirillum rubrum str. ATH 1.1.1; S.1 ATCC 11170 . prokMSA_id:004510 M55497 Rhodospirillum rubrum str. ATH 1.1.1; S.1 ATCC 11170 . prokMSA_id:043257 U87480 marine prokMSA_id:051892 U87504 marine 5' prokMSA_id:069072 Z77612 2-100 C19 2.28.1.4.2 MAG.GRYPHISWALDENSE_SUBGROUP 166 seqs 2.28.1.4.2.001 OTU 1 seq prokMSA_id:004539 AF104473 unnamed organism. 2.28.1.4.2.002 OTU 1 seq prokMSA_id:004536 AF159662 clone HstpL24. 2.28.1.4.2.003 OTU 1 seq prokMSA_id:004535 D14433 Phaeospirillum fulvum str. 1360 NCIMB 11762 . 2.28.1.4.2.004 OTU 2 seqs prokMSA_id:004527 NONE Magnetospirillum gryphiswaldense str. MSR-1 DSM 6361 . prokMSA_id:004532 Y10109 Magnetospirillum gryphiswaldense str. MSR-1 DSM 6361 . 2.28.1.4.2.005 OTU 2 seqs prokMSA_id:004530 Y17389 Magnetospirillum sp. str. MSM-3. prokMSA_id:004531 Y17390 Magnetospirillum sp. str. MSM-4. 2.28.1.4.2.006 OTU 1 seq prokMSA_id:004529 AF170352 Dechlorospirillum WD str. WD. 2.28.1.4.2.007 OTU 6 seqs prokMSA_id:035227 AB033746 Phenol-degrading denitrifying spirillum CC-26 prokMSA_id:004525 D17514 Magnetospirillum sp. str. AMB-1. prokMSA_id:004526 D17515 Magnetospirillum sp. str. MGT-1. prokMSA_id:004519 NONE Magnetospirillum magnetotacticum DSM 3856 . prokMSA_id:004524 Y10110 Magnetospirillum magnetotacticum DSM 3856 . prokMSA_id:004522 Y17391 Magnetospirillum sp. str. MSM-6. 2.28.1.4.2.009 OTU 1 seq prokMSA_id:004520 AF159663 clone HstpL69. 2.28.1.4.2.010 OTU 1 seq prokMSA_id:017249 AJ310386 strain NS0265 2.28.1.4.2.011 OTU 1 seq prokMSA_id:017677 AH005030 marine 5' 2.28.1.4.2.012 OTU 5 seqs prokMSA_id:017960 AF422632 clone d021 prokMSA_id:021627 AF422680 clone d157 prokMSA_id:035285 AF422687 clone d163 prokMSA_id:089350 AY328742 DSSD44 prokMSA_id:090210 AY328755 DSSD57 2.28.1.4.2.013 OTU 1 seq prokMSA_id:019159 AF424294 alpha MERTZ_21CM_225 2.28.1.4.2.014 OTU 2 seqs prokMSA_id:019497 AF422617 clone t047 prokMSA_id:065660 AF507732 soil clone S157 2.28.1.4.2.015 OTU 1 seq prokMSA_id:027559 AF324207 alpha clone pA419 2.28.1.4.2.016 OTU 1 seq prokMSA_id:031550 AF293002 Green Bay ferromanganous micronodule MNH4 2.28.1.4.2.017 OTU 2 seqs prokMSA_id:044956 AJ295468 rape rhizosphere wr0007 prokMSA_id:033368 AJ295561 rape rhizosphere wr0200 2.28.1.4.2.018 OTU 1 seq prokMSA_id:036742 AJ252627 Agricultural soil clone SC-I-27 2.28.1.4.2.019 OTU 1 seq prokMSA_id:037406 AJ292593 WD229 clone WD229 2.28.1.4.2.021 OTU 13 seqs prokMSA_id:058109 AF498715 Ellin333 prokMSA_id:074114 AF498739 Ellin357 prokMSA_id:058088 AF498742 Ellin360 prokMSA_id:058087 AF498743 Ellin361 prokMSA_id:004523 AJ001426 str. from 400 mbsl of lake Baikal RUSSIA. prokMSA_id:093885 AJ581587 alpha clone KCM-B-42 prokMSA_id:082192 AY192033 alpha clone G26-GM4R prokMSA_id:081901 AY192068 alpha clone P31-GM4R-t prokMSA_id:088702 AY328701 DSSD1 prokMSA_id:089799 AY328708 DSSD9 prokMSA_id:089834 AY328726 DSSD27 prokMSA_id:088147 AY328732 DSSD33 prokMSA_id:088596 AY328843 Drinking water MB12 2.28.1.4.2.022 OTU 1 seq prokMSA_id:040077 AF355036 alpha Arctic95B-2 2.28.1.4.2.023 OTU 1 seq prokMSA_id:047123 AF194378 alpha kpc47rc 2.28.1.4.2.024 OTU 1 seq prokMSA_id:047933 AF445724 alpha clone SM2D12 2.28.1.4.2.025 OTU 1 seq prokMSA_id:055583 AF507773 soil clone S1181 2.28.1.4.2.026 OTU 1 seq prokMSA_id:050004 AJ318133 alpha clone BIfdii21 2.28.1.4.2.027 OTU 1 seq prokMSA_id:060135 AJ347085 clone TK94 2.28.1.4.2.028 OTU 1 seq prokMSA_id:060649 AF406524 alpha clone AEGEAN_205 2.28.1.4.2.029 OTU 1 seq prokMSA_id:062963 AF527587 clone LPB60 2.28.1.4.2.030 OTU 1 seq prokMSA_id:065544 AY095423 yard-trimming-compost clone S-58 2.28.1.4.2.031 OTU 2 seqs prokMSA_id:066183 AJ488082 clone IIA-1 prokMSA_id:066169 AJ488096 clone IIIA-9 2.28.1.4.2.032 OTU 1 seq prokMSA_id:066543 AY100539 clone cvf65027 2.28.1.4.2.033 OTU 1 seq prokMSA_id:068789 AF487433 Phaeospirillum sp. MPA1 2.28.1.4.2.034 OTU 1 seq prokMSA_id:071781 AF498713 Ellin331 2.28.1.4.2.035 OTU 1 seq prokMSA_id:075071 AJ519623 alpha clone Sh765B-TzT-31 2.28.1.4.2.036 OTU 1 seq prokMSA_id:075830 AY159177 RO_clone_28C 2.28.1.4.2.037 OTU 1 seq prokMSA_id:075867 AY162827 alpha clone FL13G06 2.28.1.4.2.038 OTU 1 seq prokMSA_id:076512 AY162830 alpha clone FL13G10 2.28.1.4.2.039 OTU 1 seq prokMSA_id:077143 AY159187 RO_clone_32B 2.28.1.4.2.040 OTU 4 seqs prokMSA_id:077417 AF524854 26-4b1 prokMSA_id:077341 AF524855 26-4b9 prokMSA_id:077302 AF524861 K-5b5 prokMSA_id:077512 AF524863 26-4b1 2.28.1.4.2.041 OTU 1 seq prokMSA_id:078316 AY171615 Dechlorospirillum sp. SN1 2.28.1.4.2.042 OTU 1 seq prokMSA_id:082393 AY192050 alpha clone P78-GM4R-t 2.28.1.4.2.043 OTU 1 seq prokMSA_id:088278 AJ567596 alpha clone MBAE43 2.28.1.4.2.044 OTU 1 seq prokMSA_id:088580 AJ567552 alpha clone MBMPE38 2.28.1.4.2.045 OTU 1 seq prokMSA_id:089563 AJ567563 alpha clone MBMPE50 2.28.1.4.2.046 OTU 2 seqs prokMSA_id:090336 AJ567553 alpha clone MBMPE39 prokMSA_id:090230 AJ567562 alpha clone MBMPE49 2.28.1.4.2.047 OTU 1 seq prokMSA_id:090525 AF443583 clone C-F-7 2.28.1.4.2.048 OTU 1 seq prokMSA_id:091865 AY337602 Alpha PX3.14 2.28.1.4.2.049 OTU 1 seq prokMSA_id:093710 AB111107 LS-1 2.28.1.4.2.050 OTU 1 seq prokMSA_id:094247 AB111108 LS-2 2.28.1.4.2.999 poor quality 88 seqs prokMSA_id:004528 AB000481 unnamed organism. prokMSA_id:079947 AB089951 clone:HN62 prokMSA_id:089781 AB111838 prokMSA_id:069682 AF016529 HRS-16 prokMSA_id:030603 AF078182 Grassland soil clone saf1_110 prokMSA_id:070600 AF124653 Px12-DGGE band a prokMSA_id:021409 AF245343 SA28 prokMSA_id:053200 AF245348 SA33 prokMSA_id:033724 AF245654 alpha NAC60-14 prokMSA_id:048231 AF268862 glc19 prokMSA_id:018179 AF289871 alpha Kmlps0-14 prokMSA_id:034102 AF289900 alpha Kmlps6-2 prokMSA_id:069868 AF301413 peat bog BS6 prokMSA_id:031655 AF311980 Alpha mB4 prokMSA_id:021690 AF311981 Alpha mB27 prokMSA_id:043189 AF311982 Alpha mB29 prokMSA_id:038618 AF312674 alpha M20 prokMSA_id:028322 AF332258 clone C12-15 prokMSA_id:068216 AF365506 clone BM89MF5BD11 prokMSA_id:068173 AF365558 clone BT49MF4BC2 prokMSA_id:068172 AF365560 clone BT49MF4BC6 prokMSA_id:068967 AF392627 clone CDC5 prokMSA_id:052877 AF412384 prokMSA_id:041570 AF429158 clone CR99-24-48 prokMSA_id:076028 AF431059 alpha clone N11.123WL prokMSA_id:076032 AF431075 alpha clone N12.57WL prokMSA_id:075796 AF431078 alpha clone C16.17WL prokMSA_id:076069 AF431106 alpha clone S21.49WL prokMSA_id:076784 AF431110 alpha clone S22.27WL prokMSA_id:075915 AF431113 alpha clone S22.30WL prokMSA_id:076180 AF431114 alpha clone S22.31WL prokMSA_id:076759 AF431116 alpha clone S22.40WL prokMSA_id:075099 AF431117 alpha clone S22.58WL prokMSA_id:075612 AF431119 alpha clone N26.115SM prokMSA_id:074991 AF431121 alpha clone N26.126SM prokMSA_id:075177 AF431122 alpha clone N26.129SM prokMSA_id:074904 AF431130 alpha clone N26.97SM prokMSA_id:075469 AF431140 alpha clone C31.02SM prokMSA_id:075787 AF431143 alpha clone C31.24SM prokMSA_id:075945 AF431144 alpha clone C31.25SM prokMSA_id:075318 AF431146 alpha clone C31.36SM prokMSA_id:074954 AF431147 alpha clone C31.37SM prokMSA_id:076369 AF431180 alpha clone N42.34PG prokMSA_id:074906 AF431187 alpha clone C46.71PG prokMSA_id:076591 AF431192 alpha clone C47.24PG prokMSA_id:076197 AF431194 alpha clone C47.42PG prokMSA_id:076407 AF431199 alpha clone S51.20PG prokMSA_id:039440 AF432343 alpha 4%N-26d-20 prokMSA_id:064844 AF434087 alpha clone P3-1-22 prokMSA_id:024412 AF446319 FL14H01 prokMSA_id:073700 AF498728 Ellin346 prokMSA_id:065598 AF507800 soil clone S1250 prokMSA_id:064350 AF521029 clone Dpcom25 prokMSA_id:017618 AJ225344 Alpha species ; clone 33 prokMSA_id:016660 AJ225352 Alpha species ; clone 44 prokMSA_id:033881 AJ233483 clone WR156 prokMSA_id:036292 AJ289106 Rhodospirillum fulvum strain DSM 13 234 prokMSA_id:070890 AJ289947 1605-3 prokMSA_id:039598 AJ292833 WR8142 clone WR8142 prokMSA_id:021651 AJ292851 WR8153 clone WR8153 prokMSA_id:038555 AJ292852 WR8156 clone WR8156 prokMSA_id:033990 AJ299578 CZ361 prokMSA_id:018558 AJ301574 alpha GR-371.III.81 prokMSA_id:059994 AJ507496 clone VE1-98 prokMSA_id:017202 AY038490 alpha clone CD1F11 prokMSA_id:033251 AY038570 alpha clone CD2D5 prokMSA_id:061593 AY043607 alpha clone NOW2.110WL prokMSA_id:055786 AY043634 alpha clone NOS7.128WL prokMSA_id:056405 AY043635 alpha clone NOS7.134WL prokMSA_id:061470 AY043755 alpha clone SMW4.4WL prokMSA_id:061469 AY043756 alpha clone SMW4.41WL prokMSA_id:061463 AY043765 alpha clone NMS8.4WL prokMSA_id:061435 AY043799 gamma clone SMW4.31WL prokMSA_id:066669 AY090123 alpha clone IAFDn48 prokMSA_id:066840 AY096174 clone F2-45 prokMSA_id:065442 AY102344 clone a13163 prokMSA_id:075388 AY157124 alpha isolate HS-61 prokMSA_id:077114 AY159188 RO_clone_4A prokMSA_id:080770 AY192254 alpha clone P2-9F prokMSA_id:089994 AY323145 alpha clone A115-32 prokMSA_id:093879 AY357962 alpha cEV19 prokMSA_id:004518 M58171 Magnetospirillum magnetotacticum. prokMSA_id:004540 M59065 Phaeospirillum fulvum str. 1360 ATCC 15798. prokMSA_id:004534 M59067 Phaeospirillum molischianum ATCC 14031 . prokMSA_id:004521 U68611 clone M25. prokMSA_id:004533 X84581 str. SBR2042. prokMSA_id:004537 X97081 str. TM69. prokMSA_id:004538 X97086 str. TM137. 2.28.1.4.3 ENVIRONMENTAL_CLONE_SAR116 1 seq 2.28.1.4.3.999 poor quality 1 seq prokMSA_id:004541 L35463 clone SAR 116. 2.28.1.4.4 AZS.LIPOFERUM_SUBGROUP 401 seqs 2.28.1.4.4.001 OTU 1 seq prokMSA_id:004588 Y12596 clone DA111. 2.28.1.4.4.002 OTU 1 seq prokMSA_id:004587 X97078 str. TM12. 2.28.1.4.4.003 OTU 1 seq prokMSA_id:004586 AF170353 Azospirillum TTI str. TTI. 2.28.1.4.4.004 OTU 3 seqs prokMSA_id:004584 AF001637 clone OCS24. prokMSA_id:068995 AF268236 EBAC37G09 ; tRNA-Ile complete ; and 23S prokMSA_id:004585 U70678 clone OM25. 2.28.1.4.4.005 OTU 9 seqs prokMSA_id:004583 AF001636 clone OCS28. prokMSA_id:068994 AF268216 EBAC39D12 ; tRNA-Ile complete ; and 23S prokMSA_id:068993 AF268221 EBAC46D07 ; tRNA-Ile complete ; and 23S prokMSA_id:068991 AY033300 alpha MB11B10 ; tRNA-Ile complete ; and 23S prokMSA_id:068981 AY033313 alpha MB12C06 ; tRNA-Ile complete ; and 23S prokMSA_id:068980 AY033316 alpha MB12F11 ; tRNA-Ile complete ; and 23S prokMSA_id:068978 AY033319 alpha MB13G10 ; tRNA-Ile complete ; and 23S prokMSA_id:064978 AY095929 alpha SH-329 prokMSA_id:018817 U70681 planctomycete OM55 2.28.1.4.4.006 OTU 1 seq prokMSA_id:004579 Z29618 Azospirillum halopraeferens str. AU4 DSM 3675 . 2.28.1.4.4.007 OTU 3 seqs prokMSA_id:046623 AF422655 clone d064 prokMSA_id:079172 AY187896 clone I13 prokMSA_id:004575 D45202 str. HD-1. 2.28.1.4.4.008 OTU 1 seq prokMSA_id:004574 U70683 clone OM75. 2.28.1.4.4.009 OTU 2 seqs prokMSA_id:017396 AF353233 alpha clone Arctic96A-18 prokMSA_id:004573 U70679 clone OM38. 2.28.1.4.4.010 OTU 1 seq prokMSA_id:004572 AJ238567 Azospirillum doebereinerae str. 63f. 2.28.1.4.4.012 OTU 2 seqs prokMSA_id:004549 Z29623 Azospirillum sp. str. 4 AZ DSM 4834. prokMSA_id:004555 Z29637 Azospirillum sp. str. 5 AZ DSM 4835. 2.28.1.4.4.013 OTU 1 seq prokMSA_id:004554 X68470 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.28.1.4.4.014 OTU 1 seq prokMSA_id:004552 X79728 Azospirillum sp. str. 137/5. 2.28.1.4.4.015 OTU 1 seq prokMSA_id:004551 AF069496 Trojanella thessalonices str. L13. 2.28.1.4.4.016 OTU 1 seq prokMSA_id:004550 AF159661 clone HstpL36. 2.28.1.4.4.017 OTU 1 seq prokMSA_id:004548 AF013558 unnamed organism. 2.28.1.4.4.018 OTU 1 seq prokMSA_id:004547 Z29616 Azospirillum amazonense str. Y-1 DSM 2787 . 2.28.1.4.4.019 OTU 1 seq prokMSA_id:004546 X92464 Azospirillum sp. str. ASP-1. 2.28.1.4.4.020 OTU 1 seq prokMSA_id:004545 Z29583 Azospirillum irakense str. KBC1. 2.28.1.4.4.021 OTU 1 seq prokMSA_id:016640 Z88575 isolate HOS14 2.28.1.4.4.022 OTU 27 seqs prokMSA_id:049588 AB054135 alpha HOC1 prokMSA_id:021146 AB054138 alpha HOC4 prokMSA_id:022342 AB054140 alpha HOC6 prokMSA_id:031227 AB054141 alpha HOC7 prokMSA_id:024637 AB054142 alpha HOC8 prokMSA_id:051928 AB054143 alpha HOC9 prokMSA_id:034613 AB054144 alpha HOC10 prokMSA_id:049607 AB054145 alpha HOC11 prokMSA_id:036723 AB054147 alpha HOC13 prokMSA_id:043501 AB054148 alpha HOC14 prokMSA_id:042614 AB054149 alpha HOC15 prokMSA_id:040336 AB054150 alpha HOC16 prokMSA_id:026396 AB054151 alpha HOC17 prokMSA_id:040299 AB054152 alpha HOC18 prokMSA_id:041079 AB054153 alpha HOC19 prokMSA_id:036213 AB054154 alpha HOC20 prokMSA_id:034419 AB054157 alpha HOC23 prokMSA_id:023317 AB054158 alpha HOC24 prokMSA_id:026958 AB054160 alpha HOC26 prokMSA_id:045239 AB054164 alpha HOC30 prokMSA_id:024176 AB054166 alpha HOC32 prokMSA_id:045712 AB054169 alpha HOC35 prokMSA_id:020547 AB054176 alpha HOC42 prokMSA_id:016678 AB054177 alpha HOC43 prokMSA_id:022043 AB054178 alpha HOC44 prokMSA_id:036320 AB054179 alpha HOC45 prokMSA_id:017000 AB054182 alpha HOC48 2.28.1.4.4.023 OTU 2 seqs prokMSA_id:018546 AJ292594 WD231 clone WD231 prokMSA_id:030490 AJ292608 WD2103 clone WD2103 2.28.1.4.4.024 OTU 3 seqs prokMSA_id:060700 AF533506 alpha clone ASL45 prokMSA_id:060699 AF533507 alpha clone AW6 prokMSA_id:074301 AF533509 alpha clone ASL6 2.28.1.4.4.027 OTU 5 seqs prokMSA_id:023291 AF085496 Alpha strain 15158 prokMSA_id:055749 AY043373 Inquilinus limosus strain AU430 prokMSA_id:063608 AY043374 Inquilinus limosus strain AU476 prokMSA_id:063607 AY043375 Inquilinus limosus strain AU1979 prokMSA_id:092317 AY360342 Inquilinus limosus 2.28.1.4.4.028 OTU 1 seq prokMSA_id:024244 AF132137 Endosymbiont of Acanthamoeba sp. UWC9 2.28.1.4.4.029 OTU 2 seqs prokMSA_id:032446 AF186697 alpha MA2801 prokMSA_id:025178 AF186698 Alpha MA2802 2.28.1.4.4.030 OTU 2 seqs prokMSA_id:028753 AF188166 alpha KEppib19 prokMSA_id:069538 AY145562 Alpha AP-25 2.28.1.4.4.031 OTU 1 seq prokMSA_id:025464 AF150710 Elbe River snow isolate Iso40 2.28.1.4.4.032 OTU 2 seqs prokMSA_id:025641 AF234730 sludge A3 prokMSA_id:096049 AY424826 clone mv13.5 2.28.1.4.4.033 OTU 1 seq prokMSA_id:026518 U84622 marine 2.28.1.4.4.034 OTU 1 seq prokMSA_id:026566 AF293001 Green Bay ferromanganous micronodule MNC12 2.28.1.4.4.035 OTU 1 seq prokMSA_id:058862 AF426002 UNSW7 2.28.1.4.4.036 OTU 1 seq prokMSA_id:031003 AF422653 clone d047 2.28.1.4.4.038 OTU 1 seq prokMSA_id:031146 AF424220 delta MERTZ_2CM_256 2.28.1.4.4.039 OTU 1 seq prokMSA_id:032486 AJ292604 WD278 clone WD278 2.28.1.4.4.040 OTU 1 seq prokMSA_id:032545 Z88590 isolate HRV35 2.28.1.4.4.041 OTU 1 seq prokMSA_id:032646 AF424275 alpha MERTZ_2CM_147 2.28.1.4.4.042 OTU 1 seq prokMSA_id:032841 AF179678 Defluvicoccus vanus 2.28.1.4.4.043 OTU 1 seq prokMSA_id:033613 AF465655 alpha YNPRH85B 2.28.1.4.4.044 OTU 1 seq prokMSA_id:034409 AJ244796 Alpha SOGA19 2.28.1.4.4.045 OTU 1 seq prokMSA_id:036094 AF440705 alpha ARCT1-17 2.28.1.4.4.046 OTU 2 seqs prokMSA_id:058135 AF498696 Ellin314 prokMSA_id:058114 AF498710 Ellin328 2.28.1.4.4.047 OTU 1 seq prokMSA_id:055487 AF523951 clone FW51 2.28.1.4.4.048 OTU 1 seq prokMSA_id:041918 AB049109 Azospirillum sp. B52 2.28.1.4.4.049 OTU 2 seqs prokMSA_id:042010 AF411852 Azospirillum sp. 7C prokMSA_id:056305 AY118225 Azospirillum sp. DA10-2 2.28.1.4.4.050 OTU 3 seqs prokMSA_id:072555 AJ240913 alpha CHAB-III-8 5' prokMSA_id:043720 Z88580 isolate HRV2 prokMSA_id:042521 Z88584 isolate HRV7 2.28.1.4.4.051 OTU 1 seq prokMSA_id:056033 AF523879 clone RCP2-92 2.28.1.4.4.052 OTU 1 seq prokMSA_id:055703 AF467388 alpha clone 1559 2.28.1.4.4.053 OTU 1 seq prokMSA_id:045099 AJ318202 alpha clone BIxi22 2.28.1.4.4.054 OTU 2 seqs prokMSA_id:045257 AF391978 thermal soil clone YNPFFP57 prokMSA_id:045882 AF391979 thermal soil clone YNPFFP3 2.28.1.4.4.055 OTU 1 seq prokMSA_id:046601 AF145837 Metal-contaminated soil clone K20-40 2.28.1.4.4.057 OTU 1 seq prokMSA_id:050928 AF194377 alpha kpj324rc 2.28.1.4.4.058 OTU 1 seq prokMSA_id:050973 AF293000 Green Bay ferromanganous micronodule MNG3 2.28.1.4.4.059 OTU 1 seq prokMSA_id:052333 AF424272 alpha MERTZ_2CM_62 2.28.1.4.4.060 OTU 3 seqs prokMSA_id:056633 AY100603 clone cvf65019 prokMSA_id:060287 AY129799 Azospirillum sp. clone GCPF30 prokMSA_id:059903 AY133099 alpha clone ccspost211 2.28.1.4.4.061 OTU 3 seqs prokMSA_id:060467 AF533354 Roseomonas fauriae prokMSA_id:077160 AY150046 Roseomonas fauriae strain ATCC 49958 prokMSA_id:089832 AY324110 Azospirillum brasilense strain ATCC 29145 2.28.1.4.4.062 OTU 1 seq prokMSA_id:060574 AF407727 clone B79 2.28.1.4.4.063 OTU 1 seq prokMSA_id:062964 AF527585 clone LPB46 2.28.1.4.4.064 OTU 1 seq prokMSA_id:063269 AF523950 clone FW93 2.28.1.4.4.067 OTU 11 seqs prokMSA_id:021846 AB049110 Azospirillum sp. B506 prokMSA_id:042220 AB049111 Azospirillum sp. B510 prokMSA_id:072782 AB049112 Azospirillum sp. B518 prokMSA_id:060578 AF407723 clone B53 prokMSA_id:058733 AF521650 Azospirillum sp. Arm2-2 prokMSA_id:065239 AJ278445 Azospirillum sp. strain N4 prokMSA_id:063342 AY118222 Azospirillum sp. Mat2-1a prokMSA_id:063343 AY118223 Azospirillum sp. DA6-2-2 prokMSA_id:063341 AY118224 Azospirillum sp. DA2-3-1 prokMSA_id:082665 AY265874 Perchlorate-reducing SN1A prokMSA_id:004571 Z29619 Azospirillum lipoferum str. VPI Sp 59b NCIMB 11861 . 2.28.1.4.4.068 OTU 1 seq prokMSA_id:064591 AF467384 alpha clone 1552 2.28.1.4.4.069 OTU 1 seq prokMSA_id:064593 AF467383 alpha clone 1547 2.28.1.4.4.070 OTU 1 seq prokMSA_id:064616 AF467352 alpha clone 1656 2.28.1.4.4.071 OTU 1 seq prokMSA_id:065722 AF507662 soil clone C1115 2.28.1.4.4.072 OTU 1 seq prokMSA_id:066229 AF508113 Phaeospirillum fulvum isolate S3 2.28.1.4.4.073 OTU 1 seq prokMSA_id:066470 AY100622 clone cvf64074 2.28.1.4.4.074 OTU 1 seq prokMSA_id:066498 AY100589 clone cvf63051 2.28.1.4.4.075 OTU 1 seq prokMSA_id:066501 AY100586 clone cvf74040 2.28.1.4.4.076 OTU 1 seq prokMSA_id:066502 AY100585 clone cvf70133 2.28.1.4.4.077 OTU 1 seq prokMSA_id:066916 AJ306785 clone SHA-4 2.28.1.4.4.078 OTU 2 seqs prokMSA_id:068658 AJ439372 alpha GIg-4 isolate GIg-4 prokMSA_id:091229 AY345437 K2-12 2.28.1.4.4.079 OTU 1 seq prokMSA_id:070400 AF097820 clone 49525 2.28.1.4.4.080 OTU 1 seq prokMSA_id:071691 AJ347032 clone TK51 2.28.1.4.4.081 OTU 3 seqs prokMSA_id:076590 AJ518766 alpha clone JG37-AG-20 prokMSA_id:075429 AJ534613 alpha clone JG36-TzT-23 prokMSA_id:075684 AJ534620 alpha clone JG36-TzT-195 2.28.1.4.4.082 OTU 1 seq prokMSA_id:075481 AY154627 earthworm cast clone c277 2.28.1.4.4.083 OTU 2 seqs prokMSA_id:075660 AJ518772 alpha clone JG37-AG-79 prokMSA_id:075527 AJ518777 alpha clone JG37-AG-119 2.28.1.4.4.084 OTU 1 seq prokMSA_id:075805 AY154566 earthworm cast clone c202 2.28.1.4.4.085 OTU 1 seq prokMSA_id:075835 AY150050 Roseomonas genomospecies 6 strain ATCC 49961 2.28.1.4.4.086 OTU 1 seq prokMSA_id:075966 AY159146 MF_clone_118 2.28.1.4.4.087 OTU 1 seq prokMSA_id:076183 AJ534615 alpha clone JG36-TzT-105 2.28.1.4.4.088 OTU 1 seq prokMSA_id:076633 AJ519652 alpha clone GuBH2-AD-23 2.28.1.4.4.089 OTU 1 seq prokMSA_id:076700 AJ518764 alpha clone JG37-AG-11 2.28.1.4.4.090 OTU 1 seq prokMSA_id:077366 AF482444 clone R5p16 2.28.1.4.4.091 OTU 1 seq prokMSA_id:077697 AB089083 alpha clone:Rs-B07 2.28.1.4.4.092 OTU 1 seq prokMSA_id:077711 AB089087 alpha clone:Rs-H76 2.28.1.4.4.094 OTU 3 seqs prokMSA_id:069358 AF523824 Rhodocista pekingense prokMSA_id:077815 AJ401204 Rhodocista sp. AT2107 prokMSA_id:078339 AJ401217 Rhodocista sp. AR2107 2.28.1.4.4.095 OTU 1 seq prokMSA_id:078233 AB089089 alpha clone:Rs-D39 2.28.1.4.4.096 OTU 1 seq prokMSA_id:078262 AB089099 alpha clone:Rs-E51 2.28.1.4.4.097 OTU 1 seq prokMSA_id:078348 AB089088 alpha clone:Rs-D21 2.28.1.4.4.098 OTU 1 seq prokMSA_id:078724 AJ536857 alpha clone JG30-KF-C3 2.28.1.4.4.099 OTU 1 seq prokMSA_id:079336 AY187328 clone csbio160376 2.28.1.4.4.100 OTU 1 seq prokMSA_id:079574 AY187327 clone csbio160311 2.28.1.4.4.101 OTU 1 seq prokMSA_id:079953 AY220715 alpha clone WCPAP11 2.28.1.4.4.102 OTU 1 seq prokMSA_id:079959 AY192270 alpha clone P2-8F 2.28.1.4.4.103 OTU 1 seq prokMSA_id:081336 AB100498 alpha clone: Rs-070 2.28.1.4.4.104 OTU 1 seq prokMSA_id:083629 AY221078 clone CCU22 2.28.1.4.4.105 OTU 1 seq prokMSA_id:085531 AY242691 soil clone Tc120-H03 2.28.1.4.4.106 OTU 1 seq prokMSA_id:086321 AY214646 alpha clone SL2-1-C7 2.28.1.4.4.107 OTU 1 seq prokMSA_id:086765 AY283791 Azospirillum sp. LOD4 2.28.1.4.4.108 OTU 2 seqs prokMSA_id:088557 AY328705 DSSD6 prokMSA_id:090163 AY328840 Drinking water MB8 2.28.1.4.4.109 OTU 2 seqs prokMSA_id:089714 AY328553 HOClCi4 prokMSA_id:089662 AY328565 HOClCi16 2.28.1.4.4.110 OTU 1 seq prokMSA_id:090269 AY315231 rumen clone JRCH05 2.28.1.4.4.111 OTU 1 seq prokMSA_id:091532 AY135671 clone ANT18/2_18 2.28.1.4.4.112 OTU 1 seq prokMSA_id:091561 AY345402 K2-75 2.28.1.4.4.113 OTU 1 seq prokMSA_id:091903 AY345389 L12 2.28.1.4.4.114 OTU 1 seq prokMSA_id:093503 AJ581583 alpha clone KCM-B-24 2.28.1.4.4.115 OTU 1 seq prokMSA_id:093769 AJ581616 alpha clone KCM-C-45 2.28.1.4.4.116 OTU 1 seq prokMSA_id:093955 AY360520 clone BSBd8-20/40m 2.28.1.4.4.117 OTU 1 seq prokMSA_id:093985 AJ581614 alpha clone KCM-C-119 2.28.1.4.4.118 OTU 1 seq prokMSA_id:094055 AJ581585 alpha clone KCM-B-15 2.28.1.4.4.119 OTU 1 seq prokMSA_id:094063 AY360487 clone BSB1-115m 2.28.1.4.4.120 OTU 1 seq prokMSA_id:094484 AY373415 clone A6 complete 2.28.1.4.4.121 OTU 1 seq prokMSA_id:094511 AJ583166 alpha- clone S15B-MN2 2.28.1.4.4.122 OTU 1 seq prokMSA_id:096012 AY375070 clone B21 2.28.1.4.4.123 OTU 1 seq prokMSA_id:096386 AY375134 clone D101 2.28.1.4.4.124 OTU 1 seq prokMSA_id:096982 Y14147 Azospirillum amazonense isolate ISR07 2.28.1.4.4.125 OTU 1 seq prokMSA_id:097923 AY225603 alpha clone AT-s3-44 2.28.1.4.4.999 poor quality 207 seqs prokMSA_id:031788 AB027690 Azospirillum sp. B4 prokMSA_id:040859 AB041285 ECS15 prokMSA_id:031567 AB041291 ECS21 prokMSA_id:027827 AB047142 SW7 prokMSA_id:064038 AB087332 clone:F1 prokMSA_id:064008 AB087367 clone:F6 prokMSA_id:088370 AB111828 prokMSA_id:090279 AB111839 prokMSA_id:088621 AB111840 prokMSA_id:089309 AB111845 prokMSA_id:056436 AF010079 prokMSA_id:074463 AF059762 HdEPI4 prokMSA_id:073345 AF059763 HdEPI5 prokMSA_id:017788 AF078193 Grassland soil clone saf1_121 prokMSA_id:033907 AF078217 Grassland soil clone saf1_314 prokMSA_id:074528 AF078220 Grassland soil clone saf1_318 prokMSA_id:023449 AF093776 Band1#399 prokMSA_id:036442 AF107331 freshwater LCK-59 prokMSA_id:044439 AF126448 Azospirillum brasilense prokMSA_id:035725 AF128634 soil C0168 prokMSA_id:046135 AF128639 soil C067 prokMSA_id:074618 AF145845 Metal-contaminated soil clone K20-50 prokMSA_id:046989 AF173976 Alpha OM25 prokMSA_id:077454 AF188880 M6 prokMSA_id:077509 AF188881 M23 prokMSA_id:025385 AF234049 #0319-23O19 prokMSA_id:048433 AF280949 clone JS9 prokMSA_id:028606 AF280950 clone JS10 prokMSA_id:016426 AF280956 clone JS17 prokMSA_id:041879 AF280963 clone JS24 prokMSA_id:031807 AF280965 clone JS26 prokMSA_id:024496 AF289872 alpha Kmlps0-16 prokMSA_id:038598 AF289877 alpha Kmlps0-27 prokMSA_id:033042 AF289878 alpha Kmlps0-28 prokMSA_id:042040 AF289889 alpha Kmlps3-13 prokMSA_id:021248 AF289891 alpha Kmlps3-19 prokMSA_id:052693 AF301408 peat bog BP6 prokMSA_id:030262 AF301410 peat bog BP4 prokMSA_id:072775 AF301412 peat bog BS2 prokMSA_id:069775 AF301414 peat bog BS8 prokMSA_id:071866 AF301415 peat bog BP7 prokMSA_id:028710 AF315425 temperate forest soil C6A23 prokMSA_id:042090 AF332346 clone C26-25 prokMSA_id:039310 AF332350 clone C26-27 prokMSA_id:020127 AF337833 copper smeltery D65 prokMSA_id:068205 AF365520 clone BM89MF5BF1 prokMSA_id:068167 AF365566 clone BT49MF4BD7 prokMSA_id:067980 AF365786 clone BM89PA1BbD1 prokMSA_id:067959 AF365812 clone BT60PA10BA12 prokMSA_id:040436 AF369715 alpha clone 38 prokMSA_id:034733 AF392629 clone LAA2 prokMSA_id:074442 AF393478 Alpha sp. oral clone BF017 prokMSA_id:029918 AF423265 soil clone 449-2 prokMSA_id:053437 AF428883 clone CR98-35-01 prokMSA_id:076881 AF431065 alpha clone N11.143WL prokMSA_id:076103 AF431066 alpha clone N11.98WL prokMSA_id:076787 AF431071 alpha clone N12.26WL prokMSA_id:076187 AF431081 alpha clone C16.30WL prokMSA_id:077168 AF431082 alpha clone C16.45WL prokMSA_id:075741 AF431084 alpha clone C16.53WL prokMSA_id:075701 AF431091 alpha clone C17.22WL prokMSA_id:076470 AF431095 alpha clone C17.49WL prokMSA_id:075023 AF431096 alpha clone C17.53WL prokMSA_id:077210 AF431104 alpha clone S21.45WL prokMSA_id:076712 AF431118 alpha clone N26.103SM prokMSA_id:076098 AF431131 alpha clone N27.109SM prokMSA_id:077200 AF431145 alpha clone C31.27SM prokMSA_id:074924 AF431153 alpha clone C32.35SM prokMSA_id:076855 AF431164 alpha clone S37.29SM prokMSA_id:076617 AF431165 alpha clone S37.35SM prokMSA_id:076858 AF431174 alpha clone N42.17PG prokMSA_id:075232 AF431175 alpha clone N42.20PG prokMSA_id:076150 AF431177 alpha clone N42.26PG prokMSA_id:075097 AF431179 alpha clone N42.31PG prokMSA_id:074984 AF431184 alpha clone C46.04PG prokMSA_id:076352 AF431203 alpha clone S51.36PG prokMSA_id:077239 AF431211 alpha clone S52.48PG prokMSA_id:061242 AF432657 clone SMW4.123WL prokMSA_id:061208 AF432693 clone SMS9.47WL prokMSA_id:075760 AF432784 clone N11.21WL prokMSA_id:039456 AF434978 sponge symbiont JAWS23 prokMSA_id:036836 AF434985 sponge symbiont JAWS8 prokMSA_id:022624 AF440712 alpha ARCT1-34 prokMSA_id:027065 AF473948 A190-1 prokMSA_id:041836 AF473949 alpha A190-10 prokMSA_id:029407 AF473953 alpha A190-15 prokMSA_id:049746 AF473955 alpha A190-17 prokMSA_id:045932 AF473958 alpha A190-4 prokMSA_id:026905 AF473959 alpha A190-4 prokMSA_id:027051 AF473962 alpha A190-8 prokMSA_id:067102 AF499358 clone JCL9-72 prokMSA_id:067100 AF499359 clone JCL9-69 prokMSA_id:065617 AF507782 soil clone S1175 prokMSA_id:070853 AF530268 Azospirillum sp. S4-09 prokMSA_id:072450 AF544849 alpha clone D1C-16 prokMSA_id:058059 AF547412 alpha clone CL-S77-299 prokMSA_id:047174 AJ232797 clone TRE2 prokMSA_id:036214 AJ233494 clone WR1103 prokMSA_id:050812 AJ233496 clone WR1106 prokMSA_id:055827 AJ278446 Azospirillum sp. strain WB3 prokMSA_id:028894 AJ286737 Azospirillum sp. isolate DGGE band N prokMSA_id:022576 AJ292820 WR881 clone WR881 prokMSA_id:044384 AJ292830 WR8128 clone WR8128 prokMSA_id:038518 AJ297618 clone C44K19 prokMSA_id:036869 AJ308293 clone F99_05 prokMSA_id:070956 AJ319862 SB-82-CS prokMSA_id:060152 AJ347073 clone TK104 prokMSA_id:022055 AJ421120 clone C11-K14 prokMSA_id:043328 AJ421171 clone C8-K9 prokMSA_id:034869 AJ421195 clone C2-K9 prokMSA_id:017948 AJ421219 clone C5-K22 prokMSA_id:039866 AJ421906 clone Alt9-K80 prokMSA_id:036978 AJ421908 clone Alt9-K87 prokMSA_id:047322 AJ437441 clone 1_34_204 prokMSA_id:062550 AJ504577 isolate P2CN28 prokMSA_id:062527 AJ504605 isolate P2CN67 prokMSA_id:057314 AJ518125 clone Mul01-5 prokMSA_id:057144 AJ518388 clone Neu4P1-70 prokMSA_id:057127 AJ518407 clone Neu4P2-81 prokMSA_id:057056 AJ518491 clone Qui2P1-76 prokMSA_id:094632 AJ582237 alpha clone AC16 prokMSA_id:093397 AJ582592 clone M50-06 prokMSA_id:034669 AY037599 soil clone S072 prokMSA_id:023246 AY038393 planctomycete clone CD3D2 prokMSA_id:061585 AY043616 alpha clone NOW2.60WL prokMSA_id:061457 AY043773 alpha clone SMS9.32WL prokMSA_id:055313 AY044025 clone S9P.11WL prokMSA_id:061260 AY044037 clone N59P.13SM prokMSA_id:075689 AY061963 Azospirillum sp. NS01 prokMSA_id:065213 AY095541 alpha WR-4 prokMSA_id:065184 AY095577 alpha pV-5 prokMSA_id:065182 AY095580 alpha pV-8 prokMSA_id:065181 AY095581 alpha pV-10 prokMSA_id:065178 AY095583 alpha pV-13 prokMSA_id:065175 AY095585 alpha pV-15 prokMSA_id:065097 AY095717 alpha NL-4R prokMSA_id:065065 AY095755 alpha NL-5F prokMSA_id:064983 AY095920 alpha SH-313 prokMSA_id:077435 AY139005 alpha pBC16S3-43 prokMSA_id:077497 AY139006 alpha pBF16S24 prokMSA_id:072544 AY144208 alpha clone LTUA07014 prokMSA_id:073640 AY145587 alpha clone DC5-80-1 prokMSA_id:076649 AY150948 alpha clone uv87 prokMSA_id:075859 AY174191 Acidobacteriales clone WS022 prokMSA_id:077220 AY174211 Acidobacteriales clone WS059 prokMSA_id:079254 AY186838 alpha clone uv87 prokMSA_id:079273 AY187906 clone M9 prokMSA_id:082760 AY214708 alpha clone SL2-2-H12F prokMSA_id:084593 AY214730 alpha clone SL2-2-A1 prokMSA_id:082991 AY214764 alpha clone BB-1-E1 prokMSA_id:084525 AY242689 soil clone Tc130-22 prokMSA_id:085889 AY242690 soil clone Tc119-E01 prokMSA_id:085723 AY265865 Perchlorate-reducing AJ2 prokMSA_id:082706 AY265868 Perchlorate-reducing PMS1 prokMSA_id:082635 AY265869 Perchlorate-reducing SN1B prokMSA_id:086502 AY265870 Perchlorate-reducing SN2 prokMSA_id:088847 AY289410 soil clone DS-136 prokMSA_id:090068 AY289411 soil clone DS-30 prokMSA_id:088954 AY317119 Planctomycete SKA52 prokMSA_id:092014 AY345559 clone T7-1B02 prokMSA_id:091872 AY345566 clone T7-2-C01 prokMSA_id:091143 AY345571 clone T7-4B12 prokMSA_id:098038 AY391655 soil clone M39 prokMSA_id:096717 AY395086 alpha clone A02R prokMSA_id:004589 D12701 Rhodocista centenaria IAM 14193 . prokMSA_id:004560 D12702 Rhodocista sp. prokMSA_id:004559 D12703 Rhodocista sp. prokMSA_id:004578 M59061 Azospirillum lipoferum str. VPI Sp 59b ATCC 29707 . prokMSA_id:004557 NONE Azospirillum brasilense str. Sp 7 ATCC 29145 . prokMSA_id:004576 NONE Azospirillum irakense str. KA3. prokMSA_id:004556 NONE Azospirillum lipoferum str. BR17. prokMSA_id:004577 NONE Rhodocista centenaria. prokMSA_id:004558 U13158 clone PLY35. prokMSA_id:004582 U62833 clone RB10. prokMSA_id:029629 U85151 alpha clone ACK-DE34 prokMSA_id:004561 X79726 Azospirillum sp. str. 129/1. prokMSA_id:004563 X79727 Azospirillum sp. str. 129/2. prokMSA_id:069807 X79728 Azospirillum sp. 137.5 prokMSA_id:070555 X79729 A.lipoferum ATCC29708 prokMSA_id:004591 X79729 Azospirillum lipoferum str. VIP Sp RG 20a ATCC 29708. prokMSA_id:074084 X79730 A.lipoferum ATCC29731 prokMSA_id:004553 X79730 Azospirillum lipoferum str. VPI Sp RG6xx ATCC 29731. prokMSA_id:071819 X79731 A.halopraeferens Au4 prokMSA_id:004570 X79731 Azospirillum halopraeferens str. Au4. prokMSA_id:004590 X79732 Azospirillum brasilense str. Cdr. prokMSA_id:070421 X79732 A.brasilense Cdr prokMSA_id:004569 X79733 Azospirillum brasilense str. Sp 81 DSM 1859. prokMSA_id:004562 X79734 Azospirillum brasilense str. Sp T60 DSM 2298. prokMSA_id:070412 X79735 A.amazonense DSM 2787 prokMSA_id:004568 X79735 Azospirillum amazonense str. Y-1 DSM 2787 . prokMSA_id:070624 X79736 A.lipoferum F prokMSA_id:004567 X79736 Azospirillum lipoferum str. F. prokMSA_id:004564 X79737 Azospirillum irakense str. 103312. prokMSA_id:071616 X79737 A.irakense 103312 prokMSA_id:004543 X79738 Azospirillum lipoferum str. PA1. prokMSA_id:074325 X79738 A.lipoferum PA1 prokMSA_id:072050 X79739 A.brasilense Sp7 prokMSA_id:004592 X79739 Azospirillum brasilense str. Sp 7 DSM 1690 . prokMSA_id:004566 X79740 Azospirillum brasilense str. SpF94. prokMSA_id:071937 X79740 A.brasilense SpF94 prokMSA_id:072342 X79741 A.lipoferum W03 prokMSA_id:004544 X79741 Azospirillum lipoferum str. W03. prokMSA_id:004542 X79742 Azospirillum amazonense str. Y2. prokMSA_id:072426 X79742 A.amazonense Y2 prokMSA_id:004580 X90759 Azospirillum largomobile ACM 2041 . prokMSA_id:004565 X90760 Skermanella parooensis ACM 2042 . prokMSA_id:004581 Z29617 Azospirillum brasilense str. Sp 7 NCIMB 11860 . 2.28.1.5 OSP.PUSILLUM_GROUP 29 seqs 2.28.1.5.001 OTU 1 seq prokMSA_id:004596 AB015520 str. BD1-8. 2.28.1.5.002 OTU 1 seq prokMSA_id:004594 AB006768 Oceanospirillum pusillum IFO 13613 . 2.28.1.5.003 OTU 1 seq prokMSA_id:019713 U87512 marine 2.28.1.5.004 OTU 1 seq prokMSA_id:032879 AF424277 alpha MERTZ_2CM_305a 2.28.1.5.005 OTU 1 seq prokMSA_id:092749 AY354145 clone pIR3BF03 2.28.1.5.006 OTU 1 seq prokMSA_id:093850 AY360505 clone BSB2-364m 2.28.1.5.999 poor quality 23 seqs prokMSA_id:004595 AB000482 Oceanospirillum pusillum IFO 13613 . prokMSA_id:071552 AF022399 alpha 'Egg.clone D38' prokMSA_id:046440 AF022400 alpha 'Egg.clone D40' prokMSA_id:036227 AF034927 Colwellia sp. 'Egg clone D45' prokMSA_id:051457 AF034928 Alpha 'Egg clone D36' prokMSA_id:024323 AF034929 Alpha 'Egg clone D43' prokMSA_id:023041 AF296157 DMSP-degrading marine JA25 prokMSA_id:056593 AF365640 clone BM89DS1BbC11 prokMSA_id:068093 AF365646 clone BM89DS1BD10 prokMSA_id:064864 AF434061 alpha clone P1-2-1 prokMSA_id:064860 AF434063 alpha clone P1-1-20 prokMSA_id:064861 AF434064 alpha clone P1-1-29 prokMSA_id:064863 AF434065 alpha clone P1-1-5 prokMSA_id:064852 AF434073 alpha clone P2-1-4 prokMSA_id:064855 AF434074 alpha clone S4-1-19 prokMSA_id:064854 AF434075 alpha clone S4-1-5 prokMSA_id:018462 AF473960 alpha A190-6 prokMSA_id:069501 AF544846 alpha clone D1C-3 prokMSA_id:041483 AY038484 alpha clone CD4H4 prokMSA_id:088125 AY315265 rumen clone JRCI17 prokMSA_id:088860 AY323137 alpha clone A115-18 prokMSA_id:004597 L06455 str. MV1. prokMSA_id:004593 NONE Oceanospirillum pusillum ATCC 33338 . 2.28.1.6 RHIZOBIUM-AGROBACTERIUM_GROUP 4291 seqs 2.28.1.6.1 STA.STELLULATA_SUBGROUP 119 seqs 2.28.1.6.1.002 OTU 6 seqs prokMSA_id:004609 AB010864 str. HTB015. prokMSA_id:071947 AF359527 Marine ALUS253_25 prokMSA_id:060392 AF513445 Alpha LA51 prokMSA_id:004603 AJ000646 str. PTB-5. prokMSA_id:004598 D88525 Stappia stellulata IAM 12621 . prokMSA_id:004605 Y10913 unnamed organism -- macronuclear. 2.28.1.6.1.004 OTU 3 seqs prokMSA_id:004601 AB012864 str. MBIC3368. prokMSA_id:036381 AF218241 Alpha MBIC3368 prokMSA_id:027269 AF295099 Alpha NW001 2.28.1.6.1.005 OTU 1 seq prokMSA_id:018137 AH005032 marine 5' 2.28.1.6.1.006 OTU 7 seqs prokMSA_id:074042 AF227157 Achromobacter sp. LMG5411 prokMSA_id:026810 AF227158 Achromobacter sp. LMG5410 prokMSA_id:070672 AF227159 Achromobacter sp. LMG5431 prokMSA_id:072136 AF227160 Achromobacter sp. LMG5430 prokMSA_id:031969 AJ314748 alpha isolate C6/8 prokMSA_id:039707 AJ314749 alpha isolate C6/17 prokMSA_id:047270 AJ400704 Alpha C6-19 isolate C6-19 2.28.1.6.1.007 OTU 2 seqs prokMSA_id:035391 Y15338 Bartonella sp. isolate PRLIST01 prokMSA_id:031584 Y15347 Paracoccus sp. isolate PRLISY02 2.28.1.6.1.012 OTU 1 seq prokMSA_id:056844 AY149734 alpha SIMO CL-S30-58 2.28.1.6.1.013 OTU 1 seq prokMSA_id:060397 AF513441 Alpha LA33B 2.28.1.6.1.014 OTU 1 seq prokMSA_id:074769 AY145557 Alpha AP-20 2.28.1.6.1.015 OTU 1 seq prokMSA_id:076483 AY159148 MF_clone_123 2.28.1.6.1.018 OTU 19 seqs prokMSA_id:004600 AB012760 str. MBIC3366. prokMSA_id:004608 AB015896 str. MBIC3865. prokMSA_id:004610 AB023435 str. MBIC1535. prokMSA_id:004599 AB025419 str. MBIC3993. prokMSA_id:053790 AF194379 Alpha kbc11 prokMSA_id:042788 AF246615 Crassostrea virginica symbiont CV902-700 prokMSA_id:094391 AJ582083 Ahrensia sp. DFL-11 isolate DFL-11 prokMSA_id:070630 AY007682 Unknown marine alpha JP22.1 prokMSA_id:048225 AY038901 Marine SE09 prokMSA_id:048919 AY038916 Marine SE49 prokMSA_id:045402 AY038922 Marine SE83 prokMSA_id:082237 AY217769 Agrobacterium sp. SP25 prokMSA_id:088655 AY307927 Stappia sp. M8 prokMSA_id:088263 AY307928 Stappia sp. M4 prokMSA_id:091003 AY345441 K2-26 prokMSA_id:091870 AY345460 K66A prokMSA_id:004604 D88520 Agrobacterium stellulatum IAM 12614. prokMSA_id:004606 Y10914 unnamed organism -- macronuclear. prokMSA_id:004607 Y10915 unnamed organism -- macronuclear. 2.28.1.6.1.019 OTU 1 seq prokMSA_id:090998 AY345464 K56 2.28.1.6.1.020 OTU 1 seq prokMSA_id:091427 AY345422 K2-3 2.28.1.6.1.021 OTU 1 seq prokMSA_id:092008 AY345425 K2-29 2.28.1.6.1.999 poor quality 74 seqs prokMSA_id:020146 AB041281 ECS12 prokMSA_id:036167 AF022398 alpha 'Egg.clone D41' prokMSA_id:037169 AF034932 Alpha 'Egg clone D47' prokMSA_id:034067 AF231435 Humic substances enrichment clone A39 prokMSA_id:036467 AF231446 Humic substances enrichment clone E6 prokMSA_id:074289 AF260726 Alpha PTB1 prokMSA_id:076975 AF344293 alpha DGGE band GL2.6 prokMSA_id:075015 AF344297 alpha DGGE band GL2.4 prokMSA_id:076346 AF344298 alpha DGGE band GL2.14 prokMSA_id:068256 AF365462 clone gBM89MF1BD1 prokMSA_id:068094 AF365644 clone BM89DS1BB9 prokMSA_id:067915 AF365856 clone BT60PA10BG4 prokMSA_id:018286 AF367382 Agrobacterium sp. clone D055 prokMSA_id:018078 AF367394 Rhodobacter group clone D080 prokMSA_id:020604 AF414879 Alpha P498 prokMSA_id:042351 AF414880 Alpha P531 prokMSA_id:022835 AF414883 Alpha K786 prokMSA_id:033179 AF414884 Alpha HO88 prokMSA_id:046865 AF414885 Alpha L333 prokMSA_id:017686 AF414886 Alpha LO34 prokMSA_id:028349 AF414887 Alpha L348 prokMSA_id:076563 AF431103 alpha clone S21.44WL prokMSA_id:064851 AF434076 alpha clone M1-1-1 prokMSA_id:064850 AF434077 alpha clone M1-1-16 prokMSA_id:069642 AF434080 alpha clone M1-1-2 prokMSA_id:064847 AF434082 alpha clone M2-1-20 prokMSA_id:064846 AF434083 alpha clone M3-1-15 prokMSA_id:064842 AF434085 alpha clone P1-1-21 prokMSA_id:064841 AF434088 alpha clone S1-1-10 prokMSA_id:064838 AF434091 alpha clone S1-1-17 prokMSA_id:064837 AF434092 alpha clone S1-1-21 prokMSA_id:064835 AF434093 alpha clone S1-1-37 prokMSA_id:064836 AF434094 alpha clone S1-1-8 prokMSA_id:064833 AF434095 alpha clone S4-1-13 prokMSA_id:064834 AF434096 alpha clone S4-1-4 prokMSA_id:055994 AF434097 alpha clone S4-1-6 prokMSA_id:064832 AF434098 alpha clone S5-1-41 prokMSA_id:064831 AF434099 alpha clone S4-1-1 prokMSA_id:073917 AF434100 alpha clone S5-1-22 prokMSA_id:064829 AF434101 alpha clone S1-1-4 prokMSA_id:069626 AF466905 alpha isolate DGGE band D12 prokMSA_id:038876 AF473998 alpha LR-2 prokMSA_id:071475 AF498735 Ellin353 prokMSA_id:057871 AF546916 clone E5-46-BF1-160 prokMSA_id:047301 AH005025 marine 5' prokMSA_id:073092 AH005027 marine 5' prokMSA_id:004602 AJ000645 Moraxella sp. str. nr. 4. prokMSA_id:024731 AY038900 Marine SE03 prokMSA_id:049125 AY038903 Marine SE11 prokMSA_id:050676 AY038904 Marine SE114 prokMSA_id:018478 AY038907 Marine SE22 prokMSA_id:042184 AY038908 Marine SE26 prokMSA_id:051626 AY038909 Marine SE27 prokMSA_id:028539 AY038910 Marine SE32 prokMSA_id:037714 AY038911 Marine SE35 prokMSA_id:038726 AY038912 Marine SE36 prokMSA_id:041998 AY038914 Marine SE39 prokMSA_id:052422 AY038915 Marine SE44 prokMSA_id:045705 AY038917 Marine SE55 prokMSA_id:053427 AY038918 Marine SE57 prokMSA_id:025761 AY038919 Marine SE60 prokMSA_id:022141 AY038921 Marine SE65 prokMSA_id:052110 AY038925 Marine SE97 prokMSA_id:061562 AY043650 alpha clone NOS7.81WL prokMSA_id:085504 AY157972 Fe-oxidizing FO2 prokMSA_id:079282 AY180079 symbiont of Aplysina cavernicola isolate DGGE gel band 4 prokMSA_id:083044 AY239012 Marine HP39 prokMSA_id:024303 D85836 Roseibium hamelinense prokMSA_id:034588 U87481 marine prokMSA_id:026057 U87484 marine 3' prokMSA_id:072295 U87489 marine 3' prokMSA_id:070572 U87497 marine 3' prokMSA_id:049641 U87498 marine 3' prokMSA_id:046748 U87502 marine 3' 2.28.1.6.2 HYP.DENITRIFICANS_SUBGROUP 172 seqs 2.28.1.6.2.002 OTU 2 seqs prokMSA_id:050436 AF097812 clone 49518 prokMSA_id:004624 AF097824 clone 4953 2.28.1.6.2.003 OTU 5 seqs prokMSA_id:004618 X97690 Pedomicrobium ferrugineum ACM 3037 . prokMSA_id:004611 X97692 Pedomicrobium americanum ACM 3090 . prokMSA_id:004612 X97693 Pedomicrobium australicum IFAM ST-1306 . prokMSA_id:004614 X97694 Pedomicrobium australicum IFAM WD1355. prokMSA_id:004615 X97695 Pedomicrobium sp. ACM 3067. 2.28.1.6.2.004 OTU 1 seq prokMSA_id:004617 X97691 Pedomicrobium manganicum ACM 3038 . 2.28.1.6.2.005 OTU 1 seq prokMSA_id:004616 AB015245 str. JTB131. 2.28.1.6.2.006 OTU 1 seq prokMSA_id:004613 AF159659 clone HstpL31. 2.28.1.6.2.007 OTU 2 seqs prokMSA_id:059721 AF538931 Hyphomicrobium sulfonivorans WDL6 prokMSA_id:090031 AY305006 Hyphomicrobium sulfonivorans strain 25S complete 2.28.1.6.2.008 OTU 2 seqs prokMSA_id:048953 AF424280 alpha MERTZ_0CM_183 prokMSA_id:021263 AF424289 alpha MERTZ_21CM_88 2.28.1.6.2.009 OTU 1 seq prokMSA_id:064010 AB087364 clone:F9 2.28.1.6.2.010 OTU 1 seq prokMSA_id:023276 AF292998 Green Bay ferromanganous micronodule MNH2 2.28.1.6.2.013 OTU 18 seqs prokMSA_id:004626 AB016812 Hyphomicrobium methylovorum str. MBIC3196. prokMSA_id:004620 AF098790 Hyphomicrobium M3 str. M3 ATCC 202122. prokMSA_id:031209 AF148858 Hyphomicrobium sp. P2 prokMSA_id:045287 AF156711 Hyphomicrobium sp. HM prokMSA_id:025781 AF279788 Hyphomicrobium sp. S3 prokMSA_id:040973 AF279789 Hyphomicrobium sp. S4 prokMSA_id:035864 AF279790 Hyphomicrobium sp. SAC-1 prokMSA_id:048462 AF279791 Hyphomicrobium sp. SAN-1 prokMSA_id:027497 AF312221 Pietermaritzburg Y17-2 prokMSA_id:079050 AJ536858 alpha clone JG30-KF-C30 prokMSA_id:068656 AY081988 clone KRA30-08 prokMSA_id:066847 AY096167 clone F2-33 prokMSA_id:004627 Y14307 Hyphomicrobium methylovorum str. KM-146 DSM 5458 . prokMSA_id:004619 Y14308 Hyphomicrobium denitrificans str. X DSM 1869 . prokMSA_id:004622 Y14309 Hyphomicrobium facile subsp. facile IFAM H-526 . prokMSA_id:004625 Y14310 Hyphomicrobium facile subsp. ureaphilum IFAM CO-582 . prokMSA_id:004621 Y14311 Hyphomicrobium facile subsp. tolerans IFAM I-551 . prokMSA_id:004623 Y14312 Hyphomicrobium facilis IFAM B522. 2.28.1.6.2.014 OTU 1 seq prokMSA_id:028949 AF097806 clone 49512 2.28.1.6.2.015 OTU 1 seq prokMSA_id:033426 AF445669 alpha clone SM1C12 2.28.1.6.2.016 OTU 1 seq prokMSA_id:046020 AF236002 Alpha A0839 2.28.1.6.2.017 OTU 1 seq prokMSA_id:047454 AF198623 Hyphomicrobium sp. CM2 2.28.1.6.2.018 OTU 1 seq prokMSA_id:049373 AF424291 alpha MERTZ_21CM_114 2.28.1.6.2.019 OTU 1 seq prokMSA_id:056510 AY102318 clone a13111 2.28.1.6.2.020 OTU 1 seq prokMSA_id:060282 AY129805 Hyphomicrobium sp. clone GCPF37 2.28.1.6.2.021 OTU 1 seq prokMSA_id:061771 AJ416165 clone Sta0-29 2.28.1.6.2.022 OTU 1 seq prokMSA_id:074787 AF245639 alpha NAC11-14 2.28.1.6.2.023 OTU 1 seq prokMSA_id:076014 AY154543 earthworm intestine clone lw22 2.28.1.6.2.024 OTU 1 seq prokMSA_id:076857 AJ534614 alpha clone JG36-TzT-95 2.28.1.6.2.025 OTU 1 seq prokMSA_id:079465 AY187326 clone csbio160381 2.28.1.6.2.026 OTU 1 seq prokMSA_id:080482 AJ538047 clone CF4 2.28.1.6.2.027 OTU 1 seq prokMSA_id:080635 AB094879 clone:OHKB6.86 2.28.1.6.2.028 OTU 1 seq prokMSA_id:080777 AY187372 clone csbio160133 2.28.1.6.2.030 OTU 6 seqs prokMSA_id:026724 AF358017 clone LO13.3 prokMSA_id:076233 AY154507 earthworm intestine clone ew30 prokMSA_id:084103 AY221050 clone CCM16b prokMSA_id:085417 AY242681 soil clone Tc131-49 prokMSA_id:084828 AY242682 soil clone Tc135-223 prokMSA_id:084309 AY242683 soil clone Tc135-224 2.28.1.6.2.033 OTU 56 seqs prokMSA_id:089847 AY328567 HOClCi18 prokMSA_id:088141 AY328572 HOClCi23 prokMSA_id:090622 AY328586 HOClCi37 prokMSA_id:089336 AY328590 HOClCi41 prokMSA_id:090671 AY328624 DSSF1 prokMSA_id:089575 AY328625 DSSF2 prokMSA_id:090264 AY328626 DSSF3 prokMSA_id:090717 AY328629 DSSF6 prokMSA_id:088439 AY328632 DSSF9 prokMSA_id:090330 AY328633 DSSF10 prokMSA_id:088254 AY328634 DSSF11 prokMSA_id:089164 AY328635 DSSF12 prokMSA_id:088869 AY328636 DSSF13 prokMSA_id:089363 AY328638 DSSF15 prokMSA_id:090179 AY328642 DSSF19 prokMSA_id:089523 AY328643 DSSF20 prokMSA_id:088523 AY328647 DSSF24 prokMSA_id:089634 AY328648 DSSF25 prokMSA_id:090267 AY328650 DSSF27 prokMSA_id:088837 AY328651 DSSF29 prokMSA_id:089239 AY328652 DSSF30 prokMSA_id:089587 AY328654 DSSF32 prokMSA_id:088846 AY328655 DSSF33 prokMSA_id:089378 AY328656 DSSF34 prokMSA_id:090687 AY328657 DSSF35 prokMSA_id:088334 AY328658 DSSF36 prokMSA_id:089720 AY328659 DSSF37 prokMSA_id:089077 AY328660 DSSF38 prokMSA_id:088808 AY328661 DSSF39 prokMSA_id:090460 AY328662 DSSF40 prokMSA_id:090517 AY328663 DSSF41 prokMSA_id:089614 AY328664 DSSF42 prokMSA_id:088718 AY328665 DSSF43 prokMSA_id:089368 AY328666 DSSF44 prokMSA_id:088156 AY328667 DSSF45 prokMSA_id:088983 AY328668 DSSF46 prokMSA_id:090757 AY328669 DSSF47 prokMSA_id:090155 AY328670 DSSF48 prokMSA_id:090374 AY328671 DSSF49 prokMSA_id:088787 AY328672 DSSF50 prokMSA_id:090421 AY328674 DSSF52 prokMSA_id:090261 AY328676 DSSF54 prokMSA_id:089275 AY328680 DSSF58 prokMSA_id:088276 AY328683 DSSF61 prokMSA_id:090732 AY328684 DSSF62 prokMSA_id:090337 AY328686 DSSF64 prokMSA_id:089450 AY328687 DSSF65 prokMSA_id:089989 AY328689 DSSF67 prokMSA_id:090705 AY328690 DSSF68 prokMSA_id:088295 AY328693 DSSF71 prokMSA_id:090632 AY328695 DSSF73 prokMSA_id:088268 AY328696 DSSF74 prokMSA_id:088935 AY328697 DSSF75 prokMSA_id:088300 AY328698 DSSF76 prokMSA_id:089425 AY328699 DSSF77 prokMSA_id:089675 AY328700 DSSF78 2.28.1.6.2.034 OTU 2 seqs prokMSA_id:088368 AY328649 DSSF26 prokMSA_id:090015 AY328675 DSSF53 2.28.1.6.2.035 OTU 1 seq prokMSA_id:089740 AJ577315 clone 180 2.28.1.6.2.036 OTU 1 seq prokMSA_id:090121 AY191336 Hyphomicrobiaceae isolate ODP1176A1H_1_B 2.28.1.6.2.037 OTU 1 seq prokMSA_id:090693 AY191330 Hyphomicrobiaceae isolate ODP1176A1H3z_19_B 2.28.1.6.2.038 OTU 1 seq prokMSA_id:093317 AJ582034 alpha clone JG36-GS-70 2.28.1.6.2.039 OTU 1 seq prokMSA_id:094851 AY373409 clone A33 2.28.1.6.2.040 OTU 1 seq prokMSA_id:097044 AY186071 clone EA1B4 small subunit 2.28.1.6.2.999 poor quality 53 seqs prokMSA_id:048610 AB010601 clone ASB021 prokMSA_id:064060 AB087308 clone:CF3 prokMSA_id:064053 AB087316 clone:CF45 prokMSA_id:079910 AB089946 clone:HN22 prokMSA_id:045818 AF010001 prokMSA_id:034579 AF010073 prokMSA_id:025900 AF010104 prokMSA_id:021944 AF078389 Grassland soil clone sl2_705 prokMSA_id:037922 AF078447 Grassland soil clone sl3_818 prokMSA_id:017283 AF279786 Hyphomicrobium sp. MAR1 prokMSA_id:019200 AF289919 alpha Kmlps6-32 prokMSA_id:034552 AF357997 clone LO12.6 prokMSA_id:068257 AF365461 clone BM89MF1BC9 prokMSA_id:068051 AF365699 clone BT60DS1BD12 prokMSA_id:056482 AF365706 clone BT60DS1BE12 prokMSA_id:068043 AF365707 clone BT60DS1BE4 prokMSA_id:068015 AF365740 clone BT60DS4BC7 prokMSA_id:076481 AF431136 alpha clone N27.42SM prokMSA_id:076252 AF431173 alpha clone N42.02PG prokMSA_id:061237 AF432662 clone NOS7.105WL prokMSA_id:067663 AF485399 clone G12 prokMSA_id:070654 AF498745 Ellin363 prokMSA_id:067044 AF499426 clone BL-20 prokMSA_id:049781 AJ225380 Alpha species ; clone 25 prokMSA_id:048090 AJ387895 B4-53 clone B4-53 prokMSA_id:025649 AJ421107 clone C10-K36 486 prokMSA_id:058353 AJ489404 clone NS-X14 prokMSA_id:058340 AJ489425 clone NS-H20 prokMSA_id:072499 AJ504496 isolate P1CN27 prokMSA_id:062572 AJ504548 isolate P1CN94 prokMSA_id:062568 AJ504553 isolate P2CN02 prokMSA_id:062552 AJ504576 isolate P2CN27 prokMSA_id:062544 AJ504585 isolate P2CN36 prokMSA_id:098343 AJ510047 clone BH-13 prokMSA_id:097069 AJ510048 clone BH-14 prokMSA_id:057421 AJ517851 clone mHK35.5 prokMSA_id:061461 AY043770 alpha clone NMS8.93WL prokMSA_id:069738 AY143756 Pedomicrobium sp. clone Lur11 prokMSA_id:070574 AY144201 alpha clone LTUA03814 prokMSA_id:056828 AY149746 alpha SIMO CL-S30-73 prokMSA_id:084216 AY214784 alpha clone BB-1-B3 prokMSA_id:084852 AY242685 soil clone Tc128-96 prokMSA_id:086891 AY283087 alpha clone NS-17 prokMSA_id:087792 AY283091 alpha clone NS-49 prokMSA_id:087408 AY283094 alpha clone NS-67 prokMSA_id:088108 AY289416 soil clone DS-118 prokMSA_id:089893 AY289420 soil clone ABS-184 prokMSA_id:090224 AY289423 soil clone ABS-476 prokMSA_id:089808 AY328645 DSSF22 prokMSA_id:095302 AY395129 clone D02ST prokMSA_id:098293 AY395161 alpha clone F06ST prokMSA_id:004628 X84528 str. SBR1100. prokMSA_id:004629 X89322 clone 4911. 2.28.1.6.3 HYP.ZAVARZINII_SUBGROUP 66 seqs 2.28.1.6.3.001 OTU 13 seqs prokMSA_id:033083 AF234703 sludge A7b prokMSA_id:034544 AF234724 sludge A39 prokMSA_id:096422 AY424819 clone mv13.10 prokMSA_id:097510 AY424825 clone mv13.4 prokMSA_id:095446 AY424829 clone mv13.8 prokMSA_id:004641 U06473 str. US-353. prokMSA_id:004633 U59505 Hyphomicrobium W1-1B str. W1-1B. prokMSA_id:004634 U59506 Hyphomicrobium zavarzinii ATCC 27495. prokMSA_id:004636 Y14302 Hyphomicrobium vulgare str. MC-750 IFAM MC-750. prokMSA_id:004630 Y14303 Hyphomicrobium hollandicum IFAM KB-677 . prokMSA_id:004635 Y14304 Hyphomicrobium aestuarii DSM 1564. prokMSA_id:004632 Y14305 Hyphomicrobium zavarzinii IFAM ZV-622 . prokMSA_id:004637 Y14306 Hyphomicrobium zavarzinii str. ZV-580. 2.28.1.6.3.002 OTU 1 seq prokMSA_id:004640 AF097815 clone 49520 2.28.1.6.3.003 OTU 1 seq prokMSA_id:004639 AF097786 clone 1951 2.28.1.6.3.004 OTU 1 seq prokMSA_id:004638 Y14313 Pedomicrobium fusiforme DSM 5304. 2.28.1.6.3.005 OTU 1 seq prokMSA_id:056233 AF507005 Br-6 2.28.1.6.3.006 OTU 1 seq prokMSA_id:026693 AF279787 Hyphomicrobium sp. PMC 2.28.1.6.3.007 OTU 1 seq prokMSA_id:029178 AF235089 Hyphomicrobium sulfonivorans 2.28.1.6.3.008 OTU 1 seq prokMSA_id:069388 AY145566 Hyphomicrobiaceae AP-33 2.28.1.6.3.009 OTU 1 seq prokMSA_id:032066 AF424279 alpha MERTZ_0CM_99 2.28.1.6.3.010 OTU 1 seq prokMSA_id:034344 X53182 Hyphomicrobium vulgare part. 2.28.1.6.3.011 OTU 1 seq prokMSA_id:041463 AF097800 clone 1956 2.28.1.6.3.012 OTU 1 seq prokMSA_id:071234 AJ416167 clone Sta0-39 2.28.1.6.3.013 OTU 1 seq prokMSA_id:052450 AY037683 earthworm cast clone C028 2.28.1.6.3.014 OTU 1 seq prokMSA_id:052859 AF234719 sludge A27b 2.28.1.6.3.015 OTU 1 seq prokMSA_id:060291 AY129790 Azospirillum sp. clone GCPF16 2.28.1.6.3.016 OTU 1 seq prokMSA_id:060295 AY129788 Hyphomicrobium sp. clone GCPF12 2.28.1.6.3.017 OTU 1 seq prokMSA_id:075797 AY159186 RO_clone_2C 2.28.1.6.3.018 OTU 1 seq prokMSA_id:075991 AY159133 MF_clone_16 2.28.1.6.3.019 OTU 1 seq prokMSA_id:083124 AY242695 soil clone Tc130-31 2.28.1.6.3.020 OTU 4 seqs prokMSA_id:088630 AY328711 DSSD12 prokMSA_id:090551 AY328769 DSSD71 prokMSA_id:088552 AY328777 DSSD80 prokMSA_id:090585 AY328797 DSSD100 2.28.1.6.3.021 OTU 1 seq prokMSA_id:088670 AY328641 DSSF18 2.28.1.6.3.022 OTU 1 seq prokMSA_id:088743 AY191328 Hyphomicrobiaceae isolate ODP1176A1H3z_15_B 2.28.1.6.3.023 OTU 1 seq prokMSA_id:091332 AY345534 clone LWSR-73 2.28.1.6.3.024 OTU 1 seq prokMSA_id:094572 AJ583167 alpha- clone S15D-MN6 2.28.1.6.3.999 poor quality 27 seqs prokMSA_id:026634 AB007010 alpha prokMSA_id:036185 AF078328 Grassland soil clone sl1_022 prokMSA_id:049055 AF145862 Metal-contaminated soil clone K20-73 prokMSA_id:029180 AF287023 alpha EC-I16 prokMSA_id:022033 AF314452 PHOS-HE11 prokMSA_id:039357 AF357999 clone LO12.8 prokMSA_id:039722 AF358022 clone LO13.8 prokMSA_id:068061 AF365685 clone BT60DS1BB10 prokMSA_id:076732 AF431133 alpha clone N27.17SM prokMSA_id:067121 AF499331 clone JCL4-69 prokMSA_id:060692 AF534572 Hyphomicrobium zavarzinii prokMSA_id:025774 AJ232882 clone LRE28 prokMSA_id:055264 AJ518122 clone Mul01-40 prokMSA_id:057128 AJ518406 clone Neu4P2-57 prokMSA_id:057117 AJ518418 clone Neu4P3-19 prokMSA_id:057077 AJ518465 clone Neu4P3-87 prokMSA_id:057007 AJ518559 clone Qui4P1-87 prokMSA_id:025014 AY038703 clone TAF-A12 prokMSA_id:055825 AY043769 alpha clone NMS8.91WL prokMSA_id:066670 AY090121 Hyphomicrobium sp. clone IAFDn93 prokMSA_id:065556 AY095405 yard-trimming-compost clone S-34 prokMSA_id:055607 AY121823 clone ML-13 prokMSA_id:069254 AY144196 alpha clone LTUA02314 prokMSA_id:080206 AY192244 alpha clone W1-2E prokMSA_id:083478 AY221072 clone CCM9a prokMSA_id:088385 AY289422 soil clone DS-47 prokMSA_id:004631 NONE Hyphomicrobium vulgare str. MC-750 ATCC 27500. 2.28.1.6.4 STR.SBR2054_SUBGROUP 14 seqs 2.28.1.6.4.999 poor quality 14 seqs prokMSA_id:080912 AB089947 clone:HN33 prokMSA_id:079630 AB089952 clone:HN69 prokMSA_id:035697 AF010012 prokMSA_id:036007 AF078405 Grassland soil clone sl2_722 prokMSA_id:051594 AF141396 alpha clone CR-FL11 prokMSA_id:027761 AF388314 clone Ac86 prokMSA_id:022987 AJ244330 Riz1032 prokMSA_id:034291 AJ311405 maize rhizosphere c22_23 prokMSA_id:061682 AJ416265 clone Sta5-22 prokMSA_id:079333 AY186872 clone uvel25 prokMSA_id:089573 AY289406 soil clone DS-197 prokMSA_id:090715 AY289407 soil clone ABS-44 prokMSA_id:004642 X84526 str. SBR1098. prokMSA_id:004643 X84590 str. SBR2054. 2.28.1.6.5 STR.EE-12 1 seq 2.28.1.6.5.999 poor quality 1 seq prokMSA_id:004644 U58346 str. EE-12. 2.28.1.6.6 RM.VANNIELII_SUBGROUP 9 seqs 2.28.1.6.6.001 OTU 2 seqs prokMSA_id:050794 AF234709 sludge H46 prokMSA_id:051312 AF234739 sludge S43 2.28.1.6.6.002 OTU 1 seq prokMSA_id:068335 AF487436 Rhodomicrobium vannielii strain OK5M2 2.28.1.6.6.003 OTU 1 seq prokMSA_id:089155 AB100409 Alpha Shinshu-ah2 2.28.1.6.6.999 poor quality 5 seqs prokMSA_id:046378 AF145857 Metal-contaminated soil clone K20-65 prokMSA_id:027898 AJ233498 clone WR1116 prokMSA_id:080110 AY192267 alpha clone S3-4B prokMSA_id:004645 M34127 Rhodomicrobium vannielii str. EY33 ATCC 51194. prokMSA_id:004646 U68670 clone P43. 2.28.1.6.7 MPI.CAPSULATA 5 seqs 2.28.1.6.7.001 OTU 1 seq prokMSA_id:004647 AF004844 Methylopila capsulata str. IM1 VKM B-1606 . 2.28.1.6.7.999 poor quality 4 seqs prokMSA_id:070523 AF227126 Methylopila helvetica strain DM9 prokMSA_id:048105 AF227127 Methylopila helvetica strain DM6 prokMSA_id:072725 AF273213 Albobacter methylovorans prokMSA_id:026298 AF392626 clone CBC1 2.28.1.6.8 BL.VIRIDIS_ASSEMBLAGE 456 seqs 2.28.1.6.8.001 OTU 1 seq prokMSA_id:005402 AF097819 clone 49524 2.28.1.6.8.003 OTU 1 seq prokMSA_id:004722 AF004845 Methylorhabdus multivorans str. DM13 VKM B-2030 . 2.28.1.6.8.004 OTU 1 seq prokMSA_id:004721 Y12598 clone DA122. 2.28.1.6.8.007 OTU 2 seqs prokMSA_id:004716 U68615 clone M29. prokMSA_id:004717 U68680 clone P57. 2.28.1.6.8.008 OTU 3 seqs prokMSA_id:004715 AF007948 unnamed organism. prokMSA_id:036327 AF236000 Alpha F0723 prokMSA_id:035018 AF288301 Alpha 34619 2.28.1.6.8.009 OTU 1 seq prokMSA_id:004714 AF050531 clone WCHB1-55. 2.28.1.6.8.010 OTU 6 seqs prokMSA_id:063877 AB087718 Rhodopseudomonas cryptolactis complete prokMSA_id:004718 AF077729 Rhodoplanes Tok2tar1 str. Tok2tar1. prokMSA_id:004719 AF077730 Rhodoplanes Wai3R3 str. Wai3R3. prokMSA_id:068336 AF487437 Rhodoplanes elegans strain OK5R2b prokMSA_id:004713 D25311 Rhodoplanes elegans str. AS130. prokMSA_id:070971 D25311 Rhodoplanes elegans 2.28.1.6.8.011 OTU 1 seq prokMSA_id:004712 AF084510 Blastochloris viridis str. GI. 2.28.1.6.8.012 OTU 12 seqs prokMSA_id:039566 AB033757 Blastochloris sulfoviridis prokMSA_id:004688 AF084495 Blastochloris viridis DSM 133. prokMSA_id:004689 AF084496 Blastochloris viridis str. UN. prokMSA_id:004691 AF084498 Blastochloris viridis str. G3. prokMSA_id:004711 AJ012089 Blastochloris sulfoviridis str. ToP1. prokMSA_id:078031 AJ401203 Blastochloris sp. AT2101 prokMSA_id:063558 AY117148 Blastochloris sulfoviridis strain OK3G7 prokMSA_id:063559 AY117149 Blastochloris sulfoviridis strain Wai1bG3 prokMSA_id:063562 AY117150 Blastochloris sulfoviridis strain Wai3G1e prokMSA_id:004687 D25314 Blastochloris viridis ATCC 19567 . prokMSA_id:004664 D25314 Blastochloris viridis ATCC 19567 . prokMSA_id:004710 D86514 Blastochloris sulfoviridis DSM 729 . 2.28.1.6.8.013 OTU 1 seq prokMSA_id:004709 U70713 clone OM27. 2.28.1.6.8.014 OTU 1 seq prokMSA_id:004703 X77126 Azorhizobium caulinodans. 2.28.1.6.8.016 OTU 14 seqs prokMSA_id:062751 AF399969 Xanthobacter aminooxidans prokMSA_id:004672 AJ224614 str. TV6-2b. prokMSA_id:004701 AJ224615 str. Z2A-6A. prokMSA_id:004702 AJ224616 str. Z4A-2. prokMSA_id:022038 AJ313028 Xanthobacter sp. MN 45.1 isolate MN 45.1 prokMSA_id:004708 D11342 Azorhizobium caulinodans str. MAR 1568 ORS 571 . prokMSA_id:004730 X67221 Azorhizobium caulinodans str. MAR 1568 LMG 6465 . prokMSA_id:004671 X94199 Xanthobacter flavus str. 301. prokMSA_id:004704 X94200 Azorhizobium caulinodans str. MAR 1568 ORS 571 . prokMSA_id:004673 X94202 Xanthobacter flavus str. H4-14. prokMSA_id:004674 X94204 Xanthobacter flavus str. JW/KR-1. prokMSA_id:004675 X94205 Xanthobacter flavus str. JW/KR-2. prokMSA_id:004676 X94206 Xanthobacter flavus str. JW/KR-E1. prokMSA_id:004700 X99469 Xanthobacter tagetidis str. TagT2C. 2.28.1.6.8.019 OTU 9 seqs prokMSA_id:004690 AF084497 Blastochloris viridis str. G2. prokMSA_id:004692 AF084499 Blastochloris viridis str. G5. prokMSA_id:004666 AF084502 Blastochloris viridis str. G8. prokMSA_id:004667 AF084503 Blastochloris viridis str. G10. prokMSA_id:004694 AF084504 Blastochloris viridis str. G11. prokMSA_id:004695 AF084505 Blastochloris viridis str. G12. prokMSA_id:004668 AF084506 Blastochloris viridis str. B4. prokMSA_id:004696 AF084507 Blastochloris viridis str. B5. prokMSA_id:004697 AF084509 Blastochloris viridis str. B9. 2.28.1.6.8.020 OTU 2 seqs prokMSA_id:004693 AF084500 Blastochloris viridis str. G6. prokMSA_id:004669 AF084508 Blastochloris viridis str. B7. 2.28.1.6.8.021 OTU 1 seq prokMSA_id:004680 D25313 Rhodoplanes roseus str. 941. 2.28.1.6.8.022 OTU 1 seq prokMSA_id:004665 AF084501 Blastochloris viridis str. G7. 2.28.1.6.8.023 OTU 1 seq prokMSA_id:004663 X94198 Xanthobacter agilis str. SA35. 2.28.1.6.8.024 OTU 3 seqs prokMSA_id:038794 AF345551 Rhizobium sp. SDW045 prokMSA_id:079071 AY177367 Thiobacillus sp. 104 prokMSA_id:004661 D32247 Thiobacillus novellus IAM 12100. 2.28.1.6.8.025 OTU 9 seqs prokMSA_id:026549 AB074716 Alpha S-C1-18B2 prokMSA_id:024033 AB074717 Alpha S-C2-18A prokMSA_id:062748 AF399970 Xanthobacter viscosus prokMSA_id:077859 AJ514445 clone AS1o6 prokMSA_id:078044 AJ514456 Xanthobacter sp. AS2 clone AS2 prokMSA_id:004655 U62887 Xanthobacter autotrophicus str. T101. prokMSA_id:004656 U62888 Xanthobacter autotrophicus str. T102. prokMSA_id:004654 X94201 Xanthobacter autotrophicus str. 7c . prokMSA_id:004658 X94203 Xanthobacter autotrophicus str. JW33. 2.28.1.6.8.026 OTU 7 seqs prokMSA_id:004651 AJ224611 str. TA1-AE1. prokMSA_id:004652 AJ224612 str. TA12-21. prokMSA_id:004653 AJ224613 str. TA1-A1. prokMSA_id:017276 AY056830 Ancylobacter sp. AS1.1761 prokMSA_id:082106 AY211514 Ancylobacter sp. DSM 1107 prokMSA_id:081868 AY211515 Ancylobacter sp. DSM 1277 prokMSA_id:081693 AY211516 Ancylobacter sp. DSM 2457 2.28.1.6.8.027 OTU 1 seq prokMSA_id:004648 X68474 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.28.1.6.8.028 OTU 1 seq prokMSA_id:017471 AF097791 clone 19514 2.28.1.6.8.029 OTU 1 seq prokMSA_id:017542 AF469374 clone CTD38B 2.28.1.6.8.030 OTU 2 seqs prokMSA_id:020091 AY039817 Kaistia adipata complete prokMSA_id:064286 AY040361 Alpha LMG 20591 2.28.1.6.8.031 OTU 3 seqs prokMSA_id:020213 AF337888 gold mine D35 prokMSA_id:038212 AJ252699 Rhizosphere soil clone RSC-II-84 prokMSA_id:034126 AJ252701 Rhizosphere soil clone RSC-II-90 2.28.1.6.8.032 OTU 2 seqs prokMSA_id:020255 AF391130 Azorhizobium sp. Br5401 prokMSA_id:090480 AY301011 Azorhizobium sp. F1 2.28.1.6.8.033 OTU 1 seq prokMSA_id:020272 AF145870 Metal-contaminated soil clone K20-82 2.28.1.6.8.034 OTU 1 seq prokMSA_id:020976 AF407198 clone GIF7 2.28.1.6.8.036 OTU 2 seqs prokMSA_id:055851 AF502220 clone HP1B78 prokMSA_id:059329 AF502239 clone HP1U21 2.28.1.6.8.039 OTU 1 seq prokMSA_id:029743 AF145805 Metal-contaminated soil clone K20-01 2.28.1.6.8.042 OTU 1 seq prokMSA_id:032098 AF445138 clone Tc78 2.28.1.6.8.043 OTU 1 seq prokMSA_id:032314 AJ294349 Chelatococcus asaccharovorans strain TE2 2.28.1.6.8.044 OTU 1 seq prokMSA_id:034088 AJ295558 rape rhizosphere wr0197 2.28.1.6.8.045 OTU 1 seq prokMSA_id:035506 AJ296547 GR-296.II.111 clone GR-296.II.111 2.28.1.6.8.046 OTU 1 seq prokMSA_id:036908 AF345860 Rhizobiaceae str. M100 2.28.1.6.8.047 OTU 1 seq prokMSA_id:039556 AJ296548 GR-WP33-3 clone GR-WP33-3 2.28.1.6.8.049 OTU 2 seqs prokMSA_id:048489 AF445102 clone Tc35 prokMSA_id:040238 AF445108 clone Tc42 2.28.1.6.8.051 OTU 3 seqs prokMSA_id:058107 AF498717 Ellin335 prokMSA_id:058086 AF498744 Ellin362 prokMSA_id:080767 AY192248 alpha clone W3-3D 2.28.1.6.8.052 OTU 1 seq prokMSA_id:043219 AF288311 Alpha 76712 2.28.1.6.8.053 OTU 1 seq prokMSA_id:044246 AF234692 sludge H29 2.28.1.6.8.054 OTU 1 seq prokMSA_id:044875 AJ252676 Rhizosphere soil clone RSC-II-17 2.28.1.6.8.057 OTU 1 seq prokMSA_id:047562 AJ252698 Rhizosphere soil clone RSC-II-82 2.28.1.6.8.058 OTU 1 seq prokMSA_id:048622 U58013 MHP14 2.28.1.6.8.059 OTU 1 seq prokMSA_id:049637 AF235999 Alpha A0838 2.28.1.6.8.060 OTU 1 seq prokMSA_id:052053 AF292996 Green Bay ferromanganous micronodule MNF4 2.28.1.6.8.061 OTU 1 seq prokMSA_id:053533 AB062817 clone:BCf3-20 2.28.1.6.8.062 OTU 1 seq prokMSA_id:055386 AF507787 soil clone S1219 2.28.1.6.8.063 OTU 1 seq prokMSA_id:054630 AF292997 Green Bay ferromanganous micronodule MNG7 2.28.1.6.8.064 OTU 1 seq prokMSA_id:060583 AF407716 clone B15 2.28.1.6.8.065 OTU 1 seq prokMSA_id:060648 AF406523 alpha clone AEGEAN_112 2.28.1.6.8.066 OTU 3 seqs prokMSA_id:060723 AF532187 Monochloroacetic-acid-degrading MCAA1 prokMSA_id:068682 AJ306541 Xanthobacter sp. INA43/2-2 strain INA43/2-2 prokMSA_id:090457 AY307925 Xanthobacter sp. COX 2.28.1.6.8.067 OTU 1 seq prokMSA_id:063270 AF523949 clone FW91 2.28.1.6.8.068 OTU 1 seq prokMSA_id:063274 AF523948 clone FW138 2.28.1.6.8.070 OTU 3 seqs prokMSA_id:063277 AF523945 clone FW96 prokMSA_id:021706 AJ295650 KF-JG30-B3 prokMSA_id:077088 AJ518771 alpha clone JG37-AG-65 2.28.1.6.8.071 OTU 1 seq prokMSA_id:063338 AF523872 clone RCP1-19 2.28.1.6.8.072 OTU 1 seq prokMSA_id:063879 AB087717 Rhodoplanes sp. HA17 complete 2.28.1.6.8.073 OTU 1 seq prokMSA_id:064597 AF467376 alpha clone 1557 2.28.1.6.8.074 OTU 1 seq prokMSA_id:064872 AJ412676 clone 92 2.28.1.6.8.075 OTU 3 seqs prokMSA_id:065434 AF513085 clone 10A prokMSA_id:065424 AF513098 clone 6 prokMSA_id:065414 AF513106 clone 7A 2.28.1.6.8.076 OTU 1 seq prokMSA_id:065463 AY102322 clone a13115 2.28.1.6.8.077 OTU 1 seq prokMSA_id:065552 AY095409 yard-trimming-compost clone S-40 2.28.1.6.8.078 OTU 1 seq prokMSA_id:065876 AF507451 soil clone C098 2.28.1.6.8.079 OTU 1 seq prokMSA_id:066234 AF508112 Bosea thiooxidans isolate TJ1 2.28.1.6.8.080 OTU 1 seq prokMSA_id:066317 AF507004 Br-40 2.28.1.6.8.081 OTU 1 seq prokMSA_id:070100 AY145551 Alpha AP-12 2.28.1.6.8.082 OTU 1 seq prokMSA_id:071647 AY145553 Alpha AP-16 2.28.1.6.8.083 OTU 1 seq prokMSA_id:074124 AB081581 Rhizobiales str. A48 2.28.1.6.8.084 OTU 1 seq prokMSA_id:074895 AY159207 RO_isolate_11 2.28.1.6.8.085 OTU 1 seq prokMSA_id:074901 AJ518770 alpha clone JG37-AG-53 2.28.1.6.8.086 OTU 1 seq prokMSA_id:074920 AY154637 earthworm cast clone c292 2.28.1.6.8.087 OTU 1 seq prokMSA_id:074952 AJ534617 alpha clone JG36-TzT-166 2.28.1.6.8.088 OTU 2 seqs prokMSA_id:074970 AJ518778 alpha clone JG37-AG-123 prokMSA_id:076265 AJ534619 alpha clone JG36-TzT-193 2.28.1.6.8.090 OTU 3 seqs prokMSA_id:076050 AJ519651 alpha clone GuBH2-AD-10 prokMSA_id:075443 AJ532709 alpha clone JG34-KF-416 prokMSA_id:085551 AY221059 clone CCM24a 2.28.1.6.8.091 OTU 2 seqs prokMSA_id:075604 AY154592 earthworm cast clone c236 prokMSA_id:075445 AY154641 earthworm cast clone c302 2.28.1.6.8.092 OTU 1 seq prokMSA_id:075694 AY159139 MF_clone_39 2.28.1.6.8.093 OTU 2 seqs prokMSA_id:075897 AJ532707 alpha clone JG34-KF-361 prokMSA_id:093261 AJ581615 alpha clone KCM-C-79 2.28.1.6.8.094 OTU 1 seq prokMSA_id:075957 AY154575 earthworm cast clone c216 2.28.1.6.8.095 OTU 1 seq prokMSA_id:076270 AJ518768 alpha clone JG37-AG-26 2.28.1.6.8.096 OTU 1 seq prokMSA_id:076546 AJ518779 alpha clone JG37-AG-130 2.28.1.6.8.097 OTU 1 seq prokMSA_id:076573 AJ534618 alpha clone JG36-TzT-182 2.28.1.6.8.098 OTU 1 seq prokMSA_id:077232 AY159178 RO_clone_4C 2.28.1.6.8.099 OTU 1 seq prokMSA_id:077242 AJ518767 alpha clone JG37-AG-25 2.28.1.6.8.100 OTU 1 seq prokMSA_id:077273 AY159183 RO_clone_18C 2.28.1.6.8.101 OTU 1 seq prokMSA_id:078011 AJ514455 Xanthobacter sp. AS1 clone AS1 2.28.1.6.8.103 OTU 19 seqs prokMSA_id:026662 AF145868 Metal-contaminated soil clone K20-80 prokMSA_id:042429 AF445104 clone Tc38 prokMSA_id:048161 AF445116 clone Tc52 prokMSA_id:046714 AF445132 clone Tc72 prokMSA_id:041548 AF445149 clone Tc91 prokMSA_id:036311 AF445156 clone Tc99 prokMSA_id:027605 AJ007647 clone 4404-8 prokMSA_id:074986 AJ518761 alpha clone JG37-AG-1 prokMSA_id:075138 AJ532703 alpha clone JG34-KF-211 prokMSA_id:078599 AJ536856 alpha clone JG30-KF-B5 prokMSA_id:078474 AJ536869 alpha clone JG30a-KF-131 prokMSA_id:093584 AJ582029 alpha clone JG36-GS-46 prokMSA_id:031892 AY037712 earthworm cast clone C062 prokMSA_id:085348 AY242673 soil clone Tc129-17 prokMSA_id:085600 AY242674 soil clone Tc121-H05 prokMSA_id:082953 AY242675 soil clone Tc121-F05 prokMSA_id:082779 AY242676 soil clone TcA32 prokMSA_id:085321 AY242677 soil clone Tc132-57 prokMSA_id:085332 AY242678 soil clone Tc132-50 2.28.1.6.8.104 OTU 1 seq prokMSA_id:079012 AJ536855 alpha clone JG30-KF-A15 2.28.1.6.8.105 OTU 1 seq prokMSA_id:079109 AY187365 clone csbio160171 2.28.1.6.8.106 OTU 1 seq prokMSA_id:079124 AY187322 clone csbio160325 2.28.1.6.8.107 OTU 1 seq prokMSA_id:079246 AY187371 clone csbio160192 2.28.1.6.8.108 OTU 1 seq prokMSA_id:079526 AY187323 clone csbio160326 2.28.1.6.8.109 OTU 1 seq prokMSA_id:079708 AY187324 clone csbio160357 2.28.1.6.8.110 OTU 1 seq prokMSA_id:080058 AY192253 alpha clone P2-2H 2.28.1.6.8.111 OTU 1 seq prokMSA_id:082197 AY078053 Corbulabacter subterraneus 2.28.1.6.8.112 OTU 2 seqs prokMSA_id:086599 AY242679 soil clone Tc133-97 prokMSA_id:082826 AY242680 soil clone Tc128-73 2.28.1.6.8.113 OTU 1 seq prokMSA_id:083531 AY221076 clone CCU18 2.28.1.6.8.114 OTU 1 seq prokMSA_id:085162 AY254688 alpha SBR6alpha7 2.28.1.6.8.115 OTU 1 seq prokMSA_id:086452 AB106864 Xanthobacter sp. 127W 2.28.1.6.8.116 OTU 1 seq prokMSA_id:087368 AY278879 Bosea sp. T2-12 2.28.1.6.8.117 OTU 1 seq prokMSA_id:087741 AB110414 Blastochloris sulfoviridis complete 2.28.1.6.8.118 OTU 1 seq prokMSA_id:087835 AY268243 clone B9 small subunit 2.28.1.6.8.119 OTU 1 seq prokMSA_id:091124 AY345540 clone LWSR-28 2.28.1.6.8.120 OTU 1 seq prokMSA_id:093164 AY367014 Xanthobacter agilis 2.28.1.6.8.121 OTU 1 seq prokMSA_id:093792 AJ581617 alpha clone KCM-C-24 2.28.1.6.8.122 OTU 1 seq prokMSA_id:093795 AJ581586 alpha clone KCM-B-108 2.28.1.6.8.123 OTU 1 seq prokMSA_id:097561 AB121772 Alpha Shinshu-th1 2.28.1.6.8.999 poor quality 256 seqs prokMSA_id:033750 AB047120 OCG9 prokMSA_id:051206 AB047131 ONG4 prokMSA_id:044863 AB064690 clone:NK213 prokMSA_id:030223 AB064693 clone:NK217 prokMSA_id:076548 AB075091 clone:KSS3 prokMSA_id:075248 AB075168 clone:TSS5 prokMSA_id:074891 AB075170 clone:TSS7 prokMSA_id:064067 AB087297 clone:CF19 prokMSA_id:088366 AB111833 prokMSA_id:023827 AF010068 prokMSA_id:004657 AF059756 clone DgEPI1. prokMSA_id:023173 AF078205 Grassland soil clone saf1_209 prokMSA_id:048013 AF078216 Grassland soil clone saf1_313 prokMSA_id:018700 AF078234 Grassland soil clone saf2_119 prokMSA_id:029879 AF078246 Grassland soil clone saf2_213 prokMSA_id:022660 AF078294 Grassland soil clone saf3_105 prokMSA_id:036576 AF078305 Grassland soil clone saf3_117 prokMSA_id:047423 AF078336 Grassland soil clone sl1_109 prokMSA_id:020248 AF078363 Grassland soil clone sl2_502 prokMSA_id:051282 AF078367 Grassland soil clone sl2_506 prokMSA_id:036513 AF078372 Grassland soil clone sl2_512 prokMSA_id:025964 AF078375 Grassland soil clone sl2_515 prokMSA_id:050114 AF078392 Grassland soil clone sl2_708 prokMSA_id:051891 AF078403 Grassland soil clone sl2_720 prokMSA_id:035601 AF078439 Grassland soil clone sl3_808 prokMSA_id:049572 AF078441 Grassland soil clone sl3_810 prokMSA_id:034468 AF078446 Grassland soil clone sl3_816 prokMSA_id:036406 AF111786 ms2 prokMSA_id:034874 AF111787 ms6 prokMSA_id:034279 AF111788 ms10 prokMSA_id:035934 AF111789 ms14 prokMSA_id:038723 AF145852 Metal-contaminated soil clone K20-58 prokMSA_id:024068 AF145853 Metal-contaminated soil clone K20-60 prokMSA_id:004681 AF165267 unnamed organism. prokMSA_id:041418 AF170793 alpha QSSC9L-15 prokMSA_id:025158 AF179608 alpha clone RRII6 prokMSA_id:072030 AF200733 MRUNI2 prokMSA_id:042686 AF226198 maize root Zmrc109 prokMSA_id:038864 AF226233 maize root Zmrc21 prokMSA_id:036422 AF234103 #0319-7P3 prokMSA_id:034551 AF234145 #0319-7G10 prokMSA_id:019018 AF234153 #0319-7H5 prokMSA_id:050598 AF240149 TSA-5.3 prokMSA_id:025948 AF256045 alpha GT38-1b prokMSA_id:029255 AF256051 alpha GT38-2b prokMSA_id:072808 AF277740 MB9a-RC3 prokMSA_id:033216 AF283225 alpha MB9a-MO3 prokMSA_id:044368 AF289895 alpha Kmlps3-26 prokMSA_id:021004 AF316785 Crater Lake CL500-26 prokMSA_id:047046 AF337826 copper smeltery D87 prokMSA_id:068191 AF365535 clone BM89MF5BH8 prokMSA_id:068189 AF365541 clone BT49MF4BH3 prokMSA_id:068183 AF365546 clone BT49MF4BA5 prokMSA_id:068048 AF365701 clone BT60DS1BD3 prokMSA_id:068036 AF365713 clone BT60DS1BG2 prokMSA_id:068010 AF365745 clone BT60DS4BD8 prokMSA_id:067997 AF365763 clone BT60DS4BG11 prokMSA_id:067989 AF365773 clone BT60DS4BH6 prokMSA_id:067930 AF365844 clone BT60PA10BE6 prokMSA_id:028289 AF379037 clone EV8 prokMSA_id:018709 AF379689 clone SL14 prokMSA_id:028112 AF388315 clone Ac48 prokMSA_id:038698 AF392621 clone TCE10 prokMSA_id:039429 AF392632 clone LED12 prokMSA_id:017833 AF428713 clone CRP99-59 prokMSA_id:046482 AF428737 clone CR98-5-07 prokMSA_id:028377 AF428855 clone CR98-24-49 prokMSA_id:075803 AF431072 alpha clone N12.33WL prokMSA_id:076306 AF431074 alpha clone N12.50WL prokMSA_id:076749 AF431076 alpha clone C16.01WL prokMSA_id:076343 AF431086 alpha clone C17.06WL prokMSA_id:076223 AF431087 alpha clone C17.07WL prokMSA_id:076049 AF431089 alpha clone C17.10WL prokMSA_id:076412 AF431120 alpha clone N26.124SM prokMSA_id:077043 AF431123 alpha clone N26.130SM prokMSA_id:075206 AF431124 alpha clone N26.134SM prokMSA_id:076625 AF431135 alpha clone N27.35SM prokMSA_id:076363 AF431137 alpha clone N27.48SM prokMSA_id:076744 AF431142 alpha clone C31.13SM prokMSA_id:074910 AF431149 alpha clone C32.12SM prokMSA_id:075049 AF431156 alpha clone C32.55SM prokMSA_id:075918 AF431159 alpha clone S36.22SM prokMSA_id:075256 AF431178 alpha clone N42.29PG prokMSA_id:076811 AF431181 alpha clone N42.48PG prokMSA_id:075728 AF431191 alpha clone C47.12PG prokMSA_id:076375 AF431212 alpha clone S52.56PG prokMSA_id:089133 AF432630 clone N11.09WL prokMSA_id:077047 AF432818 clone C34.53SM prokMSA_id:075190 AF432833 clone C49.59PG prokMSA_id:023807 AF434950 sponge symbiont RSWS21 prokMSA_id:032936 AF434956 sponge symbiont RSWS29 prokMSA_id:050910 AF446311 alpha FL13A11 prokMSA_id:024879 AF446313 alpha FL14H05 prokMSA_id:064623 AF467341 actinomycete clone 1585 prokMSA_id:046913 AF469371 clone 33-PA66B99 prokMSA_id:060504 AF488637 Alpha Z2 prokMSA_id:067243 AF495445 clone F13.7 prokMSA_id:067241 AF495447 clone T01 prokMSA_id:058123 AF498699 Ellin317 prokMSA_id:066314 AF507003 Br-z25 prokMSA_id:065774 AF507600 soil clone C169 prokMSA_id:072454 AF523318 clone P4-64 prokMSA_id:070484 AF530287 Xanthobacter sp. S4-25 prokMSA_id:069795 AF544914 alpha clone 1-6-6 prokMSA_id:069222 AF544965 clone 2-7-10 prokMSA_id:057867 AF546920 clone E5-46-BF1-164 prokMSA_id:037076 AJ225361 Alpha species ; clone 59 prokMSA_id:020119 AJ232816 clone LBS13 prokMSA_id:036484 AJ232817 clone LBS14 prokMSA_id:032268 AJ233467 clone WR101 prokMSA_id:024126 AJ286736 isolate DGGE bands M & m prokMSA_id:032347 AJ289105 Rhodoplanes roseus strain DSM 13 233 prokMSA_id:072861 AJ290010 FukuS187 prokMSA_id:073633 AJ297614 clone C44K9 prokMSA_id:072146 AJ298361 marine BY-75 prokMSA_id:047695 AJ298362 marine AY-59 prokMSA_id:073267 AJ300126 alpha GE21 isolate GE21 prokMSA_id:045865 AJ309969 dtb81 prokMSA_id:019051 AJ309988 alpha strain dtb231 prokMSA_id:024861 AJ311404 maize rhizosphere c19_23 prokMSA_id:070129 AJ319839 SB-56-TW prokMSA_id:052367 AJ419640 clone R17 prokMSA_id:027465 AJ421187 clone C1-K20 prokMSA_id:019223 AJ437419 clone 1_34_124 prokMSA_id:019624 AJ437439 clone 1_34_315 prokMSA_id:074179 AJ437448 clone 1_32_221 prokMSA_id:044865 AJ437450 clone 1_32_306 prokMSA_id:074080 AJ437459 clone 1_32_322 prokMSA_id:040799 AJ437460 clone 1_32_323 prokMSA_id:062616 AJ504501 isolate P1CN34 prokMSA_id:062601 AJ504517 isolate P1CN56 prokMSA_id:056029 AJ504565 isolate P2CN16 prokMSA_id:062554 AJ504574 isolate P2CN25 prokMSA_id:095189 AJ510039 clone BH-3 prokMSA_id:057275 AJ518207 clone Mul2P1-57 prokMSA_id:057260 AJ518230 clone Mul2P2-26 prokMSA_id:057233 AJ518272 clone Mul2P3-12 prokMSA_id:057215 AJ518289 clone Mul2P3-57 prokMSA_id:056459 AJ518339 clone Neu2P1-93 prokMSA_id:057161 AJ518363 clone Neu4P1-24 prokMSA_id:057158 AJ518366 clone Neu4P1-28 prokMSA_id:055274 AJ518368 clone Neu4P1-33 prokMSA_id:057121 AJ518412 clone Neu4P3-1 prokMSA_id:057113 AJ518421 clone Neu4P3-22 prokMSA_id:056688 AJ518445 clone Neu4P3-6 prokMSA_id:057071 AJ518469 clone Neu4P3-93 prokMSA_id:056859 AJ518745 clone Sai4P3-76 prokMSA_id:095062 AJ582234 Kaistia sp. clone AC13 prokMSA_id:038439 AY037562 soil clone S012 prokMSA_id:023394 AY037644 soil clone S139 prokMSA_id:050643 AY037646 soil clone S142 prokMSA_id:050926 AY037672 earthworm cast clone C014 prokMSA_id:027212 AY037692 earthworm cast clone C039 prokMSA_id:021282 AY037722 earthworm cast clone C074 prokMSA_id:030114 AY037758 earthworm cast clone C156 prokMSA_id:061595 AY043606 alpha clone NOW2.11WL prokMSA_id:061591 AY043610 alpha clone NOW2.2WL prokMSA_id:061590 AY043611 alpha clone NOW2.20WL prokMSA_id:061587 AY043614 alpha clone NOW2.44WL prokMSA_id:061583 AY043621 alpha clone NOW2.80WL prokMSA_id:061580 AY043623 alpha clone NOW2.97WL prokMSA_id:061579 AY043624 alpha clone NOW2.JWL prokMSA_id:061574 AY043631 alpha clone NOS7.118WL prokMSA_id:056549 AY043633 alpha clone NOS7.121WL prokMSA_id:061571 AY043639 alpha clone NOS7.150WL prokMSA_id:061567 AY043645 alpha clone NOS7.45WL prokMSA_id:061565 AY043646 alpha clone NOS7.59WL prokMSA_id:061563 AY043648 alpha clone NOS7.66WL prokMSA_id:061560 AY043651 alpha clone NOS7.84WL prokMSA_id:061483 AY043740 alpha clone NMW3.152WL prokMSA_id:061479 AY043743 alpha clone NMW3.202WL prokMSA_id:061478 AY043744 alpha clone NMW3.26WL prokMSA_id:055877 AY043745 alpha clone NMW3.39WL prokMSA_id:061477 AY043746 alpha clone NMW3.44WL prokMSA_id:061471 AY043752 alpha clone SMW4.114WL prokMSA_id:061473 AY043753 alpha clone SMW4.36WL prokMSA_id:061462 AY043766 alpha clone NMS8.42WL prokMSA_id:061453 AY043775 alpha clone SMS9.45WL prokMSA_id:065558 AY095403 yard-trimming-compost clone S-32 prokMSA_id:065450 AY102337 clone a13151 prokMSA_id:073807 AY143778 Rhodoplanes sp. clone Pr40 prokMSA_id:069515 AY144193 alpha clone LTUA01556 prokMSA_id:076630 AY150921 clone uv12 prokMSA_id:075298 AY150945 alpha clone uv89 prokMSA_id:075769 AY154498 earthworm intestine clone ew03 prokMSA_id:076184 AY159215 RO_isolate_29 prokMSA_id:079323 AY186797 clone unel19 prokMSA_id:079144 AY186801 clone unel2 prokMSA_id:079232 AY186805 clone unel13 prokMSA_id:079216 AY186811 clone uv12 prokMSA_id:079472 AY186835 alpha clone uv89 prokMSA_id:079916 AY192246 alpha clone W2a-2F prokMSA_id:080390 AY192247 alpha clone W2b-2G prokMSA_id:079711 AY192255 alpha clone P2-12E prokMSA_id:080760 AY192261 alpha clone S1a-2D prokMSA_id:080921 AY192262 alpha clone S2-1D prokMSA_id:080190 AY192263 alpha clone S2-1E prokMSA_id:080743 AY192266 alpha clone S2-10A prokMSA_id:085186 AY214687 alpha clone SL2-2-F7R prokMSA_id:083611 AY214737 alpha clone BB-1-H2 prokMSA_id:086194 AY214744 alpha clone BB-1-G4 prokMSA_id:085680 AY214745 alpha clone BB-1-G2 prokMSA_id:084749 AY214805 alpha clone BB-2-G9R prokMSA_id:083545 AY214810 alpha clone BB-2-D5R prokMSA_id:084558 AY214838 alpha clone BB-2-C7F prokMSA_id:081049 AY216729 soil clone 28 prokMSA_id:085247 AY217455 alpha clone WCB88 prokMSA_id:085496 AY242684 soil clone Tc134-112 prokMSA_id:084633 AY251211 alpha clone 1B_14 prokMSA_id:082737 AY271752 alpha clone 4 prokMSA_id:083103 AY271753 alpha clone 5 prokMSA_id:089688 AY289428 soil clone ABS-432 prokMSA_id:094200 AY364053 clone cRI58c prokMSA_id:097273 AY391621 soil clone M5 prokMSA_id:098107 AY391626 soil clone M10 prokMSA_id:096779 AY391633 soil clone M17 prokMSA_id:097349 AY391680 soil clone M64 prokMSA_id:098328 AY394616 alpha clone N8-12 prokMSA_id:095334 AY395090 clone A09R prokMSA_id:096337 AY395100 clone B06R prokMSA_id:096067 AY395120 clone C07R prokMSA_id:098132 AY395140 clone D21ST prokMSA_id:096169 AY395152 clone D39ST prokMSA_id:096283 AY395167 clone F14ST prokMSA_id:004649 D13948 Azorhizobium caulinodans str. MAR 1568 ORS 571 . prokMSA_id:004699 D14428 Rhodopseudomonas sp. str. ANT-P-1. prokMSA_id:004706 D14429 Rhodoplanes roseus str. 941 DSM 5909 . prokMSA_id:004678 D14430 Blastochloris viridis str. F. prokMSA_id:004707 D15063 Rhodopseudomonas sp. str. IL-245. prokMSA_id:004662 D26240 soil from paddy field clone PAD53. prokMSA_id:004677 D26241 soil from paddy field clone PAD54. prokMSA_id:004682 D84629 str. S23438. prokMSA_id:004650 M62790 Ancylobacter aquaticus ATCC 25396 . prokMSA_id:004727 NONE Aquabacter spiritensis str. SPL-1 ATCC 43981 . prokMSA_id:004679 U12913 Azorhizobium caulinodans str. MAR 1568 ORS 571 . prokMSA_id:004705 U62836 clone RB13. prokMSA_id:025155 U81650 clone vadinBA44 prokMSA_id:071579 U85152 alpha clone ACK-DE40 prokMSA_id:069310 U85160 alpha clone ACK-DE46 prokMSA_id:004659 X65571 clone MC 34. prokMSA_id:004684 X65575 str. ssp. MC16 soil clone alpha subclass. prokMSA_id:004686 X65576 str. ssp. MC8 soil clone alpha subclass. prokMSA_id:004660 X65577 clone MC 12. prokMSA_id:004683 X65579 str. ssp. MC10 soil clone alpha subclass. prokMSA_id:004685 X65580 str. ssp. MC20 soil clone alpha subclass. prokMSA_id:004726 X65581 clone MC 5. prokMSA_id:004725 X84527 str. SBR1099. prokMSA_id:004723 X84574 str. SBR2035. prokMSA_id:004729 X84612 str. SBR2082. prokMSA_id:004698 X84623 str. SBR2093. prokMSA_id:004724 X84624 str. SBR2094. prokMSA_id:004670 X97084 str. TM123. prokMSA_id:004720 X97092 str. TM113. prokMSA_id:049091 Y11637 clone 75 prokMSA_id:004728 Z77429 str. 1-420 C62. prokMSA_id:020576 Z82966 sp. clone group T9B 2.28.1.6.9 MSI.TRICHOSPORIUM_SUBGROUP 265 seqs 2.28.1.6.9.018 OTU 1 seq prokMSA_id:004735 M95664 Methylosinus sp. str. LAC. 2.28.1.6.9.021 OTU 1 seq prokMSA_id:020378 AF234728 sludge A20 2.28.1.6.9.022 OTU 1 seq prokMSA_id:023345 U58014 MHP17 2.28.1.6.9.027 OTU 2 seqs prokMSA_id:029896 AF255640 alpha clone Ebpr11 prokMSA_id:032800 AF314432 PHOS-HE47 2.28.1.6.9.028 OTU 1 seq prokMSA_id:030920 AF445126 clone Tc66 2.28.1.6.9.029 OTU 1 seq prokMSA_id:033878 AF445113 clone Tc49 2.28.1.6.9.030 OTU 1 seq prokMSA_id:035424 AY037705 earthworm cast clone C055 2.28.1.6.9.031 OTU 1 seq prokMSA_id:037026 AF423211 soil clone 1152-2 2.28.1.6.9.032 OTU 1 seq prokMSA_id:037162 AY037708 earthworm cast clone C058 2.28.1.6.9.033 OTU 1 seq prokMSA_id:041087 AF418955 clone HTD9 2.28.1.6.9.034 OTU 1 seq prokMSA_id:044127 AF337887 gold mine D33 2.28.1.6.9.035 OTU 1 seq prokMSA_id:049098 AF337877 gold mine D36 2.28.1.6.9.037 OTU 132 seqs prokMSA_id:058411 AB007840 Methylosinus sp. NCIMB 13214 prokMSA_id:058408 AB007841 Methylocystis sp. 18-2 prokMSA_id:058407 AB007842 Alpha methylotroph Hohenstaufen prokMSA_id:058401 AB008108 Methylosinus trichosporium prokMSA_id:004755 AB015608 Methylocystis EB-1 str. EB-1. prokMSA_id:032547 AF107461 Methylosinus pucelana prokMSA_id:004746 AF150779 Methylosinus Methylosinus pAMC447. prokMSA_id:004745 AF150780 Methylosinus Methylosinus pAMC451. prokMSA_id:004744 AF150781 Methylosinus Methylosinus pAMC459. prokMSA_id:004743 AF150786 Methylosinus LW2 str. LW2. prokMSA_id:004742 AF150788 Methylosinus LW3 str. LW3. prokMSA_id:004741 AF150790 Methylocystis LW5 str. LW5. prokMSA_id:004740 AF150802 Methylosinus PW1 str. PW1. prokMSA_id:004739 AF150804 Methylosinus trichosporium. prokMSA_id:004738 AF150805 Methylocystis parvus. prokMSA_id:004753 AF153281 Methylocystis WI 14 str. WI 14. prokMSA_id:004747 AF177298 str. AML-A3. prokMSA_id:004748 AF177299 str. AML-A6. prokMSA_id:070915 AF177300 II methanotroph AML-A13 prokMSA_id:023844 AF177301 II methanotroph AML-A14 prokMSA_id:033183 AF177302 II methanotroph AML-E12 prokMSA_id:016717 AF177303 II methanotroph AML-E13 prokMSA_id:028221 AF177304 II methanotroph AML-F18 prokMSA_id:033422 AF177305 I methanotroph T1-01 prokMSA_id:031473 AF177306 I methanotroph T1-02 prokMSA_id:041611 AF177315 II methanotroph T2-01 prokMSA_id:040967 AF177316 II methanotroph T2-02 prokMSA_id:041039 AF177317 II methanotroph T2-03 prokMSA_id:023048 AF177318 II methanotroph T2-04 prokMSA_id:071004 AF177319 II methanotroph T2-06 prokMSA_id:026035 AF177320 II methanotroph T2-07 prokMSA_id:023386 AF177321 II methanotroph T2-09 prokMSA_id:042126 AF177322 II methanotroph T2-10 prokMSA_id:023134 AF177323 II methanotroph T2-13 prokMSA_id:025361 AF177324 II methanotroph T2-17 prokMSA_id:036920 AF358021 clone LO13.7 prokMSA_id:068635 AF487378 II methanotroph CSC-1 prokMSA_id:030352 AJ229205 from anoxic bulk soil clone BSV53 prokMSA_id:028443 AJ414656 Methylocystis sp. SV97 strain SV97 prokMSA_id:055280 AJ431384 Methylocystis sp. SC2 strain SC2 prokMSA_id:064234 AJ431385 Methylosinus trichosporium strain KS21 prokMSA_id:064231 AJ458466 Methylocystis sp. 62/12 strain 62/12 prokMSA_id:064230 AJ458467 Methylocystis sp. 495/4 strain 495/4 prokMSA_id:056291 AJ458468 Methylosinus sporium strain 44/2 prokMSA_id:070162 AJ458469 Methylosinus sporium strain 9/1 prokMSA_id:064228 AJ458470 Methylocystis sp. IMET 10484 strain IMET 10484 prokMSA_id:064227 AJ458471 Methylocystis sp. IMET 10486 strain IMET 10486 prokMSA_id:064225 AJ458472 Methylocystis sp. IMET 10489 strain IMET 10489 prokMSA_id:056422 AJ458473 Methylocystis echinoides strain IMET 10491 prokMSA_id:064226 AJ458474 Methylosinus trichosporium strain IMET 10561 prokMSA_id:064224 AJ458475 Methylocystis sp. 51 strain 51 prokMSA_id:064223 AJ458476 Methylocystis parvus strain 81 prokMSA_id:064222 AJ458477 Methylosinus trichosporium strain SM6 IMV B-3060 prokMSA_id:064221 AJ458478 Methylosinus sporium strain SE2 prokMSA_id:055601 AJ458479 Methylocystis sp. 42/22 strain 42/22 prokMSA_id:064220 AJ458480 Methylosinus sp. 430/2 strain 430/2 prokMSA_id:064219 AJ458481 Methylosinus trichosporium strain 33/1 prokMSA_id:056666 AJ458482 Methylosinus trichosporium strain 1 prokMSA_id:064217 AJ458483 Methylocystis sp. Pi5/4 strain Pi5/4 prokMSA_id:064218 AJ458484 Methylocystis sp. 50/42a strain 50/42a prokMSA_id:074224 AJ458485 Methylosinus trichosporium strain SC10 prokMSA_id:071224 AJ458486 Methylosinus sporium strain 8 prokMSA_id:070519 AJ458487 Methylocystis sp. Ch22 strain Ch22 prokMSA_id:072993 AJ458488 Methylosinus sporium strain SK13 prokMSA_id:064213 AJ458489 Methylosinus sporium strain F10/1b prokMSA_id:056187 AJ458490 Methylocystis sp. H9a strain H9a prokMSA_id:064211 AJ458491 Methylosinus trichosporium strain O19/1 prokMSA_id:064210 AJ458493 Methylocystis sp. KS8a strain KS8a prokMSA_id:064209 AJ458494 Methylocystis sp. KS12 strain KS12 prokMSA_id:064208 AJ458496 Methylosinus trichosporium strain KS24b prokMSA_id:064207 AJ458497 Methylocystis sp. KS3 strain KS3 prokMSA_id:064206 AJ458498 Methylocystis sp. KS7 strain KS7 prokMSA_id:056124 AJ458499 Methylocystis sp. M42/1 strain M42/1 prokMSA_id:064205 AJ458500 Methylocystis sp. 10 strain 10 prokMSA_id:064204 AJ458501 Methylocystis sp. 39 strain 39 prokMSA_id:064203 AJ458502 Methylocystis echinoides strain 2 prokMSA_id:064201 AJ458503 Methylocystis sp. M31 strain M31 prokMSA_id:064202 AJ458504 Methylocystis sp. F10V2a strain F10V2a prokMSA_id:064200 AJ458505 Methylocystis sp. KS31 strain KS31 prokMSA_id:064199 AJ458506 Methylocystis sp. KS33 strain KS33 prokMSA_id:064198 AJ458507 Methylocystis sp. 82 strain 82 prokMSA_id:064197 AJ458508 Methylocystis parvus strain 57 prokMSA_id:064196 AJ458509 Methylosinus sp. D15a strain D15a prokMSA_id:072367 AJ458510 Methylocystis sp. 50/54 strain 50/54 prokMSA_id:055990 AY007196 Methylocystis sp. WRS complete prokMSA_id:052070 AY007293 Methylosinus sp. LW4 prokMSA_id:035967 AY007294 Methylosinus sp. LW8 prokMSA_id:061187 AY080911 clone UP4 prokMSA_id:061188 AY080912 clone UP6 prokMSA_id:056327 AY080914 clone UP7 prokMSA_id:061191 AY080917 clone UP5 prokMSA_id:094968 AY203749 Methylocystaceae clone 9E-T2B14 prokMSA_id:094382 AY203750 Methylocystaceae clone 9E-T2C14 prokMSA_id:095144 AY203751 Methylocystaceae clone 9E-T2P17 prokMSA_id:094708 AY203752 II methanotroph clone 8nGW-T2B108 prokMSA_id:094586 AY203753 II methanotroph clone 8nGW-T2G134 prokMSA_id:094813 AY203754 II methanotroph clone 8nGW-T2X105 prokMSA_id:094469 AY203755 Methylocystis sp. clone 9E-T2A1 prokMSA_id:094512 AY203756 Methylocystis sp. clone 9E-T2C31 prokMSA_id:095085 AY203757 Methylocystis sp. clone 8E-T2A1 prokMSA_id:094685 AY203758 Methylocystis sp. clone 8nGW-T2E116 prokMSA_id:095139 AY203759 Methylocystis sp. clone 8nGW-T2I132 prokMSA_id:095155 AY203760 Methylocystis sp. clone 8nGW-T2Q133 prokMSA_id:095173 AY203761 Methylocystis sp. clone 8nGW-T2R128 prokMSA_id:094604 AY203762 Methylocystis sp. clone 8nGW-T2Y107 prokMSA_id:095124 AY203763 Methylocystis sp. clone 8GW-T2FF27 prokMSA_id:094988 AY203764 Methylocystis sp. clone 17E-T2A11 prokMSA_id:094742 AY203765 Methylocystis sp. clone 17nGW-T2A201 prokMSA_id:095043 AY203766 Methylocystis sp. clone 17nGW-T2E208 prokMSA_id:094903 AY203767 Methylocystis sp. clone 17nGW-T2F217 prokMSA_id:094364 AY203768 Methylocystis sp. clone 17nGW-T2G213 prokMSA_id:095081 AY203769 Methylocystis sp. clone 17nGW-T2H214 prokMSA_id:094676 AY203770 Methylocystis sp. clone 17nGW-T2M251 prokMSA_id:094332 AY203771 Methylocystis sp. clone 17E-T2R21 prokMSA_id:094719 AY203772 Methylocystis sp. clone 112E-T2A12 prokMSA_id:094641 AY203773 Methylocystis sp. clone 112E-T2B39 prokMSA_id:095051 AY203774 Methylocystis sp. clone 112nGW-T2C325 prokMSA_id:094896 AY203775 Methylocystis sp. clone 112E-T2D18 prokMSA_id:095138 AY203776 Methylocystis sp. clone 112E-T2E5 prokMSA_id:094497 AY203777 Methylocystis sp. clone 112nGW-T2H310 prokMSA_id:094652 AY203778 Methylocystis sp. clone 112nGW-T2K307 prokMSA_id:094773 AY203779 Methylocystis sp. clone 112E-T2V21 prokMSA_id:089125 AY328588 HOClCi39 prokMSA_id:088700 AY328591 HOClCi42 prokMSA_id:095372 AY424827 clone mv13.6 prokMSA_id:004736 L20845 str. B-3060. prokMSA_id:004737 M95665 Methylosinus sporium str. provided by Y.Trotsenko. prokMSA_id:004752 U81595 Methylocystis M str. M. prokMSA_id:004749 Y18442 str. LR1. prokMSA_id:027344 Y18945 Methylocystis parvus prokMSA_id:042706 Y18946 Methylosinus sporium prokMSA_id:044508 Y18947 Methylosinus trichosporium 2.28.1.6.9.038 OTU 1 seq prokMSA_id:065465 AY102320 clone a13113 2.28.1.6.9.039 OTU 1 seq prokMSA_id:066316 AF507002 Br-20 2.28.1.6.9.040 OTU 1 seq prokMSA_id:067298 AF495390 clone F10.2 2.28.1.6.9.041 OTU 1 seq prokMSA_id:076687 AY159180 RO_clone_79 2.28.1.6.9.042 OTU 1 seq prokMSA_id:081653 AY192043 alpha clone G79-GM4R 2.28.1.6.9.043 OTU 1 seq prokMSA_id:082477 AY242672 soil clone Tc131-45 2.28.1.6.9.044 OTU 1 seq prokMSA_id:089145 AY170120 Candidatus Meganema perideroedes strain Gr28 2.28.1.6.9.045 OTU 1 seq prokMSA_id:089146 AY170117 Candidatus Meganema perideroedes strain Gr2 2.28.1.6.9.046 OTU 1 seq prokMSA_id:089221 AY170119 Candidatus Meganema perideroedes strain Gr10 2.28.1.6.9.047 OTU 1 seq prokMSA_id:089529 AY170118 Candidatus Meganema perideroedes strain Gr5 2.28.1.6.9.048 OTU 1 seq prokMSA_id:094399 AY203783 II methanotroph clone 8nGW-T2T127 2.28.1.6.9.049 OTU 1 seq prokMSA_id:094537 AY203781 II methanotroph clone 8nGW-T2B122 2.28.1.6.9.050 OTU 1 seq prokMSA_id:094706 AY203780 II methanotroph clone 8nGW-T2C106 2.28.1.6.9.051 OTU 1 seq prokMSA_id:094841 AY203784 II methanotroph clone 112nGW-T2T303 2.28.1.6.9.999 poor quality 106 seqs prokMSA_id:050497 AB040501 II methanotroph metano-II prokMSA_id:079795 AB089953 clone:HN76 prokMSA_id:051604 AF016528 HRS-15 prokMSA_id:021604 AF016757 soil clone S-47 prokMSA_id:042851 AF078213 Grassland soil clone saf1_310 prokMSA_id:054771 AF126914 alpha clone ox3 prokMSA_id:024203 AF126927 alpha clone ox4 prokMSA_id:021560 AF126928 alpha clone c2 prokMSA_id:034738 AF126929 alpha clone ox5 prokMSA_id:053468 AF126930 alpha clone c3 prokMSA_id:020228 AF126934 alpha clone ox2 prokMSA_id:020948 AF126936 alpha clone ox1 prokMSA_id:052914 AF126937 alpha clone c1 prokMSA_id:036211 AF175641 WJGRT-126 prokMSA_id:041954 AF179599 alpha clone ERRII1 prokMSA_id:017108 AF179600 alpha clone ERRII2 prokMSA_id:018212 AF179601 alpha clone ERRII3 prokMSA_id:070308 AF179602 alpha clone ERBII3 prokMSA_id:074296 AF179607 alpha clone RRII3 prokMSA_id:074489 AF179609 alpha clone RRII5 prokMSA_id:046344 AF179610 alpha clone ERBII2 prokMSA_id:046906 AF183828 Methanotroph FL20 prokMSA_id:019863 AF183830 Methanotroph WI-11 prokMSA_id:048565 AF183831 Methanotroph WI-13 prokMSA_id:041576 AF183832 Methanotroph WI-14 prokMSA_id:038379 AF183833 Methanotroph WI-15 prokMSA_id:034047 AF183834 Methanotroph M5 prokMSA_id:046360 AF183835 Methanotroph M8 prokMSA_id:021788 AF183836 Methanotroph M11 prokMSA_id:035141 AF183837 Methanotroph M13 prokMSA_id:074556 AF186374 II methanotroph R19 prokMSA_id:049527 AF186375 II methanotroph R20 prokMSA_id:032233 AF186376 II methanotroph R22 prokMSA_id:074037 AF226258 maize root Zmrc50 prokMSA_id:050923 AF245325 SA10 prokMSA_id:071499 AF270958 clone IAFR502 prokMSA_id:025391 AF277739 MB9a-RC5 prokMSA_id:074189 AF277744 MB9a-RC6 prokMSA_id:073380 AF283226 alpha MB9a-MO2 prokMSA_id:018717 AF283238 Uni-MO2 prokMSA_id:050027 AF301416 peat bog 4 prokMSA_id:045064 AF357991 clone LO12.10 prokMSA_id:054326 AF358011 clone LO13.19 prokMSA_id:036774 AF392628 clone CDF4 prokMSA_id:029942 AF428840 clone CR98-24-34 prokMSA_id:052771 AF428841 clone CR98-24-35 prokMSA_id:077196 AF431061 alpha clone N11.127WL prokMSA_id:076058 AF431067 alpha clone N12.03WL prokMSA_id:075802 AF431151 alpha clone C32.24SM prokMSA_id:075497 AF431186 alpha clone C46.42PG prokMSA_id:066636 AF432261 Ellin452 prokMSA_id:024761 AF450001 Methylocystaceae clone GW60-13-15 prokMSA_id:044462 AF450002 Methylocystaceae clone GW60-13-61 prokMSA_id:045320 AF450003 Methylocystaceae clone GW60-13-6 prokMSA_id:043931 AF450004 Methylocystaceae clone GW70-10-11 prokMSA_id:031023 AF450005 Methylocystaceae clone GW70-10-29 prokMSA_id:032730 AF450006 Methylocystaceae clone GW70-10-39 prokMSA_id:060506 AF486574 Methylocystis minimus prokMSA_id:072305 AF498738 Ellin356 prokMSA_id:065220 AF515617 clone Dpcom17 prokMSA_id:072375 AF523319 clone P4-62 prokMSA_id:036559 AJ232853 clone LRS29 prokMSA_id:021038 AJ289931 1204-53l prokMSA_id:046754 AJ292810 WR841 clone WR841 prokMSA_id:071068 AJ296594 DGGE band PSBAC-14 prokMSA_id:020025 AJ296595 DGGE band PSBAC-15 prokMSA_id:070384 AJ300121 alpha GE16 isolate GE16 prokMSA_id:045978 AJ300122 alpha GE17 isolate GE17 prokMSA_id:052764 AJ300123 alpha GE18 isolate GE18 prokMSA_id:072100 AJ300125 alpha GE20 isolate GE20 prokMSA_id:071407 AJ300127 alpha GE22 isolate GE22 prokMSA_id:057281 AJ518198 clone Mul2P1-37 prokMSA_id:057115 AJ518419 clone Neu4P3-20 prokMSA_id:056363 AJ518556 clone Qui4P1-84 prokMSA_id:061460 AY043767 alpha clone NMS8.85WL prokMSA_id:061456 AY043774 alpha clone SMS9.41WL prokMSA_id:086608 AY092352 clone BI2 prokMSA_id:084061 AY092353 clone BI68 prokMSA_id:086088 AY092354 clone BI25 prokMSA_id:065474 AY102308 clone a13165 prokMSA_id:074389 AY144199 alpha clone LTUA03314 prokMSA_id:073731 AY144205 alpha clone LTUA06514 prokMSA_id:076341 AY150950 alpha clone uv80 prokMSA_id:079349 AY186840 alpha clone uv80 prokMSA_id:081915 AY187493 clone SC83 prokMSA_id:080535 AY192251 alpha clone P1-3E prokMSA_id:080315 AY192268 alpha clone S3-4C prokMSA_id:091271 AY345567 clone T7-M-H08 prokMSA_id:093809 AY364077 alpha clone cRI47d prokMSA_id:095386 AY395091 alpha clone A11R prokMSA_id:095768 AY395107 clone B20R prokMSA_id:004757 L20803 Methylocystis pyriformis str. 14. prokMSA_id:004758 L20844 Methylocystis minimus str. 42. prokMSA_id:004756 L20848 Methylocystis echinoides str. 2. prokMSA_id:004731 M29024 Methylosinus trichosporium str. OB3b. prokMSA_id:004732 M29025 Methylosporovibrio methanica str. 81Z. prokMSA_id:004733 M29026 Methylocystis parvus str. OBBP. prokMSA_id:004734 M95663 Methylosinus sp. str. B. prokMSA_id:004750 U43630 clone EH-20. prokMSA_id:004751 U43631 clone EH-23. prokMSA_id:073549 U85154 alpha clone ACK-DE11 prokMSA_id:071847 U85159 alpha clone ACK-SA8 prokMSA_id:004754 X97083 str. TM91. prokMSA_id:031140 Y18587 Methylosinus sp. strain R16 prokMSA_id:039632 Y18588 Methylosinus sp. strain R17 prokMSA_id:050967 Y18589 Methylosinus sp. strain R18 2.28.1.6.10 BEI.INDICA_SUBGROUP 82 seqs 2.28.1.6.10.001 OTU 1 seq prokMSA_id:004765 X97077 str. TM19. 2.28.1.6.10.002 OTU 2 seqs prokMSA_id:050205 AF145832 Metal-contaminated soil clone K20-34 prokMSA_id:004764 Y07582 clone DA067. 2.28.1.6.10.003 OTU 1 seq prokMSA_id:004762 X97076 str. TM9. 2.28.1.6.10.004 OTU 1 seq prokMSA_id:004761 Y17144 unnamed organism. 2.28.1.6.10.005 OTU 1 seq prokMSA_id:004760 U87772 Afipia genosp. 6 str. G8665. 2.28.1.6.10.006 OTU 1 seq prokMSA_id:019989 AJ289986 FukuS110 2.28.1.6.10.007 OTU 5 seqs prokMSA_id:036961 AF200694 alpha UP1 prokMSA_id:024886 AF407383 clone RB7C4 prokMSA_id:027469 AF407384 clone RB7C5 prokMSA_id:061190 AY080913 clone UP8 prokMSA_id:066880 AY096132 clone M1-49 2.28.1.6.10.008 OTU 1 seq prokMSA_id:025697 AJ229208 from anoxic bulk soil clone BSV56 2.28.1.6.10.009 OTU 1 seq prokMSA_id:029077 AF358012 clone LO13.2 2.28.1.6.10.010 OTU 1 seq prokMSA_id:031950 AJ344203 isolate BUG-236 2.28.1.6.10.011 OTU 1 seq prokMSA_id:032333 AF200697 alpha UP3 2.28.1.6.10.012 OTU 1 seq prokMSA_id:058103 AF498722 Ellin340 2.28.1.6.10.013 OTU 1 seq prokMSA_id:043530 AJ290032 GKS2-215 2.28.1.6.10.014 OTU 1 seq prokMSA_id:045223 AY038704 clone TAF-A108 2.28.1.6.10.015 OTU 1 seq prokMSA_id:051161 AF234713 sludge A28b 2.28.1.6.10.016 OTU 1 seq prokMSA_id:051286 AF200695 alpha UP2 2.28.1.6.10.017 OTU 3 seqs prokMSA_id:078050 AB089096 alpha clone:Rs-K73 prokMSA_id:063275 AF523946 clone FW131 prokMSA_id:061179 AY080923 clone EOH1 2.28.1.6.10.018 OTU 1 seq prokMSA_id:063268 AF523952 clone FW8 2.28.1.6.10.019 OTU 2 seqs prokMSA_id:064189 AJ491847 Methylocella sp. BL2 prokMSA_id:083530 AJ555244 Methylocella tundrae strain T4 2.28.1.6.10.020 OTU 1 seq prokMSA_id:076418 AJ518775 alpha clone JG37-AG-107 2.28.1.6.10.021 OTU 1 seq prokMSA_id:076517 AJ532683 alpha clone Gitt-KF-194 2.28.1.6.10.022 OTU 1 seq prokMSA_id:078811 AJ536868 alpha clone JG30a-KF-59 2.28.1.6.10.023 OTU 1 seq prokMSA_id:080741 AY192274 alpha clone W2b-8B 2.28.1.6.10.024 OTU 1 seq prokMSA_id:085004 AY221043 clone CCM12a 2.28.1.6.10.999 poor quality 50 seqs prokMSA_id:026712 AF078191 Grassland soil clone saf1_119 prokMSA_id:033419 AF078194 Grassland soil clone saf1_122 prokMSA_id:043812 AF078207 Grassland soil clone saf1_304 prokMSA_id:033733 AF078221 Grassland soil clone saf1_319 prokMSA_id:050008 AF126926 alpha clone c4 prokMSA_id:044009 AF126931 alpha clone c5 prokMSA_id:046161 AF141421 alpha clone CR-PA22 prokMSA_id:037502 AF141432 alpha clone CR-PA53 prokMSA_id:043908 AF145854 Metal-contaminated soil clone K20-61 prokMSA_id:024091 AF226241 maize root Zmrc23 prokMSA_id:039111 AF314453 PHOS-HD33 prokMSA_id:020054 AF358023 clone LO13.9 prokMSA_id:017666 AF428827 clone CR98-24-21 prokMSA_id:051014 AF428837 clone CR98-24-31 prokMSA_id:076997 AF431162 alpha clone S37.16SM prokMSA_id:067114 AF499340 clone JCL4-120 prokMSA_id:089129 AF523070 alpha prokMSA_id:050419 AJ233469 clone WR103 prokMSA_id:048314 AJ233488 clone WR185 prokMSA_id:024865 AJ233489 clone WR189 prokMSA_id:072859 AJ286732 Pseudomonas sp. isolate DGGE bands H & h prokMSA_id:047220 AJ292815 WR865 clone WR865 prokMSA_id:020913 AJ419644 clone R24 prokMSA_id:043072 AJ421128 clone C12-K37 prokMSA_id:062606 AJ504509 isolate P1CN42 prokMSA_id:062595 AJ504524 isolate P1CN63 prokMSA_id:062590 AJ504530 isolate P1CN70 prokMSA_id:057292 AJ518187 clone Mul2P1-13 prokMSA_id:057265 AJ518220 clone Mul2P2-10 prokMSA_id:057210 AJ518294 clone Mul2P3-64 prokMSA_id:057211 AJ518295 clone Mul2P3-7 prokMSA_id:061578 AY043625 alpha clone NOW2.NWL prokMSA_id:066849 AY096164 clone F2-28 prokMSA_id:076865 AY174202 Acidobacteriales clone WS2096 prokMSA_id:080727 AY192258 alpha clone P3-3A prokMSA_id:080510 AY193047 clone LLB10 prokMSA_id:091836 AY330246 alpha clone g51-C2 prokMSA_id:091671 AY330247 alpha clone g51-C5 prokMSA_id:091940 AY330248 alpha clone g51-C7 prokMSA_id:091922 AY330249 alpha clone g51-C8 prokMSA_id:096382 AY395172 clone G07K prokMSA_id:004766 D28800 str. S18. prokMSA_id:004763 M34128 Rhodopseudomonas acidophila str. 7050 ATCC 25092 . prokMSA_id:004767 M55491 Azorhizobium caulinodans str. MAR 1568 ORS 571 . prokMSA_id:004759 M59060 Beijerinckia indica subsp. indica ATCC 9039 . prokMSA_id:036135 U81751 clone vadinHB86 prokMSA_id:039054 U85155 alpha clone ACK-DE24 prokMSA_id:047357 U85157 alpha clone ACK-M37 prokMSA_id:048693 U85161 alpha clone ACK-DE48 prokMSA_id:004768 X91891 str. 1. 2.28.1.6.11 METHYLOBACTERIA_SUBGROUP 391 seqs 2.28.1.6.11.1 MLB.EXTORQUENS_SUBGROUP 82 seqs 2.28.1.6.11.1.005 OTU 34 seqs prokMSA_id:048113 AF148859 Methylobacterium sp. P1 prokMSA_id:052319 AF198624 Methylobacterium sp. CM4 prokMSA_id:043152 AF267912 Methylobacterium extorquens prokMSA_id:068822 AF293375 Methylobacterium extorquens ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:036388 AF321031 Methylobacterium sp. GOBB3-216 prokMSA_id:042869 AF395030 Methylobacterium sp. TD4 prokMSA_id:032399 AF395034 Methylobacterium sp. G296-15 prokMSA_id:086781 AF514774 Methylobacterium podarium prokMSA_id:062973 AF526936 Methylobacterium sp. clone 84-14 rrn prokMSA_id:055455 AF531770 Methylobacterium extorquens prokMSA_id:040728 AJ011420 isolate B1 prokMSA_id:018890 AJ400913 Methylobacterium extorquens strain IAM 1081 prokMSA_id:041246 AJ400914 Methylobacterium extorquens strain IAM 12630 prokMSA_id:052495 AJ400915 Methylobacterium extorquens strain IAM 12631 prokMSA_id:038602 AJ400916 Methylobacterium extorquens strain IAM 12632 prokMSA_id:042146 AJ400917 Methylobacterium extorquens strain IAM 12639 prokMSA_id:029560 AJ400918 Methylobacterium rhodinum strain JAM 2811 prokMSA_id:031223 AJ400962 Methylobacterium sp. YU9 prokMSA_id:063993 AJ491838 Methylobacterium sp. B35 strain B35 prokMSA_id:059184 AY136088 Methylobacterium extorquens prokMSA_id:075291 AY154513 earthworm intestine clone ew36 prokMSA_id:084672 AY251818 Methylobacterium sp. BJ001 and -23S intergenic spacer complete ; and 23S prokMSA_id:087501 AY268306 clone B3 small subunit prokMSA_id:087437 AY268313 clone F4 small subunit prokMSA_id:093518 AY365229 Methylobacterium extorquens strain UCM B-3362 prokMSA_id:004783 D25305 Methylobacterium sp. str. GK101. prokMSA_id:004787 D25306 Methylobacterium sp. str. GK118. prokMSA_id:004782 D32224 Methylobacterium extorquens JCM 2802 . prokMSA_id:004786 D32228 Methylobacterium rhodesianum JCM 2810. prokMSA_id:004784 D32229 Methylobacterium rhodinum JCM 2811 . prokMSA_id:004776 D32230 Methylobacterium zatmanii str. MA1/5 JCM 2819. prokMSA_id:004785 M95654 Methylobacterium sp. str. PK-1 S.Hirano. prokMSA_id:004781 M95655 Methylobacterium sp. str. PR-6 S.Hirano. prokMSA_id:004788 U58018 Methylobacterium APW. 2.28.1.6.11.1.006 OTU 1 seq prokMSA_id:004772 X74139 unnamed organism. 2.28.1.6.11.1.007 OTU 1 seq prokMSA_id:060293 AY129787 Methylobacterium sp. clone GCPF11 2.28.1.6.11.1.008 OTU 1 seq prokMSA_id:076105 AJ519622 alpha clone Sh765B-TzT-3 2.28.1.6.11.1.009 OTU 1 seq prokMSA_id:082247 AY234142 Methylobacterium sp. BJ001 2.28.1.6.11.1.010 OTU 1 seq prokMSA_id:086834 AY268320 clone E10 small subunit 2.28.1.6.11.1.011 OTU 3 seqs prokMSA_id:087575 AY268308 clone C3 small subunit prokMSA_id:087018 AY268319 clone E9 small subunit prokMSA_id:087613 AY268333 clone E5 small subunit 2.28.1.6.11.1.012 OTU 1 seq prokMSA_id:087595 AY268226 clone B2 small subunit 2.28.1.6.11.1.013 OTU 1 seq prokMSA_id:093863 AY366072 Methylobacterium extorquens strain UCM B-3368 2.28.1.6.11.1.999 poor quality 38 seqs prokMSA_id:024633 AB010599 clone ASB006 prokMSA_id:070463 AF227128 Methylobacterium diclorometanicum prokMSA_id:018973 AF234154 #0319-7H8 prokMSA_id:021896 AF367387 Methylobacterium sp. clone D060 prokMSA_id:085734 AF499910 clone ABLCf14 prokMSA_id:069699 AF530930 Alpha sj56 prokMSA_id:069573 AF530957 Alpha zj30 prokMSA_id:076968 AF538345 isolate ENV-MO-0013 prokMSA_id:081314 AJ549955 Methylobacterium sp. BJ001 clone 1 prokMSA_id:082248 AJ549956 Methylobacterium sp. BJ001 and IGS clone 2 prokMSA_id:071504 AY009403 Methylobacterium portugalicum prokMSA_id:070862 AY009404 Methylobacterium suomicum prokMSA_id:023010 AY039383 Soil S53M1 prokMSA_id:040902 AY039385 Soil S85M1 prokMSA_id:059367 AY081206 DGGE band U2 prokMSA_id:063022 AY122602 clone OSS-15 prokMSA_id:090688 AY198380 Furfural-degrading A1 prokMSA_id:081626 AY234143 Methylobacterium sp. BJ001 and -23S intergenic spacer region prokMSA_id:087570 AY268283 clone G4 small subunit prokMSA_id:087204 AY268286 clone B6 small subunit prokMSA_id:087434 AY268292 clone B2 small subunit prokMSA_id:087511 AY268343 clone A10 small subunit prokMSA_id:094087 AY357997 Methylobacterium sp. iRII2 prokMSA_id:093344 AY358000 Methylobacterium sp. iRIII1 prokMSA_id:093303 AY358005 Methylobacterium sp. iRIV1 prokMSA_id:093230 AY364030 Methylobacterium sp. iEIV8 prokMSA_id:004777 L20804 Methylobacterium zatmanii str. Ps.135 NCIMB 12243 . prokMSA_id:004780 L20847 Methylobacterium extorquens NCIMB 9399 . prokMSA_id:004769 L20849 Methylobacterium rhodinum NCIMB 9421 . prokMSA_id:004770 L20850 Methylobacterium rhodesianum str. Ps.1 NCIMB 12249 . prokMSA_id:004779 M29027 Methylobacterium extorquens str. AM1. prokMSA_id:004773 M29029 Methylobacterium sp. str. DM4. prokMSA_id:004775 M95653 Methylobacterium sp. str. M27 NCIMB 9686. prokMSA_id:004774 M95656 Methylobacterium extorquens NCIMB 9399 . prokMSA_id:004771 NONE Methylobacterium extorquens ATCC 43645 . prokMSA_id:043308 X89908 Methylobacterium sp. PC5.20 strain PC5.20 prokMSA_id:050841 X89913 Methylobacterium sp. BF1 strain BF1 prokMSA_id:004778 X91534 clone K19. 2.28.1.6.11.2 MLB.RADIOTOLERANS_SUBGROUP 199 seqs 2.28.1.6.11.2.002 OTU 2 seqs prokMSA_id:068458 AF459799 Symbiont cf. Methylobacterium of Acromyrmex octospinosus prokMSA_id:004805 D32234 Methylobacterium sp. str. F37. 2.28.1.6.11.2.005 OTU 1 seq prokMSA_id:004803 AB013079 str. MBIC3401. 2.28.1.6.11.2.006 OTU 1 seq prokMSA_id:004802 D32236 Methylobacterium sp. str. F48. 2.28.1.6.11.2.007 OTU 1 seq prokMSA_id:004797 Z23159 Blastobacter sp. str. PC30.44. 2.28.1.6.11.2.010 OTU 1 seq prokMSA_id:004794 AB015566 str. BD5-10. 2.28.1.6.11.2.013 OTU 7 seqs prokMSA_id:077836 AB089094 alpha clone:Rs-A44 prokMSA_id:037847 AF324201 Methylobacterium sp. V3 prokMSA_id:004793 AJ223453 str. 6c. prokMSA_id:077549 AY167835 Methylobacterium sp. SAFR-026 prokMSA_id:087522 AY268326 clone F1 small subunit prokMSA_id:092156 AY359833 alpha clone cEIII39 prokMSA_id:004791 Z23156 Blastobacter sp. str. BF10. 2.28.1.6.11.2.014 OTU 5 seqs prokMSA_id:072323 AJ276806 Methylobacterium sp. strain LMG-19419 prokMSA_id:087290 AY268267 clone D11 small subunit prokMSA_id:086841 AY268287 clone F5 small subunit prokMSA_id:086903 AY268288 clone B8 small subunit prokMSA_id:087758 AY268289 clone H7 small subunit 2.28.1.6.11.2.015 OTU 1 seq prokMSA_id:056219 AY129803 alpha clone GCPF34 2.28.1.6.11.2.020 OTU 8 seqs prokMSA_id:064264 AF467686 Rhizobium sp. xct7 prokMSA_id:064263 AF467687 Rhizobium sp. xct8 prokMSA_id:064261 AF467688 Rhizobium sp. xct9 prokMSA_id:056064 AF467689 Rhizobium sp. xct10 prokMSA_id:064262 AF467690 Rhizobium sp. xct12 prokMSA_id:064260 AF467691 Rhizobium sp. xct13 prokMSA_id:064259 AF467692 Rhizobium sp. xct14 prokMSA_id:064258 AF467693 Rhizobium sp. xct16 2.28.1.6.11.2.021 OTU 1 seq prokMSA_id:029489 AB027626 Methylobacterium sp. B34 2.28.1.6.11.2.022 OTU 1 seq prokMSA_id:058513 AB072710 clone:pHAuB-15 2.28.1.6.11.2.024 OTU 78 seqs prokMSA_id:047235 AB027621 Methylobacterium sp. B23 prokMSA_id:021034 AB027622 Methylobacterium sp. B25 prokMSA_id:033224 AB027627 Methylobacterium sp. B38 prokMSA_id:077609 AB074616 alpha clone:APe2_3 prokMSA_id:024700 AB074668 Alpha D-C3-20A prokMSA_id:019442 AB074749 Alpha S-Su1-8E prokMSA_id:074194 AF220330 O18E10 prokMSA_id:074393 AF361189 Methylobacterium sp. A4 prokMSA_id:029815 AF395035 Methylobacterium sp. G296-5 prokMSA_id:004799 AJ250801 Methylobacterium fujisawaense DSM 5686. prokMSA_id:035133 AJ292612 WD2113 clone WD2113 prokMSA_id:049941 AJ299223 Methylobacterium sp. 2.7 strain 2.7 prokMSA_id:030821 AJ299224 Methylobacterium sp. 2.9 strain 2.9 prokMSA_id:018689 AJ400911 Methylobacterium radiotolerans strain IAM 12098 prokMSA_id:019956 AJ400912 Methylobacterium radiotolerans strain IAM 12099 prokMSA_id:026317 AJ400919 Methylobacterium mesophilicum strain JCM 2829 prokMSA_id:027420 AJ400922 Methylobacterium sp. HO1 prokMSA_id:026487 AJ400923 Methylobacterium sp. HO2 prokMSA_id:030325 AJ400924 Methylobacterium sp. HO3 prokMSA_id:018854 AJ400925 Methylobacterium sp. HO4 prokMSA_id:019788 AJ400926 Methylobacterium sp. HO5 prokMSA_id:043092 AJ400927 Methylobacterium sp. HO6 prokMSA_id:024391 AJ400928 Methylobacterium sp. HO7 prokMSA_id:021173 AJ400929 Methylobacterium sp. KA1 prokMSA_id:022895 AJ400930 Methylobacterium sp. KA2 prokMSA_id:033205 AJ400931 Methylobacterium sp. KA3 prokMSA_id:036079 AJ400932 Methylobacterium sp. KA4 prokMSA_id:044662 AJ400933 Methylobacterium sp. KA5 prokMSA_id:027307 AJ400934 Methylobacterium sp. KA6 prokMSA_id:026618 AJ400935 Methylobacterium sp. KA8 prokMSA_id:029070 AJ400936 Methylobacterium sp. KP26 prokMSA_id:051362 AJ400937 Methylobacterium sp. KP28 prokMSA_id:046070 AJ400938 Methylobacterium sp. NI2 prokMSA_id:050594 AJ400939 Methylobacterium sp. NI3 prokMSA_id:025318 AJ400940 Methylobacterium sp. NI4 prokMSA_id:031590 AJ400942 Methylobacterium sp. NI6 prokMSA_id:074498 AJ400943 Methylobacterium sp. NI7 prokMSA_id:040133 AJ400944 Methylobacterium sp. NI8 prokMSA_id:042192 AJ400945 Methylobacterium sp. NP11 prokMSA_id:036047 AJ400946 Methylobacterium sp. NP19 prokMSA_id:020663 AJ400947 Methylobacterium sp. NP20 prokMSA_id:021049 AJ400948 Methylobacterium sp. NP22 prokMSA_id:047102 AJ400949 Methylobacterium sp. NP24 prokMSA_id:052122 AJ400950 Methylobacterium sp. SO2 prokMSA_id:018894 AJ400951 Methylobacterium sp. SO3 prokMSA_id:051410 AJ400952 Methylobacterium sp. SO4 prokMSA_id:033943 AJ400953 Methylobacterium sp. TO1 prokMSA_id:028449 AJ400954 Methylobacterium sp. TO2 prokMSA_id:038251 AJ400955 Methylobacterium sp. TO3 prokMSA_id:035502 AJ400956 Methylobacterium sp. TO4 prokMSA_id:039214 AJ400957 Methylobacterium sp. TO5 prokMSA_id:039790 AJ400958 Methylobacterium sp. TO6 prokMSA_id:023189 AJ400959 Methylobacterium sp. TO7 prokMSA_id:042102 AJ400960 Methylobacterium sp. TO8 prokMSA_id:048908 AJ400961 Methylobacterium sp. YU2 prokMSA_id:023468 AJ400963 Methylobacterium sp. YU11 prokMSA_id:020530 AJ416978 Methylobacterium sp. A1 prokMSA_id:016540 AY038616 clone GL182.19 prokMSA_id:058322 AY140237 Iron-oxidizing acidophile Y005 prokMSA_id:074204 AY145568 Methylobacteriaceae AP-70 prokMSA_id:081189 AY169421 Methylobacterium fujisawaense prokMSA_id:079045 AY177351 Methylobacterium sp. I1 prokMSA_id:087078 AY268275 clone D9 small subunit prokMSA_id:088038 AY268305 clone H1 small subunit prokMSA_id:093826 AY366073 Methylobacterium mesophilicum strain UCM B-3383 prokMSA_id:004806 D32225 Methylobacterium mesophilicum JCM 2829 . prokMSA_id:004800 D32227 Methylobacterium radiotolerans JCM 2831 . prokMSA_id:004798 D32231 Methylobacterium sp. str. F05. prokMSA_id:004795 D32232 Methylobacterium sp. str. F15. prokMSA_id:004790 D32233 Methylobacterium sp. str. F18. prokMSA_id:004796 D32235 Methylobacterium sp. str. F42. prokMSA_id:004801 D32237 Methylobacterium sp. str. F73. prokMSA_id:031817 D87985 Methylobacterium sp. prokMSA_id:045005 D87986 Methylobacterium sp. prokMSA_id:034549 D87987 Methylobacterium sp. prokMSA_id:072487 X99984 sp. clone 1200-64 prokMSA_id:004789 Z23158 Blastobacter sp. str. PC30.39. prokMSA_id:004804 Z23160 Blastobacter sp. str. BF15. 2.28.1.6.11.2.025 OTU 1 seq prokMSA_id:048631 AJ400941 Methylobacterium sp. NI5 2.28.1.6.11.2.026 OTU 1 seq prokMSA_id:049806 AF220762 Methylobacterium nodulans strain ORS1924 2.28.1.6.11.2.027 OTU 1 seq prokMSA_id:060394 AF513446 Rhizobiaceae LA52 2.28.1.6.11.2.028 OTU 1 seq prokMSA_id:064257 AF467694 Rhizobium sp. xct17 2.28.1.6.11.2.029 OTU 2 seqs prokMSA_id:078782 AY177358 Phenanthrene-degrading 35 prokMSA_id:079023 AY177363 Phenanthrene-degrading M10 2.28.1.6.11.2.030 OTU 1 seq prokMSA_id:080574 AY192272 alpha clone P2-12H 2.28.1.6.11.2.031 OTU 1 seq prokMSA_id:087173 AY268307 clone B4 small subunit 2.28.1.6.11.2.032 OTU 1 seq prokMSA_id:087273 AY268294 clone H3 small subunit 2.28.1.6.11.2.033 OTU 1 seq prokMSA_id:087565 AY268300 clone E1 small subunit 2.28.1.6.11.2.034 OTU 1 seq prokMSA_id:087581 AY268338 clone H5 small subunit 2.28.1.6.11.2.035 OTU 1 seq prokMSA_id:089412 AY328673 DSSF51 2.28.1.6.11.2.036 OTU 1 seq prokMSA_id:091425 AY336549 Methylobacterium sp. pfB20 2.28.1.6.11.2.999 poor quality 79 seqs prokMSA_id:028490 AB011702 alpha strain: G24103 prokMSA_id:041670 AB011703 alpha strain: G24116 prokMSA_id:054124 AB025600 Methylobacterium sp. B1 prokMSA_id:023878 AB027529 Methylobacterium sp. B15 prokMSA_id:050963 AB027530 Methylobacterium sp. B13 prokMSA_id:029586 AB027618 Methylobacterium sp. B20 prokMSA_id:045144 AB027619 Methylobacterium sp. B21 prokMSA_id:021613 AB027620 Methylobacterium sp. B22 prokMSA_id:028283 AB027623 Methylobacterium sp. B28 prokMSA_id:030897 AB027624 Methylobacterium sp. B32 prokMSA_id:050054 AB027625 Methylobacterium sp. B33 prokMSA_id:017352 AB054949 Methylobacterium sp. 1172a prokMSA_id:024178 AB054957 Methylobacterium sp. 1722a prokMSA_id:083386 AB097968 Alpha ANRS3-2 prokMSA_id:085123 AB097972 Alpha ANRS4-2 prokMSA_id:084973 AB097974 Alpha ANRS4-4 prokMSA_id:085676 AB106911 Alpha 0-2 prokMSA_id:004792 AF078222 unnamed organism. prokMSA_id:038536 AF083586 Amazonian soil P15 prokMSA_id:051200 AF143755 alpha clone A12 prokMSA_id:021161 AF175662 WJGRT-174 prokMSA_id:021541 AF234071 #0319-6D8 prokMSA_id:042353 AF240137 Grassland soil TSA-11 prokMSA_id:031540 AF316788 Crater Lake CL500-43 prokMSA_id:068901 AF337860 gold mine D5 prokMSA_id:042613 AF357994 clone LO12.3 prokMSA_id:073929 AF364935 clone clL48b prokMSA_id:068107 AF365629 clone BT60PF4BF4 prokMSA_id:047186 AF379021 clone EV6 prokMSA_id:034329 AF379023 clone EV9 prokMSA_id:022719 AF379030 clone EV16 prokMSA_id:022283 AF423207 soil clone 1035-2 prokMSA_id:066658 AF432241 Methylobacterium sp. Ellin413 prokMSA_id:070093 AF432242 Methylobacterium sp. Ellin414 prokMSA_id:061236 AF432663 clone NOS7.151WL prokMSA_id:061209 AF432691 clone SMS9.34WL prokMSA_id:058120 AF498700 Ellin318 prokMSA_id:078591 AF547053 407 prokMSA_id:041695 AJ292831 WR8135 clone WR8135 prokMSA_id:039388 AJ292837 WR8160 clone WR8160 prokMSA_id:028152 AJ292841 WR8173 clone WR8173 prokMSA_id:047361 AJ292848 WR895 clone WR895 prokMSA_id:037580 AJ404512 Methylobacterium MY2 prokMSA_id:064274 AJ491717 Methylobacterium sp. P15 strain P15 prokMSA_id:086782 AJ561139 alpha clone ANT-RB 43 prokMSA_id:094346 AJ582244 alpha clone AC32 prokMSA_id:056283 AY043608 alpha clone NOW2.114WL prokMSA_id:063011 AY122606 clone OSS-45 prokMSA_id:074878 AY150955 alpha clone uvi7 prokMSA_id:076109 AY158811 Methylobacterium sp. Mb14 prokMSA_id:079096 AY186845 alpha clone uvi7 prokMSA_id:084406 AY248705 Methylobacterium sp. Mb 49 prokMSA_id:086974 AY268258 clone F1 small subunit prokMSA_id:087985 AY268293 clone F4 small subunit prokMSA_id:087343 AY268327 clone F2 small subunit prokMSA_id:087135 AY268335 clone D4 small subunit prokMSA_id:087532 AY268336 clone F9 small subunit prokMSA_id:094082 AY357996 Methylobacterium sp. iRII1 prokMSA_id:093740 AY358006 Methylobacterium sp. iRIV2 prokMSA_id:093481 AY358007 Methylobacterium sp. iRIV3 prokMSA_id:093463 AY358014 Methylobacterium sp. iRV3 prokMSA_id:093746 AY358015 Methylobacterium sp. iRV5 prokMSA_id:093260 AY364015 Methylobacterium sp. iEI1 prokMSA_id:093288 AY364016 Methylobacterium sp. iEI6 prokMSA_id:093804 AY364019 Methylobacterium sp. iEII1 prokMSA_id:094016 AY364020 Methylobacterium sp. iEII3 prokMSA_id:094106 AY364025 Methylobacterium sp. iEIII3 prokMSA_id:093163 AY364026 Methylobacterium sp. iEIII4 prokMSA_id:093930 AY364027 Methylobacterium sp. iEIII5 prokMSA_id:094119 AY364032 Methylobacterium sp. iEV1 prokMSA_id:093276 AY364033 Methylobacterium sp. iEV8 prokMSA_id:093176 AY364034 Methylobacterium sp. iEV10 prokMSA_id:093616 AY369236 Methylobacterium sp. iEIV1 prokMSA_id:093449 AY369237 Methylobacterium sp. iEIV4 prokMSA_id:096515 AY394617 Methylobacterium sp. clone N11-18 prokMSA_id:097759 AY394618 Methylobacterium sp. clone N11-16 prokMSA_id:098310 AY394619 Methylobacterium sp. clone N8-3 prokMSA_id:098805 AY394642 Methylobacterium sp. clone N11-17 prokMSA_id:032868 X89904 Methylobacterium sp. PC30.38 strain PC30.38 2.28.1.6.11.3 MLB.ORGANOPHILUM_SUBGROUP 19 seqs 2.28.1.6.11.3.001 OTU 1 seq prokMSA_id:004808 AB024616 Methylobacterium MBIC4305 str. MBIC4305. 2.28.1.6.11.3.002 OTU 4 seqs prokMSA_id:027875 AJ400920 Methylobacterium organophilum strain JCM 2833 prokMSA_id:020440 AJ400921 Methylobacterium sp. CT4 prokMSA_id:074193 BD132012 Human blood prokMSA_id:004807 D32226 Methylobacterium organophilum str. XX JCM 2833 . 2.28.1.6.11.3.003 OTU 1 seq prokMSA_id:085547 AY242688 soil clone Tc129-15 2.28.1.6.11.3.004 OTU 1 seq prokMSA_id:087259 AY268259 clone H1 small subunit 2.28.1.6.11.3.999 poor quality 12 seqs prokMSA_id:049250 AF234057 #0319-2D2 prokMSA_id:074808 AF234152 #0319-7H3 prokMSA_id:043428 AF287024 alpha EC-B5 prokMSA_id:074336 AF364933 clone clL35a prokMSA_id:064584 AF467393 alpha clone 1602 prokMSA_id:072120 AF498712 Ellin330 prokMSA_id:026507 AJ309970 dtb96 prokMSA_id:074940 AY158812 Methylobacterium sp. HSC5 prokMSA_id:086719 AY268262 clone D6 small subunit prokMSA_id:087654 AY268325 clone A8 small subunit prokMSA_id:094256 AY364066 clone cRI28d prokMSA_id:004809 M29028 Methylobacterium organophilum str. XX . 2.28.1.6.11.4 BO.THIOOXIDANS_SUBGROUP 91 seqs 2.28.1.6.11.4.001 OTU 38 seqs prokMSA_id:077818 AB074596 alpha clone:APe4_45 prokMSA_id:048650 AF273081 Bosea mexicana prokMSA_id:029196 AF288300 Alpha 34614 prokMSA_id:025399 AF288302 Alpha 34620 prokMSA_id:027309 AF288305 Alpha 34617 prokMSA_id:024179 AF288306 Alpha 34635 prokMSA_id:027298 AF288307 Alpha 34649 prokMSA_id:047963 AF288308 Alpha 63286 prokMSA_id:047211 AF288309 Alpha 63287 prokMSA_id:068725 AF479379 Glacial ice M3C1.8K-TD7 prokMSA_id:065636 AF507757 soil clone S1140 prokMSA_id:056322 AF508803 Bosea thiooxidans strain BI-42 prokMSA_id:061828 AF529334 alpha clone CLi38 prokMSA_id:069677 AF531764 Bosea sp. 7F prokMSA_id:004820 AJ009482 clone SJA-105. prokMSA_id:004821 AJ224610 str. 5Z2111. prokMSA_id:004822 AJ250796 Bosea thiooxidans str. BI-42 DSM 9653 . prokMSA_id:004823 AJ250797 Bosea thiooxidans str. RpPl5-VS. prokMSA_id:004824 AJ250798 Bosea thiooxidans str. RpPl3-VS. prokMSA_id:004825 AJ250799 Bosea thiooxidans str. MGV6-VS. prokMSA_id:004826 AJ250800 Bosea thiooxidans str. KB13-VS. prokMSA_id:045251 AJ299221 Afipia sp. 2.2 strain 2.2 prokMSA_id:027741 AJ300771 Afipia sp. LMG 19832 strain LMG 19832 prokMSA_id:017030 AJ313022 Bosea sp. MN 51a isolate MN 51a prokMSA_id:058768 AJ508610 Alpha MBRG 4.22 isolate MBRG 4.22 prokMSA_id:058767 AJ508612 Alpha isolate MBRG 4.24 prokMSA_id:039889 AY017049 Alpha A7-2 5'- prokMSA_id:079421 AY187883 clone CC8 prokMSA_id:082152 AY192042 alpha clone G78-GM4R prokMSA_id:082367 AY192066 alpha clone P35-GM4R-t prokMSA_id:004811 U87773 Afipia genosp. 7 str. G8643. prokMSA_id:004812 U87774 Afipia genosp. 8 str. G8569. prokMSA_id:004813 U87775 Afipia genosp. 9 str. G8994. prokMSA_id:004814 U87776 Afipia genosp. 9 str. G8995. prokMSA_id:004815 U87777 Afipia genosp. 9 str. G8989. prokMSA_id:004816 U87778 Afipia genosp. 9 str. G8998. prokMSA_id:004817 U87779 Afipia genosp. 9 str. G8990. prokMSA_id:004818 U87780 Afipia genosp. 9 str. G8993. 2.28.1.6.11.4.002 OTU 1 seq prokMSA_id:004819 AJ009451 clone SJA-9. 2.28.1.6.11.4.003 OTU 2 seqs prokMSA_id:052614 AH010482 prokMSA_id:020698 AY017061 Afipia sp. A8-3 3'- 2.28.1.6.11.4.004 OTU 1 seq prokMSA_id:022304 AJ290000 FukuN57 2.28.1.6.11.4.005 OTU 2 seqs prokMSA_id:040437 AH010477 Alpha A7-2 complete prokMSA_id:023471 AY017050 Alpha A7-2 3'- 2.28.1.6.11.4.006 OTU 1 seq prokMSA_id:056494 AF507871 Bacteroidetes clone ML617.5J-49 2.28.1.6.11.4.007 OTU 1 seq prokMSA_id:066285 AF506054 Afipia sp. LCSAOTU26 2.28.1.6.11.4.008 OTU 1 seq prokMSA_id:066469 AY100621 clone cvf64072 2.28.1.6.11.4.009 OTU 1 seq prokMSA_id:076587 AY159140 MF_clone_40 2.28.1.6.11.4.010 OTU 1 seq prokMSA_id:077260 AY159147 MF_clone_121 2.28.1.6.11.4.011 OTU 1 seq prokMSA_id:077288 AY167839 Chelatococcus asaccharovorans strain SAFR-017 2.28.1.6.11.4.012 OTU 1 seq prokMSA_id:078887 AB098515 Methylobacterium sp. TFB 2.28.1.6.11.4.013 OTU 1 seq prokMSA_id:080978 AB094938 clone:OHKB11.19 2.28.1.6.11.4.014 OTU 1 seq prokMSA_id:081153 AY192055 gamma clone P65-GM4R-t 2.28.1.6.11.4.015 OTU 1 seq prokMSA_id:081236 AY192037 beta clone G45-GM4R 2.28.1.6.11.4.999 poor quality 37 seqs prokMSA_id:004827 AF068118 str. MG1. prokMSA_id:044158 AF078384 Grassland soil clone sl2_524 prokMSA_id:034937 AF226194 maize root Zmrc10 prokMSA_id:033617 AF226255 maize root Zmrc40 prokMSA_id:046801 AF297701 Afipia genosp. 7 prokMSA_id:051695 AF332337 clone C26-26 prokMSA_id:022629 AF352563 Bradyrhizobium sp. SjSa1 prokMSA_id:029582 AF428940 clone CR98-35-58 prokMSA_id:030910 AF450007 Bradyrhizobium group clone GW60-13-11 prokMSA_id:068714 AF484050 clone p59 prokMSA_id:067445 AF493296 clone pHS31 prokMSA_id:036935 AJ000919 sp. isolate K13 prokMSA_id:050602 AJ299574 Afipia sp. CZ64 isolate CZ64 prokMSA_id:049933 AJ309919 Bosea thiooxidans strain dtb79 prokMSA_id:045867 AJ315686 Alpha ML10 strain ML10 prokMSA_id:087633 AJ561128 alpha clone ANT-RB 51 prokMSA_id:034408 AY017060 Afipia sp. A8-3 5'- prokMSA_id:020570 AY039384 Soil S84D2 prokMSA_id:066622 AY094498 alpha clone 8-2 prokMSA_id:056191 AY095834 alpha ARCT2-22 prokMSA_id:065014 AY095841 alpha ARCT2-44 prokMSA_id:085622 AY099287 Bradyrhizobium sp. Vcas108 prokMSA_id:069755 AY143782 Bosea sp. clone Pr54 prokMSA_id:075005 AY159161 MF_isolate_18 prokMSA_id:076292 AY159163 MF_isolate_26 prokMSA_id:079926 AY190142 Alpha G4 prokMSA_id:080485 AY193036 clone FSA3 prokMSA_id:079626 AY193039 clone FSA7 prokMSA_id:083870 AY217458 Alpha WCIP14 prokMSA_id:085656 AY253427 clone AC2 prokMSA_id:097278 AY391632 soil clone M16 prokMSA_id:026506 U45666 activated sludge AI138 prokMSA_id:049847 U45668 activated sludge AI171 prokMSA_id:047796 U45672 activated sludge AI271 prokMSA_id:027028 U45690 activated sludge AI085 prokMSA_id:004810 X81044 Bosea thiooxidans str. BI-42 DSM 9653 . prokMSA_id:004828 X91275 clone G23. 2.28.1.6.12 BRADYRHIZOBIUM_SUBGROUP 908 seqs 2.28.1.6.12.1 AFIPIA.FELIS_SUBGROUP 16 seqs 2.28.1.6.12.1.001 OTU 9 seqs prokMSA_id:004830 AB021393 DSM 1083. prokMSA_id:004831 AF003937 Afipia felis str. AfTA-1 CDC G9192. prokMSA_id:018562 AF288310 Afipia felis prokMSA_id:068815 AF338177 Afipia felis ; tRNA-Ile and tRNA-Ala genes complete ; and 23S complete prokMSA_id:066818 AF374383 Alpha 76713 prokMSA_id:062848 AF454662 Nb_LWCE-4 prokMSA_id:087984 AF514773 Afipia felis prokMSA_id:016718 AJ318118 alpha clone BIfci45 prokMSA_id:004829 M65248 Afipia felis. 2.28.1.6.12.1.002 OTU 1 seq prokMSA_id:033444 AF256044 alpha GT20-1a 2.28.1.6.12.1.003 OTU 1 seq prokMSA_id:081038 AF484604 Rhizobium sp. PL10a 2.28.1.6.12.1.999 poor quality 5 seqs prokMSA_id:018732 AJ295537 rape rhizosphere wr0097 prokMSA_id:076147 AJ428140 isolate band mw-b4 prokMSA_id:098844 AY394614 Afipia sp. clone N9-19 prokMSA_id:029850 U45677 activated sludge AI313 prokMSA_id:029063 U45691 activated sludge AI051 2.28.1.6.12.2 AFP.CLEVELANDENSIS 2 seqs 2.28.1.6.12.2.001 OTU 1 seq prokMSA_id:004832 M69186 Afipia clevelandensis. 2.28.1.6.12.2.999 poor quality 1 seq prokMSA_id:043250 AF165277 Pasture soil clone HPS-49 2.28.1.6.12.3 ENVIRONMENTAL_CLONE_SMK196 1 seq 2.28.1.6.12.3.999 poor quality 1 seq prokMSA_id:004833 X78635 clone SMK196. 2.28.1.6.12.4 NTB.WINOGRADSKYI_SUBGROUP 33 seqs 2.28.1.6.12.4.001 OTU 16 seqs prokMSA_id:073775 AF069957 Nitrobacter alkalicus strain AN2 prokMSA_id:004835 AF080257 Nitrobacter TH21 str. TH21. prokMSA_id:025031 AF096836 Nitrobacter sp. Nb4 prokMSA_id:073880 AF257076 Nitrobacter sp. prokMSA_id:041012 AF308874 Arsenic resistant soil 7-02 prokMSA_id:028205 AF363288 Nitrobacter winogradskyi prokMSA_id:062849 AF454660 Nb_LWCT-1 prokMSA_id:025095 AY055795 Nitrobacter sp. PJN1 prokMSA_id:017737 AY055796 Nitrobacter winogradskyi prokMSA_id:047296 AY055797 Nitrobacter sp. NRB5220 prokMSA_id:082436 AY135357 Nitrite-oxidizing MPN2 prokMSA_id:004840 L11661 Nitrobacter winogradskyi str. W. prokMSA_id:004842 L11662 Nitrobacter sp. str. LL. prokMSA_id:004843 L11663 Nitrobacter hamburgensis str. X14. prokMSA_id:004844 L35502 Nitrobacter hamburgensis str. Nb14? or X14 . prokMSA_id:004834 L35506 Nitrobacter winogradskyi ATCC 25381 . 2.28.1.6.12.4.002 OTU 1 seq prokMSA_id:029702 AY055794 Nitrobacter sp. KB215 2.28.1.6.12.4.003 OTU 1 seq prokMSA_id:056503 AY055798 Nitrobacter sp. KB212 2.28.1.6.12.4.004 OTU 1 seq prokMSA_id:073774 AF506055 Afipia sp. LCSAOTU25 2.28.1.6.12.4.999 poor quality 14 seqs prokMSA_id:066640 AF432257 Ellin435 prokMSA_id:051113 AJ437438 clone 1_34_218 prokMSA_id:069268 AY144204 alpha clone LTUA06356 prokMSA_id:090737 AY289426 soil clone ABS-366 prokMSA_id:093851 AY364057 alpha clone cRI4a prokMSA_id:004839 L35507 Nitrobacter winogradskyi ATCC 14123. prokMSA_id:004841 L35511 Nitrobacter sp. str. R6. prokMSA_id:004846 L35512 Nitrobacter sp. ATCC 25385. prokMSA_id:004836 L35513 Nitrobacter sp. ATCC 25384. prokMSA_id:004837 L35514 Nitrobacter sp. ATCC 25383. prokMSA_id:004845 U05772 Rhodopseudomonas sp. str. WCU-G13. prokMSA_id:004848 U27817 clone pCON11. prokMSA_id:004838 X65572 clone MC 2. prokMSA_id:004847 X65574 clone MC 7. 2.28.1.6.12.5 RPS.PALUSTRIS_SUBGROUP 61 seqs 2.28.1.6.12.5.005 OTU 48 seqs prokMSA_id:004856 AB017261 Rhodopseudomonas palustris str. F7-1. prokMSA_id:028497 AB027692 Rhodopseudomonas sp. B29 prokMSA_id:021255 AB033756 Rhodopseudomonas palustris prokMSA_id:035097 AB074667 Alpha D-C2-17A prokMSA_id:062340 AB079634 Rhodopseudomonas palustris isolate:VA2-2 prokMSA_id:062337 AB079678 Rhodopseudomonas sp. HMD88 prokMSA_id:062333 AB079679 Rhodopseudomonas sp. HMD89 prokMSA_id:063890 AB087719 Rhodopseudomonas rhenobacensis complete prokMSA_id:004855 AF095928 Rhodopseudomonas v-1 str. v-1. prokMSA_id:004857 AF123085 Rhodopseudomonas sp. g-c prokMSA_id:004858 AF123086 Rhodopseudomonas g-c str. g-c. prokMSA_id:004864 AF123087 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001 . prokMSA_id:004861 AF184625 Rhodopseudomonas palustris str. No.7. prokMSA_id:004862 AF184626 Rhodopseudomonas palustris str. No.7. prokMSA_id:047905 AF314062 Rhodopseudomonas palustris strain AP1 prokMSA_id:019194 AF314063 Rhodopseudomonas palustris strain KD1 prokMSA_id:023531 AF314064 Rhodopseudomonas palustris strain BIS10 prokMSA_id:047153 AF416653 Rhodopseudomonas palustris strain BIS3 prokMSA_id:037581 AF416654 Rhodopseudomonas palustris strain BIS6 prokMSA_id:042770 AF416655 Rhodopseudomonas palustris strain BIS11 prokMSA_id:027068 AF416656 Rhodopseudomonas palustris strain BIS14 prokMSA_id:023170 AF416657 Rhodopseudomonas palustris strain BIS17 prokMSA_id:041344 AF416658 Rhodopseudomonas palustris strain BIS18 prokMSA_id:025224 AF416659 Rhodopseudomonas palustris strain BIS23 prokMSA_id:052084 AF416660 Rhodopseudomonas palustris strain WS17 prokMSA_id:027251 AF416661 Rhodopseudomonas palustris strain NCIB8288 prokMSA_id:049151 AF416662 Rhodopseudomonas palustris strain NCIMB8252 prokMSA_id:042172 AF416663 Rhodopseudomonas palustris strain DCP3 prokMSA_id:020784 AF417956 Alpha BiesA53 prokMSA_id:062851 AF454651 Nb_R1-2 prokMSA_id:068786 AF487428 Rhodopseudomonas palustris strain Wai1S1 prokMSA_id:068784 AF487429 Rhodopseudomonas palustris strain OH3F2 prokMSA_id:068785 AF487431 Rhodopseudomonas palustris strain Wai1val1 prokMSA_id:068783 AF487432 Rhodopseudomonas palustris strain TKT2 prokMSA_id:062406 AF529115 alpha clone FTLM116 prokMSA_id:081228 AJ548925 Rhodopseudomonas sp. clone BIOEST-36 prokMSA_id:076885 AY159204 RO_isolate_3 prokMSA_id:004865 D12700 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001 . prokMSA_id:004851 D25312 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001 . prokMSA_id:004859 D84187 Rhodopseudomonas palustris. prokMSA_id:004863 D89811 Rhodopseudomonas palustris str. No.7. prokMSA_id:004866 L11664 Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001 . prokMSA_id:004850 M59068 Rhodopseudomonas palustris str. GH. prokMSA_id:004860 U87766 Afipia genosp. 3 str. G5357. prokMSA_id:004867 U87770 Afipia genosp. 4 str. G7812. prokMSA_id:004852 U87771 Afipia genosp. 5 str. F8014. prokMSA_id:004854 X87279 Rhodopseudomonas palustris. prokMSA_id:004849 X89815 Rhodopseudomonas palustris. 2.28.1.6.12.5.006 OTU 1 seq prokMSA_id:047708 AJ318194 alpha clone BIvi26 2.28.1.6.12.5.007 OTU 1 seq prokMSA_id:075417 AY159176 RO_clone_27B 2.28.1.6.12.5.999 poor quality 11 seqs prokMSA_id:083760 AB107136 Alpha K-2031 parital prokMSA_id:086247 AB107139 Alpha K-2033 parital prokMSA_id:084546 AB107150 Alpha K-2051 parital prokMSA_id:046795 AF078203 Grassland soil clone saf1_207 prokMSA_id:027056 AF256046 alpha GT16-3b prokMSA_id:040402 AF256054 alpha GT20-1b prokMSA_id:068782 AF487430 Rhodopseudomonas palustris strain OK4bTR3 prokMSA_id:046979 AJ132401 Rhodopseudomonas rhenobacensis clone 1 prokMSA_id:024890 AJ289108 Rhodopseudomonas sp. n1 prokMSA_id:004868 D14435 Rhodopseudomonas palustris str. R-1. prokMSA_id:004853 M55496 Rhodopseudomonas palustris str. 2.1.6. 2.28.1.6.12.6 ENVIRONMENTAL_CLONE_JAP850_SUBGROUP 18 seqs 2.28.1.6.12.6.001 OTU 1 seq prokMSA_id:004878 U09829 clone JAP850. 2.28.1.6.12.6.999 poor quality 17 seqs prokMSA_id:059952 AF509894 Bradyrhizobium sp. KKI16 prokMSA_id:059953 AF509895 Bradyrhizobium sp. KKI20 prokMSA_id:059951 AF509896 Bradyrhizobium sp. KKI21 prokMSA_id:059949 AF509898 Bradyrhizobium sp. CMI1 prokMSA_id:059948 AF509899 Bradyrhizobium sp. CMI11 prokMSA_id:059947 AF509900 Bradyrhizobium sp. CMI17 prokMSA_id:059950 AF509902 Bradyrhizobium sp. CMU3 prokMSA_id:065177 AY095584 alpha pV-14 prokMSA_id:004873 U07035 clone JAP702. prokMSA_id:004877 U09573 clone JAP603. prokMSA_id:004871 U09575 clone JAP601. prokMSA_id:004874 U13155 clone PLY10. prokMSA_id:004875 U13156 clone PLY14. prokMSA_id:004869 U13161 clone POR14. prokMSA_id:004876 U13162 clone POR18. prokMSA_id:004870 U13163 clone POR22. prokMSA_id:004872 U13164 clone POR47. 2.28.1.6.12.7 ENVIRONMENTAL_CLONE_MC6 1 seq 2.28.1.6.12.7.999 poor quality 1 seq prokMSA_id:004879 X65573 clone MC 6. 2.28.1.6.12.8 BDR.LUPINI_SUBGROUP 198 seqs 2.28.1.6.12.8.001 OTU 121 seqs prokMSA_id:026267 AB029402 Bradyrhizobium liaoningense prokMSA_id:041492 AB064673 clone:NK191 prokMSA_id:027411 AB070563 Bradyrhizobium japonicum strain:NA6059 prokMSA_id:016905 AB070564 Bradyrhizobium japonicum strain:NA6062 prokMSA_id:047535 AB070565 Bradyrhizobium japonicum strain:NA6090 prokMSA_id:041718 AB070566 Bradyrhizobium japonicum strain:YCK295 prokMSA_id:021490 AB070570 Bradyrhizobium japonicum strain:NA6545 prokMSA_id:023776 AB070571 Bradyrhizobium japonicum strain:USDA135 prokMSA_id:067710 AB072412 Bradyrhizobium japonicum isolate:NA6043 prokMSA_id:067711 AB072413 Bradyrhizobium japonicum isolate:NA6250 prokMSA_id:067705 AB072414 Bradyrhizobium japonicum isolate:NA6251 prokMSA_id:073043 AB079680 Rhodopseudomonas palustris isolate:99D prokMSA_id:062331 AB079683 Bradyrhizobium sp. MAFF 210318 prokMSA_id:077914 AB099659 Oligotropha carboxidovorans complete strain: S23 prokMSA_id:078336 AB099660 Oligotropha carboxidovorans complete strain: S28 prokMSA_id:097052 AB122068 Bradyrhizobium japonicum prokMSA_id:004933 AF178434 Bradyrhizobium ApB16 str. ApB16. prokMSA_id:069144 AF208504 Bradyrhizobium japonicum strain USDA 123 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:070284 AF208508 Bradyrhizobium japonicum strain USDA 127 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:069704 AF208511 Bradyrhizobium japonicum strain USDA 135 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:070036 AF208513 Bradyrhizobium liaoningense strain 2281 USDA 3622 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:069453 AF208514 Bradyrhizobium japonicum strain USDA 38 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:069075 AF208515 Bradyrhizobium japonicum strain USDA 4 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:050671 AF222751 Bradyrhizobium sp. WM9 prokMSA_id:036732 AF234888 Bradyrhizobium japonicum strain SEMIA 5079 complete prokMSA_id:045460 AF236086 Bradyrhizobium japonicum strain SEMIA 566 complete prokMSA_id:036971 AF239842 Bradyrhizobium japonicum PRY1 complete prokMSA_id:032699 AF239843 Bradyrhizobium japonicum PRY40 complete prokMSA_id:051967 AF239844 Bradyrhizobium japonicum PRY42 complete prokMSA_id:043451 AF286361 Bradyrhizobium japonicum prokMSA_id:068821 AF293377 Bradyrhizobium japonicum strain USDA 32 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:056218 AF293378 Bradyrhizobium japonicum strain USDA 59 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:021071 AF345540 Rhizobium sp. Bo71 prokMSA_id:044913 AF362943 Bradyrhizobium japonicum prokMSA_id:029213 AF363113 Bradyrhizobium japonicum strain MSDJ 5605 prokMSA_id:040377 AF363114 Bradyrhizobium japonicum strain MSDJ 5611 prokMSA_id:042291 AF363115 Bradyrhizobium japonicum strain MSDJ 5563 prokMSA_id:023425 AF363117 Bradyrhizobium sp. MSDJ 2024 prokMSA_id:021129 AF363118 Bradyrhizobium sp. MSDJ 2047 prokMSA_id:036027 AF363119 Bradyrhizobium japonicum strain MSDJ 5622 prokMSA_id:029036 AF363120 Bradyrhizobium japonicum strain MSDJ 5586 prokMSA_id:019473 AF363121 Bradyrhizobium japonicum strain MSDJ 5584 prokMSA_id:020975 AF363124 Bradyrhizobium japonicum strain MSDJ 5582 prokMSA_id:030965 AF363125 Bradyrhizobium japonicum strain MSDJ 5569 prokMSA_id:044300 AF363126 Bradyrhizobium japonicum strain MSDJ 5570 prokMSA_id:031104 AF363128 Bradyrhizobium japonicum strain MSDJ 5327 prokMSA_id:019767 AF363129 Bradyrhizobium japonicum strain MSDJ 5317 prokMSA_id:035319 AF363130 Bradyrhizobium japonicum strain MSDJ 5344 prokMSA_id:034952 AF363131 Bradyrhizobium liaoningense strain 2043 prokMSA_id:048441 AF363132 Bradyrhizobium liaoningense strain 2281 prokMSA_id:037117 AF363133 Bradyrhizobium japonicum strain MSDJ 5718 prokMSA_id:016891 AF363134 Bradyrhizobium japonicum strain MSDJ 5692 prokMSA_id:018027 AF363135 Bradyrhizobium japonicum strain MSDJ 5697 prokMSA_id:039358 AF363136 Bradyrhizobium sp. MSDJ G17 prokMSA_id:024680 AF363138 Bradyrhizobium japonicum strain MSDJ G94 prokMSA_id:044859 AF363139 Bradyrhizobium sp. MSDJ 2027 prokMSA_id:020645 AF363140 Bradyrhizobium sp. MSDJ 2009 prokMSA_id:050192 AF363141 Bradyrhizobium sp. MSDJ 5727 prokMSA_id:037374 AF363143 Bradyrhizobium sp. MSDJ 5494 prokMSA_id:051333 AF363144 Bradyrhizobium sp. MSDJ 5495 prokMSA_id:021631 AF363145 Bradyrhizobium sp. MSDJ 5493 prokMSA_id:046384 AF363146 Bradyrhizobium sp. MSDJ 5729 prokMSA_id:034211 AF363147 Bradyrhizobium sp. MSDJ 5730 prokMSA_id:030589 AF363149 Bradyrhizobium sp. MSDJ 5726 prokMSA_id:037915 AF363151 Bradyrhizobium japonicum strain USDA 123 prokMSA_id:047540 AF384138 Bradyrhizobium sp. Ppau3-25 prokMSA_id:054256 AF417541 Bradyrhizobium japonicum strain DASA02007 prokMSA_id:023765 AF417542 Bradyrhizobium japonicum strain DASA02010 prokMSA_id:071773 AF417543 Bradyrhizobium japonicum strain DASA12006 prokMSA_id:049277 AF417545 Bradyrhizobium japonicum strain THA7 prokMSA_id:045495 AF417548 Bradyrhizobium japonicum strain DASA03183 prokMSA_id:020737 AF417549 Bradyrhizobium japonicum strain DASA24015 prokMSA_id:048037 AF417550 Bradyrhizobium japonicum strain DASA01059 prokMSA_id:032240 AF445120 clone Tc59 prokMSA_id:052862 AF461191 Bradyrhizobium sp. Spain-1 prokMSA_id:081881 AF484622 Bradyrhizobium sp. 46c2 prokMSA_id:068703 AF485365 Bradyrhizobium sp. LMTR 28 prokMSA_id:087391 AF510579 Bradyrhizobium sp. Glm-5 prokMSA_id:087089 AF510580 Bradyrhizobium sp. Glm-6 prokMSA_id:087123 AF510620 Bradyrhizobium sp. vgs-9 prokMSA_id:065320 AF514702 Bradyrhizobium sp. La5-8 prokMSA_id:081286 AF514794 Bradyrhizobium sp. ORS199 prokMSA_id:089027 AF523035 Bradyrhizobium sp. prokMSA_id:062985 AF526923 Bradyrhizobium sp. clone T8-12 rrn prokMSA_id:056253 AF530466 Bradyrhizobium japonicum isolate WC4 prokMSA_id:061022 AF530467 Bradyrhizobium japonicum isolate SD5 prokMSA_id:061020 AF530468 Bradyrhizobium japonicum isolate HA1 prokMSA_id:004924 AJ132568 Bradyrhizobium sp. str. Hambi 2125. prokMSA_id:004925 AJ132569 Bradyrhizobium sp. str. Spr 2-8. prokMSA_id:004926 AJ132570 Bradyrhizobium sp. str. Hambi 2152. prokMSA_id:004927 AJ132571 Bradyrhizobium sp. str. Spr 4-5. prokMSA_id:004928 AJ132572 Bradyrhizobium sp. str. 283A. prokMSA_id:020855 AJ250813 Bradyrhizobium liaoningense strain LMG 18230 prokMSA_id:075003 AJ534616 alpha clone JG36-TzT-123 prokMSA_id:078897 AJ536879 clone JG30-KF-AS89 prokMSA_id:097512 AJ558024 Bradyrhizobium sp. BGA-1 strain BGA-1 prokMSA_id:095711 AJ558025 Bradyrhizobium sp. BTA-1 strain BTA-1 prokMSA_id:095660 AJ558026 Bradyrhizobium sp. UPM861 strain UPM861 prokMSA_id:098094 AJ558027 Bradyrhizobium sp. ISLU256 strain ISLU256 prokMSA_id:098462 AJ558029 Bradyrhizobium sp. ISLU65 strain ISLU65 prokMSA_id:095182 AJ558032 Bradyrhizobium sp. ISLU227 strain ISLU227 prokMSA_id:035376 AY050540 Bradyrhizobium japonicum strain MSDJ 5565 prokMSA_id:067647 AY084079 Rhodopseudomonas palustris prokMSA_id:063555 AY117677 Bradyrhizobium japonicum strain SEMIA 5085 complete prokMSA_id:059135 AY148432 Rhizobium sp. BA1 prokMSA_id:075450 AY166855 clone DCE47 prokMSA_id:086363 AY242667 soil clone Tc129-13 prokMSA_id:004885 D12781 Bradyrhizobium japonicum IAM 12608. prokMSA_id:004897 S46916 Bradyrhizobium japonicum LMG 6138 . prokMSA_id:004932 U69636 Bradyrhizobium lupini str. FN 13 USDA 3505. prokMSA_id:004921 U69637 Bradyrhizobium lupini str. KM50 90 USDA 3514. prokMSA_id:004900 U69638 Bradyrhizobium japonicum str. 3I1b6 SEMIA 5052 RCR 3425 USDA 6. prokMSA_id:073041 U69638 Bradyrhizobium japonicum ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:004913 U87767 Afipia genosp. 4 str. G6050. prokMSA_id:004914 U87768 Afipia genosp. 4 str. G3644. prokMSA_id:004915 U87769 Afipia genosp. 4 str. G9018. prokMSA_id:004936 X66024 Bradyrhizobium japonicum LMG 6138 . prokMSA_id:004880 X87273 Bradyrhizobium lupini. prokMSA_id:004929 Z94804 Bradyrhizobium genosp. G str. BDV5680. prokMSA_id:004930 Z94814 Bradyrhizobium genosp. E str. BDV5810. prokMSA_id:004931 Z94816 Bradyrhizobium genosp. H str. BDV5329. 2.28.1.6.12.8.002 OTU 8 seqs prokMSA_id:004920 AF001638 clone OCS126. prokMSA_id:032937 AF245641 alpha NAC11-16 prokMSA_id:079431 AF382141 clone ZA3446c prokMSA_id:041962 AJ400342 marine ZD0209 prokMSA_id:068992 AY033298 alpha MB11B03 ; tRNA-Ile complete ; and 23S prokMSA_id:093117 AY354816 alpha clone PLY-P1-97 prokMSA_id:072433 Z88583 isolate HRV6 prokMSA_id:030120 Z88591 isolate HRV39 2.28.1.6.12.8.003 OTU 1 seq prokMSA_id:024441 AJ318107 alpha clone BIaii16 2.28.1.6.12.8.004 OTU 1 seq prokMSA_id:032002 AF417544 Bradyrhizobium japonicum strain DASA12007 2.28.1.6.12.8.005 OTU 1 seq prokMSA_id:039678 AF288303 Alpha 34626 2.28.1.6.12.8.006 OTU 1 seq prokMSA_id:060820 AF516748 Umezakia natans strain TAC101 2.28.1.6.12.8.007 OTU 1 seq prokMSA_id:062972 AF526939 Bradyrhizobium sp. clone 81-24 rrn 2.28.1.6.12.8.008 OTU 1 seq prokMSA_id:088480 AY315167 Glacier FXI3 2.28.1.6.12.8.999 poor quality 63 seqs prokMSA_id:019280 AB069657 Bradyrhizobium sp. PAC29 prokMSA_id:004916 AF000553 Bradyrhizobium BC-P6 str. BC-P6. prokMSA_id:004917 AF000554 Bradyrhizobium BC-P7 str. BC-P7. prokMSA_id:004918 AF000556 Bradyrhizobium BGA-1 str. BGA-1. prokMSA_id:004919 AF000557 Bradyrhizobium BRE-1 str. BRE-1. prokMSA_id:004911 AF000627 Bradyrhizobium lupini str. COO193. prokMSA_id:004912 AF000628 Bradyrhizobium lupini str. WA21. prokMSA_id:023903 AF016753 soil clone S-42 prokMSA_id:039446 AF114628 alpha SUR-FREE-19 prokMSA_id:036444 AF114650 alpha SUR-FREE-19 prokMSA_id:018231 AF114652 alpha SUR-FREE-21 prokMSA_id:004922 AF146827 Bradyrhizobium DesT10 str. DesT10. prokMSA_id:020697 AF146828 Bradyrhizobium sp. ApB16 prokMSA_id:024322 AF256047 alpha GT19-2b prokMSA_id:019845 AF287020 alpha EC-I63 prokMSA_id:060678 AF406325 alpha clone AEGEAN_122_27F prokMSA_id:066644 AF432254 Ellin431 prokMSA_id:031700 AF461193 Bradyrhizobium sp. Spain-3 prokMSA_id:033447 AF461196 Bradyrhizobium sp. Spain-6 prokMSA_id:068711 AF484052 clone t69 prokMSA_id:058115 AF498704 Ellin322 prokMSA_id:041886 AH004946 marine 5' prokMSA_id:004935 AJ003241 Bradyrhizobium KFR10 str. KFR10. prokMSA_id:022646 AJ233472 clone WR110 prokMSA_id:004923 AJ233487 clone WR178. prokMSA_id:019511 AJ292808 WR825 clone WR825 prokMSA_id:020819 AJ292843 WR876 clone WR876 prokMSA_id:041081 AY038391 clone CD3B11 prokMSA_id:031960 AY038465 alpha clone CD2F1 prokMSA_id:053853 AY038568 alpha clone CD2B9 prokMSA_id:063498 AY117676 Bradyrhizobium japonicum strain SEMIA 5039 prokMSA_id:077573 AY138997 gamma pBC16S3-99 prokMSA_id:076370 AY154537 earthworm intestine clone lw15 prokMSA_id:085166 AY253441 clone HC8 prokMSA_id:004901 D85400 Bradyrhizobium TARC 113 str. TARC 113. prokMSA_id:004902 D85401 Bradyrhizobium TARC 124 str. TARC 124. prokMSA_id:004903 D85402 Bradyrhizobium TARC 156 str. TARC 156. prokMSA_id:004904 D85403 Bradyrhizobium TARC 38 str. TARC 38. prokMSA_id:004905 D85404 Bradyrhizobium TARC 64 str. TARC 64. prokMSA_id:004906 D85405 Bradyrhizobium TARC 84 str. TARC 84. prokMSA_id:004907 D85406 Bradyrhizobium TARC 86 str. TARC 86. prokMSA_id:004908 D85407 Bradyrhizobium japonicum USDA 115. prokMSA_id:004909 D85410 Bradyrhizobium japonicum USDA 129. prokMSA_id:004910 D85412 Bradyrhizobium japonicum str. 3I1b6 SEMIA 5052 RCR 3425 USDA 6. prokMSA_id:004883 L41523 Bradyrhizobium sp. str. NC6. prokMSA_id:004888 L41524 Bradyrhizobium sp. str. NC6. prokMSA_id:004898 L41525 Bradyrhizobium sp. str. T-1. prokMSA_id:004887 L41530 Bradyrhizobium japonicum str. 3I1b6 SEMIA 5052 RCR 3425 ATCC prokMSA_id:004881 M55489 Bradyrhizobium japonicum USDA 59. prokMSA_id:004886 U04717 Bradyrhizobium sp. IRBG 309. prokMSA_id:004895 U12888 Bradyrhizobium sp. str. MAR 253; Madison 625. prokMSA_id:004893 U12900 Bradyrhizobium sp. str. MAR 1445; TAL 1775; NC 92. prokMSA_id:004892 U12903 Bradyrhizobium sp. str. MAR 1555; TAL 11. prokMSA_id:004896 U12904 Bradyrhizobium sp. str. MAR 1574; TAL 1276. prokMSA_id:004894 U12906 Bradyrhizobium sp. str. MAR 1586. prokMSA_id:004899 U12907 Bradyrhizobium sp. str. MAR 1587. prokMSA_id:004890 U12908 Bradyrhizobium sp. str. MAR 1589; NC 83.2; IC 7015. prokMSA_id:004891 U12909 Bradyrhizobium sp. str. MAR 1600; Z 55. prokMSA_id:004882 U12910 Bradyrhizobium sp. str. MAR 1605; Z 105. prokMSA_id:030498 U70692 alpha OM299 prokMSA_id:004934 U81749 clone vadinHB08. prokMSA_id:004884 X65578 clone MC 23. prokMSA_id:004889 X84552 str. SBR2007. 2.28.1.6.12.9 BDR.JAPONICUS_SUBGROUP 36 seqs 2.28.1.6.12.9.001 OTU 1 seq prokMSA_id:004940 X97080 str. TM28. 2.28.1.6.12.9.002 OTU 9 seqs prokMSA_id:033185 AF417547 Bradyrhizobium japonicum strain DASA38025 prokMSA_id:081234 AF484616 Bradyrhizobium sp. 33b prokMSA_id:081923 AF514798 Bradyrhizobium sp. ORS206 prokMSA_id:061023 AF530465 Bradyrhizobium japonicum isolate JZ1 prokMSA_id:064291 AY039015 Bradyrhizobium sp. ORS 3259 prokMSA_id:004938 D11345 Bradyrhizobium japonicum IAM 12608. prokMSA_id:004937 D13430 Bradyrhizobium japonicum str. MAR 1491 USDA 110. prokMSA_id:004939 D14507 Bradyrhizobium sp. str. 55S. prokMSA_id:004941 D14508 Bradyrhizobium sp. str. 129. 2.28.1.6.12.9.003 OTU 1 seq prokMSA_id:045827 AF417551 Bradyrhizobium japonicum strain DASA37026 2.28.1.6.12.9.004 OTU 1 seq prokMSA_id:067260 AF495428 clone F13.32 2.28.1.6.12.9.999 poor quality 24 seqs prokMSA_id:042466 AB054947 Bradyrhizobium sp. 1253 prokMSA_id:046563 AF078187 Grassland soil clone saf1_115 prokMSA_id:034432 AF078219 Grassland soil clone saf1_316 prokMSA_id:048472 AF078449 Grassland soil clone sl3_820 prokMSA_id:030504 AF226219 maize root Zmrc185 prokMSA_id:046060 AF392625 clone CRB3 prokMSA_id:066642 AF432253 Ellin429 prokMSA_id:071829 AF436812 Bradyrhizobium sp. STM1462 prokMSA_id:055869 AF436813 Bradyrhizobium sp. STM1463 prokMSA_id:071840 AF436814 Bradyrhizobium sp. STM1464 prokMSA_id:073557 AF436815 Bradyrhizobium sp. STM1465 prokMSA_id:069167 AF436816 Bradyrhizobium sp. STM1466 prokMSA_id:072579 AF436817 Bradyrhizobium sp. STM1467 prokMSA_id:056099 AF436818 Bradyrhizobium sp. STM1468 prokMSA_id:069446 AF436819 Bradyrhizobium sp. STM1469 prokMSA_id:069231 AF436820 Bradyrhizobium sp. STM1470 prokMSA_id:069802 AF436821 Bradyrhizobium sp. STM1471 prokMSA_id:023927 AJ295491 rape rhizosphere wr0033 prokMSA_id:047230 AJ295494 rape rhizosphere wr0036 prokMSA_id:031127 AJ295521 rape rhizosphere wr0077 prokMSA_id:018040 AJ295538 rape rhizosphere wr0098 prokMSA_id:027583 AJ295550 rape rhizosphere wr0111 prokMSA_id:089965 AY289430 soil clone DS-14 prokMSA_id:096401 AY395099 clone B05R 2.28.1.6.12.10 BDR.ELKANII_SUBGROUP 330 seqs 2.28.1.6.12.10.006 OTU 1 seq prokMSA_id:004968 AF013541 unnamed organism. 2.28.1.6.12.10.007 OTU 4 seqs prokMSA_id:004962 U87762 Afipia genosp. 1 str. G6457. prokMSA_id:004963 U87763 Afipia genosp. 1 str. F872. prokMSA_id:004964 U87764 Afipia genosp. 2 str. G8965. prokMSA_id:004965 U87765 Afipia genosp. 2 str. G4438. 2.28.1.6.12.10.008 OTU 1 seq prokMSA_id:045478 AF229858 Bradyrhizobium sp. 2FB3 2.28.1.6.12.10.009 OTU 1 seq prokMSA_id:049111 AY037671 earthworm cast clone C013 2.28.1.6.12.10.010 OTU 1 seq prokMSA_id:065458 AY102327 clone a13131 2.28.1.6.12.10.011 OTU 1 seq prokMSA_id:065460 AY102325 clone a13127 2.28.1.6.12.10.012 OTU 1 seq prokMSA_id:074903 AY159206 RO_isolate_7 2.28.1.6.12.10.013 OTU 1 seq prokMSA_id:075861 AY150881 alpha clone glen99_6 2.28.1.6.12.10.014 OTU 1 seq prokMSA_id:076070 AY159175 RO_clone_22 2.28.1.6.12.10.018 OTU 181 seqs prokMSA_id:048285 AB035489 Alpha RD5-C2 prokMSA_id:036853 AB035490 Alpha 12A prokMSA_id:049293 AB067729 Bradyrhizobium YB2 prokMSA_id:017685 AB070561 Bradyrhizobium elkanii strain:NA6167 prokMSA_id:067700 AB072421 Bradyrhizobium elkanii isolate:NA6377 prokMSA_id:067701 AB072422 Bradyrhizobium elkanii isolate:NA6265 prokMSA_id:056585 AB072423 Bradyrhizobium elkanii isolate:NA6605 prokMSA_id:058511 AB072714 clone:pHAuB-27 prokMSA_id:077716 AB074595 alpha clone:APe4_80 prokMSA_id:055508 AB079725 Bradyrhizobium sp. DASA 35082 prokMSA_id:086768 AB110484 Bradyrhizobium elkanii prokMSA_id:004969 AF013559 unnamed organism. prokMSA_id:004956 AF178435 Bradyrhizobium DesT1 str. DesT1. prokMSA_id:004955 AF178436 Bradyrhizobium DesB1 str. DesB1. prokMSA_id:004954 AF178437 Bradyrhizobium jwc91-2 str. jwc91-2. prokMSA_id:004953 AF178438 Bradyrhizobium th-b2 str. th-b2. prokMSA_id:070194 AF208510 Bradyrhizobium elkanii strain USDA 130 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:071952 AF208512 Bradyrhizobium elkanii strain USDA 31 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:055735 AF208516 Bradyrhizobium elkanii strain USDA 46 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:069329 AF208518 Bradyrhizobium elkanii strain USDA 94 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:039071 AF234890 Bradyrhizobium elkanii strain SEMIA 587 complete prokMSA_id:035940 AF237422 Bradyrhizobium elkanii strain SEMIA 5019 complete prokMSA_id:030810 AF239845 Bradyrhizobium elkanii PRY49 complete prokMSA_id:035242 AF239846 Bradyrhizobium elkanii PRY52 complete prokMSA_id:035973 AF271638 Bradyrhizobium sp. IRBG 271 prokMSA_id:041002 AF288304 Alpha 34632 prokMSA_id:068823 AF293373 Bradyrhizobium elkanii strain USDA 101 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:055820 AF293374 Bradyrhizobium elkanii strain USDA 121 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:056127 AF293376 Bradyrhizobium elkanii strain USDA 23 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:068820 AF293379 Bradyrhizobium elkanii strain USDA 86 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:068819 AF293380 Bradyrhizobium elkanii strain USDA 90 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:017724 AF321215 Bradyrhizobium sp. strain Cj3-3 prokMSA_id:046139 AF362942 Bradyrhizobium elkanii prokMSA_id:026530 AF362946 Bradyrhizobium sp. PFRU 5020 prokMSA_id:047219 AF363116 Bradyrhizobium elkanii strain MSDJ 5566 prokMSA_id:016523 AF363152 Bradyrhizobium elkanii strain USDA 94 prokMSA_id:079448 AF382111 clone ZA2523c prokMSA_id:025796 AF384135 Bradyrhizobium sp. Ppar1-21 prokMSA_id:031000 AF384136 Bradyrhizobium sp. Ppar1-31 prokMSA_id:033324 AF417050 Bradyrhizobium sp. bfs1b prokMSA_id:037053 AF417051 Bradyrhizobium sp. aeky10 prokMSA_id:049609 AF417553 Bradyrhizobium elkanii strain DASA38001 prokMSA_id:021176 AF417554 Bradyrhizobium elkanii strain DASA37005 prokMSA_id:021431 AF417555 Bradyrhizobium elkanii strain DASA35011 prokMSA_id:044293 AF417556 Bradyrhizobium elkanii strain DASA35013 prokMSA_id:017753 AF445133 clone Tc73 prokMSA_id:062850 AF454653 Nb_R2-2 prokMSA_id:081125 AF484605 Bradyrhizobium sp. 82a prokMSA_id:081175 AF484606 Bradyrhizobium sp. 74a prokMSA_id:081897 AF484607 Bradyrhizobium sp. 70a prokMSA_id:082438 AF484608 Bradyrhizobium sp. 29d prokMSA_id:081944 AF484609 Bradyrhizobium sp. 2 prokMSA_id:081300 AF484610 Bradyrhizobium sp. 42s prokMSA_id:081496 AF484611 Bradyrhizobium sp. 60 prokMSA_id:065618 AF507783 soil clone S1209 prokMSA_id:083470 AF508136 Bradyrhizobium sp. Glm-1 prokMSA_id:083126 AF508137 Bradyrhizobium sp. Glm-2 prokMSA_id:086387 AF508138 Bradyrhizobium sp. Kus-4 prokMSA_id:083535 AF508139 Bradyrhizobium sp. Kus-2 prokMSA_id:085410 AF508140 Bradyrhizobium sp. Aei-1 prokMSA_id:083953 AF508141 Bradyrhizobium sp. Vgn-2 prokMSA_id:083006 AF508142 Bradyrhizobium sp. Leb-6 prokMSA_id:086439 AF508143 Bradyrhizobium sp. Leb-11 prokMSA_id:084087 AF508144 Bradyrhizobium sp. Leb-9 prokMSA_id:083937 AF508145 Bradyrhizobium sp. Leb-12 prokMSA_id:084209 AF508146 Bradyrhizobium sp. Crj-1 prokMSA_id:085554 AF508147 Bradyrhizobium sp. Vgn-5 prokMSA_id:084629 AF508148 Bradyrhizobium sp. Leb-16 prokMSA_id:059954 AF509906 Bradyrhizobium sp. KKI14 complete prokMSA_id:087020 AF510578 Bradyrhizobium sp. Glm-4 prokMSA_id:086809 AF510583 Bradyrhizobium sp. Kus-1 prokMSA_id:087737 AF510584 Bradyrhizobium sp. Put-1 prokMSA_id:087011 AF510585 Bradyrhizobium sp. vgn-1 prokMSA_id:087429 AF510586 Bradyrhizobium sp. Kus-3 prokMSA_id:087479 AF510587 Bradyrhizobium sp. vgn-3 prokMSA_id:086936 AF510588 Bradyrhizobium sp. Gls-1 prokMSA_id:087004 AF510589 Bradyrhizobium sp. vga-1 prokMSA_id:086940 AF510590 Bradyrhizobium sp. Mes-1 prokMSA_id:087798 AF510594 Bradyrhizobium sp. Leb-5 prokMSA_id:087600 AF510595 Bradyrhizobium sp. Leb-7 prokMSA_id:087876 AF510596 Bradyrhizobium sp. Leb-8 prokMSA_id:087215 AF510597 Bradyrhizobium sp. Leb-10 prokMSA_id:087306 AF510598 Bradyrhizobium sp. Leb-13 prokMSA_id:087638 AF510601 Bradyrhizobium sp. Phr-1 prokMSA_id:086706 AF510602 Bradyrhizobium sp. vgs-1 prokMSA_id:086856 AF510603 Bradyrhizobium sp. vgs-2 prokMSA_id:087413 AF510604 Bradyrhizobium sp. Pha-1 prokMSA_id:087303 AF510605 Bradyrhizobium sp. Pha-2 prokMSA_id:087577 AF510606 Bradyrhizobium sp. Pha-3 prokMSA_id:087628 AF510607 Bradyrhizobium sp. Pha-4 prokMSA_id:087867 AF510608 Bradyrhizobium sp. vgs-3 prokMSA_id:087702 AF510609 Bradyrhizobium sp. Phr-2 prokMSA_id:087086 AF510610 Bradyrhizobium sp. Pha-5 prokMSA_id:087404 AF510611 Bradyrhizobium sp. Phr-3 prokMSA_id:087095 AF510612 Bradyrhizobium sp. Pha-6 prokMSA_id:087130 AF510613 Bradyrhizobium sp. vgs-4 prokMSA_id:086985 AF510614 Bradyrhizobium sp. Pha-7 prokMSA_id:087519 AF510615 Bradyrhizobium sp. Pha-8 prokMSA_id:086819 AF510616 Bradyrhizobium sp. Pha-9 prokMSA_id:087419 AF510617 Bradyrhizobium sp. vgs-6 prokMSA_id:087551 AF510618 Bradyrhizobium sp. vgs-7 prokMSA_id:087890 AF510619 Bradyrhizobium sp. vgs-8 prokMSA_id:087881 AF510621 Bradyrhizobium sp. Pha-10 prokMSA_id:087066 AF510622 Bradyrhizobium sp. Phr-4 prokMSA_id:087308 AF510623 Bradyrhizobium sp. Phr-5 prokMSA_id:087736 AF510624 Bradyrhizobium sp. Phr-6 prokMSA_id:087183 AF510625 Bradyrhizobium sp. Phr-7 prokMSA_id:087472 AF510635 Bradyrhizobium sp. Glm-3 prokMSA_id:056108 AF514700 Bradyrhizobium sp. jws91-2 prokMSA_id:065351 AF514701 Bradyrhizobium sp. aeky3 prokMSA_id:065319 AF514703 Bradyrhizobium sp. Ai1a-2 prokMSA_id:065317 AF514705 Bradyrhizobium sp. Dr3b-11 prokMSA_id:081162 AF514792 Bradyrhizobium sp. ORS196 prokMSA_id:081433 AF514796 Bradyrhizobium sp. ORS204 prokMSA_id:063273 AF523947 clone FW94 prokMSA_id:020172 AJ252600 Rhizosphere soil isolate RSI-33 prokMSA_id:044842 AJ295462 rape rhizosphere wr0001 prokMSA_id:042229 AJ295465 rape rhizosphere wr0004 prokMSA_id:041143 AJ295466 rape rhizosphere wr0005 prokMSA_id:035751 AJ295467 rape rhizosphere wr0006 prokMSA_id:027689 AJ295470 rape rhizosphere wr0009 prokMSA_id:019027 AJ295471 rape rhizosphere wr0010 prokMSA_id:036499 AJ295474 rape rhizosphere wr0013 prokMSA_id:040221 AJ295483 rape rhizosphere wr0024 prokMSA_id:042602 AJ295560 rape rhizosphere wr0199 prokMSA_id:035279 AJ307939 mRNA clone sipK8 prokMSA_id:067495 AJ430684 Bradyrhizobium sp. DA2 strain DA2 prokMSA_id:067488 AJ430821 Bradyrhizobium sp. DA3 strain DA3 prokMSA_id:067487 AJ430822 Bradyrhizobium sp. DA4 strain DA4 prokMSA_id:075549 AJ534670 alpha clone S15A-MN96 prokMSA_id:093526 AJ581619 alpha clone KCM-C-72 prokMSA_id:094147 AJ582030 alpha clone JG36-GS-25 prokMSA_id:058038 AY029562 Afipia massiliensis prokMSA_id:031311 AY037693 earthworm cast clone C040 prokMSA_id:064297 AY039016 Bradyrhizobium sp. ORS 3260 prokMSA_id:056364 AY039017 Bradyrhizobium sp. ORS 3262 prokMSA_id:031992 AY039303 Bradyrhizobium sp. 5F3 prokMSA_id:030627 AY048949 DW_NbC7-7 prokMSA_id:050022 AY048950 DW_NbC7-9 prokMSA_id:041499 AY048951 DW_NbC7-10 prokMSA_id:064415 AY102909 clone BCM3S-34B prokMSA_id:055334 AY117673 Bradyrhizobium elkanii strain R17 prokMSA_id:076612 AY150897 alpha clone GR8 prokMSA_id:075503 AY154647 earthworm cast clone c310 prokMSA_id:075068 AY159210 RO_isolate_17 prokMSA_id:075032 AY159213 RO_isolate_23 prokMSA_id:078588 AY177369 Phenanthrene-degrading L51B prokMSA_id:098671 AY186074 clone EACUL1A2 small subunit prokMSA_id:098099 AY186080 clone SPCUL1A1 small subunit prokMSA_id:079501 AY187325 clone csbio160315 prokMSA_id:079533 AY187366 clone csbio160115 prokMSA_id:079351 AY187367 clone csbio160276 prokMSA_id:079128 AY187368 clone csbio160156 prokMSA_id:080752 AY187548 Bradyrhizobium sp. Cp5-3 prokMSA_id:080240 AY192256 alpha clone P3-1C prokMSA_id:092573 AY238503 Bradyrhizobium sp. 1 prokMSA_id:082891 AY242669 soil clone Tc131-43 prokMSA_id:086624 AY242670 soil clone Tc129-10 prokMSA_id:087983 AY268348 clone H9 small subunit prokMSA_id:089502 AY315653 Bradyrhizobium sp. CYY3302 prokMSA_id:088884 AY328621 HOClCi72 prokMSA_id:090036 AY329632 Bradyrhizobium sp. Pp2.4 prokMSA_id:092934 AY353564 Bradyrhizobium sp. onl92.6 prokMSA_id:093024 AY353565 Bradyrhizobium sp. lds88.6 prokMSA_id:004966 D13429 Bradyrhizobium japonicum USDA 94. prokMSA_id:004949 D89027 str. HW13. prokMSA_id:004950 D89028 str. HWK12. prokMSA_id:004977 D89029 str. BTH. prokMSA_id:004946 U35000 Bradyrhizobium elkanii. prokMSA_id:070012 U35000 Bradyrhizobium elkanii ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:004967 U87759 Afipia broomeae str. F186. prokMSA_id:004970 U87760 Afipia broomeae str. G7472. prokMSA_id:004971 U87761 Afipia broomeae str. G5958. prokMSA_id:004972 U87781 Afipia genosp. 10 str. G8996. prokMSA_id:004979 X70401 Bradyrhizobium sp. LMG 9514. prokMSA_id:004943 X70402 Bradyrhizobium sp. LMG 9520. prokMSA_id:004945 X70403 Bradyrhizobium sp. LMG 9966. prokMSA_id:004947 X70404 Bradyrhizobium sp. LMG 9980. prokMSA_id:004961 X70405 Bradyrhizobium sp. LMG 10689. prokMSA_id:004951 Z94805 Bradyrhizobium genosp. P str. BDV5111. prokMSA_id:004952 Z94821 Bradyrhizobium genosp. L str. BDV5419. 2.28.1.6.12.10.019 OTU 1 seq prokMSA_id:079543 AY187369 clone csbio160152 2.28.1.6.12.10.020 OTU 1 seq prokMSA_id:080042 AB094866 clone:OHKB6.6 2.28.1.6.12.10.021 OTU 1 seq prokMSA_id:080220 AB094942 clone:OHKB11.62 2.28.1.6.12.10.022 OTU 1 seq prokMSA_id:080278 AY192271 alpha clone P1-3F 2.28.1.6.12.10.023 OTU 1 seq prokMSA_id:084277 AY214843 alpha clone BB-2-C10F 2.28.1.6.12.10.024 OTU 1 seq prokMSA_id:093745 AJ582033 alpha clone JG36-GS-28 2.28.1.6.12.10.025 OTU 1 seq prokMSA_id:098387 AY186081 clone SPCUL1A2 small subunit 2.28.1.6.12.10.999 poor quality 130 seqs prokMSA_id:036317 AB011693 alpha strain: G14110 prokMSA_id:053919 AB011698 alpha strain: G24014 prokMSA_id:030782 AB011699 alpha strain: G24127 prokMSA_id:020846 AB025032 Alpha RD5-C2 prokMSA_id:019393 AB069653 Bradyrhizobium sp. PAC50 prokMSA_id:048055 AB072345 Bacillus subtilis prokMSA_id:031462 AB072346 Bradyrhizobium sp. DASA 35082 prokMSA_id:033628 AB073083 Bradyrhizobium sp. DASA 35052 prokMSA_id:075275 AB075093 clone:KSS7 prokMSA_id:075324 AB075094 clone:KSS8 prokMSA_id:063453 AB088141 Bradyrhizobium sp. DASA 35042 prokMSA_id:063454 AB088142 Bradyrhizobium sp. DASA 35092 prokMSA_id:063169 AB088421 Bradyrhizobium sp. DASA 35096 prokMSA_id:063068 AB088479 Bradyrhizobium sp. DASA 35013 prokMSA_id:081207 AB105539 Bradyrhizobium sp. QA11 prokMSA_id:051283 AF016733 soil clone S-18 prokMSA_id:004975 AF078211 unnamed organism. prokMSA_id:004974 AF078224 unnamed organism. prokMSA_id:004973 AF078225 unnamed organism. prokMSA_id:029410 AF078283 Grassland soil clone saf3_016 prokMSA_id:021258 AF078393 Grassland soil clone sl2_709 prokMSA_id:035268 AF078397 Grassland soil clone sl2_713 prokMSA_id:034310 AF078402 Grassland soil clone sl2_718 prokMSA_id:049816 AF078417 Grassland soil clone sl3_610 prokMSA_id:027103 AF078430 Grassland soil clone sl3_623 prokMSA_id:027352 AF078448 Grassland soil clone sl3_819 prokMSA_id:004948 AF139573 Bradyrhizobium jwc91-2 str. jwc91-2. prokMSA_id:042663 AF145842 Metal-contaminated soil clone K20-47 prokMSA_id:044229 AF146825 Bradyrhizobium sp. DesT1 prokMSA_id:029329 AF146826 Bradyrhizobium sp. DesB1 prokMSA_id:051477 AF176859 24-D-degrading 034 prokMSA_id:023613 AF236089 Bradyrhizobium elkanii strain USDA 31 prokMSA_id:033705 AF260295 Bradyrhizobium elkanii strain PRSFG 28 prokMSA_id:045004 AF270944 clone IAFR109 prokMSA_id:030204 AF352561 Bradyrhizobium sp. Sj9 prokMSA_id:041403 AF352562 Bradyrhizobium sp. Sj27d prokMSA_id:024523 AF388348 clone Ac68 prokMSA_id:050170 AF428816 clone CR98-24-10 prokMSA_id:075157 AF431057 alpha clone N11.107WL prokMSA_id:075024 AF431060 alpha clone N11.124WL prokMSA_id:075528 AF431101 alpha clone S21.39WL prokMSA_id:074933 AF431112 alpha clone S22.29WL prokMSA_id:074943 AF431129 alpha clone N26.151SM prokMSA_id:076173 AF431176 alpha clone N42.24PG prokMSA_id:075091 AF431189 alpha clone C47.08PG prokMSA_id:075421 AF431195 alpha clone C47.44PG prokMSA_id:075317 AF431206 alpha clone S52.10PG prokMSA_id:058113 AF498706 Ellin324 prokMSA_id:072388 AF498734 Ellin352 prokMSA_id:072551 AF498740 Ellin358 prokMSA_id:058073 AF498751 Ellin369 prokMSA_id:065742 AF507638 soil clone C1182 prokMSA_id:065729 AF507651 soil clone C1224 prokMSA_id:065727 AF507656 soil clone C132 prokMSA_id:059946 AF509905 Bradyrhizobium sp. CMU29 prokMSA_id:056012 AF509908 Bradyrhizobium sp. CMU16 complete prokMSA_id:004958 AJ003235 Bradyrhizobium Br8406 str. Br8406. prokMSA_id:004957 AJ225375 clone 19. prokMSA_id:042112 AJ233505 clone WR1137 prokMSA_id:016461 AJ292813 WR860 clone WR860 prokMSA_id:049457 AJ292842 WR838 clone WR838 prokMSA_id:049601 AJ292844 WR8100 clone WR8100 prokMSA_id:016778 AJ292845 WR8137 clone WR8137 prokMSA_id:050981 AJ295476 rape rhizosphere wr0015 prokMSA_id:047773 AJ295479 rape rhizosphere wr0018 prokMSA_id:017703 AJ295480 rape rhizosphere wr0019 prokMSA_id:017981 AJ295482 rape rhizosphere wr0023 prokMSA_id:052168 AJ295485 rape rhizosphere wr0026 prokMSA_id:020528 AJ295486 rape rhizosphere wr0027 prokMSA_id:034516 AJ295488 rape rhizosphere wr0029 prokMSA_id:044476 AJ295500 rape rhizosphere wr0042 prokMSA_id:030238 AJ295502 rape rhizosphere wr0044 prokMSA_id:043297 AJ295504 rape rhizosphere wr0050 prokMSA_id:023631 AJ295505 rape rhizosphere wr0051 prokMSA_id:024723 AJ295508 rape rhizosphere wr0055 prokMSA_id:049699 AJ295509 rape rhizosphere wr0057 prokMSA_id:049138 AJ295510 rape rhizosphere wr0059 prokMSA_id:044212 AJ295524 rape rhizosphere wr0080 prokMSA_id:047952 AJ295525 rape rhizosphere wr0081 prokMSA_id:019920 AJ295526 rape rhizosphere wr0082 prokMSA_id:021870 AJ295529 rape rhizosphere wr0087 prokMSA_id:043371 AJ295531 rape rhizosphere wr0089 prokMSA_id:042094 AJ295533 rape rhizosphere wr0092 prokMSA_id:041558 AJ295539 rape rhizosphere wr0099 prokMSA_id:038444 AJ295541 rape rhizosphere wr0101 prokMSA_id:038796 AJ295543 rape rhizosphere wr0103 prokMSA_id:047521 AJ295545 rape rhizosphere wr0105 prokMSA_id:020136 AJ295546 rape rhizosphere wr0106 prokMSA_id:040452 AJ295553 rape rhizosphere wr0114 prokMSA_id:022831 AJ295556 rape rhizosphere wr0119 prokMSA_id:072199 AJ437416 clone 1_34_119 prokMSA_id:062614 AJ504502 isolate P1CN35 prokMSA_id:062610 AJ504507 isolate P1CN40 prokMSA_id:057279 AJ518195 clone Mul2P1-29 prokMSA_id:057269 AJ518212 clone Mul2P1-77 prokMSA_id:057098 AJ518439 clone Neu4P3-52 prokMSA_id:055767 AY043612 alpha clone NOW2.32WL prokMSA_id:056270 AY043632 alpha clone NOS7.119WL prokMSA_id:061480 AY043742 alpha clone NMW3.185WL prokMSA_id:061467 AY043759 alpha clone SMW4.57WL prokMSA_id:061458 AY043772 alpha clone SMS9.114WL prokMSA_id:063508 AY117666 Rhizobium sp. PRF148 prokMSA_id:063501 AY117674 Bradyrhizobium elkanii strain R35 prokMSA_id:063499 AY117675 Bradyrhizobium japonicum strain R45 prokMSA_id:072303 AY144192 alpha clone LTUA01514 prokMSA_id:075817 AY150940 alpha clone uv23a prokMSA_id:097234 AY160862 clone COB P5-18 prokMSA_id:079561 AY186800 clone unel10 prokMSA_id:079397 AY186830 alpha clone uv23a prokMSA_id:080470 AY192245 alpha clone W1-5F prokMSA_id:080681 AY192252 alpha clone P1-5H prokMSA_id:079674 AY192260 alpha clone P3-4B prokMSA_id:082419 AY196143 Bradyrhizobium sp. M7.2 prokMSA_id:085691 AY217459 alpha clone WCB125 prokMSA_id:082889 AY242668 soil clone TcA7 prokMSA_id:090082 AY289424 soil clone DS-11 prokMSA_id:090475 AY289427 soil clone ABS-98 prokMSA_id:094125 AY364042 alpha clone cRI19c prokMSA_id:093253 AY364055 alpha clone cRI2a prokMSA_id:097835 AY395112 clone B26R prokMSA_id:097760 AY395179 clone H20K prokMSA_id:096380 AY395203 clone L08K prokMSA_id:097435 AY395222 clone Roth06 prokMSA_id:004960 D26238 soil from paddy field clone PAD51. prokMSA_id:004976 D84635 str. S24520. prokMSA_id:004978 D89030 str. RCO. prokMSA_id:004944 M55487 Bradyrhizobium japonicum USDA 31. prokMSA_id:004942 M55490 Bradyrhizobium japonicum USDA 76 . prokMSA_id:025425 U45681 activated sludge AI359 prokMSA_id:004959 X97082 str. TM51. 2.28.1.6.12.11 BDR.JAPONICUM8_SUBGROUP 24 seqs 2.28.1.6.12.11.001 OTU 18 seqs prokMSA_id:004984 AB003459 str. G14127. prokMSA_id:004985 AB003460 str. G14109. prokMSA_id:022742 AB070567 Bradyrhizobium japonicum strain:NK2 prokMSA_id:038637 AB070568 Bradyrhizobium japonicum strain:NK5 prokMSA_id:037489 AB070569 Bradyrhizobium japonicum strain:NK6 prokMSA_id:056479 AB072419 Bradyrhizobium japonicum isolate:NA6676 prokMSA_id:067699 AB072420 Bradyrhizobium japonicum isolate:NA6678 prokMSA_id:049866 AF193818 Bradyrhizobium sp. B071 complete prokMSA_id:037715 AF363137 Bradyrhizobium japonicum strain MSDJ G49 prokMSA_id:027694 AF363150 Bradyrhizobium japonicum strain USDA 110 prokMSA_id:039826 AF384140 Bradyrhizobium sp. Pplu1-11 prokMSA_id:027428 AF417552 Bradyrhizobium japonicum strain DASA37011 prokMSA_id:087525 AF510581 Bradyrhizobium sp. Glm-7 prokMSA_id:081409 AY169423 Bradyrhizobium japonicum prokMSA_id:004980 X87272 Bradyrhizobium japonicum. prokMSA_id:004981 Z94808 Bradyrhizobium genosp. M str. BDV5493. prokMSA_id:004982 Z94812 Bradyrhizobium genosp. B str. BDV5040. prokMSA_id:004983 Z94815 Bradyrhizobium genosp. F str. BDV5029. 2.28.1.6.12.11.999 poor quality 6 seqs prokMSA_id:074898 AB075169 clone:TSS6 prokMSA_id:083288 AB107156 Alpha K-2057b parital prokMSA_id:047543 AF226170 Maize root ZmrIs5 prokMSA_id:046815 AF226209 maize root Zmrc164 prokMSA_id:069903 AF436822 Bradyrhizobium sp. STM1472 prokMSA_id:069590 AF436823 Bradyrhizobium sp. STM1473 2.28.1.6.12.12 BDR.LIAONINGENSIS_SUBGROUP 87 seqs 2.28.1.6.12.12.001 OTU 65 seqs prokMSA_id:005009 AB003457 str. G14130. prokMSA_id:005010 AB003458 str. G14003. prokMSA_id:004998 AB004806 Bradyrhizobium japonicum subsp. HRS str. NK2. prokMSA_id:004999 AB004807 Bradyrhizobium japonicum subsp. HRS str. NK5. prokMSA_id:005000 AB004808 Bradyrhizobium japonicum subsp. HRS str. NK6. prokMSA_id:043234 AB070562 Bradyrhizobium japonicum strain:NA6545 prokMSA_id:067706 AB072415 Bradyrhizobium japonicum isolate:NA6116 prokMSA_id:067704 AB072416 Bradyrhizobium japonicum isolate:NA6154 prokMSA_id:067703 AB072417 Bradyrhizobium japonicum isolate:NA6080 prokMSA_id:067702 AB072418 Bradyrhizobium japonicum isolate:NA6086 prokMSA_id:004997 AF159436 Bradyrhizobium Pe1-3 str. Pe1-3. prokMSA_id:004996 AF159437 Bradyrhizobium Pe4 str. Pe4. prokMSA_id:004995 AF159438 Bradyrhizobium Mm1-3 str. Mm1-3. prokMSA_id:055721 AF208503 Bradyrhizobium japonicum strain USDA 122 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:055787 AF208506 Bradyrhizobium japonicum strain USDA 125 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:074750 AF208507 Bradyrhizobium japonicum strain USDA 126 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:056515 AF208509 Bradyrhizobium japonicum strain USDA 129 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:069495 AF208517 Bradyrhizobium japonicum strain USDA 62 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:038985 AF216780 Bradyrhizobium sp. Tv2a-2 prokMSA_id:077279 AF234889 Bradyrhizobium japonicum strain SEMIA 5080 complete prokMSA_id:077282 AF236087 Bradyrhizobium japonicum strain SEMIA 586 complete prokMSA_id:068818 AF293381 Bradyrhizobium japonicum strain USDA 91 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:068817 AF293382 Bradyrhizobium japonicum strain USDA 92 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:019182 AF321212 Bradyrhizobium sp. strain Ec3-3 prokMSA_id:023514 AF321213 Bradyrhizobium sp. strain Rp2-1 prokMSA_id:024854 AF321214 Bradyrhizobium sp. strain Da3-1 prokMSA_id:050479 AF363127 Bradyrhizobium japonicum strain MSDJ 5732 prokMSA_id:025125 AF363142 Bradyrhizobium sp. MSDJ 5728 prokMSA_id:033081 AF384137 Bradyrhizobium sp. Ppau3-41 prokMSA_id:017820 AF384139 Bradyrhizobium sp. Pplu1-1 prokMSA_id:068929 AF417546 Bradyrhizobium japonicum strain DASA03066 prokMSA_id:030905 AF417953 Alpha BiesA23 prokMSA_id:035661 AF417954 Alpha BiesA51 prokMSA_id:037935 AF417960 Alpha BiesB31 prokMSA_id:023721 AF417961 Alpha BiesB33 prokMSA_id:053780 AF417963 Alpha BiesB45 prokMSA_id:082430 AF484617 Bradyrhizobium sp. 104a1 prokMSA_id:081752 AF484618 Bradyrhizobium sp. 70b2 prokMSA_id:081736 AF484620 Bradyrhizobium sp. 123b prokMSA_id:087812 AF510582 Bradyrhizobium sp. Glm-8 prokMSA_id:087908 AF510591 Bradyrhizobium sp. Crj-2 prokMSA_id:087593 AF510593 Bradyrhizobium sp. Kus-6 prokMSA_id:087872 AF510599 Bradyrhizobium sp. Leb-14 prokMSA_id:087012 AF510600 Bradyrhizobium sp. NK-3 prokMSA_id:065318 AF514704 Bradyrhizobium sp. Pp3a-10 prokMSA_id:022219 AJ292603 WD275 clone WD275 prokMSA_id:096406 AJ558028 Bradyrhizobium sp. ISLU207 strain ISLU207 prokMSA_id:097170 AJ558030 Bradyrhizobium sp. BC-C1 strain BC-C1 prokMSA_id:095324 AJ558031 Bradyrhizobium sp. ISLU35 strain ISLU35 prokMSA_id:076302 AP005940 Bradyrhizobium japonicum complete genome strain: USDA110 section 6/31 prokMSA_id:057508 AY149117 Bradyrhizobium sp. CCBAU 23046 prokMSA_id:089683 AY329630 Bradyrhizobium sp. Pp3a.1 prokMSA_id:090709 AY329631 Bradyrhizobium sp. Dr4a.7 prokMSA_id:094343 AY372184 Bradyrhizobium betae prokMSA_id:004987 L23330 Bradyrhizobium japonicum str. MAR 1491 USDA 110. prokMSA_id:004988 L23331 Bradyrhizobium japonicum USDA 136. prokMSA_id:004990 Z35330 Bradyrhizobium japonicum. prokMSA_id:005001 Z94809 Bradyrhizobium genosp. C str. BDV5792. prokMSA_id:005002 Z94810 Bradyrhizobium genosp. K str. BDV5358. prokMSA_id:005003 Z94811 Bradyrhizobium genosp. A str. BDV5028. prokMSA_id:005004 Z94813 Bradyrhizobium genosp. D str. BDV5563. prokMSA_id:005005 Z94818 Bradyrhizobium genosp. I str. BDV5370. prokMSA_id:005006 Z94820 Bradyrhizobium genosp. J str. BDV5697. prokMSA_id:005007 Z94822 Bradyrhizobium genosp. N str. BDV5400. prokMSA_id:005008 Z94823 Bradyrhizobium genosp. O str. BDV5840. 2.28.1.6.12.12.002 OTU 1 seq prokMSA_id:065644 AF507750 soil clone S1107 2.28.1.6.12.12.003 OTU 1 seq prokMSA_id:092944 AY352448 alpha clone AVC3 2.28.1.6.12.12.999 poor quality 20 seqs prokMSA_id:036904 AB011697 alpha strain: G14130 prokMSA_id:025666 AF247783 Soil clone WD4 prokMSA_id:071178 AJ431285 clone 1_35 prokMSA_id:073694 AJ431313 clone 2_19 prokMSA_id:073469 AJ437406 clone 1_32_115 prokMSA_id:072836 AJ437414 clone 1_34_116 prokMSA_id:071217 AJ437415 clone 1_34_117 prokMSA_id:072887 AJ437432 clone 1_34_106 prokMSA_id:072233 AJ437433 clone 1_34_207 prokMSA_id:070086 AJ437434 clone 1_34_222 prokMSA_id:070250 AJ437435 clone 1_34_401 prokMSA_id:073479 AJ437436 clone 1_34_405 prokMSA_id:065449 AY102336 clone a13150 prokMSA_id:004991 D85408 Bradyrhizobium japonicum USDA 122. prokMSA_id:004992 D85409 Bradyrhizobium japonicum USDA 125. prokMSA_id:004993 D85411 Bradyrhizobium japonicum USDA 138. prokMSA_id:004994 D85413 Bradyrhizobium japonicum USDA 62. prokMSA_id:004986 M55485 Bradyrhizobium japonicum str. MAR 1491 USDA 110. prokMSA_id:004989 M55488 Bradyrhizobium japonicum RCR 3407. prokMSA_id:005011 X86065 Bradyrhizobium liaoningensis str. ESG 2062. 2.28.1.6.12.13 PHR.SP230_SUBGROUP 11 seqs 2.28.1.6.12.13.001 OTU 1 seq prokMSA_id:005020 X77119 Bradyrhizobium sp. LMG 8295. 2.28.1.6.12.13.002 OTU 2 seqs prokMSA_id:005019 L23407 Photorhizobium sp. str. IRBG 230. prokMSA_id:005016 L23408 Photorhizobium sp. str. MKAa 2. 2.28.1.6.12.13.003 OTU 1 seq prokMSA_id:005015 L23409 Photorhizobium sp. str. MKAa 3. 2.28.1.6.12.13.999 poor quality 7 seqs prokMSA_id:057251 AJ518235 clone Mul2P2-33 prokMSA_id:005021 D28792 str. H58. prokMSA_id:005017 L23406 Photorhizobium sp. str. IRBG2. prokMSA_id:005014 M55486 Bradyrhizobium sp. str. NZP 2257 Lotus. prokMSA_id:005012 U04715 Bradyrhizobium sp. str. IRBG 2. prokMSA_id:005018 U04716 Bradyrhizobium sp. ORS 322. prokMSA_id:005013 U04719 Bradyrhizobium sp. IRBG 230. 2.28.1.6.12.14 BLB.DENITRIFICANS_SUBGROUP 90 seqs 2.28.1.6.12.14.001 OTU 27 seqs prokMSA_id:062343 AB079633 Bradyrhizobium sp. BTAi 1 prokMSA_id:062338 AB079675 Bradyrhizobium sp. IRBG 2 prokMSA_id:062335 AB079676 Bradyrhizobium sp. IRBG 228 prokMSA_id:062336 AB079677 Bradyrhizobium sp. IRBG 230 prokMSA_id:037744 AF230718 Bradyrhizobium sp. ORS2005 prokMSA_id:048474 AF230719 Bradyrhizobium sp. ORS2006 prokMSA_id:023742 AF230720 Bradyrhizobium sp. ORS2011 prokMSA_id:031138 AF230721 Bradyrhizobium sp. ORS2012 prokMSA_id:033290 AF230722 Bradyrhizobium sp. ORS285 prokMSA_id:043422 AF239254 Bradyrhizobium sp. STM461 prokMSA_id:025191 AF239255 Bradyrhizobium sp. ORS278 prokMSA_id:068816 AF338176 Blastobacter denitrificans ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:027860 AF371935 clone p-5142-2Wb3 prokMSA_id:071353 AF387321 Bradyrhizobium sp. C7T1 prokMSA_id:035423 AF445742 alpha clone SM2H01 prokMSA_id:091983 AF509581 alpha prokMSA_id:091683 AF509582 alpha prokMSA_id:005037 AJ133779 Bradyrhizobium sp. LMG 12187. prokMSA_id:075788 AY159209 RO_isolate_14 prokMSA_id:091000 AY344376 clone K2-30-16 prokMSA_id:091020 AY344390 clone L125-24 prokMSA_id:005055 D78366 Agromonas oligotrophica JCM 1494 . prokMSA_id:005046 D86354 Bradyrhizobium sp. USDA 4362. prokMSA_id:005048 D86355 Bradyrhizobium sp. USDA 4377. prokMSA_id:005062 L23405 Photorhizobium thompsonianum str. BTAi. prokMSA_id:005025 S46917 Blastobacter denitrificans LMG 8443 . prokMSA_id:005058 X66025 Blastobacter denitrificans LMG 8443 . 2.28.1.6.12.14.003 OTU 1 seq prokMSA_id:005026 U87783 Afipia genosp. 12 str. G8997. 2.28.1.6.12.14.005 OTU 4 seqs prokMSA_id:005045 AF041446 Bradyrhizobium 'SH 283012' str. SH 283012. prokMSA_id:057890 AY141982 Bradyrhizobium sp. SH28301 prokMSA_id:081164 AY196139 Bradyrhizobium sp. T17.1 prokMSA_id:082205 AY216437 clone HC65 2.28.1.6.12.14.006 OTU 1 seq prokMSA_id:066567 AJ487020 amplicon G 2.28.1.6.12.14.007 OTU 1 seq prokMSA_id:074985 AY159216 RO_isolate_32 2.28.1.6.12.14.008 OTU 1 seq prokMSA_id:075557 AJ518762 alpha clone JG37-AG-3 2.28.1.6.12.14.009 OTU 1 seq prokMSA_id:076714 AY159212 RO_isolate_19 2.28.1.6.12.14.010 OTU 1 seq prokMSA_id:083157 AY242671 soil clone Tc129-12 2.28.1.6.12.14.011 OTU 1 seq prokMSA_id:092427 AY353701 isolate Ph8 2.28.1.6.12.14.012 OTU 1 seq prokMSA_id:098457 AB121773 Bradyrhizobium sp. Shinshu-th2 2.28.1.6.12.14.999 poor quality 51 seqs prokMSA_id:005042 AB003464 str. G14121. prokMSA_id:005047 AB003465 str. G14123. prokMSA_id:005043 AB003466 str. G14124. prokMSA_id:005044 AB003467 str. G14133. prokMSA_id:005029 AB011682 str. G14001. prokMSA_id:005030 AB011683 str. G14003. prokMSA_id:005031 AB011684 str. G14109. prokMSA_id:005032 AB011685 str. G14121. prokMSA_id:005033 AB011686 str. G14123. prokMSA_id:005034 AB011687 str. G14124. prokMSA_id:005035 AB011688 str. G14127. prokMSA_id:005036 AB011689 str. G14133. prokMSA_id:005038 AB011701 str. G24028. prokMSA_id:016955 AB069654 Bradyrhizobium sp. PAC24 prokMSA_id:048846 AB070830 Bradyrhizobium sp. AMGIVS prokMSA_id:040608 AB070831 Bradyrhizobium sp. DASA 35027 prokMSA_id:082000 AB105537 Bradyrhizobium japonicum isolate:QA4 prokMSA_id:005027 AF000550 Bradyrhizobium BC-C1 str. BC-C1. prokMSA_id:005028 AF000559 Bradyrhizobium 'CIAT 3101' CIAT 3101. prokMSA_id:075872 AF431068 alpha clone N12.16WL prokMSA_id:074950 AF431204 alpha clone S51.50PG prokMSA_id:064349 AF521027 clone Dpcom23 prokMSA_id:017435 AJ404559 Bradyrhizobium BR1 prokMSA_id:057087 AJ518455 clone Neu4P3-7 prokMSA_id:055623 AY043629 alpha clone NOS7.109WL prokMSA_id:075342 AY150957 clone uvi9 prokMSA_id:075536 AY159189 RO_clone_69 prokMSA_id:079559 AY186810 clone unel14 prokMSA_id:079286 AY186847 clone uvi9 prokMSA_id:082629 AY217456 alpha clone WCB114 prokMSA_id:088811 AY289415 soil clone DS-102 prokMSA_id:005049 D28804 unnamed organism. prokMSA_id:005050 D28805 unnamed organism. prokMSA_id:005051 D28806 unnamed organism. prokMSA_id:005039 D84604 str. S23321. prokMSA_id:005040 D84634 str. S24516. prokMSA_id:005041 D84644 str. S24556. prokMSA_id:005064 L41526 Bradyrhizobium sp. str. BTAi-1. prokMSA_id:005056 L41527 Bradyrhizobium sp. str. 32H1. prokMSA_id:005065 L41528 Bradyrhizobium sp. str. MA1977-1. prokMSA_id:005023 L41529 Bradyrhizobium sp. str. NC123. prokMSA_id:005024 M55492 Bradyrhizobium sp. str. BTAi1. prokMSA_id:005057 U04720 Bradyrhizobium sp. IRBG 231. prokMSA_id:005061 U12898 Bradyrhizobium sp. str. MAR 411; IC 7011; 3G4b20. prokMSA_id:005059 U12899 Bradyrhizobium sp. str. MAR 967. prokMSA_id:005063 U12901 Bradyrhizobium sp. str. MAR 1505; TAL 169. prokMSA_id:005060 U12902 Bradyrhizobium sp. str. MAR 1510; TAL 309; CB 756. prokMSA_id:005053 U12905 Bradyrhizobium sp. str. MAR 1576; TAL 1380 32H1. prokMSA_id:005052 U12911 Bradyrhizobium japonicum str. MAR 1491 USDA 110. prokMSA_id:005022 U12912 Bradyrhizobium japonicum str. MAR 1526 USDA 123. prokMSA_id:005054 U13011 Bradyrhizobium sp. str. MAR 471. 2.28.1.6.13 RDB.MARINUM_SUBGROUP 62 seqs 2.28.1.6.13.001 OTU 4 seqs prokMSA_id:063876 AB087720 Rhodopseudomonas julia complete prokMSA_id:055679 AF513478 Rhizobiaceae PH34B prokMSA_id:005073 D30790 Rhodobium marinum DSM 2698 . prokMSA_id:005074 D30791 Rhodopseudomonas sp. str. H. Gest HG/JF ATCC 35601. 2.28.1.6.13.002 OTU 1 seq prokMSA_id:005067 AB009205 clone RFN49. 2.28.1.6.13.003 OTU 1 seq prokMSA_id:005066 D30792 Rhodobium orientis str. MB312 JCM 9337 . 2.28.1.6.13.004 OTU 1 seq prokMSA_id:020480 AF008564 Phyllobacterium rubiacearum complete 2.28.1.6.13.005 OTU 1 seq prokMSA_id:025832 AJ244806 Alpha SOGA29 2.28.1.6.13.006 OTU 1 seq prokMSA_id:039831 AF445649 alpha clone SM1A09 2.28.1.6.13.007 OTU 1 seq prokMSA_id:055416 AY095383 yard-trimming-compost clone S-11 2.28.1.6.13.008 OTU 1 seq prokMSA_id:050080 AF143833 clone 4-Org2-27 2.28.1.6.13.009 OTU 1 seq prokMSA_id:066822 AF370880 Nordella oligomobilis 2.28.1.6.13.010 OTU 1 seq prokMSA_id:072005 AF143822 clone 4-Org1-14 2.28.1.6.13.011 OTU 1 seq prokMSA_id:078313 AJ401216 Rhodobium sp. AR2106 2.28.1.6.13.999 poor quality 48 seqs prokMSA_id:021536 AF078331 Grassland soil clone sl1_104 prokMSA_id:070496 AF078360 Grassland soil clone sl1_223 prokMSA_id:023303 AF231434 Humic substances enrichment clone A38 prokMSA_id:019597 AF231449 Humic substances enrichment clone T3 prokMSA_id:043823 AF245323 SA8 prokMSA_id:024277 AF287027 alpha EC-B100 prokMSA_id:023781 AF332320 clone T26-31 prokMSA_id:068193 AF365534 clone BM89MF5BH3b prokMSA_id:068059 AF365689 clone BT60DS1BB6 prokMSA_id:067939 AF365834 clone BT60PA10BD5 prokMSA_id:027137 AF429105 clone CR99-7-71 prokMSA_id:076468 AF431080 alpha clone C16.20WL prokMSA_id:075562 AF431098 alpha clone C17.60WL prokMSA_id:076466 AF431127 alpha clone N26.143SM prokMSA_id:076356 AF431134 alpha clone N27.28SM prokMSA_id:076362 AF431167 alpha clone S37.48SM prokMSA_id:076914 AF431183 alpha clone N42.51PG prokMSA_id:075295 AF431207 alpha clone S52.35PG prokMSA_id:076376 AF432764 clone N41.126PG prokMSA_id:077221 AF432804 clone N28.19SM prokMSA_id:045733 AF442016 alpha clone CD12H9 prokMSA_id:057872 AF546914 clone E5-46-BF1-158 prokMSA_id:020654 AJ233479 clone WR140 prokMSA_id:042511 AJ233492 clone WR196 prokMSA_id:024248 AJ244336 Riz1046 prokMSA_id:049744 AJ244801 Alpha SOGA24 prokMSA_id:052432 AJ292817 WR873 clone WR873 prokMSA_id:035341 AJ310387 strain NS0343 prokMSA_id:027512 AJ421903 clone Alt9-K72 prokMSA_id:058359 AJ489396 clone NS-G34 prokMSA_id:037245 AY038467 alpha clone CD2F11 prokMSA_id:043629 AY038468 alpha clone CD2F12 prokMSA_id:061570 AY043638 alpha clone NOS7.141WL prokMSA_id:061564 AY043647 alpha clone NOS7.61WL prokMSA_id:028902 AY046068 clone 1-1 4 prokMSA_id:069302 AY144195 alpha clone LTUA02114 prokMSA_id:080587 AY192264 alpha clone S2-5H prokMSA_id:085184 AY242697 soil clone Tc128-4 prokMSA_id:086740 AY283089 alpha clone NS-41 prokMSA_id:088018 AY283095 alpha clone NS-70 prokMSA_id:087584 AY283100 delta clone NS-15 prokMSA_id:088132 AY311804 Dpcom106 prokMSA_id:005069 D14426 Rhodopseudomonas sp. str. CP-B-2. prokMSA_id:005070 D14427 Rhodopseudomonas sp. str. CP-B-3. prokMSA_id:005072 D14434 Rhodobium marinum NCIMB 2201 . prokMSA_id:005071 M27534 Rhodopseudomonas marina subsp. agilis str. GN-14. prokMSA_id:005075 U09830 clone JAP553. prokMSA_id:005068 X97088 str. TM244. 2.28.1.6.14 CAU.VIBRIOIDES_SUBGROUP_I 2 seqs 2.28.1.6.14.999 poor quality 2 seqs prokMSA_id:005077 X63362 Caulobacter vibrioides str. CB13. prokMSA_id:005076 X63363 Caulobacter vibrioides str. CB15. 2.28.1.6.15 MSO.HUAKUII_SUBGROUP 113 seqs 2.28.1.6.15.001 OTU 1 seq prokMSA_id:005104 AJ011919 Roseospirillum parvum str. 930I. 2.28.1.6.15.002 OTU 68 seqs prokMSA_id:005094 AF041442 Mesorhizobium amorphae ACCC 19665 . prokMSA_id:005098 AF041444 Mesorhizobium 'SH 15003' str. SH 15003. prokMSA_id:038122 AF156710 Mesorhizobium sp. WG prokMSA_id:037613 AF282928 Mesorhizobium sp. USDA 3466 prokMSA_id:043194 AF345543 Rhizobium sp. SDW014 prokMSA_id:020161 AF410897 Mesorhizobium sp. Lo7-12 prokMSA_id:081920 AF484584 Mesorhizobium sp. xhj26 prokMSA_id:081155 AF484585 Mesorhizobium sp. xhj20 prokMSA_id:081955 AF484586 Mesorhizobium sp. xhj13 prokMSA_id:081863 AF484587 Mesorhizobium sp. xhj23 prokMSA_id:082228 AF484588 Mesorhizobium sp. xhj18 prokMSA_id:081679 AF484589 Mesorhizobium sp. xhm5 prokMSA_id:082330 AF484590 Mesorhizobium sp. xhj7 prokMSA_id:081355 AF484591 Mesorhizobium sp. xhj15 prokMSA_id:082324 AF484592 Mesorhizobium sp. xhj8 prokMSA_id:081245 AF484593 Mesorhizobium sp. xhj27 prokMSA_id:082295 AF484594 Mesorhizobium sp. 98d2 prokMSA_id:087315 AF509909 Mesorhizobium sp. Leb-3 prokMSA_id:087700 AF509910 Mesorhizobium sp. Leb-1 prokMSA_id:087644 AF509911 Mesorhizobium sp. NK-2 prokMSA_id:086895 AF509912 Mesorhizobium sp. NK-1 prokMSA_id:087097 AF509913 Mesorhizobium sp. Leb-4 prokMSA_id:086873 AF509914 Mesorhizobium sp. Leb-2 prokMSA_id:087441 AF509915 Mesorhizobium sp. Rop-4 prokMSA_id:087120 AF509916 Mesorhizobium sp. vgn-4 prokMSA_id:087207 AF509917 Mesorhizobium sp. vgn-5 prokMSA_id:087868 AF509918 Mesorhizobium sp. Aei-2 prokMSA_id:087968 AF509919 Mesorhizobium sp. Rop-2 prokMSA_id:086871 AF509920 Mesorhizobium sp. Rop-3 prokMSA_id:087396 AF509921 Mesorhizobium sp. Rop-1 prokMSA_id:087647 AF509923 Mesorhizobium sp. Amf-4 prokMSA_id:086951 AF509924 Mesorhizobium sp. Amf-2 prokMSA_id:087199 AF509925 Mesorhizobium sp. Amf-1 prokMSA_id:087546 AF509926 Mesorhizobium sp. Amf-3 prokMSA_id:087612 AF509927 Mesorhizobium sp. Put-2 prokMSA_id:086804 AF509928 Mesorhizobium sp. Put-3 prokMSA_id:087262 AF509929 Mesorhizobium sp. Loc-1 prokMSA_id:087919 AF509930 Mesorhizobium sp. Amf-5 prokMSA_id:082013 AF514800 Mesorhizobium sp. ORS207 prokMSA_id:064377 AF516881 Mesorhizobium plurifarium subsp. americum strain Ls29 prokMSA_id:064378 AF516882 Mesorhizobium plurifarium subsp. americum strain Ls38 prokMSA_id:064376 AF516883 Mesorhizobium plurifarium subsp. americum strain Sn2 prokMSA_id:044114 AJ007854 Mesorhizobium sp. HN8A1 prokMSA_id:038189 AJ007855 Mesorhizobium sp. ZJ15B7 prokMSA_id:024429 AJ232884 clone LRE10 prokMSA_id:074017 AJ295079 Mesorhizobium plurifarium strain ORS1096 LMG 15298 prokMSA_id:071992 AJ295080 Mesorhizobium plurifarium strain ORS1255 LMG 15320 prokMSA_id:048243 AJ295081 Mesorhizobium sp. ORS1259 strain ORS1259 LMG 15324 prokMSA_id:035591 AJ295082 Mesorhizobium sp. ORS1080 strain ORS1080 LMG 15287 prokMSA_id:026637 AJ315352 Mesorhizobium loti strain LMG 17826t2 prokMSA_id:044758 AP003001 Mesorhizobium loti complete genome section 8/21 prokMSA_id:063530 AY117620 Mesorhizobium sp. PRF86 complete prokMSA_id:083113 AY230775 Mesorhizobium sp. 'Smarlab BioMol-2302657' prokMSA_id:082685 AY242686 soil clone Tc135-217 prokMSA_id:090087 AY307926 Mesorhizobium sp. NMB1 prokMSA_id:005082 D12791 Mesorhizobium loti IAM 13588. prokMSA_id:005093 D12797 Mesorhizobium huakuii IAM 14158 . prokMSA_id:005091 D13431 Mesorhizobium huakuii IFO 15243. prokMSA_id:046665 NC_002678 Mesorhizobium loti complete genome prokMSA_id:005085 U50166 Mesorhizobium loti str. 261 ICMP 3153. prokMSA_id:005099 X68389 Mesorhizobium plurifarium LMG 7836. prokMSA_id:005081 X68391 Rhizobium sp. LMG 7854. prokMSA_id:005086 Y14158 Mesorhizobium plurifarium str. ORS 1032 LMG 11892 . prokMSA_id:005096 Y14159 Mesorhizobium loti LMG 6123. prokMSA_id:005083 Y14160 Mesorhizobium loti LMG 6124. prokMSA_id:005089 Y14161 Mesorhizobium plurifarium LMG 10056. prokMSA_id:005084 Z94807 Mesorhizobium genosp. T str. BDV5908. prokMSA_id:005097 Z94819 Mesorhizobium genosp. U str. BDV5514. 2.28.1.6.15.003 OTU 1 seq prokMSA_id:005088 AF146237 clone CLEAR-13. 2.28.1.6.15.004 OTU 1 seq prokMSA_id:005087 AF146240 clone CLEAR-17. 2.28.1.6.15.005 OTU 1 seq prokMSA_id:031656 AJ318175 alpha clone BIsi40 2.28.1.6.15.006 OTU 1 seq prokMSA_id:072907 AF280865 mle1-44 2.28.1.6.15.007 OTU 1 seq prokMSA_id:076556 AJ518780 alpha clone JG37-AG-141 2.28.1.6.15.008 OTU 1 seq prokMSA_id:079154 AB099999 sequences clone: IndB1-38 2.28.1.6.15.009 OTU 1 seq prokMSA_id:087972 AY268244 clone E9 small subunit 2.28.1.6.15.010 OTU 1 seq prokMSA_id:093996 AJ581584 alpha clone KCM-B-5 2.28.1.6.15.011 OTU 1 seq prokMSA_id:098071 AY186076 clone EACUL1D1 small subunit 2.28.1.6.15.999 poor quality 35 seqs prokMSA_id:005095 AB000478 IFO 13615. prokMSA_id:040089 AB011690 alpha strain: G14009 prokMSA_id:028936 AB011692 alpha strain: G14028 prokMSA_id:054451 AB011710 alpha strain: G23127 prokMSA_id:031418 AB011711 alpha strain: G24102 prokMSA_id:018064 AB015968 Mesorhizobium huakuii strain My7 prokMSA_id:022699 AB015970 Mesorhizobium huakuii strain OUT30020 prokMSA_id:039653 AB054946 Sinorhizobium sp. 1092c prokMSA_id:020020 AF078400 Grassland soil clone sl2_716 prokMSA_id:028807 AF128658 soil C0151 prokMSA_id:041095 AF175894 Aquatic RUB_NH4_10 prokMSA_id:033003 AF175896 Aquatic RUB_NH4_12 prokMSA_id:049043 AF250423 Mesorhizobium sp. D65 prokMSA_id:034631 AF299360 Mesorhizobium genosp. U prokMSA_id:068229 AF365494 clone BM89MF5BA9 prokMSA_id:068165 AF365567 clone BT49MF4BD8 prokMSA_id:076600 AF431125 alpha clone N26.136SM prokMSA_id:065350 AF513610 clone Dpcom04 prokMSA_id:049285 AJ295552 rape rhizosphere wr0113 prokMSA_id:046438 AJ421163 clone C7-K15 prokMSA_id:063516 AY117621 Mesorhizobium sp. PRF62 prokMSA_id:077229 AY159162 MF_isolate_22 prokMSA_id:087636 AY268232 clone F3 small subunit prokMSA_id:005100 D84623 Rhizobium sp. str. S23423. prokMSA_id:005101 D84631 Rhizobium sp. str. S23442. prokMSA_id:005102 D84639 Rhizobium sp. str. S24538. prokMSA_id:005103 D84642 Rhizobium sp. str. S24543. prokMSA_id:005079 NONE Rhizobium sp. str. ciam2209.Rhizobium isolate. prokMSA_id:005080 NONE Rhizobium sp. str. 3357.Rhizobium isolate. prokMSA_id:005092 NONE Rhizobium sp. str. 3353.Rhizobium isolate. prokMSA_id:005106 NONE Rhizobium sp. str. 3143.Rhizobium isolate. prokMSA_id:005090 S74905 Mesorhizobium huakuii CCBAU 2609 . prokMSA_id:005078 U58345 str. E-42. prokMSA_id:039416 U87508 marine prokMSA_id:005105 X84634 str. SBR2108. 2.28.1.6.16 MSO.LOTI_SUBGROUP 296 seqs 2.28.1.6.16.001 OTU 1 seq prokMSA_id:005159 AF159657 clone HstpL48. 2.28.1.6.16.005 OTU 1 seq prokMSA_id:005137 AB015246 str. JTB260. 2.28.1.6.16.006 OTU 1 seq prokMSA_id:005136 U78037 unnamed organism. 2.28.1.6.16.007 OTU 2 seqs prokMSA_id:038898 AF359524 Marine ALUS253_28 prokMSA_id:005135 D88524 Ahrensia kielensis IAM 12618 . 2.28.1.6.16.010 OTU 1 seq prokMSA_id:005126 AB016848 str. MBIC3923. 2.28.1.6.16.011 OTU 1 seq prokMSA_id:005123 AF170752 str. QSSC9-9. 2.28.1.6.16.013 OTU 1 seq prokMSA_id:005116 AF013537 unnamed organism. 2.28.1.6.16.014 OTU 4 seqs prokMSA_id:037701 AF323257 Gram negative B4G-1A prokMSA_id:054913 AF323261 Gram negative B5P-1 prokMSA_id:005114 AJ132378 Defluvibacter lusatiae DSM 11099. prokMSA_id:005113 Y15403 Aquamicrobium defluvii DSM 11603. 2.28.1.6.16.015 OTU 1 seq prokMSA_id:005110 AF097813 clone 49519 2.28.1.6.16.016 OTU 1 seq prokMSA_id:005108 U62846 clone RB25. 2.28.1.6.16.019 OTU 1 seq prokMSA_id:021543 AF424270 alpha MERTZ_2CM_44 2.28.1.6.16.020 OTU 2 seqs prokMSA_id:021643 AF194396 Agrobacterium kpc17 prokMSA_id:074699 AY007677 Unknown marine alpha JP66.1 2.28.1.6.16.022 OTU 1 seq prokMSA_id:022289 AF229877 Mesorhizobium sp. 4FB11 2.28.1.6.16.023 OTU 1 seq prokMSA_id:023417 AF434963 sponge symbiont RSWS1 2.28.1.6.16.028 OTU 1 seq prokMSA_id:024325 AF424287 alpha MERTZ_0CM_399 2.28.1.6.16.029 OTU 1 seq prokMSA_id:025284 AJ318163 alpha clone BIri24 2.28.1.6.16.030 OTU 4 seqs prokMSA_id:036326 AB054163 alpha HOC29 prokMSA_id:025420 AF245619 alpha NAC1-6 prokMSA_id:060656 AF406516 alpha clone AEGEAN_108 prokMSA_id:032586 AJ400354 marine ZD0418 2.28.1.6.16.032 OTU 1 seq prokMSA_id:026047 AF424273 alpha MERTZ_2CM_84 2.28.1.6.16.033 OTU 2 seqs prokMSA_id:026653 AF424283 alpha MERTZ_0CM_232 prokMSA_id:027640 AF424290 alpha MERTZ_21CM_100 2.28.1.6.16.034 OTU 1 seq prokMSA_id:027926 AF143828 clone 4-Org2-4 2.28.1.6.16.036 OTU 13 seqs prokMSA_id:028598 AF186702 Phyllobacterium sp. MA2830 prokMSA_id:028434 AF214120 P91650 prokMSA_id:032181 AF214121 P91635 prokMSA_id:021666 AF290483 sheep mite Llangefni 28 prokMSA_id:017238 AF290484 sheep mite Llangefni 18 prokMSA_id:030421 AF290485 sheep mite Llangefni 80 prokMSA_id:024063 AF441726 Alpha Kaza-27 prokMSA_id:005118 AJ011330 Phyllobacterium myrsinacearum str. HM35. prokMSA_id:035523 AJ295441 Rape rhizosphere tsb051 prokMSA_id:005115 D12789 Phyllobacterium myrsinacearum IAM 13584. prokMSA_id:046290 X98249 Phyllobacterium sp. prokMSA_id:005120 X98418 Nanobacterium sanguineum str. Seralab FBS batch 901045. prokMSA_id:005121 X98419 Nanobacterium sp. str. Seralab FBS batch 901045. 2.28.1.6.16.037 OTU 1 seq prokMSA_id:029660 AF190214 Alpha RSHD3S10 2.28.1.6.16.038 OTU 1 seq prokMSA_id:068960 AJ318131 clone BIfdi7 2.28.1.6.16.039 OTU 1 seq prokMSA_id:031507 AF424284 alpha MERTZ_0CM_243 2.28.1.6.16.042 OTU 1 seq prokMSA_id:032816 AF424293 alpha MERTZ_21CM_168 2.28.1.6.16.043 OTU 1 seq prokMSA_id:032831 AF280843 mle1-4 2.28.1.6.16.044 OTU 1 seq prokMSA_id:035051 Y15341 Rhizobium sp. isolate PRLIST04 2.28.1.6.16.045 OTU 1 seq prokMSA_id:038255 AF234706 sludge H9 2.28.1.6.16.046 OTU 1 seq prokMSA_id:039227 AF323256 Gram negative B1G-2 2.28.1.6.16.047 OTU 1 seq prokMSA_id:039309 AF424276 alpha MERTZ_2CM_305 2.28.1.6.16.048 OTU 1 seq prokMSA_id:040511 AF234750 sludge H34 2.28.1.6.16.049 OTU 1 seq prokMSA_id:041538 Y15344 isolate PRLIST07 2.28.1.6.16.050 OTU 1 seq prokMSA_id:044534 Z88572 isolate HNSS21 2.28.1.6.16.051 OTU 1 seq prokMSA_id:046411 AJ318143 alpha clone BIhii25 2.28.1.6.16.052 OTU 1 seq prokMSA_id:047381 AF287025 alpha EC-B2 2.28.1.6.16.053 OTU 1 seq prokMSA_id:048705 AF424269 alpha MERTZ_2CM_19 2.28.1.6.16.054 OTU 1 seq prokMSA_id:048821 AF425762 alpha clone MERTZ_0CM_263 2.28.1.6.16.055 OTU 1 seq prokMSA_id:049166 AF143830 clone 4-Org2-22 2.28.1.6.16.056 OTU 1 seq prokMSA_id:050340 AF321203 alpha rcr_52 2.28.1.6.16.057 OTU 1 seq prokMSA_id:060655 AF406517 alpha clone AEGEAN_155 2.28.1.6.16.058 OTU 2 seqs prokMSA_id:077579 AB098586 Mesorhizobium sp. TUT1018 prokMSA_id:060695 AF534573 Phyllobacteriaceae NL21 2.28.1.6.16.059 OTU 1 seq prokMSA_id:067734 AB062151 clone:pBSB2.30 2.28.1.6.16.060 OTU 1 seq prokMSA_id:068662 AJ439365 alpha LIg-6 isolate LIg-6 2.28.1.6.16.061 OTU 1 seq prokMSA_id:068664 AJ439368 alpha WTs-6 isolate WTs-6 2.28.1.6.16.062 OTU 1 seq prokMSA_id:068665 AJ439367 alpha RIg-11 isolate RIg-11 2.28.1.6.16.064 OTU 101 seqs prokMSA_id:030306 AB074720 Alpha S-N0-17A prokMSA_id:005141 AF034798 str. IMB-1. prokMSA_id:005152 AF041445 Mesorhizobium HL56 str. HL56. prokMSA_id:005146 AF041447 Mesorhizobium tianshanense str. A-1BS USDA 3592. prokMSA_id:005145 AF072542 Pseudaminobacter salicylatoxidans str. BN12. prokMSA_id:005109 AF107722 str. CC495. prokMSA_id:024111 AF150703 Elbe River snow isolate Iso26 prokMSA_id:005129 AF178962 str. WSM1284. prokMSA_id:005131 AF178964 str. WSM1497. prokMSA_id:032754 AF234721 sludge A7 prokMSA_id:031369 AF246220 Pseudaminobacter sp. C147 prokMSA_id:026552 AF250404 Methylotrophic loc440 prokMSA_id:050798 AF250406 Chelatobacter heintzii 435 prokMSA_id:052607 AF256055 Chelatobacter heintzii prokMSA_id:021876 AF279889 Rhizobium sp. H-4 prokMSA_id:037829 AF282922 Mesorhizobium sp. N1 prokMSA_id:042551 AF282923 Mesorhizobium sp. N31 prokMSA_id:039417 AF282925 Mesorhizobium sp. N20 prokMSA_id:022176 AF282926 Mesorhizobium sp. N33 prokMSA_id:030025 AF282927 Mesorhizobium sp. N39 prokMSA_id:041882 AF282929 Mesorhizobium sp. USDA 4003 prokMSA_id:025630 AF325730 Rhizobium sp. N1 prokMSA_id:023504 AF325769 Rhizobium sp. E-13 prokMSA_id:047902 AF325770 Rhizobium sp. TM-5 prokMSA_id:041787 AF329835 Aminobacter aminovorans prokMSA_id:035835 AF345542 Rhizobium sp. SDW010 prokMSA_id:048171 AF345546 Rhizobium sp. SDW017 prokMSA_id:029719 AF345547 Rhizobium sp. SDW018 prokMSA_id:033518 AF345549 Rhizobium sp. SDW040 prokMSA_id:017908 AF359528 Marine ATAM407_68 prokMSA_id:049052 AF377867 clone COX1 small subunit prokMSA_id:050854 AF410895 Mesorhizobium sp. Lo5-9 prokMSA_id:018809 AF410896 Mesorhizobium sp. Lo9-4 prokMSA_id:024617 AF479641 Mesorhizobium sp. Lc3-2 prokMSA_id:082447 AF484595 Mesorhizobium sp. 128a prokMSA_id:081407 AF484596 Mesorhizobium sp. xhj12FR prokMSA_id:055795 AF506051 Pseudaminobacter sp. LCSAOTU18 prokMSA_id:087784 AF509922 Mesorhizobium sp. Wif-1 prokMSA_id:062975 AF526933 Rhizobium sp. clone 84-5 rrn prokMSA_id:049874 AJ007856 Mesorhizobium sp. HN14A16 prokMSA_id:022979 AJ007857 Mesorhizobium sp. HB5A4 prokMSA_id:005107 AJ011759 Aminobacter aminovorans str. TK3001 DSM 7048 . prokMSA_id:005144 AJ011760 Aminobacter aganoensis str. TH-3 DSM 7051 . prokMSA_id:005139 AJ011761 Aminobacter niigataensis str. DM-81 DSM 7050 . prokMSA_id:005140 AJ011762 Chelatobacter heintzii DSM 6450. prokMSA_id:018788 AJ271898 Mesorhizobium amorphae strain rob6 prokMSA_id:045557 AJ271899 Mesorhizobium amorphae strain rob8 prokMSA_id:049290 AJ271900 Mesorhizobium sp. strain rob23 prokMSA_id:031415 AJ278249 Mesorhizobium chacoense strain PR5 prokMSA_id:038141 AJ294416 Pseudaminobacter salicylatoxidans strain KTC001 prokMSA_id:027176 AJ295492 rape rhizosphere wr0034 prokMSA_id:035595 AJ295493 rape rhizosphere wr0035 prokMSA_id:066931 AJ306768 clone SHA-85 prokMSA_id:018750 AJ315351 Mesorhizobium loti strain LMG 17826t1 prokMSA_id:048799 AJ417082 Mesorhizobium sp. Rch-981 isolate Rch-981 prokMSA_id:022616 AJ417083 Mesorhizobium sp. Rch-19B isolate Rch-19B prokMSA_id:036443 AJ417084 Mesorhizobium sp. Rch-7B isolate Rch-7B prokMSA_id:024191 AJ417085 Mesorhizobium sp. Rch-984 isolate Rch-984 prokMSA_id:023612 AJ417087 Mesorhizobium sp. Rch-9815 isolate Rch-9815 prokMSA_id:039581 AJ417089 Mesorhizobium sp. Rch-2B isolate Rch-2B prokMSA_id:023862 AJ417090 Mesorhizobium sp. Rch-10B isolate Rch-10B prokMSA_id:022857 AJ417091 Mesorhizobium sp. Rch-9865 Rch-9865 prokMSA_id:029058 AJ437194 prokMSA_id:068667 AJ439364 alpha SPl-7 isolate SPl-7 prokMSA_id:083392 AJ441009 Antarctic R-9219 strain R-9219 prokMSA_id:066200 AJ487829 Mesorhizobium ciceri strain Rch9816 prokMSA_id:095110 AJ582084 Ahrensia sp. DFL-13 isolate DFL-13 prokMSA_id:094505 AJ582086 Ahrensia sp. DFL-42 isolate DFL-42 prokMSA_id:095153 AJ582087 Ahrensia sp. DFL-44 isolate DFL-44 prokMSA_id:094331 AJ582088 Ahrensia sp. DFL-43 isolate DFL-43 prokMSA_id:057887 AY141983 Mesorhizobium sp. SH2851 prokMSA_id:057886 AY141984 Mesorhizobium sp. SH267neu prokMSA_id:069342 AY147203 Mesorhizobium sp. CCBAU25126 prokMSA_id:082384 AY192040 alpha clone G71-GM4R prokMSA_id:081278 AY192063 alpha clone P42-GM4R-t prokMSA_id:082201 AY195843 Mesorhizobium mediterraneum strain PECA03 prokMSA_id:081838 AY195844 Mesorhizobium mediterraneum strain PECA20 prokMSA_id:081497 AY195845 Mesorhizobium ciceri prokMSA_id:081730 AY195846 Mesorhizobium tianshanense prokMSA_id:081855 AY206686 Mesorhizobium ciceri strain C-2/2 prokMSA_id:081699 AY217118 Mesorhizobium ciceri strain Rcd301 prokMSA_id:092220 AY238500 Mesorhizobium sp. 98_RREM2003 prokMSA_id:085845 AY260148 Sinorhizobium fredii strain SMH13 prokMSA_id:090640 AY307924 Aminobacter sp. COX prokMSA_id:091742 AY331575 Pseudaminobacter sp. mp-1 prokMSA_id:091178 AY345472 K2-76 prokMSA_id:005149 D14511 Rhizobium sp. str. TAL1148. prokMSA_id:005142 D14514 Mesorhizobium loti ATCC 33669 . prokMSA_id:005112 D32248 Pseudaminobacter defluvii str. THI051. prokMSA_id:005138 L20802 str. ER2. prokMSA_id:005157 L38825 Mesorhizobium mediterraneum str. UPM-Ca36. prokMSA_id:005127 U07934 Mesorhizobium ciceri str. UPM-Ca7 ATCC 51585 . prokMSA_id:005153 U50164 Mesorhizobium loti str. R8CS USDA 3467. prokMSA_id:005154 U50165 Mesorhizobium loti str. R88b USDA 3462. prokMSA_id:005125 U50167 Rhizobium CJ2 str. CJ2 S188 USDA 3440. prokMSA_id:005132 U50168 Rhizobium CJ5 str. CJ5 24N USDA 3398. prokMSA_id:005151 X67229 Mesorhizobium loti LMG 6125 . prokMSA_id:005122 X67230 Mesorhizobium loti str. 3F6g2 LMG 4284. prokMSA_id:005155 Y10175 Rhizobium sp. str. CIAM 1414. prokMSA_id:005133 Y11584 str. Mena 25/4-1 DSM 11455. prokMSA_id:005124 Z94817 Mesorhizobium genosp. S str. BDV5911. 2.28.1.6.16.065 OTU 1 seq prokMSA_id:068974 AY033325 alpha MB13F01 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S 2.28.1.6.16.066 OTU 1 seq prokMSA_id:073511 AJ318199 alpha clone BIwii1 2.28.1.6.16.067 OTU 1 seq prokMSA_id:074832 AJ318115 alpha clone BIfci17 2.28.1.6.16.068 OTU 1 seq prokMSA_id:075002 AJ532705 alpha clone JG34-KF-258 2.28.1.6.16.069 OTU 3 seqs prokMSA_id:077907 AY178860 Fulvimarina pelagi strain HTCC2506 prokMSA_id:077696 AY178861 Fulvimarina pelagi strain HTCC2615 prokMSA_id:077742 AY178862 Fulvimarina pelagi strain HTCC2619 2.28.1.6.16.070 OTU 1 seq prokMSA_id:078329 AY171357 clone s52 2.28.1.6.16.071 OTU 1 seq prokMSA_id:079210 AF382114 clone ZA3318c 2.28.1.6.16.072 OTU 1 seq prokMSA_id:079338 AB099936 sequences clone: IheB2-3 2.28.1.6.16.073 OTU 1 seq prokMSA_id:079374 AB100000 sequences clone: IndB1-49 2.28.1.6.16.074 OTU 1 seq prokMSA_id:082325 AY192065 alpha clone PAO-pH7 2.28.1.6.16.075 OTU 1 seq prokMSA_id:082449 AY080990 Aquamicrobium sp. clone ckl28 2.28.1.6.16.076 OTU 1 seq prokMSA_id:083815 AY250863 alpha clone FBP195 2.28.1.6.16.077 OTU 1 seq prokMSA_id:086401 AY177715 Phyllobacteriaceae TK 2.28.1.6.16.078 OTU 1 seq prokMSA_id:087184 AY278875 Mesorhizobium loti 2.28.1.6.16.079 OTU 1 seq prokMSA_id:087891 AY278892 Mesorhizobium sp. T2-26 2.28.1.6.16.080 OTU 1 seq prokMSA_id:092371 AJ581348 alpha clone E01-9C-5 2.28.1.6.16.081 OTU 1 seq prokMSA_id:095259 AY375135 clone D108 2.28.1.6.16.082 OTU 1 seq prokMSA_id:095741 AY375064 clone B94 2.28.1.6.16.999 poor quality 108 seqs prokMSA_id:033239 AB011691 alpha strain: G14021 prokMSA_id:045844 AB011709 alpha strain: G23125 prokMSA_id:049076 AB015965 Mesorhizobium huakuii strain B3 prokMSA_id:074793 AB015966 Mesorhizobium huakuii strain My3 prokMSA_id:050999 AB041290 ECS20 prokMSA_id:075792 AB075085 clone:KCR14 prokMSA_id:076843 AB075120 clone:KSR7 prokMSA_id:076420 AB075121 clone:KSR8 prokMSA_id:095946 AB079791 Oil-susceptible OSB26 prokMSA_id:077879 AB088414 Mesorhizobium sp. NH-14 prokMSA_id:085273 AB106925 Rhizobium sp. MRCD 19 prokMSA_id:023842 AF055235 marine pC2-41 prokMSA_id:017060 AF058378 Phyllobacterium clone MT17 prokMSA_id:021257 AF078189 Grassland soil clone saf1_117 prokMSA_id:020399 AF078247 Grassland soil clone saf2_214 prokMSA_id:043408 AF078277 Grassland soil clone saf3_006 prokMSA_id:033466 AF078304 Grassland soil clone saf3_115 prokMSA_id:045900 AF083596 Amazonian soil P27 prokMSA_id:028252 AF175898 Aquatic RUB_NH4_14 prokMSA_id:005130 AF178963 str. WSM1283. prokMSA_id:073748 AF194395 Agrobacterium sp. kbc06 prokMSA_id:048949 AF216503 alpha HetTri4-79 prokMSA_id:038087 AF216504 alpha Pleur7-x1 prokMSA_id:021021 AF226225 maize root Zmrc200 prokMSA_id:041988 AF231431 Humic substances enrichment clone A24 prokMSA_id:033014 AF234046 #0319-23G12 prokMSA_id:045767 AF250403 Aminobacter sp. D66 prokMSA_id:021488 AF250418 Aminobacter sp. D55 prokMSA_id:049650 AF251774 Manganese-oxidizing Eplume4.J1 prokMSA_id:039777 AF332317 clone T26-30 prokMSA_id:068246 AF365474 clone BM89MF1BF10 prokMSA_id:068186 AF365543 clone BT49MF4BA2 prokMSA_id:068184 AF365544 clone BT49MF4BA3 prokMSA_id:068144 AF365591 clone BT60MF2BB7 prokMSA_id:068111 AF365624 clone BT60MF7BG9 prokMSA_id:049684 AF429067 clone CR99-7-33 prokMSA_id:026221 AF429241 clone CR99-2-55 prokMSA_id:075309 AF431064 alpha clone N11.139WL prokMSA_id:075081 AF431197 alpha clone S51.12PG prokMSA_id:075134 AF431208 alpha clone S52.37PG prokMSA_id:064849 AF434078 alpha clone M1-1-18 prokMSA_id:064848 AF434081 alpha clone M2-1-11 prokMSA_id:064845 AF434084 alpha clone M3-1-33 prokMSA_id:064843 AF434086 alpha clone P1-1-27 prokMSA_id:064840 AF434089 alpha clone S1-1-12 prokMSA_id:064839 AF434090 alpha clone S1-1-13 prokMSA_id:064828 AF434102 alpha clone S5-1-18 prokMSA_id:064827 AF434103 alpha clone M3-1-20 prokMSA_id:064825 AF434104 alpha clone M3-1-23 prokMSA_id:026235 AF460897 Marine SIMO-IS185 prokMSA_id:017974 AF460925 Marine SIMO-IS144 prokMSA_id:022184 AF460926 Marine SIMO-IS145 prokMSA_id:047266 AF460958 Marine SIMO-IS217 prokMSA_id:081145 AF466716 alpha clone DBW4 prokMSA_id:055277 AF466890 alpha isolate DGGE band C31 prokMSA_id:071170 AF466896 alpha isolate DGGE band C'6 prokMSA_id:022359 AF473994 alpha LR-1 prokMSA_id:026346 AF473995 alpha LR-10 prokMSA_id:061148 AF530111 isolate MGP DGGE Band 15A prokMSA_id:070538 AF531014 Alpha zo44 prokMSA_id:078740 AF547039 320 prokMSA_id:046586 AJ232815 clone LBS2 prokMSA_id:018449 AJ311398 maize rhizosphere c12_23 prokMSA_id:073114 AJ311410 maize rhizosphere c12_45 prokMSA_id:032014 AJ311424 maize rhizosphere c10_68 prokMSA_id:072423 AJ319856 SB-44-DB prokMSA_id:072402 AJ319861 SB-13-CS prokMSA_id:072903 AJ400575 clone G4-K7 prokMSA_id:017325 AJ416679 alpha clone env.S135 prokMSA_id:050406 AJ421154 clone C6-K6 prokMSA_id:070467 AJ421155 clone C6-K8 prokMSA_id:071920 AJ431284 clone 1_34 prokMSA_id:070092 AJ437420 clone 1_34_201 prokMSA_id:071822 AJ437423 clone 1_34_211 prokMSA_id:062553 AJ504575 isolate P2CN26 prokMSA_id:087366 AJ561123 alpha clone ANT-RB 20 prokMSA_id:061569 AY043640 alpha clone NOS7.158WL prokMSA_id:061464 AY043764 alpha clone NMS8.116WL prokMSA_id:058025 AY095104 Marine SIMO IS-S76-231 prokMSA_id:071238 AY143746 Hyphomicrobium sp. clone V98 prokMSA_id:082844 AY217457 Alpha WCIP3 prokMSA_id:085373 AY222328 lc10 prokMSA_id:083995 AY222330 lc33 prokMSA_id:084492 AY222332 or09 prokMSA_id:084107 AY222333 or18 prokMSA_id:091180 AY258601 alpha DGGE Band 3 prokMSA_id:091426 AY258606 alpha DGGE Band 8 prokMSA_id:087127 AY278890 Rhizobium sp. T2-23 prokMSA_id:090636 AY323139 alpha clone A115-20 prokMSA_id:098431 AY378202 Extreme arid zone HX-IE63 prokMSA_id:098878 AY378225 Glacial ice ML-E2 prokMSA_id:005158 D12790 Phyllobacterium rubiacearum IAM 13587. prokMSA_id:005143 NONE Rhizobium sp. str. ciam1416.Rhizobium isolate. prokMSA_id:005147 NONE Rhizobium sp. str. 2026.Rhizobium isolate. prokMSA_id:005156 NONE Rhizobium sp. str. 3620.Rhizobium isolate. prokMSA_id:005161 NONE Rhizobium sp. str. ciam0218.Rhizobium isolate. prokMSA_id:005111 NONE Rhizobium sp. str. 3854.Rhizobium isolate. prokMSA_id:005134 S74904 Mesorhizobium tianshanense str. A-1BS CCBAU 3306 . prokMSA_id:005148 U27853 clone pCON7. prokMSA_id:021396 U64002 Rhizobium sp. SCB25 prokMSA_id:005160 X63825 Mesorhizobium loti NZP 2213 . prokMSA_id:005150 X78646 clone SMK271. prokMSA_id:041441 Y10171 Rhizobium sp. strain RH 44 651bp prokMSA_id:037097 Y10172 Rhizobium sp. strain RH 44 508bp prokMSA_id:005119 Y10176 Rhizobium sp. str. CIAM 2927. prokMSA_id:005117 Z77432 str. 1-420 C65. prokMSA_id:035555 Z77558 1-140 C16 prokMSA_id:005128 Z83248 str. KJ3 expressing pSym plasmid. 2.28.1.6.17 MSO.TIANSHANENSE 2 seqs 2.28.1.6.17.001 OTU 1 seq prokMSA_id:005163 AF003376 Rhizobium SH2672 str. SH2672. 2.28.1.6.17.002 OTU 1 seq prokMSA_id:005162 U71079 Mesorhizobium tianshanense str. A-1BS DSM 11417 . 2.28.1.6.18 BRUCELLA_ASSEMBLAGE 232 seqs 2.28.1.6.18.004 OTU 1 seq prokMSA_id:005200 AJ009467 clone SJA-53. 2.28.1.6.18.005 OTU 2 seqs prokMSA_id:005194 AJ223456 str. SS5. prokMSA_id:092662 AY353698 Brucellaceae 47211606 2.28.1.6.18.006 OTU 1 seq prokMSA_id:005190 AF159660 clone HstpL89. 2.28.1.6.18.009 OTU 1 seq prokMSA_id:005180 X54743 Solomonas fluorantheni. 2.28.1.6.18.010 OTU 1 seq prokMSA_id:005172 AF104474 unnamed organism. 2.28.1.6.18.011 OTU 1 seq prokMSA_id:005171 D12786 Mycoplana dimorpha IAM 13154. 2.28.1.6.18.012 OTU 1 seq prokMSA_id:018432 AB079727 Ochrobactrum sp. DASA 35030 2.28.1.6.18.013 OTU 1 seq prokMSA_id:023285 AJ276433 24-D degrading NHG3 strain NHG3 2.28.1.6.18.015 OTU 99 seqs prokMSA_id:063066 AB088543 Ochrobactrum sp. HSH6 prokMSA_id:063061 AB088547 Ochrobactrum sp. LCH3 prokMSA_id:063055 AB088552 Ochrobactrum sp. LCP2 prokMSA_id:059527 AB091758 Ochrobactrum tritici complete prokMSA_id:094870 AB120120 Ochrobactrum anthropi prokMSA_id:059146 AE014457 Brucella suis 1330 chromosome I section 143 of 190 of the complete genome prokMSA_id:056114 AE014476 Brucella suis 1330 chromosome I section 162 of 190 of the complete genome prokMSA_id:058793 AE014604 Brucella suis 1330 chromosome II section 100 of 108 of the complete genome prokMSA_id:005193 AF027600 Brucella B202R str. B202R. prokMSA_id:005203 AF028733 Ochrobactrum 'Relman 1999' str. Relman 1999. prokMSA_id:005191 AF091353 Brucella M2357/93 str. M2357/93. prokMSA_id:005192 AF091354 Brucella abortus str. 544. prokMSA_id:049775 AF220147 Brucella melitensis operon A complete prokMSA_id:018759 AF220148 Brucella melitensis operon B complete prokMSA_id:052507 AF220149 Brucella melitensis operon C complete prokMSA_id:031117 AF229848 Ochrobactrum sp. PR17 complete prokMSA_id:030119 AF229865 Ochrobactrum sp. 2FB10 prokMSA_id:027684 AF229875 Ochrobactrum sp. 4FB9 prokMSA_id:038207 AF229878 Ochrobactrum sp. 4FB12 prokMSA_id:024208 AF229879 Ochrobactrum sp. 4FB13 prokMSA_id:045685 AF229880 Ochrobactrum sp. 4FB14 prokMSA_id:022778 AF229883 Ochrobactrum sp. 3CB4 prokMSA_id:039018 AF229884 Ochrobactrum sp. 3CB5 prokMSA_id:025512 AF309080 Ochrobactrum sp. MB2 prokMSA_id:016724 AF337861 gold mine D6 prokMSA_id:036344 AF337864 gold mine D11 prokMSA_id:037442 AF337885 gold mine D2 prokMSA_id:022536 AF441296 PAH-contaminated sludge PB-1 prokMSA_id:070316 AF452128 Ochrobactrum sp. LMG 20564 prokMSA_id:067340 AF494544 Ochrobactrum sp. BPC6 prokMSA_id:065519 AF501340 Ochrobactrum anthropi strain HAMBI2402 prokMSA_id:066251 AF508089 Ochrobactrum tritici isolate TJ3 prokMSA_id:066248 AF508090 Ochrobactrum tritici isolate TG13 prokMSA_id:056400 AF508091 Ochrobactrum tritici isolate TG23 prokMSA_id:066250 AF508092 Ochrobactrum tritici isolate TG161 prokMSA_id:077381 AF515675 Ochrobactrum sp. YYS-2002 complete prokMSA_id:062917 AF526509 Ochrobactrum intermedium isolate ADV1 prokMSA_id:062916 AF526510 Ochrobactrum intermedium isolate ADV9 prokMSA_id:062912 AF526511 Ochrobactrum intermedium isolate ADV10 prokMSA_id:057487 AF526513 Ochrobactrum intermedium isolate ADV14 prokMSA_id:062908 AF526514 Ochrobactrum intermedium isolate ADV21 prokMSA_id:062909 AF526515 Ochrobactrum intermedium isolate ADV24 prokMSA_id:062907 AF526518 Ochrobactrum anthropi isolate ADV8 prokMSA_id:074565 AF526519 Ochrobactrum anthropi isolate ADV15 prokMSA_id:062906 AF526520 Ochrobactrum anthropi isolate ADV16 prokMSA_id:062899 AF526521 Ochrobactrum anthropi isolate ADV17 prokMSA_id:062902 AF526522 Ochrobactrum anthropi isolate CLF18 prokMSA_id:062900 AF526523 Ochrobactrum anthropi isolate CLF19 prokMSA_id:062901 AF526524 Ochrobactrum anthropi isolate CLF20 prokMSA_id:062898 AF526525 Ochrobactrum anthropi isolate Nimes22 prokMSA_id:062896 AF526526 Ochrobactrum anthropi isolate ADV23 prokMSA_id:005187 AJ002812 Ochrobactrum sp. str. S1. prokMSA_id:048491 AJ242576 Ochrobactrum anthropi strain CLM18 prokMSA_id:005177 AJ242578 Ochrobactrum anthropi str. isolate 1a. prokMSA_id:005178 AJ242579 Ochrobactrum tritici str. LAIII106. prokMSA_id:005179 AJ242580 Ochrobactrum anthropi LMG 5140. prokMSA_id:005165 AJ242581 Ochrobactrum grignonense str. OgA9a. prokMSA_id:005198 AJ242582 Ochrobactrum intermedium str. OiC8-6. prokMSA_id:005199 AJ242583 Ochrobactrum intermedium str. OiC8a. prokMSA_id:005188 AJ242584 Ochrobactrum tritici str. SCII24. prokMSA_id:048126 AJ245941 Ochrobactrum sp. isolate PR17/sat prokMSA_id:049728 AJ249458 Ochrobactrum sp. isolate FRG11/sat prokMSA_id:017058 AJ249459 Ochrobactrum sp. isolate DO23/sat prokMSA_id:005196 AJ249720 Ochrobactrum intermedium str. 609360 I. prokMSA_id:048732 AJ276036 Ochrobactrum anthropi isolate GH 1568 prokMSA_id:072183 AJ415570 Ochrobactrum intermedium strain 0102 808 prokMSA_id:086840 AJ564066 Ochrobactrum sp. M7-4 prokMSA_id:070645 AY040351 Ochrobactrum sp. LMG 20570 prokMSA_id:067353 AY093589 Ochrobactrum intermedium prokMSA_id:072901 AY145561 Alpha AP-24 prokMSA_id:081824 AY217768 Ochrobactrum sp. SP18 prokMSA_id:084368 AY274151 clone D22 prokMSA_id:084513 AY274153 clone D31 prokMSA_id:085838 AY274164 clone D8 prokMSA_id:091304 AY331577 Ochrobactrum sp. mp-3 prokMSA_id:092003 AY331578 Ochrobactrum sp. mp-4 prokMSA_id:091422 AY331579 Ochrobactrum sp. mp-5 prokMSA_id:091199 AY331580 Ochrobactrum sp. mp-6 prokMSA_id:091905 AY331581 Brucella sp. mp-7 prokMSA_id:091812 AY337585 Ochrobactrum intermedium CC-88194 prokMSA_id:091445 AY345515 clone W4A-A02 prokMSA_id:005164 D63836 Ochrobactrum sp. IFO 12950. prokMSA_id:005182 D63837 Ochrobactrum anthropi IFO 13694. prokMSA_id:005175 L26166 Brucella melitensis ATCC 23456 . prokMSA_id:005174 L26167 Brucella melitensis ATCC 23459 . prokMSA_id:005170 L26168 Brucella melitensis ATCC 25840 . prokMSA_id:005169 L26169 Brucella melitensis ATCC 23444 . prokMSA_id:005189 L37584 Brucella melitensis. prokMSA_id:041420 NC_003317 Brucella melitensis chromosome I complete prokMSA_id:044325 NC_003318 Brucella melitensis chromosome II complete prokMSA_id:058651 NC_004310 Brucella suis 1330 chromosome I complete prokMSA_id:058033 NC_004311 Brucella suis 1330 chromosome II complete prokMSA_id:005195 U70978 Ochrobactrum intermedium str. CNS 2-75 LMG 3301 . prokMSA_id:005197 U88440 Ochrobactrum anthropi LMG 3306. prokMSA_id:005183 U88441 Ochrobactrum anthropi LMG 3309. prokMSA_id:005184 U88442 Ochrobactrum anthropi LMG 3310. prokMSA_id:005185 U88443 Ochrobactrum anthropi LMG 3329. prokMSA_id:005186 U88444 Ochrobactrum anthropi LMG 2320. prokMSA_id:005204 X13695 Brucella melitensis str. 11/19. 2.28.1.6.18.016 OTU 1 seq prokMSA_id:030932 AF190209 alpha RS29A8 2.28.1.6.18.017 OTU 1 seq prokMSA_id:033423 AF469340 alpha 33-FL85B00 2.28.1.6.18.018 OTU 1 seq prokMSA_id:037234 AF353236 alpha clone Arctic97A-7 2.28.1.6.18.019 OTU 2 seqs prokMSA_id:038231 AF445695 delta clone SM1G01 prokMSA_id:043604 AF445705 delta clone SM1H08 2.28.1.6.18.020 OTU 1 seq prokMSA_id:038245 AF424296 alpha MERTZ_21CM_293 2.28.1.6.18.021 OTU 1 seq prokMSA_id:038643 Z88576 isolate HOS16 2.28.1.6.18.022 OTU 2 seqs prokMSA_id:058112 AF498711 Ellin329 prokMSA_id:058110 AF498714 Ellin332 2.28.1.6.18.023 OTU 1 seq prokMSA_id:058089 AF498741 Ellin359 2.28.1.6.18.024 OTU 1 seq prokMSA_id:043652 U87509 marine 2.28.1.6.18.025 OTU 1 seq prokMSA_id:050480 AF446345 FL13A05 2.28.1.6.18.026 OTU 1 seq prokMSA_id:055744 AJ430685 Ochrobactrum sp. DA5 strain DA5 2.28.1.6.18.027 OTU 1 seq prokMSA_id:060179 AJ347030 clone TK34 2.28.1.6.18.028 OTU 2 seqs prokMSA_id:060651 AF406521 alpha clone AEGEAN_230 prokMSA_id:060623 AF406553 alpha clone AEGEAN_248 2.28.1.6.18.029 OTU 1 seq prokMSA_id:060654 AF406518 alpha clone AEGEAN_167 2.28.1.6.18.030 OTU 1 seq prokMSA_id:073928 AJ007657 clone 1404-59 2.28.1.6.18.031 OTU 1 seq prokMSA_id:076017 AY159135 MF_clone_23 2.28.1.6.18.032 OTU 1 seq prokMSA_id:076582 AJ519939 Ochrobactrum gallinifaecis 2.28.1.6.18.033 OTU 1 seq prokMSA_id:078025 AB074649 alpha clone:APe2_70 2.28.1.6.18.034 OTU 1 seq prokMSA_id:079545 AF382120 clone ZA3420c 2.28.1.6.18.035 OTU 1 seq prokMSA_id:087564 AJ564065 Ochrobactrum sp. 20-1 2.28.1.6.18.036 OTU 1 seq prokMSA_id:090559 AY328599 HOClCi50 2.28.1.6.18.037 OTU 1 seq prokMSA_id:091010 AY344369 clone K2-30-36 2.28.1.6.18.038 OTU 1 seq prokMSA_id:091562 AY345563 clone T7-2-1C04 2.28.1.6.18.039 OTU 1 seq prokMSA_id:091720 AY345543 clone LWSR-14 2.28.1.6.18.040 OTU 1 seq prokMSA_id:093794 AY360516 clone BSBb1-20/40m 2.28.1.6.18.041 OTU 1 seq prokMSA_id:094969 AB106120 Alpha PWB3 2.28.1.6.18.042 OTU 1 seq prokMSA_id:095046 AY373424 clone A97 complete 2.28.1.6.18.999 poor quality 94 seqs prokMSA_id:005201 AB000476 IFO 13921. prokMSA_id:005202 AB000477 IFO 15648. prokMSA_id:040931 AB041282 ECS13 prokMSA_id:024828 AB070834 Ochrobactrum sp. DASA 35030 prokMSA_id:078403 AB088415 Ochrobactrum anthropi prokMSA_id:091778 AB101564 Brucellaceae GF21 prokMSA_id:074693 AF047640 TRB41 prokMSA_id:025484 AF106618 Ochrobactrum sp. BL200-8 prokMSA_id:044916 AF107534 SY5-6 prokMSA_id:038941 AF175897 Aquatic RUB_NH4_13 prokMSA_id:032426 AF175899 Aquatic RUB_NH4_15 prokMSA_id:045574 AF175901 Aquatic RUB_NH4_7 prokMSA_id:024495 AF175902 Aquatic RUB_NH4_9 prokMSA_id:036661 AF231442 Humic substances enrichment clone D26 prokMSA_id:040941 AF250399 Ochrobactrum sp. C2 prokMSA_id:037745 AF268848 glc5 prokMSA_id:016863 AF273323 IAFESC6 prokMSA_id:039466 AF287028 alpha EC-B90 prokMSA_id:032992 AF302142 Ochrobactrum sp. B33d prokMSA_id:023155 AF337871 gold mine D16 prokMSA_id:068300 AF361667 clone MN12BT3-34 prokMSA_id:068226 AF365497 clone BM89MF5BB2 prokMSA_id:068182 AF365548 clone BT49MF4BA9 prokMSA_id:068169 AF365563 clone BT49MF4BD2 prokMSA_id:052226 AF384177 Ochrobactrum sp. TJ3 prokMSA_id:046973 AF384178 Ochrobactrum sp. TJ32 prokMSA_id:047817 AF384179 Ochrobactrum sp. TG23 prokMSA_id:053358 AF384180 Ochrobactrum sp. TG161 prokMSA_id:042914 AF384181 Ochrobactrum sp. TG13 prokMSA_id:036042 AF390945 clone TFBMC2 prokMSA_id:017180 AF392633 clone LEG10 prokMSA_id:060686 AF406318 alpha clone AEGEAN_107_27F prokMSA_id:060683 AF406323 alpha clone AEGEAN_112_27F prokMSA_id:055378 AF406331 alpha clone AEGEAN_132_27F prokMSA_id:021508 AF406690 Ochrobactrum anthropi strain B23 prokMSA_id:027853 AF424271 alpha MERTZ_2CM_49 prokMSA_id:067636 AF427156 Ochrobactrum sp. 3-2 prokMSA_id:075031 AF431100 alpha clone S21.32WL prokMSA_id:064865 AF434060 alpha clone M2-1-18 prokMSA_id:064862 AF434062 alpha clone M2-2-16 prokMSA_id:064859 AF434066 alpha clone P2-1-32 prokMSA_id:064858 AF434067 alpha clone S4-1-16 prokMSA_id:056722 AF434068 alpha clone S4-1-9 prokMSA_id:064857 AF434069 alpha clone S5-1-12 prokMSA_id:064856 AF434070 alpha clone S5-1-17 prokMSA_id:056387 AF434071 alpha clone S5-1-19 prokMSA_id:064853 AF434072 alpha clone S5-1-37 prokMSA_id:028573 AF440286 clone PO6 prokMSA_id:016307 AF441297 PAH-contaminated sludge PB-2 prokMSA_id:045388 AF441298 PAH-contaminated sludge PB-3 prokMSA_id:046852 AF445140 clone Tc81 prokMSA_id:038849 AF473942 alpha 128-9-11 prokMSA_id:027086 AF479658 240102 prokMSA_id:067104 AF499354 clone JCL9-28 prokMSA_id:067103 AF499355 clone JCL9-44 prokMSA_id:067068 AF499397 clone JCL1-42 prokMSA_id:067067 AF499398 clone JCL1-47 prokMSA_id:067042 AF499425 clone BL-2 prokMSA_id:064748 AF515057 Ochrobactrum sp. BHUAKT2 prokMSA_id:062910 AF526512 Ochrobactrum intermedium isolate ADV11 prokMSA_id:062905 AF526516 Ochrobactrum intermedium isolate ADV3 prokMSA_id:033228 AJ289926 1204-15l prokMSA_id:074322 AJ299579 Ochrobactrum sp. CZ237 isolate CZ237 prokMSA_id:017807 AJ404649 alpha 172-2-1 prokMSA_id:052241 AJ404650 alpha 172-2-2 prokMSA_id:018490 AJ404651 alpha 172-3-2 prokMSA_id:066764 AJ457060 Ochrobactrum sp. EK6 isolate EK6 prokMSA_id:064694 AJ489417 clone NSx2-65 prokMSA_id:057200 AJ518313 clone Neu2P1-13 prokMSA_id:090730 AJ550273 Ochrobactrum sp. TK14 isolate TK14 prokMSA_id:019778 AY038569 alpha clone CD2A10 prokMSA_id:019390 AY039381 Earthworm cast C22D1 prokMSA_id:073997 AY048888 Q3-24C5 prokMSA_id:063020 AY122604 clone OSS-34 prokMSA_id:073589 AY144207 alpha clone LTUA06756 prokMSA_id:079699 AY193100 clone SRA5 prokMSA_id:083598 AY226319 clone DBBB-90 prokMSA_id:087362 AY269233 Ruminococcus productus prokMSA_id:087043 AY283088 alpha clone NS-37 prokMSA_id:090450 AY306219 Ochrobactrum sp. CSL 2573 prokMSA_id:089857 AY306221 Ochrobactrum sp. CSL 2637 prokMSA_id:088843 AY306225 Ochrobactrum sp. CSL 3809 prokMSA_id:090601 AY323187 alpha clone A134-55 prokMSA_id:091228 AY345560 clone T7-1-C04 prokMSA_id:005176 D12794 Ochrobactrum anthropi IAM 14119. prokMSA_id:005168 D13944 Mycoplana ramosa str. IAM 13949. prokMSA_id:005173 U27818 clone pCON47. prokMSA_id:005167 U71004 Ochrobactrum anthropi str. A1/III. prokMSA_id:005166 U71005 Brucella A4/I str. A4/I. prokMSA_id:027786 U87488 marine 5' prokMSA_id:036340 U87496 marine 5' prokMSA_id:035635 U87510 marine 3' prokMSA_id:028755 U87511 marine 5' prokMSA_id:005181 X78651 clone SMK6. 2.28.1.6.19 DG.ZOOGLOEOIDES_SUBGROUP_I 31 seqs 2.28.1.6.19.001 OTU 2 seqs prokMSA_id:071220 AH000031 sp. amplified from marine plankton 5' end clone NH16-2A prokMSA_id:005208 L11960 Pacific Ocean station 16 100m depth clone 2.28.1.6.19.002 OTU 9 seqs prokMSA_id:055816 AF502218 clone HP1B02 prokMSA_id:059345 AF502219 clone HP1B28 prokMSA_id:059332 AF502237 clone HP1U23 prokMSA_id:059330 AF502238 clone HP1U53 prokMSA_id:066289 AF506052 Mesorhizobium sp. LCSAOTU23 prokMSA_id:066900 AJ440749 Gram-negative DM 1 isolate DM 1 prokMSA_id:066898 AJ440750 Gram-negative DM 2 isolate DM 2 prokMSA_id:005205 D14255 Duganella zoogloeoides IAM 12669. prokMSA_id:005207 X74915 Duganella zoogloeoides ATCC 19623. 2.28.1.6.19.003 OTU 3 seqs prokMSA_id:068659 AJ439373 alpha RIg-7 isolate RIg-7 prokMSA_id:056248 AJ456951 Zoogloea sp. RIg-4 isolate RIg-4 prokMSA_id:067412 AJ456952 Zoogloea sp. RTs-2 isolate RTs-2 2.28.1.6.19.004 OTU 1 seq prokMSA_id:032425 AF424281 alpha MERTZ_0CM_187 2.28.1.6.19.005 OTU 1 seq prokMSA_id:033043 AY048887 Q3-24C12 2.28.1.6.19.006 OTU 1 seq prokMSA_id:047066 AF235998 Alpha A0721 2.28.1.6.19.007 OTU 2 seqs prokMSA_id:077636 AB074652 alpha clone:APe9_6 prokMSA_id:077105 AJ518773 alpha clone JG37-AG-96 2.28.1.6.19.999 poor quality 12 seqs prokMSA_id:055792 AB042518 methane-seep sediment SB-10 prokMSA_id:075886 AB075182 clone:TSR1 prokMSA_id:091611 AB101570 Zoogloea sp. GF27 prokMSA_id:072589 AF240143 Grassland soil TSA-18 prokMSA_id:048215 AF268846 glc3 prokMSA_id:051939 AF268857 glc14 prokMSA_id:027010 AF297704 Sinorhizobium terangae prokMSA_id:068007 AF365749 clone BT60DS4BE2 prokMSA_id:058335 AJ489429 clone NS-C7 prokMSA_id:070584 L11961 sp. amplified from marine plankton 3' end clone NH16-2B prokMSA_id:005206 X84630 str. SBR2101. prokMSA_id:018193 Z77585 1-700 C3 2.28.1.6.20 SRH.FREDII_SUBGROUP 215 seqs 2.28.1.6.20.001 OTU 94 seqs prokMSA_id:005232 AF054930 Rhizobium XJ96060 str. XJ96060. prokMSA_id:005233 AF054931 Rhizobium XJ96408 str. XJ96408. prokMSA_id:051125 AF150720 Elbe River snow isolate IsoPLA5 prokMSA_id:005218 AF191738 Ensifer adhaerens ATCC 33499. prokMSA_id:005219 AF191739 Ensifer adhaerens ATCC 33212. prokMSA_id:038465 AF214126 Ensifer sp. P21375 prokMSA_id:036054 AF227753 Sinorhizobium sp. C4 prokMSA_id:021931 AF227754 Sinorhizobium sp. C2 prokMSA_id:037514 AF227755 Sinorhizobium sp. C5 prokMSA_id:042233 AF227756 Sinorhizobium sp. C9 prokMSA_id:020311 AF250353 Sinorhizobium xinjiangensis strain Rx22 prokMSA_id:052806 AF250354 Sinorhizobium xinjiangensis strain CCBAU110 prokMSA_id:032607 AF250355 Sinorhizobium xinjiangensis strain CCBAU830804 prokMSA_id:039113 AF250377 Sinorhizobium xinjiangensis complete prokMSA_id:024151 AF268072 Sinorhizobium sp. 15C-4 prokMSA_id:036972 AF285962 Sinorhizobium sp. S002 prokMSA_id:051380 AF285963 Sinorhizobium sp. S005 prokMSA_id:027872 AF285964 Sinorhizobium sp. S007 prokMSA_id:077951 AF364067 Sinorhizobium kummerowiae prokMSA_id:026173 AF364848 Sinorhizobium sp. L38 97B prokMSA_id:046106 AF364849 Sinorhizobium sp. L 74D prokMSA_id:043191 AF364850 Sinorhizobium sp. L28 86E prokMSA_id:045045 AF364851 Sinorhizobium sp. L38 84B prokMSA_id:052697 AF364852 Sinorhizobium sp. FJ38 37D prokMSA_id:038881 AF364853 Sinorhizobium sp. L38 92 prokMSA_id:044374 AF364857 Sinorhizobium sp. FJ38 32-1-A prokMSA_id:036995 AF423219 soil clone 1306-2 prokMSA_id:016308 AF423281 soil clone 60-2 prokMSA_id:029985 AF445090 clone Tc10 prokMSA_id:069312 AF452129 Sinorhizobium morelense prokMSA_id:055933 AF467359 alpha clone 1576 prokMSA_id:082082 AF484597 Sinorhizobium sp. xhj12s prokMSA_id:082028 AF484598 Sinorhizobium sp. UP27b prokMSA_id:066158 AF506513 Sinorhizobium sp. CFNEI 156 prokMSA_id:087019 AF509931 Sinorhizobium sp. Mes-2 prokMSA_id:061016 AF533684 Sinorhizobium meliloti strain WSM1701 prokMSA_id:061015 AF533685 Sinorhizobium meliloti strain WSM1702 prokMSA_id:005256 AJ004860 Sinorhizobium MSMC310 str. MSMC310. prokMSA_id:005227 AJ004861 Sinorhizobium MSMC411 str. MSMC411. prokMSA_id:036231 AJ012210 Sinorhizobium sp. strain BK1 prokMSA_id:049783 AJ012211 Sinorhizobium sp. strain BK10 prokMSA_id:048966 AJ295071 Sinorhizobium meliloti strain ORS1044 LMG 15285 prokMSA_id:043632 AJ295072 Sinorhizobium sp. RAT902 strain RAT902 R8390 prokMSA_id:025282 AJ295073 Sinorhizobium terangae strain ORS1244 LMG 15317 prokMSA_id:044809 AJ295074 Sinorhizobium terangae strain ORS1082 LMG 15289 prokMSA_id:071225 AJ295075 Sinorhizobium terangae strain ORS1254 LMG 15319 prokMSA_id:039392 AJ295076 Sinorhizobium sp. ORS1231 strain ORS1231 LMG 15307 prokMSA_id:074392 AJ295077 Sinorhizobium sp. ORS1236 strain ORS1236 LMG 18076 prokMSA_id:074439 AJ295078 Sinorhizobium sp. ORS1085 strain ORS1085 LMG 15292 prokMSA_id:016617 AJ298869 Sinorhizobium sp. M3A strain M3A prokMSA_id:018833 AJ300187 Sinorhizobium sp. ORS1873 strain ORS 1873 R2180 prokMSA_id:039445 AJ417086 Sinorhizobium sp. Rch-9868 isolate Rch-9868 prokMSA_id:024812 AJ417088 Sinorhizobium sp. Rch-9813 isolate Rch-9813 prokMSA_id:063199 AJ420773 Sinorhizobium adhaerens strain 5D19 prokMSA_id:063200 AJ420774 Sinorhizobium adhaerens strain HAMBI 1631 prokMSA_id:063196 AJ420775 Sinorhizobium adhaerens strain LMG 20582 prokMSA_id:063195 AJ420776 Sinorhizobium morelense strain LMG 20571 prokMSA_id:064021 AL591782 Sinorhizobium meliloti 1021 complete chromosome; segment 1/12 prokMSA_id:064001 AL591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12 prokMSA_id:063996 AL591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12 prokMSA_id:026055 AY024335 Sinorhizobium morelense complete prokMSA_id:017422 AY027501 Arsenite-oxidizing NT-2 prokMSA_id:041048 AY027502 Arsenite-oxidizing NT-3 prokMSA_id:030671 AY027503 Arsenite-oxidizing NT-4 prokMSA_id:043724 AY034028 Sinorhizobium kummerowiae prokMSA_id:064288 AY040360 Ensifer adhaerens prokMSA_id:027318 AY056832 Sinorhizobium sp. JL84 prokMSA_id:059133 AY148433 Rhizobium sp. AB3 prokMSA_id:059132 AY148434 Rhizobium sp. JH1 prokMSA_id:078604 AY177355 Rhizobium sp. I6 prokMSA_id:081327 AY196140 Sinorhizobium sp. WK6 prokMSA_id:082107 AY196962 Sinorhizobium meliloti strain GVPV12 prokMSA_id:082287 AY196963 Sinorhizobium meliloti strain LMTR32 prokMSA_id:085246 AY260144 Sinorhizobium fredii strain HH003 prokMSA_id:083976 AY260145 Sinorhizobium fredii strain HH103 prokMSA_id:083912 AY260146 Sinorhizobium fredii strain HH303 prokMSA_id:085924 AY260147 Rhizobium sp. NGR234 prokMSA_id:083138 AY260149 Sinorhizobium fredii strain USDA205 prokMSA_id:085533 AY260150 Sinorhizobium fredii strain USDA257 prokMSA_id:090022 AY315655 Sinorhizobium sp. CYR4243 prokMSA_id:005220 D12783 Sinorhizobium meliloti IAM 12611. prokMSA_id:005260 D12796 Sinorhizobium xinjiangensis IAM 14142. prokMSA_id:005245 D14509 Sinorhizobium meliloti IAM 12611. prokMSA_id:005217 D14516 Sinorhizobium fredii ATCC 35423 . prokMSA_id:046924 NC_003047 Sinorhizobium meliloti 1021 complete genomes prokMSA_id:005226 X67222 Sinorhizobium meliloti LMG 6133 . prokMSA_id:005255 X67231 Sinorhizobium fredii LMG 6217 . prokMSA_id:005249 X68387 Sinorhizobium teranga LMG 6463. prokMSA_id:005209 X68388 Sinorhizobium terangae LMG 7834 . prokMSA_id:005210 X68390 Sinorhizobium saheli LMG 7837 . prokMSA_id:047221 Y12350 Rhizobium sp. strain SH215214 prokMSA_id:037618 Y12353 Rhizobium sp. strain JL84 prokMSA_id:005258 Z78203 Sinorhizobium sp. HAMBI 1489. prokMSA_id:005231 Z78204 Sinorhizobium sp. HAMBI 1552. 2.28.1.6.20.002 OTU 7 seqs prokMSA_id:005259 AJ229247 str. KCB90. prokMSA_id:016976 AJ387860 oxSCC-1 prokMSA_id:089687 AY297796 Alpha pACH74 prokMSA_id:090320 AY297800 Alpha pACH79 prokMSA_id:089447 AY297801 Alpha pACH81 prokMSA_id:090170 AY297802 Alpha pACH82 prokMSA_id:089669 AY297803 Alpha pACH83 2.28.1.6.20.003 OTU 1 seq prokMSA_id:005257 AF142922 Rhodobium PENDANT-9. 2.28.1.6.20.004 OTU 1 seq prokMSA_id:005253 X77120 Sinorhizobium saheli LMG 8310. 2.28.1.6.20.005 OTU 1 seq prokMSA_id:005250 AF159656 clone HstpL46. 2.28.1.6.20.006 OTU 1 seq prokMSA_id:005221 X77121 Sinorhizobium meliloti str. 3DOa2 ATCC 9930 . 2.28.1.6.20.007 OTU 1 seq prokMSA_id:005215 X77123 Sinorhizobium fredii ATCC 35423 . 2.28.1.6.20.008 OTU 1 seq prokMSA_id:019385 AJ292610 WD2107 clone WD2107 2.28.1.6.20.009 OTU 1 seq prokMSA_id:034931 AB015420 Sinorhizobium indiaensis strain:Ra-3 2.28.1.6.20.010 OTU 2 seqs prokMSA_id:038715 AF445091 clone Tc11 prokMSA_id:041433 AF445093 clone Tc19 2.28.1.6.20.011 OTU 1 seq prokMSA_id:039851 AF150709 Elbe River snow isolate Iso39 2.28.1.6.20.012 OTU 1 seq prokMSA_id:040615 AF422669 clone d092 2.28.1.6.20.013 OTU 2 seqs prokMSA_id:071591 AF143823 clone 4-Org1-36 prokMSA_id:042517 AF143834 clone 4-Org2-28 2.28.1.6.20.014 OTU 1 seq prokMSA_id:042970 AF418953 clone HTD10 2.28.1.6.20.015 OTU 1 seq prokMSA_id:043818 AF424288 alpha MERTZ_21CM_29 2.28.1.6.20.016 OTU 1 seq prokMSA_id:055704 AY129807 Azospirillum sp. clone GCPF39 2.28.1.6.20.017 OTU 1 seq prokMSA_id:049903 AF445675 alpha clone SM1D09 2.28.1.6.20.018 OTU 1 seq prokMSA_id:054028 AF424295 alpha MERTZ_21CM_255 2.28.1.6.20.019 OTU 1 seq prokMSA_id:063506 AY117669 Rhizobium sp. PRF61 2.28.1.6.20.020 OTU 1 seq prokMSA_id:063510 AY117668 Rhizobium sp. PRF84 complete 2.28.1.6.20.021 OTU 1 seq prokMSA_id:068663 AJ439366 alpha WIg-12 isolate WIg-12 2.28.1.6.20.022 OTU 1 seq prokMSA_id:071380 AF321196 rcr_17 2.28.1.6.20.023 OTU 1 seq prokMSA_id:072411 Y15349 Rhizobium sp. isolate PRLISY04 2.28.1.6.20.024 OTU 1 seq prokMSA_id:074157 AY007683 Unknown marine alpha JP57 2.28.1.6.20.025 OTU 1 seq prokMSA_id:075170 AY154606 earthworm cast clone c252 2.28.1.6.20.026 OTU 1 seq prokMSA_id:077926 AY171378 clone s65 2.28.1.6.20.027 OTU 1 seq prokMSA_id:082550 AY242696 soil clone TcA26 2.28.1.6.20.028 OTU 1 seq prokMSA_id:085103 AY214721 alpha clone SL2-2-E4F 2.28.1.6.20.029 OTU 2 seqs prokMSA_id:089283 AY328640 DSSF17 prokMSA_id:088184 AY328691 DSSF69 2.28.1.6.20.030 OTU 1 seq prokMSA_id:088446 AY316684 Reichenowia ornatae small subunit 2.28.1.6.20.031 OTU 1 seq prokMSA_id:089956 AY316683 Reichenowia parasiticae small subunit 2.28.1.6.20.032 OTU 1 seq prokMSA_id:090540 AY316685 Reichenowia pictae small subunit 2.28.1.6.20.999 poor quality 81 seqs prokMSA_id:041027 AB015421 Sinorhizobium abri strain:HA-1 prokMSA_id:050286 AB054944 Sinorhizobium sp. 1004b prokMSA_id:051621 AB054945 Sinorhizobium sp. 1085 prokMSA_id:071480 AB081583 Rhizobiales str. A4b prokMSA_id:083111 AB097975 Alpha ANRS6-1 prokMSA_id:005228 AF063988 Rhizobium USDA 1079 USDA 1079. prokMSA_id:005229 AF063994 Rhizobium USDA 1953 USDA 1953. prokMSA_id:005230 AF063996 Rhizobium USDA 1970 USDA 1970. prokMSA_id:043035 AF084539 Sinorhizobium meliloti strain RM3166 prokMSA_id:005251 AF084540 Sinorhizobium meliloti str. RM603. prokMSA_id:073451 AF124659 Px2-DGGE band e prokMSA_id:028362 AF214125 Rhizobium sp. P21302 prokMSA_id:045945 AF229863 Ensifer sp. 2FB8 prokMSA_id:037900 AF229872 Ensifer sp. 4FB6 prokMSA_id:021991 AF240481 atmospheric RM3C-1 prokMSA_id:048842 AF240482 atmospheric RM3C-6 prokMSA_id:039378 AF273618 Rhizobiaceae str. DY13 prokMSA_id:047160 AF298836 Sinorhizobium sp. DY11 prokMSA_id:055889 AF365687 clone BT60DS1BB3 prokMSA_id:068045 AF365704 clone BT60DS1BE10 prokMSA_id:018831 AF384182 Ensifer sp. N21 prokMSA_id:029176 AF384183 Ensifer sp. TG12 prokMSA_id:016605 AF384184 Ensifer sp. N3 prokMSA_id:033755 AF384185 Ensifer sp. S4 prokMSA_id:016666 AF384186 Ensifer sp. TG14 prokMSA_id:077246 AF431073 alpha clone N12.48WL prokMSA_id:076394 AF431107 alpha clone S21.56WL prokMSA_id:076672 AF431185 alpha clone C46.21PG prokMSA_id:069736 AF544921 alpha clone 3-6-1 prokMSA_id:078799 AF547037 427 prokMSA_id:005261 AJ238927 Rhizobium sp. str. GR-06. prokMSA_id:027042 AJ295362 Rape rhizosphere cse041 prokMSA_id:071890 AJ295428 Rape rhizosphere tsb025 prokMSA_id:032134 AJ311435 maize rhizosphere c3_68 prokMSA_id:075087 AJ318921 Sinorhizobium sp. MH37 strain MH37 prokMSA_id:048042 AJ421156 clone C6-K16 prokMSA_id:063894 AJ493383 clone m5-2 prokMSA_id:089705 AJ550288 Ensifer adhaerens isolate TK47 prokMSA_id:042394 AY038487 clone CD4H12 prokMSA_id:062290 AY124428 actinobacterium clone SDa02 prokMSA_id:077439 AY138994 alpha pBF16S29 prokMSA_id:077392 AY138996 alpha pBC16S4-42 prokMSA_id:071286 AY145592 alpha clone DC5-80-6 prokMSA_id:075794 AY157120 alpha isolate HS-83 prokMSA_id:077929 AY171313 clone s88 prokMSA_id:078107 AY171373 clone s84 prokMSA_id:080148 AY190151 Sinorhizobium sp. S33 prokMSA_id:080471 AY190161 Sinorhizobium sp. G3 prokMSA_id:080831 AY193037 clone FSA5 prokMSA_id:085651 AY214723 alpha clone SL2-2-C6F prokMSA_id:087279 AY278880 T2-13 prokMSA_id:090534 AY306220 Sinorhizobium sp. CSL 2611 prokMSA_id:089229 AY323142 alpha clone A115-25 prokMSA_id:005222 D12792 Sinorhizobium fredii IAM 13625. prokMSA_id:005252 L20765 Rhizobium tropici str. BR-816. prokMSA_id:005240 M55241 Sinorhizobium meliloti str. 3DOa2 ATCC 9930 . prokMSA_id:005242 M55242 Sinorhizobium meliloti CC 169. prokMSA_id:005212 M55243 Sinorhizobium meliloti CC 2013. prokMSA_id:005244 M55495 Sinorhizobium meliloti NZP 4017. prokMSA_id:005254 M74163 Sinorhizobium fredii USDA 205 . prokMSA_id:005247 NONE Rhizobium sp. str. 1968.Rhizobium isolate. prokMSA_id:005243 NONE Rhizobium sp. str. 1088.Rhizobium isolate. prokMSA_id:005213 NONE Rhizobium sp. str. 1079.Rhizobium isolate. prokMSA_id:005216 NONE Rhizobium sp. str. cc2160.Rhizobium isolate. prokMSA_id:005223 NONE Rhizobium sp. str. 1083.Rhizobium isolate. prokMSA_id:005225 NONE Rhizobium sp. str. cc2155b.Rhizobium isolate. prokMSA_id:005224 NONE Rhizobium sp. str. 1177.Rhizobium isolate. prokMSA_id:005236 NONE Rhizobium sp. str. 1114.Rhizobium isolate. prokMSA_id:005235 NONE Rhizobium sp. str. 1115.Rhizobium isolate. prokMSA_id:005237 NONE Rhizobium sp. str. 1079.Rhizobium isolate. prokMSA_id:005238 NONE Rhizobium sp. str. 1970.Rhizobium isolate. prokMSA_id:005262 NONE Rhizobium sp. str. JL084.Rhizobium isolate. prokMSA_id:044484 U45696 activated sludge CL09 prokMSA_id:034369 U81651 clone vadinBA39 prokMSA_id:005214 X90809 Sinorhizobium sp. str. HAMBI 1392. prokMSA_id:005241 X90810 Sinorhizobium sp. str. HAMBI 1393. prokMSA_id:005246 X90811 Sinorhizobium sp. str. HAMBI 1395. prokMSA_id:005248 X90813 Sinorhizobium sp. str. HAMBI 1496. prokMSA_id:005239 X90814 Sinorhizobium sp. str. HAMBI 1551. prokMSA_id:005234 X90815 Sinorhizobium sp. str. HAMBI 1624. prokMSA_id:005211 X90816 Sinorhizobium sp. str. HAMBI 1698. 2.28.1.6.21 BLB.CAPSULATUS_SUBGROUP 43 seqs 2.28.1.6.21.002 OTU 1 seq prokMSA_id:005266 X73041 Blastobacter aggregatus ATCC 43293 . 2.28.1.6.21.003 OTU 1 seq prokMSA_id:005263 X73042 Blastobacter capsulatus ATCC 43294 . 2.28.1.6.21.005 OTU 18 seqs prokMSA_id:077989 AB074635 alpha clone:APe4_59 prokMSA_id:041912 AF345552 Rhizobium sp. SDW058 prokMSA_id:026697 AF345554 Rhizobium sp. SX211 prokMSA_id:018318 AF349910 Alpha SA-2 prokMSA_id:074374 AF357225 Sinorhizobium sp. 9702-M4 prokMSA_id:016351 AF423251 soil clone 353-2 prokMSA_id:087256 AF510382 Rhizobium sp. Kusp-1 prokMSA_id:086944 AF511492 Rhizobium sp. Aei-5 prokMSA_id:076490 AJ534667 alpha clone S15A-MN24 prokMSA_id:076783 AY064412 Rhizobium sp. DCP2 prokMSA_id:075607 AY064413 Rhizobium sp. DCP3 prokMSA_id:075987 AY064414 Rhizobium sp. DCP1 prokMSA_id:066850 AY096165 clone F2-30 prokMSA_id:078442 AY177365 Rhizobium sp. M16 prokMSA_id:091971 AY341343 Rhizobium daejeonense prokMSA_id:097267 AY427206 Rhizobium sp. NET30 prokMSA_id:005267 U86344 Rhizobium giardinii str. H152. prokMSA_id:049846 Y12351 Rhizobium sp. strain SH21321 2.28.1.6.21.006 OTU 1 seq prokMSA_id:032320 AF441727 Alpha Kaza-29 2.28.1.6.21.007 OTU 1 seq prokMSA_id:046647 AF441730 Alpha Kaza-35 2.28.1.6.21.008 OTU 1 seq prokMSA_id:059901 AY133098 alpha clone ccspost215 2.28.1.6.21.009 OTU 1 seq prokMSA_id:064011 AB087361 clone:F36 2.28.1.6.21.010 OTU 1 seq prokMSA_id:066930 AJ306769 clone SHA-91 2.28.1.6.21.011 OTU 1 seq prokMSA_id:077263 AY154609 earthworm cast clone c255 2.28.1.6.21.999 poor quality 17 seqs prokMSA_id:033206 AF214123 Rhizobium sp. P1G117 prokMSA_id:028596 AF406682 Rhizobium sp. B14 strain B14 prokMSA_id:075724 AF431099 alpha clone S21.13WL prokMSA_id:075413 AF431138 alpha clone N27.54SM prokMSA_id:075829 AF431161 alpha clone S37.13SM prokMSA_id:076806 AF431171 alpha clone N41.139PG prokMSA_id:076670 AF431190 alpha clone C47.10PG prokMSA_id:005268 AJ238926 Rhizobium sp. str. GR-03. prokMSA_id:017523 AJ309916 Rhizobium giardinii strain dtb91 prokMSA_id:027338 AJ311442 maize rhizosphere c9_68 prokMSA_id:063528 AY117612 Rhizobium tropici strain ISP25 prokMSA_id:063526 AY117614 Rhizobium sp. ISP3 prokMSA_id:063524 AY117618 Rhizobium tropici strain ISP59 prokMSA_id:005270 L12054 Rhizobium sp. str. H152. prokMSA_id:005269 L19662 Rhizobium sp. str. H152. prokMSA_id:005265 U12226 str. B0710. prokMSA_id:005264 Z69280 clone JN15d. 2.28.1.6.22 SRH.SP_STR_HAMBI_1492 1 seq 2.28.1.6.22.999 poor quality 1 seq prokMSA_id:005271 X90812 Sinorhizobium sp. str. HAMBI 1492. 2.28.1.6.23 RHB.TROPICI_SUBGROUP 96 seqs 2.28.1.6.23.002 OTU 1 seq prokMSA_id:005290 X77125 Rhizobium tropici LMG 9503 . 2.28.1.6.23.003 OTU 1 seq prokMSA_id:005288 X77127 Rhizobium tropici LMG 10336. 2.28.1.6.23.005 OTU 45 seqs prokMSA_id:029133 AB079726 Rhizobium sp. PDA-1 prokMSA_id:022633 AF083575 Amazonian soil M4c prokMSA_id:036362 AF260274 Rhizobium tropici strain SEMIA 4080 complete prokMSA_id:077281 AF260275 Rhizobium tropici strain PRF54 complete prokMSA_id:042022 AF260279 Rhizobium tropici strain PRSFG 5 prokMSA_id:019935 AF260290 Rhizobium tropici strain PRSFG 23 prokMSA_id:077278 AF260298 Rhizobium tropici strain PRF35 complete prokMSA_id:048684 AF286362 Rhizobium sp. PRY71 prokMSA_id:025018 AF286363 Rhizobium sp. PRY73 prokMSA_id:045501 AF364856 Rhizobium sp. L28 115D prokMSA_id:050447 AF406659 Agrobacterium tumefaciens strain A10-B12 prokMSA_id:024266 AF417562 Rhizobium leguminosarum strain DASA23002 prokMSA_id:047187 AF417563 Rhizobium leguminosarum strain DASA23111 prokMSA_id:017261 AF417564 Rhizobium leguminosarum strain DASA23046 prokMSA_id:048790 AF417565 Rhizobium leguminosarum strain DASA23052 prokMSA_id:036204 AF480572 Rhizobium tropici isolate CFNER90 prokMSA_id:081864 AF484602 Rhizobium sp. 28c prokMSA_id:082010 AF484603 Rhizobium sp. 7b prokMSA_id:087211 AF510368 Rhizobium sp. Glm-10 prokMSA_id:087132 AF510376 Rhizobium sp. Glm-9 prokMSA_id:087904 AF511494 Rhizobium sp. Leb-15 prokMSA_id:086976 AF511502 Rhizobium sp. Aei-3 prokMSA_id:082246 AF514801 Rhizobium sp. ORS214 prokMSA_id:081692 AF514802 Rhizobium sp. ORS217 prokMSA_id:037657 AY038614 clone GL182.23 prokMSA_id:040141 AY038615 clone GL184.11 prokMSA_id:063522 AY117623 Rhizobium tropici strain PRF34 complete prokMSA_id:063521 AY117624 Rhizobium tropici strain PRF93 complete prokMSA_id:063509 AY117667 Rhizobium tropici strain PRF77 complete prokMSA_id:073508 AY117671 Rhizobium tropici strain R05 prokMSA_id:076567 AY166841 Rhizobium tropici UPRM8033 prokMSA_id:082311 AY206687 Rhizobium rhizogenes strain 163C prokMSA_id:005282 D11344 Rhizobium tropici IFO 15247 . prokMSA_id:005289 D12788 Agrobacterium rhizogenes IAM 13570. prokMSA_id:005275 D12798 Rhizobium tropici IAM 14206. prokMSA_id:005281 D14501 Agrobacterium rhizogenes IFO 13257 . prokMSA_id:005283 D14504 Agrobacterium tumefaciens str. K-Ag-3. prokMSA_id:005293 D14505 Agrobacterium tumefaciens str. Ch-Ag-4. prokMSA_id:005280 U38469 Rhizobium tropici. prokMSA_id:005277 U89832 Rhizobium tropici CIAT 899 . prokMSA_id:005273 X67224 Agrobacterium rhizogenes LMG 152. prokMSA_id:005292 X67232 Rhizobium sp. LMG 9509. prokMSA_id:005278 X67233 Rhizobium leguminosarum str. C-O5 LMG 9518. prokMSA_id:005276 X67234 Rhizobium tropici str. IIA LMG 9517. prokMSA_id:005284 Z94806 Rhizobium genosp. Q str. BDV5102. 2.28.1.6.23.006 OTU 1 seq prokMSA_id:005272 X77124 Rhizobium sp. str. BR 8802 LMG 10020. 2.28.1.6.23.007 OTU 1 seq prokMSA_id:093452 AJ581613 alpha clone KCM-C-34 2.28.1.6.23.008 OTU 1 seq prokMSA_id:095247 AY394871 Rhizobium sp. EPR 13 2.28.1.6.23.999 poor quality 46 seqs prokMSA_id:045539 AB069652 Rhizobium sp. JEYF11 prokMSA_id:039527 AB070832 Rhizobium sp. PDA-1 prokMSA_id:052176 AB070833 Rhizobium sp. PDA-2 prokMSA_id:005279 AF000616 Rhizobium tropici str. BDT122. prokMSA_id:038259 AF071120 Rhizobium tropici prokMSA_id:035863 AF083562 Amazonian soil M19a prokMSA_id:021789 AF083582 Amazonian soil M9 prokMSA_id:032719 AF226172 Maize root ZmrIs7 prokMSA_id:021245 AF226203 maize root Zmrc13 prokMSA_id:018954 AF260276 Rhizobium tropici strain PRSFG 1 prokMSA_id:039299 AF260277 Rhizobium tropici strain PRSFG 2 prokMSA_id:047608 AF260278 Rhizobium tropici strain PRSFG 3 prokMSA_id:031793 AF260280 Rhizobium tropici strain PRSFG 7 prokMSA_id:030084 AF260282 Rhizobium tropici strain PRSFG 9 prokMSA_id:050620 AF260284 Rhizobium tropici strain PRSFG 14 prokMSA_id:023443 AF260285 Rhizobium tropici strain PRSFG 15 prokMSA_id:045710 AF260289 Rhizobium tropici strain PRSFG 22 prokMSA_id:030414 AF260292 Rhizobium tropici strain PRSFG 25 prokMSA_id:027410 AF260293 Rhizobium tropici strain PRSFG 26 prokMSA_id:027508 AF260294 Rhizobium tropici strain PRSFG 27 prokMSA_id:026458 AF260296 Rhizobium tropici strain PRSFG 29 prokMSA_id:032278 AF392624 clone CRA1 prokMSA_id:059366 AF466175 Rhizobium tropici strain UPM1154 prokMSA_id:059365 AF466176 Rhizobium tropici strain UPM1150 prokMSA_id:035841 AF480573 Rhizobium tropici isolate CFNEV21 prokMSA_id:067469 AF491934 Rhizobium sp. IRP 132 prokMSA_id:071203 AF498720 Ellin338 prokMSA_id:032521 AJ243129 Agrobacterium rhizogenes strain SA97/5461 prokMSA_id:043112 AJ243130 Agrobacterium rhizogenes strain SA98/1631 prokMSA_id:046998 AJ309913 Rhizobium sp. dtb15 prokMSA_id:061610 AY043584 Forest soil 1S2.C7 prokMSA_id:057776 AY079179 Rhizobium tropici prokMSA_id:063515 AY117622 Rhizobium tropici strain PRF233 prokMSA_id:063507 AY117670 Rhizobium tropici strain R01 prokMSA_id:077408 AY139000 alpha pIC16S3-25 prokMSA_id:077328 AY139003 alpha pIM16S1-55 prokMSA_id:077067 AY159157 MF_isolate_14 prokMSA_id:081835 AY196141 Agrobacterium sp. M7.1 prokMSA_id:089976 AY310320 Agrobacterium rhizogenes IPV-BO 3724/2 prokMSA_id:093391 AY357950 alpha cEV2 prokMSA_id:005287 L20697 Rhizobium tropici str. IIA USDA 2840. prokMSA_id:005285 L21837 Rhizobium tropici str. IIA USDA 9039. prokMSA_id:005291 M55233 Rhizobium tropici CIAT 899 . prokMSA_id:005274 U09271 Rhizobium leguminosarum. prokMSA_id:005286 X63824 Rhizobium sp. str. Leucaena TAL 1145. prokMSA_id:005294 Y11083 Rhizobium sp. str. DUS239. 2.28.1.6.24 RHB.LEGUMINOSARUM_SUBGROUP 247 seqs 2.28.1.6.24.1 RHB.LEGU11_SUBGROUP 131 seqs 2.28.1.6.24.1.002 OTU 1 seq prokMSA_id:005324 X77122 Rhizobium leguminosarum str. 1 LMG 8819. 2.28.1.6.24.1.003 OTU 1 seq prokMSA_id:005304 U89816 Rhizobium mongolense USDA 1832. 2.28.1.6.24.1.004 OTU 1 seq prokMSA_id:059347 AF502221 clone HP1B26 2.28.1.6.24.1.005 OTU 1 seq prokMSA_id:024172 AF345553 Rhizobium sp. SDW062 2.28.1.6.24.1.006 OTU 1 seq prokMSA_id:027535 AF445674 alpha clone SM1D08 2.28.1.6.24.1.007 OTU 1 seq prokMSA_id:029952 AF234689 sludge H6 2.28.1.6.24.1.009 OTU 86 seqs prokMSA_id:005309 AF003375 Rhizobium SH22623 str. SH22623. prokMSA_id:005312 AF008126 Rhizobium gallicum str. CbS-1. prokMSA_id:005313 AF008127 Rhizobium gallicum str. CbS-17. prokMSA_id:005314 AF008128 Rhizobium gallicum str. CbS-18. prokMSA_id:005315 AF008129 Rhizobium gallicum str. FL27. prokMSA_id:005311 AF008130 Rhizobium gallicum str. R602sp. prokMSA_id:005303 AF195031 Rhizobium CCBAU71462 CCBAU 71462. prokMSA_id:047921 AF214124 Rhizobium sp. P1G177 prokMSA_id:041578 AF239242 Rhizobium sp. YAS34 prokMSA_id:029072 AF279266 Rhizobium sp. WSM1583 prokMSA_id:024023 AF313904 Rhizobium etli strain CIAT151 prokMSA_id:032366 AF313905 Rhizobium sp. CIAT613 prokMSA_id:018033 AF313906 Rhizobium sp. CIAT652 prokMSA_id:026893 AF325772 Rhizobium sp. WSM749 prokMSA_id:041100 AF325773 Rhizobium sp. He-853 prokMSA_id:032054 AF345541 Rhizobium sp. ca8593 prokMSA_id:023636 AF345548 Rhizobium sp. SDW024 prokMSA_id:039108 AF345555 Rhizobium sp. X59 prokMSA_id:077604 AF364068 Rhizobium indigoferae prokMSA_id:085234 AF364069 Rhizobium loessense prokMSA_id:026668 AF364854 Rhizobium sp. L38 74A prokMSA_id:021116 AF364855 Rhizobium sp. FJ38 48A prokMSA_id:051455 AF364858 Rhizobium sp. L28 129C prokMSA_id:039270 AF417557 Rhizobium gallicum strain DASA12020 prokMSA_id:020185 AF417560 Rhizobium gallicum strain DASA12023 prokMSA_id:045894 AF417561 Rhizobium gallicum strain DASA12024 prokMSA_id:066287 AF506053 Rhizobium sp. LCSAOTU24 prokMSA_id:087955 AF510369 Rhizobium sp. Glm-12 prokMSA_id:087081 AF510370 Rhizobium sp. Glm-17 prokMSA_id:086997 AF510374 Rhizobium sp. Glm-11 prokMSA_id:087726 AF510385 Rhizobium sp. vgs-10 prokMSA_id:087585 AF510386 Rhizobium sp. vgs-11 prokMSA_id:086899 AF510387 Rhizobium sp. Phr-9 prokMSA_id:087473 AF510388 Rhizobium sp. vgs-5 prokMSA_id:087993 AF510633 Rhizobium sp. Trr-9 prokMSA_id:031634 AY034026 Rhizobium huanglingense strain CCBAU 7190B prokMSA_id:027225 AY034027 Rhizobium indigoferae prokMSA_id:037137 AY034029 Rhizobium huanglingense strain CCBAU 7190B prokMSA_id:048361 AY056831 Rhizobium sp. CA8561 prokMSA_id:063519 AY117629 Rhizobium etli strain PRF51 complete prokMSA_id:063520 AY117630 Rhizobium etli strain PRF230 complete prokMSA_id:063518 AY117632 Rhizobium etli strain PRF76 complete prokMSA_id:063517 AY117636 Rhizobium etli strain PRF164 complete prokMSA_id:063514 AY117660 Rhizobium etli strain PRF126 complete prokMSA_id:063513 AY117661 Rhizobium etli strain PRF246 complete prokMSA_id:063512 AY117663 Sinorhizobium sp. PRF215 complete prokMSA_id:063511 AY117664 Sinorhizobium sp. PRF129 complete prokMSA_id:057888 AY141980 Rhizobium sp. SH445 prokMSA_id:057882 AY141986 Rhizobium sp. SH1718alt prokMSA_id:056641 AY161164 Rhizobium etli prokMSA_id:076536 AY166844 Rhizobium gallicum UPRM8052 prokMSA_id:082161 AY210704 Rhizobium sp. Ad2 prokMSA_id:082038 AY210705 Rhizobium sp. Ak3-1 prokMSA_id:081533 AY210706 Rhizobium sp. Am4-1 prokMSA_id:081629 AY210707 Rhizobium sp. Am4-4 prokMSA_id:081451 AY210709 Rhizobium sp. Dn8-8 prokMSA_id:081330 AY210710 Rhizobium sp. Dz12 prokMSA_id:082352 AY210711 Rhizobium sp. Dz6-14 prokMSA_id:081128 AY210712 Rhizobium sp. Dz6-4 prokMSA_id:081171 AY210713 Rhizobium sp. Dz6-9 prokMSA_id:081786 AY210714 Rhizobium sp. Dz8-2 prokMSA_id:082148 AY210715 Rhizobium sp. Gi7 prokMSA_id:080813 AY221174 Rhizobium etli EBRI 2 prokMSA_id:080573 AY221175 Rhizobium etli EBRI 3 prokMSA_id:079981 AY221176 Rhizobium etli EBRI 21 prokMSA_id:080442 AY221177 Rhizobium etli EBRI 26 prokMSA_id:080113 AY221178 Rhizobium tropici EBRI 32 prokMSA_id:079676 AY221179 Rhizobium etli EBRI 27 prokMSA_id:095920 AY395697 Rhizobium sp. CCBAU 41044 prokMSA_id:005325 D14513 Rhizobium leguminosarum IAM 12609 . prokMSA_id:005330 D14515 Rhizobium sp. str. OK-50. prokMSA_id:005299 U28916 Rhizobium etli CFN 42 . prokMSA_id:005316 U28939 Rhizobium etli str. TAL 182 USDA 9041. prokMSA_id:005301 U47303 Rhizobium etli str. SEMIA 0430 USDA 2667. prokMSA_id:005302 U86343 Rhizobium gallicum str. R602sp. prokMSA_id:005320 U89817 Rhizobium mongolense USDA 1844 . prokMSA_id:005305 U89818 Rhizobium mongolense USDA 1834. prokMSA_id:005306 U89819 Rhizobium mongolense USDA 1836. prokMSA_id:005300 U89820 Rhizobium mongolense USDA 1877. prokMSA_id:005321 U89821 Rhizobium mongolense USDA 1890. prokMSA_id:005322 U89822 Rhizobium mongolense USDA 1929. prokMSA_id:005331 U89823 Rhizobium 'USDA 1920' USDA 1920. prokMSA_id:005308 Y10170 Rhizobium sp. str. IS 123. prokMSA_id:005333 Y10173 Rhizobium sp. str. HCNT 1. prokMSA_id:005332 Y10174 Rhizobium sp. str. CC 1335. prokMSA_id:031903 Y12354 Rhizobium sp. strain IMAP835 2.28.1.6.24.1.010 OTU 1 seq prokMSA_id:038159 AJ271901 Rhizobium sp. strain rob18 2.28.1.6.24.1.011 OTU 1 seq prokMSA_id:049093 AF417558 Rhizobium gallicum strain DASA12005 2.28.1.6.24.1.012 OTU 1 seq prokMSA_id:050117 AB067730 Rhizobium YB4 2.28.1.6.24.1.013 OTU 1 seq prokMSA_id:054457 AF418958 clone HTF1 2.28.1.6.24.1.014 OTU 1 seq prokMSA_id:074262 AF417559 Rhizobium gallicum strain DASA12010 2.28.1.6.24.1.015 OTU 1 seq prokMSA_id:078337 AB074636 alpha clone:APe9_11 2.28.1.6.24.1.016 OTU 1 seq prokMSA_id:090420 AY221596 soil clone HN1-6 2.28.1.6.24.1.017 OTU 1 seq prokMSA_id:091895 AY345411 K2-57B 2.28.1.6.24.1.018 OTU 1 seq prokMSA_id:096825 AY438103 Rhizobium sp. EGY 2.28.1.6.24.1.999 poor quality 30 seqs prokMSA_id:044644 AB069648 Rhizobium sp. JEYF5 prokMSA_id:005307 AF063985 Rhizobium N95 str. N95. prokMSA_id:031893 AF226176 Maize root ZmrIs12 prokMSA_id:040083 AF226253 maize root Zmrc30 prokMSA_id:042045 AF226261 maize root Zmrc7 prokMSA_id:070392 AF325771 Rhizobium sp. WSM746 prokMSA_id:081263 AF529011 Rhizobium gallicum bv. gallicum IE988 prokMSA_id:041326 AJ238928 Rhizobium sp. isolates GR-42 and GR-45 prokMSA_id:046883 AJ299577 Rhizobium sp. CZ68b isolate CZ68b prokMSA_id:039186 AJ413605 Rhizobium gallicum strain dtb49 prokMSA_id:039789 AJ413606 Rhizobium leguminosarum strain dtb22 prokMSA_id:063529 AY117613 Rhizobium gallicum strain ISP26 prokMSA_id:063525 AY117616 Rhizobium gallicum strain ISP39 prokMSA_id:063523 AY117619 Rhizobium gallicum strain ISP66 prokMSA_id:063502 AY117672 Rhizobium sp. R11 prokMSA_id:076482 AY159153 MF_isolate_8 prokMSA_id:079356 AY186809 clone unel11 prokMSA_id:005327 L12053 Rhizobium sp. str. R602. prokMSA_id:005328 L20762 Rhizobium etli str. CFN-265. prokMSA_id:005295 L20763 Rhizobium etli str. CFN-244. prokMSA_id:005310 L20764 Rhizobium etli str. CLI-80. prokMSA_id:005297 M55234 Rhizobium leguminosarum str. FL 27. prokMSA_id:005329 M55235 Rhizobium leguminosarum str. Olivia 4. prokMSA_id:005298 M55236 Rhizobium leguminosarum str. Or191. prokMSA_id:005317 M55240 Rhizobium leguminosarum str. 162Y13. prokMSA_id:005323 M63183 Rhizobium leguminosarum. prokMSA_id:005318 NONE Rhizobium sp. str. Sh19351.Rhizobium isolate. prokMSA_id:005296 NONE Rhizobium sp. str. 2223Rhizobium isolate. prokMSA_id:005326 NONE Rhizobium sp. str. NM095.Rhizobium isolate. prokMSA_id:005319 X84452 str. SBR1005. 2.28.1.6.24.2 RHB.LEGU13_SUBGROUP 106 seqs 2.28.1.6.24.2.007 OTU 52 seqs prokMSA_id:045429 AB054953 Rhizobium sp. 1003 prokMSA_id:005362 AF041443 Rhizobium 'ACCC 19667' ACCC 19667. prokMSA_id:037168 AF214122 Rhizobium sp. P1G115 prokMSA_id:038301 AF282924 Mesorhizobium sp. N36 prokMSA_id:081499 AF484601 Rhizobium sp. SA3 prokMSA_id:087852 AF510377 Rhizobium sp. Trp-6 prokMSA_id:087490 AF510378 Rhizobium sp. Trr-3 prokMSA_id:087807 AF510379 Rhizobium sp. Trr-7 prokMSA_id:087833 AF510380 Rhizobium sp. Trr-1 prokMSA_id:086921 AF510384 Rhizobium sp. Trr-2 prokMSA_id:087615 AF510626 Rhizobium sp. Pis-1 prokMSA_id:087258 AF510627 Rhizobium sp. Viv-1 prokMSA_id:087755 AF510628 Rhizobium sp. Trr-4 prokMSA_id:088041 AF510629 Rhizobium sp. Vif-1 prokMSA_id:088017 AF510630 Rhizobium sp. Trr-5 prokMSA_id:087031 AF510631 Rhizobium sp. Trr-6 prokMSA_id:087112 AF510632 Rhizobium sp. Trr-8 prokMSA_id:087165 AF511490 Rhizobium sp. Trp-2 prokMSA_id:087461 AF511491 Rhizobium sp. Trp-3 prokMSA_id:087341 AF511495 Rhizobium sp. Gls-2 prokMSA_id:087118 AF511499 Rhizobium sp. Trp-4 prokMSA_id:087748 AF511500 Rhizobium sp. Kus-8 prokMSA_id:087278 AF511501 Rhizobium sp. Trp-5 prokMSA_id:087379 AF511505 Rhizobium sp. Crj-3 prokMSA_id:086928 AF511506 Rhizobium sp. Trp-1 prokMSA_id:061021 AF533683 Rhizobium leguminosarum prokMSA_id:005342 AJ238925 Rhizobium sp. str. GR-10. prokMSA_id:021470 AJ252718 Potato plant root clone RC-III-40 prokMSA_id:018988 AY039233 Rhizobium sp. NZN7 prokMSA_id:032813 AY039234 Rhizobium sp. YN9 prokMSA_id:055362 AY141981 Rhizobium sp. SH2742 prokMSA_id:081513 AY196144 Rhizobium sp. m7 prokMSA_id:081359 AY196964 Rhizobium leguminosarum bv. trifolii strain ARPV02 prokMSA_id:081608 AY210708 Rhizobium sp. Db4-14 prokMSA_id:089324 AY315654 Rhizobium sp. HCY1101 prokMSA_id:005338 D12782 Rhizobium leguminosarum IAM 12609 . prokMSA_id:005334 U29386 Rhizobium leguminosarum USDA 2370 . prokMSA_id:005366 U29388 Rhizobium leguminosarum str. RCR 3644 USDA 2671. prokMSA_id:005363 U31074 Rhizobium leguminosarum str. T24. prokMSA_id:005353 U73208 Rhizobium leguminosarum str. Rlt E11. prokMSA_id:005354 U73209 Rhizobium leguminosarum str. Rtl E12. prokMSA_id:005355 U89824 Rhizobium leguminosarum USDA 2377. prokMSA_id:005356 U89825 Rhizobium leguminosarum USDA 2399. prokMSA_id:005357 U89826 Rhizobium leguminosarum USDA 2434. prokMSA_id:005358 U89827 Rhizobium leguminosarum USDA 2443. prokMSA_id:005359 U89828 Rhizobium leguminosarum USDA 2449. prokMSA_id:005360 U89829 Rhizobium leguminosarum USDA 2498. prokMSA_id:005361 U89830 Rhizobium leguminosarum USDA 2501. prokMSA_id:005335 U89831 Rhizobium leguminosarum USDA 2508. prokMSA_id:005352 X67227 Rhizobium leguminosarum LMG 8820 alpha purple . prokMSA_id:005339 X91211 Rhizobium leguminosarum str. OR 191. prokMSA_id:005364 Z94803 Rhizobium genosp. R str. BDV5365. 2.28.1.6.24.2.008 OTU 1 seq prokMSA_id:050238 AB017203 Prosthecomicrobium pneumaticum 2.28.1.6.24.2.009 OTU 1 seq prokMSA_id:065669 AF507720 soil clone S128 2.28.1.6.24.2.999 poor quality 52 seqs prokMSA_id:005344 AB008308 Rhizobium etli str. NOKO-301. prokMSA_id:005380 AB008309 Rhizobium leguminosarum subsp. phaseoli str. NOKO-311. prokMSA_id:005345 AB008310 Rhizobium etli str. NOKO-312. prokMSA_id:005346 AB008311 Rhizobium etli str. NOKO-313. prokMSA_id:005381 AB008312 Rhizobium leguminosarum subsp. phaseoli str. NOKO-314. prokMSA_id:034173 AB015969 Mesorhizobium sp. OUT30019 prokMSA_id:051137 AB069656 Rhizobium sp. EC201-1 prokMSA_id:005367 AF000612 Rhizobium leguminosarum str. COO23. prokMSA_id:005368 AF063978 Rhizobium USDA 2163 USDA 2163. prokMSA_id:005369 AF063979 Rhizobium USDA 2235 USDA 2235. prokMSA_id:005370 AF063980 Rhizobium 2M164 str. 2M164. prokMSA_id:005371 AF063981 Rhizobium USDA 7104 USDA 7104. prokMSA_id:005372 AF063987 Rhizobium USDA 2386 USDA 2386. prokMSA_id:005340 AF071113 Rhizobium etli str. P14N1. prokMSA_id:005341 AF071115 Rhizobium etli str. P90N5. prokMSA_id:005373 AF071117 Rhizobium leguminosarum str. P66N1. prokMSA_id:005374 AF071118 Rhizobium leguminosarum str. P8N1. prokMSA_id:005375 AF071119 Rhizobium leguminosarum str. P8N3. prokMSA_id:041924 AF260287 Rhizobium sp. PRSFG 18 prokMSA_id:065766 AF507610 soil clone C184 prokMSA_id:028463 AJ232795 clone TRE11 prokMSA_id:041014 AJ232796 clone TRE8 prokMSA_id:029138 AJ233491 clone WR194 prokMSA_id:005343 AJ238929 Rhizobium sp. str. GR-84. prokMSA_id:035953 AY037757 earthworm cast clone C155 prokMSA_id:032942 AY039379 Earthworm burrow B2D1 prokMSA_id:074892 AY157116 alpha isolate HS-59 prokMSA_id:083544 AY222325 tr04 prokMSA_id:085632 AY222326 tr12 prokMSA_id:084515 AY222327 tr13 prokMSA_id:083789 AY222331 or01 prokMSA_id:093755 AY364045 Rhizobium sp. clone cRI25c prokMSA_id:098046 AY395102 clone B08R prokMSA_id:005384 M55237 Rhizobium leguminosarum str. 162K10. prokMSA_id:005382 M55238 Rhizobium leguminosarum str. 162K13. prokMSA_id:005383 M55239 Rhizobium leguminosarum str. 162Y10. prokMSA_id:005388 M55494 Rhizobium leguminosarum ATCC 8002. prokMSA_id:005387 NONE Rhizobium sp. str. 2370.Rhizobium isolate. prokMSA_id:005337 NONE Rhizobium sp. str. 2m16+4.Rhizobium isolate. prokMSA_id:005386 NONE Rhizobium sp. str. 2386.Rhizobium isolate. prokMSA_id:005385 NONE Rhizobium sp. str. 2163.Rhizobium isolate. prokMSA_id:005365 NONE Rhizobium sp. str. 7104.Rhizobium isolate. prokMSA_id:005350 NONE Rhizobium sp. str. ciam1125.Rhizobium isolate. prokMSA_id:005349 NONE Rhizobium sp. str. 2235.Rhizobium isolate. prokMSA_id:005348 NONE Rhizobium sp. str. ciam1146.Rhizobium isolate. prokMSA_id:005347 NONE Rhizobium sp. str. 2061.Rhizobium isolate. prokMSA_id:005336 U08100 Rhizobium leguminosarum. prokMSA_id:005351 U08101 Rhizobium leguminosarum. prokMSA_id:005378 U72626 Rhizobium leguminosarum str. H1M2b. prokMSA_id:005379 U72627 Rhizobium leguminosarum str. H1L27b. prokMSA_id:005376 U76341 Rhizobium leguminosarum str. ANU843. prokMSA_id:005377 U76342 Rhizobium leguminosarum str. BCSC826. 2.28.1.6.24.3 RHB.SP3618_SUBGROUP 10 seqs 2.28.1.6.24.3.001 OTU 4 seqs prokMSA_id:024692 AB069724 Rhizobium sp. AC100 prokMSA_id:087139 AF511493 Rhizobium sp. Aei-4 prokMSA_id:041445 AJ271902 Rhizobium sp. strain rob20 prokMSA_id:005389 U29387 Rhizobium sp. str. RCR 3618D USDA 2947. 2.28.1.6.24.3.999 poor quality 6 seqs prokMSA_id:019056 AF083583 Amazonian soil P11 prokMSA_id:019009 AF083609 Amazonian soil P7 prokMSA_id:045203 AF226173 Maize root ZmrIs8 prokMSA_id:005391 U58344 str. E-43. prokMSA_id:005390 U58347 str. EE-34. prokMSA_id:005392 U58350 str. L-85. 2.28.1.6.25 RHB.HAINANENSE 1 seq 2.28.1.6.25.001 OTU 1 seq prokMSA_id:005393 U71078 Rhizobium hainanense str. I66 CCBAU 57015 . 2.28.1.6.26 AGROBACTERIUM_SUBGROUP 378 seqs 2.28.1.6.26.1 DV.RIBOFLAVINA_SUBGROUP 96 seqs 2.28.1.6.26.1.001 OTU 1 seq prokMSA_id:005403 AJ229177 clone BSV03. 2.28.1.6.26.1.002 OTU 1 seq prokMSA_id:005397 AF001764 clone RF32. 2.28.1.6.26.1.003 OTU 4 seqs prokMSA_id:065515 AF501346 Devosia riboflavina strain HAMBI2401 prokMSA_id:038183 AJ252705 Potato plant root clone RC-III-1 prokMSA_id:031842 AJ252707 Potato plant root clone RC-III-5 prokMSA_id:005396 D49423 Devosia riboflavina str. Foster 4R3337 IFO 13584 . 2.28.1.6.26.1.004 OTU 1 seq prokMSA_id:019085 AJ318134 alpha clone BIfdii32 2.28.1.6.26.1.005 OTU 3 seqs prokMSA_id:050645 AJ278784 strain R7951 prokMSA_id:077748 AY178863 Fulvimarina litoralis strain HTCC2156 prokMSA_id:019620 U53824 Manganese-oxidizing SI85-9A1 2.28.1.6.26.1.006 OTU 1 seq prokMSA_id:021290 AJ252656 Agricultural soil clone SC-I-78 2.28.1.6.26.1.007 OTU 2 seqs prokMSA_id:057724 AF469072 Devosia neptuniae strain J1 prokMSA_id:023947 AJ252721 Potato plant root clone RC-III-45 2.28.1.6.26.1.008 OTU 1 seq prokMSA_id:031502 AY048890 L3-17C4 2.28.1.6.26.1.009 OTU 1 seq prokMSA_id:032983 AJ252702 Rhizosphere soil clone RSC-II-92 2.28.1.6.26.1.010 OTU 1 seq prokMSA_id:043964 AF190222 Alpha RSppiC2 2.28.1.6.26.1.011 OTU 1 seq prokMSA_id:061821 AF529343 alpha clone CLi8 2.28.1.6.26.1.012 OTU 1 seq prokMSA_id:062651 AF515494 clone 1D7 2.28.1.6.26.1.013 OTU 1 seq prokMSA_id:064044 AB087326 clone:CF84 2.28.1.6.26.1.014 OTU 1 seq prokMSA_id:066527 AY100556 clone cvf67053 2.28.1.6.26.1.015 OTU 1 seq prokMSA_id:071382 AF317355 feedlot manure A6 2.28.1.6.26.1.016 OTU 2 seqs prokMSA_id:075186 AJ532704 alpha clone JG34-KF-245 prokMSA_id:084082 AY221056 clone CCM21a 2.28.1.6.26.1.017 OTU 1 seq prokMSA_id:072877 AJ318111 alpha clone BIci23 2.28.1.6.26.1.019 OTU 1 seq prokMSA_id:076046 AJ532706 alpha clone JG34-KF-349 2.28.1.6.26.1.020 OTU 1 seq prokMSA_id:077616 AB089085 alpha clone:Rs-B50 2.28.1.6.26.1.021 OTU 1 seq prokMSA_id:078302 AB074628 alpha clone:APe4-61 2.28.1.6.26.1.022 OTU 1 seq prokMSA_id:078324 AB089090 alpha clone:Rs-D84 2.28.1.6.26.1.023 OTU 1 seq prokMSA_id:078389 AB089095 alpha clone:Rs-J48 2.28.1.6.26.1.025 OTU 6 seqs prokMSA_id:074842 AF445680 alpha clone SM1E02 prokMSA_id:080871 AF468359 Arctic sea ice ARK10037 prokMSA_id:081269 AJ548823 Candidatus devosia euplotis strain CO prokMSA_id:082396 AJ548824 Candidatus devosia euplotis strain CAMP4.4 prokMSA_id:082418 AJ548825 Candidatus devosia euplotis strain LIV5 prokMSA_id:097941 AY378281 Permafrost DT-IIK28 2.28.1.6.26.1.026 OTU 1 seq prokMSA_id:084123 AY239006 Marine HP22 2.28.1.6.26.1.027 OTU 1 seq prokMSA_id:084242 AJ440974 Antarctic R-10753 strain R-10753 2.28.1.6.26.1.028 OTU 1 seq prokMSA_id:089526 AY315165 Glacier FXI5 2.28.1.6.26.1.029 OTU 2 seqs prokMSA_id:092761 AY354142 clone pIR3BE11 prokMSA_id:092856 AY354161 clone pIR3BF07 2.28.1.6.26.1.030 OTU 1 seq prokMSA_id:093573 AJ581588 alpha clone KCM-B-33 2.28.1.6.26.1.999 poor quality 55 seqs prokMSA_id:036212 AB006037 Agrobacterium sp. prokMSA_id:042433 AB054950 Pseudomonas sp. 1280 prokMSA_id:076055 AB075171 clone:TSS8 prokMSA_id:064051 AB087318 clone:CF47 prokMSA_id:064046 AB087321 clone:CF50 prokMSA_id:064036 AB087334 clone:F24 prokMSA_id:064032 AB087340 clone:F4 prokMSA_id:064024 AB087347 clone:F5 prokMSA_id:045170 AF023049 Treponema sp. VIII:23:394 prokMSA_id:005404 AF025326 str. KAT13. prokMSA_id:033929 AF078212 Grassland soil clone saf1_309 prokMSA_id:005400 AF078292 unnamed organism. prokMSA_id:005399 AF078301 unnamed organism. prokMSA_id:038302 AF078302 Grassland soil clone saf3_113 prokMSA_id:047384 AF078311 Grassland soil clone saf3_123 prokMSA_id:005398 AF078374 unnamed organism. prokMSA_id:005401 AF078386 unnamed organism. prokMSA_id:071379 AF097809 clone 49515 prokMSA_id:071895 AF097816 clone 49521 prokMSA_id:071667 AF097821 clone 49526 prokMSA_id:043591 AF097823 clone 49529 prokMSA_id:023666 AF289910 alpha Kmlps6-15 prokMSA_id:042411 AF321198 rcr_23 prokMSA_id:052787 AF321201 alpha rcr_48 prokMSA_id:028609 AF379026 clone EV12 prokMSA_id:076875 AF431058 alpha clone N11.117WL prokMSA_id:075396 AF431126 alpha clone N26.142SM prokMSA_id:065768 AF507607 soil clone C178 prokMSA_id:072504 AJ308279 unknown parbacterium clone F99_17 prokMSA_id:038118 AJ311399 maize rhizosphere c13_23 prokMSA_id:050191 AJ311403 maize rhizosphere c18_23 prokMSA_id:050013 AJ311414 maize rhizosphere c15-3_45 prokMSA_id:069830 AJ311416 maize rhizosphere c17_45 prokMSA_id:074063 AJ318174 alpha clone BIsi39 prokMSA_id:061729 AJ416204 clone Sta2-10 prokMSA_id:061722 AJ416217 clone Sta3-02 prokMSA_id:074416 AJ431326 clone 2_9 prokMSA_id:080355 AJ437135 clone lf7-01 prokMSA_id:072073 AJ437437 clone 1_34_122 prokMSA_id:071335 AJ437440 clone 1_34_402 prokMSA_id:062574 AJ504546 isolate P1CN92 prokMSA_id:094241 AJ582573 clone G6 prokMSA_id:061586 AY043618 alpha clone NOW2.72WL prokMSA_id:042936 AY048896 L11-23hw11 prokMSA_id:017458 AY048901 L11-23hw16c prokMSA_id:050618 AY048908 L10-22hw7 prokMSA_id:076708 AY065627 Aurantimonas coralicida strain WP1 prokMSA_id:069170 AY143751 Devosia sp. clone Lur4 prokMSA_id:056798 AY149793 alpha SIMO CL-S29-33 prokMSA_id:075620 AY157109 alpha isolate HS-89 prokMSA_id:093572 AY364051 alpha clone cRI44c prokMSA_id:098044 AY378235 Glacial ice MS-T10-07 prokMSA_id:005395 D26263 soil from soybean field clone FIE11. prokMSA_id:005394 U27846 clone pCON19. prokMSA_id:026477 U63957 Zoogloea sp. 2.28.1.6.26.2 LIB.SP_SUBGROUP 6 seqs 2.28.1.6.26.2.001 OTU 3 seqs prokMSA_id:005407 AB008366 Liberobacter sp. str. Okinama. prokMSA_id:041828 AB038369 Liberobacter endosymbiont of Diaphorina citri prokMSA_id:080801 AY192576 Candidatus Liberibacter asiaticus 2.28.1.6.26.2.002 OTU 1 seq prokMSA_id:005405 L22533 Liberobacter sp. str. Nelspruit. 2.28.1.6.26.2.999 poor quality 2 seqs prokMSA_id:028709 AF137368 Liberibacter africanus subsp. capensis prokMSA_id:005406 L22532 Liberobacter sp. str. Poona. 2.28.1.6.26.3 AG.TUMEFACIENS_SUBGROUP 201 seqs 2.28.1.6.26.3.012 OTU 1 seq prokMSA_id:068455 AF459798 Symbiont cf. Rhizobium of Acromyrmex octospinosus 2.28.1.6.26.3.016 OTU 136 seqs prokMSA_id:077622 AB074597 alpha clone:APe4_7 prokMSA_id:091417 AB102732 Agrobacterium tumefaciens operon genes tRNA-Ile tRNA-Ala 23S 5S tRNA-Met complete prokMSA_id:091604 AB102733 Agrobacterium tumefaciens rrnB operon genes tRNA-Ile tRNA-Ala 23S 5S tRNA-Met complete prokMSA_id:091781 AB102734 Agrobacterium tumefaciens rrnC operon genes tRNA-Ile tRNA-Ala 23S 5S tRNA-Met complete prokMSA_id:091034 AB102735 Agrobacterium tumefaciens rrnD operon genes tRNA-Ile tRNA-Ala 23S 5S tRNA-Met complete prokMSA_id:053312 AE007947 Agrobacterium tumefaciens str. C58 circular chromosome section 5 of 254 of the complete prokMSA_id:032570 AE008167 Agrobacterium tumefaciens str. C58 circular chromosome section 225 of 254 of the complete prokMSA_id:044308 AE008265 Agrobacterium tumefaciens str. C58 linear chromosome section 69 of 187 of the complete prokMSA_id:044698 AE008290 Agrobacterium tumefaciens str. C58 linear chromosome section 94 of 187 of the complete prokMSA_id:045881 AE008980 Agrobacterium tumefaciens strain C58 circular chromosome section 6 of 256 of the complete prokMSA_id:043713 AE009201 Agrobacterium tumefaciens strain C58 circular chromosome section 227 of 256 of the complete prokMSA_id:027184 AE009324 Agrobacterium tumefaciens str. C58 linear chromosome section 94 of 187 of the complete prokMSA_id:049778 AE009348 Agrobacterium tumefaciens str. C58 linear chromosome section 118 of 187 of the complete prokMSA_id:005424 AF003374 Rhizobium SH19312 str. SH19312. prokMSA_id:047329 AF190213 Alpha RSHD3S8 prokMSA_id:005421 AF195069 Rhizobium N220 str. N220. prokMSA_id:022577 AF214119 Agrobacterium sp. P1G127 prokMSA_id:022329 AF239847 Bradyrhizobium japonicum PRY62 complete prokMSA_id:047953 AF239848 Bradyrhizobium japonicum PRY65 complete prokMSA_id:077462 AF271637 Rhizobium sp. IRBG 74 prokMSA_id:070205 AF316615 Agrobacterium albertimagni complete prokMSA_id:044219 AF345545 Rhizobium sp. NM349 prokMSA_id:035890 AF345550 Rhizobium sp. SDW052 prokMSA_id:054782 AF364836 Rhizobium sp. IRBG 74 clone 1 and -23S intergenic spacer prokMSA_id:053410 AF364837 Rhizobium sp. IRBG 74 clone 8 and -23S intergenic spacer prokMSA_id:053665 AF364838 Rhizobium sp. IRBG 74 clone 3 and -23S intergenic spacer prokMSA_id:054011 AF364839 Rhizobium sp. IRBG 74 clone 20 and -23S intergenic spacer prokMSA_id:045314 AF375849 Agrobacterium sp. E1+1 prokMSA_id:032821 AF388030 Agrobacterium tumefaciens strain 42 prokMSA_id:029220 AF388033 Agrobacterium tumefaciens strain 52 prokMSA_id:027903 AF406664 Agrobacterium tumefaciens strain A15 prokMSA_id:038391 AF417566 Rhizobium galegae strain DASA12028 prokMSA_id:050969 AF422639 clone d028 prokMSA_id:026211 AF422644 clone d035 prokMSA_id:044538 AF422650 clone d041 prokMSA_id:066958 AF482682 Agrobacterium sp. PB prokMSA_id:082445 AF484599 Rhizobium sp. 66a1t1 prokMSA_id:082368 AF484600 Rhizobium sp. UP26b prokMSA_id:067584 AF493975 Rhizobium sp. 9313c4 prokMSA_id:065517 AF501343 Agrobacterium tumefaciens strain HAMBI2405 prokMSA_id:066249 AF508093 Agrobacterium tumefaciens isolate C4 prokMSA_id:066246 AF508094 Agrobacterium tumefaciens isolate TJ6 prokMSA_id:066247 AF508095 Agrobacterium tumefaciens isolate N3 prokMSA_id:066245 AF508096 Agrobacterium tumefaciens isolate N21 prokMSA_id:066244 AF508097 Agrobacterium tumefaciens isolate S4 prokMSA_id:055671 AF508098 Agrobacterium tumefaciens isolate TG12 prokMSA_id:056300 AF508099 Agrobacterium tumefaciens isolate TG14 prokMSA_id:088011 AF510371 Rhizobium sp. Glm-14 prokMSA_id:087054 AF510372 Rhizobium sp. Glm-13 prokMSA_id:087877 AF510373 Rhizobium sp. Glm-16 prokMSA_id:087790 AF510375 Rhizobium sp. Glm-15 prokMSA_id:087284 AF510381 Rhizobium sp. Kus-7 prokMSA_id:087063 AF510383 Rhizobium sp. Aei-6 prokMSA_id:087015 AF510634 Rhizobium sp. Phr-8 prokMSA_id:087729 AF511496 Rhizobium sp. Gls-4 prokMSA_id:087962 AF511498 Rhizobium sp. NK-4 prokMSA_id:087376 AF511503 Rhizobium sp. Gls-5 prokMSA_id:087371 AF511504 Rhizobium sp. Crj-4 prokMSA_id:062396 AF529121 alpha clone FTLM218 prokMSA_id:060998 AF531767 Agrobacterium tumefaciens prokMSA_id:005419 AJ004859 Agrobacterium MSMC211 str. MSMC211. prokMSA_id:024597 AJ012209 Agrobacterium tumefaciens strain C58 prokMSA_id:005425 AJ130719 Agrobacterium radiobacter LMG 383. prokMSA_id:005426 AJ130720 Agrobacterium sp. LMG 11915. prokMSA_id:005427 AJ130721 Agrobacterium sp. LMG 11936. prokMSA_id:044817 AJ252708 Potato plant root clone RC-III-6 prokMSA_id:017932 AJ252711 Potato plant root clone RC-III-10 prokMSA_id:018020 AJ252715 Potato plant root clone RC-III-22 prokMSA_id:033481 AJ252717 Potato plant root clone RC-III-33 prokMSA_id:052767 AJ295444 Rape rhizosphere tsb056 prokMSA_id:052570 AJ295445 Rape rhizosphere tsb058 prokMSA_id:044165 AJ295674 Agrobacterium sp. IrT-JG14-24 prokMSA_id:037624 AJ295675 Agrobacterium sp. IrT-JG14-14 prokMSA_id:049700 AJ295676 Agrobacterium sp. IrT-JG14-33 prokMSA_id:026338 AJ295683 Agrobacterium tumefaciens strain IrT-JG-6 prokMSA_id:016302 AJ389886 Agrobacterium tumefaciens strain CFBP2712 prokMSA_id:019912 AJ389887 Agrobacterium tumefaciens strain CFBP2885 prokMSA_id:020046 AJ389888 Agrobacterium tumefaciens strain CFBP2654 prokMSA_id:043693 AJ389889 Agrobacterium tumefaciens strain CFBP2655 prokMSA_id:030092 AJ389890 Agrobacterium tumefaciens strain CFBP2717 prokMSA_id:049219 AJ389891 Agrobacterium tumefaciens strain CFBP2714 prokMSA_id:028007 AJ389892 Agrobacterium tumefaciens strain CFBP2879 prokMSA_id:017155 AJ389893 Agrobacterium tumefaciens strain CFBP2243 prokMSA_id:045163 AJ389894 Agrobacterium tumefaciens strain CFBP2884 prokMSA_id:052254 AJ389895 Agrobacterium tumefaciens strain S56 prokMSA_id:017589 AJ389896 Agrobacterium tumefaciens strain S377 prokMSA_id:042402 AJ389897 Agrobacterium tumefaciens strain CIP111-78 prokMSA_id:029367 AJ389898 Agrobacterium tumefaciens strain CIP127-76 prokMSA_id:040914 AJ389899 Agrobacterium tumefaciens strain CIP28-75 prokMSA_id:019718 AJ389900 Agrobacterium tumefaciens strain CIP43-76 prokMSA_id:024608 AJ389901 Agrobacterium tumefaciens strain Zutra3-1 prokMSA_id:026040 AJ389902 Agrobacterium tumefaciens strain NCPPB1641 prokMSA_id:041643 AJ389903 Agrobacterium tumefaciens strain RV3 prokMSA_id:051761 AJ389904 Agrobacterium radiobacter strain ATCC19358 prokMSA_id:034745 AJ389905 Agrobacterium tumefaciens strain Mushin6 prokMSA_id:036496 AJ389906 Agrobacterium tumefaciens strain ICPB T37 prokMSA_id:050078 AJ389907 Agrobacterium tumefaciens strain 0362 prokMSA_id:031517 AJ389908 Agrobacterium tumefaciens strain O363 prokMSA_id:027851 AJ389909 Agrobacterium tumefaciens strain Zutra F/1 prokMSA_id:044848 AJ417902 Agrobacterium sp. TSJ3 strain TSJ3 prokMSA_id:075548 AJ532682 alpha clone Gitt-KF-163 prokMSA_id:078411 AJ534856 Agrobacterium sp. DW79 isolate DW79 prokMSA_id:093708 AJ581934 Agrobacterium tumefaciens strain 1Pe2-5 prokMSA_id:037752 AY027505 Arsenite-oxidizing BEN-5 prokMSA_id:036063 AY029336 Rhizobium sp. GH-2001 prokMSA_id:063604 AY043382 Agrobacterium tumefaciens prokMSA_id:056163 AY133103 alpha clone ccspost2147 prokMSA_id:059889 AY133104 alpha clone ccspost2181 prokMSA_id:057883 AY141985 Rhizobium sp. SH1707neu prokMSA_id:083717 AY174112 Agrobacterium sp. JS71 prokMSA_id:079507 AY187915 clone V3 prokMSA_id:081672 AY210716 Rhizobium sp. Ho-1 prokMSA_id:079849 AY221180 Agrobacterium tumefaciens EBRI 20 prokMSA_id:080249 AY221181 Agrobacterium tumefaciens EBRI 25 prokMSA_id:085958 AY242687 soil clone Tc133-100 prokMSA_id:082847 AY244983 rumen clone BS32 prokMSA_id:092988 AY353708 Azotobacter chroococcum prokMSA_id:094089 AY364329 Agrobacterium tumefaciens strain UP-3 prokMSA_id:095756 AY379979 Agrobacterium sp. AHL 7 prokMSA_id:095229 AY395023 alpha clone NAB19 prokMSA_id:005420 D12784 Agrobacterium tumefaciens IAM 13129. prokMSA_id:005414 D12787 Agrobacterium rubi IAM 13569 . prokMSA_id:005417 D13294 Agrobacterium tumefaciens IAM 14141. prokMSA_id:005415 D13943 Agrobacterium tumefaciens str. IAM 13558. prokMSA_id:005418 D14500 Agrobacterium tumefaciens NCPPB 2437 . prokMSA_id:005409 D14503 Agrobacterium rubi IFO 13261 . prokMSA_id:005428 D14506 Agrobacterium tumefaciens NCPPB 1650. prokMSA_id:005410 M11223 Agrobacterium tumefaciens ATCC 4720 alpha purple . prokMSA_id:041750 NC_003062 Agrobacterium tumefaciens strain C58 circular chromosome complete prokMSA_id:053840 NC_003304 Agrobacterium tumefaciens str. C58 U. Washington chromosome circular complete prokMSA_id:042673 NC_003305 Agrobacterium tumefaciens str. C58 U. Washington chromosome linear complete prokMSA_id:005413 X67223 Agrobacterium tumefaciens str. ICPB TT111 LMG 196. prokMSA_id:005430 X67228 Agrobacterium rubi LMG 156 . prokMSA_id:005423 Y10169 Rhizobium sp. str. Esparseta 3. prokMSA_id:005412 Z29621 Azospirillum sp. str. A1-3 DSM 1726. prokMSA_id:005416 Z30542 Agrobacterium sp. str. AF3.10. 2.28.1.6.26.3.017 OTU 1 seq prokMSA_id:060853 AY135924 clone SG2-127 2.28.1.6.26.3.018 OTU 1 seq prokMSA_id:064043 AB087327 clone:CF85 2.28.1.6.26.3.019 OTU 1 seq prokMSA_id:093451 AJ581591 alpha clone KCM-B-57 2.28.1.6.26.3.999 poor quality 61 seqs prokMSA_id:031068 AB013411 Alpha MB11 prokMSA_id:051265 AB054952 Agrobacterium sp. 1099 prokMSA_id:076269 AB075141 clone:TCRS8 prokMSA_id:075095 AB075159 clone:TCR10 prokMSA_id:075021 AB075179 clone:TSRS9 prokMSA_id:005429 AF078249 unnamed organism. prokMSA_id:032941 AF078280 Grassland soil clone saf3_011 prokMSA_id:022228 AF226260 maize root Zmrc6 prokMSA_id:020120 AF231445 Humic substances enrichment clone E5 prokMSA_id:036245 AF260288 Rhizobium sp. PRSFG 20 prokMSA_id:022907 AF292241 Agrobacterium sp. Sws prokMSA_id:042204 AF299362 Rhizobium sp. esparseta prokMSA_id:023801 AF384187 Agrobacterium sp. TJ6 prokMSA_id:037623 AF392630 clone LAG12 prokMSA_id:041415 AF406666 Agrobacterium tumefaciens strain A17 prokMSA_id:075610 AF431092 alpha clone C17.32WL prokMSA_id:067424 AF493324 clone pHS126 prokMSA_id:067222 AF498042 Agrobacterium tumefaciens prokMSA_id:079074 AF547032 363 prokMSA_id:088139 AH012973 Rhizobium sp. F5R19 prokMSA_id:038736 AJ276434 2.4-D degrading NHC2 strain NHC2 prokMSA_id:024644 AJ295354 Rape rhizosphere cse014 prokMSA_id:029185 AJ295358 Rape rhizosphere cse030 prokMSA_id:046409 AJ295396 Rape rhizosphere M9035 prokMSA_id:026829 AJ295435 Rape rhizosphere tsb035 prokMSA_id:038265 AJ295437 Rape rhizosphere tsb039 prokMSA_id:025118 AJ295438 Rape rhizosphere tsb040 prokMSA_id:027547 AJ295440 Rape rhizosphere tsb043 prokMSA_id:019947 AJ295449 Rape rhizosphere tsb066 prokMSA_id:017472 AJ295453 Rape rhizosphere tsb072 prokMSA_id:022431 AJ295455 Rape rhizosphere tsb078 prokMSA_id:039282 AJ295459 Rape rhizosphere tsb090 prokMSA_id:021950 AJ311402 maize rhizosphere c16_23 prokMSA_id:073556 AJ415575 Agrobacterium sp. 0106 809 strain 0106 809 prokMSA_id:080024 AJ437119 clone k5-01 prokMSA_id:065381 AJ488575 Rhizobium sp. R4B strain R4B prokMSA_id:065379 AJ488576 Agrobacterium sp. SE1 strain SE1 prokMSA_id:055765 AJ488577 Agrobacterium sp. SE2 strain SE2 prokMSA_id:080316 AJ539231 Agrobacterium sp. 010793814 strain 0107 93814 prokMSA_id:090479 AJ550277 Agrobacterium tumefaciens isolate TK24 prokMSA_id:089334 AJ550290 Agrobacterium tumefaciens isolate TK4 prokMSA_id:089593 AJ550291 Agrobacterium tumefaciens isolate TK7 prokMSA_id:088409 AJ550292 Agrobacterium tumefaciens isolate TK22 prokMSA_id:089800 AJ550293 Agrobacterium tumefaciens isolate TK23 prokMSA_id:089942 AJ550294 Agrobacterium tumefaciens isolate TK29 prokMSA_id:088045 AJ564106 Agrobacterium tumefaciens strain ABR2 prokMSA_id:093206 AJ581923 Agrobacterium tumefaciens strain 1R2-17 prokMSA_id:093219 AJ581931 Agrobacterium tumefaciens strain 1Re3-21 prokMSA_id:075419 AY159168 MF_isolate_35 prokMSA_id:088912 AY226817 Rhizobium sp. F5R19 5' prokMSA_id:089210 AY226818 Rhizobium sp. F5R19 3' prokMSA_id:086700 AY239011 Marine HP33 prokMSA_id:089403 AY306222 Agrobacterium tumefaciens strain CSL 3137 prokMSA_id:089825 AY306223 Agrobacterium tumefaciens strain CSL 3139 prokMSA_id:089428 AY306224 Agrobacterium tumefaciens strain CSL 3276 prokMSA_id:088099 AY306228 Agrobacterium tumefaciens strain NCPPB 4042 prokMSA_id:097506 AY391703 soil clone M87 prokMSA_id:096832 AY395137 clone D16ST prokMSA_id:005408 NONE Rhizobium sp. str. JL103.Rhizobium isolate. prokMSA_id:005411 S56774 Agrobacterium tumefaciens str. C-58. prokMSA_id:005422 X97087 str. TM41. 2.28.1.6.26.4 AG.VITIS_SUBGROUP 75 seqs 2.28.1.6.26.4.001 OTU 11 seqs prokMSA_id:088458 AB114418 Agrobacterium vitis prokMSA_id:098084 AB118158 Agrobacterium vitis complete prokMSA_id:031290 AJ389910 Agrobacterium vitis strain CFBP2678 prokMSA_id:025961 AJ389911 Agrobacterium vitus strain CFBP2617 prokMSA_id:033557 AJ389912 Agrobacterium vitus strain CFBP2736 prokMSA_id:046044 AJ389913 Agrobacterium vitus strain CFBP2737 prokMSA_id:005437 D12795 Agrobacterium vitis IAM 14140 . prokMSA_id:005432 D14502 Agrobacterium vitis str. K309 NCPPB 3554 . prokMSA_id:005431 U28505 Agrobacterium vitis str. S4. prokMSA_id:005457 U45329 Agrobacterium vitis str. K309 NCPPB 3554 . prokMSA_id:005445 X67225 Agrobacterium vitis LMG 8750 . 2.28.1.6.26.4.002 OTU 22 seqs prokMSA_id:005449 AF025852 Rhizobium huautlense str. S02. prokMSA_id:005454 AF025853 Rhizobium galegae str. 59A2. prokMSA_id:005455 AF109171 str. G-179. prokMSA_id:025256 AF285965 Sinorhizobium sp. S009 prokMSA_id:070978 AF317358 feedlot manure A8 prokMSA_id:051315 AF345544 Rhizobium sp. NM179 prokMSA_id:087964 AF511497 Rhizobium sp. Gls-3 prokMSA_id:082432 AY196142 Rhizobium sp. NK32 prokMSA_id:088539 AY315656 Rhizobium sp. HCY5202 prokMSA_id:005446 D12793 Rhizobium galegae IAM 13631. prokMSA_id:005438 D14510 Rhizobium sp. str. OK-55. prokMSA_id:005448 X67226 Rhizobium galegae str. gal 1261 LMG 6214 . prokMSA_id:005440 Y12352 Rhizobium sp. str. SH1124. prokMSA_id:028382 Y12355 Rhizobium galegae strain HAMBI540 prokMSA_id:024057 Y12356 Rhizobium galegae strain HAMBI1428 prokMSA_id:026161 Y12357 Rhizobium galegae strain HAMBI1461 prokMSA_id:040383 Y12358 Rhizobium galegae strain CIAM0707 prokMSA_id:017326 Y12359 Rhizobium galegae strain HAMBI490 prokMSA_id:042221 Y12360 Rhizobium galegae strain HAMBI1141 prokMSA_id:050677 Y12361 Rhizobium galegae strain BG1 prokMSA_id:028133 Y12362 Rhizobium galegae strain BG5 prokMSA_id:005452 Z79620 Rhizobium galegae str. NBIMTC 2246. 2.28.1.6.26.4.003 OTU 3 seqs prokMSA_id:005450 AF159452 str. NT-25. prokMSA_id:005451 AF159453 str. NT-26. prokMSA_id:022665 AJ294417 Rhizobium sp. TCK strain TCK 2.28.1.6.26.4.004 OTU 1 seq prokMSA_id:005447 D14512 Rhizobium sp. str. 113. 2.28.1.6.26.4.005 OTU 1 seq prokMSA_id:005441 Y17047 Allorhizobium undicola LMG 11875 . 2.28.1.6.26.4.006 OTU 1 seq prokMSA_id:018065 AF422665 clone d081 2.28.1.6.26.4.007 OTU 1 seq prokMSA_id:033915 AJ295691 IrT-JG-65/15 2.28.1.6.26.4.008 OTU 1 seq prokMSA_id:051992 AF423220 soil clone 1315-2 2.28.1.6.26.4.009 OTU 1 seq prokMSA_id:054929 AF151251 marine alpha clone M3-005-1 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S 2.28.1.6.26.4.010 OTU 1 seq prokMSA_id:066888 AY093424 clone M02 2.28.1.6.26.4.011 OTU 2 seqs prokMSA_id:077394 AY167830 Rhizobium galegae strain SAFR-031 prokMSA_id:077532 AY167831 Rhizobium galegae strain SAFR-030 2.28.1.6.26.4.012 OTU 1 seq prokMSA_id:087460 AY268317 clone C9 small subunit 2.28.1.6.26.4.013 OTU 1 seq prokMSA_id:087497 AB095950 Ancalomicrobium adetum 2.28.1.6.26.4.999 poor quality 28 seqs prokMSA_id:049722 AB011708 alpha strain: G23105 prokMSA_id:040634 AB011714 alpha strain: G24105 prokMSA_id:005453 AF064002 Rhizobium CIAM490 str. CIAM490. prokMSA_id:040786 AF226175 Maize root ZmrIs10 prokMSA_id:023594 AF226239 maize root Zmrc223 prokMSA_id:051513 AF256050 alpha GT9-1b prokMSA_id:069833 AF317353 feedlot manure A52 prokMSA_id:039771 AF422681 clone d158 prokMSA_id:076853 AF431128 alpha clone N26.146SM prokMSA_id:064353 AF521025 clone Dpcom21 prokMSA_id:073296 AF530267 Rhizobium sp. S4-31 prokMSA_id:058356 AJ489399 clone NS-I55 prokMSA_id:061452 AY043776 alpha clone SMS9.52WL prokMSA_id:063527 AY117610 Rhizobium sp. ISP20 prokMSA_id:087977 AY283090 alpha clone NS-44 prokMSA_id:090503 AY289414 soil clone ABS-26 prokMSA_id:096078 AY395144 alpha clone D28ST prokMSA_id:005444 D11343 Rhizobium galegae str. gal 1261 ATCC 43677 . prokMSA_id:005458 L13133 str. B279. prokMSA_id:005456 L39920 Rhizobium sp. str. SIN1. prokMSA_id:005443 NONE Rhizobium sp. str. ciam540.Rhizobium isolate. prokMSA_id:005459 NONE Rhizobium sp. str. ciam1141.Rhizobium isolate. prokMSA_id:005434 NONE Rhizobium sp. str. 3394.Rhizobium isolate. prokMSA_id:005435 NONE Rhizobium sp. str. ciam490.Rhizobium isolate. prokMSA_id:005436 NONE Rhizobium sp. str. ciam4540.Rhizobium isolate. prokMSA_id:005433 X63823 Rhizobium galegae str. gal 1261 HAMBI 540 . prokMSA_id:005439 X86602 unnamed organism. prokMSA_id:005442 Y11084 Rhizobium sp. str. DUS470. 2.28.1.6.27 BARTONELLA_SUBGROUP 84 seqs 2.28.1.6.27.001 OTU 51 seqs prokMSA_id:005482 AF070463 Bartonella NVH1 str. nvh1. prokMSA_id:005493 AF076237 Bartonella koehlerae str. C-29 ATCC 700693. prokMSA_id:042409 AF199502 Bartonella sp. FC7049UT prokMSA_id:046747 AF204274 Bartonella birtlesii prokMSA_id:052831 AF214556 Bartonella henselae prokMSA_id:017437 AF214558 Bartonella vinsonii subsp. arupensis prokMSA_id:016730 AF291746 Bartonella sp. 99-BO1 prokMSA_id:049049 AF293389 Bartonella capreoli prokMSA_id:025328 AF293390 Bartonella sp. IBS 206 prokMSA_id:027653 AF293391 Bartonella sp. 91-4 prokMSA_id:043831 AF373845 Bartonella sp. Deer 159/660/1 prokMSA_id:075669 AF442955 Bartonella bacilliformis strain KC584 prokMSA_id:005462 AJ002139 Bartonella alsatica str. 382 CIP 105477 . prokMSA_id:005481 AJ003070 Bartonella tribocorum str. IBS 506 CIP 105476 . prokMSA_id:005489 AJ223778 Bartonella henselae str. FR96/BK3. prokMSA_id:005490 AJ223779 Bartonella henselae str. FR96/BK38. prokMSA_id:005491 AJ223780 Bartonella henselae str. FR97/K7. prokMSA_id:052696 AJ250247 Bartonella quintana prokMSA_id:025998 AJ278187 Bartonella schoenbuchii strain R1 prokMSA_id:026508 AJ278188 Bartonella schoenbuchii strain R3 prokMSA_id:049054 AJ278189 Bartonella schoenbuchii strain R4 prokMSA_id:033033 AJ278190 Bartonella schoenbuchii strain R6 prokMSA_id:016865 AJ299444 Bartonella clarridgeiae strain Ber-K185 prokMSA_id:005496 L01259 Bartonella vinsonii subsp. vinsonii str. Baker ATCC VR-152 . prokMSA_id:005502 L01260 Bartonella elizabethae str. F9251; B91-002005 ATCC 49927 . prokMSA_id:005467 M11927 Bartonella quintana str. Fuller ATCC VR-358 . prokMSA_id:005470 M65249 Bartonella bacilliformis ATCC 35685. prokMSA_id:005495 M73228 Bartonella quintana str. Fuller ATCC VR-358 . prokMSA_id:005487 M73229 Bartonella henselae str. Houston-1. prokMSA_id:005485 M73230 Bartonella vinsonii subsp. vinsonii str. Baker ATCC VR-152 . prokMSA_id:005479 U28268 Bartonella quintana. prokMSA_id:005478 U64691 Bartonella sp. str. 94-F40. prokMSA_id:005464 U71322 Bartonella sp. str. peromysci. prokMSA_id:005492 U87831 clone v9. prokMSA_id:005486 X89110 Wolbachia melophagi str. MO6. prokMSA_id:005476 X89208 Bartonella clarridgeiae str. Houston-2 cat ATCC 51734 . prokMSA_id:005477 X97822 Bartonella clarridgeiae CIP 104772. prokMSA_id:005473 Z11684 Bartonella henselae str. BA-TF. prokMSA_id:005463 Z31349 Bartonella grahamii str. V2 NCTC 12860 . prokMSA_id:005469 Z31350 Bartonella taylorii str. M6 NCTC 12861 . prokMSA_id:005505 Z31351 Bartonella doshiae str. R18 NCTC 12862 . prokMSA_id:005466 Z31352 Bartonella vinsonii subsp. vinsonii str. Baker ATCC VR-152 . prokMSA_id:074316 Z69039 Bartonella sp. prokMSA_id:005501 Z70001 Bartonella sp. str. R-phy2. prokMSA_id:005500 Z70002 Bartonella sp. str. N40. prokMSA_id:005472 Z70003 Bartonella bacilliformis str. LA6.3. prokMSA_id:005484 Z70004 Bartonella sp. str. C7rat. prokMSA_id:005475 Z70005 Bartonella sp. str. R-phy1. prokMSA_id:005498 Z70006 Bartonella sp. str. C1phy. prokMSA_id:005499 Z70007 Bartonella sp. str. C4phy. prokMSA_id:005483 Z70008 Bartonella sp. str. C5rat. 2.28.1.6.27.002 OTU 1 seq prokMSA_id:005504 AB015579 str. BD7-3. 2.28.1.6.27.003 OTU 1 seq prokMSA_id:005503 AF159658 clone HstpL56. 2.28.1.6.27.004 OTU 3 seqs prokMSA_id:053421 AF143446 Bartonella vinsonii subsp. berkhoffii ; -23S intergenic spacer complete ; and tRNA-Ile and tRNA-Ala genes complete prokMSA_id:005465 L35052 Bartonella vinsonii subsp. berkhoffii str. 93-C01 ATCC 51672 . prokMSA_id:005474 U26258 Bartonella bacilliformis ATCC 35685. 2.28.1.6.27.005 OTU 1 seq prokMSA_id:005468 AB015523 str. DB1-14. 2.28.1.6.27.006 OTU 1 seq prokMSA_id:037324 AF469345 alpha CTD44B 2.28.1.6.27.007 OTU 2 seqs prokMSA_id:060660 AF406514 alpha clone AEGEAN_107 prokMSA_id:060657 AF406515 alpha clone AEGEAN_187 2.28.1.6.27.008 OTU 1 seq prokMSA_id:080297 AY193160 clone BTM3 2.28.1.6.27.009 OTU 1 seq prokMSA_id:092394 AY354144 clone pIR3BD11 2.28.1.6.27.010 OTU 1 seq prokMSA_id:092857 AY359828 clone cEIII30 2.28.1.6.27.011 OTU 1 seq prokMSA_id:093105 AY354160 clone pIR3BA07 2.28.1.6.27.999 poor quality 20 seqs prokMSA_id:036919 AB041284 ECS14 prokMSA_id:021875 AB054955 Bartonella sp 1007a prokMSA_id:019640 AB054956 Bartonella sp. 1021 prokMSA_id:005471 AF030779 clone Adriatic90. prokMSA_id:069034 AF194374 kps59rc prokMSA_id:068170 AF365562 clone BT49MF4BD12 prokMSA_id:017047 AF441877 alpha clone CD13G11 prokMSA_id:064680 AF467895 Bartonella sp. prokMSA_id:069303 AF544964 alpha clone 2-7-7 prokMSA_id:073948 AJ292456 ZI-9 clone ZI-9 prokMSA_id:052687 AY038412 alpha clone CD5H5 prokMSA_id:075907 AY157133 alpha isolate PG-69 prokMSA_id:088524 AY323132 alpha clone A115-6 prokMSA_id:090618 AY323143 alpha clone A115-29 prokMSA_id:005461 M59459 Bartonella henselae str. BA-TF. prokMSA_id:005497 U62893 Methylosulfonomonas methylovora str. M2. prokMSA_id:005460 X60042 Bartonella bacilliformis NCTC 12138 . prokMSA_id:005494 Z11683 Bartonella bacilliformis ATCC 35685. prokMSA_id:005480 Z69039 Bartonella vinsonii subsp. berkhoffii. prokMSA_id:005488 Z77496 str. 2-100 C19. 2.28.1.7 CAULOBACTER_GROUP 479 seqs 2.28.1.7.1 ENVIRONMENTAL_CLONE_SMK410 1 seq 2.28.1.7.1.999 poor quality 1 seq prokMSA_id:005506 X78648 clone SMK410. 2.28.1.7.2 PB.IMMOBILE_SUBGROUP 60 seqs 2.28.1.7.2.001 OTU 2 seqs prokMSA_id:021440 AF245033 Caulobacter 5C2 prokMSA_id:005512 AJ227767 Caulobacter sp. str. FWC21. 2.28.1.7.2.002 OTU 1 seq prokMSA_id:005508 Y18216 Phenylobacterium immobile str. E DSM 1986 . 2.28.1.7.2.003 OTU 2 seqs prokMSA_id:055837 AY129778 Caulobacter sp. clone GCPF1 prokMSA_id:089541 AY328814 Drinking water Y7 2.28.1.7.2.004 OTU 1 seq prokMSA_id:072605 AF359549 Marine SCRIPPS_426 2.28.1.7.2.005 OTU 2 seqs prokMSA_id:032988 AF361188 Caulobacter sp. A1 prokMSA_id:090106 AY328836 Drinking water MA28 2.28.1.7.2.006 OTU 1 seq prokMSA_id:035856 AF226254 maize root Zmrc4 2.28.1.7.2.007 OTU 2 seqs prokMSA_id:077947 AB074623 alpha clone:APe9_7 prokMSA_id:046818 AB076664 Caulobacter sp. H62 2.28.1.7.2.008 OTU 1 seq prokMSA_id:049162 AJ292592 WD225 clone WD225 2.28.1.7.2.009 OTU 1 seq prokMSA_id:051369 AJ408098 equine intestinal sp. DL10 clone DL10 2.28.1.7.2.010 OTU 1 seq prokMSA_id:052287 AF236003 Alpha A0902 2.28.1.7.2.011 OTU 1 seq prokMSA_id:055323 AJ408134 equine intestinal sp. DW09 clone DW09 2.28.1.7.2.012 OTU 1 seq prokMSA_id:060281 AY129800 Caulobacter sp. clone GCPF31 2.28.1.7.2.013 OTU 1 seq prokMSA_id:060290 AY129791 Caulobacter sp. clone GCPF17 2.28.1.7.2.014 OTU 1 seq prokMSA_id:060298 AY129783 Caulobacter sp. clone GCPF7 2.28.1.7.2.015 OTU 1 seq prokMSA_id:076351 AY154601 earthworm cast clone c246 2.28.1.7.2.999 poor quality 41 seqs prokMSA_id:047680 AB011705 alpha strain: G23126 prokMSA_id:064064 AB087300 clone:CF22 prokMSA_id:031353 AF058374 clone MT8 prokMSA_id:018416 AF078281 Grassland soil clone saf3_012 prokMSA_id:021903 AF078373 Grassland soil clone sl2_513 prokMSA_id:024768 AF128653 soil S066 prokMSA_id:018442 AF161807 Aquatic STS_R2A_20 prokMSA_id:033926 AF226259 maize root Zmrc56 prokMSA_id:037409 AF226262 maize root Zmrc78 prokMSA_id:030308 AF289912 alpha Kmlps6-17 prokMSA_id:075330 AF431094 alpha clone C17.48WL prokMSA_id:076248 AF431158 alpha clone S36.15SM prokMSA_id:076638 AF431166 alpha clone S37.40SM prokMSA_id:075517 AF431202 alpha clone S51.32PG prokMSA_id:066637 AF432259 Ellin441 prokMSA_id:060486 AF488660 Alpha Z25 prokMSA_id:069354 AF530980 Alpha so44 prokMSA_id:057876 AF546907 clone E5-46-BF1-150 prokMSA_id:033278 AJ225381 Alpha species ; clone 27 prokMSA_id:031366 AJ233470 clone WR106 prokMSA_id:073104 AJ233475 clone WR123 prokMSA_id:017063 AJ292811 WR846 clone WR846 prokMSA_id:049967 AJ292822 WR883 clone WR883 prokMSA_id:034856 AJ292836 WR8154 clone WR8154 prokMSA_id:062625 AJ504487 isolate P1CN16 prokMSA_id:062580 AJ504541 isolate P1CN86 prokMSA_id:094833 AJ582248 alpha clone AC43 prokMSA_id:094362 AJ582261 Pseudomonas sp. clone AC110 prokMSA_id:061584 AY043619 alpha clone NOW2.74WL prokMSA_id:061466 AY043760 alpha clone SMW4.86WL prokMSA_id:069352 AY143718 Caulobacter sp. clone P4 prokMSA_id:069117 AY143724 Caulobacter sp. clone P40 prokMSA_id:085931 AY251215 alpha clone 1B_27 prokMSA_id:098088 AY395085 alpha clone A01R prokMSA_id:005513 D28803 unnamed organism. prokMSA_id:005509 D84632 str. S24500. prokMSA_id:005510 D84636 str. S24521. prokMSA_id:005511 D84640 str. S24541. prokMSA_id:005514 L35462 clone SAR 121. prokMSA_id:005507 X78632 clone SMK141. prokMSA_id:046930 Z82973 sp. clone group T16C 2.28.1.7.3 CAU.VIBRIOIDES_SUBGROUP_II 137 seqs 2.28.1.7.3.002 OTU 4 seqs prokMSA_id:005557 AB008533 Caulobacter fusiformis ATCC 15257 . prokMSA_id:005518 AJ007803 Caulobacter fusiformis ATCC 15257 . prokMSA_id:005516 AJ227759 Caulobacter fusiformis ATCC 15257 . prokMSA_id:047991 AJ295490 rape rhizosphere wr0031 2.28.1.7.3.004 OTU 2 seqs prokMSA_id:078964 AY177780 Afipia sp. prokMSA_id:005552 U87785 Afipia genosp. 14 str. G8999. 2.28.1.7.3.005 OTU 43 seqs prokMSA_id:005524 AB008531 Caulobacter vibrioides NCIMB 9082. prokMSA_id:005558 AB008532 Caulobacter henricii ATCC 15253 . prokMSA_id:005544 AB023427 Caulobacter segnis str. MBIC2835. prokMSA_id:058536 AB072705 clone:pHAuB-1 prokMSA_id:038932 AB074665 Alpha D-A2-9 prokMSA_id:005546 AF125194 Caulobacter crescentus str. CB2. prokMSA_id:081088 AF484627 Bradyrhizobium sp. 36b prokMSA_id:066286 AF506056 Caulobacter sp. LCSAOTU30 prokMSA_id:089320 AF523056 Caulobacter sp. clone I-14 prokMSA_id:005560 AJ007805 Caulobacter henricii ATCC 15253 . prokMSA_id:005543 AJ009957 Caulobacter vibrioides str. CB51. prokMSA_id:005540 AJ227754 Caulobacter vibrioides str. CB51 Neotype strain DSM 9893. prokMSA_id:005541 AJ227755 Caulobacter vibrioides ATCC 11764. prokMSA_id:005525 AJ227756 Caulobacter crescentus str. CB2 ATCC 15252. prokMSA_id:044545 AJ227757 Caulobacter crescentus strain CB15 ATCC 19089 prokMSA_id:005551 AJ227758 Caulobacter henricii ATCC 15253 . prokMSA_id:005548 AJ227760 Caulobacter sp. str. FWC02. prokMSA_id:005526 AJ227761 Caulobacter sp. str. FWC06. prokMSA_id:005527 AJ227762 Caulobacter sp. str. FWC08. prokMSA_id:005528 AJ227763 Caulobacter sp. str. FWC16. prokMSA_id:005529 AJ227764 Caulobacter sp. str. FWC17. prokMSA_id:005530 AJ227765 Caulobacter sp. str. FWC18. prokMSA_id:005553 AJ227766 Caulobacter sp. str. FWC20. prokMSA_id:005531 AJ227768 Caulobacter sp. str. FWC26. prokMSA_id:005532 AJ227769 Caulobacter sp. str. FWC28. prokMSA_id:005533 AJ227770 Caulobacter sp. str. FWC29. prokMSA_id:005534 AJ227771 Caulobacter sp. str. FWC31. prokMSA_id:005535 AJ227772 Caulobacter sp. str. FWC33. prokMSA_id:005536 AJ227773 Caulobacter sp. str. FWC35. prokMSA_id:005554 AJ227774 Caulobacter sp. str. FWC38. prokMSA_id:005537 AJ227775 Caulobacter sp. str. FWC41. prokMSA_id:005538 AJ227776 Caulobacter sp. str. FWC42. prokMSA_id:005539 AJ227777 Caulobacter sp. str. FWC45. prokMSA_id:036796 AJ318160 alpha clone BImi11 prokMSA_id:077699 AJ514444 clone AS1o5 prokMSA_id:077918 AJ514446 clone AS1o7 prokMSA_id:047767 AY038618 clone GL182.16 prokMSA_id:065572 AY095389 yard-trimming-compost clone S-17 prokMSA_id:079127 AY187897 clone I15 prokMSA_id:088815 AY315164 Glacier FXI47 prokMSA_id:091213 AY345391 G8 prokMSA_id:005523 D13947 Mycoplana segnis IFO 13240 . prokMSA_id:074056 NC_002696 Caulobacter crescentus CB15 complete genome 2.28.1.7.3.006 OTU 1 seq prokMSA_id:005517 X97079 str. TM 16. 2.28.1.7.3.007 OTU 3 seqs prokMSA_id:017111 AF234696 sludge H4 prokMSA_id:046308 AF234717 sludge S7 prokMSA_id:075034 AJ518763 alpha clone JG37-AG-6 2.28.1.7.3.008 OTU 1 seq prokMSA_id:030983 AJ292595 WD233 clone WD233 2.28.1.7.3.009 OTU 1 seq prokMSA_id:054353 AJ292607 WD297 clone WD297 2.28.1.7.3.010 OTU 2 seqs prokMSA_id:055270 AJ459874 clone D prokMSA_id:089037 AY323816 Caulobacteraceae clone KMD-0-40 2.28.1.7.3.011 OTU 1 seq prokMSA_id:060548 AY035307 Phenylobacterium sp. G26 2.28.1.7.3.012 OTU 1 seq prokMSA_id:075785 AJ518769 alpha clone JG37-AG-32 2.28.1.7.3.013 OTU 1 seq prokMSA_id:079535 AY187321 clone csbio160386 2.28.1.7.3.014 OTU 1 seq prokMSA_id:081260 AJ548909 Caulobacter sp. clone BIOEST-20 2.28.1.7.3.015 OTU 1 seq prokMSA_id:087252 AY278869 Fulvimarina sp. CT2 2.28.1.7.3.016 OTU 1 seq prokMSA_id:087263 AY278911 Ancylobacter sp. T5-17 2.28.1.7.3.017 OTU 1 seq prokMSA_id:089365 AF523036 Caulobacter sp. clone D-1 2.28.1.7.3.018 OTU 1 seq prokMSA_id:093768 AJ582031 alpha clone JG36-GS-63 2.28.1.7.3.999 poor quality 72 seqs prokMSA_id:017430 AB010600 clone ASB018 prokMSA_id:083534 AB097990 Alpha ANRB7-4 prokMSA_id:082468 AB098002 Alpha ANRB21-3 prokMSA_id:085947 AB098006 Alpha ANRB24-2 prokMSA_id:044028 AF078208 Grassland soil clone saf1_305 prokMSA_id:017043 AF078310 Grassland soil clone saf3_122 prokMSA_id:030157 AF078338 Grassland soil clone sl1_111 prokMSA_id:048081 AF078420 Grassland soil clone sl3_613 prokMSA_id:036888 AF124654 Px12-DGGE band b prokMSA_id:025240 AF226248 maize root Zmrc26 prokMSA_id:034376 AF301221 Caulobacter sp. FWC 28 prokMSA_id:019634 AF393477 Alpha sp. oral clone AW149 prokMSA_id:022521 AF428777 clone CR98-5-47 prokMSA_id:076059 AF431085 alpha clone C16.54WL prokMSA_id:076487 AF431148 alpha clone C31.69SM prokMSA_id:077064 AF431150 alpha clone C32.15SM prokMSA_id:076431 AF431155 alpha clone C32.52SM prokMSA_id:076903 AF431160 alpha clone S36.49SM prokMSA_id:077096 AF431169 alpha clone N41.130PG prokMSA_id:077207 AF431170 alpha clone N41.136PG prokMSA_id:076863 AF431188 alpha clone C46.95PG prokMSA_id:039909 AF446301 alpha FL07D09 prokMSA_id:018289 AF473988 68-4 prokMSA_id:088783 AF491890 Cf. Caulobacter symbiont of Acromyrmex octospinosus prokMSA_id:062716 AF507836 alpha clone ML623J-8 prokMSA_id:069691 AF530951 Alpha zj13 prokMSA_id:069205 AF531011 Alpha Msj1 prokMSA_id:058055 AF547414 alpha clone CL-S77-301 prokMSA_id:075373 AF550594 Caulobacter sp. clone LiUU-1-5a prokMSA_id:028719 AJ000922 sp. isolate K31 prokMSA_id:047711 AJ233501 clone WR1124 prokMSA_id:021743 AJ233504 clone WR1134 prokMSA_id:038346 AJ292821 WR882 clone WR882 prokMSA_id:046495 AJ292828 WR8113 clone WR8113 prokMSA_id:019831 AJ295536 rape rhizosphere wr0096 prokMSA_id:047383 AJ308290 clone F99_28 prokMSA_id:048946 AJ309982 alpha strain dtb88 prokMSA_id:047992 AJ404647 Caulobacter group 131-2-1 prokMSA_id:062566 AJ504554 isolate P2CN03 prokMSA_id:057216 AJ518290 clone Mul2P3-59 prokMSA_id:035726 AY006528 rumen prokMSA_id:039043 AY006668 rumen prokMSA_id:061597 AY043605 alpha clone NOW2.106WL prokMSA_id:061575 AY043630 alpha clone NOS7.110WL prokMSA_id:061568 AY043644 alpha clone NOS7.40WL prokMSA_id:061465 AY043762 alpha clone NMS8.10WL prokMSA_id:086569 AY092349 clone BI92 prokMSA_id:060276 AY129810 Caulobacter sp. clone GCPF45 complete prokMSA_id:060892 AY135880 clone SG1-97 prokMSA_id:070304 AY143772 Caulobacter sp. clone Lur76 prokMSA_id:074955 AY150953 alpha clone uvi1 prokMSA_id:075618 AY159158 MF_isolate_15 prokMSA_id:096934 AY268468 alpha clone 28 prokMSA_id:091665 AY345363 Ph15 prokMSA_id:096082 AY394615 alpha clone W2-7 prokMSA_id:095824 AY395220 clone Roth01 prokMSA_id:055875 L00194 Caulobacter crescentus ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:005521 L41811 Caulobacter sp. str. CDF20a. prokMSA_id:005556 L41813 Caulobacter sp. str. MR1. prokMSA_id:005555 M11453 Caulobacter vibrioides str. CB13. prokMSA_id:005515 M83796 Caulobacter bacteroides str. CB7. prokMSA_id:005559 M83798 Caulobacter vibrioides str. CB15A. prokMSA_id:005545 M83799 Caulobacter vibrioides str. CB2A. prokMSA_id:005549 M83801 Caulobacter sp. str. FWC17. prokMSA_id:005520 M83802 Caulobacter sp. str. FWC18. prokMSA_id:005547 M83803 Caulobacter sp. str. FWC2. prokMSA_id:005522 M83804 Caulobacter sp. str. FWC26. prokMSA_id:005561 M83805 Caulobacter sp. str. FWC38. prokMSA_id:042003 U85153 alpha clone ACK-DH13 prokMSA_id:005519 X03428 Caulobacter vibrioides. prokMSA_id:005550 X52281 Caulobacter vibrioides str. CB2. prokMSA_id:005542 X97091 str. TM103. 2.28.1.7.4 ASC.EXCENTRICUS_SUBGROUP 13 seqs 2.28.1.7.4.001 OTU 3 seqs prokMSA_id:005564 AB014055 Asticcacaulis biprosthecium str. MBIC3411 ATCC 27554 . prokMSA_id:093202 AB093140 Asticcacaulis sp. SA7 prokMSA_id:025580 AJ247193 Asticcacaulis biprosthecium strain DSM 4723 2.28.1.7.4.002 OTU 2 seqs prokMSA_id:005563 AB016610 Asticcacaulis excentricus ATCC 15261 . prokMSA_id:024445 AJ247194 Asticcacaulis excentricus strain DSM 4724 2.28.1.7.4.003 OTU 1 seq prokMSA_id:005562 AF115499 Asticcacaulis excentricus ATCC 15261 . 2.28.1.7.4.004 OTU 1 seq prokMSA_id:017344 AF115501 Asticcacaulis biprosthecium 2.28.1.7.4.005 OTU 1 seq prokMSA_id:059195 AY136075 Asticcacaulis sp. KIN48 2.28.1.7.4.006 OTU 1 seq prokMSA_id:070005 AF289151 firmicute clone PRD01a003B 2.28.1.7.4.999 poor quality 4 seqs prokMSA_id:035220 AF226195 maize root Zmrc100 prokMSA_id:036036 AJ225367 Alpha species ; clone 98 prokMSA_id:005565 X78629 clone SMK1. prokMSA_id:005566 X78633 clone SMK142. 2.28.1.7.5 CAU.SUBVIBRIOIDES_SUBGROUP 268 seqs 2.28.1.7.5.006 OTU 3 seqs prokMSA_id:005616 AB025196 Caulobacter MBIC3983 str. MBIC3983. prokMSA_id:005621 AJ227799 Brevundimonas MCS17 str. MCS17. prokMSA_id:005600 M83810 Caulobacter sp. str. MCS24. 2.28.1.7.5.011 OTU 1 seq prokMSA_id:005598 AB016847 Caulobacter sp. str. MBIC1405. 2.28.1.7.5.012 OTU 1 seq prokMSA_id:005594 D49422 Brevundimonas diminuta IFO 3140. 2.28.1.7.5.014 OTU 124 seqs prokMSA_id:005599 AB002633 str. HTA333. prokMSA_id:005567 AB008392 Caulobacter subvibrioides ATCC 15264 . prokMSA_id:005627 AB008393 Caulobacter subvibrioides subsp. albus ATCC 15265. prokMSA_id:005602 AB008513 Caulobacter bacteroides ATCC 15254 . prokMSA_id:005628 AB008514 Caulobacter bacteroides NCIMB 9790. prokMSA_id:005587 AB016846 Caulobacter henricii subsp. aurantiacus ATCC 15266. prokMSA_id:005588 AB016849 str. MBIC3018. prokMSA_id:005589 AB016850 str. MBIC3034. prokMSA_id:005590 AB016851 str. MBIC3032. prokMSA_id:005591 AB016852 str. MBIC3033. prokMSA_id:005592 AB016853 str. MBIC3036. prokMSA_id:005612 AB016980 str. MBIC3025. prokMSA_id:005613 AB016981 str. MBIC3029. prokMSA_id:005609 AB019037 str. MBIC3965. prokMSA_id:005571 AB021414 Brevundimonas vesicularis IAM 12105 . prokMSA_id:005595 AB021415 Brevundimonas diminuta IAM 12691. prokMSA_id:005625 AB023428 Brevundimonas bullata str. MBIC2745. prokMSA_id:005578 AB023784 Caulobacter intermedius str. CB63 ATCC 15262 . prokMSA_id:058515 AB072712 clone:pHAuB-20 prokMSA_id:078367 AB074603 alpha clone:APe2_5 prokMSA_id:078340 AB074604 alpha clone:APe2_20 prokMSA_id:078399 AB074605 alpha clone:APe2_51 prokMSA_id:048600 AB074669 Alpha D-N0-4C prokMSA_id:064061 AB087306 clone:CF28 prokMSA_id:005608 AF137356 str. VUN10077. prokMSA_id:072871 AF220319 O14C5 prokMSA_id:025494 AF296678 Brevundimonas alba strain 8 prokMSA_id:040068 AF296681 Brevundimonas alba strain 20 prokMSA_id:034750 AF296682 Brevundimonas alba strain 24 prokMSA_id:043022 AF296683 Brevundimonas alba strain 25 prokMSA_id:043852 AF296687 Brevundimonas alba strain 33 prokMSA_id:023972 AF296688 Brevundimonas alba strain H12C5 prokMSA_id:021958 AF321018 Brevundimonas intermedia prokMSA_id:017109 AF321047 Brevundimonas sp. GOBB3-110 prokMSA_id:074841 AF321200 alpha rcr_47 prokMSA_id:036184 AF361190 Caulobacter sp. A2 prokMSA_id:046088 AF394174 Blackwater bioreactor BW23 prokMSA_id:066812 AF430126 Brevundimonas sp. dcm7A prokMSA_id:049192 AF445713 alpha clone SM2B07 prokMSA_id:056373 AF507006 Br-38 prokMSA_id:055310 AF507007 Br-33 prokMSA_id:066318 AF507008 Br-z43 prokMSA_id:005607 AJ001345 unnamed organism. prokMSA_id:005603 AJ007801 Brevundimonas vesicularis ACM 2862 . prokMSA_id:005568 AJ007802 Caulobacter intermedius str. CB63 ACM 2608 . prokMSA_id:005626 AJ007808 Caulobacter variabilis str. CB17 ATCC 15255 . prokMSA_id:005606 AJ222832 str. 4-8. prokMSA_id:005596 AJ227778 Brevundimonas diminuta LMG 2089. prokMSA_id:005597 AJ227779 Brevundimonas diminuta LMG 2337. prokMSA_id:005605 AJ227780 Brevundimonas vesicularis LMG 2350 . prokMSA_id:005611 AJ227781 Brevundimonas vesicularis LMG 11141. prokMSA_id:005579 AJ227782 Brevundimonas bacteroides str. CB7 LMG 15096. prokMSA_id:043186 AJ227783 Brevundimonas variabilis strain ATCC 15255 prokMSA_id:005617 AJ227784 Brevundimonas subvibrioides str. CB81 LMG 14903. prokMSA_id:005580 AJ227785 Brevundimonas alba str. CB88 DSM 4736. prokMSA_id:053033 AJ227786 Brevundimonas intermedia strain ATCC 15262 prokMSA_id:005581 AJ227787 Brevundimonas aurantiaca str. CB-R DSM 4731. prokMSA_id:005622 AJ227788 Caulobacter sp. str. CB66 DSM 10556. prokMSA_id:005623 AJ227789 Caulobacter sp. str. CB26 DSM 6811. prokMSA_id:005585 AJ227790 Caulobacter sp. str. KA5 DSM 6812. prokMSA_id:005624 AJ227791 Caulobacter sp. str. CB35 DSM 10560. prokMSA_id:005586 AJ227792 Caulobacter sp. str. CB28 DSM 10670. prokMSA_id:005618 AJ227793 Brevundimonas FWC04 str. FWC04. prokMSA_id:005619 AJ227794 Brevundimonas FWC05 str. FWC05. prokMSA_id:005575 AJ227795 Brevundimonas FWC14 str. FWC14. prokMSA_id:005582 AJ227796 Brevundimonas FWC30 str. FWC30. prokMSA_id:005583 AJ227797 Brevundimonas FWC40 str. FWC40. prokMSA_id:005620 AJ227798 Brevundimonas FWC43 str. FWC43. prokMSA_id:005610 AJ227800 Brevundimonas V4.BO.07 str. V4.BO.07. prokMSA_id:005584 AJ227801 Brevundimonas V4.BO.10 str. V4.BO.10. prokMSA_id:031667 AJ295562 rape rhizosphere wr0066 prokMSA_id:073480 AJ300773 Brevundimonas sp. LMG 19834 strain LMG 19834 prokMSA_id:071758 AJ311963 alpha strain OS-123B prokMSA_id:032640 AJ313427 Brevundimonas H2/98-FUNDUS strain H2/98-FUNDUS prokMSA_id:020726 AJ431336 Brevundimonas sp. ikaite c3 isolate ikaite c3 prokMSA_id:063466 AJ495803 Brevundimonas sp. p22P prokMSA_id:075508 AJ534668 alpha clone S15A-MN37 prokMSA_id:078968 AJ534855 Brevundimonas sp. DW78 isolate DW78 prokMSA_id:078519 AJ534862 Brevundimonas sp. DW114b isolate DW114b prokMSA_id:088130 AJ576026 Brevundimonas intermedia strain MR320R prokMSA_id:032090 AY008333 Brevundimonas sp. DB2 prokMSA_id:025230 AY008334 Brevundimonas sp. DB3 prokMSA_id:039438 AY039826 Brevundimonas diminuta strain jshs17 prokMSA_id:059197 AY136072 Brevundimonas aurantiaca prokMSA_id:059178 AY136095 Brevundimonas sp. KIN166 prokMSA_id:072225 AY145540 Brevundimonas sp. AP-1 prokMSA_id:069859 AY145541 Brevundimonas sp. AP-2 prokMSA_id:070992 AY145542 Brevundimonas sp. AP-3 prokMSA_id:073015 AY145643 alpha FL10F02 prokMSA_id:055635 AY145646 alpha FL10G04 prokMSA_id:056673 AY145661 alpha FL12F01 prokMSA_id:078717 AY159795 Brevundimonas sp. B30 prokMSA_id:074937 AY162909 clone ZB-Z97 prokMSA_id:082124 AY169433 Brevundimonas vesicularis prokMSA_id:079008 AY177781 Brevundimonas sp. prokMSA_id:078490 AY189627 clone EarCan100 prokMSA_id:089952 AY293625 Brevundimonas sp. PP1 prokMSA_id:089869 AY315163 Glacier FXI13 prokMSA_id:089127 AY328751 DSSD53 prokMSA_id:089707 AY328778 DSSD81 prokMSA_id:088999 AY328800 Drinking water OR3 prokMSA_id:090161 AY328801 Drinking water OR9 prokMSA_id:090599 AY328802 Drinking water OR12 prokMSA_id:089317 AY328803 Drinking water OR14 prokMSA_id:089694 AY328804 Drinking water OR15 prokMSA_id:090684 AY328808 Drinking water OR24 prokMSA_id:089778 AY328809 Drinking water OR26 prokMSA_id:088968 AY328810 Drinking water OR30 prokMSA_id:088765 AY328812 Drinking water OR34 prokMSA_id:088505 AY328828 Drinking water MA2 prokMSA_id:089520 AY328829 Drinking water MA6 prokMSA_id:090689 AY328830 Drinking water MA9 prokMSA_id:089597 AY328831 Drinking water MA10 prokMSA_id:090002 AY328832 Drinking water MA11 prokMSA_id:088577 AY328833 Drinking water MA15 prokMSA_id:088327 AY328834 Drinking water MA24 prokMSA_id:089630 AY328835 Drinking water MA26 prokMSA_id:090089 AY328837 Drinking water MA30 prokMSA_id:090222 AY328847 Drinking water MB25 prokMSA_id:088939 AY328848 Drinking water MB26 prokMSA_id:091553 AY336538 Brevundimonas sp. pfB9 prokMSA_id:005615 D12785 Mycoplana bullata IAM 13153 . prokMSA_id:005572 M59064 Brevundimonas diminuta ATCC 11568 . prokMSA_id:005593 X87274 Brevundimonas diminuta. 2.28.1.7.5.015 OTU 1 seq prokMSA_id:019977 AJ292615 WD282 clone WD282 2.28.1.7.5.016 OTU 1 seq prokMSA_id:020792 AJ290047 FukuS132 2.28.1.7.5.017 OTU 1 seq prokMSA_id:044086 AF320338 alpha rcr_1 2.28.1.7.5.018 OTU 1 seq prokMSA_id:048143 AF320339 alpha rcr_12 2.28.1.7.5.019 OTU 1 seq prokMSA_id:050466 AF418951 clone HTC6 2.28.1.7.5.020 OTU 1 seq prokMSA_id:050815 AF321197 rcr_19 2.28.1.7.5.021 OTU 1 seq prokMSA_id:063286 AF523933 clone RCP1-88 2.28.1.7.5.022 OTU 1 seq prokMSA_id:071837 AY145543 Brevundimonas sp. AP-5 2.28.1.7.5.023 OTU 1 seq prokMSA_id:087316 AY268330 clone A3 small subunit 2.28.1.7.5.024 OTU 1 seq prokMSA_id:087601 AY293404 alpha clone SM2A11 2.28.1.7.5.025 OTU 23 seqs prokMSA_id:089955 AY328551 HOClCi2 prokMSA_id:090209 AY328552 HOClCi3 prokMSA_id:089071 AY328562 HOClCi13 prokMSA_id:089652 AY328566 HOClCi17 prokMSA_id:089551 AY328568 HOClCi19 prokMSA_id:090360 AY328569 HOClCi20 prokMSA_id:088157 AY328579 HOClCi30 prokMSA_id:089570 AY328589 HOClCi40 prokMSA_id:088349 AY328594 HOClCi45 prokMSA_id:088571 AY328598 HOClCi49 prokMSA_id:089722 AY328604 HOClCi55 prokMSA_id:090327 AY328615 HOClCi66 prokMSA_id:089101 AY328631 DSSF8 prokMSA_id:089819 AY328637 DSSF14 prokMSA_id:088517 AY328646 DSSF23 prokMSA_id:089167 AY328653 DSSF31 prokMSA_id:088669 AY328677 DSSF55 prokMSA_id:088419 AY328678 DSSF56 prokMSA_id:090169 AY328679 DSSF57 prokMSA_id:089596 AY328681 DSSF59 prokMSA_id:089583 AY328682 DSSF60 prokMSA_id:088915 AY328692 DSSF70 prokMSA_id:088123 AY328750 DSSD52 2.28.1.7.5.026 OTU 1 seq prokMSA_id:089315 AY328627 DSSF4 2.28.1.7.5.027 OTU 2 seqs prokMSA_id:089703 AY328842 Drinking water MB11 prokMSA_id:090012 AY328851 Drinking water MB29 2.28.1.7.5.028 OTU 2 seqs prokMSA_id:097733 AY378193 Extreme arid zone HX-IIF24 prokMSA_id:096427 AY378252 Glacial ice MS-T13-03 2.28.1.7.5.029 OTU 1 seq prokMSA_id:096555 Y14151 Caulobacter sp. isolate ISR011 2.28.1.7.5.999 poor quality 100 seqs prokMSA_id:018579 AB007011 alpha prokMSA_id:059467 AB071954 Brevundimonas nasdae prokMSA_id:048357 AF025559 Brevundimonas diminuta prokMSA_id:036968 AF078300 Grassland soil clone saf3_111 prokMSA_id:030867 AF078307 Grassland soil clone saf3_119 prokMSA_id:017359 AF078385 Grassland soil clone sl2_701 prokMSA_id:024798 AF104285 131 prokMSA_id:028661 AF107501 SY1-44 prokMSA_id:072370 AF124658 Px2-DGGE band a prokMSA_id:024809 AF126932 alpha clone c6 prokMSA_id:039736 AF175647 WJGRT-144 prokMSA_id:017077 AF182022 Brevundimonas sp. BAL51 prokMSA_id:020032 AF231414 Humic substances-degrading HS146 prokMSA_id:022248 AF261062 Caulobacter intermedius prokMSA_id:042505 AF312669 Caulobacter sp. M6 prokMSA_id:042557 AF321199 alpha rcr_45 prokMSA_id:039655 AF321202 alpha rcr_50 prokMSA_id:066715 AF325139 Brevundimonas sp. A22 prokMSA_id:027418 AF333555 NW-Sp2A prokMSA_id:069022 AF345915 prokMSA_id:030518 AF358010 clone LO13.18 prokMSA_id:070416 AF361180 Caulobacter sp. prokMSA_id:042015 AF392799 clone CRB5 prokMSA_id:042476 AF428790 clone CR98-5-60 prokMSA_id:041878 AF428887 clone CR98-35-05 prokMSA_id:039942 AF429216 clone CR99-2-30 prokMSA_id:075980 AF431157 alpha clone S36.09SM prokMSA_id:076655 AF431182 alpha clone N42.49PG prokMSA_id:076653 AF431198 alpha clone S51.17PG prokMSA_id:075677 AF431210 alpha clone S52.44PG prokMSA_id:048319 AF440282 clone PO2 prokMSA_id:066960 AF442051 firmicute clone CD1401B4 prokMSA_id:049821 AF446296 alpha FL13B11 prokMSA_id:040908 AF446297 alpha FL14F11 prokMSA_id:018251 AF446298 alpha FL07G02 prokMSA_id:048096 AF446299 alpha FL13C03 prokMSA_id:052760 AF446300 alpha FL07F05 prokMSA_id:050111 AF446312 alpha FL07H12 prokMSA_id:048981 AF446343 FL13B06 prokMSA_id:068491 AF487342 alpha clone FL13H05 prokMSA_id:066437 AF497878 alpha isolate WL5-4 prokMSA_id:066435 AF497880 alpha isolate WL5-15 prokMSA_id:071015 AF530919 Alpha sj16 prokMSA_id:055873 AF530928 Alpha sj50 prokMSA_id:073560 AF530929 Alpha sj52 prokMSA_id:069632 AF530956 Alpha zj26 prokMSA_id:060311 AF537611 alpha clone Dpcom34 prokMSA_id:060307 AF537616 alpha clone Dpcom39 prokMSA_id:060306 AF537617 alpha clone Dpcom40 prokMSA_id:060305 AF537619 alpha clone Dpcom42 prokMSA_id:077104 AF538341 isolate ENV-MO-009 prokMSA_id:024856 AJ295424 Rape rhizosphere tsb018 prokMSA_id:072653 AJ318201 clone BIxi19 prokMSA_id:021641 AJ344224 Brevundimonas diminuta strain TSJ14 prokMSA_id:036256 AJ391177 marine alpha AS-14 prokMSA_id:033291 AJ404648 Caulobacter group 172-1-3 prokMSA_id:038480 AJ405054 A13-K3 clone A13-K3 prokMSA_id:062565 AJ504558 isolate P2CN07 prokMSA_id:062520 AJ504613 isolate P2CN76 prokMSA_id:062516 AJ504616 isolate P2CN79 prokMSA_id:057532 AJ516048 Brevundimonas diminuta strain LE/65 prokMSA_id:098857 AJ585216 Brevundimonas vesicularis prokMSA_id:021185 AY008336 Brevundimonas sp. DB5 prokMSA_id:026878 AY038705 clone TAF-A15 prokMSA_id:061454 AY043778 alpha clone SMS9.9WL prokMSA_id:059181 AY136090 Caulobacter sp. KIN137 prokMSA_id:070524 AY143712 Brevundimonas sp. clone Lu70 prokMSA_id:055862 AY143760 Caulobacteraceae clone Lur19 prokMSA_id:073301 AY145577 alpha clone DC5-0-4 prokMSA_id:069652 AY145645 alpha FL10F12 prokMSA_id:072461 AY145663 alpha FL12F11 prokMSA_id:069343 AY145673 alpha CD21H07 prokMSA_id:056654 AY150567 Uncultivated soil clone Dpcom48 prokMSA_id:057334 AY150568 Uncultivated soil clone Dpcom50 prokMSA_id:057330 AY150569 Uncultivated soil clone Dpcom51 prokMSA_id:075856 AY150923 alpha clone uv7 prokMSA_id:075440 AY150954 alpha clone uvi10 prokMSA_id:076520 AY174205 Acidobacteriales clone WS073 prokMSA_id:078886 AY177782 isolate Ox08 prokMSA_id:079394 AY186813 alpha clone uv7 prokMSA_id:079179 AY186844 alpha clone uvi10 prokMSA_id:082565 AY251231 alpha clone 18B_4 prokMSA_id:083348 AY254691 alpha SBR8alpha11 prokMSA_id:087907 AY268241 clone H8 small subunit prokMSA_id:087488 AY274230 alpha isolate DGGE band GWS-FL-4 prokMSA_id:087212 AY293517 clone FL13B07 prokMSA_id:087061 AY293518 alpha clone FL13B08 prokMSA_id:087192 AY293520 clone FL13C04 prokMSA_id:098619 AY378250 Glacial ice MS-T3-02 prokMSA_id:097395 AY378273 Permafrost DT-IF8 prokMSA_id:005570 L41810 Caulobacter sp. str. CDF35. prokMSA_id:005576 L41812 Caulobacter sp. str. CDFo. prokMSA_id:005604 L41814 Caulobacter sp. str. TS1. prokMSA_id:005574 M83800 Caulobacter sp. str. FWC14. prokMSA_id:005577 M83808 Caulobacter sp. str. MCS17. prokMSA_id:005614 U27843 clone pCON12. prokMSA_id:005573 U27847 clone pCON26. prokMSA_id:005569 U27858 clone L. prokMSA_id:040190 U63935 Caulobacter sp. prokMSA_id:005601 X94470 Caulobacter subvibrioides ACM 2483 . 2.28.1.8 RHODOBACTER-RHODOVULUM-HYPHOMONAS-RICKETTSIA 2930 seqs 2.28.1.8.1 RHODOBACTER_GROUP 1542 seqs 2.28.1.8.1.1 ROS.LITORALIS_SUBGROUP 1055 seqs 2.28.1.8.1.1.1 ROS.DENITRIFICANS_SUBGROUP 289 seqs 2.28.1.8.1.1.1.001 OTU 2 seqs prokMSA_id:005653 L01784 Roseobacter denitrificans str. OCh 114 . prokMSA_id:005651 M96746 Roseobacter denitrificans str. OCh 114 . 2.28.1.8.1.1.1.002 OTU 2 seqs prokMSA_id:005649 AF076897 str. B5-6. prokMSA_id:005650 AF076898 str. B5-6. 2.28.1.8.1.1.1.004 OTU 1 seq prokMSA_id:005646 AF139999 str. ML-126. 2.28.1.8.1.1.1.005 OTU 1 seq prokMSA_id:005645 AF098494 Roseobacter GAI-109 str. GAI-109. 2.28.1.8.1.1.1.006 OTU 1 seq prokMSA_id:005644 X78312 Roseobacter litoralis ATCC 49566 . 2.28.1.8.1.1.1.010 OTU 2 seqs prokMSA_id:005636 AF142794 clone ACE-16. prokMSA_id:031180 AF194394 Agrobacterium kpc101f 2.28.1.8.1.1.1.011 OTU 1 seq prokMSA_id:005632 AJ002565 str. SRF3. 2.28.1.8.1.1.1.012 OTU 3 seqs prokMSA_id:039602 AF107209 Roseobacter sp. Prionitis filiformis symbiont prokMSA_id:005630 AF107210 Roseobacter Prionitis decipiens symbiont. prokMSA_id:005629 U37762 symbiont of Prionitis lanceolata gall. 2.28.1.8.1.1.1.013 OTU 1 seq prokMSA_id:016662 Z88581 isolate HRV3# HpaAS1 2.28.1.8.1.1.1.014 OTU 4 seqs prokMSA_id:017447 AF305498 Roseobacter sp. KT0202a prokMSA_id:036728 AJ391182 marine alpha AS-21 prokMSA_id:056667 AY145564 Rhodobacteraceae AP-27 prokMSA_id:077756 AY171343 clone s95 2.28.1.8.1.1.1.015 OTU 12 seqs prokMSA_id:017964 AJ294355 Roseobacter 667-19 isolate 667-19 prokMSA_id:075812 AJ534214 Sulfitobacter sp. DFL-23 isolate DFL-23 prokMSA_id:076521 AJ534222 Sulfitobacter sp. DFL-41 isolate DFL-41 prokMSA_id:076775 AJ534239 Sulfitobacter sp. PIC-69 isolate PIC-69 prokMSA_id:075072 AJ534240 Sulfitobacter sp. PIC-70 isolate PIC-70 prokMSA_id:076561 AJ534241 Sulfitobacter sp. PIC-72 isolate PIC-72 prokMSA_id:076222 AJ534242 Sulfitobacter sp. PIC-74 isolate PIC-74 prokMSA_id:076030 AJ534243 Sulfitobacter sp. PIC-76 isolate PIC-76 prokMSA_id:076108 AJ534244 Sulfitobacter sp. PIC-82 isolate PIC-82 prokMSA_id:082801 AY239009 Marine HP30 prokMSA_id:083982 AY239010 Marine HP37 prokMSA_id:048680 Y15343 Roseobacter sp. isolate PRLIST06 2.28.1.8.1.1.1.016 OTU 1 seq prokMSA_id:020261 AF142960 TAYNAYA-14 2.28.1.8.1.1.1.017 OTU 1 seq prokMSA_id:059162 AY136104 Roseobacter sp. MED008 2.28.1.8.1.1.1.024 OTU 1 seq prokMSA_id:031713 AF348714 alpha clone MPD-20 2.28.1.8.1.1.1.025 OTU 1 seq prokMSA_id:032000 AF034933 Alpha 'ANG clone 1995' 2.28.1.8.1.1.1.026 OTU 1 seq prokMSA_id:032086 AF259622 Rhodobacter CtaxPhil-8 2.28.1.8.1.1.1.027 OTU 1 seq prokMSA_id:032231 AF245628 Roseobacter NAC1-19 2.28.1.8.1.1.1.028 OTU 1 seq prokMSA_id:032544 AF419282 antarctic soil clone bh7.15 2.28.1.8.1.1.1.029 OTU 1 seq prokMSA_id:033738 AF188164 Alpha MC-1 2.28.1.8.1.1.1.030 OTU 2 seqs prokMSA_id:034454 AF328158 clone KS2 prokMSA_id:044932 AF328159 clone KS3 2.28.1.8.1.1.1.031 OTU 1 seq prokMSA_id:034872 AF465360 Ruegeria sp. UST991130-042 2.28.1.8.1.1.1.033 OTU 50 seqs prokMSA_id:005640 AF098490 Sulfitobacter DSS-2 str. DSS-2. prokMSA_id:029384 AF142959 TAYNAYA-13 prokMSA_id:033581 AF186700 Sulfitobacter sp. MA2824 prokMSA_id:030176 AF254101 Abyssal strain AIII3 prokMSA_id:047852 AF277511 Sulfitobacter SIC.8141 prokMSA_id:048026 AF359531 Marine ATAM173a_16 prokMSA_id:052404 AF359532 Marine ATAM173a_17 prokMSA_id:050559 AF359533 Marine ATAM407_58 prokMSA_id:038580 AF359534 Marine SCRIPPS_732 prokMSA_id:038045 AF359536 Marine ATAM407_2031 prokMSA_id:035200 AF359537 Marine SCRIPPS_101 prokMSA_id:079613 AF468374 Arctic sea ice ARK10222 prokMSA_id:079787 AF468380 Arctic sea ice ARK9994 prokMSA_id:067627 AF489286 isolate L992 prokMSA_id:079547 AF505722 Alpha UMB3C prokMSA_id:019696 AJ278782 strain R7706 prokMSA_id:048599 AJ278783 strain R7091 prokMSA_id:028230 AJ293822 Antarctic seawater R7371 prokMSA_id:046595 AJ294354 Roseobacter 667-4 isolate 667-4 prokMSA_id:057757 AJ512209 Marine alpha LSc-11 prokMSA_id:073898 AJ515036 Sulfitobacter sp. WTs-4 isolate WTs-4 prokMSA_id:076761 AJ532580 Sulfitobacter sp. BIO-7 isolate BIO-7 prokMSA_id:075731 AJ534205 Sulfitobacter sp. BIO-11 isolate BIO-11 prokMSA_id:076942 AJ534209 Sulfitobacter sp. BIO-205 isolate BIO-205 prokMSA_id:076632 AJ534210 Sulfitobacter sp. DFL-10 isolate DFL-10 prokMSA_id:075267 AJ534212 Sulfitobacter sp. DFL-14 isolate DFL-14 prokMSA_id:076795 AJ534226 Sulfitobacter sp. HEL-45 isolate HEL-45 prokMSA_id:076797 AJ534227 Sulfitobacter sp. HEL-46 isolate HEL-46 prokMSA_id:076156 AJ534228 Sulfitobacter sp. HEL-76 isolate HEL-76 prokMSA_id:075405 AJ534229 Sulfitobacter sp. HEL-77 isolate HEL-77 prokMSA_id:074900 AJ534230 Sulfitobacter sp. HEL-78 isolate HEL-78 prokMSA_id:075166 AJ534232 Staleya sp. LM-4 isolate LM-4 prokMSA_id:075623 AJ534233 Staleya sp. LM-7 isolate LM-7 prokMSA_id:076438 AJ534236 Sulfitobacter sp. LM-11 isolate LM-11 prokMSA_id:075228 AJ534237 Sulfitobacter sp. LM-16 isolate LM-16 prokMSA_id:085401 AJ542654 Sulfitobacter pontiacus isolate 4301-10/3 prokMSA_id:083518 AJ542656 Sulfitobacter pontiacus isolate 4301-10/6 prokMSA_id:085267 AJ542658 Sulfitobacter sp. 4318-8/2 isolate 4318-8/2 prokMSA_id:083854 AJ550939 Oceanibulbus indoliflex strain Hel 45 prokMSA_id:077590 AY159887 Sulfitobacter pontiacus prokMSA_id:078127 AY172259 clone 2117 prokMSA_id:078686 AY180102 Sulfitobacter deliciae strain KMM 3554 prokMSA_id:078878 AY180103 Sulfitobacter dubium strain KMM 3584 prokMSA_id:080682 AY220710 alpha clone WCPAP6 prokMSA_id:097186 AY375125 clone F46 prokMSA_id:005642 U87407 str. S34. prokMSA_id:005639 Y13155 Sulfitobacter pontiacus str. ChLG 10 DSM 10014 . prokMSA_id:029924 Y16425 Sulfitobacter brevis strain Ekho Lake-162 prokMSA_id:032299 Y16427 Staleya guttiformis strain Ekho Lake-38 prokMSA_id:005631 Y17387 Sulfitobacter mediterraneus str. CH-B427. 2.28.1.8.1.1.1.034 OTU 4 seqs prokMSA_id:035270 AF245632 Roseobacter NAC11-3 prokMSA_id:045368 AF353235 Roseobacter sp. clone Arctic96A-1 prokMSA_id:074007 AY145589 alpha clone DC5-80-3 prokMSA_id:069570 AY145625 alpha clone DC11-80-2 2.28.1.8.1.1.1.035 OTU 1 seq prokMSA_id:036124 AF424292 alpha MERTZ_21CM_146 2.28.1.8.1.1.1.036 OTU 2 seqs prokMSA_id:041049 AF417896 antarctic soil clone bh3.3 prokMSA_id:038263 AF419281 antarctic soil clone bh7.13 2.28.1.8.1.1.1.037 OTU 1 seq prokMSA_id:042628 AF064558 Paracoccus sp. 164 2.28.1.8.1.1.1.038 OTU 1 seq prokMSA_id:042665 AF328161 clone KS5 2.28.1.8.1.1.1.039 OTU 1 seq prokMSA_id:045295 AF353234 Roseobacter sp. clone Arctic96A-8 2.28.1.8.1.1.1.040 OTU 1 seq prokMSA_id:046473 AF143829 clone 4-Org2-20 2.28.1.8.1.1.1.041 OTU 1 seq prokMSA_id:060361 AF513439 Roseobacter sp. LA9 2.28.1.8.1.1.1.042 OTU 1 seq prokMSA_id:073702 AF254102 Slope strain DI4 2.28.1.8.1.1.1.043 OTU 1 seq prokMSA_id:048018 AB077341 alpha clone:TYM--4 2.28.1.8.1.1.1.044 OTU 1 seq prokMSA_id:069921 AF513400 Rhodobacter sp. 1-5 2.28.1.8.1.1.1.045 OTU 1 seq prokMSA_id:048257 AJ391181 marine alpha AS-19 2.28.1.8.1.1.1.046 OTU 1 seq prokMSA_id:049670 AF328167 clone KS14 2.28.1.8.1.1.1.047 OTU 1 seq prokMSA_id:050030 AF259608 Roseobacter CtaxMed-50 2.28.1.8.1.1.1.048 OTU 1 seq prokMSA_id:050513 AF142871 BURTON-53 2.28.1.8.1.1.1.049 OTU 1 seq prokMSA_id:052028 AF170774 alpha QSSC8L-14 2.28.1.8.1.1.1.050 OTU 2 seqs prokMSA_id:071804 AF254105 Slope strain EI1* prokMSA_id:054244 AF254106 Slope strain DIII4* 2.28.1.8.1.1.1.051 OTU 1 seq prokMSA_id:059818 AY133373 clone BB2_174 2.28.1.8.1.1.1.054 OTU 1 seq prokMSA_id:061107 AF530154 Alpha MGP-112 2.28.1.8.1.1.1.055 OTU 1 seq prokMSA_id:061109 AF530151 Alpha MGP-80 2.28.1.8.1.1.1.056 OTU 2 seqs prokMSA_id:080429 AF468360 Arctic sea ice ARK10055 prokMSA_id:061128 AF530134 Alpha MGP-7 2.28.1.8.1.1.1.057 OTU 3 seqs prokMSA_id:061891 AF449222 alpha clone R103-B61 prokMSA_id:061886 AF449223 alpha clone R103-B28 prokMSA_id:061885 AF449224 alpha clone R103-B9 2.28.1.8.1.1.1.058 OTU 1 seq prokMSA_id:064152 AF477863 clone 35-UMH 8% pond 2.28.1.8.1.1.1.059 OTU 1 seq prokMSA_id:068669 AJ439357 Prionitis sp. GIg-5 isolate GIg-5 2.28.1.8.1.1.1.061 OTU 1 seq prokMSA_id:075251 AJ534235 Staleya sp. LM-10 isolate LM-10 2.28.1.8.1.1.1.062 OTU 1 seq prokMSA_id:075643 AJ534211 Jannaschia sp. DFL-12 isolate DFL-12 2.28.1.8.1.1.1.063 OTU 1 seq prokMSA_id:079185 AB100001 sequences clone: IndB1-58 2.28.1.8.1.1.1.064 OTU 1 seq prokMSA_id:079628 AY193262 clone BTM16 2.28.1.8.1.1.1.065 OTU 3 seqs prokMSA_id:079703 AY193259 clone BTM1 prokMSA_id:080715 AY193264 clone BTM18 prokMSA_id:079776 AY193266 clone BTM2 2.28.1.8.1.1.1.066 OTU 1 seq prokMSA_id:079812 AB094897 clone:OHKB7.40 2.28.1.8.1.1.1.067 OTU 2 seqs prokMSA_id:079894 AF468274 clone ARKIA-130 prokMSA_id:081512 AY165584 Arctic sea ice clone ARKXVI/2-130 2.28.1.8.1.1.1.068 OTU 1 seq prokMSA_id:079925 AY193221 clone BMS8 2.28.1.8.1.1.1.069 OTU 1 seq prokMSA_id:079945 AY193277 clone BTM55 2.28.1.8.1.1.1.070 OTU 1 seq prokMSA_id:079976 AY193272 clone BTM31 2.28.1.8.1.1.1.071 OTU 2 seqs prokMSA_id:080021 AY193226 clone BMS38 prokMSA_id:079985 AY193233 clone BMS95 2.28.1.8.1.1.1.072 OTU 1 seq prokMSA_id:080051 AB094909 clone:OHKB7.79 2.28.1.8.1.1.1.073 OTU 1 seq prokMSA_id:080138 AY193232 clone BMS84 2.28.1.8.1.1.1.074 OTU 1 seq prokMSA_id:080283 AB094851 clone:OHKB4.51 2.28.1.8.1.1.1.075 OTU 3 seqs prokMSA_id:080289 AF468352 Arctic sea ice ARK10013 prokMSA_id:080962 AF468354 Arctic sea ice ARK10021 prokMSA_id:080759 AY193218 clone BMS23 2.28.1.8.1.1.1.076 OTU 1 seq prokMSA_id:080486 AF468276 clone ARKIA-77 2.28.1.8.1.1.1.077 OTU 1 seq prokMSA_id:080514 AB094846 clone:OHKB4.43 2.28.1.8.1.1.1.078 OTU 1 seq prokMSA_id:080553 AY193225 clone BMS37 2.28.1.8.1.1.1.079 OTU 1 seq prokMSA_id:080622 AY193220 clone BMS28 2.28.1.8.1.1.1.080 OTU 1 seq prokMSA_id:080747 AB094948 clone:OHKB13.21 2.28.1.8.1.1.1.081 OTU 2 seqs prokMSA_id:080837 AY193227 clone BMS40 prokMSA_id:080994 AY193280 clone BTM79 2.28.1.8.1.1.1.082 OTU 1 seq prokMSA_id:080845 AB094906 clone:OHKB7.65 2.28.1.8.1.1.1.083 OTU 1 seq prokMSA_id:080884 AY193222 clone BMS9 2.28.1.8.1.1.1.084 OTU 1 seq prokMSA_id:081022 AB094889 clone:OHKB7.23 2.28.1.8.1.1.1.085 OTU 1 seq prokMSA_id:081023 AY193273 clone BTM32 2.28.1.8.1.1.1.086 OTU 2 seqs prokMSA_id:082344 AY167260 Roseobacter sp. ANT9270 prokMSA_id:081992 AY167262 Roseobacter sp. ANT9276a 2.28.1.8.1.1.1.087 OTU 1 seq prokMSA_id:082998 AJ557864 Marine arctic deep-sea HH8 2.28.1.8.1.1.1.088 OTU 16 seqs prokMSA_id:005648 AF100168 alpha Shippagan prokMSA_id:071580 AF173972 Roseobacter sp. KT0917 prokMSA_id:034794 AF277513 Sulfitobacter SIC.8163 prokMSA_id:080702 AF468378 Arctic sea ice associated ARK10278 prokMSA_id:061106 AF530153 Ruegeria sp. MGP-98 prokMSA_id:082006 AY165563 Antarctic sea ice clone ANTXI/4_14-133 prokMSA_id:081861 AY167254 Roseobacter sp. ANT909 prokMSA_id:082225 AY167263 Psychromonas sp. ANT9282b prokMSA_id:081324 AY167322 Sulfitobacter sp. ANT9115 prokMSA_id:089533 AY321379 clone H33 prokMSA_id:089826 AY321380 clone H29B prokMSA_id:090059 AY321384 clone H8 prokMSA_id:088094 AY321385 clone H54 prokMSA_id:089293 AY321428 clone H44 prokMSA_id:088645 AY321429 clone H46 prokMSA_id:089603 AY321432 clone H49 2.28.1.8.1.1.1.089 OTU 1 seq prokMSA_id:089787 AY327152 clone ZB54. 2.28.1.8.1.1.1.090 OTU 1 seq prokMSA_id:090067 AJ567586 alpha clone MBAE27 2.28.1.8.1.1.1.091 OTU 1 seq prokMSA_id:090604 AY321420 clone L41 2.28.1.8.1.1.1.092 OTU 2 seqs prokMSA_id:091878 AY332660 Roseobacter sp. TM1035 prokMSA_id:091381 AY332663 Roseobacter sp. TM1042 2.28.1.8.1.1.1.093 OTU 2 seqs prokMSA_id:093921 AY277266 Sulfitobacter sp. H24 prokMSA_id:093915 AY277267 Sulfitobacter sp. H25 2.28.1.8.1.1.1.094 OTU 1 seq prokMSA_id:094275 AY360522 clone BSBf1-20/40m 2.28.1.8.1.1.1.095 OTU 1 seq prokMSA_id:094417 AY373396 clone A120 complete 2.28.1.8.1.1.1.096 OTU 1 seq prokMSA_id:096153 AY375098 clone C64 2.28.1.8.1.1.1.097 OTU 1 seq prokMSA_id:097212 AY375130 clone F70 2.28.1.8.1.1.1.098 OTU 2 seqs prokMSA_id:097579 AY375057 clone B175 prokMSA_id:097814 AY375140 clone D23 2.28.1.8.1.1.1.099 OTU 1 seq prokMSA_id:098061 AY375142 clone D280 2.28.1.8.1.1.1.999 poor quality 101 seqs prokMSA_id:042959 AB022479 KC510 prokMSA_id:017340 AB041275 ECS5 prokMSA_id:038427 AB042416 Vestimentiferan symbiont TW-3 prokMSA_id:016520 AB058672 alpha clone:Loihi---8 prokMSA_id:097963 AB079794 Oil-susceptible OSB90 prokMSA_id:005638 AF007254 str. EE-36. prokMSA_id:005637 AF007257 clone GAI-21. prokMSA_id:005633 AF022393 clone ANG.clone 1a. prokMSA_id:005634 AF022394 clone ANG.clone 1c. prokMSA_id:005635 AF022395 clone ANG.clone 1g. prokMSA_id:047980 AF022396 alpha 'Egg.clone D44' prokMSA_id:041438 AF025323 Roseobacter sp. KAT10 prokMSA_id:050845 AF025567 Roseobacter sp. MED24 prokMSA_id:005647 AF030777 clone Adriatic86. prokMSA_id:005641 AF030780 clone Adriatic72. prokMSA_id:053549 AF055231 marine pC2-130 3' prokMSA_id:038623 AF055258 marine pC8-67 3' prokMSA_id:037104 AF114653 alpha SUR-FREE-32 prokMSA_id:020810 AF114680 alpha DCM-FREE-25 prokMSA_id:026727 AF141544 alpha clone CRE-PA76 prokMSA_id:037068 AF141545 alpha clone CRE-PA77 prokMSA_id:038655 AF142906 ORGANIC-4 prokMSA_id:049569 AF182018 Sulfitobacter pontiacus prokMSA_id:044395 AF194392 Agrobacterium kpc11f prokMSA_id:045243 AF211285 Sulfitobacter MT30 prokMSA_id:042349 AF216513 alpha Chae38-1 prokMSA_id:022877 AF245621 Roseobacter NAC1-9 prokMSA_id:025341 AF245631 Roseobacter NAC11-2 prokMSA_id:029458 AF277478 alpha SIC.42338 prokMSA_id:041671 AF287029 alpha EC-A40 prokMSA_id:056206 AF365750 clone BT60DS4BE3 prokMSA_id:055288 AF365788 clone BM89PA1BbD5 prokMSA_id:044306 AF367397 Rhodobacter group clone D101 prokMSA_id:028125 AF367399 Rhodobacter group clone D103 prokMSA_id:018613 AF432286 alpha FO-26d-1 prokMSA_id:036947 AF439410 alpha clone SIMO CL-S6-165 prokMSA_id:017089 AF439422 alpha clone SIMO CL-S6-177 prokMSA_id:038248 AF439425 alpha clone SIMO CL-S6-180 prokMSA_id:018061 AF439429 alpha clone SIMO CL-S6-184 prokMSA_id:035799 AF442013 alpha clone CD12D6 prokMSA_id:039833 AF460892 Marine SIMO-IS223 prokMSA_id:069561 AF466897 alpha isolate DGGE band C'7 prokMSA_id:079665 AF468371 Arctic sea ice ARK10195 prokMSA_id:041263 AF473914 alpha 128-19 prokMSA_id:044540 AF473940 alpha 128-7 prokMSA_id:064155 AF477858 clone 24-UMH 8% pond prokMSA_id:066450 AF497863 alpha isolate WM8-14 prokMSA_id:066452 AF497864 alpha isolate WM11-36 prokMSA_id:069566 AF544898 alpha clone A191-9 prokMSA_id:058048 AF547424 alpha clone CL-S77-312 prokMSA_id:058043 AF547425 alpha clone CL-S77-313 prokMSA_id:073361 AJ240922 alpha CHAB-III-5 5' prokMSA_id:039204 AJ240923 alpha CHAB-III-5 3' prokMSA_id:043820 AJ298354 marine alpha BY-81 prokMSA_id:030605 AJ298355 marine alpha AY-51 prokMSA_id:073139 AJ298357 marine alpha AY-57 prokMSA_id:016424 AJ315684 Alpha ML30 strain ML30 prokMSA_id:017581 AJ315685 Alpha ML45 strain ML45 prokMSA_id:059243 AJ319840 SB-40-TW prokMSA_id:074019 AJ319844 SB-59-AG prokMSA_id:070006 AJ431349 alpha isolate ikaite un-c7 prokMSA_id:072021 AJ515035 Rhodobacteraceae LSc-10 isolate LSc-10 prokMSA_id:057041 AJ518508 clone Qui2P2-44 prokMSA_id:075085 AJ534234 Staleya sp. LM-9 isolate LM-9 prokMSA_id:087448 AJ561145 alpha clone ANT-AC 04 prokMSA_id:086859 AJ561156 alpha clone RB_OIL 209 prokMSA_id:089094 AJ568007 alpha isolate DGGE-15-38 prokMSA_id:050649 AY038411 alpha clone CD5C3 prokMSA_id:044543 AY038486 alpha clone CD1G9 prokMSA_id:020878 AY038530 alpha clone CD1D9 prokMSA_id:045977 AY038531 alpha clone CD4C7 prokMSA_id:024352 AY038532 alpha clone CD1D4 prokMSA_id:017690 AY038550 alpha clone CD1E2 prokMSA_id:074520 AY038920 Marine SE62 prokMSA_id:066668 AY090122 Sulfitobacter sp. clone IAFDn44 prokMSA_id:065160 AY095607 alpha pA-4 prokMSA_id:065026 AY095821 Rhodobacter group ARCT2-5 prokMSA_id:066120 AY100684 Alpha L63 prokMSA_id:063185 AY117762 alpha isolate DGGE band A-3 prokMSA_id:073407 AY145593 alpha clone DC5-80-7 prokMSA_id:057340 AY149624 Marine SIMO IS-S76-282 prokMSA_id:056825 AY149759 alpha SIMO CL-S30-89 prokMSA_id:056805 AY149785 alpha SIMO CL-S29-22 prokMSA_id:056806 AY149786 alpha SIMO CL-S29-24 prokMSA_id:056796 AY149804 alpha SIMO CL-S29-45 prokMSA_id:056789 AY149812 alpha SIMO CL-S29-53 prokMSA_id:077425 AY165493 Rhodobacteraceae clone RCA11-3a prokMSA_id:079701 AY193270 clone BTM8 prokMSA_id:083490 AY226047 marine cyanobacterium clone pB-15R prokMSA_id:091036 AY258612 alpha DGGE Band 14 prokMSA_id:089858 AY317120 Alpha SKA53 prokMSA_id:088628 AY323141 alpha clone A115-23 prokMSA_id:090263 AY323147 alpha clone A115-14t prokMSA_id:089691 AY323152 alpha clone A133-52 prokMSA_id:092544 AY353551 Rhodobacteraceae isolate DGGE gel band AFB-1 prokMSA_id:092719 AY353562 Rhodobacteraceae isolate DGGE gel band FB-1 prokMSA_id:093784 AY360492 clone BSB11-115m prokMSA_id:005652 M59063 Roseobacter denitrificans str. OCh 114 . prokMSA_id:005643 U58348 str. EE-36. prokMSA_id:021671 U64009 Alpha SCB32 prokMSA_id:018985 X86469 Roseobacter sp. JLN-A530 strain 2.28.1.8.1.1.2 RG.ALGICOLA_SUBGROUP 282 seqs 2.28.1.8.1.1.2.001 OTU 1 seq prokMSA_id:005679 D85831 unnamed organism. 2.28.1.8.1.1.2.002 OTU 1 seq prokMSA_id:005678 AF142898 clone EKHO-15. 2.28.1.8.1.1.2.003 OTU 1 seq prokMSA_id:005677 AF142913 Roseovarius ORGANIC-11. 2.28.1.8.1.1.2.004 OTU 1 seq prokMSA_id:005676 AF142914 clone ORGANIC-12. 2.28.1.8.1.1.2.005 OTU 2 seqs prokMSA_id:032029 AF359526 Marine ALUS253_43 prokMSA_id:005675 Y11551 Roseovarius tolerans str. EL-172 DSM 11457 . 2.28.1.8.1.1.2.007 OTU 2 seqs prokMSA_id:025112 AJ002563 Marine isolate SRF1 prokMSA_id:005669 AJ002564 str. SRF2. 2.28.1.8.1.1.2.008 OTU 1 seq prokMSA_id:005668 AF159652 clone HstpL78. 2.28.1.8.1.1.2.009 OTU 1 seq prokMSA_id:005667 AF159650 clone HstpL28. 2.28.1.8.1.1.2.010 OTU 6 seqs prokMSA_id:005662 AF124521 Ruegeria atlantica str. WNA2. prokMSA_id:020730 AF277473 alpha SIC.174 prokMSA_id:029620 AF365993 Marine alpha BBAT2 prokMSA_id:040433 AF365995 Marine alpha BBAT4 prokMSA_id:077585 AY172281 clone 11 prokMSA_id:084010 AY265806 Ruegeria sp. SDC-1 2.28.1.8.1.1.2.011 OTU 1 seq prokMSA_id:005661 AB013442 str. ISHR1. 2.28.1.8.1.1.2.013 OTU 1 seq prokMSA_id:005658 AF170751 Roseobacter QSSC9-8 str. QSSC9-8. 2.28.1.8.1.1.2.015 OTU 3 seqs prokMSA_id:005655 AF098495 Roseobacter ISM str. ISM. prokMSA_id:055518 AJ515043 Roseovarius sp. WPl-3 isolate WPl-3 prokMSA_id:083398 AY177714 Rhodobacteraceae T11 2.28.1.8.1.1.2.018 OTU 9 seqs prokMSA_id:017095 AF190210 Alpha RS29AI4 prokMSA_id:076304 AJ294335 Alpha HY-103 isolate HY-103 prokMSA_id:044513 AJ391174 marine alpha AS-11 prokMSA_id:057754 AJ512210 Marine alpha LIg-4 prokMSA_id:057753 AJ512211 Marine alpha WTs-5 prokMSA_id:069263 AY145563 Alpha AP-26 prokMSA_id:080445 AY193214 clone BMS16 prokMSA_id:079622 AY193216 clone BMS18 prokMSA_id:079969 AY193228 clone BMS49 2.28.1.8.1.1.2.019 OTU 1 seq prokMSA_id:018019 AF259605 Rhodobacter group CtaxMed-9 2.28.1.8.1.1.2.022 OTU 2 seqs prokMSA_id:021303 AF253467 Alpha Y3F prokMSA_id:027170 AF388307 Marine Y4I 2.28.1.8.1.1.2.023 OTU 1 seq prokMSA_id:021918 AF328228 clone KS97 2.28.1.8.1.1.2.024 OTU 1 seq prokMSA_id:022037 Z88582 isolate HRV4# HpaAS2 2.28.1.8.1.1.2.025 OTU 1 seq prokMSA_id:022338 AF245625 Roseobacter NAC1-16 2.28.1.8.1.1.2.026 OTU 1 seq prokMSA_id:022534 AF328173 clone KS24 2.28.1.8.1.1.2.028 OTU 1 seq prokMSA_id:059165 AY136135 Roseobacter sp. RED85 2.28.1.8.1.1.2.029 OTU 1 seq prokMSA_id:059164 AY136101 Roseobacter sp. MED001 2.28.1.8.1.1.2.030 OTU 1 seq prokMSA_id:059161 AY136107 Roseobacter sp. MED61 2.28.1.8.1.1.2.031 OTU 1 seq prokMSA_id:025637 AF328171 clone KS19 2.28.1.8.1.1.2.032 OTU 2 seqs prokMSA_id:074704 AF170784 alpha QSSC9L-6 prokMSA_id:026009 AF170789 alpha QSSC9L-11 2.28.1.8.1.1.2.033 OTU 2 seqs prokMSA_id:040055 AF359544 Marine ATAM173a_9 prokMSA_id:026688 Y15348 Roseobacter sp. isolate PRLISY03 2.28.1.8.1.1.2.034 OTU 2 seqs prokMSA_id:044060 AF245634 Roseobacter NAC11-6 prokMSA_id:068973 AY033324 alpha MB11C09 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S 2.28.1.8.1.1.2.035 OTU 1 seq prokMSA_id:027774 AF254107 Hydrothermal vent strain NF18 2.28.1.8.1.1.2.036 OTU 2 seqs prokMSA_id:028284 AF254103 Slope strain EI2 prokMSA_id:030598 AF254104 Slope strain DI4* 2.28.1.8.1.1.2.037 OTU 1 seq prokMSA_id:029281 AB041283 ECS11 2.28.1.8.1.1.2.038 OTU 2 seqs prokMSA_id:045067 AF245614 Roseobacter NAC1-1 prokMSA_id:029579 AF245630 Roseobacter NAC11-1 2.28.1.8.1.1.2.039 OTU 1 seq prokMSA_id:029766 AF259627 Roseovarius CtaxPhil-46 2.28.1.8.1.1.2.040 OTU 10 seqs prokMSA_id:065131 AY095678 Rhodobacter group OR-104 prokMSA_id:065126 AY095685 Rhodobacter group OR-115 prokMSA_id:064908 AY095875 alpha pT-402 prokMSA_id:064897 AY095884 alpha pT-425 prokMSA_id:056502 AY095898 Rhodobacter group SH-4 prokMSA_id:033017 U84017 marine prokMSA_id:048637 U84020 marine prokMSA_id:029993 U84026 marine prokMSA_id:053633 U84034 marine prokMSA_id:048437 U84036 marine 2.28.1.8.1.1.2.041 OTU 1 seq prokMSA_id:030068 AF245615 Roseobacter NAC1-2 2.28.1.8.1.1.2.042 OTU 2 seqs prokMSA_id:030481 U84018 marine prokMSA_id:035714 U84035 marine 2.28.1.8.1.1.2.043 OTU 1 seq prokMSA_id:031026 AF328162 clone KS7 2.28.1.8.1.1.2.044 OTU 5 seqs prokMSA_id:073505 AF173971 Roseobacter sp. KT1117 prokMSA_id:080596 AF468302 clone ARKICE-75 prokMSA_id:080690 AF468375 Arctic sea ice ARK10226 prokMSA_id:031827 AJ391187 marine alpha AS-26 prokMSA_id:079919 AY193230 clone BMS60 2.28.1.8.1.1.2.045 OTU 1 seq prokMSA_id:033746 AF365996 Marine alpha BBFL1 2.28.1.8.1.1.2.046 OTU 1 seq prokMSA_id:034456 AF259626 Roseobacter CtaxPhil-27 2.28.1.8.1.1.2.047 OTU 2 seqs prokMSA_id:039391 AF235129 alpha KTc0993 prokMSA_id:050766 AJ240910 alpha CHAB-I-5 5' 2.28.1.8.1.1.2.048 OTU 1 seq prokMSA_id:040912 AF143831 clone 4-Org2-24 2.28.1.8.1.1.2.049 OTU 2 seqs prokMSA_id:042048 AF254108 Hydrothermal vent strain AG33 prokMSA_id:045968 AF388308 Marine SE45 2.28.1.8.1.1.2.050 OTU 1 seq prokMSA_id:044588 AJ244805 Alpha SOGA28 2.28.1.8.1.1.2.051 OTU 1 seq prokMSA_id:044621 AB041273 ECS3 2.28.1.8.1.1.2.054 OTU 1 seq prokMSA_id:045540 AF259607 Ruegeria CtaxMed-39 2.28.1.8.1.1.2.055 OTU 1 seq prokMSA_id:046585 AF328229 clone KS98 2.28.1.8.1.1.2.056 OTU 1 seq prokMSA_id:048261 AY038430 clone CD5A8 2.28.1.8.1.1.2.057 OTU 27 seqs prokMSA_id:005657 AF022392 str. 303. prokMSA_id:005659 AF026462 Roseobacter J2W. prokMSA_id:005660 AF026463 Roseobacter J8W. prokMSA_id:020502 AF359535 Marine ATAM407_56 prokMSA_id:042872 AF365992 Marine alpha BBAT1 prokMSA_id:032894 AF365994 Marine alpha BBAT3 prokMSA_id:049265 AJ244795 Alpha SOGA18 prokMSA_id:049863 AJ244810 Alpha SOGA34 prokMSA_id:028150 AJ294353 Roseobacter 667-2 isolate 667-2 prokMSA_id:040286 AJ296158 marine PP-154 prokMSA_id:076326 AJ534238 Roseobacter sp. PIC-68 isolate PIC-68 prokMSA_id:090272 AJ536669 Roseobacter sp. 27-4 isolate 27-4 prokMSA_id:088862 AJ536670 Roseobacter sp. 8-1 isolate 8-1 prokMSA_id:045273 AY005463 Ruegeria sp. MB2 prokMSA_id:029429 AY007679 Unknown marine alpha JP7.1 prokMSA_id:041631 AY007684 Unknown marine alpha JP88.1 prokMSA_id:059166 AY136134 Roseobacter gallaeciensis prokMSA_id:077822 AY172273 clone 311 prokMSA_id:077613 AY172293 clone 319 prokMSA_id:077801 AY172303 clone 321 prokMSA_id:083687 AY177712 Rhodobacteraceae T5 prokMSA_id:086015 AY239003 Marine HP12 prokMSA_id:005670 X78313 Ruegeria algicola str. ML4 ATCC 51441. prokMSA_id:005671 X78314 Ruegeria algicola str. FF2 ATCC 51442. prokMSA_id:005666 X78315 Ruegeria algicola str. T-FF3 ATCC 51440 . prokMSA_id:016469 X86467 Roseobacter sp. JLN-A020 strain prokMSA_id:005654 Y13244 Roseobacter gallaeciensis str. BS107 CIP 105210 . 2.28.1.8.1.1.2.058 OTU 1 seq prokMSA_id:052602 AF328227 clone KS96 2.28.1.8.1.1.2.059 OTU 1 seq prokMSA_id:055371 AF254109 Hydrothermal vent strain TB66 2.28.1.8.1.1.2.060 OTU 2 seqs prokMSA_id:060398 AF513438 Roseobacter sp. LA7 prokMSA_id:062509 AF513928 Rhodobacter group clone LA1-B32N 2.28.1.8.1.1.2.061 OTU 1 seq prokMSA_id:061254 AJ505786 alpha isolate PH32 2.28.1.8.1.1.2.062 OTU 2 seqs prokMSA_id:061951 AJ244714 Roseobacter-like sp. V4.ME.23 prokMSA_id:073128 AY043327 Alpha G100 2.28.1.8.1.1.2.063 OTU 1 seq prokMSA_id:062731 AF507828 alpha clone ML635J-2 2.28.1.8.1.1.2.064 OTU 1 seq prokMSA_id:065004 AY095904 alpha SH-106 2.28.1.8.1.1.2.065 OTU 1 seq prokMSA_id:065017 AY095838 ARCT2-37 2.28.1.8.1.1.2.066 OTU 1 seq prokMSA_id:068671 AJ439356 Ruegeria sp. RTs-2 isolate RTs-2 2.28.1.8.1.1.2.067 OTU 2 seqs prokMSA_id:071324 AJ515038 Ruegeria sp. TCg-3 isolate TCg-3 prokMSA_id:091113 AY332661 Roseobacter sp. TM1038 2.28.1.8.1.1.2.068 OTU 1 seq prokMSA_id:075244 AF344289 Alpha GL1 2.28.1.8.1.1.2.069 OTU 1 seq prokMSA_id:075789 AF344288 Alpha GL2 2.28.1.8.1.1.2.070 OTU 1 seq prokMSA_id:077690 AY172288 clone 336 2.28.1.8.1.1.2.071 OTU 4 seqs prokMSA_id:077830 AY172284 clone 33 prokMSA_id:078068 AY172285 clone 314 prokMSA_id:078073 AY172299 clone 31 prokMSA_id:077996 AY172307 clone 38 2.28.1.8.1.1.2.072 OTU 1 seq prokMSA_id:078060 AY172297 clone 132 2.28.1.8.1.1.2.073 OTU 1 seq prokMSA_id:079260 AB100002 sequences clone: IndB2-5 2.28.1.8.1.1.2.074 OTU 1 seq prokMSA_id:079666 AY193271 clone BTM9 2.28.1.8.1.1.2.076 OTU 1 seq prokMSA_id:079734 AY193284 clone BTM95 2.28.1.8.1.1.2.077 OTU 3 seqs prokMSA_id:079810 AF468376 Arctic sea ice ARK10233 prokMSA_id:081959 AY167253 Roseobacter sp. ANT9082 prokMSA_id:082093 AY167321 Roseobacter sp. ANT9283 2.28.1.8.1.1.2.078 OTU 2 seqs prokMSA_id:080552 AY193229 clone BMS51 prokMSA_id:079877 AY193267 clone BTM26 2.28.1.8.1.1.2.079 OTU 1 seq prokMSA_id:080098 AB094841 clone:OHKB4.31 2.28.1.8.1.1.2.080 OTU 1 seq prokMSA_id:080185 AY193261 clone BTM15 2.28.1.8.1.1.2.081 OTU 1 seq prokMSA_id:080454 AY193263 clone BTM17 2.28.1.8.1.1.2.082 OTU 1 seq prokMSA_id:080732 AY193276 clone BTM51 2.28.1.8.1.1.2.083 OTU 1 seq prokMSA_id:080824 AB094849 clone:OHKB4.48 2.28.1.8.1.1.2.084 OTU 1 seq prokMSA_id:080849 AB094834 clone:OHKB4.9 2.28.1.8.1.1.2.085 OTU 2 seqs prokMSA_id:080890 AY193231 clone BMS82 prokMSA_id:083188 AY239008 Marine HP29w 2.28.1.8.1.1.2.086 OTU 1 seq prokMSA_id:080899 AY193217 clone BMS21 2.28.1.8.1.1.2.087 OTU 1 seq prokMSA_id:080906 AF468367 Arctic sea ice ARK10115 2.28.1.8.1.1.2.088 OTU 1 seq prokMSA_id:080954 AB094845 clone:OHKB4.42 2.28.1.8.1.1.2.090 OTU 5 seqs prokMSA_id:080030 AF468366 Arctic sea ice ARK10109 prokMSA_id:079700 AF468373 Arctic sea ice associated ARK10207 prokMSA_id:081378 AY167339 Roseobacter sp. ARK9990 prokMSA_id:089690 AY321381 clone H41 prokMSA_id:088255 AY321396 clone L24 2.28.1.8.1.1.2.091 OTU 3 seqs prokMSA_id:081400 AY167257 Roseobacter sp. ANT9234 prokMSA_id:082275 AY167259 Roseobacter sp. ANT9240 prokMSA_id:081559 AY167261 Roseobacter sp. ANT9274 2.28.1.8.1.1.2.092 OTU 1 seq prokMSA_id:081687 AY165567 Antarctic sea ice clone ANTXI/4_14-43 2.28.1.8.1.1.2.093 OTU 1 seq prokMSA_id:086675 AY247160 AgA1 2.28.1.8.1.1.2.094 OTU 1 seq prokMSA_id:088726 AY321387 clone K106 2.28.1.8.1.1.2.095 OTU 1 seq prokMSA_id:091172 AY349458 Roseobacter sp. WHOI JT-22 2.28.1.8.1.1.2.096 OTU 1 seq prokMSA_id:091845 AY345438 K2-11 2.28.1.8.1.1.2.097 OTU 2 seqs prokMSA_id:095955 AY424896 Oceanicola granulosus strain HTCC2516 prokMSA_id:097673 AY424897 Oceanicola granulosus strain HTCC2523 2.28.1.8.1.1.2.098 OTU 1 seq prokMSA_id:096072 AY375100 clone C72 2.28.1.8.1.1.2.999 poor quality 114 seqs prokMSA_id:049056 AB041272 ECS2 prokMSA_id:034986 AB041274 ECS4 prokMSA_id:005673 AF007249 clone GAC-1. prokMSA_id:005664 AF007250 clone GAC-2. prokMSA_id:005665 AF007251 clone GAC-3. prokMSA_id:005674 AF007253 clone GAC-8. prokMSA_id:005663 AF007256 clone GAI-5. prokMSA_id:042076 AF022397 alpha 'Egg.clone D39' prokMSA_id:045653 AF025316 Roseobacter sp. KAT3 prokMSA_id:052565 AF025549 Roseobacter sp. MED6 prokMSA_id:039576 AF111862 UPB G7 prokMSA_id:029090 AF177547 marine D003 prokMSA_id:027011 AF177553 marine D013 prokMSA_id:037297 AF177555 marine D015 prokMSA_id:049710 AF177557 marine D017 prokMSA_id:039893 AF177560 marine D024 prokMSA_id:016479 AF190747 Roseobacter sp. SIO prokMSA_id:017297 AF211283 alpha CE104 prokMSA_id:045169 AF211284 Roseovarius tolerans MT68 prokMSA_id:038110 AF211286 Roseobacter CE58 prokMSA_id:028589 AF216508 alpha Pleur2-e1 prokMSA_id:023231 AF231433 Humic substances enrichment clone A32 prokMSA_id:046552 AF245637 Roseobacter NAC11-12 prokMSA_id:047350 AF261065 Roseobacter sp. SKA44 prokMSA_id:032164 AF287021 alpha EC-I50 prokMSA_id:068296 AF361670 clone MN12BT3-39 prokMSA_id:068258 AF365460 clone BM89MF1BC7 prokMSA_id:068192 AF365533 clone BM89MF5BH1b prokMSA_id:068163 AF365569 clone BT49MF4BE10 prokMSA_id:068140 AF365594 clone BT60MF2BG5 prokMSA_id:068085 AF365658 clone BM89DS6BbB9 prokMSA_id:074669 AF365731 clone BT60DS4BB3 prokMSA_id:068004 AF365752 clone BT60DS4BE7 prokMSA_id:067998 AF365761 clone BT60DS4BF8 prokMSA_id:047757 AF367381 Rhodobacter group clone D045 prokMSA_id:025932 AF367400 Rhodobacter group clone D135 prokMSA_id:021624 AF367402 Rhodobacter group clone D128 prokMSA_id:023711 AF367403 Rhodobacter group clone D129 prokMSA_id:024682 AF432316 alpha 0%N-26d-20 prokMSA_id:052647 AF439413 alpha clone SIMO CL-S6-168 prokMSA_id:019408 AF439414 alpha clone SIMO CL-S6-169 prokMSA_id:048193 AF439415 alpha clone SIMO CL-S6-170 prokMSA_id:019315 AF439416 alpha clone SIMO CL-S6-171 prokMSA_id:043676 AF439417 alpha clone SIMO CL-S6-172 prokMSA_id:023796 AF439418 alpha clone SIMO CL-S6-173 prokMSA_id:037616 AF439421 alpha clone SIMO CL-S6-176 prokMSA_id:039839 AF439424 alpha clone SIMO CL-S6-179 prokMSA_id:027614 AF439427 alpha clone SIMO CL-S6-182 prokMSA_id:044133 AF439428 alpha clone SIMO CL-S6-183 prokMSA_id:028433 AF441884 alpha clone CD13H12 prokMSA_id:019518 AF441995 alpha clone CD12E9 prokMSA_id:049843 AF442001 alpha clone CD12E4 prokMSA_id:072563 AF466902 alpha isolate DGGE band A'5 prokMSA_id:033748 AF473910 alpha 128-14 prokMSA_id:044016 AF473938 alpha 128-64 prokMSA_id:058834 AF534233 alpha clone alpha ca4 prokMSA_id:073423 AF544893 alpha clone A191-4 prokMSA_id:069473 AF544894 alpha clone A191-5 prokMSA_id:069379 AF544896 alpha clone A191-7 prokMSA_id:071308 AF544909 alpha clone A191-20 prokMSA_id:072362 AF544950 alpha clone 3-7-5 prokMSA_id:058071 AF547398 alpha clone CL-S77-276 prokMSA_id:058067 AF547399 alpha clone CL-S77-277 prokMSA_id:058061 AF547404 alpha clone CL-S77-291 prokMSA_id:058062 AF547405 alpha clone CL-S77-292 prokMSA_id:058060 AF547406 alpha clone CL-S77-293 prokMSA_id:058058 AF547413 alpha clone CL-S77-300 prokMSA_id:058051 AF547418 alpha clone CL-S77-305 prokMSA_id:058046 AF547428 alpha clone CL-S77-316 prokMSA_id:020147 AJ244794 Alpha SOGA17 prokMSA_id:022224 AJ244797 Alpha SOGA20 prokMSA_id:025229 AJ244798 Alpha SOGA21 prokMSA_id:071253 AJ250894 marine DIL-1 prokMSA_id:073867 AJ298356 marine alpha N-80 prokMSA_id:059240 AJ319843 SB-8/30-AG prokMSA_id:072777 AJ319854 SB-12-Cd prokMSA_id:056559 AJ319855 SB-46-DB prokMSA_id:033544 AJ416665 alpha clone env.S063 prokMSA_id:066163 AJ487525 clone NCh10-LL3 prokMSA_id:082740 AJ495605 alpha isolate SA-5 prokMSA_id:088245 AJ568013 alpha isolate DGGE-51 prokMSA_id:045168 AY038387 clone CD3C3 prokMSA_id:040328 AY038469 alpha clone CD2H3 prokMSA_id:038165 AY038533 clone CD1D3 prokMSA_id:029665 AY038571 alpha clone CD2AC12 prokMSA_id:065180 AY095578 Rhodobacter group pV-6 prokMSA_id:065158 AY095614 alpha pA-16 prokMSA_id:065098 AY095716 alpha NL-4F prokMSA_id:055517 AY095750 alpha NL-146 prokMSA_id:065019 AY095833 delta ARCT2-21 prokMSA_id:064993 AY095917 alpha SH-308 prokMSA_id:055927 AY095922 alpha SH-316 prokMSA_id:064984 AY095926 Rhodobacter group SH-323 prokMSA_id:063181 AY117766 alpha isolate DGGE band A-8 prokMSA_id:059200 AY136508 Alpha MA03 prokMSA_id:057335 AY149627 Marine SIMO IS-S76-285 prokMSA_id:057336 AY149628 Marine SIMO IS-S76-286 prokMSA_id:056815 AY149775 alpha SIMO CL-S29-11 prokMSA_id:056803 AY149790 alpha SIMO CL-S29-28 prokMSA_id:082511 AY241443 Alpha UST020129-036 prokMSA_id:085005 AY241445 Ruegeria sp. UST020129-013 prokMSA_id:088956 AY323144 alpha clone A115-30 prokMSA_id:090771 AY323148 alpha clone A115-7t prokMSA_id:090780 AY323184 alpha clone A134-5 prokMSA_id:005672 U62894 Marinosulfonomonas methylotropha str. PSCH4. prokMSA_id:043610 U64005 Roseobacter sp. SCB28 prokMSA_id:045615 U64008 Roseobacter sp. SCB31 prokMSA_id:018345 U64011 Roseobacter sp. SCB34 prokMSA_id:031428 U64025 Roseobacter sp. SCB48 prokMSA_id:031360 U78909 alpha prokMSA_id:024556 U84028 marine 3' prokMSA_id:026623 U84032 marine 3' prokMSA_id:042400 X86468 Roseobacter sp. JLN-A036 strain prokMSA_id:005656 Z77363 str. 1-140 C22. 2.28.1.8.1.1.3 ANB.HELIOTHERMUS_SUBGROUP 40 seqs 2.28.1.8.1.1.3.001 OTU 1 seq prokMSA_id:005685 U58356 Sagittula stellata str. E-37. 2.28.1.8.1.1.3.002 OTU 3 seqs prokMSA_id:073266 AF359538 Marine ATAM173a_51 prokMSA_id:050247 AJ294356 Antarctobacter sp. 667-12 strain 667-12 prokMSA_id:005683 Y11552 Antarctobacter heliothermus str. EL-219 DSM 11440 . 2.28.1.8.1.1.3.003 OTU 1 seq prokMSA_id:005680 L15345 str. LFR. 2.28.1.8.1.1.3.004 OTU 1 seq prokMSA_id:046583 AF259628 Antarctobacter CtaxPhil-52 2.28.1.8.1.1.3.005 OTU 1 seq prokMSA_id:072376 AJ515037 Antarctobacter sp. LTs-7 isolate LTs-7 2.28.1.8.1.1.3.006 OTU 2 seqs prokMSA_id:075332 AJ534207 Methylarcula sp. BIO-24 isolate BIO-24 prokMSA_id:076342 AJ534208 Methylarcula sp. BIO-204 isolate BIO-204 2.28.1.8.1.1.3.007 OTU 1 seq prokMSA_id:075890 AJ534206 Methylarcula sp. BIO-13 isolate BIO-13 2.28.1.8.1.1.3.008 OTU 1 seq prokMSA_id:077734 AY171321 clone s109 2.28.1.8.1.1.3.009 OTU 1 seq prokMSA_id:078099 AY171330 clone s38 2.28.1.8.1.1.3.010 OTU 1 seq prokMSA_id:080225 AY193269 clone BTM7 2.28.1.8.1.1.3.011 OTU 1 seq prokMSA_id:080897 AY193219 clone BMS25 2.28.1.8.1.1.3.012 OTU 1 seq prokMSA_id:096090 AY375073 clone B36 2.28.1.8.1.1.3.013 OTU 1 seq prokMSA_id:097422 AY375105 clone C8 2.28.1.8.1.1.3.999 poor quality 24 seqs prokMSA_id:005682 AF007258 clone GAI-26. prokMSA_id:005681 AF007260 clone GAI-37. prokMSA_id:046532 AF177552 marine D010 prokMSA_id:036176 AF177556 marine D016 prokMSA_id:017479 AF177566 marine D033 prokMSA_id:020634 AF216509 alpha AstGal11-m2 prokMSA_id:045040 AF296147 DMSP-degrading marine JA13 prokMSA_id:050578 AF296152 DMSP-degrading marine JA20 prokMSA_id:018070 AF296155 DMSP-degrading marine JA34 prokMSA_id:034644 AF367385 Rhodobacter group clone D058 prokMSA_id:038537 AF367386 Rhodobacter group clone D059 prokMSA_id:026287 AF369716 alpha clone 266 prokMSA_id:042687 AF432341 alpha 4%N-26d-25 prokMSA_id:018376 AF460946 Marine SIMO-IS205 prokMSA_id:081249 AF466715 alpha clone DBW3 prokMSA_id:056052 AF477853 clone 5-PML 8% pond prokMSA_id:069727 AF544883 alpha clone D1-38 prokMSA_id:058063 AF547407 alpha clone CL-S77-294 prokMSA_id:058053 AF547415 alpha clone CL-S77-302 prokMSA_id:063184 AY117763 alpha isolate DGGE band A-4 prokMSA_id:087916 AY268342 clone F6 small subunit prokMSA_id:005684 NONE str. 36 Nielsen. prokMSA_id:005687 U58354 clone 37SW-1. prokMSA_id:005686 U58355 clone 37SW-2. 2.28.1.8.1.1.4 STR.NF18_SUBGROUP 7 seqs 2.28.1.8.1.1.4.999 poor quality 7 seqs prokMSA_id:071011 AH001583 AG33 and genes prokMSA_id:073991 AH001584 NF18 and genes prokMSA_id:005688 M79372 str. AG33. prokMSA_id:074546 M79373 AG33 prokMSA_id:005689 M79390 str. NF18. prokMSA_id:070576 M79391 NF18 prokMSA_id:073872 M79392 NF18 2.28.1.8.1.1.5 OCT.ANTARCTICUS_SUBGROUP 433 seqs 2.28.1.8.1.1.5.005 OTU 17 seqs prokMSA_id:005716 AB026194 str. MBIC1876. prokMSA_id:005717 AB026492 str. MBIC1887. prokMSA_id:072473 AF360365 Alpha NP778 prokMSA_id:043019 AJ244780 Alpha SOGA1 prokMSA_id:050041 AJ244781 Alpha SOGA3 prokMSA_id:046822 AJ244786 Alpha SOGA8 prokMSA_id:027201 AJ244787 Alpha SOGA9 prokMSA_id:022001 AJ244789 Alpha SOGA11 prokMSA_id:049437 AJ244791 Alpha SOGA14 prokMSA_id:051444 AJ244802 Alpha SOGA25 prokMSA_id:021526 AJ391197 Ruegeria sp. AS-36 prokMSA_id:074518 AJ515044 Ruegeria sp. GIg-9 isolate GIg-9 prokMSA_id:089619 AY321430 clone H47 prokMSA_id:091589 AY332662 Roseobacter sp. TM1040 prokMSA_id:005714 D88526 Ruegeria atlantica str. 1480 IAM 14463 . prokMSA_id:005718 D88527 Agrobacterium meteori IAM 14464. prokMSA_id:005719 U77644 Silicibacter lacuscaerulensis str. ITI-1157. 2.28.1.8.1.1.5.006 OTU 2 seqs prokMSA_id:005715 AF098491 Silicibacter pomeroyi strain DSS-3 prokMSA_id:026146 AF434674 Silicibacter pomeroyi strain DSS-10 2.28.1.8.1.1.5.007 OTU 1 seq prokMSA_id:005713 AF142827 clone BURTON-7. 2.28.1.8.1.1.5.009 OTU 1 seq prokMSA_id:005711 AF142839 clone BURTON-19. 2.28.1.8.1.1.5.010 OTU 1 seq prokMSA_id:005709 AF142891 clone EKHO-8. 2.28.1.8.1.1.5.012 OTU 2 seqs prokMSA_id:005707 AB018689 str. MBIC3951. prokMSA_id:030122 AJ391183 marine alpha AS-22 2.28.1.8.1.1.5.013 OTU 18 seqs prokMSA_id:041244 AF245635 Roseobacter NAC11-7 prokMSA_id:017537 AJ400341 marine ZD0207 prokMSA_id:092680 AY354813 alpha clone PLY-P1-18 prokMSA_id:092556 AY354814 alpha clone PLY-P1-69 prokMSA_id:092693 AY354819 alpha clone PLY-P2-5 prokMSA_id:092725 AY354823 alpha clone PLY-P3-48 prokMSA_id:092722 AY354827 alpha clone PLY-P1-23 prokMSA_id:092469 AY354828 alpha clone PLY-P1-49 prokMSA_id:092539 AY354831 alpha clone PLY-P2-1 prokMSA_id:092494 AY354832 alpha clone PLY-P2-3 prokMSA_id:092723 AY354833 alpha clone PLY-P2-6 prokMSA_id:092478 AY354834 alpha clone PLY-P2-20 prokMSA_id:092063 AY354835 alpha clone PLY-P2-30 prokMSA_id:093014 AY354836 alpha clone PLY-P2-45 prokMSA_id:092383 AY354837 alpha clone PLY-P2-54 prokMSA_id:092901 AY354838 alpha clone PLY-P2-66 prokMSA_id:093031 AY354841 alpha clone PLY-P3-94 prokMSA_id:005706 U63548 unnamed organism. 2.28.1.8.1.1.5.014 OTU 2 seqs prokMSA_id:005704 AF114484 str. CV919-312. prokMSA_id:005705 AF114485 str. CV1010-362. 2.28.1.8.1.1.5.015 OTU 1 seq prokMSA_id:005703 AF098493 Roseobacter DSS-8 str. DSS-8. 2.28.1.8.1.1.5.016 OTU 1 seq prokMSA_id:005702 AF159653 clone HstpL95. 2.28.1.8.1.1.5.017 OTU 1 seq prokMSA_id:005701 D88523 Ruegeria gelatinovorans str. B6 IAM 12617 . 2.28.1.8.1.1.5.018 OTU 27 seqs prokMSA_id:047200 AF277539 Octadecabacter ARCTIC.128 prokMSA_id:043424 AF277545 Octadecabacter ARCTIC.235 prokMSA_id:080855 AF468299 clone ARKIA-135 prokMSA_id:080399 AF468321 clone ARKICE-158 prokMSA_id:080723 AF468355 Arctic sea ice ARK10026 prokMSA_id:080968 AF468356 Arctic sea ice ARK10029 prokMSA_id:080348 AF468361 Arctic sea ice ARK10073 prokMSA_id:081031 AF468362 Arctic sea ice ARK10081 prokMSA_id:080593 AF468363 Arctic sea ice ARK10090 prokMSA_id:080714 AF468364 Arctic sea ice ARK10092 prokMSA_id:080827 AF468365 Arctic sea ice ARK10099 prokMSA_id:079937 AF468368 Arctic sea ice associated ARK10126 prokMSA_id:079813 AF468369 Arctic sea ice ARK10175-1 prokMSA_id:080710 AF468370 Arctic sea ice ARK10176 prokMSA_id:081030 AF468372 Arctic sea ice ARK10197 prokMSA_id:080122 AF468377 Arctic sea ice ARK10249 prokMSA_id:080544 AF468379 Arctic sea ice ARK10285 prokMSA_id:081601 AY165579 Antarctic sea ice clone ANTXI/4_14-50 prokMSA_id:082421 AY167252 Octadecabacter sp. ANT9035 prokMSA_id:082271 AY167255 Octadecabacter sp. ANT9212 prokMSA_id:082065 AY167256 Octadecabacter sp. ANT9232 prokMSA_id:081431 AY167258 Octadecabacter sp. ANT9237 prokMSA_id:081135 AY167335 Octadecabacter sp. ANT9190 prokMSA_id:081453 AY167336 Octadecabacter sp. ANT9191 prokMSA_id:082085 AY167337 Octadecabacter sp. ANT9202 prokMSA_id:005690 U14583 Octadecabacter antarcticus str. 307. prokMSA_id:005697 U73725 Octadecabacter arcticus str. 238. 2.28.1.8.1.1.5.020 OTU 1 seq prokMSA_id:005695 AF142851 Octadecabacter BURTON-33. 2.28.1.8.1.1.5.021 OTU 1 seq prokMSA_id:005694 AF142900 clone EKHO-18. 2.28.1.8.1.1.5.022 OTU 4 seqs prokMSA_id:005692 AF098492 Roseobacter DSS-1 str. DSS-1. prokMSA_id:042922 AJ293823 Arctic seawater R7967 prokMSA_id:055242 AJ439361 alpha RSc-10 isolate RSc-10 prokMSA_id:068673 AJ439362 alpha RTs10 isolate RTs10 2.28.1.8.1.1.5.023 OTU 1 seq prokMSA_id:005691 U85840 Octadecabacter IC141 str. IC141. 2.28.1.8.1.1.5.024 OTU 1 seq prokMSA_id:016651 AF259606 Ruegeria CtaxMed-21 2.28.1.8.1.1.5.025 OTU 5 seqs prokMSA_id:042322 AF440697 Rhodobacter group ARCT1-1 prokMSA_id:016873 AF440715 Rhodobacter group ARCT1-37 prokMSA_id:047335 AF440723 Rhodobacter group ARCT1-53 prokMSA_id:055279 AY102029 Alpha HTCC152 prokMSA_id:077735 AY171302 clone s29 2.28.1.8.1.1.5.027 OTU 2 seqs prokMSA_id:031145 AF259592 Rhodobacter group CtaxAus-11 prokMSA_id:069008 AF259603 Rhodobacter group CtaxAus-27 2.28.1.8.1.1.5.028 OTU 3 seqs prokMSA_id:019392 AF259604 Ruegeria CtaxMed-2 prokMSA_id:051510 AF259619 Ruegeria CtaxMed-54 prokMSA_id:041842 AF259620 Ruegeria CtaxMed-66 2.28.1.8.1.1.5.029 OTU 2 seqs prokMSA_id:019627 AJ391195 marine alpha AS-34 prokMSA_id:026286 AJ391196 marine alpha AS-35 2.28.1.8.1.1.5.030 OTU 1 seq prokMSA_id:019900 AF259635 Rhodobacter group CtaxTah-4 2.28.1.8.1.1.5.034 OTU 1 seq prokMSA_id:022858 AF384141 Alpha NW4327 2.28.1.8.1.1.5.035 OTU 1 seq prokMSA_id:023397 AF259595 Rhodobacter group CtaxAus-40 2.28.1.8.1.1.5.036 OTU 2 seqs prokMSA_id:084036 AJ557871 Marine arctic deep-sea HD9 prokMSA_id:059174 AY136122 Roseobacter sp. RED1 2.28.1.8.1.1.5.037 OTU 1 seq prokMSA_id:059170 AY136132 Roseobacter sp. RED68 2.28.1.8.1.1.5.038 OTU 1 seq prokMSA_id:059163 AY136102 Roseobacter sp. MED006 2.28.1.8.1.1.5.039 OTU 6 seqs prokMSA_id:005712 AF142829 Octadecabacter BURTON-9. prokMSA_id:005710 AF142858 clone BURTON-40. prokMSA_id:033839 AF142958 TAYNAYA-12 prokMSA_id:005708 AF142961 clone TAYNAYA-15. prokMSA_id:026162 AF277512 alpha SIC.8142 prokMSA_id:021484 AF277525 alpha SIC.10342 2.28.1.8.1.1.5.040 OTU 13 seqs prokMSA_id:033574 AB046591 Filamentous photosynthetic Fl90-32 prokMSA_id:048228 AF194391 Agrobacterium kpc102rc prokMSA_id:041793 AF194393 Agrobacterium kpc36 prokMSA_id:033766 AJ294352 Roseobacter 253-16 isolate 253-16 prokMSA_id:026995 AJ295988 Ruegeria aff. gelatinovorans ch611 strain ch611 prokMSA_id:068672 AJ439358 Ruegeria sp. SPl-1 isolate SPl-1 prokMSA_id:068670 AJ439359 Ruegeria sp. GPl-3 isolate GPl-3 prokMSA_id:068674 AJ439360 Ruegeria sp. GIg-3 isolate GIg-3 prokMSA_id:080376 AY193224 clone BMS33 prokMSA_id:080431 AY193282 clone BTM82 prokMSA_id:091079 AY344411 clone K2-S-32 prokMSA_id:033660 Y15339 Roseobacter sp. isolate PRLIST02 prokMSA_id:071409 Y15346 Roseobacter sp. isolate PRLISY01 2.28.1.8.1.1.5.041 OTU 3 seqs prokMSA_id:069459 AJ515039 Ruegeria sp. LTs-2 isolate LTs-2 prokMSA_id:071983 AJ515040 Ruegeria sp. WRs-12 isolate WRs-12 prokMSA_id:069708 AJ515042 Ruegeria sp. TCg-9 isolate TCg-9 2.28.1.8.1.1.5.042 OTU 1 seq prokMSA_id:029277 AF259639 Ruegeria CtaxTah-30 2.28.1.8.1.1.5.043 OTU 3 seqs prokMSA_id:029287 AJ438157 Jannaschia helgolandensis strain Hel 10 prokMSA_id:075353 AJ534224 Jannaschia helgolandensis isolate HEL-26 prokMSA_id:075300 AJ534225 Jannaschia helgolandensis isolate HEL-43 2.28.1.8.1.1.5.044 OTU 1 seq prokMSA_id:030557 AB031658 alpha TIHP368-68 2.28.1.8.1.1.5.045 OTU 1 seq prokMSA_id:031063 AF469354 alpha CTD56B 2.28.1.8.1.1.5.046 OTU 2 seqs prokMSA_id:034779 AF365990 Marine alpha N67 prokMSA_id:084957 AY177716 Rhodobacteraceae TL 2.28.1.8.1.1.5.047 OTU 1 seq prokMSA_id:070710 AF143824 clone 4-Org1-37 2.28.1.8.1.1.5.048 OTU 6 seqs prokMSA_id:077382 AY165488 Rhodobacteraceae clone RCA10-2 prokMSA_id:077361 AY165489 Rhodobacteraceae clone RCA11-5 prokMSA_id:077536 AY165492 Rhodobacteraceae clone RCA11-2 prokMSA_id:093806 AY360517 clone BSBb3-20/40m prokMSA_id:093266 AY360519 clone BSBd6-20/40m prokMSA_id:035503 U70682 alpha OM65 2.28.1.8.1.1.5.049 OTU 1 seq prokMSA_id:041605 AF425758 alpha clone MERTZ_0CM_153 2.28.1.8.1.1.5.050 OTU 2 seqs prokMSA_id:041778 AF465361 Alpha UST991130-043 prokMSA_id:083010 AY241410 Alpha UST010723-016 2.28.1.8.1.1.5.051 OTU 1 seq prokMSA_id:056696 AY136124 Roseobacter sp. RED15 2.28.1.8.1.1.5.052 OTU 1 seq prokMSA_id:042895 AY038548 alpha clone CD4D3 2.28.1.8.1.1.5.053 OTU 1 seq prokMSA_id:043484 AF465355 Alpha UST991130-037 2.28.1.8.1.1.5.054 OTU 1 seq prokMSA_id:045883 AF259593 Ruegeria CtaxAus-25 2.28.1.8.1.1.5.055 OTU 1 seq prokMSA_id:046143 AF473915 alpha 128-19L 2.28.1.8.1.1.5.056 OTU 1 seq prokMSA_id:047325 AF259591 Ruegeria CtaxAus-6 2.28.1.8.1.1.5.057 OTU 1 seq prokMSA_id:047799 AF259636 Rhodobacter group CtaxTah-7 2.28.1.8.1.1.5.058 OTU 1 seq prokMSA_id:048392 AF259624 Rhodobacter group CtaxPhil-16 2.28.1.8.1.1.5.059 OTU 1 seq prokMSA_id:050418 AF473932 alpha 128-47L 2.28.1.8.1.1.5.060 OTU 1 seq prokMSA_id:054491 AF190211 alpha RSHD3E4 2.28.1.8.1.1.5.061 OTU 2 seqs prokMSA_id:061251 AJ505787 alpha isolate PH34 prokMSA_id:061250 AJ505788 alpha isolate GRP21 2.28.1.8.1.1.5.062 OTU 1 seq prokMSA_id:062503 AF513936 Rhodobacter group clone PH-B13 2.28.1.8.1.1.5.063 OTU 1 seq prokMSA_id:065159 AY095611 alpha pA-8 2.28.1.8.1.1.5.065 OTU 3 seqs prokMSA_id:020512 AF188165 Alpha KEppib5 prokMSA_id:068668 AJ439363 alpha LTs-4 isolate LTs-4 prokMSA_id:091134 AY345433 K2-19 2.28.1.8.1.1.5.066 OTU 1 seq prokMSA_id:068675 AJ439355 Ruegeria sp. WRs-11 isolate WRs-11 2.28.1.8.1.1.5.067 OTU 1 seq prokMSA_id:068920 AF365998 Marine alpha SB11 2.28.1.8.1.1.5.068 OTU 2 seqs prokMSA_id:068976 AY033321 Alpha R2A57 ; tRNA-Ala and tRNA-Ile genes complete ; and 23S prokMSA_id:095840 AY211668 alpha clone GoM GC234 022E 2.28.1.8.1.1.5.069 OTU 1 seq prokMSA_id:074573 AH005110 marine 5' 2.28.1.8.1.1.5.070 OTU 1 seq prokMSA_id:074722 AJ133762 alpha isolate TH1 2.28.1.8.1.1.5.072 OTU 10 seqs prokMSA_id:005696 AF170750 str. QSSC9-5. prokMSA_id:080016 AF468225 clone ARKCH2Br2-100 prokMSA_id:080873 AF468226 clone ARKCH2Br2-28 prokMSA_id:080857 AF468242 clone ARKDMS-62 prokMSA_id:080043 AF468275 clone ARKIA-72 prokMSA_id:084473 AJ440997 Antarctic R-8904 strain R-8904 prokMSA_id:076234 AJ534223 Methylarcula sp. DT-12 isolate DT-12 prokMSA_id:094053 AJ582225 Tanella fryxellensis strain LMG 22007T prokMSA_id:094029 AJ582228 Tanella salinilacus strain LMG 22000 prokMSA_id:093357 AJ582229 Tanella salinilacus strain LMG 22002 2.28.1.8.1.1.5.073 OTU 1 seq prokMSA_id:077184 AF344287 Alpha GL3 2.28.1.8.1.1.5.075 OTU 8 seqs prokMSA_id:017149 AF186699 Alpha MA2805 prokMSA_id:041652 AF473921 alpha 128-27L prokMSA_id:019540 AF473929 alpha 128-41L prokMSA_id:078028 AY172274 clone 113 prokMSA_id:077644 AY172276 clone 320 prokMSA_id:077974 AY172280 clone 317 prokMSA_id:078186 AY172291 clone 114 prokMSA_id:078334 AY172295 clone 323 2.28.1.8.1.1.5.076 OTU 1 seq prokMSA_id:079743 AY193260 clone BTM13 2.28.1.8.1.1.5.077 OTU 1 seq prokMSA_id:080071 AY193265 clone BTM19 2.28.1.8.1.1.5.078 OTU 1 seq prokMSA_id:080075 AB094833 clone:OHKB4.8 2.28.1.8.1.1.5.079 OTU 1 seq prokMSA_id:080443 AY193279 clone BTM77 2.28.1.8.1.1.5.080 OTU 1 seq prokMSA_id:080547 AB094918 clone:OHKB9.17 2.28.1.8.1.1.5.081 OTU 1 seq prokMSA_id:080862 AY193215 clone BMS17 2.28.1.8.1.1.5.082 OTU 1 seq prokMSA_id:080945 AY193283 clone BTM93 2.28.1.8.1.1.5.083 OTU 1 seq prokMSA_id:083098 AJ542657 Roseobacter sp. 4318-8/1 isolate 4318-8/1 2.28.1.8.1.1.5.084 OTU 1 seq prokMSA_id:083905 AY239007 Marine HP24 2.28.1.8.1.1.5.085 OTU 1 seq prokMSA_id:086328 AF539789 Rhodobacteraceae R11 2.28.1.8.1.1.5.086 OTU 1 seq prokMSA_id:091233 AY344384 clone L4-12 2.28.1.8.1.1.5.087 OTU 1 seq prokMSA_id:091368 AY345413 K2-53B 2.28.1.8.1.1.5.088 OTU 1 seq prokMSA_id:091370 AY349459 Roseobacter sp. WHOI JT-01 2.28.1.8.1.1.5.089 OTU 1 seq prokMSA_id:091740 AY349460 Roseobacter sp. WHOI JT-08 2.28.1.8.1.1.5.090 OTU 1 seq prokMSA_id:091772 AY345414 K2-53A 2.28.1.8.1.1.5.091 OTU 1 seq prokMSA_id:092004 AY135669 clone ANT18/2_19 2.28.1.8.1.1.5.092 OTU 1 seq prokMSA_id:092692 AY354817 alpha clone PLY-P1-113 2.28.1.8.1.1.5.093 OTU 2 seqs prokMSA_id:093537 AJ582226 Tanella vestfoldensis strain LMG 22003T prokMSA_id:094079 AJ582227 Tanella vestfoldensis strain LMG 22006 2.28.1.8.1.1.5.094 OTU 1 seq prokMSA_id:093904 AY360524 clone BSBf3-20/40m 2.28.1.8.1.1.5.095 OTU 1 seq prokMSA_id:095979 AY424898 Oceanicola batsensis strain HTCC2597 2.28.1.8.1.1.5.096 OTU 1 seq prokMSA_id:096425 AY375066 clone B104 2.28.1.8.1.1.5.999 poor quality 228 seqs prokMSA_id:027232 AB041271 ECS1 prokMSA_id:046528 AB041276 ECS6 prokMSA_id:016978 AB041277 ECS7 prokMSA_id:021020 AB041278 ECS8 prokMSA_id:043133 AB047139 SW3 prokMSA_id:033315 AB047140 SW3' prokMSA_id:021726 AB047143 SW8 prokMSA_id:097775 AB079795 Oil-susceptible OSB37 prokMSA_id:097965 AB079796 Oil-susceptible OSB32 prokMSA_id:084210 AB106185 Alpha FRA000001 prokMSA_id:085782 AB106186 Alpha FRA000001 prokMSA_id:035946 AF000288 marine prokMSA_id:005693 AF001377 Octadecabacter IC146 str. IC146. prokMSA_id:040742 AF001511 marine pG-21 prokMSA_id:005700 AF007255 clone GAI-3b. prokMSA_id:005698 AF010286 clone GAI-33. prokMSA_id:048104 AF025569 Roseobacter sp. MED26 prokMSA_id:043067 AF055248 marine pC2-43 3' prokMSA_id:020441 AF055249 marine pC2-5 prokMSA_id:016547 AF055257 marine pC8-67 5' prokMSA_id:043759 AF114660 alpha DCM-FREE-17 prokMSA_id:021261 AF141480 alpha clone CRE-FL64 prokMSA_id:021778 AF141557 alpha prokMSA_id:035075 AF142867 BURTON-49 prokMSA_id:022145 AF177546 marine D002 prokMSA_id:027085 AF177548 marine D004 prokMSA_id:038977 AF177549 marine D005 prokMSA_id:026869 AF177550 marine D006 prokMSA_id:074754 AF177551 marine D009 prokMSA_id:043595 AF177554 marine D014 prokMSA_id:023678 AF177558 marine D019 prokMSA_id:046840 AF177562 marine D028 prokMSA_id:047573 AF177564 marine D030 prokMSA_id:021101 AF177568 marine D049 prokMSA_id:026535 AF177569 marine D131 prokMSA_id:033654 AF194398 Roseobacter kpc14f prokMSA_id:021748 AF207853 marine OTU_E prokMSA_id:071805 AF216512 alpha ProCentr44-4 prokMSA_id:021989 AF245617 Roseobacter NAC1-4 prokMSA_id:074621 AF283846 Arctic sea ice AWS-4B3 prokMSA_id:048400 AF283847 Arctic sea ice AWS-6M1 prokMSA_id:034863 AF296154 DMSP-degrading marine JA19 prokMSA_id:075403 AF344290 alpha DGGE band GL7.2 prokMSA_id:075436 AF344295 alpha DGGE band GL2.3 prokMSA_id:068263 AF365452 clone BM89MF1BB6 prokMSA_id:068248 AF365470 clone BM89MF1BE6 prokMSA_id:068185 AF365542 clone BT49MF4BA1 prokMSA_id:068137 AF365599 clone BT60MF2BH12 prokMSA_id:068136 AF365600 clone BT60MF7BA10 prokMSA_id:068006 AF365753 clone BT60DS4BE8 prokMSA_id:067958 AF365813 clone BT60PA10BA4 prokMSA_id:035249 AF365997 Marine alpha BB2AT1 prokMSA_id:019633 AF367395 Rhodobacter group clone D099 prokMSA_id:029476 AF367396 Rhodobacter group clone D100 prokMSA_id:045006 AF432342 alpha 4%N-26d-32 prokMSA_id:039873 AF439420 alpha clone SIMO CL-S6-175 prokMSA_id:027624 AF439426 alpha clone SIMO CL-S6-181 prokMSA_id:021946 AF441944 alpha clone CD12C10 prokMSA_id:054909 AF441977 alpha clone CD12G3 prokMSA_id:022165 AF441987 alpha clone CD12F3 prokMSA_id:023030 AF441996 alpha clone CD12E8 prokMSA_id:081551 AF466710 gamma clone DBS7 prokMSA_id:072571 AF466884 alpha isolate DGGE band C8 prokMSA_id:069697 AF466885 alpha isolate DGGE band C14 prokMSA_id:070578 AF466921 alpha isolate DGGE band C40 prokMSA_id:071807 AF466928 alpha isolate DGGE band C20 prokMSA_id:023261 AF473913 alpha 128-18 prokMSA_id:020851 AF473920 alpha 128-27 prokMSA_id:023794 AF473928 alpha 128-41 prokMSA_id:050781 AF473931 alpha 128-47 prokMSA_id:035240 AF473933 alpha 128-49 prokMSA_id:035543 AF473934 alpha 128-5 prokMSA_id:037677 AF473965 alpha 34-27 prokMSA_id:033438 AF473972 alpha 34-47 prokMSA_id:042393 AF473973 alpha 34-48 prokMSA_id:026803 AF473977 34-63 prokMSA_id:052454 AF473978 alpha 34-65 prokMSA_id:066457 AF497859 alpha isolate WM5-49 prokMSA_id:066456 AF497860 alpha isolate WM8-15 prokMSA_id:066455 AF497861 alpha isolate WM11-37 prokMSA_id:066449 AF497867 alpha isolate WB11-28 prokMSA_id:074240 AF544882 alpha clone D1-36 prokMSA_id:074444 AF544890 alpha clone A191-1 prokMSA_id:073143 AF544906 alpha clone A191-17 prokMSA_id:069095 AF544926 alpha clone 4-6-1 prokMSA_id:069060 AF544939 alpha clone 4-7-1 prokMSA_id:069431 AF544943 alpha clone 14-1 prokMSA_id:073098 AF544945 alpha clone 14-20 prokMSA_id:057879 AF546906 clone E5-46-BF1-149 prokMSA_id:057873 AF546913 clone E5-46-BF1-157 prokMSA_id:057870 AF546917 clone E5-46-BF1-161 prokMSA_id:057866 AF546922 clone E5-46-BF1-166 prokMSA_id:057865 AF546923 clone E5-46-BF1-167 prokMSA_id:057864 AF546924 clone E5-46-BF1-168 prokMSA_id:057863 AF546926 clone E5-46-BF1-170 prokMSA_id:046632 AH005109 marine 5' prokMSA_id:019714 AJ242821 Marine 'DDGE band 1' mRNA clone band 1 prokMSA_id:070852 AJ242822 Marine 'DDGE band 5' mRNA clone band 5 prokMSA_id:032279 AJ242823 Marine 'DDGE band 6' mRNA clone band 6 prokMSA_id:047544 AJ244782 Alpha SOGA4 prokMSA_id:030077 AJ244783 Alpha SOGA5 prokMSA_id:043160 AJ244784 Alpha SOGA6 prokMSA_id:042154 AJ244788 Alpha SOGA10 prokMSA_id:028164 AJ244790 Alpha SOGA13 prokMSA_id:037269 AJ244803 Alpha SOGA26 prokMSA_id:027412 AJ244804 Alpha SOGA27 prokMSA_id:041661 AJ244808 Alpha SOGA32 prokMSA_id:070218 AJ298349 marine alpha BY-2 prokMSA_id:071724 AJ298350 marine alpha AY-41 prokMSA_id:072959 AJ298351 marine alpha AY-58 prokMSA_id:046669 AJ298352 marine alpha BY-74 prokMSA_id:049308 AJ298353 marine alpha BY-95 prokMSA_id:072252 AJ319841 SB-38-TW prokMSA_id:059226 AJ319859 SB-27-CS prokMSA_id:059225 AJ319860 SB-23-CS prokMSA_id:059224 AJ319863 SB-14/19-LD prokMSA_id:069367 AJ515041 Ruegeria sp. RIg-3 isolate RIg-3 prokMSA_id:087590 AJ561191 Alpha GA-36 isolate GA-36 prokMSA_id:027769 AY038492 alpha clone CD1H5 prokMSA_id:047875 AY038549 alpha clone CD1D12 prokMSA_id:018281 AY038923 Marine SE95 prokMSA_id:065186 AY095573 Rhodobacter group WR-44 prokMSA_id:056370 AY095576 alpha pV-3 prokMSA_id:065174 AY095588 alpha pV-27 prokMSA_id:065173 AY095589 alpha pV-28 prokMSA_id:065171 AY095592 alpha PPO-15 prokMSA_id:065170 AY095596 alpha pNS-1 prokMSA_id:065163 AY095604 alpha pA-1 prokMSA_id:065162 AY095605 alpha pA-2 prokMSA_id:065161 AY095608 alpha pA-5 prokMSA_id:065157 AY095609 alpha pA-6 prokMSA_id:065156 AY095610 Rhodobacter group pA-7 prokMSA_id:056424 AY095612 alpha pA-13 prokMSA_id:065154 AY095613 alpha pA-14 prokMSA_id:072793 AY095615 alpha pA-17 prokMSA_id:065153 AY095617 alpha pA-22 prokMSA_id:055557 AY095618 alpha pA-23 prokMSA_id:065152 AY095619 alpha pA-25 prokMSA_id:065140 AY095666 alpha OS2K-17 prokMSA_id:065121 AY095686 Rhodobacter group OR-117 prokMSA_id:065099 AY095715 alpha NL-3 prokMSA_id:065086 AY095730 alpha NL-123 prokMSA_id:065082 AY095733 alpha NL-126 prokMSA_id:065072 AY095745 alpha NL-143 prokMSA_id:065071 AY095746 alpha NL-144F prokMSA_id:065069 AY095749 alpha NL-145R prokMSA_id:065067 AY095752 alpha NL-148R prokMSA_id:065060 AY095759 alpha HI-4 prokMSA_id:065055 AY095765 Rhodobacter group HI-12 prokMSA_id:065029 AY095820 Rhodobacter group ARCT2-4 prokMSA_id:065023 AY095827 Rhodobacter group ARCT2-13 prokMSA_id:055439 AY117765 alpha isolate DGGE band A-7 prokMSA_id:063182 AY117767 alpha isolate DGGE band A-9 prokMSA_id:059816 AY133372 clone BB2_54 prokMSA_id:059158 AY136103 Roseobacter sp. MED007 prokMSA_id:071721 AY145588 alpha clone DC5-80-2 prokMSA_id:072896 AY145590 alpha clone DC5-80-4 prokMSA_id:070235 AY145594 alpha clone DC5-80-8 prokMSA_id:074011 AY145600 alpha clone DC8-80-0 prokMSA_id:073815 AY145602 alpha clone DC8-80-3 prokMSA_id:069309 AY145603 alpha clone DC8-80-4 prokMSA_id:074777 AY145624 alpha clone DC11-80-1 prokMSA_id:069553 AY145627 alpha clone DC11-80-5 prokMSA_id:074229 AY145628 alpha clone DC11-80-6 prokMSA_id:056818 AY149766 alpha SIMO CL-S30-97 prokMSA_id:056812 AY149777 alpha SIMO CL-S29-13 prokMSA_id:056810 AY149779 alpha SIMO CL-S29-15 prokMSA_id:056809 AY149782 alpha SIMO CL-S29-19 prokMSA_id:056801 AY149792 alpha SIMO CL-S29-32 prokMSA_id:055642 AY149798 alpha SIMO CL-S29-38 prokMSA_id:056795 AY149800 alpha SIMO CL-S29-40 prokMSA_id:056794 AY149802 alpha SIMO CL-S29-42 prokMSA_id:077342 AY165487 Rhodobacteraceae clone RCA10-1 prokMSA_id:077551 AY165490 Rhodobacteraceae clone RCA11-4 prokMSA_id:077369 AY165491 Rhodobacteraceae clone RCA11-3b prokMSA_id:077500 AY165495 Rhodobacteraceae clone RCA6 prokMSA_id:077413 AY165496 Rhodobacteraceae clone RCA2 prokMSA_id:077414 AY165497 Rhodobacteraceae clone RCA8 prokMSA_id:077416 AY165498 Rhodobacteraceae clone RCA5 prokMSA_id:077333 AY165499 Rhodobacteraceae clone RCA3 prokMSA_id:077542 AY165500 Rhodobacteraceae clone RCA9 prokMSA_id:077389 AY165501 Rhodobacteraceae clone RCA4 prokMSA_id:077329 AY165502 Rhodobacteraceae clone RCA7-1 prokMSA_id:077487 AY165503 Rhodobacteraceae clone RCA7-2 prokMSA_id:077546 AY165504 Rhodobacteraceae clone RCA12-1 prokMSA_id:077523 AY165505 Rhodobacteraceae clone RCA12-2 prokMSA_id:084960 AY241402 Alpha UST010723-007 prokMSA_id:082597 AY241403 Ruegeria sp. UST010723-008 prokMSA_id:091150 AY258605 alpha DGGE Band 7 prokMSA_id:091288 AY258610 alpha DGGE Band 12 prokMSA_id:083361 AY263714 alpha clone FBE5 prokMSA_id:086526 AY263727 alpha clone FBR13 prokMSA_id:084741 AY263731 alpha clone FBR17 prokMSA_id:084298 AY263732 alpha clone FBR18 prokMSA_id:086734 AY274228 alpha isolate DGGE band GWS-FL-2 prokMSA_id:087885 AY274229 alpha isolate DGGE band GWS-FL-3 prokMSA_id:086775 AY274236 alpha isolate DGGE band GWS-AG-2 prokMSA_id:087137 AY274237 alpha isolate DGGE band GWS-AG-3 prokMSA_id:088778 AY317121 Alpha SKA54 prokMSA_id:088691 AY323136 alpha clone A115-15 prokMSA_id:088793 AY323146 alpha clone A115-30t prokMSA_id:090491 AY323151 alpha clone A133-47 prokMSA_id:088756 AY323154 alpha clone A115-95t prokMSA_id:088450 AY323188 alpha clone A134-84 prokMSA_id:092175 AY353557 Rhodobacteraceae isolate DGGE gel band AB-5 prokMSA_id:092571 AY353558 Rhodobacteraceae isolate DGGE gel band AB-6 prokMSA_id:092838 AY353560 Rhodobacteraceae isolate DGGE gel band AB-8 prokMSA_id:005720 D85829 unnamed organism. prokMSA_id:040567 U64019 alpha prokMSA_id:023816 U70680 alpha OM42 prokMSA_id:030635 U78910 alpha prokMSA_id:071756 U78912 alpha prokMSA_id:020525 U78942 alpha prokMSA_id:027151 U84016 marine 3' prokMSA_id:040809 U84021 marine 5' prokMSA_id:043926 U84023 marine 5' prokMSA_id:040701 U84024 marine 5' prokMSA_id:048391 U84027 marine 5' prokMSA_id:028489 U84029 marine 5' prokMSA_id:035806 U84030 marine 5' prokMSA_id:027727 U84033 marine 5' prokMSA_id:005722 X89272 clone 10a. prokMSA_id:005723 X89293 clone 47a. prokMSA_id:005721 X89298 clone 8a. prokMSA_id:005699 X89309 clone 3011. prokMSA_id:005724 X89325 clone 5211. prokMSA_id:005725 X89331 clone 6511. prokMSA_id:040456 Z77561 1-140 C22 2.28.1.8.1.1.6 ENVIRONMENTAL_CLONE_SAR83 2 seqs 2.28.1.8.1.1.6.001 OTU 1 seq prokMSA_id:005726 M63810 Sargasso Sea clone SAR 83. 2.28.1.8.1.1.6.999 poor quality 1 seq prokMSA_id:065124 AY095684 alpha OR-114 2.28.1.8.1.1.7 ENVIRONMENTAL_CLONE_GAI-15 1 seq 2.28.1.8.1.1.7.999 poor quality 1 seq prokMSA_id:005727 AF010285 clone GAI-15. 2.28.1.8.1.1.8 ENVIRONMENTAL_CLONE_SAR122 1 seq 2.28.1.8.1.1.8.001 OTU 1 seq prokMSA_id:005728 L35465 clone SAR 122. 2.28.1.8.1.2 PARACOCCUS_SUBGROUP 487 seqs 2.28.1.8.1.2.1 PAR.DENITRIFICANS_SUBGROUP 121 seqs 2.28.1.8.1.2.1.001 OTU 30 seqs prokMSA_id:077660 AB098590 Paracoccus pantotrophus prokMSA_id:047659 AF229874 Paracoccus sp. 4FB8 prokMSA_id:048152 AF437875 Paracoccus versutus strain Tcn3 prokMSA_id:063012 AF526892 Paracoccus sp. WB1 prokMSA_id:005754 AJ012067 Paracoccus sp. str. B8B1. prokMSA_id:005755 AJ012068 Paracoccus sp. str. B8B2. prokMSA_id:034943 AJ288159 Paracoccus denitrificans strain DSM 2944 prokMSA_id:034219 AJ294414 Paracoccus thiophilus strain AS001 prokMSA_id:064867 AJ412687 Paracoccus sp. L prokMSA_id:028386 AY004210 Paracoccus versutus strain kps prokMSA_id:021865 AY014174 Paracoccus versutus prokMSA_id:075763 AY157621 Paracoccus denitrificans isolate NKNIS prokMSA_id:005731 D32243 Paracoccus versutus IAM 12814 . prokMSA_id:005732 D32244 Paracoccus versutus IAM 12815. prokMSA_id:005744 U58015 Paracoccus KS1. prokMSA_id:005745 U58016 Paracoccus KS2. prokMSA_id:005746 U58017 Paracoccus KL1. prokMSA_id:005735 X69159 Paracoccus denitrificans LMG 4218 . prokMSA_id:005757 Y16927 Paracoccus denitrificans ATCC 17741 . prokMSA_id:005748 Y16928 Paracoccus denitrificans LMD 22.1 . prokMSA_id:005751 Y16929 Paracoccus denitrificans DSM 413. prokMSA_id:005752 Y16930 Paracoccus denitrificans ATCC 19367. prokMSA_id:005730 Y16931 Paracoccus versutus DSM 582. prokMSA_id:005729 Y16932 Paracoccus versutus ATCC 25364 . prokMSA_id:005738 Y16933 Paracoccus pantotrophus ATCC 35512 . prokMSA_id:005741 Y16934 Paracoccus pantotrophus LMD 92.63. prokMSA_id:005747 Y16935 Paracoccus denitrificans DSM 65. prokMSA_id:019177 Y16936 Paracoccus pantotrophus strain LMG 4218 prokMSA_id:005742 Y17511 Paracoccus denitrificans JCM 6892. prokMSA_id:005743 Y17512 Paracoccus denitrificans IAM 12479 . 2.28.1.8.1.2.1.002 OTU 4 seqs prokMSA_id:005756 AB018688 Paracoccus sp. str. MBIC3966. prokMSA_id:038672 AF461158 Paracoccus zeaxanthinifaciens strain ATCC 21588 prokMSA_id:041749 AF461159 Paracoccus zeaxanthinifaciens strain R-1506 prokMSA_id:094379 AJ507806 Paracoccus sp. RA19 strain RA19 2.28.1.8.1.2.1.003 OTU 12 seqs prokMSA_id:005753 AF140003 str. ML-168a. prokMSA_id:063848 AF454287 alpha clone ML316M-13 prokMSA_id:063847 AF454288 alpha clone ML320J-33 prokMSA_id:063844 AF454292 alpha clone ML602M-13 prokMSA_id:063841 AF454295 alpha clone ML812M-6 prokMSA_id:062730 AF507829 alpha clone ML602J-43 prokMSA_id:062723 AF507832 alpha clone ML617.5J-38 prokMSA_id:062721 AF507833 alpha clone ML623J-42 prokMSA_id:062720 AF507834 alpha clone ML623J-32 prokMSA_id:062719 AF507835 alpha clone ML623J-49 prokMSA_id:062715 AF507837 alpha clone ML623J-48 prokMSA_id:073883 AJ132383 Natronohydrobacter thiooxidans strain AHO 1 2.28.1.8.1.2.1.004 OTU 2 seqs prokMSA_id:005750 AF159654 clone HstpL2. prokMSA_id:080628 AY193281 clone BTM81 2.28.1.8.1.2.1.005 OTU 1 seq prokMSA_id:005749 AF159651 clone HstpL100. 2.28.1.8.1.2.1.006 OTU 1 seq prokMSA_id:005740 AB024613 Paracoccus MBIC1145 str. MBIC1145. 2.28.1.8.1.2.1.007 OTU 1 seq prokMSA_id:005739 AB008115 str. MBIC3024. 2.28.1.8.1.2.1.008 OTU 1 seq prokMSA_id:005737 AF030437 Methyloarcula terricola str. h37 VKM B-2160. 2.28.1.8.1.2.1.009 OTU 1 seq prokMSA_id:005736 AF142896 clone EKHO-13. 2.28.1.8.1.2.1.010 OTU 6 seqs prokMSA_id:023110 AY014168 Paracoccus yeeii strain G4878 prokMSA_id:028217 AY014169 Paracoccus yeeii strain G6446 prokMSA_id:044012 AY014170 Paracoccus yeeii strain G6155 prokMSA_id:052386 AY014171 Paracoccus yeeii strain G1968 prokMSA_id:026594 AY014172 Paracoccus yeeii strain G9205 prokMSA_id:022206 AY014173 Paracoccus yeeii strain G1212 2.28.1.8.1.2.1.011 OTU 3 seqs prokMSA_id:048787 AF248638 Rhodobaca bogoriensis prokMSA_id:023935 AF384204 Rhodobaca bogoriensis strain CL1 prokMSA_id:052058 AF384205 Rhodobaca bogoriensis strain LBB2 2.28.1.8.1.2.1.012 OTU 1 seq prokMSA_id:031561 AB074719 Alpha S-N0-14A 2.28.1.8.1.2.1.013 OTU 1 seq prokMSA_id:062508 AF513929 Rhodobacter group clone LA1-B42N 2.28.1.8.1.2.1.014 OTU 1 seq prokMSA_id:066538 AY100543 clone cvf74065 2.28.1.8.1.2.1.015 OTU 1 seq prokMSA_id:073174 AY145552 Alpha AP-15 2.28.1.8.1.2.1.016 OTU 1 seq prokMSA_id:075098 AY164415 alpha clone DLIB-65 2.28.1.8.1.2.1.017 OTU 1 seq prokMSA_id:076860 AY159141 MF_clone_54 2.28.1.8.1.2.1.018 OTU 1 seq prokMSA_id:077003 AY159138 MF_clone_38 2.28.1.8.1.2.1.019 OTU 1 seq prokMSA_id:078216 AB098589 Paracoccus sp. TUT1021 2.28.1.8.1.2.1.020 OTU 1 seq prokMSA_id:086027 AY256516 Paracoccus aminovorans isolate dPAO9 2.28.1.8.1.2.1.021 OTU 1 seq prokMSA_id:088947 AY312056 Paracoccus sp. Ol18 plasmid pOL18 rrn operon complete 2.28.1.8.1.2.1.022 OTU 1 seq prokMSA_id:092016 AY344379 clone K2-S-3 2.28.1.8.1.2.1.999 poor quality 48 seqs prokMSA_id:027347 AF177559 marine D021 prokMSA_id:071695 AF249749 Roseinatronobacter thiooxidans prokMSA_id:072124 AF250332 Paracoccus kondratievae prokMSA_id:071366 AF250334 Paracoccus methylutens prokMSA_id:075764 AF344292 alpha DGGE band GL6.2 prokMSA_id:068275 AF365441 clone BM89MF1BA2 prokMSA_id:068267 AF365447 clone BM89MF1BB1 prokMSA_id:068266 AF365448 clone BM89MF1BB10 prokMSA_id:041013 AF414881 Alpha P669 prokMSA_id:030342 AF414882 Alpha P708 prokMSA_id:047526 AF419197 antarctic soil clone bh5.33 prokMSA_id:035756 AF419202 antarctic soil clone bh5.52 prokMSA_id:050972 AF428829 clone CR98-24-23 prokMSA_id:045360 AF432297 alpha 0%N-0d-3 prokMSA_id:055988 AF454284 alpha clone ML1218M-1 prokMSA_id:063843 AF454285 alpha clone ML310M-3 prokMSA_id:063842 AF454286 alpha clone ML310M-4 prokMSA_id:063840 AF454289 alpha clone ML512M-12 prokMSA_id:063839 AF454290 alpha clone ML513M-10 prokMSA_id:063838 AF454291 alpha clone ML516J-6 prokMSA_id:063837 AF454293 alpha clone ML602M-2 prokMSA_id:063835 AF454294 alpha clone ML812M-5 prokMSA_id:063833 AF454296 alpha clone ML817J-14 prokMSA_id:063830 AF454297 alpha clone ML817J-15 prokMSA_id:028447 AF473967 alpha 34-34 prokMSA_id:064141 AF477875 clone 4-UMH 22% pond prokMSA_id:064126 AF477899 'A72-UMH 8% pond' prokMSA_id:062724 AF507830 alpha clone ML602J-1 prokMSA_id:062722 AF507831 alpha clone ML602J-50 prokMSA_id:063686 AF522921 clone 1g8 prokMSA_id:063681 AF522925 clone 5g11 prokMSA_id:058836 AF534231 alpha clone alpha ca2 prokMSA_id:060691 AF534574 Paracoccus denitrificans prokMSA_id:069726 AF544935 alpha clone 1-7-10 prokMSA_id:069490 AF544949 alpha clone 3-7-2 prokMSA_id:074472 AF544952 alpha clone 5-7-3 prokMSA_id:071483 AF544961 alpha clone 6-7-1 prokMSA_id:070660 AH001787 Thiobacillus versutus prokMSA_id:027359 AJ298358 marine alpha N-62 prokMSA_id:057416 AJ517854 clone mCMC35.1 prokMSA_id:057343 AY149623 Marine SIMO IS-S76-281 prokMSA_id:085286 AY241444 Alpha UST020129-035 prokMSA_id:090610 AY325768 Paracoccus sp. Ophe1 isolate 352 prokMSA_id:089581 AY325770 Paracoccus sp. Ophe1 isolate 1018 prokMSA_id:005734 D13480 Paracoccus denitrificans IAM 12479 . prokMSA_id:005733 M79427 Paracoccus versutus ATCC 25364 . prokMSA_id:073706 M79428 Thiobacillus versutus prokMSA_id:034013 Y13420 strain mr14F 2.28.1.8.1.2.2 PAR.AMINOPHILUS_SUBGROUP 95 seqs 2.28.1.8.1.2.2.006 OTU 2 seqs prokMSA_id:038102 AY014177 Paracoccus alcaliphilus prokMSA_id:005766 D32238 Paracoccus alcaliphilus str. TK 1015 JCM 7364 . 2.28.1.8.1.2.2.007 OTU 4 seqs prokMSA_id:005765 AB012914 Paracoccus sp. str. MBIC3345 Y4. prokMSA_id:061950 AJ244715 Paracoccus-like sp. V4.BP.10 marine isolate prokMSA_id:077519 AY167832 Paracoccus sp. SAFR-029 prokMSA_id:088042 AY278919 Paracoccus sp. T6-10 2.28.1.8.1.2.2.008 OTU 1 seq prokMSA_id:005762 AF030436 Methyloarcula marina str. h1 VKM B-2159. 2.28.1.8.1.2.2.010 OTU 1 seq prokMSA_id:005760 D32242 Paracoccus thiocyanatus str. THI 011; 1-8A IAM 12816 . 2.28.1.8.1.2.2.012 OTU 1 seq prokMSA_id:023196 AF259625 Rhodobacter group CtaxPhil-24 2.28.1.8.1.2.2.014 OTU 5 seqs prokMSA_id:024018 AF376134 Paracoccus sp. T231 prokMSA_id:026524 AJ294415 Paracoccus alcaliphilus strain KTC002 prokMSA_id:061252 AJ505785 Paracoccus aminovorans isolate GP43 prokMSA_id:091597 AY337355 Paracoccus sp. 2-2 prokMSA_id:005761 D32240 Paracoccus aminovorans str. DM-82 JCM 7685 . 2.28.1.8.1.2.2.015 OTU 2 seqs prokMSA_id:027188 AB041770 Paracoccus kawasakiensis prokMSA_id:091675 AB101543 Catellatibacterium nectariphilum 2.28.1.8.1.2.2.016 OTU 2 seqs prokMSA_id:046715 AF194399 Paracoccus marcusii prokMSA_id:032853 AJ428275 Paracoccus seriniphila strain MBT-A4 2.28.1.8.1.2.2.017 OTU 21 seqs prokMSA_id:005768 AB006899 Paracoccus carotinifaciens str. E-396. prokMSA_id:005772 AB008114 str. MBIC1143. prokMSA_id:005769 AB025188 Paracoccus MBIC4017 str. MBIC4017. prokMSA_id:005770 AB025189 Paracoccus MBIC4018 str. MBIC4018. prokMSA_id:005763 AB025190 Paracoccus MBIC4019 str. MBIC4019. prokMSA_id:005764 AB025192 Paracoccus MBIC4036 str. MBIC4036. prokMSA_id:005771 AF139992 Paracoccus marcusii str. ML-003. prokMSA_id:061839 AF529328 alpha clone CLi24 prokMSA_id:032262 AJ299231 Paracoccus marcusii strain 2.21 prokMSA_id:070656 AJ391198 Paracoccus sp. AS-37 prokMSA_id:076690 AJ532681 alpha clone Gitt-KF-3 prokMSA_id:093958 AJ582185 alpha- clone Gitt-GS-149 prokMSA_id:024498 AY014176 Paracoccus aminophilus prokMSA_id:033902 AY014178 Paracoccus yeeii strain H13 prokMSA_id:046743 AY014179 Paracoccus yeeii strain G3060 prokMSA_id:079025 AY159800 Paracoccus marcusii prokMSA_id:081686 AY192069 alpha clone P14-GM4R-t prokMSA_id:005758 D32239 Paracoccus aminophilus str. DM-15 JCM 7686 . prokMSA_id:043378 E14335 encoding of E-396 strain prokMSA_id:005767 Y12703 Paracoccus marcusii. prokMSA_id:031698 Y15324 Paracoccus sp. isolate PRLIST3 2.28.1.8.1.2.2.018 OTU 1 seq prokMSA_id:044392 AJ315682 Alpha ML6 strain ML6 2.28.1.8.1.2.2.019 OTU 1 seq prokMSA_id:062504 AF513933 Rhodobacter group clone LA7-B19N 2.28.1.8.1.2.2.020 OTU 1 seq prokMSA_id:064243 AF515634 Rhodobacter group clone LA4-B4 2.28.1.8.1.2.2.021 OTU 1 seq prokMSA_id:073084 AB061273 Roseibacterium elongatum 2.28.1.8.1.2.2.022 OTU 2 seqs prokMSA_id:080137 AF468351 Arctic sea ice associated ARK10006 prokMSA_id:074886 AJ534231 Methylarcula sp. HEL-8 isolate HEL-8 2.28.1.8.1.2.2.023 OTU 1 seq prokMSA_id:079682 AB094850 clone:OHKB4.50 2.28.1.8.1.2.2.024 OTU 1 seq prokMSA_id:079938 AY193223 clone BMS32 2.28.1.8.1.2.2.025 OTU 1 seq prokMSA_id:080719 AB094858 clone:OHKB4.82 2.28.1.8.1.2.2.026 OTU 1 seq prokMSA_id:081402 AY218591 clone KD2-75 2.28.1.8.1.2.2.027 OTU 1 seq prokMSA_id:081445 AY080991 Paracoccus sp. clone ckl29 2.28.1.8.1.2.2.028 OTU 1 seq prokMSA_id:088189 AY327150 clone ZB56 2.28.1.8.1.2.2.029 OTU 1 seq prokMSA_id:098019 AY378237 Glacial ice MS-T2-02 2.28.1.8.1.2.2.030 OTU 1 seq prokMSA_id:098688 AY378204 Extreme arid zone HX-IIF01 2.28.1.8.1.2.2.999 poor quality 42 seqs prokMSA_id:035619 AB054951 Paracoccus sp. 1165b prokMSA_id:005775 AF007252 clone GAC-5. prokMSA_id:005774 AF007259 clone GAI-36. prokMSA_id:022441 AF254098 Alpha IC4 prokMSA_id:016739 AF254099 Alpha S25com04 prokMSA_id:019522 AF268844 glc1 prokMSA_id:045487 AF268851 glc8 prokMSA_id:046272 AF287022 alpha EC-I1 prokMSA_id:031568 AF296133 DMSP-degrading marine JA6 prokMSA_id:021937 AF298838 Paracoccus sp. DY16 prokMSA_id:070850 AF298839 Paracoccus sp. DY17 prokMSA_id:075969 AF344294 alpha DGGE band GL2.5 prokMSA_id:050341 AF358009 clone LO13.17 prokMSA_id:039992 AF427621 Marine SIMO IS-S36-116 prokMSA_id:051578 AF429068 clone CR99-7-34 prokMSA_id:037404 AF460880 Marine SIMO-IS116 prokMSA_id:038770 AF460890 Marine SIMO-IS125 prokMSA_id:031801 AF469356 alpha CTD14B prokMSA_id:063683 AF522922 clone 1g9 prokMSA_id:063672 AF522934 clone 8g13 prokMSA_id:069737 AF544920 alpha clone 2-6-8 prokMSA_id:058068 AF547401 alpha clone CL-S77-288 prokMSA_id:058054 AF547416 alpha clone CL-S77-303 prokMSA_id:038743 AJ309981 Paracoccus sp. dtb77 prokMSA_id:021826 AJ419053 clone kl109 prokMSA_id:082536 AJ495660 alpha isolate SB-14 prokMSA_id:082898 AJ495678 alpha isolate SB-32 prokMSA_id:062560 AJ504562 isolate P2CN13 prokMSA_id:018916 AY038708 clone TAF-A22 prokMSA_id:063179 AY117769 alpha isolate DGGE band A-14 prokMSA_id:059182 AY136089 Paracoccus sp. KIN136 prokMSA_id:086293 AY263721 alpha clone FBR7 prokMSA_id:083713 AY263728 alpha clone FBR14 prokMSA_id:087873 AY278894 Paracoccus sp. T2-28 prokMSA_id:086999 AY278914 Paracoccus sp. T5-20 prokMSA_id:090461 AY317122 Alpha SKA55 prokMSA_id:091259 AY337356 Paracoccus sp. 5-1 prokMSA_id:018482 U70685 alpha OM143 prokMSA_id:025711 U70690 alpha OM47 prokMSA_id:045465 U78943 alpha prokMSA_id:005773 X78652 clone SMK735. prokMSA_id:005759 X91520 clone K5. 2.28.1.8.1.2.3 PAR.ALKENIFER_SUBGROUP 7 seqs 2.28.1.8.1.2.3.001 OTU 1 seq prokMSA_id:005779 D32241 Paracoccus kocurii str. B JCM 7684 . 2.28.1.8.1.2.3.002 OTU 4 seqs prokMSA_id:047316 AY014175 Paracoccus solventivorans prokMSA_id:005776 Y07705 Paracoccus solventivorans str. L1 DSM 6637 . prokMSA_id:005777 Y13826 Paracoccus solventivorans str. A686/1. prokMSA_id:005778 Y13827 Paracoccus alkenifer str. A901/1 DSM 11593 . 2.28.1.8.1.2.3.003 OTU 1 seq prokMSA_id:066529 AY100552 clone cvf74077 2.28.1.8.1.2.3.999 poor quality 1 seq prokMSA_id:085295 AY263720 alpha clone FBR6 2.28.1.8.1.2.4 RB.VELDKAMPII_SUBGROUP 27 seqs 2.28.1.8.1.2.4.001 OTU 1 seq prokMSA_id:005781 AF170736 Rhodobacter QSSC1-20 str. QSSC1-20. 2.28.1.8.1.2.4.002 OTU 6 seqs prokMSA_id:081722 AJ548896 Rhodobacter sp. clone BIOEST-7 prokMSA_id:081669 AJ548903 Rhodobacter sp. clone BIOEST-14 prokMSA_id:081655 AJ548908 Rhodobacter sp. clone BIOEST-19 prokMSA_id:081168 AJ548912 Rhodobacter sp. clone BIOEST-23 prokMSA_id:081429 AJ548915 Rhodobacter sp. clone BIOEST-26 prokMSA_id:005780 D16421 Rhodobacter veldkampii ATCC 35703 . 2.28.1.8.1.2.4.003 OTU 1 seq prokMSA_id:056159 AB079681 Rhodobacter sp. AP-10 2.28.1.8.1.2.4.004 OTU 4 seqs prokMSA_id:026466 AF359525 Marine ATAM407_61 prokMSA_id:033223 AJ294351 Roseobacter 253-13 isolate 253-13 prokMSA_id:075287 AJ534215 Roseovarius sp. DFL-24 isolate DFL-24 prokMSA_id:076051 AJ534219 Roseovarius sp. DFL-35 isolate DFL-35 2.28.1.8.1.2.4.005 OTU 3 seqs prokMSA_id:038545 Z88567 isolate HNS27# HpaNS1-3 prokMSA_id:073475 Z88569 isolate HNSM50 prokMSA_id:047941 Z88578 isolate HOS35# HpaBS 2.28.1.8.1.2.4.006 OTU 1 seq prokMSA_id:064414 AY102910 clone BCM3S-3B 2.28.1.8.1.2.4.007 OTU 1 seq prokMSA_id:064420 AY102903 clone BCM3S-13B 2.28.1.8.1.2.4.999 poor quality 10 seqs prokMSA_id:074709 AF078274 Grassland soil clone saf3_003 prokMSA_id:045133 AF141556 alpha clone CRE-PA89 prokMSA_id:068314 AF361648 clone MN16BT2-6 prokMSA_id:046985 AF428826 clone CR98-24-20 prokMSA_id:023247 AF428836 clone CR98-24-30 prokMSA_id:081338 AJ548904 Rhodobacter sp. clone BIOEST-15 prokMSA_id:057339 AY149625 Marine SIMO IS-S76-283 prokMSA_id:056823 AY149762 alpha SIMO CL-S30-92 prokMSA_id:056807 AY149784 alpha SIMO CL-S29-21 prokMSA_id:005782 D13477 Rhodobacter veldkampii ATCC 35703 . 2.28.1.8.1.2.5 STR.SW2_SUBGROUP 39 seqs 2.28.1.8.1.2.5.001 OTU 1 seq prokMSA_id:005785 AJ001425 str. from 400 mbsl of lake Baikal RUSSIA. 2.28.1.8.1.2.5.002 OTU 1 seq prokMSA_id:005784 AJ224988 str. from Lake Gossenkoellesee. 2.28.1.8.1.2.5.003 OTU 1 seq prokMSA_id:005783 X78717 str. SW2. 2.28.1.8.1.2.5.004 OTU 1 seq prokMSA_id:059349 AF502217 clone HP1B64 2.28.1.8.1.2.5.005 OTU 2 seqs prokMSA_id:066953 AJ440751 Gram-negative MM 1 isolate MM 1 prokMSA_id:028799 Z96941 strain MR8C 2.28.1.8.1.2.5.006 OTU 1 seq prokMSA_id:034269 AF323268 Gram negative W6P-1 2.28.1.8.1.2.5.007 OTU 1 seq prokMSA_id:038152 AF323259 Gram negative B3P-2 2.28.1.8.1.2.5.008 OTU 1 seq prokMSA_id:039288 AF323254 Gram negative B1G-1A 2.28.1.8.1.2.5.009 OTU 2 seqs prokMSA_id:083072 AY247162 AgL1 prokMSA_id:084365 AY247163 AgL2 2.28.1.8.1.2.5.010 OTU 1 seq prokMSA_id:084743 AY247161 AgA2 2.28.1.8.1.2.5.011 OTU 1 seq prokMSA_id:084896 AY247165 AgL4 2.28.1.8.1.2.5.012 OTU 1 seq prokMSA_id:086103 AY247164 AgL3 2.28.1.8.1.2.5.999 poor quality 25 seqs prokMSA_id:091223 AB101545 Rhodobacteraceae GF2 prokMSA_id:091231 AB101546 Rhodobacteraceae GF3 prokMSA_id:091238 AB101548 Rhodobacteraceae GF5 prokMSA_id:091440 AB101553 Rhodobacteraceae GF10 prokMSA_id:091868 AB101555 Rhodobacteraceae GF12 prokMSA_id:091784 AB101557 Rhodobacteraceae GF14 prokMSA_id:091883 AB101558 Rhodobacteraceae GF15 prokMSA_id:091375 AB101559 Rhodobacteraceae GF16 prokMSA_id:091409 AB101560 Rhodobacteraceae GF17 prokMSA_id:091941 AB101562 Rhodobacteraceae GF19 prokMSA_id:091620 AB101572 Rhodobacteraceae GF29 prokMSA_id:091334 AB101573 Rhodobacteraceae GF30 prokMSA_id:041922 AF428596 clone CRD99-18 prokMSA_id:029427 AF428628 clone CRD99-50 prokMSA_id:026781 AF428950 clone CR98-35-68 prokMSA_id:017900 AF429022 clone CR99-35-64 prokMSA_id:046589 AF429035 clone CR99-7-01 prokMSA_id:020235 AF429194 clone CR99-2-08 prokMSA_id:017662 AF429223 clone CR99-2-37 prokMSA_id:066436 AF497879 alpha isolate WL5-5 prokMSA_id:059991 AJ507499 clone VE22-98 prokMSA_id:055349 AJ507503 clone VE32-98 prokMSA_id:081954 AY192061 alpha clone P49-GM4R-t prokMSA_id:005786 X84583 str. SBR2045. prokMSA_id:005787 X84602 str. SBR2070. 2.28.1.8.1.2.6 RB.SPHAEROIDES_SUBGROUP 68 seqs 2.28.1.8.1.2.6.001 OTU 10 seqs prokMSA_id:067718 AB082379 Rhodobacter sp. NMR15 prokMSA_id:022866 AF468821 Rhodobacter sphaeroides KCTC 12085 prokMSA_id:056072 AF515782 Rhodobacter sp. PS9 prokMSA_id:005797 D16424 Rhodobacter sphaeroides str. IL106. prokMSA_id:005795 D16425 Rhodobacter sphaeroides IFO 12203. prokMSA_id:005788 D70846 Rhodobacter azotoformans str. KA25. prokMSA_id:005790 D70847 Rhodobacter azotoformans str. SA16. prokMSA_id:005791 X53853 Rhodobacter sphaeroides str. ATH 2.4.1 ATCC 17023 =. prokMSA_id:005798 X53854 Rhodobacter sphaeroides str. ATH 2.4.1 ATCC 17023 =rrnB. prokMSA_id:005796 X53855 Rhodobacter sphaeroides str. ATH 2.4.1 ATCC 17023 =rrnC. 2.28.1.8.1.2.6.002 OTU 1 seq prokMSA_id:005792 D85834 Rubrimonas cliftonensis str. OCh317. 2.28.1.8.1.2.6.003 OTU 1 seq prokMSA_id:005793 AF035433 Rhodobacter apigmentum. 2.28.1.8.1.2.6.004 OTU 1 seq prokMSA_id:017544 AJ415571 Rhodobacter sphaeroides strain 0103 856 2.28.1.8.1.2.6.005 OTU 1 seq prokMSA_id:019381 AF097818 clone 49523 2.28.1.8.1.2.6.006 OTU 1 seq prokMSA_id:021183 D86605 Rhodobacter sp. complete 2.28.1.8.1.2.6.007 OTU 1 seq prokMSA_id:021491 AF445668 alpha clone SM1C11 2.28.1.8.1.2.6.008 OTU 1 seq prokMSA_id:023200 AF234761 sludge A41 2.28.1.8.1.2.6.009 OTU 1 seq prokMSA_id:028407 AF296197 SY6-29 2.28.1.8.1.2.6.010 OTU 1 seq prokMSA_id:070088 AF034935 Alpha 'ANG clone 1b' 2.28.1.8.1.2.6.011 OTU 1 seq prokMSA_id:033547 AF194397 Roseobacter kpc34 2.28.1.8.1.2.6.012 OTU 1 seq prokMSA_id:058503 AB072721 clone:pHAuB-N 2.28.1.8.1.2.6.013 OTU 1 seq prokMSA_id:046644 AJ296550 GR-WP33-45 clone GR-WP33-45 2.28.1.8.1.2.6.014 OTU 1 seq prokMSA_id:048409 AJ296551 GR-Sh1-107 clone GR-Sh1-107 2.28.1.8.1.2.6.015 OTU 1 seq prokMSA_id:049413 AF234740 sludge A15b 2.28.1.8.1.2.6.016 OTU 1 seq prokMSA_id:072496 AY038707 clone TAF-A171 2.28.1.8.1.2.6.017 OTU 2 seqs prokMSA_id:073980 AY145556 Alpha AP-19 prokMSA_id:081685 AY216456 clone KM72 2.28.1.8.1.2.6.018 OTU 1 seq prokMSA_id:076833 AY159129 MF_clone_11 2.28.1.8.1.2.6.019 OTU 1 seq prokMSA_id:078048 AJ514440 clone AS1o1 2.28.1.8.1.2.6.020 OTU 1 seq prokMSA_id:078305 AJ514433 clone ASG5 2.28.1.8.1.2.6.021 OTU 1 seq prokMSA_id:079922 AB094838 clone:OHKB4.20 2.28.1.8.1.2.6.022 OTU 1 seq prokMSA_id:080728 AF468358 Arctic sea ice ARK10036 2.28.1.8.1.2.6.023 OTU 2 seqs prokMSA_id:081285 AJ548913 Rhodobacter sp. clone BIOEST-24 prokMSA_id:081296 AJ548916 Rhodobacter sp. clone BIOEST-27 2.28.1.8.1.2.6.024 OTU 1 seq prokMSA_id:084970 AY254687 alpha SBR6alpha5 2.28.1.8.1.2.6.025 OTU 1 seq prokMSA_id:097361 AY375078 clone B61 2.28.1.8.1.2.6.999 poor quality 32 seqs prokMSA_id:079647 AB089944 clone:HN10 prokMSA_id:074369 AF034934 Alpha 'ANG clone 4b' prokMSA_id:036335 AF078265 Grassland soil clone saf2_417 prokMSA_id:029394 AF141434 alpha clone CR-PA55 prokMSA_id:021365 AF296193 SY6-18 prokMSA_id:044692 AF296214 SY6-88 prokMSA_id:024508 AF316782 Crater Lake CL0-56 prokMSA_id:051385 AF316783 Crater Lake CL0-89 prokMSA_id:027649 AF428832 clone CR98-24-26 prokMSA_id:041615 AF428835 clone CR98-24-29 prokMSA_id:041731 AF446309 alpha FL14F08 prokMSA_id:067309 AF494499 Paracoccus sp. clone GOBB3-B07-1-5 prokMSA_id:067306 AF494503 Sphingomonadaceae clone GOBB3-B04-14-6 prokMSA_id:066434 AF497881 alpha isolate WL5-16 prokMSA_id:045831 AJ391172 marine alpha AS-8 prokMSA_id:074863 AJ404646 Rhodobacter group 131-1-2 prokMSA_id:062608 AJ504513 isolate P1CN52 prokMSA_id:073962 AJ504552 isolate P2CN01 prokMSA_id:072847 AY038709 clone TAF-B4 prokMSA_id:070393 AY145579 alpha clone DC5-0-6 prokMSA_id:096855 AY147377 alpha Wu31 prokMSA_id:083164 AY261825 clone OTU ADB-3 prokMSA_id:087230 AY293541 alpha clone FL14C06 prokMSA_id:087603 AY293544 alpha clone FL14D05 prokMSA_id:087412 AY293556 alpha clone FL14G03 prokMSA_id:005789 D88522 Agrobacterium ferrugineum IAM 12616. prokMSA_id:020873 U63934 Rhodobacter sp. prokMSA_id:074644 U63949 Rhodobacter sp. prokMSA_id:049037 U78913 alpha prokMSA_id:040440 U78918 alpha prokMSA_id:005794 X78637 clone SMK1973. prokMSA_id:005799 X78644 clone SMK2352. 2.28.1.8.1.2.7 AMR.MACAUENSIS_SUBGROUP 80 seqs 2.28.1.8.1.2.7.001 OTU 1 seq prokMSA_id:005812 U88043 Amaricoccus veronensis str. Ben102 ACM 5098 . 2.28.1.8.1.2.7.002 OTU 1 seq prokMSA_id:005811 U88042 Amaricoccus macauensis str. Ben104 ACM 5096 . 2.28.1.8.1.2.7.003 OTU 4 seqs prokMSA_id:005809 AB013259 str. NKB7. prokMSA_id:042942 AB077340 alpha clone:TYM--3 prokMSA_id:016977 AF424267 alpha MERTZ_2CM_12 prokMSA_id:005810 AJ240997 clone Sva0758. 2.28.1.8.1.2.7.004 OTU 1 seq prokMSA_id:005808 U88044 Amaricoccus tamworthensis str. Ben103 ACM 5097 . 2.28.1.8.1.2.7.005 OTU 1 seq prokMSA_id:005807 AB015247 str. JTB359. 2.28.1.8.1.2.7.006 OTU 3 seqs prokMSA_id:005804 U88041 Amaricoccus kaplicensis str. Ben101 ACM 5099 . prokMSA_id:005805 Y09609 Tetracoccus cechii str. Italian. prokMSA_id:005806 Y09610 Tetracoccus cechii str. Czech. 2.28.1.8.1.2.7.007 OTU 1 seq prokMSA_id:005803 D13478 Rhodobacter blasticus NCIMB 11576 . 2.28.1.8.1.2.7.008 OTU 2 seqs prokMSA_id:005802 AB017799 Rhodobacter TCRI 14 str. TCRI 14. prokMSA_id:005800 D16429 Rhodobacter blasticus ATCC 33485 . 2.28.1.8.1.2.7.009 OTU 1 seq prokMSA_id:005801 AF159655 clone HstpL51. 2.28.1.8.1.2.7.010 OTU 2 seqs prokMSA_id:018204 AF234758 sludge A10 prokMSA_id:049391 AF280854 mle1-20 2.28.1.8.1.2.7.011 OTU 1 seq prokMSA_id:033982 AF424282 alpha MERTZ_0CM_210 2.28.1.8.1.2.7.012 OTU 1 seq prokMSA_id:035061 AF108135 'halibut' 2.28.1.8.1.2.7.013 OTU 2 seqs prokMSA_id:035565 AF234745 sludge A26 prokMSA_id:075649 AY168723 clone HC-25BP 2.28.1.8.1.2.7.014 OTU 1 seq prokMSA_id:058379 AF368183 Rhodobacter group clone SBRT155 2.28.1.8.1.2.7.015 OTU 1 seq prokMSA_id:039758 AF142954 TAYNAYA-8 2.28.1.8.1.2.7.016 OTU 1 seq prokMSA_id:052539 AF424268 alpha MERTZ_2CM_16 2.28.1.8.1.2.7.017 OTU 1 seq prokMSA_id:054358 AF424286 alpha MERTZ_0CM_310 2.28.1.8.1.2.7.018 OTU 1 seq prokMSA_id:066486 AY100607 clone cvf65150 2.28.1.8.1.2.7.019 OTU 1 seq prokMSA_id:066503 AY100584 clone cvf74058 2.28.1.8.1.2.7.020 OTU 1 seq prokMSA_id:067721 AB077986 Rhodobacter gluconicum 2.28.1.8.1.2.7.021 OTU 1 seq prokMSA_id:075265 AY154632 earthworm cast clone c286 2.28.1.8.1.2.7.022 OTU 1 seq prokMSA_id:077142 AY164339 alpha clone ALIB-14 2.28.1.8.1.2.7.023 OTU 2 seqs prokMSA_id:077913 AJ489269 alpha isolate Osrt prokMSA_id:078270 AJ505840 Alpha A-col-R2A-4 isolate A-col-R2A-4 2.28.1.8.1.2.7.024 OTU 1 seq prokMSA_id:079200 AB099987 sequences clone: IheB3-27 2.28.1.8.1.2.7.025 OTU 1 seq prokMSA_id:080374 AB094855 clone:OHKB4.60 2.28.1.8.1.2.7.026 OTU 1 seq prokMSA_id:083623 AY226210 alpha clone ABBB-43 2.28.1.8.1.2.7.027 OTU 1 seq prokMSA_id:086041 AY250888 alpha clone FBP492 2.28.1.8.1.2.7.028 OTU 1 seq prokMSA_id:087826 AY268237 clone E6 small subunit 2.28.1.8.1.2.7.029 OTU 1 seq prokMSA_id:090774 AJ567557 alpha clone MBMPE43 2.28.1.8.1.2.7.030 OTU 1 seq prokMSA_id:092736 AY354143 clone pIR3BC12 2.28.1.8.1.2.7.031 OTU 1 seq prokMSA_id:095482 AY225602 alpha clone AT-s63 2.28.1.8.1.2.7.032 OTU 1 seq prokMSA_id:096829 Y14150 Rhodobacter veldkampii isolate ISR010 2.28.1.8.1.2.7.033 OTU 1 seq prokMSA_id:098295 AB122032 Rhodobacter sp. Jip03 2.28.1.8.1.2.7.999 poor quality 38 seqs prokMSA_id:079156 AB099994 sequences clone: IndB1-2 prokMSA_id:026053 AF078308 Grassland soil clone saf3_120 prokMSA_id:052820 AF078313 Grassland soil clone saf3_221 prokMSA_id:038041 AF126152 Thiothrix eikelboomii isolate Ben47 prokMSA_id:051506 AF289903 alpha Kmlps6-5 prokMSA_id:040942 AF321073 clone A4 prokMSA_id:045482 AF332244 clone T12-1 prokMSA_id:068236 AF365485 clone BM89MF1BH5 prokMSA_id:067922 AF365852 clone BT60PA10BF6 prokMSA_id:025554 AF428587 clone CRD99-09 prokMSA_id:020053 AF429191 clone CR99-2-05 prokMSA_id:048569 AF429197 clone CR99-2-11 prokMSA_id:017565 AF432287 alpha FO-26d-41 prokMSA_id:045066 AF432328 alpha 4%N-0d-46 prokMSA_id:051184 AF447181 antarctic soil clone bh5.50 prokMSA_id:068495 AF486794 clone E5-46-HS3P-318 prokMSA_id:069435 AF544902 alpha clone A191-13 prokMSA_id:055939 AF544925 alpha clone 3-6-6 prokMSA_id:070453 AJ303341 SCBP-F1 prokMSA_id:059238 AJ319845 SB-62-AG prokMSA_id:047345 AJ416667 alpha clone env.S069 prokMSA_id:062633 AJ504474 isolate P1CN01 prokMSA_id:070146 AJ504484 isolate P1CN13 prokMSA_id:062605 AJ504515 isolate P1CN54 prokMSA_id:057409 AJ517866 clone B12.3 prokMSA_id:056986 AJ518586 clone Qui4P2-47 prokMSA_id:086394 AY092350 clone BI45 prokMSA_id:084986 AY092351 clone BI15 prokMSA_id:070212 AY144202 alpha clone LTUA04114 prokMSA_id:073350 AY144203 alpha clone LTUA05256 prokMSA_id:082462 AY192058 beta clone P54-GM4R-t prokMSA_id:080742 AY192996 clone BMSB7 prokMSA_id:079744 AY193030 clone BMSA1 prokMSA_id:083372 AY226269 alpha clone BBBB-83 prokMSA_id:087616 AY268233 clone F4 small subunit prokMSA_id:088542 AY323134 alpha clone A115-9 prokMSA_id:092183 AY354186 clone pIR3BA09 prokMSA_id:094892 AY369147 clone F-OTU7 2.28.1.8.1.2.8 RB.CAPSULATUS_SUBGROUP 49 seqs 2.28.1.8.1.2.8.001 OTU 7 seqs prokMSA_id:005816 AB017796 Rhodobacter TCRI 3 str. TCRI 3. prokMSA_id:005817 AB017797 Rhodobacter TCRI 5 str. TCRI 5. prokMSA_id:005818 AB017798 Rhodobacter TCRI str. TCRI 2. prokMSA_id:082142 AJ548905 Rhodobacter sp. clone BIOEST-16 prokMSA_id:060758 AY128090 Rhodobacter sp. clone PSB-M-1 prokMSA_id:005815 D16427 Rhodobacter capsulatus str. C5. prokMSA_id:005820 D16428 Rhodobacter capsulatus str. ATH 2.3.1 ATCC 11166 . 2.28.1.8.1.2.8.002 OTU 1 seq prokMSA_id:005814 M60671 Rhodobacter capsulatus str. B10 ATCC 33303. 2.28.1.8.1.2.8.003 OTU 4 seqs prokMSA_id:034114 AF234715 sludge H42 prokMSA_id:040921 AF234725 sludge S2 prokMSA_id:017078 AF234729 sludge A27 prokMSA_id:022427 AF234741 sludge A6 2.28.1.8.1.2.8.004 OTU 2 seqs prokMSA_id:018225 AB074724 Alpha S-N0-25B prokMSA_id:071562 AY145582 alpha clone DC5-50-1 2.28.1.8.1.2.8.005 OTU 2 seqs prokMSA_id:059351 AF502214 clone HP1A30 prokMSA_id:059350 AF502215 clone HP1B71 2.28.1.8.1.2.8.006 OTU 1 seq prokMSA_id:059348 AF502216 clone HP1B39 2.28.1.8.1.2.8.007 OTU 2 seqs prokMSA_id:062868 AF452106 Cf. Rhodobacter sp. Framboise prokMSA_id:083643 AY244771 Rhodobacter sp. 2002-65602 2.28.1.8.1.2.8.008 OTU 1 seq prokMSA_id:064432 AY102890 clone BCM1-8B 2.28.1.8.1.2.8.009 OTU 1 seq prokMSA_id:066834 AF368182 Acidobacterium group clone SBRA145 2.28.1.8.1.2.8.010 OTU 1 seq prokMSA_id:073065 AY038706 clone TAF-A21 2.28.1.8.1.2.8.011 OTU 1 seq prokMSA_id:077954 AY172658 Rhodobacter sp. B-7005 2.28.1.8.1.2.8.012 OTU 2 seqs prokMSA_id:094471 AY373325 clone Dpcom131 prokMSA_id:094669 AY373335 clone Dpcom141 2.28.1.8.1.2.8.999 poor quality 24 seqs prokMSA_id:093174 AB118673 Alpha C-11 strain:C-11 prokMSA_id:020068 AF141495 alpha clone CRE-PA4 prokMSA_id:053870 AF141526 alpha clone CRE-PA47 prokMSA_id:025547 AF141529 alpha clone CRE-PA51 prokMSA_id:033511 AF141548 alpha clone CRE-PA80 prokMSA_id:025169 AF245342 SA27 prokMSA_id:044687 AF361186 alpha prokMSA_id:021027 AF446245 alpha Lig060299-11.8 prokMSA_id:058255 AF544649 alpha DGGE gel band H7-6 prokMSA_id:044051 AJ232852 clone LRS3 prokMSA_id:057411 AJ517864 clone E57.6 prokMSA_id:057410 AJ517865 clone B12.1 prokMSA_id:057407 AJ517872 clone M35.1 prokMSA_id:057406 AJ517873 clone M35.6 prokMSA_id:057011 AJ518562 clone Qui4P1-91 prokMSA_id:074113 AJ518668 clone Sai2P2-66 prokMSA_id:066854 AY096160 clone F2-22 prokMSA_id:077243 AY168740 clone HC-30 prokMSA_id:085099 AY251216 alpha clone 1B_28 prokMSA_id:090348 AY327154 clone ZB58 prokMSA_id:005819 D13474 Rhodobacter capsulatus str. ATH 2.3.1 ATCC 11166 . prokMSA_id:005813 M34129 Rhodobacter capsulatus str. B10 ATCC 33303. prokMSA_id:035618 U81665 clone vadinBB47 prokMSA_id:050995 U81746 clone vadinHB18 2.28.1.8.1.2.9 ENVIRONMENTAL_CLONE_JN8C 1 seq 2.28.1.8.1.2.9.999 poor quality 1 seq prokMSA_id:005821 Z69273 clone JN8c. 2.28.1.8.2 RHODOVULUM_GROUP 83 seqs 2.28.1.8.2.1 RHV.ADRIATICUM_SUBGROUP 29 seqs 2.28.1.8.2.1.001 OTU 4 seqs prokMSA_id:060395 AF513442 Rhodobacter group LA38BS prokMSA_id:077962 AJ401206 Rhodovulum sp. AT2111 prokMSA_id:005825 D16418 Rhodovulum adriaticum DSM 2781. prokMSA_id:005823 D32245 Rhodovulum sp. str. MB253. 2.28.1.8.2.1.002 OTU 1 seq prokMSA_id:005822 Y15012 Rhodovulum robiginosum str. N2. 2.28.1.8.2.1.003 OTU 1 seq prokMSA_id:035622 AF359530 Marine ATAM407_62 2.28.1.8.2.1.004 OTU 2 seqs prokMSA_id:062507 AF513932 Rhodobacter group clone LA4-B3 prokMSA_id:062500 AF513935 Rhodobacter group clone LA4-B22N 2.28.1.8.2.1.005 OTU 6 seqs prokMSA_id:077237 AJ534213 Jannaschia sp. DFL-16 isolate DFL-16 prokMSA_id:076848 AJ534216 Jannaschia sp. DFL-27 isolate DFL-27 prokMSA_id:076961 AJ534217 Jannaschia sp. DFL-30 isolate DFL-30 prokMSA_id:076953 AJ534218 Jannaschia sp. DFL-31 isolate DFL-31 prokMSA_id:076596 AJ534220 Jannaschia sp. DFL-36 isolate DFL-36 prokMSA_id:077178 AJ534221 Jannaschia sp. DFL-38 isolate DFL-38 2.28.1.8.2.1.006 OTU 1 seq prokMSA_id:078290 AJ401207 Rhodovulum sp. AT2114 2.28.1.8.2.1.007 OTU 1 seq prokMSA_id:082626 AY214839 alpha clone BB-2-C6F 2.28.1.8.2.1.999 poor quality 13 seqs prokMSA_id:019158 AF055812 Marine 'Bird Shoal 1-2' prokMSA_id:016596 AF055818 Marine 'Bird Shoal 8-1' prokMSA_id:039582 AF055822 Marine 'Sippewissett 2-21' prokMSA_id:029216 AF332287 clone C12-18 prokMSA_id:053034 AF460945 Marine SIMO-IS204 prokMSA_id:077911 AJ401205 Rhodovulum sp. AT2110 prokMSA_id:070840 AJ431348 alpha isolate ikaite un-c2 prokMSA_id:038066 AY038913 Marine SE37 prokMSA_id:057341 AY149621 Marine SIMO IS-S76-242 prokMSA_id:057345 AY149622 Marine SIMO IS-S76-279 prokMSA_id:056808 AY149781 alpha SIMO CL-S29-17 prokMSA_id:056790 AY149810 alpha SIMO CL-S29-51 prokMSA_id:005824 D13476 Rhodovulum adriaticum ATCC 35885 . 2.28.1.8.2.2 RHV.SULFIDOPHILUM_SUBGROUP 54 seqs 2.28.1.8.2.2.001 OTU 10 seqs prokMSA_id:060362 AF513477 Rhodobacter group PH33 prokMSA_id:078323 AJ401214 Rhodovulum sp. AR2102 prokMSA_id:005840 D16420 Rhodovulum sp. str. MB260. prokMSA_id:005831 D16422 Rhodovulum sulfidophilum str. TW13. prokMSA_id:005834 D16422 Rhodovulum sulfidophilum str. TW13. prokMSA_id:073644 D16423 R. sulfidophilum prokMSA_id:005832 D16423 Rhodovulum sulfidophilum str. W4 DSM 1374 . prokMSA_id:005836 D16430 Rhodovulum sulfidophilum str. W12 DSM 2351. prokMSA_id:005838 D32246 Rhodovulum sp. str. MB263. prokMSA_id:005835 U55277 Rhodovulum sulfidophilum str. W-1S FERM P-15320. 2.28.1.8.2.2.002 OTU 1 seq prokMSA_id:005839 AB015526 str. BD1-17. 2.28.1.8.2.2.003 OTU 2 seqs prokMSA_id:062339 AB079635 Rhodovulum strictum prokMSA_id:005830 D16419 Rhodovulum strictum str. MB-G2. 2.28.1.8.2.2.004 OTU 1 seq prokMSA_id:005829 D13479 Rhodovulum euryhalinum str. KA-65 DSM 4868 . 2.28.1.8.2.2.005 OTU 2 seqs prokMSA_id:091389 AY345479 K2-91B prokMSA_id:005828 D16426 Rhodovulum euryhalinum str. KA-65 DSM 4868 . 2.28.1.8.2.2.006 OTU 1 seq prokMSA_id:005827 AF142894 Rhodovulum EKHO-11. 2.28.1.8.2.2.007 OTU 1 seq prokMSA_id:005826 Y15011 Rhodovulum iodosum str. N1. 2.28.1.8.2.2.008 OTU 1 seq prokMSA_id:026804 AB077338 alpha clone:TYM--1 2.28.1.8.2.2.010 OTU 1 seq prokMSA_id:030868 AJ315683 Alpha ML42 strain ML42 2.28.1.8.2.2.011 OTU 1 seq prokMSA_id:033175 AF355035 alpha Arctic96B-9 2.28.1.8.2.2.013 OTU 3 seqs prokMSA_id:074675 AF356017 clone BP102 prokMSA_id:033472 AF356024 clone S49 prokMSA_id:029492 AF356027 clone RO5 2.28.1.8.2.2.014 OTU 1 seq prokMSA_id:037946 AF328184 clone KS36 2.28.1.8.2.2.015 OTU 1 seq prokMSA_id:060184 AJ347025 clone TK03 2.28.1.8.2.2.016 OTU 1 seq prokMSA_id:060360 AF465833 Rhodovulum inexpectatum strain FRR-10T 2.28.1.8.2.2.017 OTU 1 seq prokMSA_id:062332 AB079682 Rhodovulum sp. CP-10 2.28.1.8.2.2.018 OTU 1 seq prokMSA_id:062505 AF513931 Rhodobacter group clone LA4-A4N 2.28.1.8.2.2.019 OTU 1 seq prokMSA_id:066547 AY100533 clone cvf74038 2.28.1.8.2.2.020 OTU 1 seq prokMSA_id:077846 AJ401215 Rhodovulum sp. AR2111 2.28.1.8.2.2.021 OTU 1 seq prokMSA_id:079141 AF382105 clone ZA2526c 2.28.1.8.2.2.022 OTU 1 seq prokMSA_id:080157 AY193164 clone BTM11 2.28.1.8.2.2.023 OTU 1 seq prokMSA_id:080948 AY193156 clone BMS13 2.28.1.8.2.2.024 OTU 1 seq prokMSA_id:081430 AY192057 alpha clone P55-GM4R-t 2.28.1.8.2.2.025 OTU 1 seq prokMSA_id:082177 AY214344 Rhodovulum sp. A_wp02224 2.28.1.8.2.2.026 OTU 1 seq prokMSA_id:088352 AY327151 clone ZB57 2.28.1.8.2.2.027 OTU 1 seq prokMSA_id:089667 AJ567572 alpha clone MBAE3 2.28.1.8.2.2.028 OTU 1 seq prokMSA_id:090629 AY327153 clone ZB55. 2.28.1.8.2.2.029 OTU 1 seq prokMSA_id:091577 AY345456 K91 2.28.1.8.2.2.030 OTU 1 seq prokMSA_id:091915 AY344394 clone K2-S-14 2.28.1.8.2.2.031 OTU 1 seq prokMSA_id:094143 AJ581592 alpha clone KCM-B-56 2.28.1.8.2.2.032 OTU 1 seq prokMSA_id:097423 AJ575940 gamma clone T2-PP12-403 2.28.1.8.2.2.999 poor quality 11 seqs prokMSA_id:040887 AB041279 ECS9 prokMSA_id:043581 AB041280 ECS10 prokMSA_id:040761 AF234069 #0319-6D13 prokMSA_id:075950 AF344291 alpha DGGE band GL6.1 prokMSA_id:068242 AF365477 clone BM89MF1BF5 prokMSA_id:027083 AF384175 Rhizobium sp. S3 prokMSA_id:064873 AJ412668 clone 112 prokMSA_id:074358 AY145621 alpha clone DC11-51-10 prokMSA_id:083700 AY263729 alpha clone FBR15 prokMSA_id:005837 D13475 Rhodovulum sulfidophilum str. W-4 . prokMSA_id:005833 X89362 clone R2102. 2.28.1.8.3 HYPHOMONAS_GROUP 116 seqs 2.28.1.8.3.1 CAU.HALOBACTEROIDES_SUBGROUP 52 seqs 2.28.1.8.3.1.001 OTU 11 seqs prokMSA_id:005848 AB008849 NCIMB 2022. prokMSA_id:005849 AB008850 NCIMB 2209. prokMSA_id:005845 AJ007804 Caulobacter halobacteroides ATCC 15269 . prokMSA_id:005841 AJ007807 Caulobacter maris ATCC 15268 . prokMSA_id:049200 AJ227802 Maricaulis maris strain ATCC 15268 prokMSA_id:033484 AJ227803 Maricaulis maris strain ATCC 15269 prokMSA_id:005851 AJ227805 Maricaulis MCS11 str. MCS11. prokMSA_id:005855 AJ227810 Maricaulis MCS28 str. MCS28. prokMSA_id:049396 AJ301664 Maricaulis sp. MCS10 strain MCS10 prokMSA_id:032951 AJ301665 Maricaulis sp. MCS30 strain MCS30 prokMSA_id:027292 AJ301666 Maricaulis sp. MCS31 strain MCS31 2.28.1.8.3.1.002 OTU 4 seqs prokMSA_id:005853 AJ227808 Maricaulis sp. strain MCS25 prokMSA_id:005854 AJ227809 Maricaulis sp. strain MCS26 prokMSA_id:026948 AJ301667 Maricaulis virginensis strain VC5 prokMSA_id:072693 AY007678 Caulobacter sp. JP68 2.28.1.8.3.1.003 OTU 3 seqs prokMSA_id:005850 AJ227804 Maricaulis MCS06 str. MCS06. prokMSA_id:005852 AJ227806 Maricaulis MCS18 str. MCS18. prokMSA_id:062452 AY102031 Alpha HTCC196 2.28.1.8.3.1.004 OTU 1 seq prokMSA_id:005847 AJ227811 Caulobacter sp. str. MCS33. 2.28.1.8.3.1.005 OTU 1 seq prokMSA_id:005846 AF142857 Maricaulis BURTON-39. 2.28.1.8.3.1.006 OTU 1 seq prokMSA_id:024031 AF425757 Maricaulis sp. clone MERTZ_0CM_265 2.28.1.8.3.1.009 OTU 5 seqs prokMSA_id:025389 AF186701 Alpha MC-4 prokMSA_id:049617 AJ294357 alphaproteobacterium C116-18 strain C11-18 prokMSA_id:040525 AJ309862 Oceanicaulis alexandrii strain C116-18 prokMSA_id:074313 AJ309863 Oceanicaulis alexandrii strain C116-3 prokMSA_id:068661 AJ439369 Caulobacter sp. WRs-1 isolate WRs-1 2.28.1.8.3.1.010 OTU 1 seq prokMSA_id:031210 AF194388 alpha kpc123rc 2.28.1.8.3.1.011 OTU 1 seq prokMSA_id:038570 AF328178 clone KS29 2.28.1.8.3.1.012 OTU 1 seq prokMSA_id:044677 AF255630 alpha clone Ebpr9 2.28.1.8.3.1.013 OTU 1 seq prokMSA_id:052259 AF194390 Maricaulis sp. kbc07 2.28.1.8.3.1.014 OTU 1 seq prokMSA_id:060393 AF513444 Hyphomonas group LA49 2.28.1.8.3.1.015 OTU 1 seq prokMSA_id:061139 AF530128 Alpha MGP-1 2.28.1.8.3.1.016 OTU 1 seq prokMSA_id:063287 AF523932 clone RCP1-39 2.28.1.8.3.1.017 OTU 1 seq prokMSA_id:067827 AY082480 alpha clone 44a-U2-1 2.28.1.8.3.1.018 OTU 1 seq prokMSA_id:088159 AY328757 DSSD59 2.28.1.8.3.1.019 OTU 1 seq prokMSA_id:090592 AY315336 rumen clone JRCJ67 2.28.1.8.3.1.999 poor quality 16 seqs prokMSA_id:022748 AB010602 clone ASB029 prokMSA_id:023574 AB010603 clone ASB031 prokMSA_id:090768 AB111848 prokMSA_id:018320 AF025565 Caulobacter sp. MED22 prokMSA_id:048975 AF194389 Maricaulis maris kpc38f prokMSA_id:049872 AF261047 Caulobacter sp. SKA25 prokMSA_id:068235 AF365486 clone BM89MF1BH9 prokMSA_id:031718 AF441882 alpha clone CD13H11 prokMSA_id:047214 AF441979 alpha clone CD12G4 prokMSA_id:043636 AF441997 alpha clone CD12E1 prokMSA_id:027595 AJ315697 Alpha ML37 strain ML37 prokMSA_id:060164 AJ347050 clone TK80 prokMSA_id:060160 AJ347054 clone TK97 prokMSA_id:005842 M83807 Caulobacter sp. str. MCS10. prokMSA_id:005843 M83809 Caulobacter sp. str. MCS18. prokMSA_id:005844 M83811 Caulobacter sp. str. MCS6. 2.28.1.8.3.2 HYM.JANNASCHIANA_SUBGROUP 59 seqs 2.28.1.8.3.2.004 OTU 3 seqs prokMSA_id:005861 AF159649 clone HstpL7. prokMSA_id:005873 U41088 clone HstpL3. prokMSA_id:005874 U41091 clone HstpL6. 2.28.1.8.3.2.005 OTU 7 seqs prokMSA_id:005860 AF082789 Hyphomonas jannaschiana str. VP-2 DSM 5153 . prokMSA_id:005866 AF082790 Hyphomonas adhaerens str. MHS-3. prokMSA_id:005868 AF082792 Hyphomonas jannaschiana str. VP-3. prokMSA_id:005869 AF082793 Hyphomonas jannaschiana str. VP-4. prokMSA_id:005872 AF082799 Hyphomonas jannaschiana str. VP-1. prokMSA_id:005865 AJ227814 Hyphomonas jannaschiana str. VP-2 ATCC 33883 . prokMSA_id:081308 AY216440 clone KM82 2.28.1.8.3.2.007 OTU 3 seqs prokMSA_id:005863 AJ227807 Caulobacter MCS23 str. MCS23. prokMSA_id:068666 AJ439370 Caulobacter sp. WPl-11 isolate WPl-11 prokMSA_id:068660 AJ439371 Caulobacter sp. SIg-7 isolate SIg-7 2.28.1.8.3.2.010 OTU 13 seqs prokMSA_id:005867 AF082791 Hyphomonas johnsonii str. MHS-2. prokMSA_id:005859 AF082797 Hyphomonas oceanitis str. SCH89 IFAM 1325 . prokMSA_id:045671 AF359546 Marine SCRIPPS_739 prokMSA_id:083316 AJ557839 Marine arctic deep-sea FB12 prokMSA_id:083503 AJ557842 Marine arctic deep-sea HG12 prokMSA_id:085812 AJ557847 Marine arctic deep-sea FG15 prokMSA_id:086459 AJ557850 Marine arctic deep-sea HA12 prokMSA_id:085490 AJ557857 Marine arctic deep-sea FH7 prokMSA_id:085403 AJ557859 Marine arctic deep-sea FE9 prokMSA_id:084176 AJ557862 Marine arctic deep-sea HB10 prokMSA_id:086059 AJ557872 Marine arctic deep-sea HH9 prokMSA_id:086609 AY226331 Hyphomonas sp. clone UBBB-4 prokMSA_id:035460 U85839 Hyphomonas sp. SW47 2.28.1.8.3.2.011 OTU 1 seq prokMSA_id:018609 AF234756 sludge S36 2.28.1.8.3.2.012 OTU 1 seq prokMSA_id:018991 AF359547 Marine SCRIPPS_423 2.28.1.8.3.2.013 OTU 10 seqs prokMSA_id:005876 AF082794 Hyphomonas hirschiana str. VP-5 DSM 5152 . prokMSA_id:005870 AF082795 Hyphomonas rosenbergii str. VP-6. prokMSA_id:005871 AF082796 Hyphomonas polymorpha str. Pr-727. prokMSA_id:005877 AF082798 Hyphomonas neptunium str. LE670 IFAM LE670 . prokMSA_id:040367 AF445717 alpha clone SM2C07 prokMSA_id:005862 AJ224047 Hyphomonas sp. prokMSA_id:005864 AJ227813 Hyphomonas polymorpha DSM 2665. prokMSA_id:073023 AY145565 Hyphomonas sp. AP-32 prokMSA_id:070350 AY145567 Hyphomicrobiaceae AP-34 prokMSA_id:091350 AY344392 clone K2-30-32 2.28.1.8.3.2.014 OTU 1 seq prokMSA_id:043442 AJ421782 Hirschia baltica strain DSM 5838T 2.28.1.8.3.2.015 OTU 1 seq prokMSA_id:092876 AY354146 clone pIR3BF04 2.28.1.8.3.2.016 OTU 1 seq prokMSA_id:095991 AY375128 clone F52 2.28.1.8.3.2.017 OTU 1 seq prokMSA_id:096518 AY375112 clone F15 2.28.1.8.3.2.999 poor quality 17 seqs prokMSA_id:020118 AF025319 Alpha KAT6 prokMSA_id:019116 AF025321 Alpha KAT8 prokMSA_id:005875 AF030778 clone Adriatic7. prokMSA_id:050317 AF182025 Hyphomonas sp. BAL52 prokMSA_id:031274 AF194400 Hyphomonas sp. kbc20 prokMSA_id:035730 AF245650 alpha NAC60-9 prokMSA_id:045503 AF261046 Hyphomonas oceanitis prokMSA_id:043293 AF446304 alpha FL14F04 prokMSA_id:055434 AF531018 Alpha Mzj3 prokMSA_id:043503 AJ308273 clone F99_11 prokMSA_id:081947 AJ550429 clone AS 60 prokMSA_id:056836 AY149736 alpha SIMO CL-S30-64 prokMSA_id:056799 AY149795 alpha SIMO CL-S29-35 prokMSA_id:086489 AY239004 Marine HP13 prokMSA_id:005858 M83806 Hyphomonas jannaschiana str. VP-1 ATCC 33882. prokMSA_id:005856 M83812 Hyphomonas sp. str. MHS3. prokMSA_id:005857 X52909 Hirschia baltica IFAM 1418 . 2.28.1.8.3.3 ENVIRONMENTAL_SBR_CLONES 5 seqs 2.28.1.8.3.3.999 poor quality 5 seqs prokMSA_id:083145 AY214809 alpha clone BB-2-D3R prokMSA_id:005880 X84455 str. SBR1010. prokMSA_id:005881 X84522 str. SBR1094. prokMSA_id:005878 X84537 str. SBR1111. prokMSA_id:005879 X84579 str. SBR2040. 2.28.1.8.4 ENVIRONMENTAL_CLONE_SAR102 6 seqs 2.28.1.8.4.001 OTU 1 seq prokMSA_id:005882 L35460 Sargasso Sea clone SAR 102. 2.28.1.8.4.002 OTU 1 seq prokMSA_id:093834 AJ581590 alpha clone KCM-B-60 2.28.1.8.4.999 poor quality 4 seqs prokMSA_id:027250 AY038450 alpha clone CD3G1 prokMSA_id:052121 AY038466 alpha clone CD2E1 prokMSA_id:050885 AY038567 alpha clone CD2A7 prokMSA_id:048034 U78945 alpha 2.28.1.8.5 RICKETTSIA_AND_OTHERS 1183 seqs 2.28.1.8.5.2 ENVIRONMENTAL_CLONE_16-7 1 seq 2.28.1.8.5.2.999 poor quality 1 seq prokMSA_id:005887 L11965 Pacific Ocean station 16 100m depth clone 2.28.1.8.5.3 ENVIRONMENTAL_CLONE_PLY43_SUBGROUP 480 seqs 2.28.1.8.5.3.009 OTU 1 seq prokMSA_id:005904 U75258 clone SAR241. 2.28.1.8.5.3.011 OTU 1 seq prokMSA_id:005902 U75256 clone SAR211. 2.28.1.8.5.3.014 OTU 1 seq prokMSA_id:005900 U75254 clone SAR464. 2.28.1.8.5.3.018 OTU 1 seq prokMSA_id:005897 U70686 clone OM155. 2.28.1.8.5.3.022 OTU 1 seq prokMSA_id:018749 AF469386 clone CTD40B 2.28.1.8.5.3.024 OTU 3 seqs prokMSA_id:050807 AF353226 alpha clone Arctic96A-7 prokMSA_id:019573 AF353229 alpha clone Arctic96B-22 prokMSA_id:035677 AF388881 alpha clone GOBB3-CL243 2.28.1.8.5.3.027 OTU 1 seq prokMSA_id:021397 AF469344 alpha CTD31B 2.28.1.8.5.3.031 OTU 10 seqs prokMSA_id:052927 AF151273 marine alpha clone M3-150-3 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053094 AF151299 marine alpha clone M7-400-4 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:024058 AF285608 alpha clone Car162 prokMSA_id:024388 AF353212 alpha clone Arctic96AD-8 prokMSA_id:065136 AY095670 alpha OS2K-23 prokMSA_id:065018 AY095835 alpha ARCT2-24 prokMSA_id:079686 AY220708 alpha clone WCPAP4 prokMSA_id:080410 AY220718 alpha clone WCPAP14 prokMSA_id:005901 U75255 clone SAR203. prokMSA_id:005903 U75257 clone SAR220. 2.28.1.8.5.3.032 OTU 8 seqs prokMSA_id:032344 AF316787 Crater Lake CL120-34 prokMSA_id:052131 AF418965 clone HTH6 prokMSA_id:060800 AF491656 alpha clone SFD1-12 prokMSA_id:060793 AF491667 alpha clone SFD1-3 prokMSA_id:085388 AF534425 alpha clone TLM01/TLMdgge14 prokMSA_id:055574 AY145598 alpha clone DC8-48-1 prokMSA_id:074435 U76102 arc22 prokMSA_id:031774 Z99997 freshwater LD12 2.28.1.8.5.3.033 OTU 1 seq prokMSA_id:027398 AF194387 alpha kpc121rc 2.28.1.8.5.3.034 OTU 1 seq prokMSA_id:030286 AF469334 alpha 33-FL82B98 2.28.1.8.5.3.037 OTU 1 seq prokMSA_id:034081 AF194383 alpha kpj28f 2.28.1.8.5.3.038 OTU 2 seqs prokMSA_id:068975 AY033322 alpha MB21A02 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:034714 U81532 marine p712-15 2.28.1.8.5.3.043 OTU 24 seqs prokMSA_id:053077 AF151230 marine alpha clone A2-021-1 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054377 AF151231 marine alpha clone A2-021-2 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053061 AF151233 marine alpha clone A2-021-4 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:052960 AF151234 marine alpha clone A2-021-5 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054413 AF151235 marine alpha clone A2-021-6 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:040484 AF245651 alpha NAC60-10 prokMSA_id:048485 AF353214 alpha clone Arctic95B-1 prokMSA_id:052749 AF353215 alpha clone Arctic95C-7 prokMSA_id:041176 AF353222 alpha clone Arctic95C-4 prokMSA_id:022763 AF353223 alpha clone Arctic95D-8 prokMSA_id:017270 AF353228 alpha clone Arctic97A-1 prokMSA_id:037410 AF440726 alpha ARCT1-56 prokMSA_id:036382 AJ400351 marine ZD0410 prokMSA_id:068990 AY033299 alpha MB11B07 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:068988 AY033303 alpha MB11D08 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:049361 AY033327 alpha MB13E08 prokMSA_id:063102 AY093481 clone MB-C2-128 prokMSA_id:055800 AY095679 alpha OR-105 prokMSA_id:065123 AY095687 alpha OR-118 prokMSA_id:064899 AY095881 alpha pT-410 prokMSA_id:092967 AY354815 alpha clone PLY-P1-92 prokMSA_id:092987 AY354820 alpha clone PLY-P2-22 prokMSA_id:092413 AY354822 alpha clone PLY-P2-81 prokMSA_id:092080 AY354825 alpha clone PLY-P3-91 2.28.1.8.5.3.044 OTU 1 seq prokMSA_id:038559 AF469325 alpha 33-PA124B98 2.28.1.8.5.3.045 OTU 1 seq prokMSA_id:039117 AF469343 alpha CTD6B 2.28.1.8.5.3.046 OTU 1 seq prokMSA_id:039904 AF469358 alpha CTD26B 2.28.1.8.5.3.047 OTU 1 seq prokMSA_id:049399 AF469326 alpha 33-PA19B98 2.28.1.8.5.3.048 OTU 1 seq prokMSA_id:053045 AF151270 marine alpha clone M3-050-10 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S 2.28.1.8.5.3.049 OTU 1 seq prokMSA_id:053064 AF151280 marine alpha clone M3-450-5 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S 2.28.1.8.5.3.051 OTU 1 seq prokMSA_id:053491 AF151279 marine alpha clone M3-450-4 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S 2.28.1.8.5.3.053 OTU 151 seqs prokMSA_id:054108 AF151220 marine alpha clone A1-010-1 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053906 AF151221 marine alpha clone A1-010-2 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054355 AF151222 marine alpha clone A1-010-3 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054272 AF151223 marine alpha clone A1-010-4 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053378 AF151224 marine alpha clone A1-010-5 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053668 AF151225 marine alpha clone A1-450-1 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054650 AF151226 marine alpha clone A1-450-2 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054946 AF151227 marine alpha clone A1-450-3 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053801 AF151228 marine alpha clone A1-450-4 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054067 AF151229 marine alpha clone A1-450-5 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054089 AF151232 marine alpha clone A2-021-3 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054605 AF151236 marine alpha clone A2-200-1 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054005 AF151237 marine alpha clone A2-200-2 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053125 AF151238 marine alpha clone A2-200-3 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054662 AF151239 marine alpha clone A2-200-4 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053528 AF151240 marine alpha clone A2-200-5 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053948 AF151241 marine alpha clone B-015-1 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:074776 AF151242 marine alpha clone B-015-2 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054132 AF151243 marine alpha clone B-015-3 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053644 AF151244 marine alpha clone B-015-4 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054135 AF151247 marine alpha clone M2-025-2 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053873 AF151248 marine alpha clone M2-025-3 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:052938 AF151249 marine alpha clone M2-025-4 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054798 AF151252 marine alpha clone M3-005-2 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054248 AF151253 marine alpha clone M3-005-3 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054581 AF151254 marine alpha clone M3-005-4 ; -23S intergenic spacer region complete ; and tRNA-Ile complete prokMSA_id:053093 AF151255 marine alpha clone M3-005-5 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053301 AF151256 marine alpha clone M3-005-6 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053239 AF151257 marine alpha clone M3-005-7 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054768 AF151258 marine alpha clone M3-005-8 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054706 AF151259 marine alpha clone M3-005-9 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053706 AF151260 marine alpha clone M3-005-10 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053903 AF151261 marine alpha clone M3-050-1 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053202 AF151262 marine alpha clone M3-050-2 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053121 AF151263 marine alpha clone M3-050-3 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053291 AF151264 marine alpha clone M3-050-4 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054168 AF151265 marine alpha clone M3-050-5 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053104 AF151266 marine alpha clone M3-050-6 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053187 AF151267 marine alpha clone M3-050-7 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053143 AF151268 marine alpha clone M3-050-8 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054858 AF151269 marine alpha clone M3-050-9 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054961 AF151271 marine alpha clone M3-150-1 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053603 AF151275 marine alpha clone M3-150-5 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054699 AF151281 marine alpha clone M6-005-1 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054156 AF151282 marine alpha clone M6-005-2 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054031 AF151283 marine alpha clone M6-005-3 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:052986 AF151284 marine alpha clone M6-005-4 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053782 AF151285 marine alpha clone M6-005-5 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054540 AF151286 marine alpha clone M7-005-1 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054453 AF151287 marine alpha clone M7-005-2 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053551 AF151288 marine alpha clone M7-005-3 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054508 AF151289 marine alpha clone M7-005-4 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054316 AF151290 marine alpha clone M7-005-5 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053396 AF151291 marine alpha clone M7-050-1 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053006 AF151292 marine alpha clone M7-050-2 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053106 AF151293 marine alpha clone M7-050-3 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053859 AF151294 marine alpha clone M7-050-4 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053308 AF151295 marine alpha clone M7-050-5 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053497 AF151300 marine alpha clone M7-400-5 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:025270 AF194382 alpha kps09f prokMSA_id:021462 AF245616 alpha NAC1-3 prokMSA_id:017534 AF245624 alpha NAC1-15 prokMSA_id:055658 AF268220 EBAC40E09 ; and tRNA-Ile and tRNA-Ala genes complete prokMSA_id:022850 AF268222 EBAC62A03 prokMSA_id:040239 AF327027 coastal Alaskan Arctic AWS98-19a prokMSA_id:044452 AF327028 coastal Alaskan Arctic AWS98-2a prokMSA_id:033797 AF353208 alpha clone Arctic96A-20 prokMSA_id:040986 AF353209 alpha clone Arctic96B-3 prokMSA_id:043576 AF353210 alpha clone Arctic97C-1 prokMSA_id:033310 AF353211 alpha clone Arctic96B-10 prokMSA_id:039680 AF353213 alpha clone Arctic96B-15 prokMSA_id:020782 AF353216 alpha clone Arctic97B-2 prokMSA_id:043254 AF353217 alpha clone Arctic97B-10 prokMSA_id:018154 AF353218 alpha clone Arctic96A-3 prokMSA_id:028597 AF353219 alpha clone Arctic96B-5 prokMSA_id:040240 AF353220 alpha clone Arctic95B-11 prokMSA_id:023770 AF353221 alpha clone Arctic95C-1 prokMSA_id:031458 AF353224 alpha clone Arctic96B-6 prokMSA_id:038403 AF353225 alpha clone Arctic97B-5 prokMSA_id:023331 AF353227 alpha clone Arctic95A-16 prokMSA_id:051564 AF353230 alpha clone Arctic95A-12 prokMSA_id:028821 AF353231 alpha clone Arctic97A-2 prokMSA_id:047960 AF353232 alpha clone Arctic97A-8 prokMSA_id:028898 AF355034 alpha Arctic96BD-18 prokMSA_id:079196 AF382131 clone ZA3911c prokMSA_id:079390 AF382134 clone ZA3320c prokMSA_id:045119 AF469328 alpha 33-PA14B99 prokMSA_id:038528 AF469331 alpha 33-PA49B00 prokMSA_id:052252 AF469332 alpha 33-PA53B00 prokMSA_id:030588 AF469333 alpha 33-FL128B98 prokMSA_id:074860 AF469337 alpha 33-FL97B99 prokMSA_id:036708 AF469339 alpha 33-FL60B00 prokMSA_id:033725 AF469341 alpha CTD7B prokMSA_id:019414 AF469346 alpha CTD2B prokMSA_id:037983 AF469348 alpha CTD67B prokMSA_id:024841 AF469349 alpha CTD1B prokMSA_id:053990 AF469350 alpha CTD36B prokMSA_id:035985 AF469351 alpha CTD81B prokMSA_id:061205 AF510191 Pelagibacter ubique strain HTCC1062 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:061204 AF510192 Pelagibacter ubique strain HTCC1002 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:071838 AJ400350 marine ZD0409 prokMSA_id:031344 AY033295 alpha EBAC28E08 prokMSA_id:068985 AY033306 alpha MB11E07 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:068983 AY033309 alpha MB11F01 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:068982 AY033312 alpha MB12A07 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:068977 AY033320 alpha MB13H04 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:065201 AY095557 alpha WR-23 prokMSA_id:065199 AY095558 alpha WR-24 prokMSA_id:065196 AY095562 alpha WR-30 prokMSA_id:065193 AY095565 alpha WR-33 prokMSA_id:065191 AY095566 alpha WR-34 prokMSA_id:056217 AY095567 alpha WR-36 prokMSA_id:064965 AY095632 alpha OS3.5K-20 prokMSA_id:064963 AY095636 alpha OS3.5K-24 prokMSA_id:055755 AY095676 alpha OR-101 prokMSA_id:065112 AY095700 alpha OR-210 prokMSA_id:065036 AY095784 alpha HI-40 prokMSA_id:064922 AY095852 alpha pT-110 prokMSA_id:064905 AY095874 alpha pT-401 prokMSA_id:064896 AY095880 alpha pT-409 prokMSA_id:065008 AY095897 alpha SH-1 prokMSA_id:065003 AY095901 alpha SH-103 prokMSA_id:065002 AY095902 alpha SH-104 prokMSA_id:065001 AY095903 alpha SH-105 prokMSA_id:064986 AY095923 alpha SH-317 prokMSA_id:056723 AY102033 Alpha HTCC150 prokMSA_id:078394 AY171309 clone s59m prokMSA_id:078267 AY171317 clone s107 prokMSA_id:077856 AY171341 clone s77 prokMSA_id:078377 AY171353 clone s61 prokMSA_id:077673 AY171389 clone s96 prokMSA_id:080215 AY220723 alpha clone WCPAP19 prokMSA_id:083063 AY226227 alpha clone ABBB-86 prokMSA_id:085124 AY226246 alpha clone BBBB-4 prokMSA_id:084240 AY274842 Bacteroidetes clone C35 prokMSA_id:082782 AY274843 Bacteroidetes clone 3G9 prokMSA_id:086470 AY274867 Bacteroidetes clone 1A3 prokMSA_id:092831 AY354818 alpha clone PLY-P1-120 prokMSA_id:092334 AY354821 alpha clone PLY-P2-29 prokMSA_id:092252 AY354829 alpha clone PLY-P1-100 prokMSA_id:092826 AY354830 alpha clone PLY-P1-114 prokMSA_id:093180 AY360491 clone BSB10-89m prokMSA_id:005905 L10934 clone FL1. prokMSA_id:005908 L10935 clone FL11. prokMSA_id:005889 U13159 clone PLY43. prokMSA_id:029822 U70687 cytophagales OM188 prokMSA_id:005899 U75252 clone OCS12. prokMSA_id:005912 U75253 clone SAR407. prokMSA_id:005898 U75649 clone SAR193. prokMSA_id:005907 X52172 Sargasso Sea clone SAR 11. prokMSA_id:005906 X52280 Sargasso Sea clone SAR 1. 2.28.1.8.5.3.054 OTU 1 seq prokMSA_id:053945 AF151297 marine alpha clone M7-400-2 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S 2.28.1.8.5.3.056 OTU 4 seqs prokMSA_id:053408 AF151272 marine alpha clone M3-150-2 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054269 AF151277 marine alpha clone M3-450-2 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:054805 AF151278 marine alpha clone M3-450-3 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:053959 AF151296 marine alpha clone M7-400-1 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S 2.28.1.8.5.3.057 OTU 1 seq prokMSA_id:054561 AF151274 marine alpha clone M3-150-4 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S 2.28.1.8.5.3.058 OTU 1 seq prokMSA_id:054614 AF151245 marine alpha clone B-015-5 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S 2.28.1.8.5.3.059 OTU 1 seq prokMSA_id:054657 AF151276 marine alpha clone M3-450-1 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S 2.28.1.8.5.3.060 OTU 1 seq prokMSA_id:054907 AF151250 marine alpha clone M2-025-5 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S 2.28.1.8.5.3.061 OTU 1 seq prokMSA_id:054935 AF151246 marine alpha clone M2-025-1 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S 2.28.1.8.5.3.062 OTU 1 seq prokMSA_id:054994 AF151298 marine alpha clone M7-400-3 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S 2.28.1.8.5.3.063 OTU 1 seq prokMSA_id:060628 AF406547 alpha clone AEGEAN_233 2.28.1.8.5.3.064 OTU 1 seq prokMSA_id:064156 AF477859 clone 26-UMH 8% pond 2.28.1.8.5.3.065 OTU 1 seq prokMSA_id:064890 AY095890 alpha pT-432 2.28.1.8.5.3.066 OTU 1 seq prokMSA_id:064898 AY095883 alpha pT-413 2.28.1.8.5.3.067 OTU 1 seq prokMSA_id:064906 AY095873 alpha pT-215R 2.28.1.8.5.3.068 OTU 1 seq prokMSA_id:065081 AY095737 alpha NL-134 2.28.1.8.5.3.069 OTU 1 seq prokMSA_id:065137 AY095669 alpha OS2K-21 2.28.1.8.5.3.070 OTU 1 seq prokMSA_id:080084 AY220719 alpha clone WCPAP15 2.28.1.8.5.3.071 OTU 1 seq prokMSA_id:080272 AY220722 alpha clone WCPAP18 2.28.1.8.5.3.072 OTU 1 seq prokMSA_id:092540 AY354839 alpha clone PLY-P2-98 2.28.1.8.5.3.073 OTU 2 seqs prokMSA_id:093001 AY354824 alpha clone PLY-P3-81 prokMSA_id:092979 AY354826 alpha clone PLY-P3-92 2.28.1.8.5.3.074 OTU 2 seqs prokMSA_id:093680 AY360494 clone BSB12-364m prokMSA_id:093555 AY360495 clone BSB12-89m 2.28.1.8.5.3.999 poor quality 241 seqs prokMSA_id:029484 AB022516 KC103 prokMSA_id:035010 AB041286 ECS16 prokMSA_id:041141 AB041287 ECS17 prokMSA_id:030604 AB041288 ECS18 prokMSA_id:040685 AB041289 ECS19 prokMSA_id:041827 AB047144 SW9 prokMSA_id:031064 AB047145 SW10 prokMSA_id:051667 AF000273 marine prokMSA_id:029671 AF000276 marine prokMSA_id:020479 AF000281 marine prokMSA_id:022378 AF000287 marine prokMSA_id:032273 AF000635 marine pD-3 prokMSA_id:028776 AF000638 marine pD-6 prokMSA_id:040744 AF000640 marine pD-8 prokMSA_id:045927 AF000642 marine pD-12 prokMSA_id:036966 AF000644 marine pD-16 prokMSA_id:027218 AF000649 marine pD-25 prokMSA_id:049367 AF000651 marine pD-28 prokMSA_id:024465 AF001506 marine pG-1 prokMSA_id:021893 AF001510 marine pG-19 prokMSA_id:047489 AF001512 marine pG-24 prokMSA_id:051001 AF001514 marine pG-28 prokMSA_id:019233 AF001518 marine pG-35 prokMSA_id:049909 AF001521 marine pG-45 prokMSA_id:005910 AF055221 clone pC2-102. prokMSA_id:026844 AF055222 marine pC2-102 3' prokMSA_id:032589 AF055227 marine pC2-127 prokMSA_id:038738 AF055233 marine pC2-28 5' prokMSA_id:031403 AF055234 marine pC2-28 3' prokMSA_id:030961 AF055237 marine pC2-8 3' prokMSA_id:033244 AF055244 marine pC2-33 5' prokMSA_id:053072 AF055246 marine pC2-4 5' prokMSA_id:050914 AF055247 marine pC2-43 5' prokMSA_id:005911 AF055254 clone pC8-31. prokMSA_id:022287 AF055255 marine pC8-54 5' prokMSA_id:034695 AF107502 SY1-49 prokMSA_id:050593 AF114624 alpha SUR-FREE-27 prokMSA_id:043488 AF114625 alpha SUR-FREE-28 prokMSA_id:019192 AF114626 alpha SUR-FREE-29 prokMSA_id:042676 AF114644 alpha DCM-ATT-22 prokMSA_id:070277 AF114645 alpha SUR-FREE-3 prokMSA_id:019211 AF114649 alpha SUR-FREE-8 prokMSA_id:025036 AF114651 alpha SUR-FREE-2 prokMSA_id:035821 AF114654 alpha 400m-FREE-18 prokMSA_id:026008 AF114656 alpha 400m-FREE-18 prokMSA_id:030583 AF114676 alpha DCM-FREE-30 prokMSA_id:019431 AF141395 alpha clone CR-FL10 prokMSA_id:024377 AF141479 alpha clone CRE-FL63 prokMSA_id:035978 AF141539 alpha clone CRE-PA70 prokMSA_id:021314 AF141580 alpha clone CRO-FL1 prokMSA_id:045355 AF141582 alpha clone CRO-FL3 prokMSA_id:038508 AF141583 alpha clone CRO-FL4 prokMSA_id:021610 AF141585 alpha clone CRO-FL7 prokMSA_id:036863 AF141588 alpha clone CRO-FL10 prokMSA_id:029520 AF141590 alpha clone CRO-FL12 prokMSA_id:044535 AF141593 alpha clone CRO-FL15 prokMSA_id:042739 AF141598 alpha clone CRO-FL23 prokMSA_id:048214 AF141601 alpha clone CRO-FL26 prokMSA_id:040855 AF194380 alpha kpj413f prokMSA_id:048895 AF194381 alpha kpj430f prokMSA_id:050669 AF194384 alpha kpj142f prokMSA_id:025657 AF194385 alpha kpj411f prokMSA_id:028511 AF194386 alpha kpj374rc prokMSA_id:042528 AF245620 alpha NAC1-7 prokMSA_id:043947 AF245638 alpha NAC11-13 prokMSA_id:049515 AF245643 gamma NAC60-1 prokMSA_id:019251 AF245648 alpha NAC60-7 prokMSA_id:016483 AF245653 alpha NAC60-13 prokMSA_id:042727 AF245655 alpha NAC60-15 prokMSA_id:020254 AF245656 alpha NAC60-17 prokMSA_id:032869 AF245657 alpha NAC60-19 prokMSA_id:039441 AF257300 marine alpha DHB-52 prokMSA_id:044007 AF257301 marine alpha DHB-53 prokMSA_id:045008 AF287017 alpha EC-I3 prokMSA_id:023387 AF287018 alpha EC-I7 prokMSA_id:044302 AF287046 Cytophaga sp. EC-I2 prokMSA_id:060688 AF406316 alpha clone AEGEAN_100_27F prokMSA_id:060687 AF406319 alpha clone AEGEAN_106_27F prokMSA_id:060684 AF406322 alpha clone AEGEAN_110_27F prokMSA_id:060679 AF406324 alpha clone AEGEAN_119_27F prokMSA_id:060682 AF406326 alpha clone AEGEAN_124_27F prokMSA_id:060680 AF406328 alpha clone AEGEAN_126_27F prokMSA_id:060681 AF406333 alpha clone AEGEAN_141_27F prokMSA_id:060675 AF406386 alpha clone AEGEAN_127_27F prokMSA_id:060677 AF406387 alpha clone AEGEAN_140_27F prokMSA_id:060676 AF406388 alpha clone AEGEAN_144_27F prokMSA_id:060674 AF406390 alpha clone AEGEAN_178_27F prokMSA_id:060673 AF406391 alpha clone AEGEAN_192_27F prokMSA_id:060672 AF406393 alpha clone AEGEAN_199_27F prokMSA_id:035811 AF428613 clone CRD99-35 prokMSA_id:032339 AF428618 clone CRD99-40 prokMSA_id:040187 AF428619 clone CRD99-41 prokMSA_id:030459 AF428642 clone CRD99-64 prokMSA_id:019626 AF428652 clone CRD99-74 prokMSA_id:051867 AF428654 clone CRD99-76 prokMSA_id:047264 AF428660 clone CRP99-06 prokMSA_id:044931 AF428669 clone CRP99-15 prokMSA_id:050313 AF428676 clone CRP99-22 prokMSA_id:031595 AF428680 clone CRP99-26 prokMSA_id:021364 AF428682 clone CRP99-28 prokMSA_id:048956 AF428702 clone CRP99-48 prokMSA_id:035050 AF428729 clone CRP99-75 prokMSA_id:027627 AF428857 clone CR98-24-51 prokMSA_id:036130 AF428869 clone CR98-24-63 prokMSA_id:031527 AF428885 clone CR98-35-03 prokMSA_id:017459 AF428890 clone CR98-35-08 prokMSA_id:042926 AF428902 clone CR98-35-20 prokMSA_id:034051 AF428904 clone CR98-35-22 prokMSA_id:037346 AF428922 clone CR98-35-40 prokMSA_id:042769 AF428928 clone CR98-35-46 prokMSA_id:046368 AF428935 clone CR98-35-53 prokMSA_id:019037 AF428936 clone CR98-35-54 prokMSA_id:041691 AF428951 clone CR98-35-69 prokMSA_id:049739 AF428971 clone CR99-35-13 prokMSA_id:046374 AF428974 clone CR99-35-16 prokMSA_id:035161 AF428992 clone CR99-35-34 prokMSA_id:025471 AF429000 clone CR99-35-42 prokMSA_id:026232 AF429005 clone CR99-35-47 prokMSA_id:037194 AF429013 clone CR99-35-55 prokMSA_id:052148 AF429023 clone CR99-35-65 prokMSA_id:044939 AF429059 clone CR99-7-25 prokMSA_id:048938 AF429096 clone CR99-7-62 prokMSA_id:046847 AF429114 clone CR99-24-04 prokMSA_id:021010 AF429117 clone CR99-24-07 prokMSA_id:032032 AF429128 clone CR99-24-18 prokMSA_id:032716 AF429141 clone CR99-24-31 prokMSA_id:019150 AF429155 clone CR99-24-45 prokMSA_id:031318 AF429157 clone CR99-24-47 prokMSA_id:036631 AF429167 clone CR99-24-57 prokMSA_id:043681 AF429176 clone CR99-24-66 prokMSA_id:069441 AF466915 alpha isolate DGGE band D42 prokMSA_id:047995 AF469335 alpha 33-FL11B99 prokMSA_id:044881 AF469336 alpha 33-FL85B99 prokMSA_id:036735 AF469342 alpha CTD3B prokMSA_id:020402 AF469347 alpha CTD20B prokMSA_id:030474 AF469357 alpha CTD49B prokMSA_id:064164 AF477850 clone 1-PML 8% pond prokMSA_id:067310 AF494498 alpha clone GOBB3-B04-13-5 prokMSA_id:066453 AF497862 alpha isolate WM11-40 prokMSA_id:066451 AF497865 alpha isolate WB8-12 prokMSA_id:074299 AF497866 alpha isolate WM6-1 prokMSA_id:061199 AF510193 Pelagibacter ubique strain HTCC1051 ; -23S intergenic spacer region complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:058813 AF540037 alpha DGGE gel band ESR BR 2 prokMSA_id:058257 AF544646 gamma DGGE gel band H7-3 prokMSA_id:049241 AJ011162 4-46 clone 4-46 prokMSA_id:065441 AJ318206 isolate Lake-2 prokMSA_id:065437 AJ318207 isolate Lake-3 prokMSA_id:074300 AJ416159 clone Med0-08 prokMSA_id:061755 AJ416190 clone Sta1-30 prokMSA_id:056116 AJ416206 clone Sta2-15 prokMSA_id:061723 AJ416214 clone Sta2-36 prokMSA_id:061707 AJ416236 clone Sta4-13 prokMSA_id:061708 AJ416237 clone Sta4-17 prokMSA_id:061694 AJ416251 clone Sta4-43 prokMSA_id:061690 AJ416252 clone Sta4-46 prokMSA_id:061683 AJ416264 clone Sta5-20 prokMSA_id:061685 AJ416269 clone Sta5-31 prokMSA_id:061676 AJ416280 clone Sta6-09 prokMSA_id:082099 AJ550430 clone AS 27 prokMSA_id:081535 AJ550431 clone AS 32 prokMSA_id:081109 AJ550432 clone AS 76 prokMSA_id:017334 AY038386 alpha clone CD3B5 prokMSA_id:036402 AY038454 alpha clone CD3H10 prokMSA_id:019682 AY038455 Cytophagales clone CD3E2 prokMSA_id:017448 AY038464 alpha clone CD2D12 prokMSA_id:051232 AY038578 Cytophagales clone CD2A2 prokMSA_id:065214 AY095540 alpha WR-3 prokMSA_id:065208 AY095546 alpha WR-11 prokMSA_id:065209 AY095547 alpha WR-12 prokMSA_id:065205 AY095550 alpha WR-15 prokMSA_id:065206 AY095551 alpha WR-16 prokMSA_id:056230 AY095552 alpha WR-17 prokMSA_id:065197 AY095560 alpha WR-26 prokMSA_id:065185 AY095574 alpha pV-1 prokMSA_id:055236 AY095587 alpha pV-17 prokMSA_id:065168 AY095597 alpha pNS-3 prokMSA_id:055581 AY095598 alpha pNS-7 prokMSA_id:065166 AY095600 alpha pNS-12 prokMSA_id:065165 AY095601 alpha pNS-16 prokMSA_id:065167 AY095602 alpha pNS-17 prokMSA_id:065164 AY095603 alpha pNS-18 prokMSA_id:065117 AY095694 alpha OR-201 prokMSA_id:065114 AY095695 alpha OR-202 prokMSA_id:065113 AY095697 alpha OR-206 prokMSA_id:065111 AY095701 alpha OR-211 prokMSA_id:065109 AY095703 alpha OR-215 prokMSA_id:065105 AY095707 alpha OR-220 prokMSA_id:065092 AY095723 alpha NL-110 prokMSA_id:065084 AY095731 alpha NL-124 prokMSA_id:064931 AY095810 alpha CS4K-215 prokMSA_id:065024 AY095824 alpha ARCT2-10 prokMSA_id:055910 AY095849 alpha ARCT2-53 prokMSA_id:064924 AY095850 alpha pT-3 prokMSA_id:064926 AY095851 alpha pT-106 prokMSA_id:064918 AY095856 alpha pT-121 prokMSA_id:064911 AY095861 alpha pT-130 prokMSA_id:064914 AY095862 alpha pT-131 prokMSA_id:055377 AY095866 alpha pT-206 prokMSA_id:064909 AY095870 alpha pT-212 prokMSA_id:064903 AY095872 alpha pT-215F prokMSA_id:064887 AY095892 alpha pT-435 prokMSA_id:064997 AY095905 alpha SH-107 prokMSA_id:064998 AY095907 alpha SH-200R prokMSA_id:064996 AY095911 alpha SH-216 prokMSA_id:064987 AY095924 alpha SH-319 prokMSA_id:083430 AY271857 clone BSW 1 prokMSA_id:083000 AY271858 clone BSW 2 prokMSA_id:088223 AY317115 Alpha SKA48 prokMSA_id:090482 AY317116 Alpha SKA49 prokMSA_id:005913 L11934 Sargasso Sea 10m depth clone BDA1-1. prokMSA_id:005915 L11949 Pacific Ocean station 16 100m depth clone prokMSA_id:005888 L11974 Pacific Ocean station 25 100m depth clone prokMSA_id:005914 M63812 Sargasso Sea clone SAR 95. prokMSA_id:021821 U70684 alpha OM136 prokMSA_id:034616 U70689 alpha OM242 prokMSA_id:040400 U70691 alpha OM258 prokMSA_id:023004 U75259 alpha clone SAR414 prokMSA_id:048520 U75260 alpha clone SAR418 prokMSA_id:052852 U75261 alpha clone SAR425 prokMSA_id:036146 U75262 alpha clone SAR440 prokMSA_id:074549 U75263 alpha clone SAR466 prokMSA_id:034690 U75264 alpha clone SAR490 prokMSA_id:042081 U75265 alpha clone SAR492 prokMSA_id:070582 U76103 arc34 prokMSA_id:046932 U85162 alpha clone ACK-DE33 prokMSA_id:041604 U85164 alpha clone ACK-DH2 prokMSA_id:045681 U85165 alpha clone ACK-M13 prokMSA_id:072229 U85166 alpha clone ACK-W7 prokMSA_id:005916 X89279 clone 17a. prokMSA_id:005909 Z77354 str. 1-140 C11. prokMSA_id:005890 Z77367 str. 1-140 C26. prokMSA_id:005891 Z77440 str. 1-700 C12. prokMSA_id:005892 Z77454 str. 1-700 C3. prokMSA_id:005893 Z77455 str. 1-700 C30. prokMSA_id:005894 Z77457 str. 1-700 C35. prokMSA_id:005895 Z77465 str. 1-700 C42. prokMSA_id:005896 Z77470 str. 1-700 C6. prokMSA_id:047147 Z77554 1-140 C11 prokMSA_id:041346 Z77563 1-140 C26 prokMSA_id:074588 Z77592 1-700 C42 prokMSA_id:018987 Z77596 1-700 C6 2.28.1.8.5.4 HOLOSPORA_SUBGROUP 42 seqs 2.28.1.8.5.4.001 OTU 1 seq prokMSA_id:005921 U65509 unnamed organism. 2.28.1.8.5.4.002 OTU 1 seq prokMSA_id:005920 AF142821 clone BURTON-1. 2.28.1.8.5.4.003 OTU 1 seq prokMSA_id:005919 AF050532 clone WCHA1-65. 2.28.1.8.5.4.004 OTU 2 seqs prokMSA_id:021579 AJ238683 Caedibacter caryophila isolate BGD19 prokMSA_id:005918 X71837 Caedibacter caryophila str. 221 . 2.28.1.8.5.4.005 OTU 2 seqs prokMSA_id:005917 NONE Holospora obtusa. prokMSA_id:022925 X58198 H.obtusa 2.28.1.8.5.4.007 OTU 1 seq prokMSA_id:039058 AF132138 Endosymbiont of Acanthamoeba polyphaga 2.28.1.8.5.4.009 OTU 7 seqs prokMSA_id:052666 AF422627 clone d007 prokMSA_id:042161 AF422628 clone d008F prokMSA_id:040501 AF422634 clone d023 prokMSA_id:049057 AF422640 clone d029 prokMSA_id:040115 AF422642 clone d033 prokMSA_id:048292 AF422645 clone d037 prokMSA_id:036229 AF422667 clone d088 2.28.1.8.5.4.010 OTU 2 seqs prokMSA_id:040401 AF132139 Endosymbiont of Acanthamoeba sp. UWET39 prokMSA_id:064551 AY102614 Endosymbiont of Acanthamoeba sp. TUMK-23 2.28.1.8.5.4.011 OTU 1 seq prokMSA_id:044738 AF292999 Green Bay ferromanganous micronodule MND8 2.28.1.8.5.4.012 OTU 1 seq prokMSA_id:048275 AF422580 clone t005 2.28.1.8.5.4.013 OTU 1 seq prokMSA_id:062401 AF529112 alpha clone FTL75 2.28.1.8.5.4.014 OTU 1 seq prokMSA_id:066535 AY100548 clone cvf116077 2.28.1.8.5.4.015 OTU 1 seq prokMSA_id:066544 AY100537 clone cvf72051 2.28.1.8.5.4.016 OTU 1 seq prokMSA_id:066549 AY100530 clone cvf61074 2.28.1.8.5.4.017 OTU 1 seq prokMSA_id:067831 AY082476 alpha clone 44a-U1-25 2.28.1.8.5.4.018 OTU 1 seq prokMSA_id:072280 AF533508 alpha clone AW2 2.28.1.8.5.4.019 OTU 1 seq prokMSA_id:074136 AJ428412 alpha clone 10B6 2.28.1.8.5.4.020 OTU 1 seq prokMSA_id:076595 AJ518774 alpha clone JG37-AG-102 2.28.1.8.5.4.021 OTU 1 seq prokMSA_id:078256 AB089086 alpha clone:Rs-M08 2.28.1.8.5.4.022 OTU 1 seq prokMSA_id:079042 AY177769 isolate 4x29 2.28.1.8.5.4.023 OTU 2 seqs prokMSA_id:090268 AY328720 DSSD21 prokMSA_id:089373 AY328728 DSSD29 2.28.1.8.5.4.999 poor quality 11 seqs prokMSA_id:034063 AF194189 Caedibacter n36d prokMSA_id:068156 AF365577 clone BT60MF2BA1 prokMSA_id:025992 AF390906 clone ICBTD9 prokMSA_id:030542 AF392623 clone CRB12 prokMSA_id:022026 AF392631 clone LEA1 prokMSA_id:051071 AF422649 clone d040 prokMSA_id:039067 AF422678 clone d155 prokMSA_id:059398 AF428600 clone CRD99-22 prokMSA_id:069322 AF467369 alpha clone 1598 prokMSA_id:070468 AF467370 alpha clone 1594 prokMSA_id:080960 AY193094 clone PLTA10 2.28.1.8.5.5 RICKETTSIA_SUBGROUP 135 seqs 2.28.1.8.5.5.003 OTU 70 seqs prokMSA_id:005952 AB021128 Rickettsia sp. prokMSA_id:044963 AE008647 Rickettsia conorii Malish 7 section 79 of 114 of the complete genome prokMSA_id:005958 AF060705 Rickettsia honei str. RB. prokMSA_id:005955 AF097729 Rickettsia DaE100R str. DaE100R. prokMSA_id:026925 AF120024 Rickettsia sp. DnS28 strain DnS28 prokMSA_id:027672 AF120025 Rickettsia sp. DnS14 strain DnS14 prokMSA_id:045313 AF120026 Rickettsia sp. RpA4 strain RpA4 prokMSA_id:049155 AF141907 Rickettsia sp. IRS3 prokMSA_id:019942 AF141908 Rickettsia sp. IRS4 prokMSA_id:028211 AF178036 Rickettsia sp. BJ-90 prokMSA_id:037110 AF178037 Rickettsia heilongjiangii prokMSA_id:065330 AF394902 Rickettsia sp. DT1 prokMSA_id:065326 AF394903 Rickettsia sp. FLA1 prokMSA_id:055503 AF394904 Rickettsia sp. IP1 prokMSA_id:065325 AF394905 Rickettsia sp. IM1 prokMSA_id:065324 AF394906 Rickettsia sp. IO1 prokMSA_id:084326 AF503168 Candidatus Rickettsia tarasevichiae prokMSA_id:087951 AF510102 Rickettsia sp. Chad complete prokMSA_id:089017 AF541999 Rickettsia conorii strain Malish 7 prokMSA_id:065333 AY049981 Rickettsia sp. AT1 prokMSA_id:075477 AY158006 Rickettsia sp. JL-02 prokMSA_id:005975 D38628 Rickettsia sibirica ATCC VR151 . prokMSA_id:073835 D38628 Rickettsia sibirica strain ATCC VR151 prokMSA_id:005929 D84558 Rickettsia sp. prokMSA_id:005964 L28944 Rickettsia sp. str. ELB agent. prokMSA_id:005926 L36098 Rickettsia africae str. ESF-5; Z9-Hu . prokMSA_id:005943 L36099 Rickettsia akari str. MK Kaplan. prokMSA_id:005936 L36100 Rickettsia sp. str. A-167. prokMSA_id:005923 L36101 Rickettsia australis str. Phillips. prokMSA_id:005928 L36102 Rickettsia sp. str. Bar 29. prokMSA_id:005961 L36103 Rickettsia bellii str. 369L42-1. prokMSA_id:005941 L36104 Rickettsia canadensis str. 2678. prokMSA_id:005971 L36105 Rickettsia conorii str. Moroccan. prokMSA_id:005965 L36106 Rickettsia massiliae str. GS. prokMSA_id:005937 L36107 Rickettsia conorii str. Indian Tick Typhus rickettsia. prokMSA_id:005938 L36212 Rickettsia helvetica str. C9P9. prokMSA_id:005948 L36213 Rickettsia japonica str. YM. prokMSA_id:005946 L36214 Rickettsia massiliae str. Mtu1 . prokMSA_id:005973 L36215 Rickettsia montana ATCC VR-611 . prokMSA_id:005970 L36216 Rickettsia rhipicephali str. 3-7-6. prokMSA_id:005967 L36217 Rickettsia rickettsii str. R Bitterroot. prokMSA_id:005931 L36218 Rickettsia sibirica str. 246. prokMSA_id:005972 L36219 Rickettsia sp. str. HA-91. prokMSA_id:005957 L36220 Rickettsia sp. str. TT-118. prokMSA_id:005932 L36221 Rickettsia typhi str. Wilmington. prokMSA_id:005945 L36223 Rickettsia sp. str. ISTT CDC1. prokMSA_id:005934 L36224 Rickettsia slovaca str. 13-B. prokMSA_id:005976 L36673 Rickettsia parkeri str. Maculatum 20 . prokMSA_id:005924 M21789 Rickettsia prowazekii str. Breinl ATCC VR-142 alpha purple prokMSA_id:048125 NC_003103 Rickettsia conorii Malish 7 complete genome prokMSA_id:005922 U04163 Rickettsia sp. prokMSA_id:005940 U11012 Rickettsia amblyommii str. MO 85-1084. prokMSA_id:005950 U11014 Rickettsia bellii str. strains 369-C and G2D42. prokMSA_id:005935 U11016 Rickettsia montana str. Ohio 83-441. prokMSA_id:005944 U11019 Rickettsia rhipicephali. prokMSA_id:005954 U11021 Rickettsia rickettsii str. Sawtooth. prokMSA_id:005969 U12458 Rickettsia akari str. Hartford. prokMSA_id:005959 U12459 Rickettsia australis str. Phillips. prokMSA_id:005925 U12460 Rickettsia conorii str. IIT-586. prokMSA_id:005953 U12461 Rickettsia parkeri str. Maculatum 20 . prokMSA_id:005956 U12462 Rickettsia sibirica str. 246. prokMSA_id:005939 U12463 Rickettsia typhi str. Wilmington. prokMSA_id:005968 U15162 Rickettsia canadensis str. McKeil. prokMSA_id:005947 U17644 Rickettsia australis str. RHS. prokMSA_id:005963 U17645 Rickettsia honei str. JC. prokMSA_id:005927 U25042 Rickettsia sp. str. S. prokMSA_id:005949 U42084 Rickettsia sp. str. PAR. prokMSA_id:005933 U55820 Rickettsia peacockii str. Skalkaho . prokMSA_id:005930 U74757 Rickettsia aeschlimanni str. Mc16 . prokMSA_id:005962 U76910 Rickettsia sp. str. Puerto Rico. 2.28.1.8.5.5.004 OTU 2 seqs prokMSA_id:005951 AF069962 unnamed organism. prokMSA_id:005966 AF069963 unnamed organism. 2.28.1.8.5.5.005 OTU 1 seq prokMSA_id:005960 M20499 Rickettsia typhi str. Wilmington. 2.28.1.8.5.5.006 OTU 1 seq prokMSA_id:005942 AB015522 str. BD1-10. 2.28.1.8.5.5.007 OTU 5 seqs prokMSA_id:020287 AF422621 clone d001 prokMSA_id:041286 AF422629 clone d008R prokMSA_id:044243 AF422673 clone d125 prokMSA_id:045595 AF422674 clone d126 prokMSA_id:039940 AF422682 clone d159 2.28.1.8.5.5.008 OTU 1 seq prokMSA_id:026167 AF194375 alpha kpa92 2.28.1.8.5.5.009 OTU 1 seq prokMSA_id:035350 AF445655 alpha clone SM1B06 2.28.1.8.5.5.010 OTU 2 seqs prokMSA_id:052394 AB066351 Rickettsia endosymbiont of Torix tagoi prokMSA_id:039764 AB066352 Rickettsia endosymbiont of Hemicrepsis marginata 2.28.1.8.5.5.011 OTU 1 seq prokMSA_id:043432 AJ319724 Haplosporidium sp. endosymbiont isolate AbFoot 2.28.1.8.5.5.012 OTU 1 seq prokMSA_id:045652 AJ429500 Wolbachia pipientis 2.28.1.8.5.5.013 OTU 1 seq prokMSA_id:061741 AJ416171 clone Urk0-05 2.28.1.8.5.5.014 OTU 1 seq prokMSA_id:063333 AF523878 clone RCP2-17 2.28.1.8.5.5.015 OTU 1 seq prokMSA_id:066159 AF493952 Rickettsiales 'Montezuma' 2.28.1.8.5.5.016 OTU 1 seq prokMSA_id:077922 AB089084 alpha clone:Rs-B60 2.28.1.8.5.5.017 OTU 1 seq prokMSA_id:078131 AB089091 alpha clone:Rs-B62 2.28.1.8.5.5.018 OTU 1 seq prokMSA_id:078231 AY171383 clone s89 2.28.1.8.5.5.019 OTU 1 seq prokMSA_id:078393 AB089097 alpha clone:Rs-M62 2.28.1.8.5.5.020 OTU 2 seqs prokMSA_id:081215 AF497582 clone Hw191 prokMSA_id:082176 AF497583 clone Hw124 2.28.1.8.5.5.021 OTU 1 seq prokMSA_id:081801 AY218634 clone KD4-41 2.28.1.8.5.5.022 OTU 1 seq prokMSA_id:082997 AY254690 alpha SBR6alpha9 2.28.1.8.5.5.023 OTU 1 seq prokMSA_id:083340 AY226252 alpha clone BBBB-49 2.28.1.8.5.5.024 OTU 1 seq prokMSA_id:090271 AY327236 clone ZB21 2.28.1.8.5.5.025 OTU 1 seq prokMSA_id:091363 AY344373 clone K2-S-24 2.28.1.8.5.5.026 OTU 1 seq prokMSA_id:093807 AY364636 Rickettsia endosymbiont of Nuclearia pattersoni 2.28.1.8.5.5.999 poor quality 35 seqs prokMSA_id:020489 AF422623 clone d003 prokMSA_id:033880 AF422641 clone d031R prokMSA_id:033229 AF424274 alpha MERTZ_2CM_90 prokMSA_id:049966 AF428866 clone CR98-24-60 prokMSA_id:061234 AF432664 clone NOS7.154WL prokMSA_id:016691 AF446310 alpha FL10H03 prokMSA_id:025751 AF473961 alpha A190-7 prokMSA_id:071933 AF487650 Rickettsia sp. Bar29-like isolate 249 prokMSA_id:069136 AF487651 Rickettsia sp. Bar29-like isolate 573 prokMSA_id:066151 AF497629 Rickettsiales 'Montezuma' prokMSA_id:066149 AF504055 Rickettsiales 'Montezuma' prokMSA_id:066150 AF504056 Rickettsiales 'Montezuma' prokMSA_id:056369 AF504057 Rickettsiales 'Montezuma' prokMSA_id:069508 AF544891 alpha clone A191-2 prokMSA_id:069070 AF544897 alpha clone A191-8 prokMSA_id:074221 AF544900 alpha clone A191-11 prokMSA_id:073054 AF544907 alpha clone A191-18 prokMSA_id:074643 AF544908 alpha clone A191-19 prokMSA_id:071133 AJ292457 ZI-8 clone ZI-8 prokMSA_id:051066 AJ292460 ZI-7 clone ZI-7 prokMSA_id:063887 AJ493391 clone m7-6 prokMSA_id:025590 AY048818 Rickettsia sp. IrR/Munich prokMSA_id:079243 AY167034 Rickettsiales clone m43-2 prokMSA_id:090510 AY323133 clone A115-8 prokMSA_id:088064 AY323149 clone A133-32 prokMSA_id:090048 AY323150 clone A115-26t prokMSA_id:088271 AY323175 clone A114-1 prokMSA_id:088283 AY323176 alpha clone A114-7 prokMSA_id:089267 AY323177 alpha clone A114-2 prokMSA_id:088598 AY323183 alpha clone A134-65 prokMSA_id:089724 AY323186 alpha clone A134-41 prokMSA_id:089633 AY323189 clone A134-16 prokMSA_id:097972 AY394611 Rickettsia sp. clone W4-1 prokMSA_id:005974 M21293 Rickettsia rickettsii str. R ATCC VR-891 . prokMSA_id:041856 Y08783 R.moreli 2.28.1.8.5.6 ORIENTIA_SUBGROUP 22 seqs 2.28.1.8.5.6.001 OTU 17 seqs prokMSA_id:005982 AF062074 Orientia tsutsugamushi str. Litchfield. prokMSA_id:072689 D38622 Rickettsia tsutsugamushi strain Gilliam prokMSA_id:005987 D38622 Orientia tsutsugamushi str. Gilliam. prokMSA_id:005981 D38623 Orientia tsutsugamushi str. Karp. prokMSA_id:072798 D38623 Rickettsia tsutsugamushi strain Karp prokMSA_id:071790 D38624 Rickettsia tsutsugamushi strain Kato prokMSA_id:005979 D38624 Orientia tsutsugamushi str. Kato. prokMSA_id:072291 D38625 Rickettsia tsutsugamushi strain Kawasaki prokMSA_id:005977 D38625 Orientia tsutsugamushi str. Kawasaki. prokMSA_id:005984 D38626 Orientia tsutsugamushi str. Kuroki. prokMSA_id:073599 D38626 Rickettsia tsutsugamushi strain Kuroki prokMSA_id:072018 D38627 Rickettsia tsutsugamushi strain Shimokoshi prokMSA_id:005978 D38627 Orientia tsutsugamushi str. Shimokoshi. prokMSA_id:005985 L36222 Orientia tsutsugamushi str. Gilliam. prokMSA_id:005986 U17256 Orientia tsutsugamushi str. Gilliam. prokMSA_id:005983 U17257 Orientia tsutsugamushi str. Karp. prokMSA_id:005980 U17258 Orientia tsutsugamushi str. Kato. 2.28.1.8.5.6.002 OTU 1 seq prokMSA_id:066518 AY100563 clone cvf65062 2.28.1.8.5.6.003 OTU 1 seq prokMSA_id:078271 AY171311 clone s6 2.28.1.8.5.6.999 poor quality 3 seqs prokMSA_id:025297 AJ298359 marine alpha BY-70 prokMSA_id:073820 AJ298360 marine alpha AY-52 prokMSA_id:061756 AJ416189 clone Sta1-29 2.28.1.8.5.7 OCEANIC_ENVIRONMENTAL_CLONES_SUBGROUP 8 seqs 2.28.1.8.5.7.999 poor quality 8 seqs prokMSA_id:005995 L11939 Sargasso Sea 10m depth clone BDA1-15. prokMSA_id:005991 L11940 Sargasso Sea 10m depth clone BDA1-17. prokMSA_id:005992 L11941 Sargasso Sea 10m depth clone BDA1-20. prokMSA_id:005994 L11942 Sargasso Sea 10m depth clone BDA1-25. prokMSA_id:005989 L11943 Sargasso Sea 10m depth clone BDA1-27. prokMSA_id:005993 L11951 Pacific Ocean station 16 100m depth clone prokMSA_id:005990 L11982 Pacific Ocean station 29 100m depth clone prokMSA_id:005988 L11987 Pacific Ocean station 49 500m depth clone 2.28.1.8.5.8 EHR.RISTICII_SUBGROUP 64 seqs 2.28.1.8.5.8.001 OTU 16 seqs prokMSA_id:006003 AF036649 Ehrlichia risticii. prokMSA_id:005998 AF036653 Ehrlichia risticii. prokMSA_id:006004 AF036654 Ehrlichia risticii. prokMSA_id:006005 AF037210 Ehrlichia risticii str. SHSN-1. prokMSA_id:006006 AF037211 Ehrlichia risticii str. SHSN-2. prokMSA_id:033480 AF206300 Ehrlichia risticii from Caddisfly larvae prokMSA_id:067336 AF380257 Ehrlichia risticii from horse 1 prokMSA_id:067337 AF380258 Ehrlichia risticii from horse 2 prokMSA_id:024883 AY005439 Ehrlichia risticii isolate S22 prokMSA_id:031250 AY005441 Ehrlichia risticii isolate S6 prokMSA_id:005996 M21290 Ehrlichia risticii str. Illinois ATCC VR-986 alpha purple prokMSA_id:006012 M73219 Ehrlichia sennetsu str. Miyayama. prokMSA_id:006011 M73225 Ehrlichia sennetsu str. 11908. prokMSA_id:006008 NONE Ehrlichia risticii str. Ohio isolate 081. prokMSA_id:006001 NONE Ehrlichia risticii str. Kentucky isolate. prokMSA_id:006007 U34280 Ehrlichia sp. 2.28.1.8.5.8.002 OTU 2 seqs prokMSA_id:006002 AF069062 str. WSA. prokMSA_id:006010 AF133090 Agent of withering syndrome in abalone 2.28.1.8.5.8.003 OTU 1 seq prokMSA_id:017901 AF206298 Ehrlichia sp. 'trout isolate' 2.28.1.8.5.8.999 poor quality 45 seqs prokMSA_id:019654 AF036648 Ehrlichia risticii prokMSA_id:024643 AF036650 Ehrlichia risticii prokMSA_id:031612 AF036651 Ehrlichia risticii prokMSA_id:005997 AF036652 Ehrlichia risticii. prokMSA_id:006009 AF036655 Ehrlichia risticii. prokMSA_id:047906 AF036656 Ehrlichia risticii prokMSA_id:005999 AF036657 Ehrlichia risticii. prokMSA_id:019805 AF036658 Ehrlichia risticii prokMSA_id:006000 AF036659 Ehrlichia risticii. prokMSA_id:024300 AF170727 Ehrlichia sp. CATE prokMSA_id:041799 AF170729 Ehrlichia sp. CAPL prokMSA_id:018052 AF179351 Ehrlichia risticii strain Shasta prokMSA_id:034377 AF193398 Ehrlichia risticii strain ATCCVR986 prokMSA_id:049747 AF193399 Ehrlichia risticii isolate CS2128 prokMSA_id:043006 AF193400 Ehrlichia risticii isolate Horse 1 prokMSA_id:044722 AF193401 Ehrlichia risticii isolate Horse 2 prokMSA_id:025894 AF193402 Ehrlichia risticii isolate Horse 3 prokMSA_id:048224 AF193403 Ehrlichia risticii isolate Horse 4 prokMSA_id:037704 AF193404 Ehrlichia risticii isolate Horse 5 prokMSA_id:022217 AF193405 Ehrlichia risticii isolate Horse 6 prokMSA_id:034103 AF193406 Ehrlichia risticii isolate Mouse 14 prokMSA_id:037001 AF193407 Ehrlichia risticii isolate Mouse 2 prokMSA_id:042947 AF193408 Ehrlichia risticii isolate Mouse 3 prokMSA_id:043838 AF193409 Ehrlichia risticii isolate PC1 prokMSA_id:038442 AF193410 Ehrlichia risticii isolate PC2 prokMSA_id:040599 AF193411 Ehrlichia risticii isolate CS2121 prokMSA_id:044813 AF194081 Ehrlichia risticii prokMSA_id:041481 AF194082 Ehrlichia risticii prokMSA_id:042493 AF206301 Ehrlichia risticii from Stonefly nymph prokMSA_id:027964 AF206303 Ehrlichia risticii from Caddisfly larvae prokMSA_id:045784 AF295566 Ehrlichia risticii from Stonefly nymph prokMSA_id:050825 AF295567 Ehrlichia risticii from Caddisfly adult prokMSA_id:046004 AF295568 Ehrlichia risticii from Caddisfly adult prokMSA_id:018943 AF295569 Ehrlichia risticii from Damselfly adult prokMSA_id:029109 AF295570 Ehrlichia risticii from Damselfly adult prokMSA_id:028932 AF295571 Ehrlichia risticii from Damselfly nymph prokMSA_id:074657 AF295572 Ehrlichia risticii from Mayfly nymph prokMSA_id:025181 AF295573 Ehrlichia risticii from Mayfly nymph prokMSA_id:067334 AF380259 Ehrlichia risticii from horse 1 prokMSA_id:067333 AF380260 Ehrlichia risticii from horse 2 prokMSA_id:067330 AF380261 Ehrlichia risticii from mouse prokMSA_id:067331 AF380262 Ehrlichia risticii from caddisfly prokMSA_id:067332 AF380263 Ehrlichia risticii from mayfly prokMSA_id:067325 AF380264 Ehrlichia risticii from caddisfly prokMSA_id:006013 U12457 Neorickettsia helminthoeca. 2.28.1.8.5.9 EHRLICHIA_SUBGROUP 231 seqs 2.28.1.8.5.9.1 EHR.CANIS_SUBGROUP 60 seqs 2.28.1.8.5.9.1.007 OTU 46 seqs prokMSA_id:006030 AB013008 Ehrlichia muris str. I268. prokMSA_id:006031 AB013009 Ehrlichia muris str. NA1. prokMSA_id:036711 AB024928 Ehrlichia sp. HF565 prokMSA_id:040434 AB028319 Ehrlichia sp. Anan prokMSA_id:006034 AF069758 Cowdria ruminantium str. Mara 87/7. prokMSA_id:006018 AF147752 Ehrlichia chaffeensis complete prokMSA_id:006020 AF156785 Ehrlichia canis str. Gdt3. prokMSA_id:006021 AF156786 Ehrlichia canis str. Gxht67. prokMSA_id:006022 AF162860 Ehrlichia canis str. Gzh982. prokMSA_id:030672 AF260591 Ehrlichia sp. HI-2000 prokMSA_id:024968 AF311967 Ehrlichia sp. ERm58 small subunit prokMSA_id:070749 AF311968 Ehrlichia sp. EHt224 small subunit prokMSA_id:016712 AF318021 Cowdria ruminantium Porto Henrique prokMSA_id:050091 AF318022 Cowdria ruminantium Bela Vista prokMSA_id:038150 AF318946 Ehrlichia ovina prokMSA_id:048642 AF325175 Cowdria sp. 'South African canine' small subunit prokMSA_id:032463 AF373612 Ehrlichia canis isolate VHE prokMSA_id:038268 AF373613 Ehrlichia canis isolate VDE prokMSA_id:052566 AF373615 Ehrlichia canis isolate VTE prokMSA_id:041424 AF414399 Ehrlichia sp. Tibet prokMSA_id:019195 AF416764 Ehrlichia chaffeensis strain Arkansas ; and succinate dehydrogenase subunit C sdhC complete cds prokMSA_id:081829 AF497577 Ehrlichia sp. EHh317 prokMSA_id:081299 AF497578 Ehrlichia sp. EHh324 prokMSA_id:082252 AF497581 Ehrlichia sp. EBm52 prokMSA_id:094201 AF536827 Ehrlichia canis strain Kagoshima 1 prokMSA_id:096420 AY394465 Ehrlichia canis prokMSA_id:006019 M73221 Ehrlichia canis str. Oklahoma. prokMSA_id:006032 M73222 Ehrlichia chaffeensis str. Arkansas . prokMSA_id:006033 M73226 Ehrlichia canis str. Florida. prokMSA_id:006026 M73227 Ehrlichia ewingii str. Stillwater . prokMSA_id:006035 U03776 Cowdria ruminantium str. Omatjenne. prokMSA_id:072979 U03776 Cowdria ruminantium prokMSA_id:006036 U03777 Cowdria ruminantium str. Ball3. prokMSA_id:074141 U03777 Cowdria ruminantium prokMSA_id:006028 U15527 Ehrlichia muris str. AS145 ATCC VR-1411. prokMSA_id:006014 U23503 Ehrlichia chaffeensis str. 91HE17. prokMSA_id:006038 U26740 Ehrlichia canis str. 611. prokMSA_id:006023 U54805 Ehrlichia sp. str. Germishuys. prokMSA_id:006015 U60476 Ehrlichia chaffeensis str. Sapulpa. prokMSA_id:006016 U86664 Ehrlichia chaffeensis str. Jax. prokMSA_id:006017 U86665 Ehrlichia chaffeensis str. St. Vincent. prokMSA_id:072320 U96435 Ehrlichia ewingii strain 95E7-MK prokMSA_id:006027 U96436 Ehrlichia ewingii str. 95E9-TS. prokMSA_id:027178 U96437 Ehrlichia canis strain 95E10-26039 prokMSA_id:006024 X61659 Cowdria ruminantium str. Crystal Springs Zimbabwe isolate. prokMSA_id:006037 X62432 Cowdria ruminantium str. d from Senegal stock. 2.28.1.8.5.9.1.008 OTU 4 seqs prokMSA_id:063884 AB074460 Ehrlichia sp. IS58 prokMSA_id:063883 AB084582 Ehrlichia-like sp. TK4456 prokMSA_id:006025 AF104680 unnamed organism. prokMSA_id:059553 AY135531 Ehrlichia sp. 'Rattus strain' 2.28.1.8.5.9.1.999 poor quality 10 seqs prokMSA_id:050186 AF305074 Ehrlichia chaffeensis prokMSA_id:038963 AF308455 Ehrlichia canis prokMSA_id:049646 AF312907 Ehrlichia muris prokMSA_id:030260 AF373614 Ehrlichia canis isolate VTE prokMSA_id:055742 AF497628 Ehrlichia ewingii strain HH601-WTD76 prokMSA_id:064293 AY093439 Ehrlichia ewingii strain HH588-2 prokMSA_id:064292 AY093440 Ehrlichia ewingii strain HH591-2 prokMSA_id:064289 AY093441 Ehrlichia ewingii strain HH601-WTD81 prokMSA_id:092111 AY350424 Ehrlichia chaffeensis prokMSA_id:006029 Z77421 str. 1-420 C55. 2.28.1.8.5.9.2 EHR.PHAGOCYTOPHILA_SUBGROUP 171 seqs 2.28.1.8.5.9.2.002 OTU 1 seq prokMSA_id:006052 AB015538 str. BD2-8. 2.28.1.8.5.9.2.008 OTU 17 seqs prokMSA_id:025427 AF283007 Anaplasma centrale prokMSA_id:018751 AF309865 Anaplasma ovis strain Idaho prokMSA_id:028040 AF309866 Anaplasma marginale strain Virginia prokMSA_id:023009 AF309867 Anaplasma marginale strain Florida prokMSA_id:044706 AF309868 Anaplasma marginale strain South Idaho prokMSA_id:029417 AF309869 Anaplasma centrale strain Israel vaccine prokMSA_id:030827 AF311303 Anaplasma marginale prokMSA_id:028557 AF318944 Anaplasma centrale prokMSA_id:050430 AF318945 Anaplasma ovis prokMSA_id:079444 AF414868 Anaplasma centrale strain vaccine from Australia prokMSA_id:079180 AF414871 Anaplasma marginale from South Africa from black wildebeest prokMSA_id:079361 AF414872 Anaplasma marginale isolate Eland from South Africa prokMSA_id:079581 AF414873 Anaplasma marginale strain Veld from South Africa prokMSA_id:079178 AF414874 Anaplasma marginale strain F12 from Australia prokMSA_id:079130 AF414876 Anaplasma marginale isolate tailed from Israel prokMSA_id:058998 AY048816 Anaplasma marginale prokMSA_id:006039 M60313 Anaplasma marginale. 2.28.1.8.5.9.2.009 OTU 77 seqs prokMSA_id:074586 AF012528 Ehrlichia sp. EHR62 prokMSA_id:006063 AF036645 Ehrlichia equi str. ALICE. prokMSA_id:006064 AF036646 Ehrlichia equi str. Atempo. prokMSA_id:006065 AF036647 Ehrlichia equi str. Meretricious. prokMSA_id:006051 AF057707 Ehrlichia sp. prokMSA_id:006053 AF084907 Ehrlichia sp. prokMSA_id:006066 AF093788 Ehrlichia 'HGE agent' str. CAHU-HGE1. prokMSA_id:006067 AF093789 Ehrlichia 'HGE agent' str. CAHU-HGE2. prokMSA_id:006042 AF156784 Ehrlichia platys str. Gzh981. prokMSA_id:006068 AF170728 Ehrlichia CASC str. CASC. prokMSA_id:006069 AF172164 Ehrlichia equi str. CASOLJ. prokMSA_id:006070 AF172165 Ehrlichia equi str. CAMEBS. prokMSA_id:006071 AF172166 Ehrlichia equi str. CASITL. prokMSA_id:006072 AF172167 Ehrlichia equi str. CAMAWI. prokMSA_id:006050 AF189153 Ehrlichia 'HGE agent' str. PL59. prokMSA_id:027409 AF205140 Ehrlichia sp. 'HGE agent' prokMSA_id:020458 AF227954 Ehrlichia phagocytophila prokMSA_id:049397 AF241532 Ehrlichia sp. 'LGE agent' prokMSA_id:042949 AF286699 Ehrlichia platys prokMSA_id:018302 AF287153 Ehrlichia platys prokMSA_id:052260 AF288135 Ehrlichia sp. Okinawa-RS3 prokMSA_id:043589 AF288136 Ehrlichia sp. Okinawa-RS21 prokMSA_id:025784 AF294789 Ehrlichia bovis complete prokMSA_id:024415 AF303467 Anaplasma platys prokMSA_id:022200 AF311343 Ehrlichia sp. Long Point prokMSA_id:033737 AF318023 Ehrlichia sp. Bom Pastor prokMSA_id:026587 AF384212 Ehrlichia phagocytophila #56 prokMSA_id:047615 AF384213 Ehrlichia phagocytophila #58 prokMSA_id:051739 AF384214 Ehrlichia phagocytophila #99 prokMSA_id:025787 AF469005 Ehrlichia sp. RND-1 prokMSA_id:074873 AF470698 Anaplasma bovis isolate AB-KGHL prokMSA_id:054953 AF470699 Anaplasma phagocytophila isolate AP-CBHL prokMSA_id:032965 AF470700 Anaplasma phagocytophila isolate AP-JJHL prokMSA_id:038686 AF470701 Anaplasma phagocytophila isolate AP-KGIP prokMSA_id:085063 AF478131 Ehrlichia platys strain RDC prokMSA_id:056421 AF481850 Anaplasma phagocytophilum isolate 470 prokMSA_id:062262 AF481851 Anaplasma phagocytophilum isolate 471 prokMSA_id:062263 AF481852 Anaplasma phagocytophilum isolate 474 prokMSA_id:062257 AF481853 Anaplasma phagocytophilum isolate 707 prokMSA_id:062256 AF481854 Anaplasma phagocytophilum isolate 811 prokMSA_id:062255 AF481855 Anaplasma phagocytophilum isolate 832 prokMSA_id:068612 AF486636 Anaplasma phagocytophila prokMSA_id:081457 AF497576 Anaplasma sp. AnDa465 prokMSA_id:081085 AF497579 Anaplasma sp. AnHl446 prokMSA_id:081105 AF497580 Anaplasma sp. AnAj360 prokMSA_id:093598 AF536828 Anaplasma platys strain Okinawa 1 prokMSA_id:006059 AJ242783 Ehrlichia sp. prokMSA_id:006073 AJ242784 Ehrlichia sp. prokMSA_id:006060 AJ242785 Ehrlichia sp. prokMSA_id:031354 AJ312939 Ehrlichia sp. strain Jena 22 prokMSA_id:021574 AJ312940 Ehrlichia sp. strain Jena 72 prokMSA_id:036925 AJ312941 Ehrlichia sp. strain Jena 14 prokMSA_id:021313 AJ312942 Ehrlichia sp. strain Jena 84 prokMSA_id:022551 AJ313511 Ehrlichia sp. Jena 238 isolate Jena 238 prokMSA_id:036268 AJ313512 Ehrlichia sp. Jena 16 isolate Jena 16 prokMSA_id:047284 AJ313513 Ehrlichia sp. Jena 8 isolate Jena 8 prokMSA_id:039876 AY055469 Anaplasma phagocytophilum complete ; and succinate dehydrogenase subunit C sdhC complete cds prokMSA_id:057516 AY077619 Anaplasma platys isolate Okinawa prokMSA_id:068787 AY079425 Ehrlichia sp. 'Chinese tick II' prokMSA_id:056628 AY082656 Anaplasma phagocytophila isolate BV-1 prokMSA_id:073927 AY094352 Anaplasma phagocytophilum prokMSA_id:069345 AY094353 Anaplasma phagocytophilum prokMSA_id:091303 AY144729 Anaplasma bovis prokMSA_id:006061 M73220 Ehrlichia phagocytophila str. OS Old Sourhope. prokMSA_id:006074 M73223 Ehrlichia equi. prokMSA_id:006062 M73224 Ehrlichia phagocytophila str. FG feral goat. prokMSA_id:006041 M82801 Ehrlichia platys. prokMSA_id:006049 U02521 Ehrlichia sp. prokMSA_id:074038 U03775 Ehrlichia bovis prokMSA_id:006040 U03775 Ehrlichia bovis. prokMSA_id:006054 U10873 Ehrlichia sp. str. rosa. prokMSA_id:006046 U27104 Ehrlichia sp. str. Georgia white-tailed deer #4 from Whitehall prokMSA_id:006047 U52514 unnamed organism. prokMSA_id:006048 U54806 Ehrlichia sp. str. Omatjenne. prokMSA_id:006055 U72878 Ehrlichia sp. str. PL1559. prokMSA_id:034548 U72879 Ehrlichia sp. strain PL505 prokMSA_id:006058 U77389 Ehrlichia sp. str. Swiss horse 1. 2.28.1.8.5.9.2.010 OTU 1 seq prokMSA_id:056843 AY125087 Aegyptianella pullorum 2.28.1.8.5.9.2.999 poor quality 75 seqs prokMSA_id:040134 AF136712 Ehrlichia sp. 'Frankonia 2' prokMSA_id:051015 AF136713 Ehrlichia sp. 'Frankonia 1' prokMSA_id:018456 AF136714 Ehrlichia sp. 'Baden' prokMSA_id:041152 AF287154 Ehrlichia platys prokMSA_id:041412 AF287155 Ehrlichia platys prokMSA_id:017878 AF336220 Ehrlichia phagocytophila prokMSA_id:055318 AF365663 clone BM89DS6BbD6 prokMSA_id:068080 AF365664 clone BM89DS6BbD7 prokMSA_id:067948 AF365824 clone BT60PA10BC12 prokMSA_id:017464 AF482761 Ehrlichia equi prokMSA_id:061802 AF530575 Anaplasma phagocytophilum prokMSA_id:038517 AY029158 Ehrlichia platys prokMSA_id:055008 AY035312 Ehrlichia phagocytophila prokMSA_id:058539 AY040850 Ehrlichia platys clone 6 prokMSA_id:058562 AY040851 Ehrlichia platys clone 10 prokMSA_id:058561 AY040852 Ehrlichia platys clone 12 prokMSA_id:058566 AY040853 Ehrlichia platys clone 22 prokMSA_id:082830 AY149634 Anaplasma phagocytophilum isolate 39 prokMSA_id:084360 AY149635 Anaplasma phagocytophilum isolate 38 prokMSA_id:084835 AY149636 Anaplasma phagocytophilum isolate 36 prokMSA_id:082836 AY149637 Anaplasma phagocytophilum isolate 37 prokMSA_id:079511 AY176586 Anaplasma phagocytophilum strain Aberfieldy prokMSA_id:079384 AY176587 Anaplasma phagocytophilum strain Cairn prokMSA_id:079143 AY176588 Anaplasma phagocytophilum strain Feral Goat prokMSA_id:079503 AY176589 Anaplasma phagocytophilum strain Harris prokMSA_id:079324 AY176590 Anaplasma phagocytophilum strain Lephimore prokMSA_id:079566 AY176591 Anaplasma phagocytophilum strain Old Sourhope prokMSA_id:079583 AY180920 Anaplasma sp. wz57 prokMSA_id:081009 AY193887 Anaplasma phagocytophilum strain AP-Variant 1 prokMSA_id:082110 AY208945 Anaplasma sp. Fawn 76 prokMSA_id:087274 AY281771 Anaplasma phagocytophilum isolate D13 prokMSA_id:087107 AY281772 Anaplasma phagocytophilum isolate D12 prokMSA_id:087878 AY281773 Anaplasma phagocytophilum isolate D16 prokMSA_id:086850 AY281774 Anaplasma phagocytophilum isolate D17 prokMSA_id:087940 AY281775 Anaplasma phagocytophilum isolate D20 prokMSA_id:087170 AY281776 Anaplasma phagocytophilum isolate D21 prokMSA_id:087969 AY281777 Anaplasma phagocytophilum isolate D22a prokMSA_id:087838 AY281778 Anaplasma phagocytophilum isolate G24 prokMSA_id:087930 AY281779 Anaplasma phagocytophilum isolate G26 prokMSA_id:087803 AY281780 Anaplasma phagocytophilum isolate G34 prokMSA_id:087100 AY281781 Anaplasma phagocytophilum isolate G55 prokMSA_id:087834 AY281782 Anaplasma phagocytophilum isolate I20 prokMSA_id:086858 AY281783 Anaplasma phagocytophilum isolate I63 prokMSA_id:086770 AY281784 Anaplasma phagocytophilum isolate I68 prokMSA_id:087463 AY281785 Anaplasma phagocytophilum isolate I80 prokMSA_id:087783 AY281786 Anaplasma phagocytophilum isolate I94 prokMSA_id:087507 AY281787 Anaplasma phagocytophilum isolate I121 prokMSA_id:088019 AY281788 Anaplasma phagocytophilum isolate I145 prokMSA_id:087953 AY281789 Anaplasma phagocytophilum isolate I149 prokMSA_id:087961 AY281790 Anaplasma phagocytophilum isolate I158 prokMSA_id:087818 AY281791 Anaplasma phagocytophilum isolate I200 prokMSA_id:087914 AY281792 Anaplasma phagocytophilum isolate K71 prokMSA_id:087331 AY281793 Anaplasma phagocytophilum isolate K84 prokMSA_id:086917 AY281794 Anaplasma phagocytophilum isolate P80 prokMSA_id:087115 AY281795 Anaplasma phagocytophilum isolate S16 prokMSA_id:088023 AY281796 Anaplasma phagocytophilum isolate W34 prokMSA_id:087843 AY281797 Anaplasma phagocytophilum isolate W37 prokMSA_id:087742 AY281798 Anaplasma phagocytophilum isolate W140 prokMSA_id:088005 AY281799 Anaplasma phagocytophilum isolate W229 prokMSA_id:087620 AY281800 Anaplasma phagocytophilum isolate W98 prokMSA_id:087176 AY281801 Anaplasma phagocytophilum isolate W63 prokMSA_id:087847 AY281802 Anaplasma phagocytophilum isolate W271 prokMSA_id:087085 AY281803 Anaplasma phagocytophilum isolate W284 prokMSA_id:086947 AY281804 Anaplasma phagocytophilum isolate W298 prokMSA_id:087079 AY281805 Anaplasma phagocytophilum isolate X7 prokMSA_id:087795 AY281806 Anaplasma phagocytophilum isolate X17 prokMSA_id:086711 AY281807 Anaplasma phagocytophilum isolate N6 prokMSA_id:087433 AY281808 Anaplasma phagocytophilum isolate J1 prokMSA_id:086957 AY281809 Anaplasma phagocytophilum isolate SG3 prokMSA_id:097723 AY394612 Ehrlichia sp. clone N10-21 prokMSA_id:006056 U23038 Ehrlichia 'HGE agent' NCH 1. prokMSA_id:006057 U23039 Ehrlichia 'HGE agent' NCH 1/530-N8. prokMSA_id:006043 U27101 Ehrlichia sp. str. Oklahoma white-tailed deer isolate #3 collected prokMSA_id:006044 U27102 Ehrlichia sp. str. Oklahoma white-tailed deer isolate #1 collected prokMSA_id:006045 U27103 Ehrlichia sp. str. Georgia white-tailed deer #2 from Whitehall 2.28.1.8.5.10 WOLBACHIA_SUBGROUP 200 seqs 2.28.1.8.5.10.006 OTU 10 seqs prokMSA_id:006133 AF069069 unnamed organism. prokMSA_id:006132 AF088187 unnamed organism. prokMSA_id:020921 AF172401 Wolbachia endosymbiont of Onchocerca ochengi prokMSA_id:043030 AF304445 Wolbachia sp. Okinawa-RS32 prokMSA_id:094098 AF537217 Wolbachia sp. 'Okinawa 2' prokMSA_id:006134 AJ010276 Wolbachia sp. prokMSA_id:019317 AJ276498 Wolbachia endosymbiont of Onchocerca gutturosa prokMSA_id:023966 AJ276499 Wolbachia endosymbiont of Onchocerca gibsoni prokMSA_id:046057 AJ315150 Wolbachia endosymbiont of Onchocerca lupi prokMSA_id:073265 Z49261 Wolbachia endosymbiont of Dirofilaria immitis 2.28.1.8.5.10.013 OTU 1 seq prokMSA_id:006117 L02886 symbiont of Trichogramma deion. 2.28.1.8.5.10.018 OTU 1 seq prokMSA_id:006079 M85268 endosymbiont of Sitophilus oryzae. 2.28.1.8.5.10.019 OTU 1 seq prokMSA_id:023566 AJ276500 Wolbachia endosymbiont of Dirofilaria repens 2.28.1.8.5.10.020 OTU 1 seq prokMSA_id:035202 AF306556 Wolbachia endosymbiont of Orseolia oryzae 2.28.1.8.5.10.021 OTU 1 seq prokMSA_id:063330 AF523882 clone RCP1-24 2.28.1.8.5.10.022 OTU 1 seq prokMSA_id:083890 AF487892 Wolbachia endosymbiont of Dirofilaria immitis strain DAX 2.28.1.8.5.10.023 OTU 1 seq prokMSA_id:088836 AF491887 Wolbachia endosymbiont 3 of Acromyrmex octospinosus 2.28.1.8.5.10.024 OTU 1 seq prokMSA_id:089135 AF491888 Wolbachia endosymbiont 4 of Acromyrmex octospinosus 2.28.1.8.5.10.026 OTU 143 seqs prokMSA_id:006129 AB025965 Wolbachia sp. prokMSA_id:040943 AB038370 Wolbachia endosymbiont of Diaphorina citri prokMSA_id:036215 AB039036 Wolbachia sp. Wstri prokMSA_id:047460 AB039037 Wolbachia sp. wFur prokMSA_id:075327 AB052745 Wolbachia endosymbiont of Hypolimnas bolina bolina prokMSA_id:085569 AB073729 Wolbachia endosymbiont of Hishimonoides sellatiformis 1 prokMSA_id:086142 AB073730 Wolbachia endosymbiont of Hishimonoides sellatiformis 2 prokMSA_id:085576 AB073731 Wolbachia endosymbiont of Hishimonus sellatus 1 prokMSA_id:085581 AB073732 Wolbachia endosymbiont of Hishimonus sellatus 2 prokMSA_id:083307 AB085178 Wolbachia endosymbiont of Hypolimnas bolina jacintha prokMSA_id:086281 AB085179 Wolbachia endosymbiont of Hypolimnas bolina philippensis prokMSA_id:006093 AF035160 Wolbachia sp. prokMSA_id:006125 AF051145 unnamed organism. prokMSA_id:023143 AF062592 Wolbachia sp. 'Trichogramma bourarachae' prokMSA_id:006107 AF069068 unnamed organism. prokMSA_id:006122 AF093510 unnamed organism. prokMSA_id:027812 AF093511 Wolbachia endosymbiont of Brugia pahangi prokMSA_id:028825 AF179630 Wolbachia pipientis prokMSA_id:034685 AF220604 Wolbachia sp. prokMSA_id:052332 AF232234 Wolbachia endosymbiont of Nephila clavata prokMSA_id:030643 AF312372 Wolbachia pipientis prokMSA_id:018457 AF390864 Wolbachia pipientis strain wMa prokMSA_id:036393 AF390865 Wolbachia pipientis strain wAu prokMSA_id:037290 AF397408 Wolbachia endosymbiont of Aedes albopictus prokMSA_id:041004 AF397409 Wolbachia endosymbiont of Culex quinquefasciatus NCCS prokMSA_id:033897 AF468032 Wolbachia pipientis strain wHa prokMSA_id:052895 AF468033 Wolbachia pipientis strain wSn prokMSA_id:025650 AF468034 Wolbachia pipientis strain wNo prokMSA_id:066556 AF501664 Wolbachia pipientis prokMSA_id:046556 AJ001601 Wolbachia sp. from A. aquaticus patial prokMSA_id:023831 AJ001602 Wolbachia sp. from C. convexus prokMSA_id:037712 AJ001603 Wolbachia sp. from H. brevicornis prokMSA_id:034528 AJ001604 Wolbachia sp. from H. danicus prokMSA_id:024081 AJ001605 Wolbachia sp. from L. oceanica prokMSA_id:040640 AJ001606 Wolbachia sp. from O. asellus prokMSA_id:020704 AJ001607 Wolbachia sp. from P. muscorum prokMSA_id:027675 AJ001608 Wolbachia sp. from P. scaber prokMSA_id:017174 AJ001609 Wolbachia sp. from P. spinicornis prokMSA_id:036953 AJ001610 Wolbachia sp. from S. hookeri prokMSA_id:020689 AJ001611 Wolbachia sp. from S. rugicauda prokMSA_id:006124 AJ010275 Wolbachia sp. prokMSA_id:035741 AJ133196 Wolbachia sp. from Porcellionides pruinosus isolated from France:Reunion Island Southern Africa prokMSA_id:016658 AJ223238 Wolbachia sp. from A. vulgare prokMSA_id:026520 AJ223239 Wolbachia sp. from A. nasatum prokMSA_id:018397 AJ223240 Wolbachia sp. from A. album prokMSA_id:034628 AJ223241 Wolbachia sp. from C. elongata prokMSA_id:041404 AJ223242 Wolbachia sp. from P. pruinosus isolated from France:Celles sur Belle and Poitiers prokMSA_id:050758 AJ279034 Wolbachia endosymbiont of Mansonella ozzardi prokMSA_id:051738 AJ292347 Wolbachia endosymbiont of Microcerotermes sp. prokMSA_id:022477 AJ306307 Wolbachia pipientis strain ps1/dsz prokMSA_id:027461 AJ306308 Wolbachia pipientis strain hr1/dsz prokMSA_id:045349 AJ306309 Wolbachia pipientis strain trb1/dsz prokMSA_id:051305 AJ306310 Wolbachia pipientis strain trk1/dsz prokMSA_id:027843 AJ306311 Wolbachia pipientis strain av1/dsz prokMSA_id:035963 AJ306312 Wolbachia pipientis strain cc1/tb prokMSA_id:046827 AJ306313 Wolbachia pipientis strain pa1/tb prokMSA_id:045566 AJ306314 Wolbachia pipientis strain pd1/tb prokMSA_id:048347 AJ306315 Wolbachia pipientis strain trb1/tb prokMSA_id:072880 AJ422184 Wolbachia endosymbiont of Mesaphorura macrochaeta prokMSA_id:077810 AJ509026 Wolbachia endosymbiont of Paratullbergia callipygos prokMSA_id:089362 AJ575104 Wolbachia endosymbiont of Mesaphorura italica strain wIta prokMSA_id:041221 AY007547 Wolbachia sp. Dlem16SWol prokMSA_id:018468 AY007548 Wolbachia sp. Ablan16SWol prokMSA_id:028156 AY007549 Wolbachia sp. Avit16SWol prokMSA_id:052243 AY007550 Wolbachia sp. Dcris16SWol prokMSA_id:030977 AY007551 Wolbachia sp. WCR16SWol prokMSA_id:083838 AY091456 Wolbachia endosymbiont of Oeciacus vicarius prokMSA_id:083315 AY227740 Wolbachia sp. wCer1 prokMSA_id:082668 AY227741 Wolbachia sp. wCer2 prokMSA_id:084530 AY227742 Wolbachia sp. wAu prokMSA_id:087561 AY278355 Wolbachia endosymbiont of Mansonella perstans isolate M02-052N prokMSA_id:091131 AY335917 Wolbachia endosymbiont of Jellisonia sp. Honduras prokMSA_id:091347 AY335918 Wolbachia endosymbiont of Myodopsylla gentilis prokMSA_id:091954 AY335919 Wolbachia endosymbiont of Echidnophaga gallinacea prokMSA_id:091164 AY335920 Wolbachia endosymbiont of Sphinctopsylla area prokMSA_id:091860 AY335921 Wolbachia endosymbiont of Geusibia ashcrafti prokMSA_id:091084 AY335922 Wolbachia endosymbiont of Jellisonia sp. Mexico prokMSA_id:091396 AY335923 Wolbachia endosymbiont of Ctenocephalides felis prokMSA_id:091726 AY335924 Wolbachia endosymbiont of Orchopeas leucopus prokMSA_id:091859 AY335925 Wolbachia endosymbiont of Oropsylla hirsuta prokMSA_id:091796 AY335926 Wolbachia endosymbiont of Pulirritans sp. prokMSA_id:091789 AY335927 Wolbachia endosymbiont of Craneopsylla minerva wolffheuglia prokMSA_id:091638 AY335928 Wolbachia endosymbiont of Peromyscopsylla selensis prokMSA_id:091667 AY335929 Wolbachia endosymbiont of Adoratopsylla intermedia intermedia prokMSA_id:091050 AY335930 Wolbachia endosymbiont of Polygenis pradoi prokMSA_id:091030 AY335931 Wolbachia endosymbiont of Ectinorus alejoi prokMSA_id:091297 AY335932 Wolbachia endosymbiont of Phtiropsylla agenoris prokMSA_id:091822 AY335933 Wolbachia endosymbiont of Plocopsylla achillea prokMSA_id:091968 AY335934 Wolbachia endosymbiont of Pulsimulans sp. prokMSA_id:091565 AY335935 Wolbachia endosymbiont of Xenopsylla cheopis 1 prokMSA_id:091323 AY335936 Wolbachia endosymbiont of Xenopsylla cheopis 2 prokMSA_id:006082 L02882 symbiont of Muscifidurax uniraptor. prokMSA_id:006105 L02884 symbiont of Trichogramma deion. prokMSA_id:006142 L02887 symbiont of Trichogramma deion. prokMSA_id:006104 L02888 symbiont of Trichogramma deion. prokMSA_id:006090 M84686 symbiont of incompatibility symbiont of Nasonia vitripennis. prokMSA_id:006113 M84687 symbiont of incompatibility symbiont of Nasonia vitripennis. prokMSA_id:006106 M84688 symbiont of incompatibility symbiont of Nasonia vitripennis. prokMSA_id:006120 M84689 symbiont of incompatibility symbiont of Nasonia giraulti. prokMSA_id:006127 M84690 symbiont of incompatibility symbiont of Nasonia giraulti. prokMSA_id:006140 M84691 symbiont of incompatibility symbiont of Nasonia longicornis. prokMSA_id:006118 M84692 symbiont of incompatibility symbiont of Nasonia longicornis. prokMSA_id:006112 M85266 endosymbiont of Bangasternus orientalis. prokMSA_id:006121 M85267 endosymbiont of Rhinocyllus conicus. prokMSA_id:006130 U17059 Wolbachia sp. prokMSA_id:006080 U17060 Wolbachia sp. prokMSA_id:006128 U23709 Wolbachia pipientis. prokMSA_id:019803 U44044 Wolbachia sp. prokMSA_id:039962 U44045 Wolbachia sp. prokMSA_id:006108 U80584 Wolbachia sp. prokMSA_id:006094 U83090 Wolbachia sp. prokMSA_id:006095 U83091 Wolbachia sp. prokMSA_id:006096 U83092 Wolbachia sp. prokMSA_id:006097 U83093 Wolbachia sp. prokMSA_id:006098 U83094 Wolbachia sp. prokMSA_id:006099 U83095 Wolbachia sp. prokMSA_id:006100 U83096 Wolbachia sp. prokMSA_id:006101 U83097 Wolbachia sp. prokMSA_id:006109 U83098 Wolbachia sp. prokMSA_id:006110 X61767 Wolbachia pipientis. prokMSA_id:006088 X61768 Wolbachia pipientis. prokMSA_id:006126 X61769 Wolbachia pipientis. prokMSA_id:006087 X61770 Wolbachia pipientis. prokMSA_id:006115 X62247 Wolbachia pipientis. prokMSA_id:006089 X62248 Wolbachia pipientis. prokMSA_id:006138 X64264 Wolbachia sp. prokMSA_id:006135 X64265 Wolbachia sp. prokMSA_id:006111 X64266 Wolbachia sp. prokMSA_id:006119 X64267 Wolbachia sp. prokMSA_id:006136 X65669 Wolbachia sp. prokMSA_id:006139 X65670 Wolbachia pipientis. prokMSA_id:006076 X65671 Wolbachia sp. prokMSA_id:006084 X65672 Wolbachia sp. prokMSA_id:006085 X65673 Wolbachia sp. prokMSA_id:006077 X65674 Wolbachia sp. prokMSA_id:006086 X65675 Wolbachia sp. prokMSA_id:006114 X80977 Wolbachia sp. str. 81. prokMSA_id:006141 X80978 Wolbachia sp. str. 85. prokMSA_id:006078 X80979 Wolbachia sp. str. 89. prokMSA_id:006083 X87406 Wolbachia sp. prokMSA_id:006143 X87407 Wolbachia sp. prokMSA_id:040260 Y11377 Wolbachia endosymbiont of Kalotermes flavicollis specific host K.flavicollis prokMSA_id:006081 Z28983 Wolbachia sp. 2.28.1.8.5.10.999 poor quality 39 seqs prokMSA_id:006091 AF045189 Wolbachia Efor. prokMSA_id:006092 AF045190 Wolbachia Dros. prokMSA_id:032867 AF055259 marine pC8-68 prokMSA_id:068950 AF397410 Wolbachia endosymbiont of Culex quinquefasciatus NIV prokMSA_id:042099 AF468031 Wolbachia pipientis strain wSh prokMSA_id:089524 AF491885 Wolbachia endosymbiont 1 of Acromyrmex octospinosus prokMSA_id:088587 AF491886 Wolbachia endosymbiont 2 of Acromyrmex octospinosus prokMSA_id:088361 AF491889 Wolbachia endosymbiont 5 of Acromyrmex octospinosus prokMSA_id:064246 AF499134 Wolbachia endosymbiont of Brugia timori prokMSA_id:006123 AJ012646 Wolbachia sp. prokMSA_id:076066 AY150558 Wolbachia endosymbiont of Tunga penetrans prokMSA_id:086900 AY157027 Wolbachia endosymbiont of Pulex simulans CGPsi2445 prokMSA_id:086970 AY157500 Wolbachia endosymbiont of Pulex simulans CGPsi2567 prokMSA_id:087301 AY157501 Wolbachia endosymbiont of Pulex simulans CGPsi2789 prokMSA_id:087032 AY157502 Wolbachia endosymbiont of Pulex simulans CGPsi2913 prokMSA_id:087822 AY157503 Wolbachia endosymbiont of Ctenocephalides felis CGCfe3173 prokMSA_id:087439 AY157504 Wolbachia endosymbiont of Ctenocephalides felis CGCfe3304 prokMSA_id:087265 AY157505 Wolbachia endosymbiont of Polygenis gwyni CGPgw3376 prokMSA_id:086996 AY157506 Wolbachia endosymbiont of Orchopeas howardi CGOho3398 prokMSA_id:088032 AY157507 Wolbachia endosymbiont of Pulex simulans CGPsi3488 prokMSA_id:087734 AY157508 Wolbachia endosymbiont of Orchopeas howardi CGOho3543 prokMSA_id:086822 AY157509 Wolbachia endosymbiont of Orchopeas howardi CGOho3552 prokMSA_id:088000 AY157510 Wolbachia endosymbiont of Orchopeas howardi CGOho3554 prokMSA_id:087198 AY157511 Wolbachia endosymbiont of Polygenis gwyni CGPgw3375 prokMSA_id:087849 AY157512 Wolbachia endosymbiont of Ctenocephalides felis CGCca2644 prokMSA_id:087096 AY157513 Wolbachia endosymbiont of Echidnophaga gallinacea CGEga2606 prokMSA_id:086990 AY157514 Wolbachia endosymbiont of Echidnophaga gallinacea CGEga2586 prokMSA_id:093954 AY357990 Wolbachia sp. cEV52 prokMSA_id:095681 AY394613 Wolbachia sp. clone N8-9 prokMSA_id:006103 L02883 symbiont of Trichogramma cordubensis. prokMSA_id:006116 L02885 symbiont of Trichogramma pretiosum. prokMSA_id:006102 L11967 Pacific Ocean station 25 100m depth clone prokMSA_id:006137 S65784 Wolbachia sp. prokMSA_id:036642 U37261 Wolbachia sp. prokMSA_id:043333 U44046 Wolbachia sp. prokMSA_id:006075 X61771 Wolbachia pipientis. prokMSA_id:020057 Y11378 endosymbiont specific host N.luyxi prokMSA_id:021133 Y11379 endosymbiont specific host N.jouteli prokMSA_id:006131 Z49261 symbiont of Dirofilaria immitis. 2.28.1.9 RT.SALEXIGENS_GROUP 9 seqs 2.28.1.9.001 OTU 2 seqs prokMSA_id:056607 AF513443 Rhodospirillaceae LA45 prokMSA_id:006144 D14431 Rhodothalassium salexigens ATCC 35888 . 2.28.1.9.002 OTU 1 seq prokMSA_id:060650 AF406522 alpha clone AEGEAN_239 2.28.1.9.999 poor quality 6 seqs prokMSA_id:032442 AF194188 Rhodospirillum n28d prokMSA_id:056675 AF544877 alpha clone D1-21 prokMSA_id:056199 AF544889 alpha clone D1-86 prokMSA_id:035927 AY038491 alpha clone CD1F8 prokMSA_id:006145 M59070 Rhodothalassium salexigens ATCC 35888 . prokMSA_id:006146 X89302 clone 4a. 2.28.1.10 SPHINGOMONAS_GROUP 1569 seqs 2.28.1.10.1 SPG.YANOIKUYAE_SUBGROUP 228 seqs 2.28.1.10.1.002 OTU 1 seq prokMSA_id:006185 U60171 Sphingomonas chlorophenolica ATCC 33790 . 2.28.1.10.1.003 OTU 1 seq prokMSA_id:006184 U65912 clone Sar248. 2.28.1.10.1.004 OTU 2 seqs prokMSA_id:006183 AB000106 Sphingomonas sp. str. VT1. prokMSA_id:073215 AY151393 Sphingomonas cloacae 2.28.1.10.1.006 OTU 1 seq prokMSA_id:006181 U52146 Sphingomonas sp. str. CF06. 2.28.1.10.1.007 OTU 2 seqs prokMSA_id:006179 X87163 Sphingomonas flava ATCC 29723. prokMSA_id:006157 X87164 Sphingomonas flava str. RA2 DSM 8671. 2.28.1.10.1.009 OTU 1 seq prokMSA_id:006177 AF170090 Sphingomonas UG30 str. UG30. 2.28.1.10.1.011 OTU 1 seq prokMSA_id:006170 U60174 Sphingomonas chlorophenolica str. SR3. 2.28.1.10.1.014 OTU 18 seqs prokMSA_id:006182 AB022428 Sphingomonas herbicidovorans str. MBIC3166. prokMSA_id:018499 AB042233 Sphingomonas herbicidovorans prokMSA_id:006165 AF025350 Sphingomonas BRW2 str. BRW2. prokMSA_id:006155 AF039168 Sphingomonas paucimobilis str. UT26. prokMSA_id:006166 AF191021 str. TA. prokMSA_id:006167 AF191022 str. CD. prokMSA_id:074551 AF335468 Sphingomonas sp. VM506 prokMSA_id:026964 AF335501 Sphingomonas sp. LB126 prokMSA_id:024311 AF395036 Sphingomonas sp. G296-3 prokMSA_id:066288 AF506049 Sphingomonas sp. LCSAOTU113 prokMSA_id:018818 AJ252589 Rhizosphere soil isolate RSI-22 prokMSA_id:055376 AY151392 Sphingomonas chungbukensis prokMSA_id:006154 D16148 Sphingomonas sp. str. SS86. prokMSA_id:006178 U37341 Sphingomonas paucimobilis. prokMSA_id:006168 X87161 Sphingomonas chlorophenolica ATCC 33790 . prokMSA_id:006176 X87162 Sphingomonas chlorophenolica str. SR3. prokMSA_id:006163 X94100 Sphingomonas paucimobilis str. EPA 505. prokMSA_id:038158 Y12803 Sphingomonas agrestis 2.28.1.10.1.015 OTU 1 seq prokMSA_id:006162 AJ011505 Sphingomonas sp. str. DhA-33. 2.28.1.10.1.016 OTU 1 seq prokMSA_id:006158 U60172 Sphingomonas flava ATCC 39723. 2.28.1.10.1.017 OTU 1 seq prokMSA_id:006156 U22537 Sphingomonas sp. str. DhA-33. 2.28.1.10.1.018 OTU 2 seqs prokMSA_id:050868 AF423291 soil clone 749-2 prokMSA_id:017329 AF423296 soil clone 845-2 2.28.1.10.1.019 OTU 11 seqs prokMSA_id:042569 AF245652 gamma NAC60-12 prokMSA_id:046779 AF355040 delta Arctic96AD-7 prokMSA_id:017664 AF440708 delta ARCT1-20 prokMSA_id:064957 AY095644 gamma OS3.5K-38 prokMSA_id:064958 AY095645 delta OS3.5K-40 prokMSA_id:056397 AY095646 delta OS3.5K-41 prokMSA_id:064942 AY095803 SAR324 cluster CS4K-113 prokMSA_id:080055 AY220714 delta clone WCPAP10 prokMSA_id:047801 U86456 marine pN1-23 prokMSA_id:042295 U86505 marine pB1-19 prokMSA_id:024014 U86517 marine pB1-87 2.28.1.10.1.023 OTU 1 seq prokMSA_id:022321 AY038696 clone TAF-B59 2.28.1.10.1.024 OTU 1 seq prokMSA_id:033785 AB074709 Alpha S-A1-4C 2.28.1.10.1.028 OTU 1 seq prokMSA_id:035444 AB077339 alpha clone:TYM--2 2.28.1.10.1.029 OTU 1 seq prokMSA_id:039728 AF159257 Sphingomonas sp. DJ77 2.28.1.10.1.030 OTU 1 seq prokMSA_id:043717 AJ252588 Rhizosphere soil isolate RSI-21 2.28.1.10.1.031 OTU 1 seq prokMSA_id:044440 AJ318184 alpha clone BIsiii24 2.28.1.10.1.032 OTU 1 seq prokMSA_id:050066 AJ252706 Potato plant root clone RC-III-4 2.28.1.10.1.033 OTU 4 seqs prokMSA_id:067345 AF494538 Sphingomonas sp. BPC4 prokMSA_id:094024 AY367015 Sphingomonas paucimobilis isolate Sg5 prokMSA_id:094188 AY367016 Sphingomonas paucimobilis isolate Sg6 prokMSA_id:093613 AY367017 Sphingomonas paucimobilis isolate 12H6 2.28.1.10.1.034 OTU 1 seq prokMSA_id:074738 AY136096 Sphingomonas sp. KIN169 2.28.1.10.1.035 OTU 1 seq prokMSA_id:075006 AY164370 delta clone BLIB-32 2.28.1.10.1.036 OTU 1 seq prokMSA_id:079435 AY187364 clone csbio160241 2.28.1.10.1.037 OTU 37 seqs prokMSA_id:006164 AB025530 Sphingomonas MBIC3990 str. MBIC3990. prokMSA_id:006169 AB025572 Sphingomonas MBIC3992 str. MBIC3992. prokMSA_id:041591 AB040739 Sphingomonas sp. S-3 prokMSA_id:042066 AB047364 Sphingomonas sp. YT prokMSA_id:018537 AB066230 Sphingomonas sp. PT20 prokMSA_id:058518 AB072709 clone:pHAuB-7 prokMSA_id:017959 AB074685 Alpha D-N2-5 prokMSA_id:059708 AB091683 Sphingomonas sp. P2 prokMSA_id:093667 AB104886 Sphingomonas sp. A4 prokMSA_id:084755 AB109749 Sphingobium yanoikuyae prokMSA_id:094883 AB120764 Sphingobium yanoikuyae prokMSA_id:070433 AF181571 Sphingomonas sp. JRL-4 prokMSA_id:073453 AF220320 O14D1 prokMSA_id:090781 AF282616 Sphingomonas sp. KH3-2 prokMSA_id:019344 AF361191 Sphingomonas sp. A3 prokMSA_id:056342 AF494099 Sphingomonas sp. KMG425 prokMSA_id:006173 AJ224940 Sphingomonas sp. str. Koll-16. prokMSA_id:034760 AJ387863 oxSCC-5 prokMSA_id:051751 AJ387870 oxSCC-25 prokMSA_id:044924 AJ387872 oxSCC-29 prokMSA_id:038690 AJ387874 oxSCC-36 prokMSA_id:094602 AJ583165 alpha- clone S15B-MN98 prokMSA_id:050339 AY047219 Sphingobium yanoikuyae prokMSA_id:081332 AY206698 Sphingomonas xenophaga prokMSA_id:083101 AY226307 Sphingomonas sp. clone DBBB-69 prokMSA_id:084999 AY254689 alpha SBR6alpha8 prokMSA_id:086828 AY268290 clone D9 small subunit prokMSA_id:097710 AY387397 Sphingomonas sp. HB1 prokMSA_id:006148 D13728 Sphingomonas yanoikuyae IFO 15102 . prokMSA_id:006180 D13946 Sphingomonas yanoikuyae IFO 15163. prokMSA_id:006171 D16145 Sphingomonas yanoikuyae GIFU 9882 . prokMSA_id:006147 U37524 Sphingomonas yanoikuyae. prokMSA_id:006160 U37525 Sphingomonas yanoikuyae. prokMSA_id:006161 X85023 Sphingomonas yanoikuyae str. B1. prokMSA_id:006174 X87165 Sphingomonas sp. str. SS3 DSM 6432. prokMSA_id:006186 X87167 Sphingomonas sp. str. Q1. prokMSA_id:006172 X94099 Sphingomonas yanoikuyae str. B1. 2.28.1.10.1.038 OTU 1 seq prokMSA_id:084342 AY254692 alpha SBR8alpha4 2.28.1.10.1.039 OTU 1 seq prokMSA_id:087860 AY268314 clone H4 small subunit 2.28.1.10.1.040 OTU 1 seq prokMSA_id:087897 AY278929 Sphingomonas paucimobilis isolate TB24 2.28.1.10.1.041 OTU 1 seq prokMSA_id:088144 AB112465 alpha clone:SUP27-27 2.28.1.10.1.042 OTU 1 seq prokMSA_id:090311 AY328844 Drinking water MB13 2.28.1.10.1.043 OTU 1 seq prokMSA_id:090497 AY328685 DSSF63 2.28.1.10.1.044 OTU 1 seq prokMSA_id:090664 AJ565420 Sphingomonadaceae MWH-CaK2 isolate MWH-CaK2 2.28.1.10.1.045 OTU 1 seq prokMSA_id:090697 AY328789 DSSD92 2.28.1.10.1.046 OTU 1 seq prokMSA_id:091449 AY345575 clone GLB-5 2.28.1.10.1.047 OTU 1 seq prokMSA_id:093363 AY367025 Sphingomonas sp. As1-3 2.28.1.10.1.048 OTU 1 seq prokMSA_id:096110 AJ585215 Sphingobium sp. PS-SwaK3 strain PS-SwaK3 2.28.1.10.1.999 poor quality 123 seqs prokMSA_id:075193 AB075143 clone:TCRS10 prokMSA_id:075702 AB075145 clone:TCRS12 prokMSA_id:075619 AB075194 clone:TSR16 prokMSA_id:083773 AB107142 Alpha K-2035 parital prokMSA_id:082507 AB107146 Alpha K-2041 parital prokMSA_id:085779 AB107154 Alpha K-2056 parital prokMSA_id:085934 AB107155 Alpha K-2057a parital prokMSA_id:084464 AB107157 Alpha K-2058 parital prokMSA_id:084048 AB107163 Alpha K-2064 parital prokMSA_id:006149 AF126915 clone ox10. prokMSA_id:006150 AF126916 clone ox11. prokMSA_id:006151 AF126917 clone c12. prokMSA_id:021932 AF126918 alpha clone ox7 prokMSA_id:039045 AF126919 alpha clone c10 prokMSA_id:043281 AF126920 alpha clone c9 prokMSA_id:035997 AF126923 alpha clone ox8 prokMSA_id:006152 AF126924 clone c11. prokMSA_id:006153 AF126925 clone ox12. prokMSA_id:071767 AF126935 alpha clone ox9 prokMSA_id:048881 AF161809 Aquatic STS_R2A_43 prokMSA_id:028313 AF175594 WJGRT-29 prokMSA_id:043685 AF182026 Sphingomonas sp. BAL53 prokMSA_id:021061 AF182027 Sphingomonas yanoikuyae prokMSA_id:046863 AF211825 Sphingomonas paucimobilis prokMSA_id:031952 AF247784 Soil clone WD5 prokMSA_id:030451 AF270948 clone IAFR208 prokMSA_id:033500 AF270953 clone IAFR317 prokMSA_id:038426 AF270954 clone IAFR401 prokMSA_id:052872 AF270956 clone IAFR424 prokMSA_id:024281 AF270957 clone IAFR501 prokMSA_id:045412 AF283224 alpha MB9a-MO1 prokMSA_id:017801 AF297696 Sphingomonas yanoikuyae prokMSA_id:052543 AF337854 copper smeltery D104 prokMSA_id:033917 AF390907 clone ICBTE8 prokMSA_id:018832 AF406817 Sphingobium yanoikuyae strain B10 prokMSA_id:029874 AF422584 clone t009 prokMSA_id:024610 AF428671 clone CRP99-17 prokMSA_id:037139 AF428703 clone CRP99-49 prokMSA_id:021117 AF428714 clone CRP99-60 prokMSA_id:020630 AF429239 clone CR99-2-53 prokMSA_id:028093 AF459440 Sphingomonas sp. SRS5 prokMSA_id:031522 AF473984 alpha 68-2 prokMSA_id:066145 AF509480 Sphingobium yanoikuyae prokMSA_id:055233 AF530970 Alpha so06 prokMSA_id:069587 AF530978 Alpha so42 prokMSA_id:059472 AF541931 Sphingobium yanoikuyae prokMSA_id:049235 AJ132471 Sphingomonas sp. prokMSA_id:022177 AJ233474 clone WR118 prokMSA_id:026673 AJ233481 clone WR150 prokMSA_id:026399 AJ244322 Riz1019 prokMSA_id:040105 AJ244344 Riz1055 prokMSA_id:041091 AJ292803 WR814 clone WR814 prokMSA_id:050010 AJ292805 WR818 clone WR818 prokMSA_id:041134 AJ292847 WR867 clone WR867 prokMSA_id:071530 AJ296586 DGGE band PSBAC-6 prokMSA_id:020128 AJ404555 Sphingomonas SH2 prokMSA_id:057317 AJ518127 clone Mul01-52 prokMSA_id:089165 AJ565927 Sphingomonas isolate VX-MXL9 prokMSA_id:056149 AY043777 alpha clone SMS9.89WL prokMSA_id:054678 AY055063 clone E22 prokMSA_id:021041 AY055085 clone B26 prokMSA_id:016566 AY055091 clone B8 prokMSA_id:020901 AY055774 Sphingomonas sp. EB01 prokMSA_id:023779 AY056468 Sphingomonas sp. GTIN11 prokMSA_id:084736 AY092355 clone BI150 prokMSA_id:064962 AY095637 SAR324 cluster OS3.5K-25 prokMSA_id:064950 AY095650 delta OS3.5K-45 prokMSA_id:065145 AY095661 OS2K-11 prokMSA_id:065025 AY095825 SAR324 cluster ARCT2-11 prokMSA_id:065009 AY095846 delta ARCT2-49 prokMSA_id:088226 AY116879 Sphingomonas sp. HS122 prokMSA_id:090445 AY116880 Sphingomonas sp. HS163 prokMSA_id:089191 AY116881 Sphingomonas sp. HS311 prokMSA_id:090381 AY116882 Sphingomonas sp. HS312 prokMSA_id:089728 AY116883 Sphingomonas sp. HS351 prokMSA_id:089443 AY116884 Sphingomonas sp. HS352 prokMSA_id:088376 AY116885 Sphingomonas sp. HS362 prokMSA_id:088511 AY116886 Sphingomonas sp. HS372 prokMSA_id:089436 AY116887 Sphingomonas sp. HS380 prokMSA_id:089788 AY116888 Sphingomonas sp. HS412 prokMSA_id:088369 AY116889 Sphingomonas sp. HS416 prokMSA_id:089371 AY116890 Sphingomonas sp. HS419 prokMSA_id:060286 AY129797 Paralactobacillus sp. clone GCPF26 prokMSA_id:059513 AY136529 Sphingomonas sp. A-O20-1 prokMSA_id:059512 AY136530 Sphingomonas sp. A-O20-2 prokMSA_id:076464 AY164335 alpha clone ALIB-107 prokMSA_id:078883 AY180075 Sphingomonas sp. SRS7 prokMSA_id:080867 AY190134 Sphingobium sp. S2 prokMSA_id:080325 AY190136 Sphingobium sp. S37 prokMSA_id:080826 AY190137 Sphingobium sp. S27 prokMSA_id:080821 AY190141 Sphingobium sp. GTIN11 prokMSA_id:080156 AY190143 Sphingobium sp. S36 prokMSA_id:080126 AY190149 Sphingobium sp. S24 prokMSA_id:080850 AY190152 Sphingobium sp. S9 prokMSA_id:079993 AY190153 Sphingobium sp. S18 prokMSA_id:079750 AY190160 Sphingobium sp. S22 prokMSA_id:080111 AY190164 Sphingobium sp. S38.2 prokMSA_id:080749 AY190165 Sphingobium herbicidovorans prokMSA_id:082080 AY212326 Sphingobium sp. S21 prokMSA_id:081154 AY212803 Sphingomonas paucimobilis prokMSA_id:083909 AY226303 delta clone DBBB-53 prokMSA_id:087493 AY278893 Sphingomonas paucimobilis isolate T2-27 prokMSA_id:091353 AY335447 Sphingomonas sp. clone Barl/5 prokMSA_id:091376 AY335449 Sphingomonas sp. clone Barl/7 prokMSA_id:091994 AY335451 Sphingomonas sp. clone Barl/6 prokMSA_id:091639 AY335460 Sphingomonas sp. clone B101/5 prokMSA_id:091503 AY335462 Sphingomonas sp. clone AndE/2 prokMSA_id:091043 AY335463 Sphingomonas sp. clone AndE/6 prokMSA_id:091027 AY335464 Sphingomonas sp. clone AndE/5 prokMSA_id:091362 AY335465 Sphingomonas sp. clone AndE/4 prokMSA_id:091351 AY335472 Sphingomonas sp. clone TM/13 prokMSA_id:091719 AY335475 Sphingomonas sp. clone TM/6 prokMSA_id:091031 AY335478 Sphingomonas sp. clone TM/7 prokMSA_id:094385 AY369156 clone F-OTU19 prokMSA_id:017197 D84526 Sphingomonas yanoikuyae prokMSA_id:006175 S56777 Sphingomonas yanoikuyae LMG 11252 . prokMSA_id:006187 S57491 Rhizomonas sp. str. WI4. prokMSA_id:006159 U60173 Sphingomonas flava str. RA2. prokMSA_id:051304 U63939 Rhizomonas sp. prokMSA_id:029040 U63962 Sphingomonas sp. prokMSA_id:047473 U65911 clone Sar214 complete prokMSA_id:006188 X72725 Sphingomonas yanoikuyae JCM 7371 . prokMSA_id:036000 Z79594 Pseudomonas sp. 2.28.1.10.2 SPG.SP_STR_UN1F1_SUBGROUP 90 seqs 2.28.1.10.2.002 OTU 1 seq prokMSA_id:006197 AJ007875 clone LD10. 2.28.1.10.2.003 OTU 2 seqs prokMSA_id:006194 AB021416 Pseudomonas abikonensis IAM 12404. prokMSA_id:006196 AF157490 Sphingomonas JS5 str. JS5. 2.28.1.10.2.005 OTU 1 seq prokMSA_id:032571 AY026948 Sphingomonas sp. ML1 2.28.1.10.2.006 OTU 1 seq prokMSA_id:040332 AJ000918 Rhizomonas sp. K6 strain K6 2.28.1.10.2.007 OTU 1 seq prokMSA_id:050060 AJ427917 Sphingomonas sp. JS1 2.28.1.10.2.008 OTU 1 seq prokMSA_id:051138 AJ009708 Sphingobium sp. K40 2.28.1.10.2.010 OTU 5 seqs prokMSA_id:006195 AF038030 Sphingomonas Lep1 str. Lep1. prokMSA_id:006193 AF177917 Sphingomonas DhA-95 str. DhA-95. prokMSA_id:071130 AJ009709 Sphingomonas sp. isolate K74 prokMSA_id:065540 AY095427 yard-trimming-compost clone S-62 prokMSA_id:006190 U37345 Sphingomonas sp. str. UN1F1. 2.28.1.10.2.011 OTU 2 seqs prokMSA_id:067411 AJ456955 Sphingomonas sp. WTs-7 isolate WTs-7 prokMSA_id:067408 AJ456956 Sphingomonas sp. WPl-5 isolate WPl-5 2.28.1.10.2.012 OTU 1 seq prokMSA_id:067409 AJ456954 Sphingomonas sp. GIg-12 isolate GIg-12 2.28.1.10.2.013 OTU 1 seq prokMSA_id:075598 AJ532702 alpha clone JG34-KF-161 2.28.1.10.2.015 OTU 38 seqs prokMSA_id:006201 AB025279 Sphingomonas MBIC3020 str. MBIC3020. prokMSA_id:053277 AB074747 Alpha S-Su1-11B prokMSA_id:089498 AB099631 Sphingomonas xenophaga strain: TB4 prokMSA_id:088506 AB099632 Sphingomonas xenophaga strain: AJ6 prokMSA_id:089410 AB099633 Sphingomonas xenophaga strain: AJ8 prokMSA_id:088512 AB099634 Sphingomonas xenophaga strain: P1 prokMSA_id:088477 AB099635 Sphingomonas xenophaga strain: P2 prokMSA_id:089348 AB099636 Sphingomonas xenophaga strain: AJ1 prokMSA_id:049721 AF143839 clone AF1.5 prokMSA_id:006199 AF184222 Pseudomonas Ant17 str. Ant17. prokMSA_id:022476 AF230875 Sphingomonas sp. BN6 prokMSA_id:075742 AJ534669 alpha clone S15A-MN75 prokMSA_id:056122 AY136097 Sphingomonas sp. KIN182 prokMSA_id:074348 AY145548 Alpha AP-9-2 prokMSA_id:090395 AY277556 Sphingomonas sp. prokMSA_id:090401 AY328554 HOClCi5 prokMSA_id:088252 AY328570 HOClCi21 prokMSA_id:090123 AY328571 HOClCi22 prokMSA_id:090683 AY328576 HOClCi27 prokMSA_id:090506 AY328582 HOClCi33 prokMSA_id:090062 AY328587 HOClCi38 prokMSA_id:088373 AY328597 HOClCi48 prokMSA_id:088648 AY328610 HOClCi61 prokMSA_id:089539 AY328617 HOClCi68 prokMSA_id:089926 AY328619 HOClCi70 prokMSA_id:088250 AY328623 HOClCi74 prokMSA_id:089754 AY328815 Drinking water Y10 prokMSA_id:089120 AY328816 Drinking water Y12 prokMSA_id:090698 AY328825 Drinking water Y24 prokMSA_id:089257 AY328827 Drinking water Y28 prokMSA_id:090586 AY328841 Drinking water MB10 prokMSA_id:093744 AY367026 Sphingomonas sp. As1-5 prokMSA_id:098676 AY378190 Extreme arid zone HX-IIF20 prokMSA_id:098503 AY378238 Glacial ice MS-T2-06 prokMSA_id:096551 AY378280 Permafrost DT-IIK18 prokMSA_id:006202 L22759 str. C7. prokMSA_id:006198 U37346 Sphingomonas sp. str. UN1F2. prokMSA_id:006200 X94098 Sphingomonas sp. str. BN6. 2.28.1.10.2.016 OTU 1 seq prokMSA_id:091572 AY345373 L11 2.28.1.10.2.017 OTU 1 seq prokMSA_id:092130 AY349412 Sphingomonas sp. oral clone FZ016 2.28.1.10.2.018 OTU 1 seq prokMSA_id:093185 AY367027 Sphingomonas sp. As2-1 2.28.1.10.2.999 poor quality 33 seqs prokMSA_id:083277 AB107145 Alpha K-2038 parital prokMSA_id:084275 AB107148 Alpha K-2043 parital prokMSA_id:086146 AB107161 Alpha K-2062 parital prokMSA_id:084314 AB107164 Alpha K-2065 parital prokMSA_id:030832 AF078268 Grassland soil clone saf2_420 prokMSA_id:074485 AF090535 BHA19 prokMSA_id:039586 AF141447 alpha clone CRE-FL20 prokMSA_id:028233 AF175610 WJGRT-65 prokMSA_id:051191 AF182030 Sphingomonas sp. BAL33 prokMSA_id:037461 AF182031 Sphingomonas sp. BAL35 prokMSA_id:026542 AF245623 alpha NAC1-14 prokMSA_id:039150 AF469330 alpha 33-PA93B99 prokMSA_id:038127 AJ311426 maize rhizosphere c13_68 prokMSA_id:059506 AY136538 Pseudomonas sp. V-O7-4 prokMSA_id:059502 AY136540 Pseudomonas sp. V-O7-6 prokMSA_id:073714 AY145585 alpha clone DC5-50-12 prokMSA_id:055340 AY145586 alpha clone DC5-50-13 prokMSA_id:073562 AY145591 alpha clone DC5-80-5 prokMSA_id:077547 AY167827 Sphingomonas sp. SAFR-042 prokMSA_id:079866 AY190138 Sphingobium yanoikuyae strain S10 prokMSA_id:080490 AY190148 Sphingobium sp. S14 prokMSA_id:079717 AY190157 Sphingobium sp. S7 prokMSA_id:080997 AY190158 Sphingobium sp. S32 prokMSA_id:081827 AY212327 Sphingobium sp. S35 prokMSA_id:091514 AY335452 Sphingomonas sp. clone Barl/8 prokMSA_id:091108 AY335466 Sphingomonas sp. clone AndE/3 prokMSA_id:091274 AY335484 Sphingomonas sp. clone 3840/5 prokMSA_id:097255 AY378228 Glacial ice ML-E11 prokMSA_id:019889 U63937 Sphingomonas sp. prokMSA_id:032302 U63959 Sphingomonas sp. prokMSA_id:006189 X87166 Sphingomonas sp. str. HH69 DSM 7135. prokMSA_id:006191 Z77358 str. 1-140 C16. prokMSA_id:006192 Z77393 str. 1-420 C11. 2.28.1.10.3 SPG.SP_STR_SYK6 4 seqs 2.28.1.10.3.001 OTU 1 seq prokMSA_id:006203 D16149 Sphingomonas sp. str. SYK6. 2.28.1.10.3.999 poor quality 3 seqs prokMSA_id:018507 AF428762 clone CR98-5-32 prokMSA_id:029565 AF428787 clone CR98-5-57 prokMSA_id:091960 AY335456 Sphingomonas sp. clone B101/3 2.28.1.10.4 ZYM.MOBILIS_SUBGROUP 51 seqs 2.28.1.10.4.001 OTU 10 seqs prokMSA_id:047404 AF088897 Zymomonas mobilis cosmid clone 65G3 prokMSA_id:050955 AF117351 Zymomonas mobilis rrnB operon ; RpfN rpfN complete cds; rrnC operon complete ; MexT mexT putative regulatory protein dihydrodipicolinate synthetase dapA hypothetical ABC transpoter permease protein hypothetical ABC transpoter ATP-binding protein MviM mviM NosX nosX molybdenum transport system protein modD and homocitrate synthase nifV genes complete cds; and unknown genes prokMSA_id:043499 AF281031 Zymomonas mobilis strain ATCC10988 prokMSA_id:028323 AF281032 Zymomonas mobilis strain ATCC29192 prokMSA_id:039861 AF281033 Zymomonas mobilis prokMSA_id:038516 AF281034 Zymomonas mobilis strain ATCC29191 prokMSA_id:083080 AJ554206 Zymomonas mobilis subsp. mobilis strain CECT 947 prokMSA_id:006208 NONE Zymomonas mobilis subsp. pomaceae ATCC 29192 . prokMSA_id:006209 NONE Zymomonas mobilis subsp. mobilis ATCC 10988 . prokMSA_id:006210 U63733 Zymomonas mobilis str. ZM4. 2.28.1.10.4.004 OTU 10 seqs prokMSA_id:006205 AB021492 Sphingomonas wittichii strain DSM 6014 prokMSA_id:045493 AB074666 Alpha D-A4-10 prokMSA_id:044292 AB074712 Alpha S-A1-9B prokMSA_id:041517 AB074714 Alpha S-A3-9A prokMSA_id:087167 AB097175 Sphingomonas sp. J40 prokMSA_id:087421 AB097176 Sphingomonas sp. M2 prokMSA_id:041806 AF292238 Sphingomonas sp. Rd1 prokMSA_id:039213 AF375827 Sphingomonas sp. clone A6 prokMSA_id:022164 AJ251638 Sphingomonas sp. SRS2 strain SRS2 prokMSA_id:006206 U87784 Afipia genosp. 13 str. G8991. 2.28.1.10.4.005 OTU 1 seq prokMSA_id:006204 X94101 Sphingomonas sp. str. A175. 2.28.1.10.4.006 OTU 1 seq prokMSA_id:018013 AJ009706 Sphingomonas sp. K101 isolate K101 2.28.1.10.4.007 OTU 1 seq prokMSA_id:026609 AF145874 Metal-contaminated soil clone K20-90 2.28.1.10.4.008 OTU 1 seq prokMSA_id:030355 AJ292601 WD267 clone WD267 2.28.1.10.4.009 OTU 1 seq prokMSA_id:034245 AB027691 Sphingomonas-like B12 2.28.1.10.4.010 OTU 1 seq prokMSA_id:076152 AY154542 earthworm intestine clone lw21 2.28.1.10.4.011 OTU 1 seq prokMSA_id:084826 AY242694 soil clone Tc132-58 2.28.1.10.4.999 poor quality 24 seqs prokMSA_id:028956 AF107070 Sphingomonas sp. BL218-1 prokMSA_id:050957 AF128708 soil C0111 prokMSA_id:031030 AF143762 alpha clone K1 prokMSA_id:070781 AF234097 #0319-7H7 prokMSA_id:050665 AF277742 MB9a-RC2 prokMSA_id:052559 AF460948 Marine SIMO-IS207 prokMSA_id:047391 AJ292619 WD245 clone WD245 prokMSA_id:056958 AJ518619 clone Sai1P1-2 prokMSA_id:088656 AJ576094 Sphingomonas sp. clone 40 prokMSA_id:094112 AJ582601 clone M90-10 prokMSA_id:040492 AY037579 soil clone S045 prokMSA_id:046376 AY039380 Earthworm burrow B34D1 prokMSA_id:061481 AY043741 alpha clone NMW3.178WL prokMSA_id:061475 AY043747 alpha clone NMW3.67WL prokMSA_id:061472 AY043754 alpha clone SMW4.37WL prokMSA_id:061434 AY043800 gamma clone SMW4.7WL prokMSA_id:080718 AY192259 alpha clone P3-3C prokMSA_id:087947 AY268277 clone G3 small subunit prokMSA_id:091123 AY335453 Sphingomonas sp. clone Barl/1 prokMSA_id:091477 AY335461 Sphingomonadaceae clone AndE/1 prokMSA_id:091018 AY335469 Sphingomonas sp. clone TM/9 prokMSA_id:091382 AY335483 Sphingomonas sp. clone 3840/4 prokMSA_id:006207 X72723 Sphingomonas sp. str. RW1. prokMSA_id:006211 X84586 str. SBR2050. 2.28.1.10.5 SPG.PAUCIMOBILIS_SUBGROUP 190 seqs 2.28.1.10.5.003 OTU 2 seqs prokMSA_id:088050 AY268344 clone A1 small subunit prokMSA_id:006222 D16146 Sphingomonas adhaesiva GIFU 11458 . 2.28.1.10.5.005 OTU 2 seqs prokMSA_id:006220 AF105023 Sphingomonas DD38 str. DD38. prokMSA_id:043848 D84521 Sphingomonas sp. MK346 2.28.1.10.5.007 OTU 18 seqs prokMSA_id:006227 AB015565 str. BD5-9. prokMSA_id:040282 AB021370 Sphingomonas echinoides strain ATCC 14820T prokMSA_id:077898 AB074638 alpha clone:APe4_48 prokMSA_id:078406 AB074641 alpha clone:APe2_85 prokMSA_id:044873 AF385529 Sphingomonas sp. oral clone AV069 prokMSA_id:080521 AF468224 clone ARKCH2Br2-96 prokMSA_id:091337 AF509580 alpha prokMSA_id:006224 AJ001344 unnamed organism. prokMSA_id:006223 AJ012461 Pseudomonas echinoides DSM 1805 . prokMSA_id:037154 AJ289965 isolate AH76 prokMSA_id:042568 AJ290027 GKS2-124 prokMSA_id:077176 AY162908 clone ZB-Z16 prokMSA_id:075825 AY162910 clone ZB-Z99 prokMSA_id:088723 AY315166 Glacier FXS25 prokMSA_id:031767 X89903 Sphingomonas sp. PC5.2 strain PC5.2 prokMSA_id:048722 X89909 Sphingomonas sp. PC5.28 strain PC5.28 prokMSA_id:044409 X99983 sp. clone 1200-63 prokMSA_id:006219 Z23157 Blastobacter sp. str. BF14 ?. 2.28.1.10.5.012 OTU 1 seq prokMSA_id:019915 D84518 Sphingomonas sp. MK329 2.28.1.10.5.015 OTU 2 seqs prokMSA_id:070529 AF227857 str. 86356 prokMSA_id:025251 AF395037 Sphingomonas sp. G296-14 2.28.1.10.5.016 OTU 1 seq prokMSA_id:058870 AF423077 Alpha '#33 orange' 2.28.1.10.5.017 OTU 1 seq prokMSA_id:058866 AF425997 UNSW2 2.28.1.10.5.018 OTU 1 seq prokMSA_id:058865 AF425999 UNSW4 2.28.1.10.5.019 OTU 1 seq prokMSA_id:049435 AF395038 Sphingomonas sp. CanClear1 2.28.1.10.5.020 OTU 1 seq prokMSA_id:066478 AY100613 clone cvf70131 2.28.1.10.5.022 OTU 22 seqs prokMSA_id:078089 AB074640 alpha clone:APe2_63 prokMSA_id:006221 AF184221 Pseudomonas Ant20 str. Ant20. prokMSA_id:073719 AF324199 Sphingomonas sp. V1 prokMSA_id:022537 AF395031 Sphingomonas sp. M3C203B-B prokMSA_id:055900 AF548567 Sphingomonas sp. eh2 prokMSA_id:060251 AJ429237 Sphingomonas aurantiaca strain MA306a prokMSA_id:056243 AJ429239 Sphingomonas faenia strain MA-olki prokMSA_id:071383 AJ429240 Sphingomonas aerolata strain NW12 prokMSA_id:032855 AJ431337 Sphingomonas sp. ikaite c4 isolate ikaite c4 prokMSA_id:089559 AJ576092 Sphingomonas sp. clone 8 prokMSA_id:093433 AJ581618 alpha clone KCM-C-8 prokMSA_id:094653 AJ583164 alpha- clone S15B-MN112 prokMSA_id:091921 AY336530 Sphingomonas sp. pfB1 prokMSA_id:091185 AY336550 Sphingomonas sp. pfB21 prokMSA_id:091510 AY336556 Sphingomonas sp. pfB27 prokMSA_id:092120 AY359824 Sphingomonas sp. clone cEIII6 prokMSA_id:092980 AY359832 Sphingomonas sp. clone cEIII37 prokMSA_id:092984 AY359834 Sphingomonas sp. clone cEIII40 prokMSA_id:092215 AY359839 Sphingomonas sp. clone cEIII48 prokMSA_id:093005 AY359846 Sphingomonas sp. clone cEIII55 prokMSA_id:092799 AY359849 Sphingomonas sp. clone cEIII58 prokMSA_id:093532 AY364029 Sphingomonas sp. iEIII15 2.28.1.10.5.024 OTU 18 seqs prokMSA_id:044864 AB033944 Sphingomonas echinoides prokMSA_id:055497 AB071955 Sphingomonas yabuuchiae prokMSA_id:030633 AF469327 alpha 33-PA39B99 prokMSA_id:023465 AF469338 alpha 33-FL9B99 prokMSA_id:068727 AF479378 Glacial ice M3C1.8K-TD1 prokMSA_id:060396 AF513440 Sphingomonadaceae LA19 prokMSA_id:059540 AF538746 CAGY7 strain CAGY7 prokMSA_id:074840 AJ295690 Sphingomonas parapaucimobilis strain TzT-JG-2-6 prokMSA_id:095162 AJ583168 alpha- clone S15D-MN50 prokMSA_id:006212 D13724 Sphingomonas parapaucimobilis IFO 15100 . prokMSA_id:006215 D16144 Sphingomonas paucimobilis GIFU 2395 . prokMSA_id:042710 D84519 Sphingomonas sp. MK331 prokMSA_id:026323 D84520 Sphingomonas sp. MK341 prokMSA_id:023168 D84523 Sphingomonas sp. MK355 prokMSA_id:043164 D84525 Sphingomonas parapaucimobilis prokMSA_id:027012 D84529 Sphingomonas sanguis prokMSA_id:006217 U20776 Sphingomonas paucimobilis ATCC 29837 . prokMSA_id:006229 U37337 Sphingomonas paucimobilis ATCC 29837 . 2.28.1.10.5.025 OTU 1 seq prokMSA_id:077307 AY167834 Sphingomonas sp. SAFR-027 2.28.1.10.5.026 OTU 1 seq prokMSA_id:077316 AY167840 Sphingomonas sp. SAFR-010 2.28.1.10.5.027 OTU 1 seq prokMSA_id:077510 AY167833 Sphingomonas sp. SAFR-028 2.28.1.10.5.028 OTU 1 seq prokMSA_id:083813 AY250859 alpha clone BPU225 2.28.1.10.5.029 OTU 5 seqs prokMSA_id:086966 AY268260 clone B3 small subunit prokMSA_id:087213 AY268261 clone D5 small subunit prokMSA_id:087225 AY268266 clone C12 small subunit prokMSA_id:087233 AY268281 clone E3 small subunit prokMSA_id:086845 AY268284 clone H4 small subunit 2.28.1.10.5.030 OTU 1 seq prokMSA_id:087116 AY268257 clone D1 small subunit 2.28.1.10.5.031 OTU 1 seq prokMSA_id:087739 AY268312 clone E4 small subunit 2.28.1.10.5.032 OTU 1 seq prokMSA_id:089343 AJ576099 Sphingomonas sp. clone 153 2.28.1.10.5.033 OTU 1 seq prokMSA_id:090528 AJ576093 Sphingomonas sp. clone 12 2.28.1.10.5.999 poor quality 107 seqs prokMSA_id:040305 AB011707 alpha strain: G23129 prokMSA_id:086634 AB097960 Alpha ANRS2-1 prokMSA_id:085272 AB097961 Alpha ANRS2-3 prokMSA_id:084347 AB097962 Alpha ANRS2-4 prokMSA_id:084074 AB097963 Alpha ANRS2-5 prokMSA_id:086695 AB097964 Alpha ANRS2-6 prokMSA_id:083913 AB097965 Alpha ANRS2-7 prokMSA_id:083465 AB097966 Alpha ANRS2-8 prokMSA_id:082899 AB097969 Alpha ANRS3-4 prokMSA_id:086479 AB097970 Alpha ANRS3-5 prokMSA_id:085588 AB097971 Alpha ANRS3-7 prokMSA_id:084465 AB097973 Alpha ANRS4-3 prokMSA_id:083920 AB097977 Alpha ANRS9-1 prokMSA_id:084788 AB106916 Alpha 0-12 prokMSA_id:047583 AF078290 Grassland soil clone saf3_101 prokMSA_id:026962 AF078320 Grassland soil clone sl1_007 prokMSA_id:045039 AF078333 Grassland soil clone sl1_106 prokMSA_id:074849 AF078350 Grassland soil clone sl1_213 prokMSA_id:048362 AF078356 Grassland soil clone sl1_219 prokMSA_id:039979 AF078424 Grassland soil clone sl3_617 prokMSA_id:046971 AF106593 Sphingomonas paucimobilis prokMSA_id:045639 AF130414 Aquatic STS_R2A_16 prokMSA_id:073424 AF175620 WJGRT-79 prokMSA_id:052659 AF175895 Aquatic RUB_NH4_11 prokMSA_id:043183 AF182029 Sphingomonas sp. BAL8 prokMSA_id:018962 AF240148 TSA-5.2 prokMSA_id:032261 AF311983 Sphingomonas mali a54 prokMSA_id:074746 AF311984 Sphingomonas mali a58 prokMSA_id:044455 AF312671 Sphingomonas sp. M8 prokMSA_id:044665 AF379036 clone EV22 prokMSA_id:032138 AF399924 alpha clone AK99 prokMSA_id:075923 AF431172 alpha clone N41.143PG prokMSA_id:073341 AF466892 gamma isolate DGGE band C34 prokMSA_id:068831 AF469355 alpha CTD30B prokMSA_id:067427 AF493322 clone pHS123 prokMSA_id:058124 AF498694 Ellin312 prokMSA_id:073650 AF498718 Ellin336 prokMSA_id:056104 AF530917 Alpha sj09 prokMSA_id:069401 AF530921 Alpha sj22 prokMSA_id:071437 AF530944 Alpha wj45 prokMSA_id:071164 AF531028 Alpha Mzo4 prokMSA_id:072585 AF544924 alpha clone 3-6-5 prokMSA_id:022100 AJ232860 clone LRS15 prokMSA_id:040686 AJ233506 clone WR1138 prokMSA_id:016430 AJ289940 1405-56 prokMSA_id:073257 AJ289941 1405-60 prokMSA_id:026136 AJ292816 WR866 clone WR866 prokMSA_id:043732 AJ299575 Afipia sp. CZ332 isolate CZ332 prokMSA_id:043331 AJ409155 Sphingomonas sp. strain dtb43 prokMSA_id:071349 AJ429236 Sphingomonas aurantiaca strain MA101b prokMSA_id:060250 AJ429238 Sphingomonas aurantiaca strain MA405 prokMSA_id:063900 AJ493377 clone m3-2 prokMSA_id:057062 AJ518482 clone Qui2P1-51 prokMSA_id:070788 AJ518527 clone Qui2P3-45 prokMSA_id:088966 AJ576096 Sphingomonas sp. clone 118 prokMSA_id:090459 AJ576097 Sphingomonas sp. clone 131 prokMSA_id:088131 AJ576098 Sphingomonas sp. clone 138 prokMSA_id:088257 AJ576100 Sphingomonas sp. clone 154 prokMSA_id:061581 AY043622 alpha clone NOW2.91WL prokMSA_id:061566 AY043643 alpha clone NOS7.39WL prokMSA_id:018642 AY055069 clone S13 prokMSA_id:073657 AY055072 clone S21 prokMSA_id:037980 AY055073 clone S23 prokMSA_id:028309 AY055076 clone S41 prokMSA_id:057331 AY150566 Uncultivated soil clone Dpcom47 prokMSA_id:077250 AY159165 MF_isolate_29 prokMSA_id:076347 AY168722 clone HC-25AP prokMSA_id:086728 AY268255 clone C1 small subunit prokMSA_id:086908 AY268279 clone A2 small subunit prokMSA_id:087272 AY268280 clone B2 small subunit prokMSA_id:087639 AY268321 clone A9 small subunit prokMSA_id:087193 AY268324 clone G2 small subunit prokMSA_id:087077 AY268347 clone D3 small subunit prokMSA_id:089656 AY323182 alpha clone A114-11 prokMSA_id:091026 AY335476 Sphingomonas sp. clone TM/2 prokMSA_id:093628 AY357953 Sphingomonas sp. cEV10 prokMSA_id:093729 AY357960 alpha cEV17 prokMSA_id:093763 AY357987 Sphingomonas sp. cEV48 prokMSA_id:093522 AY357993 Sphingomonas sp. cEV58 prokMSA_id:093458 AY364023 Sphingomonas sp. iEII15 prokMSA_id:094190 AY364024 Sphingomonas sp. iEII17 prokMSA_id:093239 AY364031 Sphingomonas sp. iEIV10 prokMSA_id:098208 AY391627 soil clone M11 prokMSA_id:095744 AY391647 soil clone M31 prokMSA_id:095926 AY391683 soil clone M67 prokMSA_id:095380 AY391691 soil clone M75 prokMSA_id:096093 AY394621 Sphingomonas sp. clone N10-20 prokMSA_id:098367 AY394622 Sphingomonas sp. clone W4-4 prokMSA_id:097215 AY394623 Sphingomonas sp. clone N11-22 prokMSA_id:098668 AY394624 Sphingomonas sp. clone W2-20 prokMSA_id:006213 D13725 Sphingomonas paucimobilis IFO 13935 . prokMSA_id:006216 D13726 Sphingomonas sanguinis IFO 13937 . prokMSA_id:006232 D26213 soil from paddy field clone PAD26. prokMSA_id:041689 D84522 Sphingomonas sp. MK347 prokMSA_id:020835 D84524 Sphingomonas sp. OSG-47 prokMSA_id:044310 D84527 Sphingomonas adhaesiva prokMSA_id:025542 D84532 Sphingomonas capsulata prokMSA_id:006225 D84605 str. S23322. prokMSA_id:006226 D84606 str. S23323. prokMSA_id:006231 NONE Sphingomonas paucimobilis ATCC 10829. prokMSA_id:006218 S56776 Sphingomonas paucimobilis LMG 1227 . prokMSA_id:071126 U78919 alpha prokMSA_id:006214 X72720 Sphingomonas adhaesiva JCM 7370 . prokMSA_id:006230 X72721 Sphingomonas parapaucimobilis JCM 7510 . prokMSA_id:006228 X72722 Sphingomonas paucimobilis ATCC 29837 . prokMSA_id:022980 X89906 Sphingomonas sp. PC1.3 strain PC1.3 prokMSA_id:024859 X89917 Sphingomonas sp. PC30.5B strain PC30.5B 2.28.1.10.6 SPG.PRUNI_SUBGROUP 218 seqs 2.28.1.10.6.001 OTU 3 seqs prokMSA_id:006252 D28568 Sphingomonas pruni str. Y-250 IFO 15498 . prokMSA_id:006253 D28571 Sphingomonas asaccharolytica str. Y-345 IFO 15499 . prokMSA_id:006254 D28574 Sphingomonas mali str. Y-347 IFO 15500 . 2.28.1.10.6.003 OTU 3 seqs prokMSA_id:006247 AF031240 Sphingomonas JSS-28 str. JSS-28 KCTC 2883. prokMSA_id:006250 AF131296 Sphingomonas JSS-26 str. JSS-26. prokMSA_id:090645 AF443567 clone C-CF-15 2.28.1.10.6.008 OTU 1 seq prokMSA_id:006245 AF115500 Caulobacter WCP2020S str. WCP2020S. 2.28.1.10.6.016 OTU 1 seq prokMSA_id:006238 AF116181 Caulobacter CB296 str. CB296. 2.28.1.10.6.017 OTU 4 seqs prokMSA_id:031176 AF337879 gold mine D23 prokMSA_id:074773 AJ252608 Agricultural soil clone SC-I-4 prokMSA_id:047855 AJ252642 Agricultural soil clone SC-I-56 prokMSA_id:017649 AJ252691 Rhizosphere soil clone RSC-II-67 2.28.1.10.6.021 OTU 1 seq prokMSA_id:059180 AY136092 Sphingomonas sp. KIN150 2.28.1.10.6.022 OTU 1 seq prokMSA_id:059177 AY136094 Sphingomonas sp. KIN165 2.28.1.10.6.023 OTU 1 seq prokMSA_id:025242 AB033945 Sphingomonas sp. strain:IFO 15914 2.28.1.10.6.024 OTU 1 seq prokMSA_id:026183 AJ292616 WD290 clone WD290 2.28.1.10.6.025 OTU 1 seq prokMSA_id:058867 AF425996 UNSW1 2.28.1.10.6.026 OTU 1 seq prokMSA_id:071320 AY145633 FL10C05 2.28.1.10.6.027 OTU 3 seqs prokMSA_id:029897 AF337870 gold mine D48 prokMSA_id:082992 AY274127 clone D117 prokMSA_id:083978 AY274158 clone D40 2.28.1.10.6.028 OTU 2 seqs prokMSA_id:044980 AF408323 Sphingomonas sp. clone KL-2-4-7 prokMSA_id:029930 AF408325 Sphingomonadaceae clone KL-2-4-1 2.28.1.10.6.029 OTU 1 seq prokMSA_id:031402 AJ292605 WD286 clone WD286 2.28.1.10.6.030 OTU 1 seq prokMSA_id:031927 AJ232863 clone LRE17 2.28.1.10.6.031 OTU 1 seq prokMSA_id:034362 AF423289 soil clone 739-2 2.28.1.10.6.032 OTU 2 seqs prokMSA_id:050823 AB074728 Alpha S-N1-21B prokMSA_id:034996 AB074731 Alpha S-N1-8A 2.28.1.10.6.033 OTU 1 seq prokMSA_id:036286 X89905 Sphingomonas sp. BF2 strain BF2 2.28.1.10.6.034 OTU 1 seq prokMSA_id:045073 AF388890 Sphingomonas sp. clone GOBB3-CL260 2.28.1.10.6.037 OTU 1 seq prokMSA_id:049731 AF395032 Sphingomonas sp. SIA181-1A1 2.28.1.10.6.038 OTU 1 seq prokMSA_id:050190 AF445712 alpha clone SM2B06 2.28.1.10.6.039 OTU 2 seqs prokMSA_id:050700 AJ292591 WD208 clone WD208 prokMSA_id:077538 AY081166 Sphingomonas sp. S-2 2.28.1.10.6.040 OTU 1 seq prokMSA_id:060283 AY129802 Sphingomonas sp. clone GCPF33 2.28.1.10.6.042 OTU 1 seq prokMSA_id:065471 AY102311 clone a13104 2.28.1.10.6.043 OTU 1 seq prokMSA_id:065473 AY102309 clone a13102 2.28.1.10.6.044 OTU 2 seqs prokMSA_id:072535 AF423253 soil clone 367-2 prokMSA_id:066504 AY100583 clone cvf70169 2.28.1.10.6.045 OTU 1 seq prokMSA_id:068657 AY081987 clone KRA30-07 2.28.1.10.6.046 OTU 1 seq prokMSA_id:073393 AF423277 soil clone 565-2 2.28.1.10.6.047 OTU 1 seq prokMSA_id:073993 AJ416160 clone Med0-09 2.28.1.10.6.048 OTU 1 seq prokMSA_id:074174 AF423293 soil clone 768-2 2.28.1.10.6.049 OTU 2 seqs prokMSA_id:075048 AJ532708 alpha clone JG34-KF-388 prokMSA_id:074534 AY102315 clone a13108 2.28.1.10.6.050 OTU 1 seq prokMSA_id:076149 AJ518765 alpha clone JG37-AG-18 2.28.1.10.6.051 OTU 1 seq prokMSA_id:077230 AY159184 RO_clone_1C 2.28.1.10.6.052 OTU 1 seq prokMSA_id:078108 AB074601 alpha clone:APe4_19 2.28.1.10.6.053 OTU 1 seq prokMSA_id:079521 AY187320 clone csbio160393 2.28.1.10.6.054 OTU 1 seq prokMSA_id:080458 AB094961 clone:OHKB16.89 2.28.1.10.6.055 OTU 2 seqs prokMSA_id:084448 AY242692 soil clone Tc130-32 prokMSA_id:086391 AY254693 alpha SBR8alpha5 2.28.1.10.6.058 OTU 58 seqs prokMSA_id:006240 AB008391 Caulobacter leidyi ATCC 15260 . prokMSA_id:006251 AB018439 Sphingomonas sp. str. S213. prokMSA_id:021753 AB033946 Sphingomonas sp. strain:IFO 15496 prokMSA_id:047031 AB033947 Sphingomonas sp. strain:IFO 15497 prokMSA_id:019856 AB033948 Sphingomonas sp. strain:IFO 15495 prokMSA_id:063347 AB055863 Sphingomonas melonis prokMSA_id:045792 AB074692 Alpha D-St1-7C prokMSA_id:006249 AF131295 Sphingomonas sp. JSS-7 prokMSA_id:074176 AF385533 Sphingomonas sp. oral clone AW030 prokMSA_id:020018 AF469329 alpha 33-PA17B99 prokMSA_id:065323 AF503277 Sphingomonas sp. ATCC 21423 prokMSA_id:065329 AF503278 Sphingomonas elodea prokMSA_id:065327 AF503279 Sphingomonas sp. ATCC 31554 prokMSA_id:065328 AF503280 Sphingomonas sp. ATCC 31555 prokMSA_id:065322 AF503281 Sphingomonas sp. ATCC 31961 prokMSA_id:065321 AF503282 Sphingomonas sp. ATCC 31853 prokMSA_id:056495 AF503283 Sphingomonas sp. ATCC 35159 prokMSA_id:006235 AJ007799 Asticcacaulis biprosthecium str. MBIC3411 ACM 2498 . prokMSA_id:006234 AJ007800 Asticcacaulis excentricus ACM 1263 . prokMSA_id:006239 AJ007806 Caulobacter leidyi ATCC 15260 . prokMSA_id:006242 AJ224938 str. Koll-1. prokMSA_id:006236 AJ227812 Caulobacter leidyi ATCC 15260 . prokMSA_id:040384 AJ243751 Sphingomonas pituitosa strain EDIV prokMSA_id:031687 AJ292600 WD252 clone WD252 prokMSA_id:020557 AJ307938 mRNA clone sipK48 prokMSA_id:070071 AJ313019 Sphingomonas sp. MN 122.2a isolate MN 122.2a prokMSA_id:035309 AJ387868 oxSCC-22 prokMSA_id:086135 AJ555475 Sphingomonas sp. MN 18.3a strain MN 18.3a prokMSA_id:066630 AY094496 alpha clone 1-19 prokMSA_id:087846 AY268245 clone F10 small subunit prokMSA_id:087771 AY268256 clone C2 small subunit prokMSA_id:086739 AY268265 clone C11 small subunit prokMSA_id:087719 AY268269 clone D7 small subunit prokMSA_id:087738 AY268295 clone A2 small subunit prokMSA_id:087414 AY268296 clone B1 small subunit prokMSA_id:086769 AY268304 clone G2 small subunit prokMSA_id:086793 AY268315 clone A9 small subunit prokMSA_id:086722 AY268316 clone A10 small subunit prokMSA_id:089642 AY328555 HOClCi6 prokMSA_id:089964 AY328559 HOClCi10 prokMSA_id:089076 AY328561 HOClCi12 prokMSA_id:090303 AY328563 HOClCi14 prokMSA_id:089681 AY328577 HOClCi28 prokMSA_id:089594 AY328583 HOClCi34 prokMSA_id:090335 AY328584 HOClCi35 prokMSA_id:089013 AY328585 HOClCi36 prokMSA_id:088560 AY328592 HOClCi43 prokMSA_id:088345 AY328601 HOClCi52 prokMSA_id:090665 AY328602 HOClCi53 prokMSA_id:089304 AY328603 HOClCi54 prokMSA_id:090560 AY328611 HOClCi62 prokMSA_id:088570 AY328612 HOClCi63 prokMSA_id:088773 AY328613 HOClCi64 prokMSA_id:006246 U87782 Afipia genosp. 11 str. G9070. prokMSA_id:006241 X97776 Sphingomonas trueperi LMG 2142 . prokMSA_id:006243 Y09637 Sphingomonas pruni str. Y-250 IFO 15498 . prokMSA_id:006244 Y09638 Sphingomonas mali str. Y-347 IFO 15500 . prokMSA_id:006248 Y09639 Sphingomonas asaccharolytica IFO 10564. 2.28.1.10.6.059 OTU 1 seq prokMSA_id:086742 AY278913 Sphingomonas mali 2.28.1.10.6.060 OTU 1 seq prokMSA_id:086851 AY268264 clone A11 small subunit 2.28.1.10.6.061 OTU 2 seqs prokMSA_id:087201 AY268271 clone A10 small subunit prokMSA_id:086875 AY268272 clone F9 small subunit 2.28.1.10.6.062 OTU 1 seq prokMSA_id:086901 AY268276 clone G9 small subunit 2.28.1.10.6.063 OTU 1 seq prokMSA_id:086964 AY278874 Sphingomonas sp. CT7 2.28.1.10.6.064 OTU 1 seq prokMSA_id:086980 AY278866 Sphingomonas sp. CT12 2.28.1.10.6.065 OTU 1 seq prokMSA_id:087044 AY268270 clone A9 small subunit 2.28.1.10.6.066 OTU 2 seqs prokMSA_id:087046 AY268229 clone C4 small subunit prokMSA_id:094017 AY367032 Sphingomonas sp. As2-3 2.28.1.10.6.067 OTU 1 seq prokMSA_id:087352 AY268297 clone C1 small subunit 2.28.1.10.6.068 OTU 1 seq prokMSA_id:087588 AY268328 clone G1 small subunit 2.28.1.10.6.069 OTU 1 seq prokMSA_id:087684 AY278873 Sphingomonas sp. CT6 2.28.1.10.6.070 OTU 1 seq prokMSA_id:087686 AY278941 Sphingomonas sp. TB43 2.28.1.10.6.071 OTU 1 seq prokMSA_id:088026 AY268340 clone A3 small subunit 2.28.1.10.6.072 OTU 1 seq prokMSA_id:088872 AY328628 DSSF5 2.28.1.10.6.073 OTU 9 seqs prokMSA_id:090555 AY328556 HOClCi7 prokMSA_id:089657 AY328557 HOClCi8 prokMSA_id:090307 AY328644 DSSF21 prokMSA_id:090367 AY328694 DSSF72 prokMSA_id:090548 AY328706 DSSD7 prokMSA_id:089065 AY328707 DSSD8 prokMSA_id:089525 AY328740 DSSD41 prokMSA_id:089367 AY328752 DSSD54 prokMSA_id:090104 AY328774 DSSD76 2.28.1.10.6.074 OTU 1 seq prokMSA_id:089233 AF443569 clone C-CF-28 2.28.1.10.6.075 OTU 1 seq prokMSA_id:090114 AJ575818 Sphingomonas sp. C52 strain C52 2.28.1.10.6.076 OTU 1 seq prokMSA_id:090408 AJ576095 Sphingomonas sp. clone 70 2.28.1.10.6.077 OTU 1 seq prokMSA_id:090440 AY328688 DSSF66 2.28.1.10.6.078 OTU 1 seq prokMSA_id:090538 AJ575817 Sphingomonas sp. C42 strain C42 2.28.1.10.6.079 OTU 1 seq prokMSA_id:091884 AY345442 KA77 2.28.1.10.6.080 OTU 1 seq prokMSA_id:093683 AJ581589 alpha clone KCM-B-125 2.28.1.10.6.081 OTU 1 seq prokMSA_id:098628 AY382611 clone S372 2.28.1.10.6.999 poor quality 75 seqs prokMSA_id:019979 AB011704 alpha strain: G23119 prokMSA_id:084845 AB097991 Alpha ANRB8-2 prokMSA_id:050494 AF078256 Grassland soil clone saf2_223 prokMSA_id:051246 AF078278 Grassland soil clone saf3_007 prokMSA_id:048094 AF078380 Grassland soil clone sl2_520 prokMSA_id:051322 AF078444 Grassland soil clone sl3_813 prokMSA_id:018536 AF126921 alpha clone ox6 prokMSA_id:030890 AF128680 soil S016 prokMSA_id:053147 AF128725 soil C046 prokMSA_id:022894 AF141448 alpha clone CRE-FL21 prokMSA_id:035651 AF161806 Aquatic STS_R2A_01 prokMSA_id:020803 AF226183 Maize root ZmrIs3W prokMSA_id:066135 AF226249 maize root Zmrc264 prokMSA_id:051818 AF316777 Crater Lake CL0-16 prokMSA_id:043826 AF316778 Crater Lake CL0-60 prokMSA_id:039340 AF316781 Crater Lake CL500-33 prokMSA_id:031857 AF429259 clone CR99-2-73 prokMSA_id:075490 AF431063 alpha clone N11.135WL prokMSA_id:075526 AF431079 alpha clone C16.18WL prokMSA_id:076188 AF431105 alpha clone S21.47WL prokMSA_id:075695 AF431109 alpha clone S22.26WL prokMSA_id:076035 AF431111 alpha clone S22.28WL prokMSA_id:076704 AF431139 alpha clone N27.63SM prokMSA_id:068708 AF484058 clone p69 prokMSA_id:067599 AF493066 Sphingomonas sp. clone GOBB3-CL309 prokMSA_id:067435 AF493306 clone pHS105 prokMSA_id:067434 AF493308 clone pHS107 prokMSA_id:067432 AF493315 clone pHS115 prokMSA_id:067421 AF493330 clone pHS133 prokMSA_id:058125 AF498695 Ellin313 prokMSA_id:067122 AF499330 clone JCL4-114 prokMSA_id:067118 AF499336 clone JCL4-70 prokMSA_id:067116 AF499339 clone JCL4-48 prokMSA_id:067113 AF499341 clone JCL4-109 prokMSA_id:067101 AF499356 clone JCL9-107 prokMSA_id:055477 AF499357 clone JCL9-93 prokMSA_id:065897 AF507424 soil clone C0227 prokMSA_id:069155 AF530916 Alpha sj06 prokMSA_id:055526 AF530958 Alpha zj31 prokMSA_id:071846 AF530960 Alpha zj40 prokMSA_id:055333 AF532053 alpha clone 3551-8 prokMSA_id:031472 AJ006013 clone TBS7 prokMSA_id:071717 AJ233476 clone WR132 prokMSA_id:024612 AJ308291 clone F99_29 prokMSA_id:043568 AJ311427 maize rhizosphere c14_68 prokMSA_id:071464 AJ313029 Sphingomonas sp. MN 18.3a isolate MN 18.3a prokMSA_id:032981 AY038695 clone TAF-A7 prokMSA_id:061588 AY043615 alpha clone NOW2.48WL prokMSA_id:061582 AY043620 alpha clone NOW2.78WL prokMSA_id:056474 AY043626 alpha clone NOW2.XWL prokMSA_id:061576 AY043628 alpha clone NOS7.108WL prokMSA_id:061573 AY043636 alpha clone NOS7.137WL prokMSA_id:061468 AY043758 alpha clone SMW4.51WL prokMSA_id:066858 AY096155 clone F2-9 prokMSA_id:094138 AY145877 alpha isolate DGGE band RWA43 prokMSA_id:057332 AY150565 Uncultivated soil clone Dpcom46 prokMSA_id:079602 AY190163 Sphingomonas sp. S19 prokMSA_id:083849 AY254695 alpha SBR6alpha4 prokMSA_id:086886 AY268263 clone E5 small subunit prokMSA_id:087387 AY268274 clone G11 small subunit prokMSA_id:087592 AY268298 clone C2 small subunit prokMSA_id:087403 AY268310 clone D3 small subunit prokMSA_id:087025 AY268323 clone H1 small subunit prokMSA_id:087617 AY278882 Sphingomonas sp. T2-16 prokMSA_id:087817 AY278887 Afipia sp. T2-20 prokMSA_id:087967 AY278934 Sphingomonas sp. TB33 prokMSA_id:087126 AY278942 Sphingomonas sp. TB44 prokMSA_id:089454 AY323180 alpha clone A114-9 prokMSA_id:091488 AY335448 Sphingomonas sp. clone Barl/4 prokMSA_id:091459 AY335450 Sphingomonas sp. clone Barl/2 prokMSA_id:091398 AY335454 Sphingomonas sp. clone B101/1 prokMSA_id:097511 AY394620 Sphingomonas sp. clone M9-13 prokMSA_id:006233 M83797 Caulobacter subvibrioides str. CB81. prokMSA_id:073419 U96454 Pseudomonas echinoides DSM1805 prokMSA_id:006237 X99988 str. from 1200 mbsl of lake Baikal Russia. 2.28.1.10.7 RHZ.SUBERIFACIENS_SUBGROUP 48 seqs 2.28.1.10.7.001 OTU 1 seq prokMSA_id:006258 U65908 clone Sar324. 2.28.1.10.7.002 OTU 1 seq prokMSA_id:006255 D13737 Rhizomonas suberifaciens IFO 15211 . 2.28.1.10.7.003 OTU 3 seqs prokMSA_id:019587 AF355038 delta Arctic95A-13 prokMSA_id:031338 AF355039 delta Arctic95C-5 prokMSA_id:020106 AF355041 delta Arctic96BD-3 2.28.1.10.7.004 OTU 1 seq prokMSA_id:055355 AB084247 Sphingomonas sp. Y2 2.28.1.10.7.005 OTU 1 seq prokMSA_id:064944 AY095800 Rhodobacter group CS4K-108 2.28.1.10.7.006 OTU 1 seq prokMSA_id:085152 AY254694 alpha SBR9-15/alpha1 2.28.1.10.7.007 OTU 1 seq prokMSA_id:086962 AY268301 clone E2 small subunit 2.28.1.10.7.999 poor quality 39 seqs prokMSA_id:064058 AB087311 clone:CF35 prokMSA_id:052629 AF010000 prokMSA_id:051258 AF078251 Grassland soil clone saf2_218 prokMSA_id:050516 AF078258 Grassland soil clone saf2_409 prokMSA_id:022935 AF078303 Grassland soil clone saf3_114 prokMSA_id:037484 AF078429 Grassland soil clone sl3_622 prokMSA_id:047671 AF078432 Grassland soil clone sl3_801 prokMSA_id:032413 AF078450 Grassland soil clone sl3_821 prokMSA_id:047442 AF114655 delta 400m-FREE-16 prokMSA_id:042148 AF257299 marine delta DHB-39 prokMSA_id:067978 AF365789 clone BM89PA1BbD8 prokMSA_id:060667 AF406448 delta clone AEGEAN_134_27F prokMSA_id:060666 AF406449 delta clone AEGEAN_273_27F prokMSA_id:060665 AF406450 delta clone AEGEAN_260_27F prokMSA_id:075880 AF431062 alpha clone N11.134WL prokMSA_id:037785 AF460885 Marine SIMO-IS121 prokMSA_id:058119 AF498701 Ellin319 prokMSA_id:058118 AF498702 Ellin320 prokMSA_id:021322 AJ006014 clone TRS1 prokMSA_id:023929 AJ132327 Rhizomonas sp. clone DDGE band A prokMSA_id:050453 AJ252583 Agricultural soil isolate SI-16 prokMSA_id:021869 AJ252584 Agricultural soil isolate SI-17 prokMSA_id:024736 AJ252595 Rhizosphere soil isolate RSI-28 prokMSA_id:089783 AJ574873 clone GR115-59 prokMSA_id:061474 AY043751 alpha clone SMW4.109WL prokMSA_id:065172 AY095590 delta PPO-2 prokMSA_id:065146 AY095659 delta OS2K-9 prokMSA_id:065015 AY095839 SAR324 cluster ARCT2-39 prokMSA_id:090226 AY289431 soil clone ABS-358 prokMSA_id:091044 AY335458 Sphingomonas sp. clone B101/7 prokMSA_id:091387 AY335467 Sphingomonas sp. clone TM/11 prokMSA_id:091329 AY335473 Sphingomonas sp. clone TM/12 prokMSA_id:098240 AY395206 alpha clone M01K prokMSA_id:006259 D28801 unnamed organism. prokMSA_id:006256 D84621 str. S23419. prokMSA_id:006257 D84626 str. S23435. prokMSA_id:006260 S57495 Rhizomonas suberifaciens str. CA1T. prokMSA_id:025124 U65909 clone Sar257 complete prokMSA_id:019483 U65910 clone Sar237 complete 2.28.1.10.8 ENVIRONMENTAL_CLONE_SMK270 1 seq 2.28.1.10.8.999 poor quality 1 seq prokMSA_id:006261 X78645 clone SMK270. 2.28.1.10.9 BLA.NATATORIA_SUBGROUP 47 seqs 2.28.1.10.9.003 OTU 17 seqs prokMSA_id:006266 AB002653 str. HTA473. prokMSA_id:006264 AB024288 Blastomonas natatoria DSM 3183 . prokMSA_id:006265 AB024289 Erythromonas ursincola str. KR-99 DSM 9006 . prokMSA_id:068724 AF479381 Glacial ice M3C1.8K-TD9 prokMSA_id:061834 AF529332 alpha clone CLi292 prokMSA_id:024967 AJ250434 Blastomonas natatoria strain 2.1 prokMSA_id:032905 AJ250435 Blastomonas natatoria strain 2.3 prokMSA_id:029641 AJ250436 Blastomonas natatoria strain 2.6 prokMSA_id:016382 AJ250437 Blastomonas natatoria strain 2.8 prokMSA_id:034654 AJ299222 Blastomonas natatoria strain 2.4 prokMSA_id:089025 AY328595 HOClCi46 prokMSA_id:089682 AY328605 HOClCi56 prokMSA_id:090141 AY328639 DSSF16 prokMSA_id:072160 U20772 Blastobacter sp. SMCC B0477 small subunit prokMSA_id:006268 X73043 Blastomonas natatoria ATCC 35951 . prokMSA_id:006262 Y10677 Erythromonas ursincola str. KR-99 DSM 9006 . prokMSA_id:006269 Y13774 Blastomonas natatoria DSM 3183 . 2.28.1.10.9.004 OTU 1 seq prokMSA_id:006263 AF170744 Erythromonas QSSC5-6 str. QSSC5-6. 2.28.1.10.9.005 OTU 1 seq prokMSA_id:019427 AF418947 clone HTB9 2.28.1.10.9.006 OTU 1 seq prokMSA_id:061114 AF530148 Alpha MGP-68 2.28.1.10.9.007 OTU 1 seq prokMSA_id:070851 AY145554 Alpha AP-17 2.28.1.10.9.008 OTU 1 seq prokMSA_id:079253 AY187319 clone csbio160392 2.28.1.10.9.009 OTU 1 seq prokMSA_id:084022 AY250869 alpha clone FBP255 2.28.1.10.9.010 OTU 1 seq prokMSA_id:085452 AY250878 alpha clone FBP380 2.28.1.10.9.999 poor quality 23 seqs prokMSA_id:085617 AB107158 Alpha K-2059 parital prokMSA_id:069223 AF078443 Grassland soil clone sl3_812 prokMSA_id:071643 AF078452 Grassland soil clone sl3_823 prokMSA_id:046261 AF141530 alpha clone CRE-PA52 prokMSA_id:020637 AF141531 alpha clone CRE-PA53 prokMSA_id:019079 AF226222 maize root Zmrc19 prokMSA_id:068042 AF365705 clone BT60DS1BE11 prokMSA_id:039580 AF429255 clone CR99-2-69 prokMSA_id:044495 AF442015 clone CD12H10 prokMSA_id:051870 AF446303 alpha FL13A04 prokMSA_id:056015 AF493283 clone pHS13 prokMSA_id:071707 AF530273 Blastobacter sp. S7-18 prokMSA_id:069592 AF532054 alpha clone 3607bR-48 prokMSA_id:026000 AJ309985 Sphingomonas sp. dtb194 prokMSA_id:024286 AJ315693 Alpha ML35 strain ML35 prokMSA_id:020079 AJ315694 Alpha ML20 strain ML20 prokMSA_id:056848 AJ518759 clone Sai4P3-95 prokMSA_id:026320 AY055090 clone B6 prokMSA_id:075613 AY157087 alpha isolate WB-66 prokMSA_id:080617 AY192243 alpha clone W1-2B prokMSA_id:097388 AY395133 clone D10ST prokMSA_id:006267 U20772 Sphingomonas sp. str. B477. prokMSA_id:006270 X84571 str. SBR2032. 2.28.1.10.10 ENVIRONMENTAL_CLONE_PAD23 1 seq 2.28.1.10.10.999 poor quality 1 seq prokMSA_id:006271 D26210 soil from paddy field clone PAD23. 2.28.1.10.11 SPG.SUBARCTICA_SUBGROUP 294 seqs 2.28.1.10.11.003 OTU 2 seqs prokMSA_id:006299 AB017110 str. MBIC1549. prokMSA_id:031470 AF361178 Sphingomonas sp. Pee Shoal 2.28.1.10.11.004 OTU 3 seqs prokMSA_id:006298 AJ223450 str. 2a. prokMSA_id:038548 AJ416411 Novosphingobium hassiacum prokMSA_id:006292 Z93995 clone T28. 2.28.1.10.11.008 OTU 1 seq prokMSA_id:006295 AF170734 Sphingomonas QSSC1-14 str. QSSC1-14. 2.28.1.10.11.009 OTU 1 seq prokMSA_id:006294 U90216 Sphingomonas 2MPII. 2.28.1.10.11.011 OTU 1 seq prokMSA_id:006291 AB025720 Sphingomonas MBIC1965 str. MBIC1965. 2.28.1.10.11.012 OTU 1 seq prokMSA_id:006290 AJ001052 Sphingomonas B28161 str. B28161. 2.28.1.10.11.014 OTU 15 seqs prokMSA_id:006287 AB023290 Sphingomonas sp. str. MBIC4193. prokMSA_id:006296 AB025013 Sphingomonas stygia IFO 16085. prokMSA_id:023579 AB074687 Alpha D-St0-8A prokMSA_id:036544 AB074742 Alpha S-St1-8B prokMSA_id:048573 AB074743 Alpha S-St1-8C prokMSA_id:028794 AF235996 Alpha F06021 prokMSA_id:037092 AJ000920 Novosphingobium sp. K16 strain K16 prokMSA_id:031884 AJ009707 Novosphingobium sp. K39 prokMSA_id:006297 AJ224989 str. from Lake Gossenkoellesee. prokMSA_id:051683 AJ289994 FukuN22 prokMSA_id:052593 AJ303009 Sphingomonas sp. MT1 prokMSA_id:095288 AJ575708 alpha clone NE46 prokMSA_id:098472 AJ575710 alpha clone NE73 prokMSA_id:081441 AY192044 alpha clone G80-GM4R prokMSA_id:044107 U20775 Sphingomonas stygialis SMCC B0712 small subunit 2.28.1.10.11.015 OTU 1 seq prokMSA_id:006281 Z93996 clone T29. 2.28.1.10.11.019 OTU 1 seq prokMSA_id:017742 AJ292599 WD249 clone WD249 2.28.1.10.11.020 OTU 1 seq prokMSA_id:018607 AB070237 Novosphingomonas sp. ARI-1 2.28.1.10.11.021 OTU 4 seqs prokMSA_id:047097 AY038700 clone TAF-B60 prokMSA_id:036278 AY038701 clone TAF-B63 prokMSA_id:072186 AY145549 Alpha AP-10 prokMSA_id:070415 AY145550 Alpha AP-11 2.28.1.10.11.022 OTU 1 seq prokMSA_id:021583 AF097802 clone 1958 2.28.1.10.11.024 OTU 1 seq prokMSA_id:024166 AB074191 Sphingomonas sp. HL7 2.28.1.10.11.025 OTU 2 seqs prokMSA_id:027641 AF414578 clone P3OU-7 prokMSA_id:034912 AJ344198 isolate BUG-221 2.28.1.10.11.026 OTU 1 seq prokMSA_id:027806 AJ307937 mRNA clone sipK17 2.28.1.10.11.027 OTU 2 seqs prokMSA_id:030174 AB074740 Alpha S-St1-6C prokMSA_id:045467 AF235994 Alpha F0917 2.28.1.10.11.028 OTU 7 seqs prokMSA_id:022564 AJ290014 FukuS56 prokMSA_id:036069 AJ292613 WD2119 clone WD2119 prokMSA_id:017730 AJ292621 WD2110 clone WD2110 prokMSA_id:098141 AJ575704 alpha clone SW32 prokMSA_id:098812 AJ575705 alpha clone SW22 prokMSA_id:097631 AJ575706 alpha clone SW65 prokMSA_id:098564 AJ575709 alpha clone NE69 2.28.1.10.11.029 OTU 12 seqs prokMSA_id:036281 AB064271 Sphingomonas sp. KA1 prokMSA_id:078207 AB074642 alpha clone:APe9_4 prokMSA_id:006293 AF025352 Sphingomonas D16 str. D16. prokMSA_id:028703 AF190212 Alpha RSHD3S16 prokMSA_id:071360 AF434172 Sphingomonas sp. AV6C prokMSA_id:057342 AY151394 Novosphingobium subarcticum prokMSA_id:077528 AY167828 Novosphingomonas subarcticum strain SAFR-035 prokMSA_id:092479 AY344805 Sphingomonas sp. WSCII prokMSA_id:006276 U37347 Sphingomonas sp. str. UN1P1. prokMSA_id:006274 X94102 Sphingomonas subarctica str. KF1 . prokMSA_id:006289 X94103 Sphingomonas subarctica str. KF3. prokMSA_id:006302 X94104 Sphingomonas subarctica str. NKF1. 2.28.1.10.11.030 OTU 1 seq prokMSA_id:037143 AF417907 antarctic soil clone bh4.32 2.28.1.10.11.031 OTU 1 seq prokMSA_id:038923 AF432337 alpha 4%N-26d-5 2.28.1.10.11.032 OTU 5 seqs prokMSA_id:063931 AF424278 alpha MERTZ_2CM_339 prokMSA_id:045440 AF425761 alpha clone MERTZ_0CM_76 prokMSA_id:080924 AF468381 Arctic sea ice ARK9996 prokMSA_id:083904 AJ441010 Antarctic R-9221 strain R-9221 prokMSA_id:073289 AY007681 Unknown marine alpha JP63.1 2.28.1.10.11.033 OTU 1 seq prokMSA_id:039607 AJ292614 WD203 clone WD203 2.28.1.10.11.034 OTU 1 seq prokMSA_id:039863 AF411072 Sphingomonas sp. ACM-3962 2.28.1.10.11.035 OTU 2 seqs prokMSA_id:040275 AB074718 Alpha D-A2-9 prokMSA_id:052854 AB074741 Alpha S-St1-7D1 2.28.1.10.11.036 OTU 1 seq prokMSA_id:048962 AJ252582 Agricultural soil isolate SI-15 2.28.1.10.11.037 OTU 1 seq prokMSA_id:052205 AJ318120 alpha clone BIfcii31 2.28.1.10.11.038 OTU 1 seq prokMSA_id:069624 AY145559 Alpha AP-22 2.28.1.10.11.039 OTU 1 seq prokMSA_id:060857 AY135918 clone SG2-108 2.28.1.10.11.040 OTU 1 seq prokMSA_id:064588 AF467387 alpha clone 1526 2.28.1.10.11.041 OTU 1 seq prokMSA_id:064891 AY095893 alpha pT-436 2.28.1.10.11.042 OTU 1 seq prokMSA_id:065432 AF513088 clone 15 2.28.1.10.11.043 OTU 1 seq prokMSA_id:065893 AF507429 soil clone C0129 2.28.1.10.11.044 OTU 1 seq prokMSA_id:066480 AY100611 clone cvf70098 2.28.1.10.11.045 OTU 1 seq prokMSA_id:072153 AJ318165 alpha clone BIrii13 2.28.1.10.11.046 OTU 1 seq prokMSA_id:077053 AJ534621 alpha clone JG36-TzT-207 2.28.1.10.11.047 OTU 1 seq prokMSA_id:077860 AB074639 alpha clone:APe9_8 2.28.1.10.11.048 OTU 1 seq prokMSA_id:077937 AB076396 Sphingomonas sp. IW3 2.28.1.10.11.049 OTU 1 seq prokMSA_id:078821 AB088760 Novosphingobium sp. J30 2.28.1.10.11.050 OTU 2 seqs prokMSA_id:079257 AY187318 clone csbio160333 prokMSA_id:079320 AY187362 clone csbio160194 2.28.1.10.11.051 OTU 1 seq prokMSA_id:079611 AF468353 Arctic sea ice ARK10016 2.28.1.10.11.052 OTU 1 seq prokMSA_id:082573 AF499911 clone ABLCf85 2.28.1.10.11.053 OTU 1 seq prokMSA_id:086746 AY278909 Sphingomonas sp. T5-15 2.28.1.10.11.054 OTU 1 seq prokMSA_id:087039 AY268346 clone H11 small subunit 2.28.1.10.11.055 OTU 1 seq prokMSA_id:087950 AY268329 clone H1 small subunit 2.28.1.10.11.058 OTU 1 seq prokMSA_id:088841 AY328822 Drinking water Y19 2.28.1.10.11.059 OTU 33 seqs prokMSA_id:006285 AB025012 Sphingomonas aromaticivorans IFO 16084. prokMSA_id:006286 AB025014 Sphingomonas subterranea IFO 16086. prokMSA_id:025733 AB074691 Alpha D-St1-4 prokMSA_id:038095 AB074693 Alpha D-St1-8D prokMSA_id:006279 AJ001051 Sphingomonas A28241 str. A28241. prokMSA_id:006280 AJ001053 Sphingomonas C28242 str. C28242. prokMSA_id:060297 AY129784 Sphingomonas sp. clone GCPF8 prokMSA_id:076196 AY159203 RO_isolate_2 prokMSA_id:083606 AY250854 alpha clone BPS147 prokMSA_id:090301 AY328703 DSSD3 prokMSA_id:089212 AY328714 DSSD15 prokMSA_id:089154 AY328717 DSSD18 prokMSA_id:089700 AY328739 DSSD40 prokMSA_id:089574 AY328745 DSSD47 prokMSA_id:088497 AY328758 DSSD60 prokMSA_id:090233 AY328762 DSSD64 prokMSA_id:088665 AY328785 DSSD88 prokMSA_id:090483 AY328788 DSSD91 prokMSA_id:090739 AY328794 DSSD97 prokMSA_id:090122 AY328806 Drinking water OR21 prokMSA_id:088735 AY328819 Drinking water Y16 prokMSA_id:088359 AY328820 Drinking water Y17 prokMSA_id:090009 AY328821 Drinking water Y18 prokMSA_id:090554 AY328849 Drinking water MB27 prokMSA_id:096580 AY375099 clone C7 prokMSA_id:098576 AY375102 clone C74 prokMSA_id:006278 D16147 Sphingomonas capsulata GIFU 11526. prokMSA_id:006275 U20755 Sphingomonas sp. str. B695. prokMSA_id:073612 U20755 Sphingomonas aromaticivorans SMCC B0695 small subunit prokMSA_id:006301 U20756 Sphingomonas sp. str. F199. prokMSA_id:074445 U20756 Sphingomonas aromaticivorans SMCC F199 small subunit prokMSA_id:070921 U20773 Sphingomonas subterraneae SMCC B0478 small subunit prokMSA_id:070401 U20774 Sphingomonas aromaticivorans SMCC B0522 small subunit 2.28.1.10.11.060 OTU 1 seq prokMSA_id:089388 AY328824 Drinking water Y23 2.28.1.10.11.062 OTU 3 seqs prokMSA_id:088603 AY328805 Drinking water OR18 prokMSA_id:089640 AY328807 Drinking water OR23 prokMSA_id:090016 AY328817 Drinking water Y14 2.28.1.10.11.063 OTU 1 seq prokMSA_id:091326 AF502400 Novosphingobium sp. US6-1 2.28.1.10.11.064 OTU 1 seq prokMSA_id:092490 AY349411 Sphingomonas sp. oral clone FI012 2.28.1.10.11.065 OTU 1 seq prokMSA_id:095433 AY375131 clone F78 2.28.1.10.11.066 OTU 1 seq prokMSA_id:096109 AY375111 clone F13 2.28.1.10.11.067 OTU 1 seq prokMSA_id:096520 AY375108 clone F10 2.28.1.10.11.068 OTU 1 seq prokMSA_id:097323 AY375110 clone F12 2.28.1.10.11.069 OTU 1 seq prokMSA_id:097938 AJ575707 alpha clone NE41 2.28.1.10.11.999 poor quality 160 seqs prokMSA_id:076178 AB075056 clone:KCS18 prokMSA_id:075654 AB075057 clone:KCS19 prokMSA_id:075121 AB075099 clone:KSS14 prokMSA_id:064063 AB087304 clone:CF26 prokMSA_id:084995 AB097979 Alpha ANRB2-5 prokMSA_id:086672 AB097983 Alpha ANRB3-2 prokMSA_id:084177 AB097999 Alpha ANRB18-4 prokMSA_id:086010 AB098014 Alpha ANRW11-2 prokMSA_id:083786 AB098021 Alpha ANRW20-7 prokMSA_id:085679 AB107140 Alpha K-2034a parital prokMSA_id:083128 AB107143 Alpha K-2036 parital prokMSA_id:018509 AF078309 Grassland soil clone saf3_121 prokMSA_id:051495 AF121901 Aquatic RUB_R2A_19 prokMSA_id:071076 AF125110 Aquatic RUB_R2A_56 prokMSA_id:025102 AF126922 alpha clone c7 prokMSA_id:018541 AF126933 alpha clone c8 prokMSA_id:023253 AF141567 clone CRO-18 prokMSA_id:074607 AF173973 Sphingomonas subarctica prokMSA_id:021141 AF182019 Sphingomonas sp. BAL10 prokMSA_id:028424 AF283649 Sphingomonas sp. 1-21 prokMSA_id:039042 AF296227 SE-21 prokMSA_id:033704 AF316779 Crater Lake CL0-92 prokMSA_id:042712 AF316780 Crater Lake CL500-30 prokMSA_id:030057 AF337211 clone LCo75 prokMSA_id:040209 AF353700 Sphingomonas sp. PR-P12 prokMSA_id:026607 AF379686 clone SL11 prokMSA_id:017400 AF392622 clone CRF3 prokMSA_id:045525 AF424749 Sphingomonas sp. clone M4rb5 prokMSA_id:028404 AF428595 clone CRD99-17 prokMSA_id:047727 AF428614 clone CRD99-36 prokMSA_id:022675 AF428764 clone CR98-5-34 prokMSA_id:022512 AF428765 clone CR98-5-35 prokMSA_id:043844 AF428789 clone CR98-5-59 prokMSA_id:037499 AF428806 clone CR98-5-76 prokMSA_id:039407 AF428810 clone CR98-24-04 prokMSA_id:028603 AF428861 clone CR98-24-55 prokMSA_id:035516 AF428877 clone CR98-24-71 prokMSA_id:033019 AF428896 clone CR98-35-14 prokMSA_id:041597 AF428914 clone CR98-35-32 prokMSA_id:035722 AF429038 clone CR99-7-04 prokMSA_id:035005 AF429049 clone CR99-7-15 prokMSA_id:028113 AF429107 clone CR99-7-73 prokMSA_id:036740 AF429123 clone CR99-24-13 prokMSA_id:017512 AF429215 clone CR99-2-29 prokMSA_id:061235 AF432665 clone NOS7.163WL prokMSA_id:042847 AF460915 Marine SIMO-IS134 prokMSA_id:040096 AF460917 Marine SIMO-IS136 prokMSA_id:016459 AF460921 Marine SIMO-IS140 prokMSA_id:027772 AF460940 Marine SIMO-IS160 prokMSA_id:029906 AF460951 Marine SIMO-IS210 prokMSA_id:026029 AF460960 Marine SIMO-IS219 prokMSA_id:022381 AF473954 alpha A190-16 prokMSA_id:060497 AF488647 Alpha Z12 prokMSA_id:058040 AF488654 Alpha Z19 prokMSA_id:060489 AF488655 Alpha Z20 prokMSA_id:066439 AF497877 alpha isolate WL5-2 prokMSA_id:070606 AF497882 alpha isolate WL11-11 prokMSA_id:066432 AF497883 alpha isolate WL8-22B prokMSA_id:065892 AF507428 soil clone C0117 prokMSA_id:065656 AF507734 soil clone S162 prokMSA_id:070659 AF530926 Alpha sj46 prokMSA_id:071311 AF530931 Alpha sj66 prokMSA_id:070166 AF530933 Alpha wj05 prokMSA_id:073638 AF530936 Alpha wj11 prokMSA_id:071556 AF530939 Alpha wj27 prokMSA_id:074039 AF530940 Alpha wj30 prokMSA_id:074092 AF530941 Alpha wj33 prokMSA_id:073598 AF530946 Alpha zj03 prokMSA_id:069412 AF530950 Alpha zj08 prokMSA_id:069272 AF530964 Alpha zj94 prokMSA_id:073325 AF530972 Alpha so16 prokMSA_id:069394 AF530983 Alpha wo05 prokMSA_id:070868 AF530986 Alpha wo20 prokMSA_id:056003 AF530993 Alpha wo41 prokMSA_id:069768 AF530996 Alpha wo54 prokMSA_id:074410 AF530999 Alpha zo08 prokMSA_id:073839 AF531000 Alpha zo12 prokMSA_id:069752 AF531008 Alpha zo37 prokMSA_id:069157 AF531019 Alpha Mso1 prokMSA_id:076130 AF550595 Sphingomonas sp. clone LiUU-1-5b prokMSA_id:051344 AJ232818 clone LBS1 prokMSA_id:035435 AJ233473 clone WR117 prokMSA_id:043668 AJ233490 clone WR190 prokMSA_id:025700 AJ233493 clone WR1102 prokMSA_id:051217 AJ233502 clone WR1126 prokMSA_id:032212 AJ233507 clone WR1143 prokMSA_id:023284 AJ239997 alpha strain DGGE band CIBAC-10 prokMSA_id:073975 AJ290050 FukuS182 prokMSA_id:029819 AJ292620 WD241 clone WD241 prokMSA_id:043805 AJ292804 WR815 clone WR815 prokMSA_id:030064 AJ292806 WR822 clone WR822 prokMSA_id:041227 AJ292809 WR829 clone WR829 prokMSA_id:021400 AJ292825 WR898 clone WR898 prokMSA_id:024979 AJ292832 WR8138 clone WR8138 prokMSA_id:045584 AJ292834 WR8146 clone WR8146 prokMSA_id:039452 AJ292835 WR8151 clone WR8151 prokMSA_id:051625 AJ292838 WR8162 clone WR8162 prokMSA_id:019046 AJ292839 WR8163 clone WR8163 prokMSA_id:022185 AJ292846 WR878 clone WR878 prokMSA_id:072311 AJ296589 DGGE band PSBAC-9 prokMSA_id:073735 AJ311962 alpha strain OS-206 prokMSA_id:047048 AJ344201 isolate BUG-171 prokMSA_id:072553 AJ419649 clone R29 prokMSA_id:076138 AJ428152 isolate band i-b9 prokMSA_id:080097 AJ437123 clone k12-01 prokMSA_id:080584 AJ437134 clone lf6-01 prokMSA_id:073338 AJ504480 isolate P1CN09 prokMSA_id:062607 AJ504512 isolate P1CN51 prokMSA_id:057221 AJ518279 clone Mul2P3-24 prokMSA_id:088930 AJ574853 clone GR115-21 prokMSA_id:090157 AJ574857 clone GR115-52 prokMSA_id:089163 AJ574864 clone GR115-15 prokMSA_id:089743 AJ574867 clone GR115-2 prokMSA_id:090467 AJ574870 clone GR115-25 prokMSA_id:089725 AJ574871 clone GR115-64 prokMSA_id:088906 AJ574875 clone GR115-14 prokMSA_id:092502 AJ580653 clone NN325-26 prokMSA_id:093082 AJ580655 clone NN325-20 prokMSA_id:092359 AJ580656 clone NN325-39 prokMSA_id:092720 AJ580664 clone NN325-3 prokMSA_id:092983 AJ580668 clone NN325-64 prokMSA_id:074195 AY135479 Sphingomonas sp. S5-42 prokMSA_id:069586 AY145595 alpha clone DC8-0-1 prokMSA_id:094123 AY145862 alpha isolate DGGE band REA42 prokMSA_id:094060 AY145873 alpha isolate DGGE band RWA32 prokMSA_id:093386 AY145879 alpha isolate DGGE band RWA52 prokMSA_id:056816 AY149773 alpha SIMO CL-S29-8 prokMSA_id:056800 AY149796 alpha SIMO CL-S29-36 prokMSA_id:056792 AY149806 alpha SIMO CL-S29-47 prokMSA_id:076956 AY157083 alpha isolate WB-64 prokMSA_id:076009 AY157110 alpha isolate HS-71 prokMSA_id:076360 AY157130 alpha isolate PG-72 prokMSA_id:081853 AY187424 clone SA69 prokMSA_id:079982 AY193106 clone DA59 prokMSA_id:081906 AY193922 clone SB34 prokMSA_id:086413 AY232825 Sphingomonas sp. PXM prokMSA_id:087943 AY278891 Sphingomonas sp. T2-24 prokMSA_id:087708 AY278932 Sphingomonas sp. TB31 prokMSA_id:088707 AY323153 alpha clone A133-69 prokMSA_id:089701 AY323178 alpha clone A114-4 prokMSA_id:090723 AY323181 alpha clone A114-10 prokMSA_id:089031 AY328811 Drinking water OR31 prokMSA_id:089446 AY328813 Drinking water Y5 prokMSA_id:089332 AY328818 Drinking water Y15 prokMSA_id:091722 AY335474 Sphingomonas sp. clone TM/8 prokMSA_id:091630 AY335477 Sphingomonas sp. clone TM/5 prokMSA_id:097879 AY391687 soil clone M71 prokMSA_id:006300 D13945 Sphingomonas rosa IFO 15208 . prokMSA_id:006282 D84598 str. S23301. prokMSA_id:006283 D84601 str. S23306. prokMSA_id:006284 D84627 str. S23436. prokMSA_id:006272 L13132 str. B274. prokMSA_id:006303 M59296 Sphingomonas capsulata ATCC 14666 . prokMSA_id:006273 S56775 Sphingomonas capsulata LMG 2830 . prokMSA_id:006288 U20773 Sphingomonas sp. str. B478. prokMSA_id:006277 U20774 Sphingomonas sp. str. B522. prokMSA_id:023384 U45701 activated sludge CL04 prokMSA_id:046720 U63958 Sphingomonas sp. BAL44 prokMSA_id:046221 Z82963 sp. clone group T6BC prokMSA_id:030220 Z82964 sp. clone group T7B 2.28.1.10.12 SPG.MACROGOLTABIDUS_SUBGROUP 147 seqs 2.28.1.10.12.007 OTU 1 seq prokMSA_id:006321 AB015577 str. BD7-1. 2.28.1.10.12.008 OTU 1 seq prokMSA_id:006320 D13727 Sphingomonas terrae str. E-1-A IFO 15098 . 2.28.1.10.12.009 OTU 1 seq prokMSA_id:006315 AF146635 Sphingomonas PM1 str. PM1. 2.28.1.10.12.011 OTU 1 seq prokMSA_id:016401 AF422605 clone t035 2.28.1.10.12.014 OTU 1 seq prokMSA_id:019931 AF469398 clone 33-PA77B00 2.28.1.10.12.015 OTU 3 seqs prokMSA_id:056416 AF328160 clone KS4 prokMSA_id:037060 AF328165 clone KS11 prokMSA_id:021569 AF328172 clone KS21 2.28.1.10.12.018 OTU 1 seq prokMSA_id:026262 AB076083 Alpha 7CY 2.28.1.10.12.022 OTU 1 seq prokMSA_id:029325 AF235997 Alpha F0813 2.28.1.10.12.023 OTU 1 seq prokMSA_id:030404 AF328163 clone KS8 2.28.1.10.12.025 OTU 1 seq prokMSA_id:031770 AJ318150 alpha clone BIji26 2.28.1.10.12.026 OTU 1 seq prokMSA_id:032470 AF414579 clone P3OU-37 2.28.1.10.12.027 OTU 1 seq prokMSA_id:032740 AF469407 clone 33-FL50B00 2.28.1.10.12.028 OTU 1 seq prokMSA_id:055502 AF506050 Sphingomonas sp. LCSAOTU29 2.28.1.10.12.031 OTU 30 seqs prokMSA_id:006329 AB015049 Sphingomonas sp. str. MBIC3365. prokMSA_id:006326 AB022601 Sphingomonas KT-1 str. KT-1. prokMSA_id:044192 AB033950 Sphingomonas sp. strain:IFO 15917 prokMSA_id:006328 AF131297 Sphingomonas JSS-54 str. JSS-54. prokMSA_id:054257 AF145752 Sphingomonas alaska strain RB255 prokMSA_id:019973 AF145753 Sphingomonas alaska strain RB2515 prokMSA_id:072044 AF145754 Sphingomonas alaska strain RB2510 prokMSA_id:074035 AF181572 Sphingomonas sp. JRL-5 prokMSA_id:031367 AF327069 Sphingomonas sp. SA-3 prokMSA_id:066835 AF367204 Sphingomonas sp. S37 prokMSA_id:042377 AF378795 Sphingomonas alaskensis strain RB2256 prokMSA_id:040084 AF378796 Sphingomonas alaskensis strain AF01 prokMSA_id:060721 AF532188 Monochloroacetic-acid-degrading MCAA3 prokMSA_id:029380 AJ299225 Sphingomonas sp. 2.10 strain 2.10 prokMSA_id:036627 AJ299227 Sphingomonas sp. 2.12 strain 2.12 prokMSA_id:017388 AJ299228 Sphingomonas sp. 2.15 strain 2.15 prokMSA_id:047946 AJ299229 Sphingomonas sp. 2.18 strain 2.18 prokMSA_id:045857 AJ416410 Sphingopyxis witflariensis prokMSA_id:083641 AJ557858 Marine arctic deep-sea FD10 prokMSA_id:068620 AY081981 clone KRA30+14 prokMSA_id:059190 AY136080 Sphingomonas sp. KIN84 prokMSA_id:078445 AY177357 Phenanthrene-degrading M20 prokMSA_id:079081 AY177366 Sphingomonas sp. 86 prokMSA_id:092009 AY337601 Sphingopyxis alaskensis prokMSA_id:006313 D13722 Sphingomonas adhaesiva IFO 15099 . prokMSA_id:006325 D13723 Sphingomonas macrogoltabidus str. 203 IFO 15033 . prokMSA_id:052193 D84530 Sphingomonas macrogoltabidus prokMSA_id:006306 U11041 str. RB2256. prokMSA_id:026871 X99989 sp. clone 1200-9 prokMSA_id:006327 Z73631 Sphingomonas sp. str. RB2256. 2.28.1.10.12.033 OTU 7 seqs prokMSA_id:040666 AF321036 Zymomonas sp. GOBB3-C201 prokMSA_id:060514 AF410927 Sphingomonas sp. B18 prokMSA_id:050200 AY038702 clone TAF-B92 prokMSA_id:069966 AY145544 Alpha AP-6 prokMSA_id:069828 AY145545 Alpha AP-7 prokMSA_id:072895 AY145546 Alpha AP-8 prokMSA_id:070814 AY145547 Alpha AP-9-1 2.28.1.10.12.034 OTU 1 seq prokMSA_id:060278 AY129811 Sphingomonas sp. clone GCPF46 2.28.1.10.12.035 OTU 1 seq prokMSA_id:061110 AF530152 Alpha MGP-83 2.28.1.10.12.036 OTU 1 seq prokMSA_id:066292 AF506048 Sphingomonas sp. LCSAOTU17 2.28.1.10.12.037 OTU 1 seq prokMSA_id:079146 AY187363 clone csbio160223 2.28.1.10.12.038 OTU 1 seq prokMSA_id:079271 AY187317 clone csbio160302 2.28.1.10.12.039 OTU 2 seqs prokMSA_id:079949 AY193246 clone Bol49 prokMSA_id:079649 AY193253 clone Bol62 2.28.1.10.12.040 OTU 1 seq prokMSA_id:079888 AB094853 clone:OHKB4.54 2.28.1.10.12.041 OTU 1 seq prokMSA_id:080942 AY193247 candidate division OD1 clone Bol54 2.28.1.10.12.042 OTU 1 seq prokMSA_id:081691 AY212804 Sphingomonas sp. EVA17 2.28.1.10.12.043 OTU 1 seq prokMSA_id:088816 AY328850 Drinking water MB28 2.28.1.10.12.044 OTU 1 seq prokMSA_id:089712 AY328823 Drinking water Y20 2.28.1.10.12.045 OTU 1 seq prokMSA_id:090065 AY328581 HOClCi32 2.28.1.10.12.046 OTU 1 seq prokMSA_id:093711 AJ582032 alpha clone JG36-GS-121 2.28.1.10.12.999 poor quality 81 seqs prokMSA_id:051188 AB010598 clone ASB003 prokMSA_id:091434 AB101552 Sphingomonas sp. GF9 prokMSA_id:091917 AB101563 Sphingomonas sp. GF20 prokMSA_id:091879 AB101565 Sphingomonas sp. GF22 prokMSA_id:085896 AB107147 Alpha K-2042 parital prokMSA_id:084296 AB107153 Alpha K-2055 parital prokMSA_id:093672 AB118675 Alpha C-15 strain:C-15 prokMSA_id:020362 AF078198 Grassland soil clone saf1_202 prokMSA_id:006330 AF148812 Sphingomonas RB2256 str. RB2256. prokMSA_id:030305 AF176860 24-D-degrading 524 prokMSA_id:068968 AF314459 PHOS-HE71 prokMSA_id:069045 AF320957 Lake Michigan sediment LMBA42 prokMSA_id:071414 AF320963 Lake Michigan sediment LMBA51 prokMSA_id:036847 AF337831 copper smeltery D63 prokMSA_id:035510 AF337832 copper smeltery D64 prokMSA_id:068084 AF365659 clone BM89DS6BbC11 prokMSA_id:067976 AF365790 clone BM89PA1BbE10 prokMSA_id:043249 AF388358 clone Ac36 prokMSA_id:029887 AF429199 clone CR99-2-13 prokMSA_id:075074 AF431093 alpha clone C17.43WL prokMSA_id:066646 AF432250 Sphingomonas sp. Ellin426 prokMSA_id:019109 AF432340 alpha 4%N-26d-12 prokMSA_id:060493 AF488649 Alpha Z14 prokMSA_id:060494 AF488650 Alpha Z15 prokMSA_id:058133 AF498684 Ellin302 prokMSA_id:064375 AF517124 Sphingomonas sp. 2A prokMSA_id:056449 AF522918 clone 1g4 prokMSA_id:058802 AF540047 alpha DGGE gel band ESR BR 12 prokMSA_id:033814 AH010356 Lake Michigan sediment LMBA51 and genes prokMSA_id:032061 AJ011014 Sphingomonas sp. TFA prokMSA_id:019258 AJ299226 Sphingomonas sp. 2.11 strain 2.11 prokMSA_id:043535 AJ299581 Sphingomonas sp. CZ7 isolate CZ7 prokMSA_id:087572 AJ561142 alpha clone ANT-RB 10 prokMSA_id:087432 AJ561155 alpha clone RB_OIL 07 prokMSA_id:086829 AJ561190 Alpha GA-35 isolate GA-35 prokMSA_id:061459 AY043771 alpha clone SMS9.109WL prokMSA_id:063023 AY122601 clone OSS-11 prokMSA_id:069280 AY144206 alpha clone LTUA06714 prokMSA_id:075017 AY150928 alpha clone uv26 prokMSA_id:075075 AY150936 alpha clone uv14a prokMSA_id:076872 AY150946 alpha clone uv84 prokMSA_id:079481 AY186818 alpha clone uv26 prokMSA_id:079571 AY186826 alpha clone uv14a prokMSA_id:079202 AY186836 alpha clone uv84 prokMSA_id:080014 AY190140 Sphingopyxis sp. S29 prokMSA_id:080611 AY190144 Sphingopyxis sp. S25 prokMSA_id:080633 AY190145 Sphingopyxis witflariensis strain S11 prokMSA_id:080538 AY190146 Sphingopyxis witflariensis strain S15 prokMSA_id:079988 AY190147 Sphingopyxis sp. S1 prokMSA_id:080155 AY193255 clone Bol69 prokMSA_id:082771 AY239005 Marine HP18 prokMSA_id:090583 AY289408 soil clone ABS-183 prokMSA_id:088712 AY289409 soil clone ABS-12 prokMSA_id:091133 AY335455 Sphingomonas sp. clone B101/2 prokMSA_id:093398 AY364035 alpha clone cRI3c prokMSA_id:094168 AY364079 alpha clone cRI49d prokMSA_id:094118 AY364081 alpha clone cRI54d prokMSA_id:094622 AY369143 clone F-OTU3 prokMSA_id:094682 AY369163 clone T-OTU7 prokMSA_id:017602 D84531 Sphingomonas terrae prokMSA_id:006312 L13134 str. B615. prokMSA_id:006331 L13139 str. B707. prokMSA_id:006332 L13141 str. B712. prokMSA_id:006323 L13142 str. B713. prokMSA_id:006309 U58351 str. L-86. prokMSA_id:006308 U58352 str. L-87. prokMSA_id:041831 U63956 Sphingomonas sp. prokMSA_id:050071 U63998 Sphingomonas sp. prokMSA_id:006314 U85838 Sphingomonas sp. str. SW54. prokMSA_id:053739 U87505 marine 3' prokMSA_id:006322 X84462 str. SBR1018. prokMSA_id:006316 X84488 str. SBR1045. prokMSA_id:006317 X84530 str. SBR1103. prokMSA_id:006318 X84533 str. SBR1106. prokMSA_id:006304 X84535 str. SBR1109. prokMSA_id:006310 X84536 str. SBR1110. prokMSA_id:006324 X84561 str. SBR2017. prokMSA_id:006305 X84564 str. SBR2021. prokMSA_id:006319 X84591 str. SBR2056. prokMSA_id:006311 Z69274 clone JN9c. prokMSA_id:006307 Z69328 str. s24. 2.28.1.10.13 ERB.LONGUS_SUBGROUP 226 seqs 2.28.1.10.13.011 OTU 92 seqs prokMSA_id:006353 AB002654 str. HTA456. prokMSA_id:058405 AB008814 Alpha MBIC3030 prokMSA_id:058404 AB008815 Alpha MBIC3035 prokMSA_id:058400 AB008816 Erythrobacter sp. MBIC3031 prokMSA_id:006338 AB011075 Erythrobacter sp. str. Re1. prokMSA_id:006336 AB012061 str. MBIC2351. prokMSA_id:006337 AB012062 Erythrobacter MBIC3019 str. MBIC3019. prokMSA_id:006360 AB013354 Erythrobacter litoralis str. T431-1187 DSM 8509 . prokMSA_id:006348 AB013355 Erythromicrobium ramosum. prokMSA_id:006345 AB016518 Porphyrobacter MBIC3897 str. MBIC3897. prokMSA_id:006354 AB017113 str. MBIC2280. prokMSA_id:006339 AB017812 str. MBIC3953. prokMSA_id:006340 AB017813 str. MBIC3952. prokMSA_id:006362 AB019044 str. MBIC1402. prokMSA_id:006351 AB021493 IAM 12620. prokMSA_id:006352 AB022015 Porphyrobacter MBIC3936 str. MBIC3936. prokMSA_id:006343 AB033325 Porphyrobacter KK348 str. KK348. prokMSA_id:006361 AB033326 Porphyrobacter KK351 str. KK351. prokMSA_id:006350 AB033327 Porphyrobacter neustonensis DSM 9434. prokMSA_id:006344 AB033328 Porphyrobacter tepidarius str. OT3 DSM 10594 . prokMSA_id:029655 AB035544 Erythrobacter sp. MBIC4117 prokMSA_id:033344 AB035545 Erythrobacter sp. MBIC4118 prokMSA_id:024395 AB062105 Agrobacterium sanguineum strain:ATCC 25660 prokMSA_id:039689 AB062106 Agrobacterium sanguineum strain:ATCC 25661 prokMSA_id:078562 AB094461 Erythrobacter sp. 2216.25.25 prokMSA_id:081820 AB105441 clone:A-6 prokMSA_id:006363 AF118020 Erythromicrobium RE35F/1 str. RE35F/1. prokMSA_id:030563 AF150704 Elbe River snow isolate Iso28 prokMSA_id:028977 AF186704 Agrobacterium sanguineum prokMSA_id:034175 AF188167 Erythrobacter KEppib37 prokMSA_id:049902 AF227259 Erythrobacter citreus prokMSA_id:050853 AF235995 Alpha F0812 prokMSA_id:037398 AF310724 Alpha NAP1 prokMSA_id:033905 AF314528 Erythrobacter citreus prokMSA_id:043392 AF325445 Erythrobacter sp. SD-21 prokMSA_id:030952 AF325446 Erythrobacter sp. MB-16 prokMSA_id:027934 AF348732 Alpha MPD-70 prokMSA_id:060586 AF407713 clone B10 prokMSA_id:040322 AF432338 alpha 4%N-26d-27 prokMSA_id:031853 AF432339 alpha 4%N-26d-7 prokMSA_id:017346 AF445122 clone Tc61 prokMSA_id:020518 AF445153 clone Tc96 prokMSA_id:021655 AF445710 alpha clone SM2B03 prokMSA_id:038661 AF445711 alpha clone SM2B05 prokMSA_id:046857 AF446307 alpha FL08D11 prokMSA_id:079541 AF465834 Porphyrobacter cryptus strain ALC-2 prokMSA_id:079367 AF465836 Erythrobacter litoralis strain DSM 8509 prokMSA_id:079308 AF465837 Erythromicrobium ramosum strain DSM 8510 prokMSA_id:079340 AF465838 Porphyrobacter neustonensis strain DSM 9434 prokMSA_id:018801 AF469353 alpha CTD80B prokMSA_id:064084 AF500004 Erythrobacter flavus strain SW-46 prokMSA_id:064083 AF500005 Erythrobacter flavus strain SW-52 prokMSA_id:006364 AJ223452 str. 4b. prokMSA_id:018235 AJ242776 Zymomonas sp. S5 prokMSA_id:061992 AJ244716 Erythrobacter-like sp. V4.BO.03 prokMSA_id:070653 AJ244718 Erythrobacter-like sp. V4.MO.15 prokMSA_id:061985 AJ244719 Erythrobacter-like sp. V4.BE.41 prokMSA_id:054234 AJ271042 alpha strain 15s.b prokMSA_id:021723 AJ271043 Marine S5 strain S5 prokMSA_id:074914 AJ294339 Alpha HY-68 isolate HY-68 prokMSA_id:076480 AJ294340 Erythrobacter citreus isolate HY-6 prokMSA_id:083716 AJ441007 Antarctic R-9216 strain R-9216 prokMSA_id:084218 AJ441013 Antarctic R-9478 strain R-9478 prokMSA_id:067410 AJ456953 Agrobacterium sanguineum isolate TIg-5 prokMSA_id:077813 AJ505839 Alpha A-col-BFA-6 isolate A-col-BFA-6 prokMSA_id:084563 AJ557865 Marine arctic deep-sea HI9 prokMSA_id:083753 AJ557867 Marine arctic deep-sea FF8b prokMSA_id:086299 AJ557868 Marine arctic deep-sea FC8b prokMSA_id:086199 AJ557869 Marine arctic deep-sea FF7a prokMSA_id:038512 AY007680 Erythrobacter sp. JP13.1 prokMSA_id:072640 AY038697 clone TAF-A230 prokMSA_id:037650 AY048657 Porphyrobacter tepidarius strain OK5APO prokMSA_id:072556 AY145555 Alpha AP-18 prokMSA_id:082642 AY177713 Sphingomonadaceae T3 prokMSA_id:080751 AY193275 clone BTM45 prokMSA_id:083194 AY242693 soil clone Tc130-34 prokMSA_id:088122 AY326257 Erythrobacter sp. MG3 prokMSA_id:088601 AY326258 Erythrobacter sp. NJ3Y prokMSA_id:088127 AY326259 Erythrobacter sp. NAP1 prokMSA_id:088266 AY328738 DSSD39 prokMSA_id:089759 AY328799 Drinking water OR2 prokMSA_id:091554 AY344375 clone K2-S-15 prokMSA_id:091605 AY345436 K2-13 prokMSA_id:098735 AY375113 clone F18 prokMSA_id:098444 AY375117 clone F24 prokMSA_id:095355 AY375129 clone F53 prokMSA_id:098237 AY375133 clone F9 prokMSA_id:095595 AY378201 Extreme arid zone HX-IE48 prokMSA_id:006333 L01786 Erythrobacter longus str. OCh 101. prokMSA_id:006335 M59062 Erythrobacter longus str. OCh 101 ATCC 33941 . prokMSA_id:006359 M96744 Erythrobacter longus str. OCh 101. prokMSA_id:006334 X72962 Erythrobacter litoralis str. T431-1187 DSM 8509 . 2.28.1.10.13.012 OTU 1 seq prokMSA_id:016463 AJ391206 Erythrobacter sp. AS-45 2.28.1.10.13.013 OTU 1 seq prokMSA_id:017929 AF245037 59H11 2.28.1.10.13.014 OTU 1 seq prokMSA_id:056063 AF467373 alpha clone 1597 2.28.1.10.13.015 OTU 2 seqs prokMSA_id:045812 AF422583 clone t008 prokMSA_id:069747 AY145560 Alpha AP-23 2.28.1.10.13.016 OTU 1 seq prokMSA_id:029534 Y16267 Citromicrobium bathoceanense 2.28.1.10.13.017 OTU 1 seq prokMSA_id:036134 Z88570 isolate HNSS12 2.28.1.10.13.018 OTU 1 seq prokMSA_id:053381 AY026916 Lutibacterium anuloederans 2.28.1.10.13.019 OTU 1 seq prokMSA_id:076145 AJ519653 alpha clone GuBH2-AG-57 2.28.1.10.13.020 OTU 1 seq prokMSA_id:076581 AY162907 clone ZB-Z7 2.28.1.10.13.021 OTU 2 seqs prokMSA_id:079915 AF468357 Arctic sea ice ARK10031 prokMSA_id:091093 AY135668 clone ANT18/2_94 2.28.1.10.13.022 OTU 1 seq prokMSA_id:080643 AB094922 clone:OHKB9.38 2.28.1.10.13.023 OTU 1 seq prokMSA_id:089901 AY328606 HOClCi57 2.28.1.10.13.024 OTU 1 seq prokMSA_id:096054 AY375115 clone F20 2.28.1.10.13.025 OTU 1 seq prokMSA_id:098711 AY395283 A-F-4 2.28.1.10.13.999 poor quality 118 seqs prokMSA_id:026687 AB022339 obligately oligotrophic POCPN-2 prokMSA_id:098065 AB079789 Oil-susceptible OSB27 prokMSA_id:095573 AB079790 Oil-susceptible OSB4 prokMSA_id:082599 AB097984 Alpha ANRB4-4 prokMSA_id:082496 AB097985 Alpha ANRB6-1 prokMSA_id:086659 AB097986 Alpha ANRB6-2 prokMSA_id:085884 AB097987 Alpha ANRB7-1 prokMSA_id:082746 AB097988 Alpha ANRB7-2 prokMSA_id:085228 AB097989 Alpha ANRB7-3 prokMSA_id:085618 AB097993 Alpha ANRB11-1 prokMSA_id:084205 AB098003 Alpha ANRB21-4 prokMSA_id:084769 AB098016 Alpha ANRW12-2 prokMSA_id:051195 AF025556 Erythrobacter sp. MED13 prokMSA_id:045541 AF025560 Erythrobacter longus prokMSA_id:025575 AF231411 Humic substances-degrading HS105 prokMSA_id:030249 AF261061 Agrobacterium sp. SKA40 prokMSA_id:050119 AF261063 Agrobacterium sp. SKA42 prokMSA_id:051185 AF300980 BSislt32 prokMSA_id:018742 AF321064 Erythrobacter sp. U9 prokMSA_id:066714 AF325136 Erythrobacter longus prokMSA_id:066718 AF325138 Erythrobacter sp. A10 prokMSA_id:066701 AF325150 Erythrobacter longus prokMSA_id:066704 AF325151 Erythrobacter longus prokMSA_id:033618 AF332252 clone C12-17 prokMSA_id:040475 AF332257 clone C12-16 prokMSA_id:041473 AF337830 copper smeltery D62 prokMSA_id:068047 AF365702 clone BT60DS1BD7 prokMSA_id:032666 AF367388 Erythromicrobium sp. clone D061 prokMSA_id:038502 AF429006 clone CR99-35-48 prokMSA_id:046868 AF429101 clone CR99-7-67 prokMSA_id:033165 AF432319 alpha 0%N-26d-88 prokMSA_id:047449 AF446308 alpha FL07E01 prokMSA_id:038233 AF460887 Marine SIMO-IS123 prokMSA_id:049831 AF460891 Marine SIMO-IS126 prokMSA_id:032693 AF460894 Marine SIMO-IS187 prokMSA_id:068863 AF460916 Marine SIMO-IS135 prokMSA_id:039701 AF460919 Marine SIMO-IS138 prokMSA_id:068862 AF460924 Marine SIMO-IS143 prokMSA_id:068861 AF460927 Marine SIMO-IS146 prokMSA_id:044321 AF460928 Marine SIMO-IS147 prokMSA_id:049691 AF460929 Marine SIMO-IS148 prokMSA_id:068860 AF460932 Marine SIMO-IS151 prokMSA_id:024609 AF460933 Marine SIMO-IS152 prokMSA_id:068858 AF460935 Marine SIMO-IS154 prokMSA_id:034720 AF460937 Marine SIMO-IS156 prokMSA_id:068859 AF460938 Marine SIMO-IS157 prokMSA_id:025674 AF460959 Marine SIMO-IS218 prokMSA_id:020031 AF469352 alpha CTD23B prokMSA_id:063753 AF506032 Marine SIMO IS-S75-232 prokMSA_id:069539 AF544903 alpha clone A191-14 prokMSA_id:069234 AF544934 alpha clone 1-7-8 prokMSA_id:031757 AJ233477 clone WR136 prokMSA_id:046136 AJ233503 clone WR1130 prokMSA_id:055602 AJ244717 Erythrobacter-like sp. V4.BS.06 prokMSA_id:018712 AJ250896 marine alpha DIL-1 prokMSA_id:017389 AJ292823 WR889 clone WR889 prokMSA_id:028976 AJ315687 Alpha ML4 strain ML4 prokMSA_id:044906 AJ315688 Alpha ML19 strain ML19 prokMSA_id:033271 AJ315689 Alpha ML34 strain ML34 prokMSA_id:049045 AJ315690 Alpha ML22 strain ML22 prokMSA_id:020543 AJ315691 Alpha ML3 strain ML3 prokMSA_id:037013 AJ315692 Alpha ML36 strain ML36 prokMSA_id:023989 AJ315695 Alpha ML21 strain ML21 prokMSA_id:023538 AJ318407 Alpha ML1 prokMSA_id:073364 AJ319857 SB-43-DB prokMSA_id:049880 AJ391169 Erythrobacter sp. AS-5 prokMSA_id:039232 AJ391176 Erythrobacter sp. AS-13 prokMSA_id:018502 AJ391184 Erythrobacter sp. AS-23 prokMSA_id:028245 AJ391186 Erythrobacter sp. AS-25 prokMSA_id:070541 AJ400570 clone G4-K10 prokMSA_id:029889 AJ400572 clone G4-K29 prokMSA_id:048614 AJ421153 clone C6-K3 prokMSA_id:051079 AJ421177 clone C8-K36 prokMSA_id:045391 AY037606 soil clone S083 prokMSA_id:074023 AY038698 clone TAFA208 prokMSA_id:073744 AY038699 clone TAF-B23 prokMSA_id:056022 AY144198 alpha clone LTUA02856 prokMSA_id:056838 AY149735 alpha SIMO CL-S30-63 prokMSA_id:056835 AY149739 alpha SIMO CL-S30-67 prokMSA_id:056829 AY149747 alpha SIMO CL-S30-74 prokMSA_id:056832 AY149748 alpha SIMO CL-S30-75 prokMSA_id:056632 AY149751 alpha SIMO CL-S30-78 prokMSA_id:056833 AY149752 alpha SIMO CL-S30-80 prokMSA_id:056826 AY149756 alpha SIMO CL-S30-85 prokMSA_id:056824 AY149758 alpha SIMO CL-S30-88 prokMSA_id:056822 AY149761 alpha SIMO CL-S30-91 prokMSA_id:056821 AY149770 alpha SIMO CL-S29-5 prokMSA_id:056817 AY149771 alpha SIMO CL-S29-6 prokMSA_id:056814 AY149772 alpha SIMO CL-S29-7 prokMSA_id:056813 AY149774 alpha SIMO CL-S29-9 prokMSA_id:056804 AY149783 alpha SIMO CL-S29-20 prokMSA_id:056802 AY149787 alpha SIMO CL-S29-25 prokMSA_id:056279 AY149789 alpha SIMO CL-S29-27 prokMSA_id:056797 AY149799 alpha SIMO CL-S29-39 prokMSA_id:056793 AY149805 alpha SIMO CL-S29-46 prokMSA_id:056791 AY149809 alpha SIMO CL-S29-50 prokMSA_id:082946 AY214731 alpha clone BB-1-H10 prokMSA_id:084699 AY251223 Porphyrobacter sp. prokMSA_id:087796 AY278925 TB15 prokMSA_id:087610 AY293489 alpha clone FL07E06 prokMSA_id:090466 AY313919 Flavobacterium sp. clone TD-1 prokMSA_id:088907 AY323140 alpha clone A115-22 prokMSA_id:091095 AY335457 Sphingomonadaceae clone B101/6 prokMSA_id:091900 AY335471 Sphingomonadaceae clone TM/10 prokMSA_id:092274 AY353702 isolate Ph12 prokMSA_id:094092 AY361919 clone P8-GEN-7 prokMSA_id:093064 AY363101 alpha clone SIMO CL-S29-43 prokMSA_id:006357 D12699 Erythrobacter longus JCM 6170 . prokMSA_id:006342 D84429 Porphyrobacter tepidarius str. OT3. prokMSA_id:006358 L01783 Porphyrobacter sp. ACM 2721. prokMSA_id:006349 L01785 Porphyrobacter neustonensis ACM 2844 . prokMSA_id:006341 M55493 Erythrobacter longus str. OCh 101 ATCC 33941 . prokMSA_id:006356 M96745 Porphyrobacter neustonensis ACM 2844 . prokMSA_id:026767 U63952 Erythromicrobium sp. prokMSA_id:031390 U64003 Erythrobacter sp. SCB26 prokMSA_id:006347 X72909 Erythromicrobium ramosum str. E5 Yurkov strain Drews DSM 8510 . prokMSA_id:006355 X84606 str. SBR2075. prokMSA_id:006346 X89333 clone 6811. 2.28.1.10.14 SAN.SIBIRICUS 24 seqs 2.28.1.10.14.001 OTU 1 seq prokMSA_id:006365 Y10678 Sandaracinobacter sibiricus str. RB16-17 . 2.28.1.10.14.002 OTU 1 seq prokMSA_id:056491 AF407721 clone B37 2.28.1.10.14.003 OTU 1 seq prokMSA_id:066485 AY100605 clone cvf61061 2.28.1.10.14.999 poor quality 21 seqs prokMSA_id:083483 AB098015 Alpha ANRW11-4 prokMSA_id:085423 AB098018 Alpha ANRW14-1 prokMSA_id:029093 AF353286 Tui1-10 prokMSA_id:069439 AF530920 Alpha sj20 prokMSA_id:069275 AF530923 Alpha sj35 prokMSA_id:055944 AF530925 Alpha sj42 prokMSA_id:069399 AF530927 Alpha sj49 prokMSA_id:069444 AF530934 Alpha wj07 prokMSA_id:069098 AF530938 Alpha wj20 prokMSA_id:071681 AF530943 Alpha wj36 prokMSA_id:071889 AF530968 Alpha so03 prokMSA_id:071980 AF530971 Alpha so12 prokMSA_id:072604 AF530975 Alpha so36 prokMSA_id:069732 AF530988 Alpha wo26 prokMSA_id:072707 AF531015 Alpha Mwj2 prokMSA_id:072916 AF531020 Alpha Mso2 prokMSA_id:061572 AY043637 alpha clone NOS7.139WL prokMSA_id:061476 AY043748 alpha clone NMW3.79WL prokMSA_id:070275 AY144191 alpha clone LTUA01056 prokMSA_id:073228 AY144209 alpha clone LTUA08214 prokMSA_id:085340 AY251229 alpha clone 18B_2 2.28.2 BETA_SUBDIVISION 7845 seqs 2.28.2.1 NEISSERIA_GROUP 1099 seqs 2.28.2.1.1 IOD.FLUVIATILE 7 seqs 2.28.2.1.1.001 OTU 1 seq prokMSA_id:064418 AY102904 clone BCM3S-14B 2.28.2.1.1.002 OTU 1 seq prokMSA_id:075463 AY154549 earthworm intestine clone lw43 2.28.2.1.1.003 OTU 2 seqs prokMSA_id:090037 AY315171 Glacier FXS16 prokMSA_id:091097 AY345552 H2 2.28.2.1.1.999 poor quality 3 seqs prokMSA_id:060491 AF488651 Beta Z16 prokMSA_id:042945 AJ247214 Iodobacter fluviatilis prokMSA_id:006366 M22511 Iodobacter fluviatile ATCC 33051 . 2.28.2.1.2 MVR.AERODENITRIFICANS_SUBGROUP 18 seqs 2.28.2.1.2.001 OTU 1 seq prokMSA_id:006368 Y17602 Formivibrio citricus DSM 6150. 2.28.2.1.2.002 OTU 4 seqs prokMSA_id:066302 AB074526 Aquaspirillum dispar prokMSA_id:044423 AF422595 clone t021 prokMSA_id:074077 AF455113 Microvirgula aerodenitrificans strain NZ753-98 prokMSA_id:006367 U89333 Microvirgula aerodenitrificans str. SGLY2 . 2.28.2.1.2.003 OTU 4 seqs prokMSA_id:016445 AF389085 Laribacter hongkongensis prokMSA_id:040538 AF449219 Laribacter hongkongensis strain NZ3166_99 prokMSA_id:032541 AF449220 Laribacter hongkongensis strain NZ2153_99 prokMSA_id:029841 AF449221 Laribacter hongkongensis strain NZ3804_98 2.28.2.1.2.004 OTU 1 seq prokMSA_id:064884 AB076000 Aquaspirillum putridiconchylium 2.28.2.1.2.005 OTU 1 seq prokMSA_id:066305 AB074518 Aquaspirillum serpens 2.28.2.1.2.006 OTU 1 seq prokMSA_id:076340 AY168730 clone HC-64P 2.28.2.1.2.007 OTU 1 seq prokMSA_id:076586 AY168746 clone HC-39 2.28.2.1.2.008 OTU 1 seq prokMSA_id:087861 AY264287 Chitinibacter tainanensis strain BCRC 17254 complete 2.28.2.1.2.999 poor quality 4 seqs prokMSA_id:042226 AB023617 NIC030 prokMSA_id:060490 AF488652 Beta Z17 prokMSA_id:019712 AJ005649 beta isolate Clo 18 prokMSA_id:087800 AJ561147 beta clone ANT-AC 11 2.28.2.1.3 VG.INDIGOFERA_SUBGROUP 6 seqs 2.28.2.1.3.001 OTU 1 seq prokMSA_id:006370 AB021385 Vogesella indigofera ATCC 19706 . 2.28.2.1.3.002 OTU 1 seq prokMSA_id:036932 AF227863 str. 82348 2.28.2.1.3.999 poor quality 4 seqs prokMSA_id:027135 AB011730 beta strain: G22012 prokMSA_id:018810 AJ278519 Vogesella indigofera clone 3-2 prokMSA_id:060903 AY135866 clone SG1-22 prokMSA_id:006369 U45995 Vogesella indigofera ATCC 19706 . 2.28.2.1.4 CRB.VIOLACEUM_SUBGROUP 48 seqs 2.28.2.1.4.001 OTU 2 seqs prokMSA_id:006374 AB017489 str. MBIC3903. prokMSA_id:091724 AY345393 G5_GreenLake 2.28.2.1.4.002 OTU 29 seqs prokMSA_id:006373 AB017487 Chromobacterium MBIC3901 str. MBIC3901. prokMSA_id:092865 AE016911 Chromobacterium violaceum ATCC 12472 section 2 of 16 of the complete genome prokMSA_id:092140 AE016913 Chromobacterium violaceum ATCC 12472 section 4 of 16 of the complete genome prokMSA_id:092928 AE016915 Chromobacterium violaceum ATCC 12472 section 6 of 16 of the complete genome prokMSA_id:092420 AE016921 Chromobacterium violaceum ATCC 12472 section 12 of 16 of the complete genome prokMSA_id:092311 AE016922 Chromobacterium violaceum ATCC 12472 section 13 of 16 of the complete genome prokMSA_id:092520 AE016924 Chromobacterium violaceum ATCC 12472 section 15 of 16 of the complete genome prokMSA_id:063505 AY117552 Chromobacterium sp. 48 complete prokMSA_id:063503 AY117553 Chromobacterium violaceum strain 49 complete prokMSA_id:055614 AY117554 Chromobacterium violaceum strain 52 complete prokMSA_id:063500 AY117555 Chromobacterium sp. 64 complete prokMSA_id:063497 AY117556 Chromobacterium sp. 23 complete prokMSA_id:063496 AY117557 Chromobacterium violaceum strain 07 complete prokMSA_id:063495 AY117558 Chromobacterium sp. 29 complete prokMSA_id:063494 AY117559 Chromobacterium sp. 46 complete prokMSA_id:063492 AY117560 Chromobacterium sp. 06 complete prokMSA_id:063493 AY117561 Chromobacterium sp. 21 complete prokMSA_id:056639 AY117562 Chromobacterium sp. 27 complete prokMSA_id:063491 AY117563 Chromobacterium sp. 32 complete prokMSA_id:063490 AY117564 Chromobacterium sp. 44 complete prokMSA_id:063489 AY117565 Chromobacterium sp. 53 complete prokMSA_id:063488 AY117566 Chromobacterium sp. 62 complete prokMSA_id:063487 AY117567 Chromobacterium sp. 66 complete prokMSA_id:063486 AY117568 Chromobacterium sp. 67 complete prokMSA_id:063484 AY117569 Chromobacterium sp. 68 complete prokMSA_id:056562 AY117570 Chromobacterium sp. 69 complete prokMSA_id:063483 AY117571 Chromobacterium sp. 70 complete prokMSA_id:063485 AY117572 Chromobacterium sp. 71 complete prokMSA_id:093662 NC_005085 Chromobacterium violaceum ATCC 12472 complete genome 2.28.2.1.4.003 OTU 1 seq prokMSA_id:006372 AB013258 str. NKB6. 2.28.2.1.4.004 OTU 2 seqs prokMSA_id:020511 AB074711 Beta S-A1-8B prokMSA_id:034835 AB074732 Alpha S-N1-8C 2.28.2.1.4.005 OTU 2 seqs prokMSA_id:022255 AB076875 beta clone:OS1L-24 prokMSA_id:077630 AB089102 beta clone:Rs-D51 2.28.2.1.4.006 OTU 2 seqs prokMSA_id:023028 AB078837 Beta W5 prokMSA_id:027904 AB078843 Beta WB5 2.28.2.1.4.007 OTU 1 seq prokMSA_id:077739 AJ508172 clone J2_41 2.28.2.1.4.999 poor quality 9 seqs prokMSA_id:073955 AJ247211 Chromobacterium violaceum prokMSA_id:071085 AJ504499 isolate P1CN31 prokMSA_id:062558 AJ504570 isolate P2CN21 prokMSA_id:061652 AY043532 Beta 1S2.B10 prokMSA_id:061653 AY043533 Beta 1S2.B7 prokMSA_id:063480 AY117573 Chromobacterium sp. 65 prokMSA_id:063481 AY117574 Chromobacterium sp. 72 prokMSA_id:006371 M22510 Chromobacterium violaceum ATCC 12472 . prokMSA_id:050771 U65966 Chromobacterium violaceum spanning the V3-V4 region 2.28.2.1.5 VIT.STERCORARIA_SUBGROUP 6 seqs 2.28.2.1.5.001 OTU 2 seqs prokMSA_id:006375 L06174 Vitreoscilla stercoraria ATCC 15218 . prokMSA_id:006376 M22519 Vitreoscilla stercoraria str. VT1. 2.28.2.1.5.999 poor quality 4 seqs prokMSA_id:048621 AJ289186 E2-K1 prokMSA_id:039136 AJ405035 A19-K1 clone A19-K1 prokMSA_id:078253 AJ508170 clone J2_35 prokMSA_id:029144 AY037577 soil clone S042 2.28.2.1.6 NIS.CANIS_SUBGROUP 11 seqs 2.28.2.1.6.001 OTU 1 seq prokMSA_id:006378 L06170 Neisseria canis str. H6 ATCC 14687 . 2.28.2.1.6.002 OTU 1 seq prokMSA_id:058031 AF487709 Neisseria dentiae V33 2.28.2.1.6.003 OTU 1 seq prokMSA_id:042684 AY005029 Neisseria sp. oral clone AK105 2.28.2.1.6.004 OTU 3 seqs prokMSA_id:056308 AB087262 Alysiella filiformis strain:IAM 14968 prokMSA_id:063986 AB087263 Alysiella filiformis strain:IAM 14895 prokMSA_id:055486 AF487710 Alysiella filiformis ATCC 15532 complete 2.28.2.1.6.005 OTU 1 seq prokMSA_id:072891 AF429995 Neisseria weaveri strain RLUH 2.28.2.1.6.006 OTU 2 seqs prokMSA_id:075888 AY157705 Neisseria sp. CCUG 46910 prokMSA_id:075279 AY157706 Neisseria sp. CCUG 46911 2.28.2.1.6.999 poor quality 2 seqs prokMSA_id:052264 AJ247235 Neisseria canis prokMSA_id:006377 X84484 str. SBR1041. 2.28.2.1.7 KINGELLA.ORALIS 4 seqs 2.28.2.1.7.001 OTU 1 seq prokMSA_id:092601 AY349388 Neisseria sp. oral clone JC012 2.28.2.1.7.999 poor quality 3 seqs prokMSA_id:027870 AJ247217 Kingella oralis prokMSA_id:020741 AJ309987 beta strain dtb246 prokMSA_id:006379 L06164 Kingella oralis str. UB-38 CCUG 30450 . 2.28.2.1.8 KIN.KINGAE_SUBGROUP 5 seqs 2.28.2.1.8.001 OTU 2 seqs prokMSA_id:006380 M22517 Kingella kingae ATCC 23330 . prokMSA_id:006381 X74902 Kingella kingae NCTC 10529 . 2.28.2.1.8.002 OTU 1 seq prokMSA_id:056599 AB087261 Simonsiella steedae strain:IAM 14972 2.28.2.1.8.999 poor quality 2 seqs prokMSA_id:070506 AF328153 Simonsiella steedae strain ATCC27409T prokMSA_id:045175 AJ247216 Kingella kingae 2.28.2.1.9 NIS.GONORRHOEAE_SUBGROUP 994 seqs 2.28.2.1.9.999 poor quality 994 seqs prokMSA_id:021272 AB028333 oral SH12 prokMSA_id:037673 AB028344 oral SH27 prokMSA_id:030035 AB028345 oral SH32 prokMSA_id:020507 AB028353 oral SH65 prokMSA_id:016349 AB028366 oral AP60-6 prokMSA_id:022123 AB028381 oral AP60-22 prokMSA_id:033713 AB028384 oral AP60-25 prokMSA_id:040480 AB028389 oral AP60-33 prokMSA_id:043714 AB028405 oral AP60-53 prokMSA_id:043125 AB028408 oral AP60-56 prokMSA_id:016840 AB028409 oral AP60-58 prokMSA_id:027943 AB028410 oral AP60-60 prokMSA_id:063987 AB087264 Simonsiella crassa strain:IAM 14969 prokMSA_id:063985 AB087265 Neisseria denitrificans strain:IAM 14975 prokMSA_id:006433 AF059671 Neisseria meningitidis str. N.60/94. prokMSA_id:006458 AF146369 Neisseria gonorrhoeae str. 76993. prokMSA_id:040565 AF201966 Human oral C53 prokMSA_id:041408 AF201967 Human oral AC54 prokMSA_id:044102 AF201968 Human oral AC55 prokMSA_id:069100 AF293419 Neisseria gonorrhoeae ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:030132 AF306836 Neisseria cinerea prokMSA_id:046099 AF310340 Neisseria meningitidis strain M7284 prokMSA_id:024897 AF310341 Neisseria meningitidis strain M7289 prokMSA_id:044373 AF310342 Neisseria meningitidis strain M209 prokMSA_id:017381 AF310343 Neisseria meningitidis strain M28 prokMSA_id:030575 AF310344 Neisseria meningitidis strain M3291 prokMSA_id:070770 AF310345 Neisseria meningitidis strain M810 prokMSA_id:041528 AF310346 Neisseria meningitidis strain M2656 prokMSA_id:026155 AF310347 Neisseria meningitidis strain M6304 prokMSA_id:029539 AF310348 Neisseria meningitidis strain M87 prokMSA_id:023633 AF310349 Neisseria meningitidis strain M3686 prokMSA_id:032810 AF310350 Neisseria meningitidis strain M1591 prokMSA_id:019313 AF310351 Neisseria meningitidis strain M4212 prokMSA_id:044643 AF310352 Neisseria meningitidis strain M2286 prokMSA_id:035670 AF310353 Neisseria meningitidis strain M630 prokMSA_id:024797 AF310354 Neisseria meningitidis strain M1540 prokMSA_id:049543 AF310355 Neisseria meningitidis strain M1539 prokMSA_id:039546 AF310356 Neisseria meningitidis strain M1538 prokMSA_id:029050 AF310357 Neisseria meningitidis strain M1537 prokMSA_id:026532 AF310358 Neisseria meningitidis strain M1536 prokMSA_id:036856 AF310359 Neisseria meningitidis strain M1535 prokMSA_id:031989 AF310360 Neisseria meningitidis strain M1534 prokMSA_id:027924 AF310361 Neisseria meningitidis strain M801 prokMSA_id:018821 AF310362 Neisseria meningitidis strain M416 prokMSA_id:024706 AF310363 Neisseria meningitidis strain M433 prokMSA_id:030442 AF310364 Neisseria meningitidis strain M419 prokMSA_id:032237 AF310365 Neisseria meningitidis strain M635 prokMSA_id:026402 AF310366 Neisseria meningitidis strain M636 prokMSA_id:018592 AF310367 Neisseria meningitidis strain M637 prokMSA_id:043618 AF310368 Neisseria meningitidis strain M413 prokMSA_id:021707 AF310369 Neisseria meningitidis strain M640 prokMSA_id:024250 AF310370 Neisseria meningitidis strain M631 prokMSA_id:038092 AF310371 Neisseria meningitidis strain M417 prokMSA_id:052065 AF310372 Neisseria meningitidis strain M802 prokMSA_id:025551 AF310373 Neisseria meningitidis strain M632 prokMSA_id:032412 AF310374 Neisseria meningitidis strain M418 prokMSA_id:032757 AF310375 Neisseria meningitidis strain M803 prokMSA_id:048312 AF310376 Neisseria meningitidis strain M633 prokMSA_id:027280 AF310377 Neisseria meningitidis strain M634 prokMSA_id:047520 AF310378 Neisseria meningitidis strain M800 prokMSA_id:029223 AF310379 Neisseria meningitidis strain M144 prokMSA_id:025143 AF310380 Neisseria meningitidis strain M7164 prokMSA_id:053826 AF310381 Neisseria meningitidis strain M7165 prokMSA_id:024994 AF310382 Neisseria meningitidis strain M2370 prokMSA_id:032566 AF310383 Neisseria meningitidis strain M785 prokMSA_id:032114 AF310384 Neisseria meningitidis strain M3790 prokMSA_id:069912 AF310385 Neisseria meningitidis strain M3689 prokMSA_id:072312 AF310386 Neisseria meningitidis strain M2829 prokMSA_id:070754 AF310387 Neisseria meningitidis strain M617 prokMSA_id:070863 AF310388 Neisseria meningitidis strain M2836 prokMSA_id:017418 AF310389 Neisseria meningitidis strain M620 prokMSA_id:031261 AF310390 Neisseria meningitidis strain M1171 prokMSA_id:043542 AF310391 Neisseria meningitidis strain M980 prokMSA_id:042156 AF310392 Neisseria meningitidis strain M2150 prokMSA_id:026288 AF310393 Neisseria meningitidis strain M4027 prokMSA_id:071291 AF310394 Neisseria meningitidis strain M1441 prokMSA_id:016449 AF310395 Neisseria meningitidis strain M2708 prokMSA_id:074147 AF310396 Neisseria meningitidis strain M680 prokMSA_id:071211 AF310397 Neisseria meningitidis strain M2835 prokMSA_id:034913 AF310398 Neisseria meningitidis strain M1969 prokMSA_id:041710 AF310399 Neisseria meningitidis strain M1977 prokMSA_id:038437 AF310400 Neisseria meningitidis strain M3045 prokMSA_id:018891 AF310401 Neisseria meningitidis strain M1971 prokMSA_id:041863 AF310402 Neisseria meningitidis strain M1975 prokMSA_id:029571 AF310403 Neisseria meningitidis strain M1974 prokMSA_id:043036 AF310404 Neisseria meningitidis strain M3039 prokMSA_id:034128 AF310405 Neisseria meningitidis strain M2837 prokMSA_id:073554 AF310406 Neisseria meningitidis strain M7153 prokMSA_id:070811 AF310407 Neisseria meningitidis strain M7035 prokMSA_id:070170 AF310408 Neisseria meningitidis strain M7034 prokMSA_id:034491 AF310409 Neisseria meningitidis strain M1951 prokMSA_id:031772 AF310410 Neisseria meningitidis strain M1964 prokMSA_id:044176 AF310411 Neisseria meningitidis strain M1541 prokMSA_id:031300 AF310412 Neisseria meningitidis strain M1530 prokMSA_id:027650 AF310413 Neisseria meningitidis strain M1963 prokMSA_id:040712 AF310414 Neisseria meningitidis strain M1967 prokMSA_id:043508 AF310415 Neisseria meningitidis strain M1957 prokMSA_id:018600 AF310416 Neisseria meningitidis strain M1958 prokMSA_id:071684 AF310417 Neisseria meningitidis strain M7149 prokMSA_id:071988 AF310418 Neisseria meningitidis strain M7151 prokMSA_id:072407 AF310419 Neisseria meningitidis strain M7106 prokMSA_id:073248 AF310420 Neisseria meningitidis strain M7105 prokMSA_id:073999 AF310421 Neisseria meningitidis strain M7104 prokMSA_id:073542 AF310422 Neisseria meningitidis strain M7123 prokMSA_id:070134 AF310423 Neisseria meningitidis strain M7257 prokMSA_id:074362 AF310424 Neisseria meningitidis strain M7213 prokMSA_id:070849 AF310425 Neisseria meningitidis strain M7115 prokMSA_id:071154 AF310426 Neisseria meningitidis strain M7142 prokMSA_id:070075 AF310427 Neisseria meningitidis strain M7152 prokMSA_id:074156 AF310428 Neisseria meningitidis strain M7212 prokMSA_id:070081 AF310429 Neisseria meningitidis strain M7089B prokMSA_id:073234 AF310430 Neisseria meningitidis strain M7089A prokMSA_id:074320 AF310431 Neisseria meningitidis strain M7124 prokMSA_id:072832 AF310432 Neisseria meningitidis strain M7156 prokMSA_id:072700 AF310433 Neisseria meningitidis strain M7131 prokMSA_id:021618 AF310434 Neisseria meningitidis strain M1961 prokMSA_id:040780 AF310435 Neisseria meningitidis strain M1966 prokMSA_id:017419 AF310436 Neisseria meningitidis strain M1973 prokMSA_id:044919 AF310437 Neisseria meningitidis strain M1976 prokMSA_id:020817 AF310438 Neisseria meningitidis strain M1968 prokMSA_id:019554 AF310439 Neisseria meningitidis strain M1970 prokMSA_id:023627 AF310440 Neisseria meningitidis strain M1972 prokMSA_id:019016 AF310441 Neisseria meningitidis strain M786 prokMSA_id:074287 AF310442 Neisseria meningitidis strain M7322 prokMSA_id:040476 AF310443 Neisseria meningitidis strain M160 prokMSA_id:034961 AF310444 Neisseria meningitidis strain M638 prokMSA_id:033227 AF310445 Neisseria meningitidis strain M415 prokMSA_id:035275 AF310446 Neisseria meningitidis strain M7292 prokMSA_id:054664 AF310447 Neisseria meningitidis strain M7291 prokMSA_id:047231 AF310448 Neisseria meningitidis strain M7288 prokMSA_id:024064 AF310449 Neisseria meningitidis strain M7185 prokMSA_id:022945 AF310450 Neisseria meningitidis strain M7163 prokMSA_id:026220 AF310451 Neisseria meningitidis strain M1959 prokMSA_id:044218 AF310452 Neisseria meningitidis strain M1955 prokMSA_id:050577 AF310453 Neisseria meningitidis strain M1956 prokMSA_id:021335 AF310454 Neisseria meningitidis strain M1954 prokMSA_id:027515 AF310455 Neisseria meningitidis prokMSA_id:037531 AF310456 Neisseria meningitidis strain M1953 prokMSA_id:030717 AF310457 Neisseria meningitidis strain M1962 prokMSA_id:025352 AF310458 Neisseria meningitidis strain M1960 prokMSA_id:021517 AF310459 Neisseria meningitidis strain M1952 prokMSA_id:022810 AF310460 Neisseria meningitidis strain M7166 prokMSA_id:045435 AF310461 Neisseria meningitidis strain M7167 prokMSA_id:069886 AF310462 Neisseria meningitidis strain M7184 prokMSA_id:074344 AF310463 Neisseria meningitidis strain M7187 prokMSA_id:038484 AF310464 Neisseria meningitidis strain M7160 prokMSA_id:042060 AF310465 Neisseria meningitidis strain M7159 prokMSA_id:028329 AF310466 Neisseria meningitidis strain M7161 prokMSA_id:073207 AF310467 Neisseria meningitidis strain M7150 prokMSA_id:070305 AF310468 Neisseria meningitidis strain M7134 prokMSA_id:018941 AF310469 Neisseria meningitidis strain M7162 prokMSA_id:045952 AF310470 Neisseria meningitidis strain M7168 prokMSA_id:071786 AF310471 Neisseria meningitidis strain M7107 prokMSA_id:074217 AF310472 Neisseria meningitidis strain M7085 prokMSA_id:069849 AF310473 Neisseria meningitidis strain M7081B prokMSA_id:034827 AF310474 Neisseria meningitidis strain M4039 prokMSA_id:018156 AF310475 Neisseria meningitidis strain M4607 prokMSA_id:020067 AF310476 Neisseria meningitidis strain M4895 prokMSA_id:043533 AF310477 Neisseria meningitidis strain M141 prokMSA_id:033832 AF310478 Neisseria meningitidis strain M140 prokMSA_id:017715 AF310479 Neisseria meningitidis strain M33 prokMSA_id:031622 AF310480 Neisseria meningitidis strain M151 prokMSA_id:053651 AF310481 Neisseria meningitidis strain M152 prokMSA_id:016884 AF310482 Neisseria meningitidis strain M131 prokMSA_id:040808 AF310483 Neisseria meningitidis strain M29 prokMSA_id:038799 AF310484 Neisseria meningitidis strain M153 prokMSA_id:023944 AF310485 Neisseria meningitidis strain M34 prokMSA_id:038671 AF310486 Neisseria meningitidis strain M27 prokMSA_id:039690 AF310487 Neisseria meningitidis strain M30 prokMSA_id:021090 AF310488 Neisseria meningitidis strain M143 prokMSA_id:048671 AF310489 Neisseria meningitidis strain M31 prokMSA_id:038162 AF310490 Neisseria meningitidis strain M145 prokMSA_id:027911 AF310491 Neisseria meningitidis strain M32 prokMSA_id:030183 AF310492 Neisseria meningitidis strain M149 prokMSA_id:046362 AF310493 Neisseria meningitidis strain M148 prokMSA_id:038281 AF310494 Neisseria meningitidis strain M147 prokMSA_id:038641 AF310495 Neisseria meningitidis strain M146 prokMSA_id:043148 AF310496 Neisseria meningitidis strain M540 prokMSA_id:026563 AF310497 Neisseria meningitidis strain M4352 prokMSA_id:052102 AF310498 Neisseria meningitidis strain M1416 prokMSA_id:051986 AF310499 Neisseria meningitidis strain M2568 prokMSA_id:027607 AF310500 Neisseria meningitidis strain M6137 prokMSA_id:051326 AF310501 Neisseria meningitidis strain M649 prokMSA_id:037827 AF310502 Neisseria meningitidis strain M5371 prokMSA_id:027260 AF310503 Neisseria meningitidis strain M5368 prokMSA_id:023975 AF310504 Neisseria meningitidis strain M5367 prokMSA_id:048769 AF310505 Neisseria meningitidis strain M5377 prokMSA_id:021711 AF310506 Neisseria meningitidis strain M5370 prokMSA_id:036524 AF310507 Neisseria meningitidis strain M6205 prokMSA_id:037135 AF310508 Neisseria meningitidis strain M6203 prokMSA_id:049621 AF310509 Neisseria meningitidis strain M6204 prokMSA_id:035386 AF310510 Neisseria meningitidis strain M6201 prokMSA_id:033951 AF310511 Neisseria meningitidis strain M6200 prokMSA_id:036308 AF310512 Neisseria meningitidis strain M5369 prokMSA_id:026393 AF310513 Neisseria meningitidis strain M5376 prokMSA_id:017320 AF310514 Neisseria meningitidis strain M5375 prokMSA_id:020909 AF310515 Neisseria meningitidis strain M5374 prokMSA_id:040493 AF310516 Neisseria meningitidis strain M5372 prokMSA_id:027179 AF310517 Neisseria meningitidis strain M5373 prokMSA_id:016722 AF310518 Neisseria meningitidis strain M4022 prokMSA_id:017021 AF310519 Neisseria meningitidis strain M2468 prokMSA_id:023489 AF310520 Neisseria meningitidis strain M2578 prokMSA_id:047575 AF310521 Neisseria meningitidis strain M548 prokMSA_id:042688 AF310522 Neisseria meningitidis strain M1838 prokMSA_id:047971 AF310523 Neisseria meningitidis strain M44040 prokMSA_id:036366 AF310524 Neisseria meningitidis strain M3157 prokMSA_id:036172 AF310525 Neisseria meningitidis strain M2439 prokMSA_id:016956 AF310526 Neisseria meningitidis strain M1879 prokMSA_id:053550 AF310527 Neisseria meningitidis strain M3262 prokMSA_id:020505 AF310528 Neisseria meningitidis strain M1650 prokMSA_id:040550 AF310529 Neisseria meningitidis strain M4216 prokMSA_id:023951 AF310530 Neisseria meningitidis strain M1000 prokMSA_id:048804 AF310531 Neisseria meningitidis strain M3771 prokMSA_id:030984 AF310532 Neisseria meningitidis strain M3073 prokMSA_id:026140 AF310533 Neisseria meningitidis strain M7295 prokMSA_id:041222 AF310534 Neisseria meningitidis strain M7296 prokMSA_id:040605 AF310535 Neisseria meningitidis strain M7294 prokMSA_id:027629 AF310536 Neisseria meningitidis strain M7297 prokMSA_id:054109 AF310537 Neisseria meningitidis strain M7286 prokMSA_id:054210 AF310538 Neisseria meningitidis strain M6049 prokMSA_id:045127 AF310539 Neisseria meningitidis strain M prokMSA_id:018187 AF310540 Neisseria meningitidis strain M6199 prokMSA_id:032179 AF310541 Neisseria meningitidis strain M239 prokMSA_id:039747 AF310542 Neisseria meningitidis strain M3688 prokMSA_id:047888 AF310543 Neisseria meningitidis strain M414 prokMSA_id:044724 AF310544 Neisseria meningitidis strain M4015 prokMSA_id:072444 AF310545 Neisseria meningitidis strain M4648 prokMSA_id:051456 AF310546 Neisseria meningitidis strain M6095 prokMSA_id:042501 AF310547 Neisseria meningitidis strain M26 prokMSA_id:053813 AF310548 Neisseria meningitidis strain M1532 prokMSA_id:072067 AF310549 Neisseria meningitidis strain N111/88 prokMSA_id:033255 AF310550 Neisseria meningitidis strain N218/89 prokMSA_id:052834 AF310551 Neisseria meningitidis strain M4797 prokMSA_id:024959 AF310552 Neisseria meningitidis strain M4214 prokMSA_id:021465 AF310553 Neisseria meningitidis strain M1533 prokMSA_id:047819 AF310554 Neisseria meningitidis strain N171/88 prokMSA_id:048661 AF310555 Neisseria meningitidis strain NZ3968 prokMSA_id:040320 AF310556 Neisseria meningitidis strain N117/89 prokMSA_id:073420 AF310557 Neisseria meningitidis strain M1531 prokMSA_id:046624 AF310558 Neisseria meningitidis strain N112/88 prokMSA_id:048574 AF310559 Neisseria meningitidis strain 3966 prokMSA_id:016709 AF310560 Neisseria meningitidis strain M2795 prokMSA_id:039114 AF310561 Neisseria meningitidis strain M2783 prokMSA_id:046628 AF310562 Neisseria meningitidis strain M2782 prokMSA_id:043583 AF310563 Neisseria meningitidis strain M2781 prokMSA_id:020191 AF310564 Neisseria meningitidis strain M2788 prokMSA_id:032023 AF310565 Neisseria meningitidis strain M2786 prokMSA_id:034108 AF310566 Neisseria meningitidis strain M262 prokMSA_id:028018 AF310567 Neisseria meningitidis strain N150/88 prokMSA_id:030770 AF310568 Neisseria meningitidis strain N157/86 prokMSA_id:038467 AF310569 Neisseria meningitidis strain N49/88 prokMSA_id:026122 AF310570 Neisseria meningitidis strain N106/89 prokMSA_id:027717 AF310571 Neisseria meningitidis strain N348/88 prokMSA_id:017115 AF310572 Neisseria meningitidis strain H355 prokMSA_id:030250 AF310573 Neisseria meningitidis strain CU385 prokMSA_id:038242 AF310574 Neisseria meningitidis strain N44/89 prokMSA_id:021424 AF310575 Neisseria meningitidis strain M3005 prokMSA_id:044511 AF310576 Neisseria meningitidis strain M5178 prokMSA_id:019847 AF310577 Neisseria meningitidis strain 539Ch prokMSA_id:038514 AF310578 Neisseria meningitidis strain BB393 prokMSA_id:052748 AF310579 Neisseria meningitidis strain F51/90 prokMSA_id:043867 AF310580 Neisseria meningitidis strain H276 prokMSA_id:031070 AF310581 Neisseria meningitidis strain M2726 prokMSA_id:052091 AF310582 Neisseria meningitidis strain M2727 prokMSA_id:029168 AF310583 Neisseria meningitidis strain M1163 prokMSA_id:032518 AF310584 Neisseria meningitidis strain M3388 prokMSA_id:035344 AF310585 Neisseria meningitidis strain M1367 prokMSA_id:039242 AF310586 Neisseria meningitidis strain M2637 prokMSA_id:047816 AF310587 Neisseria meningitidis strain M4775 prokMSA_id:021847 AF310588 Neisseria meningitidis strain M2642 prokMSA_id:047636 AF310589 Neisseria meningitidis strain M2725 prokMSA_id:052639 AF310590 Neisseria meningitidis strain M7126 prokMSA_id:016842 AF310591 Neisseria meningitidis strain M7139 prokMSA_id:047569 AF310592 Neisseria meningitidis strain M7060 prokMSA_id:034272 AF310593 Neisseria meningitidis strain M2635 prokMSA_id:051363 AF310594 Neisseria meningitidis strain M1366 prokMSA_id:018792 AF310595 Neisseria meningitidis strain M4663 prokMSA_id:032430 AF310596 Neisseria meningitidis strain M2540 prokMSA_id:052412 AF310597 Neisseria meningitidis strain M4660 prokMSA_id:018295 AF310598 Neisseria meningitidis strain M7100 prokMSA_id:020767 AF310599 Neisseria meningitidis strain M6477 prokMSA_id:049696 AF310600 Neisseria meningitidis strain M6266 prokMSA_id:048453 AF310601 Neisseria meningitidis strain M7086 prokMSA_id:035579 AF310602 Neisseria meningitidis strain M7084 prokMSA_id:019723 AF310603 Neisseria meningitidis strain M3729 prokMSA_id:018892 AF310604 Neisseria meningitidis strain M7293 prokMSA_id:039827 AF310605 Neisseria meningitidis strain M7290 prokMSA_id:016455 AF310606 Neisseria meningitidis strain M7260 prokMSA_id:025767 AF310607 Neisseria meningitidis strain M5391 prokMSA_id:036272 AF310608 Neisseria meningitidis strain M4041 prokMSA_id:074719 AF310609 Neisseria meningitidis strain M1154 prokMSA_id:016816 AF310610 Neisseria meningitidis strain M4028 prokMSA_id:041646 AF310611 Neisseria meningitidis strain M7259 prokMSA_id:026013 AF310612 Neisseria meningitidis strain M7092 prokMSA_id:038755 AF310613 Neisseria meningitidis strain M128 prokMSA_id:028076 AF310614 Neisseria meningitidis strain N206/89 prokMSA_id:025266 AF310615 Neisseria meningitidis strain M3742 prokMSA_id:049446 AF320620 Eikenella corrodens prokMSA_id:052665 AF328141 Simonsiella crassa strain ATCC27504T prokMSA_id:034736 AF328142 Simonsiella crassa strain ATCC29446 prokMSA_id:038266 AF328143 Simonsiella crassa strain ATCC29447 prokMSA_id:053370 AF328144 Simonsiella crassa strain ATCC29448 prokMSA_id:043753 AF328145 Simonsiella muelleri strain ATCC29433 prokMSA_id:069998 AF328146 Simonsiella muelleri strain ATCC29441 prokMSA_id:022981 AF328147 Simonsiella muelleri strain ATCC29453T prokMSA_id:023991 AF328148 Simonsiella muelleri strain ATCC29462 prokMSA_id:073756 AF328149 Simonsiella sp. ATCC 29436 prokMSA_id:072999 AF328150 Simonsiella sp. ATCC 29437 prokMSA_id:021796 AF328151 Simonsiella sp. ATCC 29465 prokMSA_id:033892 AF328152 Simonsiella sp. ATCC 27381 prokMSA_id:073115 AF328154 Simonsiella steedae strain ATCC29435 prokMSA_id:021461 AF328155 Simonsiella steedae strain ATCC29445 prokMSA_id:025162 AF328156 Simonsiella steedae strain ATCC29457 prokMSA_id:073533 AF337916 Neisseria meningitidis strain M2371 prokMSA_id:073343 AF337917 Neisseria meningitidis strain M2459 prokMSA_id:026377 AF337918 Neisseria meningitidis strain M2907 prokMSA_id:073972 AF337919 Neisseria meningitidis strain M2377 prokMSA_id:071082 AF337920 Neisseria meningitidis strain M2455 prokMSA_id:035121 AF337921 Neisseria meningitidis strain M2376 prokMSA_id:017519 AF337922 Neisseria meningitidis strain M2373 prokMSA_id:036048 AF337923 Neisseria meningitidis strain M2372 prokMSA_id:048440 AF337924 Neisseria meningitidis strain M2904 prokMSA_id:047374 AF337925 Neisseria meningitidis strain M2893 prokMSA_id:053052 AF337926 Neisseria meningitidis strain M2375 prokMSA_id:047017 AF337927 Neisseria meningitidis strain M2379 prokMSA_id:030205 AF337928 Neisseria meningitidis strain M2374 prokMSA_id:018182 AF337929 Neisseria meningitidis strain M2454 prokMSA_id:019125 AF337930 Neisseria meningitidis strain M2899 prokMSA_id:020579 AF337931 Neisseria meningitidis strain M2901 prokMSA_id:039323 AF337932 Neisseria meningitidis strain M2895 prokMSA_id:027814 AF337933 Neisseria meningitidis strain M2900 prokMSA_id:018508 AF337934 Neisseria meningitidis strain M2910 prokMSA_id:045858 AF337935 Neisseria meningitidis strain M2906 prokMSA_id:042271 AF337936 Neisseria meningitidis strain M2903 prokMSA_id:054178 AF337937 Neisseria meningitidis strain M2381 prokMSA_id:046180 AF337938 Neisseria meningitidis strain M2382 prokMSA_id:016526 AF337939 Neisseria meningitidis strain M2380 prokMSA_id:028871 AF337940 Neisseria meningitidis strain M2378 prokMSA_id:034166 AF337941 Neisseria meningitidis strain M5499 prokMSA_id:024216 AF337942 Neisseria meningitidis strain M5496 prokMSA_id:042057 AF337943 Neisseria meningitidis strain M5494 prokMSA_id:033529 AF337944 Neisseria meningitidis strain M5493 prokMSA_id:040255 AF337945 Neisseria meningitidis strain M2902 prokMSA_id:017166 AF337946 Neisseria meningitidis strain M2456 prokMSA_id:070331 AF366267 Kingella sp. clone DE012 prokMSA_id:073441 AF382240 Neisseria meningitidis strain M7854 prokMSA_id:073383 AF382241 Neisseria meningitidis strain M7857 prokMSA_id:071179 AF382242 Neisseria meningitidis strain M7901 prokMSA_id:072118 AF382243 Neisseria meningitidis strain M7903 prokMSA_id:072684 AF382244 Neisseria meningitidis strain M7895 prokMSA_id:071245 AF382245 Neisseria meningitidis strain M7900 prokMSA_id:073440 AF382246 Neisseria meningitidis strain M7887 prokMSA_id:069826 AF382247 Neisseria meningitidis strain M7904 prokMSA_id:071788 AF382248 Neisseria meningitidis strain M7946 prokMSA_id:070238 AF382249 Neisseria meningitidis strain M8033 prokMSA_id:071555 AF382250 Neisseria meningitidis strain M8034 prokMSA_id:070026 AF382251 Neisseria meningitidis strain M8038 prokMSA_id:071784 AF382252 Neisseria meningitidis strain M8028 prokMSA_id:072596 AF382253 Neisseria meningitidis strain M8064 prokMSA_id:071911 AF382254 Neisseria meningitidis strain M8065 prokMSA_id:073654 AF382255 Neisseria meningitidis strain M8049 prokMSA_id:074427 AF382256 Neisseria meningitidis strain M8051 prokMSA_id:072046 AF382257 Neisseria meningitidis strain M8036 prokMSA_id:069897 AF382258 Neisseria meningitidis strain M8037 prokMSA_id:072662 AF382259 Neisseria meningitidis strain M8063 prokMSA_id:072910 AF382260 Neisseria meningitidis strain M8012 prokMSA_id:070472 AF382261 Neisseria meningitidis strain M8076 prokMSA_id:072141 AF382262 Neisseria meningitidis strain M8052 prokMSA_id:074188 AF382263 Neisseria meningitidis strain M8053 prokMSA_id:072577 AF382264 Neisseria meningitidis strain M8060 prokMSA_id:071622 AF382265 Neisseria meningitidis strain M8062 prokMSA_id:072331 AF382266 Neisseria meningitidis strain M8032 prokMSA_id:073067 AF382267 Neisseria meningitidis strain M8045 prokMSA_id:071593 AF382268 Neisseria meningitidis strain M8047 prokMSA_id:069973 AF382269 Neisseria meningitidis strain M8048 prokMSA_id:071206 AF382270 Neisseria meningitidis strain M8074 prokMSA_id:071244 AF382271 Neisseria meningitidis strain M8073 prokMSA_id:074346 AF382272 Neisseria meningitidis strain M8068 prokMSA_id:073314 AF382273 Neisseria meningitidis strain M8067 prokMSA_id:072961 AF382274 Neisseria meningitidis strain M8066 prokMSA_id:065982 AF382275 Neisseria meningitidis strain M7221 prokMSA_id:065981 AF382276 Neisseria meningitidis strain M7339 prokMSA_id:065980 AF382277 Neisseria meningitidis strain M7542 prokMSA_id:065979 AF382278 Neisseria meningitidis strain M7794 prokMSA_id:065977 AF382279 Neisseria meningitidis strain M7795 prokMSA_id:065978 AF382280 Neisseria meningitidis strain M7796 prokMSA_id:065976 AF382281 Neisseria meningitidis strain M7797 prokMSA_id:065975 AF382282 Neisseria meningitidis strain M7798 prokMSA_id:065974 AF382283 Neisseria meningitidis strain M7799 prokMSA_id:065973 AF382284 Neisseria meningitidis strain M7800 prokMSA_id:065972 AF382285 Neisseria meningitidis strain M7801 prokMSA_id:056037 AF382286 Neisseria meningitidis strain M7841 prokMSA_id:065971 AF382287 Neisseria meningitidis strain M7842 prokMSA_id:065970 AF382288 Neisseria meningitidis strain M7843 prokMSA_id:065969 AF382289 Neisseria meningitidis strain M7844 prokMSA_id:056629 AF382290 Neisseria meningitidis strain M7834 prokMSA_id:065968 AF382291 Neisseria meningitidis strain M7590 prokMSA_id:065967 AF382292 Neisseria meningitidis strain M7591 prokMSA_id:056706 AF382293 Neisseria meningitidis strain M8017 prokMSA_id:072069 AF382294 Neisseria meningitidis strain M7890 prokMSA_id:065965 AF382295 Neisseria meningitidis strain M7905 prokMSA_id:065963 AF382296 Neisseria meningitidis strain M7858 prokMSA_id:065962 AF382297 Neisseria meningitidis strain M7859 prokMSA_id:065964 AF382298 Neisseria meningitidis strain M7902 prokMSA_id:065961 AF382299 Neisseria meningitidis strain M7824 prokMSA_id:065960 AF382300 Neisseria meningitidis strain M7891 prokMSA_id:065959 AF382301 Neisseria meningitidis strain M7825 prokMSA_id:065958 AF382302 Neisseria meningitidis strain M7855 prokMSA_id:065957 AF382303 Neisseria meningitidis strain M7892 prokMSA_id:065956 AF382304 Neisseria meningitidis strain M7894 prokMSA_id:070564 AF382305 Neisseria meningitidis strain M7860 prokMSA_id:065954 AF382306 Neisseria meningitidis strain M7888 prokMSA_id:065953 AF382307 Neisseria meningitidis strain M7925 prokMSA_id:065952 AF382308 Neisseria meningitidis strain M7271 prokMSA_id:065951 AF382309 Neisseria meningitidis strain M7999 prokMSA_id:065950 AF382310 Neisseria meningitidis strain M8000 prokMSA_id:065949 AF382311 Neisseria meningitidis strain M8001 prokMSA_id:065948 AF382312 Neisseria meningitidis strain M8002 prokMSA_id:065947 AF382313 Neisseria meningitidis strain M8031 prokMSA_id:065946 AF382314 Neisseria meningitidis strain M8042 prokMSA_id:074729 AF382315 Neisseria meningitidis strain M8075 prokMSA_id:065945 AF382316 Neisseria meningitidis strain M7927 prokMSA_id:073049 AF385496 sp. oral clone EW049 prokMSA_id:074115 AF385498 sp. oral clone EW053 prokMSA_id:021966 AF395323 isopod gut clone RKPsF prokMSA_id:051956 AF395911 Neisseria weaveri isolate VA6362grgr_2001 prokMSA_id:069898 AF398241 Neisseria meningitidis strain M121 prokMSA_id:062832 AF398242 Neisseria meningitidis strain M746 prokMSA_id:062829 AF398243 Neisseria meningitidis strain M1110 prokMSA_id:055872 AF398244 Neisseria meningitidis strain M4012 prokMSA_id:062830 AF398245 Neisseria meningitidis strain M3951 prokMSA_id:056009 AF398246 Neisseria meningitidis strain M3873 prokMSA_id:062828 AF398247 Neisseria meningitidis strain M4320 prokMSA_id:056677 AF398248 Neisseria meningitidis strain M7933 prokMSA_id:062827 AF398249 Neisseria meningitidis strain M7926 prokMSA_id:062825 AF398250 Neisseria meningitidis strain M1402 prokMSA_id:062826 AF398251 Neisseria meningitidis strain M4364 prokMSA_id:062824 AF398252 Neisseria meningitidis strain M5283 prokMSA_id:062823 AF398253 Neisseria meningitidis strain M5285 prokMSA_id:062821 AF398254 Neisseria meningitidis strain M5286 prokMSA_id:062822 AF398255 Neisseria meningitidis strain M463 prokMSA_id:062820 AF398256 Neisseria meningitidis strain M4219 prokMSA_id:062819 AF398257 Neisseria meningitidis strain M4580 prokMSA_id:062818 AF398258 Neisseria meningitidis strain M7930 prokMSA_id:062816 AF398259 Neisseria meningitidis strain M7725 prokMSA_id:062817 AF398260 Neisseria meningitidis strain M7731 prokMSA_id:062815 AF398261 Neisseria meningitidis strain M7922 prokMSA_id:055802 AF398262 Neisseria meningitidis strain M7923 prokMSA_id:062814 AF398263 Neisseria meningitidis strain M7743 prokMSA_id:062812 AF398264 Neisseria meningitidis strain M7723 prokMSA_id:062813 AF398265 Neisseria meningitidis strain M7928 prokMSA_id:062811 AF398266 Neisseria meningitidis strain M7729 prokMSA_id:062810 AF398267 Neisseria meningitidis strain M7920 prokMSA_id:062809 AF398268 Neisseria meningitidis strain M7733 prokMSA_id:062808 AF398269 Neisseria meningitidis strain M7924 prokMSA_id:062807 AF398270 Neisseria meningitidis strain M7932 prokMSA_id:062806 AF398271 Neisseria meningitidis strain M7719 prokMSA_id:062805 AF398272 Neisseria meningitidis strain M7722 prokMSA_id:062803 AF398273 Neisseria meningitidis strain M1168 prokMSA_id:062804 AF398274 Neisseria meningitidis strain M7541 prokMSA_id:062802 AF398275 Neisseria meningitidis strain M812 prokMSA_id:062801 AF398276 Neisseria meningitidis strain M4207 prokMSA_id:062800 AF398277 Neisseria meningitidis strain M4256 prokMSA_id:062799 AF398278 Neisseria meningitidis strain M1169 prokMSA_id:062798 AF398279 Neisseria meningitidis strain M1191 prokMSA_id:062797 AF398280 Neisseria meningitidis strain M4361 prokMSA_id:062796 AF398281 Neisseria meningitidis strain M4579 prokMSA_id:062795 AF398282 Neisseria meningitidis strain M2531 prokMSA_id:062794 AF398283 Neisseria meningitidis strain M2818 prokMSA_id:062793 AF398284 Neisseria meningitidis strain M7448 prokMSA_id:072115 AF398285 Neisseria meningitidis strain M4595 prokMSA_id:062791 AF398286 Neisseria meningitidis strain M1472 prokMSA_id:062790 AF398287 Neisseria meningitidis strain M7510 prokMSA_id:062789 AF398288 Neisseria meningitidis strain M7501 prokMSA_id:070307 AF398289 Neisseria meningitidis strain M7721 prokMSA_id:062787 AF398290 Neisseria meningitidis strain M7727 prokMSA_id:062786 AF398291 Neisseria meningitidis strain M7732 prokMSA_id:062785 AF398292 Neisseria meningitidis strain M7714 prokMSA_id:062784 AF398293 Neisseria meningitidis strain M7717 prokMSA_id:062782 AF398294 Neisseria meningitidis strain M7736 prokMSA_id:062783 AF398295 Neisseria meningitidis strain M7737 prokMSA_id:062781 AF398296 Neisseria meningitidis strain M7740 prokMSA_id:062779 AF398297 Neisseria meningitidis strain M7741 prokMSA_id:062780 AF398298 Neisseria meningitidis strain M7748 prokMSA_id:062778 AF398299 Neisseria meningitidis strain M7744 prokMSA_id:062776 AF398300 Neisseria meningitidis strain M7745 prokMSA_id:062777 AF398301 Neisseria meningitidis strain M7918 prokMSA_id:062775 AF398302 Neisseria meningitidis strain M7750 prokMSA_id:062773 AF398303 Neisseria meningitidis strain M7746 prokMSA_id:062774 AF398304 Neisseria meningitidis strain M7747 prokMSA_id:062772 AF398305 Neisseria meningitidis strain M7751 prokMSA_id:062771 AF398306 Neisseria meningitidis strain M7929 prokMSA_id:056148 AF398307 Neisseria meningitidis strain M7485 prokMSA_id:062770 AF398308 Neisseria meningitidis strain M7509 prokMSA_id:062767 AF398309 Neisseria meningitidis strain M7921 prokMSA_id:062766 AF398310 Neisseria meningitidis strain M7724 prokMSA_id:062765 AF398311 Neisseria meningitidis strain M7931 prokMSA_id:062769 AF398312 Neisseria meningitidis strain M7739 prokMSA_id:062764 AF398313 Neisseria meningitidis strain M7919 prokMSA_id:074070 AF398314 Neisseria meningitidis strain M8171 prokMSA_id:072337 AF398315 Neisseria meningitidis strain M8172 prokMSA_id:062762 AF398316 Neisseria meningitidis strain M8251 prokMSA_id:055259 AF398317 Neisseria meningitidis strain M8252 prokMSA_id:062761 AF398318 Neisseria meningitidis strain M8323 prokMSA_id:062760 AF398319 Neisseria meningitidis strain M8325 prokMSA_id:062759 AF398320 Neisseria meningitidis strain M8237 prokMSA_id:062758 AF398321 Neisseria meningitidis strain M8236 prokMSA_id:062757 AF398322 Neisseria meningitidis strain N.753/00 prokMSA_id:062756 AF398323 Neisseria meningitidis strain N.174/00 prokMSA_id:055998 AF398324 Neisseria meningitidis strain N.31/00 prokMSA_id:062755 AF398325 Neisseria meningitidis strain N.33/00 prokMSA_id:055347 AF398326 Neisseria meningitidis strain N.623/99 prokMSA_id:062754 AF398327 Neisseria meningitidis strain N.726/99 prokMSA_id:055247 AF398328 Neisseria meningitidis strain N.343/99 prokMSA_id:062753 AF398329 Neisseria meningitidis strain N.685/99 prokMSA_id:062752 AF399845 Neisseria meningitidis strain M8368F10 prokMSA_id:060541 AF409913 Neisseria meningitidis strain M3782 prokMSA_id:060539 AF409914 Neisseria meningitidis strain M3734 prokMSA_id:060540 AF409915 Neisseria meningitidis strain M1019 prokMSA_id:060536 AF409916 Neisseria meningitidis strain M3030 prokMSA_id:060538 AF409917 Neisseria meningitidis strain M4215 prokMSA_id:060537 AF409918 Neisseria meningitidis strain M4102 prokMSA_id:060535 AF409919 Neisseria meningitidis strain M4209 prokMSA_id:060534 AF409920 Neisseria meningitidis strain M4094 prokMSA_id:060533 AF409921 Neisseria meningitidis strain M2932 prokMSA_id:060531 AF409922 Neisseria meningitidis strain M4210 prokMSA_id:060532 AF409923 Neisseria meningitidis strain M5203 prokMSA_id:060528 AF409924 Neisseria meningitidis strain M2916 prokMSA_id:060529 AF409925 Neisseria meningitidis strain M2922 prokMSA_id:060527 AF409926 Neisseria meningitidis strain M2934 prokMSA_id:060525 AF409927 Neisseria meningitidis strain M2929 prokMSA_id:060530 AF409928 Neisseria meningitidis strain M2925 prokMSA_id:060523 AF409929 Neisseria meningitidis strain M5182 prokMSA_id:060526 AF409930 Neisseria meningitidis strain M5193 prokMSA_id:060524 AF409931 Neisseria meningitidis strain M5199 prokMSA_id:060515 AF409932 Neisseria meningitidis strain M5798 prokMSA_id:060516 AF409933 Neisseria meningitidis strain M1569 prokMSA_id:060520 AF409934 Neisseria meningitidis strain M1010 prokMSA_id:060521 AF409935 Neisseria meningitidis strain M4211 prokMSA_id:056689 AF409936 Neisseria meningitidis strain M1153 prokMSA_id:060519 AF409937 Neisseria meningitidis strain M4646 prokMSA_id:060518 AF409938 Neisseria meningitidis strain M4644 prokMSA_id:060522 AF409939 Neisseria meningitidis strain M4647 prokMSA_id:060517 AF409940 Neisseria meningitidis strain M4643 prokMSA_id:072478 AF409941 Neisseria meningitidis strain M1417 prokMSA_id:060509 AF409942 Neisseria meningitidis strain M574 prokMSA_id:060511 AF409943 Neisseria meningitidis strain M1141 prokMSA_id:060507 AF409944 Neisseria meningitidis strain M2671 prokMSA_id:060508 AF409945 Neisseria meningitidis strain M4645 prokMSA_id:060510 AF409946 Neisseria meningitidis strain M690 prokMSA_id:016392 AF429203 clone CR99-2-17 prokMSA_id:053760 AF479577 Neisseria subflava NJ9702 prokMSA_id:016823 AF479578 Neisseria subflava NJ9703 prokMSA_id:041583 AF479757 Neisseria meningitidis strain M8562 prokMSA_id:058757 AF521621 Neisseria meningitidis strain N.944/00 prokMSA_id:058748 AF521622 Neisseria meningitidis strain N.977/00 prokMSA_id:058747 AF521623 Neisseria meningitidis strain N.656/99 prokMSA_id:058745 AF521624 Neisseria meningitidis strain N.712/99 prokMSA_id:058746 AF521625 Neisseria meningitidis strain N.02/01 prokMSA_id:058742 AF521626 Neisseria meningitidis strain N.04/01 prokMSA_id:055591 AF521627 Neisseria meningitidis strain N.40/01 prokMSA_id:058743 AF521628 Neisseria meningitidis strain N.294/01 prokMSA_id:058741 AF521629 Neisseria meningitidis strain N.357/01 prokMSA_id:058739 AF521630 Neisseria meningitidis strain N.392/01 prokMSA_id:058740 AF521631 Neisseria meningitidis strain N.461/01 prokMSA_id:058738 AF521632 Neisseria meningitidis strain N.480/01 prokMSA_id:058737 AF521633 Neisseria meningitidis strain N.495/01 prokMSA_id:058735 AF521634 Neisseria meningitidis strain N.501/01 prokMSA_id:058736 AF521635 Neisseria meningitidis strain N.658/00 prokMSA_id:058734 AF521636 Neisseria meningitidis strain N.111/00 prokMSA_id:058250 AF522554 Neisseria meningitidis strain N.186/00 prokMSA_id:058248 AF522555 Neisseria meningitidis strain N.211/00 prokMSA_id:058247 AF522556 Neisseria meningitidis strain N.298/00 prokMSA_id:058243 AF522557 Neisseria meningitidis strain N.430/00 prokMSA_id:056358 AF522558 Neisseria meningitidis strain N.527/00 prokMSA_id:058233 AF522559 Neisseria meningitidis strain N.667/00 prokMSA_id:056303 AF522560 Neisseria meningitidis strain N.668/00 prokMSA_id:058234 AF522561 Neisseria meningitidis strain N.717/00 prokMSA_id:058226 AF522562 Neisseria meningitidis strain N.727/00 prokMSA_id:058228 AF522563 Neisseria meningitidis strain N.728/00 prokMSA_id:058227 AF522564 Neisseria meningitidis strain N.796/00 prokMSA_id:058229 AF522565 Neisseria meningitidis strain N.825/00 prokMSA_id:058224 AF522566 Neisseria meningitidis strain N.837/00 prokMSA_id:058225 AF522567 Neisseria meningitidis strain N.876/00 prokMSA_id:058223 AF522568 Neisseria meningitidis strain N.877/00 prokMSA_id:056506 AF522569 Neisseria meningitidis strain N.885/00 prokMSA_id:058221 AF522570 Neisseria meningitidis strain N.892/00 prokMSA_id:058222 AF522571 Neisseria meningitidis strain N.1113/00 prokMSA_id:058219 AF522572 Neisseria meningitidis strain N.1116/00 prokMSA_id:058220 AF522573 Neisseria meningitidis strain N.1212/00 prokMSA_id:058217 AF522574 Neisseria meningitidis strain N.1213/00 prokMSA_id:058215 AF522575 Neisseria meningitidis strain N.505/99 prokMSA_id:058218 AF522576 Neisseria meningitidis strain N.14/99 prokMSA_id:058216 AF522577 Neisseria meningitidis strain N.133/99 prokMSA_id:058214 AF522578 Neisseria meningitidis strain N.173/99 prokMSA_id:058213 AF522579 Neisseria meningitidis strain N.191/99 prokMSA_id:058212 AF522580 Neisseria meningitidis strain N.248/99 prokMSA_id:058210 AF522581 Neisseria meningitidis strain N.337/99 prokMSA_id:058211 AF522582 Neisseria meningitidis strain N.876/99 prokMSA_id:056173 AF522583 Neisseria meningitidis strain N.923/99 prokMSA_id:056051 AF522584 Neisseria meningitidis strain N.233/97 prokMSA_id:058208 AF522585 Neisseria meningitidis strain N.253/88 prokMSA_id:058207 AF522586 Neisseria meningitidis strain N.253/97 prokMSA_id:058209 AF522587 Neisseria meningitidis strain N.590/97 prokMSA_id:058205 AF522588 Neisseria meningitidis strain N.969/97 prokMSA_id:058206 AF522589 Neisseria meningitidis strain N.971/97 prokMSA_id:058204 AF522590 Neisseria meningitidis strain N.1243/95 prokMSA_id:058203 AF522591 Neisseria meningitidis strain N.429/94 prokMSA_id:058202 AF522592 Neisseria meningitidis strain N.884/94 prokMSA_id:058199 AF522593 Neisseria meningitidis strain N.260/92 prokMSA_id:058201 AF522594 Neisseria meningitidis strain N.1020/92 prokMSA_id:058196 AF522595 Neisseria meningitidis strain N.730/91 prokMSA_id:058198 AF522596 Neisseria meningitidis strain N.1097/90 prokMSA_id:058200 AF522597 Neisseria meningitidis strain N.295/01 prokMSA_id:058197 AF522598 Neisseria meningitidis strain N.356/01 prokMSA_id:058195 AF522599 Neisseria meningitidis strain N.502/01 prokMSA_id:058194 AF522600 Neisseria meningitidis strain N.529/01 prokMSA_id:056441 AF522601 Neisseria meningitidis strain N.581/01 prokMSA_id:058192 AF522602 Neisseria meningitidis strain N.617/01 prokMSA_id:058193 AF522603 Neisseria meningitidis strain N.637/01 prokMSA_id:055940 AF522604 Neisseria meningitidis strain N.849/01 prokMSA_id:058191 AF522605 Neisseria meningitidis strain N.855/01 prokMSA_id:058189 AF522606 Neisseria meningitidis strain N.952/01 prokMSA_id:058190 AF522607 Neisseria meningitidis strain N.955/01 prokMSA_id:058188 AF522608 Neisseria meningitidis strain N.957/01 prokMSA_id:058187 AF522609 Neisseria meningitidis strain N.958/01 prokMSA_id:058185 AF522610 Neisseria meningitidis strain N.451/01 prokMSA_id:058186 AF522611 Neisseria meningitidis strain N.528/01 prokMSA_id:058184 AF522612 Neisseria meningitidis strain N.564/01 prokMSA_id:055507 AF522613 Neisseria meningitidis strain N.580/01 prokMSA_id:058181 AF522614 Neisseria meningitidis strain N.820/01 prokMSA_id:058179 AF522615 Neisseria meningitidis strain N.969/01 prokMSA_id:058183 AF522616 Neisseria meningitidis strain N.985/01 prokMSA_id:058180 AF522617 Neisseria meningitidis strain N.1005/01 prokMSA_id:058182 AF522618 Neisseria meningitidis strain N.1018/01 prokMSA_id:058178 AF522619 Neisseria meningitidis strain N.1020/01 prokMSA_id:058176 AF522620 Neisseria meningitidis strain N.1037/01 prokMSA_id:058177 AF522621 Neisseria meningitidis strain N.944/88 prokMSA_id:058174 AF522622 Neisseria meningitidis strain N.1059/01 prokMSA_id:058173 AF522623 Neisseria meningitidis strain N.1072/01 prokMSA_id:058175 AF522624 Neisseria meningitidis strain N.1109/01 prokMSA_id:058172 AF522625 Neisseria meningitidis strain N.1112/01 prokMSA_id:055512 AF522626 Neisseria meningitidis strain N.539/00 prokMSA_id:058170 AF522627 Neisseria meningitidis strain N.928/00 prokMSA_id:058171 AF522628 Neisseria meningitidis strain N.700/00 prokMSA_id:058169 AF522629 Neisseria meningitidis strain N.35/00 prokMSA_id:058168 AF522630 Neisseria meningitidis strain N.114/00 prokMSA_id:058167 AF522631 Neisseria meningitidis strain N.639/00 prokMSA_id:058166 AF522632 Neisseria meningitidis strain N.818/00 prokMSA_id:058165 AF522633 Neisseria meningitidis strain N.854/99 prokMSA_id:058164 AF522634 Neisseria meningitidis strain N.429/01 prokMSA_id:058163 AF522635 Neisseria meningitidis strain N.729/01 prokMSA_id:058162 AF522636 Neisseria meningitidis strain N.611/01 prokMSA_id:058160 AF522637 Neisseria meningitidis strain N.318/01 prokMSA_id:058161 AF522638 Neisseria meningitidis strain N.203/01 prokMSA_id:056520 AF522639 Neisseria meningitidis strain N.55/01 prokMSA_id:058159 AF522640 Neisseria meningitidis strain N.364/01 prokMSA_id:058158 AF522641 Neisseria meningitidis strain N.536/01 prokMSA_id:055548 AF522642 Neisseria meningitidis strain N.352/01 prokMSA_id:006406 AJ239278 Neisseria elongata subsp. glycolytica str. J2. prokMSA_id:006400 AJ239279 Neisseria mucosa str. M5. prokMSA_id:006428 AJ239280 Neisseria flavescens str. LNP444. prokMSA_id:006437 AJ239281 Neisseria pharyngis NCTC 4590. prokMSA_id:006401 AJ239282 Neisseria mucosa str. LNP405. prokMSA_id:006464 AJ239283 Neisseria lactamica str. L18. prokMSA_id:006465 AJ239284 Neisseria lactamica str. L20. prokMSA_id:006466 AJ239285 Neisseria lactamica str. L22. prokMSA_id:006467 AJ239286 Neisseria lactamica NCTC 10617 . prokMSA_id:006438 AJ239287 Neisseria cinerea str. LNP1646. prokMSA_id:006399 AJ239288 Neisseria animalis NCTC 10212. prokMSA_id:006439 AJ239289 Neisseria polysaccharea NCTC 11858. prokMSA_id:006440 AJ239290 Neisseria meningitidis str. B17. prokMSA_id:006429 AJ239291 Neisseria subflava str. U37. prokMSA_id:006441 AJ239292 Neisseria sicca str. Q13. prokMSA_id:006442 AJ239293 Neisseria sicca str. Q28. prokMSA_id:006443 AJ239294 Neisseria sicca str. Q29. prokMSA_id:006430 AJ239295 Neisseria perflava str. U15. prokMSA_id:006468 AJ239296 Neisseria lactamica str. L19. prokMSA_id:006407 AJ239297 Neisseria elongata str. I1. prokMSA_id:006444 AJ239298 Neisseria polysaccharea str. P8. prokMSA_id:006445 AJ239299 Neisseria cinerea str. F1. prokMSA_id:006446 AJ239300 Neisseria cinerea str. F3. prokMSA_id:006447 AJ239301 Neisseria flava str. U40. prokMSA_id:006408 AJ239302 Neisseria elongata str. I3. prokMSA_id:006409 AJ239303 Neisseria elongata str. I4. prokMSA_id:006469 AJ239304 Neisseria gonorrhoeae str. FA19. prokMSA_id:006470 AJ239305 Neisseria lactamica str. L13. prokMSA_id:006448 AJ239306 Neisseria meningitidis str. M470. prokMSA_id:006449 AJ239307 Neisseria meningitidis str. 44/76. prokMSA_id:006450 AJ239308 Neisseria meningitidis str. HF116. prokMSA_id:006451 AJ239309 Neisseria meningitidis str. HF46. prokMSA_id:006452 AJ239310 Neisseria meningitidis str. N94II. prokMSA_id:006453 AJ239311 Neisseria meningitidis str. HF130. prokMSA_id:006471 AJ239312 Neisseria meningitidis str. S3446. prokMSA_id:006454 AJ239313 Neisseria lactamica str. L17. prokMSA_id:006472 AJ239314 Neisseria polysaccharea str. P7. prokMSA_id:006455 AJ239315 Neisseria polysaccharea str. P7. prokMSA_id:006394 AJ247212 Eikenella corrodens DSM 8340. prokMSA_id:006395 AJ247213 Eikenella corrodens str. Oslo 31745/80. prokMSA_id:006474 AJ247215 Kingella denitrificans NCTC 10997. prokMSA_id:006416 AJ247234 Neisseria animalis NCTC 10212. prokMSA_id:006434 AJ247236 Neisseria cinerea DSM 4630. prokMSA_id:006431 AJ247237 Neisseria flava str. Berger 122. prokMSA_id:006459 AJ247238 Neisseria gonorrhoeae DSM 9188. prokMSA_id:006460 AJ247239 Neisseria gonorrhoeae DSM 9189. prokMSA_id:006461 AJ247240 Neisseria iguanae ATCC 51483. prokMSA_id:006462 AJ247241 Neisseria lactamica DSM 4691. prokMSA_id:006463 AJ247242 Neisseria lactamica str. Berger 116. prokMSA_id:006419 AJ247243 Neisseria macacae str. M-740 ATCC 33926 . prokMSA_id:006435 AJ247244 Neisseria meningitidis DSM 10036. prokMSA_id:006436 AJ247245 Neisseria meningitidis ATCC 35559. prokMSA_id:006425 AJ247246 Neisseria perflava LMG 5284. prokMSA_id:006426 AJ247247 Neisseria perflava str. Berger 120. prokMSA_id:006421 AJ247248 Neisseria sicca LMG 5290. prokMSA_id:006427 AJ247249 Neisseria subflava LMG 5313. prokMSA_id:006397 AJ247250 Neisseria weaveri ATCC 51223. prokMSA_id:006398 AJ247251 Neisseria weaveri LMG 5135. prokMSA_id:006403 AJ247252 Neisseria elongata subsp. elongata LMG 5124. prokMSA_id:006404 AJ247253 Neisseria elongata subsp. glycolytica NCTC 11050. prokMSA_id:006405 AJ247254 Neisseria elongata subsp. nitroreducens ATCC 49377. prokMSA_id:006420 AJ247255 Neisseria mucosa subsp. mucosa DSM 4631. prokMSA_id:006389 AJ247256 Neisseria mucosa subsp. heidelbergiensis str. Berger 114. prokMSA_id:006422 AJ247257 Neisseria mucosa subsp. mucosa ATCC 19696. prokMSA_id:006390 AJ247258 Neisseria mucosa subsp. heidelbergiensis ATCC 25999. prokMSA_id:006423 AJ247259 Neisseria mucosa subsp. mucosa str. Berger 112. prokMSA_id:006391 AJ247260 Neisseria mucosa subsp. mucosa LMG 5136. prokMSA_id:043754 AJ269514 Neisseria weaveri strain MOR 32 prokMSA_id:018280 AJ404545 Neisseria NS2 prokMSA_id:076751 AJ534660 beta clone S15A-MN33 prokMSA_id:094716 AJ583179 beta- clone S15D-MN120 prokMSA_id:058399 AL162752 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 1/7 prokMSA_id:052086 AL162753 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 2/7 prokMSA_id:058397 AL162757 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 6/7 prokMSA_id:058398 AL162758 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 7/7 prokMSA_id:072429 AY005023 Neisseria sp. oral clone AP085 prokMSA_id:073021 AY005024 Neisseria sp. oral clone AP067 prokMSA_id:050919 AY005025 Neisseria sp. oral clone AP015 prokMSA_id:018996 AY005026 Neisseria sp. oral clone AP060 prokMSA_id:039650 AY005027 Neisseria sp. oral clone AP132 prokMSA_id:053569 AY005028 Neisseria sp. oral strain B33KA prokMSA_id:038478 AY037605 soil clone S082 prokMSA_id:055245 AY057993 Neisseria weaveri prokMSA_id:047990 AY064548 Neisseria sp. CCUG 45853 prokMSA_id:063117 AY093465 clone MB-A2-115 prokMSA_id:059690 AY132014 Neisseria meningitidis strain M9351 prokMSA_id:056153 AY132015 Neisseria meningitidis strain M9350 prokMSA_id:059691 AY132016 Neisseria meningitidis strain M9306 prokMSA_id:059688 AY132017 Neisseria meningitidis strain M9311 prokMSA_id:059689 AY132018 Neisseria meningitidis strain M9305 prokMSA_id:059687 AY132019 Neisseria meningitidis strain M9302 prokMSA_id:059686 AY132020 Neisseria meningitidis strain M9299 prokMSA_id:059685 AY132021 Neisseria meningitidis strain M9300 prokMSA_id:059684 AY132022 Neisseria meningitidis strain M9293 prokMSA_id:059683 AY132023 Neisseria meningitidis strain M9292 prokMSA_id:059682 AY132024 Neisseria meningitidis strain M9296 prokMSA_id:059679 AY132025 Neisseria meningitidis strain M9303 prokMSA_id:059677 AY132026 Neisseria meningitidis strain M9301 prokMSA_id:059678 AY132027 Neisseria meningitidis strain M9295 prokMSA_id:059681 AY132028 Neisseria meningitidis strain M9294 prokMSA_id:059676 AY132029 Neisseria meningitidis strain M9298 prokMSA_id:059680 AY132030 Neisseria meningitidis strain M9297 prokMSA_id:059675 AY132031 Neisseria meningitidis strain M9291 prokMSA_id:059674 AY132032 Neisseria meningitidis strain M9290 prokMSA_id:069850 AY132033 Neisseria meningitidis strain M9259 prokMSA_id:055515 AY132034 Neisseria meningitidis strain M9262 prokMSA_id:059673 AY132035 Neisseria meningitidis strain M9288 prokMSA_id:059671 AY132036 Neisseria meningitidis strain M9264 prokMSA_id:056138 AY132037 Neisseria meningitidis strain M9255 prokMSA_id:059672 AY132038 Neisseria meningitidis strain M9235 prokMSA_id:059669 AY132039 Neisseria meningitidis strain M9280 prokMSA_id:059670 AY132040 Neisseria meningitidis strain M9279 prokMSA_id:059667 AY132041 Neisseria meningitidis strain M9281 prokMSA_id:059668 AY132042 Neisseria meningitidis strain M9282 prokMSA_id:059665 AY132043 Neisseria meningitidis strain M9284 prokMSA_id:059666 AY132044 Neisseria meningitidis strain M9287 prokMSA_id:059664 AY132045 Neisseria meningitidis strain M9286 prokMSA_id:059663 AY132046 Neisseria meningitidis strain M9285 prokMSA_id:059660 AY132047 Neisseria meningitidis strain M9278 prokMSA_id:059662 AY132048 Neisseria meningitidis strain M9289 prokMSA_id:059661 AY132049 Neisseria meningitidis strain M9276 prokMSA_id:059658 AY132050 Neisseria meningitidis strain M9275 prokMSA_id:056674 AY132051 Neisseria meningitidis strain M9274 prokMSA_id:059659 AY132052 Neisseria meningitidis strain M9273 prokMSA_id:059657 AY132053 Neisseria meningitidis strain M9272 prokMSA_id:059656 AY132054 Neisseria meningitidis strain M9271 prokMSA_id:059655 AY132055 Neisseria meningitidis strain M9270 prokMSA_id:059651 AY132056 Neisseria meningitidis strain M9269 prokMSA_id:059653 AY132057 Neisseria meningitidis strain M9268 prokMSA_id:056579 AY132058 Neisseria meningitidis strain M9267 prokMSA_id:059654 AY132059 Neisseria meningitidis strain M9266 prokMSA_id:059650 AY132060 Neisseria meningitidis strain M9265 prokMSA_id:056288 AY132061 Neisseria meningitidis strain M9263 prokMSA_id:059652 AY132062 Neisseria meningitidis strain M9261 prokMSA_id:059649 AY132063 Neisseria meningitidis strain M9260 prokMSA_id:059648 AY132064 Neisseria meningitidis strain M9254 prokMSA_id:059647 AY132065 Neisseria meningitidis strain M9253 prokMSA_id:059646 AY132066 Neisseria meningitidis strain M9251 prokMSA_id:059645 AY132067 Neisseria meningitidis strain M9249 prokMSA_id:059644 AY132068 Neisseria meningitidis strain M7883 prokMSA_id:059642 AY132069 Neisseria meningitidis strain M9242 prokMSA_id:059643 AY132070 Neisseria meningitidis strain M9244 prokMSA_id:059641 AY132071 Neisseria meningitidis strain M9245 prokMSA_id:059639 AY132072 Neisseria meningitidis strain M9236 prokMSA_id:059640 AY132073 Neisseria meningitidis strain M9237 prokMSA_id:074639 AY132074 Neisseria meningitidis strain M9238 prokMSA_id:055337 AY132075 Neisseria meningitidis strain M9239 prokMSA_id:055886 AY132076 Neisseria meningitidis strain M9241 prokMSA_id:059638 AY132077 Neisseria meningitidis strain M9252 prokMSA_id:055459 AY132078 Neisseria meningitidis strain M9250 prokMSA_id:059637 AY132079 Neisseria meningitidis strain M9258 prokMSA_id:059636 AY132080 Neisseria meningitidis strain M9256 prokMSA_id:059635 AY132081 Neisseria meningitidis strain M9257 prokMSA_id:059633 AY132082 Neisseria meningitidis strain M9102 prokMSA_id:055997 AY132083 Neisseria meningitidis strain M9095 prokMSA_id:059634 AY132084 Neisseria meningitidis strain M9096 prokMSA_id:069908 AY132085 Neisseria meningitidis strain M9097 prokMSA_id:059632 AY132086 Neisseria meningitidis strain M9098 prokMSA_id:059630 AY132087 Neisseria meningitidis strain M9099 prokMSA_id:059628 AY132088 Neisseria meningitidis strain M9104 prokMSA_id:059629 AY132089 Neisseria meningitidis strain M9103 prokMSA_id:059627 AY132090 Neisseria meningitidis strain M9032 prokMSA_id:059624 AY132091 Neisseria meningitidis strain M9031 prokMSA_id:059626 AY132092 Neisseria meningitidis strain M9030 prokMSA_id:059625 AY132093 Neisseria meningitidis strain M9029 prokMSA_id:059622 AY132094 Neisseria meningitidis strain M9028 prokMSA_id:059623 AY132095 Neisseria meningitidis strain M9027 prokMSA_id:059621 AY132096 Neisseria meningitidis strain M9026 prokMSA_id:059617 AY132097 Neisseria meningitidis strain M9025 prokMSA_id:059619 AY132098 Neisseria meningitidis strain M9023 prokMSA_id:059620 AY132099 Neisseria meningitidis strain M9022 prokMSA_id:055864 AY132100 Neisseria meningitidis strain M9024 prokMSA_id:059618 AY132101 Neisseria meningitidis strain M9021 prokMSA_id:056344 AY132102 Neisseria meningitidis strain M455 prokMSA_id:059616 AY132103 Neisseria meningitidis strain M8830 prokMSA_id:059615 AY132104 Neisseria meningitidis strain M8829 prokMSA_id:059614 AY132105 Neisseria meningitidis strain M8800 prokMSA_id:059613 AY132106 Neisseria meningitidis strain M8799 prokMSA_id:059612 AY132107 Neisseria meningitidis strain M8798 prokMSA_id:056107 AY132108 Neisseria meningitidis strain M8861 prokMSA_id:059609 AY132109 Neisseria meningitidis strain M8860 prokMSA_id:059608 AY132110 Neisseria meningitidis strain M8565 prokMSA_id:059611 AY132111 Neisseria meningitidis strain M8569 prokMSA_id:059610 AY132112 Neisseria meningitidis strain M8568 prokMSA_id:059607 AY132113 Neisseria meningitidis strain M8567 prokMSA_id:059606 AY132114 Neisseria meningitidis strain M8563 prokMSA_id:055968 AY132115 Neisseria meningitidis strain M8561 prokMSA_id:059605 AY132116 Neisseria meningitidis strain M8600 prokMSA_id:059604 AY132117 Neisseria meningitidis strain M8599 prokMSA_id:059603 AY132118 Neisseria meningitidis strain M8575 prokMSA_id:059602 AY132119 Neisseria meningitidis strain M8574 prokMSA_id:059601 AY132120 Neisseria meningitidis strain M8573 prokMSA_id:059600 AY132121 Neisseria meningitidis strain M8571 prokMSA_id:059598 AY132122 Neisseria meningitidis strain M8576 prokMSA_id:059599 AY132123 Neisseria meningitidis strain M8570 prokMSA_id:059597 AY132124 Neisseria meningitidis strain M8566 prokMSA_id:059596 AY132125 Neisseria meningitidis strain M8559 prokMSA_id:056646 AY132126 Neisseria meningitidis strain M8557 prokMSA_id:059595 AY132127 Neisseria meningitidis strain M8560 prokMSA_id:059594 AY132128 Neisseria meningitidis strain M8572 prokMSA_id:059593 AY132129 Neisseria meningitidis strain M8564 prokMSA_id:059591 AY132130 Neisseria meningitidis strain M8601 prokMSA_id:059592 AY132131 Neisseria meningitidis strain M8594 prokMSA_id:055260 AY132132 Neisseria meningitidis strain M8558 prokMSA_id:059590 AY132133 Neisseria meningitidis strain M8577 prokMSA_id:059588 AY132134 Neisseria meningitidis strain M8556 prokMSA_id:059589 AY132135 Neisseria meningitidis strain M8555 prokMSA_id:059586 AY132136 Neisseria meningitidis strain M8579 prokMSA_id:059587 AY132137 Neisseria meningitidis strain M8590 prokMSA_id:059585 AY132138 Neisseria meningitidis strain M8597 prokMSA_id:059584 AY132139 Neisseria meningitidis strain M8596 prokMSA_id:059581 AY132140 Neisseria meningitidis strain M8595 prokMSA_id:059583 AY132141 Neisseria meningitidis strain M8587 prokMSA_id:059580 AY132142 Neisseria meningitidis strain M8586 prokMSA_id:059582 AY132143 Neisseria meningitidis strain M8585 prokMSA_id:059579 AY132144 Neisseria meningitidis strain M8598 prokMSA_id:059577 AY132145 Neisseria meningitidis strain M8578 prokMSA_id:059578 AY132146 Neisseria meningitidis strain M8592 prokMSA_id:055399 AY132147 Neisseria meningitidis strain M8591 prokMSA_id:059576 AY132148 Neisseria meningitidis strain M8584 prokMSA_id:072501 AY132149 Neisseria meningitidis strain M8588 prokMSA_id:059572 AY132150 Neisseria meningitidis strain M8589 prokMSA_id:056213 AY137379 Neisseria meningitidis strain N.731/91 prokMSA_id:072742 AY137380 Neisseria meningitidis strain N.1031/91 prokMSA_id:058880 AY137381 Neisseria meningitidis strain N.668/90 prokMSA_id:058878 AY137382 Neisseria meningitidis strain N.1003/90 prokMSA_id:058877 AY137383 Neisseria meningitidis strain N.561/94 prokMSA_id:058875 AY137384 Neisseria meningitidis strain N.419/91 prokMSA_id:059209 AY138854 Neisseria meningitidis strain N.461/01 prokMSA_id:069554 AY144449 Neisseria sp. 170702P2 prokMSA_id:076597 AY146969 Neisseria meningitidis strain N.1101/95 prokMSA_id:075870 AY146970 Neisseria meningitidis strain N.381/92 prokMSA_id:076018 AY146971 Neisseria meningitidis strain N.195/91 prokMSA_id:076096 AY146972 Neisseria meningitidis strain N.1080/94 prokMSA_id:076241 AY146973 Neisseria meningitidis strain N.374/96 prokMSA_id:077133 AY146974 Neisseria meningitidis strain N.188/91 prokMSA_id:076992 AY146975 Neisseria meningitidis strain N.221/91 prokMSA_id:076052 AY146976 Neisseria meningitidis strain N.394/99 prokMSA_id:075010 AY146977 Neisseria meningitidis strain N.1043/01 prokMSA_id:077115 AY146978 Neisseria meningitidis strain N.451/91 prokMSA_id:075573 AY150570 Neisseria meningitidis strain N.02/01 prokMSA_id:077012 AY150571 Neisseria meningitidis strain N.539/95 prokMSA_id:074919 AY150572 Neisseria meningitidis strain N.113/00 prokMSA_id:074921 AY150573 Neisseria meningitidis strain N.995/01 prokMSA_id:076592 AY150574 Neisseria meningitidis strain N.483/00 prokMSA_id:076906 AY167422 Neisseria elongata subsp. glycolytica prokMSA_id:078528 AY176646 Neisseria meningitidis strain N.1180/95 prokMSA_id:080561 AY187940 Neisseria meningitidis prokMSA_id:097629 AY225604 beta clone AT-s71 prokMSA_id:084794 AY238896 Neisseria meningitidis strain N.297/99 prokMSA_id:082972 AY238897 Neisseria meningitidis strain N.479/00 prokMSA_id:085006 AY238898 Neisseria meningitidis strain N.490/96 prokMSA_id:085938 AY238899 Neisseria meningitidis strain N.268/97 prokMSA_id:082518 AY238900 Neisseria meningitidis strain N.565/98 prokMSA_id:083174 AY238901 Neisseria meningitidis strain N.01/94 prokMSA_id:083177 AY238902 Neisseria meningitidis strain N.840/93 prokMSA_id:086528 AY238903 Neisseria meningitidis strain N.1048/95 prokMSA_id:084292 AY238904 Neisseria meningitidis strain N.591/91 prokMSA_id:084517 AY238905 Neisseria meningitidis strain N.913/99 prokMSA_id:084437 AY238906 Neisseria meningitidis strain N.1118/90 prokMSA_id:086312 AY238907 Neisseria meningitidis strain N.619/92 prokMSA_id:084805 AY238908 Neisseria meningitidis strain N.750/90 prokMSA_id:083551 AY238909 Neisseria meningitidis strain N.284/91 prokMSA_id:082838 AY238910 Neisseria meningitidis strain N.49/91 prokMSA_id:082542 AY238911 Neisseria meningitidis strain N.74/91 prokMSA_id:082854 AY238912 Neisseria meningitidis strain N.80/91 prokMSA_id:084990 AY238913 Neisseria meningitidis strain N.901/91 prokMSA_id:085608 AY238914 Neisseria meningitidis strain N.276/92 prokMSA_id:082684 AY238915 Neisseria meningitidis strain N.485/93 prokMSA_id:085212 AY238916 Neisseria meningitidis strain N.664/94 prokMSA_id:085130 AY238917 Neisseria meningitidis strain N.669/94 prokMSA_id:082822 AY238918 Neisseria meningitidis strain N.964/94 prokMSA_id:082852 AY238919 Neisseria meningitidis strain N.656/95 prokMSA_id:085790 AY238920 Neisseria meningitidis strain N.222/95 prokMSA_id:086079 AY238921 Neisseria meningitidis strain N.716/95 prokMSA_id:084315 AY238922 Neisseria meningitidis strain N.1437/95 prokMSA_id:082813 AY238923 Neisseria meningitidis strain N.604/96 prokMSA_id:084215 AY238924 Neisseria meningitidis strain N.831/97 prokMSA_id:083769 AY238925 Neisseria meningitidis strain N.393/97 prokMSA_id:085610 AY238926 Neisseria meningitidis strain N.158/98 prokMSA_id:083728 AY238927 Neisseria meningitidis strain N.1019/97 prokMSA_id:082481 AY238928 Neisseria meningitidis strain N.1117/94 prokMSA_id:084067 AY238929 Neisseria meningitidis strain N.1039/95 prokMSA_id:082964 AY238930 Neisseria meningitidis strain N.578/97 prokMSA_id:083998 AY238931 Neisseria meningitidis strain N.541/97 prokMSA_id:085108 AY238932 Neisseria meningitidis strain N.934/01 prokMSA_id:084678 AY238933 Neisseria meningitidis strain N.689/01 prokMSA_id:083043 AY238934 Neisseria meningitidis strain N.496/96 prokMSA_id:087506 AY286546 Eikenella sp. MDA2346-4 prokMSA_id:089069 AY307993 clone UB274 prokMSA_id:090176 AY325740 Neisseria sp. isolate PCR amplicon RL 1532 prokMSA_id:088757 AY325742 Neisseria sp. isolate PCR amplicon RL 1577 prokMSA_id:088791 AY325743 Neisseria sp. isolate PCR amplicon RL 1682 prokMSA_id:089829 AY325744 Neisseria sp. isolate PCR amplicon RL 1713 prokMSA_id:089217 AY325746 Neisseria sp. isolate PCR amplicon RL 1826 prokMSA_id:090250 AY325750 Neisseria sp. isolate PCR amplicon RL 1898 prokMSA_id:090305 AY325751 Neisseria sp. isolate PCR amplicon RL 1908 prokMSA_id:088169 AY325752 Neisseria sp. isolate PCR amplicon RL 1936b prokMSA_id:090760 AY325761 Neisseria sp. isolate PCR amplicon RL 2264 prokMSA_id:088714 AY325762 Neisseria sp. isolate PCR amplicon RL 2302 prokMSA_id:091728 AY332615 Neisseria sp. PCR amplicon RL 2471 prokMSA_id:092425 AY341823 Neisseria genomosp. P1 clone P4PC_20 prokMSA_id:092167 AY349381 Kingella sp. oral clone ID059 prokMSA_id:092360 AY360345 Neisseria meningitidis prokMSA_id:092325 AY360352 Neisseria cinerea prokMSA_id:006388 L06165 Eikenella sp. str. UB-204 CCUG 28283. prokMSA_id:006473 L06166 Kingella denitrificans str. UB-294 CCUG 28284. prokMSA_id:006432 L06167 Neisseria polysaccharea ATCC 43768 . prokMSA_id:006424 L06168 Neisseria flavescens str. N155 ATCC 13120 . prokMSA_id:006418 L06169 Neisseria macacae str. M-740 ATCC 33926 . prokMSA_id:006402 L06171 Neisseria elongata ATCC 25295 . prokMSA_id:006415 L06172 Neisseria animalis str. NA1 ATCC 19573. prokMSA_id:006385 L06173 Neisseria denitrificans str. M37 ATCC 14686 . prokMSA_id:006396 L10738 Neisseria weaveri CDC 8142. prokMSA_id:006477 M22512 Eikenella corrodens ATCC 23834 . prokMSA_id:006386 M22513 Eikenella corrodens FDC 373. prokMSA_id:006382 M22514 Eikenella corrodens FDC 558. prokMSA_id:006393 M22515 Eikenella corrodens FDC 1073. prokMSA_id:006387 M22516 Kingella denitrificans ATCC 33394 . prokMSA_id:006411 M34130 Neisseria gonorrhoeae str. 2013. prokMSA_id:006478 M35020 Neisseria denitrificans str. M37 ATCC 14686 . prokMSA_id:006410 M59071 Simonsiella muelleri ATCC 29453 . prokMSA_id:046303 NC_003112 Neisseria meningitidis serogroup B strain MC58 complete genome prokMSA_id:045310 NC_003116 Neisseria meningitidis serogroup A strain Z2491 complete genome prokMSA_id:006456 NONE Neisseria elongata. prokMSA_id:006413 U02899 Neisseria cinerea CDC 10050. prokMSA_id:006476 U02900 Neisseria gonorrhoeae subsp. kochii NRL 32895. prokMSA_id:006412 U02901 Neisseria meningitidis str. serotype A ATCC 13077 . prokMSA_id:006414 U02902 Neisseria polysaccharea ATCC 43768 . prokMSA_id:006475 U02903 Neisseria sicca. prokMSA_id:006457 X07714 Neisseria gonorrhoeae str. B 5025 NCTC 8375 . prokMSA_id:006392 X74893 Neisseria pharyngis NCTC 4590. prokMSA_id:006384 X74900 Neisseria meningitidis str. serotype A NCTC 10025 . prokMSA_id:006417 X74901 Neisseria lactamica NCTC 10617 . prokMSA_id:006383 Z22776 Neisseria meningitidis str. 418. 2.28.2.2 STR.SBR2062_SUBGROUP 3 seqs 2.28.2.2.999 poor quality 3 seqs prokMSA_id:036688 AF141551 beta clone CRE-PA84 prokMSA_id:006479 X84524 str. SBR1096. prokMSA_id:006480 X84596 str. SBR2062. 2.28.2.3 METHYLOPHILUS_GROUP 86 seqs 2.28.2.3.001 OTU 1 seq prokMSA_id:006487 AB022337 str. POCPN-5. 2.28.2.3.002 OTU 1 seq prokMSA_id:006486 U76100 Methylophilus arc33. 2.28.2.3.004 OTU 2 seqs prokMSA_id:006483 AF159665 clone HstpL60. prokMSA_id:006484 AF159666 clone HstpL77. 2.28.2.3.005 OTU 1 seq prokMSA_id:017116 AJ318113 beta clone BIci31 2.28.2.3.006 OTU 1 seq prokMSA_id:024165 AJ318162 beta clone BIqi38 2.28.2.3.008 OTU 8 seqs prokMSA_id:048715 AJ400339 marine ZD0202 prokMSA_id:029664 AJ400352 marine ZD0412 prokMSA_id:062468 AY102012 Beta HTCC144 prokMSA_id:062469 AY102013 Beta HTCC165 prokMSA_id:062467 AY102015 Beta HTCC174 prokMSA_id:062466 AY102016 Beta HTCC185 prokMSA_id:093108 AY354843 beta clone PLY-P2-82 prokMSA_id:006485 U70704 clone OM43. 2.28.2.3.009 OTU 1 seq prokMSA_id:031535 AF389437 clone SRS62DBA05 2.28.2.3.010 OTU 1 seq prokMSA_id:035310 AF388887 beta clone GOBB3-CL138 2.28.2.3.011 OTU 1 seq prokMSA_id:037301 AB027139 Methylobacillus sp. 12S 2.28.2.3.012 OTU 1 seq prokMSA_id:040655 AF188168 beta KEppi37 2.28.2.3.013 OTU 1 seq prokMSA_id:042693 AY027801 Aminomonas aminovorus C2A1 2.28.2.3.014 OTU 1 seq prokMSA_id:050624 AJ318156 beta clone BIki2 2.28.2.3.015 OTU 1 seq prokMSA_id:062470 AY102014 Beta HTCC168 2.28.2.3.016 OTU 2 seqs prokMSA_id:071394 AJ517772 Methylophilus freyburgensis strain I 42T prokMSA_id:092628 AY360349 Methylophilus sp. 040703/8067S 2.28.2.3.017 OTU 1 seq prokMSA_id:074566 AF388885 beta clone GOBB3-CL330 2.28.2.3.018 OTU 1 seq prokMSA_id:075025 AJ534622 beta clone JG36-TzT-50 2.28.2.3.019 OTU 1 seq prokMSA_id:081763 AY187524 clone SD84 2.28.2.3.020 OTU 1 seq prokMSA_id:084523 AY274146 clone D141 2.28.2.3.021 OTU 1 seq prokMSA_id:093726 AJ582186 beta- clone Gitt-GS-59 2.28.2.3.999 poor quality 58 seqs prokMSA_id:026282 AB041309 ECS39 prokMSA_id:075818 AB075158 clone:TCR9 prokMSA_id:085387 AB107094 beta clone:a8w-1 prokMSA_id:083365 AB107859 beta clone:l prokMSA_id:033061 AF055238 marine pC2-2 5' prokMSA_id:020219 AF114662 beta DCM-FREE-33 prokMSA_id:071174 AF250333 Methylophilus leisingerii prokMSA_id:019262 AF287030 beta EC-I19 prokMSA_id:050660 AF287031 beta EC-I6 prokMSA_id:037503 AF289867 beta Kmlps0-1 prokMSA_id:027303 AF289869 beta Kmlps0-4 prokMSA_id:039255 AF289875 beta Kmlps0-23 prokMSA_id:024567 AF289890 beta Kmlps3-15 prokMSA_id:032420 AF289892 beta Kmlps3-20 prokMSA_id:032954 AF289894 beta Kmlps3-24 prokMSA_id:028708 AF353285 Tui1-8 prokMSA_id:030079 AF392645 clone LEF6 prokMSA_id:026540 AF428579 clone CRD99-01 prokMSA_id:070615 AF466894 beta isolate DGGE band C38.1 prokMSA_id:069542 AF466922 beta isolate DGGE band C43 prokMSA_id:068568 AF486710 clone E5-46-HS3I-229 prokMSA_id:068526 AF486758 clone E5-46-HS3I-278 prokMSA_id:067308 AF494500 beta clone GOBB3-B10-5-2 prokMSA_id:067307 AF494501 Methylophilus sp. clone GOBB3-B07-10-3 prokMSA_id:067303 AF494507 Methylophilus sp. clone GOBB3-B10-1-4 prokMSA_id:066430 AF497886 beta isolate WL8-23 prokMSA_id:058254 AF544648 beta DGGE gel band H7-5 prokMSA_id:058056 AF547410 beta clone CL-S77-297 prokMSA_id:058042 AF547426 beta clone CL-S77-314 prokMSA_id:058044 AF547429 epsilon clone CL-S77-317 prokMSA_id:031529 AJ132053 beta Band07965 prokMSA_id:049140 AJ132054 beta Band07967 prokMSA_id:040664 AJ132055 beta Band07966 prokMSA_id:019025 AJ231053 beta clone 8 prokMSA_id:045536 AJ245760 beta DGGE bandBpro prokMSA_id:063153 AJ316216 beta DGGE Band 84 prokMSA_id:062575 AJ504549 isolate P1CN95 prokMSA_id:056858 AJ518746 clone Sai4P3-77 prokMSA_id:071030 AY145604 beta clone DC8-80-6 prokMSA_id:055262 AY145613 beta clone DC11-0-17 prokMSA_id:069087 AY145619 beta clone DC11-51-7 prokMSA_id:071105 AY145626 beta clone DC11-80-3 prokMSA_id:080308 AY192322 beta clone S3-2A prokMSA_id:089385 AY274184 beta SSCP band S15 prokMSA_id:089981 AY274185 beta DGGE band D1 prokMSA_id:088160 AY274190 beta DGGE band D6 prokMSA_id:088207 AY298905 Methylobacillus pratensis strain F31 prokMSA_id:092682 AY354842 beta clone PLY-P2-77 prokMSA_id:006482 L15475 Methylophilus methylotrophus str. AS1 ATCC 53528 . prokMSA_id:006488 M29021 Methylophilus methylotrophus str. AS1 ATCC 53528 . prokMSA_id:006490 M95651 Methylobacillus flagellatum str. KT1. prokMSA_id:006492 M95652 Methylobacillus glycogenes str. T-11 ATCC 29475 . prokMSA_id:006491 M95660 Methylobacillus "methylovora" str. M12-4 ATCC 21852 . prokMSA_id:006493 M95661 Methylobacillus "methylovora" str. M12-4 ATCC 21852 . prokMSA_id:022485 U70705 beta OM58 prokMSA_id:072431 U85121 beta clone ACK-M50 prokMSA_id:006489 X91178 clone G7. prokMSA_id:006481 Z69316 str. s12. 2.28.2.4 NITROSOMONAS_GROUP 1170 seqs 2.28.2.4.1 GALLIONELLA_ASSEMBLAGE 25 seqs 2.28.2.4.1.001 OTU 1 seq prokMSA_id:006494 L07897 Gallionella ferruginea str. stock Johan. 2.28.2.4.1.002 OTU 1 seq prokMSA_id:021368 AY050584 clone GOUTA12 2.28.2.4.1.003 OTU 1 seq prokMSA_id:032326 AY013694 Banisveld landfill BVC68 2.28.2.4.1.004 OTU 1 seq prokMSA_id:042997 AY013698 Banisveld landfill BVC12 2.28.2.4.1.005 OTU 1 seq prokMSA_id:044854 AY013697 Banisveld landfill BVC40 2.28.2.4.1.006 OTU 1 seq prokMSA_id:053885 AY050601 clone GOUTB18 2.28.2.4.1.007 OTU 1 seq prokMSA_id:094561 AJ583176 beta- clone S15B-MN57 2.28.2.4.1.999 poor quality 18 seqs prokMSA_id:049236 AF141482 beta clone CRE-FL68 prokMSA_id:038596 AF175631 WJGRT-102 prokMSA_id:036838 AF353290 Tui2-9 prokMSA_id:075972 AF431268 beta clone C32.25SM prokMSA_id:018255 AJ231051 beta clone 6 prokMSA_id:047417 AJ231052 beta clone 7 prokMSA_id:048393 AJ231055 beta clone 10 prokMSA_id:048955 AJ422153 beta clone Spb06 prokMSA_id:056930 AJ518658 clone Sai2P2-34 prokMSA_id:080262 AY192318 beta clone S1a-9C prokMSA_id:080193 AY193041 clone GalB33 prokMSA_id:006501 D26204 soil from paddy field clone PAD17. prokMSA_id:006500 D63618 clone UN45. prokMSA_id:006499 X91425 clone A2g. prokMSA_id:006496 X91426 AEspoe hard rock 10-626m below ground surface clone A3g. prokMSA_id:006498 X91427 clone A4o. prokMSA_id:006495 X91465 clone A42L. prokMSA_id:006497 X91611 clone G17. 2.28.2.4.2 ENVIRONMENTAL_CLONE_G34 1 seq 2.28.2.4.2.999 poor quality 1 seq prokMSA_id:006502 X91286 Bangombe boreholes at depth of 5-105m clone G34. 2.28.2.4.3 NSS.MULTIFORMIS_SUBGROUP 891 seqs 2.28.2.4.3.001 OTU 1 seq prokMSA_id:006631 AJ003780 clone Dr17. 2.28.2.4.3.006 OTU 14 seqs prokMSA_id:006607 AJ003749 clone Gm8. prokMSA_id:006621 AJ003750 clone Gm2. prokMSA_id:006622 AJ003751 clone Gm3. prokMSA_id:006623 AJ003752 clone Gm9. prokMSA_id:006625 AJ003756 clone Vm4. prokMSA_id:006626 AJ003757 clone Vm5. prokMSA_id:006514 AJ003758 clone Vm6. prokMSA_id:006627 AJ003759 clone Vm7. prokMSA_id:006598 AJ003761 clone Vm11. prokMSA_id:006628 AJ003762 clone Vm12. prokMSA_id:006556 AJ003764 clone Rw9. prokMSA_id:006629 AJ003765 clone Rw14. prokMSA_id:006630 AJ003773 clone Ws11. prokMSA_id:048837 AY048945 DW_NsoB8-1-9 2.28.2.4.3.008 OTU 6 seqs prokMSA_id:006611 U62870 clone DT-2.3. prokMSA_id:006612 U62871 clone DT-3.2. prokMSA_id:006613 U62872 clone DT-3.6. prokMSA_id:006614 U62873 clone DT-4.5. prokMSA_id:006615 U62874 clone DT-4.10. prokMSA_id:006609 Z69165 str. soil sample A from pH 4.2 soil plot. 2.28.2.4.3.009 OTU 1 seq prokMSA_id:006603 Y10128 Nitrosospira sp. str. Np22-21. 2.28.2.4.3.014 OTU 6 seqs prokMSA_id:060798 AF491657 beta clone SFD1-14 prokMSA_id:060792 AF491665 beta clone SFD1-25 prokMSA_id:060786 AF491669 beta clone SFD1-36 prokMSA_id:091174 AY345583 clone GLSR-10 prokMSA_id:006524 U85120 clone ACK-C30. prokMSA_id:006587 Z99999 str. LD28. 2.28.2.4.3.018 OTU 1 seq prokMSA_id:006553 U62884 clone DT-1.9. 2.28.2.4.3.019 OTU 2 seqs prokMSA_id:006551 AF047644 clone TRA3-20. prokMSA_id:016969 AF353297 Tui3-12 2.28.2.4.3.020 OTU 1 seq prokMSA_id:006542 Z69151 str. soil sample A from pH 4.2 soil plot. 2.28.2.4.3.021 OTU 2 seqs prokMSA_id:006540 AB000700 Nitrosomonas sp. str. JL21. prokMSA_id:074628 AY123811 Nitrosomonas sp. Nm59 2.28.2.4.3.023 OTU 1 seq prokMSA_id:006536 AF006507 clone ps.clone 6. 2.28.2.4.3.026 OTU 2 seqs prokMSA_id:006533 AF072922 clone S28. prokMSA_id:006534 AF072927 clone A1-13. 2.28.2.4.3.027 OTU 1 seq prokMSA_id:006532 AJ003777 clone Ws26. 2.28.2.4.3.028 OTU 1 seq prokMSA_id:006531 AJ003776 clone Ws25. 2.28.2.4.3.029 OTU 3 seqs prokMSA_id:006530 AJ003775 clone Ws23. prokMSA_id:077766 AY186207 clone HL1 prokMSA_id:077722 AY186226 clone AZP2-14 2.28.2.4.3.030 OTU 8 seqs prokMSA_id:021058 AF203512 beta clone SCICEX 95A-2 prokMSA_id:045889 AF203513 beta clone SCICEX 95A-4 prokMSA_id:051099 AF203519 beta clone SCICEX 95B-17 prokMSA_id:016492 AF216675 beta SCICEX 96A-21 prokMSA_id:078201 AY186219 clone HP12 prokMSA_id:006528 U62885 clone DT-1.7. prokMSA_id:006520 Z69091 str. marine sediment sample A1 from beneath salmon fish cage. prokMSA_id:006521 Z69097 str. marine sediment sample A2 from beneath salmon fish cage. 2.28.2.4.3.036 OTU 11 seqs prokMSA_id:017369 AY048937 DW_NsoE9-1 prokMSA_id:027878 AY048938 DW_NsoE9-2 prokMSA_id:030264 AY048939 DW_NsoE9-3 prokMSA_id:049273 AY048940 DW_NsoE9-4 prokMSA_id:045189 AY048941 DW_NsoE9-6 prokMSA_id:043215 AY048942 DW_NsoE9-8 prokMSA_id:019683 AY048943 DW_NsoE9-9 prokMSA_id:031619 AY048944 DW_NsoB8-1-7 prokMSA_id:020591 AY048946 DW_NsoB8-2-1 prokMSA_id:038111 AY048947 DW_NsoB8-2-6 prokMSA_id:033169 AY048948 DW_NsoB8-2-10 2.28.2.4.3.037 OTU 2 seqs prokMSA_id:047151 AF289159 beta clone PRD01a011B prokMSA_id:070311 AF289172 beta clone PRD01b012B 2.28.2.4.3.038 OTU 1 seq prokMSA_id:017997 AJ297419 beta GaN50324 2.28.2.4.3.039 OTU 1 seq prokMSA_id:018485 AJ422169 beta clone Spb253 2.28.2.4.3.040 OTU 1 seq prokMSA_id:019241 AY037751 earthworm cast clone C149 2.28.2.4.3.041 OTU 1 seq prokMSA_id:019603 AF204250 beta SBR1021 2.28.2.4.3.043 OTU 36 seqs prokMSA_id:042005 AF210050 beta HB0-2 prokMSA_id:019636 AF272422 Nitrosomonas oligotropha prokMSA_id:062863 AF454638 Nso_MWD7-2 prokMSA_id:062861 AF454639 Nso_MWD7-7 prokMSA_id:062862 AF454640 Nso_MWD7-9 prokMSA_id:062860 AF454641 Nso_R1-1 prokMSA_id:062858 AF454643 Nso_LWCP-2 prokMSA_id:062857 AF454644 Nso_LWCP-3 prokMSA_id:062856 AF454645 Nso_LWCP-5 prokMSA_id:062855 AF454646 Nso_LWCP-6 prokMSA_id:062853 AF454647 Nso_LWCP-7 prokMSA_id:055714 AF454648 Nso_LWCP-8 prokMSA_id:062852 AF454650 Nso_WWW-4 prokMSA_id:053680 AJ298736 Nitrosomonas oligotropha isolate Nm45 prokMSA_id:052601 AY048920 DW_NsoC7-3 prokMSA_id:035656 AY048921 DW_NsoC7-5 prokMSA_id:039648 AY048922 DW_NsoC7-6 prokMSA_id:029749 AY048923 DW_NsoC7-8 prokMSA_id:031191 AY048925 DW_NsoC8-7 prokMSA_id:022007 AY048928 DW_NsoE7-1 prokMSA_id:028938 AY048929 DW_NsoE7-2 prokMSA_id:028590 AY048930 DW_NsoE7-4 prokMSA_id:032624 AY048931 DW_NsoE7-5 prokMSA_id:016653 AY048932 DW_NsoE7-7 prokMSA_id:037210 AY048933 DW_NsoE8-1 prokMSA_id:046342 AY048934 DW_NsoE8-2 prokMSA_id:043352 AY048935 DW_NsoE8-4 prokMSA_id:058785 AY138525 Nitrosomonas sp. clone DNB_Y27 prokMSA_id:058784 AY138526 Nitrosomonas sp. clone DNB_Y28 prokMSA_id:058781 AY138528 Nitrosomonas sp. clone DNB_Y37 prokMSA_id:058775 AY138529 Nitrosomonas sp. clone DNB_Y39 prokMSA_id:058779 AY138530 Nitrosomonas sp. clone DNB_Y40 prokMSA_id:058777 AY138532 Nitrosomonas sp. clone DNB_Y1 prokMSA_id:058776 AY138533 Nitrosomonas sp. clone DNB_Y2 prokMSA_id:055314 AY138535 Nitrosomonas sp. clone DNB_Y19 prokMSA_id:058773 AY138536 Nitrosomonas sp. clone DNB_Y20 2.28.2.4.3.044 OTU 1 seq prokMSA_id:019644 AF407390 clone Ra9C4 2.28.2.4.3.045 OTU 4 seqs prokMSA_id:020978 AF338202 Marine C-17 prokMSA_id:072137 AF338208 Marine TT140-89A prokMSA_id:032578 AF338209 Marine TT140-098-2 prokMSA_id:069852 AY123794 Nitrosomonas sp. Nm143 2.28.2.4.3.046 OTU 2 seqs prokMSA_id:021767 AF337863 gold mine D42 prokMSA_id:083988 AY274141 clone D135 2.28.2.4.3.047 OTU 1 seq prokMSA_id:023416 AJ252648 Agricultural soil clone SC-I-66 2.28.2.4.3.048 OTU 1 seq prokMSA_id:056280 AY129806 Nitrosospira sp. clone GCPF38 2.28.2.4.3.049 OTU 2 seqs prokMSA_id:023587 AF296195 SY6-23 prokMSA_id:044238 AF296203 SY6-54 2.28.2.4.3.050 OTU 2 seqs prokMSA_id:024923 AF338204 Estuarine B19-i-NH4 prokMSA_id:078040 AY186223 clone AZP2-9 2.28.2.4.3.051 OTU 1 seq prokMSA_id:027004 AF407387 clone RB7C10 2.28.2.4.3.052 OTU 1 seq prokMSA_id:028345 AJ231056 beta clone 11 2.28.2.4.3.053 OTU 1 seq prokMSA_id:028664 AF388908 Methylophilus sp. clone GOBB3-CL121 2.28.2.4.3.054 OTU 1 seq prokMSA_id:028735 AF469364 clone 33-PA45B98 2.28.2.4.3.055 OTU 1 seq prokMSA_id:029182 AY048924 DW_NsoC7-10 2.28.2.4.3.056 OTU 1 seq prokMSA_id:029614 AF417875 antarctic soil clone bh1.36 2.28.2.4.3.058 OTU 6 seqs prokMSA_id:006539 AB000699 Nitrosomonas sp. str. AL212. prokMSA_id:049602 AF272414 Nitrosomonas ureae prokMSA_id:029175 AJ298730 Nitrosomonas ureae isolate Nm10 prokMSA_id:038696 AY048926 DW_NsoC9-4 prokMSA_id:029683 AY048927 DW_NsoC9-6 prokMSA_id:077593 AY186220 clone AZP2-2 2.28.2.4.3.059 OTU 1 seq prokMSA_id:030012 AF448464 Methylophilus sp. clone GOBB3-CL275 2.28.2.4.3.060 OTU 2 seqs prokMSA_id:031636 AF320956 Lake Michigan sediment LMBA39 prokMSA_id:035492 AH010352 Lake Michigan sediment LMBA39 and genes 2.28.2.4.3.061 OTU 5 seqs prokMSA_id:044098 AF448460 Methylophilus sp. clone GOBB3-CL264 prokMSA_id:049851 AF448461 Methylophilus sp. clone GOBB3-CL130 prokMSA_id:032641 AF448463 Methylophilus sp. clone GOBB3-CL123 prokMSA_id:039426 AF448465 Methylophilus sp. clone GOBB3-CL233 prokMSA_id:075349 AY154553 earthworm intestine clone lw57 2.28.2.4.3.062 OTU 1 seq prokMSA_id:033299 AF414583 clone P3OB-57 2.28.2.4.3.063 OTU 2 seqs prokMSA_id:033424 AF337868 gold mine D14 prokMSA_id:033825 AF414581 clone P3OB-51 2.28.2.4.3.064 OTU 1 seq prokMSA_id:034857 AF448462 Methylophilus sp. clone GOBB3-CL297 2.28.2.4.3.066 OTU 1 seq prokMSA_id:074365 AY123810 Nitrosomonas sp. Nm47 2.28.2.4.3.067 OTU 1 seq prokMSA_id:036578 AY013692 Banisveld landfill BVC77 2.28.2.4.3.068 OTU 1 seq prokMSA_id:036586 Z93990 2.28.2.4.3.069 OTU 2 seqs prokMSA_id:038503 AF272421 Nitrosomonas sp. NM 41 prokMSA_id:073796 AY123799 Nitrosomonas sp. Nm58 2.28.2.4.3.070 OTU 1 seq prokMSA_id:038857 AF424054 Nitrosospira sp. MERTZ_2CM_3 2.28.2.4.3.071 OTU 1 seq prokMSA_id:040900 AF363291 Nitrosovibrio sp. RY6A 2.28.2.4.3.072 OTU 1 seq prokMSA_id:043046 AF204242 beta GC152 2.28.2.4.3.073 OTU 1 seq prokMSA_id:043839 AF363290 Nitrosovibrio sp. RY3C 2.28.2.4.3.074 OTU 1 seq prokMSA_id:049524 AF272423 Nitrosomonas cryotolerans 2.28.2.4.3.075 OTU 1 seq prokMSA_id:055580 AJ441268 ammonia-oxidizing isolate F32 2.28.2.4.3.076 OTU 1 seq prokMSA_id:055558 AF507758 soil clone S1144 2.28.2.4.3.077 OTU 1 seq prokMSA_id:060870 AY135903 clone SG2-33 2.28.2.4.3.078 OTU 1 seq prokMSA_id:062854 AF454649 Nso_WWW-1 2.28.2.4.3.079 OTU 1 seq prokMSA_id:062859 AF454642 Nso_LWCP-1 2.28.2.4.3.080 OTU 5 seqs prokMSA_id:062865 AF454636 Nso_MWD3-2 prokMSA_id:062864 AF454637 Nso_MWD3-6 prokMSA_id:074278 AY123798 Nitrosomonas sp. Nm80 prokMSA_id:077882 AY186216 clone AZP15 prokMSA_id:077741 AY186224 clone AZP2-10 2.28.2.4.3.081 OTU 1 seq prokMSA_id:063563 AB069809 clone:CS8.31 2.28.2.4.3.082 OTU 2 seqs prokMSA_id:063761 AY114346 ammonia-oxidizing clone LD1-B37 prokMSA_id:063758 AY114347 ammonia-oxidizing clone LD1-B6 2.28.2.4.3.083 OTU 1 seq prokMSA_id:064610 AF467358 beta clone 1605 2.28.2.4.3.084 OTU 1 seq prokMSA_id:065640 AF507754 soil clone S1121 2.28.2.4.3.085 OTU 1 seq prokMSA_id:065813 AF507519 soil clone S0159 2.28.2.4.3.086 OTU 1 seq prokMSA_id:067242 AF495444 clone F13.6 2.28.2.4.3.087 OTU 1 seq prokMSA_id:067252 AF495436 clone F13.40 2.28.2.4.3.088 OTU 1 seq prokMSA_id:069916 AY123797 Nitrosomonas sp. Nm84 2.28.2.4.3.090 OTU 3 seqs prokMSA_id:070935 AJ003760 beta clone Vm10 prokMSA_id:006555 AJ003763 clone Rw5. prokMSA_id:072906 AJ003774 beta clone Ws12 2.28.2.4.3.091 OTU 1 seq prokMSA_id:072968 AJ297417 beta GaN5a 2.28.2.4.3.092 OTU 1 seq prokMSA_id:073052 AY145571 Beta BP-5 2.28.2.4.3.093 OTU 180 seqs prokMSA_id:075979 AB070984 Nitrosospira multiformis prokMSA_id:006559 AF063633 clone 400 AGG D3. prokMSA_id:006560 AF063636 clone 400 FREE Z14. prokMSA_id:006535 AF080256 Nitrosovibrio TYM9 str. TYM9. prokMSA_id:020597 AF142411 SCICEX 96B prokMSA_id:022159 AF142412 Palmer Stn B/3m prokMSA_id:045633 AF203511 beta clone SCICEX 95A-44 prokMSA_id:038635 AF203514 beta clone SCICEX 95B-22 prokMSA_id:032577 AF203515 beta clone SCICEX 95B-10 prokMSA_id:026025 AF203516 beta clone SCICEX 95B-4 prokMSA_id:018009 AF203517 beta clone SCICEX 95B-3 prokMSA_id:020422 AF203518 beta clone SCICEX 95B-7 prokMSA_id:028595 AF203520 beta clone SCICEX 96A-11 prokMSA_id:047570 AF203521 beta clone SCICEX 96A-4 prokMSA_id:029127 AF203522 beta clone SCICEX 96A-19 prokMSA_id:051826 AF203523 beta clone SCICEX 96A-8 prokMSA_id:016402 AF203524 beta clone Palmer A-2 prokMSA_id:020354 AF203525 beta clone Palmer A-8 prokMSA_id:030640 AF203526 beta clone Palmer A-13 prokMSA_id:035144 AF230659 beta SCICEX 96A-17 prokMSA_id:016369 AF230660 beta SCICEX 96B-3 prokMSA_id:020624 AF353156 Nitrosospira sp. TCH716 prokMSA_id:044054 AF353157 Nitrosovibrio sp. E12 prokMSA_id:043237 AF353158 Nitrosospira sp. NRS527 prokMSA_id:022689 AF353162 Nitrosospira sp. GS833 prokMSA_id:019086 AF353163 Nitrosospira sp. PJA1 prokMSA_id:052631 AF386754 Nitrosospira sp. BF16c46 prokMSA_id:022110 AF386755 Nitrosospira sp. R5c20 prokMSA_id:017651 AF386756 Nitrosospira sp. R3c5 prokMSA_id:071765 AF408634 Nitrosospira multiformis strain 24C prokMSA_id:006565 AJ000344 Nitrosospira sp. str. III2. prokMSA_id:006606 AJ000345 Nitrosospira sp. str. III7. prokMSA_id:006515 AJ003778 clone Dr5. prokMSA_id:006557 AJ003779 clone Dr13. prokMSA_id:006558 AJ003782 clone Dr19. prokMSA_id:006505 AJ005543 Nitrosospira sp. str. A4. prokMSA_id:006506 AJ005544 Nitrosospira sp. str. A16. prokMSA_id:006518 AJ005545 Nitrosospira sp. str. F3. prokMSA_id:006547 AJ012105 Nitrosospira sp. str. Ka3. prokMSA_id:006548 AJ012106 Nitrosospira sp. str. Ka4. prokMSA_id:006549 AJ012107 Nitrosospira sp. str. O4. prokMSA_id:006550 AJ012108 Nitrosospira sp. str. O13. prokMSA_id:030126 AJ272548 beta WSS6 prokMSA_id:052842 AJ272549 beta WSS1 prokMSA_id:045439 AJ272554 beta CSP7 prokMSA_id:048155 AJ272558 beta CSP11 prokMSA_id:050291 AJ275872 Nitrosospira SM-13 prokMSA_id:037667 AJ275873 Nitrosospira SM-29 prokMSA_id:054817 AJ275874 Nitrosospira SM-46 prokMSA_id:021168 AJ275876 Nitrosospira SM-43 prokMSA_id:027972 AJ275877 Nitrosospira SM-56 prokMSA_id:039038 AJ275878 Nitrosospira SM-112 prokMSA_id:044135 AJ275880 Nitrosospira SM-126 prokMSA_id:042908 AJ275881 Nitrosospira SM-41 prokMSA_id:022557 AJ275882 Nitrosospira SM-42 prokMSA_id:019692 AJ275883 Nitrosospira SM-35 prokMSA_id:045096 AJ275884 Nitrosospira SM-33 prokMSA_id:037102 AJ275885 Nitrosospira RM2-18 prokMSA_id:041383 AJ275886 Nitrosospira SM-16 prokMSA_id:029791 AJ275887 Nitrosospira SM-57 prokMSA_id:034829 AJ298724 Nitrosospira sp. 24C isolate 24C prokMSA_id:023474 AJ298725 Nitrosospira sp. 39-19 isolate 39-19 prokMSA_id:025430 AJ298729 Nitrosospira sp. Nl20 isolate Nl20 prokMSA_id:047154 AJ298741 Nitrosospira briensis isolate Nsp10 prokMSA_id:042974 AJ298743 Nitrosospira sp. Nsp17 isolate Nsp17 prokMSA_id:031088 AJ298745 Nitrosospira sp. Nsp2 isolate Nsp2 prokMSA_id:029595 AJ298746 Nitrosospira tenuis isolate Nv1 prokMSA_id:069995 AJ298747 Nitrosospira sp. Nv6 isolate Nv6 prokMSA_id:074816 AY114337 Nitrospira sp. clone LD1-A1 prokMSA_id:063769 AY114338 Nitrospira sp. clone LD1-A14 prokMSA_id:063768 AY114339 Nitrospira sp. clone LD1-A2 prokMSA_id:063767 AY114340 Nitrospira sp. clone LD1-A20 prokMSA_id:063766 AY114341 Nitrospira sp. clone LD1-A3 prokMSA_id:063765 AY114342 Nitrospira sp. clone LD1-A40 prokMSA_id:063764 AY114343 Nitrospira sp. clone LD1-B10 prokMSA_id:063763 AY114344 Nitrospira sp. clone LD1-B20 prokMSA_id:063762 AY114345 Nitrospira sp. clone LD1-B28 prokMSA_id:063756 AY114348 Nitrospira sp. clone LD1-A10 prokMSA_id:056207 AY114349 Nitrospira sp. clone LD1-B9 prokMSA_id:071885 AY123787 Nitrosospira sp. Nsp40 prokMSA_id:073957 AY123788 Nitrosospira sp. Nsp41 prokMSA_id:072194 AY123789 Nitrosospira sp. Nsp58 prokMSA_id:069130 AY123790 Nitrosospira sp. Nsp62 prokMSA_id:074048 AY123791 Nitrosospira sp. Nsp57 prokMSA_id:069564 AY123793 Nitrosospira sp. Nsp5 prokMSA_id:072023 AY123796 Nitrosospira sp. L115 prokMSA_id:070700 AY123800 Nitrosospira briensis prokMSA_id:069071 AY123801 Nitrosospira sp. Nsp12 prokMSA_id:073871 AY123802 Nitrosospira sp. Nsp2 prokMSA_id:069463 AY123803 Nitrosovibrio tenuis prokMSA_id:072266 AY123804 Nitrosospira sp. Nsp17 prokMSA_id:073045 AY123805 Nitrosospira sp. Nv6 prokMSA_id:069065 AY123806 Nitrosospira sp. Ka3 prokMSA_id:070906 AY123807 Nitrosospira multiformis prokMSA_id:069429 AY123808 Nitrosospira sp. Nsp1 prokMSA_id:069164 AY123809 Nitrosospira sp. III7 prokMSA_id:069607 AY123812 Nitrosospira sp. Nl5 prokMSA_id:073969 AY123813 Nitrosospira sp. Nsp65 prokMSA_id:058787 AY138523 Nitrosospira sp. clone DNB_Y3 prokMSA_id:058786 AY138524 Nitrosospira sp. clone DNB_Y15 prokMSA_id:058778 AY138531 Nitrosospira sp. DNB_E1 prokMSA_id:058774 AY138534 Nitrosospira sp. clone DNB_Y17 prokMSA_id:077754 AY186209 clone HL4 prokMSA_id:081823 AY218727 clone KD5-114 prokMSA_id:082230 AY218730 clone KD5-124 prokMSA_id:081360 AY218755 clone KD6-18 prokMSA_id:087451 AY293074 Nitrosospira sp. clone SBMCPn6 prokMSA_id:087146 AY293075 Nitrosospira sp. clone SBMDWh6 prokMSA_id:087203 AY293077 Nitrosospira sp. clone SBMCPa6 prokMSA_id:087450 AY293078 Nitrosospira sp. clone SBMCPc6 prokMSA_id:087221 AY293079 Nitrosospira sp. clone SBMCPc2 prokMSA_id:087586 AY293080 Nitrosospira sp. clone SBMCPj9 prokMSA_id:087049 AY293081 Nitrosospira sp. clone SBMCPo7 prokMSA_id:086777 AY293082 Nitrosospira sp. clone SBMCPa12 prokMSA_id:087243 AY293083 Nitrosospira sp. clone SBMCPb4 prokMSA_id:086797 AY293084 Nitrosospira sp. clone SBMCPd3 prokMSA_id:086992 AY293085 Nitrosospira sp. clone SBMCPe11 prokMSA_id:087751 AY293087 Nitrosospira sp. clone SBMCPi10 prokMSA_id:086929 AY293088 Nitrosospira sp. clone SBMSPh6 prokMSA_id:087503 AY293089 Nitrosospira sp. clone SBMSPf4 prokMSA_id:087621 AY293090 Nitrosospira sp. clone SBMDWa11 prokMSA_id:087770 AY293091 Nitrosospira sp. clone SBMDWd3 prokMSA_id:087889 AY293092 Nitrosospira sp. clone SBMDWf6 prokMSA_id:087571 AY293093 Nitrosospira sp. clone SBMDWg10 prokMSA_id:087058 AY293094 Nitrosospira sp. clone SBMDWg6 prokMSA_id:087614 AY293095 Nitrosospira sp. clone SBMDWh9 prokMSA_id:086883 AY293096 Nitrosospira sp. clone SBMDWi2 prokMSA_id:087986 AY293097 Nitrosospira sp. clone SBMDWa1 prokMSA_id:087108 AY293098 Nitrosospira sp. clone SBMDWc3 prokMSA_id:087287 AY293099 Nitrosospira sp. clone SBMDWc5 prokMSA_id:087979 AY293100 Nitrosospira sp. clone SBMCPa5 prokMSA_id:087646 AY293101 Nitrosospira sp. clone SBMCPd8 prokMSA_id:088047 AY293102 Nitrosospira sp. clone SBMCPg1 prokMSA_id:088046 AY293103 Nitrosospira sp. clone SBMDWa10 prokMSA_id:087431 AY293104 Nitrosospira sp. clone SBMDWf3 prokMSA_id:087836 AY293105 Nitrosospira sp. clone SBMSPa11 prokMSA_id:087845 AY293106 Nitrosospira sp. clone SBMSPa2 prokMSA_id:087514 AY293107 Nitrosospira sp. clone SBMSPa4 prokMSA_id:087634 AY293108 Nitrosospira sp. clone SBMSPa6 prokMSA_id:087831 AY293109 Nitrosospira sp. clone SBMSPd3 prokMSA_id:087177 AY293110 Nitrosospira sp. clone SBMSPd7 prokMSA_id:087359 AY293113 Nitrosospira sp. clone SBMSPh11 prokMSA_id:087209 AY293114 Nitrosospira sp. clone SBMSPh4 prokMSA_id:006517 L35505 Nitrosospira briensis str. C-128. prokMSA_id:006596 L35509 Nitrosospira multiformis str. C-71 ATCC 25196 . prokMSA_id:006503 M96396 Nitrosospira briensis str. C-128. prokMSA_id:006591 M96397 Nitrosospira tenuis str. C-141. prokMSA_id:006589 M96404 Nitrosospira tenuis str. Nv1. prokMSA_id:006602 M96405 Nitrosospira tenuis str. Nv12. prokMSA_id:006525 U62867 clone DT-1.3. prokMSA_id:006552 U62868 clone DT-1.5. prokMSA_id:006526 U62869 clone DT-1.12. prokMSA_id:006593 U62875 clone DT-3.7. prokMSA_id:006512 U62876 clone DT-5.7. prokMSA_id:006594 U62877 clone DT-6.1. prokMSA_id:006527 U62878 clone DT-6.3. prokMSA_id:006513 U62879 clone DM-7.4. prokMSA_id:006616 U62880 clone DT-2.6. prokMSA_id:006617 U62881 clone DT-5.6. prokMSA_id:006618 U62882 clone DM-7.2. prokMSA_id:006619 U62883 clone DM-7.9. prokMSA_id:006620 U62886 clone DM6.5. prokMSA_id:006604 X84656 Nitrosospira sp. str. 40KI. prokMSA_id:006599 X84657 Nitrosospira sp. str. B6. prokMSA_id:006600 X84658 Nitrosospira sp. str. AF. prokMSA_id:006537 X84659 Nitrosospira sp. str. GM4. prokMSA_id:006561 X84660 Nitrosospira sp. str. D11. prokMSA_id:006605 X84661 Nitrosospira sp. str. T7. prokMSA_id:006504 X84662 Nitrosospira sp. str. L115. prokMSA_id:006538 X90820 Nitrosospira multiformis str. C-71 ATCC 25196 . prokMSA_id:006595 Y10127 Nitrosospira sp. NpAV strain NpAV prokMSA_id:006541 Z69094 str. marine sediment sample A2 from beneath salmon fish cage. prokMSA_id:006522 Z69104 str. marine sediment sample B1 20 m from salmon fish cage. prokMSA_id:006523 Z69125 str. marine sediment sample C2 40 m from salmon fish cage. prokMSA_id:006608 Z69146 str. Enrichment culture of soil sample A from pH 7 soil plot. prokMSA_id:006543 Z69155 str. soil sample A from pH 4.2 soil plot. prokMSA_id:006592 Z69156 str. soil sample A from pH 4.2 soil plot. prokMSA_id:006545 Z69164 str. soil sample A from pH 4.2 soil plot. prokMSA_id:006511 Z69177 str. soil sample B from pH 7 soil plot. prokMSA_id:006610 Z69197 str. soil sample C from pH 7 soil plot. 2.28.2.4.3.094 OTU 2 seqs prokMSA_id:075339 AJ532688 beta clone Gitt-KF-149 prokMSA_id:094942 AJ583175 beta- clone S15B-MN125 2.28.2.4.3.095 OTU 1 seq prokMSA_id:076034 AY159181 RO_clone_110 2.28.2.4.3.096 OTU 1 seq prokMSA_id:076215 AJ532690 beta clone Gitt-KF-186 2.28.2.4.3.097 OTU 1 seq prokMSA_id:076658 AY154612 earthworm cast clone c259 2.28.2.4.3.098 OTU 1 seq prokMSA_id:077019 AY154576 earthworm cast clone c218 2.28.2.4.3.099 OTU 1 seq prokMSA_id:078574 AJ536880 clone JG30-KF-AS41 2.28.2.4.3.100 OTU 2 seqs prokMSA_id:084165 AY242714 soil clone Tc127-75 prokMSA_id:084003 AY242716 soil clone TcA25 2.28.2.4.3.101 OTU 2 seqs prokMSA_id:086126 AY214628 beta clone SL2-1-E4 prokMSA_id:084231 AY214665 beta clone SL2-1-A4 2.28.2.4.3.102 OTU 1 seq prokMSA_id:085018 AY214660 beta clone SL2-1-B10 2.28.2.4.3.103 OTU 1 seq prokMSA_id:085647 AY221081 clone CCU25 2.28.2.4.3.104 OTU 1 seq prokMSA_id:086195 AY242703 soil clone TcA29 2.28.2.4.3.105 OTU 1 seq prokMSA_id:086386 AY221066 clone CCM6a 2.28.2.4.3.106 OTU 1 seq prokMSA_id:089584 AY328759 DSSD61 2.28.2.4.3.107 OTU 1 seq prokMSA_id:094005 AJ582035 beta clone JG36-GS-97 2.28.2.4.3.108 OTU 1 seq prokMSA_id:096029 AY424823 clone mv13.2 2.28.2.4.3.109 OTU 1 seq prokMSA_id:097041 AY424813 clone mv12.1 2.28.2.4.3.110 OTU 1 seq prokMSA_id:097957 AY381285 clone Lgja-54 2.28.2.4.3.111 OTU 1 seq prokMSA_id:097961 AY424830 clone mv13.9 2.28.2.4.3.999 poor quality 516 seqs prokMSA_id:075426 AB075087 clone:KCR17 prokMSA_id:075939 AB075191 clone:TSR13 prokMSA_id:092839 AB103547 ammonia-oxidizing cds clone:GC9-05 prokMSA_id:092298 AB103548 ammonia-oxidizing cds clone:GC9-06 prokMSA_id:092999 AB103555 ammonia-oxidizing cds clone:GC9-14 prokMSA_id:082632 AB107084 beta clone:e0w prokMSA_id:086559 AB107088 beta clone:h6w-1 prokMSA_id:083723 AB107089 beta clone:d6w-1 prokMSA_id:085755 AB107091 beta clone:e6w-3 prokMSA_id:086051 AB107093 beta clone:d8w-1 prokMSA_id:086447 AB107096 beta clone:d12w-1 prokMSA_id:086243 AB107099 beta clone:e12w-3 prokMSA_id:083460 AB107100 beta clone:c12w-3 prokMSA_id:085953 AB107858 Nitrosospira sp. clone:k prokMSA_id:083523 AB107860 Nitrosospira sp. clone:m prokMSA_id:083387 AB107861 Nitrosospira sp. clone:n prokMSA_id:082703 AB107864 beta clone:r prokMSA_id:083094 AB107868 Nitrosospira sp. clone:w prokMSA_id:085538 AB107870 beta clone:y prokMSA_id:084357 AB107871 beta clone:z prokMSA_id:083066 AB107872 beta clone:2c prokMSA_id:048932 AF006666 ammonia-oxidizing prokMSA_id:024428 AF006667 ammonia-oxidizing prokMSA_id:017858 AF063637 beta clone 400 FREE Z3 prokMSA_id:019337 AF063638 beta clone 400 FREE Z5 prokMSA_id:024116 AF078293 Grassland soil clone saf3_104 prokMSA_id:019969 AF128661 soil C072 prokMSA_id:044389 AF128684 soil S047 prokMSA_id:052729 AF128687 soil S057 prokMSA_id:027200 AF128698 soil S0137 prokMSA_id:043128 AF128722 soil C041 prokMSA_id:047926 AF134441 beta b4 prokMSA_id:027594 AF134442 beta b5 prokMSA_id:030382 AF134443 beta f1 prokMSA_id:019756 AF134449 beta PV2C prokMSA_id:028129 AF141403 beta clone CR-FL21 prokMSA_id:026177 AF141461 beta clone CRE-FL40 prokMSA_id:022463 AF141486 beta clone CRE-FL73 prokMSA_id:041285 AF141525 beta clone CRE-PA45 prokMSA_id:029600 AF142413 1.23.10 prokMSA_id:046712 AF145818 Metal-contaminated soil clone K20-15 prokMSA_id:027612 AF145820 Metal-contaminated soil clone K20-17 prokMSA_id:045358 AF157722 ammonia-oxidizing DGGE-PP-D prokMSA_id:045936 AF157723 ammonia-oxidizing DGGE-DF-C1 prokMSA_id:035547 AF157724 ammonia-oxidizing DGGE-DF-C2 prokMSA_id:045903 AF157725 ammonia-oxidizing DGGE-DF-C3 prokMSA_id:016615 AF157726 ammonia-oxidizing DGGE-DF-D prokMSA_id:035266 AF157727 ammonia-oxidizing DGGE-PP-A prokMSA_id:073688 AF157728 ammonia-oxidizing DGGE-AG-TF-C prokMSA_id:074499 AF157729 ammonia-oxidizing DGGE-AG-TF-E1 prokMSA_id:030888 AF157730 ammonia-oxidizing DGGE-AG-TNF-E1 prokMSA_id:070044 AF157731 ammonia-oxidizing DGGE-AG-NTF-E1 prokMSA_id:070043 AF157732 ammonia-oxidizing DGGE-AG-NTNF-E1 prokMSA_id:069923 AF157733 ammonia-oxidizing DGGE-SC-NTF-E1 prokMSA_id:073363 AF157734 ammonia-oxidizing DGGE-SC-TNF-E1 prokMSA_id:072395 AF157735 ammonia-oxidizing DGGE-SC-TF-E1 prokMSA_id:037606 AF157736 ammonia-oxidizing DGGE-AG-TF-C1 prokMSA_id:050534 AF157737 ammonia-oxidizing DGGE-AG-TNF-C1 prokMSA_id:070119 AF157738 ammonia-oxidizing DGGE-AG-NTF-C1 prokMSA_id:027723 AF157739 ammonia-oxidizing DGGE-AG-NTNF-C1 prokMSA_id:019923 AF157740 ammonia-oxidizing DGGE-SC-TNF-C1 prokMSA_id:028769 AF157741 ammonia-oxidizing DGGE-SC-TF-C1 prokMSA_id:030489 AF175617 WJGRT-74 prokMSA_id:046061 AF175665 WJGRT-187 prokMSA_id:036409 AF178087 beta E2_pH4/50/FL prokMSA_id:070172 AF178088 beta E3_pH4/50/FP prokMSA_id:050965 AF178089 beta E4_pH4/50/FL prokMSA_id:047486 AF178090 beta E5_pH4/50/FL prokMSA_id:019902 AF178091 beta E6_pH4/50/FL prokMSA_id:072150 AF178092 beta E7_pH4/50/FL prokMSA_id:039369 AF178093 beta E8_pH4/50/FL prokMSA_id:035288 AF178094 beta E9_pH4/50/FL prokMSA_id:023934 AF178095 beta E10_pH4/50/FL prokMSA_id:052902 AF178096 beta E11_pH4/50/FL prokMSA_id:047135 AF178097 beta E12_pH4/5/UP prokMSA_id:052117 AF178098 beta E14_pH4/50/UL prokMSA_id:028353 AF178099 beta E15_pH4/50/UP prokMSA_id:053616 AF178100 beta E16_pH4/5/FP prokMSA_id:034090 AF178101 beta E17_pH4/50/FL prokMSA_id:032389 AF178102 beta E18_pH4/5/FL prokMSA_id:074856 AF178103 beta E19_pH4/5/UP prokMSA_id:049679 AF178105 beta E21_pH7/50/FL prokMSA_id:046262 AF178106 beta E22_pH7/50/FL prokMSA_id:031852 AF178107 beta E23_pH7/50/FL prokMSA_id:040341 AF178108 beta E24_pH7/50/FL prokMSA_id:074544 AF178109 beta E25_pH7/50/FL prokMSA_id:034532 AF178110 beta E26_pH7/50/FL prokMSA_id:018306 AF178111 beta E28_pH7/50/UL prokMSA_id:038023 AF178112 beta E29_pH7/50/UL prokMSA_id:046427 AF220533 prokMSA_id:043318 AF268855 glc12 prokMSA_id:022882 AF268861 glc18 prokMSA_id:046797 AF268868 glc25 prokMSA_id:045544 AF281111 sp. sbr-gs21 prokMSA_id:049447 AF298767 PL2 prokMSA_id:027775 AF304046 Nitrosomonas sp. B9 prokMSA_id:043953 AF304047 Nitrosospira sp. B10 prokMSA_id:021779 AF311985 beta isolate DGGE-1 prokMSA_id:032038 AF314444 PHOS-HC27 prokMSA_id:036500 AF314446 PHOS-HE60 prokMSA_id:048832 AF320917 Lake Michigan sediment LMBGA4 prokMSA_id:072846 AF320918 Lake Michigan sediment LMBGA7 prokMSA_id:032753 AF320919 Lake Michigan sediment LMRTGA14 prokMSA_id:028494 AF320920 Lake Michigan sediment LMBGA6-28 prokMSA_id:074101 AF320921 Lake Michigan sediment LMRTGA6 prokMSA_id:032208 AF320922 Lake Michigan sediment LMBGA6-25 prokMSA_id:072888 AF320923 Lake Michigan sediment LMRTGA11 prokMSA_id:072414 AF320924 Lake Michigan sediment LMRTGA4 prokMSA_id:016904 AF320925 Lake Michigan sediment LMBGA6-26 prokMSA_id:074356 AF320928 Lake Michigan sediment LMBGA6 prokMSA_id:070206 AF320930 Lake Michigan sediment LMRTGA15 prokMSA_id:072082 AF320955 Lake Michigan sediment LMBA39 prokMSA_id:035044 AF358004 clone LO13.12 prokMSA_id:067926 AF365849 clone BT60PA10BF12 prokMSA_id:045054 AF367232 clone PDS3 prokMSA_id:042467 AF367239 clone PNS4 prokMSA_id:022905 AF392635 clone SCB5 prokMSA_id:027804 AF417869 antarctic soil clone bh1.16 prokMSA_id:028747 AF422603 clone t032 prokMSA_id:037736 AF428583 clone CRD99-05 prokMSA_id:044528 AF428584 clone CRD99-06 prokMSA_id:016923 AF428623 clone CRD99-45 prokMSA_id:027913 AF428731 clone CR98-5-01 prokMSA_id:040188 AF428736 clone CR98-5-06 prokMSA_id:037849 AF428753 clone CR98-5-23 prokMSA_id:024069 AF428761 clone CR98-5-31 prokMSA_id:038456 AF428769 clone CR98-5-39 prokMSA_id:045723 AF428772 clone CR98-5-42 prokMSA_id:046237 AF428775 clone CR98-5-45 prokMSA_id:049886 AF428778 clone CR98-5-48 prokMSA_id:026300 AF428782 clone CR98-5-52 prokMSA_id:039649 AF428784 clone CR98-5-54 prokMSA_id:049900 AF428820 clone CR98-24-14 prokMSA_id:050837 AF428842 clone CR98-24-36 prokMSA_id:041608 AF428852 clone CR98-24-46 prokMSA_id:037903 AF428891 clone CR98-35-09 prokMSA_id:022562 AF428897 clone CR98-35-15 prokMSA_id:044997 AF428898 clone CR98-35-16 prokMSA_id:046187 AF428945 clone CR98-35-63 prokMSA_id:043747 AF428962 clone CR99-35-04 prokMSA_id:032803 AF429028 clone CR99-35-70 prokMSA_id:025582 AF429050 clone CR99-7-16 prokMSA_id:023792 AF429071 clone CR99-7-37 prokMSA_id:020061 AF429161 clone CR99-24-51 prokMSA_id:036692 AF429183 clone CR99-24-73 prokMSA_id:048603 AF429214 clone CR99-2-28 prokMSA_id:033520 AF429230 clone CR99-2-44 prokMSA_id:077081 AF431269 beta clone C32.31SM prokMSA_id:077140 AF431294 beta clone S37.46SM prokMSA_id:075335 AF431300 beta clone N42.19PG prokMSA_id:076245 AF431317 beta clone S51.30PG prokMSA_id:034582 AF445110 clone Tc45 prokMSA_id:068575 AF486701 clone E5-46-HS3I-220 prokMSA_id:056700 AF486793 clone E5-46-HS3P-317 prokMSA_id:060488 AF488653 Beta Z18 prokMSA_id:060485 AF488657 Beta Z22 prokMSA_id:060484 AF488658 Beta Z23 prokMSA_id:070776 AF489682 clone K_2 prokMSA_id:071645 AF489684 clone K_4 prokMSA_id:074029 AF489686 clone K_6 prokMSA_id:071018 AF489688 clone K_8 prokMSA_id:070482 AF489689 clone K_9 prokMSA_id:074073 AF489690 clone R_1 prokMSA_id:073126 AF489691 clone R_2 prokMSA_id:071062 AF489692 clone R_3 prokMSA_id:070069 AF489693 clone R_4 prokMSA_id:067041 AF499427 clone BL-93 prokMSA_id:061798 AF510863 ammonia-oxidizing clone SP5 prokMSA_id:062027 AF523330 clone P4-24 prokMSA_id:077553 AF527014 Nitrosomonas sp. 21Fb prokMSA_id:077314 AF527015 Nitrosomonas sp. 26Ft prokMSA_id:077332 AF527016 Nitrosomonas sp. 19Fb prokMSA_id:077475 AF527021 Nitrosomonas sp. 11Fb prokMSA_id:077472 AF527022 Nitrosomonas sp. 50Ft prokMSA_id:077295 AF527025 Nitrosomonas sp. 55Fb prokMSA_id:072098 AF530974 Beta so30 prokMSA_id:055326 AF530984 Beta wo07 prokMSA_id:073945 AF530992 Beta wo38 prokMSA_id:069680 AF530995 Beta wo51 prokMSA_id:070981 AF531007 Beta zo36 prokMSA_id:071340 AF531017 Beta Mzj2 prokMSA_id:057861 AF546928 clone E5-46-BH1-12/7/98-001 prokMSA_id:057859 AF546931 clone E5-46-BH1-12/7/98-004 prokMSA_id:057858 AF546932 clone E5-46-BH1-12/7/98-005 prokMSA_id:057856 AF546933 clone E5-46-BH1-12/7/98-006 prokMSA_id:057843 AF546948 clone E5-46-BH1-12/7/98-021 prokMSA_id:057842 AF546949 clone E5-46-BH1-12/7/98-022 prokMSA_id:057838 AF546950 clone E5-46-BH1-12/7/98-023 prokMSA_id:057841 AF546951 clone E5-46-BH1-12/7/98-024 prokMSA_id:057836 AF546953 clone E5-46-BH1-12/7/98-026 prokMSA_id:006554 AJ003753 clone Gmw1l5. prokMSA_id:006529 AJ003754 clone Gmw3l2. prokMSA_id:006624 AJ003755 clone Gmw1l2. prokMSA_id:033295 AJ003766 beta clone Ijs6 prokMSA_id:041184 AJ003768 beta clone Ijs13 prokMSA_id:044199 AJ003769 beta clone Me2 prokMSA_id:032833 AJ003770 beta clone Me9 prokMSA_id:021059 AJ003771 beta clone Me11 prokMSA_id:046351 AJ003772 beta clone Me15 prokMSA_id:047192 AJ006012 clone TBS2 prokMSA_id:029794 AJ011151 3-7 clone 3-7 prokMSA_id:023037 AJ132047 beta Band0695 prokMSA_id:036479 AJ132048 beta Band06952 prokMSA_id:045470 AJ132049 beta Band06953 prokMSA_id:037433 AJ132050 beta Band06954 prokMSA_id:018285 AJ132056 beta Band07964 prokMSA_id:074613 AJ132057 beta Band07963 prokMSA_id:043558 AJ132058 beta Band07962 prokMSA_id:046925 AJ132059 beta Band07961 prokMSA_id:025715 AJ132060 beta BandBr1 prokMSA_id:031363 AJ132061 beta BandBr2 prokMSA_id:022880 AJ132062 beta BandBr3 prokMSA_id:036512 AJ231049 beta clone 4 prokMSA_id:035003 AJ231062 beta clone 17 prokMSA_id:046358 AJ232788 clone TRS25 prokMSA_id:071778 AJ238198 Nitrosospira -1 prokMSA_id:023444 AJ238199 Nitrosospira -2 prokMSA_id:019052 AJ238200 Nitrosospira -3 prokMSA_id:072497 AJ238201 Nitrosospira -4 prokMSA_id:032737 AJ238202 Nitrosospira -5 prokMSA_id:021246 AJ238203 Nitrosospira -6 prokMSA_id:023210 AJ245751 Nitrosomonas DGGE band6a1 prokMSA_id:037636 AJ245752 Nitrosomonas DGGE band6a2 prokMSA_id:034459 AJ245753 Nitrosomonas DGGE band6a3 prokMSA_id:034066 AJ245754 Nitrosomonas DGGE band6a4 prokMSA_id:025829 AJ245755 Nitrosomonas DGGE band6a5 prokMSA_id:034675 AJ245756 Nitrosomonas DGGE band6c prokMSA_id:029014 AJ245993 Beta- Wekr-1 prokMSA_id:044210 AJ245994 Beta- Wekr-2 prokMSA_id:047609 AJ245995 Beta- Wekr-3 prokMSA_id:025105 AJ271095 Nitrosospira rt16S-1 clone rt16S-1 prokMSA_id:037858 AJ271096 Nitrosospira rt16S-2 clone rt16S-2 prokMSA_id:053027 AJ271097 Nitrosospira rt16S-3 clone rt16S-3 prokMSA_id:048896 AJ271098 Nitrosospira rt16S-4 clone rt16S-4 prokMSA_id:041425 AJ271099 Nitrosospira rt16S-5 clone rt16S-5 prokMSA_id:028239 AJ271100 Nitrosospira rt16S-6 clone rt16S-6 prokMSA_id:050703 AJ271101 Nitrosospira rt16S-7 clone rt16S-7 prokMSA_id:020296 AJ271102 Nitrosospira rt16S-8 clone rt16S-8 prokMSA_id:052431 AJ271103 Nitrosospira rt16S-9 clone rt16S-9 prokMSA_id:027738 AJ272550 beta CSP2 prokMSA_id:024280 AJ272551 beta WSS3 prokMSA_id:038750 AJ272552 beta CSP4 prokMSA_id:038411 AJ272553 beta CSP5 prokMSA_id:022056 AJ272555 beta WSS8 prokMSA_id:021130 AJ272556 beta CSP9 prokMSA_id:031304 AJ272557 beta CSP10 prokMSA_id:023383 AJ272559 beta WSS12 prokMSA_id:047984 AJ272560 beta CSP13 prokMSA_id:030383 AJ272561 beta CSP14 prokMSA_id:041325 AJ275875 Nitrosospira SM-187 prokMSA_id:052377 AJ275879 Nitrosospira SM-173 prokMSA_id:034965 AJ275888 Nitrosospira SM-168 prokMSA_id:050961 AJ275889 beta SM-61 prokMSA_id:049937 AJ296605 Nitrosomonas sp. clone GR-Sh2-23 prokMSA_id:054084 AJ296606 Nitrosomonas sp. clone GR-Sh2-24 prokMSA_id:070712 AJ297416 beta GaN3a prokMSA_id:070338 AJ298742 Nitrosospira sp. Nsp12 isolate Nsp12 prokMSA_id:044194 AJ298744 Nitrosospira sp. Nsp1 isolate Nsp1 prokMSA_id:023808 AJ299043 beta Ch4E2 prokMSA_id:023152 AJ299044 beta Ch3E prokMSA_id:025049 AJ299045 beta Ch6E3 prokMSA_id:032966 AJ299046 beta Ch1E prokMSA_id:033350 AJ299047 beta Ch6E1 prokMSA_id:039434 AJ299048 beta Ba0.1 prokMSA_id:040670 AJ299049 beta Ba0.25-2 prokMSA_id:046823 AJ299050 beta Ba1.0 prokMSA_id:018409 AJ299051 beta Ch6S prokMSA_id:028067 AJ299053 beta Ch2S prokMSA_id:048859 AJ299054 beta Ch1S prokMSA_id:044461 AJ299055 beta Ch5E prokMSA_id:039096 AJ299056 beta Ch3S prokMSA_id:022501 AJ299057 beta Ch2E prokMSA_id:078098 AJ307984 Nitrosospira mRNA isolate DGGE band MC2.1 prokMSA_id:038991 AJ308287 clone F99_25 prokMSA_id:034441 AJ311609 beta DGGE band GRC-1 prokMSA_id:016787 AJ311610 beta DGGE band GRC-2 prokMSA_id:030139 AJ311611 beta DGGE band GRC-3 prokMSA_id:063163 AJ316209 beta DGGE Band 101 prokMSA_id:063164 AJ316210 beta DGGE Band 103 prokMSA_id:063161 AJ316212 beta DGGE Band 110 prokMSA_id:063159 AJ316213 beta DGGE Band 115 prokMSA_id:063155 AJ316214 beta DGGE Band 118 prokMSA_id:063152 AJ316215 beta DGGE Band 423 prokMSA_id:061719 AJ416221 clone Sta3-11 prokMSA_id:055390 AJ416267 clone Sta5-25 prokMSA_id:045783 AJ416650 beta clone env.S003 prokMSA_id:074401 AJ421209 clone C4-K2 prokMSA_id:056265 AJ441267 ammonia-oxidizing isolate F31 prokMSA_id:067561 AJ441269 ammonia-oxidizing isolate F33 prokMSA_id:067556 AJ441270 ammonia-oxidizing isolate F34 prokMSA_id:067551 AJ441273 ammonia-oxidizing isolate F37 prokMSA_id:067553 AJ441275 ammonia-oxidizing isolate F39 prokMSA_id:067549 AJ441276 ammonia-oxidizing isolate F40 prokMSA_id:060961 AJ505867 beta clone SC67 prokMSA_id:060960 AJ505868 beta clone SC74 prokMSA_id:060959 AJ505869 beta clone SC89 prokMSA_id:060958 AJ505870 beta clone SC101 prokMSA_id:060957 AJ505871 beta clone SC104 prokMSA_id:060956 AJ505872 beta clone SC94 prokMSA_id:060955 AJ505873 beta clone SC59 prokMSA_id:060952 AJ505874 beta clone SC61 prokMSA_id:060953 AJ505875 beta clone SC64 prokMSA_id:060954 AJ505876 beta clone SC69 prokMSA_id:060949 AJ505877 beta clone SC78 prokMSA_id:060950 AJ505878 beta clone SC82 prokMSA_id:060948 AJ505879 beta clone SC93 prokMSA_id:056668 AJ505880 beta clone SC100 prokMSA_id:060951 AJ505881 beta clone SC102 prokMSA_id:056198 AJ505882 beta clone SC103 prokMSA_id:060947 AJ505883 beta clone SC105 prokMSA_id:060946 AJ505884 beta clone SC63 prokMSA_id:060945 AJ505885 beta clone SC65 prokMSA_id:060944 AJ505886 beta clone SC68 prokMSA_id:060943 AJ505887 beta clone SC84 prokMSA_id:074683 AJ505888 beta clone SC95 prokMSA_id:060942 AJ505889 beta clone C4 prokMSA_id:060941 AJ505890 beta clone C5 prokMSA_id:060940 AJ505891 beta clone B2 prokMSA_id:055926 AJ505892 beta clone C3 prokMSA_id:060939 AJ505893 beta clone B8 prokMSA_id:060938 AJ505894 beta clone B9 prokMSA_id:060937 AJ505895 beta clone B10 prokMSA_id:060936 AJ505896 beta clone A10 prokMSA_id:060935 AJ505897 beta clone A7 prokMSA_id:070222 AJ505898 beta clone C1 prokMSA_id:060932 AJ505899 beta clone A9 prokMSA_id:060931 AJ505900 beta clone C6 prokMSA_id:060930 AJ505901 beta clone C2 prokMSA_id:060927 AJ505902 beta clone B2 prokMSA_id:077661 AJ508149 clone J1_3 prokMSA_id:077758 AJ508154 clone J2_9 prokMSA_id:077957 AJ508158 clone J2_14 prokMSA_id:057315 AJ518129 clone Mul01-57 prokMSA_id:057306 AJ518144 clone Mul01-92 prokMSA_id:057170 AJ518355 clone Neu2P3-86 prokMSA_id:096785 AJ555430 clone BC03 prokMSA_id:098319 AJ555432 clone BC05 prokMSA_id:086774 AJ561127 beta clone ANT-RB 50 prokMSA_id:086771 AJ561131 beta clone ANT-RB 57 prokMSA_id:093960 AJ582589 clone M50-10 prokMSA_id:029946 AY037593 soil clone S065 prokMSA_id:061268 AY044030 clone N56P.06WL prokMSA_id:061185 AY080918 clone UBP13CH2 prokMSA_id:061183 AY080919 clone UBP12CH1 prokMSA_id:061181 AY080921 clone UBP12OH1 prokMSA_id:061176 AY080922 clone UBP13OH1 prokMSA_id:061175 AY080926 clone UBP12OH2 prokMSA_id:060886 AY135883 clone SG1-109 prokMSA_id:058782 AY138527 Nitrosomonas sp. clone DNB_Y30 prokMSA_id:056034 AY150275 beta DGGE gel band MG3-JLMBR prokMSA_id:058027 AY150276 Nitrosospira sp. DGGE gel band MG4-JLMBR prokMSA_id:055740 AY150277 Nitrosospira sp. DGGE gel band MG5-JLMBR prokMSA_id:056273 AY150280 Nitrosospira sp. DGGE gel band MG8-JLMBR prokMSA_id:056718 AY150281 Nitrosospira sp. DGGE gel band MG12-JLMBR prokMSA_id:078369 AY186225 clone AZP2-13 prokMSA_id:079619 AY192303 beta clone W3-1B prokMSA_id:080639 AY192305 beta clone W3-4C prokMSA_id:084097 AY214705 beta clone SL2-2-D4F prokMSA_id:084682 AY214716 beta clone SL2-2-E8F prokMSA_id:084432 AY242704 soil clone TcA9 prokMSA_id:091342 AY258613 DGGE Band 15 prokMSA_id:090314 AY274170 Nitrosospira sp. SSCP band S1 prokMSA_id:089860 AY274171 Nitrosospira sp. SSCP band S2 prokMSA_id:089296 AY274172 Nitrosospira sp. SSCP band S3 prokMSA_id:089263 AY274173 Nitrosospira sp. SSCP band S4 prokMSA_id:088329 AY274174 beta SSCP band S5 prokMSA_id:088593 AY274175 Nitrosospira sp. SSCP band S6 prokMSA_id:089093 AY274177 beta SSCP band S8 prokMSA_id:089530 AY274178 beta SSCP band S9 prokMSA_id:089162 AY274186 beta DGGE band D2 prokMSA_id:089773 AY274187 beta DGGE band D3 prokMSA_id:090553 AY274188 Nitrosospira sp. DGGE band D4 prokMSA_id:089099 AY274189 Nitrosospira sp. DGGE band D5 prokMSA_id:089281 AY274191 Nitrosospira sp. DGGE band D7 prokMSA_id:088234 AY274192 Nitrosospira sp. DGGE band D8 prokMSA_id:090010 AY274193 Nitrosospira sp. DGGE band D9 prokMSA_id:088678 AY274196 Nitrosospira sp. DGGE band D12 prokMSA_id:087162 AY283110 gamma clone NS-07 prokMSA_id:087680 AY293076 Nitrosospira sp. clone SBMCPa1 prokMSA_id:087070 AY293086 Nitrosospira sp. clone SBMCPe8 prokMSA_id:094003 AY357977 beta cEV38 prokMSA_id:092366 AY359826 clone cEIII9 prokMSA_id:094232 AY360227 Nitrosomonas sp. clone pYT1 prokMSA_id:093845 AY361923 clone P8-GEN-11 prokMSA_id:094961 AY369154 clone F-OTU17 prokMSA_id:094324 AY369155 clone F-OTU18 prokMSA_id:096030 AY391653 soil clone M37 prokMSA_id:097308 AY391666 soil clone M50 prokMSA_id:098538 AY391709 soil clone M93 prokMSA_id:095717 AY395146 clone D30ST prokMSA_id:006590 L35508 Nitrosospira multiformis ATCC 25198. prokMSA_id:006516 M96401 Nitrosospira multiformis str. C-71 ATCC 25196 . prokMSA_id:006601 NONE Nitrosospira multiformis. prokMSA_id:006588 U09544 clone AEM3. prokMSA_id:038422 U35605 97R6 from Wisconsin agricultural soil prokMSA_id:019324 U56606 Nitrosospira sp. clone H1 prokMSA_id:035378 U56607 Nitrosospira sp. clone H2 prokMSA_id:028930 U56608 Nitrosospira sp. clone H3 prokMSA_id:035862 U56609 Nitrosospira sp. clone H5 prokMSA_id:022830 U56610 Nitrosospira sp. clone H6 prokMSA_id:027301 U56611 Nitrosospira sp. clone H7 prokMSA_id:006509 U56612 Nitrosospira sp. prokMSA_id:006510 U56613 Nitrosospira sp. prokMSA_id:041112 U56614 Nitrosospira sp. clone H13 prokMSA_id:052299 U56615 Nitrosospira sp. clone H14 prokMSA_id:052129 U56616 Nitrosospira sp. clone H16 prokMSA_id:052788 U56617 Nitrosospira sp. clone H17 prokMSA_id:052892 U56618 Nitrosospira sp. clone H18 prokMSA_id:027979 U56619 Nitrosospira sp. clone H20 prokMSA_id:024299 U56620 Nitrosospira sp. clone H37 prokMSA_id:006597 U56621 Nitrosospira sp. prokMSA_id:006563 U56622 Nitrosospira sp. prokMSA_id:043063 U56623 Nitrosospira sp. clone D18 prokMSA_id:050575 U56624 Nitrosospira sp. clone D23 prokMSA_id:006564 U56625 Nitrosospira sp. prokMSA_id:019029 U56627 Nitrosospira sp. clone D110 prokMSA_id:006562 U57616 Nitrosomonas sp. prokMSA_id:073030 U57617 ammonia-oxidizing prokMSA_id:006507 U57620 unnamed organism. prokMSA_id:006519 U57621 unnamed organism. prokMSA_id:006508 U57622 unnamed organism. prokMSA_id:049269 U70444 beta 52243 prokMSA_id:023015 U70445 beta 52244 prokMSA_id:073109 U70446 beta 52245 prokMSA_id:006578 Z69087 str. marine sediment sample A1 from beneath salmon fish cage. prokMSA_id:006575 Z69088 str. marine sediment sample A1 from beneath salmon fish cage. prokMSA_id:006576 Z69089 str. marine sediment sample A1 from beneath salmon fish cage. prokMSA_id:006577 Z69090 str. marine sediment sample A1 from beneath salmon fish cage. prokMSA_id:030097 Z69092 Beta- sp. clone EnvA2-1 prokMSA_id:006580 Z69093 str. marine sediment sample A2 from beneath salmon fish cage. prokMSA_id:006581 Z69095 str. marine sediment sample A2 from beneath salmon fish cage. prokMSA_id:055019 Z69096 Beta- sp. clone EnvA2-8 prokMSA_id:006579 Z69098 str. marine sediment sample A2 from beneath salmon fish cage. prokMSA_id:027490 Z69099 Beta- sp. clone EnvB1-4 prokMSA_id:006582 Z69100 str. marine sediment sample B1 20 m from salmon fish cage. prokMSA_id:020337 Z69101 Beta- sp. clone EnvB1-6 prokMSA_id:006583 Z69102 str. marine sediment sample B1 20 m from salmon fish cage. prokMSA_id:006584 Z69103 str. marine sediment sample B1 20 m from salmon fish cage. prokMSA_id:047373 Z69105 Beta- sp. clone EnvB1-24 prokMSA_id:037475 Z69106 Beta- sp. clone EnvB2-6 prokMSA_id:046144 Z69107 Beta- sp. clone EnvB2-9 prokMSA_id:006585 Z69108 str. marine sediment sample B2 20 m from salmon fish cage. prokMSA_id:006586 Z69109 str. marine sediment sample B2 20 m from salmon fish cage. prokMSA_id:071100 Z69110 Beta- sp. clone EnvB2-16 prokMSA_id:027064 Z69111 Beta- sp. clone EnvB2-17 prokMSA_id:028379 Z69112 Beta- sp. clone EnvC1-2 prokMSA_id:047911 Z69113 Beta- sp. clone EnvC1-4 prokMSA_id:038292 Z69114 Beta- sp. clone EnvC1-5 prokMSA_id:047827 Z69115 Beta- sp. clone EnvC1-10 prokMSA_id:049482 Z69116 Beta- sp. clone EnvC1-17 prokMSA_id:036675 Z69117 Beta- sp. clone EnvC1-18 prokMSA_id:026968 Z69118 Beta- sp. clone EnvC1-19 prokMSA_id:022220 Z69119 Beta- sp. clone EnvC1-23 prokMSA_id:036447 Z69120 Beta- sp. clone EnvC1-24 prokMSA_id:041835 Z69121 Beta- sp. clone EnvC2-4 prokMSA_id:051776 Z69122 Beta- sp. clone EnvC2-6 prokMSA_id:034499 Z69123 Beta- sp. clone EnvC2-7 prokMSA_id:020122 Z69124 Beta- sp. clone EnvC2-19 prokMSA_id:033644 Z69126 Beta- sp. clone EnvC2-24 prokMSA_id:006566 Z69127 str. Marine sediment sample A1 from beneath salmon fish cage prokMSA_id:046356 Z69128 Beta- sp. clone A1aW3 prokMSA_id:006567 Z69129 str. Marine sediment sample A1 from beneath salmon fish cage third prokMSA_id:006568 Z69130 str. Marine sediment sample A2 from beneath salmon fish cage first prokMSA_id:030940 Z69131 Beta- sp. clone A2aW3 prokMSA_id:006569 Z69132 str. Marine sediment sample A2 from beneath salmon fish cage first prokMSA_id:006570 Z69133 str. Marine sediment sample B1 - 20m from salmon fish cage second prokMSA_id:030586 Z69135 Beta- sp. clone B1bM2 prokMSA_id:006571 Z69136 str. Marine sediment sample B1 - 20m from salmon fish cage second prokMSA_id:006572 Z69137 str. Marine sediment sample B2 - 20m from salmon fish cage second prokMSA_id:025432 Z69141 Beta- sp. clone B2bW1 prokMSA_id:006573 Z69142 str. Marine sediment sample C1 - 40 m from salmon fish cage third prokMSA_id:070148 Z69143 Beta- sp. clone C1bW1 prokMSA_id:006574 Z69145 str. Enrichment culture of soil sample A from pH 5 soil plot. prokMSA_id:039164 Z69147 Beta- sp. clone pH4.2A/4 prokMSA_id:038652 Z69148 Beta- sp. clone pH4.2A/6 prokMSA_id:039021 Z69149 Beta- sp. clone pH4.2A/17 prokMSA_id:049881 Z69150 Beta- sp. clone pH4.2A/19 prokMSA_id:049975 Z69152 Beta- sp. clone pH4.2A/24 prokMSA_id:040784 Z69153 Beta- sp. clone pH4.2A/27 prokMSA_id:016968 Z69154 Beta- sp. clone pH4.2A/49 prokMSA_id:006544 Z69157 str. soil sample A from pH 4.2 soil plot. prokMSA_id:048145 Z69158 Beta- sp. clone pH4.2A/A2 prokMSA_id:018557 Z69159 Beta- sp. clone pH4.2A/C prokMSA_id:020442 Z69160 Beta- sp. clone pH4.2A/D prokMSA_id:026391 Z69161 Beta- sp. clone pH4.2A/D2 prokMSA_id:019283 Z69162 Beta- sp. clone pH4.2A/E2 prokMSA_id:026357 Z69163 Beta- sp. clone pH4.2A/F2 prokMSA_id:047194 Z69166 Beta- sp. clone pH4.2A/J2 prokMSA_id:038065 Z69167 Beta- sp. clone pH4.2A/K2 prokMSA_id:048936 Z69168 Beta- sp. clone pH4.2A/L2 prokMSA_id:035399 Z69169 Beta- sp. clone pH4.2B/16 prokMSA_id:043244 Z69170 Beta- sp. clone pH4.2B/32 prokMSA_id:036003 Z69171 Beta- sp. clone pH4.2B/35 prokMSA_id:046721 Z69172 Beta- sp. clone pH4.2B/38 prokMSA_id:036129 Z69173 Beta- sp. clone pH4.2B/41 prokMSA_id:025109 Z69174 Beta- sp. clone pH4.2B/43 prokMSA_id:038067 Z69175 Beta- sp. clone pH7B/B2 prokMSA_id:033758 Z69176 Beta- sp. clone pH7B/C3 prokMSA_id:050128 Z69178 Beta- sp. clone pH7B/F2 prokMSA_id:031453 Z69179 Beta- sp. clone pH7B/G2 prokMSA_id:020769 Z69180 Beta- sp. clone pH7B/L2 prokMSA_id:042506 Z69181 Beta- sp. clone pH7B/O2 prokMSA_id:033459 Z69182 Beta- sp. clone pH7B/S2 prokMSA_id:034663 Z69183 Beta- sp. clone pH7B/V2 prokMSA_id:043653 Z69184 Beta- sp. clone pH7B/W2 prokMSA_id:040364 Z69185 Beta- sp. clone pH7B/Y2 prokMSA_id:050799 Z69186 Beta- sp. clone pH7B/Z2 prokMSA_id:006546 Z69187 str. soil sample C from pH 7 soil plot. prokMSA_id:020830 Z69188 Beta- sp. clone pH7C/23 prokMSA_id:027306 Z69189 Beta- sp. clone pH7C/24 prokMSA_id:028337 Z69190 Beta- sp. clone pH7C/25 prokMSA_id:042747 Z69191 Beta- sp. clone pH7C/30 prokMSA_id:042361 Z69192 Beta- sp. clone pH7C/37 prokMSA_id:074491 Z69193 Beta- sp. clone pH7C/41 prokMSA_id:049365 Z69194 Beta- sp. clone pH7C/48 prokMSA_id:028588 Z69195 Beta- sp. clone pH7C/53 2.28.2.4.4 NMN.COMMUNIS_SUBGROUP 17 seqs 2.28.2.4.4.001 OTU 1 seq prokMSA_id:022229 AJ297415 beta GaN50304 2.28.2.4.4.002 OTU 1 seq prokMSA_id:029143 AF351576 beta clone NJ154 2.28.2.4.4.005 OTU 6 seqs prokMSA_id:035231 AF272417 Nitrosomonas communis prokMSA_id:046257 AF272425 Nitrosomonas nitrosa prokMSA_id:048601 AJ298732 Nitrosomonas communis isolate Nm2 prokMSA_id:029401 AJ298733 Nitrosomonas sp. Nm33 isolate Nm33 prokMSA_id:049804 AJ298735 Nitrosomonas sp. Nm41 isolate Nm41 prokMSA_id:078042 AJ298740 Nitrosomonas nitrosa isolate Nm90 2.28.2.4.4.999 poor quality 9 seqs prokMSA_id:032676 AF272419 Nitrosomonas sp. NM 33 prokMSA_id:068041 AF365709 clone BT60DS1BE8 prokMSA_id:096334 AJ555429 clone BC02 prokMSA_id:096198 AJ555440 clone AU02 prokMSA_id:006632 Z46930 Nitrosomonas sp. str. Nm58. prokMSA_id:006633 Z46981 Nitrosomonas communis str. Nm2. prokMSA_id:006634 Z46982 Nitrosomonas sp. str. Nm33. prokMSA_id:006635 Z46983 Nitrosomonas sp. str. Nm41. prokMSA_id:006636 Z46986 Nitrosomonas nitrosa str. Nm90. 2.28.2.4.5 ENVIRONMENTAL_CLONE_AEM5_SUBGROUP 3 seqs 2.28.2.4.5.999 poor quality 3 seqs prokMSA_id:006639 U09545 clone AEM4. prokMSA_id:006637 U09546 clone AEM5. prokMSA_id:006638 U09547 clone AEM6. 2.28.2.4.6 NMN.EUROPAEA_SUBGROUP 189 seqs 2.28.2.4.6.010 OTU 8 seqs prokMSA_id:006648 AF037105 str. M93. prokMSA_id:018274 AF272415 Nitrosomonas sp. NM 104 prokMSA_id:016548 AF272416 Nitrosomonas sp. NM 107 prokMSA_id:029792 AF287297 Nitrosococcus mobilis Nc2 prokMSA_id:051394 AF353159 Nitrosomonas sp. TNO632 prokMSA_id:026740 AF386747 Nitrosomonas sp. BF16c52 prokMSA_id:021044 AJ275890 Nitrosomonas SM-26 prokMSA_id:026294 AJ298728 Nitrosococcus mobilis isolate Nc2 2.28.2.4.6.011 OTU 9 seqs prokMSA_id:040104 AF272413 Nitrosomonas halophila prokMSA_id:078355 AJ298731 Nitrosomonas halophila isolate Nm1 prokMSA_id:071084 AJ431350 Nitrosomonas sp. isolate ikaite un-c16 prokMSA_id:071515 AJ431351 Nitrosomonas sp. isolate ikaite un-c25 prokMSA_id:028347 AY026313 Ammonia-oxidizing An1 prokMSA_id:040532 AY026314 Ammonia-oxidizing ANs2 prokMSA_id:052558 AY026315 Ammonia-oxidizing ANs3 prokMSA_id:048996 AY026316 Ammonia-oxidizing ANs4 prokMSA_id:018718 AY026317 Ammonia-oxidizing ANs5 2.28.2.4.6.013 OTU 43 seqs prokMSA_id:006642 AB000701 Nitrosomonas sp. str. GH22. prokMSA_id:006643 AB000702 Nitrosomonas sp. str. HPC101. prokMSA_id:021019 AB031960 Nitrosomonas sp. TK794 prokMSA_id:076457 AB070982 Nitrosomonas europaea strain: ATCC25978 prokMSA_id:077085 AB070983 Nitrosomonas europaea strain: ATCC19178 prokMSA_id:053386 AB079053 Nitrosomonas sp. ENI-11 prokMSA_id:058032 AB093545 Nitrosomonas sp. B2 prokMSA_id:006649 AF037106 Nitrosomonas europaea str. M103. prokMSA_id:006645 AF063632 clone 400 AGG A64. prokMSA_id:006646 AF063634 clone 100 AGG X34. prokMSA_id:006647 AF063635 clone 100 AGG X42. prokMSA_id:006651 AF080185 Nitrosomonas TK794 str. TK794. prokMSA_id:028730 AF134444 beta PV3 prokMSA_id:051128 AF134451 beta PV3E prokMSA_id:021194 AF134459 beta LV3F prokMSA_id:032759 AF134464 beta LV1T prokMSA_id:026012 AF134465 beta LV3A prokMSA_id:050827 AF134466 beta LV3 prokMSA_id:044121 AF210051 beta HB3 prokMSA_id:072265 AF266808 beta clone 7.15PCR prokMSA_id:021813 AF338211 Nitrosomonas sp. WH-2 prokMSA_id:047242 AF353155 Nitrosomonas sp. G1 prokMSA_id:046231 AF353160 Nitrosomonas europaea prokMSA_id:044831 AF353161 Nitrosomonas sp. CNS326 prokMSA_id:022792 AF353164 Nitrosomonas sp. DYS323 prokMSA_id:050735 AF363292 Nitrosomonas sp. DYS317 prokMSA_id:017110 AF386748 Nitrosomonas sp. R3c12 prokMSA_id:032428 AF386749 Nitrosomonas sp. R5c47 prokMSA_id:038270 AF386750 Nitrosomonas sp. R5c88 prokMSA_id:067664 AF490626 Nitrosomonas sp. clone s1-1 prokMSA_id:006641 AJ005546 Nitrosomonas sp. str. F5. prokMSA_id:030994 AJ011920 Nitrosomonas sp. isolate F6 prokMSA_id:006650 AJ224941 Nitrosomonas sp. str. Koll-21. prokMSA_id:048850 AJ275892 Nitrosomonas SM-50 prokMSA_id:033364 AJ298739 Nitrosomonas eutropha isolate Nm57 prokMSA_id:018945 AJ318197 beta clone BIvii9 prokMSA_id:067555 AJ441274 ammonia-oxidizing isolate F38 prokMSA_id:067547 AJ441282 ammonia-oxidizing isolate F11 prokMSA_id:067541 AJ441285 ammonia-oxidizing isolate F14 prokMSA_id:033788 AY036898 Nitrosomonas sp. IWT202 prokMSA_id:069328 AY123795 Nitrosomonas eutropha prokMSA_id:082338 AY135356 Ammonia-oxidizing NS500-9 prokMSA_id:082677 BX321856 Nitrosomonas europaea ATCC 19718 complete genome; segment 1/10 2.28.2.4.6.014 OTU 1 seq prokMSA_id:027293 AF363293 Nitrosomonas sp. IWT514 2.28.2.4.6.015 OTU 1 seq prokMSA_id:058592 AB080215 rumen clone:RE6 2.28.2.4.6.016 OTU 1 seq prokMSA_id:071516 AF266806 beta clone 7.18.6 2.28.2.4.6.017 OTU 1 seq prokMSA_id:040156 AF363289 Nitrosomonas sp. K1 2.28.2.4.6.018 OTU 1 seq prokMSA_id:074794 AY123792 Nitrosomonas sp. Nm148 2.28.2.4.6.019 OTU 1 seq prokMSA_id:078397 AY186222 clone AZP2-8 2.28.2.4.6.999 poor quality 123 seqs prokMSA_id:092604 AB103544 ammonia-oxidizing cds clone:GC9-01 prokMSA_id:092841 AB103545 ammonia-oxidizing cds clone:GC9-03 prokMSA_id:092706 AB103546 ammonia-oxidizing cds clone:GC9-04 prokMSA_id:092800 AB103549 ammonia-oxidizing cds clone:GC9-07 prokMSA_id:092148 AB103550 ammonia-oxidizing cds clone:GC9-08 prokMSA_id:092685 AB103551 ammonia-oxidizing cds clone:GC9-10 prokMSA_id:092404 AB103552 ammonia-oxidizing cds clone:GC9-11 prokMSA_id:092767 AB103553 ammonia-oxidizing cds clone:GC9-12 prokMSA_id:092032 AB103554 ammonia-oxidizing cds clone:GC9-13 prokMSA_id:092444 AB103556 ammonia-oxidizing cds clone:GC9-15 prokMSA_id:028229 AF063627 beta clone 400 AGG 7 prokMSA_id:072070 AF063628 beta clone 400 AGG 55 prokMSA_id:018395 AF063629 beta clone 400 AGG 67 prokMSA_id:046948 AF063630 beta clone 400 AGG 68 prokMSA_id:050474 AF063631 beta clone 400 AGG 69 prokMSA_id:038191 AF134445 beta PV2B prokMSA_id:039880 AF134446 beta PV3M prokMSA_id:032479 AF134447 beta PV2O prokMSA_id:037171 AF134448 beta PV2P prokMSA_id:040340 AF134450 beta PV3I prokMSA_id:020415 AF134452 beta PV3L prokMSA_id:026570 AF134453 beta PV3J prokMSA_id:030595 AF134454 beta PV3H prokMSA_id:016476 AF134455 beta PV3G prokMSA_id:039343 AF134456 beta PV3K prokMSA_id:035448 AF134457 beta LV3M prokMSA_id:039030 AF134458 beta LV3L prokMSA_id:020636 AF134460 beta LV1A prokMSA_id:043912 AF134461 beta LV3I prokMSA_id:017466 AF134462 beta LV1S prokMSA_id:046788 AF134463 beta LV3K prokMSA_id:026933 AF134467 beta LV3J prokMSA_id:049630 AF134468 beta LV3C prokMSA_id:049108 AF134469 beta LV1C prokMSA_id:016339 AF134470 beta LV3H prokMSA_id:022480 AF175629 WJGRT-97 prokMSA_id:038892 AF178104 beta E20_pH4/5/UP prokMSA_id:028943 AF266807 beta clone 7.18.5 prokMSA_id:070188 AF266810 beta clone 4.5PCR prokMSA_id:072085 AF266812 beta clone 4.5A prokMSA_id:048065 AF266813 beta clone 4.5B prokMSA_id:016705 AF266814 beta clone 4.5C prokMSA_id:048172 AF266815 beta clone 4.5D prokMSA_id:038594 AF266816 beta clone 4.5E prokMSA_id:040606 AF266818 beta clone 4.18B prokMSA_id:072068 AF266819 beta clone 4.18C prokMSA_id:025546 AF266820 beta clone 4.18D prokMSA_id:025202 AF266821 beta clone 4.18F prokMSA_id:039723 AF266822 beta clone 4.18G prokMSA_id:023679 AF266823 beta clone 4.18H prokMSA_id:047504 AF266824 beta clone 4.18I prokMSA_id:029106 AF266825 beta clone 4.18J prokMSA_id:029498 AF266826 beta clone 7.15A prokMSA_id:027523 AF266827 beta clone 7.15B prokMSA_id:050404 AF266828 beta clone 7.15C prokMSA_id:071910 AF266829 beta clone 7.15D prokMSA_id:032403 AF266830 beta clone 7.15E prokMSA_id:051972 AF266831 beta clone 7.15F prokMSA_id:039486 AF266832 beta clone 7.15G prokMSA_id:037825 AF266833 beta clone 7.15H prokMSA_id:028738 AF266834 beta clone 7.15I prokMSA_id:039447 AF266835 beta clone 7.15J prokMSA_id:030889 AF266836 beta clone 4.8A prokMSA_id:024799 AF266837 beta clone 7.18B prokMSA_id:026939 AF266838 beta clone 4.8B prokMSA_id:044154 AF266839 beta clone 7.18D prokMSA_id:050699 AF266840 beta clone 4.8C prokMSA_id:049148 AF266841 beta clone 7.18E prokMSA_id:073081 AF266842 beta clone 4.8E prokMSA_id:048056 AF266843 beta clone 7.18F prokMSA_id:023005 AF266844 beta clone 7.18G prokMSA_id:044834 AF266845 beta clone 7.18H prokMSA_id:027209 AF353283 Tui1-6 prokMSA_id:067660 AF490627 Nitrosomonas sp. clone -jia1 prokMSA_id:061801 AF510862 ammonia-oxidizing clone SP4 prokMSA_id:056164 AF510864 ammonia-oxidizing clone SP6 prokMSA_id:061791 AF510865 ammonia-oxidizing clone SP13 prokMSA_id:055482 AF525950 clone AOB1 prokMSA_id:062915 AF525951 clone AOB2 prokMSA_id:062914 AF525952 clone AOB3 prokMSA_id:062913 AF525953 clone AOB4 prokMSA_id:062911 AF525954 clone AOB5 prokMSA_id:055954 AF525955 clone AOB6 prokMSA_id:077383 AF527013 Nitrosomonas sp. 9BAF prokMSA_id:077540 AF527018 Nitrosomonas sp. 25Ft prokMSA_id:077343 AF527019 Nitrosomonas sp. 36Fb prokMSA_id:077418 AF527020 Nitrosomonas sp. 45BAF prokMSA_id:006644 AJ224410 Nitrosomonas sp. prokMSA_id:033707 AJ245759 Nitrosomonas europaea DGGE bandNeur prokMSA_id:031683 AJ275891 Nitrosomonas SM-59 prokMSA_id:078331 AJ307985 Nitrosomonas mRNA isolate DGGE band MC7.1 prokMSA_id:022315 AJ311607 beta DGGE band ADS-1 prokMSA_id:042555 AJ311608 beta DGGE band ADS-2 prokMSA_id:067562 AJ441259 ammonia-oxidizing isolate L32 prokMSA_id:067560 AJ441260 ammonia-oxidizing isolate L33 prokMSA_id:067558 AJ441261 ammonia-oxidizing isolate L11 prokMSA_id:067557 AJ441262 ammonia-oxidizing isolate L12 prokMSA_id:067559 AJ441263 ammonia-oxidizing isolate L34 prokMSA_id:056601 AJ441264 ammonia-oxidizing isolate L35 prokMSA_id:067552 AJ441271 ammonia-oxidizing isolate F35 prokMSA_id:067554 AJ441272 ammonia-oxidizing isolate F36 prokMSA_id:067550 AJ441278 ammonia-oxidizing isolate L14 prokMSA_id:067545 AJ441280 ammonia-oxidizing isolate L16 prokMSA_id:067548 AJ441281 ammonia-oxidizing isolate L17 prokMSA_id:067546 AJ441283 ammonia-oxidizing isolate F12 prokMSA_id:067540 AJ441284 ammonia-oxidizing isolate F13 prokMSA_id:078402 AJ508178 clone J3_3 prokMSA_id:077889 AJ508180 clone J3_5 prokMSA_id:077842 AJ508181 clone J3_13 prokMSA_id:098724 AJ555428 clone BC01 prokMSA_id:097892 AJ555431 clone BC04 prokMSA_id:061182 AY080920 clone UBP13CH1 prokMSA_id:094466 AY369157 clone T-OTU1 prokMSA_id:094607 AY369160 clone T-OTU4 prokMSA_id:094440 AY369165 clone T-OTU9 prokMSA_id:006652 M96399 Nitrosomonas europaea str. C-31 ; Nm50. prokMSA_id:006653 M96402 Nitrosomonas eutropha str. C-91; Nm57. prokMSA_id:006658 M96403 Nitrosococcus mobilis str. Nc2. prokMSA_id:006640 NONE Nitrosomonas europaea. prokMSA_id:006655 Z46927 Nitrosomonas europaea ATCC 25978 . prokMSA_id:006654 Z46928 Nitrosomonas eutropha. prokMSA_id:006656 Z46987 Nitrosomonas halophila str. Nm1. prokMSA_id:006657 Z46988 Nitrosomonas halophila str. Nm1. 2.28.2.4.7 NMN.MARINA_SUBGROUP 44 seqs 2.28.2.4.7.001 OTU 1 seq prokMSA_id:006662 Z46991 Nitrosomonas marina str. Nm22. 2.28.2.4.7.005 OTU 4 seqs prokMSA_id:019771 AF386751 Nitrosomonas sp. R7c155 prokMSA_id:035222 AF386752 Nitrosomonas sp. R7c131 prokMSA_id:037793 AF386753 Nitrosomonas sp. R7c140 prokMSA_id:028030 AF386757 Nitrosomonas sp. R7c187 2.28.2.4.7.006 OTU 1 seq prokMSA_id:020247 AJ298738 Nitrosomonas cryotolerans isolate Nm55 2.28.2.4.7.008 OTU 17 seqs prokMSA_id:016711 AF272418 Nitrosomonas marina prokMSA_id:027445 AF272420 Nitrosomonas aestuarii prokMSA_id:017356 AF272424 Nitrosomonas sp. NM 51 prokMSA_id:037112 AF338200 Marine C-113 prokMSA_id:071879 AF338201 Marine 122 prokMSA_id:044258 AF338203 Marine C-45 prokMSA_id:027335 AF338205 Marine NH4W prokMSA_id:022070 AF338206 Marine N03W prokMSA_id:071330 AF338210 Marine URW prokMSA_id:046778 AF386746 Nitrosomonas sp. BF16c57 prokMSA_id:044323 AJ298734 Nitrosomonas aestuarii isolate Nm36 prokMSA_id:052630 AJ298737 Nitrosomonas sp. Nm51 isolate Nm51 prokMSA_id:078356 AY186208 clone HL2 prokMSA_id:077981 AY186210 clone HL8 prokMSA_id:078400 AY186212 clone AZP4 prokMSA_id:077577 AY186215 clone AZP11 prokMSA_id:006661 M96400 Nitrosomonas marina str. C-56; Nm63. 2.28.2.4.7.009 OTU 1 seq prokMSA_id:025660 AY048936 DW_NsoE8-7 2.28.2.4.7.010 OTU 3 seqs prokMSA_id:042181 AF338207 Estuarine TA 921-i-NH4 prokMSA_id:077592 AY186211 clone AZP2 prokMSA_id:078200 AY186213 clone AZP6 2.28.2.4.7.999 poor quality 17 seqs prokMSA_id:070605 AF489681 clone K_1 prokMSA_id:070051 AF489683 clone K_3 prokMSA_id:070905 AF489685 clone K_5 prokMSA_id:077344 AF527017 Nitrosomonas sp. 17Ft prokMSA_id:022314 AJ245758 Nitrosomonas DGGE band Nm22 prokMSA_id:044042 AJ299052 beta Ba10-2 prokMSA_id:072531 AJ316211 beta DGGE Band 104 prokMSA_id:006663 U09542 clone AEM1. prokMSA_id:006664 U09543 clone AEM2. prokMSA_id:006667 Z46926 Nitrosomonas oligotropha. prokMSA_id:006666 Z46929 Nitrosomonas sp. str. Nm84. prokMSA_id:006668 Z46932 Nitrosomonas sp. str. Nm86. prokMSA_id:006665 Z46984 Nitrosomonas cryotolerans str. Nm55. prokMSA_id:006659 Z46985 Nitrosomonas aestuarii str. Nm36. prokMSA_id:006660 Z46990 Nitrosomonas marina str. Nm22. prokMSA_id:006669 Z46993 Nitrosomonas ureae str. Nm10. prokMSA_id:006670 Z46994 Nitrosomonas ureae str. Nm10. 2.28.2.5 AZOARCUS_GROUP 804 seqs 2.28.2.5.1 AZC.SP_STR_6A3 1 seq 2.28.2.5.1.999 poor quality 1 seq prokMSA_id:006671 X85435 Azoarcus sp. str. 6a3. 2.28.2.5.2 HGH.THERMOLUTEOLUS_SUBGROUP 117 seqs 2.28.2.5.2.002 OTU 3 seqs prokMSA_id:006678 AB009828 Hydrogenophilus thermoluteolus str. TH-1. prokMSA_id:006684 AB009829 Hydrogenophilus thermoluteolus str. TH-4. prokMSA_id:098287 AY225605 Hydrogenophilus sp. 2.28.2.5.2.003 OTU 8 seqs prokMSA_id:006679 AF026979 clone OPB30. prokMSA_id:006680 AF026980 clone OPS63. prokMSA_id:006682 AF026982 clone OPS130. prokMSA_id:034315 AF445689 beta clone SM1E12 prokMSA_id:041556 AF445741 beta clone SM2G09 prokMSA_id:087756 AY293415 beta clone Lig060299-10.2 prokMSA_id:087075 AY293419 beta clone Lig060299-10.18 prokMSA_id:087338 AY293420 beta clone Lig060299-11.13 2.28.2.5.2.004 OTU 8 seqs prokMSA_id:006673 AF011346 Azoarcus sp. str. S5b2. prokMSA_id:006674 AF011348 Azoarcus BS1-14 str. BS1-14. prokMSA_id:006676 AF050526 clone WCHA1-52. prokMSA_id:044337 AF158713 PM4-2 small subunit prokMSA_id:030171 AF158714 PM5 small subunit prokMSA_id:037979 AF158715 PM8-1 small subunit prokMSA_id:026304 AF158720 A42 small subunit prokMSA_id:032718 AF158721 A49 small subunit 2.28.2.5.2.005 OTU 1 seq prokMSA_id:006675 AF011349 Azoarcus BS20-3 str. BS20-3. 2.28.2.5.2.006 OTU 1 seq prokMSA_id:019374 AJ289984 FukuN108 2.28.2.5.2.007 OTU 1 seq prokMSA_id:024966 AF424071 gamma MERTZ_2CM_60 2.28.2.5.2.008 OTU 1 seq prokMSA_id:069403 AF236014 Beta F06002 2.28.2.5.2.009 OTU 1 seq prokMSA_id:026330 AF441892 beta clone CD11B1 2.28.2.5.2.010 OTU 1 seq prokMSA_id:029097 AF280832 tbr4-23 2.28.2.5.2.012 OTU 15 seqs prokMSA_id:006685 AB015328 str. HMD444. prokMSA_id:070430 AF280821 tbr1-3 prokMSA_id:070880 AF280822 tbr1-4 prokMSA_id:029990 AF280826 tbr1-14 prokMSA_id:050274 AF280827 tbr4-2 prokMSA_id:070657 AF280828 tbr4-5 prokMSA_id:073564 AF280833 tbr4-24 prokMSA_id:072616 AF280835 tbr4-67 prokMSA_id:045235 AF280842 mle1-3 prokMSA_id:021915 AF280851 mle1-14 prokMSA_id:072763 AF280860 mle1-32 prokMSA_id:072026 AF280864 mle1-43 prokMSA_id:079811 AJ504663 Tepidiphilus margaritifer strain N2-214T prokMSA_id:084214 AY219713 Petrobacter succinimandens BON4 prokMSA_id:086365 AY219714 Petrobacter succinimandens BON2 2.28.2.5.2.013 OTU 1 seq prokMSA_id:037585 AF177427 Candidatus Procabacter acanthamoebae 2.28.2.5.2.014 OTU 2 seqs prokMSA_id:040122 AF402975 Hydrogenophilus sp. clone prokMSA_id:085885 AY222297 beta clone ST01-SN1D 2.28.2.5.2.015 OTU 1 seq prokMSA_id:073404 AF280834 tbr4-27 2.28.2.5.2.016 OTU 1 seq prokMSA_id:051448 AF352386 Candidatus Procabacter sp. TUMSJ-341 2.28.2.5.2.017 OTU 1 seq prokMSA_id:051702 AJ277439 Hydrogenophilus sp. Mar3 isolate Mar3 2.28.2.5.2.018 OTU 1 seq prokMSA_id:070655 AJ131694 Hydrogenothermophilus hirschii strain yel5a 2.28.2.5.2.019 OTU 1 seq prokMSA_id:072619 AF280830 tbr4-10 2.28.2.5.2.020 OTU 1 seq prokMSA_id:077870 AB089100 beta clone:Rs-A34 2.28.2.5.2.021 OTU 1 seq prokMSA_id:095620 AY381296 clone Lgja-50 2.28.2.5.2.999 poor quality 67 seqs prokMSA_id:020012 AB079470 clone:TOYO-9-C prokMSA_id:022154 AB079474 clone:TOYO-13-Bm prokMSA_id:083733 AB107856 beta clone:i prokMSA_id:084543 AB107857 beta clone:j prokMSA_id:006681 AF026981 clone OPS83. prokMSA_id:006683 AF026983 clone OPS140. prokMSA_id:069832 AF059761 HdEPI3 prokMSA_id:022933 AF158718 A36 small subunit prokMSA_id:021568 AF353292 Tui2-23 prokMSA_id:049934 AF441888 beta clone CD11C1 prokMSA_id:019342 AF441890 beta clone CD11C2 prokMSA_id:049281 AF441893 beta clone CD11B3 prokMSA_id:036373 AF441896 beta clone CD11B4 prokMSA_id:030317 AF441901 beta clone CD11A3 prokMSA_id:049709 AF441902 beta clone CD11A2 prokMSA_id:026041 AF441903 beta clone CD11A4 prokMSA_id:017483 AF441907 beta clone CD11G12 prokMSA_id:045069 AF441909 beta clone CD11G1 prokMSA_id:052527 AF441910 beta clone CD11G3 prokMSA_id:022068 AF441917 beta clone CD11F3 prokMSA_id:029210 AF441923 beta clone CD11E2 prokMSA_id:019653 AF441924 beta clone CD11E5 prokMSA_id:040568 AF441926 beta clone CD11E7 prokMSA_id:050662 AF441929 beta clone CD11D8 prokMSA_id:030630 AF441930 beta clone CD11D1 prokMSA_id:016744 AF441931 beta clone CD11D3 prokMSA_id:044485 AF441934 beta clone CD11D4 prokMSA_id:020743 AF446318 beta FL04G09 prokMSA_id:059142 AF542380 beta clone CD20G05 prokMSA_id:059143 AF542381 beta clone CD20H04 prokMSA_id:073099 AJ303337 SCBP-A36 prokMSA_id:028204 AJ404546 Hydrogenophilus HT prokMSA_id:069606 AY145682 beta TS1G7 prokMSA_id:087549 AY293431 beta clone FL02A10 prokMSA_id:086735 AY293432 beta clone FL02C11 prokMSA_id:087683 AY293436 beta clone FL02E08 prokMSA_id:087538 AY293438 beta clone FL02F09 prokMSA_id:087900 AY293439 beta clone FL02G06 prokMSA_id:087556 AY293441 beta clone FL03A04 prokMSA_id:087378 AY293443 beta clone FL04A10 prokMSA_id:087557 AY293445 beta clone FL04D08 prokMSA_id:087513 AY293446 beta clone FL04D10 prokMSA_id:086918 AY293450 beta clone FL04G11 prokMSA_id:087981 AY293452 beta clone FL04H09 prokMSA_id:087492 AY293460 beta clone FL05E02 prokMSA_id:087927 AY293463 beta clone FL05E08 prokMSA_id:087016 AY293469 beta clone FL05H09 prokMSA_id:087133 AY293470 beta clone FL05H10 prokMSA_id:087669 AY293471 beta clone FL05H11 prokMSA_id:087029 AY293472 beta clone FL06E01 prokMSA_id:087530 AY293476 beta clone FL06E10 prokMSA_id:087978 AY293479 beta clone FL06H05 prokMSA_id:087744 AY293501 beta clone FL08C11 prokMSA_id:088053 AY293508 beta clone FL10G11 prokMSA_id:087664 AY293512 beta clone FL12G10 prokMSA_id:087149 AY293513 beta clone FL12H02 prokMSA_id:087113 AY293522 beta clone FL13D08 prokMSA_id:087797 AY293533 beta clone FL13H09 prokMSA_id:087696 AY293534 beta clone FL13H10 prokMSA_id:087189 AY293535 beta clone FL14A02 prokMSA_id:087033 AY293547 beta clone FL14E05 prokMSA_id:087643 AY293549 beta clone FL14E10 prokMSA_id:087076 AY293552 beta clone FL14F02 prokMSA_id:089585 AY323191 beta clone A114-5 prokMSA_id:006672 L15532 Azoarcus sp. str. S5b2. prokMSA_id:006677 X52550 Octopus Spring microbial mat from Yellowstone NP clone G. prokMSA_id:006686 Z69286 clone JA22hi. 2.28.2.5.3 DCL.AGITATUS_SUBGROUP 158 seqs 2.28.2.5.3.008 OTU 40 seqs prokMSA_id:006696 AF047462 Dechlorimonas agitatus str. CKB . prokMSA_id:006700 AF170354 Dechlorimonas CL str. CL. prokMSA_id:006701 AF170355 Dechlorimonas NM str. NM. prokMSA_id:006702 AF170356 Dechlorimonas SIUL str. SIUL. prokMSA_id:006703 AF170357 Dechlorimonas MissR str. MissR. prokMSA_id:050481 AF204246 beta SBRH147 prokMSA_id:021353 AF288776 Dechloromonas sp. CCO prokMSA_id:025359 AF323489 Dechloromonas sp. JM prokMSA_id:066609 AF331976 Beta OcN1 prokMSA_id:044067 AF422660 clone d075 prokMSA_id:041487 AF444791 Perchlorate-reducing MLC33 prokMSA_id:056561 AF450470 beta clone Orbal D44 prokMSA_id:065354 AF450475 beta clone Orbal D52 prokMSA_id:072807 AF479766 Dechloromonas sp. HZ ; -23S intergenic spacer complete and 23S prokMSA_id:067300 AF495386 clone F10.16 prokMSA_id:062388 AF529131 beta clone FTLpost11 prokMSA_id:061824 AF529339 beta clone CLi61 prokMSA_id:061806 AF529359 Beta AC1 prokMSA_id:075126 AJ318917 Dechlorimonas sp. SIUL strain ED1 prokMSA_id:039167 AJ422172 beta clone Spb272 prokMSA_id:029770 AY032610 Dechloromonas sp. RCB prokMSA_id:025770 AY032611 Dechloromonas sp. JJ prokMSA_id:065410 AY064187 beta clone R51 prokMSA_id:065409 AY064188 beta clone R52 prokMSA_id:065403 AY064189 beta clone R55 prokMSA_id:065404 AY064190 beta clone R64 prokMSA_id:065405 AY064191 beta clone R70 prokMSA_id:065402 AY064192 beta clone R74 prokMSA_id:060760 AY126452 Dechloromonas sp. PC1 prokMSA_id:059933 AY133066 Rhodocyclaceae clone ccs203 prokMSA_id:059931 AY133067 Rhodocyclaceae clone ccs2105 prokMSA_id:059918 AY133075 Rhodocyclaceae clone ccs296 prokMSA_id:059921 AY133076 Rhodocyclaceae clone ccs272 prokMSA_id:059909 AY133087 beta clone ccslm218 prokMSA_id:081981 AY192045 beta clone G84-GM4R prokMSA_id:083041 AY265872 Perchlorate-reducing RC2 prokMSA_id:083019 AY265876 Perchlorate-reducing RC1 prokMSA_id:082517 AY265878 Perchlorate-reducing PMC prokMSA_id:083320 AY265879 Perchlorate-reducing EAB2 prokMSA_id:006706 Y17060 Ferribacterium limneticum str. cda-1. 2.28.2.5.3.009 OTU 1 seq prokMSA_id:006699 AJ009452 clone SJA-10. 2.28.2.5.3.010 OTU 1 seq prokMSA_id:016839 AF351237 beta clone 8-11 2.28.2.5.3.011 OTU 1 seq prokMSA_id:017553 AF280846 mle1-7 2.28.2.5.3.013 OTU 13 seqs prokMSA_id:021832 AF414580 clone P3OB-49 prokMSA_id:006704 AJ224617 str. TBW3. prokMSA_id:006705 AJ224618 str. 5Z-C1. prokMSA_id:023915 AJ243144 Thiobacillus denitrificans strain NCIMB 9548 prokMSA_id:017101 AJ295643 Thiobacillus sp. KF-Gitt2-40 prokMSA_id:018168 AJ307935 mRNA clone sipK89 prokMSA_id:067835 AY082471 Thiobacillus sp. clone 44a-B2-21 prokMSA_id:059895 AY133101 beta clone ccspost2132 prokMSA_id:059891 AY133102 beta clone ccspost2141 prokMSA_id:059893 AY133108 beta clone ccspost271 prokMSA_id:095860 AY424814 clone mv12.2 prokMSA_id:097956 AY424817 clone mv12.5 prokMSA_id:070617 L20810 sp. group I from Stripa mine fragment 2.28.2.5.3.014 OTU 1 seq prokMSA_id:022313 AF351569 beta clone NJ1 2.28.2.5.3.015 OTU 1 seq prokMSA_id:029482 AY007722 Cardococcus australiensis 2.28.2.5.3.016 OTU 1 seq prokMSA_id:030433 AF288775 Dechloromonas sp. CL24 2.28.2.5.3.017 OTU 1 seq prokMSA_id:030998 AF422671 clone d122 2.28.2.5.3.018 OTU 2 seqs prokMSA_id:050714 AF288771 Dechloromonas sp. FL2 prokMSA_id:034132 AF288772 Dechloromonas sp. FL8 2.28.2.5.3.019 OTU 1 seq prokMSA_id:034983 AF351229 beta clone 4-21 2.28.2.5.3.020 OTU 1 seq prokMSA_id:056611 AF450473 beta clone Orbal D50 2.28.2.5.3.021 OTU 1 seq prokMSA_id:043118 AF245350 SA35 2.28.2.5.3.022 OTU 9 seqs prokMSA_id:065373 AF450455 beta clone Orbal D1 prokMSA_id:056550 AF450456 beta clone Orbal D2 prokMSA_id:065370 AF450457 beta clone Orbal D3 prokMSA_id:065371 AF450458 beta clone Orbal D4 prokMSA_id:065369 AF450460 beta clone Orbal D6 prokMSA_id:065368 AF450462 beta clone Orbal D10 prokMSA_id:065366 AF450464 beta clone Orbal D21 prokMSA_id:065364 AF450467 beta clone Orbal D39 prokMSA_id:065359 AF450472 beta clone Orbal D46 2.28.2.5.3.023 OTU 1 seq prokMSA_id:071678 AF280861 mle1-33 2.28.2.5.3.024 OTU 1 seq prokMSA_id:055353 AF450461 beta clone Orbal D7 2.28.2.5.3.025 OTU 1 seq prokMSA_id:059932 AY133064 beta clone ccs265 2.28.2.5.3.026 OTU 1 seq prokMSA_id:060588 AF407711 clone G94 2.28.2.5.3.027 OTU 1 seq prokMSA_id:060817 AY118150 beta clone Cart-N1 2.28.2.5.3.028 OTU 1 seq prokMSA_id:060852 AY135925 clone SG2-128 2.28.2.5.3.029 OTU 1 seq prokMSA_id:062033 AF523323 clone P4-51 2.28.2.5.3.030 OTU 1 seq prokMSA_id:062036 AF523324 clone P4-4 2.28.2.5.3.031 OTU 1 seq prokMSA_id:067259 AF495429 clone F13.33 2.28.2.5.3.032 OTU 1 seq prokMSA_id:072646 AF407385 clone RB7C6 2.28.2.5.3.033 OTU 1 seq prokMSA_id:076489 AY159173 RO_clone_14C 2.28.2.5.3.034 OTU 1 seq prokMSA_id:077627 AY171616 Dechlorosoma sp. AH 2.28.2.5.3.035 OTU 1 seq prokMSA_id:085367 AY265877 Perchlorate-reducing EAB1 2.28.2.5.3.036 OTU 1 seq prokMSA_id:085562 AY274133 clone D125 2.28.2.5.3.037 OTU 1 seq prokMSA_id:091025 AY340837 clone SR_FBR_L14 2.28.2.5.3.038 OTU 1 seq prokMSA_id:096246 AY424815 clone mv12.3 2.28.2.5.3.039 OTU 1 seq prokMSA_id:096448 AY160865 clone COB P5-5 2.28.2.5.3.999 poor quality 67 seqs prokMSA_id:086116 AB107085 beta clone:b0w prokMSA_id:084455 AB107087 beta clone:a2w-3 prokMSA_id:086056 AB107097 beta clone:f6w-3 prokMSA_id:085818 AB107862 beta clone:p prokMSA_id:085016 AB107863 beta clone:q prokMSA_id:084449 AB107865 beta clone:s prokMSA_id:083166 AB107866 beta clone:u prokMSA_id:085701 AB107867 beta clone:v prokMSA_id:006697 AF011350 Azoarcus BS5-8 str. BS5-8. prokMSA_id:006693 AF035048 unnamed organism. prokMSA_id:006692 AF035051 unnamed organism. prokMSA_id:038682 AF245319 SA4 prokMSA_id:054663 AF245326 SA11 prokMSA_id:045124 AF245333 SA18 prokMSA_id:045335 AF245346 SA31 prokMSA_id:033503 AF281095 sp. sbr-gs5 prokMSA_id:025651 AF281105 sp. sbr-gs15 prokMSA_id:072358 AF320974 Lake Michigan sediment LMBA38 prokMSA_id:047427 AF367235 clone PDS5 prokMSA_id:043470 AF367240 clone PNS5 prokMSA_id:021900 AF390920 clone ICBAA12 prokMSA_id:027586 AF414582 clone P3OB-54 prokMSA_id:029346 AF429211 clone CR99-2-25 prokMSA_id:020559 AF440284 clone PO4 prokMSA_id:074462 AF444789 Perchlorate-reducing Rick74 prokMSA_id:073305 AF444790 Perchlorate-reducing Elsa1 prokMSA_id:057478 AF447801 beta clone S30 prokMSA_id:077407 AF477804 beta clone AGCM58 prokMSA_id:022525 AF478362 prokMSA_id:042052 AF478363 prokMSA_id:067257 AF495431 clone F13.35 prokMSA_id:077505 AF527026 beta 43Ft prokMSA_id:027108 AJ232814 clone LBS28 prokMSA_id:024589 AJ238205 beta -8 prokMSA_id:038167 AJ278523 5-3 prokMSA_id:062599 AJ504518 isolate P1CN57 prokMSA_id:057036 AJ518511 clone Qui2P2-58 prokMSA_id:056551 AJ518514 clone Qui2P2-70 prokMSA_id:037822 AY048196 Dechloromonas sp. clone PR-VFA-1 and genes prokMSA_id:086267 AY084086 Beta JDS5 prokMSA_id:086107 AY084087 Beta JDS6 prokMSA_id:058022 AY150278 Dechloromonas sp. DGGE gel band MG7-JLMBR prokMSA_id:075181 AY157091 beta isolate WB-67 prokMSA_id:076477 AY159182 RO_clone_11B prokMSA_id:080411 AY193052 clone LLB7 prokMSA_id:082611 AY253432 clone AC7 prokMSA_id:085560 AY261822 beta clone OTU ADB-2 prokMSA_id:084136 AY265866 Perchlorate-reducing PR prokMSA_id:084638 AY265867 Perchlorate-reducing ABL2 prokMSA_id:083879 AY265871 Perchlorate-reducing EAB3 prokMSA_id:082923 AY265880 Perchlorate-reducing INS prokMSA_id:088597 AY274182 beta SSCP band S13 prokMSA_id:089245 AY274195 beta DGGE band D11 prokMSA_id:091189 AY340847 isolate DGGE fragment SR_FBR_E6 prokMSA_id:093496 AY361938 clone P8-GEO-1 prokMSA_id:006708 X84469 str. SBR1025. prokMSA_id:006707 X84592 str. SBR2058. prokMSA_id:006695 X91174 clone G3. prokMSA_id:006694 X91176 clone G5. prokMSA_id:006688 X91182 clone G10. prokMSA_id:006689 X91185 clone G13. prokMSA_id:006690 X91188 clone G16. prokMSA_id:006691 X91271 clone G19. prokMSA_id:036322 Y11634 clone 64 prokMSA_id:006687 Z69272 clone JN7b. prokMSA_id:071215 Z69277 sp. clone group JN12d prokMSA_id:006698 Z93981 clone T16. 2.28.2.5.4 ENVIRONMENTAL_CLONE_G6 1 seq 2.28.2.5.4.999 poor quality 1 seq prokMSA_id:006709 X91177 clone G6. 2.28.2.5.5 RCY.TENUIS_SUBGROUP 168 seqs 2.28.2.5.5.002 OTU 20 seqs prokMSA_id:019736 AB074688 Beta D-St0-8B prokMSA_id:019759 AB074689 Beta D-St1-10 prokMSA_id:006714 AF011347 Azoarcus 6a3 str. 6a3. prokMSA_id:006715 AF011351 Azoarcus BS2-3 str. BS2-3. prokMSA_id:006722 AF170348 Dechlorisoma suilla str. PS. prokMSA_id:006723 AF170349 Dechlorisoma SDGM str. SDGM. prokMSA_id:006716 AF170350 Dechlorisoma Iso1 str. Iso1. prokMSA_id:006724 AF170351 Dechlorisoma Iso2 str. Iso2. prokMSA_id:035442 AF323490 Dechlorosoma sp. PDX prokMSA_id:035520 AF323491 Dechlorosoma sp. KJ prokMSA_id:006719 AJ009466 clone SJA-52. prokMSA_id:076735 AJ534659 beta clone S15A-MN34 prokMSA_id:076846 AJ534661 beta clone S15A-MN28 prokMSA_id:077054 AJ534663 beta clone S15A-MN6 prokMSA_id:076627 AJ534664 beta clone S15A-MN2 prokMSA_id:077217 AJ534665 beta clone S15A-MN93 prokMSA_id:094487 AJ583169 beta- clone S15B-MN108 prokMSA_id:095050 AJ583170 beta- clone S15B-MN110 prokMSA_id:060759 AY126453 Dechlorosoma sp. PCC prokMSA_id:059899 AY133096 beta clone ccslm36 2.28.2.5.5.004 OTU 1 seq prokMSA_id:006720 AJ009484 clone SJA-109. 2.28.2.5.5.005 OTU 2 seqs prokMSA_id:006718 D16208 Rhodocyclus tenuis str. 2761 DSM 109 . prokMSA_id:006712 D16210 Rhodocyclus tenuis str. SW18. 2.28.2.5.5.008 OTU 1 seq prokMSA_id:006713 D16209 Rhodocyclus tenuis str. 3760 DSM 110. 2.28.2.5.5.009 OTU 1 seq prokMSA_id:006711 M34132 Rhodocyclus purpureus str. 6770 DSM 168 . 2.28.2.5.5.010 OTU 1 seq prokMSA_id:017475 AY013696 Banisveld landfill BVC47 2.28.2.5.5.011 OTU 1 seq prokMSA_id:018949 AF414585 clone P3OU-26 2.28.2.5.5.016 OTU 1 seq prokMSA_id:059326 AF502244 clone HP1U19 2.28.2.5.5.017 OTU 1 seq prokMSA_id:025562 AF371865 clone p-2552-9F5 2.28.2.5.5.018 OTU 3 seqs prokMSA_id:094145 AB111104 Core-1 prokMSA_id:026639 AF227840 str. 51885 prokMSA_id:038455 AY005031 Beta sp. oral strain A08KA 2.28.2.5.5.019 OTU 1 seq prokMSA_id:026694 AJ289884 Thiobacillus Q strain LMD 81.11 2.28.2.5.5.020 OTU 1 seq prokMSA_id:027267 AF423222 soil clone 1326-2 2.28.2.5.5.021 OTU 2 seqs prokMSA_id:030390 AY062126 beta clone UCT N141 prokMSA_id:065494 AY064177 beta clone UCT N123 2.28.2.5.5.022 OTU 1 seq prokMSA_id:031904 AF351575 beta clone NJ97 2.28.2.5.5.023 OTU 1 seq prokMSA_id:036918 AJ252651 Agricultural soil clone SC-I-71 2.28.2.5.5.024 OTU 1 seq prokMSA_id:041031 AF427953 clone 5D 2.28.2.5.5.027 OTU 1 seq prokMSA_id:044355 AF387301 Iron-oxidizing acidophile m-1 2.28.2.5.5.028 OTU 1 seq prokMSA_id:057489 AF447793 beta clone S7 2.28.2.5.5.029 OTU 1 seq prokMSA_id:050035 AF422586 clone t011 2.28.2.5.5.031 OTU 1 seq prokMSA_id:054073 AB062831 clone:BCf6-08 2.28.2.5.5.032 OTU 1 seq prokMSA_id:061822 AF529340 beta clone CLi64 2.28.2.5.5.033 OTU 1 seq prokMSA_id:064665 AJ316618 Thiobacillus plumbophilus strain DSM 6690 2.28.2.5.5.034 OTU 1 seq prokMSA_id:065353 AF450477 beta clone Orbal D55 2.28.2.5.5.037 OTU 1 seq prokMSA_id:065365 AF450465 beta clone Orbal D31 2.28.2.5.5.038 OTU 1 seq prokMSA_id:065624 AF507776 soil clone S1189 2.28.2.5.5.039 OTU 1 seq prokMSA_id:066585 AF503539 Beta TW2 2.28.2.5.5.040 OTU 1 seq prokMSA_id:067834 AY082472 beta clone 44a-B2-3 2.28.2.5.5.041 OTU 1 seq prokMSA_id:069019 AF351236 beta clone 8-5 2.28.2.5.5.042 OTU 2 seqs prokMSA_id:069212 AY124797 Dechloromonas sp. LT-1 prokMSA_id:082400 AY192051 beta clone P75-GM4R-t 2.28.2.5.5.043 OTU 1 seq prokMSA_id:070708 AF407205 clone GIF16 2.28.2.5.5.044 OTU 1 seq prokMSA_id:073679 AF281119 sp. sbr-gs29 2.28.2.5.5.045 OTU 1 seq prokMSA_id:074718 AF450476 beta clone Orbal D54 2.28.2.5.5.046 OTU 1 seq prokMSA_id:074988 AJ519624 beta clone Sh765B-TzT-132 2.28.2.5.5.047 OTU 1 seq prokMSA_id:076186 AY154615 earthworm cast clone c263 2.28.2.5.5.048 OTU 1 seq prokMSA_id:078240 AB089103 beta clone:Rs-K54 2.28.2.5.5.049 OTU 1 seq prokMSA_id:080896 AY188298 clone KD2-110 2.28.2.5.5.051 OTU 45 seqs prokMSA_id:006717 AF016690 Propionibacter pelophilus str. asp 66. prokMSA_id:036416 AF204244 beta SBRA220 prokMSA_id:036121 AF204245 beta SBRA245A prokMSA_id:073861 AF204247 beta SBRB34 prokMSA_id:020695 AF204248 beta GCP112 prokMSA_id:045179 AF245349 SA34 prokMSA_id:036331 AF255631 beta clone Ebpr16 prokMSA_id:032087 AF255641 beta clone Ebpr15 prokMSA_id:041872 AF314417 PHOS-HC05 prokMSA_id:065372 AF450459 beta clone Orbal D5 prokMSA_id:065362 AF450466 beta clone Orbal D32 prokMSA_id:065363 AF450468 beta clone Orbal D41 prokMSA_id:065361 AF450469 beta clone Orbal D42 prokMSA_id:065360 AF450471 beta clone Orbal D45 prokMSA_id:065358 AF450474 beta clone Orbal D51 prokMSA_id:059343 AF502224 clone HP1A13 prokMSA_id:055551 AF502225 clone HP1B23 prokMSA_id:059342 AF502226 clone HP1A50 prokMSA_id:059341 AF502227 clone HP1B75 prokMSA_id:059339 AF502228 clone HP1A21 prokMSA_id:059338 AF502229 clone HP1A49 prokMSA_id:059340 AF502230 clone HP1A31 prokMSA_id:059337 AF502231 clone HP1A26 prokMSA_id:059336 AF502232 clone HP1B54 prokMSA_id:059327 AF502241 clone HP1U11 prokMSA_id:059325 AF502242 clone HP1U28 prokMSA_id:006725 AJ224937 Rhodocyclus sp. str. R6. prokMSA_id:042580 AJ307983 Propionivibrio limicola strain GolChi1 T prokMSA_id:052088 AY062125 beta clone UCT N032 prokMSA_id:065493 AY064178 beta clone UCT N161 prokMSA_id:065492 AY064179 beta clone UCT N173 prokMSA_id:065491 AY064180 beta clone UCT NS01 prokMSA_id:065486 AY064181 beta clone UCT NS02 prokMSA_id:055863 AY064182 beta clone UCT NS03 prokMSA_id:065489 AY064183 beta clone UCT NS08 prokMSA_id:065488 AY064184 beta clone UCT NS10 prokMSA_id:065490 AY064185 beta clone UCT NS12 prokMSA_id:065487 AY064186 beta clone UCT NS16 prokMSA_id:080492 AY161246 clone SSADM_EG9 prokMSA_id:081843 AY214205 clone ZZ15C5 prokMSA_id:088397 AY297809 Beta pACH94 prokMSA_id:088834 AY328764 DSSD66 prokMSA_id:088077 AY328838 Drinking water MB3 prokMSA_id:091157 AY340823 clone SR_FBR_E21 prokMSA_id:006721 Y17601 Propionivibrio dicarboxylicus DSM 5885. 2.28.2.5.5.052 OTU 1 seq prokMSA_id:082353 AY187407 clone SA32 2.28.2.5.5.053 OTU 1 seq prokMSA_id:086656 AY274125 clone D115 2.28.2.5.5.054 OTU 2 seqs prokMSA_id:088728 AY297805 Beta pACH89 prokMSA_id:088575 AY297807 Beta pACH91 2.28.2.5.5.055 OTU 1 seq prokMSA_id:090189 AY328756 DSSD58 2.28.2.5.5.056 OTU 1 seq prokMSA_id:093286 AJ582038 beta clone JG36-GS-54 2.28.2.5.5.057 OTU 1 seq prokMSA_id:093630 AJ582036 beta clone JG36-GS-101 2.28.2.5.5.058 OTU 1 seq prokMSA_id:094470 AJ583171 beta- clone S15B-MN115 2.28.2.5.5.059 OTU 1 seq prokMSA_id:096118 AY381294 clone Lgja-59 2.28.2.5.5.060 OTU 1 seq prokMSA_id:096240 AY381295 clone Lgja-46 2.28.2.5.5.061 OTU 1 seq prokMSA_id:096941 AY424824 clone mv13.3 2.28.2.5.5.999 poor quality 52 seqs prokMSA_id:043332 AB052089 beta- DGGE-band4 prokMSA_id:083193 AB107854 beta clone:g prokMSA_id:090339 AB111836 prokMSA_id:089411 AB111837 prokMSA_id:022328 AF078226 Grassland soil clone saf1_324 prokMSA_id:071986 AF097807 clone 49513 prokMSA_id:049118 AF245327 SA12 prokMSA_id:029241 AF245334 SA19 prokMSA_id:037014 AF245335 SA20 prokMSA_id:041822 AF245337 SA22 prokMSA_id:037918 AF245338 SA23 prokMSA_id:051737 AF245339 SA24 prokMSA_id:031111 AF245341 SA26 prokMSA_id:019227 AF268850 glc7 prokMSA_id:024403 AF281098 sp. sbr-gs8 prokMSA_id:050574 AF281101 sp. sbr-gs11 prokMSA_id:017163 AF281102 sp. sbr-gs12 prokMSA_id:022472 AF281110 sp. sbr-gs20 prokMSA_id:028843 AF390919 clone ICBMD10 prokMSA_id:047368 AF390946 clone TFBMD9 prokMSA_id:029996 AF414586 clone P3OU-53 prokMSA_id:041016 AF427952 clone 2D prokMSA_id:022280 AF429243 clone CR99-2-57 prokMSA_id:076409 AF431239 beta clone C17.16WL prokMSA_id:075564 AF431260 beta clone C31.59SM prokMSA_id:076260 AF431263 beta clone C32.11SM prokMSA_id:068713 AF484048 clone p56 prokMSA_id:055422 AF507533 soil clone S0154 prokMSA_id:065600 AF507797 soil clone S1242 prokMSA_id:039812 AJ225350 Beta species ; clone 41 prokMSA_id:030251 AJ225358 Beta species ; clone 51 prokMSA_id:041755 AJ225382 Beta species ; clone 28 prokMSA_id:028066 AJ231050 beta clone 5 prokMSA_id:035632 AJ231065 beta clone 19 prokMSA_id:019053 AJ231067 beta clone 21 prokMSA_id:032501 AJ287636 beta 101ev prokMSA_id:036296 AJ404645 beta 272-3-1 prokMSA_id:064866 AJ412682 clone 95 prokMSA_id:016427 AJ413604 isolate dtb61 prokMSA_id:056255 AJ504568 isolate P2CN19 prokMSA_id:062535 AJ504597 isolate P2CN56 prokMSA_id:071881 AJ518530 clone Qui2P3-53 prokMSA_id:095769 AJ583806 beta clone DGGE band 18 prokMSA_id:065496 AY064176 beta clone UCT N112 prokMSA_id:084900 AY084085 Beta JDS4 prokMSA_id:074979 AY159194 RO_clone_11 prokMSA_id:092820 AY184381 beta isolate DGGE gel band O4 prokMSA_id:080999 AY193043 clone GalB62 prokMSA_id:006727 X78630 clone SMK107. prokMSA_id:006728 X84493 str. SBR1058. prokMSA_id:006710 X84544 str. SBR1119. prokMSA_id:006726 X84620 str. SBR2090. 2.28.2.5.6 DG.ZOOGLOEOIDES_SUBGROUP_II 82 seqs 2.28.2.5.6.001 OTU 1 seq prokMSA_id:006743 U22534 Zoogloea sp. str. DhA-35. 2.28.2.5.6.003 OTU 1 seq prokMSA_id:006736 AJ003781 clone Dr18. 2.28.2.5.6.008 OTU 1 seq prokMSA_id:017331 AJ421928 beta clone Elb168 2.28.2.5.6.010 OTU 25 seqs prokMSA_id:040129 AF234693 sludge H10 prokMSA_id:019927 AF234697 sludge H22 prokMSA_id:037845 AF234704 sludge H40 prokMSA_id:037405 AF234708 sludge H11 prokMSA_id:045043 AF234722 sludge H27 prokMSA_id:022275 AF234726 sludge A16 prokMSA_id:018572 AF234737 sludge H13 prokMSA_id:025035 AF234738 sludge S21 prokMSA_id:034086 AF314418 PHOS-HC20 prokMSA_id:059335 AF502233 clone HP1A03 prokMSA_id:073258 AF527582 clone LPB19 prokMSA_id:062961 AF527589 clone LPU01 prokMSA_id:062958 AF527592 clone LPU11 prokMSA_id:062956 AF527597 clone LPU33 prokMSA_id:062948 AF527602 clone LPU93 prokMSA_id:006735 AJ009455 clone SJA-21. prokMSA_id:006738 AJ011506 Zoogloea DhA-35 str. DhA-35. prokMSA_id:070483 AJ505851 Zoogloea resiniphila strain PIV-3A2w prokMSA_id:073489 AJ505852 Zoogloea resiniphila strain PIV-3A2y prokMSA_id:072759 AJ505853 Zoogloea resiniphila strain PIV-3C2w prokMSA_id:070359 AJ505854 Zoogloea resiniphila strain PIV-3C2y prokMSA_id:081696 AY187529 clone SD102 prokMSA_id:006731 D14254 Duganella zoogloeoides IAM 12136. prokMSA_id:006732 D14257 Duganella zoogloeoides str. 235 N.C. Dondero ATCC 19324. prokMSA_id:006733 X74913 Duganella zoogloeoides ATCC 19544. 2.28.2.5.6.011 OTU 1 seq prokMSA_id:019867 AF234684 sludge H7 2.28.2.5.6.012 OTU 1 seq prokMSA_id:031480 AF414584 clone P3OB-60 2.28.2.5.6.013 OTU 1 seq prokMSA_id:031530 AY062127 beta clone UCT N117 2.28.2.5.6.014 OTU 1 seq prokMSA_id:034879 AJ318116 beta clone BIfci36 2.28.2.5.6.015 OTU 1 seq prokMSA_id:065702 AF507678 soil clone C1235 2.28.2.5.6.016 OTU 1 seq prokMSA_id:066107 AB074943 beta clone:KU34 2.28.2.5.6.017 OTU 7 seqs prokMSA_id:088105 AY328564 HOClCi15 prokMSA_id:089867 AY328575 HOClCi26 prokMSA_id:089820 AY328580 HOClCi31 prokMSA_id:088528 AY328593 HOClCi44 prokMSA_id:090533 AY328607 HOClCi58 prokMSA_id:090511 AY328618 HOClCi69 prokMSA_id:090498 AY328630 DSSF7 2.28.2.5.6.018 OTU 1 seq prokMSA_id:096790 AY381284 clone Lgja-37 2.28.2.5.6.999 poor quality 40 seqs prokMSA_id:050954 AB010604 clone ASB002 prokMSA_id:050725 AB010611 clone ASB026 prokMSA_id:036610 AB010613 clone ASB028 prokMSA_id:041380 AB010614 clone ASB033 prokMSA_id:006737 AF005628 Thiobacillus thioparus str. LV43. prokMSA_id:026118 AF175595 WJGRT-30 prokMSA_id:039548 AF281100 sp. sbr-gs10 prokMSA_id:022374 AF281104 sp. sbr-gs14 prokMSA_id:021307 AF281114 sp. sbr-gs24 prokMSA_id:019637 AF281115 sp. sbr-gs25 prokMSA_id:020735 AF281116 sp. sbr-gs26 prokMSA_id:037133 AF320568 Rhodocyclus group prokMSA_id:035002 AF337867 gold mine D prokMSA_id:021051 AF367230 clone PDS1 prokMSA_id:035629 AF389444 clone SRS62DBA21 prokMSA_id:032529 AF440291 clone PO11 prokMSA_id:056006 AF447802 beta clone S31 prokMSA_id:072537 AF489694 clone R_5 prokMSA_id:065841 AF507489 soil clone S062 prokMSA_id:065764 AF507612 soil clone C189 prokMSA_id:059141 AF542379 beta clone CD20G03 prokMSA_id:036545 AJ233519 clone WR141 prokMSA_id:019475 AJ233525 clone WR164 prokMSA_id:062525 AJ504609 isolate P2CN72 prokMSA_id:071493 AJ518334 clone Neu2P1-79 prokMSA_id:056923 AJ518660 clone Sai2P2-40 prokMSA_id:085861 AY217473 gamma clone WCB55 prokMSA_id:083327 AY253442 clone HC9 prokMSA_id:094862 AY369150 clone F-OTU11 prokMSA_id:098669 AY395141 clone D22ST prokMSA_id:006739 U45680 clone AI356. prokMSA_id:006740 U45693 clone CL06. prokMSA_id:006741 U45697 clone CL10. prokMSA_id:006734 U46750 str. OS_env. R. prokMSA_id:006746 X84454 str. SBR1009. prokMSA_id:006742 X84480 str. SBR1037. prokMSA_id:006745 X84492 str. SBR1056. prokMSA_id:006730 X91180 clone G8. prokMSA_id:006744 X91184 clone G12. prokMSA_id:006729 X91469 AEspoe hard rock 10-626m below ground surface clone A46L. 2.28.2.5.7 THA.AROMATICA_SUBGROUP 96 seqs 2.28.2.5.7.002 OTU 1 seq prokMSA_id:006754 AJ007007 Azoarcus sp. str. LU1. 2.28.2.5.7.003 OTU 3 seqs prokMSA_id:006750 AJ005817 Thauera terpenica str. 58Eu DSM 12139 . prokMSA_id:006752 AJ005818 Thauera terpenica str. 21Mol. prokMSA_id:006753 Y17285 str. pCyN2. 2.28.2.5.7.005 OTU 27 seqs prokMSA_id:063593 AB066262 Thauera sp. DNT-1 prokMSA_id:006758 AF110005 Thauera mz1t str. mz1t. prokMSA_id:006759 AF123264 Thauera aromatica str. 3CB-1. prokMSA_id:070860 AF170281 Thauera aromatica prokMSA_id:036782 AF204253 beta SBR1011 prokMSA_id:038171 AF204254 beta SBR1022 prokMSA_id:023705 AF229881 Thauera aromatica strain 3CB2 prokMSA_id:069798 AF229882 Thauera aromatica strain 3CB3 prokMSA_id:036677 AF229887 Thauera aromatica strain 3BB1 prokMSA_id:050196 AF229889 Thauera sp. P-4CB1 prokMSA_id:065367 AF450463 beta clone Orbal D16 prokMSA_id:006751 AJ009507 clone SJA-186. prokMSA_id:021471 AJ277705 Thauera sp. strain 1917 prokMSA_id:040990 AJ315677 Thauera sp. S2 strain S2 prokMSA_id:025264 AJ315678 Thauera sp. B4P strain B4P prokMSA_id:027601 AJ315679 Thauera aromatica strain SP prokMSA_id:022130 AJ315680 Thauera aromatica strain LG356 prokMSA_id:044747 AJ315681 Thauera aromatica strain S100 prokMSA_id:064877 AJ412670 clone 23 prokMSA_id:058572 AJ505850 Thauera sp. PIV-1 strain PIV-1 prokMSA_id:006763 U95176 Thauera T1 str. T1. prokMSA_id:006755 X64373 clone AX39. prokMSA_id:006756 X68491 Thauera selenatis str. Ax ATCC 55363 . prokMSA_id:006757 X77118 Thauera aromatica str. K172 clone K1 DSM 6984 . prokMSA_id:006760 X83533 Azoarcus mXyN1 str. mXyN1. prokMSA_id:006761 Y17590 Thauera mechernichii str. TL1. prokMSA_id:006762 Y17591 Thauera selenatis str. Ax ATCC 55363 . 2.28.2.5.7.006 OTU 1 seq prokMSA_id:006749 Y09967 str. 72Chol. 2.28.2.5.7.007 OTU 1 seq prokMSA_id:006747 AJ005816 Thauera linaloolentis str. 47Lol DSM 12138 . 2.28.2.5.7.008 OTU 1 seq prokMSA_id:018623 AF229868 Thauera aromatica strain 4FB2 2.28.2.5.7.009 OTU 1 seq prokMSA_id:019069 AJ277704 Thauera sp. strain O 2.28.2.5.7.011 OTU 1 seq prokMSA_id:023232 AJ387861 oxSCC-3 2.28.2.5.7.013 OTU 4 seqs prokMSA_id:023140 AF407394 clone RB9C3 prokMSA_id:040231 AJ296553 GR-WP33-36 clone GR-WP33-36 prokMSA_id:071612 AY050578 clone GOUTA6 prokMSA_id:056113 AY133069 beta clone ccs214 2.28.2.5.7.014 OTU 1 seq prokMSA_id:027286 AJ306683 Sterolibacterium denitrificans strain Chol-1S 2.28.2.5.7.015 OTU 1 seq prokMSA_id:030710 AF351219 beta clone 36-9 2.28.2.5.7.016 OTU 1 seq prokMSA_id:030875 AF395432 Eub No. 23 2.28.2.5.7.017 OTU 1 seq prokMSA_id:069013 AF293007 Green Bay ferromanganous micronodule MNC9 2.28.2.5.7.018 OTU 1 seq prokMSA_id:042293 AF229867 Thauera aromatica strain 4FB1 2.28.2.5.7.019 OTU 1 seq prokMSA_id:064600 AF467372 beta clone 1600 2.28.2.5.7.020 OTU 1 seq prokMSA_id:067829 AY082479 beta clone 44a-U1-9 2.28.2.5.7.021 OTU 1 seq prokMSA_id:071611 AY098637 Azoarcus sp. 2.28.2.5.7.022 OTU 1 seq prokMSA_id:088879 AY315327 rumen clone JRCJ33 2.28.2.5.7.023 OTU 1 seq prokMSA_id:098760 AY424821 clone mv13.12 2.28.2.5.7.999 poor quality 46 seqs prokMSA_id:006748 AB021377 Pseudomonas butanovora IAM 12574. prokMSA_id:048803 AB047118 OCG7 prokMSA_id:040338 AB047134 ONG7 prokMSA_id:024818 AF104284 Beta-130 prokMSA_id:030592 AF104291 Beta-145 prokMSA_id:025140 AF104292 Beta-146 prokMSA_id:034380 AF145824 Metal-contaminated soil clone K20-21 prokMSA_id:049073 AF289908 beta Kmlps6-12 prokMSA_id:019619 AF314447 PHOS-HE26 prokMSA_id:044825 AF332253 clone C12-22 prokMSA_id:029499 AF387323 clone PN1 prokMSA_id:018363 AF387328 clone PN6 prokMSA_id:050486 AF390910 clone ICBTA10 prokMSA_id:066588 AF400090 clone P1a4-9 prokMSA_id:021841 AF400095 Da3-33 prokMSA_id:032667 AF400101 Tb3-R prokMSA_id:033923 AF428624 clone CRD99-46 prokMSA_id:037846 AF428649 clone CRD99-71 prokMSA_id:023193 AF429076 clone CR99-7-42 prokMSA_id:045453 AF429106 clone CR99-7-72 prokMSA_id:041891 AF429233 clone CR99-2-47 prokMSA_id:020750 AF429247 clone CR99-2-61 prokMSA_id:057552 AF438167 Azoarcus sp. prokMSA_id:057544 AF438172 Thauera sp. prokMSA_id:057543 AF438174 Thauera sp. prokMSA_id:077511 AF527024 beta 47Ft prokMSA_id:077338 AF527027 beta 40Fb prokMSA_id:069123 AF530954 Beta zj21 prokMSA_id:073762 AF530962 Beta zj62 prokMSA_id:059430 AF540837 clone DP10u30 prokMSA_id:059428 AF540838 clone DP10u29 prokMSA_id:042982 AJ132051 beta Band06958 prokMSA_id:026074 AJ132052 beta Band06957 prokMSA_id:087401 AJ410873 Thauera sp. clone B6-60 prokMSA_id:087148 AJ410874 Thauera sp. clone B6-52 prokMSA_id:048277 AJ421213 clone C4-K12 prokMSA_id:077635 AJ508156 clone J2_11 prokMSA_id:057070 AJ518475 clone Qui2P1-17 prokMSA_id:097086 AJ555435 clone AU01 prokMSA_id:095524 AJ555436 clone SU01 prokMSA_id:080828 AY192317 beta clone S1a-4A prokMSA_id:080328 AY192320 beta clone S2-9C prokMSA_id:085216 AY263722 beta clone FBR8 prokMSA_id:006765 X84456 str. SBR1011. prokMSA_id:006764 X84466 str. SBR1022. prokMSA_id:016870 Y13424 strain mr3D 2.28.2.5.8 AZC.INDIGENS_SUBGROUP 181 seqs 2.28.2.5.8.005 OTU 1 seq prokMSA_id:006802 AF011344 Azoarcus BH72 str. BH72. 2.28.2.5.8.006 OTU 7 seqs prokMSA_id:006786 AF072918 clone S3. prokMSA_id:006787 AF072919 clone H25. prokMSA_id:006799 AF072921 clone S23. prokMSA_id:006800 AF072924 clone H30. prokMSA_id:006789 AF072925 clone A2-33. prokMSA_id:047981 AF234732 sludge H35 prokMSA_id:049117 AF234762 sludge S10 2.28.2.5.8.007 OTU 4 seqs prokMSA_id:006798 AF072920 clone H20. prokMSA_id:006788 AF072923 clone H12. prokMSA_id:006790 AF072926 clone H23. prokMSA_id:051803 AF234757 sludge S40 2.28.2.5.8.008 OTU 37 seqs prokMSA_id:044225 AB033745 Azoarcus sp. CC-11 prokMSA_id:006769 AF011328 Azoarcus CR23 str. CR23. prokMSA_id:006770 AF011329 Azoarcus PH002 str. PH002. prokMSA_id:006796 AF011330 Azoarcus FL05 str. FL05. prokMSA_id:006778 AF123075 Azoarcus tolulyticus str. BL11. prokMSA_id:006779 AF123076 Azoarcus toluclasticus str. MF7. prokMSA_id:006780 AF123077 Azoarcus toluclasticus str. MF63. prokMSA_id:006797 AF129465 Azoarcus T str. T. prokMSA_id:051917 AF229857 Azoarcus tolulyticus strain 2FB2 prokMSA_id:035148 AF229861 Azoarcus tolulyticus strain 2FB6 prokMSA_id:030791 AF229876 Azoarcus tolulyticus strain 4FB10 prokMSA_id:066610 AF331975 Azoarcus sp. HxN1 prokMSA_id:049535 AF395431 Eub No. 21 prokMSA_id:066959 AF482683 Azoarcus sp. HA prokMSA_id:064547 AF515816 Azoarcus sp. CIB prokMSA_id:039189 AJ315676 Azoarcus buckelii strain U120 prokMSA_id:059923 AY133068 beta clone ccs2133 prokMSA_id:059917 AY133073 beta clone ccs250 prokMSA_id:006804 L33687 Azoarcus denitrificians str. Td-1. prokMSA_id:006766 L33688 Azoarcus denitrificians str. Td-15. prokMSA_id:006781 L33689 Azoarcus denitrificians str. Td-17. prokMSA_id:006807 L33690 Azoarcus denitrificians str. Td-19. prokMSA_id:006809 L33691 Azoarcus denitrificians str. Td-2. prokMSA_id:006784 L33692 Azoarcus denitrificians str. Td-21. prokMSA_id:006782 L33693 Azoarcus denitrificians str. Td-3. prokMSA_id:006775 L33694 Azoarcus tolulyticus str. Tol-4. prokMSA_id:006795 U44853 Azoarcus sp. str. pF6. prokMSA_id:006805 U82665 Azoarcus tolulyticus str. XQ3. prokMSA_id:006785 X77679 Azoarcus evansii str. KB740 DSM 6898 . prokMSA_id:006773 X83531 Azoarcus EbN1 str. EbN1. prokMSA_id:006774 X83532 Azoarcus PbN1 str. PbN1. prokMSA_id:006791 X83534 Azoarcus ToN1 str. ToN1. prokMSA_id:006776 Y11040 Azoarcus sp. str. M3. prokMSA_id:006777 Y11041 Azoarcus sp. str. M3. prokMSA_id:006771 Y13222 Azoarcus 22Lin str. 22Lin. prokMSA_id:006767 Y14701 Azoarcus anaerobius str. LuFRes1 DSM 12081 . prokMSA_id:006768 Y17284 str. pCyN1. 2.28.2.5.8.009 OTU 1 seq prokMSA_id:006794 AF026985 clone OPB37. 2.28.2.5.8.010 OTU 1 seq prokMSA_id:006793 U46748 str. OS isolate ac-16. 2.28.2.5.8.011 OTU 1 seq prokMSA_id:006792 AF011345 Azoarcus indigens str. VB32 LMG 9092 . 2.28.2.5.8.012 OTU 1 seq prokMSA_id:006783 AF011343 Azoarcus communis str. SWub3 DSM 12120 . 2.28.2.5.8.013 OTU 1 seq prokMSA_id:006772 U58019 Thiobacillus aquaesulis. 2.28.2.5.8.014 OTU 1 seq prokMSA_id:068826 AF351573 beta clone NJ29 2.28.2.5.8.015 OTU 1 seq prokMSA_id:016597 AF358001 clone LO13.1 2.28.2.5.8.016 OTU 1 seq prokMSA_id:018516 AJ318105 clone BIai14 2.28.2.5.8.017 OTU 1 seq prokMSA_id:021532 AB024934 Sphingomonas sp. A1 2.28.2.5.8.018 OTU 3 seqs prokMSA_id:056447 AY095418 yard-trimming-compost clone S-51 prokMSA_id:077084 AY154516 earthworm intestine clone ew44 prokMSA_id:076578 AY154559 earthworm intestine clone lw64 2.28.2.5.8.019 OTU 1 seq prokMSA_id:068814 AF379692 clone SL19 2.28.2.5.8.020 OTU 1 seq prokMSA_id:027927 AB049763 Denitromonas aromaticus 2.28.2.5.8.021 OTU 1 seq prokMSA_id:029264 AF352385 Candidatus Procabacter sp. TUMSJ-226 2.28.2.5.8.022 OTU 1 seq prokMSA_id:031143 AJ007650 clone 1405-9 2.28.2.5.8.023 OTU 4 seqs prokMSA_id:031185 AF204243 beta GC24 prokMSA_id:048813 AF204251 beta SBR2080 prokMSA_id:032687 AF204252 beta SBR1001 prokMSA_id:067281 AF495407 clone F10.5 2.28.2.5.8.024 OTU 3 seqs prokMSA_id:045071 AF177424 Candidatus Procabacter sp. UWE2 prokMSA_id:043515 AF177425 Candidatus Procabacter sp. P23 prokMSA_id:052040 AF177426 Candidatus Procabacter sp. UWC6 2.28.2.5.8.025 OTU 1 seq prokMSA_id:045625 AF204249 beta SBR1009 2.28.2.5.8.026 OTU 1 seq prokMSA_id:046568 AB071327 beta clone:pHAuB-J 2.28.2.5.8.027 OTU 1 seq prokMSA_id:052341 AH010361 Lake Michigan sediment LMBA38 and genes 2.28.2.5.8.028 OTU 1 seq prokMSA_id:059905 AY133089 gamma clone ccslm229 2.28.2.5.8.029 OTU 1 seq prokMSA_id:064013 AB087363 clone:F8 2.28.2.5.8.030 OTU 1 seq prokMSA_id:064612 AF467355 beta clone 1608 2.28.2.5.8.031 OTU 1 seq prokMSA_id:067253 AF495435 clone F13.4 2.28.2.5.8.032 OTU 1 seq prokMSA_id:074001 AF423284 soil clone 646-2 2.28.2.5.8.033 OTU 1 seq prokMSA_id:074235 AJ431352 Azoarcus sp. isolate ikaite un-c17 2.28.2.5.8.034 OTU 1 seq prokMSA_id:074506 AF016401 2.28.2.5.8.035 OTU 1 seq prokMSA_id:075583 AJ518782 beta clone JG37-AG-35 2.28.2.5.8.036 OTU 1 seq prokMSA_id:077045 AF431265 beta clone C32.16SM 2.28.2.5.8.037 OTU 1 seq prokMSA_id:077638 AB089101 beta clone:Rs-B77 2.28.2.5.8.038 OTU 1 seq prokMSA_id:077750 AJ508151 clone J2_3 2.28.2.5.8.039 OTU 2 seqs prokMSA_id:079269 AY188329 clone KD9-41 prokMSA_id:081291 AY218668 clone KD9-41 2.28.2.5.8.040 OTU 1 seq prokMSA_id:079276 AY187339 clone csbio160344 2.28.2.5.8.041 OTU 1 seq prokMSA_id:082457 AJ548917 clone BIOEST-28 2.28.2.5.8.042 OTU 1 seq prokMSA_id:086407 AY214858 beta clone BB-2-A11F 2.28.2.5.8.043 OTU 4 seqs prokMSA_id:089345 AY328574 HOClCi25 prokMSA_id:089107 AY328608 HOClCi59 prokMSA_id:090310 AY328620 HOClCi71 prokMSA_id:089219 AY328712 DSSD13 2.28.2.5.8.044 OTU 3 seqs prokMSA_id:089347 AY328719 DSS20 prokMSA_id:090051 AY328747 DSSD49 prokMSA_id:089651 AY328787 DSSD90 2.28.2.5.8.045 OTU 1 seq prokMSA_id:092112 AY344131 clone FX128-2 2.28.2.5.8.046 OTU 1 seq prokMSA_id:092816 AY359829 clone cEIII33 2.28.2.5.8.047 OTU 1 seq prokMSA_id:093423 AJ581622 beta clone KCM-C-125 2.28.2.5.8.048 OTU 1 seq prokMSA_id:093464 AJ581593 beta clone KCM-B-81 2.28.2.5.8.049 OTU 1 seq prokMSA_id:093788 AJ581620 beta clone KCM-C-61 2.28.2.5.8.050 OTU 1 seq prokMSA_id:093931 AJ582195 beta- clone Gitt-GS-125 2.28.2.5.8.051 OTU 1 seq prokMSA_id:094033 AJ581621 beta clone KCM-C-36 2.28.2.5.8.052 OTU 1 seq prokMSA_id:098209 AY160864 clone COB P4-11 2.28.2.5.8.999 poor quality 75 seqs prokMSA_id:026931 AB010606 clone ASB005 prokMSA_id:075057 AB075172 clone:TSS9 prokMSA_id:080696 AB089949 clone:HN57 prokMSA_id:084849 AB107083 beta clone:h0w prokMSA_id:082791 AB107086 beta clone:h2w-1 prokMSA_id:086219 AB107090 beta clone:h6w-3 prokMSA_id:084584 AB107092 beta clone:h8w-1 prokMSA_id:085328 AB107095 beta clone:h8w-3 prokMSA_id:086351 AB107855 beta clone:h prokMSA_id:086030 AB107869 beta clone:x prokMSA_id:092676 AB116926 clone:LB5 prokMSA_id:073537 AF104286 Beta-132 prokMSA_id:072364 AF104288 Beta-137 prokMSA_id:018756 AF104293 Beta-169 prokMSA_id:041803 AF175644 WJGRT-130 prokMSA_id:073245 AF320929 Lake Michigan sediment LMBGA6-8 prokMSA_id:073159 AF320972 Lake Michigan sediment LMBA33 prokMSA_id:049812 AF320973 Lake Michigan sediment LMBA33 prokMSA_id:044377 AF320975 Lake Michigan sediment LMBA38 prokMSA_id:037556 AF332292 clone T26-36 prokMSA_id:036901 AF357995 clone LO12.4 prokMSA_id:036805 AF367231 clone PDS2 prokMSA_id:042396 AF423255 soil clone 376-2 prokMSA_id:034522 AF428743 clone CR98-5-13 prokMSA_id:018844 AF429130 clone CR99-24-20 prokMSA_id:036489 AF429146 clone CR99-24-36 prokMSA_id:075515 AF431267 beta clone C32.23SM prokMSA_id:075139 AF431270 beta clone C32.34SM prokMSA_id:076786 AF431301 beta clone N42.50PG prokMSA_id:061232 AF432666 clone NOS7.169WL prokMSA_id:081586 AF466712 beta clone DBS9 prokMSA_id:065731 AF507650 soil clone C1221 prokMSA_id:065608 AF507792 soil clone S1234 prokMSA_id:022504 AH010360 Lake Michigan sediment LMBA33 and genes prokMSA_id:016989 AJ252672 Rhizosphere soil clone RSC-II-8 prokMSA_id:074230 AJ289943 1405-79 prokMSA_id:036486 AJ289946 1605-22 prokMSA_id:043471 AJ297621 clone C44K30 prokMSA_id:032875 AJ421184 clone C1-K14 prokMSA_id:024424 AJ437442 clone 1_34_309 prokMSA_id:062620 AJ504493 isolate P1CN23 prokMSA_id:056244 AJ504582 isolate P2CN33 prokMSA_id:062543 AJ504584 isolate P2CN35 prokMSA_id:057289 AJ518177 clone Mul1P2-96 prokMSA_id:057182 AJ518337 clone Neu2P1-9 prokMSA_id:057047 AJ518502 clone Qui2P2-23 prokMSA_id:071281 AJ518524 clone Qui2P3-41 prokMSA_id:056951 AJ518627 clone Sai1P1-42 prokMSA_id:055716 AJ518640 clone Sai1P1-88 prokMSA_id:061554 AY043658 beta clone NOW2.33WL prokMSA_id:061441 AY043792 beta clone SMS9.42WL prokMSA_id:061438 AY043793 beta clone SMS9.93WL prokMSA_id:071736 AY144210 beta clone LTUB00214 prokMSA_id:069216 AY144212 beta clone LTUB01614 prokMSA_id:069698 AY144215 beta clone LTUB03514 prokMSA_id:069684 AY144220 beta clone LTUB04856 prokMSA_id:069569 AY144224 beta clone LTUB05656 prokMSA_id:069685 AY144228 beta clone LTUB09114 prokMSA_id:069477 AY144230 beta clone LTUB09814 prokMSA_id:085585 AY221032 clone CCD10 prokMSA_id:085756 AY242701 soil clone Tc122-E07 prokMSA_id:085558 AY242710 soil clone Tc124-H11 prokMSA_id:084516 AY242711 soil clone Tc124-E11 prokMSA_id:082970 AY253431 clone AC6 prokMSA_id:086035 AY253439 clone HC6 prokMSA_id:098232 AY391658 soil clone M42 prokMSA_id:006801 L15530 Azoarcus sp. str. BH72. prokMSA_id:006806 L15531 Azoarcus indigens str. VB32 . prokMSA_id:018041 U56629 beta clone D4 prokMSA_id:006810 X85432 Azoarcus communis str. SWub3 . prokMSA_id:006808 X85433 Azoarcus communis str. KGP1. prokMSA_id:006803 X85434 Azoarcus sp. prokMSA_id:046232 Y13377 enrichment culture LET-13 clone I prokMSA_id:052874 Y13812 enrichment culture LET-13 clone III prokMSA_id:073366 Z69278 sp. clone group JN13d 2.28.2.6 SPR.VOLUTANS_GROUP 10 seqs 2.28.2.6.001 OTU 1 seq prokMSA_id:006816 L20810 unnamed organism. 2.28.2.6.999 poor quality 9 seqs prokMSA_id:061703 AJ416240 clone Sta4-26 prokMSA_id:067214 AY090656 Methylobacter sp. clone C3 prokMSA_id:081062 AY216733 soil clone 32b prokMSA_id:006817 M34131 Spirillum volutans ATCC 19554 . prokMSA_id:006815 M79426 Thiobacillus thioparus ATCC 8158 . prokMSA_id:006814 X84449 str. SBR1001. prokMSA_id:006811 X84465 str. SBR1021. prokMSA_id:006812 X84518 str. SBR1090. prokMSA_id:006813 X84610 str. SBR2080. 2.28.2.7 ENVIRONMENTAL_CLONE_PAD37 1 seq 2.28.2.7.999 poor quality 1 seq prokMSA_id:006818 D26224 soil from paddy field clone PAD37. 2.28.2.8 BORDETELLA_GROUP 418 seqs 2.28.2.8.1 LAU.MIRABILIS_SUBGROUP 9 seqs 2.28.2.8.1.001 OTU 3 seqs prokMSA_id:074332 AY005030 Lautropia sp. oral clone AP009 prokMSA_id:026684 AY053478 AT425_EubA4 prokMSA_id:006819 X73223 Lautropia mirabilis str. AB2188 NCTC 12852 . 2.28.2.8.1.002 OTU 1 seq prokMSA_id:064876 AJ412672 clone 3 2.28.2.8.1.003 OTU 1 seq prokMSA_id:081664 AY218566 clone KD1-79 2.28.2.8.1.004 OTU 1 seq prokMSA_id:083049 AY221075 clone CCU16 2.28.2.8.1.999 poor quality 3 seqs prokMSA_id:084480 AB107873 beta clone:2d prokMSA_id:088166 AJ491777 Lautropia sp. prokMSA_id:006820 X97652 Lautropia mirabilis ACM 3763. 2.28.2.8.2 SUT.WADSWORTHENSIS_SUBGROUP 7 seqs 2.28.2.8.2.001 OTU 2 seqs prokMSA_id:006822 L37785 Sutterella wadsworthensis str. WAL 7877. prokMSA_id:006821 L37786 Sutterella wadsworthensis str. WAL 9054. 2.28.2.8.2.999 poor quality 5 seqs prokMSA_id:062103 AB064864 beta clone:NO51 prokMSA_id:062098 AB064866 beta clone:NB2C10 prokMSA_id:062089 AB064877 beta clone:NS1H5 prokMSA_id:065263 AB075675 chicken cecal clone:2E3 prokMSA_id:068900 AF337884 gold mine D29 2.28.2.8.3 PLS.EUROPAEA_SUBGROUP 36 seqs 2.28.2.8.3.001 OTU 1 seq prokMSA_id:006841 U31495 str. S2. 2.28.2.8.3.002 OTU 2 seqs prokMSA_id:006840 AF190911 Pelistega europaea LMG 15725. prokMSA_id:006825 Y11890 Pelistega europaea str. N57 LMG 10982 . 2.28.2.8.3.003 OTU 10 seqs prokMSA_id:006828 X86575 Alcaligenes sp. str. 00-19. prokMSA_id:006829 X86576 Alcaligenes sp. str. 00-24. prokMSA_id:006832 X86579 Alcaligenes sp. str. 00-30. prokMSA_id:006833 X86580 Alcaligenes sp. str. 05-36. prokMSA_id:006834 X86581 Alcaligenes sp. str. 05-40. prokMSA_id:006835 X86582 Alcaligenes sp. str. 05-43. prokMSA_id:006836 X86583 Alcaligenes sp. str. 05-44. prokMSA_id:006837 X86585 Alcaligenes sp. str. 15-55. prokMSA_id:019571 X86586 Alcaligenes sp. strain 15-56 prokMSA_id:006839 X86592 Alcaligenes sp. str. S2-04. 2.28.2.8.3.004 OTU 1 seq prokMSA_id:006838 X86588 Alcaligenes sp. str. 15-58. 2.28.2.8.3.005 OTU 3 seqs prokMSA_id:006824 AF067729 Taylorella asinigenitalis UCD 1. prokMSA_id:030921 AF297174 Taylorella asinigenitalis strain UK-1 prokMSA_id:048585 AF297175 Taylorella asinigenitalis strain UK-2 2.28.2.8.3.006 OTU 6 seqs prokMSA_id:027919 AB066372 Taylorella equigenitalis prokMSA_id:033535 AB069660 Taylorella equigenitalis prokMSA_id:018745 AF297172 Taylorella equigenitalis strain 10783 prokMSA_id:029584 AF297173 Taylorella equigenitalis strain 96-178 prokMSA_id:047850 AF408197 Taylorella equigenitalis strain NCTC11184 complete prokMSA_id:006823 X68645 Taylorella equigenitalis NCTC 11184 . 2.28.2.8.3.007 OTU 4 seqs prokMSA_id:018037 AF133538 Oligella urethralis prokMSA_id:071251 AF227163 Oligella urethralis prokMSA_id:070363 AJ251911 Oligella urethralis strain LMG 1015 prokMSA_id:084552 AY178994 Oligella urethralis strain COH-1 2.28.2.8.3.999 poor quality 9 seqs prokMSA_id:006826 AB001520 unnamed organism. prokMSA_id:031943 AJ247262 Oligella urethralis prokMSA_id:072841 AJ247263 Oligella urethralis prokMSA_id:027980 AY055071 clone S19 prokMSA_id:069131 U31474 gamma RS15 rrs prokMSA_id:006842 U31494 str. S14. prokMSA_id:006827 X86574 Alcaligenes sp. str. 00-17. prokMSA_id:006830 X86577 Alcaligenes sp. str. 00-25. prokMSA_id:006831 X86578 Alcaligenes sp. str. 00-29. 2.28.2.8.4 BRD.BRONCHISEPTICA_SUBGROUP 366 seqs 2.28.2.8.4.002 OTU 1 seq prokMSA_id:006892 AJ004688 Alcaligenes D2 str. D2. 2.28.2.8.4.007 OTU 5 seqs prokMSA_id:077605 AB098570 Alcaligenes sp. TUT1002 prokMSA_id:006881 X86584 Alcaligenes sp. str. 05-51. prokMSA_id:024290 X86587 Alcaligenes sp. strain 15-57 prokMSA_id:006882 X86589 Alcaligenes sp. str. 15-62. prokMSA_id:006883 X86590 Alcaligenes sp. str. 30-68. 2.28.2.8.4.008 OTU 1 seq prokMSA_id:006880 AF050626 clone WsCH66. 2.28.2.8.4.009 OTU 2 seqs prokMSA_id:006876 L29303 symbiont of Crithidia sp. prokMSA_id:071865 L29303 Kinetoplastibacterium crithidii complete 2.28.2.8.4.012 OTU 26 seqs prokMSA_id:059709 AB091759 Alcaligenes faecalis complete prokMSA_id:006864 AF155147 Alcaligenes faecalis subsp. dimethylsulfidosus str. M3A. prokMSA_id:028612 AF407379 clone RA7C9 prokMSA_id:031266 AF407380 clone RA7C16 prokMSA_id:018554 AF407382 clone RB7C3 prokMSA_id:029960 AF407389 clone Ra9C2 prokMSA_id:051247 AF407414 clone RB13C11 prokMSA_id:019516 AF423224 soil clone 1392-1 prokMSA_id:006863 AJ002815 Alcaligenes sp. str. R4. prokMSA_id:074694 AJ242986 Alcaligenes faecalis subsp. parafaecalis strain G prokMSA_id:025009 AJ277669 Alcaligenes faecalis prokMSA_id:076004 AY162913 clone ZB-Z37 prokMSA_id:081261 AY214174 clone ZZ9C4 prokMSA_id:081610 AY214188 clone ZZ12AC4 prokMSA_id:082057 AY214192 clone ZZ14C6 prokMSA_id:081518 AY214197 clone ZZ14AC6 prokMSA_id:082241 AY214198 clone ZZ14AC10 prokMSA_id:088201 AY296716 Alcaligenes sp. 2-1 prokMSA_id:088431 AY296717 Alcaligenes sp. 2-6 prokMSA_id:092976 AY346136 Alcaligenes sp. IS-46 complete prokMSA_id:092133 AY346137 Alcaligenes sp. IS-18 complete prokMSA_id:092941 AY346138 Alcaligenes sp. IS-17 complete prokMSA_id:093023 AY346139 Alcaligenes sp. IS-33 complete prokMSA_id:093083 AY346140 Alcaligenes sp. IS-67 complete prokMSA_id:092906 AY346141 Alcaligenes sp. IS-92 complete prokMSA_id:006867 D88008 Alcaligenes faecalis IAM 12369. 2.28.2.8.4.013 OTU 1 seq prokMSA_id:006860 L29265 endosymbiont of Blastocrithidia culicis. 2.28.2.8.4.014 OTU 1 seq prokMSA_id:006859 AJ133493 Alcaligenes sp. isolate CCUG 36768 2.28.2.8.4.015 OTU 1 seq prokMSA_id:006858 Y07585 clone DA014. 2.28.2.8.4.016 OTU 1 seq prokMSA_id:006857 X92415 Alcaligenes sp. str. L6. 2.28.2.8.4.017 OTU 1 seq prokMSA_id:006856 Y12639 Denitrobacter permanens. 2.28.2.8.4.025 OTU 1 seq prokMSA_id:022985 AJ277742 Brackiella oedipodis strain LMG 19451 R8846 2.28.2.8.4.026 OTU 1 seq prokMSA_id:023259 AF287277 Alcaligenes faecalis 2.28.2.8.4.027 OTU 3 seqs prokMSA_id:062876 AB088856 Pigmentiphaga sp. NDS-1 prokMSA_id:024220 AF282916 Pigmentiphaga kullae strain K24 prokMSA_id:072020 AF394170 Blackwater bioreactor BW5 2.28.2.8.4.028 OTU 1 seq prokMSA_id:024265 AJ318149 clone BIji21 2.28.2.8.4.030 OTU 12 seqs prokMSA_id:006850 AB021360 str. rA9. prokMSA_id:064042 AB087328 clone:CF86 prokMSA_id:072856 AF150694 Elbe River snow isolate Iso14 prokMSA_id:066242 AF508100 Alcaligenes defragrans isolate N1 prokMSA_id:066243 AF508101 Alcaligenes defragrans isolate TG26 prokMSA_id:066241 AF508102 Alcaligenes defragrans isolate TJ4 prokMSA_id:006845 AJ005447 Alcaligenes defragrans str. 54Pin DSM 12141 . prokMSA_id:006851 AJ005448 Alcaligenes defragrans str. 51Men. prokMSA_id:006852 AJ005449 Alcaligenes defragrans str. 62Car. prokMSA_id:006853 AJ005450 Alcaligenes defragrans str. 65Phen. prokMSA_id:025170 AJ318171 beta clone BIrii6 prokMSA_id:006846 U82826 Alcaligenes NKNTAU str. NKNTAU. 2.28.2.8.4.031 OTU 1 seq prokMSA_id:026472 AF224846 clone Car117fc 2.28.2.8.4.032 OTU 1 seq prokMSA_id:026755 AJ318125 beta clone BIfciii38 2.28.2.8.4.033 OTU 1 seq prokMSA_id:027017 AF316744 Crater Lake CL0-83 2.28.2.8.4.034 OTU 2 seqs prokMSA_id:045567 AF227164 Oligella ureolytica prokMSA_id:035834 AJ251912 Oligella ureolytica strain LMG 6519 2.28.2.8.4.035 OTU 1 seq prokMSA_id:055861 AJ412686 Alcaligenes sp. I 2.28.2.8.4.038 OTU 1 seq prokMSA_id:038105 AF371864 clone p-861-a5 2.28.2.8.4.039 OTU 1 seq prokMSA_id:041369 AJ277706 Alcaligenes sp. strain N 2.28.2.8.4.042 OTU 1 seq prokMSA_id:045940 AF224863 clone Car64fc 2.28.2.8.4.043 OTU 1 seq prokMSA_id:049039 AF293006 Green Bay ferromanganous micronodule MND1 2.28.2.8.4.046 OTU 2 seqs prokMSA_id:062718 AF507838 beta clone ML617.5J-48 prokMSA_id:062713 AF507839 beta clone ML602J-52 2.28.2.8.4.047 OTU 1 seq prokMSA_id:064879 AJ412685 Alcaligenes sp. H 2.28.2.8.4.049 OTU 120 seqs prokMSA_id:006871 AB010840 Achromobacter ruhlandii str. EY3918 ATCC 15749. prokMSA_id:006886 AB010841 Achromobacter piechaudii str. EY3860 ATCC 43552. prokMSA_id:006893 AB015607 Bordetella sp. str. KP22. prokMSA_id:006847 AB021336 str. rM1. prokMSA_id:006848 AB021351 str. rM16. prokMSA_id:006849 AB021352 str. rM17. prokMSA_id:037958 AB039335 Bordetella sp. M1-6 prokMSA_id:032410 AB046605 Alcaligenes sp. STC1 prokMSA_id:093327 AB070889 Bordetella sp. 10d prokMSA_id:046142 AB076883 Achromobacter sp. clone:TSL-17 prokMSA_id:043556 AB076884 Achromobacter sp. clone:TSL-20 prokMSA_id:006889 AF142326 Bordetella pertussis str. Tohama CIP 81.32. prokMSA_id:006890 AF142327 Bordetella pertussis CIP 105.894. prokMSA_id:040719 AF143843 clone AF2.3 prokMSA_id:026037 AF177666 Bordetella avium complete prokMSA_id:018218 AF177667 Bordetella hinzii complete prokMSA_id:032514 AF186070 Alcaligenes sp. prokMSA_id:049793 AF205370 Achromobacter ruhlandii prokMSA_id:020845 AF225979 Achromobacter xylosoxidans subsp. xylosoxidans prokMSA_id:049531 AF227829 Bordetella sp. 61717 prokMSA_id:028965 AF232712 Achromobacter xylosoxidans subsp. denitrificans prokMSA_id:049946 AF366577 Bordetella parapertussis strain B24 prokMSA_id:053451 AF366578 Bordetella parapertussis strain B1232 prokMSA_id:039920 AF366579 Bordetella holmesii strain B436 prokMSA_id:040974 AF394171 Blackwater bioreactor BW6 prokMSA_id:047955 AF407199 clone GIF8 prokMSA_id:035264 AF411019 Achromobacter xylosoxidans strain AU0665 prokMSA_id:042554 AF411020 Achromobacter xylosoxidans strain AU1011 prokMSA_id:028519 AF411021 Achromobacter xylosoxidans subsp. xylosoxidans prokMSA_id:050693 AF418952 clone HTCC2 prokMSA_id:056470 AF430122 Alcaligenes sp. VKM B-2263 prokMSA_id:021204 AF439314 Achromobacter xylosoxidans subsp. xylosoxidans strain A19 prokMSA_id:057491 AF447791 beta clone S5 prokMSA_id:033669 AF451852 Alcaligenes sp. dT prokMSA_id:064614 AF467353 beta clone 1518 prokMSA_id:025236 AF467978 Achromobacter xylosoxidans subsp. xylosoxidans prokMSA_id:018382 AF469002 Bordetella holmesii prokMSA_id:067343 AF494543 Benzoapyrene-degrading BPC7 prokMSA_id:066330 AF506988 Br-54 prokMSA_id:073213 AF511432 Alcaligenes sp. CCCO7 prokMSA_id:065391 AF511516 Achromobacter xylosoxidans prokMSA_id:062502 AF513937 Alcaligenaceae clone LA1-B29N prokMSA_id:055338 AF531768 Achromobacter xylosoxidans prokMSA_id:060324 AF534218 clone Phe95 prokMSA_id:085429 AF534426 beta clone TLM02/TLMdgge21 prokMSA_id:006869 AJ002802 Alcaligenes sp. str. 151. prokMSA_id:006878 AJ002804 Alcaligenes sp. str. 159. prokMSA_id:006870 AJ002808 Alcaligenes sp. str. R5. prokMSA_id:006879 AJ002809 Alcaligenes sp. str. R6. prokMSA_id:006887 AJ224990 str. from Lake Gossenkoellesee. prokMSA_id:048644 AJ239044 Bordetella holmesii isolate MDU9904076 prokMSA_id:021477 AJ243604 Achromobacter sp. prokMSA_id:021781 AJ249861 Bordetella petrii strain DSM 12804 prokMSA_id:038214 AJ277798 Bordetella trematum strain DSM 11334 prokMSA_id:043620 AJ278450 Bordetella parapertussis strain DSM 4922 prokMSA_id:064740 AJ278451 Achromobacter xylosoxidans subsp. denitrificans strain DSM 30026 prokMSA_id:018270 AJ278452 Bordetella bronchiseptica strain DSM 10303 prokMSA_id:019435 AJ290001 FukuN65 prokMSA_id:017784 AJ290015 FukuS68 prokMSA_id:025051 AJ290018 FukuS93 prokMSA_id:042478 AJ290048 FukuS135 prokMSA_id:073293 AJ306836 Alcaligenes sp. isolate ON5 prokMSA_id:077823 AJ491839 Alcaligenes xylosoxidans strain A1 prokMSA_id:078128 AJ491840 Alcaligenes xylosoxidans strain A2 prokMSA_id:077844 AJ491844 Alcaligenes xylosoxidans strain E prokMSA_id:077845 AJ491845 Alcaligenes xylosoxidans strain F prokMSA_id:078111 AJ491846 Alcaligenes xylosoxidans strain H prokMSA_id:058769 AJ508608 Achromobacter xylosoxidans isolate MBRG 4.31 prokMSA_id:059273 AJ508699 isolate MBRG 4.14 prokMSA_id:083269 AJ508999 Alcaligenes faecalis isolate 6818m-E prokMSA_id:085708 AJ509001 Alcaligenes faecalis isolate 7632-A1 prokMSA_id:082582 AJ509002 Alcaligenes faecalis isolate 7634-A2 prokMSA_id:083642 AJ509003 Alcaligenes faecalis isolate 7644-F prokMSA_id:084201 AJ509012 Alcaligenes faecalis isolate 5659-H prokMSA_id:077912 AJ514452 clone AS2o3 prokMSA_id:078940 AJ534850 Alcaligenes sp. DW104 isolate DW104 prokMSA_id:094243 AJ551119 Alcaligenes xylosoxidans isolate mp5 prokMSA_id:096919 AJ575703 beta clone NE01 prokMSA_id:030978 AY027500 Arsenite-oxidizing NT-10 prokMSA_id:032178 AY027504 Arsenite-oxidizing BEN-4 prokMSA_id:026123 AY027506 Arsenite-oxidizing 'Alcaligenes fecalis HLE' prokMSA_id:033221 AY038619 clone GL182.6 prokMSA_id:081739 AY080993 Denitrobacter sp. clone ckl31 prokMSA_id:068623 AY081976 clone KRA30+05 prokMSA_id:068624 AY081977 clone KRA30+06A prokMSA_id:068622 AY081979 clone KRA30+11 prokMSA_id:068617 AY081983 clone KRA30+16 prokMSA_id:068615 AY081985 clone KRA30+18 prokMSA_id:073994 AY081994 clone KRA30-58 prokMSA_id:059999 AY131213 Alcaligenes sp. LMG 5906 prokMSA_id:078362 AY170847 Achromobacter sp. LMG 6003 prokMSA_id:078208 AY170848 Achromobacter sp. LMG 5911 prokMSA_id:080939 AY189752 Achromobacter xylosoxidans prokMSA_id:090110 AY191357 Achromobacter sp. isolate ODP1176A6H_6_B prokMSA_id:082357 AY192031 beta clone G16-GM4R prokMSA_id:081380 AY192064 beta clone P4-GM4R-t prokMSA_id:083077 AY232829 Streptomyces sp. MSU 2261 prokMSA_id:092793 AY238499 Alcaligenes sp. 92 prokMSA_id:083071 AY244787 Achromobacter xylosoxidans strain 2002-55549 prokMSA_id:086163 AY244788 Achromobacter xylosoxidans strain 2002-65601 prokMSA_id:090397 AY283260 Alcaligenes sp. PCNB-2 prokMSA_id:091543 AY331576 Alcaligenes sp. mp-2 prokMSA_id:091428 AY344371 clone K2-30-11 prokMSA_id:091811 AY345517 clone W1B-B04 prokMSA_id:091456 AY345533 clone LWSR-75 prokMSA_id:091793 BX640420 Bordetella pertussis strain Tohama I complete genome; segment 10/12 prokMSA_id:091165 BX640428 Bordetella parapertussis strain 12822 complete genome; segment 6/14 prokMSA_id:091830 BX640430 Bordetella parapertussis strain 12822 complete genome; segment 8/14 prokMSA_id:091609 BX640434 Bordetella parapertussis strain 12822 complete genome; segment 12/14 prokMSA_id:093094 BX640447 Bordetella bronchiseptica strain RB50 complete genome; segment 11/16 prokMSA_id:091984 BX640449 Bordetella bronchiseptica strain RB50 complete genome; segment 13/16 prokMSA_id:024256 D87096 Alcaligenes xylosoxydans prokMSA_id:006891 D88005 Achromobacter xylosoxidans subsp. xylosoxidans IAM 12684. prokMSA_id:031379 E03742 of Bordetella bronchiseptica prokMSA_id:025458 E06073 Bordetella bronchiseptica prokMSA_id:006872 U04820 Bordetella holmesii CDC F5101 complete prokMSA_id:006843 U04949 Bordetella parapertussis ATCC 15311 . prokMSA_id:006875 U04950 Bordetella pertussis ATCC 9797 . prokMSA_id:006888 U80417 Alcaligenes sp. str. 3-17. prokMSA_id:006877 X57026 Bordetella bronchiseptica str. S-1. 2.28.2.8.4.050 OTU 1 seq prokMSA_id:066481 AY100610 clone cvf70165 2.28.2.8.4.051 OTU 1 seq prokMSA_id:068627 AY081973 clone KRA30+01 2.28.2.8.4.052 OTU 1 seq prokMSA_id:078773 AY189648 clone EarCan121 2.28.2.8.4.053 OTU 1 seq prokMSA_id:080395 AB094952 clone:OHKB16.10 2.28.2.8.4.054 OTU 1 seq prokMSA_id:081802 AY218672 clone KD9-65 2.28.2.8.4.055 OTU 1 seq prokMSA_id:082610 AY244768 Oligella urethralis 2.28.2.8.4.056 OTU 1 seq prokMSA_id:089748 AY221606 beta clone HN4-32 2.28.2.8.4.057 OTU 1 seq prokMSA_id:091145 AY345561 clone T7-2-1A03 2.28.2.8.4.058 OTU 1 seq prokMSA_id:091424 AY345562 clone T7-2-3C03 2.28.2.8.4.059 OTU 1 seq prokMSA_id:095883 AJ575701 beta clone NE78 2.28.2.8.4.060 OTU 1 seq prokMSA_id:095941 AJ575702 beta clone NE47 2.28.2.8.4.999 poor quality 164 seqs prokMSA_id:048004 AB029416 20-45:2 prokMSA_id:052032 AB045316 Gram negative K1 prokMSA_id:076338 AB075059 clone:KCRS1 prokMSA_id:075663 AB075065 clone:KCRS9 prokMSA_id:077049 AB075069 clone:KCRS14 prokMSA_id:077211 AB075076 clone:KCR5 prokMSA_id:078021 AB086822 Burkholderia cepacia prokMSA_id:064047 AB087317 clone:CF46 prokMSA_id:083091 AB107138 Beta K-2032b parital prokMSA_id:006854 AF026986 clone OPS92B. prokMSA_id:045217 AF090536 BHA5 prokMSA_id:019809 AF090537 BHB12 prokMSA_id:036787 AF090538 BHA16 prokMSA_id:025683 AF141422 beta clone CR-PA24 prokMSA_id:025783 AF141464 beta clone CRE-FL44 prokMSA_id:021917 AF141473 beta clone CRE-FL56 prokMSA_id:074826 AF176862 24-D-degrading 912-2 prokMSA_id:021080 AF187314 JVII-08-98 prokMSA_id:045399 AF210711 clone SUD6 prokMSA_id:018118 AF210716 clone SSF11 prokMSA_id:049942 AF211824 Beta BPSI-7 prokMSA_id:041693 AF234054 #0319-2C2 prokMSA_id:031831 AF234059 #0319-2E11 prokMSA_id:047370 AF234066 #0319-6A5 prokMSA_id:019673 AF234068 #0319-6B19 prokMSA_id:035825 AF237784 Achromobacter piechaudii prokMSA_id:050215 AF240120 PIA-4 prokMSA_id:073198 AF288728 Alcaligenes sp. Cm1 prokMSA_id:069876 AF288734 Achromobacter xylosoxidans subsp. denitrificans prokMSA_id:038119 AF292240 Alcaligenes sp. Swo prokMSA_id:019829 AF302096 Achromobacter xylosoxidans subsp. xylosoxidans strain Cm3 prokMSA_id:036364 AF302097 Achromobacter xylosoxidans subsp. xylosoxidans strain Cm4 prokMSA_id:020867 AF312672 Alcaligenes sp. M15 prokMSA_id:016737 AF316745 Crater Lake CL120-83 prokMSA_id:023243 AF353705 Alcaligenes sp. PS-P2a prokMSA_id:047285 AF359285 Alcaligenes faecalis strain ST1 prokMSA_id:068254 AF365464 clone BM89MF1BD2 prokMSA_id:068238 AF365483 clone BM89MF1BH11 prokMSA_id:024591 AF380161 Alcaligenes sp. F4 prokMSA_id:029282 AF384193 Alcaligenes sp. TG26 prokMSA_id:039798 AF384194 Alcaligenes sp. TJ4 prokMSA_id:017735 AF384197 Alcaligenes sp. C4 prokMSA_id:025470 AF384198 Alcaligenes sp. N1 prokMSA_id:031953 AF390949 clone TFBMA4 prokMSA_id:043901 AF392638 clone CRC11 prokMSA_id:018859 AF406672 Achromobacter xylosoxidans subsp. xylosoxidans strain B2 prokMSA_id:067633 AF427157 Achromobacter sp. 2-2 prokMSA_id:049738 AF428739 clone CR98-5-09 prokMSA_id:029100 AF429120 clone CR99-24-10 prokMSA_id:027530 AF429160 clone CR99-24-50 prokMSA_id:048660 AF429228 clone CR99-2-42 prokMSA_id:041501 AF441305 PAH-contaminated sludge PB-10 prokMSA_id:018671 AF441306 PAH-contaminated sludge PB-11 prokMSA_id:040934 AF441307 PAH-contaminated sludge PB-12 prokMSA_id:057477 AF447799 beta clone S23 prokMSA_id:039661 AF451841 Achromobacter xylosoxidans strain dC prokMSA_id:043110 AF451849 Achromobacter xylosoxidans strain dQ prokMSA_id:072675 AF451853 Achromobacter xylosoxidans strain dU prokMSA_id:039903 AF457650 Achromobacter sp. PB31 prokMSA_id:081194 AF466717 alpha clone DBW5 prokMSA_id:020954 AF473983 beta 34-19 prokMSA_id:055516 AF477864 clone 39-UMH 8% pond prokMSA_id:067672 AF485394 clone G7 prokMSA_id:055425 AF486767 clone E5-46-HS3I-287 prokMSA_id:060495 AF488646 Beta Z11 prokMSA_id:074510 AF510042 Achromobacter xylosoxidans prokMSA_id:071375 AF530955 Beta zj22 prokMSA_id:072549 AF530963 Beta zj87 prokMSA_id:070587 AF530967 Beta so02 prokMSA_id:071189 AF530991 Beta wo37 prokMSA_id:071304 AF531004 Beta zo33 prokMSA_id:069667 AF531026 Beta Mzo2 prokMSA_id:060970 AF532132 Alcaligenaceae A-A7-2 prokMSA_id:055585 AF532134 Alcaligenaceae A-A7-4 prokMSA_id:059424 AF540840 clone I2-2 prokMSA_id:059469 AF541932 Achromobacter xylosoxidans strain PN4 prokMSA_id:059465 AF541933 Achromobacter xylosoxidans strain PN6 prokMSA_id:059464 AF541934 Achromobacter xylosoxidans strain PN7 prokMSA_id:071729 AJ006186 chemocline Beta f prokMSA_id:024411 AJ247261 Oligella ureolytica prokMSA_id:049878 AJ279492 Benzene-decomposing S24 strain S24 prokMSA_id:071908 AJ290016 FukuS75 prokMSA_id:047913 AJ295403 Rape rhizosphere M9050 prokMSA_id:033538 AJ309918 Achromobacter xylosoxidans strain dtb46 prokMSA_id:073760 AJ318192 beta clone BIuii29 prokMSA_id:086272 AJ440003 Alcaligenes sp. badwp prokMSA_id:073725 AJ518116 clone Mul01-22 prokMSA_id:074350 AJ518351 clone Neu2P3-64 prokMSA_id:056933 AJ518646 clone Sai2P1-89 prokMSA_id:056935 AJ518655 clone Sai2P2-24 prokMSA_id:089960 AJ550276 Alcaligenes faecalis isolate TK2 prokMSA_id:090385 AJ550279 Alcaligenes faecalis isolate TK33 prokMSA_id:088145 AJ568014 beta isolate DGGE-52 prokMSA_id:034254 AY055089 clone B5 prokMSA_id:030936 AY055092 clone B9 prokMSA_id:044639 AY074897 Bacillus sp. H59 prokMSA_id:081408 AY080992 Alcaligenes sp. clone ckl30 prokMSA_id:070676 AY131212 Alcaligenes sp. LMG 5890 prokMSA_id:059521 AY136514 Bordetella sp. A-A20-1 prokMSA_id:059507 AY136536 Bordetella sp. V-O7-1 prokMSA_id:069513 AY143769 Alcaligenaceae clone Lur56 prokMSA_id:071848 AY144211 beta clone LTUB00656 prokMSA_id:073253 AY144213 beta clone LTUB02456 prokMSA_id:070842 AY144214 beta clone LTUB03456 prokMSA_id:069523 AY144216 beta clone LTUB03556 prokMSA_id:073926 AY144217 beta clone LTUB03656 prokMSA_id:073195 AY144218 beta clone LTUB04056 prokMSA_id:072760 AY144219 beta clone LTUB04556 prokMSA_id:072272 AY144222 beta clone LTUB05156 prokMSA_id:073187 AY144223 beta clone LTUB05556 prokMSA_id:069156 AY144225 beta clone LTUB06056 prokMSA_id:074467 AY144226 beta clone LTUB07756 prokMSA_id:069437 AY144227 beta clone LTUB08956 prokMSA_id:056143 AY144229 beta clone LTUB09156 prokMSA_id:076395 AY159159 MF_isolate_16 prokMSA_id:076945 AY159164 MF_isolate_28 prokMSA_id:081410 AY187472 clone SB144 prokMSA_id:082098 AY187481 clone SC18 prokMSA_id:081761 AY192030 beta clone G13-GM4R prokMSA_id:080145 AY193015 clone SRE1 prokMSA_id:084405 AY221063 clone CCM4a prokMSA_id:084188 AY253428 clone AC3 prokMSA_id:086393 AY253437 clone HC4 prokMSA_id:083876 AY256623 DGGE band B2R-15 prokMSA_id:083256 AY256624 DGGE band S4-8 prokMSA_id:085573 AY256626 DGGE band S4-16 prokMSA_id:085628 AY256627 DGGE band S4-15 prokMSA_id:085480 AY267500 Alcaligenes sp. 4CBU prokMSA_id:082808 AY267501 Alcaligenes sp. 4CBAI3 prokMSA_id:086412 AY267502 Alcaligenes sp. 4CBV prokMSA_id:087156 AY269194 Pseudomonas putida strain TERI 7008 prokMSA_id:086750 AY269196 Acinetobacter baumannii strain TERI 7010 prokMSA_id:087487 AY269198 Acinetobacter baumannii strain TERI 7013 prokMSA_id:086926 AY269214 Pseudomonas putida strain TERI 1004 prokMSA_id:088043 AY269216 Achromobacter xylosoxidans subsp. xylosoxidans strain TERI 1006 prokMSA_id:087912 AY269217 Streptosporangium sp. TERI 1007 prokMSA_id:087411 AY269219 Achromobacter xylosoxidans subsp. xylosoxidans strain TERI 1009 prokMSA_id:087896 AY269220 Achromobacter xylosoxidans subsp. xylosoxidans strain TERI 1010 prokMSA_id:087276 AY269231 Achromobacter xylosoxidans subsp. xylosoxidans strain TERI 1024 prokMSA_id:087242 AY269232 Achromobacter piechaudii prokMSA_id:087390 AY269234 Achromobacter xylosoxidans subsp. xylosoxidans strain TERI 1029 prokMSA_id:087270 AY269235 Alcaligenes sp. TERI 1030 prokMSA_id:087021 AY269240 Pseudomonas putida strain TERI 6005 prokMSA_id:090369 AY296718 Alcaligenes sp. J prokMSA_id:088797 AY311810 Dpcom111 prokMSA_id:089156 AY317114 BAL59 prokMSA_id:089601 AY321978 Achromobacter sp. PN9 prokMSA_id:088488 AY321981 Achromobacter xylosoxidans strain PN3 prokMSA_id:093582 AY357956 beta cEV13 prokMSA_id:006862 M22508 Alcaligenes faecalis subsp. faecalis ATCC 8750 . prokMSA_id:006868 M22509 Achromobacter xylosoxidans subsp. denitrificans ATCC 15173 . prokMSA_id:006861 U04947 Bordetella avium ATCC 35086 . prokMSA_id:006874 U04948 Bordetella bronchiseptica str. Dog 71 ATCC 19395 . prokMSA_id:006873 U12218 str. B0272. prokMSA_id:006884 U27852 clone pCON43. prokMSA_id:006885 U27854 clone pCON83. prokMSA_id:006855 U27855 clone pCON87. prokMSA_id:006894 U27859 clone pM10. prokMSA_id:027879 U35497 158r6 from Wisconsin agricultural soil prokMSA_id:017842 U63953 Alcaligenes sp. prokMSA_id:006865 U71008 Alcaligenes faecalis str. B3/I. prokMSA_id:006866 U71009 Alcaligenes faecalis str. C5/I. prokMSA_id:033004 U81719 clone vadinBE92 prokMSA_id:006844 X91521 clone K6. 2.28.2.9 ACIDOVORAX_GROUP 2217 seqs 2.28.2.9.1 STR.SBR1023 47 seqs 2.28.2.9.1.001 OTU 1 seq prokMSA_id:067275 AF495413 clone M03 2.28.2.9.1.999 poor quality 46 seqs prokMSA_id:023648 AF010086 prokMSA_id:044672 AF016533 HRS-20 prokMSA_id:023160 AF078179 Grassland soil clone saf1_107 prokMSA_id:025414 AF078206 Grassland soil clone saf1_303 prokMSA_id:041220 AF078228 Grassland soil clone saf2_111 prokMSA_id:048008 AF078240 Grassland soil clone saf2_205 prokMSA_id:044367 AF078250 Grassland soil clone saf2_217 prokMSA_id:050379 AF078253 Grassland soil clone saf2_220 prokMSA_id:019474 AF078259 Grassland soil clone saf2_410 prokMSA_id:019755 AF078289 Grassland soil clone saf3_023 prokMSA_id:026174 AF078382 Grassland soil clone sl2_522 prokMSA_id:041557 AF141424 gamma clone CR-PA27 prokMSA_id:038166 AF141532 gamma clone CRE-PA58 prokMSA_id:017984 AF141542 gamma clone CRE-PA74 prokMSA_id:056389 AF365819 clone BT60PA10BB2 prokMSA_id:075306 AF431355 gamma clone C31.06SM prokMSA_id:075759 AF431373 gamma clone C46.31PG prokMSA_id:031666 AJ005877 clone TRS20 prokMSA_id:021719 AJ233550 clone WR111 prokMSA_id:046141 AJ233555 clone WR176 prokMSA_id:049239 AJ233556 clone WR1100 prokMSA_id:045344 AJ292883 WR802 clone WR802 prokMSA_id:072618 AJ303333 SCBP-A3 prokMSA_id:073375 AJ416166 clone Sta0-34 prokMSA_id:061753 AJ416191 clone Sta1-38 prokMSA_id:057188 AJ518324 clone Neu2P1-57 prokMSA_id:057034 AJ518515 clone Qui2P2-75 prokMSA_id:019487 AY037586 soil clone S053 prokMSA_id:061533 AY043681 gamma clone NOW2.111WL prokMSA_id:061524 AY043692 gamma clone NOW2.ABWL prokMSA_id:061517 AY043701 gamma clone NOS7.156WL prokMSA_id:069609 AY144248 gamma clone LTUG03056 prokMSA_id:079989 AY193105 clone DA53 prokMSA_id:084902 AY214683 gamma clone SL2-2-C7R prokMSA_id:086513 AY214736 gamma clone BB-1-H3 prokMSA_id:085060 AY217478 gamma clone WCB153 prokMSA_id:091687 AY330232 gamma clone g13-A2 prokMSA_id:091065 AY330233 gamma clone g13-A5 prokMSA_id:091230 AY330234 gamma clone g13-A6 prokMSA_id:091418 AY330254 gamma clone g20-E1 prokMSA_id:091135 AY330258 gamma clone g20-E5 prokMSA_id:091981 AY330259 gamma clone g20-E7 prokMSA_id:095793 AY394644 gamma clone N8-11 prokMSA_id:096035 AY394648 gamma clone N11-7 prokMSA_id:095961 AY395125 clone C19R prokMSA_id:006895 X84467 str. SBR1023. 2.28.2.9.2 TMN.THERMOSULFATUS_SUBGROUP 15 seqs 2.28.2.9.2.003 OTU 6 seqs prokMSA_id:020114 AF387302 Thiomonas sp. Ynys1 prokMSA_id:034681 AF387303 Thiomonas sp. Ynys3 prokMSA_id:081582 AJ549218 Thiomonas sp. B1 isolate B1 prokMSA_id:082126 AJ549219 Thiomonas sp. B2 isolate B2 prokMSA_id:082391 AJ549220 Thiomonas sp. B3 isolate B3 prokMSA_id:066860 AY096153 clone F2-5 2.28.2.9.2.999 poor quality 9 seqs prokMSA_id:022759 AB058673 beta clone:Loihi---9 prokMSA_id:024772 AF460990 Thiomonas sp. b6 prokMSA_id:073354 AH001785 Thiobacillus perometabolis prokMSA_id:066873 AY096138 clone M2-27 prokMSA_id:091253 AY340848 isolate DGGE fragment SR_FBR_E7 prokMSA_id:006898 L05930 Octopus Spring microbial mat from Yellowstone NP clone N. prokMSA_id:006897 M79421 Thiomonas perometabolis ATCC 23370 . prokMSA_id:073027 M79422 Thiobacillus perometabolis prokMSA_id:006896 U27839 Thiomonas thermosulfata ATCC 51520 . 2.28.2.9.3 ENVIRONMENTAL_CLONE_SMK480 1 seq 2.28.2.9.3.999 poor quality 1 seq prokMSA_id:006899 X78649 clone SMK480. 2.28.2.9.4 ACIDOVORAX_SUBGROUP 1563 seqs 2.28.2.9.4.1 COM.TERRIGENA_SUBGROUP 271 seqs 2.28.2.9.4.1.001 OTU 2 seqs prokMSA_id:006939 X95839 str. T60. prokMSA_id:006940 Z93993 clone T60. 2.28.2.9.4.1.002 OTU 2 seqs prokMSA_id:064875 AJ412688 Brachymonas denitrificans strain B prokMSA_id:006938 D14320 Brachymonas denitrificans str. AS-P1 JCM 9216 . 2.28.2.9.4.1.003 OTU 5 seqs prokMSA_id:006936 AB021418 Comamonas terrigena IAM 12052. prokMSA_id:006928 AF078772 Comamonas terrigena str. IMI 359870. prokMSA_id:017652 AJ420326 Comamonas terrigena strain DSM 7099 prokMSA_id:066691 AJ430342 Comamonas terrigena strain LMG 1253T prokMSA_id:066690 AJ430343 Comamonas terrigena strain LMG 1249 2.28.2.9.4.1.004 OTU 6 seqs prokMSA_id:006930 AB021345 str. rM10. prokMSA_id:006931 AB021347 str. rM12. prokMSA_id:006932 AB021357 str. rA6. prokMSA_id:006933 AB021358 str. rA7. prokMSA_id:006934 AB021359 str. rA8. prokMSA_id:006935 AB021362 str. rA11. 2.28.2.9.4.1.005 OTU 1 seq prokMSA_id:006929 AF125205 clone F061. 2.28.2.9.4.1.006 OTU 24 seqs prokMSA_id:006926 AB007996 Comamonas testosteroni str. MBIC3840. prokMSA_id:006927 AB007997 Comamonas testosteroni str. MBIC3841. prokMSA_id:023431 AB064318 Comamonas testosteroni prokMSA_id:017736 AB066235 Comamonas sp. PJ111 prokMSA_id:084751 AB109750 Comamonas testosteroni prokMSA_id:084191 AB109751 Comamonas testosteroni prokMSA_id:022861 AF172067 Comamonas testosteroni prokMSA_id:074857 AF320567 Comamonas sp. prokMSA_id:032915 AF336312 Comamonas testosteroni strain SMCC B329 prokMSA_id:029690 AF408328 Comamonas sp. clone KL-27-1-15 prokMSA_id:069635 AF434169 Comamonas sp. AV1A prokMSA_id:071872 AF501880 Comamonas testosteroni strain SMCC B0589 prokMSA_id:066754 AF501881 Comamonas sp. SMCC B0630 prokMSA_id:064241 AF519533 Comamonas testosteroni isolate Q10 prokMSA_id:062423 AF529091 beta clone FTL2 prokMSA_id:091909 AF532871 Comamonas testosteroni prokMSA_id:071738 AF538933 Comamonas testosteroni WDL7 prokMSA_id:041470 AY050494 Comamonas testosteroni SB2 prokMSA_id:081603 AY192038 beta clone G59-GM4R prokMSA_id:084537 AY247415 Comamonas testosteroni strain NCIMB 10643 prokMSA_id:087769 AY291591 Comamonas testosteroni strain CNB1 prokMSA_id:022366 D87101 Comamonas testosteroni prokMSA_id:036587 E34470 and method detecting Ps. Alcaligenes KB2 strain by using in the prokMSA_id:006912 M11224 Comamonas testosteroni str. RH 1104 ATCC 11996 . 2.28.2.9.4.1.009 OTU 7 seqs prokMSA_id:006914 AB021337 str. rM2. prokMSA_id:006915 AB021338 str. rM3. prokMSA_id:006917 AB021342 str. rM7. prokMSA_id:006918 AB021346 str. rM11. prokMSA_id:006919 AB021348 str. rM13. prokMSA_id:006920 AB021353 str. rA1. prokMSA_id:006921 AB021355 str. rA3. 2.28.2.9.4.1.010 OTU 1 seq prokMSA_id:006916 AB021341 str. rM6. 2.28.2.9.4.1.011 OTU 2 seqs prokMSA_id:006913 AB021331 str. rJ13. prokMSA_id:059346 AF502222 clone HP1B33 2.28.2.9.4.1.012 OTU 34 seqs prokMSA_id:006909 AB015567 str. BD5-11. prokMSA_id:006908 AB020186 Delftia acidovorans str. MBIC1305 IFO 13582. prokMSA_id:006904 AB021417 Comamonas acidovorans IAM 12409. prokMSA_id:038068 AB074256 Delftia acidovorans prokMSA_id:078243 AB074610 beta clone:APe4_31 prokMSA_id:026640 AB075017 Delftia sp. T7 prokMSA_id:006901 AF078774 Delftia acidovorans str. Stanier 14 ACM 489 . prokMSA_id:006903 AF142877 Delftia DEEP-3. prokMSA_id:006905 AF149849 Comamonas MC1 str. MC1. prokMSA_id:072520 AF181575 Comamonas cf. acidovorans prokMSA_id:023283 AF210313 Aniline-degrading HY99 complete prokMSA_id:036246 AF410435 Delftia acidovorans prokMSA_id:066329 AF506990 Br-z13 prokMSA_id:066327 AF506991 Br-z30 prokMSA_id:066326 AF506992 Br-24 prokMSA_id:062994 AF526915 Delftia acidovorans strain 30v3 rrn prokMSA_id:056616 AF529108 beta clone FTL247 prokMSA_id:061830 AF529333 beta clone CLi36 prokMSA_id:061813 AF529351 beta clone CLs74 prokMSA_id:072360 AF538930 Delftia acidovorans WDL34 prokMSA_id:006902 AJ002803 Comamonas sp. str. 158. prokMSA_id:043605 AJ237966 Delftia sp. EK3 isolate EK3 prokMSA_id:048209 AJ295350 Rape rhizosphere cse003 prokMSA_id:048031 AJ295450 Rape rhizosphere tsb068 prokMSA_id:022083 AJ295454 Rape rhizosphere tsb077 prokMSA_id:058766 AJ508611 Delftia acidovorans isolate MBRG 4.16 prokMSA_id:076524 AJ534658 beta clone S15A-MN36 prokMSA_id:037071 AY052781 Delftia sp. AN3 prokMSA_id:059915 AY133078 beta clone ccs4 prokMSA_id:059908 AY133088 beta clone ccslm224 prokMSA_id:088347 AY302438 Delftia acidovorans strain R4 prokMSA_id:093731 AY367007 Delftia acidovorans isolate Eh2-1 prokMSA_id:094273 AY367024 Delftia acidovorans isolate As1-2 prokMSA_id:093217 AY367028 Delftia acidovorans isolate As3-4 2.28.2.9.4.1.013 OTU 1 seq prokMSA_id:017020 AF432141 TM7 phylum sp. oral clone FR058 2.28.2.9.4.1.014 OTU 10 seqs prokMSA_id:058512 AB072708 clone:pHAuB-Q5 prokMSA_id:042211 AB076865 beta clone:OS1L-7 prokMSA_id:022960 AB076867 beta clone:OS1L-10 prokMSA_id:020196 AB076868 beta clone:OS1L-11 prokMSA_id:035749 AB076869 beta clone:OS1L-16 prokMSA_id:018248 AF233876 Comamonas denitrificans strain 110 prokMSA_id:023191 AF233877 Comamonas denitrificans strain 123 prokMSA_id:040166 AF233878 Comamonas denitrificans strain 2.99g prokMSA_id:074723 AF233879 Comamonas denitrificans strain 5.38g prokMSA_id:073055 AF233880 Comamonas denitrificans strain P17 2.28.2.9.4.1.015 OTU 1 seq prokMSA_id:018497 AB066239 Comamonas sp. PJ913 2.28.2.9.4.1.016 OTU 2 seqs prokMSA_id:039805 AF385500 TM7 phylum sp. oral clone EW055 prokMSA_id:059570 AY134895 TM7 phylum sp. oral clone EW086 2.28.2.9.4.1.018 OTU 2 seqs prokMSA_id:021007 AJ318129 beta clone BIfdi44 prokMSA_id:072721 AJ318132 beta clone BIfdii18 2.28.2.9.4.1.019 OTU 2 seqs prokMSA_id:026921 AF269019 NoosaAW33 prokMSA_id:023049 AF269024 NoosaAW70 2.28.2.9.4.1.021 OTU 14 seqs prokMSA_id:050525 AB076850 Comamonas sp. NSP5 prokMSA_id:030256 AB076852 Comamonas sp. NSP8 prokMSA_id:043597 AB076854 Comamonas sp. OS-14 prokMSA_id:043658 AB076862 beta clone:OS1L-4 prokMSA_id:025859 AB076870 beta clone:OS1L-18 prokMSA_id:024115 AB076871 beta clone:OS1L-19 prokMSA_id:028287 AB076872 beta clone:OS1L-20 prokMSA_id:038694 AB076877 beta clone:TSL-1-3 prokMSA_id:035616 AB076878 beta clone:TSL-1-5 prokMSA_id:024701 AB076879 beta clone:TSL-1-7 prokMSA_id:032764 AB076880 beta clone:TSL-2-2 prokMSA_id:019472 AB076881 beta clone:TSL-2-3 prokMSA_id:037507 AB076882 beta clone:TSL-2-9 prokMSA_id:020893 AB076885 beta clone:TSL-23 2.28.2.9.4.1.022 OTU 1 seq prokMSA_id:030714 AB066237 Comamonas sp. PJ712 2.28.2.9.4.1.023 OTU 1 seq prokMSA_id:058604 AY134850 Comamonas sp. SFCD1 2.28.2.9.4.1.024 OTU 1 seq prokMSA_id:033606 AF419661 a2b013 2.28.2.9.4.1.025 OTU 1 seq prokMSA_id:034261 AJ318200 clone BIxi1 2.28.2.9.4.1.026 OTU 1 seq prokMSA_id:035840 AF418949 clone HTBB6 2.28.2.9.4.1.029 OTU 1 seq prokMSA_id:038824 AJ251577 Comamonas sp. strain 23310 2.28.2.9.4.1.030 OTU 1 seq prokMSA_id:052438 Z93983 2.28.2.9.4.1.031 OTU 1 seq prokMSA_id:072347 AY005446 sp. oral clone BE109 2.28.2.9.4.1.032 OTU 3 seqs prokMSA_id:064300 AB086632 Lampropedia hyalina prokMSA_id:096749 AB089485 Lampropedia hyalina complete strain:IAM 14890 prokMSA_id:084310 AB092691 Lampropedia hyalina 2.28.2.9.4.1.033 OTU 1 seq prokMSA_id:066328 AF506989 Br-z39 2.28.2.9.4.1.036 OTU 2 seqs prokMSA_id:067295 AF495392 clone F10.22 prokMSA_id:067263 AF495425 clone F13.29 2.28.2.9.4.1.038 OTU 4 seqs prokMSA_id:006925 AF078773 Comamonas 12022 str. 12022. prokMSA_id:067639 AF275377 Comamonas sp. KCTC 12005 prokMSA_id:091652 AF532869 Comamonas sp. D1 prokMSA_id:088473 AJ550282 Comamonas sp. TK41 isolate TK41 2.28.2.9.4.1.039 OTU 1 seq prokMSA_id:068619 AY081982 clone KRA30+15 2.28.2.9.4.1.040 OTU 1 seq prokMSA_id:068621 AY081980 clone KRA30+12 2.28.2.9.4.1.041 OTU 1 seq prokMSA_id:074399 AF050598 WCHB1-60 2.28.2.9.4.1.042 OTU 1 seq prokMSA_id:081013 AB094870 clone:OHKB6.39 2.28.2.9.4.1.043 OTU 1 seq prokMSA_id:081147 AY187544 clone SD164 2.28.2.9.4.1.045 OTU 10 seqs prokMSA_id:006924 AF188304 Comamonas D22 str. D22. prokMSA_id:045232 AF351233 beta clone 4-70 prokMSA_id:036914 AF408327 Comamonas sp. clone KL-11-1-9 prokMSA_id:073664 AJ430344 Comamonas terrigena strain LMG 2370T prokMSA_id:066688 AJ430345 Comamonas terrigena strain LMG 6112 prokMSA_id:066687 AJ430346 Comamonas terrigena strain LMG 5937 prokMSA_id:066686 AJ430347 Comamonas terrigena strain LMG 3475T prokMSA_id:066684 AJ430348 Comamonas terrigena strain LMG 5323 prokMSA_id:081273 AY187532 clone SD108 prokMSA_id:085602 AY258065 Acidovorax sp. 98-63833 2.28.2.9.4.1.046 OTU 1 seq prokMSA_id:081309 AY187522 clone SD79 2.28.2.9.4.1.047 OTU 1 seq prokMSA_id:081976 AY187499 clone SC106 2.28.2.9.4.1.048 OTU 1 seq prokMSA_id:082183 AY187462 clone SB117 2.28.2.9.4.1.049 OTU 1 seq prokMSA_id:082258 AY187525 clone SD85 2.28.2.9.4.1.050 OTU 1 seq prokMSA_id:082305 AY187423 clone SA67 2.28.2.9.4.1.051 OTU 1 seq prokMSA_id:084773 AY239553 clone CARB_ER1_6 2.28.2.9.4.1.052 OTU 1 seq prokMSA_id:089256 AY327233 clone ZB42 2.28.2.9.4.1.053 OTU 1 seq prokMSA_id:093723 AY367031 Delftia acidovorans isolate As1-6 2.28.2.9.4.1.054 OTU 1 seq prokMSA_id:094100 AY367033 Comamonas testosteroni isolate As2-4 2.28.2.9.4.1.999 poor quality 113 seqs prokMSA_id:044479 AB001048 gamma prokMSA_id:063065 AB088541 Comamonas sp. HBL6 prokMSA_id:091656 AB101544 Brachymonas sp. GF1 prokMSA_id:091094 AB101547 Brachymonas sp. GF4 prokMSA_id:091708 AB101549 Brachymonas sp. GF6 prokMSA_id:091336 AB101550 Brachymonas sp. GF7 prokMSA_id:091759 AB101551 Brachymonas sp. GF8 prokMSA_id:091961 AB101554 Brachymonas sp. GF11 prokMSA_id:091932 AB101556 Brachymonas sp. GF13 prokMSA_id:091128 AB101561 Brachymonas sp. GF18 prokMSA_id:091171 AB101569 Brachymonas sp. GF26 prokMSA_id:091435 AB101571 Brachymonas sp. GF28 prokMSA_id:006923 AF047638 clone TRA3-15. prokMSA_id:074433 AF059760 HdEPI2 prokMSA_id:037659 AF090553 BHA17 prokMSA_id:025748 AF106603 Comamonas sp. BL217-3 prokMSA_id:052739 AF106609 Delftia acidovorans prokMSA_id:049105 AF123317 Comamonas testosteroni prokMSA_id:045993 AF181927 clone 23d/6 prokMSA_id:043781 AF183155 Soil isolate KBS-LC2 prokMSA_id:050570 AF211217 rumen 5cARRO prokMSA_id:028000 AF226264 maize root Zmrc89 prokMSA_id:023536 AF274316 Delftia sp. JK-2 prokMSA_id:035907 AF320566 Comamonas sp. No.5 prokMSA_id:074507 AF320569 Comamonas sp. prokMSA_id:028422 AF332282 clone C12-21 prokMSA_id:032100 AF345907 Comamonas testosteroni prokMSA_id:068273 AF365443 clone BM89MF1BA5 prokMSA_id:024124 AF384190 Aquaspirillum sp. TG27 prokMSA_id:028194 AF390911 clone ICBTC9 prokMSA_id:026116 AF390915 clone ICBTF8 prokMSA_id:037073 AF390916 clone ICBTF7 prokMSA_id:032504 AF390917 clone ICBBC5 prokMSA_id:026705 AF390918 clone ICBBA10 prokMSA_id:032618 AF390947 clone TFBMF4 prokMSA_id:031374 AF406670 Delftia sp. A21 strain A21 prokMSA_id:027211 AF406689 Delftia acidovorans strain B22 prokMSA_id:026505 AF428645 clone CRD99-67 prokMSA_id:073333 AF457647 Delftia acidovorans strain MA14 prokMSA_id:026599 AF457648 Delftia acidovorans strain MA22 prokMSA_id:073118 AF457649 Delftia acidovorans strain MA34 prokMSA_id:071997 AF457654 Comamonas testosteroni strain TB1 prokMSA_id:074160 AF457655 Comamonas testosteroni strain TB30 prokMSA_id:026736 AF473950 beta A190-11 prokMSA_id:077452 AF477803 beta clone AGCM38 prokMSA_id:077504 AF477806 beta clone AGCY32 prokMSA_id:068710 AF484054 clone p29 prokMSA_id:067460 AF493264 clone pHS47 prokMSA_id:067070 AF499396 clone JCL1-41 prokMSA_id:066147 AF509481 Delftia sp. MF13 prokMSA_id:059463 AF541935 Delftia sp. MF3 prokMSA_id:058260 AF544642 beta DGGE gel band H11-4 prokMSA_id:069101 AF544913 beta clone 1-6-4 prokMSA_id:069724 AF544917 beta clone 2-6-2 prokMSA_id:073142 AF544922 beta clone 3-6-2 prokMSA_id:069612 AF544927 beta clone 4-6-2 prokMSA_id:037187 AJ005538 beta clone Clo 95 prokMSA_id:033920 AJ005540 beta clone Clo 115 prokMSA_id:039853 AJ005650 beta isolate Clo 41 prokMSA_id:034800 AJ237533 Comamonas sp. E52 prokMSA_id:020259 AJ237534 Comamonas sp. E53 prokMSA_id:028634 AJ237535 Comamonas sp. E54 prokMSA_id:022279 AJ237536 Comamonas sp. E55 prokMSA_id:040344 AJ237537 Comamonas sp. E56 prokMSA_id:073800 AJ286735 Comamonas sp. isolate DGGE bands L & l prokMSA_id:049495 AJ295356 Rape rhizosphere cse022 prokMSA_id:027084 AJ295361 Rape rhizosphere cse038 prokMSA_id:041450 AJ295366 Rape rhizosphere cse046 prokMSA_id:017018 AJ295372 Rape rhizosphere cse065 prokMSA_id:037978 AJ295376 Rape rhizosphere cse078 prokMSA_id:028746 AJ295378 Rape rhizosphere cse085 prokMSA_id:039023 AJ295379 Rape rhizosphere cse085 prokMSA_id:052371 AJ295380 Rape rhizosphere cse088 prokMSA_id:070566 AJ295402 Rape rhizosphere M9048 prokMSA_id:022821 AJ295404 Rape rhizosphere M9051 prokMSA_id:033851 AJ295458 Rape rhizosphere tsb088 prokMSA_id:074249 AJ296591 DGGE band PSBAC-11 prokMSA_id:039561 AJ431314 clone 2_2 prokMSA_id:057536 AJ516044 Delftia acidovorans strain LE/66 prokMSA_id:057534 AJ516047 Delftia acidovorans strain B2/42 prokMSA_id:057413 AJ517861 clone E26.3 prokMSA_id:089264 AJ550274 Comamonas terrigena isolate TK17 prokMSA_id:089228 AJ550278 Delftia sp. TK31 isolate TK31 prokMSA_id:089468 AJ550280 Delftia sp. TK36 isolate TK36 prokMSA_id:017386 AY038506 beta clone CD1G2 prokMSA_id:039432 AY038508 clone CD1F5 prokMSA_id:066673 AY090115 Delftia sp. clone IAFDn90 prokMSA_id:060703 AY125951 Comamonas testosteroni ZD4-1 prokMSA_id:072694 AY145634 beta FL10C07 prokMSA_id:072242 AY145647 beta FL12B02 prokMSA_id:072884 AY145676 beta FL11A06 prokMSA_id:081405 AY187400 clone SA18 prokMSA_id:081212 AY187463 clone SB121 prokMSA_id:082390 AY187501 clone SD1 prokMSA_id:082049 AY187512 clone SD60 prokMSA_id:082035 AY187523 clone SD82 prokMSA_id:081080 AY187542 clone SD145 prokMSA_id:080487 AY192323 beta clone S3-3A prokMSA_id:082229 AY193938 clone SB102 prokMSA_id:083507 AY231301 clone ER1_1 prokMSA_id:083396 AY256591 DGGE band B1-6 prokMSA_id:090137 AY308841 Comamonas sp. 'starch-degrading 3' prokMSA_id:093957 AY357966 beta cEV24 prokMSA_id:093681 AY367038 Comamonas testosteroni isolate Cs1-5 prokMSA_id:098111 AY394627 Delftia sp. clone W1-6 prokMSA_id:095949 AY394628 Delftia sp. clone W2-28 prokMSA_id:006900 U09776 clone JAP403. prokMSA_id:006911 X78638 clone SMK198. prokMSA_id:006906 X86627 str. GR-06. prokMSA_id:006907 X86630 str. GR-10. prokMSA_id:006910 X91467 clone A44t. prokMSA_id:006937 Y13421 str. MR5D. prokMSA_id:006922 Z93985 clone T54. 2.28.2.9.4.2 HGP.FLAVA_SUBGROUP 34 seqs 2.28.2.9.4.2.002 OTU 2 seqs prokMSA_id:069506 AY145630 beta FL10A05 prokMSA_id:006944 U46749 str. OS isolate ac-15. 2.28.2.9.4.2.003 OTU 1 seq prokMSA_id:025910 AF388888 clone GOBB3-CL120 2.28.2.9.4.2.004 OTU 1 seq prokMSA_id:051698 U70707 beta OM180 2.28.2.9.4.2.006 OTU 10 seqs prokMSA_id:006942 AB021420 Hydrogenophaga flava DSM 619. prokMSA_id:006943 AF078770 Hydrogenophaga pseudoflava str. GA3 ATCC 33668 . prokMSA_id:006941 AF078771 Hydrogenophaga flava CCUG 1658 . prokMSA_id:031787 AF150689 Elbe River snow isolate Iso11 prokMSA_id:073090 AF234720 sludge A6b prokMSA_id:006945 AJ009497 clone SJA-155. prokMSA_id:047512 AJ420327 Hydrogenophaga pseudoflava strain DSM 1034 prokMSA_id:030654 AJ420328 Hydrogenophaga flava strain DSM 619 prokMSA_id:076529 AY168753 Hydrogenophaga sp. ATCC BAA-306 prokMSA_id:079111 AY187908 clone O4 2.28.2.9.4.2.007 OTU 1 seq prokMSA_id:094637 AY370657 2.28.2.9.4.2.999 poor quality 19 seqs prokMSA_id:053140 AF078227 Grassland soil clone saf2_110 prokMSA_id:044620 AF097773 clone 29517 prokMSA_id:069896 AF097778 clone 29522 prokMSA_id:028130 AF428759 clone CR98-5-29 prokMSA_id:036017 AF428776 clone CR98-5-46 prokMSA_id:037788 AF442007 beta clone CD12D9 prokMSA_id:035398 AF446317 beta FL04H01 prokMSA_id:056151 AF486683 clone W6-38-SC1-104 prokMSA_id:056360 AF493063 Comamonadaceae clone GOBB3-CL269 prokMSA_id:067601 AF493065 Comamonadaceae clone GOBB3-CL296 prokMSA_id:083741 AY092357 clone BM12 prokMSA_id:084486 AY092359 clone BI67 prokMSA_id:085438 AY092360 clone BI72 prokMSA_id:083285 AY092361 clone BI126 prokMSA_id:076832 AY168754 Hydrogenophaga sp. ATCC BAA-305 prokMSA_id:076273 AY168755 Hydrogenophaga sp. ATCC BAA-304 prokMSA_id:081201 AY187503 clone SD6 prokMSA_id:091258 AY337043 beta clone 3b-EST prokMSA_id:091400 AY337044 beta clone 3c-EST 2.28.2.9.4.3 HGP.PALLERONII_SUBGROUP 93 seqs 2.28.2.9.4.3.004 OTU 2 seqs prokMSA_id:006950 AB021327 str. rJ9. prokMSA_id:006951 AB021349 str. rM14. 2.28.2.9.4.3.010 OTU 45 seqs prokMSA_id:006952 AB021387 Pseudomonas spinosa ATCC 14606. prokMSA_id:077847 AB077038 Pseudomonas spinosa prokMSA_id:006953 AF019037 Hydrogenophaga DSM 5680 str. S1. prokMSA_id:006949 AF019073 Hydrogenophaga palleronii str. S1 DSM 63 . prokMSA_id:006946 AF078768 Hydrogenophaga taeniospiralis ATCC 49743 . prokMSA_id:006948 AF078769 Hydrogenophaga palleronii str. Stanier 362t1 CCUG 20334 . prokMSA_id:021592 AF280845 mle1-6 prokMSA_id:049168 AF422578 clone t003 prokMSA_id:023104 AF422612 clone t042 prokMSA_id:041692 AF445679 beta clone SM1E01 prokMSA_id:018413 AF445688 beta clone SM1E11 prokMSA_id:066294 AF506046 Hydrogenophaga sp. LCSAOTU22 prokMSA_id:089124 AF523001 Hydrogenophaga sp. clone B-22 prokMSA_id:089504 AF523009 Hydrogenophaga sp. clone H-12 prokMSA_id:088908 AF523010 Hydrogenophaga sp. clone G-1 prokMSA_id:090052 AF523030 Hydrogenophaga sp. clone H-3 prokMSA_id:088794 AF523047 Hydrogenophaga sp. clone H-9 prokMSA_id:088537 AF523049 Hydrogenophaga sp. clone J-11 prokMSA_id:089755 AF523061 Hydrogenophaga sp. clone C-16 prokMSA_id:090619 AF523062 Hydrogenophaga sp. clone D-9 prokMSA_id:088381 AF523063 Hydrogenophaga sp. clone D-10 prokMSA_id:088540 AF523065 Hydrogenophaga sp. clone C-3 prokMSA_id:090641 AF523066 Hydrogenophaga sp. clone C-5 prokMSA_id:089209 AF523068 Hydrogenophaga sp. clone D-13 prokMSA_id:088751 AF523069 Hydrogenophaga sp. clone D-18 prokMSA_id:061826 AF529338 beta clone CLi60 prokMSA_id:036603 AJ422157 beta clone Spb54 prokMSA_id:031751 AJ422164 beta clone Spb150 prokMSA_id:051945 AJ422167 beta clone Spb223 prokMSA_id:040546 AJ422170 beta clone Spb256 prokMSA_id:045634 AJ422171 beta clone Spb266 prokMSA_id:084317 AJ441011 Antarctic R-9284 strain R-9284 prokMSA_id:076513 AJ532685 beta clone Gitt-KF-42 prokMSA_id:076160 AJ532687 beta clone Gitt-KF-139 prokMSA_id:094008 AJ582189 beta- clone Gitt-GS-98 prokMSA_id:093226 AJ582191 beta- clone Gitt-GS-139 prokMSA_id:093967 AJ582192 beta- clone Gitt-GS-145 prokMSA_id:097176 AJ585992 Hydrogenophaga atypica strain BSB 41.8T prokMSA_id:095631 AJ585993 Hydrogenophaga defluvii strain BSB 9.5T prokMSA_id:021895 AY027497 Arsenite-oxidizing NT-14 prokMSA_id:042753 AY027498 Arsenite-oxidizing NT-5 prokMSA_id:040028 AY027499 Arsenite-oxidizing NT-6 prokMSA_id:059911 AY133083 beta clone ccslm2112 prokMSA_id:070202 AY145572 Comamonadaceae BP-6 prokMSA_id:085508 AY250107 clone 96 2.28.2.9.4.3.011 OTU 1 seq prokMSA_id:056021 AF323258 Gram negative B3P-1 2.28.2.9.4.3.012 OTU 1 seq prokMSA_id:066110 AB074942 spirochete clone:KU13 2.28.2.9.4.3.013 OTU 1 seq prokMSA_id:078049 AB077037 Macromonas bipunctata 2.28.2.9.4.3.014 OTU 1 seq prokMSA_id:081562 AY218562 clone KD1-44 2.28.2.9.4.3.015 OTU 1 seq prokMSA_id:082776 AJ440995 Antarctic R-8890 strain R-8890 2.28.2.9.4.3.999 poor quality 41 seqs prokMSA_id:027499 AB047128 ONG2 prokMSA_id:031510 AB047129 ONG2' prokMSA_id:034598 AF141595 beta clone CRO-FL17 prokMSA_id:067763 AF423360 beta isolate DGGE band W4 prokMSA_id:040659 AF428641 clone CRD99-63 prokMSA_id:036553 AF428817 clone CR98-24-11 prokMSA_id:041272 AF429229 clone CR99-2-43 prokMSA_id:068492 AF486799 clone E5-46-HS3P-325 prokMSA_id:088425 AF523000 Hydrogenophaga sp. clone B-3 prokMSA_id:090702 AF523011 Hydrogenophaga sp. clone B-9 prokMSA_id:088878 AF523021 Hydrogenophaga sp. clone B-20 prokMSA_id:090602 AF523037 Hydrogenophaga sp. clone B-6 prokMSA_id:088200 AF523048 Hydrogenophaga sp. clone D-17 prokMSA_id:088128 AF523050 Hydrogenophaga sp. clone D-20 prokMSA_id:090139 AF523054 Hydrogenophaga sp. clone B-11 prokMSA_id:090418 AF523057 Hydrogenophaga sp. clone B-15 prokMSA_id:088585 AF523058 Hydrogenophaga sp. clone B-10 prokMSA_id:088950 AF523059 Hydrogenophaga sp. clone B-18 prokMSA_id:090185 AF523060 Hydrogenophaga sp. clone B-19 prokMSA_id:090180 AF523064 Hydrogenophaga sp. clone D-4 prokMSA_id:090212 AF523067 Hydrogenophaga sp. clone C-1 prokMSA_id:071774 AF530277 Hydrogenophaga sp. S7-11 prokMSA_id:069369 AF531021 Beta Mso3 prokMSA_id:059426 AF540842 clone I10-2 prokMSA_id:044711 AJ239999 beta strain DGGE band CIBAC-12 prokMSA_id:034135 AJ303332 SCBP-A2 prokMSA_id:018656 AJ303334 SCBP-A4 prokMSA_id:063019 AY122605 clone OSS-41 prokMSA_id:072745 AY124463 S7-28 prokMSA_id:062223 AY124487 S7-16 prokMSA_id:069488 AY144221 beta clone LTUB04914 prokMSA_id:069568 AY146668 Beta K17 prokMSA_id:096834 AY147378 beta Wu32 prokMSA_id:097488 AY147382 beta Wu44 prokMSA_id:095841 AY147388 beta Wd22 prokMSA_id:096062 AY147398 beta Wd43 prokMSA_id:081970 AY187403 clone SA26 prokMSA_id:081532 AY187494 clone SC89 prokMSA_id:084625 AY263735 beta clone FBR21 prokMSA_id:050344 Y12794 strain MR17H prokMSA_id:006947 Z69276 clone JN11de. 2.28.2.9.4.4 STR.T41_SUBGROUP 49 seqs 2.28.2.9.4.4.001 OTU 1 seq prokMSA_id:006973 Z93978 clone T35. 2.28.2.9.4.4.002 OTU 1 seq prokMSA_id:006972 Z93977 clone T47. 2.28.2.9.4.4.004 OTU 1 seq prokMSA_id:006969 Z93970 clone T96. 2.28.2.9.4.4.005 OTU 2 seqs prokMSA_id:006962 AF097797 clone 19523. prokMSA_id:006955 AF110006 str. mz1L. 2.28.2.9.4.4.006 OTU 1 seq prokMSA_id:006961 AF097794 clone 1952. 2.28.2.9.4.4.007 OTU 1 seq prokMSA_id:006959 Z93975 clone T98. 2.28.2.9.4.4.009 OTU 12 seqs prokMSA_id:066109 AB074944 beta clone:KB17 prokMSA_id:031610 AF351224 beta clone 36-111 prokMSA_id:090289 AF523053 Comamonadaceae clone B-23 prokMSA_id:006956 AJ001325 unnamed organism. prokMSA_id:006954 X95836 str. T25. prokMSA_id:006965 X95838 str. T41. prokMSA_id:006967 Z93968 clone T71. prokMSA_id:006968 Z93969 clone T83. prokMSA_id:006957 Z93971 clone T25. prokMSA_id:006958 Z93972 clone T19. prokMSA_id:006970 Z93973 clone T41. prokMSA_id:006971 Z93974 clone T70. 2.28.2.9.4.4.010 OTU 1 seq prokMSA_id:037285 AF320969 Lake Michigan sediment LMBGG1 2.28.2.9.4.4.011 OTU 1 seq prokMSA_id:081948 AY193943 clone SB114 2.28.2.9.4.4.012 OTU 1 seq prokMSA_id:082873 AY242713 soil clone Tc134-102 2.28.2.9.4.4.013 OTU 1 seq prokMSA_id:083475 AY250105 clone 77 2.28.2.9.4.4.014 OTU 1 seq prokMSA_id:089333 AJ565430 Hylemonella sp. WQH1 isolate WQH1 2.28.2.9.4.4.999 poor quality 25 seqs prokMSA_id:074456 AF097811 clone 49517 prokMSA_id:022849 AF428752 clone CR98-5-22 prokMSA_id:032622 AF429057 clone CR99-7-23 prokMSA_id:031972 AF429134 clone CR99-24-24 prokMSA_id:029064 AF429177 clone CR99-24-67 prokMSA_id:088831 AF523023 Comamonadaceae clone B-5 prokMSA_id:086160 AY092358 clone BI143 prokMSA_id:069546 AY145623 beta clone DC11-51-14 prokMSA_id:075414 AY157126 beta isolate HS-63 prokMSA_id:075637 AY168733 clone HC-10 prokMSA_id:081517 AY187414 clone SA49 prokMSA_id:081917 AY187470 clone SB140 prokMSA_id:081383 AY187474 clone SC1 prokMSA_id:081524 AY187475 clone SC4 prokMSA_id:082415 AY187509 clone SD32 prokMSA_id:079651 AY193024 clone WSB7 prokMSA_id:081288 AY193955 clone SC42 prokMSA_id:081564 AY193972 clone SD3 prokMSA_id:081587 AY193974 clone SD34 prokMSA_id:081780 AY193977 clone SD83 prokMSA_id:084899 AY242712 soil clone Tc133-101 prokMSA_id:006964 X97590 str. T19. prokMSA_id:006963 Z69266 clone JN1af. prokMSA_id:006966 Z93963 clone T49. prokMSA_id:006960 Z93976 clone T90. 2.28.2.9.4.5 AQSP.GRACILE 10 seqs 2.28.2.9.4.5.001 OTU 6 seqs prokMSA_id:006974 AF078753 Aquaspirillum gracile str. D4 ATCC 19624 . prokMSA_id:089292 AJ565423 Hylemonella gracilis isolate WQP1 prokMSA_id:089970 AJ565424 Hylemonella gracilis isolate WQT2 prokMSA_id:088904 AJ565425 Hylemonella gracilis isolate WQM2 prokMSA_id:090681 AJ565426 Hylemonella gracilis isolate MWH-Mo30.9.Ko2 prokMSA_id:089311 AJ565429 Hylemonella gracilis isolate MWH-7W8 2.28.2.9.4.5.999 poor quality 4 seqs prokMSA_id:039683 AB001044 gamma prokMSA_id:090704 AJ565427 Hylemonella gracilis isolate MWH-Tang3W12 prokMSA_id:089330 AJ565428 Hylemonella gracilis isolate MWH-Tang4W16 prokMSA_id:098281 AY160867 clone COB P4-5 2.28.2.9.4.6 STR.BERLIN7_SUBGROUP 6 seqs 2.28.2.9.4.6.001 OTU 3 seqs prokMSA_id:006975 AF035053 unnamed organism. prokMSA_id:091935 AF509578 alpha prokMSA_id:091217 AF509579 beta 2.28.2.9.4.6.002 OTU 1 seq prokMSA_id:090543 AF443568 clone C-CF-23 2.28.2.9.4.6.999 poor quality 2 seqs prokMSA_id:006977 D26231 soil from paddy field clone PAD44. prokMSA_id:006976 X91173 clone G1. 2.28.2.9.4.7 STR.SBR2018 1 seq 2.28.2.9.4.7.999 poor quality 1 seq prokMSA_id:006978 X84562 str. SBR2018. 2.28.2.9.4.8 RHF.FERMENTANS_SUBGROUP 477 seqs 2.28.2.9.4.8.004 OTU 1 seq prokMSA_id:006999 Y11465 str. D8. 2.28.2.9.4.8.007 OTU 1 seq prokMSA_id:006994 AF173821 clone LB3-27. 2.28.2.9.4.8.008 OTU 1 seq prokMSA_id:006988 Z93955 clone T67. 2.28.2.9.4.8.009 OTU 1 seq prokMSA_id:006987 Z93954 clone T73. 2.28.2.9.4.8.010 OTU 2 seqs prokMSA_id:006980 D16211 Rhodoferax fermentans str. FR2. prokMSA_id:006979 D16212 Rhodoferax fermentans str. FR3. 2.28.2.9.4.8.018 OTU 1 seq prokMSA_id:021463 AY038710 clone TAF-A31 2.28.2.9.4.8.022 OTU 1 seq prokMSA_id:023857 AY013643 Banisveld landfill BVB72 2.28.2.9.4.8.027 OTU 2 seqs prokMSA_id:026103 AF316742 Crater Lake CL500-89 prokMSA_id:043083 AF418942 clone HTA10 2.28.2.9.4.8.030 OTU 1 seq prokMSA_id:028383 AF407392 clone RB9C1 2.28.2.9.4.8.047 OTU 1 seq prokMSA_id:040950 AF388886 beta clone GOBB3-CL308 2.28.2.9.4.8.049 OTU 23 seqs prokMSA_id:090350 AY328702 DSSD2 prokMSA_id:090313 AY328713 DSSD14 prokMSA_id:088897 AY328716 DSSD17 prokMSA_id:088790 AY328721 DSSD22 prokMSA_id:089424 AY328723 DSSD24 prokMSA_id:089022 AY328727 DSSD28 prokMSA_id:089666 AY328734 DSSD35 prokMSA_id:090243 AY328735 DSSD36 prokMSA_id:089066 AY328736 DSSD37 prokMSA_id:088170 AY328737 DSSD38 prokMSA_id:090625 AY328741 DSSD43 prokMSA_id:088303 AY328766 DSSD68 prokMSA_id:089279 AY328771 DSSD73 prokMSA_id:090056 AY328775 DSSD77 prokMSA_id:090742 AY328776 DSSD79 prokMSA_id:090034 AY328780 DSSD83 prokMSA_id:089461 AY328782 DSSD85 prokMSA_id:089678 AY328786 DSSD89 prokMSA_id:089752 AY328790 DSSD93 prokMSA_id:089840 AY328791 DSSD94 prokMSA_id:088667 AY328793 DSSD96 prokMSA_id:090735 AY328795 DSSD98 prokMSA_id:090164 AY328796 DSSD99 2.28.2.9.4.8.050 OTU 1 seq prokMSA_id:044278 AF296210 SY6-67 2.28.2.9.4.8.053 OTU 1 seq prokMSA_id:047515 AF388894 beta clone GOBB3-CL117 2.28.2.9.4.8.054 OTU 1 seq prokMSA_id:048541 AJ387871 oxSCC-26 2.28.2.9.4.8.059 OTU 1 seq prokMSA_id:050776 AF316738 Crater Lake CL120-116 2.28.2.9.4.8.060 OTU 1 seq prokMSA_id:051377 AF296222 SY6-105 2.28.2.9.4.8.061 OTU 1 seq prokMSA_id:053922 AF361203 beta clone 16 2.28.2.9.4.8.064 OTU 1 seq prokMSA_id:061765 AJ416187 clone Sta1-17 2.28.2.9.4.8.066 OTU 12 seqs prokMSA_id:006997 AB021390 Pseudomonas lanceolata ATCC 14669. prokMSA_id:052658 AF058383 clone MT11 prokMSA_id:033948 AF236005 Beta F1021 prokMSA_id:062986 AF526921 Aquaspirillum sp. clone T8-4 rrn prokMSA_id:062982 AF526926 Aquaspirillum sp. clone T5-4 rrn prokMSA_id:062979 AF526930 Aquaspirillum sp. clone T5-1 rrn prokMSA_id:050976 AJ387862 oxSCC-4 prokMSA_id:025979 AY050604 clone GOUTB19 prokMSA_id:064419 AY102906 clone BCM3S-26B prokMSA_id:078615 AY189630 Comamonadaceae clone EarCan103 prokMSA_id:088413 AY191346 Comamonadaceae isolate ODP1176A22X_18_B prokMSA_id:091930 AY345550 H21 2.28.2.9.4.8.067 OTU 1 seq prokMSA_id:062991 AF526920 Aquaspirillum sp. clone T8-7 rrn 2.28.2.9.4.8.068 OTU 1 seq prokMSA_id:065539 AY095426 yard-trimming-compost clone S-61 2.28.2.9.4.8.069 OTU 1 seq prokMSA_id:067244 AF495448 clone T02 2.28.2.9.4.8.070 OTU 1 seq prokMSA_id:067606 AF493060 beta clone GOBB3-CL166 2.28.2.9.4.8.073 OTU 1 seq prokMSA_id:074790 AF361202 beta clone 13 2.28.2.9.4.8.078 OTU 1 seq prokMSA_id:079288 AY187384 clone csbio160145 2.28.2.9.4.8.079 OTU 1 seq prokMSA_id:079659 AF468322 clone ARKMP-18 2.28.2.9.4.8.080 OTU 1 seq prokMSA_id:080304 AF468333 clone ARKMP-51 2.28.2.9.4.8.081 OTU 1 seq prokMSA_id:080572 AY192309 beta clone P2-10F 2.28.2.9.4.8.082 OTU 1 seq prokMSA_id:081130 AY218568 clone KD2-104 2.28.2.9.4.8.083 OTU 1 seq prokMSA_id:081491 AY187495 clone SC93 2.28.2.9.4.8.084 OTU 1 seq prokMSA_id:081902 AY218644 clone KD4-7 2.28.2.9.4.8.085 OTU 1 seq prokMSA_id:081969 AY218556 clone KD1-19 2.28.2.9.4.8.086 OTU 1 seq prokMSA_id:082193 AY218738 clone KD5-43 2.28.2.9.4.8.087 OTU 1 seq prokMSA_id:082267 AY187504 clone SD17 2.28.2.9.4.8.088 OTU 1 seq prokMSA_id:082366 AY218584 clone KD2-45 2.28.2.9.4.8.089 OTU 1 seq prokMSA_id:082385 AY218682 clone KD8-117 2.28.2.9.4.8.090 OTU 1 seq prokMSA_id:084139 AY242707 soil clone Tc119-C01 2.28.2.9.4.8.092 OTU 166 seqs prokMSA_id:050786 AB030614 epsilon 1016 prokMSA_id:006995 AF078756 Aquaspirillum delicatum str. 146 LMG 4328 . prokMSA_id:023325 AF231448 Humic substances enrichment clone Q47 prokMSA_id:051397 AF236004 Beta A0637 prokMSA_id:071257 AF289155 beta clone PRD01a007B prokMSA_id:072353 AF289161 beta clone PRD01b001B prokMSA_id:072406 AF289162 beta clone PRD01b002B prokMSA_id:074457 AF289164 beta clone PRD01b004B prokMSA_id:072267 AF289168 beta clone PRD01b008B prokMSA_id:072635 AF289169 beta clone PRD01b009B prokMSA_id:073570 AF289170 beta clone PRD01b010B prokMSA_id:053222 AF316733 Crater Lake CL0-90 prokMSA_id:019684 AF316734 Crater Lake CL0-99 prokMSA_id:052405 AF316736 Crater Lake CL0-119 prokMSA_id:050374 AF316737 Crater Lake CL120-28 prokMSA_id:029422 AF316740 Crater Lake CL500-45 prokMSA_id:050259 AF316743 Crater Lake CL500-105 prokMSA_id:025680 AF321032 Aquaspirillum sp. GOBB3-215 prokMSA_id:042804 AF336361 Beta Wuba72 prokMSA_id:044514 AF336363 Beta Wuba139 prokMSA_id:036075 AF361193 beta clone 08 prokMSA_id:073246 AF361201 beta clone 08 prokMSA_id:039868 AF407381 clone RB7C2 prokMSA_id:033769 AF407386 clone RB7C8 prokMSA_id:050642 AF407396 clone RB9C6 prokMSA_id:046854 AF407397 clone RB9C10 prokMSA_id:051248 AF407400 clone RA13C10 prokMSA_id:045524 AF407405 clone RA13C6 prokMSA_id:044459 AF407412 clone RB13C6 prokMSA_id:045498 AF407413 clone RB13C10 prokMSA_id:018901 AF407416 clone RB13C13 prokMSA_id:041290 AF407417 clone RB13C16 prokMSA_id:071289 AF408397 Beta JS666 prokMSA_id:075906 AF431322 beta clone S52.05PG prokMSA_id:075345 AF435948 Rhodoferax ferrireducens prokMSA_id:080790 AF468326 clone ARKMP-16 prokMSA_id:080703 AF468328 clone ARKMP-77 prokMSA_id:080799 AF468446 Arctic sea ice ARK10281 prokMSA_id:055273 AF493059 Aquaspirillum sp. clone GOBB3-CL104 prokMSA_id:088859 AF523002 Comamonadaceae clone C-8 prokMSA_id:088074 AF523007 Comamonadaceae clone C-25 prokMSA_id:089358 AF523012 Comamonadaceae clone C-22 prokMSA_id:090630 AF523013 Comamonadaceae clone C-6 prokMSA_id:088279 AF523014 Comamonadaceae clone B-16 prokMSA_id:090133 AF523015 Comamonadaceae clone D-7 prokMSA_id:089408 AF523018 Comamonadaceae clone C-4 prokMSA_id:089727 AF523019 Comamonadaceae clone B-21 prokMSA_id:088842 AF523026 Comamonadaceae clone C-2 prokMSA_id:090484 AF523028 Comamonadaceae clone C-18 prokMSA_id:088367 AF523029 Comamonadaceae clone G-5 prokMSA_id:088231 AF523031 Comamonadaceae clone H-2 prokMSA_id:089357 AF523032 Comamonadaceae clone C-13 prokMSA_id:090178 AF523038 Comamonadaceae clone H-5 prokMSA_id:089698 AF523039 Comamonadaceae clone J-13 prokMSA_id:089471 AF523040 Comamonadaceae clone B-4 prokMSA_id:090255 AF523041 Comamonadaceae clone B-1 prokMSA_id:090437 AF523045 Comamonadaceae prokMSA_id:088292 AF523046 Comamonadaceae clone C-15 prokMSA_id:089216 AF523051 Comamonadaceae clone C-14 prokMSA_id:089506 AF523052 Comamonadaceae clone G-2 prokMSA_id:062408 AF529106 beta clone FTL236 prokMSA_id:061807 AF529357 beta clone CLs95 prokMSA_id:082574 AF534428 beta clone TLM04/TLMdgge03 prokMSA_id:084443 AF534429 beta clone TLM05/TLMdgge10 prokMSA_id:073322 AJ007642 clone 25/4-32 prokMSA_id:006996 AJ009470 clone SJA-62. prokMSA_id:007006 AJ224987 str. from Lake Gossenkoellesee. prokMSA_id:070503 AJ289999 FukuN55 prokMSA_id:035165 AJ290026 GKS2-122 prokMSA_id:074539 AJ290030 GKS2-187 prokMSA_id:031995 AJ290040 GKS2-77 prokMSA_id:029558 AJ295499 rape rhizosphere wr0041 prokMSA_id:025053 AJ319679 clone FBR-E prokMSA_id:030938 AJ387866 oxSCC-13 prokMSA_id:037541 AJ387869 oxSCC-24 prokMSA_id:025106 AJ387873 oxSCC-30 prokMSA_id:022654 AJ387875 oxSCC-37 prokMSA_id:029366 AJ387876 oxSCC-39 prokMSA_id:049356 AJ387877 oxSCC-40 prokMSA_id:027768 AJ421912 beta clone Elb08 prokMSA_id:047614 AJ421913 beta clone Elb24 prokMSA_id:048766 AJ421917 beta clone Elb72 prokMSA_id:027175 AJ421919 beta clone Elb100 prokMSA_id:023897 AJ421921 beta clone Elb103 prokMSA_id:020305 AJ421927 beta clone Elb154 prokMSA_id:027087 AJ421929 beta clone Elb180 prokMSA_id:040698 AJ421935 beta clone Elb216 prokMSA_id:018730 AJ421938 beta clone Elb263 prokMSA_id:020142 AJ421940 beta clone Elb270 prokMSA_id:024121 AJ422160 beta clone Spb98 prokMSA_id:041361 AJ422162 beta clone Spb121 prokMSA_id:034909 AJ422168 beta clone Spb249 prokMSA_id:083945 AJ440986 Antarctic R-7724 strain R-7724 prokMSA_id:081424 AJ548907 Rhodoferax sp. clone BIOEST-18 prokMSA_id:081919 AJ548926 Rhodoferax sp. clone BIOEST-37 prokMSA_id:085627 AJ557835 clone B9 prokMSA_id:097133 AJ575698 beta clone NE83 prokMSA_id:098377 AJ575699 beta clone SW72 prokMSA_id:032083 AY050575 clone GOUTA1 prokMSA_id:073303 AY050594 clone GOUTB7 prokMSA_id:034176 AY050600 clone GOUTB17 prokMSA_id:065532 AY095435 yard-trimming-compost clone S-74 prokMSA_id:056377 AY133071 beta clone ccs221 prokMSA_id:059902 AY133093 beta clone ccslm256 prokMSA_id:060880 AY135896 clone SG2-9 prokMSA_id:060874 AY135899 clone SG2-21 prokMSA_id:055686 AY135919 clone SG2-113 prokMSA_id:073849 AY145569 Comamonadaceae BP-1 prokMSA_id:069400 AY145570 Comamonadaceae BP-1b prokMSA_id:073385 AY145573 Comamonadaceae BP-8 prokMSA_id:056031 AY145615 beta clone DC11-51-0 prokMSA_id:076891 AY166684 Coccomonas naphthalovorans prokMSA_id:075143 AY168739 clone HC-3 prokMSA_id:097547 AY186070 clone EA1A6 small subunit prokMSA_id:082147 AY187454 clone SB77 prokMSA_id:079891 AY188310 clone KD4-2 prokMSA_id:079428 AY188320 clone KD6-104 prokMSA_id:079203 AY188324 clone KD7-54 prokMSA_id:079327 AY188325 clone KD7-99 prokMSA_id:081731 AY193944 clone SB118 prokMSA_id:081368 AY214173 clone ZZ9C2 prokMSA_id:081427 AY214175 clone ZZ9C5 prokMSA_id:081934 AY214176 clone ZZ9C11 prokMSA_id:081879 AY214177 clone ZZ9C12 prokMSA_id:082365 AY214178 clone ZZ9C20 prokMSA_id:082413 AY214181 clone ZZ12C5 prokMSA_id:082656 AY217462 beta clone WCB78 prokMSA_id:082377 AY218550 clone KD1-118 prokMSA_id:081834 AY218553 clone KD1-133 prokMSA_id:081758 AY218587 clone KD2-60 prokMSA_id:082291 AY218607 clone KD3-141 prokMSA_id:081515 AY218635 clone KD4-45 prokMSA_id:081748 AY218637 clone KD4-57 prokMSA_id:082256 AY218642 clone KD4-65 prokMSA_id:081503 AY218648 clone KD4-83 prokMSA_id:081482 AY218703 clone KD7-112 prokMSA_id:081090 AY218726 clone KD5-110 prokMSA_id:082012 AY218748 clone KD6-114 prokMSA_id:081467 AY218767 clone KD6-70 prokMSA_id:082777 AY250090 clone 3 prokMSA_id:082904 AY250095 clone 34 prokMSA_id:084478 AY250096 clone 38 prokMSA_id:084106 AY250097 clone 44 prokMSA_id:084889 AY250098 clone 50 prokMSA_id:084496 AY250099 clone 52 prokMSA_id:084163 AY250101 clone 61 prokMSA_id:085808 AY250102 clone 72 prokMSA_id:086525 AY250103 clone 75 prokMSA_id:083874 AY250106 clone 95 prokMSA_id:083234 AY250108 clone 124 prokMSA_id:082828 AY250111 clone 161 prokMSA_id:089491 AY315172 Glacier FJSSS prokMSA_id:088115 AY315173 Glacier FJI16 prokMSA_id:089980 AY315174 Glacier FJI50 prokMSA_id:088852 AY315175 Glacier FJS17 prokMSA_id:089861 AY315176 Glacier FXS33 prokMSA_id:089052 AY315177 Glacier FXS1 prokMSA_id:089522 AY315178 Glacier FJS31 prokMSA_id:088199 AY315181 Glacier FXI10 prokMSA_id:091600 AY345542 clone LWSR-25 prokMSA_id:007005 U14585 Polaromonas vacuolata str. 34-P. prokMSA_id:006991 U76105 Rhodoferax arc53. prokMSA_id:006986 X95837 str. T3. prokMSA_id:020531 Y12371 1482 bp prokMSA_id:071078 Y12375 1484 bp prokMSA_id:006990 Z93957 clone T3. 2.28.2.9.4.8.093 OTU 1 seq prokMSA_id:090422 AY191334 alpha isolate ODP1176A1H3z_7_B 2.28.2.9.4.8.999 poor quality 238 seqs prokMSA_id:047492 AB011747 beta strain: G24007 prokMSA_id:038019 AB013418 Beta MB18 prokMSA_id:021329 AB054967 Pseudomonas sp. 1082a prokMSA_id:068646 AB081811 seuence clone:A-04 prokMSA_id:086303 AB107185 Beta W-2022 parital prokMSA_id:046983 AF010109 prokMSA_id:031675 AF010110 prokMSA_id:035093 AF018014 T2715c prokMSA_id:042500 AF018017 T2724c prokMSA_id:039804 AF018028 T2789c prokMSA_id:070241 AF078271 Grassland soil clone saf2_424 prokMSA_id:023059 AF078431 Grassland soil clone sl3_624 prokMSA_id:026133 AF083587 Amazonian soil P17 prokMSA_id:006982 AF084947 Rhodoferax antarcticus str. ANT.BR. prokMSA_id:072270 AF097790 clone 1951 prokMSA_id:073042 AF097796 clone 19521 prokMSA_id:033985 AF107527 SY4-8 prokMSA_id:044768 AF141393 beta clone CR-FL8 prokMSA_id:041622 AF141413 beta clone CR-PA6 prokMSA_id:051494 AF141414 beta clone CR-PA11 prokMSA_id:020940 AF141444 beta clone CRE-FL16 prokMSA_id:035032 AF141446 beta clone CRE-FL19 prokMSA_id:028989 AF141457 beta clone CRE-FL35 prokMSA_id:029087 AF141459 beta clone CRE-FL38 prokMSA_id:026592 AF141462 beta clone CRE-FL41 prokMSA_id:016761 AF141469 beta clone CRE-FL50 prokMSA_id:023780 AF141478 beta clone CRE-FL62 prokMSA_id:018000 AF175637 WJGRT-120 prokMSA_id:047989 AF210712 clone SUB6 prokMSA_id:038914 AF231429 Humic substances enrichment clone A13 prokMSA_id:041251 AF231430 Humic substances enrichment clone A15 prokMSA_id:051277 AF231432 Humic substances enrichment clone A26 prokMSA_id:052829 AF231436 Humic substances enrichment clone A44 prokMSA_id:037512 AF231437 Humic substances enrichment clone A49 prokMSA_id:050139 AF231439 Humic substances enrichment clone B32 prokMSA_id:022828 AF231440 Humic substances enrichment clone C11 prokMSA_id:038091 AF231447 Humic substances enrichment clone Q12 prokMSA_id:030006 AF268290 beta ESR 6 prokMSA_id:026796 AF268291 beta ESR 7 prokMSA_id:031242 AF268293 beta ESR 9 prokMSA_id:017171 AF268294 beta ESR 10 prokMSA_id:045489 AF268295 beta ESR 11 prokMSA_id:027485 AF293004 Green Bay ferromanganous micronodule MNA1 prokMSA_id:041736 AF296192 SY6-14 prokMSA_id:046731 AF296207 SY6-62 prokMSA_id:038884 AF296209 SY6-66 prokMSA_id:018258 AF296211 SY6-75 prokMSA_id:022910 AF296219 SY6-101 prokMSA_id:043778 AF296220 SY6-102 prokMSA_id:035262 AF296221 SY6-103 prokMSA_id:044441 AF311986 Acidovorax sp. axD9 prokMSA_id:043172 AF312670 Polaromonas sp. M7 prokMSA_id:026021 AF316735 Crater Lake CL0-102 prokMSA_id:047904 AF316741 Crater Lake CL500-61 prokMSA_id:030682 AF321034 Rhodoferax sp. GOBB3-323 prokMSA_id:021351 AF390912 clone ICBBD2 prokMSA_id:049404 AF418969 clone HT2G4 prokMSA_id:054681 AF419283 antarctic soil clone bh8.1 prokMSA_id:030227 AF422684 clone d161F prokMSA_id:019312 AF428598 clone CRD99-20 prokMSA_id:019451 AF428620 clone CRD99-42 prokMSA_id:035384 AF428633 clone CRD99-55 prokMSA_id:046518 AF428640 clone CRD99-62 prokMSA_id:043698 AF428664 clone CRP99-10 prokMSA_id:032539 AF428700 clone CRP99-46 prokMSA_id:035071 AF428735 clone CR98-5-05 prokMSA_id:021425 AF428738 clone CR98-5-08 prokMSA_id:040145 AF428740 clone CR98-5-10 prokMSA_id:034498 AF428755 clone CR98-5-25 prokMSA_id:038400 AF428756 clone CR98-5-26 prokMSA_id:027302 AF428763 clone CR98-5-33 prokMSA_id:038795 AF428786 clone CR98-5-56 prokMSA_id:045898 AF428788 clone CR98-5-58 prokMSA_id:019076 AF428800 clone CR98-5-70 prokMSA_id:047697 AF428815 clone CR98-24-09 prokMSA_id:052603 AF428859 clone CR98-24-53 prokMSA_id:027925 AF428876 clone CR98-24-70 prokMSA_id:023595 AF428925 clone CR98-35-43 prokMSA_id:020897 AF428959 clone CR99-35-01 prokMSA_id:024112 AF428961 clone CR99-35-03 prokMSA_id:027895 AF428972 clone CR99-35-14 prokMSA_id:039482 AF428995 clone CR99-35-37 prokMSA_id:034267 AF429010 clone CR99-35-52 prokMSA_id:020649 AF429036 clone CR99-7-02 prokMSA_id:048238 AF429051 clone CR99-7-17 prokMSA_id:034819 AF429074 clone CR99-7-40 prokMSA_id:030074 AF429108 clone CR99-7-74 prokMSA_id:034318 AF429132 clone CR99-24-22 prokMSA_id:024631 AF429137 clone CR99-24-27 prokMSA_id:052882 AF429139 clone CR99-24-29 prokMSA_id:049213 AF429168 clone CR99-24-58 prokMSA_id:038902 AF429173 clone CR99-24-63 prokMSA_id:077158 AF431271 beta clone C32.41SM prokMSA_id:076711 AF431278 beta clone S36.11SM prokMSA_id:074998 AF431314 beta clone C47.33PG prokMSA_id:028389 AF432298 beta 0%N-0d-49 prokMSA_id:049779 AF446334 FL14F10 prokMSA_id:060483 AF488659 Beta Z24 prokMSA_id:060480 AF488662 Beta Z27 prokMSA_id:060479 AF488663 Beta Z28 prokMSA_id:066446 AF497869 beta isolate WB5-38B prokMSA_id:066445 AF497870 beta isolate WB8-10 prokMSA_id:072399 AF497871 beta isolate WB8-10B prokMSA_id:066444 AF497872 beta isolate WB8-11 prokMSA_id:066431 AF497885 beta isolate WL5-9 prokMSA_id:066428 AF497889 beta isolate WL11-5 prokMSA_id:088432 AF523003 Comamonadaceae clone D-16 prokMSA_id:072655 AF530953 Beta zj20 prokMSA_id:069905 AF530961 Beta zj53 prokMSA_id:069213 AF531003 Beta zo32 prokMSA_id:069357 AF531023 Beta Mwo2 prokMSA_id:057860 AF546929 clone E5-46-BH1-12/7/98-002 prokMSA_id:078478 AF547033 20 prokMSA_id:078534 AF547045 99 prokMSA_id:075892 AF550602 beta clone LiUU-1-3B prokMSA_id:039983 AJ011158 4-4 clone 4-4 prokMSA_id:021123 AJ231057 beta clone 12 prokMSA_id:038967 AJ231068 beta clone 23 prokMSA_id:023771 AJ231071 beta clone 34 prokMSA_id:026421 AJ232878 clone LRE13 prokMSA_id:048676 AJ237538 Aquaspirillum BIWA95 prokMSA_id:033978 AJ237539 Aquaspirillum BIWA97 prokMSA_id:033701 AJ237540 Aquaspirillum BIWA98 prokMSA_id:049930 AJ237541 Aquaspirillum BIWA912 prokMSA_id:027276 AJ237542 Aquaspirillum BIWA913 prokMSA_id:051183 AJ237543 Aquaspirillum BIWA914 prokMSA_id:018386 AJ237545 Aquaspirillum BIWA921 prokMSA_id:040415 AJ237547 Aquaspirillum BIWA122 prokMSA_id:046587 AJ237548 Aquaspirillum BIWA124 prokMSA_id:046332 AJ237549 Aquaspirillum BIWA128 prokMSA_id:034003 AJ237551 Aquaspirillum BIWA1210 prokMSA_id:031945 AJ237552 Aquaspirillum BIWA1211 prokMSA_id:022469 AJ237553 Aquaspirillum BIWA1212 prokMSA_id:018629 AJ237554 Aquaspirillum BIWA1214 prokMSA_id:070690 AJ239994 beta strain DGGE band CIBAC-6 prokMSA_id:024891 AJ244337 Riz1047 prokMSA_id:037571 AJ251639 soil SRS1 prokMSA_id:047436 AJ287635 beta 222ev prokMSA_id:018145 AJ287640 beta 350ev prokMSA_id:049978 AJ287641 beta 394ev prokMSA_id:016830 AJ287642 beta 391ev prokMSA_id:036996 AJ287643 beta 341ev prokMSA_id:054471 AJ287644 beta 382ev prokMSA_id:017953 AJ287645 beta 182ev prokMSA_id:024263 AJ287646 beta 184ev prokMSA_id:026564 AJ289107 Rhodoferax fermentans strain DSM 13 235 prokMSA_id:029353 AJ289110 Rhodoferax fermentans prokMSA_id:073649 AJ289951 25-5-20 prokMSA_id:021938 AJ290057 FukuS94 prokMSA_id:041405 AJ308267 clone F99_02 prokMSA_id:018680 AJ311504 beta Sau 3 prokMSA_id:033410 AJ318196 beta clone BIvii32 prokMSA_id:040060 AJ400566 clone G4-K21 prokMSA_id:025576 AJ421922 beta clone Elb117 prokMSA_id:028104 AJ421934 beta clone Elb213 prokMSA_id:043397 AJ421939 beta clone Elb264 prokMSA_id:077159 AJ428136 isolate band ns-b3 prokMSA_id:025885 AJ431310 clone 2_14 prokMSA_id:055372 AJ507516 clone VEL4-99 prokMSA_id:096801 AJ510041 clone BH-5 prokMSA_id:057327 AJ518107 clone Mul01-10 prokMSA_id:071242 AJ518130 clone Mul01-61 prokMSA_id:057297 AJ518166 clone Mul1P2-19 prokMSA_id:057195 AJ518318 clone Neu2P1-39 prokMSA_id:073904 AJ518526 clone Qui2P3-43 prokMSA_id:056956 AJ518621 clone Sai1P1-22 prokMSA_id:056942 AJ518644 clone Sai2P1-84 prokMSA_id:056931 AJ518657 clone Sai2P2-28 prokMSA_id:056928 AJ518661 clone Sai2P2-41 prokMSA_id:056919 AJ518669 clone Sai2P2-70 prokMSA_id:096051 AJ583810 Variovorax sp. clone DGGE band 25 prokMSA_id:039142 AY013660 Banisveld landfill BVB94a prokMSA_id:029005 AY037876 gamma clone CD2H8 prokMSA_id:023605 AY039392 Soil NS7 prokMSA_id:061535 AY043679 beta clone NOS7.167WL prokMSA_id:065528 AY095432 yard-trimming-compost clone S-70 prokMSA_id:060902 AY135865 clone SG1-17 prokMSA_id:059183 AY136086 Beta KIN109 prokMSA_id:069217 AY145580 beta clone DC5-0-7 prokMSA_id:073037 AY145581 beta clone DC5-0-8 prokMSA_id:071853 AY145609 beta clone DC11-0-8a prokMSA_id:072390 AY145610 beta clone DC11-0-8b prokMSA_id:070831 AY145611 beta clone DC11-0-9 prokMSA_id:069595 AY145614 beta clone DC11-0-22 prokMSA_id:093225 AY145858 beta isolate DGGE band REA12 prokMSA_id:093410 AY145860 beta isolate DGGE band REA21 prokMSA_id:093578 AY145863 beta isolate DGGE band REA51 prokMSA_id:093166 AY145866 beta isolate DGGE band REA61 prokMSA_id:093827 AY145874 beta isolate DGGE band RWA33 prokMSA_id:071196 AY146666 Beta K15 prokMSA_id:069271 AY146667 Beta K16 prokMSA_id:097744 AY147376 beta Wu21 prokMSA_id:097268 AY147380 beta Wu42 prokMSA_id:098202 AY147394 beta Wd36 prokMSA_id:095185 AY147396 beta Wd41 prokMSA_id:096777 AY147397 Wd42 prokMSA_id:077213 AY168728 clone HC-48P prokMSA_id:075848 AY168742 clone HC-32 prokMSA_id:078423 AY177771 Variovorax sp. isolate 6i29 prokMSA_id:081420 AY187396 clone SA7 prokMSA_id:081226 AY187405 clone SA29 prokMSA_id:081440 AY187415 clone SA50 prokMSA_id:081733 AY187419 clone SA62 prokMSA_id:082414 AY187446 clone SB43 prokMSA_id:081677 AY187447 clone SB60 prokMSA_id:081401 AY187484 clone SC39 prokMSA_id:082159 AY187486 clone SC55 prokMSA_id:082217 AY187515 clone SD65 prokMSA_id:081092 AY187530 clone SD105 prokMSA_id:081907 AY193910 clone SA12 prokMSA_id:081726 AY193962 clone SC131 prokMSA_id:085620 AY217463 Beta WCIR9 prokMSA_id:084184 AY217464 Beta WCIR7 prokMSA_id:084879 AY217465 Beta WCIR5 prokMSA_id:086062 AY217467 beta clone WCB28 prokMSA_id:085740 AY224512 Polaromonas sp. prokMSA_id:083529 AY271862 clone BSW 35 prokMSA_id:088107 AY289444 soil clone DS-105 prokMSA_id:089726 AY289445 soil clone DS-161 prokMSA_id:091548 AY337034 Cytophagales clone SL-4 prokMSA_id:091471 AY337040 beta clone 5a-RIV prokMSA_id:096217 AY395187 clone I15K prokMSA_id:006998 D84645 str. S24561. prokMSA_id:007000 U45671 clone AI269. prokMSA_id:007001 U45676 clone AI312. prokMSA_id:007007 U45678 clone AI346. prokMSA_id:006992 U45682 clone AI361. prokMSA_id:007008 U45683 clone AI372. prokMSA_id:006993 U45694 clone CL07. prokMSA_id:046064 U85114 beta clone ACK-SA4 prokMSA_id:006983 X91468 clone A45L. prokMSA_id:007002 X91485 clone A62L. prokMSA_id:007003 X97592 str. T67. prokMSA_id:007004 X97594 str. T73. prokMSA_id:006984 X97597 str. T14. prokMSA_id:006985 Z46256 Comamonas baltica. prokMSA_id:006981 Z93953 clone T14. prokMSA_id:006989 Z93956 clone T99. 2.28.2.9.4.9 STR.SBR2098_SUBGROUP 13 seqs 2.28.2.9.4.9.999 poor quality 13 seqs prokMSA_id:060897 AY135873 clone SG1-62 prokMSA_id:007017 X84471 str. SBR1027. prokMSA_id:007020 X84502 str. SBR1070. prokMSA_id:007009 X84504 str. SBR1072. prokMSA_id:007015 X84511 str. SBR1079. prokMSA_id:007013 X84523 unnamed organism. prokMSA_id:007011 X84538 str. SBR1112. prokMSA_id:007018 X84550 str. SBR2005. prokMSA_id:007012 X84556 str. SBR2012. prokMSA_id:007019 X84563 str. SBR2020. prokMSA_id:007010 X84603 str. SBR2071. prokMSA_id:007014 X84627 str. SBR2098. prokMSA_id:007016 X97599 str. T65. 2.28.2.9.4.10 VRV.PARADOXUS_SUBGROUP 168 seqs 2.28.2.9.4.10.002 OTU 1 seq prokMSA_id:007024 AB021354 str. rA2. 2.28.2.9.4.10.005 OTU 1 seq prokMSA_id:059560 AY134902 Lautropia sp. oral clone FX006 2.28.2.9.4.10.006 OTU 2 seqs prokMSA_id:021981 AJ252597 Rhizosphere soil isolate RSI-30 prokMSA_id:025065 AJ252598 Rhizosphere soil isolate RSI-31 2.28.2.9.4.10.007 OTU 1 seq prokMSA_id:028592 AF208386 Variovorax paradoxus 2.28.2.9.4.10.011 OTU 58 seqs prokMSA_id:007029 AB003627 Variovorax WFF52 str. WFF52. prokMSA_id:007025 AB008000 Variovorax paradoxus str. MBIC3839. prokMSA_id:031737 AB051685 Variovorax sp. HAB-21 prokMSA_id:042755 AB051686 Variovorax sp. HAB-22 prokMSA_id:049651 AB051687 Variovorax sp. HAB-23 prokMSA_id:029134 AB051688 Variovorax sp. HAB-24 prokMSA_id:041243 AB051689 Variovorax sp. HAB-27 prokMSA_id:047559 AB051690 Variovorax sp. HAB-29 prokMSA_id:043527 AB051691 Variovorax sp. HAB-30 prokMSA_id:078024 AB098595 Variovorax sp. TUT1027 prokMSA_id:031005 AF180947 VL3 complete prokMSA_id:034834 AF214127 Variovorax sp. P9G781 prokMSA_id:049144 AF214128 Variovorax sp. P16G933 prokMSA_id:039269 AF214129 Variovorax sp. P16G917 prokMSA_id:050112 AF388028 Variovorax sp. 34 prokMSA_id:022797 AF408329 Variovorax sp. clone KL-93-1-6 prokMSA_id:017368 AF422685 clone d161R prokMSA_id:071064 AF423073 Beta '#33 clear' prokMSA_id:058871 AF423075 Beta '#33 spreading' prokMSA_id:058864 AF426000 UNSW5 prokMSA_id:050305 AF445125 clone Tc65 prokMSA_id:039774 AF445130 clone Tc70 prokMSA_id:062983 AF526925 Variovorax sp. clone T6-5 rrn prokMSA_id:062976 AF526934 Variovorax sp. clone 84-3 rrn prokMSA_id:062974 AF526935 Variovorax sp. clone 84-23 rrn prokMSA_id:056155 AF526937 Variovorax sp. clone 83-5 rrn prokMSA_id:062971 AF526938 Variovorax sp. clone 81-4 rrn prokMSA_id:091550 AF532867 Variovorax sp. K6 prokMSA_id:091307 AF532868 Variovorax paradoxus prokMSA_id:060338 AF534203 clone Nap240 prokMSA_id:059726 AF538929 Variovorax sp. WDL1 prokMSA_id:031151 AJ289989 FukuN107 prokMSA_id:029704 AJ292622 WD240 clone WD240 prokMSA_id:052575 AJ292623 WD2100 clone WD2100 prokMSA_id:074636 AJ292627 WD2115 clone WD2115 prokMSA_id:035441 AJ292629 WD223 clone WD223 prokMSA_id:074476 AJ292633 WD250 clone WD250 prokMSA_id:074820 AJ292635 WD265 clone WD265 prokMSA_id:074733 AJ292636 WD270 clone WD270 prokMSA_id:037381 AJ292659 WD299 clone WD299 prokMSA_id:054821 AJ313017 Variovorax sp. MN 36.2 isolate MN 36.2 prokMSA_id:035360 AJ420329 Variovorax paradoxus strain DSM 66 prokMSA_id:064275 AJ491705 Variovorax paradoxus strain P1 prokMSA_id:086262 AJ555474 Variovorax sp. MN 45.2b.1 strain MN 45.2b.1 prokMSA_id:093524 AJ581969 Variovorax paradoxus strain 3R3-22 prokMSA_id:093305 AJ581971 Variovorax paradoxus strain 3R4-22 prokMSA_id:057761 AY127900 Variovorax paradoxus strain Iso1 prokMSA_id:082437 AY169431 Variovorax paradoxus clone 1-94 prokMSA_id:081851 AY169432 Variovorax paradoxus clone 1-95 prokMSA_id:078833 AY177770 Variovorax sp. isolate 4f48 prokMSA_id:079041 AY177772 Variovorax sp. isolate 4f45 prokMSA_id:079410 AY179863 Variovorax sp. Pal2 prokMSA_id:092333 AY238498 Variovorax sp. 55 prokMSA_id:084323 AY242706 soil clone Tc121-C06 prokMSA_id:091240 AY336553 Beta pfB24 prokMSA_id:007022 D30793 Variovorax paradoxus IAM 12373 . prokMSA_id:007028 D88006 Variovorax paradoxus IAM 12373 . prokMSA_id:007027 D89026 str. HW1. 2.28.2.9.4.10.012 OTU 1 seq prokMSA_id:038957 AF445694 beta clone SM1F12 2.28.2.9.4.10.013 OTU 1 seq prokMSA_id:041200 AF236012 Beta A0837 2.28.2.9.4.10.014 OTU 1 seq prokMSA_id:085176 AY250100 clone 59 2.28.2.9.4.10.015 OTU 1 seq prokMSA_id:086368 AY250104 clone 76 2.28.2.9.4.10.016 OTU 1 seq prokMSA_id:089349 AY317112 Beta BAL58 2.28.2.9.4.10.017 OTU 1 seq prokMSA_id:095904 AY186082 clone SPCUL1C2C8 small subunit 2.28.2.9.4.10.018 OTU 1 seq prokMSA_id:095932 AY160868 clone COB P5-8 2.28.2.9.4.10.999 poor quality 98 seqs prokMSA_id:044100 AB011735 beta strain: G23101 prokMSA_id:027390 AB011736 beta strain: G23113 prokMSA_id:029804 AB013416 Variovorax sp. MB16 prokMSA_id:086361 AB106921 Beta 5-2 prokMSA_id:082644 AB107193 Beta W-2030 parital prokMSA_id:049198 AF103812 soil L3 prokMSA_id:034801 AF175609 WJGRT-64 prokMSA_id:048256 AF176845 24-D-degrading 012 prokMSA_id:029023 AF226244 maize root Zmrc236 prokMSA_id:025849 AF234051 #0319-23P7 prokMSA_id:047152 AF234078 #0319-6K17 prokMSA_id:074575 AF234084 #0319-6N6 prokMSA_id:035179 AF240152 TSA-14.2 prokMSA_id:030008 AF250422 Variovorax sp. D63 prokMSA_id:070727 AF288730 Variovorax paradoxus strain Ep1 prokMSA_id:070445 AF288737 Variovorax paradoxus strain Bm2 prokMSA_id:034394 AF312673 Variovorax sp. M16 prokMSA_id:032370 AF361182 Variovorax sp. prokMSA_id:068130 AF365606 clone BT60MF7BB6 prokMSA_id:052832 AF417503 isolate DGGE band 4V374 prokMSA_id:025322 AF428585 clone CRD99-07 prokMSA_id:051402 AF428599 clone CRD99-21 prokMSA_id:030372 AF428606 clone CRD99-28 prokMSA_id:039531 AF428616 clone CRD99-38 prokMSA_id:035828 AF428644 clone CRD99-66 prokMSA_id:023799 AF428646 clone CRD99-68 prokMSA_id:049718 AF428757 clone CR98-5-27 prokMSA_id:037646 AF428804 clone CR98-5-74 prokMSA_id:032768 AF428997 clone CR99-35-39 prokMSA_id:044175 AF429041 clone CR99-7-07 prokMSA_id:023702 AF429086 clone CR99-7-52 prokMSA_id:044788 AF429142 clone CR99-24-32 prokMSA_id:029796 AF429195 clone CR99-2-09 prokMSA_id:074883 AF431312 beta clone C47.15PG prokMSA_id:075611 AF431313 beta clone C47.16PG prokMSA_id:044354 AF451851 Variovorax paradoxus strain dS prokMSA_id:066447 AF497868 beta isolate WB5-38 prokMSA_id:056211 AF530949 Beta zj06 prokMSA_id:074317 AF532137 Variovorax sp. A-A7-19 prokMSA_id:078994 AF547026 304 prokMSA_id:078639 AF547027 361 prokMSA_id:073406 AJ233514 clone WR119 prokMSA_id:049876 AJ233535 clone WR197 prokMSA_id:043745 AJ233537 clone WR199 prokMSA_id:017638 AJ233540 clone WR1111 prokMSA_id:039939 AJ286733 Variovorax sp. isolate DGGE bands I & i prokMSA_id:047419 AJ295385 Rape rhizosphere M9008 prokMSA_id:041645 AJ295390 Rape rhizosphere M9022 prokMSA_id:020236 AJ295395 Rape rhizosphere M9033 prokMSA_id:051016 AJ295397 Rape rhizosphere M9036 prokMSA_id:050690 AJ295401 Rape rhizosphere M9046 prokMSA_id:034615 AJ295407 Rape rhizosphere M9060 prokMSA_id:048481 AJ295408 Rape rhizosphere M9062 prokMSA_id:023620 AJ309971 Variovorax sp. dtb30 prokMSA_id:024535 AJ309983 beta strain dtb31 prokMSA_id:017951 AJ404551 Variovorax VV2 prokMSA_id:074939 AJ428143 isolate band mw-b7 prokMSA_id:033008 AJ431320 clone 2_3b prokMSA_id:074721 AJ507502 clone VE26-99 prokMSA_id:096333 AJ510040 clone BH-4 prokMSA_id:076117 AJ517836 Variovorax sp. KU11 strain KU11 prokMSA_id:094144 AJ581635 beta clone SB3 prokMSA_id:094131 AJ581639 beta clone SK1 prokMSA_id:021754 AY037730 earthworm cast clone C126 prokMSA_id:018545 AY039388 Earthworm cast C19M1 prokMSA_id:039194 AY039389 Earthworm cast C21M1 prokMSA_id:030252 AY039394 Soil S64D1 prokMSA_id:040297 AY039395 Soil S78M1 prokMSA_id:061630 AY043560 5S2.G8 prokMSA_id:061618 AY043572 Variovorax sp. 5S2.A7 prokMSA_id:061594 AY043603 Forest soil 1S2.F10 prokMSA_id:061549 AY043663 beta clone NOW2.63WL prokMSA_id:061538 AY043675 beta clone NOS7.140WL prokMSA_id:061455 AY043780 beta clone NMW3.196WL prokMSA_id:030075 AY048898 L11-23hw13 prokMSA_id:062443 AY102032 Beta HTCC226 prokMSA_id:059518 AY136517 Variovorax sp. A-A20-4 prokMSA_id:074523 AY136518 Variovorax sp. A-A20-5 prokMSA_id:059503 AY136539 Variovorax sp. V-O7-5 prokMSA_id:059500 AY136542 Pseudomonas sp. V-O7-10 prokMSA_id:077427 AY138999 beta pIC16S1-1 prokMSA_id:072881 AY145618 beta clone DC11-51-4 prokMSA_id:098460 AY147381 beta Wu43 prokMSA_id:097586 AY147395 Wd37 prokMSA_id:082314 AY187505 clone SD19 prokMSA_id:079738 AY190135 Variovorax paradoxus strain EP1 prokMSA_id:079927 AY190155 Variovorax paradoxus strain S31 prokMSA_id:086178 AY242705 soil clone Tc121-D05 prokMSA_id:091041 AY336558 Variovorax sp. pfB29 prokMSA_id:091384 AY337042 beta clone 3a-EST prokMSA_id:094127 AY357983 beta cEV44 prokMSA_id:007026 D84617 str. S23408. prokMSA_id:007021 U09777 clone JAP301. prokMSA_id:007030 U45669 clone AI208. prokMSA_id:007031 U45670 clone AI235. prokMSA_id:052095 X89907 Variovorax paradoxus strain BF4 prokMSA_id:016799 X89916 Variovorax paradoxus strain PC5.1B prokMSA_id:007023 Z77418 str. 1-420 C52. 2.28.2.9.4.11 STR.STRIPA_MINE_ISOLATE 3 seqs 2.28.2.9.4.11.001 OTU 2 seqs prokMSA_id:007032 L20811 unnamed organism. prokMSA_id:071697 L20811 sp. group II from Stripa mine fragment 2.28.2.9.4.11.999 poor quality 1 seq prokMSA_id:098247 AJ583809 beta clone DGGE band 24 2.28.2.9.4.12 XP.AMPELINUS_SUBGROUP 38 seqs 2.28.2.9.4.12.001 OTU 1 seq prokMSA_id:007036 Z93961 clone T59. 2.28.2.9.4.12.002 OTU 1 seq prokMSA_id:007035 Z93959 clone T65. 2.28.2.9.4.12.003 OTU 1 seq prokMSA_id:007034 Z93958 clone T15. 2.28.2.9.4.12.005 OTU 1 seq prokMSA_id:023855 AF285414 Xenophilus azovorans 2.28.2.9.4.12.007 OTU 9 seqs prokMSA_id:007033 AF078758 Xylophilus ampelinus ATCC 33914 . prokMSA_id:038267 AJ292624 WD291 clone WD291 prokMSA_id:074663 AJ292630 WD242 clone WD242 prokMSA_id:074736 AJ292631 WD216 clone WD216 prokMSA_id:074803 AJ292634 WD262 clone WD262 prokMSA_id:022998 AJ420330 Xylophilus ampelinus strain DSM 7250 prokMSA_id:081911 AY192070 beta clone P12-GM4R-t prokMSA_id:092459 AY359844 beta clone cEIII53 prokMSA_id:092428 AY359847 beta clone cEIII56 2.28.2.9.4.12.008 OTU 1 seq prokMSA_id:045606 AF364862 BA128 2.28.2.9.4.12.009 OTU 1 seq prokMSA_id:072933 AF150719 Elbe River snow isolate IsoP10 2.28.2.9.4.12.010 OTU 1 seq prokMSA_id:081611 AY218585 clone KD2-46 2.28.2.9.4.12.999 poor quality 22 seqs prokMSA_id:086292 AB107175 Beta W-2010 parital prokMSA_id:037288 AF141388 beta clone CR-FL2 prokMSA_id:042972 AF141392 beta clone CR-FL6 prokMSA_id:025096 AF141394 beta clone CR-FL9 prokMSA_id:037043 AF141458 beta clone CRE-FL37 prokMSA_id:016415 AF141468 beta clone CRE-FL49 prokMSA_id:041124 AF141581 beta clone CRO-FL2 prokMSA_id:049177 AF226214 maize root Zmrc172 prokMSA_id:067462 AF493259 clone pHS7 prokMSA_id:043207 AJ233522 clone WR151 prokMSA_id:038386 AJ233523 clone WR153 prokMSA_id:031863 AJ233524 clone WR159 prokMSA_id:037363 AJ233544 clone WR1123 prokMSA_id:074582 AJ292628 WD212 clone WD212 prokMSA_id:074792 AJ292632 WD218 clone WD218 prokMSA_id:049763 AJ292859 WR8134 clone WR8134 prokMSA_id:032207 AY039393 Soil S30D2 prokMSA_id:060900 AY135867 clone SG1-39 prokMSA_id:060899 AY135869 clone SG1-50 prokMSA_id:055567 AY135881 clone SG1-103 prokMSA_id:060871 AY135900 clone SG2-24 prokMSA_id:029457 U63961 Rhodoferax sp. 2.28.2.9.4.13 AV.AVENAE_SUBGROUP 309 seqs 2.28.2.9.4.13.006 OTU 1 seq prokMSA_id:007068 AB021328 str. rJ10. 2.28.2.9.4.13.012 OTU 1 seq prokMSA_id:007061 AB021339 str. rM4. 2.28.2.9.4.13.014 OTU 1 seq prokMSA_id:007041 Z93966 clone T36. 2.28.2.9.4.13.015 OTU 1 seq prokMSA_id:007040 Z93965 clone T22. 2.28.2.9.4.13.016 OTU 1 seq prokMSA_id:007037 AF144383 Ramlibacter tataouinensis TTB310 2.28.2.9.4.13.017 OTU 2 seqs prokMSA_id:017198 AF143840 clone AF1-8 prokMSA_id:098380 AY275432 Brachymonas petroleovorans strain CHX 2.28.2.9.4.13.018 OTU 1 seq prokMSA_id:021380 AY013650 Banisveld landfill BVB20 2.28.2.9.4.13.019 OTU 3 seqs prokMSA_id:059344 AF502223 clone HP1B35 prokMSA_id:062968 AF527581 clone LPB10 prokMSA_id:062959 AF527594 clone LPU25 2.28.2.9.4.13.020 OTU 1 seq prokMSA_id:022962 AJ318167 clone BIrii27 2.28.2.9.4.13.021 OTU 2 seqs prokMSA_id:023495 AB076849 Comamonas sp. NSP4 prokMSA_id:030168 AB076851 Comamonas sp. NSP7 2.28.2.9.4.13.024 OTU 1 seq prokMSA_id:026625 AF097829 clone 4956 2.28.2.9.4.13.025 OTU 1 seq prokMSA_id:031108 AF234687 sludge H21 2.28.2.9.4.13.026 OTU 2 seqs prokMSA_id:031285 AF214644 Nitrogen-fixing MI753 prokMSA_id:055821 AY081978 clone KRA30+06T 2.28.2.9.4.13.027 OTU 1 seq prokMSA_id:033590 AY013646 Banisveld landfill BVB58 2.28.2.9.4.13.028 OTU 1 seq prokMSA_id:035250 AY038713 clone TAF-A216 2.28.2.9.4.13.035 OTU 1 seq prokMSA_id:040752 AF439400 Ramlibacter henchirensis 2.28.2.9.4.13.036 OTU 1 seq prokMSA_id:041585 AB076876 beta clone:TSL-1-1 2.28.2.9.4.13.037 OTU 1 seq prokMSA_id:048943 AF229859 Acidovorax sp. 2FB4 2.28.2.9.4.13.038 OTU 1 seq prokMSA_id:051990 AF097814 clone 4952 2.28.2.9.4.13.041 OTU 1 seq prokMSA_id:064871 AJ412678 clone 81 2.28.2.9.4.13.042 OTU 2 seqs prokMSA_id:065472 AY102310 clone a13103 prokMSA_id:065461 AY102324 clone a13125 2.28.2.9.4.13.043 OTU 1 seq prokMSA_id:066240 AF508103 Variovorax paradoxus isolate TG27 2.28.2.9.4.13.044 OTU 1 seq prokMSA_id:071666 AY050606 clone RA13C5 2.28.2.9.4.13.045 OTU 1 seq prokMSA_id:071849 AF097789 clone 19512 2.28.2.9.4.13.046 OTU 2 seqs prokMSA_id:074685 AJ400840 Acidovorax wohlfahrtii strain B2/74 prokMSA_id:078738 AY177768 Acidovorax sp. 2.28.2.9.4.13.047 OTU 6 seqs prokMSA_id:086274 AJ543437 Acidovorax sp. clone 4.2-9 prokMSA_id:084159 AJ543438 Acidovorax sp. clone 4.3-1 prokMSA_id:075271 AY154481 earthworm intestine clone wi10 prokMSA_id:074935 AY154483 earthworm intestine clone wi17 prokMSA_id:076361 AY154490 earthworm intestine clone wi39 prokMSA_id:075305 AY154491 earthworm intestine clone wi77 2.28.2.9.4.13.048 OTU 1 seq prokMSA_id:075597 AJ518818 Acidovorax delafieldii isolate B27 2.28.2.9.4.13.049 OTU 1 seq prokMSA_id:076621 AJ532684 beta clone Gitt-KF-21 2.28.2.9.4.13.050 OTU 3 seqs prokMSA_id:082958 AJ543435 Acidovorax sp. clone 11.2-15 prokMSA_id:083818 AJ543436 Acidovorax sp. clone 4.7-1 prokMSA_id:076907 AY154496 earthworm intestine clone wi89 2.28.2.9.4.13.051 OTU 1 seq prokMSA_id:078916 AJ537466 Ottowia thiooxidans strain K11T 2.28.2.9.4.13.053 OTU 83 seqs prokMSA_id:007063 AB008429 Comamonas sp. str. MBIC3885. prokMSA_id:007060 AB021330 str. rJ12. prokMSA_id:007062 AB021344 str. rM9. prokMSA_id:017812 AB064317 Beta NA10B prokMSA_id:066108 AB074945 beta clone:KB38 prokMSA_id:051135 AB076842 Acidovorax sp. KSP1 prokMSA_id:022529 AB076843 Acidovorax sp. KSP2 prokMSA_id:028959 AB076844 Acidovorax sp. OS-6 prokMSA_id:030289 AB076855 Beta KSP3 prokMSA_id:028537 AB076856 Beta KSP4 prokMSA_id:050887 AB076861 beta clone:OS1L-2 prokMSA_id:023197 AB076866 beta clone:OS1L-9 prokMSA_id:055628 AB087519 clone:R6-01 prokMSA_id:007077 AF015487 str. P51. prokMSA_id:007075 AF050527 clone WCHA1-62. prokMSA_id:007067 AF078759 Acidovorax avenae subsp. avenae ATCC 19860 . prokMSA_id:007052 AF078760 Acidovorax konjaci str. K2 ATCC 33996 . prokMSA_id:007054 AF078761 Acidovorax avenae subsp. citrulli ATCC 29625 . prokMSA_id:007047 AF078762 Acidovorax avenae subsp. cattleyae NCPPB 961 . prokMSA_id:007064 AF078763 Acidovorax IMI 357678 str. IMI 357678. prokMSA_id:007074 AF078764 Acidovorax delafieldii ATCC 17505 . prokMSA_id:007038 AF078765 Acidovorax facilis CCUG 2113 . prokMSA_id:007056 AF078766 Acidovorax temperans CCUG 11779 . prokMSA_id:007076 AF078767 Acidovorax 7078 str. 7078. prokMSA_id:007070 AF137504 Acidovorax avenae subsp. cattleyae ICMP 2826. prokMSA_id:007071 AF137505 Acidovorax avenae subsp. avenae ICMP 3183. prokMSA_id:007072 AF137506 Acidovorax avenae subsp. citrulli ICMP 7500. prokMSA_id:007053 AF137507 Acidovorax konjaci str. K2 ICMP 7733. prokMSA_id:072924 AF150707 Elbe River snow isolate Iso34 prokMSA_id:021107 AF229860 Acidovorax sp. 2FB5 prokMSA_id:051049 AF229862 Acidovorax sp. 2FB7 prokMSA_id:025119 AF235010 Acidovorax sp. UFZ-B517 prokMSA_id:019277 AF235013 Acidovorax sp. UFZ-B530 prokMSA_id:058863 AF426001 UNSW6 prokMSA_id:073890 AF442523 Bromate-reducing B7 prokMSA_id:043677 AF458096 Acidovorax sp. 3DHB1 prokMSA_id:038816 AF469367 clone 33-FL34B99 prokMSA_id:066293 AF506047 Acidovorax sp. LCSAOTU27 prokMSA_id:066230 AF508114 Acidovorax avenae isolate C1 prokMSA_id:062392 AF529122 beta clone FTLM27 prokMSA_id:061833 AF529329 beta clone CLi28 prokMSA_id:061820 AF529344 beta clone CLi96 prokMSA_id:045559 AJ009457 SJA-23 clone SJA-23 prokMSA_id:007044 AJ012070 Acidovorax G7A1 str. G7A1. prokMSA_id:007045 AJ012071 Acidovorax G8B1 str. G8B1. prokMSA_id:007065 AJ130765 Acidovorax LW1 str. LW1. prokMSA_id:070234 AJ277707 Acidovorax sp. strain 1916 prokMSA_id:019406 AJ295481 rape rhizosphere wr0020 prokMSA_id:039244 AJ418042 Beta K601 strain K601 prokMSA_id:037472 AJ420323 Acidovorax delafieldii strain DSM 50263 prokMSA_id:024374 AJ420324 Acidovorax facilis strain DSM 649 prokMSA_id:052263 AJ420325 Acidovorax konjaci strain DSM 7481 prokMSA_id:064550 AJ431731 Acidovorax valerianelle strain CFBP 4730 prokMSA_id:066952 AJ457191 Acidovorax sp. C1 strain C1 prokMSA_id:078020 AJ514429 clone ASG1 prokMSA_id:076895 AJ534662 beta clone S15A-MN11 prokMSA_id:079046 AJ534865 Acidovorax sp. DW126 isolate DW126 prokMSA_id:085498 AJ555476 Acidovorax sp. MN 33.2 strain MN 33.2 prokMSA_id:094534 AJ583180 beta- clone S15D-MN220 prokMSA_id:035174 AY038714 clone TAF-B73 prokMSA_id:047550 AY050592 clone GOUTB4 prokMSA_id:016529 AY050593 clone GOUTB6 prokMSA_id:049770 AY050599 clone GOUTB16 prokMSA_id:055345 AY093698 Acidovorax sp. 'smarlab 133815' prokMSA_id:079219 AY187382 clone csbio160204 prokMSA_id:079295 AY187383 clone csbio160165 prokMSA_id:082187 AY192041 beta clone G76-GM4R prokMSA_id:081644 AY192056 beta clone P6-GM4R-t prokMSA_id:081589 AY214196 clone ZZ14C11 prokMSA_id:081755 AY214202 clone ZZ15C1 prokMSA_id:082409 AY214203 clone ZZ15C2 prokMSA_id:086562 AY250092 clone 27 prokMSA_id:084438 AY250109 clone 151 prokMSA_id:091606 AY345397 G14 prokMSA_id:092030 AY360350 Acidovorax sp. 040703/8067L prokMSA_id:049989 D87103 Pseudomonas sp. prokMSA_id:007057 U51101 str. BrG1. prokMSA_id:007058 U51104 str. BrG4. prokMSA_id:024938 X86070 0803 filamentous strain Ben05B prokMSA_id:024480 X86071 0803 filamentous strain Ben04B prokMSA_id:007043 Y18616 Acidovorax defluvii str. BSB411. prokMSA_id:042288 Y18617 Acidovorax sp. BSB421 prokMSA_id:007039 Z93964 clone T20. 2.28.2.9.4.13.054 OTU 1 seq prokMSA_id:079322 AY187341 clone csbio160310 2.28.2.9.4.13.055 OTU 1 seq prokMSA_id:079359 AY187340 clone csbio160373 2.28.2.9.4.13.056 OTU 1 seq prokMSA_id:080070 AY188297 clone KD1-99 2.28.2.9.4.13.057 OTU 1 seq prokMSA_id:081231 AY218621 clone KD3-9 2.28.2.9.4.13.058 OTU 2 seqs prokMSA_id:081577 AY193963 clone SC135 prokMSA_id:082075 AY193965 clone SC137 2.28.2.9.4.13.059 OTU 1 seq prokMSA_id:082358 AY192049 beta clone P81-GM4R-t 2.28.2.9.4.13.060 OTU 1 seq prokMSA_id:083899 AJ543434 Acidovorax sp. clone Ol2-2 2.28.2.9.4.13.061 OTU 2 seqs prokMSA_id:083935 AJ543439 Acidovorax sp. isolate EfNe1 prokMSA_id:083933 AJ543440 Acidovorax sp. isolate EfNe2 2.28.2.9.4.13.062 OTU 1 seq prokMSA_id:084980 AY250093 clone 28 2.28.2.9.4.13.063 OTU 1 seq prokMSA_id:088491 AY297980 clone TA55_Ba_89 2.28.2.9.4.13.064 OTU 1 seq prokMSA_id:089488 AF443570 clone C-FCF-16 2.28.2.9.4.13.065 OTU 1 seq prokMSA_id:097627 AY379977 Acidovorax sp. AHL 5 2.28.2.9.4.13.999 poor quality 168 seqs prokMSA_id:049096 AB013405 Beta MB1 prokMSA_id:020385 AB013406 Beta MB2 prokMSA_id:048157 AB013407 Beta MB4 prokMSA_id:031388 AB013420 Beta MC3 prokMSA_id:007069 AB021421 Acidovorax avenae subsp. avenae ATCC 19307. prokMSA_id:091439 AB101566 Comamonadaceae GF23 prokMSA_id:007046 AF035049 unnamed organism. prokMSA_id:073233 AF097787 clone 19510 prokMSA_id:018942 AF097798 clone 1954 prokMSA_id:073672 AF097801 clone 1957 prokMSA_id:050394 AF102107 3284com prokMSA_id:039279 AF104289 Beta-142 prokMSA_id:040036 AF175591 WJGRT-20 prokMSA_id:031031 AF175604 WJGRT-47 prokMSA_id:053678 AF183154 Soil isolate KBS-LC1 prokMSA_id:028785 AF183158 Soil isolate KBS-LC8 prokMSA_id:020510 AF216505 beta HetTri46-11 prokMSA_id:046914 AF216506 beta ProCent43-5 prokMSA_id:073157 AF216507 beta SkelCos6-18 prokMSA_id:072607 AF289156 beta clone PRD01a008B prokMSA_id:019040 AF316732 Crater Lake CL0-76 prokMSA_id:029573 AF332182 Acidovorax delafieldii isolate B7-7 prokMSA_id:043988 AF332184 Acidovorax delafieldii isolate B7-9 prokMSA_id:044675 AF332185 Acidovorax delafieldii isolate N7-18 prokMSA_id:049928 AF332186 Acidovorax delafieldii isolate N7-21 prokMSA_id:028950 AF332187 Acidovorax delafieldii isolate N7-28 prokMSA_id:049094 AF361181 Acidovorax sp. prokMSA_id:022021 AF390909 clone ICBBA5 prokMSA_id:018903 AF390913 clone ICBBB10 prokMSA_id:038318 AF390914 clone ICBBD7 prokMSA_id:045764 AF390950 clone TFBMA5 prokMSA_id:021083 AF392648 clone LEF2 prokMSA_id:029117 AF392649 clone LEE12 prokMSA_id:019997 AF428662 clone CRP99-08 prokMSA_id:037533 AF428734 clone CR98-5-04 prokMSA_id:046798 AF428741 clone CR98-5-11 prokMSA_id:031906 AF428874 clone CR98-24-68 prokMSA_id:037036 AF428915 clone CR98-35-33 prokMSA_id:043585 AF429058 clone CR99-7-24 prokMSA_id:039364 AF429242 clone CR99-2-56 prokMSA_id:023529 AF429260 clone CR99-2-74 prokMSA_id:070651 AF457651 Acidovorax sp. TA2 prokMSA_id:026969 AF457653 Acidovorax sp. TA35 prokMSA_id:033126 AF469366 clone 33-PA7B00 prokMSA_id:077453 AF477796 beta clone AGCO14 prokMSA_id:077395 AF477797 clone AGCY21 prokMSA_id:077485 AF477798 beta clone AGCM15 prokMSA_id:055447 AF486703 clone E5-46-HS3I-222 prokMSA_id:068571 AF486706 clone E5-46-HS3I-225 prokMSA_id:068569 AF486707 clone E5-46-HS3I-226 prokMSA_id:068567 AF486711 clone E5-46-HS3I-230 prokMSA_id:068566 AF486712 clone E5-46-HS3I-231 prokMSA_id:068564 AF486713 clone E5-46-HS3I-232 prokMSA_id:068562 AF486714 clone E5-46-HS3I-233 prokMSA_id:056145 AF486715 clone E5-46-HS3I-234 prokMSA_id:055899 AF486716 clone E5-46-HS3I-235 prokMSA_id:055322 AF486719 clone E5-46-HS3I-238 prokMSA_id:068559 AF486724 clone E5-46-HS3I-243 prokMSA_id:068554 AF486728 clone E5-46-HS3I-247 prokMSA_id:055630 AF486731 clone E5-46-HS3I-250 prokMSA_id:068546 AF486738 clone E5-46-HS3I-257 prokMSA_id:068544 AF486740 clone E5-46-HS3I-259 prokMSA_id:068542 AF486742 clone E5-46-HS3I-261 prokMSA_id:068540 AF486745 clone E5-46-HS3I-264 prokMSA_id:068536 AF486749 clone E5-46-HS3I-269 prokMSA_id:068535 AF486750 clone E5-46-HS3I-270 prokMSA_id:068533 AF486752 clone E5-46-HS3I-272 prokMSA_id:068528 AF486756 clone E5-46-HS3I-276 prokMSA_id:068525 AF486760 clone E5-46-HS3I-280 prokMSA_id:068522 AF486763 clone E5-46-HS3I-283 prokMSA_id:068520 AF486764 clone E5-46-HS3I-284 prokMSA_id:068516 AF486765 clone E5-46-HS3I-285 prokMSA_id:068518 AF486766 clone E5-46-HS3I-286 prokMSA_id:068519 AF486769 clone E5-46-HS3I-289 prokMSA_id:068517 AF486770 clone E5-46-HS3I-290 prokMSA_id:068515 AF486771 clone E5-46-HS3I-291 prokMSA_id:068514 AF486773 clone E5-46-HS3I-293 prokMSA_id:068511 AF486776 clone E5-46-HS3I-296 prokMSA_id:068508 AF486777 clone E5-46-HS3I-297 prokMSA_id:068499 AF486783 clone E5-46-HS3I-303 prokMSA_id:068500 AF486785 clone E5-46-HS3I-305 prokMSA_id:068498 AF486786 clone E5-46-HS3I-306 prokMSA_id:068501 AF486787 clone E5-46-HS3I-307 prokMSA_id:068502 AF486789 clone E5-46-HS3I-309 prokMSA_id:055660 AF486790 clone E5-46-HS3I-310 prokMSA_id:068497 AF486791 clone E5-46-HS3P-312 prokMSA_id:060500 AF488641 Beta Z6 prokMSA_id:060498 AF488644 Beta Z9 prokMSA_id:067428 AF493318 clone pHS118 prokMSA_id:066429 AF497888 beta isolate WL11-3 prokMSA_id:072193 AF530265 Acidovorax sp. S7-22 prokMSA_id:059537 AF538768 Enrichment culture clone LB-K prokMSA_id:007073 AJ007013 Acidovorax anthurii str. CFBP 3232. prokMSA_id:032346 AJ009716 isolate K33 prokMSA_id:046649 AJ232806 clone TRE19 prokMSA_id:039386 AJ295353 Rape rhizosphere cse011 prokMSA_id:019198 AJ295387 Rape rhizosphere M9016 prokMSA_id:047849 AJ295422 Rape rhizosphere tsb013 prokMSA_id:034807 AJ295497 rape rhizosphere wr0039 prokMSA_id:031981 AJ311397 maize rhizosphere c11_23 prokMSA_id:023420 AJ311432 maize rhizosphere c18-68 prokMSA_id:051434 AJ404579 US6 prokMSA_id:047118 AJ404643 beta 272-1-2 prokMSA_id:064870 AJ412675 clone 86 prokMSA_id:045820 AJ421093 clone C9-K19 prokMSA_id:043540 AJ422166 beta clone Spb183 prokMSA_id:080864 AJ437121 clone k9-01 prokMSA_id:090584 AJ576105 Acidovorax sp. clone 101 prokMSA_id:045892 AY037879 clone CD1B11 prokMSA_id:017539 AY048189 Comamonas sp. clone PR-VFA-15 prokMSA_id:060877 AY135892 clone SG1-153 prokMSA_id:059516 AY136522 Acidovorax sp. A-O7-3 prokMSA_id:072162 AY136528 Acidovorax sp. A-O7-20 prokMSA_id:055253 AY136532 Acidovorax sp. S-O7-3 prokMSA_id:059511 AY136533 Acidovorax sp. S-O7-7 prokMSA_id:069893 AY136535 Acidovorax sp. S-O7-17 prokMSA_id:056156 AY136544 Acidovorax sp. W-O7-2 prokMSA_id:059499 AY136545 Acidovorax sp. W-O7-6 prokMSA_id:071372 AY145584 beta clone DC5-50-11 prokMSA_id:076424 AY157077 beta isolate WD-41 prokMSA_id:076947 AY157080 beta isolate WD-40 prokMSA_id:077251 AY157086 beta isolate WB-41 prokMSA_id:077013 AY157095 beta isolate WB-40 prokMSA_id:077028 AY157101 beta isolate WB-68 prokMSA_id:075555 AY157103 beta isolate WB-56 prokMSA_id:076075 AY157127 beta isolate HS-41 prokMSA_id:076221 AY157141 beta isolate PG-40 prokMSA_id:074995 AY157146 beta isolate PG-74 prokMSA_id:082355 AY187409 clone SA34 prokMSA_id:081964 AY187410 clone SA35 prokMSA_id:081072 AY187441 clone SA158 prokMSA_id:082227 AY187456 clone SB81 prokMSA_id:081213 AY187460 clone SB112 prokMSA_id:081394 AY187489 clone SC75 prokMSA_id:081254 AY187514 clone SD62 prokMSA_id:081567 AY187518 clone SD69 prokMSA_id:081800 AY187533 clone SD112 prokMSA_id:080088 AY193101 clone DA34 prokMSA_id:081398 AY193919 clone SB23 prokMSA_id:081580 AY193921 clone SB25 prokMSA_id:082031 AY193954 clone SC40 prokMSA_id:089775 AY228545 Acidovorax sp. JS42 prokMSA_id:083228 AY251207 beta clone 1B_7 prokMSA_id:085486 AY253434 clone HC1 prokMSA_id:086176 AY253438 clone HC5 prokMSA_id:089509 AY323155 beta clone A115-21 prokMSA_id:089380 AY323190 beta clone A114-3 prokMSA_id:093978 AY357957 beta cEV14 prokMSA_id:096587 AY394630 gamma clone N10-5 prokMSA_id:007078 U45667 clone AI047. prokMSA_id:007079 U45684 clone AI383. prokMSA_id:007080 U45685 clone AI391. prokMSA_id:007081 U45686 clone AI423. prokMSA_id:007082 U45689 clone AI563. prokMSA_id:007059 U51105 str. BrG5. prokMSA_id:025773 U85115 beta clone ACK-C87 prokMSA_id:051327 U85116 beta clone ACK-C7 prokMSA_id:045033 U85117 beta clone ACK-C66 prokMSA_id:007055 X84470 str. SBR1026. prokMSA_id:007051 X84519 str. SBR1091. prokMSA_id:007083 X84554 str. SBR2010. prokMSA_id:007050 X84585 str. SBR2048. prokMSA_id:007048 X84600 str. SBR2067. prokMSA_id:007066 X97591 str. T20. prokMSA_id:022901 Y12797 strain MR1G prokMSA_id:041431 Y13425 strain mr176B prokMSA_id:007049 Z46235 Rhodoferax limosa str. 7087. prokMSA_id:007042 Z93967 clone T87. 2.28.2.9.4.14 AQSP.PSYCHROPHILUM_SUBGROUP 91 seqs 2.28.2.9.4.14.001 OTU 3 seqs prokMSA_id:066303 AB074522 Aquaspirillum giesbergeri prokMSA_id:066300 AB074527 Aquaspirillum anulus prokMSA_id:007101 AF078754 Aquaspirillum sinuosum LMG 4393 . 2.28.2.9.4.14.005 OTU 1 seq prokMSA_id:007094 Z93962 clone T69. 2.28.2.9.4.14.009 OTU 38 seqs prokMSA_id:007090 AB021320 str. rJ1. prokMSA_id:007091 AB021334 str. rJ16. prokMSA_id:007092 AB021340 str. rM5. prokMSA_id:007093 AB021361 str. rA10. prokMSA_id:035415 AB076845 Beta NOS3 prokMSA_id:044893 AB076846 Beta NOS8 prokMSA_id:007088 AF078755 Aquaspirillum psychrophilum str. CA 1 LMG 5408 . prokMSA_id:007096 AF078757 Aquaspirillum metamorphum LMG 4339 . prokMSA_id:034473 AF407194 clone GIF2 prokMSA_id:045919 AF407197 clone GIF5 prokMSA_id:016841 AF407204 clone GIF15 prokMSA_id:042320 AF422624 clone d004 prokMSA_id:021928 AF422625 clone d005 prokMSA_id:050249 AF422636 clone d024R prokMSA_id:035695 AF422643 clone d034 prokMSA_id:034758 AF422656 clone d067F prokMSA_id:052690 AF422662 clone d078 prokMSA_id:017041 AF422668 clone d091 prokMSA_id:020490 AF422670 clone d094 prokMSA_id:024763 AF422672 clone d123 prokMSA_id:031922 AJ276398 Variovorax sp. ANRB-Zg prokMSA_id:070807 AJ505856 Comamonadaceae PIV-4-2 strain PIV-4-2 prokMSA_id:058579 AJ505857 Comamonadaceae PIV-8-1 strain PIV-8-1 prokMSA_id:070987 AJ505858 Comamonadaceae PIV-8-2 strain PIV-8-2 prokMSA_id:058577 AJ505860 Comamonadaceae PIV-16-1 strain PIV-16-1 prokMSA_id:058575 AJ505861 Comamonadaceae PIV-16-2 strain PIV-16-2 prokMSA_id:058573 AJ505862 Comamonadaceae PIV-20-1 strain PIV-20-1 prokMSA_id:047038 AY050583 clone GOUTA11 prokMSA_id:079563 AY188319 clone KD5-88 prokMSA_id:079199 AY188326 clone KD8-10 prokMSA_id:081909 AY218567 clone KD1-96 prokMSA_id:081988 AY218665 clone KD9-29 prokMSA_id:081772 AY218684 clone KD8-125 prokMSA_id:081428 AY218687 clone KD8-42 prokMSA_id:081783 AY218688 clone KD8-49 prokMSA_id:083658 AY239581 clone CARB_ER2_13 prokMSA_id:007098 Y18618 Aquaspirillum metamorphum DSM 1837. prokMSA_id:007097 Z93960 clone T33. 2.28.2.9.4.14.010 OTU 2 seqs prokMSA_id:007089 AJ002810 Comamonas sp. str. R7. prokMSA_id:070139 AJ505855 Comamonadaceae PIV-3D strain PIV-3D 2.28.2.9.4.14.011 OTU 5 seqs prokMSA_id:039467 AB076847 Beta OS-9 prokMSA_id:027570 AB076848 Beta OS-19 prokMSA_id:020007 AB076860 beta clone:OS1L-1 prokMSA_id:035320 AB076863 beta clone:OS1L-5 prokMSA_id:045318 AB076864 beta clone:OS1L-6 2.28.2.9.4.14.012 OTU 1 seq prokMSA_id:030450 AF422635 clone d024F 2.28.2.9.4.14.013 OTU 1 seq prokMSA_id:037583 AF422679 clone d156 2.28.2.9.4.14.014 OTU 1 seq prokMSA_id:046535 AF422663 clone d079 2.28.2.9.4.14.015 OTU 1 seq prokMSA_id:080589 AY188296 clone KD1-23 2.28.2.9.4.14.016 OTU 1 seq prokMSA_id:081265 AY218679 clone KD8-106 2.28.2.9.4.14.017 OTU 1 seq prokMSA_id:081545 AY218576 clone KD2-15 2.28.2.9.4.14.018 OTU 1 seq prokMSA_id:081938 AY218603 clone KD3-128 2.28.2.9.4.14.019 OTU 1 seq prokMSA_id:082020 AY218716 clone KD7-81 2.28.2.9.4.14.020 OTU 1 seq prokMSA_id:082194 AY218554 clone KD1-134 2.28.2.9.4.14.021 OTU 1 seq prokMSA_id:082399 AY218700 clone KD7-100 2.28.2.9.4.14.999 poor quality 32 seqs prokMSA_id:018927 AF125196 Birch root related HA02-1 prokMSA_id:021913 AF296204 SY6-55 prokMSA_id:045029 AF417502 isolate DGGE band 4V355 prokMSA_id:053216 AF422622 clone d002 prokMSA_id:032805 AF422633 clone d022 prokMSA_id:034729 AF422648 clone d039 prokMSA_id:046726 AF422654 clone d049 prokMSA_id:049384 AF422657 clone d067R prokMSA_id:050124 AF422664 clone d080 prokMSA_id:060487 AF488656 Beta Z21 prokMSA_id:063680 AF522924 clone 5g10 prokMSA_id:063671 AF522935 clone 8g18 prokMSA_id:074848 AJ233529 clone WR177 prokMSA_id:042728 AJ278518 beta clone 1-5 prokMSA_id:035014 AJ309972 dtb11 prokMSA_id:057009 AJ518560 clone Qui4P1-88 prokMSA_id:082459 AY193978 clone SD120 prokMSA_id:083808 AY253426 clone AC1 prokMSA_id:085044 AY253440 clone HC7 prokMSA_id:007102 X84479 str. SBR1036. prokMSA_id:007105 X84514 str. SBR1084. prokMSA_id:007087 X84532 str. SBR1105. prokMSA_id:007100 X84580 str. SBR2041. prokMSA_id:007084 X84589 str. SBR2053. prokMSA_id:007104 X84619 str. SBR2089. prokMSA_id:007095 X91179 clone G2. prokMSA_id:007103 X91186 clone G14. prokMSA_id:007085 X97593 str. T69. prokMSA_id:007107 X97595 str. T33. prokMSA_id:007099 X97596 str. T59. prokMSA_id:007106 X97598 str. T36. prokMSA_id:007086 Z69271 clone JN6b. 2.28.2.9.5 LEPTOTHRIX_SUBGROUP 562 seqs 2.28.2.9.5.1 RUB.GELATINOSUS_SUBGROUP 174 seqs 2.28.2.9.5.1.001 OTU 1 seq prokMSA_id:007124 AF125877 str. DhA-73. 2.28.2.9.5.1.002 OTU 1 seq prokMSA_id:007123 D88007 Alcaligenes latus IAM 12599 . 2.28.2.9.5.1.003 OTU 4 seqs prokMSA_id:007118 AB016167 Rubrivivax gelatinosus str. IL144. prokMSA_id:068337 AF487435 Rubrivivax gelatinosus strain OK3O3 prokMSA_id:007115 D16213 Rubrivivax gelatinosus str. ATH 2.2.1 ATCC 17011 . prokMSA_id:007122 D16214 Rubrivivax gelatinosus str. A3. 2.28.2.9.5.1.005 OTU 3 seqs prokMSA_id:057492 AF447790 beta clone S2 prokMSA_id:057490 AF447792 beta clone S6 prokMSA_id:007110 Z93979 clone T10. 2.28.2.9.5.1.006 OTU 7 seqs prokMSA_id:039488 AB049105 Ideonella sp. B508-1 prokMSA_id:038900 AB049106 Ideonella sp. B511 prokMSA_id:040398 AB049107 Ideonella sp. B513 prokMSA_id:051665 AF236010 Beta A0640 prokMSA_id:030280 AJ318108 beta clone BIci13 prokMSA_id:051906 AJ318109 beta clone BIci13b prokMSA_id:007109 X72724 Ideonella dechloratans CCUG 30898 . 2.28.2.9.5.1.007 OTU 2 seqs prokMSA_id:048162 AF234681 sludge A2 prokMSA_id:017679 AF234685 sludge A26b 2.28.2.9.5.1.008 OTU 1 seq prokMSA_id:019727 AJ422159 beta clone Spb87 2.28.2.9.5.1.009 OTU 1 seq prokMSA_id:019775 AF356022 clone S4 2.28.2.9.5.1.010 OTU 1 seq prokMSA_id:021288 AJ232787 clone TRS7 2.28.2.9.5.1.011 OTU 1 seq prokMSA_id:021411 AJ421925 beta clone Elb136 2.28.2.9.5.1.012 OTU 2 seqs prokMSA_id:022172 AF445699 beta clone SM1G05 prokMSA_id:087028 AY293516 beta clone FL13B01 2.28.2.9.5.1.013 OTU 1 seq prokMSA_id:024241 AF280853 mle1-19 2.28.2.9.5.1.014 OTU 1 seq prokMSA_id:025535 AY037674 earthworm cast clone C016 2.28.2.9.5.1.015 OTU 1 seq prokMSA_id:025706 AB030613 epsilon 1063 2.28.2.9.5.1.016 OTU 1 seq prokMSA_id:026649 AJ421941 beta clone Elb271 2.28.2.9.5.1.017 OTU 1 seq prokMSA_id:027656 AF359341 Nitrosospira sp. TCH719 2.28.2.9.5.1.018 OTU 2 seqs prokMSA_id:029302 AJ421937 beta clone Elb252 prokMSA_id:091495 AY345493 clone W4-B56 2.28.2.9.5.1.019 OTU 1 seq prokMSA_id:030949 AF316739 Crater Lake CL500-36 2.28.2.9.5.1.020 OTU 1 seq prokMSA_id:031460 AJ421930 beta clone Elb192 2.28.2.9.5.1.022 OTU 9 seqs prokMSA_id:007119 AF176594 str. PM1. prokMSA_id:033614 AF358003 clone LO13.11 prokMSA_id:075509 AF431309 beta clone C47.01PG prokMSA_id:065622 AF507778 soil clone S1200 prokMSA_id:022856 AJ422152 beta clone Spb03 prokMSA_id:046503 AJ422165 beta clone Spb153 prokMSA_id:090731 AJ577118 beta clone 34 prokMSA_id:079302 AY188315 clone KD5-121 prokMSA_id:081389 AY218683 clone KD8-118 2.28.2.9.5.1.023 OTU 1 seq prokMSA_id:037495 AF293003 Green Bay ferromanganous micronodule MNE12 2.28.2.9.5.1.024 OTU 1 seq prokMSA_id:038002 AF234683 sludge A15 2.28.2.9.5.1.025 OTU 2 seqs prokMSA_id:058127 AF498703 Ellin321 prokMSA_id:074807 AJ292626 WD2102 clone WD2102 2.28.2.9.5.1.026 OTU 2 seqs prokMSA_id:073389 AF385534 Leptothrix sp. oral clone AW043 prokMSA_id:041105 AF385538 Beta oral clone CA004 2.28.2.9.5.1.027 OTU 1 seq prokMSA_id:042541 AF177943 Tepidimonas ignava complete 2.28.2.9.5.1.028 OTU 1 seq prokMSA_id:045926 AF244133 Burkholderia cepacia 2.28.2.9.5.1.029 OTU 1 seq prokMSA_id:051718 AJ421931 beta clone Elb197 2.28.2.9.5.1.030 OTU 1 seq prokMSA_id:061735 AJ416174 clone Urk0-17 2.28.2.9.5.1.031 OTU 1 seq prokMSA_id:065911 AF507408 soil clone C0148 2.28.2.9.5.1.032 OTU 1 seq prokMSA_id:067255 AF495433 clone F13.37 2.28.2.9.5.1.033 OTU 1 seq prokMSA_id:073327 AJ416210 clone Sta2-26 2.28.2.9.5.1.034 OTU 1 seq prokMSA_id:073442 AF309815 synthetic wastewater tmbr15-22 complete 2.28.2.9.5.1.035 OTU 1 seq prokMSA_id:075493 AY168737 clone HC-23 2.28.2.9.5.1.036 OTU 1 seq prokMSA_id:076650 AY168745 clone HC-38 2.28.2.9.5.1.037 OTU 1 seq prokMSA_id:079085 AY177371 Phenanthrene-degrading 90 2.28.2.9.5.1.038 OTU 1 seq prokMSA_id:079120 AY187385 clone csbio160107 2.28.2.9.5.1.039 OTU 1 seq prokMSA_id:079133 AY187380 clone csbio160123 2.28.2.9.5.1.040 OTU 1 seq prokMSA_id:081087 AY218734 clone KD5-22 2.28.2.9.5.1.041 OTU 1 seq prokMSA_id:081136 AY187526 clone SD90 2.28.2.9.5.1.042 OTU 1 seq prokMSA_id:081345 AY187402 clone SA24 2.28.2.9.5.1.043 OTU 1 seq prokMSA_id:082337 AY218754 clone KD6-15 2.28.2.9.5.1.044 OTU 1 seq prokMSA_id:083752 AY214625 beta clone SL2-1-F1 2.28.2.9.5.1.045 OTU 1 seq prokMSA_id:086881 AY268236 clone D6 small subunit 2.28.2.9.5.1.046 OTU 1 seq prokMSA_id:091412 AY337603 Beta HS5/S24542 2.28.2.9.5.1.999 poor quality 106 seqs prokMSA_id:046437 AF010004 prokMSA_id:029215 AF010037 prokMSA_id:041637 AF078185 Grassland soil clone saf1_113 prokMSA_id:033527 AF078218 Grassland soil clone saf1_315 prokMSA_id:029201 AF078252 Grassland soil clone saf2_219 prokMSA_id:052244 AF078260 Grassland soil clone saf2_411 prokMSA_id:048942 AF078411 Grassland soil clone sl3_604 prokMSA_id:046468 AF078436 Grassland soil clone sl3_805 prokMSA_id:034188 AF141538 beta clone CRE-PA69 prokMSA_id:032337 AF175625 WJGRT-88 prokMSA_id:043917 AF234753 sludge A37 prokMSA_id:052592 AF289882 beta Kmlps3-6 prokMSA_id:046606 AF314448 PHOS-HE08 prokMSA_id:032343 AF361183 Aquabacterium sp. prokMSA_id:052442 AF392639 clone CBE8 prokMSA_id:023102 AF392644 clone LBG2 prokMSA_id:028157 AF392646 clone LEA6 prokMSA_id:028167 AF392647 clone LEC5 prokMSA_id:047209 AF424752 beta clone M3sb8 prokMSA_id:026702 AF429231 clone CR99-2-45 prokMSA_id:077228 AF431242 beta clone C17.45WL prokMSA_id:076448 AF431245 beta clone S22.17WL prokMSA_id:076498 AF431256 beta clone N27.27SM prokMSA_id:075762 AF431274 beta clone C32.53SM prokMSA_id:075462 AF431284 beta clone S36.45SM prokMSA_id:075522 AF431288 beta clone S37.21SM prokMSA_id:076921 AF431293 beta clone S37.43SM prokMSA_id:075715 AF431326 beta clone S52.34PG prokMSA_id:057730 AF432274 delta FO-0d-43 prokMSA_id:057729 AF432288 beta FO-26d-70 prokMSA_id:030934 AF446315 beta FL04D02 prokMSA_id:021238 AF446316 beta FL14A01 prokMSA_id:068709 AF484055 clone t44 prokMSA_id:067254 AF495434 clone F13.38 prokMSA_id:057857 AF546930 clone E5-46-BH1-12/7/98-003 prokMSA_id:055506 AF547417 beta clone CL-S77-304 prokMSA_id:043134 AJ232805 clone TRE3 prokMSA_id:051287 AJ233512 clone WR113 prokMSA_id:028070 AJ233515 clone WR121 prokMSA_id:016750 AJ233530 clone WR182 prokMSA_id:022853 AJ233538 clone WR1105 prokMSA_id:026049 AJ233543 clone WR1121 prokMSA_id:022652 AJ292853 WR809 clone WR809 prokMSA_id:020594 AJ292856 WR839 clone WR839 prokMSA_id:061761 AJ416181 clone Sta1-05 prokMSA_id:055308 AJ416246 clone Sta4-36 prokMSA_id:018511 AJ421894 clone Alt9-K52 prokMSA_id:020107 AJ421920 beta clone Elb101 prokMSA_id:017104 AJ421926 beta clone Elb153 prokMSA_id:052083 AJ422154 beta clone Spb07 prokMSA_id:042310 AJ422156 beta clone Spb49 prokMSA_id:041146 AJ431296 clone 1_26 prokMSA_id:050076 AJ431319 clone 2_3a prokMSA_id:031685 AJ431327 clone 1_60 prokMSA_id:073792 AJ518115 clone Mul01-20 prokMSA_id:056250 AJ518169 clone Mul1P2-27 prokMSA_id:057293 AJ518174 clone Mul1P2-46 prokMSA_id:057193 AJ518317 clone Neu2P1-37 prokMSA_id:057169 AJ518356 clone Neu2P3-92 prokMSA_id:057064 AJ518480 clone Qui2P1-35 prokMSA_id:093254 AJ582586 clone M20-04 prokMSA_id:035193 AY039396 Soil S92D1 prokMSA_id:061550 AY043662 beta clone NOW2.57WL prokMSA_id:061542 AY043673 beta clone NOS7.127WL prokMSA_id:061537 AY043677 beta clone NOS7.162WL prokMSA_id:061446 AY043786 beta clone NMS8.120WL prokMSA_id:061443 AY043790 beta clone NMS8.147WL prokMSA_id:085499 AY092362 clone BI1 prokMSA_id:086148 AY092364 clone BI34 prokMSA_id:074102 AY123961 S4-22 prokMSA_id:069493 AY145631 beta FL10B03 prokMSA_id:073959 AY145674 beta CD21H12 prokMSA_id:076777 AY157112 beta isolate HS-58 prokMSA_id:076913 AY157131 beta isolate PG-85 prokMSA_id:075169 AY157132 beta isolate PG-86 prokMSA_id:076622 AY157135 beta isolate PG-87 prokMSA_id:076641 AY157144 beta isolate PG-76 prokMSA_id:076015 AY168738 clone HC-29 prokMSA_id:079451 AY185812 Beta UC1 prokMSA_id:079224 AY185813 Beta UC2 prokMSA_id:079184 AY187386 clone csbio160185 prokMSA_id:082343 AY187435 clone SA108 prokMSA_id:081347 AY187437 clone SA126 prokMSA_id:082026 AY187453 clone SB75 prokMSA_id:081169 AY187528 clone SD101 prokMSA_id:082025 AY187534 clone SD114 prokMSA_id:080186 AY193051 clone LLB16 prokMSA_id:080655 AY196467 Aquabacterium sp. clone K2 prokMSA_id:080100 AY196468 Aquabacterium sp. clone K3 prokMSA_id:080034 AY196469 Aquabacterium sp. clone K4 prokMSA_id:079828 AY196470 Aquabacterium sp. clone UW8 prokMSA_id:084330 AY214617 beta clone SL2-1-F7 prokMSA_id:085589 AY214857 beta clone BB-2-A8F prokMSA_id:085623 AY251219 beta clone 1B_32 prokMSA_id:090382 AY289447 soil clone DS-108 prokMSA_id:087970 AY293466 beta clone FL05G09 prokMSA_id:007125 D26254 soil from soybean field clone FIE1. prokMSA_id:007116 D84619 str. S23410. prokMSA_id:007117 D84641 str. S24542. prokMSA_id:007114 M60682 Rubrivivax gelatinosus str. ATH 2.2.1 ATCC 17011 . prokMSA_id:007120 U45674 clone AI301. prokMSA_id:007111 U45692 clone CL05. prokMSA_id:007121 U45695 clone CL08. prokMSA_id:007113 X84573 str. SBR2034. prokMSA_id:007108 X84597 str. SBR2063. prokMSA_id:007112 X84617 str. SBR2087. 2.28.2.9.5.2 LPTX.MOBILIS_SUBGROUP 86 seqs 2.28.2.9.5.2.002 OTU 11 seqs prokMSA_id:079792 AB087560 Sphaerotilus sp. L1 prokMSA_id:080068 AB087561 Sphaerotilus sp. L2 prokMSA_id:080513 AB087562 Sphaerotilus sp. L3 prokMSA_id:079648 AB087563 Sphaerotilus sp. L6 prokMSA_id:079774 AB087564 Sphaerotilus sp. L7 prokMSA_id:080525 AB087565 Sphaerotilus sp. L8 prokMSA_id:080616 AB087567 Sphaerotilus sp. L13 prokMSA_id:079735 AB087568 Sphaerotilus sp. L19 prokMSA_id:007130 AF072915 Sphaerotilus IF5 str. IF5. prokMSA_id:007131 AF072916 Sphaerotilus IF9 str. IF9. prokMSA_id:007132 AF072917 Sphaerotilus IF14 str. IF14. 2.28.2.9.5.2.003 OTU 1 seq prokMSA_id:007128 AB015048 Leptothrix MBIC3364 str. MBIC3364. 2.28.2.9.5.2.004 OTU 1 seq prokMSA_id:007127 AF013518 unnamed organism. 2.28.2.9.5.2.005 OTU 1 seq prokMSA_id:007126 X97071 Leptothrix mobilis str. Feox-1 DSM 10617 . 2.28.2.9.5.2.006 OTU 2 seqs prokMSA_id:016299 AF460988 Thiomonas sp. C02 prokMSA_id:019232 AF460989 Thiomonas sp. C19 2.28.2.9.5.2.007 OTU 1 seq prokMSA_id:017255 AF229890 Ralstonia sp. P-4CB2 2.28.2.9.5.2.010 OTU 7 seqs prokMSA_id:030548 AF190215 Beta MC-5 prokMSA_id:089016 AF523005 Limnobacter sp. clone I-1 prokMSA_id:026793 AJ289885 Limnobacter thiooxidans strain CS-K2 prokMSA_id:027619 AJ295478 rape rhizosphere wr0017 prokMSA_id:056354 AY100600 clone cvf56041 prokMSA_id:059191 AY136077 Beta KIN72 prokMSA_id:090229 AY328846 Drinking water MB16 2.28.2.9.5.2.011 OTU 2 seqs prokMSA_id:031935 AJ422158 beta clone Spb69 prokMSA_id:025579 AJ422161 beta clone Spb111 2.28.2.9.5.2.012 OTU 1 seq prokMSA_id:040205 AJ421915 beta clone Elb37 2.28.2.9.5.2.013 OTU 1 seq prokMSA_id:040810 AF293005 Green Bay ferromanganous micronodule MNA5 2.28.2.9.5.2.014 OTU 1 seq prokMSA_id:041229 AJ315485 isolate HuCC33 2.28.2.9.5.2.015 OTU 1 seq prokMSA_id:049434 AJ422155 beta clone Spb26 2.28.2.9.5.2.016 OTU 1 seq prokMSA_id:051243 U70706 beta OM156 2.28.2.9.5.2.017 OTU 1 seq prokMSA_id:064439 AY102883 clone BCM1-39B 2.28.2.9.5.2.018 OTU 1 seq prokMSA_id:064586 AF467390 beta clone 1527 2.28.2.9.5.2.019 OTU 2 seqs prokMSA_id:064874 AJ412674 clone 87 prokMSA_id:066506 AY100580 clone cvf65168 2.28.2.9.5.2.020 OTU 1 seq prokMSA_id:067262 AF495426 clone F13.3 2.28.2.9.5.2.021 OTU 1 seq prokMSA_id:073984 AF097804 clone 4951 2.28.2.9.5.2.023 OTU 5 seqs prokMSA_id:007133 AF125876 str. DhA-71. prokMSA_id:080077 AJ512945 Caenibacterium thermophilum strain N2-680T prokMSA_id:079664 AY152824 Schlegelia thermodepolymerans prokMSA_id:076291 AY154486 earthworm intestine clone wi22 prokMSA_id:076494 AY154487 earthworm intestine clone wi23 2.28.2.9.5.2.024 OTU 1 seq prokMSA_id:079539 AY187912 clone S2 2.28.2.9.5.2.025 OTU 2 seqs prokMSA_id:081258 AY218638 clone KD4-58 prokMSA_id:081483 AY218641 clone KD4-64 2.28.2.9.5.2.026 OTU 1 seq prokMSA_id:086340 AY274154 clone D34 2.28.2.9.5.2.999 poor quality 40 seqs prokMSA_id:079669 AB087566 Sphaerotilus sp. L12 prokMSA_id:021713 AF026391 Beta SCB52 prokMSA_id:007129 AF072914 Sphaerotilus IF4 str. IF4. prokMSA_id:022702 AF234070 #0319-6D20 prokMSA_id:049487 AF245332 SA17 prokMSA_id:023148 AF289887 beta Kmlps3-11 prokMSA_id:020416 AF358014 clone LO13.21 prokMSA_id:018304 AF392634 clone TCC5 prokMSA_id:029940 AF392636 clone SCA2 prokMSA_id:048043 AF428803 clone CR98-5-73 prokMSA_id:042968 AF429170 clone CR99-24-60 prokMSA_id:074927 AF431298 beta clone N41.97PG prokMSA_id:076924 AF431315 beta clone C47.38PG prokMSA_id:069470 AF544928 beta clone 4-6-3 prokMSA_id:034187 AJ233478 clone WR139 prokMSA_id:023643 AJ296593 DGGE band PSBAC-13 prokMSA_id:048868 AJ298276 SCBP-D1 prokMSA_id:016998 AJ404547 Comamonas CS5 prokMSA_id:023503 AJ421914 beta clone Elb26 prokMSA_id:034523 AJ421918 beta clone Elb80 prokMSA_id:031053 AJ421924 beta clone Elb134 prokMSA_id:057180 AJ518338 clone Neu2P1-91 prokMSA_id:057063 AJ518481 clone Qui2P1-48 prokMSA_id:073062 AJ518498 clone Qui2P2-15 prokMSA_id:056955 AJ518622 clone Sai1P1-24 prokMSA_id:089937 AJ577116 beta clone 2 prokMSA_id:088472 AJ577120 beta clone 100 prokMSA_id:041069 AY034836 CA6 prokMSA_id:031875 AY034838 CA8 prokMSA_id:061449 AY043785 beta clone SMW4.65WL prokMSA_id:072228 AY135484 Leptothrix sp. CA-20 prokMSA_id:077404 AY138995 beta pBM16S12 prokMSA_id:070734 AY144233 beta clone LTUB11614 prokMSA_id:075242 AY157072 beta isolate WC-47 prokMSA_id:076939 AY157082 beta isolate WB-31 prokMSA_id:077214 AY157084 beta isolate WB-65 prokMSA_id:075975 AY157107 beta isolate HS-52 prokMSA_id:075798 AY157123 beta isolate HS-84 prokMSA_id:080468 AY191879 Thiomonas sp. clone BG38 prokMSA_id:089647 AY289448 soil clone ABS-4 2.28.2.9.5.3 SPT.NATANS_SUBGROUP 9 seqs 2.28.2.9.5.3.001 OTU 1 seq prokMSA_id:007139 Z18534 Sphaerotilus natans str. 565. 2.28.2.9.5.3.002 OTU 1 seq prokMSA_id:025262 AJ422177 beta clone Spb300 2.28.2.9.5.3.999 poor quality 7 seqs prokMSA_id:066574 AB072236 Sphaerotilus natans prokMSA_id:007138 L33976 Sphaerotilus natans ATCC 15291. prokMSA_id:007136 L33977 Sphaerotilus natans ATCC 29329. prokMSA_id:007140 L33978 Sphaerotilus natans ATCC 29330. prokMSA_id:007135 L33980 Sphaerotilus natans ATCC 13338 . prokMSA_id:007137 X78641 clone SMK200. prokMSA_id:007134 X84618 str. SBR2088. 2.28.2.9.5.4 LPTX.DISCOPHORA_SUBGROUP 293 seqs 2.28.2.9.5.4.001 OTU 1 seq prokMSA_id:007175 AB008801 Leptothrix sp. str. HS. 2.28.2.9.5.4.002 OTU 1 seq prokMSA_id:007174 U62834 clone RB11. 2.28.2.9.5.4.003 OTU 2 seqs prokMSA_id:007173 L33975 Leptothrix discophora str. SS-1 ATCC 43182 . prokMSA_id:007164 Z18533 Leptothrix discophora str. SS-1 ATCC 43182 . 2.28.2.9.5.4.009 OTU 1 seq prokMSA_id:007158 AF047647 clone TRB32. 2.28.2.9.5.4.024 OTU 1 seq prokMSA_id:031150 AF143842 clone AF2.2 2.28.2.9.5.4.025 OTU 1 seq prokMSA_id:033911 AJ421936 beta clone Elb236 2.28.2.9.5.4.026 OTU 5 seqs prokMSA_id:034633 AJ422163 beta clone Spb132 prokMSA_id:040687 AJ422176 beta clone Spb298 prokMSA_id:095964 AJ575700 beta clone SW21 prokMSA_id:079206 AY187389 clone csbio160143 prokMSA_id:088758 AY328753 DSSD55 2.28.2.9.5.4.027 OTU 48 seqs prokMSA_id:055732 AB062160 clone:pBSB4.21 prokMSA_id:058506 AB072717 clone:pHAuB-34 prokMSA_id:007165 AF035050 Aquabacterium citratiphilum str. B4. prokMSA_id:007151 AF035052 Aquabacterium parvum str. B6. prokMSA_id:007154 AF035054 Aquabacterium commune str. B8. prokMSA_id:007156 AF089858 Aquabacterium Aqua2 str. Aqua2. prokMSA_id:021295 AF324205 beta clone pA3178 prokMSA_id:035403 AF385528 Leptothrix sp. oral clone AV011a prokMSA_id:065430 AF513089 clone 15A prokMSA_id:065422 AF513100 clone 62 prokMSA_id:065415 AF513107 clone 8 prokMSA_id:089073 AF522997 Aquabacterium sp. clone I-17 prokMSA_id:089220 AF522998 Aquabacterium sp. clone J-21 prokMSA_id:088976 AF523008 Aquabacterium sp. clone H-8 prokMSA_id:088640 AF523020 Aquabacterium sp. clone C-19 prokMSA_id:090433 AF523025 Aquabacterium sp. clone I-18 prokMSA_id:061846 AF529318 beta clone CLi22 prokMSA_id:055284 AJ319543 beta clone Michigan-11 prokMSA_id:064782 AJ319544 beta clone Michigan-4 prokMSA_id:064779 AJ319545 beta clone Michigan-5 prokMSA_id:056335 AJ319546 beta clone Michigan-6 prokMSA_id:064776 AJ319547 beta clone Michigan-8 prokMSA_id:064774 AJ319548 beta clone Poland-18 prokMSA_id:064773 AJ319549 beta clone Poland-8 prokMSA_id:064763 AJ319562 beta clone Poland-10-QC prokMSA_id:055451 AJ319564 beta clone Poland-12-QC prokMSA_id:064759 AJ319566 beta clone Poland-20-QC prokMSA_id:064756 AJ319568 beta clone Thailand-12-QC prokMSA_id:064758 AJ319570 beta clone Thailand-19-QC prokMSA_id:056024 AJ319572 beta clone Thailand-3-QC prokMSA_id:064751 AJ319573 beta clone Thailand-4-QC prokMSA_id:064752 AJ319574 beta clone Thailand-5-QC prokMSA_id:051521 AJ421916 beta clone Elb59 prokMSA_id:050434 AJ422173 beta clone Spb280 prokMSA_id:026468 AJ422175 beta clone Spb293 prokMSA_id:042874 AY050585 clone GOUTA14 prokMSA_id:060907 AY135860 clone SG1-2 prokMSA_id:079181 AY187348 clone csbio160390 prokMSA_id:079268 AY187349 clone csbio160365 prokMSA_id:079506 AY187392 clone csbio160206 prokMSA_id:082261 AY193940 clone SB108 prokMSA_id:081133 AY214206 clone ZZ15C9 prokMSA_id:081341 AY214207 clone ZZ15C11 prokMSA_id:081113 AY214209 clone ZZ17C1 prokMSA_id:096716 AY375072 clone B35 prokMSA_id:007170 L33974 Leptothrix discophora str. SP-6 ATCC 51168. prokMSA_id:007155 U51102 str. BrG2. prokMSA_id:007171 X97070 Leptothrix cholodnii str. Mulder 5 CCM 1827. 2.28.2.9.5.4.028 OTU 1 seq prokMSA_id:045838 AF236009 Beta A1004 2.28.2.9.5.4.029 OTU 1 seq prokMSA_id:060905 AY135864 clone SG1-11 2.28.2.9.5.4.030 OTU 1 seq prokMSA_id:064441 AY102880 clone BCM1-36B 2.28.2.9.5.4.031 OTU 1 seq prokMSA_id:066853 AY096161 clone F2-23 2.28.2.9.5.4.032 OTU 1 seq prokMSA_id:067740 AB062145 clone:pBSB1.8 2.28.2.9.5.4.035 OTU 1 seq prokMSA_id:075220 AY154525 earthworm intestine clone ew63 2.28.2.9.5.4.036 OTU 1 seq prokMSA_id:079110 AY187347 clone csbio160329 2.28.2.9.5.4.037 OTU 1 seq prokMSA_id:079115 AY187391 clone csbio160166 2.28.2.9.5.4.038 OTU 1 seq prokMSA_id:079221 AY187387 clone csbio160130 2.28.2.9.5.4.039 OTU 1 seq prokMSA_id:079227 AY187351 clone csbio160121 2.28.2.9.5.4.040 OTU 1 seq prokMSA_id:079354 AY187390 clone csbio160193 2.28.2.9.5.4.041 OTU 1 seq prokMSA_id:079396 AY187377 clone csbio160160 2.28.2.9.5.4.044 OTU 1 seq prokMSA_id:079564 AY187393 clone csbio160180 2.28.2.9.5.4.045 OTU 6 seqs prokMSA_id:079624 AB087569 Leptothrix sp. L4 prokMSA_id:079907 AB087570 Leptothrix sp. L5 prokMSA_id:079724 AB087571 Leptothrix sp. L10 prokMSA_id:080008 AB087573 Leptothrix sp. L14 prokMSA_id:080313 AB087574 Leptothrix sp. L16 prokMSA_id:080362 AB087576 Leptothrix sp. L18 2.28.2.9.5.4.047 OTU 43 seqs prokMSA_id:007145 AB003623 Roseateles depolymerans str. 61A DSM 11813 . prokMSA_id:007157 AB003624 Roseateles depolymerans str. 61B2. prokMSA_id:007149 AB003625 Roseateles depolymerans str. 61B2 DSM 11814 . prokMSA_id:007163 AB003626 Roseateles depolymerans str. 61B2 DSM 11814 . prokMSA_id:007150 AB006851 Matsuebacter chitosanotabidus. prokMSA_id:007159 AB013409 str. MB7. prokMSA_id:007160 AB013424 str. MC11. prokMSA_id:007161 AB013425 str. MC12. prokMSA_id:007146 AB021407 DSM 654. prokMSA_id:007148 AB022678 str. MBIC3293. prokMSA_id:037911 AB024306 Matsuebacter sp. 13 prokMSA_id:037907 AB024307 Matsuebacter chitosanotabidus prokMSA_id:063564 AB069808 clone:CS8.30 prokMSA_id:058516 AB072711 clone:pHAuB-18 prokMSA_id:026559 AB074722 Beta S-N0-20 prokMSA_id:039593 AB074725 Beta S-N0-9A prokMSA_id:024880 AB074727 Beta S-N1-18A prokMSA_id:007147 AF068803 clone VC2.1 Bac29. prokMSA_id:043210 AF236006 Beta A0618 prokMSA_id:040534 AF236007 Beta A0647 prokMSA_id:019409 AF236008 Beta A1040 prokMSA_id:048820 AF324206 beta clone pA42B412 prokMSA_id:019861 AF368755 Pseudomonas saccharophila prokMSA_id:042662 AF371861 clone p-3415-SwA2 prokMSA_id:022032 AF422592 clone t018 prokMSA_id:034637 AF422594 clone t020 prokMSA_id:028560 AF445700 beta clone SM1G08 prokMSA_id:080990 AF468327 clone ARKMP-82 prokMSA_id:074515 AF479324 Glacial ice CanDirty12 prokMSA_id:061836 AF529323 beta clone CLi117 prokMSA_id:084642 AJ440994 Antarctic R-8875 strain R-8875 prokMSA_id:077923 AJ496446 Beta CTE108 strain CTE108 prokMSA_id:094848 AJ583173 beta- clone S15B-MN8 prokMSA_id:094357 AJ583174 beta- clone S15B-MN114 prokMSA_id:059179 AY136099 Beta KIN192 prokMSA_id:076598 AY162912 clone ZB-Z57 prokMSA_id:076437 AY162914 clone ZB-Z31 prokMSA_id:081953 AY169418 Variovorax paradoxus clone 1-42 prokMSA_id:079492 AY187342 clone csbio160367 prokMSA_id:079334 AY187343 clone csbio160307 prokMSA_id:081741 AY227003 beta clone ARKMP-94 prokMSA_id:090347 AY299334 Beta KNU3 prokMSA_id:091986 AY345396 G23 2.28.2.9.5.4.048 OTU 1 seq prokMSA_id:081204 AY187500 clone 109 2.28.2.9.5.4.049 OTU 1 seq prokMSA_id:081266 AY187413 clone SA46 2.28.2.9.5.4.050 OTU 1 seq prokMSA_id:082250 AY218609 clone KD3-41 2.28.2.9.5.4.051 OTU 4 seqs prokMSA_id:029425 AJ421923 beta clone Elb123 prokMSA_id:023589 AJ422174 beta clone Spb283 prokMSA_id:082480 AJ556799 Comamonadaceae MWH55 prokMSA_id:079460 AY187346 clone csbio160321 2.28.2.9.5.4.052 OTU 1 seq prokMSA_id:097646 AY375076 clone B488 2.28.2.9.5.4.999 poor quality 163 seqs prokMSA_id:034330 AB010607 clone ASB008 prokMSA_id:035485 AB010609 clone ASB022 prokMSA_id:032817 AB010610 clone ASB023 prokMSA_id:019792 AB010612 clone ASB027 prokMSA_id:007162 AB013434 str. YB11. prokMSA_id:080585 AB087572 Leptothrix sp. L11 prokMSA_id:079862 AB087575 Leptothrix sp. L17 prokMSA_id:084843 AB097978 Beta ANRB2-1 prokMSA_id:084291 AB097980 Beta ANRB2-7 prokMSA_id:084691 AB097981 Beta ANRB2-8 prokMSA_id:082662 AB097982 Beta ANRB3-1 prokMSA_id:084095 AB097994 Beta ANRB11-3 prokMSA_id:083487 AB097996 Beta ANRB12-1 prokMSA_id:084321 AB097997 Beta ANRB13-1 prokMSA_id:082831 AB097998 Beta ANRB15-3 prokMSA_id:083860 AB098000 Beta ANRB20-1 prokMSA_id:085697 AB098001 Beta ANRB20-2 prokMSA_id:085318 AB098007 Beta ANRB27-8 prokMSA_id:084976 AB098008 Beta ANRB29-2 prokMSA_id:084844 AB098009 Beta ANRB29-3 prokMSA_id:086036 AB098010 Beta ANRW3-1 prokMSA_id:083810 AB098013 Beta ANRW8-5 prokMSA_id:082577 AB098017 Beta ANRW13-1 prokMSA_id:083081 AB107159 Beta K-2060 parital prokMSA_id:020655 AF026392 Beta SCB53 prokMSA_id:021573 AF057305 MT1 prokMSA_id:019019 AF058384 clone MT14 prokMSA_id:038310 AF058793 clone GPMT16 prokMSA_id:018324 AF061574 CMT35P prokMSA_id:053586 AF083577 Amazonian soil M51b prokMSA_id:029285 AF083580 Amazonian soil M55 prokMSA_id:007152 AF089856 Aquabacterium Aqua1a str. Aqua1a. prokMSA_id:007153 AF089857 Aquabacterium Aqua1b str. Aqua1b. prokMSA_id:007166 AF089859 Aquabacterium Aqua3 str. Aqua3. prokMSA_id:069862 AF097825 clone 49530 prokMSA_id:027600 AF148973 Aquatic RUB_R2A_15 prokMSA_id:029055 AF175588 WJGRT-11 prokMSA_id:072339 AF175596 WJGRT-31 prokMSA_id:023205 AF175607 WJGRT-62 prokMSA_id:017474 AF175619 WJGRT-78 prokMSA_id:033296 AF175626 WJGRT-91 prokMSA_id:034130 AF175630 WJGRT-100 prokMSA_id:030997 AF226263 maize root Zmrc87 prokMSA_id:034949 AF226265 maize root Zmrc9 prokMSA_id:042449 AF240475 atmospheric APB3C-15 prokMSA_id:032217 AF245320 SA5 prokMSA_id:040326 AF289881 beta Kmlps3-5 prokMSA_id:017008 AF308877 arsenic resistant soil DGGE-1 prokMSA_id:068083 AF365661 clone BM89DS6BbC5 prokMSA_id:039642 AF392642 clone CEB2 prokMSA_id:038093 AF428718 clone CRP99-64 prokMSA_id:051581 AF428785 clone CR98-5-55 prokMSA_id:034250 AF428921 clone CR98-35-39 prokMSA_id:050056 AF429084 clone CR99-7-50 prokMSA_id:076702 AF431280 beta clone S36.27SM prokMSA_id:030725 AF440281 clone PO1 prokMSA_id:068496 AF486792 clone E5-46-HS3P-314 prokMSA_id:067461 AF493263 clone pHS46 prokMSA_id:067456 AF493273 clone pHS59 prokMSA_id:067455 AF493277 clone pHS86 prokMSA_id:067454 AF493279 clone pHS88 prokMSA_id:067451 AF493284 clone pHS14 prokMSA_id:067449 AF493287 clone pHS19 prokMSA_id:056371 AF493289 clone pHS21 prokMSA_id:067448 AF493290 clone pHS22 prokMSA_id:056580 AF493292 clone pHS27 prokMSA_id:067443 AF493293 clone pHS28 prokMSA_id:067442 AF493297 clone pHS32 prokMSA_id:067441 AF493298 clone pHS33 prokMSA_id:067440 AF493300 clone pHS35 prokMSA_id:067439 AF493301 clone pHS38 prokMSA_id:067425 AF493319 clone pHS119 prokMSA_id:067082 AF499383 clone JCL1-29 prokMSA_id:067079 AF499384 clone JCL1-20 prokMSA_id:067078 AF499385 clone JCL1-43 prokMSA_id:084225 AF499885 clone ABLC71 prokMSA_id:090472 AF523004 Aquabacterium sp. clone C-9 prokMSA_id:090187 AF523006 Aquabacterium sp. clone D-12 prokMSA_id:088838 AF523016 Aquabacterium sp. clone D-5 prokMSA_id:089169 AF523017 Aquabacterium sp. clone C-20 prokMSA_id:088142 AF523022 Aquabacterium sp. clone C-7 prokMSA_id:089328 AF523024 Aquabacterium sp. clone D-11 prokMSA_id:089113 AF523027 Aquabacterium sp. clone C-12 prokMSA_id:089760 AF523034 Aquabacterium sp. clone C-11 prokMSA_id:089776 AF523042 Aquabacterium sp. clone B-14 prokMSA_id:090197 AF523043 Aquabacterium sp. clone C-23 prokMSA_id:090435 AF523044 Aquabacterium sp. clone D-2 prokMSA_id:088708 AF523055 Aquabacterium sp. clone D-24 prokMSA_id:073973 AF531024 Beta Mwo3 prokMSA_id:057839 AF546952 clone E5-46-BH1-12/7/98-025 prokMSA_id:047536 AJ225383 Beta species ; clone 29 prokMSA_id:047505 AJ232786 clone TRS9 prokMSA_id:022508 AJ233542 clone WR1115 prokMSA_id:074809 AJ233545 clone WR1131 prokMSA_id:044223 AJ292854 WR824 clone WR824 prokMSA_id:069029 AJ292855 WR837 clone WR837 prokMSA_id:069028 AJ292858 WR833 clone WR833 prokMSA_id:054012 AJ295400 Rape rhizosphere M9044 prokMSA_id:036639 AJ295411 Rape rhizosphere M9074 prokMSA_id:038080 AJ295412 Rape rhizosphere M9078 prokMSA_id:035894 AJ295414 Rape rhizosphere M9088 prokMSA_id:043263 AJ295415 Rape rhizosphere M9092 prokMSA_id:053961 AJ295417 Rape rhizosphere M9100 prokMSA_id:041739 AJ295555 rape rhizosphere wr0118 prokMSA_id:031295 AJ311418 maize rhizosphere c4_45 prokMSA_id:019828 AJ404548 beta- B-1 prokMSA_id:026333 AJ404578 US4 prokMSA_id:054405 AJ421895 clone Alt9-K54 prokMSA_id:042649 AJ431297 clone 1_27 prokMSA_id:033857 AJ431298 clone 1_28a prokMSA_id:049280 AJ431299 clone 1_28b prokMSA_id:045593 AJ431308 clone 2_11 prokMSA_id:057049 AJ518501 clone Qui2P2-2 prokMSA_id:057042 AJ518506 clone Qui2P2-3 prokMSA_id:093659 AJ582574 clone M10-01 prokMSA_id:039550 AY006883 rumen prokMSA_id:061548 AY043666 beta clone NOW2.69WL prokMSA_id:061451 AY043781 beta clone NMW3.98WL prokMSA_id:061444 AY043787 beta clone NMS8.122WL prokMSA_id:075158 AY157117 beta isolate HS-60 prokMSA_id:075033 AY162911 clone ZB-Z30 prokMSA_id:077076 AY168734 clone HC-11 prokMSA_id:081945 AY187399 clone SA15 prokMSA_id:081555 AY187408 clone SA33 prokMSA_id:082340 AY187411 clone SA40 prokMSA_id:081883 AY187418 clone SA60 prokMSA_id:081463 AY187420 clone SA63 prokMSA_id:081418 AY187425 clone SA70 prokMSA_id:081993 AY187429 clone SA89 prokMSA_id:082123 AY187431 clone SA102 prokMSA_id:081321 AY187434 clone SA107A prokMSA_id:081037 AY187497 clone SC101 prokMSA_id:082274 AY187519 clone SD70 prokMSA_id:082200 AY187520 clone SD73 prokMSA_id:081199 AY187540 clone SD143 prokMSA_id:080349 AY192310 beta clone P3-3G prokMSA_id:080406 AY192311 beta clone P3-4A prokMSA_id:080958 AY193009 clone GalA92 prokMSA_id:080500 AY193042 clone GalB36 prokMSA_id:082040 AY193929 clone SB76 prokMSA_id:081119 AY193930 clone SB80 prokMSA_id:082425 AY193933 clone SB94 prokMSA_id:081384 AY193934 clone SB95 prokMSA_id:081222 AY193937 clone SB99 prokMSA_id:081876 AY193942 clone SB110 prokMSA_id:081630 AY193959 clone SC113 prokMSA_id:086171 AY251228 beta clone 18B_1 prokMSA_id:091152 AY345570 clone T7-3F01 prokMSA_id:093988 AY357980 beta cEV41 prokMSA_id:093378 AY364040 beta clone cRI12c prokMSA_id:096616 AY394629 beta clone N10-13 prokMSA_id:097859 AY395217 clone O10R prokMSA_id:007144 L33979 Leptothrix cholodnii str. Mulder 5 LMG 7171. prokMSA_id:007167 L33981 Leptothrix sp. str. NC-1. prokMSA_id:007172 U45675 clone AI303. prokMSA_id:007176 U45698 clone CL01. prokMSA_id:007143 X84494 str. SBR1060. prokMSA_id:007142 X84495 str. SBR1061. prokMSA_id:007168 X84509 str. SBR1077. prokMSA_id:007169 X84547 str. SBR2002. prokMSA_id:016758 X89910 Rubrivivax-like sp. PC5.4B strain PC5.4B prokMSA_id:023073 X89918 Rubrivivax-like sp. PC5.6 strain PC5.6 prokMSA_id:007141 X91175 clone G4. 2.28.2.9.6 STR.SBR1074_SUBGROUP 29 seqs 2.28.2.9.6.001 OTU 1 seq prokMSA_id:029208 AF445131 clone Tc71 2.28.2.9.6.999 poor quality 28 seqs prokMSA_id:052018 AB010628 clone ASB013 prokMSA_id:024079 AF078317 Grassland soil clone sl1_001 prokMSA_id:037627 AF078362 Grassland soil clone sl2_501 prokMSA_id:041746 AF314445 PHOS-HC06 prokMSA_id:028392 AF392640 clone CDG10 prokMSA_id:077163 AF431222 beta clone N11.97WL prokMSA_id:076082 AF431223 beta clone N11.99WL prokMSA_id:075505 AF431225 beta clone N12.05WL prokMSA_id:076669 AF431237 beta clone C17.01WL prokMSA_id:075301 AF431249 beta clone S22.54WL prokMSA_id:077041 AF431253 beta clone N27.100SM prokMSA_id:075970 AF431292 beta clone S37.42SM prokMSA_id:076037 AF431318 beta clone S51.39PG prokMSA_id:074922 AF431320 beta clone S51.60PG prokMSA_id:023828 AJ244349 Riz1073 prokMSA_id:032245 AJ244355 Riz1079 prokMSA_id:058021 AY150279 beta DGGE gel band MG10-JLMBR prokMSA_id:083582 AY214619 beta clone SL2-1-F4 prokMSA_id:086652 AY214684 beta clone SL2-2-E9R prokMSA_id:085074 AY242709 soil clone Tc129-7 prokMSA_id:088138 AY289442 soil clone DS-107 prokMSA_id:088482 AY289443 soil clone ABS-503 prokMSA_id:007178 X84450 str. SBR1002. prokMSA_id:007180 X84464 str. SBR1020. prokMSA_id:007177 X84476 str. SBR1033. prokMSA_id:007179 X84506 str. SBR1074. prokMSA_id:007181 X84567 str. SBR2025. prokMSA_id:007182 X84577 str. SBR2038. 2.28.2.10 BURKHOLDERIA_GROUP 920 seqs 2.28.2.10.1 BUR.NORIMBERGENSIS_SUBGROUP 42 seqs 2.28.2.10.1.001 OTU 32 seqs prokMSA_id:072667 AF139171 Pandoraea norimbergensis prokMSA_id:072865 AF139172 Pandoraea apista strain LMG 18089 prokMSA_id:052177 AF139173 Pandoraea apista strain LMG 16407 prokMSA_id:073443 AF139174 Pandoraea pnomenusa prokMSA_id:035338 AF139175 Pandoraea pulmonicola prokMSA_id:072789 AF139176 Pandoraea sputorum prokMSA_id:049796 AF247691 Pandoraea sp. G3308 prokMSA_id:017884 AF247692 Pandoraea sp. G5056 prokMSA_id:070855 AF247693 Pandoraea sp. G5084 prokMSA_id:022226 AF247694 Pandoraea sp. G7835 prokMSA_id:035988 AF247695 Pandoraea sp. G8107 prokMSA_id:046842 AF247696 Pandoraea sp. G9278 prokMSA_id:070261 AF247697 Pandoraea sp. G9805 prokMSA_id:025682 AF247698 Pandoraea sp. H652 prokMSA_id:070742 AF247699 Pandoraea sp. G3307 prokMSA_id:060992 AF532595 Pandoraea sp. LY prokMSA_id:007184 AJ011509 Burkholderia IpA-51 str. IpA-51. prokMSA_id:048497 AJ313026 Burkholderia sp. MN 182.2 isolate MN 182.2 prokMSA_id:078326 AJ514451 clone AS2o2 prokMSA_id:078188 AJ514453 clone AS2o4 prokMSA_id:063605 AY043377 Pandoraea sp. AU1775 prokMSA_id:088090 AY268168 Pandoraea pnomenusa strain 2001008157 prokMSA_id:090734 AY268169 Pandoraea sp. 2001032141 prokMSA_id:089534 AY268170 Pandoraea pnomenusa strain CCUG 38742 prokMSA_id:090020 AY268171 Pandoraea sp. CCUG 39680 prokMSA_id:089390 AY268172 Pandoraea apista strain CCUG 38412 prokMSA_id:089030 AY268173 Pandoraea pulmonicola strain CCUG 38759 prokMSA_id:088183 AY268174 Pandoraea norimbergensis strain CCUG 39188 prokMSA_id:092954 AY360334 Pandoraea pulmonicola prokMSA_id:092189 AY360339 Pandoraea apista prokMSA_id:007185 X92188 Burkholderia JB1 str. JB1. prokMSA_id:007183 Y09879 Burkholderia norimbergensis str. R2 DSM 11628 . 2.28.2.10.1.002 OTU 1 seq prokMSA_id:066505 AY100582 clone cvf70138 2.28.2.10.1.003 OTU 1 seq prokMSA_id:077612 AJ508159 clone J2_15 2.28.2.10.1.004 OTU 1 seq prokMSA_id:078307 AJ508168 clone J2_29 2.28.2.10.1.005 OTU 1 seq prokMSA_id:092048 AY359845 clone cEIII54 2.28.2.10.1.006 OTU 1 seq prokMSA_id:093285 AJ582042 clone JG36-GS-3 2.28.2.10.1.999 poor quality 5 seqs prokMSA_id:025880 AF083566 Amazonian soil M25 prokMSA_id:034836 AJ003767 beta clone Ijs8 prokMSA_id:077665 AJ508174 clone J2_47 prokMSA_id:077841 AJ508176 clone J2_53 prokMSA_id:023060 U81728 clone vadinHA34 2.28.2.10.2 MEALYBUG_SYMBIONTS 29 seqs 2.28.2.10.2.001 OTU 1 seq prokMSA_id:007188 M68890 endosymbiont of mealybug Pseudococcus maritimus. 2.28.2.10.2.007 OTU 2 seqs prokMSA_id:042363 AB030021 Beta-symbiont of Antonina crawii prokMSA_id:063964 AF476079 Candidatus Tremblaya princeps from Antonina pretiosa and 23S genes 2.28.2.10.2.008 OTU 3 seqs prokMSA_id:055005 AF322017 Planococcus citri beta- endosymbiont prokMSA_id:063951 AF476091 Candidatus Tremblaya princeps from Planococcus citri and 23S genes prokMSA_id:063949 AF476092 Candidatus Tremblaya princeps from Planococcus ficus and 23S genes 2.28.2.10.2.010 OTU 11 seqs prokMSA_id:055941 AF476082 Candidatus Tremblaya princeps from Dysmicoccus brevipes and 23S genes prokMSA_id:063961 AF476083 Candidatus Tremblaya princeps from Dysmicoccus neobrevipes and 23S genes prokMSA_id:063959 AF476084 Candidatus Tremblaya princeps from Erium globosum and 23S genes prokMSA_id:063953 AF476093 Candidatus Tremblaya princeps from Pseudococcus longispinus and 23S genes prokMSA_id:063948 AF476095 Candidatus Tremblaya princeps from Pseudococcus viburni and 23S genes prokMSA_id:063947 AF476097 Candidatus Tremblaya princeps from Vryburgia amaryllidis and 23S genes prokMSA_id:063946 AF476098 Candidatus Tremblaya princeps from Vryburgia brevicruris and 23S genes prokMSA_id:063992 AF481102 Candidatus Tremblaya princeps MviN mviN cds; protein L13 rpL13 protein S9 rpS9 putative protein HesB hesB dihydroxyacid dehydrase ilvD 5-enolpyruvylshikimate-3-phosphate synthase aroA protein S1 rpS1 protein S16 rpS16 protein L19 rpL19 5 10-methylenetetrahydrofolate reductase metF chaperone Hsp60 groEL chaperone Hsp10 groES polymerase alpha subunit dnaE valine sensitive acetolactate synthase III subunit ilvI ketol-acid reductoisomerase ilvC alpha-isopropylmalate synthase leuA and protein S15 rpS15 genes complete cds; 23S and 5S genes complete ; putative protein YabC yabC polymerase III epsilon subunit dnaQ cell division protein ftsJ arginosuccinate lyase argH and protein L31 rpL31 genes complete cds; and unknown genes prokMSA_id:063994 AF481103 Candidatus Tremblaya princeps transaldolase tal phosphoribosylpyrophosphate synthetase prs and protein S15 rpS15 genes complete cds; 23S and 5S genes complete ; protein L11 rpL11 protein L10 rpL10 protein L7/L12 rpL7/12 polymerase beta-subunit rpoB polymerase beta prime-subunit rpoC protein S12 rpS12 protein S7 rpS7 elongation factor G fus elongation factor Tu tuf protein S10 rpS10 protein L3 rpL3 protein L4 rpL4 and protein L2 rpL2 genes complete cds; and unknown genes prokMSA_id:007187 M68888 endosymbiont of mealybug Dysmicoccus neobrivipes. prokMSA_id:007186 M68889 endosymbiont of mealybug Pseudococcus longispinus. 2.28.2.10.2.011 OTU 3 seqs prokMSA_id:063962 AF476081 Candidatus Tremblaya princeps from Cyphonococcus alpinus and 23S genes prokMSA_id:063950 AF476094 Candidatus Tremblaya princeps from Paracoccus nothofagicola and 23S genes prokMSA_id:063952 AF476096 Candidatus Tremblaya princeps from Sarococcus comis and 23S genes 2.28.2.10.2.012 OTU 3 seqs prokMSA_id:063963 AF476077 Candidatus Tremblaya princeps from Australicoccus grevilleae and 23S genes prokMSA_id:063956 AF476087 Candidatus Tremblaya princeps from Melanococcus albizziae and 23S genes prokMSA_id:063954 AF476090 Candidatus Tremblaya princeps from Nipaecoccus exocarpi and 23S genes 2.28.2.10.2.013 OTU 1 seq prokMSA_id:063955 AF476089 Candidatus Tremblaya princeps from Maconellicoccus hirsutus and 23S genes 2.28.2.10.2.014 OTU 1 seq prokMSA_id:063957 AF476088 Candidatus Tremblaya princeps from Maconellicoccus australiensis and 23S genes 2.28.2.10.2.015 OTU 2 seqs prokMSA_id:063960 AF476085 Candidatus Tremblaya princeps from Ferrisia malvastra and 23S genes prokMSA_id:063958 AF476086 Candidatus Tremblaya princeps from Ferrisia sp. and 23S genes 2.28.2.10.2.016 OTU 1 seq prokMSA_id:063965 AF476078 Candidatus Tremblaya princeps from Amonostherium lichtensioides and 23S genes 2.28.2.10.2.017 OTU 1 seq prokMSA_id:063966 AF476080 Candidatus Tremblaya princeps from Anisococcus ephedrae and 23S genes 2.28.2.10.3 BUR.ANDROPOGONIS_SUBGROUP 12 seqs 2.28.2.10.3.001 OTU 1 seq prokMSA_id:007191 AF173823 clone LB3-81. 2.28.2.10.3.002 OTU 1 seq prokMSA_id:007190 AB021422 Pseudomonas woodsii ATCC 19311. 2.28.2.10.3.003 OTU 1 seq prokMSA_id:007189 X67037 Burkholderia andropogonis ATCC 23061 . 2.28.2.10.3.004 OTU 1 seq prokMSA_id:018748 AF445123 clone Tc63 2.28.2.10.3.005 OTU 1 seq prokMSA_id:064015 AB087358 clone:F31 2.28.2.10.3.006 OTU 1 seq prokMSA_id:041478 AB074735 Beta S-Nnd-12A 2.28.2.10.3.007 OTU 1 seq prokMSA_id:047358 AF445124 clone Tc64 2.28.2.10.3.008 OTU 1 seq prokMSA_id:074505 AJ292658 WD296 clone WD296 2.28.2.10.3.009 OTU 2 seqs prokMSA_id:076131 AJ519655 beta clone GuBH2-AD-29 prokMSA_id:074893 AJ519656 beta clone GuBH2-AG-43 2.28.2.10.3.999 poor quality 2 seqs prokMSA_id:068352 AF407358 Burkholderia sp. clone Re07 prokMSA_id:088415 AJ576113 Pseudomonas sp. clone 22 2.28.2.10.4 BUR.GLATHEI_SUBGROUP 529 seqs 2.28.2.10.4.005 OTU 2 seqs prokMSA_id:007226 AB021423 Burkholderia caryophylli ATCC 25418. prokMSA_id:007224 X67039 Burkholderia caryophylli ATCC 25418. 2.28.2.10.4.006 OTU 1 seq prokMSA_id:007225 AF013531 unnamed organism. 2.28.2.10.4.007 OTU 1 seq prokMSA_id:007223 AF061872 Burkholderia RP007 str. RP007. 2.28.2.10.4.010 OTU 5 seqs prokMSA_id:007218 AB015530 str. BD1-33. prokMSA_id:019103 AF164059 Diazotroph str. BA126 prokMSA_id:026180 AF227856 str. 96444 prokMSA_id:071461 AJ318182 beta clone BIsii8 prokMSA_id:096037 Y14146 Burkholderia sp. isolate ISR06 2.28.2.10.4.011 OTU 2 seqs prokMSA_id:007215 AB024310 Burkholderia kuranei. prokMSA_id:007216 AJ238360 Burkholderia brasilensis str. M130. 2.28.2.10.4.012 OTU 2 seqs prokMSA_id:007213 AF074711 Burkholderia EN-B3. prokMSA_id:007214 AF074712 Burkholderia EN-B9. 2.28.2.10.4.026 OTU 1 seq prokMSA_id:007197 U62844 clone RB23. 2.28.2.10.4.028 OTU 4 seqs prokMSA_id:044507 AF445087 clone Tc3 prokMSA_id:017531 AF445099 clone Tc30 prokMSA_id:052348 AF445105 clone Tc39 prokMSA_id:084790 AY242708 soil clone Tc131-35 2.28.2.10.4.029 OTU 1 seq prokMSA_id:020848 AF418941 clone HTA1 2.28.2.10.4.031 OTU 1 seq prokMSA_id:021765 AF234707 sludge A21b 2.28.2.10.4.032 OTU 1 seq prokMSA_id:024899 AF361021 Burkholderia sp. NAP1 2.28.2.10.4.036 OTU 18 seqs prokMSA_id:055726 AB087742 Burkholderia sp. LR1 prokMSA_id:030241 AF164045 Burkholderia tropicalis strain AB98 prokMSA_id:007194 AF184929 str. TFD3. prokMSA_id:047552 AF262932 Burkholderia sp. JS150 prokMSA_id:026099 AF263278 Burkholderia sacchari prokMSA_id:029016 AF312213 Burkholderia sp. BM273 complete prokMSA_id:017796 AF312214 Burkholderia sp. BM16 complete prokMSA_id:037791 AF364859 Burkholderia sp. AB119 prokMSA_id:049852 AJ420332 Burkholderia tropicalis strain Ppe8 prokMSA_id:077530 AY128103 Burkholderia tropicalis strain MTo-293 complete prokMSA_id:077461 AY128104 Burkholderia tropicalis strain MTo-672 complete prokMSA_id:077289 AY128105 Burkholderia tropicalis strain MOc-725 complete prokMSA_id:080740 AY221955 Burkholderia unamae strain MCo-762 prokMSA_id:080462 AY221956 Burkholderia unamae strain MTl-641 prokMSA_id:080812 AY221957 Burkholderia unamae strain SCCu-23 prokMSA_id:097650 AY391282 Burkholderia unamae isolate GMC.11 prokMSA_id:024171 Z88568 isolate HNSM13 prokMSA_id:045510 Z88571 isolate HNSS13 2.28.2.10.4.037 OTU 1 seq prokMSA_id:026920 AJ318189 clone BItii37 2.28.2.10.4.040 OTU 3 seqs prokMSA_id:069874 AF164043 Diazotroph str. AB48 prokMSA_id:031442 AF364860 Burkholderia sp. AB120 prokMSA_id:096893 AY391283 Burkholderia unamae isolate TR3.4 2.28.2.10.4.041 OTU 1 seq prokMSA_id:032837 AJ421933 beta clone Elb205 2.28.2.10.4.042 OTU 1 seq prokMSA_id:034343 Y12367 Amoebobacter pedioformis 2.28.2.10.4.043 OTU 1 seq prokMSA_id:036067 AJ252633 Agricultural soil clone SC-I-39 2.28.2.10.4.045 OTU 120 seqs prokMSA_id:018587 AB041772 Burkholderia sp. TH2 prokMSA_id:052024 AB066231 Burkholderia sp. PJ310 prokMSA_id:027615 AB066233 Burkholderia sp. PI500 prokMSA_id:025816 AB066234 Burkholderia sp. PJ604 prokMSA_id:007203 AF052387 Burkholderia 'SAP II' str. SAP II. prokMSA_id:007199 AF068011 Burkholderia VUN10013 str. VUN 10 013. prokMSA_id:030855 AF145873 Metal-contaminated soil clone K20-88 prokMSA_id:007196 AF184926 str. TFD13. prokMSA_id:007212 AF184927 str. TFD2. prokMSA_id:007195 AF184928 str. TFD20. prokMSA_id:007193 AF184931 str. TFD6. prokMSA_id:040058 AF210314 Burkholderia sp. HY1 complete prokMSA_id:020058 AF214130 Burkholderia sp. P18G1134 prokMSA_id:016696 AF214131 Burkholderia sp. P18G1120 prokMSA_id:029801 AF214132 Burkholderia sp. P18G1145 prokMSA_id:042224 AF215704 Burkholderia sp. LMG 19076 prokMSA_id:028307 AF215705 Burkholderia sp. LMG 16225 prokMSA_id:053786 AF215706 Burkholderia sp. LMG 16307 prokMSA_id:020984 AF247492 Burkholderia sp. A6.33GD prokMSA_id:050006 AF247493 Burkholderia sp. C4.7 prokMSA_id:053380 AF247494 Burkholderia sp. S2.1 prokMSA_id:074759 AF247495 Burkholderia sp. S4.11 prokMSA_id:076774 AF431232 beta clone C16.35WL prokMSA_id:077183 AF431243 beta clone S21.22WL prokMSA_id:031797 AF439777 Burkholderia sp. JR7B3 prokMSA_id:021266 AF448044 Burkholderia sp. SOD-5b prokMSA_id:073256 AF452132 Burkholderia sp. LMG 21262 prokMSA_id:068457 AF459796 Symbiont cf. Burkholderia of Acromyrmex octospinosus prokMSA_id:066295 AF506044 Burkholderia sp. LCSAOTU14 prokMSA_id:066264 AF508806 Burkholderia sp. TNFYE-5 prokMSA_id:066044 AF512826 Burkholderia sordicola strain S5-B prokMSA_id:066043 AF512827 Burkholderia sordicola strain SNU 020123 prokMSA_id:007198 AJ011508 Burkholderia sp. str. DhA-54. prokMSA_id:026306 AJ292637 WD202 clone WD202 prokMSA_id:023866 AJ292639 WD227 clone WD227 prokMSA_id:037179 AJ292640 WD258 clone WD258 prokMSA_id:022064 AJ292641 WD263 clone WD263 prokMSA_id:017921 AJ292642 WD266 clone WD266 prokMSA_id:052290 AJ292643 WD268 clone WD268 prokMSA_id:019558 AJ292644 WD285 clone WD285 prokMSA_id:021144 AJ292645 WD289 clone WD289 prokMSA_id:038074 AJ292646 WD2109 clone WD2109 prokMSA_id:051110 AJ292647 WD2114 clone WD2114 prokMSA_id:020881 AJ292648 WD2116 clone WD2116 prokMSA_id:044685 AJ292649 WD210 clone WD210 prokMSA_id:026970 AJ292650 WD211 clone WD211 prokMSA_id:051896 AJ292651 WD221 clone WD221 prokMSA_id:036177 AJ292654 WD251 clone WD251 prokMSA_id:036643 AJ292655 WD253 clone WD253 prokMSA_id:049075 AJ292656 WD255 clone WD255 prokMSA_id:047617 AJ292657 WD279 clone WD279 prokMSA_id:048123 AJ292660 WD2104 clone WD2104 prokMSA_id:032896 AJ292661 WD2120 clone WD2120 prokMSA_id:045873 AJ292662 WD2121 clone WD2121 prokMSA_id:018233 AJ292663 WD2125 clone WD2125 prokMSA_id:039280 AJ292666 WD230 clone WD230 prokMSA_id:018177 AJ292667 WD232 clone WD232 prokMSA_id:035064 AJ292668 WD237 clone WD237 prokMSA_id:042319 AJ292669 WD239 clone WD239 prokMSA_id:036757 AJ292670 WD246 clone WD246 prokMSA_id:038190 AJ292671 WD2106 clone WD2106 prokMSA_id:041467 AJ300686 Burkholderia sp. SH1b strain SH1b prokMSA_id:038660 AJ300687 Burkholderia sp. K14 strain K14 prokMSA_id:019015 AJ300688 Burkholderia sp. S512 strain S512 prokMSA_id:037450 AJ300689 Burkholderia sp. 13SM strain 13SM prokMSA_id:019535 AJ300690 Burkholderia sp. OSR40 strain OSR40 prokMSA_id:021106 AJ300691 Burkholderia sp. RW4 strain RW4 prokMSA_id:042336 AJ300692 Burkholderia sp. RW36 strain RW36 prokMSA_id:020853 AJ300693 Burkholderia sp. WR19X strain WR19X prokMSA_id:016881 AJ300694 Burkholderia sp. GR34 strain GR34 prokMSA_id:027725 AJ300696 Burkholderia sp. OY715 strain OY715 prokMSA_id:050723 AJ300698 Burkholderia sp. NF23 strain NF23 prokMSA_id:080829 AJ544690 Burkholderia fungorum strain Sw120 prokMSA_id:080321 AJ544691 Burkholderia fungorum strain W566 prokMSA_id:034989 AY038617 clone GL182.9 prokMSA_id:069393 AY040359 Burkholderia sp. LMG 20580 prokMSA_id:071813 AY040362 Burkholderia terricola prokMSA_id:071936 AY040365 Burkholderia hospita prokMSA_id:051147 AY049940 Beta A40-2 prokMSA_id:019267 AY049943 Beta A30-1 prokMSA_id:061180 AY080924 clone EOH2 prokMSA_id:068654 AY081989 clone KRA30-09 prokMSA_id:066842 AY096172 clone F2-41 prokMSA_id:058605 AY134849 Burkholderia sp. ICD prokMSA_id:077259 AY154367 Burkholderia glathei isolate Hg 2 prokMSA_id:075249 AY154368 Burkholderia glathei isolate Hg 3 prokMSA_id:075173 AY154369 Burkholderia glathei isolate Hg 4 prokMSA_id:077065 AY154370 Burkholderia glathei isolate Hg 5 prokMSA_id:075371 AY154371 Burkholderia glathei isolate Hg 7 prokMSA_id:076898 AY154372 Burkholderia phenazinium isolate Hg 8 prokMSA_id:075878 AY154373 Burkholderia phenazinium isolate Hg 10 prokMSA_id:075857 AY154374 Burkholderia glathei isolate Hg 11 prokMSA_id:076456 AY154375 Burkholderia phenazinium isolate Hg 14 prokMSA_id:075150 AY154376 Burkholderia phenazinium isolate Hg 16 prokMSA_id:075813 AY154377 Burkholderia glathei isolate Hg 17 prokMSA_id:076415 AY154378 Burkholderia glathei isolate Hg 18 prokMSA_id:076534 AY154379 Burkholderia glathei isolate Hg 19 prokMSA_id:078791 AY177370 Burkholderia sp. 56 prokMSA_id:081481 AY196145 Burkholderia sp. NK27 prokMSA_id:092789 AY238504 Burkholderia sp. 54 prokMSA_id:090537 AY307923 Burkholderia sp. LUP prokMSA_id:093514 AY367008 Burkholderia sp. Eh1-1 prokMSA_id:093743 AY367009 Burkholderia sp. Cs1-4 prokMSA_id:093493 AY367010 Burkholderia sp. Ch3-5 prokMSA_id:093571 AY367011 Burkholderia sp. Ch1-1 prokMSA_id:029226 D87109 Burkholderia sp. prokMSA_id:007202 U37342 Burkholderia sp. prokMSA_id:007201 U37343 Burkholderia sp. prokMSA_id:007192 U37344 Burkholderia sp. prokMSA_id:007200 U86373 Burkholderia LB400 str. LB400. prokMSA_id:007210 U91570 Burkholderia caryophylli str. MCII-8. prokMSA_id:007227 U96935 Burkholderia glathei str. N 15 LMG 14190 . prokMSA_id:007221 U96936 Burkholderia phenazinium str. 1A LMG 2247 . prokMSA_id:007207 U96939 Burkholderia graminis str. C4D1M ATCC 700544 . prokMSA_id:007208 U96940 Burkholderia graminis str. C3A1M. prokMSA_id:007209 U96941 Burkholderia graminis str. AUS35. prokMSA_id:007211 Y17009 Burkholderia caribensis str. MWAP64. prokMSA_id:007219 Y17010 Burkholderia caribiensis str. MWAP71. prokMSA_id:007220 Y17011 Burkholderia caribiensis str. MWAP84. prokMSA_id:007228 Y17052 Burkholderia glathei str. N 15 LMG 14190 . 2.28.2.10.4.046 OTU 1 seq prokMSA_id:038712 AJ252625 Agricultural soil clone SC-I-24 2.28.2.10.4.049 OTU 1 seq prokMSA_id:039961 AJ302311 Burkholderia sp. STM678 strain STM678 2.28.2.10.4.050 OTU 1 seq prokMSA_id:040645 AJ302312 Burkholderia sp. STM815 strain STM815 2.28.2.10.4.052 OTU 6 seqs prokMSA_id:007230 AB025790 Burkholderia NF100. prokMSA_id:093592 AB103080 Burkholderia sp. AK-5 prokMSA_id:041082 AF247496 Burkholderia sp. S4.9 prokMSA_id:039502 AF439776 Burkholderia sp. JRB1 prokMSA_id:074760 AJ292638 WD206 clone WD206 prokMSA_id:092526 AY238505 Burkholderia sp. 13 2.28.2.10.4.053 OTU 1 seq prokMSA_id:046075 AJ252660 Agricultural soil clone SC-I-84 2.28.2.10.4.054 OTU 1 seq prokMSA_id:047096 AF092889 Burkholderia sp. JS150 2.28.2.10.4.055 OTU 1 seq prokMSA_id:049415 AB066232 Burkholderia sp. PJ431 2.28.2.10.4.056 OTU 1 seq prokMSA_id:049998 AF247815 Burkholderia sp. NAH1 2.28.2.10.4.057 OTU 3 seqs prokMSA_id:063267 AF523953 clone FW66 prokMSA_id:063263 AF523956 clone FW2 prokMSA_id:063247 AF523975 clone FW145 2.28.2.10.4.058 OTU 1 seq prokMSA_id:065661 AF507729 soil clone S151 2.28.2.10.4.059 OTU 1 seq prokMSA_id:073771 AF371863 clone p-3623-18B3 2.28.2.10.4.060 OTU 2 seqs prokMSA_id:075333 AF475063 Candidatus Burkholderia kirkii strain 19536779 complete prokMSA_id:075398 AF475065 Candidatus Burkholderia kirkii strain 835396 complete 2.28.2.10.4.061 OTU 1 seq prokMSA_id:076574 AJ534623 beta clone JG36-TzT-215 2.28.2.10.4.062 OTU 1 seq prokMSA_id:076717 AY154565 earthworm cast clone c201 2.28.2.10.4.063 OTU 1 seq prokMSA_id:076745 AY154522 earthworm intestine clone ew58 2.28.2.10.4.064 OTU 1 seq prokMSA_id:077134 AY154511 earthworm intestine clone ew34 2.28.2.10.4.065 OTU 1 seq prokMSA_id:077828 AB088048 Burkholderia sp. VE22 2.28.2.10.4.066 OTU 1 seq prokMSA_id:084108 AY221080 clone CCU24 2.28.2.10.4.067 OTU 1 seq prokMSA_id:084891 AY214697 beta clone SL2-2-D6F 2.28.2.10.4.068 OTU 1 seq prokMSA_id:084918 AY214706 beta clone SL2-2-F8F 2.28.2.10.4.069 OTU 1 seq prokMSA_id:085308 AY214707 beta clone SL2-2-C11F 2.28.2.10.4.070 OTU 1 seq prokMSA_id:088913 AJ576104 Burkholderia sp. clone 23 2.28.2.10.4.071 OTU 1 seq prokMSA_id:092786 AY238506 Burkholderia sp. 14 2.28.2.10.4.072 OTU 1 seq prokMSA_id:098552 AY160866 clone COB P3-26 2.28.2.10.4.999 poor quality 331 seqs prokMSA_id:024140 AB010615 clone ASB034 prokMSA_id:051760 AB011715 beta strain: G12008 prokMSA_id:049542 AB011729 beta strain: G22009 prokMSA_id:041315 AB011731 beta strain: G22017 prokMSA_id:021439 AB011732 beta strain: G22030 prokMSA_id:037311 AB011734 beta strain: G22037 prokMSA_id:028091 AB011745 beta strain: G23015 prokMSA_id:007229 AB021374 Burkholderia glathei str. N 15 ATCC 29195 . prokMSA_id:007222 AB021394 Burkholderia phenazinium str. 1A ATCC 33666. prokMSA_id:030182 AB023613 NIC024 prokMSA_id:084021 AB107189 Beta W-2025 parital prokMSA_id:089185 AB111831 prokMSA_id:089704 AB111834 prokMSA_id:088476 AB111835 prokMSA_id:088418 AB111841 prokMSA_id:089565 AB111842 prokMSA_id:096460 AB114269 Burkholderia sp. P312 prokMSA_id:098470 AB114270 Burkholderia sp. Kas203-3 prokMSA_id:092031 AB116922 Burkholderia sp. clone:LB1 prokMSA_id:030848 AF074713 Burkholderia DH02 prokMSA_id:024010 AF078231 Grassland soil clone saf2_115 prokMSA_id:073057 AF104295 Beta-183 prokMSA_id:017605 AF128748 Soil ic114 prokMSA_id:052754 AF145851 Metal-contaminated soil clone K20-56 prokMSA_id:018636 AF165275 Pasture soil clone HPS-54 prokMSA_id:071787 AF165276 Pasture soil clone HPS-45 prokMSA_id:054564 AF165278 Pasture soil clone HPS-52 prokMSA_id:040029 AF165280 Pasture soil clone HPS-61 prokMSA_id:024356 AF176842 24-D-degrading 001 prokMSA_id:040054 AF176843 24-D-degrading 007 prokMSA_id:042262 AF176848 24-D-degrading 019 prokMSA_id:049432 AF176849 24-D-degrading 021 prokMSA_id:048740 AF176853 24-D-degrading 027 prokMSA_id:035633 AF176854 24-D-degrading 028 prokMSA_id:027157 AF176855 24-D-degrading 029 prokMSA_id:035171 AF176857 24-D-degrading 031 prokMSA_id:017963 AF226199 maize root Zmrc113 prokMSA_id:046155 AF226226 maize root Zmrc201 prokMSA_id:036387 AF226252 maize root Zmrc3 prokMSA_id:026845 AF247486 Burkholderia sp. SM7.5.min46GD prokMSA_id:022281 AF247487 Burkholderia sp. S4.13 prokMSA_id:029995 AF247780 Soil clone WD1 prokMSA_id:030095 AF247781 24-D degrading transconjugant WD2 prokMSA_id:074096 AF247782 24-D degrading transconjugant WD3 prokMSA_id:021525 AF287033 beta EC-I8 prokMSA_id:016375 AF392641 clone CDF8 prokMSA_id:028600 AF395073 clone 16S2 prokMSA_id:050872 AF395074 clone 16S3 prokMSA_id:068372 AF407343 Burkholderia sp. clone Bb09 prokMSA_id:068370 AF407344 Burkholderia sp. clone Ba11 prokMSA_id:068371 AF407345 Burkholderia sp. clone Re12 prokMSA_id:068369 AF407346 Burkholderia sp. clone Re04 prokMSA_id:068368 AF407347 Burkholderia sp. clone Bb08 prokMSA_id:068367 AF407348 Burkholderia sp. clone Bb01 prokMSA_id:068366 AF407349 Burkholderia sp. clone Ba06 prokMSA_id:068365 AF407350 Burkholderia sp. clone Rd12 prokMSA_id:068364 AF407351 Burkholderia sp. clone Bb12 prokMSA_id:068363 AF407352 Burkholderia sp. clone Bb05 prokMSA_id:068362 AF407353 Burkholderia sp. clone Bb04 prokMSA_id:068361 AF407354 Burkholderia sp. clone Rd08 prokMSA_id:068359 AF407355 Burkholderia sp. clone Ba04 prokMSA_id:068357 AF407356 Burkholderia sp. clone Rd09 prokMSA_id:076401 AF431213 beta clone N11.101WL prokMSA_id:076174 AF431216 beta clone N11.119WL prokMSA_id:077198 AF431217 beta clone N11.126WL prokMSA_id:074976 AF431219 beta clone N11.132WL prokMSA_id:075100 AF431227 beta clone N12.28WL prokMSA_id:076104 AF431228 beta clone N12.31WL prokMSA_id:076699 AF431229 beta clone C16.06WL prokMSA_id:075476 AF431230 beta clone C16.25WL prokMSA_id:076685 AF431233 beta clone C16.37WL prokMSA_id:076757 AF431234 beta clone C16.55WL prokMSA_id:077005 AF431236 beta clone C16.57WL prokMSA_id:076434 AF431238 beta clone C17.02WL prokMSA_id:076822 AF431240 beta clone C17.23WL prokMSA_id:074908 AF431244 beta clone S22.05WL prokMSA_id:077264 AF431246 beta clone S22.43WL prokMSA_id:076305 AF431247 beta clone S22.44WL prokMSA_id:076355 AF431248 beta clone S22.46WL prokMSA_id:075328 AF431250 beta clone N26.106SM prokMSA_id:076990 AF431254 beta clone N27.14SM prokMSA_id:075841 AF431257 beta clone N27.55SM prokMSA_id:076644 AF431264 beta clone C32.13SM prokMSA_id:075944 AF431273 beta clone C32.49SM prokMSA_id:075977 AF431275 beta clone C32.58SM prokMSA_id:076242 AF431276 beta clone S36.03SM prokMSA_id:074997 AF431279 beta clone S36.21SM prokMSA_id:075513 AF431281 beta clone S36.32SM prokMSA_id:076410 AF431282 beta clone S36.33SM prokMSA_id:075478 AF431286 beta clone S37.08SM prokMSA_id:075891 AF431289 beta clone S37.22SM prokMSA_id:077034 AF431291 beta clone S37.39SM prokMSA_id:075738 AF431295 beta clone N41.103PG prokMSA_id:074996 AF431296 beta clone N41.118PG prokMSA_id:077170 AF431297 beta clone N41.137PG prokMSA_id:074971 AF431299 beta clone N42.04PG prokMSA_id:076613 AF431302 beta clone N42.58PG prokMSA_id:076887 AF431303 beta clone N42.68PG prokMSA_id:075160 AF431304 beta clone N42.69PG prokMSA_id:076210 AF431307 beta clone C46.17PG prokMSA_id:077119 AF431308 beta clone C46.64PG prokMSA_id:077244 AF431310 beta clone C47.09PG prokMSA_id:075863 AF431316 beta clone S51.01PG prokMSA_id:075135 AF431319 beta clone S51.48PG prokMSA_id:074885 AF431325 beta clone S52.27PG prokMSA_id:075146 AF431327 beta clone S52.39PG prokMSA_id:075924 AF431328 beta clone S52.43PG prokMSA_id:061239 AF432661 clone NOS7.104WL prokMSA_id:021555 AF446320 FL14B04 prokMSA_id:072557 AF452131 Burkholderia glathei prokMSA_id:025797 AF469363 clone 33-PA27B98 prokMSA_id:055431 AF491935 Burkholderia sp. IRP 385 prokMSA_id:067468 AF491936 Burkholderia brasilensis strain M130 prokMSA_id:067465 AF491937 Burkholderia tropicalis strain PPe7 prokMSA_id:067466 AF491938 Burkholderia tropicalis strain PPe6 prokMSA_id:058093 AF498731 Ellin349 prokMSA_id:058091 AF498732 Ellin350 prokMSA_id:058079 AF498746 Ellin364 prokMSA_id:058078 AF498747 Ellin365 prokMSA_id:058077 AF498748 Ellin366 prokMSA_id:072182 AF498750 Ellin368 prokMSA_id:070517 AF498752 Ellin370 prokMSA_id:065776 AF507598 soil clone C162 prokMSA_id:065646 AF507748 soil clone S1102 prokMSA_id:023793 AJ233509 clone WR105 prokMSA_id:017053 AJ233510 clone WR108 prokMSA_id:035728 AJ233511 clone WR112 prokMSA_id:023837 AJ233513 clone WR114 prokMSA_id:034097 AJ233516 clone WR128 prokMSA_id:039380 AJ233517 clone WR134 prokMSA_id:052772 AJ233518 clone WR137 prokMSA_id:051115 AJ233520 clone WR144 prokMSA_id:026575 AJ233521 clone WR148 prokMSA_id:036194 AJ233526 clone WR170 prokMSA_id:032263 AJ233527 clone WR171 prokMSA_id:017034 AJ233528 clone WR174 prokMSA_id:030580 AJ233531 clone WR184 prokMSA_id:039562 AJ233532 clone WR188 prokMSA_id:052866 AJ233533 clone WR191 prokMSA_id:019726 AJ233534 clone WR193 prokMSA_id:040219 AJ233536 clone WR198 prokMSA_id:050512 AJ233539 clone WR1107 prokMSA_id:017360 AJ233541 clone WR1112 prokMSA_id:052878 AJ233546 clone WR1132 prokMSA_id:070631 AJ233547 clone WR1139 prokMSA_id:044704 AJ233549 clone WR1141 prokMSA_id:052943 AJ289945 1605-17 prokMSA_id:031216 AJ292652 WD222 clone WD222 prokMSA_id:071402 AJ292653 WD234 clone WD234 prokMSA_id:037334 AJ292664 WD204 clone WD204 prokMSA_id:037206 AJ292665 WD220 clone WD220 prokMSA_id:046999 AJ292860 WR810 clone WR810 prokMSA_id:038787 AJ292861 WR812 clone WR812 prokMSA_id:020066 AJ292862 WR816 clone WR816 prokMSA_id:048403 AJ292863 WR827 clone WR827 prokMSA_id:035036 AJ292864 WR834 clone WR834 prokMSA_id:041026 AJ292865 WR855 clone WR855 prokMSA_id:040430 AJ292866 WR884 clone WR884 prokMSA_id:020325 AJ292867 WR887 clone WR887 prokMSA_id:043473 AJ292868 WR897 clone WR897 prokMSA_id:019548 AJ292869 WR8108 clone WR8108 prokMSA_id:027994 AJ292870 WR8112 clone WR8112 prokMSA_id:042951 AJ292871 WR8120 clone WR8120 prokMSA_id:017170 AJ292872 WR8122 clone WR8122 prokMSA_id:049065 AJ292873 WR8127 clone WR8127 prokMSA_id:035060 AJ292874 WR8139 clone WR8139 prokMSA_id:022762 AJ292875 WR8149 clone WR8149 prokMSA_id:035237 AJ292876 WR8175 clone WR8175 prokMSA_id:034572 AJ292877 WR806 clone WR806 prokMSA_id:049066 AJ292878 WR819 clone WR819 prokMSA_id:038874 AJ292879 WR891 clone WR891 prokMSA_id:022596 AJ292880 WR8104 clone WR8104 prokMSA_id:017244 AJ292881 WR8114 clone WR8114 prokMSA_id:043554 AJ292882 WR8130 clone WR8130 prokMSA_id:049249 AJ302332 Burkholderia sp. EJP77 isolate EJP77 prokMSA_id:044171 AJ302336 Burkholderia sp. EJP67 isolate EJP67 prokMSA_id:059204 AJ344218 Burkholderia sp. EJP 95 isolate EJP 95 prokMSA_id:016890 AJ404491 Burkholderia BU1 prokMSA_id:045612 AJ409157 Beta dtb97 strain dtb97 prokMSA_id:070839 AJ518332 clone Neu2P1-75 prokMSA_id:056130 AJ518485 clone Qui2P1-6 prokMSA_id:057054 AJ518493 clone Qui2P1-90 prokMSA_id:087814 AJ561136 beta clone ANT-RB 927 prokMSA_id:087145 AJ561137 beta clone ANT-RB 929 prokMSA_id:089941 AJ574860 clone GR115-44 prokMSA_id:088121 AJ574866 clone GR115-12 prokMSA_id:089215 AJ574872 clone GR115-22 prokMSA_id:089314 AJ574877 clone GR115-11 prokMSA_id:089717 AJ574888 Burkholderia phenazinium strain 1S1 prokMSA_id:090572 AJ574889 Burkholderia terricola strain 1S5 prokMSA_id:088741 AJ574890 Burkholderia phenazinium strain 1S9 prokMSA_id:090677 AJ574891 Burkholderia phenazinium strain 1S15 prokMSA_id:088605 AJ574892 Burkholderia phenazinium strain 1S16 prokMSA_id:089512 AJ574893 Burkholderia phenazinium 6S strain S1 prokMSA_id:088233 AJ574931 Burkholderia sp. A1 strain A1 prokMSA_id:088299 AJ574932 Burkholderia fungorum strain 1A11 prokMSA_id:090084 AJ574933 Burkholderia phenazinium strain A12 prokMSA_id:089374 AJ574934 Burkholderia terricola strain A14 prokMSA_id:090779 AJ574935 Xanthomonas sp. A15 strain A15 prokMSA_id:089198 AJ574936 Burkholderia phenazinium strain 1A16 prokMSA_id:088280 AJ574937 Burkholderia terricola strain A17 prokMSA_id:088489 AJ574938 Burkholderia sp. A2 strain A2 prokMSA_id:088949 AJ575062 Burkholderia phenazinium strain S7 prokMSA_id:090086 AJ575063 Burkholderia phenazinium strain S9 prokMSA_id:089904 AJ575070 Burkholderia phenazinium strain S18 prokMSA_id:090377 AJ575072 Burkholderia phenazinium strain S20 prokMSA_id:089117 AJ575073 Burkholderia fungorum strain S28 prokMSA_id:089508 AJ575074 Burkholderia phenazinium strain S31 prokMSA_id:089058 AJ575075 Burkholderia terricola strain S5 prokMSA_id:089711 AJ575077 Burkholderia sp. S11 strain S11 prokMSA_id:088270 AJ575078 Burkholderia phenazinium strain S12 prokMSA_id:089339 AJ575079 Burkholderia phenazinium strain S13 prokMSA_id:088317 AJ575080 Burkholderia phenazinium strain S14 prokMSA_id:088531 AJ575081 Burkholderia phenazinium strain S15 prokMSA_id:089087 AJ575082 Burkholderia phenazinium strain S16 prokMSA_id:088786 AJ575083 Burkholderia phenazinium strain S17 prokMSA_id:088079 AJ575085 Burkholderia phenazinium strain A21 prokMSA_id:089458 AJ575088 Burkholderia sp. A24 strain A24 prokMSA_id:088696 AJ575089 Burkholderia terricola strain A25 prokMSA_id:089456 AJ575090 Burkholderia phenazinium strain A3 prokMSA_id:090003 AJ575092 Burkholderia phenazinium strain A6 prokMSA_id:089360 AJ576103 Burkholderia sp. clone 69 prokMSA_id:092553 AJ580647 clone NN325-19 prokMSA_id:092136 AJ580657 clone NN325-18 prokMSA_id:092095 AJ580672 clone NN325-53 prokMSA_id:074763 AY037601 soil clone S074 prokMSA_id:072564 AY040353 Burkholderia hospita prokMSA_id:073457 AY040366 Burkholderia hospita prokMSA_id:061643 AY043543 Burkholderia sp. 1S2.G7 prokMSA_id:061613 AY043580 Forest soil 4S2.H11 prokMSA_id:061561 AY043653 beta clone NOW2.107WL prokMSA_id:061558 AY043654 beta clone NOW2.121WL prokMSA_id:061557 AY043655 beta clone NOW2.126WL prokMSA_id:061556 AY043656 beta clone NOW2.129WL prokMSA_id:061555 AY043657 beta clone NOW2.132WL prokMSA_id:061553 AY043659 beta clone NOW2.39WL prokMSA_id:061552 AY043661 beta clone NOW2.45WL prokMSA_id:061547 AY043664 beta clone NOW2.65WL prokMSA_id:055966 AY043665 beta clone NOW2.67WL prokMSA_id:061546 AY043667 beta clone NOW2.76WL prokMSA_id:061543 AY043668 beta clone NOW2.93WL prokMSA_id:061545 AY043669 beta clone NOW2.94WL prokMSA_id:061544 AY043670 beta clone NOW2.99WL prokMSA_id:061540 AY043671 beta clone NOW2.DWL prokMSA_id:061539 AY043672 beta clone NOS7.124WL prokMSA_id:061536 AY043676 beta clone NOS7.159WL prokMSA_id:061534 AY043680 beta clone NOS7.55WL prokMSA_id:061448 AY043782 beta clone SMW4.120WL prokMSA_id:061445 AY043789 beta clone NMS8.139WL prokMSA_id:061442 AY043791 beta clone NMS8.20WL prokMSA_id:032701 AY048899 L11-23hw15 prokMSA_id:063549 AY117587 Burkholderia sp. DV24 prokMSA_id:063548 AY117588 Burkholderia sp. DV13 prokMSA_id:063547 AY117589 Burkholderia sp. DV25 prokMSA_id:063545 AY117590 Burkholderia sp. DV6 prokMSA_id:063546 AY117591 Burkholderia sp. DV4 prokMSA_id:063544 AY117592 Burkholderia sp. DV7 prokMSA_id:063543 AY117594 Burkholderia sp. DV57 prokMSA_id:063542 AY117595 Burkholderia sp. DV10 prokMSA_id:063541 AY117596 Burkholderia sp. DV11 prokMSA_id:063540 AY117598 Burkholderia sp. DV2 prokMSA_id:063539 AY117599 Burkholderia sp. DV3 prokMSA_id:060806 AY130004 Burkholderia sp. AZ163 prokMSA_id:060804 AY130005 Burkholderia sp. AZ102 prokMSA_id:069211 AY143706 Burkholderia sp. clone Lu50 prokMSA_id:069381 AY144239 gamma clone LTUG01214 prokMSA_id:078713 AY178856 Burkholderia sp. C50 prokMSA_id:080762 AY192307 beta clone P2-8C prokMSA_id:080345 AY192308 beta clone P2-8D prokMSA_id:082452 AY196146 Burkholderia sp. WK7 prokMSA_id:083561 AY214666 beta clone SL2-1-A2 prokMSA_id:086601 AY214671 beta clone SL2-2-C5R prokMSA_id:085561 AY214672 beta clone SL2-2-F2R prokMSA_id:086356 AY214677 beta clone SL2-2-E7R prokMSA_id:086376 AY214750 beta clone BB-1-F7 prokMSA_id:084609 AY217461 beta clone WCB184 prokMSA_id:086337 AY261683 Burkholderia sp. 4s prokMSA_id:083143 AY267468 Burkholderia sp. 3CBS2 prokMSA_id:082721 AY267469 Burkholderia sp. 3CBZ prokMSA_id:085132 AY267470 Burkholderia sp. 3CBX prokMSA_id:085430 AY267471 Burkholderia sp. 3CBM prokMSA_id:084055 AY267472 Burkholderia sp. 3CBAE prokMSA_id:084924 AY267473 Burkholderia sp. 3CBP prokMSA_id:085796 AY267474 Burkholderia sp. 3CBG prokMSA_id:086353 AY267475 Burkholderia sp. 3CBAC prokMSA_id:085601 AY267476 Burkholderia sp. 3CBZ2 prokMSA_id:085464 AY267477 Burkholderia sp. 3CBC prokMSA_id:084956 AY267478 Burkholderia sp. 3CBJ prokMSA_id:085015 AY267479 Burkholderia sp. 3CBR prokMSA_id:084262 AY267480 Burkholderia sp. 3CB3F prokMSA_id:082604 AY267481 Burkholderia sp. 3CB3N2 prokMSA_id:083252 AY267482 Burkholderia sp. 3CB3N3 prokMSA_id:084576 AY267483 Burkholderia sp. 3CB3N1 prokMSA_id:084676 AY267484 Burkholderia sp. 3CB3I3 prokMSA_id:084354 AY267485 Burkholderia sp. 3CB3M prokMSA_id:085175 AY267486 Burkholderia sp. 3CB3I prokMSA_id:082979 AY267487 Burkholderia sp. 3CB3B prokMSA_id:082888 AY267488 Burkholderia sp. 3CB3I2 prokMSA_id:086164 AY267489 Burkholderia sp. 3CB3H prokMSA_id:086542 AY267490 Burkholderia sp. 2CBA prokMSA_id:083003 AY267491 Burkholderia sp. 3CBN3 prokMSA_id:085061 AY267492 Burkholderia sp. 3CBI prokMSA_id:086430 AY267493 Burkholderia sp. 3CBAD prokMSA_id:086300 AY267494 Burkholderia sp. 3CB3A prokMSA_id:084356 AY267532 Burkholderia sp. 3CBM2 prokMSA_id:088340 AY289434 soil clone DS-138 prokMSA_id:088213 AY289435 soil clone ABS-80 prokMSA_id:090220 AY289436 soil clone ABS-113 prokMSA_id:088171 AY289437 soil clone ABS-458 prokMSA_id:090719 AY289438 soil clone DS-299 prokMSA_id:090729 AY289446 soil clone ABS-11 prokMSA_id:086758 AY293539 clone FL14B10 prokMSA_id:090011 AY307365 Burkholderia sp. M12 prokMSA_id:090228 AY307366 Burkholderia sp. M14 prokMSA_id:093652 AY357974 beta cEV33 prokMSA_id:094134 AY357995 beta cEV60 prokMSA_id:093632 AY364049 beta clone cRI40c prokMSA_id:093715 AY369238 Burkholderia sp. iRIII19 prokMSA_id:097141 AY376447 beta clone Eub11 prokMSA_id:095647 AY376448 beta clone Eub6 prokMSA_id:098011 AY376449 beta clone Eub8 prokMSA_id:098435 AY391701 soil clone M85 prokMSA_id:096009 AY394626 Burkholderia sp. clone W1-4 prokMSA_id:097065 AY395116 clone C02R prokMSA_id:007205 D28795 str. MA674. prokMSA_id:007206 D28797 str. MF657. prokMSA_id:007217 U45700 clone CL03. prokMSA_id:040025 U81699 clone vadinDC43 prokMSA_id:007204 X86621 unnamed organism. prokMSA_id:071747 Y12370 1511 bp prokMSA_id:070873 Y12374 759 bp 2.28.2.10.5 BUR.THAILANDENSIS_SUBGROUP 118 seqs 2.28.2.10.5.001 OTU 97 seqs prokMSA_id:048735 AF093047 Burkholderia pseudomallei isolate H1 prokMSA_id:024062 AF093048 Burkholderia pseudomallei Ara+ biotype isolate S94019 prokMSA_id:021478 AF093053 Burkholderia pseudomallei isolate H2 prokMSA_id:017136 AF093054 Burkholderia pseudomallei isolate L2 prokMSA_id:016318 AF093055 Burkholderia pseudomallei isolate K96243 prokMSA_id:046605 AF093056 Burkholderia pseudomallei isolate V684 prokMSA_id:036691 AF093057 Burkholderia pseudomallei isolate V685 prokMSA_id:039013 AF093058 Burkholderia pseudomallei isolate V688 prokMSA_id:037270 AF093059 Burkholderia pseudomallei isolate V824 prokMSA_id:052375 AF093060 Burkholderia pseudomallei isolate V830 prokMSA_id:007240 AF110187 Burkholderia mallei str. GB6. prokMSA_id:007241 AF110188 Burkholderia mallei str. GB8. prokMSA_id:007238 AJ131790 Burkholderia pseudomallei. prokMSA_id:082150 AY198339 Burkholderia pseudomallei prokMSA_id:088290 AY268182 Burkholderia thailandensis strain 2002721627 prokMSA_id:088936 AY268183 Burkholderia thailandensis strain 2002721643 prokMSA_id:091826 AY305738 Burkholderia mallei strain 2002734307 complete prokMSA_id:091283 AY305739 Burkholderia mallei strain 2002734306 complete prokMSA_id:091650 AY305740 Burkholderia mallei strain 2002734305 complete prokMSA_id:091464 AY305741 Burkholderia mallei strain 2002734304 complete prokMSA_id:091555 AY305742 Burkholderia mallei strain 2002734303 complete prokMSA_id:091988 AY305743 Burkholderia mallei strain 2002734302 complete prokMSA_id:091664 AY305744 Burkholderia mallei strain 2002734301 complete prokMSA_id:091300 AY305745 Burkholderia mallei strain 2002734300 complete prokMSA_id:091885 AY305746 Burkholderia mallei strain 2002734299 complete prokMSA_id:091278 AY305747 Burkholderia mallei strain 2002721648 complete prokMSA_id:091166 AY305748 Burkholderia mallei strain 2000031304 complete prokMSA_id:091970 AY305749 Burkholderia mallei strain 2000031066 complete prokMSA_id:091925 AY305750 Burkholderia mallei strain 2000031065 complete prokMSA_id:091771 AY305751 Burkholderia mallei strain 2000031064 complete prokMSA_id:091193 AY305752 Burkholderia mallei strain 2002721280 complete prokMSA_id:091465 AY305753 Burkholderia mallei strain 2002721279 complete prokMSA_id:091006 AY305754 Burkholderia mallei strain 2002721278 complete prokMSA_id:091261 AY305755 Burkholderia mallei strain 2002721277 complete prokMSA_id:091857 AY305756 Burkholderia mallei strain 2002721276 complete prokMSA_id:091752 AY305757 Burkholderia mallei strain 2002721275 complete prokMSA_id:091472 AY305758 Burkholderia mallei strain 2002721273 complete prokMSA_id:091568 AY305759 Burkholderia mallei strain 2002721274 complete prokMSA_id:091282 AY305760 Burkholderia mallei strain 2000031063 complete prokMSA_id:091737 AY305763 Burkholderia pseudomallei strain 2000032027 complete prokMSA_id:091833 AY305764 Burkholderia pseudomallei strain K96243 complete prokMSA_id:091996 AY305765 Burkholderia pseudomallei strain 2002721171 complete prokMSA_id:091920 AY305766 Burkholderia pseudomallei strain 2002721166 complete prokMSA_id:091038 AY305767 Burkholderia pseudomallei strain 2002721108 complete prokMSA_id:091227 AY305768 Burkholderia pseudomallei strain 2002721103 complete prokMSA_id:091086 AY305769 Burkholderia pseudomallei strain 2002721102 complete prokMSA_id:091527 AY305770 Burkholderia pseudomallei strain 2002721096 complete prokMSA_id:091563 AY305771 Burkholderia pseudomallei strain 2002721090 complete prokMSA_id:091723 AY305772 Burkholderia pseudomallei strain 2002721647 complete prokMSA_id:091383 AY305773 Burkholderia pseudomallei strain 2001029240 complete prokMSA_id:091302 AY305774 Burkholderia pseudomallei strain 2002721209 complete prokMSA_id:091891 AY305775 Burkholderia pseudomallei strain 2002721186 complete prokMSA_id:091825 AY305776 Burkholderia pseudomallei strain 2002721184 complete prokMSA_id:091346 AY305777 Burkholderia pseudomallei strain 2002721181 complete prokMSA_id:091773 AY305778 Burkholderia pseudomallei strain 2002721177 complete prokMSA_id:091273 AY305779 Burkholderia pseudomallei strain 2002721162 complete prokMSA_id:091441 AY305780 Burkholderia pseudomallei strain 2002721161 complete prokMSA_id:091485 AY305781 Burkholderia pseudomallei strain 2002721146 complete prokMSA_id:091046 AY305782 Burkholderia pseudomallei strain 2002721145 complete prokMSA_id:091586 AY305783 Burkholderia pseudomallei strain 2002721124 complete prokMSA_id:091867 AY305784 Burkholderia pseudomallei strain 2002721123 complete prokMSA_id:091403 AY305785 Burkholderia pseudomallei strain 2002721116 complete prokMSA_id:091110 AY305786 Burkholderia pseudomallei strain 2002721115 complete prokMSA_id:091689 AY305787 Burkholderia pseudomallei strain 2002721114 complete prokMSA_id:091682 AY305788 Burkholderia pseudomallei strain 2002721646 complete prokMSA_id:091902 AY305789 Burkholderia pseudomallei strain 2002721642 complete prokMSA_id:091496 AY305790 Burkholderia pseudomallei strain 2002721641 complete prokMSA_id:091269 AY305791 Burkholderia pseudomallei strain 2003000540 complete prokMSA_id:091805 AY305792 Burkholderia pseudomallei strain 2002721640 complete prokMSA_id:091091 AY305793 Burkholderia pseudomallei strain 2002721639 complete prokMSA_id:091377 AY305794 Burkholderia pseudomallei strain 2002721638 complete prokMSA_id:091500 AY305795 Burkholderia pseudomallei strain 2002721637 complete prokMSA_id:091599 AY305796 Burkholderia pseudomallei strain 2002721636 complete prokMSA_id:091861 AY305797 Burkholderia pseudomallei strain 2002721635 complete prokMSA_id:091808 AY305798 Burkholderia pseudomallei strain 2002721634 complete prokMSA_id:091864 AY305799 Burkholderia pseudomallei strain 2002721633 complete prokMSA_id:092011 AY305800 Burkholderia pseudomallei strain 2002721632 complete prokMSA_id:091928 AY305801 Burkholderia pseudomallei strain 2002721631 complete prokMSA_id:091360 AY305802 Burkholderia pseudomallei strain 2002721630 complete prokMSA_id:091469 AY305803 Burkholderia pseudomallei strain 2002721629 complete prokMSA_id:091437 AY305804 Burkholderia pseudomallei strain 2002721628 complete prokMSA_id:091069 AY305805 Burkholderia pseudomallei strain 2002721626 complete prokMSA_id:091250 AY305806 Burkholderia pseudomallei strain 2002721625 complete prokMSA_id:091232 AY305807 Burkholderia pseudomallei strain 2002721624 complete prokMSA_id:091277 AY305808 Burkholderia pseudomallei strain 2002721623 complete prokMSA_id:091463 AY305809 Burkholderia pseudomallei strain 2002721622 complete prokMSA_id:091617 AY305810 Burkholderia pseudomallei strain 2002721620 complete prokMSA_id:091062 AY305811 Burkholderia pseudomallei strain 2002721619 complete prokMSA_id:091294 AY305812 Burkholderia pseudomallei strain 2002721618 complete prokMSA_id:091819 AY305813 Burkholderia pseudomallei strain 2002721617 complete prokMSA_id:091539 AY305814 Burkholderia pseudomallei strain 2000032028 complete prokMSA_id:091848 AY305815 Burkholderia pseudomallei strain 2000032026 complete prokMSA_id:091810 AY305816 Burkholderia pseudomallei strain 2000032025 complete prokMSA_id:091508 AY305817 Burkholderia pseudomallei strain 2000032024 complete prokMSA_id:091734 AY305818 Burkholderia pseudomallei strain 2000032029 complete prokMSA_id:007237 U91838 Burkholderia thailandensis str. E264 ATCC 700388 . prokMSA_id:007239 U91839 Burkholderia pseudomallei str. 1026b. 2.28.2.10.5.002 OTU 3 seqs prokMSA_id:032997 AH004174 Burkholderia mallei ATCC 23344 Genomic 1340 nt 2 segments prokMSA_id:007233 NONE Burkholderia pseudomallei ATCC 23343. prokMSA_id:007236 S55000 Burkholderia mallei str. China 7 ATCC 23344. 2.28.2.10.5.003 OTU 1 seq prokMSA_id:027890 AB011287 Burkholderia sp. 2.28.2.10.5.004 OTU 5 seqs prokMSA_id:038919 AJ251633 Gigaspora margarita WV205A-5 endosymbiont prokMSA_id:030439 AJ251634 Scutellospora persica E28 endosymbiont prokMSA_id:050390 AJ251635 Scutellospora persica E09 endosymbiont prokMSA_id:028964 AJ251636 Scutellospora castanea BEG1 endosymbiont prokMSA_id:044752 X89727 Candidatus Glomeribacter gigasporarum 2.28.2.10.5.005 OTU 4 seqs prokMSA_id:076693 AF475064 Candidatus Burkholderia kirkii strain 19981825 complete prokMSA_id:076440 AF475066 Candidatus Burkholderia kirkii strain 835429 complete prokMSA_id:076358 AF475067 Candidatus Burkholderia kirkii strain 835430 complete prokMSA_id:075885 AF475068 Candidatus Burkholderia kirkii strain 835462 complete 2.28.2.10.5.999 poor quality 8 seqs prokMSA_id:032282 AF231444 Humic substances enrichment clone E1 prokMSA_id:063551 AY117585 Burkholderia sp. DV52 prokMSA_id:063550 AY117586 Burkholderia sp. DV64 prokMSA_id:023000 S55008 Burkholderia mallei ATCC 23344 Genomic 378 nt segment 2 of 2 prokMSA_id:007231 U29876 Burkholderia pseudomallei. prokMSA_id:007234 U29877 Burkholderia pseudomallei. prokMSA_id:007235 U29878 Burkholderia pseudomallei. prokMSA_id:007232 U29879 Burkholderia pseudomallei. 2.28.2.10.6 BUR.CEPACIA_SUBGROUP 190 seqs 2.28.2.10.6.001 OTU 1 seq prokMSA_id:007280 U16140 Burkholderia sp. 2.28.2.10.6.005 OTU 1 seq prokMSA_id:007260 U67162 Thiomonas cuprina str. Hö5 DSM 5495 . 2.28.2.10.6.006 OTU 2 seqs prokMSA_id:032920 AH004175 Burkholderia gladioli Genomic 1343 nt 2 segments prokMSA_id:007244 S55001 Burkholderia gladioli EY 3258. 2.28.2.10.6.008 OTU 113 seqs prokMSA_id:007258 AB008002 Burkholderia sp. str. MBIC3837. prokMSA_id:034465 AB012916 Burkholderia gladioli complete prokMSA_id:053682 AB013111 Burkholderia gladioli prokMSA_id:007255 AB015606 Burkholderia cepacia str. KP24. prokMSA_id:017335 AB021389 Burkholderia cocovenenans strain ATCC 33664T prokMSA_id:007270 AB023646 Burkholderia gladioli. prokMSA_id:007271 AB023647 Burkholderia gladioli. prokMSA_id:007269 AB024491 Burkholderia gladioli subsp. gladioli str. NIAS 1065. prokMSA_id:031991 AB030584 Burkholderia uboniae prokMSA_id:027685 AB041730 Burkholderia sp. CAB-02 prokMSA_id:040802 AB051408 Burkholderia cepacia prokMSA_id:059707 AB091761 Burkholderia cepacia complete prokMSA_id:084996 AB092606 Burkholderia multivorans prokMSA_id:087062 AB110089 Burkholderia cepacia prokMSA_id:007277 AF042161 Burkholderia cepacia str. PVFi5A. prokMSA_id:007249 AF043302 Burkholderia vietnamiensis str. AMMD. prokMSA_id:007250 AF097530 Burkholderia cepacia str. Ballard 717; Starr PC 25 ATCC 25416 . prokMSA_id:007251 AF097531 Burkholderia multivorans LMG 14293. prokMSA_id:007252 AF097532 Burkholderia cepacia LMG 12614t2. prokMSA_id:007253 AF097533 Burkholderia cepacia LMG 14294. prokMSA_id:007254 AF097534 Burkholderia vietnamiensis str. TVV75 LMG 10929 . prokMSA_id:046687 AF143837 clone AF1.2 prokMSA_id:071097 AF148554 Burkholderia stabilis prokMSA_id:072468 AF148555 Burkholderia multivorans prokMSA_id:074106 AF148556 Burkholderia cepacia genomovar III prokMSA_id:021734 AF153194 Ralstonia sp. RJGII.123 prokMSA_id:048688 AF175314 Burkholderia cepacia prokMSA_id:035609 AF219125 Burkholderia sp. AB2 prokMSA_id:046233 AF219126 Burkholderia sp. AB101 prokMSA_id:027908 AF226727 Burkholderia sp. casida prokMSA_id:019296 AF265235 Burkholderia cepacia genomovar III prokMSA_id:041619 AF311969 Burkholderia cepacia isolate LMG 12615 prokMSA_id:034839 AF311970 Burkholderia cepacia isolate LMG 12614 prokMSA_id:021561 AF311971 Burkholderia cepacia isolate LS2.4 prokMSA_id:045950 AF311972 Burkholderia cepacia isolate WS11.7 prokMSA_id:032496 AF335494 Burkholderia cepacia prokMSA_id:030763 AF429992 Burkholderia cepacia strain BRZ-35 prokMSA_id:056269 AF467343 beta clone 1581 prokMSA_id:056209 AF494540 Burkholderia sp. BPC2 prokMSA_id:049014 AJ300684 Burkholderia sp. NCPPB3025 strain NCPPB 3025 prokMSA_id:032065 AJ300685 Burkholderia sp. SH1 strain SH1a prokMSA_id:054199 AJ300695 Burkholderia sp. RR8 strain RR8 prokMSA_id:027839 AJ300697 Burkholderia sp. ON1 strain ON1 prokMSA_id:074560 AJ387865 oxSCC-12 prokMSA_id:052847 AJ420880 Burkholderia anthina strain R-4183 prokMSA_id:078347 AJ440713 Burkholderia pyrrocinia strain R11805 prokMSA_id:078142 AJ440714 Burkholderia pyrrocinia strain R13058 prokMSA_id:077747 AJ440715 Burkholderia pyrrocinia strain R1904 prokMSA_id:090782 AJ491304 Burkholderia sp. CEB01056 strain CEB01056 prokMSA_id:080730 AJ544072 Burkholderia anthina strain BHS1 prokMSA_id:094022 AJ551104 Burkholderia sp. wp26 isolate wp26 prokMSA_id:082944 AJ555477 Burkholderia sp. MN 101.b strain MN 101.b prokMSA_id:019447 AY028444 Burkholderia ambifaria prokMSA_id:021799 AY069932 Burkholderia cepacia strain BV19 prokMSA_id:070255 AY094500 beta clone 8-49 prokMSA_id:065553 AY095408 yard-trimming-compost clone S-39 prokMSA_id:075187 AY161047 Burkholderia cepacia prokMSA_id:075102 AY161049 Burkholderia sp. CC-TF5 prokMSA_id:078113 AY172277 clone 328 prokMSA_id:078315 AY172296 clone 322 prokMSA_id:081718 AY207313 Burkholderia cepacia strain B9 prokMSA_id:091413 AY268140 Burkholderia cepacia strain 1997019658 prokMSA_id:091654 AY268141 Burkholderia cepacia strain 1996034502 prokMSA_id:091013 AY268142 Burkholderia cepacia strain 1998019618 prokMSA_id:091794 AY268143 Burkholderia cepacia strain 1997024024 prokMSA_id:091019 AY268144 Burkholderia cepacia strain 1996031073 prokMSA_id:091750 AY268145 Burkholderia cepacia strain 1996031072 prokMSA_id:091511 AY268146 Burkholderia cepacia strain 1995030549 prokMSA_id:091324 AY268147 Burkholderia cepacia strain 1996031071 prokMSA_id:091633 AY268148 Burkholderia cepacia strain 1995035407 prokMSA_id:091105 AY268149 Burkholderia cepacia strain 1995019362 prokMSA_id:091267 AY268150 Burkholderia cepacia strain 1997030236 prokMSA_id:091849 AY268151 Burkholderia cepacia strain 2002721599 prokMSA_id:091313 AY268152 Burkholderia cepacia strain 2001008925 prokMSA_id:091156 AY268153 Burkholderia cepacia strain 1998003407 prokMSA_id:091063 AY268154 Burkholderia cepacia strain 1996033838 prokMSA_id:091714 AY268155 Burkholderia cepacia strain 1998000769 prokMSA_id:091320 AY268156 Burkholderia cepacia strain 1998003405 prokMSA_id:091828 AY268157 Burkholderia cepacia strain 1997033973 prokMSA_id:091455 AY268158 Burkholderia cepacia strain 1998019620 prokMSA_id:091385 AY268159 Burkholderia cepacia strain 2001038720 prokMSA_id:091987 AY268160 Burkholderia cepacia strain 1998040347 prokMSA_id:091096 AY268161 Burkholderia cepacia strain 2001038723 prokMSA_id:091341 AY268162 Burkholderia cepacia strain 1998040346 prokMSA_id:091595 AY268163 Burkholderia gladioli strain 2002721590 prokMSA_id:091991 AY268164 Burkholderia gladioli strain 2002721589 prokMSA_id:091916 AY268165 Burkholderia gladioli strain 1995009253 prokMSA_id:091924 AY268166 Burkholderia gladioli strain 1996012911 prokMSA_id:091039 AY268167 Burkholderia gladioli strain 1993027208 prokMSA_id:090244 AY297695 Burkholderia gladioli prokMSA_id:090667 AY315441 Burkholderia cepacia strain CC-R16 prokMSA_id:089175 AY315442 Burkholderia cepacia strain CC-MP1 prokMSA_id:089744 AY321587 Burkholderia pyrrocinia HI2715 prokMSA_id:092019 AY337584 Burkholderia cepacia CC-88192 prokMSA_id:092151 AY353696 Burkholderia sp. 45250588-5 prokMSA_id:092909 AY360346 Burkholderia cepacia prokMSA_id:062903 E10021 Pseudomonas prokMSA_id:007242 L28675 Burkholderia cepacia str. G4. prokMSA_id:007243 NONE Burkholderia cepacia str. Ballard 717; Starr PC 25 ATCC 25416 . prokMSA_id:007247 U37340 Burkholderia sp. prokMSA_id:007279 U96927 Burkholderia cepacia str. Ballard 717; Starr PC 25 ATCC 25416 . prokMSA_id:007261 U96928 Burkholderia vietnamiensis str. TVV75. prokMSA_id:007266 U96929 Burkholderia vietnamiensis str. TVV70. prokMSA_id:007273 U96930 Burkholderia pyrrocinia str. 2327 LMG 14191 . prokMSA_id:007264 U96931 Burkholderia glumae LMG 2196 . prokMSA_id:007246 U96932 Burkholderia plantarii LMG 16020 . prokMSA_id:007272 U96933 Burkholderia plantarii str. AZ 8201 LMG 9035 . prokMSA_id:007265 U96934 Burkholderia gladioli LMG 11626 . prokMSA_id:007275 U96937 Burkholderia m35b str. m35b. prokMSA_id:007276 U96938 Burkholderia C3B1M str. C3B1M. prokMSA_id:007267 X67038 Burkholderia gladioli ATCC 10248 . prokMSA_id:007256 X87275 Burkholderia cepacia. prokMSA_id:007248 Y18703 Burkholderia multivorans LMG 13010. 2.28.2.10.6.009 OTU 1 seq prokMSA_id:059538 AF538753 Enrichment culture clone 0.1LB-F 2.28.2.10.6.010 OTU 1 seq prokMSA_id:056109 AF467301 Xanthomonas sp. clone 88_5_1 2.28.2.10.6.011 OTU 1 seq prokMSA_id:033919 AB079372 Burkholderia sp. S-2 2.28.2.10.6.012 OTU 1 seq prokMSA_id:041507 AY049942 Beta A35-1 2.28.2.10.6.013 OTU 2 seqs prokMSA_id:044874 AF356009 clone BA1 prokMSA_id:042259 AF356013 clone CY8 2.28.2.10.6.014 OTU 1 seq prokMSA_id:050273 AF150698 Elbe River snow isolate Iso18 2.28.2.10.6.015 OTU 1 seq prokMSA_id:074696 AF005994 Pseudomonas sp. 679-2 2.28.2.10.6.016 OTU 1 seq prokMSA_id:089997 AJ565422 Beta MWH-UniP4 isolate MWH-UniP4 2.28.2.10.6.999 poor quality 64 seqs prokMSA_id:038210 AB011733 beta strain: G22035 prokMSA_id:033241 AB011739 beta strain: G21019 prokMSA_id:027942 AB011740 beta strain: G21020 prokMSA_id:074616 AB011741 beta strain: G21023 prokMSA_id:047747 AB011742 beta strain: G21027 prokMSA_id:032749 AB011743 beta strain: G22034 prokMSA_id:026011 AB013404 Burkholderia sp. KS1 prokMSA_id:039348 AB013439 Burkholderia sp. YS1 prokMSA_id:007274 AB021369 Burkholderia pyrrocinia str. 2327 ATCC 15958 . prokMSA_id:007268 AB021384 Pseudomonas antimicrobica NCIMB 9898. prokMSA_id:045003 AB079471 clone:TOYO-10-Am prokMSA_id:082563 AB107188 Beta W-2024 parital prokMSA_id:085767 AB107191 Beta W-2028 parital prokMSA_id:084358 AB107194 Beta W-2047a parital prokMSA_id:051508 AF107072 Burkholderia cepacia prokMSA_id:026527 AF175599 WJGRT-35 prokMSA_id:039258 AF210714 clone SUA1 prokMSA_id:019820 AF226179 Maize root ZmrIs1WY prokMSA_id:050707 AF226185 Maize root ZmrIs17 prokMSA_id:044029 AF226250 maize root Zmrc265 prokMSA_id:042384 AF232906 Burkholderia sp. prokMSA_id:020202 AF247479 Phenanthrene-metabolizing DGGE-band-4 prokMSA_id:039600 AF247488 Burkholderia sp. C2.1 prokMSA_id:041090 AF250411 Burkholderia sp. D25 prokMSA_id:073758 AF323551 Bay of Fundy BA10-1A prokMSA_id:070536 AF346896 Burkholderia vietnamiensis isolate CCUG35582 prokMSA_id:073181 AF346897 Burkholderia cepacia isolate CCUG28959 prokMSA_id:073525 AF346898 Burkholderia cepacia genomovar III isolate CCUG34411 prokMSA_id:072290 AF346899 Burkholderia cepacia isolate CCUG788 prokMSA_id:026015 AF346900 Burkholderia cepacia isolate CCUG787 prokMSA_id:073395 AF346901 Burkholderia cepacia isolate CCUG3000 prokMSA_id:068358 AF407357 Burkholderia sp. clone Bb03 prokMSA_id:074062 AF440780 Burkholderia cepacia prokMSA_id:077442 AF477795 beta clone AGCO25 prokMSA_id:064256 AF495867 Burkholderia cepacia strain LMG 1222 prokMSA_id:084173 AF499842 clone LCLC40 prokMSA_id:098268 AJ555144 Burkholderia multivorans prokMSA_id:095830 AJ555146 Burkholderia cepacia prokMSA_id:086880 AJ561126 beta clone ANT-RB 49 prokMSA_id:092250 AJ580640 clone NN325-69 prokMSA_id:061551 AY043660 beta clone NOW2.40WL prokMSA_id:059199 AY149233 Burkholderia cepacia strain CC-A174 prokMSA_id:078380 AY172309 clone 122 prokMSA_id:079125 AY180077 symbiont of Aplysina cavernicola isolate DGGE gel band 2 prokMSA_id:079585 AY180078 symbiont of Aplysina cavernicola isolate DGGE gel band 3 prokMSA_id:079529 AY180084 symbiont of Aplysina cavernicola isolate DGGE gel band 9 prokMSA_id:079442 AY180085 symbiont of Aplysina cavernicola isolate DGGE gel band 10 prokMSA_id:079462 AY180086 symbiont of Aplysina cavernicola isolate DGGE gel band 11 prokMSA_id:080807 AY192321 beta clone S3-1G prokMSA_id:082349 AY197330 Burkholderia singaporensis strain Gs prokMSA_id:081093 AY197331 Burkholderia pyrrocinia strain As prokMSA_id:085677 AY224513 Burkholderia sp. prokMSA_id:093474 AY297787 Burkholderia cepacia prokMSA_id:088518 AY309501 Burkholderia cepacia prokMSA_id:090090 AY314742 Burkholderia sp. 2b prokMSA_id:096470 AY382604 Burkholderia cepacia sample 68 prokMSA_id:097425 AY395177 clone H02K prokMSA_id:007259 M22518 Burkholderia cepacia str. Ballard 717; Starr PC 25 ATCC 25416 . prokMSA_id:047500 S55010 Burkholderia gladioli Genomic 378 nt segment 2 of 2 prokMSA_id:007278 X80284 Burkholderia cepacia. prokMSA_id:007262 X80286 Burkholderia cepacia. prokMSA_id:007263 X80287 Burkholderia cepacia. prokMSA_id:007245 X87334 Burkholderia gladioli NCIMB 12451. prokMSA_id:007257 Y11636 clone 69. 2.28.2.11 OXALOBACTER_GROUP 584 seqs 2.28.2.11.001 OTU 7 seqs prokMSA_id:007366 U49750 Oxalobacter formigenes str. BLISS. prokMSA_id:007367 U49751 Oxalobacter formigenes str. SOX-4. prokMSA_id:070632 U49752 Oxalobacter formigenes prokMSA_id:007368 U49753 Oxalobacter formigenes str. OXGP. prokMSA_id:007370 U49755 Oxalobacter formigenes str. OXC. prokMSA_id:007364 U49757 Oxalobacter formigenes str. OxB ATCC 35274 . prokMSA_id:007372 U49758 Oxalobacter formigenes str. HC1. 2.28.2.11.004 OTU 3 seqs prokMSA_id:050320 AF371862 clone p-2518-18B5 prokMSA_id:007369 U49754 Oxalobacter formigenes str. OXCR. prokMSA_id:007371 U49756 Oxalobacter formigenes str. OXK. 2.28.2.11.005 OTU 1 seq prokMSA_id:007365 U49749 Oxalobacter formigenes str. BA4. 2.28.2.11.010 OTU 1 seq prokMSA_id:007347 X65590 Telluria chitinolytica str. 20M ACM 3522 . 2.28.2.11.011 OTU 3 seqs prokMSA_id:007344 AB021375 ATCC 17989. prokMSA_id:007346 X92554 LMG 16480. prokMSA_id:007343 X92555 Pseudomonas lemoignei. 2.28.2.11.012 OTU 2 seqs prokMSA_id:032294 AB006750 beta prokMSA_id:007345 Y11585 str. Mena 23/3-3c DSM 6920. 2.28.2.11.013 OTU 1 seq prokMSA_id:007335 D14256 Duganella zoogloeoides IAM 12670 . 2.28.2.11.016 OTU 1 seq prokMSA_id:007326 Z97857 clone env_25. 2.28.2.11.017 OTU 1 seq prokMSA_id:007324 AF159664 clone HstpL82. 2.28.2.11.018 OTU 5 seqs prokMSA_id:007317 Z97852 clone env_2. prokMSA_id:007318 Z97853 clone env_5. prokMSA_id:007321 Z97854 clone env_11. prokMSA_id:007319 Z97855 clone env_17. prokMSA_id:007320 Z97856 clone env_18. 2.28.2.11.019 OTU 1 seq prokMSA_id:007316 X65589 Telluria mixta ACM 1762 . 2.28.2.11.020 OTU 34 seqs prokMSA_id:007292 AB021366 Pseudomonas huttiensis ATCC 14670. prokMSA_id:007295 AB021424 Herbaspirillum rubrisubalbicans ATCC 19308. prokMSA_id:043640 AB049103 Herbaspirillum sp. B65 prokMSA_id:022575 AB049104 Herbaspirillum sp. B512 prokMSA_id:016576 AB049133 Herbaspirillum sp. B501 prokMSA_id:069647 AB094401 Herbaspirillum chlorophenolicum prokMSA_id:089223 AB112464 beta clone:SUP24-24 prokMSA_id:033537 AF058386 Herbaspirillum clone MT22 prokMSA_id:007296 AF137508 Herbaspirillum rubrisubalbicans ICMP 5777. prokMSA_id:007306 AF164049 Herbaspirillum sp. BA10 prokMSA_id:007307 AF164050 Herbaspirillum sp. BA11 prokMSA_id:007308 AF164051 Herbaspirillum sp. BA12 prokMSA_id:007309 AF164052 Herbaspirillum sp. BA14 prokMSA_id:007310 AF164053 Herbaspirillum sp. BA15 prokMSA_id:007311 AF164054 Herbaspirillum sp. BA16 prokMSA_id:007313 AF164062 Herbaspirillum seropedicae strain BA153 prokMSA_id:007314 AF164063 Herbaspirillum sp. BA161 prokMSA_id:030348 AF164065 Herbaspirillum seropedicae strain X8 prokMSA_id:029908 AF214642 Nitrogen-fixing COL prokMSA_id:042481 AF364861 Herbaspirillum sp. BA17 prokMSA_id:007299 AJ238356 Herbaspirillum rubrisubalbicans str. M4. prokMSA_id:007300 AJ238357 Herbaspirillum frisingense str. 75B. prokMSA_id:007301 AJ238358 Herbaspirillum frisingense str. GSF30. prokMSA_id:007302 AJ238359 Herbaspirillum frisingense str. Mb11. prokMSA_id:007304 AJ238361 Herbaspirillum seropedicae str. Z67. prokMSA_id:063615 AY043371 Pseudomonas huttiensis prokMSA_id:063611 AY043372 Herbaspirillum frisingense prokMSA_id:047876 AY049039 Pseudomonas huttiensis prokMSA_id:080182 AY191273 Herbaspirillum seropedicae strain Z152 prokMSA_id:080833 AY191274 Herbaspirillum seropedicae strain ZA95 prokMSA_id:080494 AY191275 Herbaspirillum seropedicae strain Z78 prokMSA_id:080103 AY191276 Herbaspirillum seropedicae strain M2 prokMSA_id:007284 U62830 clone RB06. prokMSA_id:007283 Y10146 Herbaspirillum seropedicae str. Z67 DSM 6445 . 2.28.2.11.021 OTU 2 seqs prokMSA_id:007303 AJ012069 Herbaspirillum G8A1 str. G8A1. prokMSA_id:058574 AJ505863 Herbaspirillum sp. PIV-34-1 strain PIV-34-1 2.28.2.11.023 OTU 3 seqs prokMSA_id:007288 AB008503 str. MY14. prokMSA_id:007289 AB008504 str. D-6. prokMSA_id:007290 AB008505 str. D-7. 2.28.2.11.024 OTU 1 seq prokMSA_id:007287 U62854 clone RB37. 2.28.2.11.025 OTU 1 seq prokMSA_id:007285 U62835 clone RB12. 2.28.2.11.026 OTU 1 seq prokMSA_id:016620 AF375832 Zoogloea sp. clone F8 2.28.2.11.027 OTU 6 seqs prokMSA_id:076737 AF431306 beta clone C46.12PG prokMSA_id:018940 AJ310394 Beta Ter6 isolate Ter6 prokMSA_id:032705 AJ310395 Beta Ter331 isolate Ter331 prokMSA_id:057763 AJ496444 Collimonas fungivorans strain CTE118 prokMSA_id:057762 AJ496445 Collimonas fungivorans strain CTE227 prokMSA_id:075668 AY154366 Herbaspirillum sp. Hg 1 2.28.2.11.028 OTU 1 seq prokMSA_id:019906 AB038368 Syncytium endosymbiont of Diaphorina citri 2.28.2.11.029 OTU 5 seqs prokMSA_id:020355 AF259596 Herbaspirillum CtaxAus-2 clone 2 prokMSA_id:072139 AF259598 Herbaspirillum CtaxAus-2 clone 34 prokMSA_id:069836 AF259610 Herbaspirillum CtaxMed-59 prokMSA_id:050410 AF364932 clone clL26b prokMSA_id:037687 AY053477 AT425_Eub48 2.28.2.11.030 OTU 1 seq prokMSA_id:020952 AF058385 Duganella clone MT18 2.28.2.11.031 OTU 1 seq prokMSA_id:021324 AF407411 clone RB13C5 2.28.2.11.033 OTU 1 seq prokMSA_id:022530 AF232922 MS8 2.28.2.11.034 OTU 2 seqs prokMSA_id:023044 AF236013 Beta A1020 prokMSA_id:036180 AF336360 Beta Wuba70 2.28.2.11.037 OTU 1 seq prokMSA_id:025557 AF407409 clone RB13C3 2.28.2.11.038 OTU 1 seq prokMSA_id:026384 AJ408960 clone HuCA4 2.28.2.11.041 OTU 1 seq prokMSA_id:027239 AJ295498 rape rhizosphere wr0040 2.28.2.11.042 OTU 1 seq prokMSA_id:027357 AJ387864 oxSCC-6 2.28.2.11.043 OTU 1 seq prokMSA_id:027849 AF234090 #0319-7F2 2.28.2.11.047 OTU 1 seq prokMSA_id:031333 AJ308395 clone S26-9 2.28.2.11.050 OTU 1 seq prokMSA_id:034181 AF408326 Massilia sp. clone KL-11-1-5 2.28.2.11.052 OTU 1 seq prokMSA_id:037211 AY038712 clone TAF-A167 2.28.2.11.055 OTU 2 seqs prokMSA_id:039233 Z88586 isolate HRV10 prokMSA_id:044013 Z88592 isolate HRV40 2.28.2.11.056 OTU 1 seq prokMSA_id:040673 AJ252636 Agricultural soil clone SC-I-45 2.28.2.11.057 OTU 1 seq prokMSA_id:055297 AF529324 beta clone CLi13 2.28.2.11.058 OTU 1 seq prokMSA_id:043089 AB054963 beta 1275a 2.28.2.11.059 OTU 1 seq prokMSA_id:043158 AF236011 Beta A0823 2.28.2.11.060 OTU 1 seq prokMSA_id:043311 AJ292585 WD264 clone WD264 2.28.2.11.061 OTU 2 seqs prokMSA_id:043330 AJ295484 rape rhizosphere wr0025 prokMSA_id:049894 AJ295516 rape rhizosphere wr0070 2.28.2.11.062 OTU 1 seq prokMSA_id:044186 AJ252617 Agricultural soil clone SC-I-14 2.28.2.11.063 OTU 1 seq prokMSA_id:045394 AF259609 Herbaspirillum CtaxMed-3 2.28.2.11.064 OTU 1 seq prokMSA_id:047661 AF389439 clone SRS62DBA09 2.28.2.11.065 OTU 1 seq prokMSA_id:050595 AF375828 Herbaspirillum sp. clone A13 2.28.2.11.070 OTU 1 seq prokMSA_id:060344 AF534196 clone Glu14 2.28.2.11.071 OTU 1 seq prokMSA_id:061035 AF530366 clone cadhufec118c10 2.28.2.11.074 OTU 2 seqs prokMSA_id:061829 AF529336 beta clone CLi51 prokMSA_id:094041 AJ582196 beta- clone Gitt-GS-155 2.28.2.11.075 OTU 1 seq prokMSA_id:062022 AF523331 clone P4-20 2.28.2.11.076 OTU 2 seqs prokMSA_id:062413 AF529102 beta clone FTL217 prokMSA_id:062403 AF529109 beta clone FTL254 2.28.2.11.077 OTU 1 seq prokMSA_id:062422 AF529095 beta clone FTL205 2.28.2.11.078 OTU 1 seq prokMSA_id:064070 AB087293 clone:CF15 2.28.2.11.079 OTU 1 seq prokMSA_id:065537 AY095425 yard-trimming-compost clone S-60 2.28.2.11.080 OTU 1 seq prokMSA_id:065563 AY095398 yard-trimming-compost clone S-27 2.28.2.11.082 OTU 5 seqs prokMSA_id:035397 AF154097 hydrocarbon seep BPC087 prokMSA_id:065564 AY095397 yard-trimming-compost clone S-26 prokMSA_id:059896 AY133100 beta clone ccspost2128 prokMSA_id:059892 AY133107 beta clone ccspost237 prokMSA_id:078721 AY177773 isolate 5g06 2.28.2.11.084 OTU 1 seq prokMSA_id:065795 AF507539 soil clone S0173 2.28.2.11.085 OTU 1 seq prokMSA_id:066520 AY100561 clone cvf56065 2.28.2.11.086 OTU 1 seq prokMSA_id:067839 AY082467 beta clone 44a-B1-39 2.28.2.11.087 OTU 1 seq prokMSA_id:070208 AY013693 Banisveld landfill BVC71 2.28.2.11.088 OTU 1 seq prokMSA_id:074451 AF361023 Herbaspirillum sp. NAH4 2.28.2.11.089 OTU 1 seq prokMSA_id:075238 AJ518781 beta clone JG37-AG-7 2.28.2.11.090 OTU 1 seq prokMSA_id:075250 AF431258 beta clone N27.62SM 2.28.2.11.091 OTU 1 seq prokMSA_id:075470 AJ532686 beta clone Gitt-KF-125 2.28.2.11.092 OTU 2 seqs prokMSA_id:075665 AJ534666 beta clone S15A-MN107 prokMSA_id:094668 AJ583172 beta- clone S15B-MN104 2.28.2.11.093 OTU 1 seq prokMSA_id:075756 AJ518783 beta clone JG37-AG-125 2.28.2.11.094 OTU 1 seq prokMSA_id:075873 AF431266 beta clone C32.22SM 2.28.2.11.095 OTU 1 seq prokMSA_id:076765 AJ532689 beta clone Gitt-KF-179 2.28.2.11.098 OTU 2 seqs prokMSA_id:078258 AJ508155 clone J2_10 prokMSA_id:077588 AJ508165 clone J2_22 2.28.2.11.099 OTU 1 seq prokMSA_id:078063 AJ508152 clone J2_5 2.28.2.11.100 OTU 1 seq prokMSA_id:078971 AY177774 isolate 4x33 2.28.2.11.105 OTU 1 seq prokMSA_id:080181 AY191272 Herbaspirillum seropedicae strain ZA69 2.28.2.11.106 OTU 1 seq prokMSA_id:081124 AY218707 clone KD7-19 2.28.2.11.107 OTU 2 seqs prokMSA_id:081252 AY214204 clone ZZ15C3 prokMSA_id:082198 AY214208 clone ZZ15C16 2.28.2.11.108 OTU 1 seq prokMSA_id:081351 AY218656 clone KD9-134 2.28.2.11.109 OTU 1 seq prokMSA_id:081596 AY218699 clone KD7-1 2.28.2.11.110 OTU 1 seq prokMSA_id:081640 AY218774 clone KD6-99 2.28.2.11.111 OTU 1 seq prokMSA_id:081997 AY214210 clone ZZ17C9 2.28.2.11.112 OTU 1 seq prokMSA_id:082273 AY218653 clone KD9-120 2.28.2.11.113 OTU 1 seq prokMSA_id:083570 AY274147 clone D142 2.28.2.11.114 OTU 2 seqs prokMSA_id:083755 AY214615 beta clone SL2-1-F9 prokMSA_id:084959 AY214642 beta clone SL2-1-D10 2.28.2.11.115 OTU 1 seq prokMSA_id:085451 AY274160 clone D43 2.28.2.11.122 OTU 109 seqs prokMSA_id:007291 AB008506 str. ND5. prokMSA_id:007333 AB010865 str. HTC018. prokMSA_id:007334 AB010869 str. HTB091. prokMSA_id:021572 AB024305 Matsuebacter sp. 9 prokMSA_id:066301 AB074523 Aquaspirillum arcticum prokMSA_id:056608 AB074524 Aquaspirillum autotrophicum prokMSA_id:075713 AB086018 Zoogloea sp. PL001 prokMSA_id:087718 AB097171 Janthinobacterium sp. J4 prokMSA_id:087579 AB097172 Janthinobacterium sp. J3 prokMSA_id:007351 AF001645 Zoogloea OCS7. prokMSA_id:007331 AF026984 clone OPS122. prokMSA_id:007325 AF050528 clone WFeA1-06. prokMSA_id:007330 AF067655 clone CTHB-18. prokMSA_id:007332 AF174648 Janthinobacterium lividum str. BD17-1. prokMSA_id:030333 AF190216 Beta RSHD3S6 prokMSA_id:016468 AF220312 O11E3 prokMSA_id:019176 AF287032 beta EC-B4 prokMSA_id:030010 AF321021 Zoogloea sp. GOBB3-C110 prokMSA_id:038549 AF321033 Zoogloea sp. GOBB3-C109 prokMSA_id:019827 AF336351 Beta Wuba26 prokMSA_id:051529 AF336359 Beta Wuba68 prokMSA_id:022796 AF336362 Beta Wuba73 prokMSA_id:026437 AF358019 clone LO13.5 prokMSA_id:024431 AF411828 Beta PCSC1 prokMSA_id:033415 AF422608 clone t038 prokMSA_id:076579 AF431259 beta clone N27.66SM prokMSA_id:089060 AF443565 clone O-CF-10 prokMSA_id:089063 AF443566 clone O-CF-31 prokMSA_id:089963 AF443582 clone C-F-17 prokMSA_id:079895 AF468241 clone ARKDMS-28 prokMSA_id:080915 AF468301 clone ARKICE-119 prokMSA_id:080776 AF468323 clone ARKMP-22 prokMSA_id:080693 AF468324 clone ARKMP-20 prokMSA_id:079839 AF468325 clone ARKMP-27 prokMSA_id:080338 AF468329 clone ARKMP-56 prokMSA_id:080972 AF468330 clone ARKMP-110 prokMSA_id:079952 AF468331 clone ARKMP-113 prokMSA_id:080876 AF468343 Arctic sea ice ARK10118 prokMSA_id:080130 AF468344 Arctic sea ice ARK10150 prokMSA_id:079836 AF468345 Arctic sea ice ARK10157 prokMSA_id:080342 AF468346 Arctic sea ice ARK10162 prokMSA_id:080104 AF468347 Arctic sea ice ARK10170 prokMSA_id:079901 AF468348 Arctic sea ice ARK10172 prokMSA_id:079788 AF468349 Arctic sea ice ARK10284 prokMSA_id:080242 AF468350 Arctic sea ice ARK10299 prokMSA_id:068775 AF479326 Glacial ice CanDirty89 prokMSA_id:065666 AF507725 soil clone S133 prokMSA_id:065651 AF507741 soil clone S173 prokMSA_id:065638 AF507756 soil clone S1133 prokMSA_id:062419 AF529096 beta clone ftl206 prokMSA_id:062402 AF529111 beta clone FTL28 prokMSA_id:061811 AF529353 beta clone CLs79 prokMSA_id:061808 AF529358 beta clone CLs99 prokMSA_id:076423 AF543312 Herbaspirillum lusitanum complete prokMSA_id:034084 AJ001384 sp. isolate K1 prokMSA_id:026824 AJ252575 Agricultural soil isolate SI-5 prokMSA_id:024247 AJ252639 Agricultural soil clone SC-I-50 prokMSA_id:074595 AJ292625 WD293 clone WD293 prokMSA_id:037561 AJ307934 mRNA clone sipK84 prokMSA_id:084410 AJ440982 Antarctic R-7614 strain R-7614 prokMSA_id:083537 AJ440985 Antarctic R-7687 strain R-7687 prokMSA_id:063192 AJ496038 Oxalobacter sp. p8E prokMSA_id:093291 AJ551147 Janthinobacterium sp. An8 isolate An8 prokMSA_id:085781 AJ556800 Oxalobacteraceae MWH73 prokMSA_id:096368 AJ575694 beta clone NE05 prokMSA_id:094149 AJ582190 beta- clone Gitt-GS-102 prokMSA_id:093221 AJ582193 beta- clone Gitt-GS-172 prokMSA_id:094238 AJ582194 beta- clone Gitt-GS-138 prokMSA_id:096098 AJ585219 Janthinobacterium lividum strain PS-WolfK2 prokMSA_id:023446 AY038711 clone TAF-A214 prokMSA_id:049080 AY039831 Zoogloea ramigera strain jshs9 prokMSA_id:061192 AY080915 clone UP9 prokMSA_id:065529 AY095436 yard-trimming-compost clone S-75 prokMSA_id:073300 AY129794 Duganella sp. clone GCPF21 prokMSA_id:075326 AY157759 Massilia timonae strain 85A2206 prokMSA_id:074938 AY157760 Massilia timonae strain 97A4424 prokMSA_id:075063 AY157761 Massilia timonae strain 99A9205 prokMSA_id:076810 AY157762 Massilia cf. timonae strain 96A14209 prokMSA_id:078676 AY159797 Massilia sp. B36 prokMSA_id:078767 AY177372 Massilia sp. 72 prokMSA_id:079075 AY177375 Phenanthrene-degrading 70-2 prokMSA_id:081931 AY192034 beta clone G27-GM4R prokMSA_id:080971 AY198105 clone ARKMP10 prokMSA_id:080818 AY198106 clone ARKMP80 prokMSA_id:079614 AY198107 clone ARKMP90 prokMSA_id:080296 AY198108 clone ARKMP92 prokMSA_id:079646 AY198109 clone ARKMP91 prokMSA_id:081118 AY206870 clone uvs_af17 prokMSA_id:081187 AY218685 clone KD8-140 prokMSA_id:082371 AY218739 clone KD5-6 prokMSA_id:081248 AY227004 Arctic sea ice ARK10167 isolate ARK10167 prokMSA_id:083280 AY247410 Janthinobacterium lividum prokMSA_id:083836 AY250094 clone 29 prokMSA_id:087409 AY278937 Duganella sp. TB39 prokMSA_id:091549 AY337598 Beta EC4 prokMSA_id:091072 AY344370 clone K2-30-5 prokMSA_id:091268 AY345390 G9 prokMSA_id:091642 AY345545 H9 prokMSA_id:091501 AY345557 H15 prokMSA_id:092150 AY359823 Janthinobacterium sp. clone cEIII5 prokMSA_id:092400 AY359827 Janthinobacterium sp. clone cEIII11 prokMSA_id:093490 AY367012 Ultramicrobacterium str. Um1 prokMSA_id:097562 AY378207 Extreme arid zone HX-IIF06 prokMSA_id:095642 AY378283 Permafrost DT-IV29 prokMSA_id:007282 U34035 str. PUS10.40. prokMSA_id:007352 U54470 unnamed organism. prokMSA_id:007349 X74914 Duganella zoogloeoides ATCC 25935. prokMSA_id:022305 Y08845 J.agaricidamnosum prokMSA_id:007323 Y08846 Janthinobacterium lividum str. H-24 DSM 1522 . 2.28.2.11.123 OTU 1 seq prokMSA_id:088301 AF443584 clone C-F-25 2.28.2.11.124 OTU 2 seqs prokMSA_id:090733 AY328744 DSSD46 prokMSA_id:089588 AY328779 DSSD82 2.28.2.11.125 OTU 1 seq prokMSA_id:089772 AJ565421 Beta MWH-UniP1 isolate MWH-UniP1 2.28.2.11.126 OTU 1 seq prokMSA_id:090227 AY315179 Glacier FXS9 2.28.2.11.127 OTU 1 seq prokMSA_id:090518 AY315180 Glacier FJI10 2.28.2.11.128 OTU 4 seqs prokMSA_id:098773 AJ575691 beta clone SW15 prokMSA_id:096491 AJ575692 beta clone SW38 prokMSA_id:096354 AJ575693 beta clone SW20 prokMSA_id:091343 AY345556 H12 2.28.2.11.129 OTU 1 seq prokMSA_id:092460 AY359837 Janthinobacterium sp. clone cEIII43 2.28.2.11.130 OTU 1 seq prokMSA_id:092929 AY359838 beta clone cEIII47 2.28.2.11.131 OTU 1 seq prokMSA_id:093350 AY367037 Herbaspirillum sp. Chnp3-5 2.28.2.11.132 OTU 1 seq prokMSA_id:093530 AJ582188 beta- clone Gitt-GS-89 2.28.2.11.133 OTU 1 seq prokMSA_id:093999 AJ582187 beta- clone Gitt-GS-70 2.28.2.11.134 OTU 1 seq prokMSA_id:094289 AY376163 Duganella violaceusniger strain YIM 31327 2.28.2.11.135 OTU 3 seqs prokMSA_id:096884 AY378203 Extreme arid zone HX-IE74 prokMSA_id:098772 AY378226 Glacial ice ML-E4 prokMSA_id:095253 AY378282 Permafrost DT-IV28 2.28.2.11.136 OTU 1 seq prokMSA_id:096355 AY381286 clone Lgja-64 2.28.2.11.137 OTU 2 seqs prokMSA_id:097708 AB089481 Derxia gummosa complete strain:IAM14990 prokMSA_id:096705 AB089482 Derxia gummosa complete strain:IAM13946 2.28.2.11.138 OTU 1 seq prokMSA_id:097163 AJ575697 beta clone SW57 2.28.2.11.139 OTU 1 seq prokMSA_id:097201 AJ575696 beta clone NE62 2.28.2.11.140 OTU 1 seq prokMSA_id:097447 AJ575695 beta clone NE45 2.28.2.11.999 poor quality 298 seqs prokMSA_id:038554 AB010605 clone ASB004 prokMSA_id:026959 AB011716 beta strain: G13001 prokMSA_id:033865 AB011717 beta strain: G13016 prokMSA_id:026218 AB011718 beta strain: G13018 prokMSA_id:018008 AB011719 beta strain: G13036 prokMSA_id:045686 AB011720 beta strain: G13042 prokMSA_id:041249 AB011721 beta strain: G13002 prokMSA_id:050581 AB011722 beta strain: G13013 prokMSA_id:053326 AB011723 beta strain: G13035 prokMSA_id:021961 AB011724 beta strain: G13109 prokMSA_id:050300 AB011725 beta strain: G13223 prokMSA_id:047901 AB011726 beta strain: G13040 prokMSA_id:017674 AB011727 beta strain: G13045 prokMSA_id:038175 AB011728 beta strain: G13127 prokMSA_id:037496 AB011737 beta strain: G21012 prokMSA_id:047443 AB011738 beta strain: G23025 prokMSA_id:024463 AB011744 beta strain: G23001 prokMSA_id:026325 AB011746 beta strain: G23031 prokMSA_id:040177 AB013410 Beta MB9 prokMSA_id:050498 AB013412 Beta MB12 prokMSA_id:049508 AB013413 Beta MB13 prokMSA_id:033490 AB013417 Beta MB17 prokMSA_id:035671 AB013419 Beta MC2 prokMSA_id:049315 AB013422 Beta MC9 prokMSA_id:031368 AB013423 Beta MC10 prokMSA_id:025760 AB013427 Beta ML6 prokMSA_id:007327 AB021388 Pseudomonas mephitica ATCC 33665. prokMSA_id:028850 AB023608 NIC017 prokMSA_id:038922 AB027694 Herbaspirillum sp. B39 prokMSA_id:017456 AB042420 Vestimentiferan symbiont TW-5 prokMSA_id:019430 AB047126 ONG1 prokMSA_id:041623 AB047127 ONG1' prokMSA_id:023264 AB054965 Pseudomonas sp. 1093 prokMSA_id:074911 AB075052 clone:KCS9 prokMSA_id:076834 AB075119 clone:KSR6 prokMSA_id:068645 AB081810 seuence clone:A-03 prokMSA_id:064054 AB087312 clone:CF36 prokMSA_id:064016 AB087354 clone:F16 prokMSA_id:084965 AB098011 Beta ANRW5-2 prokMSA_id:086145 AB098012 Beta ANRW7-1 prokMSA_id:087791 AB099800 clone: OLDB-B11 prokMSA_id:083482 AB107166 Beta W-2002 parital prokMSA_id:084534 AB107174 Beta W-2009 parital prokMSA_id:085542 AB107180 Beta W-2016 parital prokMSA_id:085260 AB107198 Beta W-2049 parital prokMSA_id:027272 AF010050 prokMSA_id:024143 AF016530 HRS-17 prokMSA_id:030550 AF016749 soil clone S-38 prokMSA_id:025983 AF016752 soil clone S-41 prokMSA_id:039489 AF018000 t2702a prokMSA_id:047401 AF018008 T2705b prokMSA_id:039738 AF018016 T2721a prokMSA_id:027946 AF018025 T2778c prokMSA_id:051238 AF018026 T2784c prokMSA_id:020762 AF018052 OS9C prokMSA_id:073842 AF018055 OS9B prokMSA_id:027439 AF019941 Zoogloea clone I prokMSA_id:007338 AF035047 unnamed organism. prokMSA_id:026315 AF058387 Duganella clone GPMT3 prokMSA_id:046509 AF058388 Duganella clone MTseq15 prokMSA_id:022031 AF090539 BHB9 prokMSA_id:039154 AF103811 soil C3 prokMSA_id:073812 AF107504 SY2-3 prokMSA_id:025455 AF141449 beta clone CRE-FL22 prokMSA_id:049656 AF141600 beta clone CRO-FL25 prokMSA_id:007305 AF164042 Herbaspirillum AB7 str. AB7. prokMSA_id:007312 AF164060 Herbaspirillum BA134 str. BA134. prokMSA_id:049183 AF175580 WJGRT-2 prokMSA_id:042135 AF175583 WJGRT-5 prokMSA_id:038708 AF175589 WJGRT-16 prokMSA_id:052608 AF175603 WJGRT-45 prokMSA_id:030909 AF175612 WJGRT-68 prokMSA_id:069557 AF175616 WJGRT-73 prokMSA_id:074866 AF175628 WJGRT-96 prokMSA_id:041983 AF175646 WJGRT-143 prokMSA_id:024013 AF183152 Soil isolate KBS-EC4 prokMSA_id:077420 AF188874 1G6 prokMSA_id:077364 AF188879 M4 prokMSA_id:035965 AF210793 Pseudomonas sp. CAFB-eben-2 prokMSA_id:031581 AF210796 Ralstonia sp. CAFB-JP4-2 prokMSA_id:018042 AF210797 Ralstonia sp. CAFB-JP4-3 prokMSA_id:023176 AF210801 Ralstonia sp. CAFB-naph-1 prokMSA_id:017236 AF210802 Ralstonia sp. CAFB-naph-2 prokMSA_id:036538 AF210803 Ralstonia sp. CAFB-naph-3 prokMSA_id:028886 AF210804 Ralstonia sp. CAFB-naph-4 prokMSA_id:023941 AF210809 Ralstonia sp. CAFB-pxyl-3 prokMSA_id:034098 AF211822 Beta BPSI-2 prokMSA_id:047710 AF211823 Beta BPSI-4 prokMSA_id:029552 AF216514 SkelCos6-17 prokMSA_id:032311 AF226180 Maize root ZmrIs2A prokMSA_id:027622 AF226189 Maize root ZmrIs25 prokMSA_id:043260 AF226240 maize root Zmrc228 prokMSA_id:034171 AF226245 maize root Zmrc240 prokMSA_id:040688 AF226246 maize root Zmrc251 prokMSA_id:049452 AF234082 #0319-6M24 prokMSA_id:024369 AF240145 Grassland soil TSA-20 prokMSA_id:042854 AF286171 IAFBC8 prokMSA_id:073048 AF286173 IAFBD3 prokMSA_id:037668 AF289899 beta Kmlps6-1 prokMSA_id:049291 AF297697 Telluria mixta prokMSA_id:032160 AF326087 Janthinobacterium lividum prokMSA_id:020464 AF337851 copper smeltery D100 prokMSA_id:045839 AF364938 clone clL34b prokMSA_id:049362 AF375829 Zoogloea sp. clone A20 prokMSA_id:041818 AF379025 clone EV11 prokMSA_id:026941 AF389436 clone SRS62DBA03 prokMSA_id:041620 AF389443 clone SRS62DBA19 prokMSA_id:019572 AF392637 clone SCA10 prokMSA_id:020895 AF392656 clone LBF2 prokMSA_id:032610 AF428594 clone CRD99-16 prokMSA_id:037342 AF428617 clone CRD99-39 prokMSA_id:035271 AF428630 clone CRD99-52 prokMSA_id:029009 AF428725 clone CRP99-71 prokMSA_id:042279 AF429212 clone CR99-2-26 prokMSA_id:076639 AF431215 beta clone N11.114WL prokMSA_id:077082 AF431218 beta clone N11.130WL prokMSA_id:074975 AF431220 beta clone N11.138WL prokMSA_id:074981 AF431221 beta clone N11.142WL prokMSA_id:076802 AF431224 beta clone N12.04WL prokMSA_id:075316 AF431226 beta clone N12.24WL prokMSA_id:076973 AF431235 beta clone C16.56WL prokMSA_id:076812 AF431251 beta clone N26.127SM prokMSA_id:076344 AF431252 beta clone N26.147SM prokMSA_id:076725 AF431261 beta clone C31.64SM prokMSA_id:075624 AF431262 beta clone C32.09SM prokMSA_id:076432 AF431272 beta clone C32.43SM prokMSA_id:076763 AF431277 beta clone S36.05SM prokMSA_id:076697 AF431287 beta clone S37.15SM prokMSA_id:076747 AF431290 beta clone S37.28SM prokMSA_id:076594 AF431305 beta clone N42.71PG prokMSA_id:075929 AF431311 beta clone C47.13PG prokMSA_id:076620 AF431321 beta clone S52.03PG prokMSA_id:075985 AF431323 beta clone S52.06PG prokMSA_id:076619 AF431324 beta clone S52.18PG prokMSA_id:076181 AF431329 beta clone S52.50PG prokMSA_id:027471 AF451846 Zoogloea sp. dN prokMSA_id:032769 AF473963 beta A190-9 prokMSA_id:025245 AF473989 beta 68-47 prokMSA_id:077299 AF477799 beta clone AGCM40 prokMSA_id:077336 AF477800 beta clone AGCY16 prokMSA_id:077441 AF477801 beta clone AGCO45 prokMSA_id:077422 AF477802 beta clone AGCO7 prokMSA_id:077534 AF477805 beta clone AGCM7 prokMSA_id:077285 AF477807 beta clone AGCM42 prokMSA_id:068792 AF481835 Massilia sp. TRP5:2-1 prokMSA_id:060492 AF488648 Beta Z13 prokMSA_id:060481 AF488664 Beta Z29 prokMSA_id:060478 AF488665 Beta Z30 prokMSA_id:067246 AF495442 clone F13.50 prokMSA_id:086385 AF499886 clone ABLC70 prokMSA_id:084620 AF499887 clone ABLC55 prokMSA_id:084386 AF499897 clone ABLCf2 prokMSA_id:056182 AF507423 soil clone C0107 prokMSA_id:065736 AF507644 soil clone C1211 prokMSA_id:061795 AF530044 Collimonas sp. NCCB 100030 prokMSA_id:061792 AF530045 Collimonas sp. NCCB 100029 prokMSA_id:071144 AF530046 Collimonas sp. NCCB 100027 prokMSA_id:074814 AF530047 Collimonas sp. NCCB 100026 prokMSA_id:070744 AF530048 Collimonas sp. NCCB 100025 prokMSA_id:073439 AF530049 Collimonas sp. NCCB 100031 prokMSA_id:071104 AF530959 Beta zj34 prokMSA_id:069591 AF531025 Beta Mzo1 prokMSA_id:060972 AF532133 Beta A-A7-3 prokMSA_id:075461 AF538342 isolate ENV-MO-0010 prokMSA_id:059478 AF540017 Nitrosomonadaceae J2_1 prokMSA_id:077268 AF550596 beta clone LiUU-1-5c prokMSA_id:038803 AJ132330 Janthinobacterium sp. clone DDGE band D prokMSA_id:025592 AJ244341 Riz1052 prokMSA_id:040412 AJ251070 Duganella zoogloeoides strain 14A15aZ prokMSA_id:019367 AJ289966 isolate CBM5-2 prokMSA_id:071321 AJ289967 isolate CBM5-26 prokMSA_id:046446 AJ289969 isolate CBM5-43 prokMSA_id:022524 AJ289979 isolate CBS4-41 prokMSA_id:018577 AJ289981 isolate CBS4-9 prokMSA_id:034860 AJ295517 rape rhizosphere wr0071 prokMSA_id:045629 AJ297446 Duganella aff. zoogloeoides 14.15 prokMSA_id:074126 AJ308275 clone F99_14a prokMSA_id:032649 AJ308284 clone F99_23 prokMSA_id:019420 AJ314699 clone s6 prokMSA_id:044530 AJ314700 clone s15 prokMSA_id:030152 AJ314701 clone s25 prokMSA_id:036082 AJ314702 clone sl2218 prokMSA_id:035812 AJ314703 clone sl1417 prokMSA_id:036356 AJ314704 clone slf526 prokMSA_id:074567 AJ404490 Janthinobacterium BU2 prokMSA_id:071111 AJ404549 beta- B-2 prokMSA_id:033855 AJ419651 clone R31 prokMSA_id:072190 AJ421199 clone C3-K3 prokMSA_id:076850 AJ428137 isolate band mw-b1 prokMSA_id:077137 AJ428138 isolate band mw-b2 prokMSA_id:075608 AJ428146 isolate band i-b3 prokMSA_id:075488 AJ428147 isolate band i-b4 prokMSA_id:075512 AJ428153 isolate band ao-b1 prokMSA_id:076770 AJ428179 isolate band i-b1 prokMSA_id:075636 AJ428180 isolate band ao-b2 prokMSA_id:067486 AJ430686 Herbaspirillum sp. DA1 strain DA1 prokMSA_id:020243 AJ431294 clone 1_40 prokMSA_id:071973 AJ437404 clone 32_101 prokMSA_id:040345 AJ437407 clone 1_32_121 prokMSA_id:072042 AJ437452 clone 1_32_309 prokMSA_id:070724 AJ437464 clone 1_32_408 prokMSA_id:077820 AJ508150 clone J2_1 prokMSA_id:078069 AJ508157 clone J2_13 prokMSA_id:078169 AJ508160 clone J2_17 prokMSA_id:078306 AJ508162 clone J2_19 prokMSA_id:078195 AJ508163 clone J2_20 prokMSA_id:078384 AJ508164 clone J2_21 prokMSA_id:078176 AJ508166 clone J2_25 prokMSA_id:078059 AJ508167 clone J2_27 prokMSA_id:078065 AJ508169 clone J2_34 prokMSA_id:077640 AJ508173 clone J2_45 prokMSA_id:078057 AJ508175 clone J2_48 prokMSA_id:077972 AJ508177 clone J2_60 prokMSA_id:057313 AJ518132 clone Mul01-67 prokMSA_id:057308 AJ518136 clone Mul01-71 prokMSA_id:057303 AJ518140 clone Mul01-89 prokMSA_id:057186 AJ518329 clone Neu2P1-68 prokMSA_id:096692 AJ555434 clone SE23B prokMSA_id:096353 AJ555439 clone CE01 prokMSA_id:088071 AJ575076 Collimonas fungivorans strain A8 prokMSA_id:089914 AJ575087 Collimonas fungivorans strain A23 prokMSA_id:089102 AJ577119 beta clone 42 prokMSA_id:093893 AJ581631 beta clone SB2 prokMSA_id:093336 AJ581633 beta clone SB4 prokMSA_id:094026 AJ581636 beta clone SB5 prokMSA_id:098663 AJ585218 Janthinobacterium lividum strain PS-PfuK1 prokMSA_id:044221 AY037565 soil clone S015 prokMSA_id:042255 AY037880 clone CD1A9 prokMSA_id:022679 AY039387 Earthworm burrow B5D1 prokMSA_id:018268 AY039390 Earthworm cast C4M1 prokMSA_id:061609 AY043581 Forest soil 2S2.B6 prokMSA_id:061605 AY043595 Forest soil 5S2.E9 prokMSA_id:055570 AY043596 Forest soil 5S2.C8 prokMSA_id:061559 AY043652 beta clone NOW2.100WL prokMSA_id:061541 AY043674 beta clone NOS7.130WL prokMSA_id:056526 AY043678 beta clone NOS7.165WL prokMSA_id:061450 AY043784 beta clone SMW4.29WL prokMSA_id:061447 AY043788 beta clone NMS8.125WL prokMSA_id:061437 AY043797 gamma clone NMW3.217WL prokMSA_id:061415 AY043820 gamma clone SMS9.74WL prokMSA_id:070567 AY044090 Janthinobacterium sp. N prokMSA_id:075290 AY061962 Pseudomonas sp. TA17 prokMSA_id:059515 AY136527 Beta A-O7-18 prokMSA_id:077409 AY139002 beta pIF16S2-42 prokMSA_id:071614 AY143768 beta clone Lur49 prokMSA_id:069406 AY144232 beta clone LTUB11214 prokMSA_id:071168 AY146665 Beta K13 prokMSA_id:077503 AY170460 Beta AQ33 prokMSA_id:081509 AY187430 clone SA90 prokMSA_id:080361 AY192301 beta clone W2b-7F prokMSA_id:080007 AY192304 beta clone W3-2G prokMSA_id:080687 AY193025 clone WSB8 prokMSA_id:086327 AY214710 beta clone SL2-2-E10F prokMSA_id:083258 AY214758 alpha clone BB-1-E8 prokMSA_id:084607 AY217460 beta clone WCB190 prokMSA_id:085921 AY217466 beta clone WCB26 prokMSA_id:086074 AY221055 clone CCM1b prokMSA_id:088771 AY274179 beta SSCP band S10 prokMSA_id:090035 AY274180 beta SSCP band S11 prokMSA_id:089490 AY274183 beta SSCP band S14 prokMSA_id:087752 AY278883 Beta T2-17 prokMSA_id:090406 AY289449 soil clone DS-219 prokMSA_id:094048 AY357955 Janthinobacterium sp. cEV12 prokMSA_id:093419 AY357969 beta cEV27 prokMSA_id:094255 AY357973 beta cEV32 prokMSA_id:093233 AY367035 Oxalobacter sp. Chnp3-1 prokMSA_id:096200 AY395136 clone D14ST prokMSA_id:007337 D26245 soil from paddy field clone PAD58. prokMSA_id:007339 D28794 str. Kw55. prokMSA_id:007353 D84564 Zoogloea sp. str. S21012. prokMSA_id:007354 D84572 Zoogloea sp. str. S21104. prokMSA_id:007355 D84574 Zoogloea sp. str. S21111. prokMSA_id:007356 D84576 Zoogloea sp. str. S21124. prokMSA_id:007357 D84577 Zoogloea sp. str. S21125. prokMSA_id:007358 D84580 Zoogloea sp. str. S22201. prokMSA_id:007359 D84582 Zoogloea sp. str. S22204. prokMSA_id:007360 D84590 Zoogloea sp. str. S22229. prokMSA_id:007361 D84593 Zoogloea sp. str. S22235. prokMSA_id:007293 D84603 str. S23317. prokMSA_id:007294 D84611 str. S23335. prokMSA_id:007328 D84620 str. S23417. prokMSA_id:007329 D84625 str. S23434. prokMSA_id:007341 NONE Oxalobacter formigenes str. OxB ATCC 35274 . prokMSA_id:007281 U09778 clone JAP405. prokMSA_id:007322 U12216 str. B0265. prokMSA_id:024009 U31478 beta RS1Y rrs prokMSA_id:007362 U31479 str. RS2. prokMSA_id:007286 U62851 clone RB33. prokMSA_id:034436 U63941 Zoogloea sp. prokMSA_id:007342 X84459 str. SBR1014. prokMSA_id:007315 X91183 clone G11. prokMSA_id:007336 X91274 clone G22. prokMSA_id:007348 X91293 Bangombe boreholes at depth of 5-105m clone G41. prokMSA_id:007363 X91463 clone A40t. prokMSA_id:007340 X91526 clone K11. prokMSA_id:007297 X97094 str. TM221. prokMSA_id:007298 X97095 str. TM252. prokMSA_id:007350 Y11627 clone 57. 2.28.2.12 PNB.NECESSARIUS_GROUP 127 seqs 2.28.2.12.006 OTU 2 seqs prokMSA_id:085148 AF534432 beta clone TLM08/TLMdgge25a prokMSA_id:007375 U85123 clone ACK-L6. 2.28.2.12.008 OTU 48 seqs prokMSA_id:070009 AF289154 beta clone PRD01a006B prokMSA_id:044315 AF361192 beta clone 06 prokMSA_id:023357 AF361194 beta clone 27 prokMSA_id:024516 AF361204 beta clone 28 prokMSA_id:086341 AF534427 beta clone TLM03/TLMdgge33 prokMSA_id:028305 AJ289990 FukuN109 prokMSA_id:016472 AJ289997 FukuN33 prokMSA_id:072324 AJ290013 FukuS35 prokMSA_id:025062 AJ290020 FukuS99 prokMSA_id:072506 AJ290046 FukuS129 prokMSA_id:043415 AJ290051 FukuS191 prokMSA_id:024264 AJ290052 FukuS183 prokMSA_id:022870 AJ290074 FukuS36 prokMSA_id:052483 AJ290077 FukuN60 prokMSA_id:085249 AJ550649 Beta MWH-MoNR1 prokMSA_id:084500 AJ550650 Beta MWH-MoNR2 prokMSA_id:084154 AJ550651 Beta MWH-VicM1 prokMSA_id:086040 AJ550652 Beta MWH-MoK1 prokMSA_id:085828 AJ550653 Beta MWH-MoK3 prokMSA_id:083449 AJ550654 Beta MWH-MoK4 prokMSA_id:085580 AJ550655 Beta MWH-CaK5 prokMSA_id:085445 AJ550656 Beta MWH-BeK4 prokMSA_id:084339 AJ550657 Beta MWH-JaK3 prokMSA_id:083765 AJ550658 Beta MWH-JaW7 prokMSA_id:086152 AJ550659 Beta MWH-JaW9 prokMSA_id:084831 AJ550660 Beta MWH-JaW21 prokMSA_id:084562 AJ550661 Beta MWH-TaW3 prokMSA_id:083856 AJ550662 Beta MWH-T1W13 prokMSA_id:085777 AJ550663 Beta MWH-T2W13 prokMSA_id:084619 AJ550664 Beta MWH-T2W17 prokMSA_id:084229 AJ550665 Beta MWH-HuK1 prokMSA_id:086483 AJ550666 Beta MWH-HuW1 prokMSA_id:083527 AJ550667 Beta MWH-CaK1 prokMSA_id:082497 AJ550668 Beta MWH-T2W3 prokMSA_id:085207 AJ550669 Beta MWH-T1W2 prokMSA_id:085167 AJ550670 Beta MWH-T1W11 prokMSA_id:083428 AJ550671 Beta MWH-MoIso1 prokMSA_id:082561 AJ550672 Beta MWH-MoIso2 prokMSA_id:082748 AJ550673 Beta MWH-MoK7 prokMSA_id:097437 AJ575687 beta clone NE58 prokMSA_id:095621 AJ575689 beta clone SW76 prokMSA_id:071396 AY145606 beta clone DC11-0-2 prokMSA_id:091674 AY345578 clone GLBR-49 prokMSA_id:007377 U76099 Alcaligenes arc31. prokMSA_id:007374 U85122 clone ACK-L5. prokMSA_id:007376 U85124 clone ACK-C4. prokMSA_id:007373 X93019 Polynucleobacter necessarius. prokMSA_id:007378 Z99998 str. LD17. 2.28.2.12.009 OTU 1 seq prokMSA_id:091057 AY345532 clone LWSR-76 2.28.2.12.999 poor quality 76 seqs prokMSA_id:038331 AF141398 beta clone CR-FL13 prokMSA_id:042831 AF141404 beta clone CR-FL22 prokMSA_id:050152 AF141405 beta clone CR-FL23 prokMSA_id:028319 AF141441 beta clone CRE-FL11 prokMSA_id:018436 AF141443 beta clone CRE-FL14 prokMSA_id:051668 AF141453 beta clone CRE-FL26 prokMSA_id:034740 AF141465 beta clone CRE-FL45 prokMSA_id:029532 AF141491 beta clone CRE-FL78 prokMSA_id:041436 AF141492 beta clone CRE-FL79 prokMSA_id:038893 AF141507 beta clone CRE-PA22 prokMSA_id:042800 AF337212 clone LCo76 prokMSA_id:039122 AF428611 clone CRD99-33 prokMSA_id:021595 AF428615 clone CRD99-37 prokMSA_id:019400 AF428634 clone CRD99-56 prokMSA_id:019971 AF428639 clone CRD99-61 prokMSA_id:049195 AF428733 clone CR98-5-03 prokMSA_id:043419 AF428822 clone CR98-24-16 prokMSA_id:029969 AF428875 clone CR98-24-69 prokMSA_id:017610 AF428946 clone CR98-35-64 prokMSA_id:029531 AF428968 clone CR99-35-10 prokMSA_id:049318 AF428980 clone CR99-35-22 prokMSA_id:027655 AF429054 clone CR99-7-20 prokMSA_id:051047 AF429073 clone CR99-7-39 prokMSA_id:035159 AF429078 clone CR99-7-44 prokMSA_id:051511 AF429140 clone CR99-24-30 prokMSA_id:052752 AF429145 clone CR99-24-35 prokMSA_id:043671 AF429196 clone CR99-2-10 prokMSA_id:043742 AF429222 clone CR99-2-36 prokMSA_id:027502 AF429235 clone CR99-2-49 prokMSA_id:051598 AF429244 clone CR99-2-58 prokMSA_id:060503 AF488636 Beta Z1 prokMSA_id:060501 AF488640 Beta Z5 prokMSA_id:060496 AF488645 Beta Z10 prokMSA_id:060482 AF488661 Beta Z26 prokMSA_id:060476 AF488666 Beta Z31 prokMSA_id:060477 AF488667 Beta Z32 prokMSA_id:060475 AF488668 Beta Z33 prokMSA_id:060471 AF488671 beta clone Z36 prokMSA_id:055555 AF497887 beta isolate WL8-0 prokMSA_id:069387 AF530937 Beta wj16 prokMSA_id:069720 AF530982 Beta wo04 prokMSA_id:074183 AF531010 Beta zo43 prokMSA_id:069281 AF531013 Beta Mwj1 prokMSA_id:072516 AF531027 Beta Mzo3 prokMSA_id:075361 AF550597 beta clone LiUU-1-6 prokMSA_id:077226 AF550598 beta clone LiUU-1-7A prokMSA_id:076002 AF550599 beta clone LiUU-1-7B prokMSA_id:076849 AF550600 beta clone LiUU-1-7C prokMSA_id:034177 AJ011159 4-41 clone 4-41 prokMSA_id:072705 AJ239998 beta strain DGGE band CIBAC-11 prokMSA_id:039971 AJ287638 beta 183ev prokMSA_id:044887 AJ290017 FukuS89 prokMSA_id:040281 AJ290073 FukuN2 prokMSA_id:071662 AJ290075 FukuS12 prokMSA_id:048589 AJ290076 FukuS21 prokMSA_id:026397 AJ290078 FukuN66 prokMSA_id:061695 AJ416249 clone Sta4-40 prokMSA_id:077614 AJ508171 clone J2_26 prokMSA_id:078003 AJ508179 clone J3_4 prokMSA_id:060891 AY135878 clone SG1-88 prokMSA_id:069128 AY145605 beta clone DC11-0-1 prokMSA_id:092507 AY184380 beta isolate DGGE gel band O3 prokMSA_id:081814 AY187422 clone SA66 prokMSA_id:081542 AY187433 clone SA107 prokMSA_id:081328 AY187478 clone SC9 prokMSA_id:081560 AY187480 clone SC17 prokMSA_id:082167 AY193945 clone SB120 prokMSA_id:074283 U85125 beta clone ACK-SA9 prokMSA_id:023128 U85126 beta clone ACK-C41 prokMSA_id:029763 U85127 beta clone ACK-M7 prokMSA_id:052664 U85128 beta clone ACK-M51 prokMSA_id:072625 U85129 beta clone ACK-M47 prokMSA_id:019405 U85130 beta clone ACK-GR6 prokMSA_id:044920 U85131 beta clone ACK-GR2 prokMSA_id:070563 U85132 beta clone ACK-SA6 prokMSA_id:007379 X91466 clone A43L. 2.28.2.13 RAL.EUTROPHA_GROUP 198 seqs 2.28.2.13.009 OTU 100 seqs prokMSA_id:058406 AB007995 Ralstonia eutropha prokMSA_id:007383 AB007998 Ralstonia sp. str. MBIC3838. prokMSA_id:007389 AB015605 Ralstonia eutropha str. KT1. prokMSA_id:007402 AB017488 Ralstonia MBIC3902 str. MBIC3902. prokMSA_id:050357 AB031995 Ralstonia sp. KN1 prokMSA_id:029604 AB038143 Ralstonia sp. P-10 prokMSA_id:027700 AB050020 Ralstonia sp. BA-0323 prokMSA_id:022497 AB051680 Ralstonia sp. HAB-01 prokMSA_id:021182 AB051681 Ralstonia sp. HAB-02 prokMSA_id:024387 AB051682 Ralstonia sp. HAB-08 prokMSA_id:031719 AB051683 Ralstonia sp. HAB-11 prokMSA_id:052220 AB051684 Ralstonia sp. HAB-18 prokMSA_id:096429 AB054960 Ralstonia sp. 1244a complete prokMSA_id:071212 AB054961 Ralstonia sp. 1263a complete prokMSA_id:027222 AB055427 Ralstonia sp. 1249 complete prokMSA_id:035778 AB074744 Beta S-St4-12C prokMSA_id:039990 AB074745 Beta S-St4-5A prokMSA_id:063069 AB088540 Ralstonia sp. HBL5 prokMSA_id:063067 AB088542 Ralstonia sp. HBL7 prokMSA_id:063063 AB088545 Ralstonia sp. LCH1 prokMSA_id:063056 AB088551 Ralstonia sp. LCL3 prokMSA_id:085415 AB109753 Ralstonia paucula prokMSA_id:083846 AB109778 Ralstonia basilensis strain:KF708 prokMSA_id:097344 AB121220 Ralstonia sp. 1243 prokMSA_id:095536 AB121221 Ralstonia sp. 1245 prokMSA_id:098665 AB121222 Ralstonia sp. 1246a prokMSA_id:097465 AB121223 Ralstonia sp. 1247 prokMSA_id:098039 AB121224 Ralstonia sp. 1250 prokMSA_id:097064 AB121225 Ralstonia sp. 1259 prokMSA_id:096923 AB121226 Ralstonia sp. 1265a prokMSA_id:096723 AB121227 Ralstonia sp. 1266 prokMSA_id:097047 AB121228 Ralstonia sp. 1278a prokMSA_id:007400 AF027407 Ralstonia eutropha str. JS705. prokMSA_id:007385 AF067657 str. JHH 1448. prokMSA_id:007397 AF067833 Ralstonia TFD41 str. TFD41. prokMSA_id:007392 AF085226 Ralstonia paucula LMG 3413. prokMSA_id:007401 AF098288 Ralstonia FRA01 str. FRA01. prokMSA_id:017535 AF139729 Ralstonia sp. JMP134 small subunit complete prokMSA_id:034687 AF155567 Ralstonia oxalatica complete prokMSA_id:007381 AF184930 str. TFD43. prokMSA_id:007388 AF191737 Cupriavidus necator ATCC 43291. prokMSA_id:020728 AF239160 Ralstonia sp. PHS1 prokMSA_id:041961 AF251026 Ralstonia sp. LD35 prokMSA_id:020648 AF300324 Ralstonia taiwanensis strain LMG 19424 prokMSA_id:047468 AF300325 Ralstonia taiwanensis strain LMG 19425 prokMSA_id:040792 AF301897 Ralstonia sp. U2 prokMSA_id:053615 AF312020 Ralstonia campinensis strain WS2 prokMSA_id:070450 AF312021 Ralstonia basilensis strain ER121 prokMSA_id:073500 AF312022 Ralstonia basilensis strain DSM 11853 prokMSA_id:022192 AF368758 Ralstonia sp. S23 prokMSA_id:025490 AF369869 Ralstonia sp. DB3 prokMSA_id:052222 AF388905 Ralstonia sp. clone GOBB3-CL108 prokMSA_id:046742 AF441308 PAH-contaminated sludge PB-13 prokMSA_id:046094 AF441309 PAH-contaminated sludge PB-14 prokMSA_id:044597 AF441313 PAH-contaminated sludge PB-18 prokMSA_id:032559 AF469365 clone 33-PA7B99 prokMSA_id:068773 AF484966 Ralstonia taiwanensis strain BHU1 prokMSA_id:067342 AF494541 Ralstonia sp. BPC3 prokMSA_id:067232 AF495865 Ralstonia paucula prokMSA_id:066059 AF500583 Ralstonia sp. AU3313 prokMSA_id:066058 AF500584 Ralstonia sp. AU3801 prokMSA_id:056519 AF500585 Ralstonia sp. AU0626 prokMSA_id:066050 AF500586 Ralstonia sp. AU1618 prokMSA_id:056268 AF500587 Ralstonia sp. AU3369 prokMSA_id:065509 AF501357 Ralstonia eutropha strain HAMBI2384 prokMSA_id:065502 AF501365 Ralstonia eutropha strain HAMBI2380 prokMSA_id:062981 AF526928 Ralstonia sp. clone T5-19 rrn prokMSA_id:062980 AF526929 Ralstonia sp. clone T5-13 rrn prokMSA_id:062970 AF526940 Ralstonia sp. clone 81-22 rrn prokMSA_id:061812 AF529352 beta clone CLs76 prokMSA_id:035550 AH010744 Ralstonia sp. DB3 and genes prokMSA_id:007396 AJ002302 Ralstonia basilensis str. RK1. prokMSA_id:007398 AJ011503 Ralstonia sp. str. BKME-6. prokMSA_id:070917 AJ306571 Ralstonia gilardii isolate 009\817 prokMSA_id:073191 AJ313021 Ralstonia sp. MN 43 isolate MN 43 prokMSA_id:025026 AY005039 Burkholderia sp. oral strain C37KA prokMSA_id:072179 AY040349 Ralstonia campinensis strain LMG 20568 prokMSA_id:072788 AY040355 Ralstonia campinensis strain LMG 20576 prokMSA_id:071428 AY040358 Ralstonia campinensis strain LMG 20579 prokMSA_id:056669 AY043381 Ralstonia sp. AU626 prokMSA_id:050666 AY047217 Ralstonia basilensis prokMSA_id:086697 AY177368 Ralstonia sp. 50 prokMSA_id:085683 AY221074 clone CCMC0 prokMSA_id:092814 AY238507 Ralstonia sp. 80 prokMSA_id:088067 AY303977 Ralstonia taiwanensis strain MS1 prokMSA_id:091873 AY345520 clone W1A-F07 prokMSA_id:018591 D87106 Alcaligenes eutrophus prokMSA_id:007386 D87999 Ralstonia eutropha DSM 2839. prokMSA_id:029866 D88000 Ralstonia eutropha prokMSA_id:007387 D88001 Ralstonia sp. str. CT14. prokMSA_id:030616 D88002 Ralstonia eutropha prokMSA_id:027787 D88003 Ralstonia eutropha prokMSA_id:024225 D88004 Ralstonia eutropha prokMSA_id:007399 D88009 Ralstonia sp. str. CT12. prokMSA_id:052615 E34476 and method detecting KB1 strain by using in the prokMSA_id:007395 L31650 Alcaligenes sp. str. M91-3. prokMSA_id:007380 M32021 Ralstonia eutropha str. 335 R.Y. Stanier ATCC 17697 . prokMSA_id:007384 X97093 str. TM24. prokMSA_id:007391 Y10824 Ralstonia eutropha str. CH34. prokMSA_id:007382 Y10825 Ralstonia eutropha str. DS185. 2.28.2.13.010 OTU 1 seq prokMSA_id:027342 AF445096 clone Tc26 2.28.2.13.011 OTU 1 seq prokMSA_id:058764 AJ508607 Ralstonia sp. MBRG 4.13 isolate MBRG 4.13 2.28.2.13.012 OTU 1 seq prokMSA_id:033253 AF361022 Ralstonia sp. NAH8 2.28.2.13.013 OTU 1 seq prokMSA_id:036350 AJ252688 Rhizosphere soil clone RSC-II-60 2.28.2.13.014 OTU 1 seq prokMSA_id:038889 AF445098 clone Tc29 2.28.2.13.015 OTU 1 seq prokMSA_id:044156 AB066228 Ralstonia sp. NI1 2.28.2.13.016 OTU 2 seqs prokMSA_id:060601 AF407697 clone G06 prokMSA_id:060579 AF407722 clone B44 2.28.2.13.017 OTU 1 seq prokMSA_id:060787 AF491668 beta clone SFD1-33 2.28.2.13.018 OTU 1 seq prokMSA_id:063266 AF523954 clone FW119 2.28.2.13.019 OTU 1 seq prokMSA_id:065548 AY095417 yard-trimming-compost clone S-50 2.28.2.13.020 OTU 1 seq prokMSA_id:065583 AY095377 yard-trimming-compost clone S-3 2.28.2.13.021 OTU 2 seqs prokMSA_id:076540 AF431285 beta clone S36.51SM prokMSA_id:077069 AY150869 beta clone glen99_30 2.28.2.13.022 OTU 2 seqs prokMSA_id:082219 AY193913 clone SB1 prokMSA_id:081590 AY193914 clone SB2 2.28.2.13.023 OTU 2 seqs prokMSA_id:082483 AY242699 soil clone Tc119-F01 prokMSA_id:085125 AY242700 soil clone Tc133-98 2.28.2.13.024 OTU 1 seq prokMSA_id:082952 AY242698 soil clone Tc131-42 2.28.2.13.025 OTU 1 seq prokMSA_id:097153 AJ575688 beta clone SW14 2.28.2.13.999 poor quality 78 seqs prokMSA_id:026883 AB011288 Burkholderia sp. prokMSA_id:043343 AB013408 Ralstonia sp. MB6 prokMSA_id:024101 AB054958 Ralstonia sp. 1094 prokMSA_id:028371 AB054959 Ralstonia sp. 1183 prokMSA_id:025371 AB054964 Ralstonia sp. 1101 prokMSA_id:046320 AB066241 Ralstonia sp. PJ531 prokMSA_id:063170 AB088433 Ralstonia sp. HBH3 prokMSA_id:063072 AB088537 Ralstonia sp. HBH2 prokMSA_id:063070 AB088538 Ralstonia sp. HBL1 prokMSA_id:063058 AB088546 Ralstonia sp. LCH2 prokMSA_id:063057 AB088550 Ralstonia sp. LCL2 prokMSA_id:032180 AF010077 prokMSA_id:007390 AF076645 Ralstonia gilardii LMG 5886 . prokMSA_id:020344 AF092087 Ralstonia eutropha prokMSA_id:043866 AF107075 Ralstonia eutropha prokMSA_id:020063 AF176846 24-D-degrading 017 prokMSA_id:037638 AF176847 24-D-degrading 018 prokMSA_id:030432 AF176851 24-D-degrading 023 prokMSA_id:017302 AF176852 24-D-degrading 026 prokMSA_id:020541 AF176858 24-D-degrading 033 prokMSA_id:032685 AF176861 24-D-degrading 712 prokMSA_id:025080 AF176863 24-D-degrading 1172 prokMSA_id:029947 AF176864 24-D-degrading 9112 prokMSA_id:033513 AF176865 24-D-degrading 9157 prokMSA_id:029518 AF176866 24-D-degrading 9226.2 prokMSA_id:036414 AF210815 Ralstonia sp. TAFB-tol-1 prokMSA_id:033091 AF229853 Ralstonia sp. CS2 prokMSA_id:033281 AF250409 Ralstonia sp. D13 prokMSA_id:036020 AF250410 Ralstonia sp. D16 prokMSA_id:030773 AF369868 Ralstonia sp. DB3 prokMSA_id:017621 AF390948 clone TFBME9 prokMSA_id:075541 AF431231 beta clone C16.31WL prokMSA_id:074923 AF431241 beta clone C17.27WL prokMSA_id:076224 AF431255 beta clone N27.20SM prokMSA_id:076684 AF432755 clone S36.60SM prokMSA_id:021840 AF441310 PAH-contaminated sludge PB-15 prokMSA_id:051517 AF441311 PAH-contaminated sludge PB-16 prokMSA_id:044190 AF441312 PAH-contaminated sludge PB-17 prokMSA_id:020889 AF441314 PAH-contaminated sludge PB-19 prokMSA_id:026039 AF441315 PAH-contaminated sludge PB-20 prokMSA_id:073405 AF452133 Ralstonia campinensis prokMSA_id:050441 AF469368 clone 33-FL54B99 prokMSA_id:086691 AF499888 clone ABLC15 prokMSA_id:040107 AJ005652 beta isolate Clo 78 prokMSA_id:020237 AJ009715 beta isolate K8 prokMSA_id:074075 AJ286742 Ralstonia sp. isolate DGGE band S prokMSA_id:050359 AJ413607 beta isolate dtb80 prokMSA_id:061743 AJ416199 clone Sta1-49 prokMSA_id:030116 AJ421898 clone Alt9-K60 prokMSA_id:057089 AJ518450 clone Neu4P3-64 prokMSA_id:056856 AJ518749 clone Sai4P3-80 prokMSA_id:097272 AJ555437 clone SE2A prokMSA_id:016573 AY037580 soil clone S046 prokMSA_id:030283 AY037600 soil clone S073 prokMSA_id:037754 AY037621 soil clone S104 prokMSA_id:051633 AY039386 Earthworm burrow B3D3 prokMSA_id:016493 AY039391 Earthworm cast NC9 prokMSA_id:071014 AY040363 Ralstonia basilensis prokMSA_id:056019 AY043783 beta clone SMW4.28WL prokMSA_id:077421 AY170454 Arthrobacter sp. AQ7 prokMSA_id:084066 AY242702 soil clone Tc130-33 prokMSA_id:085033 AY256615 DGGE band A2-15 prokMSA_id:084381 AY267495 Ralstonia sp. 3CB3E2 prokMSA_id:085983 AY267496 Ralstonia sp. 3CB3L prokMSA_id:086682 AY267497 Ralstonia sp. 3CB3E prokMSA_id:086432 AY267498 Ralstonia sp. 3CB3C prokMSA_id:085250 AY267499 Ralstonia sp. 4CBBB prokMSA_id:082594 AY275489 Ralstonia sp. MSB2010 prokMSA_id:083516 AY275490 Ralstonia sp. MSB2080 prokMSA_id:086066 AY275491 Ralstonia sp. MSB2004 prokMSA_id:088589 AY289440 soil clone DS-19 prokMSA_id:090669 AY289441 soil clone DS-90 prokMSA_id:091558 AY345572 clone T7-M-A08 prokMSA_id:096973 AY395111 clone B25R prokMSA_id:096210 AY395285 VA-F-12 prokMSA_id:007393 L40413 Ralstonia eutropha str. 3CB-1. prokMSA_id:007394 U52349 Ralstonia eutropha str. B30P4. prokMSA_id:034338 U61284 Thermothrix thiopara 2.28.2.14 RAL.SOLANACEARUM_GROUP 208 seqs 2.28.2.14.1 PS.SYZYGII_SUBGROUP 48 seqs 2.28.2.14.1.001 OTU 24 seqs prokMSA_id:007408 AB021403 Ralstonia Pseudomonas syzygii ATCC 49543. prokMSA_id:040253 AB024608 Ralstonia solanacearum isolate:MAFF 301559 prokMSA_id:038402 AB024609 Ralstonia solanacearum isolate:MAFF 211271 prokMSA_id:057520 AB095535 Blood disease BananaE prokMSA_id:020552 AF356011 clone BA5 prokMSA_id:068971 AF356025 clone S53 prokMSA_id:025738 AF368757 Pseudomonas sp. 5E prokMSA_id:064267 AF453507 prokMSA_id:023650 AJ270259 Ralstonia thomasii strain RAL4 MC5 prokMSA_id:058388 AL646064 Ralstonia solanacearum GMI1000 chromosome complete ; segment 8/19 prokMSA_id:058391 AL646072 Ralstonia solanacearum GMI1000 chromosome complete ; segment 16/19 prokMSA_id:058390 AL646073 Ralstonia solanacearum GMI1000 chromosome complete ; segment 17/19 prokMSA_id:058389 AL646081 Ralstonia solanacearum GMI1000 megaplasmid complete ; segment 6/11 prokMSA_id:072714 AY005032 Burkholderia sp. oral clone AK168 prokMSA_id:063606 AY043380 Ralstonia sp. AU378 prokMSA_id:061100 NC_003295 Ralstonia solanacearum complete genome prokMSA_id:050403 NC_003296 Ralstonia solanacearum megaplasmid complete prokMSA_id:007404 U28232 Ralstonia solanacearum str. R780. prokMSA_id:007405 U28233 Ralstonia solanacearum str. R142. prokMSA_id:007412 U28234 str. R506. prokMSA_id:007411 U28235 str. R233. prokMSA_id:007410 U28236 str. R223. prokMSA_id:007407 U28237 Pseudomonas syzygii str. R001 . prokMSA_id:007406 U28238 Pseudomonas syzygii str. R058. 2.28.2.14.1.002 OTU 1 seq prokMSA_id:085936 AY274162 clone D46 2.28.2.14.1.003 OTU 1 seq prokMSA_id:090492 AF522999 Limnobacter sp. clone D-15 2.28.2.14.1.999 poor quality 22 seqs prokMSA_id:022604 AB054962 Pseudomonas sp. 1107 prokMSA_id:077078 AB075067 clone:KCRS12 prokMSA_id:075035 AB075070 clone:KCRS15 prokMSA_id:074931 AB075104 clone:KSRS3 prokMSA_id:076020 AB075112 clone:KSRS16 prokMSA_id:075976 AB075136 clone:TCRS3 prokMSA_id:076284 AB075147 clone:TCRS14 prokMSA_id:077073 AB075150 clone:TCRS19 prokMSA_id:025714 AF128734 soil C074 prokMSA_id:069007 AF364940 clone clL42b prokMSA_id:069066 AF466920 beta isolate DGGE band C18 prokMSA_id:067444 AF493294 clone pHS29 prokMSA_id:049653 AJ270252 Pseudomonas syzygii strain RAL10 prokMSA_id:044082 AJ270253 Pseudomonas syzygii strain RAL09 LMG6970 prokMSA_id:039406 AJ270254 Pseudomonas syzygii strain RAL11 LMG10662 prokMSA_id:029619 AJ270255 Pseudomonas syzygii strain RAL08 LMG6969 prokMSA_id:059241 AJ319842 SB-31-AG prokMSA_id:070934 AJ319858 SB-24-CS prokMSA_id:077397 AY138993 beta pBM16S85 prokMSA_id:095601 AY383556 Ralstonia solanacearum isolate EGY-MS2003 23S ; tRNA-Ala and tRNA-Ile genes complete ; and prokMSA_id:007403 X70346 Ralstonia solanacearum. prokMSA_id:007409 X70347 Pseudomonas syzygii. 2.28.2.14.2 RAL.PICKETTII_SUBGROUP 99 seqs 2.28.2.14.2.009 OTU 43 seqs prokMSA_id:007418 AB004790 Ralstonia pickettii str. MSP3. prokMSA_id:039540 AB045276 Ralstonia sp. APF11 prokMSA_id:016677 AF194401 Ralstonia pickettii kpa33f prokMSA_id:024261 AF280433 Ralstonia detusculanense prokMSA_id:044709 AF368759 Pseudomonas sp. MF254A prokMSA_id:038789 AF390082 Ralstonia sp. W-15 prokMSA_id:026889 AF396930 Pseudomonas sp. BUV1 prokMSA_id:072352 AF434171 Ralstonia sp. AV5BG prokMSA_id:089041 AF443572 clone O-F-8 prokMSA_id:033025 AF467977 Ralstonia pickettii prokMSA_id:064368 AF516908 Ralstonia sp. TRP10:4-2 prokMSA_id:064369 AF516909 Ralstonia sp. TRP10:1-1 prokMSA_id:062996 AF526914 Ralstonia pickettii strain 31v3 rrn prokMSA_id:025023 AH004177 Burkholderia pickettii ATCC 27511 Genomic 1347 nt 2 segments prokMSA_id:031873 AJ270260 Ralstonia pickettii strain RAL01 LMG 7160 prokMSA_id:076674 AJ318915 Ralstonia pickettii strain ED4 prokMSA_id:028848 AJ387867 oxSCC-14 prokMSA_id:088651 AJ567546 Ralstonia sp. clone MBMPE28 prokMSA_id:088581 AJ567569 Ralstonia sp. clone MBMPE66 prokMSA_id:018760 AY053492 AT425_EubE3 prokMSA_id:060854 AY135921 clone SG2-118 prokMSA_id:078927 AY177364 Ralstonia sp. 97 prokMSA_id:080418 AY191845 Ralstonia sp. 12B prokMSA_id:080620 AY191846 Ralstonia sp. 12D prokMSA_id:080279 AY191848 Ralstonia sp. 12F prokMSA_id:080444 AY191849 Ralstonia sp. 12I prokMSA_id:080002 AY191850 Ralstonia sp. 12J prokMSA_id:079746 AY191851 Ralstonia sp. 13A prokMSA_id:080825 AY191852 Ralstonia sp. 13H prokMSA_id:079864 AY191853 Ralstonia sp. 13I prokMSA_id:080489 AY191854 Ralstonia sp. 14C prokMSA_id:080952 AY191856 Ralstonia sp. 14I prokMSA_id:082456 AY216798 Ralstonia sp. Q3-8/14 prokMSA_id:088218 AY268176 Ralstonia pickettii strain 2000032023 prokMSA_id:090376 AY268177 Ralstonia pickettii strain 2002721592 prokMSA_id:089721 AY268178 Ralstonia pickettii strain 2002721591 prokMSA_id:088249 AY268179 Ralstonia pickettii strain 2000030791 prokMSA_id:089827 AY268180 Ralstonia pickettii strain 2000030635 prokMSA_id:090720 AY268181 Ralstonia sp. 1999043680 prokMSA_id:091538 AY345430 K2-21 prokMSA_id:007415 L37367 Ralstonia pickettii str. PKO1. prokMSA_id:007414 S55004 Ralstonia pickettii str. K-288 ATCC 27511. prokMSA_id:007417 X67042 Ralstonia pickettii str. K 550 ATCC 27512. 2.28.2.14.2.999 poor quality 56 seqs prokMSA_id:052542 AB013421 Beta MC3 prokMSA_id:020593 AB013428 Ralstonia sp. ML7 prokMSA_id:047681 AB013429 Ralstonia sp. ML10 prokMSA_id:041339 AB013438 Ralstonia sp. YL13 prokMSA_id:035233 AF018053 OS9F prokMSA_id:070394 AF018054 OS9E prokMSA_id:072456 AF018056 OSs73 prokMSA_id:070692 AF018057 OSs74 prokMSA_id:044234 AF018058 OSs77 prokMSA_id:072349 AF018059 OSs80 prokMSA_id:019026 AF018060 OSs82 prokMSA_id:073494 AF018061 OSs83 prokMSA_id:072383 AF018062 OSW10 prokMSA_id:048698 AF018063 OSW12 prokMSA_id:072730 AF018064 OSs75 prokMSA_id:073566 AF018065 OSs76 prokMSA_id:052509 AF018066 OSs78 prokMSA_id:069948 AF018067 OSW1 prokMSA_id:022493 AF141431 beta clone CR-PA50 prokMSA_id:034769 AF141456 beta clone CRE-FL33 prokMSA_id:050145 AF250412 Ralstonia sp. D36 prokMSA_id:068131 AF365605 clone BT60MF7BB2 prokMSA_id:054053 AF417500 isolate DGGE band 4V366 prokMSA_id:028248 AF417501 isolate DGGE band 5V168 prokMSA_id:068764 AF479337 Glacial ice G500K-6 prokMSA_id:068797 AF481831 Ralstonia sp. TRP5:1-1 prokMSA_id:068794 AF481833 Ralstonia sp. O-TRP9:4-2 prokMSA_id:067463 AF493261 clone pHS9 prokMSA_id:067459 AF493265 clone pHS49 prokMSA_id:067457 AF493272 clone pHS58 prokMSA_id:067452 AF493285 clone pHS15 prokMSA_id:067450 AF493286 clone pHS16 prokMSA_id:059431 AF540835 clone DP10u23 prokMSA_id:056581 AF540836 clone DP11u29 prokMSA_id:033018 AJ011148 3-24 clone 3-24 prokMSA_id:034694 AJ249848 Ralstonia pickettii strain RAL03 LMG7015 prokMSA_id:021547 AJ270261 Ralstonia pickettii strain PSE058 UZG S89 0 prokMSA_id:035590 AJ270262 Ralstonia pickettii strain PSE056 LMG 7005 prokMSA_id:038378 AJ270263 Ralstonia pickettii strain PSE060 UZG 99 034 prokMSA_id:041125 AJ270264 Ralstonia pickettii strain RAL2 LMG 7014 prokMSA_id:052581 AJ270265 Ralstonia pickettii strain PSE055 ATCC 27512 prokMSA_id:027300 AJ270266 Ralstonia pickettii strain RAL12 UZG 99 034 prokMSA_id:027997 AY006587 rumen prokMSA_id:047085 AY037581 soil clone S047 prokMSA_id:040572 AY072880 Ralstonia pickettii strain 61A6 prokMSA_id:063048 AY122295 Denitrifying GA1 prokMSA_id:063041 AY122304 Denitrifying HA1 prokMSA_id:055651 AY122312 Denitrifying HA2 prokMSA_id:080607 AY191855 Ralstonia sp. 14H prokMSA_id:080405 AY193258 clone Bol86 prokMSA_id:007419 L13140 str. B708. prokMSA_id:041653 S55018 Burkholderia pickettii ATCC 27511 Genomic 377 nt segment 2 of 2 prokMSA_id:007421 U12227 str. B0711. prokMSA_id:007416 X70348 Ralstonia pickettii str. E1625. prokMSA_id:007413 X70349 Ralstonia pickettii str. K-288 NCTC 11149 . prokMSA_id:007420 X91294 clone G42. 2.28.2.14.3 RAL.SOLAN4_SUBGROUP 33 seqs 2.28.2.14.3.001 OTU 2 seqs prokMSA_id:007432 U16144 Ralstonia solanacearum str. H1. prokMSA_id:070664 U16144 Ralstonia solanacearum 2.28.2.14.3.002 OTU 21 seqs prokMSA_id:050898 AB024604 Ralstonia solanacearum isolate:MAFF 211266 prokMSA_id:039252 AB024605 Ralstonia solanacearum isolate:MAFF 301527 prokMSA_id:043651 AB024606 Ralstonia solanacearum isolate:MAFF 301522 prokMSA_id:033270 AB024607 Ralstonia solanacearum isolate:MAFF 301520 prokMSA_id:027013 AF207897 Ralstonia solanacearum strain MAFF211266 prokMSA_id:067749 AF488779 Ralstonia sp. AU2944 prokMSA_id:037841 AJ270256 Ralstonia thomasii strain RAL13 LBV371 prokMSA_id:029028 AJ270257 Ralstonia thomasii strain LBV407 UCL310 prokMSA_id:048140 AJ270258 Ralstonia thomasii strain LMG6866 prokMSA_id:057720 AJ507103 Ralstonia sp. CCUG 46389 strain CCUG 46389 prokMSA_id:079758 AJ539233 Ralstonia insidiosa strain CCUG 46388 prokMSA_id:094336 AJ583177 beta- clone S15D-MN99 prokMSA_id:007424 U27983 Ralstonia solanacearum ACH 0732. prokMSA_id:007427 U27984 Ralstonia solanacearum str. R288. prokMSA_id:007428 U27985 Ralstonia solanacearum ACH 092. prokMSA_id:007429 U27986 Ralstonia solanacearum ACH 0171. prokMSA_id:007430 U27987 Ralstonia solanacearum str. R791. prokMSA_id:007431 U28220 Ralstonia solanacearum CIP 365. prokMSA_id:007426 U76101 Ralstonia arc38. prokMSA_id:007423 X67040 Ralstonia solanacearum ACH 092. prokMSA_id:007422 X67041 Ralstonia solanacearum ACH 0171. 2.28.2.14.3.003 OTU 1 seq prokMSA_id:007425 Z93984 clone T34. 2.28.2.14.3.004 OTU 1 seq prokMSA_id:016927 AF259597 Ralstonia CtaxAus-5 2.28.2.14.3.005 OTU 1 seq prokMSA_id:038016 AF418961 clone HTG2 2.28.2.14.3.006 OTU 1 seq prokMSA_id:095147 AJ583178 beta- clone S15D-MN15 2.28.2.14.3.007 OTU 1 seq prokMSA_id:095469 AJ575690 beta clone NE70 2.28.2.14.3.999 poor quality 5 seqs prokMSA_id:076719 AF431283 beta clone S36.38SM prokMSA_id:056036 AF493270 clone pHS55 prokMSA_id:078505 AY172965 Ralstonia sp. BT-17 prokMSA_id:081425 AY187442 clone SA168 prokMSA_id:007433 L13138 str. B704. 2.28.2.14.4 RAL.SOLANA_SUBGROUP 28 seqs 2.28.2.14.4.001 OTU 20 seqs prokMSA_id:019239 AF207891 Ralstonia solanacearum strain CFBP1036 prokMSA_id:047343 AF207892 Ralstonia solanacearum strain CFBP712 prokMSA_id:044713 AF207893 Ralstonia solanacearum strain NCPPB1018 prokMSA_id:048001 AF207894 Ralstonia solanacearum strain CFBP2146 prokMSA_id:042763 AF207895 Ralstonia solanacearum strain CFBP734 prokMSA_id:042127 AF207896 Ralstonia solanacearum strain NCPPB342 prokMSA_id:081066 AY216796 Ralstonia solanacearum prokMSA_id:007434 U28221 Ralstonia solanacearum str. PDDCC1727; K60 ATCC 1696 . prokMSA_id:007438 U28222 Ralstonia solanacearum CIP 210. prokMSA_id:007436 U28223 Ralstonia solanacearum str. R207. prokMSA_id:007445 U28224 Ralstonia solanacearum ACH 0158. prokMSA_id:007435 U28225 Ralstonia solanacearum str. Br150. prokMSA_id:007444 U28226 Ralstonia solanacearum CIP 238. prokMSA_id:007439 U28227 Ralstonia solanacearum CIP 10. prokMSA_id:007450 U28228 Ralstonia solanacearum str. R483. prokMSA_id:007443 U28229 Ralstonia solanacearum str. R634. prokMSA_id:007442 U28230 Ralstonia solanacearum str. R633. prokMSA_id:007437 U28231 Ralstonia solanacearum str. R639. prokMSA_id:007448 X67035 Ralstonia solanacearum ACH 0158. prokMSA_id:007449 X67036 Ralstonia solanacearum ATCC 11696 . 2.28.2.14.4.002 OTU 2 seqs prokMSA_id:041733 AH004176 Burkholderia solanacearum ATCC 10696 Genomic 1345 nt 2 segments prokMSA_id:007441 S55002 Ralstonia solanacearum ATCC 11696 . 2.28.2.14.4.999 poor quality 6 seqs prokMSA_id:045508 AF045171 Wineub76 small subunit prokMSA_id:066291 AF506045 Ralstonia sp. LCSAOTU20 prokMSA_id:025120 S55011 Burkholderia solanacearum ATCC 10696 Genomic 378 nt segment 2 of 2 prokMSA_id:007446 X70344 Ralstonia solanacearum. prokMSA_id:007447 X70345 Ralstonia solanacearum. prokMSA_id:007440 X70350 Ralstonia solanacearum. 2.28.3 GAMMA_SUBDIVISION 14330 seqs 2.28.3.1 HALORHODOSPIRA_GROUP 10 seqs 2.28.3.1.001 OTU 1 seq prokMSA_id:007457 X93474 Halorhodospira halophila str. BN 9624; 51/1. 2.28.3.1.002 OTU 1 seq prokMSA_id:007455 X93484 Halorhodospira halophila str. BN 9630; 51/3. 2.28.3.1.003 OTU 1 seq prokMSA_id:007453 AF170783 clone QSSC9L-5. 2.28.3.1.004 OTU 1 seq prokMSA_id:007452 X93483 Halorhodospira halochloris str. BN 9851; 51/12. 2.28.3.1.005 OTU 2 seqs prokMSA_id:062637 AJ318525 Halorhodospira neutrophila strain SG3301 prokMSA_id:062638 AJ318526 Halorhodospira neutrophila strain SG3304 2.28.3.1.999 poor quality 4 seqs prokMSA_id:070828 AJ278688 Halorhodospira halophila isolate Ph-C1 prokMSA_id:007456 M26630 Halorhodospira halophila str. SL 1 DSM 244 . prokMSA_id:007454 M59152 Halorhodospira halochloris str. A ATCC 35916 . prokMSA_id:007451 X93477 Halorhodospira abdelmalekii str. BN 9840; 51/20 DSM 2110 . 2.28.3.2 ARHODOMONAS_AND_NITROCOCCUS_GROUP 112 seqs 2.28.3.2.002 OTU 1 seq prokMSA_id:007461 AF114783 Alkalispirillum mobilis. 2.28.3.2.003 OTU 1 seq prokMSA_id:007460 L35510 Nitrococcus mobilis ATCC 25380 . 2.28.3.2.004 OTU 1 seq prokMSA_id:007459 AF142886 clone EKHO-2. 2.28.3.2.005 OTU 1 seq prokMSA_id:023032 AF348707 gamma clone MPD-09 2.28.3.2.006 OTU 5 seqs prokMSA_id:056490 AF452601 gamma clone ML110J-20 prokMSA_id:063855 AF452603 gamma clone ML110J-5 prokMSA_id:055809 AF452607 gamma clone ML310M-42 prokMSA_id:079965 AF453543 gamma clone ML812M-17 prokMSA_id:062733 AF507823 gamma clone ML617.5J-3 2.28.3.2.007 OTU 1 seq prokMSA_id:028815 AJ252621 Agricultural soil clone SC-I-18 2.28.3.2.008 OTU 2 seqs prokMSA_id:058874 AF406554 Arsenite-oxidizing MLHE-1 prokMSA_id:046869 AJ404972 Alcalilimnicola halodurans isolate 34Alc 2.28.3.2.009 OTU 1 seq prokMSA_id:033648 AJ295652 KF-JG30-C25 2.28.3.2.011 OTU 10 seqs prokMSA_id:007463 AF153343 Nitrosococcus C-113 str. C-113. prokMSA_id:063090 AF509004 clone MB7 prokMSA_id:063088 AF509005 clone MB5 prokMSA_id:063087 AF509006 clone MB14 prokMSA_id:063089 AF509007 clone MB15 prokMSA_id:071272 AF509008 clone CC12 prokMSA_id:063085 AF509009 clone MB6 prokMSA_id:063091 AF509010 clone MB8 prokMSA_id:070220 AF509012 clone CC16 prokMSA_id:074253 AF509013 clone CC17 2.28.3.2.012 OTU 1 seq prokMSA_id:040387 AF339744 gamma V3 2.28.3.2.013 OTU 1 seq prokMSA_id:041406 AF424161 gamma MERTZ_21CM_15 2.28.3.2.015 OTU 2 seqs prokMSA_id:054801 AF424060 gamma MERTZ_2CM_24 prokMSA_id:049121 AF424069 gamma MERTZ_2CM_54 2.28.3.2.016 OTU 1 seq prokMSA_id:052546 AF391977 thermal soil clone YNPFFP50 2.28.3.2.018 OTU 16 seqs prokMSA_id:063857 AF452602 gamma clone ML110J-38 prokMSA_id:063852 AF452608 gamma clone ML320J-31 prokMSA_id:063849 AF452609 gamma clone ML320J-36 prokMSA_id:080413 AF453540 gamma clone ML615J-15 prokMSA_id:079794 AF453545 gamma clone ML812M-2 prokMSA_id:056188 AF507810 gamma clone ML617.5J-11 prokMSA_id:062742 AF507811 gamma clone ML602J-16 prokMSA_id:062741 AF507812 gamma clone ML623J-10 prokMSA_id:062738 AF507813 gamma clone ML602J-41 prokMSA_id:062736 AF507815 gamma clone ML617.5J-41 prokMSA_id:062735 AF507816 gamma clone ML623J-56 prokMSA_id:062740 AF507818 gamma clone ML602J-47 prokMSA_id:055958 AF507819 gamma clone ML602J-28 prokMSA_id:062492 AF513945 Ectothiorhodospiraceae clone LA1-A16 prokMSA_id:062491 AF513946 Ectothiorhodospiraceae clone LA7-A4N prokMSA_id:062495 AF513947 Ectothiorhodospiraceae clone LA7-B9 2.28.3.2.019 OTU 1 seq prokMSA_id:062589 AJ504540 isolate P1CN85 2.28.3.2.020 OTU 1 seq prokMSA_id:063328 AF523887 clone RCP1-48 2.28.3.2.021 OTU 2 seqs prokMSA_id:063854 AF452604 gamma clone ML110M-3 prokMSA_id:063853 AF452605 gamma clone ML1218J-16 2.28.3.2.022 OTU 1 seq prokMSA_id:064145 AF477873 clone 17-UMH 22% pond 2.28.3.2.023 OTU 1 seq prokMSA_id:064148 AF477872 clone 14-UMH 22% pond 2.28.3.2.024 OTU 1 seq prokMSA_id:068677 AJ438185 1118 bp 2.28.3.2.025 OTU 1 seq prokMSA_id:076879 AJ532724 clone JG34-KF-231 2.28.3.2.026 OTU 1 seq prokMSA_id:077185 AY150891 gamma clone GR26 2.28.3.2.027 OTU 1 seq prokMSA_id:083366 AY226290 clone DBBB-38 2.28.3.2.028 OTU 1 seq prokMSA_id:085715 AY226281 gamma clone DBBB-116 2.28.3.2.029 OTU 1 seq prokMSA_id:086603 AY221083 clone CCU8 2.28.3.2.999 poor quality 56 seqs prokMSA_id:075191 AB075055 clone:KCS12 prokMSA_id:032629 AF315424 temperate forest soil C6062 prokMSA_id:045328 AF332297 clone T26-34 prokMSA_id:022570 AF332324 clone T26-28 prokMSA_id:046661 AF358008 clone LO13.16 prokMSA_id:048428 AF428839 clone CR98-24-33 prokMSA_id:063846 AF452610 gamma clone ML513M-15 prokMSA_id:079870 AF453546 gamma clone ML812M-22 prokMSA_id:080114 AF453547 gamma clone ML812M-24 prokMSA_id:079667 AF453548 gamma clone ML812M-3 prokMSA_id:064168 AF477843 prokaryote isolate DGGE Band 2n-UIB 22% pond prokMSA_id:064170 AF477844 prokaryote isolate DGGE Band 5-UIB 22% pond prokMSA_id:064167 AF477845 prokaryote isolate DGGE Band 6-UIB 22% pond prokMSA_id:064165 AF477847 prokaryote isolate DGGE Band 13-UIB 22% pond prokMSA_id:064158 AF477856 clone 17-UMH 8% pond prokMSA_id:064146 AF477871 clone 7-PML 22% pond prokMSA_id:067107 AF499349 clone JCL9-61 prokMSA_id:066320 AF506998 Br-z11 prokMSA_id:065818 AF507514 soil clone S0147 prokMSA_id:065792 AF507544 soil clone S0192 prokMSA_id:062737 AF507814 gamma clone ML602J-7 prokMSA_id:062734 AF507817 gamma clone ML602J-21 prokMSA_id:072119 AF509011 clone CC18 prokMSA_id:070108 AF509014 clone CC13 prokMSA_id:070575 AF509015 clone CC14 prokMSA_id:073156 AJ400516 clone Hb1-K114 prokMSA_id:019649 AJ421109 clone C10-K48 prokMSA_id:070608 AJ421118 clone C11-K16 prokMSA_id:038839 AJ421204 clone C3-K23 prokMSA_id:071117 AJ421211 clone C4-K15 prokMSA_id:044533 AJ421212 clone C4-K13 prokMSA_id:021225 AJ421216 clone C5-K2 prokMSA_id:027949 AJ431277 clone 1_22 prokMSA_id:032382 AJ431306 clone 2_1 prokMSA_id:032688 AJ437466 clone 2_1_1 prokMSA_id:051861 AJ437467 clone 2_1_15 prokMSA_id:022011 AJ437468 clone 2_1_17 prokMSA_id:018908 AJ437469 clone 2_1_2 prokMSA_id:032036 AJ437471 clone 2_1_22 prokMSA_id:045519 AJ437472 clone 2_1_23 prokMSA_id:048272 AJ437474 clone 2_1_3 prokMSA_id:022420 AJ437475 clone 2_1_4 prokMSA_id:023524 AJ437476 clone 2_1_5 prokMSA_id:066155 AJ487530 gamma clone NCh21-AT12 prokMSA_id:055684 AJ493374 clone m2-1a prokMSA_id:063897 AJ493380 clone m4-3 prokMSA_id:055530 AJ493384 clone m5-3 prokMSA_id:089806 AJ568004 gamma isolate DGGE-21 prokMSA_id:088188 AJ568010 gamma isolate DGGE-32 prokMSA_id:037540 AY072258 C6060 prokMSA_id:057800 AY098901 clone SBRC_3 prokMSA_id:083407 AY221058 clone CCM23a prokMSA_id:088093 AY311819 Dpcom121 prokMSA_id:096508 AY395108 alpha clone B21R prokMSA_id:007458 M26631 Arhodomonas aquaeolei str. HA-1 ATCC 49307 . prokMSA_id:007462 X97090 str. TM190. 2.28.3.3 ECTOTHIORHODOSPIRA_GROUP 105 seqs 2.28.3.3.001 OTU 1 seq prokMSA_id:007473 X93482 Ectothiorhodospira marismortui str. BN 9410; Oren EG-1 DSM 4180 2.28.3.3.002 OTU 1 seq prokMSA_id:007471 X93476 Ectothiorhodospira marina str. BN 9914; Matheron BA 1010 DSM 241 2.28.3.3.003 OTU 2 seqs prokMSA_id:007469 AF142874 clone BURTON-56. prokMSA_id:021294 AF424140 gamma MERTZ_0CM_117 2.28.3.3.004 OTU 1 seq prokMSA_id:007468 X93478 Ectothiorhodospira vacuolata str. BN 9512; beta1 DSM 2111 . 2.28.3.3.006 OTU 4 seqs prokMSA_id:007465 AF084511 Ectothiorhodospira 'Bogoria Red' str. Bogoria Red. prokMSA_id:032582 AF384206 Ectothiorhodospira sp. 'Bogoria Red' strain RM1 prokMSA_id:028189 AF384207 Ectothiorhodospira sp. 'Bogoria Red' strain RB1 prokMSA_id:007464 X93475 Ectothiorhodospira haloalkaliphila str. BN 9902; C. 2.28.3.3.007 OTU 1 seq prokMSA_id:017330 AF424167 gamma MERTZ_21CM_152 2.28.3.3.008 OTU 1 seq prokMSA_id:019608 AF333526 actinobacterium clone R84 2.28.3.3.009 OTU 6 seqs prokMSA_id:049286 AB054139 HOC5 prokMSA_id:049861 AB054170 HOC36 prokMSA_id:052080 AB054172 HOC38 prokMSA_id:033232 AB054174 HOC40 prokMSA_id:021103 AB054181 HOC47 prokMSA_id:020571 AB054183 HOC49 2.28.3.3.010 OTU 1 seq prokMSA_id:020938 AF465652 gamma YNPRH65B 2.28.3.3.011 OTU 1 seq prokMSA_id:022774 AF424138 gamma MERTZ_0CM_102 2.28.3.3.012 OTU 1 seq prokMSA_id:058992 AY079010 Thialkalivibrio nitratreducens 2.28.3.3.013 OTU 2 seqs prokMSA_id:030803 AB054162 HOC28 prokMSA_id:047851 AB054184 HOC50 2.28.3.3.015 OTU 2 seqs prokMSA_id:033440 AJ278687 Ectothiorhodospira shaposhnikovi isolate Ph-C2 prokMSA_id:007467 X93480 Ectothiorhodospira shaposhnikovii str. BN 9912; Truper 8115 DSM 2.28.3.3.016 OTU 1 seq prokMSA_id:058383 AF361095 clone SBRT185 2.28.3.3.017 OTU 1 seq prokMSA_id:058382 AF361096 clone SBRH10 2.28.3.3.018 OTU 1 seq prokMSA_id:070681 AJ006530 Thiorhodospira sibirica 2.28.3.3.019 OTU 1 seq prokMSA_id:039921 AF424156 gamma MERTZ_0CM_357 2.28.3.3.020 OTU 3 seqs prokMSA_id:054932 AB054167 HOC33 prokMSA_id:040999 AB054171 HOC37 prokMSA_id:046213 AB054180 HOC46 2.28.3.3.021 OTU 4 seqs prokMSA_id:079902 AF453541 gamma clone ML615J-17 prokMSA_id:080652 AF453542 gamma clone ML615J-6 prokMSA_id:062739 AF507820 gamma clone ML623J-18 prokMSA_id:048663 AY079149 Thialkalivibrio sp. ALMg 2 2.28.3.3.022 OTU 1 seq prokMSA_id:054886 AF424162 gamma MERTZ_21CM_39 2.28.3.3.023 OTU 1 seq prokMSA_id:059791 AY133399 clone OB3_96 2.28.3.3.024 OTU 1 seq prokMSA_id:060168 AJ347044 clone TK38 2.28.3.3.025 OTU 1 seq prokMSA_id:060643 AF406529 gamma clone AEGEAN_165 2.28.3.3.026 OTU 1 seq prokMSA_id:065571 AY095392 yard-trimming-compost clone S-20 2.28.3.3.027 OTU 1 seq prokMSA_id:069845 AF126546 Thioalcalovibrio versutus 2.28.3.3.028 OTU 1 seq prokMSA_id:070993 AF151432 ARh1 2.28.3.3.029 OTU 1 seq prokMSA_id:071608 AF126547 Thioalcalovibrio nitratus 2.28.3.3.030 OTU 1 seq prokMSA_id:077999 AJ514448 clone AS1o9 2.28.3.3.031 OTU 1 seq prokMSA_id:078477 AJ536881 clone JG30-KF-AS32 2.28.3.3.032 OTU 1 seq prokMSA_id:078921 AJ536882 clone JG30-KF-CM35 2.28.3.3.033 OTU 1 seq prokMSA_id:083068 AY221036 clone CCD24 2.28.3.3.034 OTU 1 seq prokMSA_id:089646 AY298904 Ectothiorhodosinus mongolicum strain M9 2.28.3.3.035 OTU 1 seq prokMSA_id:090616 AJ567603 Ectothiorhodospiraceae clone MBAE54 2.28.3.3.036 OTU 1 seq prokMSA_id:093813 AY360060 Thialkalivibrio thiocyanodenitrificans strain ARhD 2.28.3.3.037 OTU 1 seq prokMSA_id:094044 AJ581596 gamma clone KCM-B-83 2.28.3.3.038 OTU 1 seq prokMSA_id:095370 AY375056 clone B165 2.28.3.3.999 poor quality 53 seqs prokMSA_id:044786 AB023597 NIC002 prokMSA_id:034324 AB023600 NIC005 prokMSA_id:071046 AB049921 sludge v9-2 prokMSA_id:064031 AB087339 clone:F33 prokMSA_id:028282 AF186433 sponge symbiont PAUC42 prokMSA_id:017896 AF281107 sp. sbr-gs17 prokMSA_id:039769 AF281108 sp. sbr-gs18 prokMSA_id:024407 AF281112 sp. sbr-gs22 prokMSA_id:024889 AF281117 sp. sbr-gs27 prokMSA_id:073581 AF302081 Thioalkalivibrio sp. ARh 2 prokMSA_id:071169 AF329083 Thioalkalivibrio jannaschii prokMSA_id:054530 AF332286 clone C12-40 prokMSA_id:068126 AF365612 clone BT60MF7BD2 prokMSA_id:068018 AF365735 clone BT60DS4BC10 prokMSA_id:068572 AF486704 clone E5-46-HS3I-223 prokMSA_id:068570 AF486705 clone E5-46-HS3I-224 prokMSA_id:068565 AF486709 clone E5-46-HS3I-228 prokMSA_id:056465 AF486722 clone E5-46-HS3I-241 prokMSA_id:068557 AF486725 clone E5-46-HS3I-244 prokMSA_id:068555 AF486726 clone E5-46-HS3I-245 prokMSA_id:068553 AF486729 clone E5-46-HS3I-248 prokMSA_id:068547 AF486735 clone E5-46-HS3I-254 prokMSA_id:068545 AF486737 clone E5-46-HS3I-256 prokMSA_id:068534 AF486748 clone E5-46-HS3I-268 prokMSA_id:068532 AF486751 clone E5-46-HS3I-271 prokMSA_id:068524 AF486759 clone E5-46-HS3I-279 prokMSA_id:068507 AF486775 clone E5-46-HS3I-295 prokMSA_id:068505 AF486782 clone E5-46-HS3I-302 prokMSA_id:058146 AF544066 gamma DGGE gel band M5-1 prokMSA_id:057394 AJ517899 clone E8.3 prokMSA_id:064967 AY095630 gamma OS3.5K-18 prokMSA_id:057793 AY098905 clone SBRC_20 prokMSA_id:057794 AY098906 clone SBRC_8 prokMSA_id:069246 AY144247 gamma clone LTUG02556 prokMSA_id:075192 AY157108 gamma isolate HS-35 prokMSA_id:075602 AY157111 gamma isolate HS-26 prokMSA_id:076584 AY157114 gamma isolate HS-36 prokMSA_id:083171 AY172146 Candidatus Competibacter phosphatis clone SBRT1 ; -23S intergenic spacer region complete ; and 23S prokMSA_id:084090 AY172148 Candidatus Competibacter phosphatis clone SBRT40 ; -23S intergenic spacer region complete ; and 23S prokMSA_id:085636 AY172149 Candidatus Competibacter phosphatis clone SBRT35 ; -23S intergenic spacer region complete ; and 23S prokMSA_id:084592 AY172150 Candidatus Competibacter phosphatis clone SBRT50 ; -23S intergenic spacer region complete ; and 23S prokMSA_id:085010 AY172151 Candidatus Competibacter phosphatis clone SBRT56 ; -23S intergenic spacer region complete ; and 23S prokMSA_id:086069 AY172152 Candidatus Competibacter phosphatis clone SBRT57 ; -23S intergenic spacer region complete ; and 23S prokMSA_id:086067 AY172154 Candidatus Competibacter phosphatis clone SBRT49 ; -23S intergenic spacer region complete ; and 23S prokMSA_id:084903 AY172158 Candidatus Competibacter phosphatis clone SBRT6 prokMSA_id:085945 AY172159 Candidatus Competibacter phosphatis clone SBRT70 prokMSA_id:096079 AY391694 soil clone M78 prokMSA_id:007466 M59151 Ectothiorhodospira shaposhnikovii DSM 243 . prokMSA_id:041354 U85140 gamma clone ACK-M9 prokMSA_id:007476 X52173 Sargasso Sea clone SAR 18. prokMSA_id:007472 X93479 Ectothiorhodospira haloalkaliphila str. BN 9903; 51/7. prokMSA_id:007474 X93481 Ectothiorhodospira mobilis str. BN 9911; Truper 8112 DSM 237 . prokMSA_id:007475 X97115 str. TM205. 2.28.3.4 THIOBACILLUS_GROUP 470 seqs 2.28.3.4.1 THB.FERROOXIDANS_SUBGROUP 121 seqs 2.28.3.4.1.001 OTU 41 seqs prokMSA_id:019750 AB039820 Thiobacillus ferrooxidans prokMSA_id:022453 AB080298 Acidithiobacillus sp. SH prokMSA_id:042143 AF213056 Thiobacillus sp. Fras2 prokMSA_id:038200 AF329204 Acidithiobacillus sp. SSP prokMSA_id:033408 AF329205 Acidithiobacillus ferrooxidans prokMSA_id:053544 AF362022 Acidithiobacillus ferrooxidans strain ATCC 19859 ; -23S intergenic spacer region complete ; and 23S prokMSA_id:045494 AF376017 Acidithiobacillus sp. KSC1 prokMSA_id:029934 AF376018 Acidithiobacillus sp. NO-8 prokMSA_id:018606 AF376019 Acidithiobacillus sp. NO-25 prokMSA_id:031580 AF376020 Acidithiobacillus sp. NO-37 prokMSA_id:043942 AF407401 clone RA13C21 prokMSA_id:029211 AF407402 clone RA13C22 prokMSA_id:019600 AF407404 clone RA13C4 prokMSA_id:038412 AF407410 clone RB13C4 prokMSA_id:042996 AF460987 Acidithiobacillus ferrooxidans P6-2 prokMSA_id:079379 AF465604 Acidithiobacillus ferrooxidans strain ATCC23270 prokMSA_id:079164 AF465605 Acidithiobacillus ferrooxidans strain TFN-d prokMSA_id:079580 AF465606 Acidithiobacillus ferrooxidans strain TFI prokMSA_id:058315 AF543507 clone BA11 prokMSA_id:058306 AF543512 clone BA45 prokMSA_id:070237 AJ278718 Acidithiobacillus ferrooxidans strain ATCC23270T prokMSA_id:023599 AJ278719 Acidithiobacillus ferrooxidans strain ATCC33020 prokMSA_id:073729 AJ278720 Acidithiobacillus ferrooxidans strain SS4 prokMSA_id:026996 AJ278721 Acidithiobacillus ferrooxidans strain SS6 prokMSA_id:053234 AJ278722 Acidithiobacillus ferrooxidans 23S and internal transcribed spacer 1 ITS1 strain K2 prokMSA_id:053334 AJ278723 Acidithiobacillus ferrooxidans 23S and internal transcribed spacer 1 ITS1 strain D2 prokMSA_id:023040 AJ295655 Acidithiobacillus ferrooxidans clone KF/GS-JG36-22 prokMSA_id:034871 AJ306698 Acidithiobacillus ferrooxidans strain ML1/7-48a prokMSA_id:067355 AJ457804 Acidithiobacillus ferrooxidans strain CC1 prokMSA_id:067356 AJ457806 Acidithiobacillus ferrooxidans strain BRGM1 prokMSA_id:067351 AJ457808 Acidithiobacillus ferrooxidans strain ATCC19859 prokMSA_id:066597 AJ459803 Acidithiobacillus thiooxidans strain ATCC 19377 prokMSA_id:056606 AJ459804 Acidithiobacillus albertensis strain DSM 14366 prokMSA_id:007484 X75266 Thiobacillus ferrooxidans str. N-Fe2. prokMSA_id:007491 X75267 Thiobacillus ferrooxidans str. N-Fe4. prokMSA_id:007500 X75268 Thiobacillus ferrooxidans str. N-Fe3. prokMSA_id:007485 X75269 Thiobacillus thiooxidans str. B-53. prokMSA_id:007489 X86769 clone cOS1. prokMSA_id:007483 X98210 Thiobacillus sp. prokMSA_id:007487 Y11595 str. NFe4. prokMSA_id:007482 Y11596 str. NFe4. 2.28.3.4.1.002 OTU 7 seqs prokMSA_id:007499 AB023405 str. GO-1. prokMSA_id:007498 AF137369 TC 1. prokMSA_id:048523 AF226672 Enrichment culture clone ECC44 prokMSA_id:048511 AF460986 Acidithiobacillus caldus P5-10 prokMSA_id:065356 AF513711 Acidithiobacillus caldus prokMSA_id:007480 X72851 Thiobacillus thiooxidans. prokMSA_id:007494 Z29975 Thiobacillus caldus str. KU DSM 8584 . 2.28.3.4.1.003 OTU 1 seq prokMSA_id:007497 AF068810 VC2.1 Bac43 complete 2.28.3.4.1.004 OTU 2 seqs prokMSA_id:007495 AF023264 Thiobacillus sp. str. C. prokMSA_id:066601 AJ459801 Thermithiobacillus tepidarius strain DSM 3134 2.28.3.4.1.005 OTU 2 seqs prokMSA_id:019136 AF339743 Acidithiobacillus sp. V1 prokMSA_id:021015 AF359940 Acidithiobacillus thiooxidans 2.28.3.4.1.006 OTU 1 seq prokMSA_id:023093 AF411195 clone AMD226 2.28.3.4.1.007 OTU 1 seq prokMSA_id:032422 AJ243934 Acidithiobacillus cuprithermicus 2.28.3.4.1.008 OTU 1 seq prokMSA_id:034427 AJ318178 gamma clone BIsi9 2.28.3.4.1.009 OTU 1 seq prokMSA_id:058309 AF543508 clone BA31 2.28.3.4.1.010 OTU 1 seq prokMSA_id:043933 AF460982 Acidithiobacillus sp. K13 2.28.3.4.1.011 OTU 1 seq prokMSA_id:055354 AF507704 soil clone C167 2.28.3.4.1.012 OTU 1 seq prokMSA_id:060589 AF407710 clone G73 2.28.3.4.1.013 OTU 1 seq prokMSA_id:066596 AJ459802 Thiobacillus sp. DSM 612 strain DSM 612 2.28.3.4.1.014 OTU 1 seq prokMSA_id:079587 AY187337 clone csbio160382 2.28.3.4.1.999 poor quality 59 seqs prokMSA_id:047637 AF332354 clone C26-29 prokMSA_id:031483 AF379016 clone EV3 prokMSA_id:031496 AF379017 clone EV1 prokMSA_id:054766 AF379018 clone EV2 prokMSA_id:037059 AF379020 clone EV5 prokMSA_id:070755 AH001786 Thiobacillus tepidarius prokMSA_id:071704 AH001788 Thiobacillus ferrooxidans IFO 14262 prokMSA_id:073456 AH001789 Thiobacillus thiooxidans prokMSA_id:074340 AH001791 Thiobacillus ferrooxidans prokMSA_id:071367 AH001792 Thiobacillus ferrooxidans prokMSA_id:073743 AH001793 Thiobacillus ferrooxidans F221 prokMSA_id:073776 AH001794 Thiobacillus ferrooxidans LM2 prokMSA_id:070813 AH001795 Thiobacillus ferrooxidans IFO 14245 prokMSA_id:051597 AJ296607 Acidithiobacillus sp. GR-WP59-2 clone GR-WP59-2 prokMSA_id:076345 AJ517353 Acidithiobacillus sp. DGGE band B3 prokMSA_id:075574 AJ517354 Acidithiobacillus sp. DGGE band B4 prokMSA_id:077077 AJ517355 Acidithiobacillus sp. DGGE band B5 prokMSA_id:075853 AJ517356 Acidithiobacillus sp. DGGE band B11 prokMSA_id:077265 AJ517357 Acidithiobacillus sp. DGGE band B16 prokMSA_id:075875 AJ517358 Acidithiobacillus sp. DGGE band B17 prokMSA_id:075680 AJ517359 Acidithiobacillus sp. DGGE band B18 prokMSA_id:075845 AJ517360 Acidithiobacillus sp. DGGE band B19 prokMSA_id:075940 AJ517361 Acidithiobacillus sp. DGGE band B20 prokMSA_id:070552 AJ517445 Acidithiobacillus sp. isolate DGGE B34 prokMSA_id:071954 AJ517446 Acidithiobacillus sp. isolate DGGE B35 prokMSA_id:073087 AJ517447 Acidithiobacillus sp. isolate DGGE B36 prokMSA_id:055752 AY099234 clone MTU-9 prokMSA_id:066085 AY099235 clone MTU-10 prokMSA_id:056493 AY099236 clone MTU-11 prokMSA_id:066083 AY099237 clone MTU-12 prokMSA_id:066081 AY099238 clone MTU-13 prokMSA_id:066080 AY099239 clone MTU-14 prokMSA_id:055773 AY099240 clone MTU-15 prokMSA_id:066079 AY099241 clone MTU-16 prokMSA_id:066078 AY099242 clone MTU-17 prokMSA_id:083104 AY226273 clone BBBB-94 prokMSA_id:072723 M79396 Thiobacillus thiooxidans prokMSA_id:007477 M79397 Thiobacillus thiooxidans str. 3/TA ATCC 19377 . prokMSA_id:073124 M79398 Thiobacillus thiooxidans prokMSA_id:007478 M79401 Thiobacillus thiooxidans DSM 612. prokMSA_id:007488 M79402 Thiobacillus ferrooxidans ATCC 19859. prokMSA_id:071219 M79403 Thiobacillus ferrooxidans prokMSA_id:007479 M79404 Thiobacillus ferrooxidans ATCC 23270 . prokMSA_id:072770 M79406 Thiobacillus ferrooxidans prokMSA_id:007486 M79407 Thiobacillus ferrooxidans str. F221. prokMSA_id:073780 M79408 Thiobacillus ferrooxidans F221 prokMSA_id:069808 M79409 Thiobacillus ferrooxidans F221 prokMSA_id:007493 M79410 Thiobacillus ferrooxidans str. LM2. prokMSA_id:073467 M79411 Thiobacillus ferrooxidans LM2 prokMSA_id:071124 M79412 Thiobacillus ferrooxidans LM2 prokMSA_id:007490 M79413 Thiobacillus ferrooxidans IFO 14245. prokMSA_id:070271 M79414 Thiobacillus ferrooxidans IFO 14245 prokMSA_id:007492 M79424 Thiobacillus tepidarius DSM 3134 . prokMSA_id:007501 M79430 Thiobacillus ferrooxidans IFO 14262. prokMSA_id:070864 M79431 Thiobacillus ferrooxidans IFO 14262 prokMSA_id:071800 M79432 Thiobacillus ferrooxidans IFO 14262 prokMSA_id:007496 X91222 str. OP4. prokMSA_id:007481 X91225 str. EPA15. prokMSA_id:074385 X91227 T.thiooxidans clone pls47 2.28.3.4.2 NSC.OCEANI_SUBGROUP 30 seqs 2.28.3.4.2.001 OTU 13 seqs prokMSA_id:071976 AF338212 Nitrosococcus oceani strain 107 prokMSA_id:018602 AF363287 Nitrosococcus oceani prokMSA_id:073804 AF508986 Nitrosococcus oceani strain AFC132 prokMSA_id:071252 AF508987 Nitrosococcus oceani strain AFC24P prokMSA_id:072842 AF508988 Nitrosococcus oceani strain AFC27 prokMSA_id:072817 AF508989 Nitrosococcus oceani strain AFC36 prokMSA_id:073060 AF508990 Nitrosococcus oceani strain AFC5P prokMSA_id:071278 AF508991 Nitrosococcus oceani strain SWC19 prokMSA_id:056278 AF508992 Nitrosococcus oceani strain AFC3 prokMSA_id:070871 AF508993 Nitrosococcus oceani strain AFC N. oceani prokMSA_id:071198 AF508994 Nitrosococcus oceani strain SW N. oceani prokMSA_id:078358 AJ298726 Nitrosococcus oceani isolate Nc10 prokMSA_id:007502 M96395 Nitrosococcus oceani str. C-107 . 2.28.3.4.2.002 OTU 1 seq prokMSA_id:044340 AF333529 gamma clone R202 2.28.3.4.2.003 OTU 3 seqs prokMSA_id:051207 AF287298 Nitrosococcus halophilus Nc4 prokMSA_id:077857 AJ298727 Nitrosococcus oceani isolate Nc1 prokMSA_id:077717 AJ298748 Nitrosococcus halophilus isolate Nc4 2.28.3.4.2.004 OTU 1 seq prokMSA_id:063326 AF523888 clone RCP2-96 2.28.3.4.2.999 poor quality 12 seqs prokMSA_id:070245 AF338213 Nitrosococcus oceani strain C-27 prokMSA_id:024267 AF392655 clone LBE6 prokMSA_id:021040 AF445085 clone Tc1 prokMSA_id:061521 AY043695 gamma clone NOS7.112WL prokMSA_id:061515 AY043702 gamma clone NOS7.21WL prokMSA_id:061516 AY043704 gamma clone NOS7.83WL prokMSA_id:061424 AY043814 gamma clone NMS8.50WL prokMSA_id:069687 AY144236 gamma clone LTUG00514 prokMSA_id:072092 AY144240 gamma clone LTUG01456 prokMSA_id:076298 AY150961 clone uvi6 prokMSA_id:079466 AY186851 clone uvi6 prokMSA_id:007503 M96398 Nitrosococcus oceani str. C-27. 2.28.3.4.3 BEG.ALBA_SUBGROUP 38 seqs 2.28.3.4.3.001 OTU 4 seqs prokMSA_id:007511 AF035956 Beggiatoa 'Bay of Concepcion' str. Bay of Concepcion. prokMSA_id:071447 AF035957 Beggiatoa sp. 'Bay of Concepcion' prokMSA_id:007507 L41043 Thioploca araucae. prokMSA_id:074216 L41043 Thioploca araucae 2.28.3.4.3.002 OTU 1 seq prokMSA_id:007510 AF064543 Beggiatoa 'Monterey Canyon'. 2.28.3.4.3.003 OTU 1 seq prokMSA_id:007506 X97113 str. TM20. 2.28.3.4.3.004 OTU 1 seq prokMSA_id:022253 AF255642 gamma clone Ebpr12 2.28.3.4.3.005 OTU 2 seqs prokMSA_id:058104 AF498721 Ellin339 prokMSA_id:027669 AJ292676 WD2124 clone WD2124 2.28.3.4.3.006 OTU 1 seq prokMSA_id:043447 AF254403 UASB_TL22 complete 2.28.3.4.3.007 OTU 2 seqs prokMSA_id:073639 AF532769 Beggiatoa sp. clone Dangast A9 prokMSA_id:060451 AF532775 Beggiatoa sp. clone Limfjorden L9 2.28.3.4.3.008 OTU 3 seqs prokMSA_id:060456 AF532770 Beggiatoa sp. clone Limfjorden D4 prokMSA_id:060454 AF532772 Beggiatoa sp. clone Limfjorden L22 prokMSA_id:060452 AF532774 Beggiatoa sp. clone Limfjorden L8 2.28.3.4.3.009 OTU 1 seq prokMSA_id:060453 AF532773 Beggiatoa sp. clone Limfjorden L6 2.28.3.4.3.010 OTU 1 seq prokMSA_id:060455 AF532771 Beggiatoa sp. clone Limfjorden L10 2.28.3.4.3.011 OTU 2 seqs prokMSA_id:067230 AF452892 Thioploca sp. 'Lake Biwa' prokMSA_id:062226 AY115530 Thioploca sp. 'Lake Constance' 2.28.3.4.3.012 OTU 1 seq prokMSA_id:070923 AF129012 Thiomargarita namibiensis 2.28.3.4.3.013 OTU 1 seq prokMSA_id:073838 AF498689 Ellin307 2.28.3.4.3.014 OTU 1 seq prokMSA_id:079213 AF382118 clone ZA3605c 2.28.3.4.3.015 OTU 1 seq prokMSA_id:081307 AF110276 Beggiatoa sp. MS-81-1c 2.28.3.4.3.016 OTU 2 seqs prokMSA_id:081342 AF110273 Beggiatoa sp. OH-75-2a prokMSA_id:081779 AF110274 Beggiatoa alba 2.28.3.4.3.017 OTU 1 seq prokMSA_id:084222 AB108784 Beggiatoa sp. clone:Tokyo Bay A 2.28.3.4.3.018 OTU 1 seq prokMSA_id:084651 AB108786 Beggiatoa sp. clone:Tokyo Bay D 2.28.3.4.3.019 OTU 1 seq prokMSA_id:089553 AY328730 DSSD31 2.28.3.4.3.020 OTU 1 seq prokMSA_id:093707 AJ582040 gamma clone JG36-GS-52 2.28.3.4.3.999 poor quality 9 seqs prokMSA_id:035905 AB036509 TK14-06 prokMSA_id:066454 AJ314580 DGGE band 11 prokMSA_id:087382 AY226104 DGGE gel band b66 prokMSA_id:007504 L40994 Beggiatoa alba str. B15LD DSM 1416. prokMSA_id:007505 L40997 Beggiatoa sp. str. 1401-13. prokMSA_id:007509 L40998 Thioploca ingrica. prokMSA_id:070714 L40998 Thioploca ingrica prokMSA_id:070838 L40999 Thioploca chileae prokMSA_id:007508 L40999 Thioploca chileae. 2.28.3.4.4 THC.GELATINOSA_ASSEMBLAGE 86 seqs 2.28.3.4.4.001 OTU 2 seqs prokMSA_id:007555 Y12365 Chromatium warmingii prokMSA_id:007513 Y12373 Thiococcus pfennigii str. RG3 DSM 226. 2.28.3.4.4.002 OTU 1 seq prokMSA_id:007525 AF142930 Marichromatium PENDANT-18. 2.28.3.4.4.003 OTU 1 seq prokMSA_id:007523 Y11315 Thiocystis violacea str. 2711 N. Pfennig DSM 207 . 2.28.3.4.4.004 OTU 3 seqs prokMSA_id:007522 AJ006221 str. clone 359. prokMSA_id:007520 AJ223234 Chromatium okenii DSM 169 . prokMSA_id:007521 Y12376 Chromatium okenii. 2.28.3.4.4.005 OTU 1 seq prokMSA_id:007519 Y12372 Thiocystis minor DSM 178 . 2.28.3.4.4.006 OTU 1 seq prokMSA_id:007518 AJ224438 Thiocystis violascens DSM 198 . 2.28.3.4.4.007 OTU 2 seqs prokMSA_id:007517 D50655 Thiocystis gelatinosa. prokMSA_id:007516 Y11317 Thiocystis gelatinosa str. 2611 DSMZ 215 . 2.28.3.4.4.008 OTU 2 seqs prokMSA_id:022729 AF384208 Chromatium sp. NM2 prokMSA_id:020680 AF384210 Chromatium sp. RW 2.28.3.4.4.009 OTU 1 seq prokMSA_id:020985 AY012532 Lake Michigan sediment LMBA45 2.28.3.4.4.010 OTU 1 seq prokMSA_id:025151 AF384209 Chromatium sp. NZ 2.28.3.4.4.011 OTU 1 seq prokMSA_id:057803 AY098898 clone SBRL2_16 2.28.3.4.4.012 OTU 1 seq prokMSA_id:057798 AY098903 clone SBRC_30 2.28.3.4.4.013 OTU 2 seqs prokMSA_id:078198 AJ401209 Allochromatium sp. AT2202 prokMSA_id:078218 AJ401210 Allochromatium sp. AT2203 2.28.3.4.4.014 OTU 1 seq prokMSA_id:082612 AY214728 gamma clone SL2-2-A10F 2.28.3.4.4.015 OTU 1 seq prokMSA_id:088197 AY327165 clone ZB115 2.28.3.4.4.016 OTU 1 seq prokMSA_id:088390 AY327171 clone ZB110 2.28.3.4.4.017 OTU 1 seq prokMSA_id:089716 AY327168 clone ZB79 2.28.3.4.4.018 OTU 2 seqs prokMSA_id:097549 AJ538360 clone 13 prokMSA_id:095338 AJ538361 Chromatiaceae 453H-1 strain 453H-1 2.28.3.4.4.999 poor quality 61 seqs prokMSA_id:064065 AB087298 clone:CF20 prokMSA_id:064048 AB087320 clone:CF5 prokMSA_id:071260 AF097768 clone 29511 prokMSA_id:070225 AF097770 clone 29513 prokMSA_id:073814 AF097776 clone 29520 prokMSA_id:021922 AF107324 freshwater LCK-30 prokMSA_id:046336 AF193560 Cytophagales n3r prokMSA_id:028834 AF441887 gamma clone CD11C9 prokMSA_id:024618 AF441889 gamma clone CD11C3 prokMSA_id:048937 AF441891 gamma clone CD11B12 prokMSA_id:043854 AF441894 gamma clone CD11B2 prokMSA_id:051396 AF441895 gamma clone CD11B5 prokMSA_id:029504 AF441897 gamma clone CD11B7 prokMSA_id:019260 AF441898 gamma clone CD11A10 prokMSA_id:053687 AF441899 gamma clone CD11A12 prokMSA_id:026163 AF441900 gamma clone CD11A1 prokMSA_id:047098 AF441904 gamma clone CD11A6 prokMSA_id:021342 AF441905 gamma clone CD11G11 prokMSA_id:040225 AF441906 gamma clone CD11G10 prokMSA_id:048050 AF441908 gamma clone CD11G8 prokMSA_id:040076 AF441911 gamma clone CD11G5 prokMSA_id:022093 AF441912 gamma clone CD11G7 prokMSA_id:038425 AF441913 gamma clone CD11G6 prokMSA_id:037975 AF441914 gamma clone CD11F11 prokMSA_id:040458 AF441915 gamma clone CD11F10 prokMSA_id:041428 AF441916 gamma clone CD11F1 prokMSA_id:044035 AF441918 gamma clone CD11F7 prokMSA_id:035300 AF441919 gamma clone CD11F6 prokMSA_id:047060 AF441920 gamma clone CD11E10 prokMSA_id:074624 AF441921 gamma clone CD11E1 prokMSA_id:034326 AF441922 gamma clone CD11E3 prokMSA_id:022003 AF441925 gamma clone CD11E4 prokMSA_id:036461 AF441927 gamma clone CD11D12 prokMSA_id:027991 AF441928 gamma clone CD11D9 prokMSA_id:048963 AF441932 gamma clone CD11D2 prokMSA_id:020668 AF441933 gamma clone CD11D5 prokMSA_id:020401 AF441936 gamma clone CD11D6 prokMSA_id:033218 AF441937 gamma clone CD11H12 prokMSA_id:021642 AF441938 gamma clone CD11H9 prokMSA_id:043918 AF441939 gamma clone CD11H3 prokMSA_id:030217 AF441941 gamma clone CD11H5 prokMSA_id:065725 AF507655 soil clone C1241 prokMSA_id:041486 AJ006190 chemocline Chrom 1 prokMSA_id:017454 AJ006192 chemocline Chrom 3 prokMSA_id:007524 AJ224430 Isochromatium buderi DSM 176 . prokMSA_id:040988 AJ240001 gamma strain DGGE band CIBAC-15 prokMSA_id:031327 AJ289109 freshwater prokMSA_id:037871 AJ422234 Chromatiaceae isolate DGGE-6 prokMSA_id:038714 AJ422235 Chromatiaceae isolate DGGE-8 prokMSA_id:057792 AY098908 clone SBRC_61 prokMSA_id:079689 AY192997 clone BMSB8 prokMSA_id:083137 AY214612 gamma clone SL2-1-G11 prokMSA_id:082647 AY214726 gamma clone SL2-2-F6F prokMSA_id:087498 AY226107 DGGE gel band e52 prokMSA_id:084096 AY271749 gamma clone 1 prokMSA_id:090547 AY327164 clone ZB80 prokMSA_id:089397 AY327166 clone ZB82 prokMSA_id:088962 AY327172 clone ZB83 prokMSA_id:007515 M26629 Allochromatium vinosum ATCC 17899 . prokMSA_id:007512 M59150 Thermochromatium tepidum str. MC ATCC 43061 . prokMSA_id:007514 Y12369 Allochromatium minutissimum str. glubokoe DSM 1376 . 2.28.3.4.5 TCP.ROSEA_SUBGROUP 38 seqs 2.28.3.4.5.003 OTU 5 seqs prokMSA_id:007532 AF112998 Thiocapsa roseopersicina str. 5811. prokMSA_id:007533 AF112999 Thiocapsa roseopersicina str. M11. prokMSA_id:007534 AF113000 Thiocapsa roseopersicina str. 1711. prokMSA_id:007530 AJ006062 Thiocapsa rosea str. 6611 DSM 235 . prokMSA_id:007531 AJ006213 Thiocapsa roseopersicina str. ML2. 2.28.3.4.5.004 OTU 1 seq prokMSA_id:007529 AB015514 str. BD1-1. 2.28.3.4.5.005 OTU 1 seq prokMSA_id:007526 Y11316 Thiorhodococcus minor str. HA2P ATCC 700259 . 2.28.3.4.5.006 OTU 1 seq prokMSA_id:032089 AF127020 Thiothrix I 2.28.3.4.5.007 OTU 1 seq prokMSA_id:066516 AY100568 clone cvf70103 2.28.3.4.5.008 OTU 2 seqs prokMSA_id:067655 AJ404006 Thiobaca trueperi strain BCH prokMSA_id:067654 AJ404007 Thiobaca trueperi strain OCH-PHB 2.28.3.4.5.009 OTU 1 seq prokMSA_id:074025 AJ242772 Thiocapsa sp. BM-5 2.28.3.4.5.010 OTU 1 seq prokMSA_id:075083 AF525306 Thiorhodococcus drewsii 2.28.3.11.3.011 OTU 2 seqs prokMSA_id:079765 AF453551 gamma clone ML516-J10 2.28.3.4.5.012 OTU 1 seq prokMSA_id:081386 AJ548921 Chromatiaceae clone BIOEST-32 2.28.3.4.5.013 OTU 1 seq prokMSA_id:092472 AY354185 clone pIR3BH10 2.28.3.4.5.014 OTU 1 seq prokMSA_id:093118 AY354128 clone pIR3BG09 2.28.3.4.5.999 poor quality 22 seqs prokMSA_id:034193 AB054971 Thiocapsa sp. 1727a prokMSA_id:084628 AB096617 clone: SUIYO-E4 prokMSA_id:066961 AF442012 clone CD12D7 prokMSA_id:007536 AJ002797 Thiocapsa pendens str. 1314 DSM 236 . prokMSA_id:007535 AJ002798 Thiocapsa rosea str. 6611 DSM 235 . prokMSA_id:047748 AJ006011 clone TBS18 prokMSA_id:032574 AJ006191 chemocline Chrom 2 prokMSA_id:077267 AJ428156 isolate band ao-b7 prokMSA_id:069233 AY143709 clone Lu59 prokMSA_id:077982 AY171324 clone s74 prokMSA_id:077689 AY171390 clone s92 prokMSA_id:084887 AY214909 gamma clone BAC-P109-2E prokMSA_id:091540 AY344388 clone L11-81 prokMSA_id:007527 U43634 clone EH-9. prokMSA_id:007528 U43639 clone EH-26. prokMSA_id:007537 X89364 clone T5811. prokMSA_id:074020 Y12296 Amoebobacter sp. 5813 prokMSA_id:007538 Y12297 Thiolamprovum pedioforme str. Taichung DSM 3802 . prokMSA_id:071389 Y12298 T.roseopersicina prokMSA_id:071305 Y12300 T.roseopersicina strain 10511 prokMSA_id:073810 Y12301 T.roseopersicina strain 5811 prokMSA_id:073188 Y12303 T.roseopersicina strain 9314 2.28.3.4.6 MCH.PURPURATUM_SUBGROUP 157 seqs 2.28.3.4.6.001 OTU 1 seq prokMSA_id:007572 AJ006212 Amoebobacter purpureus str. ML1. 2.28.3.4.6.002 OTU 3 seqs prokMSA_id:007570 AB016986 Thiorhodovibrio winogradskyi str. MBIC2776T. prokMSA_id:007540 AJ006214 Thiorhodovibrio winogradskyi str. SSP1 DSM 6702 . prokMSA_id:007573 Y12368 Thiorhodovibrio sp. 2.28.3.4.6.003 OTU 1 seq prokMSA_id:007571 AF142806 Isochromatium ACE-31. 2.28.3.4.6.004 OTU 1 seq prokMSA_id:007568 X93473 Marichromatium gracile str. BN 5210 DSM 203 . 2.28.3.4.6.006 OTU 5 seqs prokMSA_id:007543 AJ006057 clone 136. prokMSA_id:007565 AJ006058 clone 261. prokMSA_id:007566 AJ006060 clone 345. prokMSA_id:007541 AJ006063 Lamprocystis roseopersicina DSM 229 . prokMSA_id:007564 AJ223235 Amoebobacter purpureus str. ThSchl2 DSM 4197 . 2.28.3.4.6.007 OTU 2 seqs prokMSA_id:034043 AF424131 gamma MERTZ_2CM_338 prokMSA_id:007562 AJ240970 clone Sva0854. 2.28.3.4.6.008 OTU 2 seqs prokMSA_id:007561 AB015252 str. JTB148. prokMSA_id:053723 AF424064 gamma MERTZ_2CM_39 2.28.3.4.6.009 OTU 1 seq prokMSA_id:007560 AF047624 clone SRang2.5. 2.28.3.4.6.010 OTU 1 seq prokMSA_id:007559 X78718 str. Thd2. 2.28.3.4.6.011 OTU 1 seq prokMSA_id:007557 X98597 Halochromatium salexigens str. 6310 DSM 4395 . 2.28.3.4.6.012 OTU 1 seq prokMSA_id:007554 X93472 Halochromatium glycolicum str. BN 3201. 2.28.3.4.6.013 OTU 1 seq prokMSA_id:007553 AF104472 unnamed organism. 2.28.3.4.6.014 OTU 1 seq prokMSA_id:007550 U24110 endosymbiont of Inanidrilus leukodermatus S-oxidizing. 2.28.3.4.6.015 OTU 1 seq prokMSA_id:007547 U14727 symbiont of Laxus sp. found in Belize. 2.28.3.4.6.016 OTU 2 seqs prokMSA_id:026537 AF424062 gamma MERTZ_2CM_31 prokMSA_id:007546 AJ240987 clone Sva0091. 2.28.3.4.6.017 OTU 3 seqs prokMSA_id:007544 AJ006059 clone 335. prokMSA_id:007545 AJ006061 clone 371. prokMSA_id:073594 AJ511274 Chromatiaceae Cad16 2.28.3.4.6.018 OTU 1 seq prokMSA_id:007542 AF154086 clone BPC022. 2.28.3.4.6.019 OTU 1 seq prokMSA_id:007539 X84316 Rhabdochromatium marinum str. 8315-5 DSM 5261 . 2.28.3.4.6.020 OTU 1 seq prokMSA_id:017124 AF424075 gamma MERTZ_2CM_74 2.28.3.4.6.021 OTU 1 seq prokMSA_id:017355 AF424091 gamma MERTZ_2CM_164 2.28.3.4.6.022 OTU 1 seq prokMSA_id:018791 AJ297454 gamma Sva1005 2.28.3.4.6.023 OTU 1 seq prokMSA_id:070247 AJ010124 Thiorhodovobrio winogradskyi strain 4910/06511 2.28.3.4.6.024 OTU 1 seq prokMSA_id:026490 AF424166 gamma MERTZ_21CM_129 2.28.3.4.6.026 OTU 5 seqs prokMSA_id:047651 AF424100 gamma MERTZ_2CM_206 prokMSA_id:007567 AJ240989 clone Sva0318. prokMSA_id:027745 AJ297453 gamma Sva0620 prokMSA_id:056505 AY133403 clone OB3_55 prokMSA_id:087666 AY279073 clone CS052 2.28.3.4.6.027 OTU 1 seq prokMSA_id:029624 AF314424 PHOS-HE54 2.28.3.4.6.028 OTU 1 seq prokMSA_id:031275 AF424120 gamma MERTZ_2CM_291 2.28.3.4.6.029 OTU 1 seq prokMSA_id:032015 AF402983 clone 2.28.3.4.6.030 OTU 2 seqs prokMSA_id:062498 AF513942 Chromatiaceae clone LA4-B63N prokMSA_id:062475 AF513943 Chromatiaceae clone LA7-B30N 2.28.3.4.6.031 OTU 1 seq prokMSA_id:037395 AJ297471 gamma Sva0535 2.28.3.4.6.032 OTU 1 seq prokMSA_id:042746 AF211277 Rhabdochromatium MT58 2.28.3.4.6.033 OTU 1 seq prokMSA_id:042824 AF424099 gamma MERTZ_2CM_204 2.28.3.4.6.034 OTU 1 seq prokMSA_id:043017 AF328174 clone KS25f 2.28.3.4.6.035 OTU 1 seq prokMSA_id:043064 AJ297472 gamma Sva0463 2.28.3.4.6.036 OTU 1 seq prokMSA_id:043810 AF328856 Olavius algarvensis sulfur-oxidizing endosymbiont 2.28.3.4.6.037 OTU 1 seq prokMSA_id:043956 AF328212 clone KS74 2.28.3.4.6.038 OTU 3 seqs prokMSA_id:047560 AF424112 gamma MERTZ_2CM_261 prokMSA_id:059789 AY133401 clone BB2_140 prokMSA_id:059788 AY133402 clone OB3_189 2.28.3.4.6.039 OTU 1 seq prokMSA_id:052529 AJ252618 Agricultural soil clone SC-I-15 2.28.3.4.6.040 OTU 1 seq prokMSA_id:060275 AY129812 gamma clone GCPF47 2.28.3.4.6.041 OTU 1 seq prokMSA_id:065062 AY095758 gamma HI-3 2.28.3.4.6.042 OTU 1 seq prokMSA_id:065650 AF507743 soil clone S175 2.28.3.4.6.043 OTU 1 seq prokMSA_id:067781 AF420361 isolate C1_B009 2.28.3.4.6.044 OTU 1 seq prokMSA_id:071248 Y12373 Thiocapsa pfennigii 2.28.3.4.6.045 OTU 1 seq prokMSA_id:071426 AJ277022 Thiococcus sp. A31 2.28.3.4.6.046 OTU 1 seq prokMSA_id:071945 AJ010125 Thiocapsa sp. strain 8320 2.28.3.4.6.047 OTU 1 seq prokMSA_id:074367 AF523329 clone P4-26 2.28.3.4.6.048 OTU 1 seq prokMSA_id:075050 AJ518784 gamma clone JG37-AG-14 2.28.3.4.6.049 OTU 1 seq prokMSA_id:075464 AF432617 clone C16.58WL 2.28.3.4.6.050 OTU 1 seq prokMSA_id:077169 AJ519658 gamma clone GuBH2-AD-31 2.28.3.4.6.051 OTU 1 seq prokMSA_id:077704 AY171316 clone s23 2.28.3.4.6.052 OTU 1 seq prokMSA_id:077731 AY171360 clone s69 2.28.3.4.6.053 OTU 2 seqs prokMSA_id:077961 AJ401211 Thiococcus sp. AT2204 prokMSA_id:077763 AJ401213 Thiococcus sp. AT2206 2.28.3.4.6.054 OTU 1 seq prokMSA_id:077991 AY171340 clone s99m 2.28.3.4.6.055 OTU 2 seqs prokMSA_id:078036 AJ401218 Halochromatium sp. AR2201 prokMSA_id:078327 AJ401219 Halochromatium sp. AR2202 2.28.3.4.6.056 OTU 1 seq prokMSA_id:078112 AJ401212 Thiococcus sp. AT2205 2.28.3.4.6.057 OTU 1 seq prokMSA_id:080692 AY193235 clone Bol13 2.28.3.4.6.058 OTU 1 seq prokMSA_id:080907 AY193142 clone Bol37 2.28.3.4.6.059 OTU 1 seq prokMSA_id:081479 AY216459 clone KM90 2.28.3.4.6.060 OTU 1 seq prokMSA_id:089250 AY327176 clone ZB94 2.28.3.4.6.061 OTU 1 seq prokMSA_id:090521 AY327178 clone ZB99 2.28.3.4.6.062 OTU 1 seq prokMSA_id:091815 AY345523 clone W1-A26 2.28.3.4.6.063 OTU 1 seq prokMSA_id:093131 AY354159 clone pIR3BD01 2.28.3.4.6.999 poor quality 76 seqs prokMSA_id:036915 AB041311 ECS41 prokMSA_id:087436 AB110010 Chromatium sp. Kaiike prokMSA_id:007574 AF001580 Marichromatium purpuratum str. BN 5500 DSM 1591 . prokMSA_id:007569 AF001581 Marichromatium purpuratum str. 95CAR100a. prokMSA_id:025690 AF097784 clone 2956 prokMSA_id:072209 AF097827 clone 4954 prokMSA_id:038405 AF107320 freshwater LCK-22 prokMSA_id:016454 AF107325 freshwater LCK-31 prokMSA_id:042012 AF141498 gamma clone CRE-PA9 prokMSA_id:018723 AF142956 TAYNAYA-10 prokMSA_id:048857 AF142957 TAYNAYA-11 prokMSA_id:007551 AF154058 clone 2_25. prokMSA_id:007552 AF154060 clone 2_14. prokMSA_id:045183 AF170773 gamma QSSC8L-13 prokMSA_id:032683 AF194199 gamma n25d prokMSA_id:032819 AF194200 gamma n26r prokMSA_id:039260 AF223286 gamma B2M18 prokMSA_id:018004 AF223302 spirochaete B2M19 prokMSA_id:047011 AF315423 temperate forest soil C6061 prokMSA_id:039146 AF328187 clone KS45f prokMSA_id:021155 AF332279 clone C12-39 prokMSA_id:040790 AF332288 clone C12-24 prokMSA_id:068243 AF365480 clone BM89MF1BG3 prokMSA_id:068197 AF365531 clone BM89MF5BH10 prokMSA_id:068008 AF365747 clone BT60DS4BE11 prokMSA_id:067937 AF365837 clone BT60PA10BE1 prokMSA_id:067757 AF423367 gamma isolate DGGE band D1 prokMSA_id:067756 AF423368 gamma isolate DGGE band D2 prokMSA_id:019128 AF429121 clone CR99-24-11 prokMSA_id:038077 AF429122 clone CR99-24-12 prokMSA_id:044778 AF429192 clone CR99-2-06 prokMSA_id:064173 AF477840 prokaryote isolate DGGE Band 53-UIB 11% pond prokMSA_id:067280 AF495408 clone F10.51 prokMSA_id:067086 AF499380 clone JCL1-26 prokMSA_id:055670 AF507661 soil clone C1114 prokMSA_id:062728 AF507824 gamma clone ML623J-52 prokMSA_id:061152 AF530107 isolate MGP DGGE Band 12D prokMSA_id:061153 AF530109 isolate MGP DGGE Band 13 prokMSA_id:007556 AJ002796 Thiohalocapsa halophila str. SG3202 DSM 6210 . prokMSA_id:074430 AJ006193 chemocline Chrom 4 prokMSA_id:031380 AJ006194 chemocline ML660 prokMSA_id:044131 AJ006195 chemocline ML1970 prokMSA_id:024390 AJ006196 chemocline ML3720 prokMSA_id:070474 AJ006197 chemocline ML9100 prokMSA_id:007548 AJ006530 Thiorhodospira sibirica str. A12. prokMSA_id:073663 AJ010126 Thiocapsa sp. strain 8321 prokMSA_id:007470 AJ010297 Thiorhodovibrio sibirica prokMSA_id:007558 AJ011498 str. Tobar01. prokMSA_id:007549 AJ224439 Marichromatium purpuratum str. BN 5500 DSM 1591 . prokMSA_id:050415 AJ232879 clone LRE18 prokMSA_id:074764 AJ239995 gamma strain DGGE band CIBAC-7 prokMSA_id:070089 AJ250029 freshwater LCS-01 prokMSA_id:070085 AJ277023 Thiococcus sp. A26 prokMSA_id:060144 AJ347070 clone TK60 prokMSA_id:073510 AJ421115 clone C11-K33 prokMSA_id:063904 AJ493370 clone m1a-6b prokMSA_id:061429 AY043807 gamma clone NMS8.145WL prokMSA_id:077871 AY171392 clone s105 prokMSA_id:080217 AY192992 clone BMSB1 prokMSA_id:079842 AY192993 clone BMSB10 prokMSA_id:080183 AY192998 clone BMSB9 prokMSA_id:080421 AY193245 clone Bol46 prokMSA_id:086867 AY226103 DGGE gel band b52 prokMSA_id:084524 AY242723 soil clone TcA14 prokMSA_id:086818 AY274238 gamma isolate DGGE band GWS-AG-4 prokMSA_id:087553 AY274239 gamma isolate DGGE band GWS-AG-5 prokMSA_id:087449 AY274250 gamma isolate DGGE band GWS-SE-4 prokMSA_id:087918 AY283115 gamma clone NS-31 prokMSA_id:089306 AY327174 clone ZB103 prokMSA_id:088918 AY327175 clone ZB97 prokMSA_id:089262 AY327177 clone ZB98 prokMSA_id:090156 AY327179 clone ZB95 prokMSA_id:093971 AY361932 clone P8-GEN-20 prokMSA_id:069762 Y12299 Chromatium sp. EP2204 prokMSA_id:072215 Y12302 T.roseopersicina strain 5812 prokMSA_id:007563 Y12366 Amoebobacter purpureus str. ThSchl2 DSM 4197 . 2.28.3.5 ACHROMATIUM_ASSEMBLAGE 639 seqs 2.28.3.5.001 OTU 3 seqs prokMSA_id:007644 AJ240968 clone Sva0862. prokMSA_id:007651 AJ240986 clone Sva0071. prokMSA_id:007636 AJ240988 clone Sva0864. 2.28.3.5.002 OTU 1 seq prokMSA_id:007650 U41049 unnamed organism. 2.28.3.5.003 OTU 1 seq prokMSA_id:007649 M90415 symbiont of Solemya velum. 2.28.3.5.004 OTU 1 seq prokMSA_id:007646 AJ240974 clone Sva0115. 2.28.3.5.005 OTU 1 seq prokMSA_id:007645 AJ240971 clone Sva0304. 2.28.3.5.006 OTU 1 seq prokMSA_id:007643 AB015253 str. JTB254. 2.28.3.5.007 OTU 1 seq prokMSA_id:007642 AB015250 str. JTB35. 2.28.3.5.009 OTU 2 seqs prokMSA_id:007583 L25707 symbiont of Lucina floridana gill. prokMSA_id:007640 L25712 symbiont of Codakia costata gill. 2.28.3.5.010 OTU 2 seqs prokMSA_id:031566 AF235115 gamma KTc1113 prokMSA_id:007639 L10949 marine snow associated clone agg47. 2.28.3.5.014 OTU 1 seq prokMSA_id:007633 AB013271 str. NKB19. 2.28.3.5.015 OTU 3 seqs prokMSA_id:007630 AB015548 str. BD3-6. prokMSA_id:007631 AB015571 str. BD5-16. prokMSA_id:007632 AB015576 str. BD6-6. 2.28.3.5.016 OTU 1 seq prokMSA_id:007629 AF154087 clone BPC023. 2.28.3.5.017 OTU 1 seq prokMSA_id:007628 L25709 symbiont of Solemya reidi gill. 2.28.3.5.018 OTU 1 seq prokMSA_id:007624 U77480 unnamed organism. 2.28.3.5.019 OTU 1 seq prokMSA_id:007623 U77478 unnamed organism. 2.28.3.5.021 OTU 9 seqs prokMSA_id:067480 AB073120 Endosymbiont of Lamellibrachia satsuma prokMSA_id:007641 AF165907 str. Shinkai #6500. prokMSA_id:082463 AY129090 Endosymbiont of Lamellibrachia barhami prokMSA_id:081446 AY129091 Endosymbiont of Lamellibrachia barhami prokMSA_id:081637 AY129106 Endosymbiont of Escarpia laminata prokMSA_id:081388 AY129107 Endosymbiont of Escarpia laminata prokMSA_id:081571 AY129113 Endosymbiont of Lamellibrachia barhami prokMSA_id:007621 U77479 unnamed organism. prokMSA_id:007622 U77481 unnamed organism. 2.28.3.5.023 OTU 1 seq prokMSA_id:007619 AF165908 str. Alvin #2839. 2.28.3.5.024 OTU 1 seq prokMSA_id:007618 AB022713 str. KI89C. 2.28.3.5.025 OTU 1 seq prokMSA_id:007617 X95229 symbiont of Lucina nassula. 2.28.3.5.028 OTU 2 seqs prokMSA_id:007614 AB015537 str. BD2-7. prokMSA_id:041945 AF424129 gamma MERTZ_2CM_325 2.28.3.5.029 OTU 6 seqs prokMSA_id:007611 AF129552 Achromatium HK1. prokMSA_id:007612 AF129553 Achromatium HK2. prokMSA_id:007602 AF129554 Achromatium HK3. prokMSA_id:007603 AF129555 Achromatium HK6. prokMSA_id:007613 AF129558 Achromatium HK15. prokMSA_id:007604 AF129559 Achromatium HK24. 2.28.3.5.030 OTU 2 seqs prokMSA_id:007609 AF129549 Achromatium JD2. prokMSA_id:007610 AF129551 Achromatium JD13. 2.28.3.5.031 OTU 2 seqs prokMSA_id:007607 AJ010595 Achromatium minus. prokMSA_id:007608 AJ010596 Achromatium minus. 2.28.3.5.032 OTU 1 seq prokMSA_id:007606 X84980 symbiont of Lucina pectinata gill. 2.28.3.5.033 OTU 1 seq prokMSA_id:007601 AF142798 clone ACE-21. 2.28.3.5.034 OTU 1 seq prokMSA_id:007600 AF142830 clone BURTON-10. 2.28.3.5.035 OTU 1 seq prokMSA_id:007599 AF159683 clone HstpL26. 2.28.3.5.036 OTU 1 seq prokMSA_id:007598 X84979 symbiont of Codakia orbicularis gill. 2.28.3.5.037 OTU 1 seq prokMSA_id:007596 AF129557 Achromatium HK13. 2.28.3.5.038 OTU 3 seqs prokMSA_id:007595 AF129556 Achromatium HK9. prokMSA_id:007591 AJ010593 Achromatium oxaliferum. prokMSA_id:007592 AJ010594 Achromatium oxaliferum. 2.28.3.5.039 OTU 1 seq prokMSA_id:007594 AF129550 Achromatium JD8. 2.28.3.5.040 OTU 1 seq prokMSA_id:007593 AF129548 Achromatium JD1. 2.28.3.5.043 OTU 1 seq prokMSA_id:007585 L25711 symbiont of Anodontia phillipiana bivalve mollusc gill. 2.28.3.5.044 OTU 1 seq prokMSA_id:007580 L07864 symbiont of Solemya reidi. 2.28.3.5.045 OTU 7 seqs prokMSA_id:007578 AB015583 str. BD7-8. prokMSA_id:030180 AB077346 gamma clone:TYM--9 prokMSA_id:048098 AF424056 gamma MERTZ_2CM_2 prokMSA_id:040199 AF424074 gamma MERTZ_2CM_73 prokMSA_id:037335 AF424173 gamma MERTZ_21CM_223 prokMSA_id:059787 AY133404 clone OB3_57 prokMSA_id:075842 AY164428 gamma clone DLIB-98 2.28.3.5.046 OTU 1 seq prokMSA_id:007577 AF165909 str. Alvin #2837. 2.28.3.5.047 OTU 1 seq prokMSA_id:007575 L01575 symbiont of Thyasira flexuosa gill. 2.28.3.5.048 OTU 1 seq prokMSA_id:016486 AF424098 gamma MERTZ_2CM_185 2.28.3.5.049 OTU 1 seq prokMSA_id:069316 AY145601 gamma clone DC8-80-1 2.28.3.5.050 OTU 1 seq prokMSA_id:017048 AF424082 gamma MERTZ_2CM_112 2.28.3.5.051 OTU 1 seq prokMSA_id:017560 AF328223 clone KS90 2.28.3.5.052 OTU 2 seqs prokMSA_id:017654 AJ252637 Agricultural soil clone SC-I-47 prokMSA_id:034477 AJ252661 Agricultural soil clone SC-I-85 2.28.3.5.053 OTU 1 seq prokMSA_id:017992 AJ400353 marine ZD0417 2.28.3.5.054 OTU 3 seqs prokMSA_id:050382 AB077347 gamma clone:TYM--10 prokMSA_id:018050 AF424076 gamma MERTZ_2CM_86 prokMSA_id:088336 AJ567539 gamma clone MBMPE13 2.28.3.5.055 OTU 1 seq prokMSA_id:018389 AF424134 gamma MERTZ_0CM_58 2.28.3.5.056 OTU 1 seq prokMSA_id:018424 AY034139 Thiobacillus prosperus 2.28.3.5.057 OTU 1 seq prokMSA_id:018843 AF469255 gamma clone 33-FL95B98 2.28.3.5.058 OTU 1 seq prokMSA_id:020074 Z88573 isolate HNSS31 2.28.3.5.059 OTU 1 seq prokMSA_id:020176 AJ252663 Agricultural soil clone SC-I-87 2.28.3.5.060 OTU 1 seq prokMSA_id:020252 AF348719 delta clone MPD-41 2.28.3.5.061 OTU 1 seq prokMSA_id:020997 AF424175 gamma MERTZ_21CM_269 2.28.3.5.062 OTU 1 seq prokMSA_id:021073 AF424128 gamma MERTZ_2CM_323 2.28.3.5.063 OTU 1 seq prokMSA_id:022612 AF285615 Car175f 2.28.3.5.064 OTU 1 seq prokMSA_id:022965 AF469259 gamma clone 33-FL111B98 2.28.3.5.065 OTU 1 seq prokMSA_id:023199 AF424122 gamma MERTZ_2CM_300 2.28.3.5.066 OTU 1 seq prokMSA_id:024022 AB042414 Maorithyas hadalis gill thioautotophic symbiont II ssrRNA 2.28.3.5.067 OTU 1 seq prokMSA_id:024359 AF424164 gamma MERTZ_21CM_112 2.28.3.5.068 OTU 1 seq prokMSA_id:059167 AY136133 Gamma RED77 2.28.3.5.069 OTU 1 seq prokMSA_id:024728 AF424097 gamma MERTZ_2CM_182 2.28.3.5.070 OTU 1 seq prokMSA_id:024814 AF223300 gamma B2M61 2.28.3.5.071 OTU 3 seqs prokMSA_id:075563 AF431377 gamma clone C47.04PG prokMSA_id:076553 AF432807 clone N29.17SM prokMSA_id:025316 AJ292680 WD235 clone WD235 2.28.3.5.072 OTU 1 seq prokMSA_id:072559 AF170424 Sulfur-oxidizing NDII1.1 2.28.3.5.073 OTU 1 seq prokMSA_id:025684 AF424110 gamma MERTZ_2CM_258 2.28.3.5.074 OTU 1 seq prokMSA_id:025726 AF424083 gamma MERTZ_2CM_114 2.28.3.5.075 OTU 2 seqs prokMSA_id:025823 AF328198 clone KS59 prokMSA_id:036493 AF328209 clone KS72 2.28.3.5.076 OTU 2 seqs prokMSA_id:026131 AF351226 gamma clone 4-3 prokMSA_id:051103 AF351227 beta clone 4-4 2.28.3.5.077 OTU 2 seqs prokMSA_id:026498 AF424119 gamma MERTZ_2CM_288 prokMSA_id:059792 AY133398 clone OB3_36 2.28.3.5.078 OTU 1 seq prokMSA_id:026590 AF424107 gamma MERTZ_2CM_252 2.28.3.5.079 OTU 1 seq prokMSA_id:027330 AF424081 gamma MERTZ_2CM_110 2.28.3.5.080 OTU 1 seq prokMSA_id:027404 AF424121 gamma MERTZ_2CM_299 2.28.3.5.082 OTU 3 seqs prokMSA_id:007587 AB015248 str. JTB23. prokMSA_id:028153 AF424059 gamma MERTZ_2CM_20 prokMSA_id:075932 AY164417 gamma clone DLIB-72 2.28.3.5.083 OTU 1 seq prokMSA_id:028269 AJ401384 gamma DSS15 2.28.3.5.084 OTU 1 seq prokMSA_id:030212 AF424090 gamma MERTZ_2CM_139 2.28.3.5.085 OTU 1 seq prokMSA_id:030391 AF424314 MERTZ_0CM_6 2.28.3.5.086 OTU 1 seq prokMSA_id:030959 AF328211 clone KS75 2.28.3.5.087 OTU 1 seq prokMSA_id:031156 AF424151 gamma MERTZ_0CM_330 2.28.3.5.088 OTU 1 seq prokMSA_id:031454 AF223299 gamma B2M60 2.28.3.5.089 OTU 2 seqs prokMSA_id:045930 AF354614 gamma Arctic97C-5 prokMSA_id:032189 AJ400349 marine ZD0408 2.28.3.5.090 OTU 1 seq prokMSA_id:032280 U62131 Solemya terraeregina gill symbiont small subunit 2.28.3.5.091 OTU 1 seq prokMSA_id:032355 AF255638 gamma clone Ebpr13 2.28.3.5.092 OTU 1 seq prokMSA_id:032647 AJ296552 GR-296.II.77 clone GR-296.II.77 2.28.3.5.093 OTU 1 seq prokMSA_id:032656 AF424085 gamma MERTZ_2CM_118b 2.28.3.5.094 OTU 1 seq prokMSA_id:032932 AB077344 gamma clone:TYM--7 2.28.3.5.095 OTU 1 seq prokMSA_id:034312 AB022622 gamma SB09 2.28.3.5.096 OTU 1 seq prokMSA_id:034480 AB022611 gamma SA50 2.28.3.5.097 OTU 1 seq prokMSA_id:034593 AF440720 gamma ARCT1-45 2.28.3.5.098 OTU 1 seq prokMSA_id:034884 AF434960 sponge symbiont RSWS5 2.28.3.5.099 OTU 1 seq prokMSA_id:035114 AF379688 clone SL6 2.28.3.5.100 OTU 1 seq prokMSA_id:035181 AF469313 gamma clone CTD12B 2.28.3.5.102 OTU 1 seq prokMSA_id:035443 AF333534 gamma clone R93 2.28.3.5.103 OTU 1 seq prokMSA_id:035686 AF424114 gamma MERTZ_2CM_271 2.28.3.5.104 OTU 1 seq prokMSA_id:035958 U62130 Solemya pusilla gill symbiont small subunit 2.28.3.5.105 OTU 1 seq prokMSA_id:036242 AF268995 SBRH70 2.28.3.5.106 OTU 1 seq prokMSA_id:036283 AF424179 gamma MERTZ_21CM_314 2.28.3.5.108 OTU 3 seqs prokMSA_id:007634 AB013829 str. 46.m. prokMSA_id:036334 AF424153 gamma MERTZ_0CM_372 prokMSA_id:088124 AJ567594 Pseudomonas sp. clone MBAE41 2.28.3.5.110 OTU 1 seq prokMSA_id:036950 AF333531 gamma clone R13 2.28.3.5.111 OTU 1 seq prokMSA_id:037006 AF223298 gamma B2M54 2.28.3.5.112 OTU 1 seq prokMSA_id:037274 AF170421 Sulfur-oxidizing OBII5 2.28.3.5.113 OTU 1 seq prokMSA_id:037275 AF434983 sponge symbiont JAWS6 2.28.3.5.114 OTU 2 seqs prokMSA_id:037302 AB042544 Thiothrix sp. EJ1M-B prokMSA_id:038006 AB042545 Thiothrix sp. EJ2M-B 2.28.3.5.115 OTU 1 seq prokMSA_id:037316 AJ401386 gamma DSS65 2.28.3.5.116 OTU 1 seq prokMSA_id:037621 AF424068 gamma MERTZ_2CM_53 2.28.3.5.117 OTU 1 seq prokMSA_id:037738 AB041312 ECS42 2.28.3.5.119 OTU 1 seq prokMSA_id:038399 AF424093 gamma MERTZ_2CM_167 2.28.3.5.120 OTU 1 seq prokMSA_id:038854 AJ387899 SJP-2 clone SJP-2 2.28.3.5.121 OTU 1 seq prokMSA_id:039238 AF337872 gold mine D49 2.28.3.5.122 OTU 1 seq prokMSA_id:039317 AF194195 gamma n7d 2.28.3.5.123 OTU 1 seq prokMSA_id:039796 AF145821 Metal-contaminated soil clone K20-18 2.28.3.5.124 OTU 1 seq prokMSA_id:039848 AF328219 clone KS86 2.28.3.5.126 OTU 9 seqs prokMSA_id:007635 AB015254 str. JTB255. prokMSA_id:040117 AF424095 gamma MERTZ_2CM_172 prokMSA_id:048763 AF424103 gamma MERTZ_2CM_225 prokMSA_id:025681 AF424123 gamma MERTZ_2CM_301 prokMSA_id:047525 AF424143 gamma MERTZ_0CM_175 prokMSA_id:031043 AF424150 gamma MERTZ_0CM_260 prokMSA_id:090324 AJ567568 gamma clone MBMPE64 prokMSA_id:059778 AY133417 clone OB3_49 prokMSA_id:094420 AY373400 clone A134 complete 2.28.3.5.127 OTU 1 seq prokMSA_id:040146 AF223296 gamma B2M23 2.28.3.5.128 OTU 1 seq prokMSA_id:040388 AF469316 gamma clone CTD27B 2.28.3.5.129 OTU 1 seq prokMSA_id:041075 AF424058 gamma MERTZ_2CM_9 2.28.3.5.130 OTU 1 seq prokMSA_id:041309 AF170422 Sulfur-oxidizing ODIII6 2.28.3.5.131 OTU 1 seq prokMSA_id:041625 AB022641 gamma SA28 2.28.3.5.132 OTU 1 seq prokMSA_id:041685 AF424113 gamma MERTZ_2CM_265 2.28.3.5.133 OTU 2 seqs prokMSA_id:041892 AF424070 gamma MERTZ_2CM_55 prokMSA_id:053877 AF424163 gamma MERTZ_21CM_103 2.28.3.5.134 OTU 1 seq prokMSA_id:042118 AB022635 gamma TK12 2.28.3.5.135 OTU 1 seq prokMSA_id:042308 AF402973 clone 2.28.3.5.136 OTU 1 seq prokMSA_id:042463 AF232924 MS11 2.28.3.5.137 OTU 1 seq prokMSA_id:043149 AB022626 gamma SB21 2.28.3.5.138 OTU 1 seq prokMSA_id:043943 AF424157 gamma MERTZ_0CM_369 2.28.3.5.139 OTU 1 seq prokMSA_id:043949 AF424158 gamma MERTZ_0CM_387 2.28.3.5.140 OTU 2 seqs prokMSA_id:044069 AH010199 Lake Michigan sediment LMBA25 and genes prokMSA_id:049711 AY012519 Lake Michigan sediment LMBA25 2.28.3.5.141 OTU 1 seq prokMSA_id:044804 AB077345 gamma clone:TYM--8 2.28.3.5.142 OTU 1 seq prokMSA_id:045015 AF424066 gamma MERTZ_2CM_42 2.28.3.5.143 OTU 1 seq prokMSA_id:045103 AF142925 PENDANT-13 2.28.3.5.144 OTU 4 seqs prokMSA_id:036390 AF424078 gamma MERTZ_2CM_92 prokMSA_id:045121 AF424084 gamma MERTZ_2CM_116 prokMSA_id:047983 AF424094 gamma MERTZ_2CM_171 prokMSA_id:035283 AF424144 gamma MERTZ_0CM_209 2.28.3.5.145 OTU 1 seq prokMSA_id:045719 AF424136 gamma MERTZ_0CM_77 2.28.3.5.146 OTU 1 seq prokMSA_id:045822 AF424077 gamma MERTZ_2CM_89 2.28.3.5.147 OTU 1 seq prokMSA_id:073895 AF126545 Thioalcalovibrio denitrificans 2.28.3.5.148 OTU 1 seq prokMSA_id:046902 AF469228 gamma clone 33-FL92B00 2.28.3.5.150 OTU 6 seqs prokMSA_id:007586 AF170359 Dechloromarinus chlorophilus str. NSS. prokMSA_id:065375 AF432145 Selenate-reducing AK4OH1 prokMSA_id:065374 AF432146 Selenate-reducing KE4OH1 prokMSA_id:063759 AF521582 Gamma IR prokMSA_id:076866 AY164403 gamma clone DLIB-3 prokMSA_id:085831 AY226293 gamma clone DBBB-42 2.28.3.5.151 OTU 1 seq prokMSA_id:047907 AF424117 gamma MERTZ_2CM_277 2.28.3.5.152 OTU 1 seq prokMSA_id:048069 AF424145 gamma MERTZ_0CM_211 2.28.3.5.153 OTU 1 seq prokMSA_id:048175 AF469308 gamma clone 33-PA34B00 2.28.3.5.154 OTU 1 seq prokMSA_id:048268 AF424285 alpha MERTZ_0CM_244 2.28.3.5.155 OTU 1 seq prokMSA_id:048635 AF369720 gamma clone 123 2.28.3.5.156 OTU 1 seq prokMSA_id:048749 AF424130 gamma MERTZ_2CM_330 2.28.3.5.157 OTU 1 seq prokMSA_id:048991 AF424118 gamma MERTZ_2CM_279 2.28.3.5.158 OTU 2 seqs prokMSA_id:057450 AJ441234 gamma clone P. palm A 79 prokMSA_id:097577 AJ575949 gamma clone T2-PP12-481 2.28.3.5.159 OTU 1 seq prokMSA_id:049500 AF424137 gamma MERTZ_0CM_85 2.28.3.5.160 OTU 1 seq prokMSA_id:049810 AJ387900 SJP-3 clone SJP-3 2.28.3.5.161 OTU 1 seq prokMSA_id:049895 AF424146 gamma MERTZ_0CM_220 2.28.3.5.162 OTU 1 seq prokMSA_id:050129 AF424072 gamma MERTZ_2CM_66 2.28.3.5.163 OTU 1 seq prokMSA_id:072638 AF170423 Sulfur-oxidizing OAII2 2.28.3.5.164 OTU 2 seqs prokMSA_id:051009 AB054146 HOC12 prokMSA_id:050717 AB054165 HOC31 2.28.3.5.165 OTU 1 seq prokMSA_id:051403 AF195461 gamma kpj02f 2.28.3.5.166 OTU 1 seq prokMSA_id:051730 AF424125 gamma MERTZ_2CM_304 2.28.3.5.167 OTU 1 seq prokMSA_id:051732 AF316801 Crater Lake CL500-74 2.28.3.5.168 OTU 2 seqs prokMSA_id:052144 AJ401385 gamma DSS54 prokMSA_id:095014 AY373397 clone A122 complete 2.28.3.5.169 OTU 1 seq prokMSA_id:052794 AF424139 gamma MERTZ_0CM_113 2.28.3.5.170 OTU 1 seq prokMSA_id:053614 AJ306685 gamma strain NS0106 2.28.3.5.171 OTU 1 seq prokMSA_id:055388 AF523886 clone RCP2-54 2.28.3.5.172 OTU 1 seq prokMSA_id:056697 AY129793 gamma clone GCPF19 2.28.3.5.173 OTU 1 seq prokMSA_id:059776 AY133421 clone OB3_75 2.28.3.5.174 OTU 1 seq prokMSA_id:059777 AY133416 clone OB3_48 2.28.3.5.175 OTU 1 seq prokMSA_id:059784 AY133407 clone OB3_172 2.28.3.5.176 OTU 1 seq prokMSA_id:059790 AY133400 clone BB2_230 2.28.3.5.177 OTU 1 seq prokMSA_id:060630 AF406546 gamma clone AEGEAN_245 2.28.3.5.178 OTU 1 seq prokMSA_id:060638 AF406536 gamma clone AEGEAN_243 2.28.3.5.179 OTU 1 seq prokMSA_id:060868 AY135909 clone SG2-70 2.28.3.5.180 OTU 1 seq prokMSA_id:063327 AF523889 clone RCP1-57 2.28.3.5.181 OTU 1 seq prokMSA_id:063571 AB069800 clone:CS5.30 2.28.3.5.182 OTU 1 seq prokMSA_id:063573 AB069797 clone:CS5.20 2.28.3.5.183 OTU 1 seq prokMSA_id:063580 AB069790 clone:CS2.30 2.28.3.5.184 OTU 1 seq prokMSA_id:064239 AJ421425 Salinisphaera shabanense isolate E1L3A 2.28.3.5.185 OTU 1 seq prokMSA_id:064413 AY102911 clone BCM3S-5B 2.28.3.5.186 OTU 1 seq prokMSA_id:064939 AY095805 gamma CS4K-115 2.28.3.5.187 OTU 1 seq prokMSA_id:065118 AY095693 gamma OR-132 2.28.3.5.188 OTU 1 seq prokMSA_id:065538 AY095430 yard-trimming-compost clone S-67 2.28.3.5.189 OTU 1 seq prokMSA_id:065574 AY095387 yard-trimming-compost clone S-15 2.28.3.5.190 OTU 1 seq prokMSA_id:066525 AY100554 clone cvf74024 2.28.3.5.191 OTU 1 seq prokMSA_id:066569 AJ459800 Acidithiobacillus ferrooxidans strain DSM 2392 2.28.3.5.192 OTU 1 seq prokMSA_id:066921 AJ306780 clone SHA-100 2.28.3.5.193 OTU 1 seq prokMSA_id:067267 AF495421 clone F13.19 2.28.3.5.194 OTU 2 seqs prokMSA_id:074333 AF420355 isolate CS_B046 prokMSA_id:067775 AF420364 isolate C1_B021 2.28.3.5.195 OTU 1 seq prokMSA_id:070339 AF181991 Sulfur-oxidizing NDII1.2 2.28.3.5.196 OTU 1 seq prokMSA_id:070876 AF259641 gamma CtaxTah-3 2.28.3.5.197 OTU 1 seq prokMSA_id:071658 AF354155 delta isolate Eel-TE1A7 2.28.3.5.198 OTU 1 seq prokMSA_id:073147 AF424089 gamma MERTZ_2CM_135 2.28.3.5.199 OTU 1 seq prokMSA_id:074502 AF285612 Car166 2.28.3.5.200 OTU 1 seq prokMSA_id:074812 AF235130 Gamma KT0813 2.28.3.5.201 OTU 1 seq prokMSA_id:075258 AY150902 candidate division NKB19 clone WYO5c 2.28.3.5.202 OTU 1 seq prokMSA_id:075274 AJ519395 actinobacterium clone JG37-AG-10 2.28.3.5.203 OTU 1 seq prokMSA_id:075369 AY150917 clone WYO9bC 2.28.3.5.204 OTU 1 seq prokMSA_id:075736 AJ534627 clone JG36-TzT-192 2.28.3.5.205 OTU 1 seq prokMSA_id:075767 AY164365 gamma clone BLIB-14 2.28.3.5.206 OTU 1 seq prokMSA_id:076026 AJ532712 gamma clone JG34-KF-155 2.28.3.5.207 OTU 1 seq prokMSA_id:076053 AJ518785 gamma clone JG37-AG-87 2.28.3.5.208 OTU 1 seq prokMSA_id:076093 AF431381 gamma clone S51.08PG 2.28.3.5.209 OTU 1 seq prokMSA_id:077172 AY164357 gamma clone ALIB-81 2.28.3.5.210 OTU 1 seq prokMSA_id:077715 AJ535226 gamma clone Hyd24-13 2.28.3.5.211 OTU 1 seq prokMSA_id:077988 AY171368 clone s102 2.28.3.5.212 OTU 1 seq prokMSA_id:078034 AY171333 clone s30 2.28.3.5.213 OTU 1 seq prokMSA_id:078110 AY171352 clone s18 2.28.3.5.214 OTU 1 seq prokMSA_id:078136 AY171384 clone s44 2.28.3.5.215 OTU 1 seq prokMSA_id:078166 AY171367 clone s58 2.28.3.5.216 OTU 1 seq prokMSA_id:078173 AY171328 clone s72 2.28.3.5.217 OTU 1 seq prokMSA_id:078328 AY171364 clone s55 2.28.3.5.218 OTU 1 seq prokMSA_id:078950 AJ536860 gamma clone JG30-KF-C10 2.28.3.5.219 OTU 1 seq prokMSA_id:079132 AB100006 sequences clone: IndB3-17 2.28.3.5.220 OTU 1 seq prokMSA_id:079212 AB099937 sequences clone: IheB2-13 2.28.3.5.221 OTU 1 seq prokMSA_id:079330 AB099938 sequences clone: IheB2-23 2.28.3.5.222 OTU 1 seq prokMSA_id:079838 AF468280 clone ARKIA-12 2.28.3.5.223 OTU 1 seq prokMSA_id:080000 AB094843 clone:OHKB4.36 2.28.3.5.224 OTU 1 seq prokMSA_id:080026 AB094832 clone:OHKB4.4 2.28.3.5.225 OTU 1 seq prokMSA_id:080093 AB094861 clone:OHKB4.95 2.28.3.5.226 OTU 1 seq prokMSA_id:080096 AF453549 gamma clone ML812M-4 2.28.3.5.227 OTU 1 seq prokMSA_id:080841 AJ538046 clone CF34 2.28.3.5.228 OTU 1 seq prokMSA_id:080943 AF468306 clone ARKICE-74 2.28.3.5.229 OTU 1 seq prokMSA_id:081007 AJ538054 clone OF3 2.28.3.5.230 OTU 1 seq prokMSA_id:081107 AF110277 Beggiatoa sp. MS-81-6 2.28.3.5.232 OTU 18 seqs prokMSA_id:081896 AY129087 Endosymbiont of Seepiophila jonesi prokMSA_id:081293 AY129088 Endosymbiont of unclassified escarpiid prokMSA_id:081760 AY129089 Endosymbiont of Seepiophila jonesi prokMSA_id:082009 AY129092 Endosymbiont of Seepiophila jonesi prokMSA_id:081526 AY129093 Endosymbiont of Lamellibrachia barhami prokMSA_id:082451 AY129094 Endosymbiont of Lamellibrachia barhami prokMSA_id:082464 AY129100 Endosymbiont of Lamellibrachia cf. luymesi prokMSA_id:081502 AY129101 Endosymbiont of Seepiophila jonesi prokMSA_id:081952 AY129102 Endosymbiont of Escarpia laminata prokMSA_id:081727 AY129103 Endosymbiont of Lamellibrachia barhami prokMSA_id:082064 AY129104 Endosymbiont of Seepiophila jonesi prokMSA_id:081421 AY129105 Endosymbiont of Seepiophila jonesi prokMSA_id:081173 AY129108 Endosymbiont of Escarpia laminata prokMSA_id:082094 AY129109 Endosymbiont of Escarpia laminata prokMSA_id:081773 AY129110 Endosymbiont of Lamellibrachia sp. 2 prokMSA_id:082292 AY129111 Endosymbiont of Lamellibrachia sp. 2 prokMSA_id:081211 AY129112 Endosymbiont of Lamellibrachia sp. 1 prokMSA_id:007620 U77482 unnamed organism. 2.28.3.5.233 OTU 1 seq prokMSA_id:082627 AY157975 Fe-oxidizing F15 2.28.3.5.234 OTU 1 seq prokMSA_id:082803 AY226278 gamma clone DBBB-107 2.28.3.5.235 OTU 1 seq prokMSA_id:083295 AY221054 clone CCM19a 2.28.3.5.236 OTU 1 seq prokMSA_id:084444 AY214841 beta clone BB-2-C8F 2.28.3.5.237 OTU 1 seq prokMSA_id:084942 AY274150 clone D145 2.28.3.5.238 OTU 1 seq prokMSA_id:085458 AY221082 clone CCU5 2.28.3.5.239 OTU 1 seq prokMSA_id:086085 AY226302 gamma clone DBBB-52 2.28.3.5.240 OTU 1 seq prokMSA_id:086512 AY214605 gamma clone SL2-1-H2 2.28.3.5.242 OTU 7 seqs prokMSA_id:055790 AF420353 isolate CS_B021 prokMSA_id:067774 AF420367 isolate C1_B038 prokMSA_id:086914 AY279037 clone CS050 prokMSA_id:087929 AY279055 clone CS016 prokMSA_id:086813 AY279057 clone CS020 prokMSA_id:087987 AY279070 clone CS047 prokMSA_id:087651 AY279074 clone CS038 2.28.3.5.243 OTU 1 seq prokMSA_id:087182 AY279072 clone CS051 2.28.3.5.244 OTU 1 seq prokMSA_id:087695 AY279039 clone CS013 2.28.3.5.245 OTU 1 seq prokMSA_id:088031 AY279061 clone CS028 2.28.3.5.246 OTU 7 seqs prokMSA_id:089484 AY321389 clone K20 prokMSA_id:089865 AY321393 clone L11 prokMSA_id:088414 AY321410 clone M15 prokMSA_id:088463 AY321413 clone S19 prokMSA_id:090520 AY321415 clone S34 prokMSA_id:088662 AY321424 clone M131 prokMSA_id:088080 AY321431 clone H45 2.28.3.5.247 OTU 1 seq prokMSA_id:088193 AJ567555 clone MBMPE41 2.28.3.5.248 OTU 1 seq prokMSA_id:088634 AY328773 DSSD75 2.28.3.5.249 OTU 1 seq prokMSA_id:088666 AY321398 clone L28 2.28.3.5.250 OTU 2 seqs prokMSA_id:090239 AY321407 clone M13 prokMSA_id:088686 AY321408 clone M140 2.28.3.5.251 OTU 1 seq prokMSA_id:088770 AY310506 Endosymbiont of scaly snail 2.28.3.5.252 OTU 1 seq prokMSA_id:089122 AY327876 gamma clone SF_C7-E4 2.28.3.5.253 OTU 1 seq prokMSA_id:089297 AJ567548 delta clone MBMPE32 2.28.3.5.254 OTU 2 seqs prokMSA_id:089774 AJ567535 gamma clone MBMPE4 prokMSA_id:089381 AJ567542 gamma clone MBMPE23 2.28.3.5.255 OTU 1 seq prokMSA_id:089417 AY321392 clone K25 2.28.3.5.256 OTU 1 seq prokMSA_id:089641 AJ567608 gamma clone MBAE66 2.28.3.5.257 OTU 1 seq prokMSA_id:089831 AJ567545 gamma clone MBMPE27 2.28.3.5.258 OTU 1 seq prokMSA_id:090055 AY289482 soil clone ABS-29 2.28.3.5.259 OTU 1 seq prokMSA_id:090195 AJ567537 gamma clone MBMPE11 2.28.3.5.260 OTU 2 seqs prokMSA_id:090470 AJ567551 gamma clone MBMPE37 prokMSA_id:090293 AJ567564 gamma clone MBMPE52 2.28.3.5.261 OTU 1 seq prokMSA_id:090365 AY321426 clone H6B 2.28.3.5.262 OTU 1 seq prokMSA_id:090523 AY321425 clone S107 2.28.3.5.263 OTU 1 seq prokMSA_id:090573 AY321427 clone H36 2.28.3.5.264 OTU 1 seq prokMSA_id:090609 AJ567591 gamma clone MBAE34 2.28.3.5.265 OTU 1 seq prokMSA_id:091177 AY344381 clone K2-S-18 2.28.3.5.266 OTU 1 seq prokMSA_id:091064 AY344386 clone K200-11 2.28.3.5.267 OTU 1 seq prokMSA_id:091521 AY344377 clone K2-4-12 2.28.3.5.268 OTU 1 seq prokMSA_id:092083 AY354178 clone pIR3BB03 2.28.3.5.269 OTU 1 seq prokMSA_id:092303 AY354177 clone pIR3BD08 2.28.3.5.270 OTU 2 seqs prokMSA_id:092354 AY354133 clone pIR3BF11 prokMSA_id:092346 AY354135 clone pIR3BE07 2.28.3.5.271 OTU 3 seqs prokMSA_id:092751 AY354134 clone pIR3BD09 prokMSA_id:092779 AY354176 clone pIR3BB10 prokMSA_id:092353 AY354187 clone pIR3BG10 2.28.3.5.272 OTU 3 seqs prokMSA_id:092707 AY354138 clone pIR3BE01 prokMSA_id:092666 AY354139 clone pIR3BA01 prokMSA_id:092373 AY354181 clone pIR3BE12 2.28.3.5.273 OTU 1 seq prokMSA_id:092419 AJ581350 gamma clone E01-9C-15 2.28.3.5.274 OTU 1 seq prokMSA_id:092578 AY354173 clone pIR3BA03 2.28.3.5.275 OTU 1 seq prokMSA_id:092809 AY354130 clone pIR3BE08 2.28.3.5.276 OTU 1 seq prokMSA_id:092920 AJ581351 gamma clone E01-9C-26 2.28.3.5.277 OTU 1 seq prokMSA_id:093236 AY360503 clone BSB19-89m 2.28.3.5.278 OTU 1 seq prokMSA_id:093780 AJ582039 gamma clone JG36-GS-61 2.28.3.5.279 OTU 1 seq prokMSA_id:094297 AY373413 clone A58 2.28.3.5.280 OTU 1 seq prokMSA_id:094353 AY373418 clone A76 complete 2.28.3.5.281 OTU 1 seq prokMSA_id:094621 AY373416 clone A64 complete 2.28.3.5.282 OTU 1 seq prokMSA_id:094823 AY373399 clone A130 complete 2.28.3.5.283 OTU 1 seq prokMSA_id:094835 AY373398 clone A126 complete 2.28.3.5.285 OTU 6 seqs prokMSA_id:028141 AF424126 gamma MERTZ_2CM_310 prokMSA_id:019777 AF424159 gamma MERTZ_0CM_397 prokMSA_id:007615 AJ240969 clone Sva0857. prokMSA_id:007616 AJ240991 clone Sva1046. prokMSA_id:007637 AJ240993 clone Sva0120. prokMSA_id:094878 AY373401 clone A139 complete 2.28.3.5.286 OTU 1 seq prokMSA_id:095071 AY373414 clone A59 complete 2.28.3.5.287 OTU 1 seq prokMSA_id:095183 AY225634 gamma clone AT-s26 2.28.3.5.288 OTU 1 seq prokMSA_id:095193 AY225637 gamma clone AT-s75 2.28.3.5.289 OTU 1 seq prokMSA_id:095496 AY375132 clone F8 2.28.3.5.290 OTU 1 seq prokMSA_id:095616 AY375089 clone C20 2.28.3.5.291 OTU 1 seq prokMSA_id:095866 AJ543759 clone 49 2.28.3.5.292 OTU 1 seq prokMSA_id:095937 AY225638 gamma clone AT-s3-48 2.28.3.5.293 OTU 1 seq prokMSA_id:096329 AY225627 gamma clone AT-s68 2.28.3.5.294 OTU 1 seq prokMSA_id:096807 AY375060 clone B185 2.28.3.5.295 OTU 1 seq prokMSA_id:096854 AY225628 gamma clone AT-s3-68 2.28.3.5.296 OTU 1 seq prokMSA_id:096909 AY225631 gamma clone AT-s2-13 2.28.3.5.297 OTU 1 seq prokMSA_id:097007 AY225636 gamma clone AT-s2-59 2.28.3.5.298 OTU 1 seq prokMSA_id:097020 AJ575945 gamma clone T2-PP12-452 2.28.3.5.299 OTU 1 seq prokMSA_id:097596 AY225629 gamma clone AT-s3-26 2.28.3.5.300 OTU 1 seq prokMSA_id:098135 AY225639 gamma clone AT-s3-25 2.28.3.5.301 OTU 1 seq prokMSA_id:098360 AJ575946 gamma clone T2-PP12-454 2.28.3.5.302 OTU 1 seq prokMSA_id:098593 AY386332 Marine gamma HTCC2089 2.28.3.5.303 OTU 1 seq prokMSA_id:098613 AY225635 gamma clone AT-s80 2.28.3.5.304 OTU 1 seq prokMSA_id:098675 AY225633 gamma clone AT-s16 2.28.3.5.305 OTU 1 seq prokMSA_id:098768 AY225632 gamma clone AT-s3-1 2.28.3.5.999 poor quality 246 seqs prokMSA_id:036274 AB022608 gamma SA15 prokMSA_id:051442 AB022639 gamma TK99 prokMSA_id:050944 AB031595 gamma TIHP302-07 prokMSA_id:050463 AB070215 Endosymbiont of Pogonophora sp. JT-1 prokMSA_id:085726 AB108785 Beggiatoa sp. clone:Tokyo Bay C prokMSA_id:090587 AB111846 prokMSA_id:035245 AF016737 soil clone S-24 prokMSA_id:071880 AF097799 clone 1955 prokMSA_id:026096 AF114550 gamma 400m-FREE-31 prokMSA_id:018735 AF114572 gamma 400m-FREE-31 prokMSA_id:028016 AF128710 soil C0121 prokMSA_id:036613 AF128720 soil C032 prokMSA_id:040714 AF141504 gamma clone CRE-PA17 prokMSA_id:039265 AF141510 gamma clone CRE-PA25 prokMSA_id:017106 AF186447 sponge symbiont PAWS59 prokMSA_id:041959 AF194196 gamma n10r prokMSA_id:049288 AF194197 gamma n15d prokMSA_id:021373 AF223289 gamma B2M32 prokMSA_id:023151 AF223290 gamma B2M48 prokMSA_id:028370 AF223292 gamma B2M71 prokMSA_id:024638 AF223297 gamma B2M28 prokMSA_id:051069 AF226232 maize root Zmrc209 prokMSA_id:051798 AF245345 SA30 prokMSA_id:027846 AF257293 marine gamma DHB-45 prokMSA_id:050772 AF270952 clone IAFR312 prokMSA_id:045143 AF270959 clone IAFR510 prokMSA_id:046434 AF280947 clone JS7 prokMSA_id:032922 AF287034 gamma EC-I30 prokMSA_id:026224 AF315415 temperate forest soil C6016 prokMSA_id:045657 AF328175 clone KS26f prokMSA_id:037873 AF332255 clone C12-19 prokMSA_id:052034 AF332272 clone C12-31 prokMSA_id:018291 AF332321 clone T26-23 prokMSA_id:038829 AF332326 clone C26-30 prokMSA_id:017714 AF332344 clone C26-13 prokMSA_id:035895 AF353282 Tui1-5 prokMSA_id:021284 AF353296 Tui2-42 prokMSA_id:049464 AF353301 Tui4-39 prokMSA_id:068276 AF365440 clone BM89MF1BA10 prokMSA_id:068249 AF365472 clone BM89MF1BE9 prokMSA_id:068240 AF365481 clone BM89MF1BG5 prokMSA_id:055230 AF365489 clone BM89MF5BA2 prokMSA_id:068224 AF365499 clone BM89MF5BB7 prokMSA_id:068218 AF365505 clone BM89MF5BD1 prokMSA_id:068214 AF365509 clone BM89MF5BD4 prokMSA_id:068213 AF365510 clone BM89MF5BD5 prokMSA_id:068209 AF365514 clone BM89MF5BE10 prokMSA_id:068204 AF365521 clone BM89MF5BF10 prokMSA_id:068202 AF365524 clone BM89MF5BF7 prokMSA_id:068190 AF365538 clone BT49MF4BF12 prokMSA_id:068180 AF365552 clone BT49MF4BB3 prokMSA_id:068151 AF365584 clone BT60MF2BA5 prokMSA_id:068142 AF365597 clone BT60MF2BH10 prokMSA_id:068133 AF365602 clone BT60MF7BA2 prokMSA_id:068116 AF365620 clone BT60MF7BF5b prokMSA_id:068053 AF365697 clone BT60DS1BC8 prokMSA_id:068030 AF365720 clone BT60DS1BH9 prokMSA_id:068022 AF365729 clone BT60DS4BB11 prokMSA_id:068019 AF365734 clone BT60DS4BC1 prokMSA_id:068014 AF365739 clone BT60DS4BC4 prokMSA_id:056251 AF365755 clone BT60DS4BF1 prokMSA_id:068003 AF365757 clone BT60DS4BF3 prokMSA_id:067995 AF365766 clone BT60DS4BG5 prokMSA_id:067991 AF365772 clone BT60DS4BH5 prokMSA_id:067986 AF365778 clone BM89PA1BbA1 prokMSA_id:067982 AF365781 clone BM89PA1BbA9 prokMSA_id:067969 AF365800 clone BM89PA1BbH4 prokMSA_id:067945 AF365829 clone BT60PA10BC7 prokMSA_id:067943 AF365831 clone BT60PA10BD10 prokMSA_id:067919 AF365854 clone BT60PA10BG11 prokMSA_id:056103 AF365859 clone BT60PA10BH12 prokMSA_id:067920 AF365860 clone BT60PA10BH7 prokMSA_id:067916 AF365861 clone BT60PA10BH8 prokMSA_id:044790 AF367398 gamma clone D102 prokMSA_id:040498 AF369717 gamma clone 16 prokMSA_id:029700 AF369719 gamma clone 97 prokMSA_id:023440 AF369721 gamma clone 277 prokMSA_id:028654 AF379697 clone SL26 prokMSA_id:027709 AF379698 clone SL28 prokMSA_id:048402 AF417878 antarctic soil clone bh1.37 prokMSA_id:068932 AF417905 antarctic soil clone bh4.12 prokMSA_id:050702 AF424104 gamma MERTZ_2CM_226 prokMSA_id:021202 AF424149 gamma MERTZ_0CM_247 prokMSA_id:051744 AF428828 clone CR98-24-22 prokMSA_id:038239 AF428988 clone CR99-35-30 prokMSA_id:076792 AF431347 gamma clone S22.37WL prokMSA_id:075480 AF431357 gamma clone C32.07SM prokMSA_id:075125 AF431365 gamma clone N41.113PG prokMSA_id:075089 AF431370 gamma clone N42.16PG prokMSA_id:076025 AF431375 gamma clone C46.80PG prokMSA_id:076527 AF431379 gamma clone C47.11PG prokMSA_id:054596 AF432278 gamma FO-6d-101 prokMSA_id:020967 AF432299 gamma 0%N-0d-7 prokMSA_id:040794 AF432310 gamma 0%N-6d-94 prokMSA_id:075901 AF432783 clone N11.07WL prokMSA_id:076926 AF432793 clone C19.22WL prokMSA_id:049301 AF434961 sponge symbiont RSWS6 prokMSA_id:063845 AF452611 gamma clone ML516-J12 prokMSA_id:082189 AF466709 gamma clone DBS6I prokMSA_id:069160 AF466910 gamma isolate DGGE band D17 prokMSA_id:068850 AF469227 gamma clone 33-FL84B00 prokMSA_id:043788 AF469314 gamma clone CTD4B prokMSA_id:032659 AF473991 gamma 68-7 prokMSA_id:067130 AF499321 clone JCL4-112 prokMSA_id:062729 AF507821 gamma clone ML623J-47a prokMSA_id:062727 AF507822 gamma clone ML635J-54 prokMSA_id:062026 AF523325 clone P4-48 prokMSA_id:055952 AF530092 isolate MGP DGGE Band 1 prokMSA_id:061158 AF530100 isolate MGP DGGE Band 10A prokMSA_id:061156 AF530102 isolate MGP DGGE Band 11A prokMSA_id:061149 AF530110 isolate MGP DGGE Band 14 prokMSA_id:061147 AF530112 isolate MGP DGGE Band 15B prokMSA_id:061146 AF530113 isolate MGP DGGE Band 16 prokMSA_id:061140 AF530120 isolate MGP DGGE Band 21 prokMSA_id:059427 AF540841 clone DP11u33 prokMSA_id:078830 AF543364 clone F prokMSA_id:058049 AF547420 beta clone CL-S77-307 prokMSA_id:074400 AH001796 Thiobacillus ferrooxidans DSM 2392 prokMSA_id:037914 AJ232812 clone LBS4 prokMSA_id:070684 AJ237759 Thiomicrospira sp. Tms-MPN/Milos-CIVI gen prokMSA_id:029004 AJ289928 1204-33l prokMSA_id:070193 AJ297455 gamma Sva0586 prokMSA_id:032283 AJ297626 clone C44K53 prokMSA_id:066459 AJ314578 DGGE band 9 prokMSA_id:066458 AJ314579 DGGE band 10 prokMSA_id:069314 AJ387894 B3-6 clone B3-6 prokMSA_id:026259 AJ400509 clone Hb1-K42 prokMSA_id:072169 AJ400524 clone Hb1-K74 prokMSA_id:023547 AJ400526 clone Hb1-K99 prokMSA_id:019963 AJ400548 clone Hb3-K4 prokMSA_id:041593 AJ416662 gamma clone env.S047 prokMSA_id:042730 AJ416668 gamma clone env.S070 prokMSA_id:046281 AJ416671 gamma clone env.S091 prokMSA_id:045424 AJ416673 gamma clone env.S058 prokMSA_id:054416 AJ416674 gamma clone env.S044 prokMSA_id:033565 AJ416676 gamma clone env.S112 prokMSA_id:073941 AJ421116 clone C11-K11 prokMSA_id:025482 AJ421206 clone C3-K28 prokMSA_id:070248 AJ421214 clone C4-K10 prokMSA_id:033584 AJ421910 clone Alt9-K93 prokMSA_id:020580 AJ431278 clone 1_23 prokMSA_id:049068 AJ437463 clone 1_32_406 prokMSA_id:050630 AJ437473 clone 2_1_25 prokMSA_id:045972 AJ437477 clone 2_1_6 prokMSA_id:058358 AJ489398 clone NS-X8 prokMSA_id:058354 AJ489401 clone NS-X10 prokMSA_id:064688 AJ489416 clone NSx2-5 prokMSA_id:058339 AJ489424 clone NS-H23 prokMSA_id:058333 AJ489426 clone NS-H25 prokMSA_id:058336 AJ489428 clone NS-C6 prokMSA_id:063909 AJ493365 clone m1-4a prokMSA_id:063907 AJ493366 clone m1-5a prokMSA_id:063906 AJ493369 clone m1a-5a prokMSA_id:085307 AJ495602 delta isolate SA-1 prokMSA_id:083162 AJ495691 isolate SB-46 prokMSA_id:072259 AJ518113 clone Mul01-18 prokMSA_id:057304 AJ518145 clone Mul01-93 prokMSA_id:056221 AJ518196 clone Mul2P1-35 prokMSA_id:057051 AJ518496 clone Qui2P2-10 prokMSA_id:057032 AJ518518 clone Qui2P2-84 prokMSA_id:056936 AJ518652 clone Sai2P2-20 prokMSA_id:056906 AJ518686 clone Sai4P1-66 prokMSA_id:056880 AJ518720 clone Sai4P3-38 prokMSA_id:048304 AY037645 soil clone S141 prokMSA_id:038329 AY038444 gamma clone CD3E1 prokMSA_id:061519 AY043699 gamma clone NOS7.145WL prokMSA_id:049619 AY072245 C6021 prokMSA_id:066671 AY090120 Dechloromarinus sp. clone IAFDn24 prokMSA_id:055758 AY095591 gamma PPO-4 prokMSA_id:064973 AY095622 OS3.5K-7 prokMSA_id:065074 AY095742 gamma NL-141 prokMSA_id:055751 AY095804 gamma CS4K-114 prokMSA_id:065027 AY095822 gamma ARCT2-7 prokMSA_id:064989 AY095916 gamma SH-304 prokMSA_id:082047 AY129095 Endosymbiont of Seepiophila jonesi prokMSA_id:081836 AY129096 Endosymbiont of Lamellibrachia cf. luymesi prokMSA_id:081423 AY129097 Endosymbiont of Lamellibrachia cf. luymesi prokMSA_id:081724 AY129098 Endosymbiont of Seepiophila jonesi prokMSA_id:082154 AY129099 Endosymbiont of Lamellibrachia cf. luymesi prokMSA_id:059780 AY133412 clone OB3_140 prokMSA_id:059773 AY133418 clone BB2_114 prokMSA_id:059772 AY133419 clone BB2_137 prokMSA_id:059774 AY133420 clone BB2_26 prokMSA_id:069241 AY144253 gamma clone LTUG07114 prokMSA_id:070867 AY144262 gamma clone LTUG09414 prokMSA_id:084305 AY172153 Candidatus Competibacter phosphatis clone SBRT60 ; -23S intergenic spacer region complete ; and 23S prokMSA_id:085261 AY172155 Candidatus Competibacter phosphatis clone SBRT79 ; -23S intergenic spacer region complete ; and 23S prokMSA_id:082504 AY172156 Candidatus Competibacter phosphatis clone SBRQ4 ; -23S intergenic spacer region complete ; and 23S prokMSA_id:083156 AY172157 Candidatus Competibacter phosphatis clone SBRQ27 ; -23S intergenic spacer region complete ; and 23S prokMSA_id:084506 AY172161 Candidatus Competibacter phosphatis clone SBRQ19 prokMSA_id:082869 AY172162 Candidatus Competibacter phosphatis clone SBRQ22 prokMSA_id:083960 AY172163 Candidatus Competibacter phosphatis clone SBRQ28 prokMSA_id:083656 AY172164 Candidatus Competibacter phosphatis clone SBRQ51 prokMSA_id:079424 AY180082 symbiont of Aplysina cavernicola isolate DGGE gel band 7 prokMSA_id:079147 AY180083 symbiont of Aplysina cavernicola isolate DGGE gel band 8 prokMSA_id:084153 AY242718 soil clone Tc120-B03 prokMSA_id:085725 AY242719 soil clone Tc127-76 prokMSA_id:083572 AY242720 soil clone Tc132-64 prokMSA_id:084042 AY251209 gamma clone 1B_9 prokMSA_id:085871 AY251212 gamma clone 1B_17 prokMSA_id:086248 AY251225 gamma clone 7A_7 prokMSA_id:091318 AY258611 DGGE Band 13 prokMSA_id:084945 AY263719 gamma clone FBR5 prokMSA_id:086264 AY263736 gamma clone BT3A prokMSA_id:084966 AY263737 gamma clone BT4J prokMSA_id:089394 AY274181 gamma SSCP band S12 prokMSA_id:086894 AY274240 gamma isolate DGGE band GWS-AG-6 prokMSA_id:087811 AY274247 gamma isolate DGGE band GWS-SE-5 prokMSA_id:086988 AY283111 gamma clone NS-06 prokMSA_id:087589 AY283112 gamma clone NS-13 prokMSA_id:087038 AY283113 gamma clone NS-14 prokMSA_id:087389 AY283114 gamma clone NS-28 prokMSA_id:087599 AY283116 gamma clone NS-32 prokMSA_id:087381 AY283117 gamma clone NS-35 prokMSA_id:088027 AY283118 gamma clone NS-36 prokMSA_id:087597 AY283119 gamma clone NS-43 prokMSA_id:086863 AY283120 gamma clone NS-46 prokMSA_id:088044 AY283121 gamma clone NS-66 prokMSA_id:087065 AY283122 gamma clone NS-68 prokMSA_id:091055 AY330255 gamma clone g20-E9 prokMSA_id:091406 AY330256 gamma clone g20-E2 prokMSA_id:091852 AY330257 gamma clone g20-E4 prokMSA_id:091074 AY344389 clone K60-7 prokMSA_id:093891 AY361914 clone P8-GEN-1 prokMSA_id:093709 AY361915 clone P8-GEN-2 prokMSA_id:094219 AY361927 clone P8-GEN-15 prokMSA_id:093909 AY361934 clone P8-GEN-26 prokMSA_id:007590 L42543 Achromatium oxaliferum. prokMSA_id:007627 L48222 Achromatium oxaliferum. prokMSA_id:007605 L48223 Achromatium oxaliferum. prokMSA_id:007626 L48224 Achromatium oxaliferum. prokMSA_id:007597 L48225 Achromatium oxaliferum. prokMSA_id:007581 L48226 Achromatium oxaliferum. prokMSA_id:007589 L48227 Achromatium oxaliferum. prokMSA_id:007625 M79416 Thiobacillus ferrooxidans str. m-1 DSM 2392. prokMSA_id:071239 M79417 Thiobacillus ferrooxidans DSM 2392 prokMSA_id:007647 M99447 symbiont of Codakia orbicularis gill. prokMSA_id:007582 M99448 symbiont of Lucinoma aequizonata gill. prokMSA_id:007638 M99449 symbiont of Lucinoma annulata. prokMSA_id:069780 M99450 Lucinoma annulata symbiont prokMSA_id:007648 M99451 symbiont of Riftia pachyptila trophosome. prokMSA_id:048445 U43632 clone EH-3 prokMSA_id:007588 X91434 clone A11jk. prokMSA_id:007579 X91435 clone A12s. prokMSA_id:007584 X91436 clone A13k. prokMSA_id:007576 Z77415 str. 1-420 C45. 2.28.3.6 FRANCISELLA_GROUP 397 seqs 2.28.3.6.1 THTX.NIVEA_SUBGROUP 53 seqs 2.28.3.6.1.001 OTU 2 seqs prokMSA_id:007657 AF047621 clone SRang1.40. prokMSA_id:018746 AF148516 Thiothrix sp. CT3 2.28.3.6.1.002 OTU 1 seq prokMSA_id:007656 U32940 Thiothrix ramosa. 2.28.3.6.1.003 OTU 1 seq prokMSA_id:007655 L40993 Thiothrix nivea str. JP2 DSM 5205 . 2.28.3.6.1.004 OTU 1 seq prokMSA_id:007652 X87277 Leucothrix mucor. 2.28.3.6.1.005 OTU 7 seqs prokMSA_id:034556 AB042532 Thiothrix sp. B3-1 prokMSA_id:071364 AB042533 Thiothrix sp. B4-1 prokMSA_id:030988 AB042534 Thiothrix sp. B2-7 prokMSA_id:047122 AB042535 Thiothrix sp. SCM-A prokMSA_id:031294 AB042536 Thiothrix sp. B5-1 prokMSA_id:018257 AB042537 Thiothrix sp. B2-8 prokMSA_id:029316 AB042538 Thiothrix sp. OS-F 2.28.3.6.1.006 OTU 5 seqs prokMSA_id:039802 AB042539 Thiothrix eikelboomii strain:KR-A prokMSA_id:046905 AB042540 Thiothrix eikelboomii strain:T1-4 prokMSA_id:019111 AB042541 Thiothrix eikelboomii strain:T2-1 prokMSA_id:018561 AB042542 Thiothrix eikelboomii strain:COM-A prokMSA_id:043111 AB042819 Thiothrix eikelboomii 2.28.3.6.1.007 OTU 8 seqs prokMSA_id:037941 AF298763 TX1 prokMSA_id:029860 AJ307933 mRNA clone sipK4 prokMSA_id:082141 AJ548923 Thiothrix sp. clone BIOEST-34 prokMSA_id:082310 AJ548927 Thiothrix sp. clone BIOEST-38 prokMSA_id:081658 AJ548929 Thiothrix sp. clone BIOEST-40 prokMSA_id:081972 AJ548930 Thiothrix sp. clone BIOEST-41 prokMSA_id:082296 AJ548931 Thiothrix sp. clone BIOEST-42 prokMSA_id:086244 AY208809 gamma clone LKC2.127-27 2.28.3.6.1.008 OTU 1 seq prokMSA_id:038771 AF195464 Leucothrix kpa90rc 2.28.3.6.1.009 OTU 1 seq prokMSA_id:043018 AB042543 Thiothrix sp. SNR-3 2.28.3.6.1.010 OTU 1 seq prokMSA_id:061696 AJ416256 clone Sta5-08 2.28.3.6.1.011 OTU 1 seq prokMSA_id:077888 AY171370 clone s26 2.28.3.6.1.012 OTU 1 seq prokMSA_id:082002 AJ548928 gamma clone BIOEST-39 2.28.3.6.1.013 OTU 1 seq prokMSA_id:085409 AY208814 epsilon clone LKC2.270-2 2.28.3.6.1.014 OTU 1 seq prokMSA_id:096793 AJ575954 gamma clone T2-PP12-560 2.28.3.6.1.999 poor quality 21 seqs prokMSA_id:040706 AF126149 Thiothrix eikelboomii isolate Ben44 prokMSA_id:045197 AF126150 Thiothrix eikelboomii isolate Ben45 prokMSA_id:031288 AF126151 Thiothrix eikelboomii isolate Ben46 prokMSA_id:039752 AF126153 Thiothrix eikelboomii isolate Ben48 prokMSA_id:046055 AF126154 Thiothrix eikelboomii isolate Ben49 prokMSA_id:040254 AF126155 Thiothrix eikelboomii isolate Ben50 prokMSA_id:048712 AF195463 gamma kpj441rc prokMSA_id:022982 AF207531 Environmental clone CC-5 prokMSA_id:040208 AF207532 Environmental clone CC-7 prokMSA_id:044438 AF298768 PL3 prokMSA_id:070965 AF544963 gamma clone 6-7-7 prokMSA_id:072171 AH001799 Thiothrix nivea JP2 prokMSA_id:062631 AJ504477 isolate P1CN06 prokMSA_id:062576 AJ504551 isolate P1CN97 prokMSA_id:084378 AY253430 clone AC5 prokMSA_id:085517 AY263733 Thiothrix sp. prokMSA_id:085839 AY263734 Thiothrix sp. prokMSA_id:007654 M79435 Thiothrix nivea str. JP2 ATCC 35100. prokMSA_id:025952 M79437 Thiothrix nivea JP2 prokMSA_id:007658 X84578 str. SBR2039. prokMSA_id:007653 X97114 str. TM234. 2.28.3.6.2 CALYPTOGENA_SYMBIONTS_SUBGROUP 149 seqs 2.28.3.6.2.001 OTU 1 seq prokMSA_id:007677 M99445 symbiont of Bathymodiolus thermophilus gill. 2.28.3.6.2.002 OTU 1 seq prokMSA_id:007676 AF035719 unnamed organism. 2.28.3.6.2.003 OTU 1 seq prokMSA_id:007675 L25718 symbiont of Calyptogena elongata gill. 2.28.3.6.2.005 OTU 1 seq prokMSA_id:007673 M99446 symbiont of Calyptogena magnifica. 2.28.3.6.2.006 OTU 6 seqs prokMSA_id:067479 AB073121 Endosymbiont of Calyptogena laubieri prokMSA_id:007669 AF035720 unnamed organism. prokMSA_id:007672 AF035725 unnamed organism. prokMSA_id:007670 AF035726 unnamed organism. prokMSA_id:007671 L25708 symbiont of Calyptogena sp. prokMSA_id:007668 L25710 symbiont of Calyptogena sp. gill. 2.28.3.6.2.008 OTU 7 seqs prokMSA_id:016329 AB044744 Calyptogena fossajaponica gill thioautotophic symbiont prokMSA_id:007674 AF035721 unnamed organism. prokMSA_id:007662 AF035722 unnamed organism. prokMSA_id:007663 AF035723 unnamed organism. prokMSA_id:007664 AF035724 unnamed organism. prokMSA_id:007665 AF035727 unnamed organism. prokMSA_id:088902 AY310507 Endosymbiont of Calyptogena aff. angulata 2.28.3.6.2.009 OTU 1 seq prokMSA_id:007660 L25713 symbiont of Vesicomya chordata gill. 2.28.3.6.2.010 OTU 1 seq prokMSA_id:007659 U29163 symbiont of mussel thioautotrophic gill. 2.28.3.6.2.011 OTU 61 seqs prokMSA_id:090489 AB112451 gamma clone:SUP05-05 prokMSA_id:090298 AB112453 gamma clone:SUP05-10 prokMSA_id:089181 AB112455 gamma clone:SUP05-14 prokMSA_id:088468 AB112457 gamma clone:SUP05-16 prokMSA_id:090005 AB112458 gamma clone:SUP05-18 prokMSA_id:088504 AB112459 gamma clone:SUP05-21 prokMSA_id:090596 AB112462 gamma clone:SUP05-30 prokMSA_id:039907 AF469210 gamma clone 33-FL1B00 prokMSA_id:018127 AF469211 gamma clone 33-FL12B00 prokMSA_id:041696 AF469212 gamma clone 33-FL22B00 prokMSA_id:034160 AF469213 gamma clone 33-FL40B00 prokMSA_id:023115 AF469214 gamma clone 33-FL47B00 prokMSA_id:052777 AF469215 gamma clone 33-FL62B00 prokMSA_id:034589 AF469216 gamma clone 33-FL66B00 prokMSA_id:050275 AF469217 gamma clone 33-FL82B00 prokMSA_id:029460 AF469218 gamma clone 33-FL83B00 prokMSA_id:023088 AF469220 gamma clone 33-FL89B00 prokMSA_id:049484 AF469221 gamma clone 33-FL91B00 prokMSA_id:050046 AF469222 gamma clone 33-FL97B00 prokMSA_id:023354 AF469223 gamma clone 33-FL102B00 prokMSA_id:046761 AF469229 gamma clone 33-FL2B98 prokMSA_id:038975 AF469230 gamma clone 33-FL5B98 prokMSA_id:018571 AF469231 gamma clone 33-FL9B98 prokMSA_id:040812 AF469232 gamma clone 33-FL12B98 prokMSA_id:025986 AF469234 gamma clone 33-FL17B98 prokMSA_id:022891 AF469235 gamma clone 33-FL25B98 prokMSA_id:046153 AF469236 gamma clone 33-FL35B98 prokMSA_id:032870 AF469237 gamma clone 33-FL44B98 prokMSA_id:046590 AF469241 gamma clone 33-FL52B98 prokMSA_id:044750 AF469243 gamma clone 33-FL63B98 prokMSA_id:018865 AF469244 gamma clone 33-FL64B98 prokMSA_id:036689 AF469245 gamma clone 33-FL66B98 prokMSA_id:016626 AF469246 gamma clone 33-FL68B98 prokMSA_id:048985 AF469247 gamma clone 33-FL70B98 prokMSA_id:036644 AF469249 gamma clone 33-FL81B98 prokMSA_id:024544 AF469251 gamma clone 33-FL88B98 prokMSA_id:041129 AF469260 gamma clone 33-FL2B99 prokMSA_id:018087 AF469261 gamma clone 33-FL15B99 prokMSA_id:031201 AF469262 gamma clone 33-FL21B99 prokMSA_id:022712 AF469263 gamma clone 33-FL36B99 prokMSA_id:035070 AF469265 gamma clone 33-FL47B99 prokMSA_id:047298 AF469266 gamma clone 33-FL51B99 prokMSA_id:036342 AF469267 gamma clone 33-FL53B99 prokMSA_id:036533 AF469268 gamma clone 33-FL64B99 prokMSA_id:017566 AF469269 gamma clone 33-FL79B99 prokMSA_id:016631 AF469271 gamma clone 33-FL91B99 prokMSA_id:035705 AF469283 gamma clone 33-PA60B98 prokMSA_id:030349 AF469284 gamma clone 33-PA68B98 prokMSA_id:029342 AF469286 gamma clone 33-PA93B98 prokMSA_id:044271 AF469287 gamma clone 33-PA102B98 prokMSA_id:030307 AF469288 gamma clone 33-PA132B98 prokMSA_id:031291 AF469294 gamma clone 33-PA38B99 prokMSA_id:035868 AF469296 gamma clone 33-PA61B99 prokMSA_id:043768 AF469297 gamma clone 33-PA64B99 prokMSA_id:017349 AF469298 gamma clone 33-PA84B99 prokMSA_id:020420 AF469299 gamma clone 33-PA100B99 prokMSA_id:032623 AF469300 gamma clone 33-PA105B99 prokMSA_id:030765 AF469306 gamma clone 33-PA70B00 prokMSA_id:030555 AF469310 gamma clone CTD8B prokMSA_id:025037 AF469311 gamma clone CTD21B prokMSA_id:035389 AF469312 gamma clone CTD16B 2.28.3.6.2.012 OTU 1 seq prokMSA_id:021943 AB042413 Maorithyas hadalis gill thioautotophic symbiont I ssrRNA 2.28.3.6.2.013 OTU 9 seqs prokMSA_id:045202 AF354606 gamma Arctic96BD-19 prokMSA_id:079347 AF382103 clone ZA2514c prokMSA_id:048160 AF440714 gamma ARCT1-36 prokMSA_id:023424 AF469225 gamma clone 33-FL33B00 prokMSA_id:038335 AF469226 gamma clone 33-FL87B00 prokMSA_id:046275 AF469276 gamma clone 33-FL1B99 prokMSA_id:023269 AF469277 gamma clone 33-FL141B99 prokMSA_id:052014 AF469315 gamma clone CTD60B prokMSA_id:039558 AJ400348 marine ZD0405 2.28.3.6.2.014 OTU 2 seqs prokMSA_id:041094 AB036709 Bathymodiolus septemdierum thioautotrophic gill symbiont prokMSA_id:067478 AB073122 Endosymbiont of Bathymodiolus sp. 2.28.3.6.2.015 OTU 2 seqs prokMSA_id:048115 AF285614 gamma clone Car172f prokMSA_id:079242 AF382104 clone ZA2525c 2.28.3.6.2.016 OTU 1 seq prokMSA_id:050589 AF337875 gold mine D52 2.28.3.6.2.017 OTU 1 seq prokMSA_id:079277 AF382101 clone ZA2329c 2.28.3.6.2.018 OTU 1 seq prokMSA_id:079550 AB099939 sequences clone: IheB2-31 2.28.3.6.2.019 OTU 1 seq prokMSA_id:086367 AY226239 gamma clone BBBB-27 2.28.3.6.2.020 OTU 1 seq prokMSA_id:087934 AY279066 clone CS040 2.28.3.6.2.021 OTU 1 seq prokMSA_id:088638 AY328781 DSSD84 2.28.3.6.2.022 OTU 1 seq prokMSA_id:090283 AY310508 Endosymbiont of Calyptogena packardana 2.28.3.6.2.023 OTU 1 seq prokMSA_id:093922 AY360506 clone BSB23-115m 2.28.3.6.2.024 OTU 1 seq prokMSA_id:094059 AY360497 clone BSB15-115m 2.28.3.6.2.999 poor quality 46 seqs prokMSA_id:090402 AB112452 gamma clone:SUP05-08 prokMSA_id:089201 AB112454 gamma clone:SUP05-12 prokMSA_id:090351 AB112456 gamma clone:SUP05-15 prokMSA_id:088631 AB112460 gamma clone:SUP05-26 prokMSA_id:089888 AB112461 gamma clone:SUP05-28 prokMSA_id:088082 AB112463 gamma clone:SUP05-09 prokMSA_id:043429 AF000647 marine pD-21 prokMSA_id:024159 AF058335 marine pM-101 3' prokMSA_id:023095 AF141501 gamma clone CRE-PA14 prokMSA_id:051792 AF141528 gamma clone CRE-PA50 prokMSA_id:043999 AF245649 gamma NAC60-8 prokMSA_id:051711 AF257290 marine gamma DHB-6 prokMSA_id:029298 AF257291 marine gamma DHB-9 prokMSA_id:068179 AF365554 clone BT49MF4BB6 prokMSA_id:067950 AF365822 clone BT60PA10BB7 prokMSA_id:060671 AF406396 gamma clone AEGEAN_105_27F prokMSA_id:033219 AF469219 gamma clone 33-FL86B00 prokMSA_id:020130 AF469224 gamma clone 33-FL103B00 prokMSA_id:041516 AF469233 gamma clone 33-FL15B98 prokMSA_id:025235 AF469238 gamma clone 33-FL46B98 prokMSA_id:033514 AF469239 gamma clone 33-FL47B98 prokMSA_id:033330 AF469240 gamma clone 33-FL51B98 prokMSA_id:053099 AF469242 gamma clone 33-FL58B98 prokMSA_id:051549 AF469248 gamma clone 33-FL75B98 prokMSA_id:049958 AF469250 gamma clone 33-FL84B98 prokMSA_id:021683 AF469252 gamma clone 33-FL38B98 prokMSA_id:044718 AF469253 gamma clone 33-FL4B98 prokMSA_id:019821 AF469254 gamma clone 33-FL100B98 prokMSA_id:018672 AF469264 gamma clone 33-FL40B99 prokMSA_id:030628 AF469270 gamma clone 33-FL82B99 prokMSA_id:042064 AF469281 gamma clone 33-PA3B98 prokMSA_id:050047 AF469282 gamma clone 33-PA47B98 prokMSA_id:039127 AF469285 gamma clone 33-PA89B98 prokMSA_id:017107 AF469292 gamma clone 33-PA80B98 prokMSA_id:042634 AF469295 gamma clone 33-PA56B99 prokMSA_id:069278 AH005078 marine pN1-54 5' region prokMSA_id:065179 AY095582 gamma pV-12 prokMSA_id:064881 AY095896 gamma pT-439 prokMSA_id:057795 AY098904 clone SBRC_13 prokMSA_id:007678 L25715 symbiont of Calyptogena sp. prokMSA_id:007666 L25716 symbiont of Calyptogena sp. prokMSA_id:007667 L25717 symbiont of Calyptogena sp. prokMSA_id:007679 S79668 symbiont of Calyptogena soyoae. prokMSA_id:020113 U81535 marine p712-20 prokMSA_id:073651 U86481 marine pN1-54 3' region prokMSA_id:007661 Z77503 str. 2-100 C26. 2.28.3.6.3 TMS.FRISIA_SUBGROUP 68 seqs 2.28.3.6.3.003 OTU 1 seq prokMSA_id:007696 AF013975 Thiomicrospira chilensis str. Ch-1. 2.28.3.6.3.004 OTU 1 seq prokMSA_id:007695 AF013978 Thiomicrospira kuenenii str. JB-A1. 2.28.3.6.3.005 OTU 2 seqs prokMSA_id:007693 AF029040 clone SB-3. prokMSA_id:007691 L40811 Thiomicrospira sp. str. MA2-6. 2.28.3.6.3.006 OTU 1 seq prokMSA_id:007692 AF013971 Thiomicrospira SL-1 str. SL-1. 2.28.3.6.3.007 OTU 6 seqs prokMSA_id:007690 AF013972 Thiomicrospira JB-B2 str. JB-B2. prokMSA_id:007687 AF064544 Thiomicrospira L-12 str. L-12. prokMSA_id:007688 AF064545 Thiomicrospira crunogena str. XCL-2. prokMSA_id:007689 AF069959 Thiomicrospira crunogena str. MA-3 ATCC 700270. prokMSA_id:075896 AJ294334 Thiomicrospira crunogena isolate HY-62 prokMSA_id:007683 L01576 Thiomicrospira sp. str. L12. 2.28.3.6.3.008 OTU 2 seqs prokMSA_id:007682 AF082327 Thiomicrospira sp. str. Milos T-1. prokMSA_id:007681 AJ237757 Thiomicrospira Milos-T1 str. Milos-T1. 2.28.3.6.3.009 OTU 1 seq prokMSA_id:007680 D86374 Hydrogenovibrio marinus str. MH-110 JCM 7688 . 2.28.3.6.3.012 OTU 18 seqs prokMSA_id:007699 AF013973 Thiomicrospira Art-3 str. Art-3. prokMSA_id:007697 AF013974 Thiomicrospira frisia str. JB-A2. prokMSA_id:007700 AF082328 Thiomicrospira sp. str. Milos T-2. prokMSA_id:061883 AF449225 gamma clone R76-B23 prokMSA_id:018918 AJ011066 Thiomicrospira sp. Tms-MPN/0-2 mm depth prokMSA_id:033801 AJ011069 Thiomicrospira sp. Tms-MPN/6-8 mm depth prokMSA_id:032289 AJ011074 Thiomicrospira sp. Tms-MPN/30-32 mm depth prokMSA_id:007698 AJ237758 Thiomicrospira Milos-T2 str. Milos-T2. prokMSA_id:052580 AJ237760 Thiomicrospira sp. Tms-MPN/Milos-BI4 gen prokMSA_id:048521 AJ237761 Thiomicrospira sp. Tms-MPN/Milos-BII5 gen prokMSA_id:050122 AJ237762 Thiomicrospira sp. Tms-MPN/Milos-BIII4 prokMSA_id:046375 AJ237763 Thiomicrospira sp. Tms-MPN/Milos-CI1 prokMSA_id:026514 AJ237764 Thiomicrospira sp. Tms-MPN/Milos-CII5 gen prokMSA_id:051039 AJ237765 Thiomicrospira sp. Tms-MPN/Milos-CIII3 prokMSA_id:022798 AJ237766 Thiomicrospira sp. Tms-MPN/Milos-DI3 prokMSA_id:017940 AJ237767 Thiomicrospira sp. Tms-MPN/Milos-DII6 gen prokMSA_id:032506 AJ237768 Thiomicrospira sp. Tms-MPN/Milos-DIII5 prokMSA_id:082186 AY216451 clone KM53 2.28.3.6.3.013 OTU 2 seqs prokMSA_id:019201 AJ011067 Thiomicrospira sp. Tms-MPN/2-4 mm depth prokMSA_id:045730 AJ011075 Thiomicrospira sp. Tms-MPN/38-40 mm depth 2.28.3.6.3.014 OTU 4 seqs prokMSA_id:023549 AJ011068 Thiomicrospira sp. Tms-MPN/4-6 mm depth prokMSA_id:070822 AJ011070 Thiomicrospira sp. Tms-MPN/10-12 mm depth prokMSA_id:072319 AJ011071 Thiomicrospira sp. Tms-MPN/14-16 mm depth prokMSA_id:071356 AJ011072 Thiomicrospira sp. Tms-MPN/22-24 mm depth 2.28.3.6.3.015 OTU 1 seq prokMSA_id:027141 AF354607 gamma Arctic96AD-3 2.28.3.6.3.016 OTU 1 seq prokMSA_id:044251 AF354608 gamma Arctic96AD-9 2.28.3.6.3.017 OTU 2 seqs prokMSA_id:045206 AJ404731 Thiomicrospira sp. SVAL-E prokMSA_id:070821 AJ404732 Thiomicrospira sp. SVAL-D 2.28.3.6.3.018 OTU 4 seqs prokMSA_id:062494 AF513948 Piscirickettsia group clone LA1-B44N prokMSA_id:062496 AF513949 Piscirickettsia group clone LA7-B48N prokMSA_id:075947 AY164391 gamma clone DLIB-12 prokMSA_id:084313 AY226282 gamma clone DBBB-12 2.28.3.6.3.019 OTU 1 seq prokMSA_id:068313 AF361652 clone MN16BT2-14 2.28.3.6.3.020 OTU 1 seq prokMSA_id:072885 AF013977 DS-1 2.28.3.6.3.021 OTU 1 seq prokMSA_id:085436 AY226259 gamma clone BBBB-59 2.28.3.6.3.022 OTU 1 seq prokMSA_id:089916 AY327167 clone ZB84 2.28.3.6.3.023 OTU 1 seq prokMSA_id:096180 AJ575956 gamma clone T2-PP12-590 2.28.3.6.3.999 poor quality 17 seqs prokMSA_id:082671 AB096615 clone: SUIYO-E1 prokMSA_id:084151 AB096618 clone: SUIYO-E5 prokMSA_id:086239 AB096619 clone: SUIYO-E6 prokMSA_id:085160 AB096624 clone: SUIYO-E11 prokMSA_id:086098 AB096625 clone: SUIYO-E12 prokMSA_id:064179 AF477834 prokaryote isolate DGGE Band 45-UIB 8% pond prokMSA_id:036028 AH001798 Thiomicrospira sp. L12 prokMSA_id:074277 AJ237769 unclutured Thiomicrospira ML-1 prokMSA_id:085748 AJ495630 gamma isolate SA-31 prokMSA_id:089075 AJ568005 gamma isolate DGGE-22 prokMSA_id:092307 AY354141 clone pIR3BF02 prokMSA_id:007686 L40810 Thiomicrospira crunogena ATCC 35932 . prokMSA_id:028032 L40812 Thiomicrospira sp. prokMSA_id:007685 L40813 Thiomicrospira sp. prokMSA_id:007684 M79438 Thiomicrospira sp. str. L12. prokMSA_id:043824 M79440 Thiomicrospira sp. L12 prokMSA_id:007694 U46539 clone THIO1. 2.28.3.6.4 TMS.THYASIRAE_SUBGROUP 15 seqs 2.28.3.6.4.003 OTU 9 seqs prokMSA_id:007705 AF013976 Thiomicrospira JB-A1F str. JB-A1F. prokMSA_id:007702 AF016046 Thiomicrospira thyasirae str. TG-2 DSM 5322 . prokMSA_id:062732 AF507825 gamma clone ML617.5J-13 prokMSA_id:062726 AF507826 gamma clone ML617.5J-2 prokMSA_id:062725 AF507827 gamma clone ML617.5J-15 prokMSA_id:050761 AJ011073 Thiomicrospira sp. Tms-MPN/26-28 mm depth prokMSA_id:075723 AJ532694 gamma clone Gitt-KF-166 prokMSA_id:007706 L01478 Thiomicrospira thyasirae str. TG-2 DSM 5322 . prokMSA_id:032161 L01479 Thiobacillus thyasiris 2.28.3.6.4.004 OTU 2 seqs prokMSA_id:007703 AF126548 Thioalcalomicrobium aerophilum str. AL3. prokMSA_id:007704 AF126549 Thioalcalomicrobium sibericum str. AL7. 2.28.3.6.4.999 poor quality 4 seqs prokMSA_id:032939 AF266817 beta clone 4.18A prokMSA_id:073078 AF329082 Thioalkalimicrobium cyclum prokMSA_id:007701 L40809 Thiomicrospira pelophila DSM 1534 . prokMSA_id:007707 X89313 clone 3611. 2.28.3.6.5 MP.MARINA_SUBGROUP 67 seqs 2.28.3.6.5.001 OTU 2 seqs prokMSA_id:007721 X87338 Methylophaga marina ATCC 35842 . prokMSA_id:007716 X95459 Methylophaga marina. 2.28.3.6.5.004 OTU 4 seqs prokMSA_id:080868 AB094945 clone:OHKB13.10 prokMSA_id:007719 X87339 Methylophaga thalassica ATCC 33146 . prokMSA_id:007717 X95460 Methylophaga thalassica. prokMSA_id:007720 X95461 Methylophaga sulfidovorans str. RB-1; 94-792 LMD 95.210 . 2.28.3.6.5.005 OTU 1 seq prokMSA_id:007718 AF159684 clone HstpL93. 2.28.3.6.5.006 OTU 1 seq prokMSA_id:007715 L10936 clone FL5. 2.28.3.6.5.007 OTU 12 seqs prokMSA_id:061177 AB080111 Cycloclasticus sp. A5 prokMSA_id:061170 AB080112 Cycloclasticus sp. E2 prokMSA_id:056290 AB080113 Cycloclasticus sp. E3 prokMSA_id:061169 AB080114 Cycloclasticus sp. H4 prokMSA_id:007709 AF093002 Cycloclasticus G str. G. prokMSA_id:007710 AF093003 Cycloclasticus E str. E. prokMSA_id:007711 AF093004 Cycloclasticus W str. W. prokMSA_id:007712 AF148215 Cycloclasticus oligotrophus. prokMSA_id:019033 AY026915 Cycloclasticus spirillensus prokMSA_id:007714 L34955 Cycloclasticus pugetii str. PS-1 ATCC 51542 . prokMSA_id:007708 U12624 Cycloclasticus pugetii str. PS-1 ATCC 51542 . prokMSA_id:007713 U57920 Cycloclasticus N3-PA321 str. N3-PA321. 2.28.3.6.5.008 OTU 1 seq prokMSA_id:052537 AF424073 gamma MERTZ_2CM_72 2.28.3.6.5.009 OTU 6 seqs prokMSA_id:080439 AB094916 clone:OHKB9.1 prokMSA_id:071631 AJ244760 Methylophaga sp. V4.MS.17 prokMSA_id:071369 AJ244761 Methylophaga sp. V4.ME.29 prokMSA_id:061960 AJ244762 Methylophaga sp. V4.MO.19 prokMSA_id:067403 AJ456963 Methylophaga sp. TCg-14 isolate TCg-14 prokMSA_id:066676 AY090119 Piscirickettsia group clone IAFDn39 2.28.3.6.5.010 OTU 1 seq prokMSA_id:066020 AF384373 Methylophaga alcalica 2.28.3.6.5.011 OTU 1 seq prokMSA_id:077580 AY171346 clone s10 2.28.3.6.5.012 OTU 1 seq prokMSA_id:079978 AF468260 clone ARKDMS-3 2.28.3.6.5.013 OTU 1 seq prokMSA_id:080637 AF468294 clone ARKIA-123 2.28.3.6.5.014 OTU 1 seq prokMSA_id:081639 AB086228 Dibenzofuran-degrading DBF-MAK 2.28.3.6.5.015 OTU 1 seq prokMSA_id:086185 AY128533 Methylophaga buryatica 2.28.3.6.5.016 OTU 3 seqs prokMSA_id:092936 AY354129 clone pIR3BD10 prokMSA_id:092744 AY354175 clone pIR3BB07 prokMSA_id:092422 AY354180 clone pIR3BE09 2.28.3.6.5.017 OTU 3 seqs prokMSA_id:097463 AY375062 clone B92 prokMSA_id:096205 AY375075 clone B47 prokMSA_id:097200 AY375084 clone B132 2.28.3.6.5.999 poor quality 28 seqs prokMSA_id:036998 AF000274 marine prokMSA_id:041584 AF000275 marine prokMSA_id:034232 AF000280 marine prokMSA_id:020601 AF000283 marine prokMSA_id:035720 AF211282 Methylophaga CE57 prokMSA_id:019605 AF432322 gamma 0%N-26d-61 prokMSA_id:021957 AF432329 gamma 4%N-0d-73 prokMSA_id:067305 AF494506 Alteromonadaceae clone GOBB3-B04-10-1 prokMSA_id:058828 AF534241 gamma clone gamma cg2 prokMSA_id:058826 AF534244 gamma clone gamma cg5 prokMSA_id:058824 AF534245 gamma clone gamma cg6 prokMSA_id:058818 AF534253 gamma clone gamma cg8 prokMSA_id:058819 AF534254 gamma clone gamma cg9 prokMSA_id:058817 AF534255 gamma clone gamma cg10 prokMSA_id:058814 AF534256 gamma clone gamma cg11 prokMSA_id:056582 AF534257 gamma clone gamma cg12 prokMSA_id:055701 AF534258 gamma clone gamma cg13 prokMSA_id:084653 AJ495636 gamma isolate SA-37 prokMSA_id:085689 AJ495638 gamma isolate SA-42 prokMSA_id:087172 AJ561148 gamma clone ANT-AC 12 prokMSA_id:087248 AJ561150 gamma clone ANT-AC 21 prokMSA_id:087655 AJ561152 gamma clone ANT-AC 10 prokMSA_id:066674 AY090116 Piscirickettsia group clone IAFDn2 prokMSA_id:066675 AY090117 Piscirickettsia group clone IAFDn7 prokMSA_id:066672 AY090118 Piscirickettsia group clone IAFDn28 prokMSA_id:065005 AY095847 gamma ARCT2-51 prokMSA_id:091291 AY258608 DGGE Band 10 prokMSA_id:091587 AY258609 DGGE Band 11 2.28.3.6.6 FNC.TULARENSIS_SUBGROUP 45 seqs 2.28.3.6.6.003 OTU 17 seqs prokMSA_id:007749 AB001522 unnamed organism. prokMSA_id:007747 AF001077 Francisella DAS str. DAS. prokMSA_id:007748 AF143093 Francisella tularensis str. FTMC1. prokMSA_id:007745 AF166256 unnamed organism. prokMSA_id:007746 AF166257 unnamed organism. prokMSA_id:026984 AF206675 Tilapia parasite TPT-541 prokMSA_id:028092 AF227312 Francisella tularensis biovar palearctica prokMSA_id:025636 AF227313 Francisella tularensis biovar palearctica prokMSA_id:036885 AF227314 Francisella tularensis biovar palearctica prokMSA_id:087566 AF385857 Cf. Francisella sp. CYH-2002 ; -23S intergenic spacer complete ; and 23S prokMSA_id:084287 AY243027 Francisella philomiragia strain 2669 prokMSA_id:082787 AY243028 Francisella tularensis strain 3523 prokMSA_id:007731 L26085 Francisella philomiragia ATCC 25015 . prokMSA_id:007744 L26086 Francisella tularensis. prokMSA_id:007757 Z21931 Francisella tularensis subsp. tularensis str. lvs ATCC 6223 . prokMSA_id:007752 Z21932 Francisella tularensis str. SCHU FSC 043. prokMSA_id:007738 Z21933 Francisella philomiragia ATCC 25017. 2.28.3.6.6.006 OTU 5 seqs prokMSA_id:007734 U36915 Piscirickettsia salmonis str. ATL-4-91. prokMSA_id:007735 U36940 Piscirickettsia salmonis str. EM-90. prokMSA_id:007733 U36941 Piscirickettsia salmonis str. LF-89. prokMSA_id:007736 U36942 Piscirickettsia salmonis str. NOR-92. prokMSA_id:071348 U55015 Piscirickettsia salmonis complete 2.28.3.6.6.999 poor quality 23 seqs prokMSA_id:023230 AF283890 Piscirickettsia sp. Yaquina Bay prokMSA_id:007729 L26084 Francisella novicida str. Utah 11 ATCC 15482 . prokMSA_id:007722 M21292 Wolbachia persica ATCC VR-331 . prokMSA_id:007725 X60783 Piscirickettsia salmonis. prokMSA_id:007726 X98069 Francisella tularensis str. Fx2. prokMSA_id:007727 X98071 Francisella tularensis str. Fx1. prokMSA_id:007737 Z22888 Francisella tularensis FSC 033. prokMSA_id:007723 Z22890 Francisella philomiragia CDC E6588. prokMSA_id:007754 Z22892 Francisella tularensis FSC 147. prokMSA_id:007724 Z22894 Francisella tularensis CCUG 17299. prokMSA_id:007741 Z22896 Francisella tularensis FSC 046. prokMSA_id:007756 Z22898 Francisella tularensis FSC 041. prokMSA_id:007742 Z22900 Francisella philomiragia ATCC 25015 . prokMSA_id:007751 Z22902 Francisella tularensis FSC 044. prokMSA_id:007750 Z22904 Francisella tularensis FSC 054. prokMSA_id:007728 Z22906 Francisella tularensis FSC 022. prokMSA_id:007743 Z22908 Francisella tularensis FSC 042. prokMSA_id:007730 Z22910 Francisella tularensis SBL R45. prokMSA_id:007740 Z22912 Francisella tularensis subsp. tularensis str. lvs ATCC 6223 . prokMSA_id:007732 Z22914 Francisella tularensis FSC 090. prokMSA_id:007739 Z22916 Francisella novicida str. Utah 11 ATCC 15482 . prokMSA_id:007755 Z22918 Francisella tularensis FSC 151. prokMSA_id:007753 Z22922 Francisella tularensis FSC 026. 2.28.3.7 DICHELOBACTER_GROUP 32 seqs 2.28.3.7.001 OTU 2 seqs prokMSA_id:007769 M35016 Dichelobacter nodosus str. 198A ATCC 27521. prokMSA_id:007768 X54267 Dichelobacter nodosus. 2.28.3.7.002 OTU 2 seqs prokMSA_id:007766 AF144697 Cardiobacterium A str. AB 2167. prokMSA_id:007763 M35014 Cardiobacterium hominis ATCC 15826 . 2.28.3.7.003 OTU 2 seqs prokMSA_id:007765 AF144696 Cardiobacterium B str. AB 2168. prokMSA_id:065940 AF506987 Cardiobacterium valvarum 2.28.3.7.004 OTU 1 seq prokMSA_id:007764 U87826 clone v1. 2.28.3.7.005 OTU 5 seqs prokMSA_id:019960 AF226850 Thiobacillus sp. MS02 prokMSA_id:062497 AF513944 Chromatiaceae clone LAS-B37N prokMSA_id:076987 AJ294337 Halothiobacillus hydrothermalis isolate HY-66 prokMSA_id:007758 M90662 Thiobacillus hydrothermalis str. R3 DSM 7121 . prokMSA_id:007761 U58020 Thiobacillus halophilus. 2.28.3.7.006 OTU 1 seq prokMSA_id:007760 AF154088 clone BPC028. 2.28.3.7.007 OTU 3 seqs prokMSA_id:044985 AF173169 Thiobacillus neapolitanus DSM 581 prokMSA_id:066599 AY096035 Halothiobacillus sp. WJ18 prokMSA_id:007759 X97534 Thiobacillus sp. str. W5. 2.28.3.7.008 OTU 1 seq prokMSA_id:019288 AF170419 Halothiobacillus kellyi 2.28.3.7.009 OTU 1 seq prokMSA_id:066337 AY099401 Halothiobacillus sp. RA13 2.28.3.7.010 OTU 1 seq prokMSA_id:078828 AJ536870 gamma clone JG30a-KF-21 2.28.3.7.011 OTU 1 seq prokMSA_id:083036 AJ495607 gamma isolate SA-7 2.28.3.7.012 OTU 1 seq prokMSA_id:084768 AY221039 clone CCD9 2.28.3.7.013 OTU 1 seq prokMSA_id:091367 AY340824 clone SR_FBR_E29 2.28.3.7.014 OTU 1 seq prokMSA_id:091901 AY345518 clone W1-B23 2.28.3.7.999 poor quality 9 seqs prokMSA_id:064034 AB087337 clone:F28 prokMSA_id:044091 AF213054 Thiobacillus sp. 1C prokMSA_id:035668 AF332266 clone C12-32 prokMSA_id:072361 AH001797 Thiobacillus neapolitanus prokMSA_id:069956 AJ247267 Suttonella indologenes prokMSA_id:079681 AY193016 clone SRE2 prokMSA_id:007767 M35015 Suttonella indologenes ATCC 25869 . prokMSA_id:007762 M79418 Thiobacillus neapolitanus str. X. prokMSA_id:072997 M79420 Thiobacillus neapolitanus 2.28.3.8 XANTHOMONAS_GROUP 1127 seqs 2.28.3.8.1 NV.RAMOSA_SUBGROUP 114 seqs 2.28.3.8.1.001 OTU 10 seqs prokMSA_id:007774 AB021322 str. rJ4. prokMSA_id:007775 AB021323 str. rJ5. prokMSA_id:078132 AB074618 gamma clone:APe4_14 prokMSA_id:033115 AB074678 Gamma D-N1-4A1 prokMSA_id:048854 AB074679 Gamma D-N1-4A2 prokMSA_id:030525 AB074686 Gamma D-N3-3B prokMSA_id:007776 AJ001271 str. LX1. prokMSA_id:086561 AY226285 gamma clone DBBB-28 prokMSA_id:094102 AY363244 Hydrocarbophaga effusa strain AP102 prokMSA_id:094021 AY363245 Hydrocarbophaga effusa strain AP103 2.28.3.8.1.002 OTU 12 seqs prokMSA_id:077626 AB074620 gamma clone:APe4_56 prokMSA_id:007771 AJ001010 Nevskia ramosa str. Soe1 DSM 11499 . prokMSA_id:007773 AJ001011 Nevskia ramosa str. OL1. prokMSA_id:007772 AJ001343 Nevskia ramosa. prokMSA_id:065470 AY102312 clone a13105 prokMSA_id:065468 AY102316 clone a13109 prokMSA_id:065459 AY102326 clone a13128 prokMSA_id:065456 AY102329 clone a13133 prokMSA_id:065452 AY102333 clone a13140 prokMSA_id:089270 AY328560 HOClCi11 prokMSA_id:090389 AY328616 HOClCi67 prokMSA_id:088766 AY328622 HOClCi73 2.28.3.8.1.003 OTU 1 seq prokMSA_id:017673 AJ313020 gamma MN 154.3 isolate MN 154.3 2.28.3.8.1.004 OTU 1 seq prokMSA_id:019213 Z93991 2.28.3.8.1.005 OTU 1 seq prokMSA_id:024744 AJ301567 gamma GR-296.I.104 2.28.3.8.1.006 OTU 3 seqs prokMSA_id:046403 AJ292675 WD284 clone WD284 prokMSA_id:032703 AJ292677 WD273 clone WD273 prokMSA_id:029007 AJ295469 rape rhizosphere wr0008 2.28.3.8.1.007 OTU 2 seqs prokMSA_id:029157 AH010206 Lake Michigan sediment LMBA45 prokMSA_id:032297 AY012533 Lake Michigan sediment LMBA45 2.28.3.8.1.008 OTU 3 seqs prokMSA_id:051220 AJ292674 WD280 clone WD280 prokMSA_id:029870 AJ292679 WD2117 clone WD2117 prokMSA_id:074634 AJ292681 WD288 clone WD288 2.28.3.8.1.009 OTU 1 seq prokMSA_id:036572 AF422577 clone t002 2.28.3.8.1.010 OTU 1 seq prokMSA_id:037497 AJ318170 gamma clone BIrii5 2.28.3.8.1.011 OTU 2 seqs prokMSA_id:049267 AF422596 clone t022 prokMSA_id:049006 AF422611 clone t041 2.28.3.8.1.012 OTU 1 seq prokMSA_id:051888 AF286040 Saltmarsh clone LCP-5 2.28.3.8.1.013 OTU 1 seq prokMSA_id:075633 AJ518786 gamma clone JG37-AG-94 2.28.3.8.1.014 OTU 1 seq prokMSA_id:076705 AJ534626 gamma clone JG36-TzT-191 2.28.3.8.1.015 OTU 1 seq prokMSA_id:078320 AB074619 gamma clone:APe4_38 2.28.3.8.1.016 OTU 1 seq prokMSA_id:078370 AB074648 gamma clone:APe2_11 2.28.3.8.1.017 OTU 1 seq prokMSA_id:079411 AY187338 clone csbio160352 2.28.3.8.1.018 OTU 1 seq prokMSA_id:082757 AY221046 clone CCM14b 2.28.3.8.1.019 OTU 1 seq prokMSA_id:091109 AY345522 clone W1-A17 2.28.3.8.1.999 poor quality 69 seqs prokMSA_id:028069 AB058674 clone:Loihi---10 prokMSA_id:077252 AB075122 clone:KSR9 prokMSA_id:064005 AB087369 clone:CF49 prokMSA_id:032371 AF078195 Grassland soil clone saf1_123 prokMSA_id:073963 AF165524 GFD1 prokMSA_id:066136 AF226215 maize root Zmrc173 prokMSA_id:023122 AF364939 clone clL46b prokMSA_id:068121 AF365615 clone BT60MF7BE12 prokMSA_id:030758 AF428695 clone CRP99-41 prokMSA_id:029544 AF428697 clone CRP99-43 prokMSA_id:040611 AF429138 clone CR99-24-28 prokMSA_id:025123 AF465671 DGGE band YNPRH-B13 prokMSA_id:048305 AJ005539 beta clone 109 prokMSA_id:071642 AJ233552 clone WR122 prokMSA_id:037114 AJ233553 clone WR124 prokMSA_id:041511 AJ233554 clone WR127 prokMSA_id:030573 AJ233557 clone WR1119 prokMSA_id:043801 AJ233558 clone WR1133 prokMSA_id:019099 AJ292884 WR821 clone WR821 prokMSA_id:024494 AJ292885 WR828 clone WR828 prokMSA_id:028268 AJ292887 WR850 clone WR850 prokMSA_id:027916 AJ292888 WR868 clone WR868 prokMSA_id:033302 AJ292889 WR871 clone WR871 prokMSA_id:035038 AJ292890 WR879 clone WR879 prokMSA_id:029648 AJ292892 WR8118 clone WR8118 prokMSA_id:051447 AJ292894 WR8145 clone WR8145 prokMSA_id:030347 AJ292895 WR8158 clone WR8158 prokMSA_id:031126 AJ292897 WR8165 clone WR8165 prokMSA_id:047735 AJ292898 WR8166 clone WR8166 prokMSA_id:034991 AJ292899 WR8168 clone WR8168 prokMSA_id:051228 AJ292900 WR8131 clone WR8131 prokMSA_id:051419 AJ292901 WR8147 clone WR8147 prokMSA_id:032911 AJ292902 WR8159 clone WR8159 prokMSA_id:031754 AJ292903 WR817 clone WR817 prokMSA_id:032991 AJ292904 WR836 clone WR836 prokMSA_id:042822 AJ292905 WR8101 clone WR8101 prokMSA_id:072762 AJ295503 rape rhizosphere wr0047 prokMSA_id:037319 AJ295506 rape rhizosphere wr0052 prokMSA_id:016949 AJ295535 rape rhizosphere wr0095 prokMSA_id:030764 AJ295542 rape rhizosphere wr0102 prokMSA_id:021410 AJ421218 clone C5-K12 prokMSA_id:076428 AJ428134 isolate band ns-b1 prokMSA_id:077062 AJ428155 isolate band ao-b6 prokMSA_id:063882 AJ493395 clone m6-3 prokMSA_id:088319 AJ577103 Nevskia sp. clone 105 prokMSA_id:017515 AY012534 Lake Michigan sediment LM4B12 prokMSA_id:067219 AY090650 Methylobacter sp. clone C22 prokMSA_id:065444 AY102343 clone a13159 prokMSA_id:060882 AY135889 clone SG1-133 prokMSA_id:056192 AY143697 clone Lu8 prokMSA_id:074514 AY143770 Methylobacter sp. clone Lur72 prokMSA_id:077248 AY157094 gamma isolate WB-33 prokMSA_id:077162 AY157118 gamma isolate HS-27 prokMSA_id:075938 AY159160 MF_isolate_17 prokMSA_id:078156 AY171305 clone s79 prokMSA_id:078860 AY177779 isolate 6i08 prokMSA_id:081793 AY216724 soil clone 23 prokMSA_id:081670 AY216725 soil clone 24 prokMSA_id:081115 AY216726 soil clone 25 prokMSA_id:081284 AY216727 soil clone 26 prokMSA_id:081223 AY216734 soil clone 33a prokMSA_id:081856 AY216735 soil clone 33b prokMSA_id:086667 AY251203 gamma clone 1B_2 prokMSA_id:095651 AY268469 gamma clone 12 prokMSA_id:085139 AY271761 Nevskia sp. prokMSA_id:086249 AY271776 Pseudomonas sp. prokMSA_id:087830 AY293509 gamma clone FL12A07 prokMSA_id:097243 AY391654 soil clone M38 prokMSA_id:007770 X91458 clone A35o. 2.28.3.8.2 RHN.LINDANICLASTICUS_SUBGROUP 214 seqs 2.28.3.8.2.001 OTU 1 seq prokMSA_id:007781 AF142853 clone BURTON-35. 2.28.3.8.2.002 OTU 3 seqs prokMSA_id:094319 AB120123 Frateuria aurantia prokMSA_id:095115 AB120124 Frateuria aurantia prokMSA_id:007780 AJ010481 Frateuria aurantia IFO 3245 . 2.28.3.8.2.003 OTU 2 seqs prokMSA_id:007778 AF047645 clone TRA5-3. prokMSA_id:066606 AY096032 Gamma WJ2 2.28.3.8.2.004 OTU 5 seqs prokMSA_id:026239 AB074730 Gamma S-N1-6B prokMSA_id:039014 AB074734 Gamma S-N2-25A prokMSA_id:007777 AF039167 Rhodanobacter lindaniclasticus str. RP5557 LMG 18385 . prokMSA_id:067341 AF494542 Rhodanobacter sp. BPC1 prokMSA_id:068655 AY081991 clone KRA30-20 2.28.3.8.2.005 OTU 1 seq prokMSA_id:016767 AF312222 Pietermaritzburg Y17-8 2.28.3.8.2.006 OTU 4 seqs prokMSA_id:020263 AF308875 Arsenic resistant soil 7-03 prokMSA_id:071415 AJ311653 Fulvimonas soli strain LMG 19981T prokMSA_id:017177 AY049941 Gamma A40-1 prokMSA_id:055908 AY135638 Gamma RLUH-1 2.28.3.8.2.007 OTU 1 seq prokMSA_id:021240 AJ318180 gamma clone BIsii4 2.28.3.8.2.008 OTU 1 seq prokMSA_id:026701 AJ318114 gamma clone BIci4 2.28.3.8.2.009 OTU 1 seq prokMSA_id:028808 AF312216 Pietermaritzburg Y14-2 2.28.3.8.2.010 OTU 1 seq prokMSA_id:033864 AJ318117 clone BIfci40 2.28.3.8.2.011 OTU 4 seqs prokMSA_id:078230 AB074598 gamma clone:APe2_13 prokMSA_id:077578 AB074599 gamma clone:APe2_19 prokMSA_id:083501 AF499898 clone ABLCf21 prokMSA_id:034580 AJ318146 gamma clone BIhiii13 2.28.3.8.2.012 OTU 1 seq prokMSA_id:043741 AJ296563 GR-Sh1-148 clone GR-Sh1-148 2.28.3.8.2.013 OTU 1 seq prokMSA_id:050142 AJ307936 mRNA clone sipK9 2.28.3.8.2.014 OTU 1 seq prokMSA_id:050262 AF376025 Frateuria sp. NO-16 2.28.3.8.2.015 OTU 1 seq prokMSA_id:051075 AJ229188 from anoxic bulk soil clone BSV26 2.28.3.8.2.016 OTU 1 seq prokMSA_id:061178 AY080925 clone EOH3 2.28.3.8.2.017 OTU 1 seq prokMSA_id:061264 AY044035 clone S58P.09WL 2.28.3.8.2.018 OTU 1 seq prokMSA_id:063325 AF523890 clone RCP1-10 2.28.3.8.2.019 OTU 1 seq prokMSA_id:064019 AB087356 clone:F19 2.28.3.8.2.020 OTU 1 seq prokMSA_id:064073 AB087290 clone:CF10 2.28.3.8.2.021 OTU 2 seqs prokMSA_id:066864 AY096148 clone F1-38 prokMSA_id:066832 AY096180 clone F2-58 2.28.3.8.2.022 OTU 1 seq prokMSA_id:066844 AY096170 clone F2-38 2.28.3.8.2.023 OTU 1 seq prokMSA_id:074992 AY154583 earthworm cast clone c226 2.28.3.8.2.024 OTU 2 seqs prokMSA_id:078698 AJ536859 gamma clone JG30-KF-C4 prokMSA_id:078732 AJ536871 gamma clone JG30a-KF-75 2.28.3.8.2.025 OTU 1 seq prokMSA_id:079105 AY188327 clone KD8-68 2.28.3.8.2.027 OTU 1 seq prokMSA_id:079298 AY188317 clone KD5-51 2.28.3.8.2.028 OTU 1 seq prokMSA_id:079300 AY187329 clone csbio160308 2.28.3.8.2.029 OTU 1 seq prokMSA_id:079383 AB100608 Swingsiella fulva 2.28.3.8.2.032 OTU 1 seq prokMSA_id:080066 AY188309 clone KD4-116 2.28.3.8.2.033 OTU 1 seq prokMSA_id:081089 AY218694 clone KD8-80 2.28.3.8.2.034 OTU 1 seq prokMSA_id:081091 AY218744 clone KD5-94 2.28.3.8.2.035 OTU 1 seq prokMSA_id:081095 AY218671 clone KD9-60 2.28.3.8.2.036 OTU 6 seqs prokMSA_id:081602 AY218645 clone KD4-70 prokMSA_id:081613 AY218714 clone KD7-78 prokMSA_id:081151 AY218721 clone KD7-95 prokMSA_id:081893 AY218725 clone KD5-108 prokMSA_id:082032 AY218741 clone KD5-86 prokMSA_id:081290 AY218763 clone KD6-55 2.28.3.8.2.037 OTU 1 seq prokMSA_id:081191 AY218693 clone KD8-79 2.28.3.8.2.038 OTU 1 seq prokMSA_id:081192 AY218680 clone KD8-112 2.28.3.8.2.039 OTU 3 seqs prokMSA_id:081247 AY218729 clone KD5-12 prokMSA_id:081357 AY218737 clone KD5-36 prokMSA_id:081982 AY218747 clone KD6-106 2.28.3.8.2.040 OTU 1 seq prokMSA_id:081358 AY218713 clone KD7-52 2.28.3.8.2.041 OTU 1 seq prokMSA_id:081396 AY218698 clone KD8-97 2.28.3.8.2.042 OTU 1 seq prokMSA_id:081426 AY218570 clone KD2-123 2.28.3.8.2.043 OTU 1 seq prokMSA_id:081447 AY218766 clone KD6-7 2.28.3.8.2.044 OTU 1 seq prokMSA_id:081454 AY218702 clone KD7-7-110 2.28.3.8.2.046 OTU 14 seqs prokMSA_id:079852 AY188295 clone KD1-149 prokMSA_id:079780 AY188308 clone KD3-82 prokMSA_id:079255 AY188318 clone KD5-58 prokMSA_id:081716 AY218652 clone KD9-118 prokMSA_id:082264 AY218655 clone KD9-127 prokMSA_id:081116 AY218663 clone KD9-21 prokMSA_id:081473 AY218666 clone KD9-31 prokMSA_id:081461 AY218667 clone KD9-36 prokMSA_id:082308 AY218675 clone KD9-70 prokMSA_id:082402 AY218686 clone KD8-16 prokMSA_id:082446 AY218712 clone KD7-5 prokMSA_id:081363 AY218719 clone KD7-89 prokMSA_id:081132 AY218756 clone KD6-20 prokMSA_id:081196 AY218771 clone KD6-83 2.28.3.8.2.047 OTU 4 seqs prokMSA_id:082101 AY218606 clone KD3-139 prokMSA_id:081522 AY218670 clone KD9-56 prokMSA_id:081676 AY218723 clone KD5-100 prokMSA_id:081880 AY218745 clone KD6-1 2.28.3.8.2.048 OTU 1 seq prokMSA_id:081595 AY218575 clone KD2-145 2.28.3.8.2.049 OTU 1 seq prokMSA_id:081697 AY218757 clone KD6-37 2.28.3.8.2.050 OTU 1 seq prokMSA_id:081832 AY218660 clone KD9-164 2.28.3.8.2.051 OTU 1 seq prokMSA_id:081914 AY218646 clone KD4-75 2.28.3.8.2.052 OTU 1 seq prokMSA_id:081936 AY218717 clone KD7-86 2.28.3.8.2.053 OTU 2 seqs prokMSA_id:082401 AY218722 clone KD7-97 prokMSA_id:081941 AY218760 clone KD6-45 2.28.3.8.2.054 OTU 1 seq prokMSA_id:081943 AY218715 clone KD7-80 2.28.3.8.2.055 OTU 1 seq prokMSA_id:082003 AY218636 clone KD4-51 2.28.3.8.2.056 OTU 2 seqs prokMSA_id:082380 AY218664 clone KD9-22 prokMSA_id:082127 AY218720 clone KD7-93 2.28.3.8.2.057 OTU 1 seq prokMSA_id:082171 AY218759 clone KD6-44 2.28.3.8.2.058 OTU 1 seq prokMSA_id:082232 AY218701 clone KD7-103 2.28.3.8.2.059 OTU 1 seq prokMSA_id:082238 AY218740 clone KD5-73 2.28.3.8.2.060 OTU 1 seq prokMSA_id:082320 AY218596 clone KD2-87 2.28.3.8.2.061 OTU 1 seq prokMSA_id:082335 AY218728 clone KD5-115 2.28.3.8.2.062 OTU 1 seq prokMSA_id:082379 AY218632 clone KD4-34 2.28.3.8.2.063 OTU 1 seq prokMSA_id:082392 AY218654 clone KD9-126 2.28.3.8.2.064 OTU 1 seq prokMSA_id:082442 AY218608 clone KD3-39 2.28.3.8.2.065 OTU 1 seq prokMSA_id:082450 AY218610 clone KD3-55 2.28.3.8.2.066 OTU 1 seq prokMSA_id:082491 AJ557833 clone B6 2.28.3.8.2.067 OTU 1 seq prokMSA_id:094291 AJ583181 gamma- clone S15B-MN15 2.28.3.8.2.999 poor quality 111 seqs prokMSA_id:023569 AB011748 gamma strain: G14023 prokMSA_id:042858 AB011749 gamma strain: G22022 prokMSA_id:040290 AB011750 gamma strain: G24019 prokMSA_id:035734 AB011751 gamma strain: G23017 prokMSA_id:076555 AB075050 clone:KCS5 prokMSA_id:075065 AB075058 clone:KCS20 prokMSA_id:074889 AB075071 clone:KCRS16 prokMSA_id:076682 AB075073 clone:KCRS18 prokMSA_id:077103 AB075078 clone:KCR7 prokMSA_id:074884 AB075079 clone:KCR8 prokMSA_id:075151 AB075083 clone:KCR12 prokMSA_id:075628 AB075088 clone:KCR18 prokMSA_id:075172 AB075106 clone:KSRS5 prokMSA_id:074994 AB075118 clone:KSR4 prokMSA_id:076077 AB075124 clone:KSR12 prokMSA_id:076161 AB075126 clone:KSR15 prokMSA_id:064059 AB087307 clone:CF29 prokMSA_id:064056 AB087309 clone:CF33 prokMSA_id:064039 AB087325 clone:CF74 prokMSA_id:056030 AB087345 clone:F45 prokMSA_id:064023 AB087348 clone:F51 prokMSA_id:085705 AB107172 Gamma W-2007 parital prokMSA_id:069204 AF083561 Amazonian soil M16 prokMSA_id:052323 AF083563 Amazonian soil M19b prokMSA_id:040358 AF083569 Amazonian soil M34 prokMSA_id:046738 AF083572 Amazonian soil M43 prokMSA_id:044925 AF083579 Amazonian soil M54 prokMSA_id:029632 AF083592 Amazonian soil P21 prokMSA_id:051348 AF083603 Amazonian soil P40 prokMSA_id:034030 AF083606 Amazonian soil P48 prokMSA_id:032009 AF090542 microbium BHB6 prokMSA_id:044927 AF114718 Alpha P14 prokMSA_id:038491 AF226174 Maize root ZmrIs9 prokMSA_id:047948 AF226204 maize root Zmrc150 prokMSA_id:070224 AF229452 Cimanggu media isolate 88 prokMSA_id:051259 AF240130 Grassland soil TSA-2 prokMSA_id:047130 AF245340 SA25 prokMSA_id:031548 AF247489 Frateuria sp. A6.4 prokMSA_id:031970 AF250415 Rhodanobacter sp. D46 prokMSA_id:028022 AF250416 Rhodanobacter sp. D47 prokMSA_id:042679 AF280941 clone JS1 prokMSA_id:038822 AF280945 clone JS5 prokMSA_id:039915 AF280946 clone JS6 prokMSA_id:033689 AF280951 clone JS11 prokMSA_id:051959 AF280952 clone JS12 prokMSA_id:043969 AF280958 clone JS19 prokMSA_id:048436 AF280964 clone JS25 prokMSA_id:043439 AF292242 Rhodanobacter sp. Sy prokMSA_id:018778 AF353293 Tui2-30 prokMSA_id:017088 AF388318 clone Ac40 prokMSA_id:052683 AF388360 clone Ac53 prokMSA_id:029475 AF392657 clone TCH4 prokMSA_id:045215 AF406661 Frateuria sp. A12 strain A12 prokMSA_id:045682 AF406662 Frateuria sp. A13 strain A13 prokMSA_id:049777 AF428911 clone CR98-35-29 prokMSA_id:076267 AF431330 gamma clone N11.102WL prokMSA_id:075708 AF431333 gamma clone N12.06WL prokMSA_id:075691 AF431339 gamma clone C17.50WL prokMSA_id:075197 AF431342 gamma clone S21.27WL prokMSA_id:075384 AF431343 gamma clone S21.38WL prokMSA_id:075239 AF431344 gamma clone S21.57WL prokMSA_id:075408 AF431346 gamma clone S22.20WL prokMSA_id:076780 AF431359 gamma clone S36.36SM prokMSA_id:076678 AF431360 gamma clone S36.43SM prokMSA_id:075112 AF431361 gamma clone S36.58SM prokMSA_id:075588 AF431362 gamma clone S36.59SM prokMSA_id:075544 AF431363 gamma clone S37.37SM prokMSA_id:076086 AF431369 gamma clone N42.07PG prokMSA_id:074949 AF431371 gamma clone N42.28PG prokMSA_id:075960 AF431380 gamma clone C47.21PG prokMSA_id:075264 AF431384 gamma clone S51.35PG prokMSA_id:066662 AF432235 Ellin405 prokMSA_id:066641 AF432256 Ellin433 prokMSA_id:017214 AF446336 FL04B02 prokMSA_id:077428 AF477827 gamma clone AGCO23 prokMSA_id:055754 AF526527 gamma clone MB10gamma-k4 prokMSA_id:062839 AF526528 gamma clone MB10gamma-k3 prokMSA_id:062840 AF526529 gamma clone MB10gamma-k6 prokMSA_id:062837 AF526531 gamma clone MB10gamma-k2 prokMSA_id:037795 AJ000921 sp. isolate K27 prokMSA_id:033494 AJ232877 clone LRE9 prokMSA_id:022207 AJ292893 WR8123 clone WR8123 prokMSA_id:018856 AJ292896 WR8161 clone WR8161 prokMSA_id:074090 AJ421112 clone C11-K7 prokMSA_id:077262 AJ428144 isolate band mw-b8 prokMSA_id:076247 AJ428145 isolate band mw-b9 prokMSA_id:057013 AJ518551 clone Qui4P1-77 prokMSA_id:056536 AY043604 Forest soil 1S2.C9 prokMSA_id:061531 AY043684 gamma clone NOW2.14WL prokMSA_id:061265 AY044032 clone S58P.15WL prokMSA_id:061261 AY044036 clone N59P.01SM prokMSA_id:056403 AY044038 clone N59P.05SM prokMSA_id:061259 AY044040 clone S61P.25SM prokMSA_id:055989 AY044044 clone S61P.09SM prokMSA_id:061253 AY044047 clone S64P.24PG prokMSA_id:061249 AY044048 clone S64P.31PG prokMSA_id:040314 AY048903 L11-15hw17c prokMSA_id:066856 AY096158 clone F2-18 prokMSA_id:063047 AY122296 Denitrifying IA1 prokMSA_id:063045 AY122297 Denitrifying JA1 prokMSA_id:063037 AY122309 Denitrifying JA2 prokMSA_id:074583 AY122310 Denitrifying LA2 prokMSA_id:077424 AY138998 gamma pBC16S3-27 prokMSA_id:077470 AY139001 gamma pIF16S1-2 prokMSA_id:069430 AY144234 gamma clone LTUG00356 prokMSA_id:055957 AY144243 gamma clone LTUG01856 prokMSA_id:069141 AY144255 gamma clone LTUG07456 prokMSA_id:087671 AY261389 clone RFLP U2 prokMSA_id:085494 AY267517 Rhodanobacter sp. 3CBB prokMSA_id:094638 AY369144 clone F-OTU4 prokMSA_id:007779 X97116 str. TM85. 2.28.3.8.3 ENVIRONMENTAL_CLONE_PAD61 1 seq 2.28.3.8.3.999 poor quality 1 seq prokMSA_id:007782 D26248 soil from paddy field clone PAD61. 2.28.3.8.4 LYB.ANTIBIOTICUS_SUBGROUP 172 seqs 2.28.3.8.4.001 OTU 1 seq prokMSA_id:007793 AJ012228 Luteimonas mephitis str. B1953/27.1. 2.28.3.8.4.002 OTU 2 seqs prokMSA_id:007792 AF139997 Xanthomonas ML-122 str. ML-122. prokMSA_id:050378 AF140004 Xanthomonas sp. ML-168b 2.28.3.8.4.003 OTU 1 seq prokMSA_id:007791 AB021333 str. rJ15. 2.28.3.8.4.006 OTU 16 seqs prokMSA_id:007788 AB016762 Xanthomonas sp. str. AK. prokMSA_id:007790 AB019582 Lysobacter antibioticus str. Ly a2 DSM 2044 . prokMSA_id:073870 AB054969 Xanthomonas sp. 1018 prokMSA_id:061184 AB083480 Lysobacter sp. IB-9374 prokMSA_id:097259 AB121774 Lysobacter sp. Shinshu-th3 prokMSA_id:007786 AF012541 str. ES-1. prokMSA_id:043727 AF320570 Xanthomonas sp. prokMSA_id:019780 AF332712 clone UASB_brew_B12 prokMSA_id:029914 AF332713 clone UASB_brew_B113 prokMSA_id:017521 AF472556 Lysobacter sp. XL1 prokMSA_id:052059 AJ298291 Lysobacter enzymogenes strain DSM 2043T prokMSA_id:027494 AY074793 Lysobacter sp. C3 prokMSA_id:007784 U15111 Pele's Vents clone PVB_3 PVB_5. prokMSA_id:007783 U15112 Pele's Vents clone PVB_25. prokMSA_id:007789 U15113 Pele's Vents clone PVB_47. prokMSA_id:007785 U89956 str. N4-7. 2.28.3.8.4.007 OTU 3 seqs prokMSA_id:033015 AF445723 gamma clone SM2D10 prokMSA_id:018696 AF445726 gamma clone SM2E10 prokMSA_id:043322 AF446341 FL08C01 2.28.3.8.4.009 OTU 1 seq prokMSA_id:020839 AY039429 Soil S65D1 2.28.3.8.4.010 OTU 2 seqs prokMSA_id:074091 AJ300185 Thermomonas haemolytica strain A50-7-3 prokMSA_id:072649 AJ300186 Thermomonas sp. B50-7-1 strain B50-7-1 2.28.3.8.4.011 OTU 1 seq prokMSA_id:059175 AY136098 Beta KIN190 2.28.3.8.4.012 OTU 2 seqs prokMSA_id:044041 AF445686 gamma clone SM1E08 prokMSA_id:025970 AF445725 gamma clone SM2E06 2.28.3.8.4.013 OTU 1 seq prokMSA_id:035183 AF332715 clone UASB_brew_B36 2.28.3.8.4.014 OTU 2 seqs prokMSA_id:039919 AF445682 gamma clone SM1E04 prokMSA_id:039084 AF445683 gamma clone SM1E05 2.28.3.8.4.015 OTU 1 seq prokMSA_id:039751 AF337881 gold mine D26 2.28.3.8.4.016 OTU 1 seq prokMSA_id:040248 AF422601 clone t027 2.28.3.8.4.017 OTU 1 seq prokMSA_id:040443 AF418945 clone HTB10 2.28.3.8.4.019 OTU 2 seqs prokMSA_id:064057 AB087313 clone:CF38 prokMSA_id:064041 AB087329 clone:CF88 2.28.3.8.4.021 OTU 4 seqs prokMSA_id:060986 AF531538 clone a13161 prokMSA_id:065469 AY102313 clone a13106 prokMSA_id:065466 AY102319 clone a13112 prokMSA_id:065454 AY102331 clone a13138 2.28.3.8.4.025 OTU 1 seq prokMSA_id:067728 AB062159 clone:pBSB4.20 2.28.3.8.4.026 OTU 1 seq prokMSA_id:072899 AF545649 candidate division BD clone BDfull1 2.28.3.8.4.027 OTU 1 seq prokMSA_id:074443 AJ318204 gamma clone BIyi3 2.28.3.8.4.028 OTU 1 seq prokMSA_id:075156 AY159136 MF_clone_25 2.28.3.8.4.029 OTU 1 seq prokMSA_id:075281 AY154497 earthworm intestine clone wi95 2.28.3.8.4.030 OTU 1 seq prokMSA_id:075646 AY159137 MF_clone_36 2.28.3.8.4.031 OTU 1 seq prokMSA_id:075877 AJ534675 gamma clone S15A-MN135 2.28.3.8.4.032 OTU 13 seqs prokMSA_id:077719 AB074615 gamma clone:APe9_10 prokMSA_id:066237 AF508105 Thermomonas haemolytica isolate N22 prokMSA_id:066239 AF508106 Thermomonas haemolytica isolate N4 prokMSA_id:066236 AF508107 Thermomonas haemolytica isolate S2 prokMSA_id:066235 AF508108 Thermomonas haemolytica isolate S5 prokMSA_id:066231 AF508109 Thermomonas haemolytica isolate S6 prokMSA_id:066232 AF508110 Thermomonas haemolytica isolate TG15 prokMSA_id:066233 AF508111 Thermomonas haemolytica isolate TJ7 prokMSA_id:059535 AF538773 Enrichment culture LB-P clone LB-P prokMSA_id:076350 AJ519987 Thermomonas fusca strain LMG 21738 prokMSA_id:076111 AJ519988 Thermomonas fusca strain LMG 21739 prokMSA_id:076525 AJ519989 Thermomonas brevis strain LMG 21746T prokMSA_id:065559 AY095402 yard-trimming-compost clone S-31 2.28.3.8.4.033 OTU 1 seq prokMSA_id:076807 AJ532711 gamma clone JG34-KF-118 2.28.3.8.4.034 OTU 1 seq prokMSA_id:078314 AB098585 Luteimonas sp. TUT1017 2.28.3.8.4.035 OTU 1 seq prokMSA_id:078390 AY144585 soil clone Dpcom44 2.28.3.8.4.036 OTU 1 seq prokMSA_id:078734 AJ536883 clone JG30-KF-CM58 2.28.3.8.4.037 OTU 1 seq prokMSA_id:079627 AJ539234 Thermomonas sp. FLA17 strain FLA17 2.28.3.8.4.038 OTU 1 seq prokMSA_id:079785 AY188294 clone KD1-135 2.28.3.8.4.039 OTU 1 seq prokMSA_id:080337 AJ539230 Shineria sp. 010793816 strain 0107 93816 2.28.3.8.4.040 OTU 1 seq prokMSA_id:080900 AJ538058 clone OF40 2.28.3.8.4.041 OTU 1 seq prokMSA_id:081039 AY218573 clone KD2-14 2.28.3.8.4.042 OTU 1 seq prokMSA_id:081045 AY218689 clone KD8-62 2.28.3.8.4.043 OTU 1 seq prokMSA_id:081084 AY218697 clone KD8-88 2.28.3.8.4.044 OTU 3 seqs prokMSA_id:081488 AY218735 clone KD5-24 prokMSA_id:081711 AY218742 clone KD5-9 prokMSA_id:082208 AY218750 clone KD6-121 2.28.3.8.4.045 OTU 1 seq prokMSA_id:081663 AY218631 clone KD4-32 2.28.3.8.4.046 OTU 1 seq prokMSA_id:081958 AY218588 clone KD2-63 2.28.3.8.4.047 OTU 1 seq prokMSA_id:081962 AY218617 clone KD3-79 2.28.3.8.4.048 OTU 1 seq prokMSA_id:082881 AY242724 soil clone Tc120-G04 2.28.3.8.4.049 OTU 1 seq prokMSA_id:086511 AY230768 'Smarlab BioMol-2301083' 2.28.3.8.4.050 OTU 1 seq prokMSA_id:089021 AJ577107 Xanthomonas sp. clone 112 2.28.3.8.4.051 OTU 1 seq prokMSA_id:091520 AF542054 Thermomonas hydrothermalis 2.28.3.8.4.052 OTU 1 seq prokMSA_id:093610 AJ581595 gamma clone KCM-B-90 2.28.3.8.4.053 OTU 1 seq prokMSA_id:093932 AJ582198 gamma- clone Gitt-GS-126 2.28.3.8.4.999 poor quality 88 seqs prokMSA_id:047866 AB013435 Gamma YB12 prokMSA_id:028581 AB022475 KC516 prokMSA_id:047729 AB054970 Lysobacter sp. 1170 prokMSA_id:064068 AB087295 clone:CF17 prokMSA_id:064045 AB087324 clone:CF73 prokMSA_id:056117 AB087331 clone:F3 prokMSA_id:064035 AB087336 clone:F26 prokMSA_id:084767 AB097992 Gamma ANRB9-2 prokMSA_id:042567 AF078423 Grassland soil clone sl3_616 prokMSA_id:023450 AF090541 BHA7 prokMSA_id:037399 AF128712 soil C0138 prokMSA_id:043086 AF128762 Soil is115 prokMSA_id:072168 AF176844 24-D-degrading 010 prokMSA_id:045992 AF176856 24-D-degrading 030 prokMSA_id:017227 AF210719 clone SSB3 prokMSA_id:018752 AF240151 TSA-14.1 prokMSA_id:050863 AF358007 clone LO13.15 prokMSA_id:036465 AF384191 Luteimonas sp. S2 prokMSA_id:038811 AF384192 Luteimonas sp. TJ7 prokMSA_id:032116 AF384201 Thermomonas sp. N4 prokMSA_id:043904 AF384202 Thermomonas sp. N22 prokMSA_id:027480 AF390923 clone ICBBE7 prokMSA_id:030712 AF392659 clone P2D7 prokMSA_id:022218 AF392664 clone CRF4 prokMSA_id:020826 AF392666 clone CDH6 prokMSA_id:022897 AF392672 clone LEG4 prokMSA_id:067754 AF423369 gamma isolate DGGE band D4 prokMSA_id:067748 AF423374 beta isolate DGGE band W3 prokMSA_id:067743 AF423376 beta isolate DGGE band GC2 prokMSA_id:025338 AF429237 clone CR99-2-51 prokMSA_id:076841 AF431383 gamma clone S51.14PG prokMSA_id:055675 AF494505 gamma clone GOBB3-B07-4-2 prokMSA_id:063685 AF522920 clone 1g7 prokMSA_id:071129 AF523338 clone P4-39 prokMSA_id:079061 AF547025 307 prokMSA_id:078757 AF547054 451 prokMSA_id:035584 AJ225354 species ; clone 47 prokMSA_id:025171 AJ244351 Riz1075 prokMSA_id:048997 AJ289973 isolate CBS4-12 prokMSA_id:072587 AJ296318 Thermomonas sp. B50-8-1 prokMSA_id:072256 AJ296319 Thermomonas sp. D50-7-1 prokMSA_id:021105 AJ308272 clone F99_10a prokMSA_id:044992 AJ308280 clone F99_19S clone F99_17 prokMSA_id:074831 AJ400563 clone G4-K18 prokMSA_id:036143 AJ421158 clone C6-K21 prokMSA_id:047789 AJ421183 clone C1-K12 prokMSA_id:050227 AJ431323 clone 2_7 prokMSA_id:079944 AJ437138 clone lf10-01 prokMSA_id:043409 AJ437411 clone 1_34_103 prokMSA_id:062609 AJ504510 isolate P1CN43 prokMSA_id:055531 AJ504519 isolate P1CN58 prokMSA_id:062597 AJ504522 isolate P1CN61 prokMSA_id:055237 AJ518649 clone Sai2P2-11 prokMSA_id:088680 AJ575068 Xanthomonas sp. Twm31 strain Twm31 prokMSA_id:093401 AJ581967 Lysobacter antibioticus strain 3R3-1 prokMSA_id:093284 AJ582569 clone G2 prokMSA_id:093502 AJ582599 clone M80-09 prokMSA_id:061271 AY044026 clone S9P.02WL prokMSA_id:061270 AY044027 clone S9P.05WL prokMSA_id:061269 AY044029 clone N56P.04WL prokMSA_id:061263 AY044033 clone S58P.06WL prokMSA_id:074804 AY044039 clone S61P.01SM prokMSA_id:061257 AY044041 clone S61P.26SM prokMSA_id:061256 AY044045 clone S64P.10PG prokMSA_id:033396 AY048188 Xanthomonas sp. prokMSA_id:065447 AY102339 clone a13153 prokMSA_id:074711 AY143694 gamma protoebacterium clone Lu3 prokMSA_id:073829 AY143703 gamma clone Lu21 prokMSA_id:071145 AY143707 gamma clone Lu53 prokMSA_id:056438 AY143757 gamma clone Lur15 prokMSA_id:070025 AY144235 gamma clone LTUG00414 prokMSA_id:069500 AY144241 gamma clone LTUG01656 prokMSA_id:071103 AY144251 gamma clone LTUG04156 prokMSA_id:055853 AY144257 gamma clone LTUG07814 prokMSA_id:069262 AY144258 gamma clone LTUG07956 prokMSA_id:072678 AY144259 gamma clone LTUG08356 prokMSA_id:072440 AY144263 gamma clone LTUG09614 prokMSA_id:069398 AY144264 gamma clone LTUG10614 prokMSA_id:081744 AY187498 clone SC105 prokMSA_id:079899 AY190154 Lysobacter antibioticus strain S5 prokMSA_id:079890 AY190159 Lysobacter antibioticus strain S16 prokMSA_id:080127 AY192306 gamma clone P1-1A prokMSA_id:082824 AY217471 gamma clone WCB4 prokMSA_id:085895 AY251204 gamma clone 1B_3 prokMSA_id:082907 AY261823 clone OTU ADB-13 prokMSA_id:083249 AY267505 Lysobacter sp. 2CBAB prokMSA_id:007787 U68594 clone M7. prokMSA_id:035392 Z82967 sp. clone group T10BC 2.28.3.8.5 STE.MALTOPHILIA_SUBGROUP 293 seqs 2.28.3.8.5.008 OTU 1 seq prokMSA_id:007805 AF170732 Stenotrophomonas QSSC1-10 str. QSSC1-10. 2.28.3.8.5.009 OTU 1 seq prokMSA_id:034452 AF323265 Gram negative W5P-1 2.28.3.8.5.010 OTU 1 seq prokMSA_id:041278 AF361024 Stenotrophomonas sp. NAP6 2.28.3.8.5.011 OTU 1 seq prokMSA_id:044870 AJ318183 gamma clone BIsiii14 2.28.3.8.5.012 OTU 1 seq prokMSA_id:055885 AY100574 clone cvf75037 2.28.3.8.5.013 OTU 1 seq prokMSA_id:057481 AF447796 gamma clone S16 2.28.3.8.5.015 OTU 126 seqs prokMSA_id:007826 AB008509 Stenotrophomonas maltophilia ATCC 13637 . prokMSA_id:007803 AB021405 Pseudomonas hibiscicola ATCC 19867. prokMSA_id:043705 AB031625 gamma TIHP302-39 prokMSA_id:018015 AB031662 gamma TIHP368-77 prokMSA_id:058519 AB072706 clone:pHAuB-3 prokMSA_id:078291 AB074643 gamma clone:APe4_53 prokMSA_id:007800 AF017749 Stenotrophomonas maltophilia str. N4-15. prokMSA_id:042284 AF058381 clone MT3 prokMSA_id:007810 AF068008 Stenotrophomonas maltophilia str. VUN 10 010. prokMSA_id:007811 AF068009 Stenotrophomonas maltophilia str. VUN 10 012. prokMSA_id:007816 AF098637 Stenotrophomonas maltophilia str. BL. prokMSA_id:025594 AF100731 Stenotrophomonas maltophilia isolate VUN10001 prokMSA_id:071585 AF100732 Stenotrophomonas maltophilia isolate VUN10002 prokMSA_id:070857 AF100733 Stenotrophomonas maltophilia isolate VUN10003 prokMSA_id:018402 AF100734 Stenotrophomonas maltophilia isolate VUN10075 prokMSA_id:034396 AF100735 Stenotrophomonas maltophilia isolate VUN10035 prokMSA_id:007828 AF137357 Stenotrophomonas maltophilia str. VUN10075. prokMSA_id:021566 AF156709 Stenotrophomonas sp. BO prokMSA_id:073166 AF181569 Stenotrophomonas sp. JRL-2 prokMSA_id:041359 AF186705 Stenotrophomonas maltophilia prokMSA_id:074268 AF214643 Nitrogen-fixing MAGDE3 prokMSA_id:038163 AF273079 Stenotrophomonas acidaminiphila prokMSA_id:043406 AF273080 Stenotrophomonas acidaminiphila prokMSA_id:036431 AF309081 Stenotrophomonas sp. DB1 prokMSA_id:071852 AF364937 clone clL72b prokMSA_id:017961 AF368754 Stenotrophomonas sp. 3A3C prokMSA_id:021167 AF375850 Stenotrophomonas sp. E102 prokMSA_id:027006 AF385546 Xanthomonas sp. oral clone AY088 prokMSA_id:052203 AF388906 Stenotrophomonas sp. clone GOBB3-CL259 prokMSA_id:022269 AF388907 Stenotrophomonas maltophilia clone GOBB3-CL245 prokMSA_id:017139 AF390080 Stenotrophomonas maltophilia strain Sea-8 prokMSA_id:053734 AF390081 Stenotrophomonas maltophilia strain Sea-11 prokMSA_id:043441 AF394168 Blackwater bioreactor BW3 prokMSA_id:022089 AF408331 Stenotrophomonas sp. clone KL-59-7-5 prokMSA_id:038887 AF417866 Stenotrophomonas maltophilia prokMSA_id:057483 AF447795 gamma clone S11 prokMSA_id:057479 AF447797 gamma clone S21 prokMSA_id:048681 AF481735 Stenotrophomonas sp. clone 4CB3 prokMSA_id:067603 AF493061 Stenotrophomonas sp. clone GOBB3-CL242 prokMSA_id:066324 AF506993 Br-z23 prokMSA_id:066325 AF506994 Br-z16 prokMSA_id:066323 AF506995 Br-z21 prokMSA_id:060387 AF513452 Xanthomonas group LA37 prokMSA_id:062418 AF529092 gamma clone FTL14 prokMSA_id:062420 AF529094 gamma clone FTL204 prokMSA_id:062387 AF529130 gamma clone FTLpost107 prokMSA_id:055295 AF529326 gamma clone CLi132 prokMSA_id:061818 AF529349 gamma clone CLs71 prokMSA_id:061805 AF529355 gamma clone CLs90 prokMSA_id:060353 AF534190 clone Caf5 prokMSA_id:060330 AF534211 clone Phe2 prokMSA_id:007798 AJ002806 Stenotrophomonas sp. str. R2. prokMSA_id:007799 AJ002807 Stenotrophomonas sp. str. R3. prokMSA_id:007827 AJ002814 Stenotrophomonas sp. str. S3. prokMSA_id:007812 AJ012229 Stenotrophomonas nitritireducens str. L2. prokMSA_id:007813 AJ012230 Stenotrophomonas nitritireducens str. B1910/29.1. prokMSA_id:007807 AJ131114 Stenotrophomonas maltophilia LMG 957. prokMSA_id:007808 AJ131115 Stenotrophomonas maltophilia LMG 10991. prokMSA_id:007809 AJ131116 Stenotrophomonas maltophilia LMG 981. prokMSA_id:007829 AJ131780 Stenotrophomonas maltophilia LMG 10851. prokMSA_id:007817 AJ131782 Stenotrophomonas maltophilia LMG 10873. prokMSA_id:007830 AJ131784 Stenotrophomonas maltophilia LMG 10877. prokMSA_id:007819 AJ131903 Stenotrophomonas maltophilia LMG 10879. prokMSA_id:007822 AJ131907 Stenotrophomonas maltophilia LMG 10989. prokMSA_id:007832 AJ131909 Stenotrophomonas maltophilia LMG 11003. prokMSA_id:007835 AJ131915 Stenotrophomonas maltophilia LMG 10888. prokMSA_id:074547 AJ243605 Stenotrophomonas sp. prokMSA_id:043807 AJ293464 Stenotrophomonas maltophilia strain e-p3 prokMSA_id:045548 AJ293465 Stenotrophomonas maltophilia strain e-p19 prokMSA_id:039173 AJ293466 Stenotrophomonas maltophilia strain e-p20 prokMSA_id:043218 AJ293467 Stenotrophomonas maltophilia strain c5 prokMSA_id:043546 AJ293468 Stenotrophomonas maltophilia strain c6 prokMSA_id:050487 AJ293469 Stenotrophomonas maltophilia strain c20 prokMSA_id:020877 AJ293470 Stenotrophomonas maltophilia strain e-a21 prokMSA_id:052247 AJ293471 Stenotrophomonas maltophilia strain e-a1 prokMSA_id:046966 AJ293472 Stenotrophomonas maltophilia strain e-a23 prokMSA_id:074521 AJ293473 Stenotrophomonas maltophilia strain e-p13 prokMSA_id:023220 AJ293474 Stenotrophomonas maltophilia strain e-a22 prokMSA_id:049849 AJ295421 Rape rhizosphere tsb011 prokMSA_id:034131 AJ295671 Stenotrophomonas maltophilia clone IrT-JG14-32 prokMSA_id:047527 AJ295672 Stenotrophomonas maltophilia clone IrT-JG14-28 prokMSA_id:018200 AJ295673 Stenotrophomonas maltophilia clone IrT-JG14-12 prokMSA_id:040651 AJ300772 Stenotrophomonas sp. LMG 19833 strain LMG 19833 prokMSA_id:071314 AJ306833 Stenotrophomonas maltophilia isolate ON2 prokMSA_id:022707 AJ318138 gamma clone BIgi7 prokMSA_id:063468 AJ495804 Stenotrophomonas sp. P1A prokMSA_id:056184 AJ508700 Stenotrophomonas acidaminiphila isolate MBRG 4.12 prokMSA_id:075751 AJ518813 Stenotrophomonas maltophila isolate B9 prokMSA_id:078802 AJ534843 Stenotrophomonas sp. DW100 isolate DW100 prokMSA_id:093673 AJ551156 Pseudomonas sp. An18 isolate An18 prokMSA_id:046165 AY008335 Stenotrophomonas sp. DB4 prokMSA_id:022708 AY037661 earthworm cast clone C001 prokMSA_id:045132 AY038620 clone GL182.22 prokMSA_id:045466 AY038621 clone GL184.24 prokMSA_id:049109 AY038622 clone GL184.21 prokMSA_id:053196 AY038623 clone GL184.31 prokMSA_id:039908 AY038624 clone GL184.10 prokMSA_id:038863 AY038625 clone GL178.2 prokMSA_id:018889 AY038626 clone GL182.12 prokMSA_id:020575 AY038627 clone GL182.13 prokMSA_id:036460 AY038628 clone GL178.11 prokMSA_id:016875 AY038629 clone GL178.1 prokMSA_id:048759 AY038722 clone TAF-B86 prokMSA_id:051923 AY050496 Stenotrophomonas maltophilia SB5 prokMSA_id:050679 AY053488 AT425_EubD3 prokMSA_id:068652 AY081992 clone KRA30-21 prokMSA_id:060449 AY131216 Stenotrophomonas sp. Fa6 prokMSA_id:059922 AY133070 gamma clone ccs2170 prokMSA_id:075485 AY162942 clone ZB-Z9 prokMSA_id:082333 AY169417 Stenotrophomonas maltophilia clone 1-24 prokMSA_id:081159 AY169434 Stenotrophomonas maltophilia clone 15 prokMSA_id:082453 AY179327 Stenotrophomonas sp. S1 prokMSA_id:081214 AY192032 gamma clone G17-GM4R prokMSA_id:088987 AY277550 Stenotrophomonas maltophilia strain CSC13-6 prokMSA_id:089608 AY297751 Stenotrophomonas maltophilia isolate Imc prokMSA_id:088622 AY297754 Acinetobacter calcoaceticus isolate Imb prokMSA_id:091653 AY345506 clone W4A-D02 prokMSA_id:091305 AY345544 clone LWSR-59 prokMSA_id:093101 AY360340 Stenotrophomonas maltophilia prokMSA_id:094799 AY373393 clone A100 complete prokMSA_id:095940 AY379973 Stenotrophomonas sp. AHL 1 prokMSA_id:007795 U62646 Stenotrophomonas africae str. MGB. prokMSA_id:007797 X95923 Stenotrophomonas maltophilia LMG 958 . prokMSA_id:007814 X95924 Stenotrophomonas maltophilia LMG 11087. prokMSA_id:007815 X95925 Stenotrophomonas maltophilia LMG 11114. prokMSA_id:007806 Y13836 Stenotrophomonas sp. 2.28.3.8.5.016 OTU 1 seq prokMSA_id:064026 AB087352 clone:F11 2.28.3.8.5.017 OTU 1 seq prokMSA_id:064620 AF467345 beta clone 2513 2.28.3.8.5.018 OTU 1 seq prokMSA_id:064621 AF467342 beta clone 1609 2.28.3.8.5.019 OTU 1 seq prokMSA_id:066491 AY100599 clone cvf58179 2.28.3.8.5.020 OTU 1 seq prokMSA_id:066522 AY100558 clone cvf71122 2.28.3.8.5.021 OTU 1 seq prokMSA_id:067602 AF493062 Stenotrophomonas sp. clone GOBB3-CL244 2.28.3.8.5.022 OTU 1 seq prokMSA_id:074751 AF445671 gamma clone SM1D02 2.28.3.8.5.023 OTU 1 seq prokMSA_id:081218 AY080994 Stenotrophomonas sp. clone ckl32 2.28.3.8.5.024 OTU 1 seq prokMSA_id:081450 AY218690 clone KD8-72 2.28.3.8.5.025 OTU 1 seq prokMSA_id:091531 AY345536 clone LWS-P3 2.28.3.8.5.026 OTU 1 seq prokMSA_id:091874 AY345564 clone T7-2-1E03 2.28.3.8.5.027 OTU 1 seq prokMSA_id:093199 AY367034 Stenotrophomonas maltophilia isolate Cs3-2 2.28.3.8.5.028 OTU 1 seq prokMSA_id:094070 AJ581599 gamma clone KCM-B-26 2.28.3.8.5.999 poor quality 148 seqs prokMSA_id:007801 AB021392 Pseudomonas pictorum ATCC 23328. prokMSA_id:007802 AB021404 Pseudomonas geniculata ATCC 19374. prokMSA_id:007804 AB021406 Pseudomonas beteli ATCC 19861. prokMSA_id:038284 AB022303 Obligately oligotrophic POC-114 prokMSA_id:074686 AB022304 Obligately oligotrophic POC-115 prokMSA_id:047857 AB031592 gamma TIHP302-04 prokMSA_id:023601 AB031605 gamma TIHP302-20a prokMSA_id:021886 AB045277 Stenotrophomonas sp. DFK5 prokMSA_id:048652 AB054968 Stenotrophomonas sp. 1264b prokMSA_id:091089 AB101567 Thermomonas sp. GF24 prokMSA_id:050195 AF025327 Stenotrophomonas maltophilia prokMSA_id:045964 AF078366 Grassland soil clone sl2_505 prokMSA_id:070544 AF104281 122 prokMSA_id:038230 AF106617 Stenotrophomonas maltophilia prokMSA_id:032103 AF107071 Stenotrophomonas maltophilia prokMSA_id:016695 AF107074 Stenotrophomonas sp. BL210-1 prokMSA_id:043968 AF107078 Stenotrophomonas sp. BL244-3 prokMSA_id:035724 AF107079 Stenotrophomonas sp. BL224-5 prokMSA_id:027370 AF143449 Aquatic RUB_MacConkey_K33 prokMSA_id:039200 AF143454 Aquatic STS_EndoC_11 prokMSA_id:070050 AF216515 gamma SkelCos6-19 prokMSA_id:024118 AF216517 gamma HetTri46-12 prokMSA_id:021499 AF226177 Maize root ZmrIs13A prokMSA_id:049233 AF240139 Grassland soil TSA-13 prokMSA_id:023226 AF240147 TSA-5.1 prokMSA_id:026831 AF250401 Stenotrophomonas sp. C19 prokMSA_id:035311 AF280434 Stenotrophomonas detusculanense prokMSA_id:034348 AF280948 clone JS8 prokMSA_id:027233 AF296230 SE-43 prokMSA_id:024530 AF296231 SE-77 prokMSA_id:031623 AF296232 SE-95 prokMSA_id:037792 AF322031 Stenotrophomonas maltophilia prokMSA_id:036690 AF357192 Gamma C79 prokMSA_id:033327 AF376313 ckncm080-A32.A8 prokMSA_id:038221 AF379029 clone EV15 prokMSA_id:023195 AF390955 clone TFBMH2 prokMSA_id:037840 AF406680 Stenotrophomonas maltophilia strain B10 prokMSA_id:037527 AF406684 Stenotrophomonas maltophilia strain B16 prokMSA_id:038935 AF423271 soil clone 51-2 prokMSA_id:020971 AF441303 PAH-contaminated sludge PB-8 prokMSA_id:018307 AF441304 PAH-contaminated sludge PB-9 prokMSA_id:018583 AF448273 clone DJAT-442 prokMSA_id:017762 AF451844 Stenotrophomonas maltophilia strain dK prokMSA_id:046860 AF473990 gamma 68-60 prokMSA_id:067129 AF499322 clone JCL4-68 prokMSA_id:067126 AF499323 clone JCL4-82 prokMSA_id:067109 AF499347 clone JCL9-60 prokMSA_id:055373 AF499348 clone JCL9-65 prokMSA_id:067074 AF499390 clone JCL1-37 prokMSA_id:067073 AF499391 clone JCL1-34 prokMSA_id:067072 AF499392 clone JCL1-22 prokMSA_id:067071 AF499393 clone JCL1-24 prokMSA_id:067061 AF499407 clone BL-99 prokMSA_id:083631 AF499891 clone ABLC16 prokMSA_id:082862 AF499892 clone ABLC39 prokMSA_id:085584 AF499893 clone ABLC59 prokMSA_id:079159 AF533951 Stenotrophomonas maltophilia clone SM14R prokMSA_id:079123 AF533952 Stenotrophomonas maltophilia clone SM14U prokMSA_id:079497 AF533953 Stenotrophomonas maltophilia clone SM22U prokMSA_id:079091 AF533955 Stenotrophomonas maltophilia clone SM6U prokMSA_id:079145 AF533956 Stenotrophomonas maltophilia clone SM7R prokMSA_id:079261 AF533957 Stenotrophomonas maltophilia clone SM7U prokMSA_id:079403 AF533959 Stenotrophomonas maltophilia clone SM8U prokMSA_id:079306 AF533960 Stenotrophomonas maltophilia clone SM22R prokMSA_id:069471 AF544918 gamma clone 2-6-3 prokMSA_id:007818 AJ131783 Stenotrophomonas maltophilia LMG 10874. prokMSA_id:007831 AJ131904 Stenotrophomonas maltophilia LMG 10881. prokMSA_id:007820 AJ131905 Stenotrophomonas maltophilia LMG 10882. prokMSA_id:007821 AJ131906 Stenotrophomonas maltophilia LMG 10883. prokMSA_id:072690 AJ131908 Stenotrophomonas maltophilia strain LMG 10992 prokMSA_id:007833 AJ131910 Stenotrophomonas maltophilia LMG 11089. prokMSA_id:007823 AJ131913 Stenotrophomonas maltophilia LMG 980. prokMSA_id:007834 AJ131914 Stenotrophomonas maltophilia LMG 10853. prokMSA_id:007824 AJ131916 Stenotrophomonas maltophilia LMG 11002. prokMSA_id:007825 AJ131918 Stenotrophomonas maltophilia LMG 6608. prokMSA_id:007836 AJ131919 Stenotrophomonas maltophilia LMG 978. prokMSA_id:029741 AJ243945 Stenotrophomonas sp. prokMSA_id:028896 AJ295352 Rape rhizosphere cse008 prokMSA_id:041089 AJ295360 Rape rhizosphere cse035 prokMSA_id:071905 AJ295364 Rape rhizosphere cse044 prokMSA_id:035893 AJ295371 Rape rhizosphere cse062 prokMSA_id:045614 AJ295373 Rape rhizosphere cse070 prokMSA_id:043184 AJ295382 Rape rhizosphere cse096 prokMSA_id:035048 AJ295389 Rape rhizosphere M9020 prokMSA_id:070195 AJ295394 Rape rhizosphere M9032 prokMSA_id:043105 AJ295429 Rape rhizosphere tsb026 prokMSA_id:026873 AJ295430 Rape rhizosphere tsb028 prokMSA_id:037643 AJ295431 Rape rhizosphere tsb029 prokMSA_id:032306 AJ295451 Rape rhizosphere tsb070 prokMSA_id:033890 AJ296592 DGGE band PSBAC-12 prokMSA_id:076279 AJ428149 isolate band i-b6 prokMSA_id:075460 AJ428182 isolate band ao-b4 prokMSA_id:088287 AJ491778 Stenotrophomonas sp. prokMSA_id:059271 AJ508701 Stenotrophomonas acidaminiphila isolate MBRG 4.11 prokMSA_id:055783 AJ508702 Stenotrophomonas maltophilia isolate MBRG 4.17 prokMSA_id:056638 AJ508703 Stenotrophomonas maltophilia isolate MBRG 4.10 prokMSA_id:079004 AJ534860 Stenotrophomonas sp. DW112a3 isolate DW112a3 prokMSA_id:089771 AJ550284 Stenotrophomonas sp. TK45 isolate TK45 prokMSA_id:088693 AJ550286 Stenotrophomonas sp. TK59 isolate TK59 prokMSA_id:090628 AJ550289 Stenotrophomonas sp. TK64 isolate TK64 prokMSA_id:089984 AJ550295 Stenotrophomonas sp. TK49 isolate TK49 prokMSA_id:089895 AJ550296 Stenotrophomonas sp. TK50 isolate TK50 prokMSA_id:017135 AY005812 Stenotrophomonas maltophilia prokMSA_id:044645 AY039428 Soil S64M2 prokMSA_id:072239 AY040346 Stenotrophomonas maltophilia strain LMG 20563 prokMSA_id:069179 AY040354 Stenotrophomonas maltophilia strain LMG 20575 prokMSA_id:074418 AY040364 Stenotrophomonas maltophilia strain LMG 20596 prokMSA_id:067498 AY092075 Stenotrophomonas maltophilia strain 47 prokMSA_id:067494 AY092076 Stenotrophomonas maltophilia strain 492 prokMSA_id:065542 AY095420 yard-trimming-compost clone S-53 prokMSA_id:064977 AY116503 Stenotrophomonas sp. prokMSA_id:063031 AY122319 Denitrifying KC1 prokMSA_id:076859 AY159154 MF_isolate_10 prokMSA_id:077838 AY171915 Stenotrophomonas acidaminiphila strain BF-6 prokMSA_id:077832 AY171916 Stenotrophomonas acidaminiphila strain BF-24 prokMSA_id:078349 AY171917 Stenotrophomonas acidaminiphila strain BF-28 prokMSA_id:078764 AY178980 Stenotrophomonas maltophilia prokMSA_id:089035 AY198387 Furfural-degrading C7 prokMSA_id:085275 AY267503 Stenotrophomonas sp. 4CBAI prokMSA_id:083597 AY267504 Stenotrophomonas sp. 4CBAI2 prokMSA_id:087692 AY269212 Pseudomonas boreopolis strain TERI 1002 prokMSA_id:087037 AY269222 Pseudomonas sp. TERI 1012 prokMSA_id:087653 AY269223 Pseudomonas sp. TERI 1013 prokMSA_id:087064 AY269230 Pseudomonas boreopolis strain TERI 1023 prokMSA_id:084685 AY271771 Stenotrophomonas sp. prokMSA_id:085765 AY271772 Stenotrophomonas sp. prokMSA_id:084224 AY271773 Stenotrophomonas sp. prokMSA_id:084871 AY271774 Stenotrophomonas sp. prokMSA_id:089979 AY307922 Stenotrophomonas sp. LUP prokMSA_id:088407 AY307998 Stenotrophomonas sp. prokMSA_id:089958 AY315445 Stenotrophomonas maltophilia strain CC-Hntcm1 prokMSA_id:088461 AY321966 Stenotrophomonas maltophilia strain MF48 prokMSA_id:090997 AY330260 gamma clone g16-F1 prokMSA_id:091037 AY330261 gamma clone g16-F2 prokMSA_id:091706 AY330262 gamma clone g16-F8 prokMSA_id:091101 AY337582 Stenotrophomonas maltophilia CC-SB818F1 prokMSA_id:092888 AY346311 Stenotrophomonas sp. HPC252 prokMSA_id:092989 AY346312 Stenotrophomonas sp. HPC252 prokMSA_id:093468 AY364056 gamma clone cRI3a prokMSA_id:094408 AY369146 clone F-OTU6 prokMSA_id:096184 AY394633 Stenotrophomonas sp. clone N11-19 prokMSA_id:051159 BM130147 pb27b07.y1 Anc caninum L3 serum stim pAMP1 v1 Chiapelli McCarter Ancylostoma caninum cDNA 5' similar to gb|M59158|XANRR16SA Xanthomonas maltophilia ; mRNA prokMSA_id:007796 M59158 Stenotrophomonas maltophilia ATCC 13637 . prokMSA_id:043010 U64004 Xanthomonas sp. SCB27 prokMSA_id:050600 U85134 gamma clone ACK-DE52 prokMSA_id:048792 U85139 gamma clone ACK-DE58 prokMSA_id:007794 X84636 str. SBR2112. prokMSA_id:007837 X91528 clone K13. 2.28.3.8.6 XYL.FASTIDIOSA_SUBGROUP 54 seqs 2.28.3.8.6.001 OTU 38 seqs prokMSA_id:051876 AE003849 Xylella fastidiosa 9a5c complete genome prokMSA_id:030732 AE003861 Xylella fastidiosa 9a5c section 7 of 229 of the complete genome prokMSA_id:051235 AE003870 Xylella fastidiosa 9a5c section 16 of 229 of the complete genome prokMSA_id:079259 AE012553 Xylella fastidiosa Temecula1 section 1 of 9 of the complete genome prokMSA_id:007844 AF159572 Xylella fastidiosa str. PCE-FG ATCC 35881. prokMSA_id:007845 AF159573 Xylella fastidiosa str. r116v11. prokMSA_id:007846 AF159574 Xylella fastidiosa str. PD28-5. prokMSA_id:007847 AF159575 Xylella fastidiosa str. CVC93-2. prokMSA_id:007848 AF159576 Xylella fastidiosa str. Mul-2. prokMSA_id:007850 AF159578 Xylella fastidiosa str. PWT-22 ATCC 35878. prokMSA_id:007851 AF159579 Xylella fastidiosa str. PLS2-9. prokMSA_id:007852 AF159580 Xylella fastidiosa str. PP4-5. prokMSA_id:007853 AF192343 str. PCE-FF ATCC 35879. prokMSA_id:021170 AF203388 Xylella fastidiosa strain PL.788 prokMSA_id:050520 AF203389 Xylella fastidiosa strain CI.52 prokMSA_id:020550 AF203390 Xylella fastidiosa strain CO.01 prokMSA_id:021608 AF203391 Xylella fastidiosa strain GR.8935 prokMSA_id:025098 AF203392 Xylella fastidiosa strain PE.PLS prokMSA_id:019013 AF224734 Xylella fastidiosa prokMSA_id:027520 AF224735 Xylella fastidiosa strain ATCC 35874 prokMSA_id:019739 AF224736 Xylella fastidiosa isolate plant#5 CVC prokMSA_id:050654 AF224737 Xylella fastidiosa isolate Found 4 prokMSA_id:051545 AF224738 Xylella fastidiosa strain ATCC 35873 prokMSA_id:074745 AF224739 Xylella fastidiosa isolate Cafe 20 prokMSA_id:040772 AF224740 Xylella fastidiosa isolate MUL1 prokMSA_id:059945 AF536760 Xylella fastidiosa isolate Temecula prokMSA_id:056224 AF536761 Xylella fastidiosa isolate PLM G83 prokMSA_id:059944 AF536762 Xylella fastidiosa isolate RGW-R prokMSA_id:059943 AF536763 Xylella fastidiosa isolate MUL-3 prokMSA_id:059942 AF536764 Xylella fastidiosa isolate ELM-1 prokMSA_id:059941 AF536765 Xylella fastidiosa isolate B14 prokMSA_id:059940 AF536766 Xylella fastidiosa isolate SL1 prokMSA_id:059939 AF536767 Xylella fastidiosa isolate CM1 prokMSA_id:059938 AF536768 Xylella fastidiosa isolate CRS2 prokMSA_id:056414 AF536769 Xylella fastidiosa isolate P3 prokMSA_id:059937 AF536770 Xylella fastidiosa isolate ALS-BC prokMSA_id:050284 NC_002488 Xylella fastidiosa 9a5c complete genome prokMSA_id:079335 NC_004556 Xylella fastidiosa Temecula1 complete genome 2.28.3.8.6.002 OTU 1 seq prokMSA_id:081362 AY218758 clone KD6-43 2.28.3.8.6.999 poor quality 15 seqs prokMSA_id:007849 AF159577 Xylella fastidiosa str. OSL92-3. prokMSA_id:044884 AF388328 clone Ac38 prokMSA_id:034179 AF392661 clone SCF4 prokMSA_id:050241 AF418970 clone HT2G8 prokMSA_id:074942 AF431356 gamma clone C31.52SM prokMSA_id:025184 AJ252683 Rhizosphere soil clone RSC-II-44 prokMSA_id:021824 AJ404550 SB4 prokMSA_id:061262 AY044034 clone S58P.07WL prokMSA_id:093375 AY361933 clone P8-GEN-22 prokMSA_id:007843 M26601 Xylella fastidiosa str. PWT-100 ATCC 35880. prokMSA_id:007842 X84477 str. SBR1034. prokMSA_id:007838 X84491 str. SBR1055. prokMSA_id:007841 X84531 str. SBR1104. prokMSA_id:007840 X84559 str. SBR2015. prokMSA_id:007839 X84593 str. SBR2059. 2.28.3.8.7 XAN.CAMPESTRIS_SUBGROUP 279 seqs 2.28.3.8.7.012 OTU 2 seqs prokMSA_id:007881 AF047619 clone SRang1.33. prokMSA_id:067826 AY082481 gamma clone 44a-U2-13 2.28.3.8.7.016 OTU 92 seqs prokMSA_id:007875 AB008507 str. 12-3. prokMSA_id:007884 AB008508 str. DY01. prokMSA_id:007885 AB021391 Pseudomonas boreopolis ATCC 33662. prokMSA_id:007898 AB021399 Pseudomonas cissicola ATCC 33616. prokMSA_id:050171 AB074708 Gamma S-A1-4B prokMSA_id:043081 AB074713 Gamma S-A2-11 prokMSA_id:039016 AB074736 Gamma S-Nnd-23A prokMSA_id:066134 AE012039 Xanthomonas axonopodis pv. citri str. 306 section 417 of 469 of the complete genome prokMSA_id:066133 AE012082 Xanthomonas axonopodis pv. citri str. 306 section 460 of 469 of the complete genome prokMSA_id:055391 AE012505 Xanthomonas campestris pv. campestris str. ATCC 33913 section 413 of 460 of the complete genome prokMSA_id:066211 AE012540 Xanthomonas campestris pv. campestris str. ATCC 33913 section 448 of 460 of the complete genome prokMSA_id:007876 AF000946 Xanthomonas campestris str. Xc17. prokMSA_id:007867 AF142878 Stenotrophomonas DEEP-4. prokMSA_id:007897 AF159581 Xanthomonas campestris str. L2. prokMSA_id:007874 AF188831 Xanthomonas campestris pv. campestris prokMSA_id:016822 AF208315 Xanthomonas cynarae prokMSA_id:037560 AF214139 Stenotrophomonas sp. P91630 prokMSA_id:041720 AF273082 Stenotrophomonas minatitlanensis prokMSA_id:073182 AF290420 Xanthomonas campestris prokMSA_id:050266 AF321012 Stenotrophomonas maltophilia prokMSA_id:029468 AF335549 Xanthomonas sp. 36A prokMSA_id:052510 AF408330 Stenotrophomonas sp. clone KL-15-2-22 prokMSA_id:022966 AF408332 beta clone KL-15-2-16 prokMSA_id:041363 AF408333 beta clone KL-59-7-1 prokMSA_id:068804 AF442739 Xanthomonas axonopodis pv. aurantifolii strain X84 ; intergenic spacer complete ; and 23S prokMSA_id:068803 AF442740 Xanthomonas axonopodis pv. aurantifolii strain X341 ; intergenic spacer complete ; and 23S prokMSA_id:068802 AF442741 Xanthomonas axonopodis pv. citrumelo strain F1 ; intergenic spacer complete ; and 23S prokMSA_id:068799 AF442742 Xanthomonas axonopodis pv. citri strain MI ; intergenic spacer complete ; and 23S prokMSA_id:068800 AF442743 Xanthomonas axonopodis pv. citri strain MA ; intergenic spacer complete ; and 23S prokMSA_id:068801 AF442744 Xanthomonas axonopodis pv. citri strain Lw ; intergenic spacer complete ; and 23S prokMSA_id:055690 AF506043 Xanthomonas sp. LCSAOTU19 prokMSA_id:065388 AF511515 Stenotrophomonas maltophilia isolate SaO5sm prokMSA_id:065384 AF511522 Stenotrophomonas maltophilia isolate SaO5lg prokMSA_id:062955 AF527599 clone LPU77 prokMSA_id:062951 AF527601 clone LPU81 prokMSA_id:007900 AJ011332 Stenotrophomonas maltophilia str. HK40. prokMSA_id:007877 AJ012231 Pseudoxanthomonas broegbernensis str. B1616/1. prokMSA_id:007899 AJ131117 Stenotrophomonas maltophilia LMG 10857. prokMSA_id:007859 AJ131912 Stenotrophomonas maltophilia LMG 11104. prokMSA_id:061947 AJ244720 Stentrophomonas-like sp. V4.BP.15 prokMSA_id:038820 AJ293461 Stenotrophomonas maltophilia strain e-p14 prokMSA_id:052297 AJ293462 Stenotrophomonas maltophilia strain e-p17 prokMSA_id:034542 AJ293463 Stenotrophomonas maltophilia strain e-p10 prokMSA_id:066929 AJ306770 clone SHA-39 prokMSA_id:064760 AJ319563 gamma clone Poland-11-QC prokMSA_id:064761 AJ319565 gamma clone Poland-16-QC prokMSA_id:064757 AJ319567 gamma clone Poland-6-QC prokMSA_id:057539 AJ516049 Stenotrophomonas maltophilia strain LE/61 prokMSA_id:093194 AJ551165 Stenotrophomonas sp. An27 isolate An27 prokMSA_id:093492 AJ551168 Stenotrophomonas sp. An30 isolate An30 prokMSA_id:095191 AJ585220 Xanthomonas campestris prokMSA_id:064287 AY040357 Stenotrophomonas maltophilia strain LMG 20578 prokMSA_id:068651 AY081993 clone KRA30-39 prokMSA_id:062235 AY124375 Pseudoxanthomonas sp. UR374_02 prokMSA_id:059558 AY135649 Xanthomonas axonopodis pv. allii prokMSA_id:081246 AY206869 clone uvs_af16 prokMSA_id:085990 AY244913 rumen clone BF35 prokMSA_id:083056 AY247064 Xanthomonas translucens pv. graminis ; -23S intergenic spacer region complete ; and 23S prokMSA_id:085823 AY253329 Xanthomonas translucens pv. poae ; intergenic spacer complete ; and 23S prokMSA_id:087040 AY288080 Xanthomonas vesicatoria strain CNPH345 and -23S intergenic spacer prokMSA_id:086987 AY288081 Xanthomonas axonopodis pv. vesicatoria strain CNPH411 and -23S intergenic spacer prokMSA_id:087180 AY288082 Xanthomonas gardneri strain CNPH467 and -23S intergenic spacer prokMSA_id:087353 AY288083 Xanthomonas gardneri strain CNPH496 and -23S intergenic spacer prokMSA_id:090648 AY336112 Xanthomonas sp. PSD-2 prokMSA_id:091029 AY345509 clone W4A-A35 prokMSA_id:093756 AY367030 Stenotrophomonas maltophilia isolate Es2-5 prokMSA_id:007863 L24789 Xanthomonas campestris str. X56. prokMSA_id:007886 L24789 Xanthomonas campestris str. X56. prokMSA_id:065525 NC_003902 Xanthomonas campestris pv. campestris str. ATCC 33913 complete genome prokMSA_id:064373 NC_003919 Xanthomonas axonopodis pv. citri str. 306 complete genome prokMSA_id:007872 X95917 Xanthomonas campestris LMG 568 . prokMSA_id:007894 X95918 Xanthomonas albilineans LMG 494 . prokMSA_id:007871 X95919 Xanthomonas axonopodis LMG 538 . prokMSA_id:007869 X95920 Xanthomonas fragariae LMG 708 . prokMSA_id:007858 X95921 Xanthomonas oryzae LMG 5047 . prokMSA_id:007861 X95922 Xanthomonas populi LMG 5743 . prokMSA_id:007901 X99297 Xanthomonas campestris LMG 682. prokMSA_id:007880 X99298 Xanthomonas campestris LMG 726. prokMSA_id:007879 X99299 Xanthomonas translucens LMG 876 . prokMSA_id:007889 Y10754 Xanthomonas hyacinthi LMG 739 . prokMSA_id:007896 Y10755 Xanthomonas vasicola LMG 736 . prokMSA_id:007878 Y10756 Xanthomonas melonis LMG 8670 . prokMSA_id:007887 Y10757 Xanthomonas arboricola LMG 747 . prokMSA_id:007866 Y10758 Xanthomonas pisi LMG 847 . prokMSA_id:007892 Y10759 Xanthomonas hortorum LMG 733 . prokMSA_id:007888 Y10760 Xanthomonas cucurbitae str. LMG . prokMSA_id:007857 Y10761 Xanthomonas vesicatoria LMG 911 . prokMSA_id:007890 Y10762 Xanthomonas cassavae LMG 673 . prokMSA_id:007891 Y10763 Xanthomonas theicola LMG 8684 . prokMSA_id:007856 Y10764 Xanthomonas bromi LMG 947 . prokMSA_id:007883 Y10765 Xanthomonas codiaei LMG 8678 . prokMSA_id:007862 Y10766 Xanthomonas sacchari LMG 471 . 2.28.3.8.7.017 OTU 3 seqs prokMSA_id:075052 AJ519985 Thermomonas fusca strain LMG 21736 prokMSA_id:077152 AJ519986 Thermomonas fusca strain LMG 21737T prokMSA_id:007873 U51103 str. BrG3. 2.28.3.8.7.018 OTU 2 seqs prokMSA_id:007870 L24791 Xanthomonas campestris str. XC53. prokMSA_id:007854 L24791 Xanthomonas campestris str. XC53. 2.28.3.8.7.019 OTU 11 seqs prokMSA_id:017727 AB039329 Pseudoxanthomonas sp. M1-2 prokMSA_id:048694 AB039330 Pseudoxanthomonas sp. M1-3 prokMSA_id:048518 AB039336 Pseudoxanthomonas sp. M1-7 prokMSA_id:070550 AF280866 mle1-45 prokMSA_id:070296 AF309808 synthetic wastewater tmbr11-28 complete prokMSA_id:073868 AF309810 synthetic wastewater tmbr11-3 complete prokMSA_id:070418 AF309818 synthetic wastewater tmbr15-4 complete prokMSA_id:072795 AF427039 Pseudoxanthomonas taiwanensis prokMSA_id:031789 AF479790 Pseudoxanthomonas taiwanensis strain CB-225 prokMSA_id:060980 AF530283 Pseudoxanthomonas sp. S7-07 prokMSA_id:096475 Y14145 Xanthomonas campestris isolate ISR05 2.28.3.8.7.020 OTU 1 seq prokMSA_id:018867 X92132 sp. Lake Natron isolate 97NT4 2.28.3.8.7.021 OTU 6 seqs prokMSA_id:059334 AF502234 clone HP1B89 prokMSA_id:057805 AF548381 SG-3 complete prokMSA_id:082066 AY192036 alpha clone G43-GM4R prokMSA_id:088350 AY328761 DSSD63 prokMSA_id:088178 AY328765 DSSD67 prokMSA_id:088821 AY328770 DSSD72 2.28.3.8.7.022 OTU 3 seqs prokMSA_id:064660 AF467297 Xanthomonas sp. clone burs_22 prokMSA_id:065718 AF507664 soil clone C1129 prokMSA_id:024624 AY038723 clone TAF-A132 2.28.3.8.7.023 OTU 1 seq prokMSA_id:027216 AJ318169 gamma clone BIrii42 2.28.3.8.7.024 OTU 1 seq prokMSA_id:028184 AJ252686 Rhizosphere soil clone RSC-II-55 2.28.3.8.7.025 OTU 1 seq prokMSA_id:033783 AF424055 gamma MERTZ_2CM_11 2.28.3.8.7.026 OTU 1 seq prokMSA_id:043798 AF260712 Stenotrophomonas sp. S8 2.28.3.8.7.027 OTU 1 seq prokMSA_id:044682 AJ252682 Rhizosphere soil clone RSC-II-42 2.28.3.8.7.028 OTU 1 seq prokMSA_id:053989 AY038720 clone TAF-B72 2.28.3.8.7.029 OTU 1 seq prokMSA_id:060576 AF407725 clone B63 2.28.3.8.7.030 OTU 1 seq prokMSA_id:060837 AY135931 clone SG2-145 2.28.3.8.7.031 OTU 2 seqs prokMSA_id:064425 AY102898 clone BCM3P-34B prokMSA_id:060848 AY135926 clone SG2-133 2.28.3.8.7.032 OTU 1 seq prokMSA_id:060867 AY135904 clone SG2-40 2.28.3.8.7.033 OTU 1 seq prokMSA_id:061900 AJ244722 Xanthomonas-like sp. V4.BO.41 2.28.3.8.7.034 OTU 1 seq prokMSA_id:063601 AY043383 Xanthomonas sp. AU2502 2.28.3.8.7.035 OTU 1 seq prokMSA_id:064017 AB087355 clone:F18 2.28.3.8.7.036 OTU 1 seq prokMSA_id:065533 AY095434 yard-trimming-compost clone S-73 2.28.3.8.7.037 OTU 1 seq prokMSA_id:071547 AF530282 Pseudoxanthomonas sp. S5-25 2.28.3.8.7.038 OTU 1 seq prokMSA_id:071744 AY038719 clone TAF-A205 E49 2.28.3.8.7.039 OTU 1 seq prokMSA_id:073958 X84607 clone SBR2076 2.28.3.8.7.040 OTU 1 seq prokMSA_id:075145 AJ519662 gamma clone GuBH2-AG-107 2.28.3.8.7.041 OTU 3 seqs prokMSA_id:079389 AB101445 Xanthomonas axonopodis complete strain:S11 prokMSA_id:079280 AB101446 Xanthomonas axonopodis complete strain:S54 prokMSA_id:079476 AB101447 Xanthomonas axonopodis complete strain:S53 2.28.3.8.7.042 OTU 1 seq prokMSA_id:080953 AY193207 clone SRE59 2.28.3.8.7.043 OTU 1 seq prokMSA_id:081182 AY218773 clone KD6-95 2.28.3.8.7.044 OTU 1 seq prokMSA_id:081649 AY218662 clone KD9-170 2.28.3.8.7.045 OTU 1 seq prokMSA_id:081928 AY218736 clone KD5-27 2.28.3.8.7.046 OTU 1 seq prokMSA_id:082940 AY242726 soil clone Tc130-23 2.28.3.8.7.047 OTU 1 seq prokMSA_id:083030 AJ557856 Marine arctic deep-sea HC11 2.28.3.8.7.048 OTU 1 seq prokMSA_id:083334 AY242725 soil clone Tc122-G07 2.28.3.8.7.049 OTU 1 seq prokMSA_id:087625 AY268228 clone C3 small subunit 2.28.3.8.7.050 OTU 1 seq prokMSA_id:087714 AY268230 clone D3 small subunit 2.28.3.8.7.051 OTU 1 seq prokMSA_id:093887 AJ581600 gamma clone KCM-B-65 2.28.3.8.7.052 OTU 1 seq prokMSA_id:096839 AY186075 clone EACUL1A4 small subunit 2.28.3.8.7.999 poor quality 126 seqs prokMSA_id:049580 AB030923 Xanthomonas oryzae prokMSA_id:024651 AB045317 Gram negative K3 prokMSA_id:074968 AB075144 clone:TCRS11 prokMSA_id:084698 AB097995 Gamma ANRB11-4 prokMSA_id:036861 AF047649 TRA2-7 prokMSA_id:036163 AF078353 Grassland soil clone sl1_216 prokMSA_id:044045 AF106604 Xanthomonas theicola prokMSA_id:019744 AF106610 Xanthomonas sacchari prokMSA_id:039234 AF128760 Soil is110 prokMSA_id:037874 AF141517 gamma clone CRE-PA35 prokMSA_id:074730 AF143748 gamma clone A4 prokMSA_id:045037 AF143749 gamma clone A5 prokMSA_id:071425 AF143757 gamma clone A14 prokMSA_id:021831 AF161808 Aquatic STS_R2A_25 prokMSA_id:022361 AF175633 WJGRT-112 prokMSA_id:030311 AF226205 maize root Zmrc153 prokMSA_id:024866 AF234064 #0319-2J12 prokMSA_id:048334 AF240141 Grassland soil TSA-16 prokMSA_id:036648 AF245347 SA32 prokMSA_id:027354 AF280944 clone JS4 prokMSA_id:073732 AF309817 synthetic wastewater tmbr15-3 complete prokMSA_id:072948 AF320970 Lake Michigan sediment LMBA32 prokMSA_id:070753 AF320971 Lake Michigan sediment LMBA32 prokMSA_id:039259 AF332262 clone C12-25 prokMSA_id:019032 AF384195 Thermomonas sp. S6 prokMSA_id:019354 AF384196 Thermomonas sp. TG15 prokMSA_id:048798 AF390922 clone ICBTE5 prokMSA_id:043608 AF392660 clone SCD4 prokMSA_id:048083 AF392663 clone CRD1 prokMSA_id:051531 AF392673 clone LEF8 prokMSA_id:042868 AF406688 Stenotrophomonas maltophilia strain B21 prokMSA_id:067632 AF427158 Stenotrophomonas sp. 1 prokMSA_id:034080 AF428794 clone CR98-5-64 prokMSA_id:052245 AF428795 clone CR98-5-65 prokMSA_id:049977 AF428878 clone CR98-24-72 prokMSA_id:036250 AF429099 clone CR99-7-65 prokMSA_id:076635 AF431340 gamma clone S21.21WL prokMSA_id:076318 AF431358 gamma clone S36.04SM prokMSA_id:075366 AF431385 gamma clone S52.29PG prokMSA_id:024901 AF451843 Xanthomonas melonis strain dG prokMSA_id:050420 AF451845 Xanthomonas melonis strain dM prokMSA_id:068707 AF484056 clone p35 prokMSA_id:067458 AF493269 clone pHS54 prokMSA_id:067446 AF493291 clone pHS25 prokMSA_id:063677 AF522929 clone 7g9 prokMSA_id:063673 AF522930 clone 7g11 prokMSA_id:073553 AF530289 Pseudoxanthomonas sp. CA-23 prokMSA_id:078687 AF547029 442 prokMSA_id:072639 AH010359 Lake Michigan sediment LMBA32 and genes prokMSA_id:044740 AJ005066 soil organism clone 17 prokMSA_id:048784 AJ130778 Stenotrophomonas sp. isolate P-9-8 prokMSA_id:028558 AJ130779 Stenotrophomonas sp. isolate P-26-14 prokMSA_id:016601 AJ130780 Stenotrophomonas sp. isolate P-17-6 prokMSA_id:039547 AJ130782 Xanthomonas sp. isolate P-7-1 prokMSA_id:007868 AJ131781 Stenotrophomonas maltophilia LMG 10871. prokMSA_id:007902 AJ131911 Stenotrophomonas maltophilia LMG 11103. prokMSA_id:007903 AJ131917 Stenotrophomonas maltophilia LMG 11108. prokMSA_id:061942 AJ244721 Stentrophomonas-like sp. V4.BP.08 prokMSA_id:024310 AJ279494 Benzene-decomposing S2 strain S2 prokMSA_id:022859 AJ295351 Rape rhizosphere cse006 prokMSA_id:033603 AJ295355 Rape rhizosphere cse019 prokMSA_id:074531 AJ295359 Rape rhizosphere cse031 prokMSA_id:027794 AJ295365 Rape rhizosphere cse045 prokMSA_id:025474 AJ295381 Rape rhizosphere cse095 prokMSA_id:030047 AJ295427 Rape rhizosphere tsb022 prokMSA_id:025260 AJ295448 Rape rhizosphere tsb064 prokMSA_id:020577 AJ295452 Rape rhizosphere tsb071 prokMSA_id:025741 AJ298934 Stenotrophomonas maltophilia strain d21 prokMSA_id:020430 AJ404581 US5 prokMSA_id:026750 AJ409153 Stenotrophomonas maltophilia strain dtb12 prokMSA_id:039748 AJ416659 gamma clone env.S133 prokMSA_id:048095 AJ416661 gamma clone env.S045 prokMSA_id:042530 AJ421196 clone C2-K11 prokMSA_id:075735 AJ428142 isolate band mw-b6 prokMSA_id:056977 AJ518603 clone Qui4P2-72 prokMSA_id:056920 AJ518671 clone Sai2P2-8 prokMSA_id:088098 AJ550285 Pseudoxanthomonas sp. TK57 isolate TK57 prokMSA_id:088914 AJ550287 Stenotrophomonas sp. TK40 isolate TK40 prokMSA_id:086736 AJ561129 gamma clone ANT-RB 52 prokMSA_id:093222 AJ581641 gamma clone SK2 5' region prokMSA_id:094020 AJ581642 gamma clone SK2 3' region prokMSA_id:043982 AY039432 Soil S81D2 prokMSA_id:050745 AY039434 Soil S84M1 prokMSA_id:040130 AY039442 Earthworm cast C29D1 prokMSA_id:071991 AY040347 Stenotrophomonas maltophilia strain LMG 20565 prokMSA_id:073349 AY040350 Stenotrophomonas maltophilia strain LMG 20569 prokMSA_id:055931 AY043565 Stenotrophomonas sp. 2S2.H6 prokMSA_id:061625 AY043566 Stenotrophomonas sp. 2S2.F3 prokMSA_id:061622 AY043568 Stenotrophomonas sp. 2S2.F5 prokMSA_id:061623 AY043569 Stenotrophomonas sp. 2S2.F1 prokMSA_id:061596 AY043599 Forest soil 2S2.G3 prokMSA_id:061520 AY043697 gamma clone NOS7.120WL prokMSA_id:061418 AY043819 gamma clone SMS9.129WL prokMSA_id:061267 AY044031 clone S58P.11WL prokMSA_id:017813 AY048191 Xanthomonas sp. clone PR-VFA-19 prokMSA_id:033698 AY050587 clone GOUTA18 prokMSA_id:067220 AY090649 Methylobacter sp. clone C21 prokMSA_id:071058 AY135482 Pseudoxanthomonas sp. CA-15 prokMSA_id:060885 AY135886 clone SG1-127 prokMSA_id:069718 AY143717 Stenotrophomonas sp. clone Lu108 prokMSA_id:056323 AY143759 Xanthomonadaceae clone Lur17 prokMSA_id:073151 AY143765 Xanthomonadaceae clone Lur40 prokMSA_id:069758 AY143766 Xanthomonadaceae clone Lur43 prokMSA_id:074774 AY143774 Xanthomonas sp. clone Lur92 prokMSA_id:056176 AY143780 soil clone Pr46 prokMSA_id:069143 AY144244 gamma clone LTUG02014 prokMSA_id:073690 AY144245 gamma clone LTUG02156 prokMSA_id:072210 AY144252 gamma clone LTUG05314 prokMSA_id:080645 AY193017 clone SRE3 prokMSA_id:079668 AY193021 clone SRE6 prokMSA_id:082495 AY214715 candidate division WS3 clone SL2-2-G11F prokMSA_id:082887 AY214907 gamma clone BAC-II-3A-P27 prokMSA_id:085290 AY217475 Gamma WCIR8 prokMSA_id:086888 AY268285 clone H10 small subunit prokMSA_id:083289 AY271755 Xanthomonas sp. prokMSA_id:088659 AY289473 soil clone ABS-59 prokMSA_id:096611 AY360452 Xanthomonas campestris strain IG8 prokMSA_id:096284 AY391685 soil clone M69 prokMSA_id:007865 L24792 Xanthomonas campestris str. XC41. prokMSA_id:007855 L24792 Xanthomonas campestris str. XC41. prokMSA_id:007860 NONE Xanthomonas campestris ATCC 33913 . prokMSA_id:007882 NONE Xanthomonas fragariae ATCC 33239 . prokMSA_id:007893 NONE Xanthomonas phaseoli ATCC 49119 . prokMSA_id:007864 NONE Xanthomonas oryzae LMG 5047 . prokMSA_id:033784 U81732 clone vadinHA77 prokMSA_id:007895 X84607 str. SBR2076. 2.28.3.9 LEGIONELLA_GROUP 305 seqs 2.28.3.9.1 LEGIONELLA_SUBGROUP 226 seqs 2.28.3.9.1.1 FLU.DUMOFFII_SUBGROUP 16 seqs 2.28.3.9.1.1.001 OTU 2 seqs prokMSA_id:081714 AY192035 gamma clone G39-GM4R prokMSA_id:007908 X97361 Legionella sp. str. LLAP8. 2.28.3.9.1.1.002 OTU 1 seq prokMSA_id:007907 Z32637 Fluoribacter dumoffii NCTC 11370. 2.28.3.9.1.1.003 OTU 1 seq prokMSA_id:007906 X73405 Fluoribacter dumoffii str. NY-23 ATCC 33279 . 2.28.3.9.1.1.004 OTU 1 seq prokMSA_id:045405 AF316800 Crater Lake CL120-7 2.28.3.9.1.1.999 poor quality 11 seqs prokMSA_id:033582 AF129522 Legionella dumoffii prokMSA_id:032411 AH001691 F.bozemanae Legionella prokMSA_id:035663 AH001692 F.dumoffii Legionella prokMSA_id:033699 AH001693 F.dumoffii Legionella prokMSA_id:035964 AH001694 F.gormanii Legionella prokMSA_id:061419 AY043818 gamma clone NMS8.71WL prokMSA_id:007905 M24619 Fluoribacter dumoffii str. NY-23. prokMSA_id:007910 M24620 Fluoribacter bozemanae str. WIGA NCTC 11368. prokMSA_id:007904 M24640 Fluoribacter gormanii str. LS-13 ATCC 33342 . prokMSA_id:007909 M24650 Fluoribacter dumoffii str. Tex-KL ATCC 33343. prokMSA_id:036456 U85135 gamma clone ACK-DE72 2.28.3.9.1.2 LEG.WADSWORTHII_SUBGROUP 8 seqs 2.28.3.9.1.2.001 OTU 1 seq prokMSA_id:007915 Z49720 Legionella cherrii. 2.28.3.9.1.2.002 OTU 2 seqs prokMSA_id:007913 X73401 Legionella wadsworthii ATCC 33877 . prokMSA_id:007914 X73404 Legionella cherrii ATCC 35252 . 2.28.3.9.1.2.003 OTU 1 seq prokMSA_id:007912 Z49738 Legionella wadsworthii NCTC 11532. 2.28.3.9.1.2.004 OTU 1 seq prokMSA_id:007911 Z32639 Fluoribacter gormanii NCTC 11401. 2.28.3.9.1.2.005 OTU 1 seq prokMSA_id:080375 AF468229 clone ARKCH2Br2-23 2.28.3.9.1.2.999 poor quality 2 seqs prokMSA_id:061436 AY043798 gamma clone NMW3.97WL prokMSA_id:089194 AY289471 soil clone ABS-567 2.28.3.9.1.3 LEG.PARISIENSIS_SUBGROUP 7 seqs 2.28.3.9.1.3.003 OTU 3 seqs prokMSA_id:096005 AJ601375 Legionella parisiensis prokMSA_id:007917 U59697 Legionella parisiensis str. Lyon96010011; FLP2 ATCC 700174. prokMSA_id:007916 Z49731 Legionella parisiensis NCTC 11983. 2.28.3.9.1.3.999 poor quality 4 seqs prokMSA_id:069332 AJ512248 Legionella sp. isolate top1 prokMSA_id:072785 AJ512249 Legionella sp. isolate res1 prokMSA_id:071232 AJ512250 Legionella sp. isolate rec1 prokMSA_id:055967 AJ512274 Legionella sp. isolate bot1 2.28.3.9.1.4 LEG.ANISA_SUBGROUP 4 seqs 2.28.3.9.1.4.001 OTU 1 seq prokMSA_id:007921 X73394 Legionella anisa ATCC 35292 . 2.28.3.9.1.4.002 OTU 1 seq prokMSA_id:007920 AF057017 Legionella FM-1-679 str. FM-1-679. 2.28.3.9.1.4.003 OTU 2 seqs prokMSA_id:007919 AF122882 Legionella ATCC700511 str. IB V n#3 ATCC 700511. prokMSA_id:007918 Z32635 Legionella anisa NCTC 11974. 2.28.3.9.1.5 FLU.BOZEMANAE_SUBGROUP 6 seqs 2.28.3.9.1.5.001 OTU 1 seq prokMSA_id:007925 U64035 str. LLAP 8. 2.28.3.9.1.5.002 OTU 2 seqs prokMSA_id:007924 Z49718 Fluoribacter bozemanae str. spg2 NCTC 11975. prokMSA_id:007922 Z49719 Fluoribacter bozemanae str. Mi-15 sgp1 NCTC 11369. 2.28.3.9.1.5.999 poor quality 3 seqs prokMSA_id:076634 AF431352 gamma clone N27.16SM prokMSA_id:007926 M24618 Fluoribacter bozemanae str. MI-15. prokMSA_id:007923 M36031 Fluoribacter bozemanae str. WIGA NCTC 11368. 2.28.3.9.1.6 LEG.CINCINNATIENSIS_SUBGROUP 9 seqs 2.28.3.9.1.6.001 OTU 2 seqs prokMSA_id:007928 X73399 Legionella sainthelensi ATCC 35248 . prokMSA_id:007933 X73407 Legionella cincinnatiensis ATCC 43753 . 2.28.3.9.1.6.002 OTU 1 seq prokMSA_id:007932 Z49721 Legionella cincinnatiensis NCTC 12438. 2.28.3.9.1.6.003 OTU 1 seq prokMSA_id:007931 Z49735 Legionella santicrucis NCTC 11999. 2.28.3.9.1.6.004 OTU 1 seq prokMSA_id:007929 Z49725 Legionella gratiana NCTC 12788. 2.28.3.9.1.6.005 OTU 1 seq prokMSA_id:007927 Z49734 Legionella sainthelensi NCTC 11988. 2.28.3.9.1.6.006 OTU 1 seq prokMSA_id:060646 AF406526 gamma clone AEGEAN_234 2.28.3.9.1.6.999 poor quality 2 seqs prokMSA_id:076870 AY159193 RO_clone_5 prokMSA_id:007930 M36029 Legionella longbeachae str. Long-Beach-4 NCTC 11477. 2.28.3.9.1.7 LEG.LYTICA_SUBGROUP 38 seqs 2.28.3.9.1.7.001 OTU 11 seqs prokMSA_id:007941 U44909 unnamed organism. prokMSA_id:007942 U44910 unnamed organism. prokMSA_id:007953 X60080 Legionella sp. str. LLAP-3. prokMSA_id:007938 X66835 Legionella lytica str. LLAP-3 PCM 2298 . prokMSA_id:007948 X97356 Legionella sp. str. LLAP2. prokMSA_id:007945 X97358 Legionella lyticum str. LLAP3. prokMSA_id:007950 X97359 Legionella sp. str. LLAP6. prokMSA_id:007952 X97360 Legionella sp. str. LLAP9. prokMSA_id:007940 X97364 Legionella lytica str. LLAP-3 PCM 2298 . prokMSA_id:007951 X97365 Legionella sp. str. LLAP7. prokMSA_id:007937 Z49741 Legionella lytica str. LLAP-3 PCM 2298 . 2.28.3.9.1.7.002 OTU 4 seqs prokMSA_id:007949 X97357 Legionella sp. str. LLAP4. prokMSA_id:007947 X97362 Legionella sp. str. LLAP11. prokMSA_id:007939 X97366 Legionella sp. str. LLAP12. prokMSA_id:066336 X97366 Legionella sp. strain LLAP12 2.28.3.9.1.7.003 OTU 1 seq prokMSA_id:007946 X97363 Legionella sp. str. LLAP10. 2.28.3.9.1.7.004 OTU 1 seq prokMSA_id:007944 AF050530 clone WCHA1-85. 2.28.3.9.1.7.005 OTU 1 seq prokMSA_id:007936 Z32644 Legionella tucsonensis NCTC 124439. 2.28.3.9.1.7.006 OTU 1 seq prokMSA_id:007935 Z49737 Legionella steigerwaltii NCTC 11991. 2.28.3.9.1.7.007 OTU 1 seq prokMSA_id:007934 X73400 Legionella steigerwaltii ATCC 35302 . 2.28.3.9.1.7.008 OTU 1 seq prokMSA_id:021751 AY050582 clone GOUTA10 2.28.3.9.1.7.009 OTU 1 seq prokMSA_id:052016 AY050590 clone GOUTB2 2.28.3.9.1.7.010 OTU 1 seq prokMSA_id:064661 AF467296 Xanthomonas sp. clone 88_5_2 2.28.3.9.1.7.011 OTU 1 seq prokMSA_id:075359 AF431374 gamma clone C46.77PG 2.28.3.9.1.7.999 poor quality 14 seqs prokMSA_id:070792 AF093779 Band2#425 prokMSA_id:074852 AF128635 soil C0177 prokMSA_id:050552 AF141558 gamma clone CRO-2 prokMSA_id:048332 AF141569 gamma clone CRO-21 prokMSA_id:044940 AF175632 WJGRT-108 prokMSA_id:050547 AF428844 clone CR98-24-38 prokMSA_id:023207 AF428941 clone CR98-35-59 prokMSA_id:035675 AJ287656 gamma 245ev prokMSA_id:050533 AJ296608 GR-371.III.80 clone GR-371.III.80 prokMSA_id:070636 AJ512254 Legionella sp. isolate ofw37 prokMSA_id:040644 AY038493 gamma clone CD4G8 prokMSA_id:061432 AY043803 gamma clone NMS8.12WL prokMSA_id:007943 U44911 unnamed organism. prokMSA_id:073593 X97357 Legionella sp. strain LLAP4 2.28.3.9.1.8 LEG.SHAKESPEAREI_SUBGROUP 8 seqs 2.28.3.9.1.8.001 OTU 1 seq prokMSA_id:007958 Z49732 Legionella quateirensis NCTC 12370. 2.28.3.9.1.8.002 OTU 1 seq prokMSA_id:007957 U66104 str. LLAP-14. 2.28.3.9.1.8.003 OTU 1 seq prokMSA_id:007956 Z49736 Legionella shakespearei NCTC 12829. 2.28.3.9.1.8.004 OTU 1 seq prokMSA_id:007955 Z49739 Legionella worsleiensis NCTC 13277. 2.28.3.9.1.8.005 OTU 1 seq prokMSA_id:007954 Z49729 Legionella moravica NCTC 12239. 2.28.3.9.1.8.006 OTU 1 seq prokMSA_id:079695 AY187330 clone csbio160324 2.28.3.9.1.8.999 poor quality 2 seqs prokMSA_id:041393 AF078279 Grassland soil clone saf3_009 prokMSA_id:082531 AY217479 gamma clone WCB127 2.28.3.9.1.9 LEG.PNEUMOPHILA_SUBGROUP 26 seqs 2.28.3.9.1.9.001 OTU 1 seq prokMSA_id:007963 AF122886 Legionella waltersii str. 2074-AUS-E ATCC 51914. 2.28.3.9.1.9.003 OTU 1 seq prokMSA_id:007961 AF122883 Legionella gresilensis str. Greoux 11 D13 ATCC 700509. 2.28.3.9.1.9.005 OTU 6 seqs prokMSA_id:007962 AF122885 Legionella pneumophila subsp. pascullei str. U8W ATCC 33737. prokMSA_id:049961 AF129523 Legionella pneumophila strain CA1 prokMSA_id:051847 AF129524 Legionella pneumophila strain E5C1 prokMSA_id:074563 AF134574 Legionella pneumophila prokMSA_id:062834 AJ496383 Legionella pneumophila serogroup 6 avirulent mutant prokMSA_id:007960 X73402 Legionella pneumophila subsp. pneumophila str. Chicago 2 ATCC 2.28.3.9.1.9.006 OTU 1 seq prokMSA_id:058869 AF424887 Legionella busanensis strain K9970 2.28.3.9.1.9.007 OTU 1 seq prokMSA_id:073127 AY038724 clone TAF-B96 2.28.3.9.1.9.008 OTU 1 seq prokMSA_id:079218 AY187331 clone csbio160353 2.28.3.9.1.9.009 OTU 1 seq prokMSA_id:079365 AY187375 clone csbio160271 2.28.3.9.1.9.999 poor quality 14 seqs prokMSA_id:050349 AF141577 gamma clone CRO-33 prokMSA_id:076244 AF431353 gamma clone N27.18SM prokMSA_id:020599 AH001695 L.pneumophila strain Chicago-2 segment 1 of 3 prokMSA_id:039130 AH001696 L.pneumophila strain Dallas-1E'' subspecies uncertain segment 1 of 3 prokMSA_id:050652 AH001697 L.pneumophila strain Philadelphia-1 segment 1 of 3 prokMSA_id:072650 AJ512268 Legionella sp. isolate ofw17 prokMSA_id:007966 M19448 Legionella pneumophila subsp. pneumophila str. Chicago 2 ATCC prokMSA_id:007964 M19450 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 ATCC prokMSA_id:007969 M19452 Legionella pneumophila subsp. fraseri str. Dallas-1E'' ATCC 33216. prokMSA_id:007967 M36023 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 NCTC prokMSA_id:007968 M36024 Legionella pneumophila subsp. pneumophila str. Knoxville-1 NCTC prokMSA_id:007970 M36025 Legionella pneumophila subsp. fraseri str. Los Angeles 1 NCTC prokMSA_id:007965 M36026 Legionella pneumophila subsp. fraseri str. Dallas-1E NCTC 11405. prokMSA_id:007959 M59157 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 ATCC 2.28.3.9.1.10 LEG.LONDINIENSIS 1 seq 2.28.3.9.1.10.001 OTU 1 seq prokMSA_id:007971 Z49728 Legionella londiniensis NCTC 12374. 2.28.3.9.1.11 LEG.ISRAELENSIS_SUBGROUP 38 seqs 2.28.3.9.1.11.001 OTU 1 seq prokMSA_id:007984 Z32640 Legionella israelensis NCTC 12010. 2.28.3.9.1.11.002 OTU 1 seq prokMSA_id:007983 X73408 Legionella israelensis ATCC 43119. 2.28.3.9.1.11.003 OTU 2 seqs prokMSA_id:039817 AF129525 Legionella londiniensis prokMSA_id:007982 Z49730 Legionella nautarum NCTC 12375. 2.28.3.9.1.11.004 OTU 1 seq prokMSA_id:007981 Z32642 Legionella oakridgensis NCTC 11531. 2.28.3.9.1.11.005 OTU 1 seq prokMSA_id:007980 X73397 Legionella oakridgensis ATCC 33761 . 2.28.3.9.1.11.006 OTU 1 seq prokMSA_id:007979 AF013557 unnamed organism. 2.28.3.9.1.11.007 OTU 1 seq prokMSA_id:007978 Z49716 Legionella adelaidensis NCTC 12735. 2.28.3.9.1.11.008 OTU 1 seq prokMSA_id:007977 Z49723 Legionella geestiana NCTC 12373. 2.28.3.9.1.11.009 OTU 1 seq prokMSA_id:007976 Z49733 Legionella quinlivanii NCTC 12433. 2.28.3.9.1.11.010 OTU 1 seq prokMSA_id:007975 AF050529 clone WCHA1-76. 2.28.3.9.1.11.011 OTU 1 seq prokMSA_id:007974 Z49717 Legionella birminghamensis NCTC 12437. 2.28.3.9.1.11.012 OTU 1 seq prokMSA_id:007973 Z49727 Legionella lansingensis NCTC 12830. 2.28.3.9.1.11.013 OTU 1 seq prokMSA_id:007972 Z49722 Legionella fairfieldensis NCTC 12488. 2.28.3.9.1.11.014 OTU 1 seq prokMSA_id:089702 AY328763 DSSD65 2.28.3.9.1.11.999 poor quality 23 seqs prokMSA_id:041378 AB024619 Legionella oakridgensis prokMSA_id:051970 AF009994 prokMSA_id:037926 AF287042 gamma EC-I12 prokMSA_id:024439 AF392650 clone TCA4 prokMSA_id:017913 AF392653 clone CEA11 prokMSA_id:074969 AF431332 gamma clone N11.125WL prokMSA_id:076847 AF431334 gamma clone N12.09WL prokMSA_id:028601 AJ292891 WR8111 clone WR8111 prokMSA_id:052717 AJ404582 US11 prokMSA_id:073586 AJ512256 Legionella sp. isolate ofw35 prokMSA_id:071177 AJ512263 Legionella sp. isolate ofw24 prokMSA_id:069577 AJ512264 Legionella sp. isolate ofw23 prokMSA_id:069478 AJ512271 Legionella sp. isolate ofw13 prokMSA_id:023105 AY038480 gamma clone CD4H8 prokMSA_id:051631 AY038481 gamma clone CD4F6 prokMSA_id:061530 AY043686 gamma clone NOW2.51WL prokMSA_id:061526 AY043691 gamma clone NOW2.9WL prokMSA_id:061433 AY043801 gamma clone NMS8.109WL prokMSA_id:061425 AY043810 gamma clone NMS8.33WL prokMSA_id:061421 AY043816 gamma clone NMS8.68WL prokMSA_id:086268 AY217474 gamma clone WCB21 prokMSA_id:084839 AY242722 soil clone TcA13 prokMSA_id:095515 AY395214 clone N18K 2.28.3.9.1.12 STR.SBR1117_SUBGROUP 2 seqs 2.28.3.9.1.12.999 poor quality 2 seqs prokMSA_id:007986 X84542 str. SBR1117. prokMSA_id:007985 X84545 unnamed organism. 2.28.3.9.1.13 TAT.MICDADEI_SUBGROUP 34 seqs 2.28.3.9.1.13.001 OTU 1 seq prokMSA_id:007999 Z49740 Legionella feeleii str. 691-WI-H NCTC 11978. 2.28.3.9.1.13.002 OTU 2 seqs prokMSA_id:007997 X73395 Legionella feeleii str. WO-44C ATCC 35072 . prokMSA_id:007998 X73406 Legionella feeleii str. 691-WI-H ATCC 35849. 2.28.3.9.1.13.003 OTU 2 seqs prokMSA_id:007995 U64034 str. LLAP 1. prokMSA_id:007996 X97355 Legionella sp. str. LLAP1. 2.28.3.9.1.13.004 OTU 1 seq prokMSA_id:007994 Z49724 Legionella donaldsonii. 2.28.3.9.1.13.005 OTU 4 seqs prokMSA_id:048785 AF227161 Legionella maceachernii prokMSA_id:052462 AF227162 Legionella micdadei prokMSA_id:007993 X60081 Tatlockia maceachernii str. PX-1-G2-E2 NCTC 11982 . prokMSA_id:007991 Z32641 Tatlockia maceachernii str. PX-1-G2-E2 NCTC 11982 . 2.28.3.9.1.13.006 OTU 1 seq prokMSA_id:047939 AJ240918 gamma CHAB-XI-27 5' 2.28.3.9.1.13.007 OTU 1 seq prokMSA_id:078512 AJ536872 gamma clone JG30a-KF-94 2.28.3.9.1.13.008 OTU 1 seq prokMSA_id:079304 AY187379 clone csbio160232 2.28.3.9.1.13.009 OTU 1 seq prokMSA_id:079589 AY187332 clone csbio160316 2.28.3.9.1.13.999 poor quality 20 seqs prokMSA_id:049226 AF141430 gamma clone CR-PA44 prokMSA_id:069267 AF245318 SA3 prokMSA_id:045157 AH001781 T.micdadei strain TATLOCK segment 1 of 3 prokMSA_id:027449 AH001782 T.micdadei strain Pgh-12 segment 1 of 3 prokMSA_id:043673 AH001783 T.maceachernii prokMSA_id:070901 AJ512252 Legionella sp. isolate ofw5 prokMSA_id:069498 AJ512257 Legionella sp. isolate ofw34 prokMSA_id:069550 AJ512258 Legionella sp. isolate ofw33 prokMSA_id:073569 AJ512259 Legionella sp. isolate ofw31 prokMSA_id:071359 AJ512261 Legionella sp. isolate ofw28 prokMSA_id:069389 AJ512270 Legionella sp. isolate ofw14 prokMSA_id:069151 AJ512272 Legionella sp. isolate mid1 prokMSA_id:057234 AJ518268 clone Mul2P2-90 prokMSA_id:061440 AY043795 gamma clone NMW3.139WL prokMSA_id:061428 AY043811 gamma clone NMS8.34WL prokMSA_id:007988 M19443 Tatlockia micdadei str. TATLOCK ATCC 33218 . prokMSA_id:007990 M19451 Tatlockia micdadei str. PPA-JC. prokMSA_id:007987 M22262 Tatlockia micdadei str. VAMC-Pgh-12 ATCC 33346. prokMSA_id:007992 M34712 Tatlockia maceachernii str. PX-1-G2-E2 ATCC 35300 . prokMSA_id:007989 M36032 Tatlockia micdadei str. TATLOCK NCTC 11371 . 2.28.3.9.1.14 LEG.ERYTHRA_SUBGROUP 13 seqs 2.28.3.9.1.14.001 OTU 2 seqs prokMSA_id:008004 Z32638 Legionella erythra str. SE-32A-C8 ATCC 35303 . prokMSA_id:008001 Z32643 Legionella rubrilucens NCTC 11987. 2.28.3.9.1.14.002 OTU 1 seq prokMSA_id:008002 X73398 Legionella rubrilucens ATCC 35304 . 2.28.3.9.1.14.003 OTU 1 seq prokMSA_id:091939 AY345579 clone GLBR-58 2.28.3.9.1.14.999 poor quality 9 seqs prokMSA_id:016293 AF010123 prokMSA_id:008005 AF037597 Legionella taurinensis str. Turin I no. 1 ATCC 700508 . prokMSA_id:017848 AF175643 WJGRT-129 prokMSA_id:044965 AJ287657 gamma 388ev prokMSA_id:069404 AJ512251 Legionella sp. isolate ofw7 prokMSA_id:056497 AJ512269 Legionella sp. isolate ofw15 prokMSA_id:008003 M36027 Legionella erythra str. SE-32A-C8 NCTC 11977. prokMSA_id:072761 M36027 Legionella erythra prokMSA_id:008000 M36030 Legionella spiritensis str. Mt St Helens-9 NCTC 11990. 2.28.3.9.1.15 LEG.BRUNENSIS_SUBGROUP 6 seqs 2.28.3.9.1.15.001 OTU 1 seq prokMSA_id:008008 AF122884 Legionella beliardensis str. Montbeliard A1. 2.28.3.9.1.15.002 OTU 1 seq prokMSA_id:008007 X73403 Legionella brunensis. 2.28.3.9.1.15.003 OTU 1 seq prokMSA_id:008006 Z32636 Legionella brunensis NCTC 12240. 2.28.3.9.1.15.999 poor quality 3 seqs prokMSA_id:029250 AF414587 clone P3OB-46 prokMSA_id:065737 AF507646 soil clone C1214 prokMSA_id:056445 AY043682 gamma clone NOW2.122WL 2.28.3.9.1.16 LEG.JAMESTOWNIENSIS_SUBGROUP 6 seqs 2.28.3.9.1.16.001 OTU 1 seq prokMSA_id:008012 Z49726 Legionella jamestowniensis NCTC 11981. 2.28.3.9.1.16.002 OTU 1 seq prokMSA_id:008011 AB013257 str. NKB5. 2.28.3.9.1.16.003 OTU 1 seq prokMSA_id:008010 X73409 Legionella jamestowniensis ATCC 35298 . 2.28.3.9.1.16.999 poor quality 3 seqs prokMSA_id:022952 AF392652 clone CDB6 prokMSA_id:071770 AJ431303 clone 1_43 prokMSA_id:008009 M36028 Legionella hackeliae str. Lansing-2 NCTC 11979. 2.28.3.9.1.17 LEG.JORDANIS_SUBGROUP 4 seqs 2.28.3.9.1.17.001 OTU 1 seq prokMSA_id:008014 X73396 Legionella jordanis ATCC 33623 . 2.28.3.9.1.17.002 OTU 1 seq prokMSA_id:008013 Z32667 Legionella jordanis NCTC 11533. 2.28.3.9.1.17.003 OTU 1 seq prokMSA_id:029912 AF422613 clone t043 2.28.3.9.1.17.999 poor quality 1 seq prokMSA_id:032611 AJ311441 maize rhizosphere c8_68 2.28.3.9.2 COX.BURNETII_SUBGROUP 79 seqs 2.28.3.9.2.001 OTU 1 seq prokMSA_id:008029 AJ241018 clone Sva0714. 2.28.3.9.2.002 OTU 1 seq prokMSA_id:008028 U97547 Rickettsiella grylli. 2.28.3.9.2.003 OTU 1 seq prokMSA_id:008026 AB015255 str. JTB256. 2.28.3.9.2.004 OTU 11 seqs prokMSA_id:046260 AB001521 Ornithodoros moubata symbiote A prokMSA_id:084670 AE016960 Coxiella burnetii strain RSA 493 section 1 of 7 of the complete genome prokMSA_id:008024 D89791 Coxiella burnetii str. Ohio. prokMSA_id:008025 D89792 Coxiella burnetii str. 607. prokMSA_id:008018 D89795 Coxiella burnetii str. 58T. prokMSA_id:008019 D89796 Coxiella burnetii str. 50F. prokMSA_id:008020 D89797 Coxiella burnetii str. Q212. prokMSA_id:008021 D89798 Coxiella burnetii str. VR730. prokMSA_id:008022 D89799 Coxiella burnetii str. 1M. prokMSA_id:008023 D89800 Coxiella burnetii str. 27M. prokMSA_id:083477 NC_002971 Coxiella burnetii RSA 493 complete genome 2.28.3.9.2.005 OTU 1 seq prokMSA_id:008017 D84559 Coxiella sp. 2.28.3.9.2.006 OTU 1 seq prokMSA_id:008016 AB001519 unnamed organism. 2.28.3.9.2.007 OTU 1 seq prokMSA_id:016391 AF383621 Rickettsiella sp. GSU 2.28.3.9.2.008 OTU 10 seqs prokMSA_id:045382 AB058907 Legionella sp. IY2 prokMSA_id:033240 AB058908 Legionella sp. IUA36 prokMSA_id:019657 AB058909 Legionella sp. IA55 prokMSA_id:049165 AB058910 Legionella sp. II29 prokMSA_id:019290 AB058911 Legionella sp. IUB43 prokMSA_id:049724 AB058914 Legionella sp. OY6 prokMSA_id:024832 AB058915 Legionella sp. OUA34 prokMSA_id:022506 AB058916 Legionella sp. OA32 prokMSA_id:041926 AB058917 Legionella sp. OI36 prokMSA_id:051890 AB058918 Legionella sp. OUB41 2.28.3.9.2.009 OTU 1 seq prokMSA_id:027722 AF257292 marine gamma DHB-2 2.28.3.9.2.010 OTU 1 seq prokMSA_id:030360 AF188169 gamma KEppiB7 2.28.3.9.2.011 OTU 1 seq prokMSA_id:035529 AF424152 gamma MERTZ_0CM_353 2.28.3.9.2.012 OTU 1 seq prokMSA_id:045765 AF418944 clone HTA4 2.28.3.9.2.013 OTU 1 seq prokMSA_id:047013 AJ318123 gamma clone BIfciii1 2.28.3.9.2.014 OTU 1 seq prokMSA_id:048746 AF424087 gamma MERTZ_2CM_122 2.28.3.9.2.015 OTU 1 seq prokMSA_id:050747 AF327558 Endosymbiont of Folsomia candida small subunit 2.28.3.9.2.016 OTU 1 seq prokMSA_id:051432 AF424176 gamma MERTZ_21CM_277 2.28.3.9.2.017 OTU 1 seq prokMSA_id:063670 AF521888 Symbiont of Haemaphysalis concinnae 2.28.3.9.2.018 OTU 1 seq prokMSA_id:063851 AF452606 gamma clone ML1218M-31 2.28.3.9.2.019 OTU 1 seq prokMSA_id:066628 AY094501 gamma clone 8-10 2.28.3.9.2.020 OTU 1 seq prokMSA_id:073506 AF286124 from Cecidotrioza sozanica 2.28.3.9.2.021 OTU 1 seq prokMSA_id:074455 AF333532 gamma clone R14 2.28.3.9.2.022 OTU 1 seq prokMSA_id:074504 AF235121 gamma KTc0924 2.28.3.9.2.023 OTU 1 seq prokMSA_id:079079 AJ536861 gamma clone JG30-KF-C15 2.28.3.9.2.024 OTU 1 seq prokMSA_id:079344 AY187336 clone csbio160361 2.28.3.9.2.025 OTU 1 seq prokMSA_id:085743 AY226212 gamma clone ABBB-50 2.28.3.9.2.999 poor quality 35 seqs prokMSA_id:044753 AF078298 Grassland soil clone saf3_109 prokMSA_id:045631 AF114631 gamma SUR-FREE-20 prokMSA_id:036117 AF194186 n6r prokMSA_id:046078 AF226208 maize root Zmrc163 prokMSA_id:021969 AF280957 clone JS18 prokMSA_id:068060 AF365688 clone BT60DS1BB5 prokMSA_id:068056 AF365693 clone BT60DS1BC12 prokMSA_id:067981 AF365783 clone BM89PA1BbB8 prokMSA_id:036158 AF428851 clone CR98-24-45 prokMSA_id:042185 AF429144 clone CR99-24-34 prokMSA_id:075223 AF431338 gamma clone C17.28WL prokMSA_id:069952 AF484071 Coxiella sp. clone 127 prokMSA_id:069277 AF484072 Coxiella sp. clone 150 prokMSA_id:074360 AF484073 Coxiella sp. clone 163 prokMSA_id:071627 AF484074 Coxiella sp. clone 165 prokMSA_id:069163 AF484075 Coxiella sp. clone 198 prokMSA_id:071470 AF484076 Coxiella sp. clone 214 prokMSA_id:072558 AF484077 Coxiella sp. clone 248 prokMSA_id:073488 AF484078 Coxiella sp. clone 259 prokMSA_id:058829 AF534240 gamma clone gamma cg1 prokMSA_id:058827 AF534242 gamma clone gamma cg3 prokMSA_id:058825 AF534243 gamma clone gamma cg4 prokMSA_id:056304 AF534246 gamma clone gamma cg7 prokMSA_id:070952 AJ437470 clone 2_1_21 prokMSA_id:078029 AJ508161 clone J2_18 prokMSA_id:056922 AJ518670 clone Sai2P2-72 prokMSA_id:026519 AY038376 gamma clone CD3C5 prokMSA_id:066966 AY038483 clone CD1F9 prokMSA_id:080310 AY192312 gamma clone S3-2D prokMSA_id:080522 AY193040 clone FSA8 prokMSA_id:086416 AY226245 gamma clone BBBB-38 prokMSA_id:093542 AY357985 gamma cEV46 prokMSA_id:094052 AY361916 clone P8-GEN-3 prokMSA_id:008027 L35468 clone SAR 145. prokMSA_id:008015 M21291 Coxiella burnetii str. Q177. 2.28.3.10 METHYLOMONAS_GROUP 375 seqs 2.28.3.10.1 ENDOSYMBIONT_OF_HELIOTHIS 3 seqs 2.28.3.10.1.001 OTU 1 seq prokMSA_id:008030 L22481 endosymbiont of Heliothis virescens testis. 2.28.3.10.1.999 poor quality 2 seqs prokMSA_id:081646 AY187397 clone SA13 prokMSA_id:093586 AY368591 Asaia bogorensis 2.28.3.10.2 STR.KI89C_SUBGROUP 5 seqs 2.28.3.10.2.999 poor quality 5 seqs prokMSA_id:024320 AB023614 NIC027 prokMSA_id:068212 AF365511 clone BM89MF5BD6 prokMSA_id:008033 D32219 str. KI89C. prokMSA_id:008031 D32220 str. KI89B. prokMSA_id:008032 D32221 unnamed gamma . 2.28.3.10.3 MLC.CAPSULATUS_SUBGROUP 84 seqs 2.28.3.10.3.001 OTU 1 seq prokMSA_id:008047 U89298 Methylocaldum gracile str. VKM-14L. 2.28.3.10.3.002 OTU 2 seqs prokMSA_id:008046 U89297 Methylocaldum tepidum str. LK6 . prokMSA_id:072929 U89297 Methylocaldum tepidum complete 2.28.3.10.3.003 OTU 1 seq prokMSA_id:008045 U89300 Methylocaldum szegediense str. OR2 . 2.28.3.10.3.004 OTU 1 seq prokMSA_id:008040 X72769 Methylococcus sp. str. JB140. 2.28.3.10.3.005 OTU 2 seqs prokMSA_id:008037 X72770 Methylococcus capsulatus str. Texas ACM 1292. prokMSA_id:008036 X72771 Methylococcus capsulatus str. Bath ACM 3302. 2.28.3.10.3.006 OTU 1 seq prokMSA_id:008035 X73819 Methylococcus thermophilus str. IMV-B-3037. 2.28.3.10.3.007 OTU 1 seq prokMSA_id:017480 AF417909 antarctic soil clone bh4.40 2.28.3.10.3.008 OTU 1 seq prokMSA_id:021269 AJ344197 isolate BUG-114 2.28.3.10.3.009 OTU 1 seq prokMSA_id:021930 AF351230 gamma clone 4-25 2.28.3.10.3.010 OTU 6 seqs prokMSA_id:058387 AF361089 clone SBRQ171 prokMSA_id:058386 AF361090 clone SBRQ185 prokMSA_id:058385 AF361091 clone SBRQ191 prokMSA_id:056552 AF361092 clone SBRQ157 prokMSA_id:058384 AF361093 clone SBRQ196 prokMSA_id:056539 AF361094 clone SBRQ152 2.28.3.10.3.011 OTU 1 seq prokMSA_id:031944 AF417887 antarctic soil clone bh2.44 2.28.3.10.3.012 OTU 1 seq prokMSA_id:058508 AB072722 clone:pHAuB-P 2.28.3.10.3.013 OTU 1 seq prokMSA_id:038005 AF194403 gamma kpa93f 2.28.3.10.3.014 OTU 2 seqs prokMSA_id:053433 AJ299982 gamma M84-D38 clone M84-D38 prokMSA_id:040198 AJ299983 gamma M84-D36 clone M84-D36 2.28.3.10.3.015 OTU 1 seq prokMSA_id:040285 AY063505 Methylococcaceae clone GW70-10-16 2.28.3.10.3.016 OTU 1 seq prokMSA_id:057801 AY098900 clone SBRL2_40 2.28.3.10.3.017 OTU 1 seq prokMSA_id:057791 AY098909 clone SBRL2_19 2.28.3.10.3.018 OTU 1 seq prokMSA_id:055626 AF526927 clone T5-3 rrn 2.28.3.10.3.019 OTU 1 seq prokMSA_id:054364 AJ299981 gamma M90-D37 clone M90-D37 2.28.3.10.3.020 OTU 1 seq prokMSA_id:062635 AJ504486 isolate P1CN15 2.28.3.10.3.021 OTU 1 seq prokMSA_id:067286 AF495402 clone F10.41 2.28.3.10.3.022 OTU 2 seqs prokMSA_id:071299 AF215632 Methylocaldum sp. dr65 complete prokMSA_id:073918 AF215633 Methylocaldum sp. r6f complete 2.28.3.10.3.023 OTU 1 seq prokMSA_id:080228 AY193138 clone Bol92 2.28.3.10.3.024 OTU 1 seq prokMSA_id:081983 AJ548906 Thiobacillus sp. clone BIOEST-17 2.28.3.10.3.025 OTU 1 seq prokMSA_id:088401 AY327173 clone ZB81 2.28.3.10.3.026 OTU 1 seq prokMSA_id:089372 AY327181 clone ZB78 2.28.3.10.3.027 OTU 1 seq prokMSA_id:093189 AJ581598 gamma clone KCM-B-23 2.28.3.10.3.028 OTU 1 seq prokMSA_id:093272 AJ581594 gamma clone KCM-B-13 2.28.3.10.3.029 OTU 1 seq prokMSA_id:093549 AJ581837 Methylohalobium crimense strain 10Ki 2.28.3.10.3.030 OTU 1 seq prokMSA_id:094093 AJ581597 gamma clone KCM-B-112 2.28.3.10.3.031 OTU 1 seq prokMSA_id:096364 AY381287 clone Lgja-53 2.28.3.10.3.999 poor quality 44 seqs prokMSA_id:037797 AB052105 gamma prokMSA_id:049218 AF183829 Methanotroph FL-DIKO prokMSA_id:071446 AF245329 SA14 prokMSA_id:034993 AF281091 sp. sbr-gs1 prokMSA_id:036913 AF281093 sp. sbr-gs3 prokMSA_id:036026 AF281094 sp. sbr-gs4 prokMSA_id:032327 AF281096 sp. sbr-gs6 prokMSA_id:072029 AF281097 sp. sbr-gs7 prokMSA_id:048576 AF281099 sp. sbr-gs9 prokMSA_id:068127 AF365609 clone BT60MF7BB9 prokMSA_id:068068 AF365680 clone BT60DS1BA2 prokMSA_id:034345 AF424092 gamma MERTZ_2CM_166 prokMSA_id:051087 AF429133 clone CR99-24-23 prokMSA_id:056216 AF486572 Methylococcus capsulatus strain 114 prokMSA_id:060505 AF486573 Methylococcus capsulatus strain 115 prokMSA_id:073754 AF531001 Bacteroidetes zo30 prokMSA_id:074185 AJ224482 strain ST62 prokMSA_id:025891 AJ232876 clone LRE3 prokMSA_id:062624 AJ504489 isolate P1CN18 prokMSA_id:062594 AJ504523 isolate P1CN62 prokMSA_id:062587 AJ504532 isolate P1CN74 prokMSA_id:062579 AJ504543 isolate P1CN88 prokMSA_id:062555 AJ504567 isolate P2CN18 prokMSA_id:062530 AJ504601 isolate P2CN61 prokMSA_id:096636 AJ583807 clone DGGE band 19 prokMSA_id:057802 AY098897 clone SBRL1_22 prokMSA_id:057804 AY098899 clone SBRC_1 prokMSA_id:057799 AY098902 clone SBRC_60 prokMSA_id:057790 AY098910 clone SBRL2_8 prokMSA_id:057787 AY098911 clone SBRL2_36 prokMSA_id:057786 AY098912 clone SBRC_10 prokMSA_id:057788 AY098913 clone SBRC_16 prokMSA_id:072271 AY144237 gamma clone LTUG00556 prokMSA_id:071798 AY144254 gamma clone LTUG07356 prokMSA_id:073621 AY144261 gamma clone LTUG09056 prokMSA_id:088304 AY327180 clone ZB77 prokMSA_id:008042 L20842 Methylococcus capsulatus str. Bath ATCC 33009. prokMSA_id:008034 M29022 Methylomonas methanica str. 81Z. prokMSA_id:008041 M29023 Methylococcus capsulatus str. BATH. prokMSA_id:050792 U85133 gamma clone ACK-DH11 prokMSA_id:008039 U89299 str. HB. prokMSA_id:008044 X91296 clone G44. prokMSA_id:008038 Y09280 Thiobacillus baregensis. prokMSA_id:008043 Z69334 str. s30. 2.28.3.10.4 MLM.METHANICA_SUBGROUP 264 seqs 2.28.3.10.4.004 OTU 13 seqs prokMSA_id:008096 AF016981 Methylobacter BB5.1. prokMSA_id:008088 AF150772 Methylobacter Methylobacter pAMC405. prokMSA_id:008094 AF150773 Methylobacter Methylobacter pAMC415. prokMSA_id:008093 AF150774 Methylobacter Methylobacter pAMC417. prokMSA_id:008087 AF150784 Methylobacter LW1 str. LW1. prokMSA_id:040043 AF304195 Methylobacter luteus NCIMB 11914 complete prokMSA_id:037065 AF304197 Methylobacter marinus A45 complete prokMSA_id:034320 AY063504 Methylococcaceae clone GW60-13-3 prokMSA_id:038673 AY063506 Methylococcaceae clone GW70-10-2 prokMSA_id:040524 AY063507 Methylococcaceae clone GW70-10-42 prokMSA_id:018405 AY063508 Methylococcaceae clone GW70-20-28 prokMSA_id:048295 AY063509 Methylococcaceae clone GW70-20-4 prokMSA_id:054307 AY063510 Methylococcaceae clone GW70-20-8 2.28.3.10.4.005 OTU 1 seq prokMSA_id:008095 U62831 clone RB07. 2.28.3.10.4.006 OTU 1 seq prokMSA_id:008092 AF150775 Methylobacter Methylobacter pAMC419. 2.28.3.10.4.007 OTU 2 seqs prokMSA_id:008086 X72772 Methylobacter luteus ACM 3304. prokMSA_id:008091 X72773 Methylobacter whittenburyi ACM 3309 . 2.28.3.10.4.008 OTU 2 seqs prokMSA_id:008084 X72776 Methylomonas aurantiaca str. JB103 phenon3 ACM 3406 . prokMSA_id:008090 X72778 Methylomonas fodinarum str. JB13 phenon2 ACM 3268 . 2.28.3.10.4.010 OTU 2 seqs prokMSA_id:008083 AF150776 Methylomicrobium Methylomicrobium pAMC421. prokMSA_id:008082 AF150783 Methylomicrobium Methylomicrobium pAMC466. 2.28.3.10.4.011 OTU 2 seqs prokMSA_id:008081 X72767 Methylomicrobium agile str. A30 ACM 3308 . prokMSA_id:008050 X72777 Methylomicrobium album str. VKM-BG8 ACM 3314 . 2.28.3.10.4.012 OTU 6 seqs prokMSA_id:008060 AF096091 Methylomicrobium alcaliphilum str. 5z. prokMSA_id:081028 AF453550 gamma clone ML513M-26 prokMSA_id:070707 AJ132384 strain AMO 1 prokMSA_id:008063 D89279 Methylomicrobium NI str. NI. prokMSA_id:008058 L35540 Methylomicrobium pelagicum. prokMSA_id:008080 U05570 Methylomicrobium pelagicum. 2.28.3.10.4.014 OTU 1 seq prokMSA_id:008076 AJ231066 unnamed organism. 2.28.3.10.4.016 OTU 21 seqs prokMSA_id:008078 AB015603 Methylomonas sp. str. KSPIII. prokMSA_id:008079 AB015604 Methylomonas sp. str. KSPII. prokMSA_id:008074 AF150777 Methylomonas Methylomonas pAMC434. prokMSA_id:008073 AF150778 Methylomonas Methylomonas pAMC435. prokMSA_id:008072 AF150782 Methylomonas Methylomonas pAMC462. prokMSA_id:008071 AF150792 Methylomonas LW13 str. LW13. prokMSA_id:008070 AF150794 Methylomonas LW15 str. LW15. prokMSA_id:008069 AF150796 Methylomonas LW16 str. LW16. prokMSA_id:008068 AF150798 Methylomonas LW19 str. LW19. prokMSA_id:008067 AF150800 Methylomonas LW21 str. LW21. prokMSA_id:008066 AF150806 Methylomonas methanica. prokMSA_id:045263 AF304196 Methylomonas methanica S1 complete prokMSA_id:023242 AJ299974 gamma M84-D41 clone M84-D41 prokMSA_id:042324 AJ299976 gamma M90-D34 clone M90-D34 prokMSA_id:095080 AY203727 Methylomonas sp. clone 9E-T1H1 prokMSA_id:094798 AY203728 Methylomonas sp. clone 8GW-T1CC43 prokMSA_id:094583 AY203729 Methylomonas sp. clone 17E-T1I3 prokMSA_id:094577 AY203730 Methylomonas sp. clone 112E-T1I31 prokMSA_id:094337 AY203731 Methylomonas sp. clone 112E-T1L1 prokMSA_id:094540 AY203732 Methylomonas sp. clone 112E-T1M5 prokMSA_id:094827 AY203733 Methylomonas sp. clone 112E-T1N38 2.28.3.10.4.017 OTU 4 seqs prokMSA_id:008061 AF096092 Methylomicrobium buryaticum str. 5G. prokMSA_id:008062 AF096093 Methylomicrobium buryaticum str. 7G. prokMSA_id:025325 AF194539 Methylomicrobium sp. 4G prokMSA_id:039461 AF307138 Methylomicrobium sp. 5B complete 2.28.3.10.4.018 OTU 1 seq prokMSA_id:008059 X72775 Methylomicrobium pelagicum ACM 3505. 2.28.3.10.4.019 OTU 2 seqs prokMSA_id:008055 AF150807 Methylomonas rubra. prokMSA_id:038046 AF304194 Methylomonas rubra NCIMB 11913 complete 2.28.3.10.4.020 OTU 3 seqs prokMSA_id:008051 AF177296 str. AML-C10. prokMSA_id:008052 AF177297 str. AML-D4. prokMSA_id:072594 AF177310 I methanotroph T1-06 2.28.3.10.4.021 OTU 1 seq prokMSA_id:017922 AF177308 I methanotroph T1-04 2.28.3.10.4.022 OTU 1 seq prokMSA_id:019000 AF424165 gamma MERTZ_21CM_119 2.28.3.10.4.023 OTU 1 seq prokMSA_id:020100 AB022612 gamma SA51 2.28.3.10.4.024 OTU 1 seq prokMSA_id:020195 AF424116 gamma MERTZ_2CM_276 2.28.3.10.4.025 OTU 1 seq prokMSA_id:020538 AF177311 I methanotroph T1-08 2.28.3.10.4.027 OTU 1 seq prokMSA_id:022448 AF389442 clone SRS62DBA12 2.28.3.10.4.028 OTU 1 seq prokMSA_id:024674 AF424101 gamma MERTZ_2CM_211 2.28.3.10.4.029 OTU 1 seq prokMSA_id:024860 AJ007658 clone 1605-59 2.28.3.10.4.030 OTU 1 seq prokMSA_id:056096 AY094499 gamma clone 1-27 2.28.3.10.4.032 OTU 17 seqs prokMSA_id:008097 AF131868 Methylobacter T20 str. T20. prokMSA_id:008098 AF152597 Methylobacter psychrophilus str. Z-0021. prokMSA_id:041292 AF351239 gamma clone 8-65 prokMSA_id:031630 AF358020 clone LO13.6 prokMSA_id:025336 AF389440 clone SRS62DBA10 prokMSA_id:042054 AF389447 clone SRS62DBA37 prokMSA_id:042401 AJ290055 FukuN13 prokMSA_id:050631 AJ299969 gamma M84-D33 clone M84-D33 prokMSA_id:040391 AJ299973 gamma M84-D39 clone M84-D39 prokMSA_id:043109 AJ414655 Methylobacter sp. SV96 strain SV96 prokMSA_id:094548 AY203742 Methylobacter sp. clone 8GW-T1A5 prokMSA_id:095091 AY203743 Methylobacter sp. clone 8nGW-T1P101 prokMSA_id:094339 AY203744 Methylobacter sp. clone 8nGW-T1Q150 prokMSA_id:094514 AY203746 Methylobacter sp. clone 8GW-T1BB48 prokMSA_id:094301 AY203747 Methylobacter sp. clone 17nGW-T1D229 prokMSA_id:095136 AY203748 Methylobacter sp. clone 17E-T1P9 prokMSA_id:093590 AY360488 clone BSB10-115m 2.28.3.10.4.033 OTU 1 seq prokMSA_id:029378 AF211280 gamma CE102 2.28.3.10.4.034 OTU 1 seq prokMSA_id:029479 AF224870 clone Car731c 2.28.3.10.4.036 OTU 3 seqs prokMSA_id:029488 AF177307 I methanotroph T1-03 prokMSA_id:022040 AY007295 Methylobacter sp. LW12 prokMSA_id:040125 AY007296 Methylobacter sp. LW14 2.28.3.10.4.037 OTU 1 seq prokMSA_id:029708 AF277471 Marinomonas SIC.163 2.28.3.10.4.038 OTU 2 seqs prokMSA_id:051129 AF177313 I methanotroph T1-13 prokMSA_id:029983 AF177314 I methanotroph T1-14 2.28.3.10.4.039 OTU 1 seq prokMSA_id:033214 AF177309 I methanotroph T1-05 2.28.3.10.4.040 OTU 1 seq prokMSA_id:033884 AJ299979 gamma M90-D1 clone M90-D1 2.28.3.10.4.041 OTU 1 seq prokMSA_id:034897 AF424057 gamma MERTZ_2CM_5 2.28.3.10.4.042 OTU 1 seq prokMSA_id:036761 AF424086 gamma MERTZ_2CM_121 2.28.3.10.4.043 OTU 1 seq prokMSA_id:041887 AF177312 I methanotroph T1-09 2.28.3.10.4.044 OTU 1 seq prokMSA_id:042477 AF424135 gamma MERTZ_0CM_61 2.28.3.10.4.045 OTU 1 seq prokMSA_id:043098 AJ299975 gamma M84-D46 clone M84-D46 2.28.3.10.4.046 OTU 1 seq prokMSA_id:045451 AJ299977 gamma M84-D45 clone M84-D45 2.28.3.10.4.047 OTU 1 seq prokMSA_id:047576 AF296226 SY6-109 2.28.3.10.4.048 OTU 1 seq prokMSA_id:047633 AF296223 SY6-106 2.28.3.10.4.049 OTU 1 seq prokMSA_id:055618 AF499346 clone JCL9-24 2.28.3.10.4.050 OTU 1 seq prokMSA_id:048494 AF351235 gamma clone 8-4 2.28.3.10.4.051 OTU 1 seq prokMSA_id:050819 AJ299978 gamma M84-D42 clone M84-D42 2.28.3.10.4.052 OTU 1 seq prokMSA_id:052100 AJ299970 gamma M90-D9 clone M90-D9 2.28.3.10.4.054 OTU 3 seqs prokMSA_id:008089 AF154089 clone BPC036. prokMSA_id:077645 AJ535246 gamma clone Hyd89-87 prokMSA_id:059771 AY133425 clone BB2_110 2.28.3.10.4.055 OTU 1 seq prokMSA_id:063575 AB069795 clone:CS5.15 2.28.3.10.4.056 OTU 1 seq prokMSA_id:064552 AY102612 Caedibacter taeniospiralis 2.28.3.10.4.057 OTU 1 seq prokMSA_id:067240 AF495887 Methylobacter sp. HG-1 2.28.3.10.4.058 OTU 1 seq prokMSA_id:077724 AJ535221 gamma clone Hyd24-01 2.28.3.10.4.059 OTU 1 seq prokMSA_id:078157 AY171372 clone s11 2.28.3.10.4.060 OTU 1 seq prokMSA_id:079672 AB094894 clone:OHKB7.30 2.28.3.10.4.061 OTU 1 seq prokMSA_id:079687 AB094835 clone:OHKB4.14 2.28.3.10.4.062 OTU 1 seq prokMSA_id:079752 AB094908 clone:OHKB7.76 2.28.3.10.4.063 OTU 1 seq prokMSA_id:079821 AB094884 clone:OHKB7.16 2.28.3.10.4.064 OTU 1 seq prokMSA_id:079856 AB094852 clone:OHKB4.52 2.28.3.10.4.065 OTU 1 seq prokMSA_id:080123 AB094847 clone:OHKB4.45 2.28.3.10.4.066 OTU 1 seq prokMSA_id:080198 AB094912 clone:OHKB7.86 2.28.3.10.4.067 OTU 1 seq prokMSA_id:080207 AB094842 clone:OHKB4.35 2.28.3.10.4.068 OTU 1 seq prokMSA_id:080209 AB094839 clone:OHKB4.23 2.28.3.10.4.069 OTU 1 seq prokMSA_id:080303 AB094836 clone:OHKB4.16 2.28.3.10.4.070 OTU 1 seq prokMSA_id:080346 AB094854 clone:OHKB4.58 2.28.3.10.4.071 OTU 1 seq prokMSA_id:080377 AB094904 clone:OHKB7.57 2.28.3.10.4.072 OTU 1 seq prokMSA_id:080473 AB094840 clone:OHKB4.25 2.28.3.10.4.073 OTU 1 seq prokMSA_id:080646 AY192313 gamma clone S1a-7A 2.28.3.10.4.074 OTU 1 seq prokMSA_id:080656 AB094886 clone:OHKB7.19 2.28.3.10.4.075 OTU 1 seq prokMSA_id:080963 AB094902 clone:OHKB7.53 2.28.3.10.4.076 OTU 1 seq prokMSA_id:081366 AY218626 clone KD4-117 2.28.3.10.4.077 OTU 1 seq prokMSA_id:087299 AY279071 clone CS049 2.28.3.10.4.078 OTU 1 seq prokMSA_id:088016 AY279067 clone CS043 2.28.3.10.4.079 OTU 1 seq prokMSA_id:088961 AY328767 DSSD69 2.28.3.10.4.080 OTU 1 seq prokMSA_id:092023 AY354155 clone pIR3BD07 2.28.3.10.4.081 OTU 5 seqs prokMSA_id:098216 AY225630 gamma clone AT-s43 prokMSA_id:092139 AY354136 clone pIR3BE06 prokMSA_id:092392 AY354137 clone pIR3BC07 prokMSA_id:092380 AY354156 clone pIR3BH01 prokMSA_id:092047 AY354157 clone pIR3BE10 2.28.3.10.4.082 OTU 1 seq prokMSA_id:092433 AY354127 clone pIR3BE04 2.28.3.10.4.083 OTU 1 seq prokMSA_id:092458 AY354126 clone pIR3BF09 2.28.3.10.4.084 OTU 1 seq prokMSA_id:092586 AY354131 clone pIR3BC01 2.28.3.10.4.085 OTU 1 seq prokMSA_id:093112 AY354851 gamma clone PLY-P2-65 2.28.3.10.4.086 OTU 3 seqs prokMSA_id:094338 AY203735 Methylococcaceae clone 9nGW-T1L15 prokMSA_id:094317 AY203736 Methylococcaceae clone 9nGW-T1O26 prokMSA_id:094533 AY203741 Methylococcaceae clone 17nGW-T1O240 2.28.3.10.4.087 OTU 1 seq prokMSA_id:094633 AY203737 Methylococcaceae clone 8nGW-T1B139 2.28.3.10.4.088 OTU 1 seq prokMSA_id:094686 AY203745 Methylobacter sp. clone 8nGW-T1AJ111 2.28.3.10.4.089 OTU 1 seq prokMSA_id:094840 AJ583183 gamma- clone S15B-MN136 2.28.3.10.4.090 OTU 1 seq prokMSA_id:094857 AY203739 Methylococcaceae clone 8nGW-T1Z116 2.28.3.10.4.091 OTU 1 seq prokMSA_id:094873 AY203734 Methylococcaceae clone 9nGW-T1I17 2.28.3.10.4.092 OTU 2 seqs prokMSA_id:094977 AY203738 Methylococcaceae clone 8nGW-T1R146 prokMSA_id:095086 AY203740 Methylococcaceae clone 8GW-T1EE40 2.28.3.10.4.093 OTU 1 seq prokMSA_id:096770 AY375103 clone C79 2.28.3.10.4.094 OTU 1 seq prokMSA_id:097305 AY424818 clone mv13.1 2.28.3.10.4.999 poor quality 105 seqs prokMSA_id:008077 AB015602 Methylomonas KSWIII str. KSWIII. prokMSA_id:054332 AB040500 I methanotroph metano-I prokMSA_id:019235 AB057751 Oligobrachia mashikoi endosymbiont prokMSA_id:088671 AB111843 prokMSA_id:088474 AB111844 prokMSA_id:092803 AB116927 gamma clone:LB6 prokMSA_id:046394 AF107333 freshwater LCK-65 prokMSA_id:047052 AF141428 gamma clone CR-PA40 prokMSA_id:036494 AF182496 I methanotroph R1 prokMSA_id:049658 AF182497 I methanotroph R2 prokMSA_id:049625 AF182498 I methanotroph R3 prokMSA_id:031246 AF182499 I methanotroph R4 prokMSA_id:033555 AF182500 I methanotroph R5 prokMSA_id:021538 AF182501 I methanotroph R6 prokMSA_id:020834 AF182502 I methanotroph R7 prokMSA_id:020294 AF182503 I methanotroph R8 prokMSA_id:036957 AF182504 I methanotroph R9 prokMSA_id:040577 AF182505 I methanotroph R14 prokMSA_id:050754 AF182506 I methanotroph R16 prokMSA_id:028983 AF182507 I methanotroph R17 prokMSA_id:008056 AF185612 str. Pen2. prokMSA_id:047250 AF195456 gamma kpj323f prokMSA_id:031845 AF223287 gamma B2M15 prokMSA_id:017745 AF296196 SY6-28 prokMSA_id:074666 AF296199 SY6-44 prokMSA_id:024127 AF296200 SY6-47 prokMSA_id:046686 AF296218 SY6-100 prokMSA_id:038073 AF358005 clone LO13.13 prokMSA_id:067940 AF365836 clone BT60PA10BD7 prokMSA_id:046311 AF389435 clone SRS62DBA01 prokMSA_id:051163 AF389445 clone SRS62DBA24 prokMSA_id:074662 AF389446 clone SRS62DBA32 prokMSA_id:064822 AF434112 gamma clone P3-1-27 prokMSA_id:064821 AF434113 gamma clone P3-1-30 prokMSA_id:067132 AF499319 clone JCL4-50 prokMSA_id:067131 AF499320 clone JCL4-60 prokMSA_id:067110 AF499345 clone JCL9-91 prokMSA_id:067080 AF499386 clone JCL1-30 prokMSA_id:067065 AF499402 clone BL-74 prokMSA_id:067063 AF499403 clone BL-113 prokMSA_id:055881 AF499404 clone BL-24 prokMSA_id:067064 AF499405 clone BL-26 prokMSA_id:067062 AF499406 clone BL-91 prokMSA_id:072876 AJ007649 clone 1405-1 prokMSA_id:008057 AJ131369 Methylomonas scandinavica. prokMSA_id:008075 AJ224483 str. FE627. prokMSA_id:052473 AJ231048 gamma clone 3 prokMSA_id:032325 AJ231054 gamma clone 9 prokMSA_id:050308 AJ231059 gamma clone 14 prokMSA_id:036719 AJ231060 gamma clone 15 prokMSA_id:049188 AJ231064 gamma clone 18 prokMSA_id:071039 AJ289936 1405-2 prokMSA_id:070720 AJ289939 1405-48 prokMSA_id:046029 AJ299971 gamma M70-D2 clone M70-D2 prokMSA_id:045150 AJ299972 gamma M70-D6 clone M70-D6 prokMSA_id:050216 AJ299980 gamma M70-D4 clone M70-D4 prokMSA_id:053247 AJ299984 gamma M70-C30 clone M70-C30 prokMSA_id:031768 AJ299985 gamma M70-C5 clone M70-C5 prokMSA_id:017607 AJ299986 gamma M70-C40 clone M70-C40 prokMSA_id:033886 AJ299987 gamma M70-C8 clone M70-C8 prokMSA_id:034618 AJ299988 gamma M70-C7 clone M70-C7 prokMSA_id:027221 AJ299989 gamma M70-C14 clone M70-C14 prokMSA_id:070516 AJ311505 gamma Sau 4 prokMSA_id:061754 AJ416192 clone Sta1-41 prokMSA_id:024298 AJ416672 gamma clone env.S084 prokMSA_id:022152 AJ416675 gamma clone env.S131 prokMSA_id:057196 AJ518315 clone Neu2P1-26 prokMSA_id:056987 AJ518582 clone Qui4P2-41 prokMSA_id:056967 AJ518609 clone Qui4P2-84 prokMSA_id:056962 AJ518612 clone Qui4P2-88 prokMSA_id:056939 AJ518650 clone Sai2P2-15 prokMSA_id:056902 AJ518690 clone Sai4P1-71 prokMSA_id:056903 AJ518696 clone Sai4P1-79 prokMSA_id:061427 AY043809 gamma clone NMS8.31WL prokMSA_id:067223 AY090648 Methylobacter sp. clone B21 prokMSA_id:067218 AY090651 Methylobacter sp. clone M21 prokMSA_id:067221 AY090652 Methylobacter sp. clone B1 prokMSA_id:067215 AY090653 Methylobacter sp. clone B2 prokMSA_id:067216 AY090654 Methylobacter sp. clone B3 prokMSA_id:055610 AY090657 Methylobacter sp. clone C6 prokMSA_id:067213 AY090658 Methylobacter sp. clone M2 prokMSA_id:067212 AY090659 Methylobacter sp. clone M4 prokMSA_id:064946 AY095795 gamma CS4K-101 prokMSA_id:057621 AY119343 clone P3-1 prokMSA_id:059766 AY133426 clone BB2_147 prokMSA_id:072849 AY144242 gamma clone LTUG01714 prokMSA_id:069149 AY144246 gamma clone LTUG02414 prokMSA_id:071433 AY144249 gamma clone LTUG03414 prokMSA_id:070670 AY144250 gamma clone LTUG03614 prokMSA_id:069701 AY144256 gamma clone LTUG07556 prokMSA_id:080280 AY193092 clone PLTA4 prokMSA_id:082941 AY226554 I methanotroph clone MB10gamma-k5 prokMSA_id:084787 AY226555 I methanotroph clone MB10gamma-k1 prokMSA_id:083273 AY226556 I methanotroph clone MB10gamma-k2 prokMSA_id:084814 AY251208 gamma clone 1B_8 prokMSA_id:085448 AY251213 gamma clone 1B_18 prokMSA_id:083375 AY251218 gamma clone 1B_31 prokMSA_id:089024 AY289470 soil clone ABS-23 prokMSA_id:008085 L20840 Methylomonas methanica. prokMSA_id:008048 L20846 Methylomonas sp. str. 761 NCIMB 11931. prokMSA_id:008064 M95659 Methylomicrobium album str. BG8. prokMSA_id:008054 M95662 Methylomonas rubra str. VKM-15m NCIMB 11913. prokMSA_id:008065 NONE Methylomonas methanica str. S1 ATCC 35067 . prokMSA_id:008053 U43633 clone EH-5. prokMSA_id:008049 Z77456 str. 1-700 C32. 2.28.3.10.5 MBC.LUTEUS_SUBGROUP 19 seqs 2.28.3.10.5.001 OTU 1 seq prokMSA_id:008104 M95657 Methylobacter luteus NCIMB 11914 . 2.28.3.10.5.002 OTU 2 seqs prokMSA_id:008101 U67929 Methylosphaera hansonii str. AM6 ACAM 549 . prokMSA_id:008102 U77533 Methylosphaera hansonii str. AM11. 2.28.3.10.5.003 OTU 1 seq prokMSA_id:008100 U05595 symbiont of methanotrophic symbiont of Louisiana Slope mussel gill. 2.28.3.10.5.004 OTU 1 seq prokMSA_id:008099 U29164 symbiont of mussel methanotrophic gill. 2.28.3.10.5.005 OTU 1 seq prokMSA_id:016413 AB036710 Bathymodiolus platifrons methanotrophic gill symbiont 2.28.3.10.5.006 OTU 1 seq prokMSA_id:022752 AB056868 Bathymodiolus sp. symbiont I 2.28.3.10.5.007 OTU 2 seqs prokMSA_id:026347 AF469290 gamma clone 33-PA129B98 prokMSA_id:051649 AF469324 gamma clone CTD47B 2.28.3.10.5.008 OTU 1 seq prokMSA_id:027093 AB049742 Methylophaga sp. Loihi-Chm-2 2.28.3.10.5.009 OTU 1 seq prokMSA_id:036844 AB049743 Methylophaga sp. Loihi-Chm-3 2.28.3.10.5.010 OTU 1 seq prokMSA_id:050455 AB036711 Bathymodiolus japonicus methanotrophic gill symbiont 2.28.3.10.5.999 poor quality 7 seqs prokMSA_id:016464 AF469289 gamma clone 33-PA121B98 prokMSA_id:047725 AJ005876 clone TRS5 prokMSA_id:095851 AY291564 Group I methanotroph DGGE gel bands 1-3 prokMSA_id:008107 L20839 Methylobacter luteus str. 89. prokMSA_id:008106 L20841 Methylobacter whittenburyi str. 87. prokMSA_id:008105 L20843 Methylobacter whittenburyi NCIMB 11128. prokMSA_id:008103 M95658 Methylomonas sp. str. A4 M.Lidstrom. 2.28.3.11 OCEANOSPIRILLUM_GROUP 817 seqs 2.28.3.11.1 HALOMONAS_SUBGROUP 433 seqs 2.28.3.11.1.1 OSP.JAPONICUM_SUBGROUP 2 seqs 2.28.3.11.1.1.001 OTU 1 seq prokMSA_id:008109 AB006766 Oceanospirillum japonicum ATCC 19191 . 2.28.3.11.1.1.999 poor quality 1 seq prokMSA_id:008108 NONE Oceanospirillum japonicum ATCC 19191 . 2.28.3.11.1.2 MRS.MINUTULUM_SUBGROUP 11 seqs 2.28.3.11.1.2.003 OTU 6 seqs prokMSA_id:008111 AB006769 Marinospirillum minutulum ATCC 19193 . prokMSA_id:008112 AB006770 Marinospirillum megaterium. prokMSA_id:075532 AB098510 Marinospirillum insularis strain:K prokMSA_id:077112 AB098511 Marinospirillum insularis strain:P2 prokMSA_id:076474 AB098512 Marinospirillum insularis strain:O5 prokMSA_id:075039 AB098513 Marinospirillum insularis strain:NB11 2.28.3.11.1.2.004 OTU 1 seq prokMSA_id:033068 AF275713 Hailaer soda lake Z4 2.28.3.11.1.2.999 poor quality 4 seqs prokMSA_id:020678 AF175667 WJGRT-193 prokMSA_id:084940 AY241549 Marine HP4 prokMSA_id:008110 NONE Marinospirillum minutulum ATCC 19193 . prokMSA_id:008113 Z69307 str. s3. 2.28.3.11.1.3 ZYB.PALMAE_SUBGROUP 74 seqs 2.28.3.11.1.3.003 OTU 2 seqs prokMSA_id:045833 AF400483 Primary endosymbiont of Trialeurodes vaporariorum prokMSA_id:008116 Z11928 symbiont of Trialeurodes vaporariorum greenhouse whitefly. 2.28.3.11.1.3.004 OTU 1 seq prokMSA_id:008115 Y13299 Carnomonas nigrifaciens str. CTCBS1. 2.28.3.11.1.3.005 OTU 2 seqs prokMSA_id:055625 AF211871 Zymobacter palmae ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:008114 D14555 Zymobacter palmae str. T109 IAM 14233 . 2.28.3.11.1.3.007 OTU 22 seqs prokMSA_id:073878 AF211870 Primary endosymbiont of Bemisia argentifolii ; tRNA-Ile complete ; and 23S prokMSA_id:034503 AF400450 Primary endosymbiont of Bemisia tabaci clone AUS prokMSA_id:028101 AF400451 Primary endosymbiont of Bemisia tabaci clone AZA prokMSA_id:073656 AF400452 Primary endosymbiont of Bemisia tabaci clone AZB prokMSA_id:023722 AF400453 Primary endosymbiont of Bemisia tabaci clone CALA prokMSA_id:042418 AF400454 Primary endosymbiont of Bemisia tabaci clone CAMW15 prokMSA_id:021277 AF400455 Primary endosymbiont of Bemisia tabaci clone CULMX prokMSA_id:036279 AF400456 Primary endosymbiont of Bemisia tabaci clone BZ8 prokMSA_id:049640 AF400457 Primary endosymbiont of Bemisia tabaci clone IND34 prokMSA_id:029545 AF400458 Primary endosymbiont of Bemisia tabaci clone ISR5 prokMSA_id:031804 AF400459 Primary endosymbiont of Bemisia tabaci clone JATPR prokMSA_id:036379 AF400460 Primary endosymbiont of Bemisia tabaci clone KEN3 prokMSA_id:020005 AF400461 Primary endosymbiont of Bemisia tabaci clone MEX12 prokMSA_id:019222 AF400462 Primary endosymbiont of Bemisia tabaci clone MEX4 prokMSA_id:029094 AF400463 Primary endosymbiont of Bemisia tabaci clone TANZ15 prokMSA_id:043103 AF400464 Primary endosymbiont of Bemisia tabaci clone TANZ18 prokMSA_id:043537 AF400465 Primary endosymbiont of Bemisia tabaci clone TANZ3 prokMSA_id:036328 AF400466 Primary endosymbiont of Bemisia tabaci clone UG23 prokMSA_id:039721 AF400468 Primary endosymbiont of Bemisia tabaci clone UG39 prokMSA_id:088180 AY268081 Candidatus Portiera aleyrodidarum genomic prokMSA_id:094226 AY371188 Candidatus Portiera aleyrodidarum prokMSA_id:008121 Z11925 symbiont of Bemisia tabaci sweetpotato whitefly. 2.28.3.11.1.3.008 OTU 1 seq prokMSA_id:019432 AF286120 Primary endosymbiont of Cecidotrioza sozanica 2.28.3.11.1.3.009 OTU 1 seq prokMSA_id:022092 AF286119 Primary endosymbiont of Paratrioza cockerelli 2.28.3.11.1.3.010 OTU 1 seq prokMSA_id:025150 AF400482 Primary endosymbiont of Trialeurodes abutilonea 2.28.3.11.1.3.011 OTU 1 seq prokMSA_id:025332 AF286126 Secondary endosymbiont of Heteropsylla cubana 2.28.3.11.1.3.012 OTU 2 seqs prokMSA_id:053049 AF211147 Carsonella ruddii natural-host Psylla sp. 23S and genes prokMSA_id:027044 AF286117 Primary endosymbiont of Psylla ?floccosa 2.28.3.11.1.3.014 OTU 1 seq prokMSA_id:069260 AF211148 Carsonella ruddii natural-host Russelliana intermedia 23S and genes 2.28.3.11.1.3.015 OTU 2 seqs prokMSA_id:046529 AB038367 Mycetocyte endosymbiont of Diaphorina citri prokMSA_id:054539 AF211136 Carsonella ruddii natural-host Diaphorina citri 23S and genes 2.28.3.11.1.3.016 OTU 1 seq prokMSA_id:046892 AF400467 Primary endosymbiont of Bemisia tabaci clone UG26 2.28.3.11.1.3.017 OTU 1 seq prokMSA_id:051913 AF286123 Primary endosymbiont of Aleurodicus dugesii 2.28.3.11.1.3.018 OTU 1 seq prokMSA_id:052996 AF211144 Carsonella ruddii natural-host Panisopelma fulvescens 23S and genes 2.28.3.11.1.3.019 OTU 1 seq prokMSA_id:053577 AF243136 Carsonella ruddii endosymbiont of Arytaina genistae and 23S genes 2.28.3.11.1.3.020 OTU 1 seq prokMSA_id:053696 AF211137 Carsonella ruddii natural-host Glycaspis brimblecombei 23S and genes 2.28.3.11.1.3.024 OTU 1 seq prokMSA_id:054022 AF400469 Primary endosymbiont of Bemisia tabaci clone UG25 2.28.3.11.1.3.025 OTU 1 seq prokMSA_id:054086 AF211152 Carsonella ruddii natural-host Trioza urticae 23S and genes 2.28.3.11.1.3.026 OTU 1 seq prokMSA_id:054185 AF211134 Carsonella ruddii natural-host Ctenarytaina longicauda ; 23S and 5S genes complete ; transaldolase tal and alkyl hydroperoxide reductase small subunit ahpC genes complete cds; and valyl-tRNA synthetase valS cds 2.28.3.11.1.3.028 OTU 7 seqs prokMSA_id:008120 AB013086 unnamed organism. prokMSA_id:054015 AF211129 Carsonella ruddii natural-host Cacopsylla myrthi 23S and genes prokMSA_id:054310 AF211130 Carsonella ruddii natural-host Cacopsylla peregrina 23S and genes prokMSA_id:054587 AF211131 Carsonella ruddii natural-host Cacopsylla pyri 23S and genes prokMSA_id:054683 AF211149 Carsonella ruddii natural-host Spanioneura fonscolombii 23S and genes prokMSA_id:074516 AF243138 Carsonella ruddii endosymbiont of Cacopsylla brunneipennis and 23S genes prokMSA_id:029114 AF286118 Primary endosymbiont of Psylla pyricola 2.28.3.11.1.3.029 OTU 1 seq prokMSA_id:054414 AF211140 Carsonella ruddii natural-host Neotriozella hirsuta 23S and genes 2.28.3.11.1.3.030 OTU 1 seq prokMSA_id:054499 AF280097 Carsonella ruddii and 23S genes 2.28.3.11.1.3.031 OTU 1 seq prokMSA_id:054580 AF211146 Carsonella ruddii natural-host Psylla buxi 23S and genes 2.28.3.11.1.3.032 OTU 2 seqs prokMSA_id:054585 AF211123 Carsonella ruddii country Chile 23S and genes prokMSA_id:068912 AF211124 Carsonella ruddii country USA tryptophanyl-tRNA synthetase trpS cds; 23S and 5S genes complete ; transaldolase tal and alkyl hydroperoxide reductase small subunit ahpC genes complete cds; and valyl-tRNA synthetase valS cds 2.28.3.11.1.3.033 OTU 1 seq prokMSA_id:054848 AF211145 Carsonella ruddii natural-host Panisopelma sp. 23S and genes 2.28.3.11.1.3.034 OTU 1 seq prokMSA_id:054984 AF211139 Carsonella ruddii natural-host Heteropsylla texana 23S and genes 2.28.3.11.1.3.035 OTU 1 seq prokMSA_id:068911 AF211126 Carsonella ruddii natural-host cockerelli tryptophanyl-tRNA synthetase trpS cds; complete ; and 23S 2.28.3.11.1.3.999 poor quality 15 seqs prokMSA_id:008117 AF077604 unnamed organism. prokMSA_id:008118 AF077605 unnamed organism. prokMSA_id:008119 AF077606 unnamed organism. prokMSA_id:054966 AF211125 Carsonella ruddii natural-host Aphalaroida inermis 23S and genes prokMSA_id:053205 AF211127 Carsonella ruddii natural-host Blastopsylla occidentalis 23S and genes prokMSA_id:068910 AF211132 Carsonella ruddii natural-host Calophya schini tryptophanyl-tRNA synthetase trpS cds; complete ; and 23S prokMSA_id:068909 AF211138 Carsonella ruddii natural-host Heteropsylla cubana tryptophanyl-tRNA synthetase trpS cds; complete ; and 23S prokMSA_id:068908 AF211141 Carsonella ruddii natural-host Pachypsylla celtidis tryptophanyl-tRNA synthetase trpS cds; 23S and 5S genes complete ; transaldolase tal and alkyl hydroperoxide reductase small subunit ahpC genes complete cds; and valyl-tRNA synthetase valS cds prokMSA_id:054327 AF211142 Carsonella ruddii natural-host Pachypsylla pallida 23S and genes prokMSA_id:068907 AF211151 Carsonella ruddii natural-host Trioza eugeniae tryptophanyl-tRNA synthetase trpS cds; complete ; and 23S prokMSA_id:044835 AF286116 Primary endosymbiont of Heteropsylla cubana prokMSA_id:029633 AF286121 Primary endosymbiont of the inquiline Pachypsylla sp. prokMSA_id:036569 AF286122 Primary endosymbiont of Pachypsylla celtidismamma prokMSA_id:062833 AF526532 gamma clone MB10gamma-k5 prokMSA_id:008122 Z11927 symbiont of Siphoninus phillyreae ash whitefly. 2.28.3.11.1.4 HLM.MARINA_SUBGROUP 9 seqs 2.28.3.11.1.4.001 OTU 1 seq prokMSA_id:079928 AB094893 clone:OHKB7.28 2.28.3.11.1.4.002 OTU 1 seq prokMSA_id:080878 AB094935 clone:OHKB11.1 2.28.3.11.1.4.999 poor quality 7 seqs prokMSA_id:034861 AJ414126 Halomonas sp. MYS2-06 strain MYS2-06 prokMSA_id:087185 AJ561135 gamma clone ANT-RB 89 prokMSA_id:087084 AJ561181 Gamma GA-10 isolate GA-10 prokMSA_id:087841 AJ561185 Gamma GA-16 isolate GA-16 prokMSA_id:087125 AJ561188 Gamma GA-30 isolate GA-30 prokMSA_id:008124 D11177 Halomonas marina IAM 12928. prokMSA_id:008123 M93354 Halomonas marina str. 219 DSM 4741 . 2.28.3.11.1.5 CH.MARISMORTUI_SUBGROUP 22 seqs 2.28.3.11.1.5.001 OTU 9 seqs prokMSA_id:052988 AB042503 Halophilic TAG C11 prokMSA_id:043545 AF211862 Chromohalobacter israelensis prokMSA_id:037191 AJ295144 Chromohalobacter israelensis strain ATCC 43985 T prokMSA_id:048786 AJ295146 Halomonas elongata strain DSM 3043 prokMSA_id:035612 AJ295147 Halomonas elongata strain ATCC 33174 prokMSA_id:008129 U78719 Chromohalobacter marismortui str. T1093. prokMSA_id:008130 X87220 Chromohalobacter marismortui str. A-65. prokMSA_id:008127 X87221 Chromohalobacter marismortui str. A-100. prokMSA_id:008128 X87222 Chromohalobacter marismortui str. A-492. 2.28.3.11.1.5.002 OTU 4 seqs prokMSA_id:008126 AB021386 Pseudomonas beijerinckii ATCC 19372. prokMSA_id:043878 AF211861 Chromohalobacter canadensis prokMSA_id:046277 AJ295143 Chromohalobacter canadensis strain ATCC 43984 T prokMSA_id:094374 AY373448 Chromohalobacter sarecii 2.28.3.11.1.5.003 OTU 1 seq prokMSA_id:008125 X87219 Chromohalobacter marismortui ATCC 17056 . 2.28.3.11.1.5.004 OTU 4 seqs prokMSA_id:033515 AJ276807 Halomonas muralis strain LMG-19418 prokMSA_id:070784 AJ320530 Halomonas muralis strain LMG 20969 T prokMSA_id:036749 AJ320531 Halomonas muralis specimen voucher LMG 20970 prokMSA_id:042533 AJ320532 Halomonas muralis specimen voucher LMG 20971 2.28.3.11.1.5.005 OTU 1 seq prokMSA_id:045184 AF417910 antarctic soil clone bh4.45 2.28.3.11.1.5.999 poor quality 3 seqs prokMSA_id:016843 AF114635 gamma SUR-FREE-40 prokMSA_id:027659 AJ277205 Chromohalobacter nigriandinum isolate 4N prokMSA_id:043094 AJ427627 Salinomonas halophila strain CG 2.1 2.28.3.11.1.6 HLM.DESIDERATA_SUBGROUP 50 seqs 2.28.3.11.1.6.001 OTU 1 seq prokMSA_id:008136 X93493 Halomonas pantelleriensis str. AAP DSM 9661 . 2.28.3.11.1.6.003 OTU 1 seq prokMSA_id:008134 AF140007 Halomonas ML-185 str. ML-185. 2.28.3.11.1.6.004 OTU 1 seq prokMSA_id:008133 AF054286 Halomonas campusalis. 2.28.3.11.1.6.009 OTU 2 seqs prokMSA_id:038608 AF251143 Halomonas marisflava prokMSA_id:060375 AF513464 Halomonadaceae PH17 2.28.3.11.1.6.014 OTU 3 seqs prokMSA_id:042889 X92144 sp. Lake Nakuru isolate 28N1 prokMSA_id:022591 X92146 sp. Crater Lake isolate 75C4 prokMSA_id:044380 X92147 sp. Lake Elmenteita isolate 35E2 2.28.3.11.1.6.016 OTU 7 seqs prokMSA_id:042178 AF275699 Hailaer soda lake F16 prokMSA_id:025198 AF424168 Halomonas sp. MERTZ_0CM_180 prokMSA_id:026569 AJ302088 Halomonas sp. IB-I6 strain IB-I6 prokMSA_id:052591 AJ309564 Halomonas nitritophilus strain IB-Ar4 prokMSA_id:046054 E15669 Deleya sp. ASE1315 prokMSA_id:049544 X92143 sp. Lake Elmenteita isolate 44E3 prokMSA_id:008131 X92417 Halomonas desiderata str. FB2 DSM 9502 . 2.28.3.11.1.6.017 OTU 8 seqs prokMSA_id:008132 AB025599 Halomonas MBIC2031 str. MBIC2031. prokMSA_id:069979 AB055789 Pseudomonas sp. Fsur-1 prokMSA_id:080320 AB094920 clone:OHKB9.29 prokMSA_id:067589 AF493973 Halomonas sp. 9313c3 prokMSA_id:042325 AJ427626 Chromohalobacter salinarum strain CG 4.1 prokMSA_id:082029 AY196981 Halomonas sp. 3012dK prokMSA_id:091766 AY345366 L9 prokMSA_id:008135 U78786 Haererehalobacter ostenderis. 2.28.3.11.1.6.019 OTU 1 seq prokMSA_id:082752 AY226226 Halomonas sp. clone ABBB-82 2.28.3.11.1.6.021 OTU 4 seqs prokMSA_id:093560 AJ551114 Halomonas sp. wp39 isolate wp39 prokMSA_id:093868 AJ551120 Halomonas sp. mp6 isolate mp6 prokMSA_id:080433 AY188938 Marine P_wp0224 prokMSA_id:092002 AY349462 Halomonas sp. WHOI JT-29 2.28.3.11.1.6.999 poor quality 22 seqs prokMSA_id:026577 AB003442 prokMSA_id:020178 AF025563 Gamma MED20 prokMSA_id:047603 AF106600 Halomonas desiderata prokMSA_id:028728 AF143769 gamma clone K13 prokMSA_id:041504 AF288718 Halomonas sp. HD-2000/10 prokMSA_id:071607 AJ400522 clone Hb1-K66 prokMSA_id:019335 AJ400531 clone Hb1-K6 prokMSA_id:032815 AJ400542 clone Hb3-K22 prokMSA_id:074024 AJ400546 clone Hb3-K30 prokMSA_id:037238 AJ400550 artial clone Hb3-K9 prokMSA_id:042724 AJ400558 clone Hb6-K3 prokMSA_id:031481 AJ400559 clone Hb6-K4 prokMSA_id:028778 AJ416654 gamma clone env.S034 prokMSA_id:031128 AJ416656 gamma clone env.S031 prokMSA_id:025798 AJ416657 gamma clone env.S076 prokMSA_id:036898 AJ416658 gamma clone env.S073 prokMSA_id:051653 AJ416677 gamma clone env.S114 prokMSA_id:063889 AJ493388 clone m7-1 prokMSA_id:057399 AJ517885 clone mHK36.2 prokMSA_id:075376 AY162937 clone ZB-Z1 prokMSA_id:028689 U64000 Chromohalobacter sp. prokMSA_id:034303 X92145 sp. Lake Bogoria isolate WB4 2.28.3.11.1.7 HLM.SUBGLACIESCOLA_SUBGROUP 186 seqs 2.28.3.11.1.7.003 OTU 1 seq prokMSA_id:008146 AF170753 Halomonas QSSC9-11 str. QSSC9-11. 2.28.3.11.1.7.006 OTU 2 seqs prokMSA_id:008139 AF142904 Halomonas ORGANIC-2. prokMSA_id:038116 AJ306892 Halomonas subglaciescola strain DSM 4683 2.28.3.11.1.7.013 OTU 1 seq prokMSA_id:024119 AF139993 Halomonas sp. ML-027 2.28.3.11.1.7.014 OTU 1 seq prokMSA_id:034220 AB024933 Halomonas sp. UT103 2.28.3.11.1.7.015 OTU 1 seq prokMSA_id:043505 AB049746 Halomonas sp. Loihi-Chm-6 2.28.3.11.1.7.016 OTU 1 seq prokMSA_id:044057 AB049745 Halomonas sp. Loihi-Chm-5 2.28.3.11.1.7.017 OTU 123 seqs prokMSA_id:008151 AB010845 str. HTB143. prokMSA_id:008152 AB010846 str. HTB069. prokMSA_id:008156 AB010847 str. HTB138. prokMSA_id:008153 AB010866 str. HTB123. prokMSA_id:008157 AB010867 str. HTB122. prokMSA_id:008154 AB010870 str. HTB111. prokMSA_id:030146 AB016049 Halomonas sp. NIBH P1H8 prokMSA_id:042563 AB016050 Halomonas sp. NIBH P1H13 prokMSA_id:044149 AB016051 Halomonas sp. NIBH P1H14 prokMSA_id:054333 AB016052 Halomonas sp. NIBH P1H22 prokMSA_id:042780 AB016053 Halomonas sp. NIBH P1H25 prokMSA_id:008150 AB022662 Halomonas MBIC1142 str. MBIC1142. prokMSA_id:017793 AB042501 Halomonas sp. TAG C4 prokMSA_id:070966 AB055787 Halomonas sp. Dsur-1 prokMSA_id:067737 AB062148 clone:pBSB1.28 prokMSA_id:067717 AB062165 clone:pBSB5.31 prokMSA_id:058510 AB072715 clone:pHAuB-Q27 prokMSA_id:061014 AB085649 Halomonas sp. TNB I20 prokMSA_id:061013 AB085650 Halomonas sp. TNB I24 prokMSA_id:061012 AB085651 Halomonas sp. TNB I26 prokMSA_id:061011 AB085653 Halomonas sp. SYO J42 prokMSA_id:061010 AB085654 Halomonas sp. SMT L4 prokMSA_id:061009 AB085655 Halomonas sp. SMT L20 prokMSA_id:061008 AB085656 Halomonas sp. ARD M34 prokMSA_id:061007 AB085657 Halomonas sp. ARD M36 prokMSA_id:061006 AB085658 Halomonas sp. NT N97 prokMSA_id:061005 AB085659 Halomonas sp. NT N100 prokMSA_id:061004 AB085660 Halomonas sp. SYM P12 prokMSA_id:078680 AB094459 Halomonas sp. DSM.25.14 prokMSA_id:081003 AB094887 clone:OHKB7.20 prokMSA_id:080060 AB094939 clone:OHKB11.25 prokMSA_id:079644 AB094944 clone:OHKB13.1 prokMSA_id:080040 AB094947 clone:OHKB13.16 prokMSA_id:008147 AF139994 Halomonas ML-028 str. ML-028. prokMSA_id:071016 AF173968 Halomonas variabilis prokMSA_id:008149 AF199439 Halomonas aquamarina str. DS40M3. prokMSA_id:025345 AF212201 Halomonas sp. Eplume2.B1 complete prokMSA_id:040996 AF212202 Halomonas sp. Eplume1.A1 complete prokMSA_id:035278 AF212203 Halomonas sp. Eplume3.D3 complete prokMSA_id:019338 AF212204 Halomonas sp. Esulfide1.N2P complete prokMSA_id:018077 AF212206 Halomonas sp. Althf1.1723a complete prokMSA_id:035815 AF212212 Halomonas sp. Ssw1.1818c complete prokMSA_id:024039 AF212214 Halomonas sp. Sbplume1.1840c complete prokMSA_id:023983 AF212216 Halomonas sp. Splume4.1864c complete prokMSA_id:042510 AF212217 Halomonas sp. Slthf1.1874b complete prokMSA_id:036640 AF212218 Halomonas sp. Slthf2.1878c complete prokMSA_id:071487 AF220314 O11F7 prokMSA_id:037779 AF220321 O14D3 prokMSA_id:033775 AF254112 Slope strain DII1a prokMSA_id:029767 AF277477 Halomonas SIC.42334 prokMSA_id:047600 AF348725 Gamma MPD-51 prokMSA_id:045509 AF348726 Gamma MPD-53 prokMSA_id:052456 AF348728 Gamma MPD-61 prokMSA_id:027721 AF348733 Gamma MPD-72 prokMSA_id:055763 AF361649 clone MN16BT2-7 prokMSA_id:052762 AF371860 clone p-860-a5 prokMSA_id:085461 AF539762 Halomonas sp. E21 prokMSA_id:084290 AF539763 Halomonas sp. E23 prokMSA_id:086698 AF539764 Halomonas sp. R21 prokMSA_id:076753 AF550585 Halomonas sp. Ko501 prokMSA_id:076319 AF550586 Halomonas sp. Ko502 prokMSA_id:071069 AJ244730 Halomonas sp. V4.MS.05 prokMSA_id:022626 AJ293821 Arctic seawater R7079 prokMSA_id:031671 AJ293828 Arctic seawater R7103 prokMSA_id:075638 AJ294338 Halomonas variabilis isolate HY-51g prokMSA_id:075806 AJ294343 Halomonas sp. HY-51m isolate HY-51m prokMSA_id:075482 AJ294344 Halomonas sp. HY-23g isolate HY-23g prokMSA_id:076518 AJ294345 Halomonas sp. HY-23k isolate HY-23k prokMSA_id:075357 AJ294346 Halomonas sp. HY-B2 isolate HY-B2 prokMSA_id:075036 AJ294347 Halomonas variabilis isolate HY-B3 prokMSA_id:075905 AJ294348 Halomonas variabilis isolate HY-61 prokMSA_id:075016 AJ297766 Halomonas sp. HY-101 isolate HY-101 prokMSA_id:019859 AJ306888 Halomonas aquamarina strain DSM 30161 prokMSA_id:030624 AJ306891 Halomonas meridiana strain DSM 5425 prokMSA_id:033823 AJ306893 Halomonas variabilis strain DSM 3051 prokMSA_id:040862 AJ306894 Halomonas venusta strain DSM 4743 prokMSA_id:081790 AJ431369 Halomonas frigidi strain DD 39 prokMSA_id:093886 AJ551092 Halomonas sp. wp5 isolate wp5 prokMSA_id:093857 AJ551099 Halomonas sp. wp19 isolate wp19 prokMSA_id:094177 AJ551117 Halomonas sp. mp3 isolate mp3 prokMSA_id:094069 AJ551118 Halomonas sp. mp4 isolate mp4 prokMSA_id:093294 AJ551123 Halomonas sp. mp13 isolate mp13 prokMSA_id:093251 AJ551124 Halomonas sp. mp15 isolate mp15 prokMSA_id:093201 AJ551126 Halomonas sp. es4 isolate es4 prokMSA_id:093527 AJ551130 Halomonas sp. es11 isolate es11 prokMSA_id:093575 AJ551131 Halomonas sp. es12 isolate es12 prokMSA_id:094018 AJ551133 Halomonas sp. ws16 isolate ws16 prokMSA_id:093675 AJ551134 Halomonas sp. ws21 isolate ws21 prokMSA_id:094235 AJ551135 Halomonas sp. ws24 isolate ws24 prokMSA_id:094170 AJ551136 Halomonas sp. ws25 isolate ws25 prokMSA_id:093799 AJ551137 Halomonas sp. ws26 isolate ws26 prokMSA_id:093477 AJ551138 Halomonas sp. ws27 isolate ws27 prokMSA_id:093861 AJ551139 Halomonas sp. ws28 isolate ws28 prokMSA_id:093764 AJ551140 Halomonas sp. ws30 isolate ws30 prokMSA_id:094140 AJ551141 Halomonas sp. ws31 isolate ws31 prokMSA_id:083942 AJ557838 Marine arctic deep-sea FF8a prokMSA_id:084649 AJ557848 Marine arctic deep-sea HF13 prokMSA_id:084393 AJ557860 Marine arctic deep-sea FB8 prokMSA_id:090384 AJ567547 Halomonas sp. clone MBMPE31 prokMSA_id:090644 AJ567550 Halomonas sp. clone MBMPE36 prokMSA_id:089427 AJ567567 Halomonas sp. clone MBMPE62 prokMSA_id:090755 AJ567584 Halomonas sp. clone MBAE25 prokMSA_id:022745 AY062217 Halomonas sp. BYS-1 prokMSA_id:082406 AY167278 Halomonas sp. ANT9086 prokMSA_id:082157 AY167282 Halomonas variabilis strain ANT9112 prokMSA_id:078781 AY179189 Halomonas magadiensis clone ALK-12p prokMSA_id:079077 AY179192 Halomonas magadiensis clone H2 prokMSA_id:080894 AY189682 Halomonas sp. P_wp0221 prokMSA_id:081690 AY204638 Halomonas variabilis strain HTG7 prokMSA_id:081375 AY214346 Halomonas sp. A_wp02222 prokMSA_id:082388 AY245449 Halomonas boliviensis strain LC1 prokMSA_id:081833 AY245450 Halomonas boliviensis strain LC2 prokMSA_id:091651 AY345379 JB3 prokMSA_id:094674 AY372116 L13 prokMSA_id:096155 AY383044 Halomonas sp. DY8-1 prokMSA_id:098627 AY394869 Halomonas sp. EPR 11 prokMSA_id:008143 U85871 Halomonas variabilis str. SW04. prokMSA_id:008144 U85872 Halomonas variabilis str. SW32. prokMSA_id:008145 U85873 Halomonas variabilis str. SW48. prokMSA_id:035481 X92149 sp. Lake Nakuru isolate 19N1 prokMSA_id:051148 X92150 sp. Lake Magadi isolate 21M1 prokMSA_id:051042 X92151 sp. Lake Bogoria isolate 24B1 prokMSA_id:051175 Y15340 Halovibrio sp. isolate PRLIST03 2.28.3.11.1.7.018 OTU 1 seq prokMSA_id:063144 AY121436 Halomonas sp. YIM-kkny11 2.28.3.11.1.7.019 OTU 1 seq prokMSA_id:064132 AF477891 'A1-UMH 8% pond' 2.28.3.11.1.7.020 OTU 3 seqs prokMSA_id:066322 AF506997 Br-50 prokMSA_id:075140 AY162938 clone ZB-Z12 prokMSA_id:076090 AY162939 clone ZB-Z71 2.28.3.11.1.7.021 OTU 1 seq prokMSA_id:068317 AF361650 clone MN16BT2-8 2.28.3.11.1.7.022 OTU 1 seq prokMSA_id:075288 AY162935 clone ZB-Z83 2.28.3.11.1.7.023 OTU 1 seq prokMSA_id:079151 AF505744 Gamma UMB18C 2.28.3.11.1.7.024 OTU 1 seq prokMSA_id:079643 AB094856 clone:OHKB4.77 2.28.3.11.1.7.025 OTU 1 seq prokMSA_id:079874 AB094914 clone:OHKB7.90 2.28.3.11.1.7.026 OTU 1 seq prokMSA_id:079879 AB094934 clone:OHKB9.88 2.28.3.11.1.7.027 OTU 1 seq prokMSA_id:079996 AB094946 clone:OHKB13.11 2.28.3.11.1.7.028 OTU 1 seq prokMSA_id:080152 AB094936 clone:OHKb11.17 2.28.3.11.1.7.029 OTU 1 seq prokMSA_id:080403 AB094941 clone:OHKb11.56 2.28.3.11.1.7.030 OTU 1 seq prokMSA_id:080423 AB094951 clone:OHKB13.54 2.28.3.11.1.7.031 OTU 1 seq prokMSA_id:080556 AB094913 clone:OHKB7.87 2.28.3.11.1.7.032 OTU 1 seq prokMSA_id:080872 AB094915 clone:OHKB7.95 2.28.3.11.1.7.033 OTU 1 seq prokMSA_id:089659 AJ567579 Halomonas sp. clone MBAE18 2.28.3.11.1.7.999 poor quality 38 seqs prokMSA_id:047326 AB042500 Halomonas sp. TAG C2 prokMSA_id:024820 AB042511 methane-seep sediment SB-4 prokMSA_id:019598 AF025958 Halomonas variabilis prokMSA_id:028238 AF212215 Halomonas sp. Ssw2.1856c prokMSA_id:034216 AF288716 Halomonas sp. HD-2000/8 prokMSA_id:043870 AF321059 Halomonas aquamarina strain U41 prokMSA_id:070543 AF321070 clone A1 prokMSA_id:068315 AF361651 clone MN16BT2-9 prokMSA_id:068309 AF361660 clone MN16BT2-23 prokMSA_id:068306 AF361661 clone MN12BT3-26 prokMSA_id:068302 AF361666 clone MN12BT3-33 prokMSA_id:068299 AF361669 clone MN12BT3-38 prokMSA_id:068298 AF361672 clone MN12BT3-44 prokMSA_id:068292 AF361677 clone MN13BT4-54 prokMSA_id:037129 AF432282 gamma FO-6d-51 prokMSA_id:031254 AF432317 gamma 0%N-26d-47 prokMSA_id:025194 AF474002 gamma LR-54 prokMSA_id:064139 AF477879 clone 48-UMH 22% pond prokMSA_id:064123 AF477903 'A327-UMH 31% pond' prokMSA_id:066970 AF503862 Halomonas sp. 'Belize Reef cbno3r1' prokMSA_id:058563 AF544058 gamma isolate DGGE gel band M7-2 prokMSA_id:061961 AJ244729 Halomonas sp. V4.MS.22 prokMSA_id:071450 AJ293827 Arctic seawater R7102 prokMSA_id:071534 AJ311970 gamma strain OS-1488 prokMSA_id:064930 AY095808 gamma CS4K-206 prokMSA_id:078947 AY179191 Halomonas magadiensis clone H1 prokMSA_id:079138 AY183462 Halomonas sp. AED2 prokMSA_id:079190 AY183463 Halomonas sp. AED3 prokMSA_id:079450 AY183466 Halomonas sp. AEP3 prokMSA_id:087181 AY274233 gamma isolate DGGE band GWS-FL-7 prokMSA_id:097498 AY394874 Halomonas sp. EPR 16 prokMSA_id:008137 L42614 Halomonas subglaciescola ACAM 21. prokMSA_id:008141 L42618 Halomonas venusta ACAM 346 . prokMSA_id:008138 L42619 Halomonas halodurans DSM 5160 . prokMSA_id:008155 M93352 Halomonas aquamarina DSM 30161 . prokMSA_id:008148 M93356 Halomonas meridiana ACAM 246 . prokMSA_id:008142 M93357 Halomonas variabilis DSM 3051 . prokMSA_id:008140 M93358 Halomonas subglaciescola ACAM 12 . 2.28.3.11.1.8 HLM.ELONGATA_SUBGROUP 79 seqs 2.28.3.11.1.8.002 OTU 1 seq prokMSA_id:008170 L04942 Halomonas halodenitrificans ATCC 13511 . 2.28.3.11.1.8.005 OTU 4 seqs prokMSA_id:052868 AF301407 Halomonas salina prokMSA_id:008165 AJ243447 Halomonas salina ATCC 49509 . prokMSA_id:008166 AJ243448 Halomonas salina DSM 5928. prokMSA_id:025638 AJ295145 Halomonas salina strain F8-11 T 2.28.3.11.1.8.012 OTU 8 seqs prokMSA_id:034862 AF212205 Halomonas sp. Msw1.1556b complete prokMSA_id:031691 AF316143 Halomonas sp. KMM 3550 prokMSA_id:022868 AJ306890 Halomonas marina strain DSM 4741 prokMSA_id:094081 AJ551106 Halomonas sp. wp29 isolate wp29 prokMSA_id:093962 AJ551108 Halomonas sp. wp31 isolate wp31 prokMSA_id:094104 AJ551111 Halomonas sp. wp34 isolate wp34 prokMSA_id:093482 AJ551113 Halomonas sp. wp38 isolate wp38 prokMSA_id:093721 AJ551115 Halomonas sp. mp1 isolate mp1 2.28.3.11.1.8.013 OTU 4 seqs prokMSA_id:042664 X92136 sp. Lake Bogoria isolate WB5 prokMSA_id:046225 X92138 sp. Lake Bogoria isolate 8B1 prokMSA_id:029327 X92139 sp. Lake Bogoria isolate 25B1 prokMSA_id:023570 X92141 sp. Lake Bogoria isolate WB2 2.28.3.11.1.8.014 OTU 1 seq prokMSA_id:026353 AJ306889 Halomonas halmophila strain ATCC 19717 2.28.3.11.1.8.015 OTU 1 seq prokMSA_id:033427 X92142 sp. Lake Bogoria isolate 65B4 2.28.3.11.1.8.018 OTU 1 seq prokMSA_id:039499 AF447179 antarctic soil clone bh3.31 2.28.3.11.1.8.021 OTU 1 seq prokMSA_id:043696 X92137 sp. Lake Magadi isolate 27M1 2.28.3.11.1.8.022 OTU 1 seq prokMSA_id:045151 AF348720 gamma clone MPD-43 2.28.3.11.1.8.023 OTU 1 seq prokMSA_id:047371 AJ417388 Halomonas halocynthiae strain KMM 1376 2.28.3.11.1.8.024 OTU 1 seq prokMSA_id:049283 AF364942 clone clH31 2.28.3.11.1.8.026 OTU 23 seqs prokMSA_id:067708 AB069958 Halomonas sp. SK1 prokMSA_id:028015 AF211860 Halomonas alimentaria prokMSA_id:042553 AF275709 Hailaer soda lake F8 prokMSA_id:022659 AF280796 Halomonas sp. EF43 prokMSA_id:021607 AF348721 gamma clone MPD-47 prokMSA_id:060386 AF513453 Halomonadaceae LA44 prokMSA_id:025255 AJ133761 Halomonas sp. isolate CO12 prokMSA_id:049824 AJ309560 Halomonas sp. IB-559 prokMSA_id:087703 AJ488178 Halomonas sp. 12g prokMSA_id:036784 AY035894 Halomonas cupida prokMSA_id:063473 AY121978 Halomonas elongata prokMSA_id:082347 AY205298 Halomonas sp. CR1-4 prokMSA_id:084065 AY268080 Halomonas ventosae prokMSA_id:087304 AY282468 Marine ps-16 prokMSA_id:091936 AY332559 Halomonas sp. EF11 prokMSA_id:092027 AY347310 Halomonas sp. A-07 prokMSA_id:091014 AY349461 Halomonas sp. WHOI JT-27 prokMSA_id:008167 L42616 Halomonas pacifica ACAM 345 . prokMSA_id:008158 X67023 Halomonas elongata ATCC 33173 . prokMSA_id:008171 X87217 Halomonas salina ATCC 49509 . prokMSA_id:008160 X87218 Halomonas eurihalina str. F9-6 ATCC 49336 . prokMSA_id:052855 X92135 sp. Crater Lake isolate 12C1 prokMSA_id:053048 X92140 sp. Lake Elmenteita isolate WE5 2.28.3.11.1.8.027 OTU 1 seq prokMSA_id:073550 AF220308 O11D12 2.28.3.11.1.8.028 OTU 1 seq prokMSA_id:079723 AB094888 clone:OHKB7.22 2.28.3.11.1.8.029 OTU 1 seq prokMSA_id:082927 AJ495618 gamma isolate SA-18 2.28.3.11.1.8.030 OTU 2 seqs prokMSA_id:088713 AJ567578 Alcanivorax sp. clone MBAE17 prokMSA_id:089535 AJ567597 Alcanivorax sp. clone MBAE47 2.28.3.11.1.8.031 OTU 1 seq prokMSA_id:090107 AY327169 clone ZB104 2.28.3.11.1.8.032 OTU 1 seq prokMSA_id:095058 AY382579 Halomonas salicampi 2.28.3.11.1.8.999 poor quality 25 seqs prokMSA_id:068933 AF417879 antarctic soil clone bh1.56 prokMSA_id:064140 AF477876 clone 40-UMH 22% pond prokMSA_id:056035 AF477901 'A207-UMH 22% pond' prokMSA_id:064125 AF477902 'A310-UMH 31% pond' prokMSA_id:048370 AJ271864 Halomonas maura strain S-31 prokMSA_id:045669 AJ416684 Halomonas sp. SMA1 strain str.SMA1 prokMSA_id:059220 AJ458192 Acinetobacter sp. 1sq72 prokMSA_id:059216 AJ458195 Halomonas sp. 2Asq71 prokMSA_id:059217 AJ458196 Halomonas sp. 2sq453 strain 2sq453 prokMSA_id:059215 AJ458197 Halomonas sp. 2sq55 prokMSA_id:086979 AJ561162 gamma clone RB_OIL 222 prokMSA_id:087521 AJ561183 Gamma GA-13 isolate GA-13 prokMSA_id:061422 AY043815 gamma clone NMS8.54WL prokMSA_id:065070 AY095743 gamma NL-142F prokMSA_id:065041 AY095779 gamma HI-33 prokMSA_id:056489 AY095790 gamma HI-47 prokMSA_id:097527 AY394647 gamma clone N9-2 prokMSA_id:008172 L42615 Halomonas cupida ACAM 343 . prokMSA_id:008164 L42617 Halomonas salina ATCC 49509 . prokMSA_id:008161 L42620 Halomonas eurihalina str. F9-6 ACAM 353 . prokMSA_id:008162 M59153 Halomonas halmophila ATCC 19717 . prokMSA_id:008163 M93353 Halomonas halophila str. F5-7 DSM 4770 . prokMSA_id:008159 M93355 Halomonas elongata ATCC 33173 . prokMSA_id:008169 U22836 str. I-18. prokMSA_id:008168 U43638 clone EH-18. 2.28.3.11.2 OSP.MARIS_SUBGROUP 176 seqs 2.28.3.11.2.001 OTU 1 seq prokMSA_id:008189 M22365 Oceanospirillum linum ATCC 11336 . 2.28.3.11.2.002 OTU 3 seqs prokMSA_id:008186 AB006760 Oceanospirillum beijerinckii subsp. beijerinckii IFO 15445. prokMSA_id:008184 AB006761 Oceanospirillum beijerinckii subsp. pelagicum str. SWC UF1 IFO prokMSA_id:008187 NONE Oceanospirillum beijerinckii subsp. beijerinckii ATCC 12754 . 2.28.3.11.2.003 OTU 4 seqs prokMSA_id:008180 AB006762 Oceanospirillum maris subsp. hiroshimense IFO 13616. prokMSA_id:008178 AB006763 Oceanospirillum maris subsp. williamsae str. 2b IFO 15468 . prokMSA_id:008183 AB006771 Oceanospirillum maris subsp. maris str. Jannasch 10 ATCC 27509 . prokMSA_id:008182 NONE Oceanospirillum maris subsp. maris ATCC 27649. 2.28.3.11.2.004 OTU 1 seq prokMSA_id:008181 AB015519 str. BD1-7. 2.28.3.11.2.005 OTU 1 seq prokMSA_id:008179 AF159674 clone HstpL43. 2.28.3.11.2.006 OTU 11 seqs prokMSA_id:008177 AF001650 clone OCS44. prokMSA_id:018789 AF245642 gamma NAC11-19 prokMSA_id:060645 AF406528 gamma clone AEGEAN_146 prokMSA_id:072166 AF406534 gamma clone AEGEAN_209 prokMSA_id:021417 AY033304 gamma MB11E02 prokMSA_id:054972 AY033311 gamma MB11G09 and 23S genes prokMSA_id:054612 AY033314 gamma MB12D03 ; and 23S complete prokMSA_id:055020 AY033317 gamma MB12G11 and 23S genes prokMSA_id:054824 AY033326 gamma MB11B08 and 23S genes prokMSA_id:092279 AY354844 gamma clone PLY-P1-108 prokMSA_id:018452 Z88589 isolate HRV33 2.28.3.11.2.007 OTU 1 seq prokMSA_id:008176 AB006764 Oceanospirillum multiglobuliferum IFO 13614 . 2.28.3.11.2.008 OTU 1 seq prokMSA_id:021557 AB054137 HOC3 2.28.3.11.2.009 OTU 1 seq prokMSA_id:022651 AF245636 gamma NAC11-11 2.28.3.11.2.010 OTU 1 seq prokMSA_id:059151 AY136116 Oceanospirillum sp. MED92 2.28.3.11.2.011 OTU 2 seqs prokMSA_id:059147 AY136120 Marinobacter sp. MED104 prokMSA_id:091473 AY345370 L15 2.28.3.11.2.012 OTU 1 seq prokMSA_id:025850 AF333535 gamma clone R33 2.28.3.11.2.013 OTU 1 seq prokMSA_id:026630 AY007676 Unknown marine gamma NOR5 2.28.3.11.2.014 OTU 1 seq prokMSA_id:029312 AF434976 sponge symbiont JAWS20 2.28.3.11.2.015 OTU 1 seq prokMSA_id:031816 U84019 marine 2.28.3.11.2.016 OTU 1 seq prokMSA_id:032548 AF142836 BURTON-16 2.28.3.11.2.017 OTU 1 seq prokMSA_id:033570 AF424111 gamma MERTZ_2CM_259 2.28.3.11.2.018 OTU 1 seq prokMSA_id:037312 AF424141 gamma MERTZ_0CM_134 2.28.3.11.2.019 OTU 8 seqs prokMSA_id:095512 AB107975 Microbulbifer sp. JAMB-A7 prokMSA_id:066016 AF378116 Microbulbifer sp. GK/2001 prokMSA_id:051065 AF479688 Microbulbifer salipaludis strain SM-1 prokMSA_id:062745 AF479844 Pseudomonas agarolyticus AS112 prokMSA_id:062744 AF479845 Pseudomonas agarolyticus 8A prokMSA_id:062743 AF479846 Pseudomonas agarolyticus DB2/D1 prokMSA_id:055775 AF500006 Pseudomonas elongata strain DSM 6810 prokMSA_id:085971 AF500209 Pseudomonas sp. CJ11075 2.28.3.11.2.020 OTU 1 seq prokMSA_id:041981 AH005108 marine 5' 2.28.3.11.2.021 OTU 1 seq prokMSA_id:069355 AJ510266 Microbulbifer arenaceous strain RSBr-1T 2.28.3.11.2.022 OTU 1 seq prokMSA_id:043624 AF388904 gamma clone GOBB3-CL251 2.28.3.11.2.023 OTU 1 seq prokMSA_id:045957 AF235120 gamma KTc1119 2.28.3.11.2.024 OTU 1 seq prokMSA_id:048731 U84025 marine 2.28.3.11.2.025 OTU 1 seq prokMSA_id:050920 AF424105 gamma MERTZ_2CM_227 2.28.3.11.2.026 OTU 1 seq prokMSA_id:056837 AY149738 gamma SIMO CL-S30-66 2.28.3.11.2.027 OTU 1 seq prokMSA_id:059781 AY133414 clone BB2_169 2.28.3.11.2.028 OTU 1 seq prokMSA_id:060370 AF513467 Halomonadaceae PH27A 2.28.3.11.2.029 OTU 2 seqs prokMSA_id:060640 AF406532 gamma clone AEGEAN_204 prokMSA_id:060639 AF406535 gamma clone AEGEAN_242 2.28.3.11.2.030 OTU 3 seqs prokMSA_id:062465 AY102020 Gamma HTCC148 prokMSA_id:062462 AY102021 Gamma HTCC151 prokMSA_id:062455 AY102025 Gamma HTCC221 2.28.3.11.2.031 OTU 1 seq prokMSA_id:062613 AJ504506 isolate P1CN39 2.28.3.11.2.032 OTU 1 seq prokMSA_id:077799 AY172302 clone 18 2.28.3.11.2.033 OTU 1 seq prokMSA_id:079309 AF382112 clone ZA3235c 2.28.3.11.2.034 OTU 1 seq prokMSA_id:079413 AF382097 clone ZA2202c 2.28.3.11.2.035 OTU 3 seqs prokMSA_id:080311 AF468253 clone ARKDMS-13 prokMSA_id:079764 AF468308 clone ARKICE-72 prokMSA_id:081989 AY165586 Arctic sea ice clone ARKXVI/2-134 2.28.3.11.2.036 OTU 1 seq prokMSA_id:079955 AY193238 clone Bol19 2.28.3.11.2.037 OTU 1 seq prokMSA_id:080133 AF468317 clone ARKICE-77 2.28.3.11.2.038 OTU 1 seq prokMSA_id:080432 AB094930 clone:OHKB9.63 2.28.3.11.2.040 OTU 1 seq prokMSA_id:080851 AB094900 clone:OHKB7.46 2.28.3.11.2.041 OTU 1 seq prokMSA_id:081055 AY193973 clone SD4 2.28.3.11.2.042 OTU 1 seq prokMSA_id:081620 AY187527 clone SD91 2.28.3.11.2.044 OTU 2 seqs prokMSA_id:080534 AF468291 clone ARKIA-75 prokMSA_id:081830 AY165575 Antarctic sea ice clone ANTXI/4_14-16 2.28.3.11.2.045 OTU 1 seq prokMSA_id:083122 AF500211 Pseudomonas sp. CJ11064 2.28.3.11.2.046 OTU 1 seq prokMSA_id:083738 AF500206 Microbulbifer sp. CJ11049 2.28.3.11.2.047 OTU 1 seq prokMSA_id:087158 AJ315983 Saccharospirillum impatiens strain EL-105T 2.28.3.11.2.048 OTU 1 seq prokMSA_id:087543 AJ561121 Reinekia marinisedimenta strain DSM 15388T 2.28.3.11.2.049 OTU 1 seq prokMSA_id:088462 AY321406 clone M129 2.28.3.11.2.050 OTU 1 seq prokMSA_id:088744 AY321417 clone S35 2.28.3.11.2.051 OTU 1 seq prokMSA_id:091777 AY135663 clone ANT18/2_14 2.28.3.11.2.052 OTU 1 seq prokMSA_id:095349 AY386333 Marine gamma HTCC2143 2.28.3.11.2.053 OTU 1 seq prokMSA_id:098102 AY377986 Microbulbifer maritimus strain TF-17 2.28.3.11.2.054 OTU 1 seq prokMSA_id:098298 AY386345 Marine gamma HTCC2178 2.28.3.11.2.999 poor quality 95 seqs prokMSA_id:008185 AB021368 Pseudomonas elongata ATCC 10144. prokMSA_id:031596 AB031653 gamma TIHP368-55 prokMSA_id:035476 AF055821 Marine 'Sippewissett 2-32' prokMSA_id:022788 AF141439 gamma clone CRE-FL8 prokMSA_id:044002 AF195482 Pseudomonas kpj405f prokMSA_id:026790 AF245622 gamma NAC1-13 prokMSA_id:021539 AF245629 gamma NAC1-20 prokMSA_id:049833 AF245644 gamma NAC60-2 prokMSA_id:022274 AF260752 Oceanospirillum linum prokMSA_id:033367 AF289902 alpha Kmlps6-4 prokMSA_id:030279 AF332283 clone C12-38 prokMSA_id:068259 AF365457 clone PA1 prokMSA_id:067974 AF365793 clone BM89PA1BbF12 prokMSA_id:070471 AF365796 clone BM89PA1BbH1 prokMSA_id:067973 AF365798 clone BM89PA1BbH2 prokMSA_id:067968 AF365802 clone BM89PA4BbB10 prokMSA_id:067965 AF365804 clone BM89PA4BbH8 prokMSA_id:067964 AF365805 clone BM89PA4BC11 prokMSA_id:067966 AF365806 clone BM89PA4BC12 prokMSA_id:067963 AF365807 clone BM89PA4BC5 prokMSA_id:055275 AF365808 clone BM89PA4BE5 prokMSA_id:067962 AF365809 clone BM89PA4BF2 prokMSA_id:067961 AF365810 clone BM89PA4BG8 prokMSA_id:067960 AF365811 clone BM89PA4DBA12 prokMSA_id:067913 AF365863 clone BT60PA9BF9 prokMSA_id:067911 AF365865 clone BT60PA9BE11 prokMSA_id:024363 AF367392 gamma clone D068 prokMSA_id:029088 AF369647 Gamma- AB008 prokMSA_id:043370 AF369718 gamma clone 26 prokMSA_id:032249 AF428742 clone CR98-5-12 prokMSA_id:032563 AF428882 clone CR98-24-76 prokMSA_id:022434 AF441873 gamma clone CD14G9 prokMSA_id:046162 AF441875 gamma clone CD14F2 prokMSA_id:029712 AF442024 gamma clone CD14C12 prokMSA_id:047439 AF442026 gamma clone CD14B1 prokMSA_id:022587 AF442030 gamma clone CD14B7 prokMSA_id:040376 AF442031 gamma clone CD14B6 prokMSA_id:039098 AF442032 gamma clone CD14A3 prokMSA_id:022341 AF442033 gamma clone CD14E11 prokMSA_id:025951 AF442036 gamma clone CD14E5 prokMSA_id:022855 AF442037 gamma clone CD14E4 prokMSA_id:023106 AF442040 gamma clone CD14D1 prokMSA_id:022006 AF442041 gamma clone CD14D2 prokMSA_id:028891 AF442043 gamma clone CD14D4 prokMSA_id:046599 AF442044 gamma clone CD1401C3 prokMSA_id:041116 AF442046 gamma clone CD1401C4 prokMSA_id:018029 AF442047 gamma clone CD1401B12 prokMSA_id:041547 AF442050 gamma clone CD1401B2 prokMSA_id:041333 AF442055 gamma clone CD1401A5 prokMSA_id:052171 AF442056 gamma clone CD1401A4 prokMSA_id:052756 AF442057 gamma clone CD1401A7 prokMSA_id:021320 AF442058 gamma clone CD1401G9 prokMSA_id:033757 AF442059 gamma clone CD1401G8 prokMSA_id:018355 AF442060 gamma clone CD1401G2 prokMSA_id:051092 AF442061 gamma clone CD1401G5 prokMSA_id:028177 AF442062 gamma clone CD1401F8 prokMSA_id:045330 AF442063 gamma clone CD1401F5 prokMSA_id:046838 AF442064 gamma clone CD1401F4 prokMSA_id:034257 AF442065 gamma clone CD1401F7 prokMSA_id:017861 AF442066 gamma clone CD1401F6 prokMSA_id:020044 AF442067 gamma clone CD1401E11 prokMSA_id:048443 AF442069 gamma clone CD1401E6 prokMSA_id:048848 AF442073 gamma clone CD1401H1 prokMSA_id:044255 AF442074 gamma clone CD1401H3 prokMSA_id:051648 AF442075 gamma clone CD1401H2 prokMSA_id:050572 AF442076 gamma clone CD1401H5 prokMSA_id:035109 AF442077 gamma clone CD1401H4 prokMSA_id:034117 AF442078 gamma clone CD1401H6 prokMSA_id:069320 AF466899 gamma isolate DGGE band A4 prokMSA_id:034977 AF473987 gamma 68-30 prokMSA_id:058149 AF544062 gamma DGGE gel band H11-5 prokMSA_id:072838 AH010202 Lake Michigan sediment LMBA15 prokMSA_id:072113 AJ504479 isolate P1CN08 prokMSA_id:057106 AJ518430 clone Neu4P3-33 prokMSA_id:070125 AY012525 Lake Michigan sediment LMBA15 prokMSA_id:039999 AY038378 gamma clone CD3C11 prokMSA_id:026512 AY038560 gamma clone CD4D7 prokMSA_id:062454 AY102026 Gamma HTCC228 prokMSA_id:056167 AY133413 clone BB2_125 prokMSA_id:081665 AY187539 clone SD140 prokMSA_id:080720 AY193031 clone BMSA2 prokMSA_id:081140 AY193979 clone SD142 prokMSA_id:082820 AY251220 alpha clone 7A_1 prokMSA_id:093132 AY357895 Microbulbifer sp. NRL-CB10 prokMSA_id:092740 AY357901 Microbulbifer sp. NRL-TS4 prokMSA_id:093520 AY361921 clone P8-GEN-9 prokMSA_id:008174 L35473 clone SAR 135. prokMSA_id:008175 NONE Oceanospirillum multiglobuliferum ATCC 33336 . prokMSA_id:034460 U78924 gamma prokMSA_id:027524 U78930 gamma prokMSA_id:029315 U84014 marine 3' prokMSA_id:008173 Y17112 Balneatrix alpica str. 4-87 CIP 103589 . prokMSA_id:008188 Z77507 str. 2-100 C6. prokMSA_id:040559 Z77618 2-100 C26 prokMSA_id:043648 Z77634 2-400 C2.34 2.28.3.11.3 MARINOMONAS_ASSEMBLAGE 196 seqs 2.28.3.11.3.001 OTU 1 seq prokMSA_id:008216 AF159676 clone HstpL38. 2.28.3.11.3.002 OTU 1 seq prokMSA_id:008215 AF063027 str. ; ATCC 700492. 2.28.3.11.3.003 OTU 1 seq prokMSA_id:008214 X67025 Marinomonas vaga ATCC 27119 . 2.28.3.11.3.004 OTU 1 seq prokMSA_id:008213 AF159682 clone HstpL58. 2.28.3.11.3.005 OTU 1 seq prokMSA_id:008211 U70702 clone OM241. 2.28.3.11.3.006 OTU 11 seqs prokMSA_id:018199 AB074193 Marinomonas primoryensis strain:KMM 3633 prokMSA_id:052278 AB074194 Marinomonas primoryensis strain:KMM 3634 prokMSA_id:080892 AF468256 clone ARKDMS-70 prokMSA_id:079806 AF468285 clone ARKIA-132 prokMSA_id:008210 AJ238597 Marinomonas protea. prokMSA_id:067507 AY092065 Marinomonas protea strain 124 prokMSA_id:067509 AY092066 Marinomonas protea strain 154 prokMSA_id:067508 AY092067 Marinomonas protea strain 214 prokMSA_id:067504 AY092069 Marinomonas protea strain 54 prokMSA_id:067503 AY092070 Marinomonas protea strain 744 prokMSA_id:055603 AY092071 Marinomonas protea strain 794 2.28.3.11.3.007 OTU 1 seq prokMSA_id:008206 AB006765 Oceanospirillum jannaschii IFO 15466 . 2.28.3.11.3.008 OTU 1 seq prokMSA_id:008202 AF159681 clone HstpL70. 2.28.3.11.3.009 OTU 2 seqs prokMSA_id:008201 AB006767 Oceanospirillum kriegii IFO 15467 . prokMSA_id:008200 NONE Oceanospirillum kriegii ATCC 27133 . 2.28.3.11.3.010 OTU 1 seq prokMSA_id:008195 AF140000 Oceanospirillum ML-158 str. ML-158. 2.28.3.11.3.011 OTU 2 seqs prokMSA_id:008194 X92176 Pseudomonas stanieri NCIMB 2040. 2.28.3.11.3.012 OTU 3 seqs prokMSA_id:008193 AB021408 Pseudomonas iners IAM 1419. prokMSA_id:033885 AB052100 Marinobacterium sp. DMS-S1 prokMSA_id:008191 U58339 Marinobacterium georgiense str. KW-40. 2.28.3.11.3.013 OTU 1 seq prokMSA_id:008192 AB021367 ATCC 27130. 2.28.3.11.3.014 OTU 2 seqs prokMSA_id:008190 AF053734 Neptunomonas naphthovorans str. NAG-2N-126. prokMSA_id:079238 AF505721 Gamma UMB3A 2.28.3.11.3.015 OTU 1 seq prokMSA_id:016507 AF354615 gamma Arctic95D-6 2.28.3.11.3.016 OTU 1 seq prokMSA_id:070226 AY028196 Marine Tw-1 2.28.3.11.3.017 OTU 1 seq prokMSA_id:020487 AJ302699 Oceanospirillum sp. ME101 2.28.3.11.3.018 OTU 2 seqs prokMSA_id:026646 AF353237 gamma clone Arctic95B-13 prokMSA_id:022558 AF353238 gamma clone Arctic95B-7 2.28.3.11.3.019 OTU 1 seq prokMSA_id:055719 AY133410 clone OB3_198 2.28.3.11.3.020 OTU 1 seq prokMSA_id:059169 AY136131 Oceanobacter sp. RED65 2.28.3.11.3.021 OTU 1 seq prokMSA_id:025472 AF424096 gamma MERTZ_2CM_175 2.28.3.11.3.022 OTU 1 seq prokMSA_id:063932 AF424106 gamma MERTZ_2CM_247 2.28.3.11.3.023 OTU 1 seq prokMSA_id:027457 AF140002 Oceanospirillum sp. ML-165 2.28.3.11.3.024 OTU 1 seq prokMSA_id:030213 AF321017 Marinomonas sp. GOBB3-320 2.28.3.11.3.025 OTU 2 seqs prokMSA_id:046702 AF353242 gamma clone Arctic96B-1 prokMSA_id:030834 AF355037 gamma Arctic97A-11 2.28.3.11.3.026 OTU 1 seq prokMSA_id:031571 AB031601 gamma TIHP302-15 2.28.3.11.3.027 OTU 3 seqs prokMSA_id:031574 AF327033 coastal Alaskan Arctic AWS98-7e prokMSA_id:091662 AY135664 clone ANT18/2_35 prokMSA_id:091292 AY135673 clone ANT18/2_33 2.28.3.11.3.028 OTU 1 seq prokMSA_id:031898 AF195480 Marinomonas sp. kbs18 2.28.3.11.3.029 OTU 3 seqs prokMSA_id:036109 AJ431699 Thalassolituus oleivorans strain MIL-1 prokMSA_id:069871 AY095624 gamma OS3.5K-10 prokMSA_id:072812 AY095643 gamma OS3.5K-37 2.28.3.11.3.030 OTU 1 seq prokMSA_id:038461 AB077343 gamma clone:TYM--6 2.28.3.11.3.031 OTU 1 seq prokMSA_id:038972 AY028204 Marine Tw-9 2.28.3.11.3.032 OTU 1 seq prokMSA_id:039211 AF424178 gamma MERTZ_21CM_292 2.28.3.11.3.033 OTU 2 seqs prokMSA_id:044003 AF353239 gamma clone Arctic95B-8 prokMSA_id:039985 AF353240 gamma clone Arctic95B-19 2.28.3.11.3.034 OTU 1 seq prokMSA_id:055781 AY095658 gamma OS2K-7 2.28.3.11.3.035 OTU 2 seqs prokMSA_id:069433 AB041299 ECS29 prokMSA_id:079342 AF382127 clone ZA3706c 2.28.3.11.3.036 OTU 2 seqs prokMSA_id:043675 AF277515 Neptunomonas SIC.9029 prokMSA_id:079509 AF505730 Gamma UMB6E 2.28.3.11.3.037 OTU 1 seq prokMSA_id:046306 AF173967 Marinomonas communis 2.28.3.11.3.038 OTU 1 seq prokMSA_id:050527 AF277469 Marinomonas SIC.129 2.28.3.11.3.039 OTU 1 seq prokMSA_id:052606 AF195458 gamma kpj432f 2.28.3.11.3.040 OTU 1 seq prokMSA_id:053230 AF195481 Marinomonas sp. kbs31 2.28.3.11.3.041 OTU 4 seqs prokMSA_id:062463 AY102018 Gamma HTCC227 prokMSA_id:062461 AY102019 Gamma HTCC240 prokMSA_id:059782 AY133408 clone BB2_157 prokMSA_id:097734 AY386334 Marine gamma HTCC2148 2.28.3.11.3.042 OTU 1 seq prokMSA_id:063249 AF523974 clone FW23 2.28.3.11.3.043 OTU 10 seqs prokMSA_id:064976 AY095621 gamma OS3.5K-5 prokMSA_id:064975 AY095625 gamma OS3.5K-11 prokMSA_id:064959 AY095640 gamma OS3.5K-32 prokMSA_id:064954 AY095647 gamma OS3.5K-42 prokMSA_id:064953 AY095648 Oceanospirillum group OS3.5K-43 prokMSA_id:064949 AY095649 Oceanospirillum group OS3.5K-44 prokMSA_id:065143 AY095662 gamma OS2K-12 prokMSA_id:065134 AY095671 Oceanospirillum group OS2K-25 prokMSA_id:065133 AY095672 Oceanospirillum group OS2K-26 prokMSA_id:065132 AY095673 Oceanospirillum group OS2K-27 2.28.3.11.3.044 OTU 1 seq prokMSA_id:071009 AF513402 Marinomonas sp. 6-2 2.28.3.11.3.045 OTU 1 seq prokMSA_id:071553 AJ318203 gamma clone BIyi10 2.28.3.11.3.046 OTU 1 seq prokMSA_id:071651 AY012524 Lake Michigan sediment LMBA15 2.28.3.11.3.047 OTU 1 seq prokMSA_id:079245 AF505734 UMB8C 2.28.3.11.3.048 OTU 1 seq prokMSA_id:079392 AF382102 clone ZA2333c 2.28.3.11.3.049 OTU 2 seqs prokMSA_id:079531 AF382113 clone ZA3313c prokMSA_id:079486 AF382119 clone ZA3411c 2.28.3.11.3.050 OTU 1 seq prokMSA_id:079615 AF468248 clone ARKDMS-38 2.28.3.11.3.052 OTU 1 seq prokMSA_id:080239 AF468388 Arctic sea ice ARK10038 2.28.3.11.3.053 OTU 1 seq prokMSA_id:080438 AF468267 clone ARKCH4-6 2.28.3.11.3.054 OTU 1 seq prokMSA_id:080869 AB094860 clone:OHKB4.92 2.28.3.11.3.055 OTU 1 seq prokMSA_id:081232 AY216447 clone KM23 2.28.3.11.3.056 OTU 1 seq prokMSA_id:081975 AB086227 Carbazole-degrading CAR-SF 2.28.3.11.3.057 OTU 1 seq prokMSA_id:083839 AY226199 gamma clone ABBB-22 2.28.3.11.3.058 OTU 1 seq prokMSA_id:084202 AY226232 gamma clone BBBB-1 2.28.3.11.3.059 OTU 1 seq prokMSA_id:091158 AY344385 clone L8-79 2.28.3.11.3.060 OTU 1 seq prokMSA_id:091523 AY135666 clone ANT18/2_88 2.28.3.11.3.061 OTU 1 seq prokMSA_id:091912 AY135674 clone ANT18/2_48 2.28.3.11.3.062 OTU 1 seq prokMSA_id:092506 AY354132 clone pIR3BC10 2.28.3.11.3.063 OTU 1 seq prokMSA_id:092903 AY354189 clone pIR3BA10 2.28.3.11.3.064 OTU 1 seq prokMSA_id:095209 AY375069 clone B129 2.28.3.11.3.065 OTU 1 seq prokMSA_id:095836 AY375055 clone B152 2.28.3.11.3.066 OTU 1 seq prokMSA_id:096880 AY375148 clone D64 2.28.3.11.3.999 poor quality 94 seqs prokMSA_id:034489 AB041308 ECS38 prokMSA_id:041925 AB041310 ECS40 prokMSA_id:086536 AB106207 Marinomonas sp. FRA000021 prokMSA_id:031468 AF000278 marine prokMSA_id:052463 AF000282 marine prokMSA_id:021270 AF000636 marine pD-4 prokMSA_id:050110 AF000641 marine pD-9 prokMSA_id:018445 AF001507 marine pG-5 prokMSA_id:026360 AF001509 marine pG-13 prokMSA_id:008204 AF006606 Endobugula sertula str. BnSP. prokMSA_id:044521 AF025324 Gamma KAT11 prokMSA_id:021774 AF056467 Alteromonas sp. LX7 prokMSA_id:030559 AF141546 gamma clone CRE-PA78 prokMSA_id:070834 AF259599 gamma CtaxAus-33 prokMSA_id:022377 AF287041 gamma EC-B3 prokMSA_id:042741 AF296136 DMSP-degrading marine JA22 prokMSA_id:024316 AF296141 DMSP-degrading marine JA17 prokMSA_id:040491 AF296142 DMSP-degrading marine JA42 prokMSA_id:032472 AF296145 DMSP-degrading marine JA23 prokMSA_id:019643 AF296150 DMSP-degrading marine JA29 prokMSA_id:048184 AF296151 DMSP-degrading marine JA30 prokMSA_id:021657 AF296153 DMSP-degrading marine JA9 prokMSA_id:024937 AF321069 Oceanospirillum sp. U61 prokMSA_id:047666 AF332249 clone C12-37 prokMSA_id:069865 AF365517 clone BM89MF5BE7 prokMSA_id:067953 AF365818 clone BT60PA10BB12 prokMSA_id:032866 AF366026 Marine gamma LHAT7 prokMSA_id:018330 AF367404 gamma clone D130 prokMSA_id:029991 AF392658 clone TCA2 prokMSA_id:044774 AF392662 clone SCC1 prokMSA_id:035775 AF428791 clone CR98-5-61 prokMSA_id:040237 AF429112 clone CR99-24-02 prokMSA_id:031316 AF429187 clone CR99-2-01 prokMSA_id:037904 AF432271 gamma FO-0d-32 prokMSA_id:017911 AF432289 gamma FO-26d-66 prokMSA_id:053536 AF441955 gamma clone CD12B9 prokMSA_id:046022 AF441985 gamma clone CD12F8 prokMSA_id:034826 AF442022 gamma clone CD12H6 prokMSA_id:070291 AF466887 gamma isolate DGGE band C28 prokMSA_id:073677 AF466900 gamma isolate DGGE band A7 prokMSA_id:071732 AF466906 gamma isolate DGGE band D13A prokMSA_id:069375 AF466907 gamma isolate DGGE band D14 prokMSA_id:072040 AF466908 gamma isolate DGGE band D15 prokMSA_id:069556 AF466911 gamma isolate DGGE band D33 prokMSA_id:074653 AF466913 gamma isolate DGGE band D35 prokMSA_id:056007 AF466919 gamma isolate DGGE band B'6 prokMSA_id:072982 AF466924 gamma isolate DGGE band D13B prokMSA_id:055682 AF466925 gamma isolate DGGE band D'9 prokMSA_id:073079 AF466927 gamma isolate DGGE band D'7 prokMSA_id:064128 AF477898 'A58-UMH 8% pond' prokMSA_id:066792 AF500225 Marine SIMO IS-S74-238 prokMSA_id:067008 AF500293 Marine SIMO IS-S73-244 prokMSA_id:066974 AF503856 Marinomonas sp. 'Barents Sea 8' prokMSA_id:065773 AF507599 soil clone C166 prokMSA_id:065344 AF513614 clone Dpcom08 prokMSA_id:058258 AF544645 gamma DGGE gel band H7-2 prokMSA_id:019612 AJ006009 clone TBS23 prokMSA_id:038993 AJ302700 Oceanospirillum sp. ME113 prokMSA_id:021514 AJ306684 gamma strain NS0105 prokMSA_id:024905 AJ414128 Marinomonas sp. TG16-05 strain TG16-05 prokMSA_id:072397 AJ414130 Marinomonas sp. TG7-01 strain TG7-01 prokMSA_id:087298 AJ561160 gamma clone RB_OIL 219 prokMSA_id:087001 AJ561167 gamma clone RB_OIL 66 prokMSA_id:046463 AY038406 gamma clone CD5G11 prokMSA_id:034797 AY038407 gamma clone CD5G6 prokMSA_id:021625 AY038408 gamma clone CD5F12 prokMSA_id:066625 AY094502 gamma clone 1-34 prokMSA_id:070967 AY095620 gamma OS3.5K-1 prokMSA_id:064974 AY095623 gamma OS3.5K-9 prokMSA_id:064972 AY095626 gamma OS3.5K-12 prokMSA_id:065139 AY095665 Oceanospirillum group OS2K-16 prokMSA_id:070046 AY095823 Oceanospirillum group ARCT2-8 prokMSA_id:073862 AY095826 Oceanospirillum group ARCT2-12 prokMSA_id:064990 AY095919 gamma SH-310 prokMSA_id:076928 AY158036 Gamma UQ1 prokMSA_id:080466 AY192999 clone BolB2 prokMSA_id:080579 AY193236 clone Bol5 prokMSA_id:086206 AY214670 gamma clone SL2-2-H2R prokMSA_id:086021 AY226220 gamma clone ABBB-69 prokMSA_id:083067 AY256610 DGGE band A1-14 prokMSA_id:008207 D11181 Marinomonas communis IAM 12914. prokMSA_id:008218 D11182 Marinomonas vaga IAM 12923. prokMSA_id:008205 NONE Oceanospirillum jannaschii ATCC 27135 . prokMSA_id:008208 NONE Marinomonas communis ATCC 27118 . prokMSA_id:008212 NONE Marinomonas vaga ATCC 27119 . prokMSA_id:008196 U46534 clone OCEA2. prokMSA_id:008197 U46536 clone OCEA7. prokMSA_id:035709 U46537 oil field OCEA8 prokMSA_id:048851 U64027 Alteromonas sp. prokMSA_id:008198 X84601 str. SBR2068. prokMSA_id:008199 Z69318 str. s14. prokMSA_id:008209 Z77472 str. 1-700 C8. prokMSA_id:008203 Z77494 str. 2-100 C14. prokMSA_id:008217 Z77522 str. 2-400 C2.26. 2.28.3.11.4 ENVIRONMENTAL_CLONE_SAR86_SUBGROUP 12 seqs 2.28.3.11.4.001 OTU 1 seq prokMSA_id:060647 AF406525 gamma clone AEGEAN_183 2.28.3.11.4.999 poor quality 11 seqs prokMSA_id:049416 AF245627 gamma NAC1-18 prokMSA_id:008223 L11935 Sargasso Sea 10m depth clone BDA1-10. prokMSA_id:008222 L11936 Sargasso Sea 10m depth clone BDA1-11. prokMSA_id:008227 L11948 Sargasso Sea 10m depth clone BDA1-8. prokMSA_id:008219 L11959 Pacific Ocean station 16 100m depth clone prokMSA_id:008225 L11980 Pacific Ocean station 29 100m depth clone prokMSA_id:008228 L11984 Pacific Ocean station 29 100m depth clone prokMSA_id:008226 L11991 Pacific Ocean station 49 500m depth clone prokMSA_id:008224 L35461 clone SAR 86. prokMSA_id:008221 L35464 clone SAR 89. prokMSA_id:008220 L35469 clone SAR 156. 2.28.3.12 ALCANIVORAX_AND_FUNDIBACTER_GROUP 145 seqs 2.28.3.12.001 OTU 4 seqs prokMSA_id:062464 AY102017 Gamma HTCC160 prokMSA_id:096552 AY386336 Marine gamma HTCC2223 prokMSA_id:096871 AY386339 Marine gamma HTCC2080 prokMSA_id:008234 U70696 clone OM60. 2.28.3.12.008 OTU 1 seq prokMSA_id:017600 AB022200 Marine obligately oligotrophic POO-10 2.28.3.12.009 OTU 2 seqs prokMSA_id:020992 AF424063 gamma MERTZ_2CM_38 prokMSA_id:059785 AY133406 clone BB2_184 2.28.3.12.010 OTU 3 seqs prokMSA_id:047998 AB053128 Alcanivorax sp. OM-2 prokMSA_id:074609 AF432334 gamma 4%N-6d-109 prokMSA_id:022649 AF432335 gamma 4%N-6d-95 2.28.3.12.011 OTU 1 seq prokMSA_id:023838 AJ318161 gamma clone BIqi1 2.28.3.12.012 OTU 8 seqs prokMSA_id:072421 AB053132 Alcanivorax sp. PR-1 prokMSA_id:024418 AB055207 Alcanivorax sp. TE-9 prokMSA_id:067628 AF489287 Alcanivorax sp. isolate K461 prokMSA_id:089993 AJ567561 Alcanivorax sp. clone MBMPE48 prokMSA_id:080125 AY189748 Alcanivorax sp. B-5 prokMSA_id:089451 AY307381 Alcanivorax sp. OK2 prokMSA_id:097379 AY394865 Alcanivorax sp. EPR 6 prokMSA_id:096374 AY394868 Alcanivorax sp. EPR 10 2.28.3.12.013 OTU 1 seq prokMSA_id:025089 AF194404 gamma kpj53f 2.28.3.12.016 OTU 1 seq prokMSA_id:032122 AB053125 Alcanivorax sp. I4 2.28.3.12.017 OTU 2 seqs prokMSA_id:097282 AY386331 Marine gamma HTCC2149 prokMSA_id:032542 Z88579 isolate HRV1 2.28.3.12.019 OTU 34 seqs prokMSA_id:008231 AB005655 str. ST1. prokMSA_id:049326 AB053122 Alcanivorax sp. Nag1 prokMSA_id:041172 AB053123 Alcanivorax sp. Cro1 prokMSA_id:048177 AB053124 Alcanivorax sp. Mho1 prokMSA_id:016850 AB053127 Alcanivorax sp. Haw1 prokMSA_id:023703 AB053129 Alcanivorax sp. Abu-1 prokMSA_id:034163 AB053130 Alcanivorax sp. Oha-1 prokMSA_id:040587 AB055204 Alcanivorax sp. K2-1 prokMSA_id:028452 AB055205 Alcanivorax sp. K3-3 prokMSA_id:033663 AB055206 Alcanivorax sp. ST-T1 prokMSA_id:049307 AB055208 Alcanivorax sp. Wf-1 prokMSA_id:045125 AB058675 Alcanivorax sp. Shm-2 prokMSA_id:008230 AF062642 Alcanivorax borkumensis str. LE4. prokMSA_id:020619 AF143836 clone 4-Org2-35 prokMSA_id:041476 AF354603 gamma Arctic96BD-24 prokMSA_id:030293 AF354604 gamma Arctic96AD-24 prokMSA_id:017943 AF354609 gamma Arctic95B-15 prokMSA_id:040847 AF354610 gamma Arctic96A-12 prokMSA_id:079284 AF382125 clone ZA3711c prokMSA_id:019155 AF432314 gamma 0%N-26d-6 prokMSA_id:036780 AF432315 gamma 0%N-26d-48 prokMSA_id:077297 AF548762 Alcanivorax sp. clone SR11d6 prokMSA_id:077561 AF548763 Alcanivorax sp. clone 1%N-6d-3 prokMSA_id:008232 AJ001150 Fundibacter jadensis str. T9. prokMSA_id:035297 AJ302701 Alcanivorax borkumensis isolate ME103 prokMSA_id:028367 AJ302703 Alcanivorax borkumensis isolate ME111 prokMSA_id:082525 AJ557866 Marine arctic deep-sea HE12 prokMSA_id:065129 AY095675 gamma OS2K-30 prokMSA_id:086134 AY241548 Marine HP3 prokMSA_id:097143 AY394875 Alcanivorax sp. EPR 17 prokMSA_id:097257 AY394876 Alcanivorax sp. EPR 19 prokMSA_id:097776 AY394877 Alcanivorax sp. EPR 20 prokMSA_id:097214 AY394880 Alcanivorax sp. EPR 27 W prokMSA_id:008229 Y12579 Alcanivorax borkumensis str. SK2 DSM 11573 . 2.28.3.12.020 OTU 1 seq prokMSA_id:049300 AB022203 Marine obligately oligotrophic POO-9 2.28.3.12.021 OTU 1 seq prokMSA_id:049655 AF424147 gamma MERTZ_0CM_226 2.28.3.12.023 OTU 21 seqs prokMSA_id:024863 AB022201 Marine obligately oligotrophic POO-3 prokMSA_id:023132 AB022205 Marine obligately oligotrophic POO-7 prokMSA_id:074819 AB022208 Marine obligately oligotrophic POO-13 prokMSA_id:008233 AB022706 str. POO-15. prokMSA_id:043775 AB053126 Alcanivorax sp. I2 prokMSA_id:025508 AB053131 Alcanivorax sp. Tak-1 prokMSA_id:023790 AF235122 Gamma KT0221 prokMSA_id:064885 AF328761 Alcanivorax venusti strain ISO1 prokMSA_id:064882 AF328762 Alcanivorax venusti strain ISO4 prokMSA_id:051048 AF348709 gamma clone MPD-12 prokMSA_id:073634 AJ244731 Smegmaraptor porcuscaenosi strain V4.BO.19 prokMSA_id:061921 AJ244773 Smegmaraptor porcuscaenosi strain V4.MO.43 prokMSA_id:065057 AY095762 gamma HI-7 prokMSA_id:065049 AY095771 gamma HI-21 prokMSA_id:065046 AY095774 gamma HI-27 prokMSA_id:065045 AY095775 gamma HI-28 prokMSA_id:065044 AY095776 gamma HI-29 prokMSA_id:065043 AY095777 gamma HI-30 prokMSA_id:065040 AY095780 gamma HI-34 prokMSA_id:065038 AY095782 gamma HI-36 prokMSA_id:065032 AY095789 gamma HI-46 2.28.3.12.024 OTU 1 seq prokMSA_id:051855 AF348711 gamma clone MPD-14 2.28.3.12.025 OTU 1 seq prokMSA_id:053763 AF348710 gamma clone MPD-13 2.28.3.12.026 OTU 1 seq prokMSA_id:059783 AY133409 clone BB2_126 2.28.3.12.027 OTU 1 seq prokMSA_id:059786 AY133405 clone BB2_187 2.28.3.12.028 OTU 1 seq prokMSA_id:064892 AY095889 gamma pT-431 2.28.3.12.029 OTU 1 seq prokMSA_id:068301 AF361668 clone MN12BT3-35 2.28.3.12.030 OTU 1 seq prokMSA_id:084420 AY214720 gamma clone SL2-2-A11F 2.28.3.12.031 OTU 1 seq prokMSA_id:091107 AY345573 clone T7-M-E08 2.28.3.12.032 OTU 1 seq prokMSA_id:091732 AY344391 clone K60-9 2.28.3.12.033 OTU 1 seq prokMSA_id:098674 AY394866 Alcanivorax sp. EPR 7 2.28.3.12.999 poor quality 55 seqs prokMSA_id:023949 AB023606 NIC013 prokMSA_id:035791 AB041306 ECS36 prokMSA_id:039332 AB041307 ECS37 prokMSA_id:027862 AB042504 Halophilic TAG F1 prokMSA_id:017267 AF058347 marine pM-54 prokMSA_id:049444 AF090552 BHC12 prokMSA_id:051696 AF111861 UPA D3 prokMSA_id:034727 AF195459 gamma kpj282f prokMSA_id:021616 AF321065 Fundibacter sp. U20 prokMSA_id:027287 AF332280 clone C12-35 prokMSA_id:068293 AF361673 clone MN13BT4-47 prokMSA_id:068231 AF365492 clone BM89MF5BA6 prokMSA_id:068174 AF365559 clone BT49MF4BC5 prokMSA_id:068148 AF365587 clone BT60MF2BA9 prokMSA_id:055469 AF365732 clone BT60DS4BB7 prokMSA_id:045249 AF367401 gamma clone D069 prokMSA_id:039137 AF379702 clone SL37 prokMSA_id:019361 AF432306 gamma 0%N-6d-44 prokMSA_id:050711 AF432307 gamma 0%N-6d-28 prokMSA_id:036397 AF432311 gamma 0%N-6d-3 prokMSA_id:042633 AF441972 gamma clone CD12A7 prokMSA_id:063850 AF452600 gamma clone ML110J-12 prokMSA_id:079912 AF453544 gamma clone ML812M-19 prokMSA_id:019754 AJ250897 marine gamma DIL-2 prokMSA_id:047607 AJ302702 Alcanivorax borkumensis isolate ME106 prokMSA_id:071690 AJ302704 Alcanivorax sp. ME104 prokMSA_id:020756 AJ302706 Fundibacter sp. ME112 prokMSA_id:037481 AJ416660 gamma clone env.S019 prokMSA_id:024525 AJ416678 gamma clone env.S134 prokMSA_id:043434 AJ416685 Alcanivorax sp. STET7 strain str.STET7 prokMSA_id:043884 AJ416686 Alcanivorax sp. STET1 strain str.STET1 prokMSA_id:041657 AY038575 gamma clone CD2C8 prokMSA_id:064969 AY095629 gamma OS3.5K-17 prokMSA_id:065090 AY095724 gamma NL-111 prokMSA_id:065079 AY095735 gamma NL-129 prokMSA_id:065078 AY095736 gamma NL-130 prokMSA_id:065059 AY095760 gamma HI-5 prokMSA_id:065058 AY095761 gamma HI-6 prokMSA_id:065054 AY095764 gamma HI-11 prokMSA_id:065052 AY095767 gamma HI-15 prokMSA_id:065050 AY095769 gamma HI-19 prokMSA_id:065048 AY095772 gamma HI-23 prokMSA_id:065047 AY095773 gamma HI-26 prokMSA_id:065042 AY095778 gamma HI-32 prokMSA_id:065039 AY095781 gamma HI-35 prokMSA_id:065033 AY095788 gamma HI-45 prokMSA_id:065031 AY095791 gamma HI-48 prokMSA_id:064980 AY095927 gamma SH-324 prokMSA_id:077595 AY171332 clone s81 prokMSA_id:079636 AY193002 clone BolB7 prokMSA_id:079940 AY193239 clone Bol20 prokMSA_id:085886 AY214643 gamma clone SL2-1-D1 prokMSA_id:019510 U78931 gamma prokMSA_id:018240 Z77620 2-100 C5 prokMSA_id:042834 Z77630 2-400 C2.26 2.28.3.13 PSEUDOMONAS_AND_RELATIVES 3554 seqs 2.28.3.13.1 ACINETOBACTER_SUBGROUP 904 seqs 2.28.3.13.1.1 MRX.CATARRHALIS_SUBGROUP 276 seqs 2.28.3.13.1.1.008 OTU 3 seqs prokMSA_id:008298 AF005192 Moraxella phenylpyruvica str. 752/52. prokMSA_id:008297 U46144 Psychrobacter phenylpyruvicus ATCC 23333 . prokMSA_id:008296 X74898 Psychrobacter phenylpyruvicus NCTC 10526 . 2.28.3.13.1.1.009 OTU 4 seqs prokMSA_id:028350 A27627 M.catarrhalis prokMSA_id:008278 AF005185 Moraxella catarrhalis ATCC 25238 . prokMSA_id:008265 U10876 Moraxella catarrhalis ATCC 25238 . prokMSA_id:008295 X74903 Moraxella catarrhalis NCTC 11020 . 2.28.3.13.1.1.010 OTU 2 seqs prokMSA_id:048597 AF005186 Moraxella ovis prokMSA_id:008293 X74896 Moraxella branhamella ovis str. 199/55 NCTC 11227 . 2.28.3.13.1.1.011 OTU 2 seqs prokMSA_id:008261 AF005188 Moraxella cuniculi CCUG 2154. prokMSA_id:008287 X79221 Moraxella cuniculi. 2.28.3.13.1.1.012 OTU 12 seqs prokMSA_id:008266 AB021321 str. rJ3. prokMSA_id:030731 AB074738 Gamma S-St0-7B prokMSA_id:008262 AF005190 Moraxella osloensis str. 5873. prokMSA_id:020282 AF469309 gamma clone 33-PA57B00 prokMSA_id:044763 AJ269515 Moraxella osloensis strain LBV 438 prokMSA_id:072890 AJ505859 Moraxella osloensis strain PIV-10-1 prokMSA_id:059489 AJ508366 Moraxella osloensis . isolate MBRG 2.3 prokMSA_id:086658 AJ550856 Enhydrobacter aerosaccus strain LMG 21877 prokMSA_id:063603 AY043376 Moraxella osloensis prokMSA_id:087017 AY268331 clone B4 small subunit prokMSA_id:008285 X74897 Moraxella osloensis NCTC 10465 . prokMSA_id:008267 X95304 Moraxella osloensis str. Ben 58. 2.28.3.13.1.1.014 OTU 2 seqs prokMSA_id:008281 AF005187 Moraxella caviae str. GP 11 CCUG 355 . prokMSA_id:008280 X79220 Moraxella caviae. 2.28.3.13.1.1.016 OTU 27 seqs prokMSA_id:008236 AF005160 Moraxella lacunata str. A182 ATCC 17967 . prokMSA_id:008237 AF005161 Moraxella lacunata ATCC 17956. prokMSA_id:008238 AF005162 Moraxella lacunata str. E7992. prokMSA_id:008239 AF005163 Moraxella lacunata str. 50141. prokMSA_id:008240 AF005164 Moraxella lacunata str. 50142. prokMSA_id:008241 AF005165 Moraxella lacunata str. E2371. prokMSA_id:008242 AF005166 Moraxella lacunata CDC 9833. prokMSA_id:008243 AF005167 Moraxella lacunata str. E3808. prokMSA_id:008244 AF005168 Moraxella lacunata str. A947. prokMSA_id:008245 AF005169 Moraxella lacunata NCTC 7911. prokMSA_id:008246 AF005170 Moraxella lacunata ATCC 11748. prokMSA_id:008247 AF005171 Moraxella lacunata str. 28419/84. prokMSA_id:008268 AF005172 Moraxella nonliquefaciens NCTC 7784. prokMSA_id:008269 AF005173 Moraxella nonliquefaciens str. B2000. prokMSA_id:008270 AF005174 Moraxella nonliquefaciens str. 3179/66. prokMSA_id:008271 AF005175 Moraxella nonliquefaciens str. 13385/62. prokMSA_id:008272 AF005176 Moraxella nonliquefaciens str. P2581/88. prokMSA_id:008273 AF005177 Moraxella nonliquefaciens str. 2916/66. prokMSA_id:008274 AF005178 Moraxella nonliquefaciens str. B6270/90. prokMSA_id:008275 AF005179 Moraxella nonliquefaciens str. 826/61. prokMSA_id:008276 AF005180 Moraxella nonliquefaciens str. 270/60. prokMSA_id:008277 AF005181 Moraxella nonliquefaciens str. 672/58. prokMSA_id:008248 AF005184 Moraxella equi str. 327/72. prokMSA_id:038295 AF443789 Moraxella nonliquefaciens isolate 141365/00 prokMSA_id:041659 AF443790 Moraxella nonliquefaciens isolate 96127/99 prokMSA_id:008235 D64049 Moraxella lacunata str. A182 ATCC 17967 . prokMSA_id:008284 X74895 Moraxella lacunata str. A182 NCTC 11011 . 2.28.3.13.1.1.017 OTU 2 seqs prokMSA_id:008259 AF005182 Moraxella bovis ATCC 10900 . prokMSA_id:008260 AF005183 Moraxella bovis str. 5. 2.28.3.13.1.1.021 OTU 2 seqs prokMSA_id:008253 U39399 Psychrobacter immobilis. prokMSA_id:008255 U46139 Psychrobacter immobilis ACAM 286. 2.28.3.13.1.1.024 OTU 3 seqs prokMSA_id:008250 AF005191 Moraxella atlantae str. 1922T. prokMSA_id:020040 AJ312378 Moraxella atlantae strain 104/948 prokMSA_id:074867 AJ417491 Moraxella atlantae strain CCUG 10707 2.28.3.13.1.1.025 OTU 1 seq prokMSA_id:008249 AF005189 Moraxella cuniculi CCUG 27179. 2.28.3.13.1.1.026 OTU 2 seqs prokMSA_id:019990 AF417862 antarctic soil clone bh1.1 prokMSA_id:017979 AF417895 antarctic soil clone bh3.1 2.28.3.13.1.1.028 OTU 1 seq prokMSA_id:019444 AJ417490 Moraxella lincolnii strain CCUG 9405T 2.28.3.13.1.1.029 OTU 1 seq prokMSA_id:021187 AJ269511 Moraxella canis strain LMG 11194T N7 2.28.3.13.1.1.030 OTU 1 seq prokMSA_id:021542 AF419215 antarctic soil clone bh6.55 2.28.3.13.1.1.031 OTU 1 seq prokMSA_id:073531 AF513421 Psychrobacter sp. 33-2 2.28.3.13.1.1.032 OTU 1 seq prokMSA_id:056708 AB087260 Moraxella sp. ATCC 29468 strain:IAM 14971 2.28.3.13.1.1.045 OTU 2 seqs prokMSA_id:034561 AJ269507 Moraxella canis strain LMG 11186 P37 prokMSA_id:044716 AJ269509 Moraxella canis strain NCTC 4103 X31 2.28.3.13.1.1.046 OTU 1 seq prokMSA_id:038360 AF417889 antarctic soil clone bh2.51 2.28.3.13.1.1.047 OTU 1 seq prokMSA_id:040637 AF419203 antarctic soil clone bh5.53 2.28.3.13.1.1.052 OTU 2 seqs prokMSA_id:052888 AF441201 Psychrobacter jeotgali prokMSA_id:044896 AF441202 Psychrobacter jeotgali 2.28.3.13.1.1.055 OTU 1 seq prokMSA_id:054940 AF417898 antarctic soil clone bh3.5 2.28.3.13.1.1.058 OTU 1 seq prokMSA_id:064956 AY095641 Moraxellaceae OS3.5K-35 2.28.3.13.1.1.059 OTU 1 seq prokMSA_id:067496 AY092078 Psychrobacter sp. 583 strain 583 2.28.3.13.1.1.060 OTU 1 seq prokMSA_id:068934 AF417867 antarctic soil clone bh1.11 2.28.3.13.1.1.061 OTU 1 seq prokMSA_id:072469 AF513418 Psychrobacter sp. 3-3 2.28.3.13.1.1.063 OTU 103 seqs prokMSA_id:024089 AB016054 Psychrobacter pacificensis strain:NIBH P2J2 prokMSA_id:043031 AB016055 Psychrobacter pacificensis strain:NIBH P2J3 prokMSA_id:018681 AB016056 Psychrobacter pacificensis strain:NIBH P2J13 prokMSA_id:051808 AB016057 Psychrobacter pacificensis strain:NIBH P2K6=IFO 16279 prokMSA_id:036033 AB016058 Psychrobacter pacificensis strain:NIBH P2K17 prokMSA_id:033577 AB016059 Psychrobacter pacificensis strain:NIBH P2K18 prokMSA_id:079001 AB094456 Psychrobacter sp. MJYP.15.12 prokMSA_id:078644 AB094458 Psychrobacter sp. MJYP.25.32 prokMSA_id:078979 AB094460 Psychrobacter sp. 2216.25.11 prokMSA_id:088187 AB094794 Psychrobacter okhotskensis prokMSA_id:080205 AB094937 clone:OHKB11.18 prokMSA_id:008257 AF170743 Psychrobacter QSSC5-4 str. QSSC5-4. prokMSA_id:008305 AF170747 Psychrobacter QSSC8-7 str. QSSC8-7. prokMSA_id:050514 AF194191 Psychrobacter a2 prokMSA_id:052903 AF200213 Psychrophilic marine PS03 complete and -23S intergenic spacer region prokMSA_id:050912 AF260715 Psychrobacter sp. St1 prokMSA_id:037315 AF277488 Psychrobacter SIC.42393 prokMSA_id:043808 AF277528 Psychrobacter SIC.10360 prokMSA_id:039695 AF321024 Psychrobacter sp. GOBB3-301 prokMSA_id:051728 AF419196 antarctic soil clone bh5.29 prokMSA_id:042661 AF419209 antarctic soil clone bh6.31 prokMSA_id:080664 AF468266 clone ARKCH4-16 prokMSA_id:080063 AF468271 clone ARKCH4-25 prokMSA_id:079638 AF468382 Arctic sea ice ARK10000 prokMSA_id:080306 AF468383 Arctic sea ice ARK10009 prokMSA_id:080550 AF468390 Arctic sea ice ARK10052 prokMSA_id:080477 AF468396 Arctic sea ice ARK10139 prokMSA_id:079867 AF468405 Arctic sea ice ARK9987 prokMSA_id:068772 AF479327 Glacial ice Trans12 prokMSA_id:079292 AF505724 Gamma UMB3G prokMSA_id:079299 AF505725 UMB4B prokMSA_id:079201 AF505736 UMB8G prokMSA_id:079391 AF505739 UMB10E prokMSA_id:079453 AF505743 UMB13F prokMSA_id:079546 AF505746 Gamma UMB21A prokMSA_id:069076 AF513419 Psychrobacter sp. 5-3-3 prokMSA_id:089862 AF517755 Psychrobacter sp. 2pS prokMSA_id:062417 AF529097 gamma clone FTL207 prokMSA_id:074111 AJ244766 Psychrobacter sp. V4.BO.14 prokMSA_id:061923 AJ244767 Psychrobacter sp. V4.BE.55 prokMSA_id:072754 AJ244768 Psychrobacter sp. V4.ME.18 prokMSA_id:055524 AJ244771 Psychrobacter sp. V4.MO.27 prokMSA_id:071508 AJ272303 Psychrobacter sp. strain 116 prokMSA_id:043380 AJ297439 Psychrobacter aff. glacinola A1/C-aer/OII prokMSA_id:039704 AJ308373 Marine psychrotrophic MstK25 strain MstK25 prokMSA_id:027945 AJ309940 Psychrobacter submarinus strain KMM 225 prokMSA_id:024648 AJ309941 Psychrobacter marincola strain KMM 277 prokMSA_id:051114 AJ309942 Psychrobacter immobilis strain DSM 7229T prokMSA_id:069091 AJ310992 Psychrobacter sp. TAD1 strain TAD1 prokMSA_id:032985 AJ312213 Psychrobacter glacincola strain DSM 12194T prokMSA_id:074450 AJ421528 Psychrobacter faecalis strain Iso-46 prokMSA_id:077174 AJ430827 Psychrobacter fozii strain LMG 21280 prokMSA_id:075020 AJ430828 Psychrobacter luti strain LMG 21276 prokMSA_id:075780 AJ430829 Psychrobacter glacincola strain LMG 21273 prokMSA_id:075092 AJ430830 Psychrobacter glacincola strain LMG 21274 prokMSA_id:028643 AJ431338 Psychrobacter sp. ikaite c11 isolate ikaite c11 prokMSA_id:085442 AJ437696 Psychrobacter pulmonis strain CECT 5989T prokMSA_id:086349 AJ440989 Antarctic R-8160 strain R-8160 prokMSA_id:063467 AJ495805 Psychrobacter sp. p3C prokMSA_id:079312 AJ539102 Psychrobacter glacialis strain DD43 prokMSA_id:079510 AJ539104 Psychrobacter salsus strain DD48 prokMSA_id:079455 AJ539105 Psychrobacter adeliae strain SJ14 prokMSA_id:093308 AJ551093 Psychrobacter sp. wp8 isolate wp8 prokMSA_id:093781 AJ551095 Hyphomicrobium sp. wp14 isolate wp14 prokMSA_id:094097 AJ551096 Psychrobacter sp. wp16 isolate wp16 prokMSA_id:093651 AJ551098 Psychrobacter sp. wp18 isolate wp18 prokMSA_id:093245 AJ551101 Psychrobacter sp. wp21 isolate wp21 prokMSA_id:093306 AJ551107 Psychrobacter sp. wp30 isolate wp30 prokMSA_id:093494 AJ551110 Pseudomonas sp. wp33 isolate wp33 prokMSA_id:093441 AJ551112 Psychrobacter sp. wp37 isolate wp37 prokMSA_id:093270 AJ551116 Psychrobacter sp. mp2 isolate mp2 prokMSA_id:094032 AJ551122 Psychrobacter sp. mp9 isolate mp9 prokMSA_id:093479 AJ551125 Psychrobacter sp. es3 isolate es3 prokMSA_id:093964 AJ551127 Psychrobacter sp. es5 isolate es5 prokMSA_id:090238 AJ577812 Psychrobacter sp. DVS 9a strain DVS 9a prokMSA_id:089532 AJ577813 Psychrobacter sp. DVS 4c strain DVS 4c prokMSA_id:096330 AJ584831 Psychrobacter psychrophila isolate CMS 30 prokMSA_id:098854 AJ584832 Psychrobacter vallis isolate CMS 39 prokMSA_id:096172 AJ584833 Psychrobacter aquatica isolate CMS 56 prokMSA_id:027938 AY057116 Psychrobacter meningitidis prokMSA_id:078688 AY159792 Psychrobacter glacincola prokMSA_id:078573 AY159801 Psychrobacter sp. B51 prokMSA_id:082179 AY165583 Antarctic sea ice clone ANTXI/4_14-26 prokMSA_id:081197 AY165598 Arctic sea ice clone ARKXVI/2-136 prokMSA_id:082289 AY167281 Psychrobacter glacincola strain ANT9104 prokMSA_id:081385 AY167286 Psychrobacter sp. ANT9153 prokMSA_id:082182 AY167301 Psychrobacter glacincola strain ANT9221 prokMSA_id:082364 AY167308 Psychrobacter glacincola strain ANT9253 prokMSA_id:082102 AY167310 Psychrobacter glacincola strain ANT9276b prokMSA_id:080503 AY198113 Psychrobacter sp. HLA prokMSA_id:080870 AY220720 gamma clone WCPAP16 prokMSA_id:090168 AY321383 clone H51 prokMSA_id:096363 AY378185 Extreme arid zone HX-IE13 prokMSA_id:098657 AY382586 Psychrobacter sp. 9-2 prokMSA_id:097942 AY383042 Psychrobacter sp. DY11-4 prokMSA_id:097236 AY383045 Psychrobacter sp. DY9-2 prokMSA_id:008292 U85875 Psychrobacter sp. str. IC008. prokMSA_id:008300 U85876 Psychrobacter glacincola str. IC084. prokMSA_id:008301 U85877 Psychrobacter glacincola str. IC007. prokMSA_id:008302 U85878 Psychrobacter glacincola str. IC018. prokMSA_id:008254 U85880 Psychrobacter immobilis str. IC040. prokMSA_id:008306 X86614 Moraxella sp. str. 80-79. prokMSA_id:008258 X86615 Moraxella sp. str. AG-24. 2.28.3.13.1.1.064 OTU 1 seq prokMSA_id:079540 AJ539103 Psychrobacter halophilus strain DD2 2.28.3.13.1.1.065 OTU 1 seq prokMSA_id:079680 AF468247 clone ARKDMS-25 2.28.3.13.1.1.066 OTU 1 seq prokMSA_id:079797 AY220707 gamma clone WCPAP3 2.28.3.13.1.1.067 OTU 1 seq prokMSA_id:080188 AF468252 clone ARKDMS-9 2.28.3.13.1.1.068 OTU 1 seq prokMSA_id:097342 AY375124 clone F41 2.28.3.13.1.1.069 OTU 1 seq prokMSA_id:097518 AY375119 clone F36 2.28.3.13.1.1.999 poor quality 89 seqs prokMSA_id:033384 AB042516 methane-seep sediment SB-3 prokMSA_id:032827 AF025555 Psychrobacter glacincola prokMSA_id:022301 AF025577 Moraxella sp. ANT7 prokMSA_id:016877 AF025579 Psychrobacter sp. ANT9 prokMSA_id:037220 AF192339 Moraxella catarrhalis 1 prokMSA_id:041825 AF192340 Moraxella catarrhalis 2 prokMSA_id:037189 AF192341 Moraxella catarrhalis 3 prokMSA_id:042670 AF194190 Psychrobacter glacincola clone a1d prokMSA_id:036154 AF194192 Psychrobacter glacincola clone a3d prokMSA_id:051957 AF194193 Psychrobacter a4r prokMSA_id:029147 AF194194 Psychrobacter glacincola clone a5d prokMSA_id:021208 AF261040 Psychrobacter sp. SKA18 prokMSA_id:073024 AF262745 Endocytic Noc5 prokMSA_id:044660 AF277527 Psychrobacter SIC.10359 prokMSA_id:052076 AF296143 DMSP-degrading marine JA31 prokMSA_id:047107 AF296144 DMSP-degrading marine JA32 prokMSA_id:023020 AF296149 DMSP-degrading marine JA45 prokMSA_id:038075 AF296156 DMSP-degrading marine JA16 prokMSA_id:060670 AF406395 gamma clone AEGEAN_102_27F prokMSA_id:060669 AF406397 gamma clone AEGEAN_114_27F prokMSA_id:035641 AF417912 antarctic soil clone bh4.60 prokMSA_id:035315 AF417914 antarctic soil clone bh4.66 prokMSA_id:036119 AF417915 antarctic soil clone bh5.2 prokMSA_id:026142 AF419194 antarctic soil clone bh5.19 prokMSA_id:048593 AF419210 antarctic soil clone bh6.39 prokMSA_id:079652 AF468384 Arctic sea ice ARK10012 prokMSA_id:066976 AF503854 Psychrobacter sp. 'Barents Sea 19' prokMSA_id:066975 AF503855 Pseudoalteromonas sp. 'Barents Sea 16' prokMSA_id:070752 AF513416 Psychrobacter sp. 1-7-1 prokMSA_id:072105 AF513417 Psychrobacter sp. 1-2 prokMSA_id:070427 AF513420 Psychrobacter sp. 12-1-3 prokMSA_id:072187 AJ244769 Psychrobacter sp. V4.BE.04 prokMSA_id:061920 AJ244772 Psychrobacter sp. V4.MS.26 prokMSA_id:008279 AJ247218 Moraxella catarrhalis ATCC 25238 . prokMSA_id:051485 AJ247219 Moraxella catarrhalis prokMSA_id:008282 AJ247220 Moraxella caviae str. GP 11 ATCC 14659 . prokMSA_id:031182 AJ247221 Moraxella cuniculi prokMSA_id:044233 AJ247222 Moraxella ovis prokMSA_id:008263 AJ247223 Moraxella bovis LMG 986. prokMSA_id:008264 AJ247224 Moraxella bovis LMG 1006. prokMSA_id:018472 AJ247225 Moraxella canis prokMSA_id:020167 AJ247226 Moraxella equi prokMSA_id:008252 AJ247227 Moraxella lacunata str. A182 ATCC 17967 . prokMSA_id:034002 AJ247228 Moraxella lacunata prokMSA_id:036492 AJ247229 Moraxella lincolnii prokMSA_id:027203 AJ247230 Moraxella nonliquefaciens prokMSA_id:017870 AJ247231 Moraxella nonliquefaciens prokMSA_id:024085 AJ247232 Moraxella osloensis prokMSA_id:048114 AJ247233 Moraxella osloensis prokMSA_id:071350 AJ247264 Psychrobacter immobilis prokMSA_id:026228 AJ247266 Psychrobacter phenylpyruvicum prokMSA_id:032655 AJ251069 Psychrobacter glacincola strain 4A21Z prokMSA_id:033688 AJ269508 Moraxella canis strain LMG 11190 W4 prokMSA_id:021217 AJ269510 Moraxella canis strain LBV 436 prokMSA_id:044961 AJ269512 Moraxella canis strain O18 prokMSA_id:027235 AJ269513 Moraxella canis strain LMG 11183 U33 prokMSA_id:033103 AJ288307 Moraxella osloensis isolate UK14 prokMSA_id:022678 AJ297447 Psychrobacter aff. glacinola 4.21 prokMSA_id:030456 AJ344474 Psychrobacter glacincola strain OI-2-3 prokMSA_id:032565 AJ344475 Psychrobacter glacincola strain OI-18-3 prokMSA_id:031766 AJ344476 Psychrobacter urativorans strain OI-5-4 prokMSA_id:031220 AJ344477 Psychrobacter urativorans strain OI-6-4 prokMSA_id:021003 AJ344478 Psychrobacter urativorans strain OI-20-3 prokMSA_id:034422 AJ344479 Psychrobacter urativorans strain SI-2-8 prokMSA_id:039235 AJ344480 Psychrobacter urativorans strain SI-8-4 prokMSA_id:050048 AJ344481 Psychrobacter sp. strain SI-2-2 prokMSA_id:073153 AJ417492 Moraxella atlantae strain CCUG 31324 prokMSA_id:049005 AJ421812 clone CFB-6MS-9 prokMSA_id:033153 AY038375 gamma clone CD3A7 prokMSA_id:075687 AY161309 Psychrobacter sp. UST001116-0030 prokMSA_id:081295 AY167289 Psychrobacter sp. ANT9171 prokMSA_id:081156 AY187416 clone SA53 prokMSA_id:081890 AY187483 clone SC22 prokMSA_id:082019 AY193917 clone SB8 prokMSA_id:087452 AY226105 DGGE gel band e25 prokMSA_id:087322 AY294281 Moraxella lacunata isolate FM0100603 prokMSA_id:096167 AY378212 Glacial ice ML-30 prokMSA_id:008289 L13736 Moraxella catarrhalis. prokMSA_id:008256 U46140 Psychrobacter immobilis ACAM 282. prokMSA_id:008299 U46141 Psychrobacter urativorans str. B-57 ATCC 15174 . prokMSA_id:008304 U46142 Psychrobacter urativorans ACAM 300. prokMSA_id:008290 U46143 Psychrobacter frigidicola ACAM 304 . prokMSA_id:008286 U46145 Psychrobacter glacincola ACAM 483 . prokMSA_id:008291 U85874 Psychrobacter sp. str. MB6-21. prokMSA_id:008303 U85879 Psychrobacter glacincola str. ICP9. prokMSA_id:008283 X86616 Moraxella sp. str. S2-11. prokMSA_id:008294 X89357 clone AW5. prokMSA_id:008251 Y15855 Moraxella osloensis str. 3. prokMSA_id:008288 Z48282 Moraxella sp. str. S2.18. 2.28.3.13.1.2 ENVIRONMENTAL_CLONE_JN3C 1 seq 2.28.3.13.1.2.999 poor quality 1 seq prokMSA_id:008307 Z69268 clone JN3c. 2.28.3.13.1.3 ENVIRONMENTAL_CLONE_A25T 1 seq 2.28.3.13.1.3.999 poor quality 1 seq prokMSA_id:008308 X91448 clone A25t. 2.28.3.13.1.4 ENVIRONMENTAL_CLONE_A24OTP 1 seq 2.28.3.13.1.4.999 poor quality 1 seq prokMSA_id:008309 X91447 clone A24otp. 2.28.3.13.1.5 ACN.CALCOACETICUS_SUBGROUP 13 seqs 2.28.3.13.1.5.005 OTU 9 seqs prokMSA_id:079052 AJ534861 Acinetobacter sp. DW112b isolate DW112b prokMSA_id:093897 AY366481 Acinetobacter sp. C1010 prokMSA_id:096760 AY380830 Acinetobacter sp. BCH290703A prokMSA_id:008310 M34139 Acinetobacter calcoaceticus ATCC 33604. prokMSA_id:008312 X95305 Acinetobacter sp. str. Ben 59. prokMSA_id:008311 Z93434 Acinetobacter calcoaceticus str. group one ATCC 23055 . prokMSA_id:008313 Z93447 Acinetobacter sp. str. Group TU14 ATCC 17905. prokMSA_id:008314 Z93453 Acinetobacter sp. str. 382. prokMSA_id:008315 Z93454 Acinetobacter sp. str. 942. 2.28.3.13.1.5.006 OTU 2 seqs prokMSA_id:058303 AF543466 Pseudacinetobacter hongkongensis prokMSA_id:084033 AY251391 Alkanindiges hongkongensis 2.28.3.13.1.5.007 OTU 1 seq prokMSA_id:060267 AF509825 Acinetobacter tjernbergiae strain 7N16 2.28.3.13.1.5.999 poor quality 1 seq prokMSA_id:045404 AB013433 Acinetobacter sp. ML21 2.28.3.13.1.6 ACN.BAUMANNII_SUBGROUP 160 seqs 2.28.3.13.1.6.006 OTU 2 seqs prokMSA_id:008320 Z93982 clone T58. prokMSA_id:008321 Z93988 clone T23. 2.28.3.13.1.6.008 OTU 42 seqs prokMSA_id:008334 AB010848 str. HTC042. prokMSA_id:008335 AB010849 str. HTC038. prokMSA_id:079198 AB101444 Acinetobacter junii complete strain:S33 prokMSA_id:083317 AB109775 Acinetobacter baumannii strain:KF714 prokMSA_id:070104 AF220315 O11G12 prokMSA_id:048029 AF357182 Alvinella pompejana symbiont APG130A prokMSA_id:017792 AF417863 Acinetobacter junii prokMSA_id:017421 AF469280 gamma clone 33-FL131B99 prokMSA_id:058796 AF542963 Acinetobacter sp. ATCC 31012 prokMSA_id:008324 AJ009589 Acinetobacter calcoaceticus str. EB104. prokMSA_id:026791 AJ293690 Acinetobacter sp. phenon 4 strain LUH3313 Aci 583 prokMSA_id:071951 AJ293691 Acinetobacter sp. phenon 4 strain LUH4616 Aci602 prokMSA_id:036199 AJ295007 Acinetobacter venetianus strain ATCC 31012 prokMSA_id:038311 AJ410288 Acinetobacter sp. EVA12 strain EVA12 prokMSA_id:035986 AY055374 Acinetobacter sp. 'aerobic ED' prokMSA_id:074044 AY129795 Acinetobacter sp. clone GCPF22 prokMSA_id:078415 AY177359 Acinetobacter sp. 11 prokMSA_id:082073 AY187541 clone SD144 prokMSA_id:089139 AY191324 Acinetobacter sp. isolate ODP1176A11H_11 prokMSA_id:083425 AY260854 Acinetobacter sp. OK1 prokMSA_id:087534 AY278636 Acinetobacter genomosp. C1 prokMSA_id:086959 AY278939 Acinetobacter sp. TB41 prokMSA_id:087220 AY289925 Acinetobacter sp. ADP1 prokMSA_id:008317 U10874 Acinetobacter baumannii str. IGSchaub Biol 1 ATCC 15308. prokMSA_id:045446 U87119 Acinetobacter sp. 'SMCC B0103' prokMSA_id:008332 U87120 Acinetobacter 'SMCC B0107' SMCC B0107. prokMSA_id:045089 U87121 Acinetobacter sp. 'SMCC B0121' prokMSA_id:008333 U87125 Acinetobacter 'SMCC B0445' SMCC B0445. prokMSA_id:052886 U87126 Acinetobacter sp. 'SMCC B0448' prokMSA_id:037403 U87130 Acinetobacter sp. 'SMCC B0463' prokMSA_id:008316 X74899 Acinetobacter calcoaceticus NCTC 10292. prokMSA_id:008331 X80285 Acinetobacter calcoaceticus. prokMSA_id:008336 X81658 Acinetobacter junii DSM 1532. prokMSA_id:008326 X81660 Acinetobacter baumannii str. 2208 DSM 30007 . prokMSA_id:008327 X81664 Acinetobacter junii str. 2723/59 DSM 6964 . prokMSA_id:008318 X81667 Acinetobacter baumannii str. IGSchaub Biol 1 DSM 30008. prokMSA_id:008322 X89709 Acinetobacter sp. DSM 587. prokMSA_id:031900 Z93435 Acinetobacter baumanni strain ATCC 19606T prokMSA_id:037372 Z93438 Acinetobacter junii strain ATCC 17908T prokMSA_id:008323 Z93446 Acinetobacter sp. str. Group TU13 ATCC 17903. prokMSA_id:008329 Z93980 clone T57. prokMSA_id:008330 Z93987 clone T27. 2.28.3.13.1.6.009 OTU 1 seq prokMSA_id:038419 AF423212 soil clone 117-1 2.28.3.13.1.6.010 OTU 1 seq prokMSA_id:060260 AF509829 Acinetobacter gerneri 2.28.3.13.1.6.011 OTU 2 seqs prokMSA_id:060261 AF509828 Acinetobacter grimontii prokMSA_id:060262 AF509831 Acinetobacter johnsonii 2.28.3.13.1.6.012 OTU 1 seq prokMSA_id:060268 AF509824 Acinetobacter towneri strain 2N01 2.28.3.13.1.6.013 OTU 1 seq prokMSA_id:060270 AF509823 Acinetobacter towneri strain AB1110 2.28.3.13.1.6.016 OTU 3 seqs prokMSA_id:060271 AF509820 Acinetobacter baylyi strain B2 prokMSA_id:060274 AF509821 Acinetobacter baylyi strain C5 prokMSA_id:060277 AF509822 Acinetobacter baylyi strain A7 2.28.3.13.1.6.017 OTU 1 seq prokMSA_id:081170 AY187491 clone SC78 2.28.3.13.1.6.999 poor quality 106 seqs prokMSA_id:023567 AB013431 Acinetobacter sp. ML12 prokMSA_id:038762 AB013432 Acinetobacter sp. ML13 prokMSA_id:036112 AF314451 PHOS-HD43 prokMSA_id:053909 AF357185 Acinetobacter sp. C896 prokMSA_id:042779 AF390921 clone ICBMF3 prokMSA_id:017338 AF403722 Gamma MPD-83 prokMSA_id:030857 AF403723 Gamma MPD-84 prokMSA_id:025635 AF403726 Gamma MPD-90 prokMSA_id:033456 AF428881 clone CR98-24-75 prokMSA_id:026546 AF428905 clone CR98-35-23 prokMSA_id:024622 AF428929 clone CR98-35-47 prokMSA_id:046488 AF428930 clone CR98-35-48 prokMSA_id:030947 AF428954 clone CR98-35-72 prokMSA_id:039052 AF429089 clone CR99-7-55 prokMSA_id:033177 AF429126 clone CR99-24-16 prokMSA_id:040072 AF429225 clone CR99-2-39 prokMSA_id:071005 AF466929 gamma isolate DGGE band C2 prokMSA_id:068574 AF486699 clone E5-46-HS3I-218 prokMSA_id:068573 AF486700 clone E5-46-HS3I-219 prokMSA_id:055770 AF486702 clone E5-46-HS3I-221 prokMSA_id:068560 AF486720 clone E5-46-HS3I-239 prokMSA_id:068558 AF486721 clone E5-46-HS3I-240 prokMSA_id:055537 AF486723 clone E5-46-HS3I-242 prokMSA_id:068552 AF486730 clone E5-46-HS3I-249 prokMSA_id:068550 AF486732 clone E5-46-HS3I-251 prokMSA_id:068543 AF486739 clone E5-46-HS3I-258 prokMSA_id:068541 AF486741 clone E5-46-HS3I-260 prokMSA_id:056359 AF486743 clone E5-46-HS3I-262 prokMSA_id:068539 AF486744 clone E5-46-HS3I-263 prokMSA_id:068529 AF486754 clone E5-46-HS3I-274 prokMSA_id:068523 AF486761 clone E5-46-HS3I-281 prokMSA_id:068521 AF486762 clone E5-46-HS3I-282 prokMSA_id:068513 AF486772 clone E5-46-HS3I-292 prokMSA_id:068506 AF486781 clone E5-46-HS3I-301 prokMSA_id:055266 AF486795 clone E5-46-HS3P-319 prokMSA_id:067608 AF489947 Pseudomonas citronellolis strain TERIDB14 prokMSA_id:067604 AF489950 Pseudomonas citronellolis strain TERIDB17 prokMSA_id:070479 AF492826 Acinetobacter baumannii TERIPS 5013 prokMSA_id:073831 AF492827 Acinetobacter baumannii TERIPS 12005 prokMSA_id:067564 AF492828 Acinetobacter baumannii TERIPS 12007 prokMSA_id:069986 AF492829 Acinetobacter baumannii TERIPS 12008 prokMSA_id:070894 AF497505 Acinetobacter baumannii isolate TERIPS9010 prokMSA_id:073855 AF497506 Acinetobacter baumannii isolate TERI9001 prokMSA_id:070640 AF502131 Acinetobacter baumannii isolate TERIPS 9021 prokMSA_id:072442 AF502132 Acinetobacter baumannii isolate TERIPS 13013 prokMSA_id:070593 AF502133 Acinetobacter baumannii isolate TERIPS 13005 prokMSA_id:074438 AF502134 Acinetobacter baumannii isolate TERIPS 13023 prokMSA_id:070444 AF502135 Acinetobacter baumannii isolate TERIPS 12003 prokMSA_id:073824 AF502136 Acinetobacter baumannii isolate TERIPS 12010 prokMSA_id:070699 AF502137 Acinetobacter baumannii isolate TERIPS 12012 prokMSA_id:074105 AF502139 Acinetobacter baumannii isolate TERIPS 5020 prokMSA_id:073828 AF502141 Acinetobacter baumannii isolate TERIPS 5014 prokMSA_id:075968 AF539679 Acinetobacter sp. Ni38 prokMSA_id:008319 AJ247197 Acinetobacter baumannii str. 2208 DSM 30007 . prokMSA_id:035406 AJ247198 Acinetobacter baumannii prokMSA_id:008328 AJ247204 Acinetobacter junii str. 2723/59 DSM 6964 . prokMSA_id:030345 AJ391170 Acinetobacter sp. AS-6 prokMSA_id:076651 AJ517823 Acinetobacter sp. E65/B strain E65/B prokMSA_id:044363 AY048192 Acinetobacter sp. clone PR-VFA-2 prokMSA_id:071109 AY082336 Acinetobacter baumannii isolate TERIPS 5005 prokMSA_id:082800 AY092370 clone BI24 prokMSA_id:082293 AY187395 clone SA4 prokMSA_id:081068 AY187421 clone SA65 prokMSA_id:081346 AY187471 clone SB143 prokMSA_id:081530 AY187488 clone SC72 prokMSA_id:081301 AY193936 clone SB98 prokMSA_id:081361 AY193952 clone SB153 prokMSA_id:085169 AY221638 Acinetobacter sp. DSM 586 prokMSA_id:084944 AY256579 DGGE band S2-19 prokMSA_id:087882 AY269189 Acinetobacter baumannii strain TERI 7001 prokMSA_id:086826 AY269193 Acinetobacter baumannii strain TERI 7006 prokMSA_id:087295 AY269200 Acinetobacter baumannii strain TERI 7015 prokMSA_id:087781 AY269201 Acinetobacter baumannii strain TERI 7017 prokMSA_id:086820 AY269202 Acinetobacter baumannii strain TERI 7018 prokMSA_id:087786 AY269204 Acinetobacter baumannii strain TERI 7020 prokMSA_id:087373 AY269205 Pseudomonas aeruginosa strain TERI 7021 prokMSA_id:087178 AY269206 Pseudomonas aeruginosa strain TERI 7022 prokMSA_id:087072 AY269221 Acinetobacter baumannii strain TERI 1011 prokMSA_id:087034 AY269225 Acinetobacter johnsonii strain TERI 1016 prokMSA_id:087685 AY269226 Paenibacillus sp. TERI 1018 prokMSA_id:087536 AY269227 Achromobacter xylosoxidans subsp. xylosoxidans strain TERI 1019 prokMSA_id:087676 AY269228 Acinetobacter junii prokMSA_id:087923 AY269229 Achromobacter xylosoxidans subsp. xylosoxidans strain TERI 1022 prokMSA_id:086787 AY269236 Acinetobacter baumannii strain TERI 6001 prokMSA_id:087144 AY269237 Acinetobacter baumannii strain TERI 6002 prokMSA_id:086733 AY269238 Acinetobacter baumannii strain TERI 6003 prokMSA_id:087159 AY269239 Acinetobacter baumannii strain TERI 6004 prokMSA_id:086910 AY269241 Acinetobacter baumannii strain TERI 6007 prokMSA_id:087762 AY269242 Acinetobacter baumannii strain TERI 6006 prokMSA_id:087476 AY269243 Acinetobacter baumannii strain TERI 6009 prokMSA_id:087257 AY269244 Acinetobacter baumannii strain TERI 6011 prokMSA_id:086796 AY269248 Acinetobacter baumannii strain TERI 6016 prokMSA_id:087121 AY269249 Acinetobacter baumannii strain TERI 6017 prokMSA_id:086933 AY269254 Acinetobacter baumannii strain TERI 6025 prokMSA_id:087314 AY278940 Acinetobacter sp. TB42 prokMSA_id:088864 AY321964 Acinetobacter junii strain MF37 prokMSA_id:097360 AY394649 Acinetobacter sp. clone N10-9 prokMSA_id:008325 U71006 Acinetobacter venetianus str. B1/II. prokMSA_id:043603 U81721 clone vadinHA56 prokMSA_id:030378 U87127 Acinetobacter sp. 'SMCC B0451' prokMSA_id:017546 U87128 Acinetobacter sp. 'SMCC B0453' prokMSA_id:008338 X91273 clone G21. prokMSA_id:008339 X91524 clone K9. prokMSA_id:008341 Z69267 clone JN2c. prokMSA_id:008337 Z69282 clone JN17e. prokMSA_id:008340 Z69310 str. s6. 2.28.3.13.1.7 ACN.LWOFFII_SUBGROUP 452 seqs 2.28.3.13.1.7.016 OTU 1 seq prokMSA_id:008387 Z93986 clone T39. 2.28.3.13.1.7.017 OTU 3 seqs prokMSA_id:091262 AY345457 K87 prokMSA_id:008375 X81668 Acinetobacter calcoaceticus DSM 30009. prokMSA_id:008376 Z93448 Acinetobacter sp. str. M 151A. 2.28.3.13.1.7.019 OTU 156 seqs prokMSA_id:008393 AB002655 str. HTA557. prokMSA_id:008394 AB002656 str. HTA554. prokMSA_id:008395 AB002657 str. HTA527. prokMSA_id:008396 AB002658 str. HTA608. prokMSA_id:008397 AB002659 str. HTA580. prokMSA_id:008343 AB020207 Acinetobacter OM-E81 str. OM-H10. prokMSA_id:029502 AB062283 Acinetobacter sp. ST-550 prokMSA_id:078191 AB074592 gamma clone:Ape4_17 prokMSA_id:078070 AB074593 gamma clone:APe9_1 prokMSA_id:077683 AB098569 Acinetobacter sp. TUT1001 prokMSA_id:078104 AB099655 Acinetobacter johnsonii complete strain: S35 prokMSA_id:008384 AF015300 Acinetobacter Hop10 str. Hop10. prokMSA_id:051756 AF058382 Acinetobacter clone MT6 prokMSA_id:031911 AF143838 clone AF1.3 prokMSA_id:069970 AF143841 clone AF2-1D prokMSA_id:026929 AF150691 Elbe River snow isolate Iso32 prokMSA_id:008371 AF159045 Acinetobacter calcoaceticus str. A2. prokMSA_id:008391 AF188300 Acinetobacter johnsonii str. P152. prokMSA_id:008363 AF188302 Acinetobacter lwoffii str. A382. prokMSA_id:017643 AF189693 Acinetobacter sp. BC111 prokMSA_id:048977 AF189695 Acinetobacter sp. BC187 prokMSA_id:027360 AF214138 Acinetobacter sp. P1L001 prokMSA_id:018584 AF220313 O11F12 prokMSA_id:054369 AF220324 O14G3 prokMSA_id:033723 AF220328 O18A5 prokMSA_id:019785 AF285180 Acinetobacter sp. KL-9 prokMSA_id:034858 AF321029 Acinetobacter sp. GOBB3-C107 prokMSA_id:047756 AF324537 gamma BioIuz K32 prokMSA_id:035395 AF324538 gamma BioIuz K38 prokMSA_id:040632 AF336348 Acinetobacter sp. Wuba16 prokMSA_id:035636 AF336350 Acinetobacter sp. Wuba25 prokMSA_id:037719 AF336353 Acinetobacter sp. Wuba39 prokMSA_id:034359 AF356748 Acinetobacter sp. DF4 prokMSA_id:051684 AF390089 Acinetobacter sp. W-17 prokMSA_id:046650 AF417872 Acinetobacter calcoaceticus prokMSA_id:066815 AF430124 Acinetobacter sp. dcm5A prokMSA_id:064666 AF467294 Acinetobacter sp. clone 349_19 prokMSA_id:064662 AF467295 Acinetobacter sp. clone 91_18 prokMSA_id:072138 AF467298 Acinetobacter sp. clone 349_15 prokMSA_id:064657 AF467299 Acinetobacter sp. clone 88_6 prokMSA_id:064658 AF467300 Acinetobacter sp. clone 91_28 prokMSA_id:064656 AF467302 Acinetobacter sp. clone 88_17 prokMSA_id:064653 AF467305 Acinetobacter sp. clone 91_31 prokMSA_id:064652 AF467306 Acinetobacter sp. clone 91_11 prokMSA_id:080373 AF468386 Arctic sea ice ARK10033 prokMSA_id:056131 AF479380 Glacial ice M3C1.8K-TD8 prokMSA_id:066621 AF500278 Acinetobacter sp. SMCC B0208 prokMSA_id:056428 AF500317 Acinetobacter sp. PC11 prokMSA_id:061831 AF529331 gamma clone CLi289 prokMSA_id:060345 AF534195 clone Caf9 prokMSA_id:060341 AF534200 clone Glu57 prokMSA_id:060337 AF534204 clone Nap34 prokMSA_id:060335 AF534206 clone Phe100 prokMSA_id:060333 AF534208 clone Phe12 prokMSA_id:056588 AF534215 clone Phe66 prokMSA_id:058795 AF542962 Acinetobacter haemolyticus prokMSA_id:008392 AJ007008 Acinetobacter sp. str. LY1. prokMSA_id:008372 AJ009588 Acinetobacter calcoaceticus str. 69-V. prokMSA_id:008373 AJ009590 Acinetobacter sp. str. 2769A. prokMSA_id:061999 AJ244763 Acinetobacter sp. V4.BS.03 prokMSA_id:070386 AJ244764 Acinetobacter sp. V4.MO.29 prokMSA_id:073095 AJ244765 Acinetobacter sp. V4.ME.25 prokMSA_id:061248 AJ244776 Acinetobacter sp. V4.BE.09 prokMSA_id:024185 AJ252722 Potato plant root clone RC-III-46 prokMSA_id:039819 AJ275037 Acinetobacter sp. phenon 1 strain LUH 3299 prokMSA_id:048405 AJ275038 Acinetobacter sp. phenon 1 strain LUH 3792Type prokMSA_id:054545 AJ275039 Acinetobacter sp. phenon 1 strain LUH 4763 prokMSA_id:071054 AJ275041 Acinetobacter sp. phenon 2 strain LUH 4760 prokMSA_id:035076 AJ278311 Acinetobacter sp. phenon 2 strain LUH5832 prokMSA_id:043548 AJ291842 Acinetobacter sp. IrT-R5M2-138 prokMSA_id:030135 AJ291843 Acinetobacter sp. IrT-R5M2-7 prokMSA_id:040823 AJ293692 Acinetobacter sp. phenon 3 strain LUH1737 Aci646 prokMSA_id:033110 AJ293693 Acinetobacter sp. phenon 3 strain LUH1740 Aci649 prokMSA_id:052109 AJ293694 Acinetobacter sp. phenon 3 strain LUH1742T Aci651 prokMSA_id:028098 AJ296554 GR-B1-2-4 clone GR-B1-2-4 prokMSA_id:029243 AJ296555 GR-B1-2-39 clone GR-B1-2-39 prokMSA_id:052159 AJ296557 GR-B1-2-33 clone GR-B1-2-33 prokMSA_id:016831 AJ301569 gamma GR-B1-2-37 prokMSA_id:044449 AJ301674 Acinetobacter sp. LUH4547 strain LUH4547 prokMSA_id:042318 AJ301675 Acinetobacter sp. LUH4555 strain LUH4555 prokMSA_id:045836 AJ301676 Acinetobacter sp. LUH1470 strain LUH1470 prokMSA_id:017087 AJ303010 Acinetobacter sp. LUH3790 prokMSA_id:049424 AJ303011 Acinetobacter sp. RUH1139 prokMSA_id:016782 AJ303012 Acinetobacter sp. RUH53T prokMSA_id:047691 AJ303013 Acinetobacter sp. DVL00/879 prokMSA_id:064755 AJ319569 gamma clone Thailand-14-QC prokMSA_id:064750 AJ319576 gamma clone Thailand-7-QC prokMSA_id:044930 AJ410286 Acinetobacter sp. EVA10 strain EVA10 prokMSA_id:032580 AJ410287 Acinetobacter sp. EVA11 strain EVA11 prokMSA_id:017440 AJ410290 Acinetobacter sp. EVA14 strain EVA14 prokMSA_id:063478 AJ495807 Acinetobacter sp. p13F2 prokMSA_id:077135 AJ519628 gamma clone Sh765B-TzT-52 prokMSA_id:076209 AJ534671 gamma clone S15A-MN1 prokMSA_id:075963 AJ534674 gamma clone S15A-MN113 prokMSA_id:080988 AJ539232 Acinetobacter sp. 010793814 strain 0107 93814 prokMSA_id:093629 AJ551148 Acinetobacter sp. An9 isolate An9 prokMSA_id:094043 AJ551155 Acinetobacter sp. An17 isolate An17 prokMSA_id:089854 AJ576248 Sphingobacterium antarcticum isolate 6B1Y prokMSA_id:051407 AY028622 Acinetobacter sp. S2 prokMSA_id:019660 AY038906 Marine SE197 prokMSA_id:063612 AY043368 Acinetobacter sp. AU783 prokMSA_id:063614 AY043369 Acinetobacter sp. AU1523 prokMSA_id:039106 AY047216 Acinetobacter haemolyticus prokMSA_id:043048 AY055373 Acinetobacter sp. 'anoxic' prokMSA_id:059187 AY136083 Acinetobacter lwoffii prokMSA_id:081470 AY167273 Acinetobacter sp. ANT9054 prokMSA_id:077294 AY167841 Acinetobacter johnsonii strain SAFR-006 prokMSA_id:078649 AY176770 Acinetobacter lwoffii prokMSA_id:078702 AY189631 clone EarCan104 prokMSA_id:081305 AY237406 Acinetobacter sp. HJ2 prokMSA_id:085454 AY244764 Acinetobacter sp. 2002-2301217 prokMSA_id:084391 AY250852 gamma prokMSA_id:089870 AY277551 Acinetobacter lwoffii strain 1E prokMSA_id:090549 AY277552 Acinetobacter calcoaceticus strain AVP2-2 prokMSA_id:087496 AY278938 Acinetobacter sp. TB40 prokMSA_id:090231 AY315430 Acinetobacter sp. CC-RR1-52 prokMSA_id:094206 AY364536 Acinetobacter rhizosphaerae strain IH9 prokMSA_id:098802 AY378210 Glacial ice ML-22 prokMSA_id:095441 AY378240 Glacial ice MS-T2-09 prokMSA_id:097789 AY378245 Glacial ice MS-T10-09 prokMSA_id:098567 AY388421 clone Adhuright79 prokMSA_id:062904 E10982 of Corynebacterium sp. J1 strain prokMSA_id:008401 L20812 unnamed organism. prokMSA_id:008400 U10875 Acinetobacter lwoffii ATCC 17925. prokMSA_id:008402 U12215 str. B0258. prokMSA_id:052283 U87122 Acinetobacter sp. 'SMCC B0131' prokMSA_id:028326 U87123 Acinetobacter sp. 'SMCC B0134' prokMSA_id:021075 U87132 Acinetobacter sp. 'SMCC B0472' prokMSA_id:042901 U87134 Acinetobacter sp. 'SMCC B0525' prokMSA_id:008403 X74894 Acinetobacter lwoffii NCTC 5866 . prokMSA_id:008368 X81657 Acinetobacter calcoaceticus DSM 1139. prokMSA_id:008342 X81659 Acinetobacter sp. DSM 590. prokMSA_id:008378 X81661 Acinetobacter calcoaceticus str. group one DSM 30006 . prokMSA_id:008351 X81662 Acinetobacter haemolyticus DSM 6962 . prokMSA_id:008383 X81663 Acinetobacter johnsonii DSM 6963 . prokMSA_id:008359 X81665 Acinetobacter lwoffii DSM 2403 . prokMSA_id:008361 X86572 Acinetobacter sp. str. AC-40. prokMSA_id:008362 X86573 Acinetobacter sp. str. AG-06. prokMSA_id:008390 X86591 Acinetobacter sp. str. 1F-19. prokMSA_id:073056 X91447 sp. clone group A24otpmn prokMSA_id:008385 X95303 Acinetobacter johnsonii str. Ben 56. prokMSA_id:008389 Y11464 Acinetobacter sp. str. C6. prokMSA_id:022913 Z73451 species isolate Boom-3m-01 prokMSA_id:008379 Z93436 Acinetobacter haemolyticus str. group three ATCC 17922. prokMSA_id:031749 Z93437 Acinetobacter haemolyticus strain ATCC 17906T prokMSA_id:008364 Z93439 Acinetobacter johnsonii str. Group six ATCC 17979. prokMSA_id:028144 Z93440 Acinetobacter johnsonii strain ATCC 17909T prokMSA_id:031733 Z93441 Acinetobacter lwoffii strain ATCC 17925 prokMSA_id:008365 Z93442 Acinetobacter sp. str. Group nine ATCC 9957. prokMSA_id:008344 Z93443 Acinetobacter sp. str. Group ten ATCC 17924. prokMSA_id:043948 Z93444 Acinetobacter sp. strain ATCC 11171 prokMSA_id:008380 Z93449 Acinetobacter sp. str. 10090. prokMSA_id:008381 Z93450 Acinetobacter sp. str. 10095. prokMSA_id:008354 Z93451 Acinetobacter sp. str. 78. prokMSA_id:008355 Z93452 Acinetobacter sp. str. 79. prokMSA_id:008388 Z93992 clone T17. 2.28.3.13.1.7.020 OTU 2 seqs prokMSA_id:037494 AF451251 Acinetobacter sp. A17 prokMSA_id:008353 Z93989 clone T48. 2.28.3.13.1.7.021 OTU 9 seqs prokMSA_id:068774 AF479323 Glacial ice CanClear23 prokMSA_id:068749 AF479352 Glacial ice G50-TB2 prokMSA_id:068729 AF479373 Glacial ice SB150-2A1 prokMSA_id:062949 AF526908 Acinetobacter radioresistens strain 50v1 rrn prokMSA_id:075661 AJ519657 gamma clone GuBH2-AG-14 prokMSA_id:077033 AJ519659 gamma clone GuBH2-AD-51 prokMSA_id:076943 AJ519661 gamma clone GuBH2-AG-72 prokMSA_id:008347 X81666 Acinetobacter radioresistens str. FO-1 DSM 6976 . prokMSA_id:008349 Z93445 Acinetobacter sp. str. M 17694. 2.28.3.13.1.7.022 OTU 1 seq prokMSA_id:019349 AJ410289 Acinetobacter sp. EVA13 strain EVA13 2.28.3.13.1.7.023 OTU 1 seq prokMSA_id:030013 AJ296556 GR-B1-2-35 clone GR-B1-2-35 2.28.3.13.1.7.024 OTU 1 seq prokMSA_id:030973 AB022202 Marine obligately oligotrophic POO-6 2.28.3.13.1.7.025 OTU 2 seqs prokMSA_id:049347 AF390087 Acinetobacter sp. Sea-9 prokMSA_id:031677 AF392991 Acinetobacter sp. Sea-12 2.28.3.13.1.7.026 OTU 1 seq prokMSA_id:034411 AJ318127 clone BIfciv2 2.28.3.13.1.7.027 OTU 1 seq prokMSA_id:073559 AJ303014 Acinetobacter sp. LBV326 2.28.3.13.1.7.028 OTU 1 seq prokMSA_id:056661 AF509830 Acinetobacter tandoii 2.28.3.13.1.7.029 OTU 1 seq prokMSA_id:060258 AF509832 Acinetobacter genomosp. 11 2.28.3.13.1.7.030 OTU 1 seq prokMSA_id:060263 AF509827 Acinetobacter bouvetii 2.28.3.13.1.7.031 OTU 1 seq prokMSA_id:060264 AF509826 Acinetobacter tjernbergiae strain 7B02 2.28.3.13.1.7.032 OTU 1 seq prokMSA_id:060325 AF534217 clone Phe87 2.28.3.13.1.7.033 OTU 1 seq prokMSA_id:066776 AF500327 Acinetobacter sp. PG7 2.28.3.13.1.7.034 OTU 1 seq prokMSA_id:066780 AF500324 Acinetobacter sp. PF11 2.28.3.13.1.7.035 OTU 1 seq prokMSA_id:074353 AF513979 Alkane-degrading soil MVAB Hex1 complete 2.28.3.13.1.7.036 OTU 1 seq prokMSA_id:082361 AY187401 clone SA21 2.28.3.13.1.7.037 OTU 1 seq prokMSA_id:084904 AY251390 Alkanindiges hongkongensis 2.28.3.13.1.7.038 OTU 1 seq prokMSA_id:091559 AY345360 Ph20 2.28.3.13.1.7.039 OTU 1 seq prokMSA_id:095479 AY378230 Glacial ice MS-T10-01 2.28.3.13.1.7.999 poor quality 262 seqs prokMSA_id:048326 AB013430 Acinetobacter sp. ML11 prokMSA_id:028979 AB023604 NIC011 prokMSA_id:029842 AB042404 Vestimentiferan symbiont TW-2 prokMSA_id:020866 AB054972 Acinetobacter sp. 1722b prokMSA_id:069996 AF018068 OSW4 prokMSA_id:070733 AF059757 DgEPI5 prokMSA_id:036355 AF078329 Grassland soil clone sl1_024 prokMSA_id:062330 AF095647 Acinetobacter sp. prokMSA_id:016519 AF106596 Acinetobacter lwoffii prokMSA_id:072869 AF143844 clone AF2-4 prokMSA_id:029268 AF182024 Acinetobacter sp. BAL7 prokMSA_id:034197 AF188299 Acinetobacter calcoaceticus prokMSA_id:047063 AF188301 Acinetobacter lwoffii strain A391 prokMSA_id:017925 AF270950 clone IAFR302 prokMSA_id:034762 AF270951 clone IAFR311 prokMSA_id:020953 AF270960 clone IAFR516 prokMSA_id:052596 AF311990 Acinetobacter johnsonii a6aw prokMSA_id:022716 AF311991 Acinetobacter johnsonii a6b prokMSA_id:072560 AF311992 Acinetobacter johnsonii a25 prokMSA_id:073462 AF311993 Acinetobacter johnsonii a39b prokMSA_id:032310 AF311994 Acinetobacter johnsonii a22 prokMSA_id:068272 AF365445 clone BM89MF1BA8 prokMSA_id:068135 AF365601 clone BT60MF7BA12 prokMSA_id:068109 AF365627 clone BT60MF7BH6 prokMSA_id:068069 AF365678 clone BM89DS6BH9 prokMSA_id:022482 AF403728 Gamma MPD-95 prokMSA_id:045607 AF403730 Gamma MPD-97 prokMSA_id:029274 AF424755 gamma clone A2rb11 prokMSA_id:019204 AF428747 clone CR98-5-17 prokMSA_id:027720 AF429039 clone CR99-7-05 prokMSA_id:026149 AF429113 clone CR99-24-03 prokMSA_id:020609 AF429179 clone CR99-24-69 prokMSA_id:033197 AF451262 Acinetobacter sp. T45 prokMSA_id:052823 AF451848 Acinetobacter sp. dP prokMSA_id:047945 AF458217 Acinetobacter sp. E3 prokMSA_id:020915 AF458218 Acinetobacter calcoaceticus strain BP2 prokMSA_id:055491 AF467379 gamma clone 2318 prokMSA_id:068719 AF479382 clone pG500K-1 prokMSA_id:068720 AF479383 clone pG500K-41 prokMSA_id:068512 AF486774 clone E5-46-HS3I-294 prokMSA_id:067438 AF493302 clone pHS101 prokMSA_id:067436 AF493305 clone pHS104 prokMSA_id:067430 AF493311 clone pHS111 prokMSA_id:067420 AF493333 clone pHS137 prokMSA_id:055748 AF499408 clone BL-75 prokMSA_id:066142 AF510389 Acinetobacter sp. 'A.d. B' prokMSA_id:077525 AF527028 gamma 1BAF prokMSA_id:062017 AF529188 Acinetobacter sp. IST 103 prokMSA_id:072825 AF530918 Gamma sj15 prokMSA_id:070451 AF530942 Gamma wj34 prokMSA_id:061804 AF531852 Acinetobacter baumannii strain TERIPS_5019 prokMSA_id:061803 AF531853 Acinetobacter baumannii strain TERIPS_12004 prokMSA_id:073077 AJ007653 clone 1405-20 prokMSA_id:008360 AJ222834 str. 5-20. prokMSA_id:054481 AJ225373 Gamma species ; clone 16 prokMSA_id:042305 AJ232804 clone TRE12 prokMSA_id:008370 AJ247199 Acinetobacter calcoaceticus str. group one DSM 30006 . prokMSA_id:008352 AJ247200 Acinetobacter haemolyticus DSM 6962 . prokMSA_id:070677 AJ247201 Acinetobacter haemolyticus prokMSA_id:020308 AJ247202 Acinetobacter johnsonii prokMSA_id:070018 AJ247205 Acinetobacter lwoffii prokMSA_id:073392 AJ247206 Acinetobacter lwoffii prokMSA_id:071036 AJ247207 Acinetobacter lwoffii prokMSA_id:074254 AJ247208 Acinetobacter lwoffii prokMSA_id:071301 AJ247209 Acinetobacter radioresistens prokMSA_id:026792 AJ247210 Acinetobacter radioresistens prokMSA_id:070076 AJ275040 Acinetobacter sp. phenon 2 strain LUH 4591 prokMSA_id:043506 AJ289976 isolate CBS4-31 prokMSA_id:020682 AJ295420 Rape rhizosphere tsb008 prokMSA_id:018506 AJ405024 A11-K1 clone A11-K1 prokMSA_id:070748 AJ421176 clone C8-K20 prokMSA_id:080202 AJ437133 clone lf5-01 prokMSA_id:062603 AJ504511 isolate P1CN45 prokMSA_id:057533 AJ516046 Acinetobacter sp. LE/72 strain LE/72 prokMSA_id:076133 AJ517824 Acinetobacter sp. E23 strain E23 prokMSA_id:078935 AJ534870 Acinetobacter sp. DW149 isolate DW149 prokMSA_id:087760 AJ561159 gamma clone RB_OIL 218 prokMSA_id:087179 AJ561172 gamma clone RB_OIL 752 prokMSA_id:086948 AJ561186 Gamma GA-18 isolate GA-18 prokMSA_id:087753 AJ561189 Gamma GA-31 isolate GA-31 prokMSA_id:094990 AJ582252 Acinetobacter sp. clone AC56 prokMSA_id:037255 AY037753 earthworm cast clone C151 prokMSA_id:051873 AY038379 clone CD3D6 prokMSA_id:024186 AY039430 Soil S73M1 prokMSA_id:027153 AY039433 Soil S84D1 prokMSA_id:061624 AY043567 Gamma 2S2.B1 prokMSA_id:036584 AY048195 Acinetobacter sp. prokMSA_id:067821 AY083506 Acinetobacter sp. B-2-2 prokMSA_id:067819 AY083507 Acinetobacter sp. B-2-2 prokMSA_id:085146 AY092371 clone BI22 prokMSA_id:084760 AY092372 clone BI40 prokMSA_id:082863 AY092373 clone BI124 prokMSA_id:057671 AY119288 clone P1-1 prokMSA_id:057667 AY119289 clone P1-2 prokMSA_id:057670 AY119290 clone P1-5 prokMSA_id:057665 AY119291 clone P1-6 prokMSA_id:057666 AY119292 clone P1-9 prokMSA_id:057668 AY119293 clone P1-10 prokMSA_id:057664 AY119294 clone P1-12 prokMSA_id:057661 AY119296 clone P1-15 prokMSA_id:056245 AY119297 clone P1-17 prokMSA_id:057662 AY119298 clone P1-19 prokMSA_id:057659 AY119299 clone P1-21 prokMSA_id:057663 AY119300 clone P1-23 prokMSA_id:057660 AY119301 clone P1-24 prokMSA_id:055468 AY119302 clone P1-27 prokMSA_id:057658 AY119303 clone P1-29 prokMSA_id:057657 AY119304 clone P1-31 prokMSA_id:057653 AY119305 clone P1-35 prokMSA_id:057656 AY119306 clone P1-38 prokMSA_id:057654 AY119307 clone P2-2 prokMSA_id:057655 AY119308 clone P2-3 prokMSA_id:057652 AY119309 clone P2-4 prokMSA_id:057650 AY119310 clone P2-5 prokMSA_id:057651 AY119311 clone P2-6 prokMSA_id:057649 AY119312 clone P2-7 prokMSA_id:055577 AY119313 clone P2-8 prokMSA_id:057643 AY119314 clone P2-9 prokMSA_id:057646 AY119315 clone P2-10 prokMSA_id:057645 AY119316 clone P2-11 prokMSA_id:057642 AY119317 clone P2-12 prokMSA_id:057648 AY119318 clone P2-13 prokMSA_id:057647 AY119319 clone P2-15 prokMSA_id:057644 AY119320 clone P2-16 prokMSA_id:057641 AY119321 clone P2-17 prokMSA_id:057637 AY119323 clone P2-20 prokMSA_id:057639 AY119324 clone P2-21 prokMSA_id:056334 AY119325 clone P2-22 prokMSA_id:057640 AY119326 clone P2-27 prokMSA_id:057636 AY119327 clone P2-30 prokMSA_id:057633 AY119328 clone P2-32 prokMSA_id:057635 AY119329 clone P2-34 prokMSA_id:057638 AY119330 clone P2-35 prokMSA_id:057634 AY119331 clone P2-36 prokMSA_id:057632 AY119332 clone P2-37 prokMSA_id:057631 AY119333 clone P2-38 prokMSA_id:057630 AY119334 clone P2-39 prokMSA_id:057629 AY119335 clone P2-40 prokMSA_id:057626 AY119336 clone P2-41 prokMSA_id:057628 AY119337 clone P2-42 prokMSA_id:056567 AY119338 clone P2-43 prokMSA_id:056655 AY119339 clone P2-44 prokMSA_id:057627 AY119340 clone P2-45 prokMSA_id:057625 AY119341 clone P2-46 prokMSA_id:057624 AY119342 clone P2-48 prokMSA_id:057623 AY119344 clone P3-2 prokMSA_id:057622 AY119345 clone P3-3 prokMSA_id:057620 AY119346 clone P3-4 prokMSA_id:056229 AY119347 clone P3-5 prokMSA_id:057618 AY119348 clone P3-6 prokMSA_id:057619 AY119349 clone P3-7 prokMSA_id:057616 AY119350 clone P3-9 prokMSA_id:057617 AY119351 clone P3-10 prokMSA_id:057615 AY119352 clone P3-11 prokMSA_id:057613 AY119353 clone P3-12 prokMSA_id:057614 AY119354 clone P3-14 prokMSA_id:055693 AY119355 clone P3-15 prokMSA_id:057612 AY119356 clone P3-16 prokMSA_id:057611 AY119358 clone P3-18 prokMSA_id:057607 AY119359 clone P3-19 prokMSA_id:057610 AY119360 clone P3-20 prokMSA_id:057608 AY119361 clone P3-25 prokMSA_id:057609 AY119362 clone P3-27 prokMSA_id:057606 AY119364 clone P3-29 prokMSA_id:057605 AY119365 clone P3-30 prokMSA_id:057604 AY119366 clone P3-31 prokMSA_id:057603 AY119367 clone P3-32 prokMSA_id:057601 AY119368 clone P3-33 prokMSA_id:057602 AY119369 clone P3-34 prokMSA_id:057600 AY119370 clone P3-35 prokMSA_id:057598 AY119371 clone P3-36 prokMSA_id:057599 AY119372 clone P3-37 prokMSA_id:057597 AY119373 clone P3-38 prokMSA_id:057592 AY119374 clone P3-39 prokMSA_id:057594 AY119375 clone P3-40 prokMSA_id:057596 AY119376 clone P3-41 prokMSA_id:057702 AY119377 clone P4-2 prokMSA_id:057703 AY119378 clone P4-3 prokMSA_id:057701 AY119379 clone P4-4 prokMSA_id:055250 AY119380 clone P4-5 prokMSA_id:057704 AY119381 clone P4-6 prokMSA_id:057705 AY119382 clone P4-7 prokMSA_id:057698 AY119383 clone P4-8 prokMSA_id:055810 AY119384 clone P4-10 prokMSA_id:057700 AY119385 clone P4-11 prokMSA_id:057697 AY119387 clone P4-13 prokMSA_id:057696 AY119388 clone P4-14 prokMSA_id:057694 AY119389 clone P4-15 prokMSA_id:057692 AY119390 clone P4-17 prokMSA_id:057689 AY119391 clone P4-19 prokMSA_id:057693 AY119392 clone P4-20 prokMSA_id:057690 AY119393 clone P4-21 prokMSA_id:057695 AY119394 clone P4-22 prokMSA_id:057691 AY119395 clone P4-23 prokMSA_id:057688 AY119396 clone P4-24 prokMSA_id:056728 AY119397 clone P4-25 prokMSA_id:057685 AY119398 clone P4-26 prokMSA_id:057686 AY119400 clone P4-28 prokMSA_id:057687 AY119401 clone P4-29 prokMSA_id:057683 AY119402 clone P4-30 prokMSA_id:056410 AY119403 clone P4-31 prokMSA_id:057682 AY119404 clone P4-32 prokMSA_id:057684 AY119405 clone P4-33 prokMSA_id:057681 AY119406 clone P4-34 prokMSA_id:057676 AY119407 clone P4-35 prokMSA_id:057672 AY119408 clone P4-36 prokMSA_id:057680 AY119409 clone P4-37 prokMSA_id:057678 AY119410 clone P4-39 prokMSA_id:057677 AY119411 clone P4-40 prokMSA_id:057673 AY119412 clone P4-41 prokMSA_id:057679 AY119413 clone P4-42 prokMSA_id:057674 AY119414 clone P4-43 prokMSA_id:057675 AY119415 clone P4-44 prokMSA_id:057669 AY119416 clone P4-45 prokMSA_id:060896 AY135876 clone SG1-78 prokMSA_id:082285 AY187417 clone SA56 prokMSA_id:089029 AY198385 Furfural-degrading B1-8 prokMSA_id:086453 AY214748 beta clone BB-1-F9 prokMSA_id:083780 AY221635 Acinetobacter sp. ATCC 10153 prokMSA_id:086057 AY221636 Acinetobacter glutaminasificans prokMSA_id:084789 AY221637 Acinetobacter lwoffii prokMSA_id:083766 AY256580 DGGE band B2R-10 prokMSA_id:082618 AY275499 Gamma MSB3007 isolate MSB3007 prokMSA_id:092811 AY332749 Culex pipiens quinquefasciatus clone P2-4 prokMSA_id:092403 AY332750 Culex pipiens quinquefasciatus clone P4-34 prokMSA_id:092524 AY346313 Acinetobacter calcoaceticus HPC253 prokMSA_id:092892 AY346314 Acinetobacter calcoaceticus HPC253 prokMSA_id:098493 AY378224 Glacial ice ML-D2 prokMSA_id:098225 AY394632 Acinetobacter sp. clone N10-10 prokMSA_id:095959 AY395284 A-F-19 prokMSA_id:008356 L13734 Acinetobacter lwoffii. prokMSA_id:008350 L13735 Acinetobacter anitratus. prokMSA_id:008399 U09828 clone JAP752. prokMSA_id:008366 U37348 Acinetobacter sp. str. UN1P2. prokMSA_id:016286 U65962 Acinetobacter sp. spanning the V3-V4 region prokMSA_id:008345 U81671 clone vadinBB59. prokMSA_id:049329 U87117 Acinetobacter sp. 'SMCC B0018' prokMSA_id:023768 U87118 Acinetobacter sp. 'SMCC B0024' prokMSA_id:025646 U87124 Acinetobacter sp. 'SMCC B0261' prokMSA_id:008374 U87129 Acinetobacter 'SMCC B0460' SMCC B0460. prokMSA_id:023252 U87131 Acinetobacter sp. 'SMCC B0471' prokMSA_id:038463 U87133 Acinetobacter sp. 'SMCC B0524' prokMSA_id:008398 X84461 str. SBR1017. prokMSA_id:008367 X84543 str. SBR1118. prokMSA_id:008386 X89775 Acinetobacter johnsonii. prokMSA_id:008346 X91519 clone K4. prokMSA_id:070841 Y15852 Acinetobacter genospecies 15 prokMSA_id:072425 Y15853 Acinetobacter genospecies 9 prokMSA_id:072623 Y15854 Acinetobacter genospecies 7 prokMSA_id:008377 Z69281 clone JN16e. prokMSA_id:008382 Z69287 clone JA23h. prokMSA_id:008357 Z69319 str. s15. prokMSA_id:008358 Z69324 str. s20. prokMSA_id:008369 Z77484 str. 2-100 C1.20. prokMSA_id:027189 Z95589 prokMSA_id:052085 Z95600 prokMSA_id:021883 Z95601 prokMSA_id:047348 Z95602 prokMSA_id:024221 Z95604 prokMSA_id:045188 Z95608 prokMSA_id:008348 Z95611 str. MR26C. prokMSA_id:025972 Z95616 2.28.3.13.2 TEREDINIBACTER_SUBGROUP 65 seqs 2.28.3.13.2.001 OTU 1 seq prokMSA_id:008409 AF006607 Endobugula sertula str. BnPV. 2.28.3.13.2.002 OTU 2 seqs prokMSA_id:008408 AB013256 str. NKB4. prokMSA_id:084804 AY226275 gamma clone DBBB-100 2.28.3.13.2.003 OTU 1 seq prokMSA_id:008407 AB015541 str. BD2-13. 2.28.3.13.2.004 OTU 1 seq prokMSA_id:008406 AF055269 Microbulbifer 2-40 str. 2-40. 2.28.3.13.2.005 OTU 1 seq prokMSA_id:008405 Z31658 str. SCB11. 2.28.3.13.2.006 OTU 2 seqs prokMSA_id:083791 AY241407 Microbulbifer sp. UST010723-013 prokMSA_id:008404 U58338 Microbulbifer hydrolyticus str. IRE-31. 2.28.3.13.2.007 OTU 1 seq prokMSA_id:027115 AF228694 Gamma EHK-1 2.28.3.13.2.008 OTU 1 seq prokMSA_id:036509 AJ400346 marine ZD0117 2.28.3.13.2.009 OTU 1 seq prokMSA_id:038752 AB052965 Pseudomonas sp. ND137 2.28.3.13.2.010 OTU 2 seqs prokMSA_id:039120 AB054136 gamma HOC2 prokMSA_id:052455 AB054161 gamma HOC27 2.28.3.13.2.011 OTU 1 seq prokMSA_id:039706 AF102866 Unclassified Pseudomonas group 2.28.3.13.2.012 OTU 1 seq prokMSA_id:041721 AB052968 Pseudomonas sp. PE1 2.28.3.13.2.013 OTU 1 seq prokMSA_id:050315 AB031651 gamma TIHP368-52 2.28.3.13.2.014 OTU 3 seqs prokMSA_id:062457 AY102023 Gamma HTCC154 prokMSA_id:062456 AY102024 Gamma HTCC157 prokMSA_id:062459 AY102027 Gamma HTCC230 2.28.3.13.2.015 OTU 2 seqs prokMSA_id:064154 AF477865 clone 40-UMH 8% pond prokMSA_id:064151 AF477866 clone 70-UMH 8% pond 2.28.3.13.2.016 OTU 1 seq prokMSA_id:064153 AF477862 clone 33-UMH 8% pond 2.28.3.13.2.017 OTU 2 seqs prokMSA_id:074482 AY095886 Clostridiaceae pT-427 prokMSA_id:064893 AY095887 Clostridiaceae pT-428 2.28.3.13.2.018 OTU 2 seqs prokMSA_id:070281 AF482707 Pseudomonas sp. PB2 prokMSA_id:073400 AF482708 Pseudomonas sp. PB1 2.28.3.13.2.019 OTU 1 seq prokMSA_id:077433 AY150183 Symbiont LP1 of Lyrodus pedicellatus small subunit 2.28.3.13.2.020 OTU 1 seq prokMSA_id:077437 AY150184 Symbiont LP2 of Lyrodus pedicellatus small subunit 2.28.3.13.2.021 OTU 1 seq prokMSA_id:077863 AY172246 clone 2179 2.28.3.13.2.022 OTU 1 seq prokMSA_id:078086 AY171391 clone s100 2.28.3.13.2.023 OTU 1 seq prokMSA_id:080469 AF468250 clone ARKDMS-49 2.28.3.13.2.024 OTU 1 seq prokMSA_id:081821 AY224196 Microbulbifer sp. Th/B/38 2.28.3.13.2.025 OTU 1 seq prokMSA_id:084616 AY226289 gamma clone DBBB-37 2.28.3.13.2.026 OTU 1 seq prokMSA_id:092006 AY349465 Gamma WHOI JT-23 2.28.3.13.2.027 OTU 1 seq prokMSA_id:097508 AY386337 Marine gamma HTCC2246 2.28.3.13.2.999 poor quality 30 seqs prokMSA_id:008410 AF006608 Endobugula sertula str. BnTP. prokMSA_id:040220 AF017799 Oceanospirillum-like S1C18 prokMSA_id:040756 AF063028 2-40 prokMSA_id:052844 AF114577 gamma 400m-FREE-40 prokMSA_id:051693 AF141586 gamma prokMSA_id:027417 AF226221 maize root Zmrc188 prokMSA_id:037695 AF332265 clone C12-34 prokMSA_id:017918 AF367384 gamma clone D057 prokMSA_id:016824 AF434972 sponge symbiont JAWS16 prokMSA_id:020991 AF441874 gamma clone CD14F1 prokMSA_id:023617 AF442019 gamma clone CD12H5 prokMSA_id:046713 AF442025 gamma clone CD14B9 prokMSA_id:032295 AF442028 gamma clone CD14B5 prokMSA_id:020744 AF442035 gamma clone CD14E8 prokMSA_id:043367 AF442038 gamma clone CD14D11 prokMSA_id:024873 AF442039 gamma clone CD14D8 prokMSA_id:023175 AF442070 clone CD1401D11 prokMSA_id:073857 AF466914 gamma isolate DGGE band D40 prokMSA_id:032643 AF469291 gamma clone 33-PA143B98 prokMSA_id:064157 AF477857 clone 23-UMH 8% pond prokMSA_id:067311 AF494497 gamma clone GOBB3-B04-10-7 prokMSA_id:067304 AF494504 Alteromonadaceae clone GOBB3-B04-10-2 prokMSA_id:038767 AJ308266 clone F99_01 prokMSA_id:064916 AY095859 gamma pT-126 prokMSA_id:080938 AY193000 clone BolB4 prokMSA_id:081892 AY206866 clone uvs_af8 prokMSA_id:087952 AY283123 gamma clone NS-69 prokMSA_id:008411 M64338 Teredinibacter turnerae str. T7902 ATCC 39867. prokMSA_id:071351 M64339 Teredinibacter turnerae prokMSA_id:029348 Z77602 2-100 C1.19 2.28.3.13.3 ENVIRONMENTAL_CLONE_SMK199 1 seq 2.28.3.13.3.999 poor quality 1 seq prokMSA_id:008412 X78639 clone SMK199. 2.28.3.13.4 PS.OLEOVORANS 13 seqs 2.28.3.13.4.001 OTU 6 seqs prokMSA_id:030410 AF190219 Pseudomonas sp. RSHD3S15 prokMSA_id:068726 AF479376 Glacial ice M3C4.7K-2 prokMSA_id:090761 AJ575816 Pseudomonas sp. C36 strain C36 prokMSA_id:078563 AY177356 Pseudomonas sp. M13 prokMSA_id:008413 D84018 Pseudomonas oleovorans IAM 1508 . prokMSA_id:071549 D84018 Pseudomonas oleovorans complete 2.28.3.13.4.999 poor quality 7 seqs prokMSA_id:040289 AF392667 clone CEB1 prokMSA_id:027144 AF460954 Marine SIMO-IS213 prokMSA_id:063553 AY117575 Pseudomonas sp. DV66 prokMSA_id:063552 AY117576 Pseudomonas sp. DV67 prokMSA_id:076333 AY154625 earthworm cast clone c275 prokMSA_id:075058 AY158041 Pseudomonas oleovorans strain U61 prokMSA_id:089238 AY198384 Furfural-degrading B1-1 2.28.3.13.5 PS.AERUGINOSA_SUBGROUP 299 seqs 2.28.3.13.5.002 OTU 1 seq prokMSA_id:008443 AF023658 Pseudomonas aeruginosa str. CW-96-1. 2.28.3.13.5.003 OTU 1 seq prokMSA_id:008436 AF035210 Azotobacter paspali str. 11562. 2.28.3.13.5.006 OTU 1 seq prokMSA_id:008430 AF035213 Azotobacter salinestris str. 184. 2.28.3.13.5.007 OTU 24 seqs prokMSA_id:058403 AB007999 Pseudomonas sp. WAS2 prokMSA_id:008417 AB021329 str. rJ11. prokMSA_id:008418 AB021335 str. rJ17. prokMSA_id:008427 AB021396 Pseudomonas citronellolis ATCC 13674. prokMSA_id:077806 AB074629 gamma clone:APe4_9 prokMSA_id:020529 AB076857 Pseudomonas sp. P400Y-1 prokMSA_id:018230 AB076873 Pseudomonas sp. clone:OS1L-17 prokMSA_id:063071 AB088539 Pseudomonas sp. HBL4 prokMSA_id:063059 AB088549 Pseudomonas sp. LCL1 prokMSA_id:008429 AF039488 Pseudomonas 273 str. 273. prokMSA_id:008422 AF039489 Pseudomonas B13 str. B13. prokMSA_id:032513 AF208025 Pseudomonas sp. AT2 prokMSA_id:037740 AF309078 Pseudomonas sp. MB3 prokMSA_id:045700 AF441203 Pseudomonas sp. YG-1 prokMSA_id:079182 AF468449 Pseudomonas sp. Pss 14 prokMSA_id:008420 AJ009474 clone SJA-67. prokMSA_id:008421 AJ009491 clone SJA-129. prokMSA_id:035995 AJ306834 Pseudomonas sp. isolate ON3 prokMSA_id:043859 AJ311160 Pseudomonas sp. KIE171-B strain KIE171-B prokMSA_id:059491 AJ508363 Pseudomonas sp. . isolate MBRG 1.7 prokMSA_id:008416 U37339 Pseudomonas sp. str. CRE 12. prokMSA_id:008419 X96787 str. IpA-1. prokMSA_id:008428 Y13246 str. A3. prokMSA_id:008426 Z76659 Pseudomonas citronellolis DSM 50332 . 2.28.3.13.5.009 OTU 103 seqs prokMSA_id:008453 AB013255 str. NKB3. prokMSA_id:008454 AB015249 str. JTB12. prokMSA_id:008448 AB015516 str. BD1-3. prokMSA_id:008449 AB015554 str. BD3-13. prokMSA_id:008450 AB015563 str. BD4-16. prokMSA_id:008451 AB015564 str. BD5-7. prokMSA_id:008452 AB015573 str. BD6-3. prokMSA_id:008434 AB021373 Pseudomonas resinovorans ATCC 14235. prokMSA_id:024949 AB037545 Pseudomonas aeruginosa strain:ATCC 27853 prokMSA_id:047079 AB037546 Pseudomonas aeruginosa strain:#47 prokMSA_id:031055 AB037547 Pseudomonas aeruginosa strain:#129 prokMSA_id:052590 AB037548 Pseudomonas aeruginosa strain:#649 prokMSA_id:021740 AB037549 Pseudomonas aeruginosa strain:#777 prokMSA_id:052395 AB037550 Pseudomonas aeruginosa strain:#780 prokMSA_id:016918 AB037552 Pseudomonas aeruginosa strain:#790 prokMSA_id:051883 AB037553 Pseudomonas aeruginosa strain:#796 prokMSA_id:033622 AB037554 Pseudomonas aeruginosa strain:#797 prokMSA_id:043659 AB037557 Pseudomonas aeruginosa strain:#985-02 prokMSA_id:030862 AB037558 Pseudomonas aeruginosa strain:CP-1 prokMSA_id:021814 AB037559 Pseudomonas aeruginosa strain:H103 prokMSA_id:038254 AB037560 Pseudomonas aeruginosa strain:H636 prokMSA_id:074648 AB037561 Pseudomonas aeruginosa strain:H706 prokMSA_id:052867 AB037562 Pseudomonas aeruginosa strain:H707 prokMSA_id:016771 AB047273 Pseudomonas sp. CA10 prokMSA_id:029746 AB066238 Pseudomonas sp. PJ912 prokMSA_id:033174 AB066240 Pseudomonas sp. PJ921 prokMSA_id:030696 AB073312 Pseudomonas aeruginosa prokMSA_id:042626 AB074733 Gamma S-N2-24A prokMSA_id:078808 AB088116 Pseudomonas thermaerum prokMSA_id:078890 AB088750 Pseudomonas resinovorans prokMSA_id:077679 AB089116 gamma clone:Rs-N33 prokMSA_id:059706 AB091760 Pseudomonas aeruginosa complete prokMSA_id:086801 AB097174 Pseudomonas sp. J11 prokMSA_id:085661 AB108690 Pseudomonas aeruginosa complete prokMSA_id:083330 AB109752 Pseudomonas aeruginosa prokMSA_id:086865 AB109887 Pseudomonas pseudoalcaligenes strain: KF707 prokMSA_id:092064 AB117953 Pseudomonas aeruginosa strain:WatG prokMSA_id:093619 AB119535 Pseudomonas aeruginosa strain:T1 prokMSA_id:049178 AE004091 Pseudomonas aeruginosa PA01 complete genome prokMSA_id:059263 AE004501 Pseudomonas aeruginosa PA01 section 62 of 529 of the complete genome prokMSA_id:042050 AE004844 Pseudomonas aeruginosa PA01 section 405 of 529 of the complete genome prokMSA_id:051924 AE004883 Pseudomonas aeruginosa PA01 section 444 of 529 of the complete genome prokMSA_id:046706 AE004949 Pseudomonas aeruginosa PA01 section 510 of 529 of the complete genome prokMSA_id:008455 AF031152 Pseudomonas Bu34 str. Bu34. prokMSA_id:008447 AF076039 Pseudomonas aeruginosa. prokMSA_id:035045 AF094713 Pseudomonas aeruginosa strain ATCC 10145 prokMSA_id:072949 AF094714 Pseudomonas aeruginosa strain ATCC 4207 prokMSA_id:071400 AF094716 Pseudomonas aeruginosa strain ATCC 27316 prokMSA_id:039699 AF094718 Pseudomonas aeruginosa strain ATCC 15442 prokMSA_id:073809 AF094719 Pseudomonas aeruginosa strain ATCC 27853 prokMSA_id:070447 AF094720 Pseudomonas aeruginosa strain ATCC 33350 prokMSA_id:008440 AF137358 Pseudomonas aeruginosa. prokMSA_id:008446 AF157689 Pseudomonas aeruginosa str. 86351. prokMSA_id:045885 AF193514 Pseudomonas aeruginosa prokMSA_id:021552 AF216704 Pseudomonas aeruginosa 1001 prokMSA_id:028841 AF225956 Pseudomonas aeruginosa prokMSA_id:044181 AF227866 str. 61716 prokMSA_id:018018 AF237678 Pseudomonas aeruginosa complete prokMSA_id:049629 AF323262 Gram negative W1G-1 prokMSA_id:036294 AF323607 Pseudomonas aeruginosa DL1 prokMSA_id:050970 AF417876 Pseudomonas aeruginosa prokMSA_id:062409 AF529105 gamma clone FTL229 prokMSA_id:061832 AF529330 gamma clone CLi288 prokMSA_id:061195 AF531099 Pseudomonas aeruginosa prokMSA_id:061194 AF531100 Rhodococcus erythropolis prokMSA_id:008441 AJ009462 clone SJA-38. prokMSA_id:008442 AJ009472 clone SJA-64. prokMSA_id:008444 AJ249451 Pseudomonas aeruginosa str. AL98. prokMSA_id:071522 AJ308297 Pseudomonas aeruginosa isolate ICMP 8647 prokMSA_id:034429 AJ309500 Pseudomonas aeruginosa strain 42A2 NCBI 40045 prokMSA_id:045396 AJ387904 Pseudomonas sp. strain OLB-1 prokMSA_id:033845 AJ410281 Pseudomonas sp. EVA5 strain EVA5 prokMSA_id:022783 AJ410282 Pseudomonas sp. EVA6 strain EVA6 prokMSA_id:052445 AJ410283 Pseudomonas sp. EVA7 strain EVA7 prokMSA_id:022791 AJ410285 Pseudomonas sp. EVA9 strain EVA9 prokMSA_id:049042 AJ414029 prokMSA_id:082037 AJ549293 Pseudomonas aeruginosa isolate AT10 prokMSA_id:081887 AJ550306 Pseudomonas aeruginosa isolate OK1 prokMSA_id:066893 AY032726 Pseudomonas sp. HR 26 prokMSA_id:064390 AY120881 Pseudomonas sp. Gu5828 prokMSA_id:063482 AY121976 Pseudomonas aeruginosa strain DA15 prokMSA_id:075283 AY162138 Pseudomonas aeruginosa strain MO2 prokMSA_id:076656 AY162139 Pseudomonas aeruginosa strain BHP7-6 prokMSA_id:081370 AY187513 clone SD61 prokMSA_id:085025 AY226277 Pseudomonas sp. clone DBBB-105 prokMSA_id:085816 AY264292 Pseudomonas aeruginosa prokMSA_id:088574 AY268175 Pseudomonas aeruginosa strain ATCC 27853 prokMSA_id:088965 AY315455 Pseudomonas aeruginosa strain CC-101-2 prokMSA_id:091809 AY345381 JB18 prokMSA_id:091913 AY349466 Pseudomonas aeruginosa prokMSA_id:092516 AY360347 Pseudomonas aeruginosa prokMSA_id:096921 AY379974 Pseudomonas sp. AHL 2 prokMSA_id:008438 D87346 unnamed organism. prokMSA_id:008439 D87347 unnamed organism. prokMSA_id:008432 M34133 Pseudomonas aeruginosa str. NIH 18 ATCC 25330. prokMSA_id:048315 NC_002516 Pseudomonas aeruginosa PA01 complete genome prokMSA_id:094808 NZ_AABQ070 Pseudomonas aeruginosa UCBPP-PA14 Paer_1 whole genome shotgun prokMSA_id:008431 U37338 Pseudomonas sp. str. CRE 11. prokMSA_id:008437 U38445 Pseudomonas aeruginosa. prokMSA_id:008424 X06684 Pseudomonas aeruginosa DSM 50071 . prokMSA_id:008425 X99540 Pseudomonas anguilliseptica NCIMB 1949 . prokMSA_id:008435 Z76651 Pseudomonas aeruginosa LMG 1242 . prokMSA_id:070154 Z76672 P.aeruginosa strain DSM 50071T 2.28.3.13.5.010 OTU 5 seqs prokMSA_id:037950 AJ295331 Paederus sabaeus endosymbiont prokMSA_id:046183 AJ316016 Paederus fuscipes endosymbiont prokMSA_id:029570 AJ316017 Paederus melanurus endosymbiont prokMSA_id:034658 AJ316018 Paederus riparius endosymbiont prokMSA_id:030919 AJ316019 Paederidus ruficollis endosymbiont 2.28.3.13.5.011 OTU 2 seqs prokMSA_id:031434 AF302795 Pseudomonas sp. IMT37 prokMSA_id:038217 AF302796 Pseudomonas sp. IMT40 2.28.3.13.5.012 OTU 2 seqs prokMSA_id:071823 AF530069 Pseudomonas citronellolis strain TERIDB3 complete prokMSA_id:072643 AF530070 Pseudomonas citronellolis strain TERIDB9 complete 2.28.3.13.5.013 OTU 1 seq prokMSA_id:039514 AJ410284 Pseudomonas sp. EVA8 strain EVA8 2.28.3.13.5.014 OTU 2 seqs prokMSA_id:071972 X92133 sp. Lake Elmenteita isolate 45E3 prokMSA_id:043286 X92134 sp. Lake Nakuru isolate 52N3 2.28.3.13.5.015 OTU 1 seq prokMSA_id:043465 AJ311980 Pseudomonas thermotolerans strain CM3 2.28.3.13.5.016 OTU 1 seq prokMSA_id:046393 AJ289162 Cellvibrio sp. R4069 2.28.3.13.5.017 OTU 1 seq prokMSA_id:047459 AB066242 Pseudomonas sp. PJ311 2.28.3.13.5.018 OTU 1 seq prokMSA_id:061098 AF530074 Pseudomonas citronellolis strain TERIDB30 complete 2.28.3.13.5.019 OTU 1 seq prokMSA_id:061102 AF530072 Pseudomonas citronellolis strain TERIDB18 complete 2.28.3.13.5.020 OTU 1 seq prokMSA_id:064506 AF291818 Pseudomonas andersonii 2.28.3.13.5.021 OTU 1 seq prokMSA_id:066608 AF331974 Gamma HdN1 2.28.3.13.5.022 OTU 1 seq prokMSA_id:070116 AF530073 Pseudomonas citronellolis strain TERIDB26 complete 2.28.3.13.5.023 OTU 1 seq prokMSA_id:070557 AF530071 Pseudomonas citronellolis strain TERIDB13 complete 2.28.3.13.5.024 OTU 1 seq prokMSA_id:074387 AJ240921 gamma CHAB-III-7 5' 2.28.3.13.5.025 OTU 1 seq prokMSA_id:079317 AY187335 clone csbio160368 2.28.3.13.5.026 OTU 1 seq prokMSA_id:087147 AJ564064 Pseudomonas sp. W103-3 2.28.3.13.5.027 OTU 7 seqs prokMSA_id:088663 AY321400 clone L39 prokMSA_id:089824 AY321402 clone L44 prokMSA_id:090033 AY321403 clone L8 prokMSA_id:088465 AY321404 clone L9 prokMSA_id:089097 AY321412 clone M23 prokMSA_id:090029 AY321419 clone L35 prokMSA_id:090539 AY321423 clone L48 2.28.3.13.5.028 OTU 1 seq prokMSA_id:091237 AY336565 Azotobacter vinelandii DSM576 2.28.3.13.5.029 OTU 1 seq prokMSA_id:091296 AY345380 JB2 2.28.3.13.5.030 OTU 1 seq prokMSA_id:091537 AY336566 Azotobacter beijerinckii DSM378 2.28.3.13.5.999 poor quality 135 seqs prokMSA_id:045421 AB037551 Pseudomonas aeruginosa strain:#783 prokMSA_id:031012 AB037555 Pseudomonas aeruginosa strain:#885 prokMSA_id:041268 AB037556 Pseudomonas aeruginosa strain:#985 prokMSA_id:051558 AB037563 Pseudomonas aeruginosa strain:H814 prokMSA_id:038845 AB062598 Pseudomonas aeruginosa 5' side prokMSA_id:041902 AB062599 Pseudomonas aeruginosa 3' side prokMSA_id:088356 AB111829 prokMSA_id:089940 AB111830 prokMSA_id:088182 AB114204 Pseudomonas sp. VK12 prokMSA_id:093783 AB118666 Gamma Ara-4 strain:Ara-4 prokMSA_id:033684 AF058373 Pseudomonas clone MT5 prokMSA_id:031365 AF094715 Pseudomonas aeruginosa strain ATCC 15692 prokMSA_id:073701 AF094717 Pseudomonas aeruginosa strain ATCC 43731 prokMSA_id:049786 AF107073 Pseudomonas aeruginosa prokMSA_id:035355 AF298837 Pseudomonas aeruginosa prokMSA_id:042069 AF306655 Pseudomonas sp. Tinker soil 4 prokMSA_id:039134 AF332256 clone C12-23 prokMSA_id:068077 AF365667 clone BM89DS6BbE5 prokMSA_id:029945 AF376248 ckncm015-DS10 prokMSA_id:016751 AF390957 clone TFBME4 prokMSA_id:044947 AF390958 clone TFBMC1 prokMSA_id:044571 AF408930 Pseudomonas sp. C38C prokMSA_id:020052 AF408932 Pseudomonas sp. C34A prokMSA_id:019071 AF419219 Pseudomonas aeruginosa prokMSA_id:026516 AF448349 Pseudomonas citronellolis TERIDJ9 prokMSA_id:021054 AF448350 Pseudomonas citronellolis TERIDJ10 prokMSA_id:034627 AF448351 Pseudomonas citronellolis TERIDJ7 prokMSA_id:024878 AF448352 Pseudomonas citronellolis TERIDJ5 prokMSA_id:071873 AF448353 Pseudomonas citronellolis TERIDJ6 prokMSA_id:070403 AF448354 Pseudomonas citronellolis TERIDJ4 prokMSA_id:071646 AF448355 Pseudomonas citronellolis TERIDJ8 prokMSA_id:024990 AF453293 Pseudomonas sp. PsEA prokMSA_id:067621 AF489934 Pseudomonas citronellolis strain TERIDB1 prokMSA_id:067619 AF489935 Pseudomonas citronellolis strain TERIDB2 prokMSA_id:067620 AF489936 Pseudomonas citronellolis strain TERIDB3 prokMSA_id:067618 AF489937 Pseudomonas citronellolis strain TERIDB4 prokMSA_id:056123 AF489938 Pseudomonas citronellolis strain TERIDB5 prokMSA_id:074424 AF489939 Pseudomonas citronellolis strain TERIDB6 prokMSA_id:072106 AF489940 Pseudomonas citronellolis strain TERIDB7 prokMSA_id:067614 AF489941 Pseudomonas citronellolis strain TERIDB8 prokMSA_id:067617 AF489943 Pseudomonas citronellolis strain TERIDB10 prokMSA_id:067611 AF489944 Pseudomonas citronellolis strain TERIDB11 prokMSA_id:067610 AF489945 Pseudomonas citronellolis strain TERIDB12 prokMSA_id:067609 AF489946 Pseudomonas citronellolis strain TERIDB13 prokMSA_id:067607 AF489948 Pseudomonas citronellolis strain TERIDB15 prokMSA_id:067605 AF489949 Pseudomonas citronellolis strain TERIDB16 prokMSA_id:067597 AF492391 Pseudomonas citronellolis strain TERIDB20 prokMSA_id:067598 AF492392 Pseudomonas citronellolis strain TERIDB21 prokMSA_id:067596 AF492393 Pseudomonas citronellolis strain TERIDB22 prokMSA_id:067595 AF492394 Pseudomonas citronellolis strain TERIDB23 prokMSA_id:067594 AF492395 Pseudomonas citronellolis strain TERIDB24 prokMSA_id:071390 AF492396 Pseudomonas citronellolis strain TERIDB25 prokMSA_id:069930 AF492397 Pseudomonas citronellolis strain TERIDB26 prokMSA_id:067591 AF492398 Pseudomonas citronellolis strain TERIDB27 prokMSA_id:067587 AF492399 Pseudomonas citronellolis strain TERIDB28 prokMSA_id:070184 AF502138 Acinetobacter baumannii isolate TERIPS 5011 prokMSA_id:058750 AF502423 Pseudomonas aeruginosa strain DSM 1128 prokMSA_id:061800 AF531854 Acinetobacter baumannii strain TERIPS_12011 prokMSA_id:061799 AF531855 Acinetobacter baumannii strain TERIPS_13008 prokMSA_id:060403 AF535213 Acinetobacter baumannii strain TERI_18004 prokMSA_id:060404 AF535214 Acinetobacter baumannii strain TERI_18006 prokMSA_id:060402 AF535215 Acinetobacter baumannii strain TERI_18010 prokMSA_id:059425 AF540844 clone S2-1 prokMSA_id:059423 AF540845 clone S2-2 prokMSA_id:027958 AJ279497 Benzene-decomposing S14 strain S14 prokMSA_id:071821 AJ308314 Pseudomonas resinovorans isolate ICMP 13541; ATCC 14235 prokMSA_id:073332 AJ311411 maize rhizosphere c13_45 prokMSA_id:074304 AJ405040 A24-K1 clone A24-K1 prokMSA_id:028106 AJ413198 Pseudomonas sp. B1 strain B1 prokMSA_id:041985 AJ413199 Pseudomonas aeruginosa strain B2 prokMSA_id:063178 AJ496326 Pseudomonas aeruginosa prokMSA_id:062612 AJ504500 isolate P1CN32 prokMSA_id:059269 AJ508697 Pseudomonas sp. MBRG 4.7 isolate MBRG 4.7 prokMSA_id:078616 AJ536419 Pseudomonas aeruginosa isolate 3:2 567BP prokMSA_id:078712 AJ536420 Pseudomonas aeruginosa isolate 3:2 595BP prokMSA_id:096243 AJ555147 Pseudomonas aeruginosa prokMSA_id:087060 AJ564059 Pseudomonas sp. W108-1 prokMSA_id:089462 AJ565924 Pseudomonas aeruginosa isolate KC31 prokMSA_id:088863 AJ565925 Pseudomonas aeruginosa isolate HK-KC32 prokMSA_id:088346 AJ578066 Pseudomonas sp. prokMSA_id:061439 AY043794 gamma clone NMW3.108WL prokMSA_id:030896 AY055062 clone E13 prokMSA_id:027999 AY055065 clone E3 prokMSA_id:029768 AY055066 clone E7 prokMSA_id:017470 AY055070 clone S15 prokMSA_id:040483 AY055078 clone B1 prokMSA_id:034573 AY055081 clone B16 prokMSA_id:048465 AY055084 clone B23 prokMSA_id:025848 AY055773 Pseudomonas sp. EB02 prokMSA_id:050388 AY063234 Pseudomonas citronellolis strain TERIDJI prokMSA_id:037763 AY063235 Pseudomonas citronellolis strain TERIDJ2 prokMSA_id:041142 AY074894 Pseudomonas aeruginosa strain H13 prokMSA_id:037100 AY074896 Pseudomonas aeruginosa strain H157 prokMSA_id:067354 AY090561 Pseudomonas citronellolis TERIDB29 prokMSA_id:067352 AY090562 Pseudomonas citronellolis TERIDB30 prokMSA_id:067348 AY090563 Pseudomonas citronellolis TERIDB18 prokMSA_id:073177 AY090564 Pseudomonas citronellolis TERIDB19 prokMSA_id:083793 AY092369 clone BI29 prokMSA_id:063479 AY121977 Pseudomonas aeruginosa strain DA36 prokMSA_id:060701 AY125952 Pseudomonas aeruginosa ZD4-3 prokMSA_id:070731 AY126340 Pseudomonas aeruginosa strain 12/5395/3/02 prokMSA_id:091264 AY131332 Pseudomonas sp. PCP2.1 prokMSA_id:055805 AY137203 Pseudomonas sp. PCPTE3 prokMSA_id:077147 AY157125 gamma isolate HS-62 prokMSA_id:081193 AY187406 clone SA30 prokMSA_id:080286 AY193008 clone GalA83 prokMSA_id:085363 AY233299 Pseudomonas rathonis prokMSA_id:083949 AY253436 clone HC3 prokMSA_id:084034 AY256609 DGGE band B1-3 prokMSA_id:083221 AY267515 Pseudomonas sp. 4CBT prokMSA_id:084568 AY267516 Pseudomonas sp. 4CBAI4 prokMSA_id:087531 AY269191 Pseudomonas aeruginosa strain TERI 7003 prokMSA_id:087090 AY269199 Pseudomonas aeruginosa strain TERI 7014 prokMSA_id:087921 AY269203 Pseudomonas aeruginosa strain TERI 7019 prokMSA_id:087302 AY269246 Pseudomonas sp. TERI 6013 prokMSA_id:083458 AY271770 Pseudomonas sp. prokMSA_id:087687 AY274872 Pseudomonas aeruginosa strain TERI 2002 prokMSA_id:086949 AY274873 Pseudomonas aeruginosa strain TERI 2004 prokMSA_id:086753 AY274874 Pseudomonas aeruginosa strain TERI 2012 prokMSA_id:086993 AY274875 Pseudomonas aeruginosa strain TERI 2014 prokMSA_id:087820 AY274876 Pseudomonas aeruginosa strain TERI 1008 prokMSA_id:088013 AY274877 Pseudomonas aeruginosa strain TERI 10010 prokMSA_id:087023 AY274878 Pseudomonas aeruginosa strain TERI 10011 prokMSA_id:086950 AY274887 Pseudomonas aeruginosa strain TERI 8013 prokMSA_id:087346 AY278930 Pseudomonas sp. TB27 prokMSA_id:090317 AY307995 Pseudomonas sp. prokMSA_id:091948 AY337580 Pseudomonas aeruginosa CC-RS1 prokMSA_id:096507 AY394845 Pseudomonas sp. M18 prokMSA_id:008423 D11187 Pseudomonas aeruginosa IAM 1514 . prokMSA_id:070377 D84021 Pseudomonas nitroreducens prokMSA_id:008415 D84021 Pseudomonas nitroreducens IAM 1439 . prokMSA_id:008414 L40412 Pseudomonas sp. str. B13. prokMSA_id:043764 U70698 gamma OM133 prokMSA_id:008445 X86625 unnamed organism. prokMSA_id:008433 Z76668 Pseudomonas resinovorans LMG 2274 . 2.28.3.13.6 AZO.VINELANDII 3 seqs 2.28.3.13.6.001 OTU 1 seq prokMSA_id:008456 L40329 Azotobacter vinelandii str. AMOP. 2.28.3.13.6.002 OTU 1 seq prokMSA_id:043151 AF328185 clone KS38 2.28.3.13.6.999 poor quality 1 seq prokMSA_id:082794 AY092368 clone BF110 2.28.3.13.7 PS.STUTZERI_SUBGROUP 258 seqs 2.28.3.13.7.001 OTU 1 seq prokMSA_id:008513 AF159680 clone HstpL23. 2.28.3.13.7.005 OTU 1 seq prokMSA_id:008488 L37366 Pseudomonas mendocina str. KR. 2.28.3.13.7.008 OTU 1 seq prokMSA_id:016663 AF424170 gamma MERTZ_21CM_214 2.28.3.13.7.011 OTU 1 seq prokMSA_id:029864 AF333540 gamma clone R187 2.28.3.13.7.012 OTU 1 seq prokMSA_id:038203 AJ297464 verrucomicrobiales Sva0543 2.28.3.13.7.014 OTU 135 seqs prokMSA_id:008464 AB002660 str. HTA208. prokMSA_id:008458 AB004241 str. MT-1. prokMSA_id:008463 AB010854 str. HTB028. prokMSA_id:043907 AB031277 Pseudomonas sp. BT1 prokMSA_id:078598 AB088754 Pseudomonas stutzeri prokMSA_id:073224 AB095004 Pseudomonas sp. KNA6-3 prokMSA_id:071836 AB095005 Pseudomonas sp. KNA6-5 prokMSA_id:057389 AB096261 Pseudomonas stutzeri prokMSA_id:088710 AB098613 Pseudomonas stutzeri prokMSA_id:084756 AB109011 Pseudomonas stutzeri complete strain:NA1 prokMSA_id:086440 AB109012 Pseudomonas pseudoalcaligenes complete strain:NA2 prokMSA_id:008478 AF025349 Pseudomonas BRW1 str. BRW1. prokMSA_id:008479 AF025351 Pseudomonas BRW3 str. BRW3. prokMSA_id:008499 AF038653 Pseudomonas stutzeri str. WM88. prokMSA_id:008511 AF054933 Pseudomonas stutzeri str. ChG 5-3. prokMSA_id:008502 AF063219 Pseudomonas stutzeri str. KC. prokMSA_id:008510 AF064636 Pseudomonas NAP-3-1 str. NAP-3-1. prokMSA_id:008498 AF067960 Pseudomonas stutzeri str. KC. prokMSA_id:048469 AF094748 Pseudomonas stutzeri prokMSA_id:008477 AF143245 Pseudomonas stutzeri str. A1501. prokMSA_id:008485 AF152596 Pseudomonas stutzeri str. 18. prokMSA_id:008500 AF170358 Pseudomonas PK str. PK. prokMSA_id:019945 AF214645 Nitrogen-fixing MIS prokMSA_id:034252 AF229870 Pseudomonas sp. 4FB4 prokMSA_id:029169 AF229871 Pseudomonas sp. 4FB5 prokMSA_id:070426 AF229888 Pseudomonas sp. 3BB2 prokMSA_id:038888 AF237677 Pseudomonas stutzeri complete prokMSA_id:041253 AF284764 Pseudomonas stutzeri strain phen8 complete prokMSA_id:026664 AF343944 Pseudomonas sp. NBF23 prokMSA_id:071810 AF359550 Marine SCRIPPS_740 prokMSA_id:027127 AF411219 Pseudomonas stutzeri strain JJ prokMSA_id:054537 AF411853 Pseudomonas sp. 5.1 prokMSA_id:050755 AF411854 Pseudomonas sp. 5A prokMSA_id:064664 AF467293 Pseudomonas sp. clone 91_19 prokMSA_id:064654 AF467304 Pseudomonas sp. clone 349_11 prokMSA_id:066957 AF482684 Pseudomonas sp. BU prokMSA_id:077339 AF548761 Pseudomonas sp. clone SR11d28 prokMSA_id:008475 AJ006103 Pseudomonas stutzeri ATCC 17685. prokMSA_id:008483 AJ006104 Pseudomonas stutzeri ATCC 17598. prokMSA_id:008468 AJ006107 Pseudomonas stutzeri ATCC 17682. prokMSA_id:030143 AJ006108 Pseudomonas stutzeri isolate MW56 prokMSA_id:061941 AJ244723 Pseudomonas cf. stutzeri V4.BE.31 prokMSA_id:061945 AJ244724 Pseudomonas cf. stutzeri V4.MO.16 prokMSA_id:028308 AJ270451 Pseudomonas stutzeri strain 24a13 prokMSA_id:018824 AJ270452 Pseudomonas stutzeri strain 11C2 prokMSA_id:022736 AJ270453 Pseudomonas stutzeri strain 3C59 prokMSA_id:026492 AJ270454 Pseudomonas stutzeri strain 4C57 prokMSA_id:039267 AJ270455 Pseudomonas stutzeri strain 4C71 prokMSA_id:023630 AJ270456 Pseudomonas stutzeri strain 4C29 prokMSA_id:024944 AJ270457 Pseudomonas stutzeri strain 4C38 prokMSA_id:036560 AJ270458 Pseudomonas stutzeri strain 4C68 prokMSA_id:040269 AJ288147 Pseudomonas stutzeri isolate BTH 922 prokMSA_id:053166 AJ288148 Pseudomonas stutzeri isolate Makran prokMSA_id:050368 AJ288149 Pseudomonas stutzeri isolate Bok 10-D-1 prokMSA_id:038510 AJ288150 Pseudomonas stutzeri isolate Bok 25-30-1 prokMSA_id:024364 AJ288151 Pseudomonas stutzeri strain DSM 5190T prokMSA_id:037567 AJ295681 Pseudomonas stutzeri strain IrT-JG-2 prokMSA_id:032844 AJ295682 Pseudomonas stutzeri strain IrT-JG-7 prokMSA_id:076785 AJ297767 Pseudomonas stutzeri isolate HY-105 prokMSA_id:053689 AJ308315 Pseudomonas stutzeri isolate ICMP 12561; ATCC 17588 prokMSA_id:039439 AJ310484 Pseudomonas stutzeri strain pssu2 prokMSA_id:060925 AJ312156 Pseudomonas stutzeri strain 20G prokMSA_id:060923 AJ312157 Pseudomonas stutzeri strain 3C68 prokMSA_id:071276 AJ312158 Pseudomonas stutzeri strain 3C83 prokMSA_id:086885 AJ312159 Pseudomonas stutzeri strain 3C18 prokMSA_id:087959 AJ312160 Pseudomonas stutzeri strain 4C74 prokMSA_id:087681 AJ312161 Pseudomonas stutzeri strain 28a39 prokMSA_id:086919 AJ312162 Pseudomonas stutzeri strain 28a50 prokMSA_id:087260 AJ312163 Pseudomonas stutzeri strain 28a3 prokMSA_id:087706 AJ312164 Pseudomonas stutzeri strain 28a64 prokMSA_id:087104 AJ312165 Pseudomonas stutzeri strain 28a42 prokMSA_id:087730 AJ312166 Pseudomonas stutzeri strain 28a74 prokMSA_id:087996 AJ312167 Pseudomonas stutzeri strain 28a22 prokMSA_id:087782 AJ312168 Pseudomonas stutzeri strain 28a23 prokMSA_id:060921 AJ312169 Pseudomonas stutzeri strain 24a36 prokMSA_id:055955 AJ312170 Pseudomonas stutzeri strain 24a80 prokMSA_id:060922 AJ312171 Pseudomonas stutzeri strain 24a50 prokMSA_id:060920 AJ312172 Pseudomonas stutzeri strain 24a97 prokMSA_id:060919 AJ312173 Pseudomonas stutzeri strain 24a63 prokMSA_id:072822 AJ312174 Pseudomonas stutzeri strain 24a112 prokMSA_id:060917 AJ312175 Pseudomonas stutzeri strain 24a43 prokMSA_id:060916 AJ312176 Pseudomonas stutzeri strain 24a51 prokMSA_id:086823 AJ319662 Pseudomonas stutzeri strain 28a17 prokMSA_id:031433 AJ387903 Pseudomonas sp. strain -111 prokMSA_id:050348 AJ391194 Pseudomonas sp. AS-33 prokMSA_id:060915 AJ410871 Pseudomonas stutzeri strain API-2-142 prokMSA_id:056281 AJ410872 Pseudomonas stutzeri strain YPF-41 prokMSA_id:066185 AJ488079 clone IB-26 prokMSA_id:077227 AJ532695 gamma clone Gitt-KF-169 prokMSA_id:082328 AJ548920 Pseudomonas clone BIOEST-31 prokMSA_id:093653 AJ551097 Pseudomonas sp. wp17 isolate wp17 prokMSA_id:094197 AJ551129 Psychrobacter sp. es9 isolate es9 prokMSA_id:025407 AY017341 Pseudomonas chloritidismutans prokMSA_id:029740 AY030314 Pseudomonas sp. JPL-1 prokMSA_id:089042 AY125329 Pseudomonas stutzeri strain ASK-1 prokMSA_id:079341 AY187886 clone C23 prokMSA_id:079560 AY187900 clone K7 prokMSA_id:079570 AY187907 clone N3 prokMSA_id:079387 AY187914 clone U9 prokMSA_id:080144 AY189751 Pseudomonas stutzeri prokMSA_id:090274 AY191355 Pseudomonas sp. isolate ODP1176A6H_26_B prokMSA_id:081925 AY214345 Pseudomonas sp. A_wp02211 prokMSA_id:081870 AY214347 Pseudomonas sp. A_wp02223 prokMSA_id:087007 AY293865 Pseudomonas sp. NUST03 prokMSA_id:090679 AY321589 Pseudomonas stutzeri prokMSA_id:091755 AY345385 JB14 prokMSA_id:091395 AY345431 K2-20 prokMSA_id:091116 AY345461 K65 prokMSA_id:093848 AY364327 Pseudomonas stutzeri strain UP-1 prokMSA_id:094193 AY364328 Pseudomonas stutzeri strain UP-2 prokMSA_id:096146 AY382612 clone CS243 prokMSA_id:095623 AY394870 Pseudomonas sp. EPR 12 prokMSA_id:096443 AY394882 Pseudomonas sp. EPR 29 prokMSA_id:097597 AY394883 Pseudomonas sp. EPR 30 prokMSA_id:071825 D84014 Pseudomonas fragi complete prokMSA_id:008471 D84014 Pseudomonas fragi IAM 12402. prokMSA_id:008487 U22426 Pseudomonas stutzeri str. 19SMN4 DSM 6084. prokMSA_id:008509 U22427 Pseudomonas stutzeri str. AN10. prokMSA_id:008457 U25280 Pseudomonas stutzeri str. AN11. prokMSA_id:008492 U25431 Pseudomonas stutzeri str. Stanier 220 ATCC 17587. prokMSA_id:008496 U25432 Pseudomonas stutzeri str. Stanier 222 ATCC 17589. prokMSA_id:008472 U26261 Pseudomonas stutzeri str. Stanier 224 ATCC 17591. prokMSA_id:008476 U26262 Pseudomonas stutzeri str. Stanier 221 CCUG 11256 . prokMSA_id:008489 U26414 Pseudomonas stutzeri str. DNSP21 DSM 6082. prokMSA_id:008497 U26415 Pseudomonas stutzeri DSM 50227. prokMSA_id:008474 U26416 Pseudomonas stutzeri str. Stanier 419 DSM 50238. prokMSA_id:008465 U26417 Pseudomonas stutzeri str. LS401. prokMSA_id:008512 U26418 Pseudomonas balearica str. SP1402 DSM 6083 . prokMSA_id:008505 U26419 Pseudomonas stutzeri str. ST27MN3. prokMSA_id:008486 U26420 Pseudomonas stutzeri str. Zobell ATCC 14405. prokMSA_id:008460 U58661 Pseudomonas stutzeri str. JM300. prokMSA_id:008494 U65012 Pseudomonas stutzeri str. Zobell ATCC 14405. prokMSA_id:008481 X86624 unnamed organism. prokMSA_id:008459 X98607 Pseudomonas stutzeri str. JM-300 DSM 10701. prokMSA_id:008484 Y18006 Pseudomonas stutzeri. 2.28.3.13.7.015 OTU 1 seq prokMSA_id:043178 AB049750 Pseudomonas sp. Loihi-Chm-10 2.28.3.13.7.016 OTU 1 seq prokMSA_id:044798 AB049749 Pseudomonas sp. Loihi-Chm-9 2.28.3.13.7.017 OTU 1 seq prokMSA_id:048401 AJ308319 Azotobacter beijerinckii isolate ICMP 8673; ATCC 19360 2.28.3.13.7.018 OTU 1 seq prokMSA_id:049890 AB049748 Halomonas sp. Loihi-Chm-8 2.28.3.13.7.019 OTU 1 seq prokMSA_id:050597 AJ252652 Agricultural soil clone SC-I-73 2.28.3.13.7.020 OTU 1 seq prokMSA_id:051433 U70703 gamma OM252 2.28.3.13.7.021 OTU 1 seq prokMSA_id:064590 AF467386 gamma clone 1599 2.28.3.13.7.022 OTU 1 seq prokMSA_id:064596 AF467378 gamma clone 2532 2.28.3.13.7.023 OTU 1 seq prokMSA_id:064599 AF467374 gamma clone 2504 2.28.3.13.7.024 OTU 1 seq prokMSA_id:064608 AF467360 gamma clone 2534 2.28.3.13.7.025 OTU 1 seq prokMSA_id:070494 AJ240920 gamma CHAB-V-35 5' 2.28.3.13.7.026 OTU 1 seq prokMSA_id:071026 AY028398 Teredinibacter turnerae small subunit 2.28.3.13.7.027 OTU 1 seq prokMSA_id:078344 AY172304 clone 121 2.28.3.13.7.999 poor quality 105 seqs prokMSA_id:008491 AB006998 str. SLI. prokMSA_id:008461 AB022470 clone KC111. prokMSA_id:008507 AF054934 Pseudomonas stutzeri str. BG-2. prokMSA_id:008490 AF054935 Pseudomonas stutzeri str. ChG 5-2. prokMSA_id:008467 AF054936 Pseudomonas balearica str. TG-3. prokMSA_id:040150 AF107069 Pseudomonas stutzeri prokMSA_id:022337 AF107076 Pseudomonas sp. BL218-6 prokMSA_id:019358 AF107077 Pseudomonas sp. BL217-4 prokMSA_id:030020 AF170099 Pseudomonas stutzeri prokMSA_id:042072 AF229866 Pseudomonas sp. 2FB11 prokMSA_id:027767 AF229869 Pseudomonas sp. 4FB3 prokMSA_id:027095 AF229873 Pseudomonas sp. 4FB7 prokMSA_id:072449 AF229885 Pseudomonas sp. 3CB6 prokMSA_id:071958 AF229886 Pseudomonas sp. 3CB7 prokMSA_id:072681 AF286176 IAFBG4 prokMSA_id:041923 AF288713 Pseudomonas sp. HD-2000/5 prokMSA_id:039027 AF288777 Pseudomonas sp. CFPBD prokMSA_id:035066 AF307873 Pseudomonas stutzeri S1MN3 prokMSA_id:029295 AF307874 Pseudomonas balearica LS402 prokMSA_id:052000 AF307875 Pseudomonas balearica SP401 prokMSA_id:025924 AF320296 SAB reactor band 1 prokMSA_id:025381 AF321060 Pseudomonas stutzeri strain U32 prokMSA_id:016354 AF323492 Pseudomonas sp. PDA prokMSA_id:034792 AF323493 Pseudomonas sp. PDB prokMSA_id:066703 AF325152 Pseudomonas sp. AX prokMSA_id:021701 AF353684 Pseudomonas stutzeri prokMSA_id:026147 AF408912 Pseudomonas sp. C85C prokMSA_id:036505 AF408926 Pseudomonas sp. C59D prokMSA_id:023187 AF408936 Pseudomonas sp. C27C prokMSA_id:044481 AF408937 Pseudomonas sp. C27B prokMSA_id:046150 AF417913 antarctic soil clone bh4.62 prokMSA_id:061246 AF432651 clone NOW2.59WL prokMSA_id:049671 AF441871 gamma clone CD13H7 prokMSA_id:044909 AF453298 Pseudomonas sp. PsEGa prokMSA_id:039297 AF453306 Pseudomonas sp. PsEJ prokMSA_id:018699 AF453308 Pseudomonas sp. PsEL prokMSA_id:027291 AF453309 Pseudomonas sp. PsEM prokMSA_id:043795 AF453310 Pseudomonas sp. PsEN prokMSA_id:071229 AF455059 clone B5 prokMSA_id:068563 AF486717 clone E5-46-HS3I-236 prokMSA_id:068561 AF486718 clone E5-46-HS3I-237 prokMSA_id:068556 AF486727 clone E5-46-HS3I-246 prokMSA_id:068549 AF486733 clone E5-46-HS3I-252 prokMSA_id:068551 AF486734 clone E5-46-HS3I-253 prokMSA_id:068548 AF486736 clone E5-46-HS3I-255 prokMSA_id:068538 AF486746 clone E5-46-HS3I-266 prokMSA_id:068537 AF486747 clone E5-46-HS3I-267 prokMSA_id:068531 AF486753 clone E5-46-HS3I-273 prokMSA_id:068530 AF486755 clone E5-46-HS3I-275 prokMSA_id:068527 AF486757 clone E5-46-HS3I-277 prokMSA_id:056712 AF486768 clone E5-46-HS3I-288 prokMSA_id:068509 AF486778 clone E5-46-HS3I-298 prokMSA_id:056642 AF486779 clone E5-46-HS3I-299 prokMSA_id:068510 AF486780 clone E5-46-HS3I-300 prokMSA_id:068504 AF486784 clone E5-46-HS3I-304 prokMSA_id:068503 AF486788 clone E5-46-HS3I-308 prokMSA_id:068493 AF486796 clone E5-46-HS3P-321 prokMSA_id:068490 AF486798 clone E5-46-HS3P-323 prokMSA_id:055320 AF508202 clone CN MLS Band7 prokMSA_id:071775 AF530290 Pseudomonas sp. CA-11 prokMSA_id:073851 AH001784 Thiobacillus sp. NF13 prokMSA_id:008508 AJ005167 Pseudomonas stutzeri str. 19SMN4 DSM 6084. prokMSA_id:018383 AJ006008 clone TBS12 prokMSA_id:008506 AJ006105 Pseudomonas stutzeri ATCC 17595. prokMSA_id:008462 AJ006106 Pseudomonas stutzeri ATCC 17641. prokMSA_id:008503 AJ006110 Pseudomonas alcaligenes ATCC 12815. prokMSA_id:052863 AJ344226 Pseudomonas stutzeri strain TSJ5 prokMSA_id:038766 AJ387896 B4-69 clone B4-69 prokMSA_id:059214 AJ458198 Pseudomonas sp. 0sq510 prokMSA_id:064729 AJ489342 Pseudomonas sp. Lgg10.1 strain Lgg10.1 prokMSA_id:064725 AJ489344 Pseudomonas sp. Lgg10.3 strain Lgg10.3 prokMSA_id:064724 AJ489346 Pseudomonas sp. Lgg10.5 strain Lgg10.5 prokMSA_id:064722 AJ489348 Pseudomonas sp. Lgg10.7 strain Lgg10.7 prokMSA_id:087380 AJ561161 gamma clone RB_OIL 220 prokMSA_id:043114 AY006530 rumen prokMSA_id:061523 AY043690 gamma clone NOW2.84WL prokMSA_id:021792 AY055079 clone B10 prokMSA_id:044889 AY074895 Pseudomonas stutzeri strain M6 prokMSA_id:073006 AY123960 CA-13 prokMSA_id:074218 AY135478 Azorhizophilus sp. S7-27 prokMSA_id:070599 AY135483 Pseudomonas sp. CA-05 prokMSA_id:079229 AY187887 clone C37 prokMSA_id:084825 AY256613 DGGE band S4-7 prokMSA_id:084680 AY256614 DGGE band S4-19 prokMSA_id:086925 AY269866 Pseudomonas sp. 3 prokMSA_id:084665 AY271775 Pectobacterium sp. prokMSA_id:089668 AY289472 soil clone ABS-635 prokMSA_id:093791 AY297790 Pseudomonas alcaligenes prokMSA_id:091415 AY345558 clone T7-1-3B02 prokMSA_id:008473 D84024 Pseudomonas stutzeri IAM 12668. prokMSA_id:070066 D84024 Pseudomonas stutzeri prokMSA_id:008470 M59156 Flavobacterium "lutescens" ATCC 27951. prokMSA_id:008469 M79387 str. NF13. prokMSA_id:074058 M79388 Thiobacillus sp. NF13 prokMSA_id:070131 M79389 Thiobacillus sp. NF13 prokMSA_id:008504 U12214 str. B0253. prokMSA_id:008466 U43635 clone EH-10. prokMSA_id:032799 U43637 clone EH-15 prokMSA_id:008501 U58659 Pseudomonas stutzeri ATCC 11607. prokMSA_id:008482 U58660 Pseudomonas stutzeri ATCC 17684. prokMSA_id:008493 U62132 Pseudomonas WJT-1C str. WJT-1C. prokMSA_id:047769 U64001 Pseudomonas sp. SCB24 prokMSA_id:008495 X84587 str. SBR2051. prokMSA_id:008480 X86622 unnamed organism. prokMSA_id:028984 Y18235 Pseudomonas cf. putida strain CH-B107 2.28.3.13.8 PS.MENDOCINA_SUBGROUP 162 seqs 2.28.3.13.8.002 OTU 1 seq prokMSA_id:008533 AF035212 Azomonas macrocytogenes ATCC 12334. 2.28.3.13.8.003 OTU 1 seq prokMSA_id:008532 AF035211 Azotobacter chroococcum ATCC 9043. 2.28.3.13.8.005 OTU 1 seq prokMSA_id:008525 AF140011 Pseudomonas pseudoalcaligenes str. ML-A04. 2.28.3.13.8.008 OTU 3 seqs prokMSA_id:008522 AF142955 clone TAYNAYA-9. prokMSA_id:023530 AF277489 gamma SIC.42402 prokMSA_id:032391 AF277547 gamma ARCTIC.243 2.28.3.13.8.010 OTU 1 seq prokMSA_id:055384 AF425998 UNSW3 2.28.3.13.8.015 OTU 2 seqs prokMSA_id:027037 AF229864 Pseudomonas sp. 2FB9 prokMSA_id:087080 AJ312229 Pseudomonas stutzeri strain 24a75 2.28.3.13.8.018 OTU 1 seq prokMSA_id:030870 AJ308318 Azorhizophilus paspali isolate ICMP 7469; ATCC 23833 2.28.3.13.8.020 OTU 88 seqs prokMSA_id:008530 AB010850 str. HTB147. prokMSA_id:008534 AB010851 str. HTB110. prokMSA_id:008535 AB010852 str. HTB139. prokMSA_id:008536 AB010853 str. HTB095. prokMSA_id:008523 AB021376 Pseudomonas anguilliseptica NCMB 1949. prokMSA_id:033037 AB030583 Pseudomonas alcalophila prokMSA_id:039176 AB045280 Pseudomonas sp. HMD H5 prokMSA_id:057400 AB096260 Pseudomonas sp. K50 prokMSA_id:087026 AB109888 Pseudomonas pseudoalcaligenes strain: KF710 prokMSA_id:073739 AF094735 Pseudomonas oleovorans prokMSA_id:066758 AF118398 Pseudomonas sp. AST1 prokMSA_id:008528 AF139995 Pseudomonas pseudoalcaligenes str. ML-052. prokMSA_id:008527 AF140008 Pseudomonas pseudoalcaligenes str. ML-A01. prokMSA_id:008526 AF140009 Pseudomonas pseudoalcaligenes str. ML-A02. prokMSA_id:034055 AF140010 Pseudomonas pseudoalcaligenes strain ML-A03 prokMSA_id:043579 AF140012 Pseudomonas pseudoalcaligenes strain ML-A08 prokMSA_id:023182 AF140013 Pseudomonas pseudoalcaligenes strain ML-A09 prokMSA_id:073311 AF140015 Pseudomonas sp. ML-S1 prokMSA_id:032340 AF150711 Elbe River snow isolate Iso6 prokMSA_id:073478 AF181570 Pseudomonas cf. pseudoalcaligenes prokMSA_id:026691 AF232713 Pseudomonas mendocina prokMSA_id:070216 AF238494 Pseudomonas pseudoalcaligenes prokMSA_id:027396 AF277492 Pseudomonas SIC.711 prokMSA_id:022044 AF286035 Saltmarsh clone LCP-79 prokMSA_id:030052 AF321027 Pseudomonas anguilliseptica prokMSA_id:036487 AF323263 Gram negative W1G-2 prokMSA_id:034621 AF326375 Pseudomonas sp. GP11 prokMSA_id:044974 AF336311 Pseudomonas sp. SMCC D0715 prokMSA_id:063760 AF439803 Pseudomonas anguilliseptica strain BI complete prokMSA_id:067624 AF489288 Pseudomonas sp. isolate K458 prokMSA_id:067623 AF489289 Pseudomonas sp. isolate K433 prokMSA_id:067521 AF494091 Pseudomonas nitroreducens strain 0802 prokMSA_id:066624 AF500276 Pseudomonas sp. SMCC B0138 prokMSA_id:066623 AF500277 Pseudomonas sp. SMCC B0205 prokMSA_id:066619 AF500279 Pseudomonas sp. SMCC B0251 prokMSA_id:066615 AF500280 Pseudomonas sp. SMCC B0252 prokMSA_id:066618 AF500281 Pseudomonas sp. SMCC B0259 prokMSA_id:066616 AF500282 Pseudomonas sp. SMCC B0280 prokMSA_id:066759 AF500619 Pseudomonas sp. SMCC B0307 prokMSA_id:056329 AF500620 Pseudomonas sp. SMCC B0310 prokMSA_id:083705 AF539761 Pseudomonadaceae E7 prokMSA_id:008516 AJ006109 Pseudomonas mendocina ATCC 25413. prokMSA_id:008543 AJ007004 str. LE1. prokMSA_id:008544 AJ007005 str. LT1. prokMSA_id:047894 AJ272539 Pseudomonas sp. isolate O1 prokMSA_id:024184 AJ272540 Pseudomonas sp. isolate O9 prokMSA_id:038296 AJ272541 Pseudomonas sp. isolate B25 prokMSA_id:040962 AJ272542 Pseudomonas sp. isolate B5 prokMSA_id:041432 AJ272543 Pseudomonas sp. isolate B18 prokMSA_id:052352 AJ272544 Pseudomonas sp. isolate B13 prokMSA_id:051466 AJ272545 Pseudomonas sp. isolate OA146 prokMSA_id:051817 AJ272546 Pseudomonas sp. isolate BA231 prokMSA_id:023012 AJ272547 Pseudomonas sp. isolate R2 prokMSA_id:069717 AJ295645 Pseudomonas sp. KF/GS-Gitt2-53 prokMSA_id:070462 AJ308310 Pseudomonas mendocina isolate ICMP 13540; ATCC 25411 prokMSA_id:077091 AJ532693 gamma clone Gitt-KF-111 prokMSA_id:080105 AJ544239 Pseudomonas sp. DY-A prokMSA_id:083866 AJ550466 Pseudomonas alcalophila prokMSA_id:088191 AJ576116 Pseudomonas sp. clone 67 prokMSA_id:094214 AJ582197 gamma- clone Gitt-GS-123 prokMSA_id:067862 AY082368 Pseudomonas sp. clone DGG18 prokMSA_id:060878 AY135898 clone SG2-13 prokMSA_id:079494 AY187909 clone P5 prokMSA_id:079844 AY188940 Pseudomonas sp. P_wp0231 prokMSA_id:082576 AY217477 Gamma WCIF2 prokMSA_id:088699 AY221597 gamma clone HN1-14 prokMSA_id:088854 AY221605 gamma clone HN4-26 prokMSA_id:090594 AY221609 gamma clone HS9-26 prokMSA_id:084705 AY259121 Pseudomonas sp. Hsa.28 prokMSA_id:091704 AY344382 clone K2-4-13 prokMSA_id:091103 AY345382 JB17 prokMSA_id:091992 AY345468 K51 prokMSA_id:091717 AY345470 K49 prokMSA_id:096899 AY395279 VA-S-11 prokMSA_id:072702 D84016 Pseudomonas mendocina complete prokMSA_id:008515 D84016 Pseudomonas mendocina NCIMB 10541 . prokMSA_id:008529 D84022 Pseudomonas nitroreducens subsp. thermotolerans. prokMSA_id:047597 D87097 Pseudomonas stutzeri prokMSA_id:051392 D87098 Pseudomonas mendocina prokMSA_id:054136 D87099 Pseudomonas mendocina prokMSA_id:031179 D87100 Pseudomonas sp. prokMSA_id:008531 D88521 Agrobacterium agile IAM 12615. prokMSA_id:008521 X99541 Pseudomonas anguilliseptica str. 1123/5. prokMSA_id:008517 Z76664 Pseudomonas mendocina LMG 1223 . prokMSA_id:008518 Z76665 Pseudomonas oleovorans DSM 1045 . prokMSA_id:008520 Z76666 Pseudomonas pseudoalcaligenes subsp. pseudoalcaligenes LMG 1225 prokMSA_id:071894 Z76674 P.mendocina strain DSM 50017T prokMSA_id:073717 Z76675 P.pseudoalcaligenes strain DSM 50018T 2.28.3.13.8.021 OTU 1 seq prokMSA_id:044006 AF229856 Pseudomonas sp. 2FB1 2.28.3.13.8.022 OTU 3 seqs prokMSA_id:044232 AF393509 Sulfide-oxidizing N9-1 prokMSA_id:082664 AY239533 clone CARB_ESS_2 prokMSA_id:083437 AY239541 clone CARB_ESS_10 2.28.3.13.8.023 OTU 1 seq prokMSA_id:048284 AB054156 gamma HOC22 2.28.3.13.8.024 OTU 1 seq prokMSA_id:053970 AF139998 Pseudomonas sp. ML-124 2.28.3.13.8.025 OTU 1 seq prokMSA_id:056532 AJ306779 clone SHA-35 2.28.3.13.8.026 OTU 3 seqs prokMSA_id:071406 AF326380 Pseudomonas sp. PCP2 prokMSA_id:066198 AJ278107 Pseudomonas sp. strain KI prokMSA_id:066922 AJ306778 clone SHA-11 2.28.3.13.8.027 OTU 2 seqs prokMSA_id:077123 AJ519625 gamma clone Sh765B-AG-8 prokMSA_id:075837 AJ532691 gamma clone Gitt-KF-67 2.28.3.13.8.028 OTU 1 seq prokMSA_id:079311 AY187893 clone H3 2.28.3.13.8.029 OTU 1 seq prokMSA_id:080099 AF468287 clone ARKIA-103 2.28.3.13.8.030 OTU 1 seq prokMSA_id:081781 AY214348 Pseudomonas sp. A_wp02262 2.28.3.13.8.031 OTU 1 seq prokMSA_id:083506 AJ550469 Pseudomonas nitroreducens 2.28.3.13.8.032 OTU 1 seq prokMSA_id:089745 AJ576114 Pseudomonas sp. clone 36 2.28.3.13.8.033 OTU 1 seq prokMSA_id:091144 AY344383 clone K2-4-3 2.28.3.13.8.034 OTU 1 seq prokMSA_id:092482 AY354853 gamma clone PLY-P3-45 2.28.3.13.8.999 poor quality 45 seqs prokMSA_id:008524 AB021379 Pseudomonas pseudoalcaligenes subsp. pseudoalcaligenes JCM 5968. prokMSA_id:076271 AB075153 clone:TCR4 prokMSA_id:008537 AF094765 str. DU1. prokMSA_id:008538 AF094767 str. WB3. prokMSA_id:008539 AF094768 str. WA1. prokMSA_id:008540 AF094769 str. WWTP. prokMSA_id:008541 AF094770 str. SM1b. prokMSA_id:008542 AF094771 str. SM2. prokMSA_id:038361 AF106598 Pseudomonas pseudoalcaligenes prokMSA_id:020896 AF141410 gamma clone CR-FL29 prokMSA_id:019101 AF170788 gamma QSSC9L-10 prokMSA_id:048317 AF288714 gamma HD-2000/6 prokMSA_id:066702 AF325154 Pseudomonas sp. AU prokMSA_id:021279 AF332248 clone T12-5 prokMSA_id:051537 AF332259 clone C12-30 prokMSA_id:032558 AF333091 Pseudomonas sp. A28 prokMSA_id:051821 AF379031 clone EV17 prokMSA_id:047426 AF392654 clone LAG7 prokMSA_id:031238 AF453301 Pseudomonas sp. PsEGd prokMSA_id:072608 AF469108 Pseudomonas pseudoalcaligenes strain JS45 prokMSA_id:072794 AF498638 Pseudomonas mendocina isolate 4.3 prokMSA_id:083576 AJ440999 Antarctic R-8971 strain R-8971 prokMSA_id:087662 AJ561149 gamma clone ANT-AC 19 prokMSA_id:086717 AJ561151 gamma clone ANT-AC 23 prokMSA_id:090247 AJ576115 Pseudomonas sp. clone 38 prokMSA_id:067217 AY090655 Methylobacter sp. clone B6 prokMSA_id:060887 AY135882 clone SG1-106 prokMSA_id:085022 AY239534 clone CARB_ESS_3 prokMSA_id:083599 AY251214 gamma clone 1B_26 prokMSA_id:087772 AY261402 clone RFLP U37 prokMSA_id:089852 AY321973 Pseudomonas mendocina strain MF45 prokMSA_id:090066 AY321977 Pseudomonas sp. MF15 prokMSA_id:095436 AY395276 A-S-23 prokMSA_id:008514 M59154 Pseudomonas mendocina ATCC 25411 . prokMSA_id:008545 U09774 clone JAP417. prokMSA_id:008546 X84605 str. SBR2073. prokMSA_id:008547 X84635 str. SBR2111. prokMSA_id:041768 X90867 P.halodenitrificans strain 1 prokMSA_id:017036 X90868 P.halodenitrificans strain 2 prokMSA_id:008519 Z48265 Pseudomonas sp. str. BB49. prokMSA_id:025870 Z73460 species isolate Boom-7m-24 prokMSA_id:024707 Z77594 1-700 C48 prokMSA_id:035647 Z77611 2-100 C14 prokMSA_id:054461 Z77624 2-400 C2.14 prokMSA_id:039795 Z95613 2.28.3.13.9 STR.B0251_SUBGROUP 2 seqs 2.28.3.13.9.001 OTU 1 seq prokMSA_id:008549 U12217 str. B0267. 2.28.3.13.9.999 poor quality 1 seq prokMSA_id:008548 U12213 str. B0251. 2.28.3.13.10 PS.ALCALIGENES_SUBGROUP 24 seqs 2.28.3.13.10.001 OTU 1 seq prokMSA_id:008554 X99118 unnamed organism. 2.28.3.13.10.002 OTU 9 seqs prokMSA_id:072074 AF094721 Pseudomonas alcaligenes prokMSA_id:018350 AF390747 Pseudomonas alcaligenes isolate LB19 prokMSA_id:047461 AF406655 Pseudomonas alcaligenes strain A3 prokMSA_id:029115 AF406656 Pseudomonas putida strain A4 prokMSA_id:073782 AJ295234 Pseudomonas sp. nov. LH1 strain LH1 prokMSA_id:079328 AJ431228 BHI80-88 strain BHI80-88 prokMSA_id:008550 D84006 Pseudomonas alcaligenes IAM 12411 . prokMSA_id:073642 D84006 Pseudomonas alcaligenes complete prokMSA_id:008553 Z76653 Pseudomonas alcaligenes LMG 1224 . 2.28.3.13.10.003 OTU 1 seq prokMSA_id:073584 AF385547 Pseudomonas sp. oral clone AZ002 2.28.3.13.10.004 OTU 1 seq prokMSA_id:038032 D87104 Pseudomonas pseudoalcaligenes 2.28.3.13.10.005 OTU 1 seq prokMSA_id:061825 AF529335 gamma clone CLi40 2.28.3.13.10.006 OTU 1 seq prokMSA_id:064901 AY095879 gamma pT-408 2.28.3.13.10.999 poor quality 10 seqs prokMSA_id:008552 AB021380 Pseudomonas pertucinogena IFO 14163. prokMSA_id:008555 AF094766 str. NCSU1. prokMSA_id:074637 AF307870 Pseudomonas stutzeri LSMN3 prokMSA_id:072037 AF530272 Pseudomonas sp. S4-18 prokMSA_id:081312 AY187455 clone SB78 prokMSA_id:008556 Z69285 clone JA21gh. prokMSA_id:008557 Z69321 str. s17. prokMSA_id:008558 Z69323 str. s19. prokMSA_id:008559 Z69329 str. s25. prokMSA_id:008551 Z77516 str. 2-400 C2.15. 2.28.3.13.11 PS.STRAMINEA_SUBGROUP 14 seqs 2.28.3.13.11.001 OTU 1 seq prokMSA_id:008563 AF047617 clone SRang1.28. 2.28.3.13.11.003 OTU 1 seq prokMSA_id:008561 AB021419 IAM 12023. 2.28.3.13.11.005 OTU 6 seqs prokMSA_id:062345 AB060135 Pseudomonas straminea strain:IAM 1587 prokMSA_id:052398 AJ308320 Pseudomonas flavescens isolate ICMP 13539; ATCC 51555 prokMSA_id:093165 AJ581988 Pseudomonas straminea strain 3Pe1-26 prokMSA_id:008560 D84023 Pseudomonas straminea IAM 1598 . prokMSA_id:073376 D84023 Pseudomonas straminea complete prokMSA_id:008562 U01916 Pseudomonas flavescens str. B62 NCPPB 3063 . 2.28.3.13.11.006 OTU 2 seqs prokMSA_id:020714 AH010476 Pseudomonas sp. CL-2 prokMSA_id:037390 AY017063 Pseudomonas sp. CL-2 3'- 2.28.3.13.11.007 OTU 1 seq prokMSA_id:024493 AF275704 Hailaer soda lake F5 2.28.3.13.11.008 OTU 1 seq prokMSA_id:027446 AJ296560 GR-Sh1-163 c GR-Sh1-lone 2.28.3.13.11.009 OTU 1 seq prokMSA_id:066199 AJ278108 Pseudomonas sp. strain KY 2.28.3.13.11.999 poor quality 1 seq prokMSA_id:091659 AY336537 Pseudomonas sp. pfB8 2.28.3.13.12 PS.LUTEOLA_SUBGROUP 10 seqs 2.28.3.13.12.001 OTU 4 seqs prokMSA_id:025281 AF386741 Pseudomonas sp. 13BT prokMSA_id:087369 AY278245 Pseudomonas sp. XLDN4-9 prokMSA_id:008566 D84002 Pseudomonas luteola IAM 13000 . prokMSA_id:070387 D84002 Chryseomonas luteola complete 2.28.3.13.12.002 OTU 1 seq prokMSA_id:057488 AB096215 Gamma Y-134 2.28.3.13.12.999 poor quality 5 seqs prokMSA_id:025362 AJ005875 clone TRS13 prokMSA_id:084336 AY217468 gamma clone WCB76 prokMSA_id:008567 D84003 Pseudomonas luteola ATCC 43330. prokMSA_id:008565 Z48267 Pseudomonas sp. str. BB61. prokMSA_id:008564 Z48275 Pseudomonas sp. str. S1.3. 2.28.3.13.13 PS.PUTIDA_SUBGROUP 361 seqs 2.28.3.13.13.004 OTU 4 seqs prokMSA_id:008598 AB030085 Pseudomonas MBIC2027 str. MBIC2027. prokMSA_id:028224 AF299120 S17sBac13 complete prokMSA_id:075047 AJ294342 Pseudomonas sp. HY-95/2-1 isolate HY-95/2-1 prokMSA_id:091934 AY345463 K57 2.28.3.13.13.005 OTU 1 seq prokMSA_id:020471 AF388902 gamma clone GOBB3-CL324 2.28.3.13.13.008 OTU 1 seq prokMSA_id:059275 AJ508698 Pseudomonas nitroreducens isolate MBRG 4.6 2.28.3.13.13.010 OTU 1 seq prokMSA_id:025966 AF424127 gamma MERTZ_2CM_319 2.28.3.13.13.011 OTU 2 seqs prokMSA_id:026354 AF448515 Cellvibrio mixtus subsp. mixtus ACM 2601 prokMSA_id:048811 AJ289160 Cellvibrio mixtus subsp. mixtus strain ACM 2603 2.28.3.13.13.012 OTU 1 seq prokMSA_id:027805 AF224800 clone Car16fa 2.28.3.13.13.013 OTU 4 seqs prokMSA_id:047724 AJ252143 Schineria larvae strain L1/68 prokMSA_id:029893 AJ252144 Schineria larvae strain L1/57 prokMSA_id:046292 AJ252145 Schineria larvae strain L1/58 prokMSA_id:033407 AJ252146 Schineria larvae strain L2/11 2.28.3.13.13.015 OTU 5 seqs prokMSA_id:025527 AF448514 Cellvibrio fulvus NCIMB 8634 prokMSA_id:073539 AJ289163 Cellvibrio sp. R4075 prokMSA_id:030985 AJ289164 Cellvibrio sp. R4079 prokMSA_id:089552 AJ493583 Cellvibrio ostraviensis strain LMG 19434T prokMSA_id:090390 AY328792 DSSD95 2.28.3.13.13.016 OTU 1 seq prokMSA_id:032552 AJ296559 GR-Sh2-34 clone GR-Sh2-34 2.28.3.13.13.018 OTU 158 seqs prokMSA_id:008599 AB009457 Pseudomonas plecoglossicida str. FPC951. prokMSA_id:008570 AB021381 Pseudomonas fuscovaginae MAFF 301177. prokMSA_id:008571 AB021397 Pseudomonas asplenii ATCC 23835. prokMSA_id:028946 AB029257 Pseudomonas putida prokMSA_id:062351 AB060131 Pseudomonas fulva strain:AJ 2126 prokMSA_id:062352 AB060132 Pseudomonas parafulva strain:AJ 2129T prokMSA_id:062350 AB060133 Pseudomonas parafulva strain:AJ 2130 prokMSA_id:062344 AB060134 Pseudomonas fulva strain:AJ 2131 prokMSA_id:062342 AB060136 Pseudomonas fulva strain:NRIC 0180T prokMSA_id:062341 AB060137 Pseudomonas cremoricoloranta strain:IAM 1541T prokMSA_id:063977 AB087853 Pseudomonas putida prokMSA_id:083881 AB108691 Pseudomonas putida complete prokMSA_id:085824 AB109013 Pseudomonas putida complete strain:NA3 prokMSA_id:086435 AB109776 Pseudomonas putida strain:KF715 prokMSA_id:084327 AB109777 Pseudomonas putida strain:KF703 prokMSA_id:077022 AE016774 Pseudomonas putida KT2440 section 1 of 21 of the complete genome prokMSA_id:076313 AE016775 Pseudomonas putida KT2440 section 2 of 21 of the complete genome prokMSA_id:075144 AE016776 Pseudomonas putida KT2440 section 3 of 21 of the complete genome prokMSA_id:075350 AE016778 Pseudomonas putida KT2440 section 5 of 21 of the complete genome prokMSA_id:076538 AE016791 Pseudomonas putida KT2440 section 18 of 21 of the complete genome prokMSA_id:008588 AF064458 Pseudomonas monteilii str. CFML 90-60 CIP 104883 . prokMSA_id:070130 AF065166 Pseudomonas sp. PH1 prokMSA_id:008603 AF072688 Pseudomonas mosselii CIP 105259. prokMSA_id:073091 AF094736 Pseudomonas putida strain ATCC 12633 prokMSA_id:037877 AF094737 Pseudomonas putida strain ATCC 17390 prokMSA_id:025113 AF094739 Pseudomonas putida strain ATCC 17485 prokMSA_id:033137 AF094740 Pseudomonas putida strain ATCC 17494 prokMSA_id:029844 AF094741 Pseudomonas putida strain ATCC 17514 prokMSA_id:074199 AF094744 Pseudomonas putida strain ATCC 17642 prokMSA_id:053552 AF094745 Pseudomonas putida strain ATCC 11172 prokMSA_id:029172 AF094746 Pseudomonas putida strain ATCC 17453 prokMSA_id:008581 AF130950 Pseudomonas syringae str. A90. prokMSA_id:008589 AF131103 Pseudomonas putida str. MTB6. prokMSA_id:008590 AF131104 Pseudomonas putida str. MTB5. prokMSA_id:008591 AF135269 Pseudomonas SF1 str. SF1. prokMSA_id:035826 AF150701 Elbe River snow isolate Iso2 prokMSA_id:045592 AF180146 Pseudomonas putida prokMSA_id:029593 AF181576 Pseudomonas cf. monteilii prokMSA_id:070592 AF220325 O16A8 prokMSA_id:041791 AF226713 Arthrobacter siderocapsulatus complete prokMSA_id:043780 AF251334 Pseudomonas sp. SV4 prokMSA_id:037108 AF290486 sheep mite Llangefni 52 prokMSA_id:046291 AF291048 Pseudomonas putida prokMSA_id:029084 AF307864 Pseudomonas putida 5IIIASal prokMSA_id:074715 AF307865 Pseudomonas putida 3IIIA2NH prokMSA_id:045918 AF307866 Pseudomonas putida 3IA2NH prokMSA_id:039403 AF307867 Pseudomonas putida PR1MN1 prokMSA_id:074706 AF307868 Pseudomonas putida 2IDINH prokMSA_id:020326 AF309079 Pseudomonas sp. MB1 prokMSA_id:021815 AF320991 Pseudomonas gingeri prokMSA_id:046073 AF321028 Pseudomonas sp. GOBB3-105 prokMSA_id:021746 AF326383 Pseudomonas sp. ADP prokMSA_id:041475 AF375841 Pseudomonas sp. U5 prokMSA_id:035259 AF375845 Pseudomonas sp. dI14 prokMSA_id:038466 AF378011 Pseudomonas sp. ML2 prokMSA_id:042527 AF394175 Blackwater bioreactor BW32 prokMSA_id:064332 AF396071 Pseudomonas putida isolate 1 prokMSA_id:056440 AF396073 Pseudomonas putida isolate 3 prokMSA_id:064333 AF396074 Pseudomonas putida isolate 4 prokMSA_id:064334 AF396075 Pseudomonas putida isolate 5 prokMSA_id:064331 AF396076 Pseudomonas putida isolate 6 prokMSA_id:046880 AF403717 Gamma MPD-73 prokMSA_id:019722 AF403731 Gamma MPD-98 prokMSA_id:034372 AF406658 Pseudomonas putida strain A7 prokMSA_id:066816 AF430121 Pseudomonas sp. VKM B-2265 prokMSA_id:066814 AF430123 Pseudomonas sp. dcm5B prokMSA_id:066813 AF430125 Pseudomonas sp. dcm7B prokMSA_id:074409 AF434170 Pseudomonas sp. AV2A prokMSA_id:033976 AF447394 Pseudomonas putida complete prokMSA_id:064655 AF467303 Pseudomonas sp. clone burs_26 prokMSA_id:080705 AF468335 clone ARKMP-70 prokMSA_id:022000 AF469258 gamma clone 33-FL41B98 prokMSA_id:067520 AF494092 Burkholderia caryophylli strain YS13 prokMSA_id:072850 AF501336 Pseudomonas oryzihabitans strain HAMBI2374 prokMSA_id:055596 AF501341 Pseudomonas oryzihabitans strain HAMBI2388 prokMSA_id:065514 AF501349 Pseudomonas oryzihabitans strain HAMBI2397 prokMSA_id:065512 AF501350 Pseudomonas oryzihabitans strain HAMBI2396 prokMSA_id:074713 AF501362 Pseudomonas oryzihabitans strain HAMBI2386 prokMSA_id:066559 AF502594 Pseudomonas monteilii strain C11 prokMSA_id:066299 AF506040 Pseudomonas fluorescens LCSA0TU1 prokMSA_id:066297 AF506041 Pseudomonas sp. LCSAOTU3 prokMSA_id:077086 AF509330 Pseudomonas putida strain DSM 3601 prokMSA_id:076601 AF509331 Pseudomonas putida strain DSM 3602 prokMSA_id:065400 AF511433 Pseudomonas fluorescens prokMSA_id:074050 AF511436 Pseudomonas alcaligenes prokMSA_id:091631 AF532866 Pseudomonas sp. K2 prokMSA_id:059723 AF538932 Pseudomonas sp. WDL5 prokMSA_id:008592 AJ002805 str. R1. prokMSA_id:040258 AJ005873 clone TRS3 prokMSA_id:008604 AJ007006 str. LY3. prokMSA_id:046263 AJ132993 Pseudomonas putida isolate #HR9 prokMSA_id:031696 AJ132994 Pseudomonas sp. isolate H171 prokMSA_id:021578 AJ243603 Pseudomonas sp. prokMSA_id:026387 AJ243606 Pseudomonas sp. prokMSA_id:074089 AJ249825 Pseudomonas putida strain GPo1 prokMSA_id:072969 AJ271219 Pseudomonas putida strain P1 prokMSA_id:025364 AJ299216 Pseudomonas mevalonii strain M prokMSA_id:021401 AJ308311 Pseudomonas putida strain Biotype A prokMSA_id:030129 AJ308313 Pseudomonas putida strain Biotype A prokMSA_id:077586 AJ514431 clone ASG3 prokMSA_id:075843 AJ534672 gamma clone S15A-MN7 prokMSA_id:028197 AY008840 Pseudomonas sp. HMH-2000 prokMSA_id:066895 AY032725 Pseudomonas sp. HR 13 prokMSA_id:027002 AY039438 Soil S95M1 prokMSA_id:027902 AY040872 Pseudomonas sp. WBC-3 prokMSA_id:068625 AY081975 clone KRA30+04 prokMSA_id:068618 AY081984 clone KRA30+17 prokMSA_id:065557 AY095404 yard-trimming-compost clone S-33 prokMSA_id:076537 AY118112 Pseudomonas sp. BW11M1 prokMSA_id:063476 AY121981 Pseudomonas putida strain RA9 prokMSA_id:063474 AY121982 Pseudomonas putida strain RA16 prokMSA_id:060444 AY131219 Pseudomonas sp. Fa24 prokMSA_id:060441 AY131221 Pseudomonas sp. Fa27 prokMSA_id:077348 AY172510 Pseudomonas sp. QDA prokMSA_id:080291 AY198111 clone ARKMP101 prokMSA_id:091834 AY259924 Pseudomonas filiscindens ; -23S intergenic spacer complete ; and 23S prokMSA_id:087157 AY278897 Pseudomonas sp. T2-34 prokMSA_id:087630 AY278935 Pseudomonas sp. TB37 prokMSA_id:088404 AY308050 Pseudomonas putida prokMSA_id:088759 AY308056 Pseudomonas sp. AZ22R8 prokMSA_id:088940 AY315456 Pseudomonas mosselii strain CC-LNC-Pr5 prokMSA_id:089243 AY324319 Pseudomonas sp. KL28 prokMSA_id:089310 AY327816 Pseudomonas sp. KR9 prokMSA_id:098549 AY332610 Pseudomonas putida prokMSA_id:091423 AY336547 Pseudomonas sp. pfB18 prokMSA_id:092897 AY344806 Pseudomonas sp. WSCIII prokMSA_id:092126 AY359830 Pseudomonas sp. clone cEIII34 prokMSA_id:095608 AY382613 clone CS396 prokMSA_id:098066 AY395005 Pseudomonas putida prokMSA_id:097328 AY395006 Pseudomonas sp. NAB2 prokMSA_id:096890 AY395029 gamma clone NAB25 prokMSA_id:008574 D37923 Pseudomonas putida IFO 14164 . prokMSA_id:008575 D37924 Pseudomonas putida str. mt-2 JCM 6156. prokMSA_id:008576 D37925 Pseudomonas putida str. PB4. prokMSA_id:008593 D83788 Pseudomonas putida str. K23-1. prokMSA_id:008606 D84004 Flavimonas oryzihabitans str. L-1 IAM 1568 . prokMSA_id:073841 D84004 Flavimonas oryzihabitans complete prokMSA_id:074257 D84015 Pseudomonas fulva complete prokMSA_id:008605 D84015 Pseudomonas fulva IAM 1529 . prokMSA_id:008579 D84020 Pseudomonas putida IAM 1236 . prokMSA_id:073399 D84020 Pseudomonas putida complete prokMSA_id:008594 D85991 Pseudomonas putida str. A10L. prokMSA_id:008582 D85992 Pseudomonas putida ATCC 11172. prokMSA_id:008583 D85994 Pseudomonas putida ATCC 17485. prokMSA_id:008595 D85996 Pseudomonas putida str. BH. prokMSA_id:008584 D85997 Pseudomonas putida str. EST1033. prokMSA_id:008585 D85998 Pseudomonas putida IFO 14671. prokMSA_id:038621 D87102 Pseudomonas putida prokMSA_id:048348 D87107 Pseudomonas sp. prokMSA_id:030358 D87108 Pseudomonas putida prokMSA_id:008572 L28676 Pseudomonas putida str. mt-2. prokMSA_id:008573 L37365 Pseudomonas putida str. F1. prokMSA_id:008596 U70977 Pseudomonas putida str. MnB1. prokMSA_id:008602 X86623 unnamed organism. prokMSA_id:008578 X86628 unnamed organism. prokMSA_id:008577 X93997 Pseudomonas putida str. R1. prokMSA_id:008568 Z76655 Pseudomonas asplenii LMG 2137 . prokMSA_id:008580 Z76667 Pseudomonas putida DSM 291 . 2.28.3.13.13.019 OTU 1 seq prokMSA_id:040327 AF099802 Pseudomonas chlororaphis 2.28.3.13.13.020 OTU 1 seq prokMSA_id:052677 AJ289161 Cellvibrio sp. R4001 2.28.3.13.13.021 OTU 1 seq prokMSA_id:062421 AF529093 Pseudomonas sp. clone FTL201 2.28.3.13.13.022 OTU 1 seq prokMSA_id:064611 AF467356 gamma clone 1591 2.28.3.13.13.023 OTU 1 seq prokMSA_id:066791 AF500312 Pseudomonas sp. PA11 2.28.3.13.13.024 OTU 1 seq prokMSA_id:077789 AY171355 clone s62 2.28.3.13.13.025 OTU 1 seq prokMSA_id:095419 AJ585226 Pseudomonas jessenii 2.28.3.13.13.026 OTU 1 seq prokMSA_id:095477 AY386344 Marine gamma HTCC2188 2.28.3.13.13.999 poor quality 175 seqs prokMSA_id:038937 AB011757 gamma strain: G21013 prokMSA_id:008569 AB011762 str. G22041. prokMSA_id:008597 AB021409 Pseudomonas monteilii str. CFML 90-60 CIP 104883 . prokMSA_id:035560 AB040416 M1-1 prokMSA_id:021394 AB040418 E1-1 prokMSA_id:063064 AB088544 Pseudomonas sp. HSP2 prokMSA_id:088503 AB114205 Pseudomonas sp. VK58 prokMSA_id:089432 AB114206 Pseudomonas sp. VK76 prokMSA_id:020158 AF083595 Amazonian soil P25ac prokMSA_id:036952 AF126452 Pseudomonas putida isolate ISSDSL4 prokMSA_id:021768 AF126454 Pseudomonas putida isolate ISSDSL5 prokMSA_id:021567 AF143450 Aquatic RUB_R2A_A2 prokMSA_id:033883 AF143452 Aquatic PVT_Cetrimid_04 prokMSA_id:040394 AF148967 Aquatic STS_R2A_04 prokMSA_id:022713 AF175900 Aquatic RUB_NH4_6 prokMSA_id:025189 AF182028 Pseudomonas putida prokMSA_id:022458 AF210710 clone SUE6 prokMSA_id:020482 AF280953 clone JS14 prokMSA_id:043209 AF286175 IAFBG2 prokMSA_id:045598 AF288721 Pseudomonas sp. HD-2000/13 prokMSA_id:072529 AF288732 Pseudomonas oryzihabitans prokMSA_id:051012 AF296134 DMSP-degrading marine JA33 prokMSA_id:042639 AF296135 DMSP-degrading marine JA41 prokMSA_id:034091 AF296137 DMSP-degrading marine JA3 prokMSA_id:022990 AF296139 DMSP-degrading marine JA14 prokMSA_id:033940 AF296140 DMSP-degrading marine JA11 prokMSA_id:032354 AF307871 Pseudomonas sp. LSMN7 prokMSA_id:074822 AF307872 Pseudomonas sp. 8IDINH prokMSA_id:025946 AF311989 Pseudomonas syringae axB12 prokMSA_id:016344 AF322028 Pseudomonas putida prokMSA_id:026768 AF332245 clone T12-3 prokMSA_id:033532 AF353686 Pseudomonas putida strain PR-N10 prokMSA_id:067955 AF365816 clone BT60PA10BA9 prokMSA_id:052060 AF376037 Pseudomonas sp. DSY-82 prokMSA_id:036822 AF392669 clone LAD4 prokMSA_id:023131 AF393447 A2 prokMSA_id:064330 AF396072 Pseudomonas putida isolate 2 prokMSA_id:064329 AF396077 Pseudomonas putida isolate 7 prokMSA_id:020722 AF403721 Gamma MPD-80 prokMSA_id:022785 AF403732 Gamma MPD-100 prokMSA_id:021229 AF408869 Pseudomonas sp. NZTK9 prokMSA_id:051810 AF408870 Pseudomonas sp. NZTK8 prokMSA_id:044365 AF408872 Pseudomonas sp. NZTK3 prokMSA_id:044435 AF408874 Pseudomonas sp. NZCB7 prokMSA_id:018504 AF408875 Pseudomonas sp. NZCB4 prokMSA_id:017586 AF408876 Pseudomonas sp. NZCB3 prokMSA_id:074191 AF408900 Pseudomonas sp. NZCH2 prokMSA_id:018515 AF408902 Pseudomonas sp. C85A prokMSA_id:018365 AF408903 Pseudomonas sp. C14B prokMSA_id:041884 AF408904 Pseudomonas sp. C11E prokMSA_id:018816 AF408905 Pseudomonas sp. C96E prokMSA_id:043524 AF408908 Pseudomonas sp. C86C prokMSA_id:049354 AF408909 Pseudomonas sp. C86B prokMSA_id:021297 AF408910 Pseudomonas sp. C86A prokMSA_id:034123 AF408911 Pseudomonas sp. C85E prokMSA_id:038797 AF408913 Pseudomonas sp. C83D prokMSA_id:018713 AF408914 Pseudomonas sp. C83A prokMSA_id:021750 AF408918 Pseudomonas sp. C75D prokMSA_id:024964 AF408919 Pseudomonas sp. C74C prokMSA_id:074681 AF408920 Pseudomonas sp. C72A prokMSA_id:020448 AF408921 Pseudomonas sp. C71C prokMSA_id:051149 AF408922 Pseudomonas sp. C66B prokMSA_id:049216 AF408924 Pseudomonas sp. C61E prokMSA_id:022440 AF408925 Pseudomonas sp. C60D prokMSA_id:028137 AF408927 Pseudomonas sp. C54D prokMSA_id:020584 AF408928 Pseudomonas sp. C54A prokMSA_id:020841 AF408929 Pseudomonas sp. C45D prokMSA_id:028077 AF408931 Pseudomonas sp. C35B prokMSA_id:031245 AF408933 Pseudomonas sp. C32A prokMSA_id:035691 AF408934 Pseudomonas sp. C30E prokMSA_id:041781 AF408935 Pseudomonas sp. C27D prokMSA_id:033319 AF408938 Pseudomonas sp. C25B prokMSA_id:037140 AF408939 Pseudomonas sp. C22B prokMSA_id:029839 AF408940 Pseudomonas sp. C16C prokMSA_id:020569 AF429092 clone CR99-7-58 prokMSA_id:028968 AF430012 Pseudomonas sp. S15-80 prokMSA_id:018785 AF437524 clone PDSB014 prokMSA_id:017672 AF437525 clone PDSB016 prokMSA_id:032492 AF437528 clone PDSB020 prokMSA_id:032242 AF437601 clone PDSB111 prokMSA_id:074810 AF448270 clone DJAT-433 prokMSA_id:051996 AF451261 Pseudomonas sp. A76 prokMSA_id:020902 AF451263 Pseudomonas sp. E146 prokMSA_id:036502 AF451268 Pseudomonas sp. E174 prokMSA_id:044434 AF451840 Pseudomonas putida strain dA prokMSA_id:041488 AF451842 Pseudomonas putida strain dD prokMSA_id:029707 AF453302 Pseudomonas sp. PsEHa prokMSA_id:034777 AF453305 Pseudomonas sp. PsEI prokMSA_id:036722 AF453307 Pseudomonas sp. PsEK prokMSA_id:021581 AF469256 gamma clone 33-FL1B98 prokMSA_id:025156 AF469257 gamma clone 33-FL21B98 prokMSA_id:058744 AF502428 Pseudomonas putida strain WCS358R prokMSA_id:058064 AF547403 gamma clone CL-S77-290 prokMSA_id:034417 AJ006093 clone TBS30 prokMSA_id:008586 AJ007910 Arthrobacter siderocapsulatus NCIMB 11286. prokMSA_id:073033 AJ224883 Pseudomonas sp. VLB120 prokMSA_id:039147 AJ232868 clone LRE21 prokMSA_id:077817 AJ271412 Pseudomonas sp. 16 S isolate KAT1 prokMSA_id:043874 AJ276648 Pseudomonas putida strain ep1 prokMSA_id:044044 AJ276650 Pseudomonas putida strain ep3 prokMSA_id:045022 AJ279496 Benzene-decomposing S11 strain S11 prokMSA_id:030956 AJ288309 Pseudomonas putida isolate GR2 prokMSA_id:018039 AJ295398 Rape rhizosphere M9040 prokMSA_id:050762 AJ295405 Rape rhizosphere M9054 prokMSA_id:021771 AJ295436 Rape rhizosphere tsb038 prokMSA_id:016534 AJ295446 Rape rhizosphere tsb060 prokMSA_id:032277 AJ295461 Rape rhizosphere tsb092 prokMSA_id:045359 AJ310536 Pseudomonas putida isolate HN731 prokMSA_id:042455 AJ314684 clone sl2118 prokMSA_id:048713 AJ405025 A11-K2 clone A11-K2 prokMSA_id:059124 AJ440499 Pseudomonas sp. BA2.3 isolate BA2.3 prokMSA_id:073447 AJ440506 Pseudomonas sp. BH12.3 isolate BH12.3 prokMSA_id:078657 AJ534863 Pseudomonas sp. DW115 isolate DW115 prokMSA_id:078483 AJ534869 Pseudomonas sp. DW90 isolate DW90 prokMSA_id:080920 AJ539228 Pseudomonas sp. 010993827 strain 0109 93827 prokMSA_id:088536 AJ550275 Pseudomonas putida isolate TK20 prokMSA_id:089128 AJ550281 Pseudomonas putida isolate TK38 prokMSA_id:086935 AJ561124 gamma clone ANT-RB 42 prokMSA_id:087047 AJ561133 gamma clone ANT-RB 59 prokMSA_id:087870 AJ561138 gamma clone ANT-RB 53 prokMSA_id:089496 AJ577093 Pseudomonas sp. clone 68 prokMSA_id:094034 AJ581637 gamma clone SB9 prokMSA_id:098288 AJ583805 Pseudomonas sp. clone DGGE band 16 prokMSA_id:056841 AX537359 2 from Patent EP1241247 prokMSA_id:079188 AX590179 2 from Patent WO02072795 prokMSA_id:025393 AY038372 gamma clone CD3B12 prokMSA_id:047858 AY039435 Soil S86D2 prokMSA_id:039477 AY039440 Earthworm cast C27D1 prokMSA_id:026914 AY039827 Pseudomonas putida strain jshsH12 prokMSA_id:034514 AY039830 Pseudomonas putida strain jshsH1 prokMSA_id:061532 AY043683 gamma clone NOW2.13WL prokMSA_id:060358 AY081748 Pseudomonas sp. clone Pseud1a prokMSA_id:060356 AY081754 Pseudomonas sp. clone Pseud3a prokMSA_id:060354 AY081758 Pseudomonas sp. clone Pseud3e prokMSA_id:086006 AY092365 clone BI140 prokMSA_id:085202 AY092366 clone BI32 prokMSA_id:082543 AY092367 clone BI44 prokMSA_id:064913 AY095868 gamma pT-209 prokMSA_id:063477 AY121980 Pseudomonas putida strain RA2 prokMSA_id:071968 AY144238 gamma clone LTUG00856 prokMSA_id:073106 AY144260 gamma clone LTUG08856 prokMSA_id:076262 AY154499 earthworm intestine clone ew04 prokMSA_id:077323 AY170458 Pseudomonas putida isolate AQ22 prokMSA_id:077349 AY170461 Pseudomonas putida isolate AQ34 prokMSA_id:079921 AY190150 Pseudomonas alcaligenes prokMSA_id:085935 AY224514 Pseudomonas sp. prokMSA_id:083688 AY226268 gamma clone BBBB-82 prokMSA_id:086025 AY233304 Pseudomonas batumici prokMSA_id:086673 AY254572 Pseudomonas sp. B2 prokMSA_id:083768 AY267508 Pseudomonas sp. 4CBAI5 prokMSA_id:086111 AY267509 Pseudomonas sp. 4CBAJ prokMSA_id:086294 AY267510 Pseudomonas sp. 4CBAJ3 prokMSA_id:086693 AY267511 Pseudomonas sp. 3CBAF prokMSA_id:085681 AY267512 Pseudomonas sp. 4CBE prokMSA_id:083533 AY267513 Pseudomonas sp. 4CBAG4 prokMSA_id:087813 AY269195 Pseudomonas alcaligenes strain TERI 7009 prokMSA_id:087554 AY269224 Pseudomonas sp. TERI 1014 prokMSA_id:087541 AY269255 Pseudomonas alcaligenes strain TERI 7031 prokMSA_id:087598 AY269867 Pseudomonas sp. 4 prokMSA_id:083191 AY271769 Pseudomonas sp. prokMSA_id:086215 AY275480 Pseudomonas sp. MSB2083 prokMSA_id:086759 AY278898 Pseudomonas sp. T2-35 prokMSA_id:087402 AY278936 Pseudomonas sp. TB38 prokMSA_id:093268 AY297786 Pseudomonas nitroreducens prokMSA_id:089080 AY308058 Pseudomonas sp. AZ18R4 prokMSA_id:089567 AY312988 Pseudomonas sp. FA1 prokMSA_id:091256 AY337588 Pseudomonas cf. monteilii CC-LNC-Pr4 prokMSA_id:094212 AY357992 beta cEV57 prokMSA_id:093426 AY364068 Pseudomonas sp. clone cRI31d prokMSA_id:021046 U63645 Pseudomonas F4 prokMSA_id:046474 U65964 Pseudomonas sp. spanning the V3-V4 region prokMSA_id:008587 U71007 Pseudomonas putida str. B2/1. prokMSA_id:023364 U78946 gamma prokMSA_id:008600 Z36533 Pseudomonas putida str. isolate Env 2.9. prokMSA_id:008601 Z36547 Pseudomonas putida str. Isolate Env 2.9. 2.28.3.13.14 PSEUDOMONAS_SUBGROUP 1358 seqs 2.28.3.13.14.1 PS.AMYGDALI_SUBGROUP 478 seqs 2.28.3.13.14.1.006 OTU 17 seqs prokMSA_id:008643 AF001651 clone OCS5. prokMSA_id:045850 AF173975 OCS5 prokMSA_id:045445 AF195460 gamma kpj278f prokMSA_id:033605 AF241654 gamma KTc1112 prokMSA_id:054017 AF268217 EBAC27G05 and 23S genes prokMSA_id:040069 AF354613 gamma Arctic97A-18 prokMSA_id:031920 AF388903 gamma clone GOBB3-CL214 prokMSA_id:048499 AF469278 gamma clone 33-FL10B99 prokMSA_id:069857 AJ240912 gamma CHAB-III-1 5' prokMSA_id:019508 AJ400344 marine ZD0107 prokMSA_id:053597 AY033328 gamma MB12G02 and 23S genes prokMSA_id:092281 AY354845 gamma clone PLY-P2-62 prokMSA_id:092155 AY354849 gamma clone PLY-P3-85 prokMSA_id:094195 AY360515 clone BSBa2-20/40m prokMSA_id:093204 AY360521 clone BSBd9-20/40m prokMSA_id:094272 AY360523 clone BSBf2-20/40m prokMSA_id:017158 U70694 gamma OM23 2.28.3.13.14.1.009 OTU 1 seq prokMSA_id:008635 AF006506 Pseudomonas pseudomonad ps.14. 2.28.3.13.14.1.013 OTU 232 seqs prokMSA_id:047854 AB001439 Pseudomonas syringae pv. actinidiae prokMSA_id:051921 AB001440 Pseudomonas syringae pv. atropurpurea prokMSA_id:020629 AB001441 Pseudomonas syringae pv. broussonetiae prokMSA_id:043799 AB001442 Pseudomonas syringae pv. eriobotryae prokMSA_id:043042 AB001443 Pseudomonas syringae pv. glycinea prokMSA_id:050673 AB001444 Pseudomonas syringae pv. maculicola prokMSA_id:050962 AB001445 Pseudomonas syringae pv. morsprunorum prokMSA_id:042258 AB001446 Pseudomonas syringae pv. mori prokMSA_id:045704 AB001447 Pseudomonas syringae pv. myricae prokMSA_id:016541 AB001448 Pseudomonas syringae pv. phaseolicola prokMSA_id:052123 AB001449 Pseudomonas syringae pv. tagetis prokMSA_id:031850 AB001450 Pseudomonas syringae pv. theae prokMSA_id:058402 AB008001 Pseudomonas putida prokMSA_id:008629 AB015547 str. BD3-1. prokMSA_id:008658 AB021382 Pseudomonas meliae MAFF 301463. prokMSA_id:008638 AB021398 Pseudomonas cichorii str. PC 1 ATCC 10857. prokMSA_id:008648 AB021402 Pseudomonas syringae ATCC 13522. prokMSA_id:047594 AB038136 Pseudomonas putida strain:P-2 prokMSA_id:030768 AB038140 Pseudomonas putida strain:P-5 prokMSA_id:016562 AB051692 Pseudomonas sp. LAB-05 prokMSA_id:052556 AB051693 Pseudomonas sp. LAB-06 prokMSA_id:043226 AB051694 Pseudomonas sp. LAB-08 prokMSA_id:031247 AB051696 Pseudomonas sp. LAB-18 prokMSA_id:019279 AB051697 Pseudomonas sp. LAB-20 prokMSA_id:052364 AB051700 Pseudomonas sp. LAB-26 prokMSA_id:046435 AB051701 Pseudomonas sp. LAB-27 prokMSA_id:040738 AB051702 Pseudomonas sp. LAB-36 prokMSA_id:020452 AB074715 Gamma S-C 3-8 prokMSA_id:082755 AB109218 Pseudomonas syringae pv. pisi prokMSA_id:081803 AE016858 Pseudomonas syringae pv. tomato str. DC3000 section 3 of 21 of the complete genome prokMSA_id:081536 AE016859 Pseudomonas syringae pv. tomato str. DC3000 section 4 of 21 of the complete genome prokMSA_id:082460 AE016868 Pseudomonas syringae pv. tomato str. DC3000 section 13 of 21 of the complete genome prokMSA_id:081086 AE016875 Pseudomonas syringae pv. tomato str. DC3000 section 20 of 21 of the complete genome prokMSA_id:008656 AF006504 Pseudomonas pseudomonad ps.15. prokMSA_id:008653 AF058286 Pseudomonas mandelii CIP 105273. prokMSA_id:008625 AF068259 Pseudomonas jessenii CIP 105274. prokMSA_id:008628 AF074383 Pseudomonas migulae CIP 105470. prokMSA_id:071021 AF094726 Pseudomonas fluorescens strain ATCC 17386 prokMSA_id:072976 AF094742 Pseudomonas putida strain ATCC 17522 prokMSA_id:039854 AF094743 Pseudomonas putida strain ATCC 17527 prokMSA_id:074008 AF094747 Pseudomonas putida strain ATCC 17536 prokMSA_id:035650 AF094749 Pseudomonas syringae prokMSA_id:070959 AF094751 Pseudomonas viridiflava prokMSA_id:008621 AF095892 Pseudomonas putida ATCC 11250. prokMSA_id:008622 AF100321 Pseudomonas brassicacearum str. DBK11 CFBP 11706. prokMSA_id:008618 AF105379 Pseudomonas PsA str. PsA. prokMSA_id:008617 AF105380 Pseudomonas PsB str. PsB. prokMSA_id:008616 AF105382 Pseudomonas PsD str. PsD. prokMSA_id:008615 AF105383 Pseudomonas PsE str. PsE. prokMSA_id:008614 AF105385 Pseudomonas PsG str. PsG. prokMSA_id:008613 AF105388 Pseudomonas PsJ str. PsJ. prokMSA_id:008612 AF105389 Pseudomonas PsK str. PsK. prokMSA_id:008640 AF105390 Pseudomonas syringae str. 010297. prokMSA_id:050073 AF124498 Pseudomonas fluorescens prokMSA_id:074758 AF126101 Pseudomonas sp. 3-1 prokMSA_id:032006 AF150717 Elbe River snow isolate IsoE1 prokMSA_id:008645 AF177919 Pseudomonas IpA-93 str. IpA-93. prokMSA_id:008651 AF184218 Pseudomonas 7/22 str. 7/22. prokMSA_id:008652 AF184219 Pseudomonas Ant9 str. Ant9. prokMSA_id:031531 AF184220 Pseudomonas sp. Ant5 prokMSA_id:072336 AF191224 Pseudomonas jessenii prokMSA_id:008641 AF195877 Pseudomonas J1 str. J1. prokMSA_id:052524 AF205135 Pseudomonas sp. 'FSL D1-024' prokMSA_id:036542 AF205136 Pseudomonas sp. 'FSL D1-045' prokMSA_id:016611 AF251333 Pseudomonas sp. SV3 prokMSA_id:032104 AF251335 Pseudomonas sp. SV5 prokMSA_id:019059 AF251336 Pseudomonas sp. SV16 prokMSA_id:070054 AF326374 Pseudomonas sp. GB13 prokMSA_id:032572 AF326376 Pseudomonas sp. ISO1 prokMSA_id:039172 AF326377 Pseudomonas sp. ISO6 prokMSA_id:041675 AF326379 Pseudomonas syringae prokMSA_id:042677 AF326381 Pseudomonas sp. PCP prokMSA_id:056604 AF364097 Pseudomonas viridiflava strain NZCX09 prokMSA_id:055485 AF368760 Pseudomonas sp. OPS1 prokMSA_id:048047 AF388207 Pseudomonas sp. NZ099 prokMSA_id:047846 AF403719 Gamma MPD-77 prokMSA_id:036132 AF403729 Gamma MPD-96 prokMSA_id:042525 AF424155 Pseudomonas sp. MERTZ_0CM_332 prokMSA_id:048578 AF438148 Pseudomonas sp. AMSN prokMSA_id:031959 AF448037 Pseudomonas sp. SCD-14b prokMSA_id:077402 AF456216 Pseudomonas sp. GS49 prokMSA_id:077373 AF456217 Pseudomonas sp. GS61 prokMSA_id:077337 AF456219 Pseudomonas sp. S55-6 prokMSA_id:077405 AF456220 Pseudomonas sp. S57-2 prokMSA_id:077368 AF456221 Pseudomonas sp. GS75 prokMSA_id:077482 AF456223 Pseudomonas sp. S67-3 prokMSA_id:077396 AF456224 Pseudomonas sp. 28R14a prokMSA_id:077463 AF456227 Pseudomonas sp. 34t20 prokMSA_id:077522 AF456230 Pseudomonas sp. S23-1 prokMSA_id:077380 AF456231 Pseudomonas sp. S23-11 prokMSA_id:080713 AF468447 Arctic sea ice ARK9995 prokMSA_id:079524 AF468450 Pseudomonas sp. Ps 3-10 prokMSA_id:079193 AF468451 Pseudomonas sp. Ps 1-2 prokMSA_id:079231 AF468452 Pseudomonas sp. Ps 9-14 prokMSA_id:079267 AF468453 Pseudomonas sp. Ps 3-1 prokMSA_id:068721 AF479386 clone pG500K-86 prokMSA_id:066757 AF500621 Pseudomonas sp. SMCC B0361 prokMSA_id:065505 AF501361 Pseudomonas jessenii strain HAMBI2391 prokMSA_id:066755 AF501877 Pseudomonas sp. SMCC B0608 prokMSA_id:066753 AF501878 Pseudomonas sp. SMCC B0628 prokMSA_id:056231 AF501879 Pseudomonas sp. SMCC B0631 prokMSA_id:066298 AF506039 Pseudomonas fluorescens LCSA0TU2 prokMSA_id:066228 AF509334 Pseudomonas sp. HS21 prokMSA_id:065399 AF511508 Pseudomonas sp. SaO3 prokMSA_id:065395 AF511509 Pseudomonas sp. SaU6sm prokMSA_id:065396 AF511510 Pseudomonas sp. SaU7 prokMSA_id:065394 AF511511 Pseudomonas syringae prokMSA_id:058732 AF521651 Pseudomonas sp. 7-1 prokMSA_id:062425 AF529090 Pseudomonas sp. clone FTL216 prokMSA_id:062407 AF529107 gamma clone FTL244 prokMSA_id:061845 AF529319 gamma clone CLi21 prokMSA_id:055717 AF529342 gamma clone CLi75 prokMSA_id:060343 AF534197 clone Glu3 prokMSA_id:060342 AF534198 clone Glu41 prokMSA_id:060339 AF534202 clone Nap14 prokMSA_id:060336 AF534205 clone Phe10 prokMSA_id:060331 AF534209 clone Phe13 prokMSA_id:060329 AF534212 clone Phe41 prokMSA_id:060327 AF534214 clone Phe56 prokMSA_id:060326 AF534216 clone Phe67 prokMSA_id:008642 AJ002813 str. S2. prokMSA_id:042404 AJ011331 Pseudomonas fluorescens isolate HM29 prokMSA_id:008626 AJ011507 str. DhA-51. prokMSA_id:029949 AJ278812 Pseudomonas fluorescens strain CHA0 prokMSA_id:070399 AJ288142 Pseudomonas sp. isolate Ki-723 prokMSA_id:073072 AJ288144 Pseudomonas sp. isolate Ki-1w prokMSA_id:040716 AJ288145 Pseudomonas sp. isolate SK-1-3-4 prokMSA_id:033035 AJ292672 WD259 clone WD259 prokMSA_id:036804 AJ295357 Rape rhizosphere cse024 prokMSA_id:033787 AJ297353 Pseudomonas sp. strain FAIR/BE/F/GH37 prokMSA_id:070736 AJ297354 Pseudomonas sp. strain FAIR/BE/F/GH39 prokMSA_id:070197 AJ308301 Pseudomonas chlororaphis isolate ICMP 13613; ATCC 9446 prokMSA_id:030292 AJ308302 Pseudomonas cichorii isolate ICMP 5707; ATCC 10857 prokMSA_id:037605 AJ308306 Pseudomonas fluorescens strain Biotype F prokMSA_id:072079 AJ308316 Pseudomonas syringae isolate ICMP 3023; ATCC 19310 prokMSA_id:070120 AJ319025 Pseudomonas sp. MT5 strain MT5 prokMSA_id:055445 AJ319575 gamma clone Thailand-6-QC prokMSA_id:023945 AJ417071 Pseudomonas sp. PGNR1 strain PGNR1 prokMSA_id:051887 AJ417073 Pseudomonas sp. PF strain PF prokMSA_id:085385 AJ441004 Antarctic R-9113 strain R-9113 prokMSA_id:063918 AJ492826 Pseudomonas tremae strain CFBP 6111T prokMSA_id:063919 AJ492827 Pseudomonas cannabina strain CFBP 2341T prokMSA_id:063915 AJ492828 Pseudomonas congelans strain DSM 14939T prokMSA_id:078215 AJ514442 clone AS1o3 prokMSA_id:075648 AJ518788 gamma clone JG37-AG-143 prokMSA_id:075209 AJ519791 Pseudomonas sp. AC-167 prokMSA_id:093278 AJ551146 Pseudomonas sp. An7 isolate An7 prokMSA_id:093358 AJ551153 Pseudomonas sp. An15 isolate An15 prokMSA_id:094000 AJ551160 Pseudomonas sp. An22 isolate An22 prokMSA_id:093608 AJ551161 Pseudomonas sp. An23 isolate An23 prokMSA_id:095371 AJ575718 gamma clone NE79 prokMSA_id:093323 AJ581956 Pseudomonas migulae strain 2Re3-13 prokMSA_id:040116 AY014803 Pseudomonas sp. NZ011 prokMSA_id:019470 AY014805 Pseudomonas sp. NZ017 prokMSA_id:051775 AY014808 Pseudomonas sp. NZ039 prokMSA_id:023411 AY014817 Pseudomonas sp. NZ096 prokMSA_id:044937 AY014818 Pseudomonas sp. NZ097 prokMSA_id:040472 AY014819 Pseudomonas sp. NZ101 prokMSA_id:031990 AY014820 Pseudomonas sp. NZ102 prokMSA_id:069922 AY014821 Pseudomonas sp. NZ103 prokMSA_id:070256 AY014822 Pseudomonas sp. NZ104 prokMSA_id:024541 AY029759 Pseudomonas sp. SMCC B0333 prokMSA_id:019234 AY037742 earthworm cast clone C140 prokMSA_id:024927 AY039828 Pseudomonas mandelii strain jshsH4 prokMSA_id:017462 AY047218 Pseudomonas migulae prokMSA_id:038918 AY048886 Q3-6C19 prokMSA_id:067339 AY089990 Pseudomonas sp. HhSoUsc prokMSA_id:060447 AY131214 Pseudomonas sp. Fa2 prokMSA_id:059189 AY136082 Pseudomonas pavonanceae prokMSA_id:076568 AY154539 earthworm intestine clone lw18 prokMSA_id:076195 AY154550 earthworm intestine clone lw53 prokMSA_id:076192 AY154552 earthworm intestine clone lw56 prokMSA_id:075962 AY162140 Pseudomonas sp. STB17 prokMSA_id:076514 AY162141 Pseudomonas sp. BHP7-11 prokMSA_id:075129 AY167969 Swine manure 37-8 prokMSA_id:078891 AY177775 Pseudomonas sp. isolate 6i70 prokMSA_id:078913 AY177776 Pseudomonas sp. isolate 5g17 prokMSA_id:078991 AY177777 Pseudomonas sp. isolate 4f57 prokMSA_id:081754 AY179326 Pseudomonas mandelii prokMSA_id:078774 AY180967 Pseudomonas viridiflava strain LPPA 139 prokMSA_id:078525 AY180968 Pseudomonas viridiflava strain LPPA 144 prokMSA_id:078951 AY180971 Pseudomonas viridiflava strain LPPA 84 prokMSA_id:078852 AY180972 Pseudomonas viridiflava strain CECT 458 prokMSA_id:081594 AY196702 Pseudomonas fluorescens strain MM-B16 prokMSA_id:082206 AY206685 Pseudomonas jessenii strain PS06 complete prokMSA_id:081650 AY206867 clone uvs_af11 prokMSA_id:088607 AY221603 soil clone HN4-2 prokMSA_id:083526 AY247063 Pseudomonas sp. AEBL3 prokMSA_id:084597 AY263468 Pseudomonas sp. BG2dil prokMSA_id:085813 AY263469 Pseudomonas sp. WG7#1 prokMSA_id:085772 AY263470 Pseudomonas sp. WG22#2 prokMSA_id:084130 AY263472 Pseudomonas sp. BE3dil prokMSA_id:084747 AY263474 Pseudomonas sp. WE7#1b prokMSA_id:083659 AY263478 Pseudomonas sp. SE22#2 prokMSA_id:083528 AY263481 Pseudomonas sp. 4/11GCS3#e prokMSA_id:085041 AY263482 Pseudomonas sp. '11/20CMC control' prokMSA_id:084758 AY263483 Pseudomonas sp. 4/11SKenr22# prokMSA_id:083005 AY263484 Pseudomonas sp. '4/27CMC A2' prokMSA_id:083026 AY267367 Pseudomonas sp. BTs10022 prokMSA_id:089326 AY308047 Pseudomonas sp. AZ22L4 prokMSA_id:088809 AY308048 Pseudomonas sp. AZ22L5 prokMSA_id:091453 AY336541 Pseudomonas sp. pfB12 prokMSA_id:091673 AY337597 Pseudomonas sp. HF3/S21027 prokMSA_id:091493 AY345529 W4b prokMSA_id:091566 AY345530 W5 prokMSA_id:093943 AY364087 Pseudomonas sp. 'ARDRA PS3' prokMSA_id:095181 AY391278 Pseudomonas putida strain AJ prokMSA_id:097515 AY395028 gamma clone NAB24 prokMSA_id:095635 AY395030 gamma clone NAB26 prokMSA_id:060549 BD061467 Polyhydroxyalkanoate synthase and encoding the enzyme prokMSA_id:008631 D84007 Pseudomonas amygdali ATCC 33614 . prokMSA_id:072307 D84007 Pseudomonas amygdali prokMSA_id:008611 D84010 Pseudomonas caricapapayae ATCC 33615 . prokMSA_id:069781 D84010 Pseudomonas caricapapayae prokMSA_id:072657 D84012 Pseudomonas corrugata prokMSA_id:008620 D84012 Pseudomonas corrugata ATCC 29736 . prokMSA_id:008654 D84019 IAM 1155. prokMSA_id:071501 D84026 Pseudomonas syringae prokMSA_id:008662 D84026 Pseudomonas syringae subsp. syringae str. pathovar reference prokMSA_id:082411 NC_004578 Pseudomonas syringae pv. tomato str. DC3000 complete genome prokMSA_id:008644 U49384 Pseudomonas avellanae str. P90. prokMSA_id:008646 U81870 str. BI*7. prokMSA_id:008619 U81871 str. BI*8. prokMSA_id:008655 X95745 Pseudomonas avellanae str. P90. prokMSA_id:008623 X96788 str. IpA-2. prokMSA_id:008754 X99676 Pseudomonas sp. Y1000 prokMSA_id:008607 Z76654 Pseudomonas amygdali LMG 2123 . prokMSA_id:008657 Z76657 Pseudomonas chlororaphis LMG 5004 . prokMSA_id:008637 Z76658 Pseudomonas cichorii str. PC 1 LMG 2162 . prokMSA_id:008659 Z76660 Pseudomonas coronafaciens LMG 13190. prokMSA_id:008639 Z76669 Pseudomonas syringae subsp. syringae str. pathovar reference prokMSA_id:008633 Z76671 Pseudomonas viridiflava LMG 2352 . 2.28.3.13.14.1.014 OTU 1 seq prokMSA_id:017498 AJ296580 Pseudomonas migulae isolate TzT-JG2-3 2.28.3.13.14.1.015 OTU 1 seq prokMSA_id:022401 AJ296561 GR-Sh1-136 clone GR-Sh1-136 2.28.3.13.14.1.016 OTU 1 seq prokMSA_id:022832 AF321023 Pseudomonas putida 2.28.3.13.14.1.017 OTU 1 seq prokMSA_id:022889 AJ318148 alpha clone BIji17 2.28.3.13.14.1.018 OTU 1 seq prokMSA_id:024053 AF333539 gamma clone R58 2.28.3.13.14.1.019 OTU 1 seq prokMSA_id:024308 AB052969 Pseudomonas sp. PE2 2.28.3.13.14.1.020 OTU 1 seq prokMSA_id:025543 AF332355 clone T12-4 2.28.3.13.14.1.021 OTU 1 seq prokMSA_id:055465 AJ456962 Gamma GPl-9 isolate GPl-9 2.28.3.13.14.1.022 OTU 1 seq prokMSA_id:027856 AF424102 gamma MERTZ_2CM_218 2.28.3.13.14.1.023 OTU 3 seqs prokMSA_id:030796 AF440709 gamma ARCT1-23 prokMSA_id:046675 AF440717 gamma ARCT1-41 prokMSA_id:050734 AJ400356 marine ZD0433 2.28.3.13.14.1.024 OTU 1 seq prokMSA_id:030992 AF448513 Cellvibrio vulgaris NCIMB 8633 2.28.3.13.14.1.025 OTU 3 seqs prokMSA_id:031704 AJ315452 marine isolate LQ-2001 prokMSA_id:062941 AY130994 Leella ganghwensis strain JC2044 prokMSA_id:070229 AY130995 Leella ganghwensis strain JC2045 2.28.3.13.14.1.026 OTU 3 seqs prokMSA_id:034670 AB054155 gamma HOC21 prokMSA_id:035099 AB054159 gamma HOC25 prokMSA_id:054855 AB054168 gamma HOC34 2.28.3.13.14.1.027 OTU 1 seq prokMSA_id:055882 AY133411 clone OB3_138 2.28.3.13.14.1.028 OTU 1 seq prokMSA_id:035948 AF313496 NWCu007 2.28.3.13.14.1.029 OTU 1 seq prokMSA_id:036080 AF424109 gamma MERTZ_2CM_255 2.28.3.13.14.1.030 OTU 1 seq prokMSA_id:037630 AF424108 gamma MERTZ_2CM_253 2.28.3.13.14.1.031 OTU 1 seq prokMSA_id:037705 AF354605 gamma Arctic96BD-1 2.28.3.13.14.1.032 OTU 1 seq prokMSA_id:040180 AF321026 Pseudomonas migulae 2.28.3.13.14.1.033 OTU 1 seq prokMSA_id:042604 AJ306686 gamma strain NS0214 2.28.3.13.14.1.034 OTU 1 seq prokMSA_id:047916 AJ292673 WD260 clone WD260 2.28.3.13.14.1.035 OTU 1 seq prokMSA_id:049000 AF393453 A10 2.28.3.13.14.1.036 OTU 1 seq prokMSA_id:050903 AF393452 A7 2.28.3.13.14.1.037 OTU 1 seq prokMSA_id:060346 AF534194 clone Caf26 2.28.3.13.14.1.038 OTU 1 seq prokMSA_id:065567 AY095394 yard-trimming-compost clone S-23 2.28.3.13.14.1.039 OTU 1 seq prokMSA_id:067771 AF420370 isolate C1_B045 2.28.3.13.14.1.040 OTU 1 seq prokMSA_id:067844 AY082463 gamma clone 44a-B1-30 2.28.3.13.14.1.041 OTU 1 seq prokMSA_id:068851 AF354612 gamma Arctic97A-6 2.28.3.13.14.1.042 OTU 1 seq prokMSA_id:071511 AF006505 pseudomonad ps.4 2.28.3.13.14.1.043 OTU 1 seq prokMSA_id:076061 AJ534624 clone JG36-TzT-56 2.28.3.13.14.1.044 OTU 1 seq prokMSA_id:076301 AJ518787 gamma clone JG37-AG-122 2.28.3.13.14.1.045 OTU 1 seq prokMSA_id:079355 AF382137 clone ZA3412c 2.28.3.13.14.1.046 OTU 1 seq prokMSA_id:080627 AF468334 clone ARKMP-100 2.28.3.13.14.1.047 OTU 1 seq prokMSA_id:081842 AF110275 Beggiatoa sp. AA5A 2.28.3.13.14.1.048 OTU 1 seq prokMSA_id:089393 AY277555 Pseudomonas sp. 2.28.3.13.14.1.049 OTU 1 seq prokMSA_id:090682 AY308060 Pseudomonas sp. AZ18L3 2.28.3.13.14.1.050 OTU 1 seq prokMSA_id:091272 AY344367 clone K2-30-25 2.28.3.13.14.1.051 OTU 1 seq prokMSA_id:093160 AY359840 Pseudomonas sp. clone cEIII49 2.28.3.13.14.1.052 OTU 1 seq prokMSA_id:095935 AY375097 clone C55 2.28.3.13.14.1.053 OTU 1 seq prokMSA_id:097698 AY375152 clone D90 2.28.3.13.14.1.054 OTU 1 seq prokMSA_id:098142 AY425758 Pseudomonas sp. FAP10 2.28.3.13.14.1.999 poor quality 181 seqs prokMSA_id:049503 AB011758 gamma strain: G21032 prokMSA_id:030911 AB011759 gamma strain: G22021 prokMSA_id:047195 AB011761 gamma strain: G22033 prokMSA_id:040811 AB013402 Pseudomonas sp. KL14 prokMSA_id:040403 AB013426 Pseudomonas sp. ML1 prokMSA_id:008647 AB021378 Pseudomonas ficuserectae JCM 2400. prokMSA_id:052786 AB041304 ECS34 prokMSA_id:075934 AB075074 clone:KCR2 prokMSA_id:077129 AB075077 clone:KCR6 prokMSA_id:075816 AB075190 clone:TSR10 prokMSA_id:076447 AB075193 clone:TSR15 prokMSA_id:083264 AB106912 Gamma 0-4 prokMSA_id:084237 AB106913 Gamma 0-5 prokMSA_id:042577 AF010020 prokMSA_id:020551 AF018006 T2704c prokMSA_id:008624 AF060534 Pseudomonas corrugata. prokMSA_id:039746 AF078418 Grassland soil clone sl3_611 prokMSA_id:008649 AF098465 Pseudomonas Iqa-1 str. Iqa-1. prokMSA_id:008650 AF098467 Pseudomonas Sag-1 str. Sag-1. prokMSA_id:048697 AF114639 gamma SUR-FREE-31 prokMSA_id:051420 AF114685 gamma DCM-FREE-1 prokMSA_id:041808 AF114689 gamma DCM-FREE-13 prokMSA_id:041151 AF128753 Soil ic139 prokMSA_id:031432 AF128766 Soil is132 prokMSA_id:047822 AF128767 Soil is133 prokMSA_id:048426 AF141521 gamma clone CRE-PA40 prokMSA_id:025101 AF141563 gamma clone CRO-14 prokMSA_id:018197 AF141568 gamma clone CRO-19 prokMSA_id:023270 AF210792 Pseudomonas sp. CAFB-eben-1 prokMSA_id:054778 AF210798 Pseudomonas sp. CAFB-JP4-4 prokMSA_id:039193 AF210800 Pseudomonas sp. CAFB-JP4-6 prokMSA_id:019047 AF210805 Pseudomonas sp. CAFB-naph-5 prokMSA_id:035408 AF210811 Pseudomonas sp. CAFB-tol-1 prokMSA_id:037996 AF214136 Pseudomonas sp. P71410 prokMSA_id:051734 AF245633 gamma NAC11-4 prokMSA_id:040421 AF245640 gamma NAC11-15 prokMSA_id:032057 AF274242 Pseudomonas sp. B20 prokMSA_id:023061 AF274243 Pseudomonas sp. B4 prokMSA_id:046255 AF286172 IAFBD2 prokMSA_id:031791 AF297703 Pseudomonas sp. prokMSA_id:039951 AF299367 Pseudomonas sp. PG-2000 prokMSA_id:020503 AF301220 Pseudomonas aureofaciens prokMSA_id:074061 AF311987 Pseudomonas putida a23 prokMSA_id:072588 AF311988 Pseudomonas syringae a41 prokMSA_id:017843 AF312676 Pseudomonas sp. PK4 prokMSA_id:035818 AF321040 Pseudomonas sp. GOBB3-219 prokMSA_id:066713 AF325141 Pseudomonas sp. B25KJ prokMSA_id:033800 AF375842 Pseudomonas sp. 15B prokMSA_id:039622 AF403725 Gamma MPD-89 prokMSA_id:018646 AF408871 Pseudomonas sp. NZTK7 prokMSA_id:052785 AF408882 Pseudomonas sp. NZPK2 prokMSA_id:037539 AF408891 Pseudomonas sp. NZWT2 prokMSA_id:072729 AF408895 Pseudomonas sp. NZCH8 prokMSA_id:072294 AF408896 Pseudomonas sp. NZCH4 prokMSA_id:024425 AF424753 Pseudomonas sp. clone M3sb9 prokMSA_id:070215 AF424757 gamma clone A3sb13 prokMSA_id:044659 AF429063 clone CR99-7-29 prokMSA_id:075641 AF431331 gamma clone N11.115WL prokMSA_id:075321 AF431366 gamma clone N41.128PG prokMSA_id:075502 AF431372 gamma clone N42.70PG prokMSA_id:072726 AF452130 Pseudomonas sp. LMG 20572 prokMSA_id:037710 AF453300 Pseudomonas sp. PsEGc prokMSA_id:038057 AF453304 Pseudomonas sp. PsEHc prokMSA_id:075565 AF481118 Thioalkalispira microaerophila strain ALEN 1 prokMSA_id:068705 AF484060 clone p77 prokMSA_id:064247 AF495871 Pseudomonas fluorescens prokMSA_id:058751 AF502425 Pseudomonas syringae pv. pisi strain 24.7 prokMSA_id:062838 AF526530 gamma clone MB10gamma-k1 prokMSA_id:061144 AF530117 isolate MGP DGGE Band 18B/19B prokMSA_id:075176 AF539687 Pseudomonas sp. Ni47 prokMSA_id:078449 AF547044 58 prokMSA_id:047744 AJ007527 Pseudomonas sp. strain NN016909 prokMSA_id:070800 AJ007532 Pseudomonas sp. strain NN016908 prokMSA_id:039744 AJ007533 Pseudomonas sp. strain NN016872 prokMSA_id:048529 AJ007535 Pseudomonas sp. strain NN016917 prokMSA_id:025664 AJ007536 Pseudomonas sp. strain NN016918 prokMSA_id:070435 AJ007537 Pseudomonas sp. strain NN016941 prokMSA_id:017867 AJ007540 Pseudomonas sp. strain NN016869 prokMSA_id:042078 AJ009710 Pseudomonas sp. isolate K104 prokMSA_id:073827 AJ011697 Pseudomonas sp. isolate gwf5a prokMSA_id:073264 AJ011698 Pseudomonas sp. isolate gwf6c prokMSA_id:069838 AJ233551 clone WR120 prokMSA_id:072282 AJ240924 gamma CHAB-II-39 5' prokMSA_id:017072 AJ240925 gamma CHAB-II-39 3' prokMSA_id:028775 AJ252603 Rhizosphere soil isolate RSI-36 prokMSA_id:071663 AJ286740 Pseudomonas sp. isolate DGGE band q prokMSA_id:018915 AJ288293 Pseudomonas taetrolens isolate GR9 prokMSA_id:049868 AJ289971 isolate CBS4-1 prokMSA_id:042544 AJ295439 Rape rhizosphere tsb041 prokMSA_id:053715 AJ314685 clone sl1517 prokMSA_id:029510 AJ314686 clone sl1317 prokMSA_id:017806 AJ314696 clone sl917 prokMSA_id:036857 AJ416663 gamma clone env.S048 prokMSA_id:075235 AJ428154 isolate band ao-b5 prokMSA_id:073874 AJ431289 clone 1_8 prokMSA_id:064736 AJ489332 Pseudomonas sp. Lgg5.1 strain Lgg5.1 prokMSA_id:064734 AJ489334 Pseudomonas sp. Lgg5.3 strain Lgg5.3 prokMSA_id:057537 AJ516041 Pseudomonas fulva strain B2/73 prokMSA_id:057528 AJ516053 Pseudomonas sp. B2/9 strain B2/9 prokMSA_id:087358 AJ561134 gamma clone ANT-RB 60 prokMSA_id:093997 AJ581643 gamma clone SB7 5' region prokMSA_id:093183 AJ581644 gamma clone SB7 3' region prokMSA_id:038765 AY039419 Earthworm burrow B3D1 prokMSA_id:036602 AY039423 Earthworm cast C29M1 prokMSA_id:043932 AY039426 Soil S102M1 prokMSA_id:053352 AY039427 Soil S2D2 prokMSA_id:074236 AY040356 Pseudomonas sp. LMG 20577 prokMSA_id:061639 AY043551 Pseudomonas sp. 4S2.C12 prokMSA_id:061637 AY043552 Pseudomonas sp. 2S2.C5 prokMSA_id:061638 AY043553 Pseudomonas sp. 3S2.E9 prokMSA_id:061636 AY043554 Pseudomonas sp. 3S2.D10 prokMSA_id:061635 AY043555 Pseudomonas sp. 5S2.B10 prokMSA_id:061633 AY043556 Pseudomonas sp. 3S2.H11 prokMSA_id:061632 AY043557 Pseudomonas sp. 3S2.D7 prokMSA_id:061628 AY043561 Pseudomonas sp. 2S2.E2 prokMSA_id:055613 AY043579 Forest soil 2S2.A5 prokMSA_id:055909 AY043591 Forest soil 4S2.G11 prokMSA_id:061603 AY043593 Forest soil 5S2.B8 prokMSA_id:061602 AY043594 Forest soil 3S2.C11 prokMSA_id:061600 AY043598 Forest soil 2S2.A1 prokMSA_id:061529 AY043688 gamma clone NOW2.62WL prokMSA_id:061527 AY043689 gamma clone NOW2.73WL prokMSA_id:061525 AY043693 gamma clone NOW2.VWL prokMSA_id:061513 AY043703 gamma clone NOS7.29WL prokMSA_id:061514 AY043705 gamma clone NOS7.98WL prokMSA_id:061430 AY043805 gamma clone NMS8.137WL prokMSA_id:061423 AY043813 gamma clone NMS8.41WL prokMSA_id:061288 AY043973 gamma clone N8P.07WL prokMSA_id:061287 AY043974 gamma clone N8P.08WL prokMSA_id:061286 AY043975 gamma clone N8P.09WL prokMSA_id:061285 AY043978 gamma clone S9P.09WL prokMSA_id:061280 AY044002 gamma clone N59P.03SM prokMSA_id:061275 AY044006 gamma clone S61P.24SM prokMSA_id:069596 AY044091 Pseudomonas sp. 19 prokMSA_id:065536 AY095428 yard-trimming-compost clone S-64 prokMSA_id:065096 AY095719 gamma NL-8 prokMSA_id:065093 AY095720 gamma NL-9F prokMSA_id:066125 AY100681 Pseudomonas sp. L38 prokMSA_id:063053 AY122290 Denitrifying CC1 prokMSA_id:062229 AY124485 S5-26 prokMSA_id:059519 AY136515 Pseudomonas sp. A-A20-2 prokMSA_id:059520 AY136516 Pseudomonas sp. A-A20-3 prokMSA_id:059508 AY136537 Pseudomonas sp. V-O7-3 prokMSA_id:059501 AY136541 Pseudomonas sp. V-O7-7 prokMSA_id:070878 AY136543 Pseudomonas sp. V-O7-1 prokMSA_id:055894 AY146660 Pseudomonas sp. K7 prokMSA_id:070287 AY146662 Pseudomonas sp. K10 prokMSA_id:069360 AY146663 Pseudomonas sp. K11 prokMSA_id:075347 AY168750 clone HC-66 prokMSA_id:078696 AY177778 isolate 4f39 prokMSA_id:079352 AY186866 clone uvel21 prokMSA_id:080370 AY191232 Pseudomonas putida prokMSA_id:086336 AY217469 gamma clone WCB174 prokMSA_id:084778 AY217476 Gamma WCIR6 prokMSA_id:082985 AY275477 Pseudomonas syringae isolate MSB2015 prokMSA_id:085306 AY275478 Pseudomonas syringae isolate MSB2018 prokMSA_id:083560 AY275483 Pseudomonas sp. MSB2097 prokMSA_id:086537 AY275488 Pseudomonas sp. MSB2082 prokMSA_id:090758 AY315457 Pseudomonas sp. CC-Ca87120 prokMSA_id:090260 AY321970 Pseudomonas sp. MF39 prokMSA_id:090312 AY321971 Pseudomonas sp. MF40 prokMSA_id:090091 AY321974 Pseudomonas sp. MF50 prokMSA_id:092010 AY330673 Pseudomonas sp. prokMSA_id:093196 AY365076 Pseudomonas sp. Ps2 prokMSA_id:093772 AY365081 Pseudomonas sp. Ps7 prokMSA_id:094764 AY365091 7PS16S prokMSA_id:094993 AY365092 8PS16S prokMSA_id:095626 AY395126 Pseudomonas sp. prokMSA_id:008664 U09775 clone JAP415. prokMSA_id:008660 U12222 str. B0623. prokMSA_id:008634 U52348 Pseudomonas putida str. IPL5. prokMSA_id:008627 U71003 Pseudomonas fluorescens str. A1/I. prokMSA_id:008608 X91449 clone A26ou. prokMSA_id:008661 X91451 clone A28t. prokMSA_id:008632 Z48272 Pseudomonas sp. str. S1.1. prokMSA_id:008630 Z48285 Pseudomonas sp. str. S3.1. prokMSA_id:008610 Z48287 Pseudomonas sp. str. S3.29. prokMSA_id:008636 Z48288 Pseudomonas sp. str. S3.3. prokMSA_id:008663 Z48291 Pseudomonas sp. str. S3.8. prokMSA_id:008609 Z76661 Pseudomonas amygdali str. L7 LMG 5694 . prokMSA_id:026988 Z77603 2-100 C1.20 2.28.3.13.14.2 PS.TOLAASII_SUBGROUP 674 seqs 2.28.3.13.14.2.002 OTU 1 seq prokMSA_id:008712 AF142786 clone ACE-4. 2.28.3.13.14.2.005 OTU 1 seq prokMSA_id:008696 AB020600 str. MBIC3958. 2.28.3.13.14.2.013 OTU 1 seq prokMSA_id:017958 AF354596 gamma Arctic96B-9 2.28.3.13.14.2.015 OTU 1 seq prokMSA_id:020181 AJ296549 GR-296.II.89 clone GR-296.II.89 2.28.3.13.14.2.016 OTU 1 seq prokMSA_id:021505 AF452103 Pseudomonas cellulosa 2.28.3.13.14.2.017 OTU 1 seq prokMSA_id:025219 AF424065 gamma MERTZ_2CM_40 2.28.3.13.14.2.018 OTU 4 seqs prokMSA_id:053344 AF424177 gamma MERTZ_21CM_283 prokMSA_id:044901 AF440703 gamma ARCT1-15 prokMSA_id:026739 AJ426420 Oleispira antarctica strain RB-8T prokMSA_id:047332 AJ426421 Oleispira antarcticam strain RB-9 2.28.3.13.14.2.019 OTU 7 seqs prokMSA_id:008673 AB021318 Pseudomonas MBIC3963 str. MBIC3963. prokMSA_id:020027 AF173970 Pseudomonas putida prokMSA_id:079706 AF468397 Arctic sea ice associated ARK10142 prokMSA_id:073068 AJ293824 Arctic seawater R7078 prokMSA_id:068916 AJ293825 Antarctic seawater R7375 prokMSA_id:029705 AJ293826 Arctic seawater R7366 prokMSA_id:067505 AY092073 Antarctic saline lake 33 strain 33 2.28.3.13.14.2.020 OTU 1 seq prokMSA_id:030797 AF285617 Car177 2.28.3.13.14.2.021 OTU 1 seq prokMSA_id:035374 AF210794 Pseudomonas sp. CAFB-eben-4 2.28.3.13.14.2.022 OTU 1 seq prokMSA_id:042421 U86459 marine pN1-38. 2.28.3.13.14.2.024 OTU 292 seqs prokMSA_id:008697 AB003628 str. 35L. prokMSA_id:008669 AB013253 str. NKB1. prokMSA_id:008721 AB013254 str. NKB2. prokMSA_id:008728 AB013827 str. 51.o. prokMSA_id:008729 AB013828 str. 9.j. prokMSA_id:008704 AB013843 str. 10-12.H. prokMSA_id:008705 AB013844 str. 4-5.l. prokMSA_id:008706 AB013845 str. 6-13.J. prokMSA_id:008730 AB015251 str. JTB247. prokMSA_id:008668 AB015557 str. BD4-3. prokMSA_id:008727 AB015570 str. BD5-14. prokMSA_id:008716 AB015575 str. BD6-5. prokMSA_id:008703 AB015581 str. BD7-5. prokMSA_id:008700 AB016428 Pseudomonas putida ATCC 17472. prokMSA_id:008733 AB021401 Pseudomonas marginalis str. pathovar reference strain ATCC 10844. prokMSA_id:049313 AB022204 Marine obligately oligotrophic POO-8 prokMSA_id:008734 AB024413 Pseudomonas KB700A str. KB700A. prokMSA_id:044073 AB051698 Pseudomonas sp. LAB-21 prokMSA_id:030745 AB051699 Pseudomonas sp. LAB-23 prokMSA_id:036178 AB051703 Pseudomonas sp. LAB-44 prokMSA_id:048560 AB056120 Pseudomonas veronii strain:INA06 prokMSA_id:077854 AB074633 gamma clone:APe2_79 prokMSA_id:077892 AB098591 Pseudomonas sp. TUT1023 prokMSA_id:008698 AF042858 Pseudomonas 'Shk 1' str. Shk 1. prokMSA_id:008688 AF064457 Pseudomonas orientalis str. CFML 96-170. prokMSA_id:008707 AF064459 Pseudomonas rhodesiae str. CFML 92-111 CIP 104664 . prokMSA_id:008672 AF064460 Pseudomonas veronii str. CFML 92-134 CIP 104663 . prokMSA_id:008689 AF064461 Pseudomonas cedrella str. CFML 96-198. prokMSA_id:069974 AF094722 Pseudomonas aureofaciens prokMSA_id:053538 AF094723 Pseudomonas chlororaphis prokMSA_id:026547 AF094725 Pseudomonas fluorescens strain ATCC 13525 prokMSA_id:074186 AF094727 Pseudomonas fluorescens strain ATCC 17397 prokMSA_id:069848 AF094731 Pseudomonas fluorescens strain ATCC 17574 prokMSA_id:047203 AF094732 Pseudomonas fluorescens strain ATCC 49642 prokMSA_id:024808 AF094738 Pseudomonas putida strain ATCC 17472 prokMSA_id:021571 AF094750 Pseudomonas tolaasii prokMSA_id:008715 AF098466 Pseudomonas Sag-50G str. Sag-50G. prokMSA_id:008680 AF100322 Pseudomonas brassicacearum str. NFM421 CFBP 11874. prokMSA_id:008681 AF100323 Pseudomonas thivervalensis str. SBK26 CFBP 11261. prokMSA_id:008677 AF105381 Pseudomonas PsC str. PsC. prokMSA_id:008676 AF105384 Pseudomonas PsF str. PsF. prokMSA_id:008675 AF105386 Pseudomonas PsH str. PsH. prokMSA_id:008674 AF105387 Pseudomonas PsI str. PsI. prokMSA_id:008726 AF112477 Azospirillum sp. prokMSA_id:033282 AF134704 Pseudomonas fluorescens operon rrnB complete prokMSA_id:046201 AF134705 Pseudomonas fluorescens operon rrnC prokMSA_id:008710 AF137359 Pseudomonas fluorescens. prokMSA_id:008713 AF142783 Pseudomonas ACE-1. prokMSA_id:019083 AF150718 Elbe River snow isolate IsoE3 prokMSA_id:026453 AF157486 Iron-reducing JLN-2 prokMSA_id:008724 AF159677 clone HstpL21. prokMSA_id:008725 AF159679 clone HstpL97. prokMSA_id:043220 AF177467 Pseudomonas sp. 22-27 prokMSA_id:043459 AF177468 Pseudomonas sp. 23-27 prokMSA_id:044764 AF177469 Pseudomonas sp. 37-27 prokMSA_id:050613 AF177474 Pseudomonas sp. 11-19 prokMSA_id:008690 AF177916 Pseudomonas DhA-91 str. DhA-91. prokMSA_id:008711 AF177918 Pseudomonas IpA-92 str. IpA-92. prokMSA_id:008699 AF184918 Pseudomonas DSM12877 str. PS+ DSM 12877. prokMSA_id:008695 AF195777 Pseudomonas H1 str. H1. prokMSA_id:008678 AF195875 Pseudomonas A2 str. A2. prokMSA_id:008679 AF195876 Pseudomonas KA2 str. KA2. prokMSA_id:032498 AF205133 Pseudomonas sp. 'FSL D1-015' prokMSA_id:025786 AF220327 O16G1 prokMSA_id:071739 AF220331 O18E12 prokMSA_id:023564 AF220333 O18F4 prokMSA_id:027133 AF228366 Pseudomonas fluorescens bv. G prokMSA_id:055746 AF230874 Pseudomonas synxantha prokMSA_id:052950 AF246660 Enrichment culture JMP-35 prokMSA_id:033387 AF251337 Pseudomonas sp. SV23 prokMSA_id:042961 AF255336 Pseudomonas tolaasii prokMSA_id:022349 AF268029 Pseudomonas grimontii prokMSA_id:044427 AF268968 Pseudomonas brennerii complete prokMSA_id:044011 AF274240 Pseudomonas sp. C1 prokMSA_id:017216 AF289503 sheep mite Llangefni 3 prokMSA_id:034018 AF289504 sheep mite Llangefni 4 prokMSA_id:044550 AF289505 sheep mite Llangefni 6 prokMSA_id:018648 AF290479 sheep mite Llangefni 15 prokMSA_id:019517 AF290488 sheep mite Welshpool 1 prokMSA_id:034487 AF290489 sheep mite Welshpool 13 prokMSA_id:037559 AF290490 sheep mite Welshpool 46 prokMSA_id:034665 AF290491 sheep mite Welshpool 59 prokMSA_id:074239 AF290492 sheep mite Welshpool 4 prokMSA_id:025298 AF290493 sheep mite Welshpool 49 prokMSA_id:035880 AF313466 Pseudomonas veronii prokMSA_id:017947 AF320337 gamma hs2_55 prokMSA_id:019748 AF320986 Pseudomonas tolaasii strain NCPPB 1116 prokMSA_id:072973 AF320987 Pseudomonas reactans prokMSA_id:074047 AF320988 Pseudomonas tolaasii strain NCPPB 2192 prokMSA_id:037361 AF320990 Pseudomonas tolaasii strain NCPPB 2325 prokMSA_id:050836 AF320992 Pseudomonas tolaasii strain NCPPB 741 prokMSA_id:040896 AF320993 Pseudomonas sp. NZI7 prokMSA_id:033806 AF320994 Pseudomonas tolaasii strain NZ027 prokMSA_id:035009 AF320995 Pseudomonas tolaasii strain NZ032 prokMSA_id:045547 AF321011 Pseudomonas sp. GOBB3-106 prokMSA_id:036891 AF321013 Pseudomonas borealis prokMSA_id:068846 AF321016 Pseudomonas sp. GOBB3-104 prokMSA_id:022656 AF321025 Pseudomonas sp. GOBB3-104-2 prokMSA_id:053958 AF321030 Pseudomonas sp. GOBB3-103 prokMSA_id:032960 AF321039 Pseudomonas rhodesiae prokMSA_id:032147 AF321048 Pseudomonas sp. GOBB3-207 prokMSA_id:032516 AF321239 Pseudomonas sp. PM-2001 prokMSA_id:020085 AF326378 Pseudomonas sp. MG1 prokMSA_id:045357 AF332541 Pseudomonas sp. B65 prokMSA_id:016810 AF336349 Pseudomonas fluorescens prokMSA_id:050165 AF336352 Pseudomonas fluorescens prokMSA_id:072628 AF348507 Pseudomonas tolaasii complete prokMSA_id:074250 AF348508 Pseudomonas corrugata complete prokMSA_id:037569 AF351240 Pseudomonas sp. cb3 prokMSA_id:059382 AF364098 Pseudomonas marginalis strain NZCX27 prokMSA_id:067535 AF374472 Pseudomonas costantinii prokMSA_id:039430 AF375833 Pseudomonas sp. C101A prokMSA_id:051681 AF375839 Pseudomonas sp. E206 prokMSA_id:042200 AF376440 ckncm207-F4M.1D8 prokMSA_id:051863 AF380369 Pseudomonas sp. CM10-1 prokMSA_id:043407 AF380370 Pseudomonas sp. CM10-2 prokMSA_id:058547 AF386080 Pseudomonas mediterranea strain CFBP 5447 prokMSA_id:058546 AF386081 Pseudomonas mediterranea strain CFBP 5488 prokMSA_id:030029 AF388027 Pseudomonas sp. 31 prokMSA_id:020622 AF388206 Pseudomonas sp. NZ081 prokMSA_id:017860 AF396931 Pseudomonas sp. ST5 prokMSA_id:052734 AF405328 Pseudomonas extremorientalis prokMSA_id:050028 AF414572 clone P3IU-27 prokMSA_id:042523 AF448039 Pseudomonas sp. SCD-3a prokMSA_id:028041 AF448040 Pseudomonas sp. SCD-4 prokMSA_id:028467 AF448041 Pseudomonas sp. SCD-7 prokMSA_id:016371 AF451275 Pseudomonas sp. AH2 prokMSA_id:077477 AF456212 Pseudomonas sp. gs7 prokMSA_id:077313 AF456213 Pseudomonas sp. gs14 prokMSA_id:077468 AF456214 Pseudomonas sp. New10529 prokMSA_id:077306 AF456215 Pseudomonas sp. New10530 prokMSA_id:077564 AF456222 Pseudomonas sp. 10569 prokMSA_id:077460 AF456225 Pseudomonas sp. S67-2 prokMSA_id:077356 AF456226 Pseudomonas sp. 34K4 prokMSA_id:077301 AF456229 Pseudomonas sp. S16-2 prokMSA_id:068456 AF459797 Symbiont cf. Pseudomonas of Acromyrmex octospinosus prokMSA_id:068723 AF479384 clone pG500K-80 prokMSA_id:068722 AF479385 clone pG500K-85 prokMSA_id:068718 AF479387 clone pG500K-96 prokMSA_id:068717 AF479388 clone pG500K-98 prokMSA_id:068716 AF479389 clone pG500K-106 prokMSA_id:065511 AF501352 Pseudomonas migulae strain HAMBI2394 prokMSA_id:065498 AF501370 Pseudomonas migulae strain HAMBI2376 prokMSA_id:066296 AF506042 Pseudomonas sp. LCSAOTU4 prokMSA_id:058730 AF521652 Pseudomonas sp. 9-1 prokMSA_id:062415 AF529099 gamma clone FTL213 prokMSA_id:062389 AF529132 gamma clone FTLpost17 prokMSA_id:062384 AF529134 gamma clone FTLpost39 prokMSA_id:059301 AF539745 Pseudomonas veronii UFZ-B549 prokMSA_id:008709 AJ002801 str. 150. prokMSA_id:008701 AJ012712 Pseudomonas borealis str. MA342. prokMSA_id:008682 AJ232801 unnamed organism. prokMSA_id:008683 AJ232872 unnamed organism. prokMSA_id:043071 AJ237965 Pseudomonas sp. isolate EK1 prokMSA_id:022698 AJ249382 Pseudomonas frederiksbergensis strain JAJ28 prokMSA_id:019479 AJ252604 Rhizosphere soil isolate RSI-37 prokMSA_id:016997 AJ252605 Rhizosphere soil isolate RSI-38 prokMSA_id:036197 AJ252659 Agricultural soil clone SC-I-83 prokMSA_id:028604 AJ252739 Potato plant root clone RC-III-91 prokMSA_id:078114 AJ271413 Pseudomonas sp. isolate NAF88 prokMSA_id:026680 AJ278813 Pseudomonas fluorescens strain Q2-87 prokMSA_id:021916 AJ278814 Pseudomonas fluorescens strain F113 prokMSA_id:025423 AJ288143 Pseudomonas sp. isolate Ki-1z prokMSA_id:038552 AJ291845 Pseudomonas sp. IrT-R9M1-9 prokMSA_id:050915 AJ292381 Pseudomonas brassicacearum strain 520-1 prokMSA_id:035287 AJ292426 Pseudomonas kilonensis strain 520-20 prokMSA_id:048794 AJ292678 WD2111 clone WD2111 prokMSA_id:034385 AJ293858 Pseudomonas brassicacearum strain CFBP 11706 prokMSA_id:030842 AJ293859 Pseudomonas brassicacearum strain CFBP 11874 prokMSA_id:019794 AJ295374 Rape rhizosphere cse074 prokMSA_id:048399 AJ295644 Pseudomonas sp. KF/GS-Gitt2-41 prokMSA_id:032814 AJ295653 KF/GS-JG36-13 prokMSA_id:051252 AJ306832 Pseudomonas sp. isolate ON1 prokMSA_id:070756 AJ308300 Pseudomonas chlororaphis isolate ICMP 13610; NRRL B-1576 prokMSA_id:024702 AJ308304 Pseudomonas fluorescens strain Biotype B prokMSA_id:016465 AJ308305 Pseudomonas fluorescens strain Biotype C prokMSA_id:037579 AJ308307 Pseudomonas fluorescens strain Biotype G prokMSA_id:071567 AJ308308 Pseudomonas fluorescens isolate ICMP 3512; ATCC 13525; NCIB 9046 prokMSA_id:020080 AJ308309 Pseudomonas marginalis isolate ICMP 3553; ATCC 10844 prokMSA_id:033516 AJ308312 Pseudomonas putida strain Biotype B prokMSA_id:075590 AJ318914 Pseudomonas putida strain EN1 prokMSA_id:075434 AJ318919 Pseudomonas sp. ED3 strain ED3 prokMSA_id:064749 AJ319577 gamma clone Thailand-9-QC prokMSA_id:045948 AJ344196 isolate BUG-62 prokMSA_id:019054 AJ344206 isolate LES-154 prokMSA_id:020653 AJ417068 Pseudomonas sp. CM1'A2 strain CM1'A2 prokMSA_id:052266 AJ417069 Pseudomonas sp. Q37-87 strain Q37-87 prokMSA_id:022611 AJ417070 Pseudomonas sp. PITR2 strain PITR2 prokMSA_id:051140 AJ417072 Pseudomonas sp. Pf-5 strain Pf-5 prokMSA_id:038949 AJ417074 Pseudomonas sp. Q65c-80 strain Q65c-80 prokMSA_id:029971 AJ417370 Pseudomonas sp. Circle strain Circle prokMSA_id:072578 AJ419671 Pseudomonas sp. 4N1-2 prokMSA_id:017680 AJ419672 Pseudomonas sp. 4N1-3 prokMSA_id:023419 AJ419673 Pseudomonas sp. 4N4-1 prokMSA_id:023585 AJ419675 Pseudomonas sp. 5N1-1 prokMSA_id:084113 AJ440983 Antarctic R-7616 strain R-7616 prokMSA_id:063914 AJ492829 Pseudomonas poae strain DSM 14936T prokMSA_id:063912 AJ492830 Pseudomonas fulgida strain DSM 14938T prokMSA_id:063913 AJ492831 Pseudomonas trivialis strain DSM 14937T prokMSA_id:062875 AJ496564 Pseudomonas rhodesiae isolate PF1 prokMSA_id:076308 AJ519660 gamma clone GuBH2-AG-52 prokMSA_id:075222 AJ532710 gamma clone JG34-KF-115 prokMSA_id:076605 AJ534625 gamma clone JG36-TzT-72 prokMSA_id:078622 AJ536422 Pseudomonas sp. 7:3 isolate 7:3 697BP prokMSA_id:079157 AJ537601 Pseudomonas antarctica strain CMS 35T prokMSA_id:079601 AJ537602 Pseudomonas meridiana strain CMS 38T prokMSA_id:079186 AJ537603 Pseudomonas proteolytica strain CMS 64T prokMSA_id:083510 AJ550465 Pseudomonas chlororaphis prokMSA_id:093390 AJ551142 Pseudomonas sp. An1 isolate An1 prokMSA_id:093395 AJ551157 Pseudomonas sp. An19 isolate An19 prokMSA_id:093563 AJ551158 Pseudomonas sp. An20 isolate An20 prokMSA_id:085062 AJ556801 Pseudomonas sp. MWH1 prokMSA_id:083040 AJ557834 clone B7 prokMSA_id:095765 AJ575711 gamma clone SW77 prokMSA_id:096106 AJ575713 gamma clone NE23 prokMSA_id:088635 AJ576246 Pseudomonas fluorescens isolate 10CW prokMSA_id:093858 AJ581936 Pseudomonas fluorescens strain 2R1-7 prokMSA_id:093669 AJ581942 Pseudomonas fluorescens strain 2R4-19 prokMSA_id:093381 AJ581957 Pseudomonas putida strain 2Re4-1 prokMSA_id:093684 AJ581965 Pseudomonas fluorescens strain 3R2-23 prokMSA_id:093412 AJ581999 Pseudomonas lurida strain DSM 15835T prokMSA_id:094698 AJ583090 Pseudomonas fluorescens ITS1 and 23S strain 62e prokMSA_id:096669 AJ585222 Pseudomonas sp. PS-WolkK3 strain PS-WolfK3 prokMSA_id:072253 AY014800 Pseudomonas sp. NZ006 prokMSA_id:053759 AY014802 Pseudomonas sp. NZ009 prokMSA_id:050895 AY014804 Pseudomonas sp. NZ014 prokMSA_id:026170 AY014806 Pseudomonas sp. NZ024 prokMSA_id:074265 AY014807 Pseudomonas sp. NZ031 prokMSA_id:043326 AY014811 Pseudomonas sp. NZ052 prokMSA_id:073574 AY014813 Pseudomonas sp. NZ060 prokMSA_id:019120 AY014814 Pseudomonas sp. NZ062 prokMSA_id:019236 AY035996 Pseudomonas lini prokMSA_id:020693 AY037615 soil clone S092 prokMSA_id:031583 AY037668 earthworm cast clone C009 prokMSA_id:039028 AY037702 earthworm cast clone C051 prokMSA_id:032377 AY037714 earthworm cast clone C064 prokMSA_id:066023 AY043360 Pseudomonas rhodesiae strain KK1 complete prokMSA_id:021043 AY053489 AT425_EubD5 prokMSA_id:049007 AY071916 Pseudomonas marginalis prokMSA_id:068487 AY081814 Pseudomonas veronii strain CA-4 complete prokMSA_id:068653 AY081990 clone KRA30-19 prokMSA_id:067416 AY091527 Pseudomonas palleroniana prokMSA_id:067413 AY091528 Pseudomonas salomonii prokMSA_id:072334 AY093461 clone MB-A2-106 prokMSA_id:062453 AY102030 Gamma HTCC172 prokMSA_id:060448 AY131215 Pseudomonas sp. Fa3 prokMSA_id:060445 AY131218 Pseudomonas sp. Fa8 prokMSA_id:059203 AY144583 Pseudomonas veronii strain UFZ-B547 prokMSA_id:076618 AY160686 G5 prokMSA_id:083167 AY166836 Pseudomonas sp. clone IV prokMSA_id:081815 AY179328 Pseudomonas veronii prokMSA_id:081078 AY216795 Pseudomonas chlororaphis prokMSA_id:086500 AY225158 Pseudomonas tolaasii complete prokMSA_id:090145 AY239616 Pseudomonas sp. operon rrnB prokMSA_id:085548 AY250091 clone 12 prokMSA_id:083261 AY250110 clone 158 prokMSA_id:083047 AY263471 Pseudomonas sp. BE1dil prokMSA_id:083583 AY263473 Pseudomonas sp. BE4dil prokMSA_id:082913 AY263475 Pseudomonas sp. WE7#2b prokMSA_id:083726 AY263476 Pseudomonas sp. SE7#1 prokMSA_id:086068 AY263477 Pseudomonas sp. SE22#1a prokMSA_id:086377 AY263479 Pseudomonas sp. R1enr prokMSA_id:089654 AY308042 Pseudomonas sp. AZ18L2 prokMSA_id:088584 AY308043 Pseudomonas sp. AZ18R1 prokMSA_id:090152 AY308059 Pseudomonas sp. AZ18L1 prokMSA_id:090208 AY336121 Pseudomonas sp. SD-10 prokMSA_id:091081 AY336542 Pseudomonas sp. pfB13 prokMSA_id:091840 AY336564 Pseudomonas sp. pfB35 prokMSA_id:091218 AY339888 Pseudomonas sp. NJU002 complete prokMSA_id:091080 AY339889 Pseudomonas sp. NJU001 complete prokMSA_id:093682 AY364085 Pseudomonas sp. 'ARDRA PS1' prokMSA_id:093297 AY364086 Pseudomonas sp. 'ARDRA PS2' prokMSA_id:094031 AY366185 Pseudomonas sp. Ki353 prokMSA_id:098427 AY378187 Extreme arid zone HX-IE25 prokMSA_id:098354 AY378251 Glacial ice MS-T13-01 prokMSA_id:008665 D84013 Pseudomonas fluorescens IAM 12022 . prokMSA_id:072372 D84013 Pseudomonas fluorescens complete prokMSA_id:008720 D84028 Pseudomonas tolaasii ATCC 33618 . prokMSA_id:070883 D84028 Pseudomonas tolaasii prokMSA_id:008684 D85993 Pseudomonas putida ATCC 17484. prokMSA_id:008685 D86000 Pseudomonas putida NCIMB 9816. prokMSA_id:008666 D86001 Pseudomonas fluorescens IAM 12022 . prokMSA_id:008686 D86002 Pseudomonas fluorescens DSM 50108. prokMSA_id:008687 D86003 Pseudomonas fluorescens NCIMB 9815. prokMSA_id:008708 U85870 str. A177. prokMSA_id:071371 X91452 sp. clone group A29mn prokMSA_id:051827 Y13327 Arthrobacter ramosus prokMSA_id:008723 Z29622 Azospirillum sp. str. AM-53 DSM 1727. prokMSA_id:008702 Z76656 Pseudomonas aureofaciens DSM 6698. prokMSA_id:008732 Z76663 Pseudomonas marginalis str. pathovar reference strain LMG 2210 prokMSA_id:008717 Z76670 Pseudomonas tolaasii LMG 2342 . prokMSA_id:038968 Z76673 P.chlororaphis strain DSM 50083T 2.28.3.13.14.2.025 OTU 1 seq prokMSA_id:045426 AF285611 Car165f 2.28.3.13.14.2.026 OTU 1 seq prokMSA_id:045454 AJ232854 clone LRS6 2.28.3.13.14.2.027 OTU 1 seq prokMSA_id:070607 AF420363 isolate C1_B013 2.28.3.13.14.2.028 OTU 1 seq prokMSA_id:047070 AF333530 gamma clone R140 2.28.3.13.14.2.029 OTU 1 seq prokMSA_id:047143 AF440706 gamma ARCT1-18 2.28.3.13.14.2.030 OTU 1 seq prokMSA_id:047749 AB041300 ECS30 2.28.3.13.14.2.031 OTU 1 seq prokMSA_id:048531 AY017062 Pseudomonas sp. CL-2 5'- 2.28.3.13.14.2.032 OTU 1 seq prokMSA_id:050502 AY053495 AT425_EubG1 2.28.3.13.14.2.033 OTU 1 seq prokMSA_id:051918 AF319548 alpha SB-2000 2.28.3.13.14.2.034 OTU 1 seq prokMSA_id:053457 AF139996 Pseudomonas sp. ML-120 2.28.3.13.14.2.035 OTU 1 seq prokMSA_id:059779 AY133415 clone BB2_186 2.28.3.13.14.2.036 OTU 1 seq prokMSA_id:062458 AY102022 Gamma HTCC153 2.28.3.13.14.2.037 OTU 1 seq prokMSA_id:063060 AB088548 Pseudomonas sp. LCH4 2.28.3.13.14.2.038 OTU 1 seq prokMSA_id:065150 AY095655 OS2K-4 2.28.3.13.14.2.039 OTU 1 seq prokMSA_id:066956 AF482685 Pseudomonas sp. NMX 2.28.3.13.14.2.040 OTU 1 seq prokMSA_id:075653 AY164366 gamma clone BLIB-15 2.28.3.13.14.2.041 OTU 1 seq prokMSA_id:076910 AJ532697 gamma clone Gitt-KF-195 2.28.3.13.14.2.042 OTU 1 seq prokMSA_id:081675 AY218620 clone KD3-89 2.28.3.13.14.2.043 OTU 1 seq prokMSA_id:083415 AY239532 clone CARB_ESS_1 2.28.3.13.14.2.044 OTU 1 seq prokMSA_id:085522 AY197388 clone B01R021 2.28.3.13.14.2.045 OTU 1 seq prokMSA_id:089868 AY308057 Pseudomonas sp. AZ18R2 2.28.3.13.14.2.046 OTU 1 seq prokMSA_id:092243 AY354852 gamma clone PLY-P3-21 2.28.3.13.14.2.047 OTU 1 seq prokMSA_id:092411 AY354184 clone pIR3BC09 2.28.3.13.14.2.048 OTU 1 seq prokMSA_id:093852 AJ581987 Pseudomonas putida strain 3Re4-21 2.28.3.13.14.2.049 OTU 1 seq prokMSA_id:096042 AY378246 Glacial ice MS-T13-02 2.28.3.13.14.2.050 OTU 1 seq prokMSA_id:096480 AY211757 gamma clone GoM GC631S5 2.28.3.13.14.2.051 OTU 1 seq prokMSA_id:097875 AY378242 Glacial ice MS-T3-04 2.28.3.13.14.2.999 poor quality 335 seqs prokMSA_id:037639 AB003446 prokMSA_id:041351 AB011753 gamma strain: G21005 prokMSA_id:021623 AB011754 gamma strain: G21010 prokMSA_id:037093 AB011755 gamma strain: G21028 prokMSA_id:016444 AB011756 gamma strain: G21029 prokMSA_id:037969 AB011760 gamma strain: G22027 prokMSA_id:041459 AB013403 Pseudomonas sp. KL15 prokMSA_id:008714 AB021410 Pseudomonas rhodesiae str. CFML 92-111 CIP 104664 . prokMSA_id:008692 AB021411 Pseudomonas veronii str. CFML 92-134 CIP 104663 . prokMSA_id:008693 AB021412 Pseudomonas aurantiaca ATCC 33663. prokMSA_id:032568 AB022298 Obligately oligotrophic POCPN-71 prokMSA_id:045512 AB022302 Obligately oligotrophic POC-112 prokMSA_id:048538 AB022334 obligately oligotrophic POT-21 prokMSA_id:023101 AB022338 obligately oligotrophic POCPN-3 prokMSA_id:037195 AB022704 Obligately oligotrophic POO-2 prokMSA_id:042171 AB022709 Obligately oligotrophic POT-11 prokMSA_id:031743 AB022710 Obligately oligotrophic POT-12 prokMSA_id:033059 AB022712 Obligately oligotrophic POCPN-83 prokMSA_id:035439 AB022820 Obligately oligotrophic POCPN-72 prokMSA_id:048880 AB023599 NIC004 prokMSA_id:030694 AB023601 NIC007 prokMSA_id:025457 AB023602 NIC008 prokMSA_id:038149 AB023603 NIC009 prokMSA_id:041644 AB023607 NIC016 prokMSA_id:049514 AB023612 NIC023 prokMSA_id:016587 AB028924 Pseudomonas sp. MIS38 3' side prokMSA_id:016564 AB041301 ECS31 prokMSA_id:025337 AB042418 Vestimentiferan symbiont TW-6 prokMSA_id:021432 AB042517 methane-seep sediment SB-1 prokMSA_id:075750 AB075061 clone:KCRS3 prokMSA_id:075454 AB075063 clone:KCRS7 prokMSA_id:076357 AB075089 clone:KCR19 prokMSA_id:075584 AB075090 clone:KCR20 prokMSA_id:027947 AF010025 prokMSA_id:020774 AF010033 prokMSA_id:033620 AF016526 HRS-13 prokMSA_id:071317 AF016722 soil clone S-6 prokMSA_id:028990 AF025573 Pseudomonas azotoformans strain ANT3 prokMSA_id:008667 AF068010 Pseudomonas fluorescens str. VUN 10 011. prokMSA_id:033871 AF078325 Grassland soil clone sl1_019 prokMSA_id:074559 AF094728 Pseudomonas fluorescens strain ATCC 17482 prokMSA_id:008694 AF098464 Pseudomonas Cam-1 str. Cam-1. prokMSA_id:028120 AF128763 Soil is117 prokMSA_id:035380 AF128765 Soil is13 prokMSA_id:018346 AF175605 WJGRT-54 prokMSA_id:024510 AF175650 WJGRT-149 prokMSA_id:077456 AF188884 8F21 prokMSA_id:043066 AF193888 Pseudomonas sp. prokMSA_id:020600 AF194198 gamma n19d prokMSA_id:024021 AF210807 Pseudomonas sp. CAFB-pxyl-1 prokMSA_id:041784 AF210808 Pseudomonas sp. CAFB-pxyl-2 prokMSA_id:040227 AF210810 Pseudomonas sp. CAFB-pxyl-4 prokMSA_id:043003 AF210812 Pseudomonas sp. CAFB-tol-2 prokMSA_id:044526 AF210813 Pseudomonas sp. CAFB-tol-3 prokMSA_id:042689 AF240117 PIA-1 prokMSA_id:029122 AF240118 PIA-2 prokMSA_id:038321 AF240119 PIA-3 prokMSA_id:072813 AF240121 PIA-5 prokMSA_id:041976 AF240122 PIA-6 prokMSA_id:018453 AF240123 PIA-7 prokMSA_id:034905 AF240124 PIA-8 prokMSA_id:073435 AF240125 PIA-9 prokMSA_id:041131 AF240126 PIA-10 prokMSA_id:039390 AF240127 PIA-11 prokMSA_id:030689 AF246661 Enrichment culture JMP-38 prokMSA_id:052443 AF246662 Enrichment culture JMP-10a prokMSA_id:037049 AF246663 Enrichment culture JMP-8a prokMSA_id:051279 AF250400 Pseudomonas sp. 355 prokMSA_id:050773 AF257294 marine gamma DHB-31 prokMSA_id:019030 AF261807 manure pit P320 prokMSA_id:038805 AF274241 Pseudomonas sp. C prokMSA_id:023886 AF287036 gamma EC-I28 prokMSA_id:035462 AF287037 gamma EC-A1 prokMSA_id:051759 AF288712 Pseudomonas sp. HD-2000/4 prokMSA_id:051935 AF288722 Pseudomonas sp. HD-2000/14 prokMSA_id:048879 AF288724 Pseudomonas sp. HD-2000/16 prokMSA_id:074155 AF288727 Pseudomonas putida strain Bm3 prokMSA_id:073696 AF288729 Pseudomonas putida strain Am2 prokMSA_id:074294 AF288733 Pseudomonas sp. Ep2 prokMSA_id:069809 AF288736 Pseudomonas sp. Dp2 prokMSA_id:029920 AF297700 Pseudomonas sp. prokMSA_id:030778 AF311387 Pseudomonas marginalis complete prokMSA_id:040694 AF312675 Pseudomonas sp. K319 prokMSA_id:038494 AF322027 Pseudomonas rhodesiae prokMSA_id:066716 AF325135 Pseudomonas sp. A25 prokMSA_id:066717 AF325140 Pseudomonas sp. B20KJ prokMSA_id:025489 AF332273 clone C12-27 prokMSA_id:026248 AF333092 Pseudomonas sp. B3 prokMSA_id:068225 AF365498 clone BM89MF5BB6 prokMSA_id:068200 AF365527 clone BM89MF5BG6 prokMSA_id:068138 AF365598 clone BT60MF2BH11 prokMSA_id:068132 AF365604 clone BT60MF7BA6 prokMSA_id:068123 AF365613 clone BT60MF7BD6 prokMSA_id:068120 AF365617 clone BT60MF7BE7 prokMSA_id:068112 AF365625 clone BT60MF7BH2 prokMSA_id:067921 AF365857 clone BT60PA10BG6 prokMSA_id:044453 AF375847 Pseudomonas sp. C201 prokMSA_id:029820 AF376343 ckncm110-B52.C10 prokMSA_id:039322 AF387326 clone PN4 prokMSA_id:017831 AF390956 clone TFBME10 prokMSA_id:016341 AF393449 A4 prokMSA_id:073647 AF393450 A5 prokMSA_id:072096 AF393451 A6 prokMSA_id:021056 AF393454 A15 prokMSA_id:074151 AF393464 A39 prokMSA_id:052199 AF395311 isopod gut clone RKPsN prokMSA_id:027493 AF395312 isopod gut clone RKPsAC prokMSA_id:021438 AF408864 Pseudomonas sp. NZWT4 prokMSA_id:030351 AF408865 Pseudomonas sp. NZWT10 prokMSA_id:031465 AF408873 Pseudomonas sp. NZHA7 prokMSA_id:042652 AF408877 Pseudomonas sp. NZLN2 prokMSA_id:047078 AF408878 Pseudomonas sp. NZWT9 prokMSA_id:022706 AF408879 Pseudomonas sp. NZWT8 prokMSA_id:033508 AF408880 Pseudomonas sp. NZPK4 prokMSA_id:073075 AF408881 Pseudomonas sp. NZHA9 prokMSA_id:019854 AF408885 Pseudomonas sp. NZCH5 prokMSA_id:023856 AF408887 Pseudomonas sp. NZPN8 prokMSA_id:036683 AF408888 Pseudomonas sp. NZPN6 prokMSA_id:018455 AF408889 Pseudomonas sp. NZHA1 prokMSA_id:028055 AF408897 Pseudomonas sp. NZHA3 prokMSA_id:047893 AF408898 Pseudomonas sp. NZHA8 prokMSA_id:050298 AF408901 Pseudomonas sp. NZCH11 prokMSA_id:042132 AF408906 Pseudomonas sp. C95D prokMSA_id:024571 AF408907 Pseudomonas sp. C94A prokMSA_id:044273 AF408916 Pseudomonas sp. C80E prokMSA_id:042771 AF408917 Pseudomonas sp. C80A prokMSA_id:036574 AF408923 Pseudomonas sp. C63A prokMSA_id:046209 AF408941 Pseudomonas sp. C06A prokMSA_id:025988 AF408942 Pseudomonas sp. C05E prokMSA_id:028496 AF430000 Pseudomonas sp. FB5-42 prokMSA_id:033988 AF430004 Pseudomonas sp. 1g 74 prokMSA_id:077072 AF431354 gamma clone N27.43SM prokMSA_id:017558 AF440443 Pseudomonas sp. SW2.2A prokMSA_id:046251 AF441301 PAH-contaminated sludge PB-6 prokMSA_id:043751 AF441302 PAH-contaminated sludge PB-7 prokMSA_id:047625 AF447138 clone TDC-S5:7 prokMSA_id:038416 AF451260 Pseudomonas sp. A73 prokMSA_id:043561 AF451266 Pseudomonas sp. E156 prokMSA_id:052101 AF453294 Pseudomonas sp. PsEB prokMSA_id:018632 AF457652 Pseudomonas sp. TA8 prokMSA_id:055427 AF494502 Pseudomonas sp. clone GOBB3-B10-3-2 prokMSA_id:064255 AF495870 Pseudomonas sp. PHZ22 prokMSA_id:058752 AF502424 Pseudomonas chlororaphis strain PHZ26 prokMSA_id:058749 AF502426 Pseudomonas fluorescens strain SSB17 prokMSA_id:066148 AF509476 Pseudomonas sp. MF8 prokMSA_id:069526 AF513432 Pseudomonas sp. Lip2 prokMSA_id:055976 AF534232 alpha clone alpha ca3 prokMSA_id:059093 AF539808 Pseudomonas sp. M19 prokMSA_id:044366 AJ005872 clone TRS26 prokMSA_id:027770 AJ005874 clone TRS10 prokMSA_id:044081 AJ006092 clone TBS9 prokMSA_id:047864 AJ006094 clone TBS26 prokMSA_id:070040 AJ007519 Pseudomonas sp. strain NN017096 prokMSA_id:073169 AJ007520 Pseudomonas sp. strain NN017100 prokMSA_id:028908 AJ007521 Pseudomonas sp. strain NN017080 prokMSA_id:072918 AJ007522 Pseudomonas sp. strain NN017083 prokMSA_id:072598 AJ007523 Pseudomonas sp. strain NN017095 prokMSA_id:070406 AJ007524 Pseudomonas sp. strain NN017090 prokMSA_id:024974 AJ007525 Pseudomonas sp. strain NN017091 prokMSA_id:024328 AJ007526 Pseudomonas sp. strain NN017087 prokMSA_id:030807 AJ007531 Pseudomonas sp. strain NN016901 prokMSA_id:071280 AJ007541 Pseudomonas sp. strain NN017118 prokMSA_id:074833 AJ007542 Pseudomonas sp. strain NN017094 prokMSA_id:030899 AJ232800 clone TRE17 prokMSA_id:017868 AJ232802 clone TRE18 prokMSA_id:072065 AJ232803 clone TRE28 prokMSA_id:019391 AJ232855 clone LRS23 prokMSA_id:031206 AJ232870 clone LRE20 prokMSA_id:047766 AJ232871 clone LRE6 prokMSA_id:049360 AJ289728 Desulfomicrobium apsheronum strain KB35 prokMSA_id:050750 AJ289744 Desulfomicrobium apsheronum strain RS16 prokMSA_id:017580 AJ289972 isolate CBS4-10 prokMSA_id:027053 AJ289978 isolate CBS4-39 prokMSA_id:038989 AJ295388 Rape rhizosphere M9018 prokMSA_id:043452 AJ295392 Rape rhizosphere M9028 prokMSA_id:020253 AJ295399 Rape rhizosphere M9042 prokMSA_id:045156 AJ295406 Rape rhizosphere M9055 prokMSA_id:042819 AJ295416 Rape rhizosphere M9096 prokMSA_id:026511 AJ295460 Rape rhizosphere tsb091 prokMSA_id:042037 AJ308299 Pseudomonas aurantiaca isolate ICMP 6003; NCIB 10068 prokMSA_id:073203 AJ308317 Pseudomonas tolaasii isolate ICMP 12833 prokMSA_id:031849 AJ310393 Pseudomonas fluorescens strain SBW25 prokMSA_id:025103 AJ311401 maize rhizosphere c15_23 prokMSA_id:040450 AJ314689 clone slf192 prokMSA_id:049790 AJ314690 clone slf242 prokMSA_id:041970 AJ314692 clone sl1017 prokMSA_id:046940 AJ314693 clone sl817 prokMSA_id:053184 AJ314694 clone sl1618 prokMSA_id:039347 AJ344483 Pseudomonas anguilliseptica strain SI-2-6 prokMSA_id:036014 AJ400529 clone Hb1-K3 prokMSA_id:073708 AJ400532 clone Hb1-K7 prokMSA_id:038585 AJ405051 A25-K2 clone A25-K2 prokMSA_id:017719 AJ405052 A25-K1 clone A25-K1 prokMSA_id:070953 AJ419656 clone R14a prokMSA_id:072095 AJ431321 clone 2_4 prokMSA_id:079999 AJ437113 clone b5-01 prokMSA_id:080095 AJ437115 clone b9-01 prokMSA_id:059125 AJ440498 Pseudomonas sp. BA1.6 isolate BA1.6 prokMSA_id:056388 AJ440500 Pseudomonas sp. BA2.5 isolate BA2.5 prokMSA_id:059122 AJ440501 Pseudomonas sp. BA3.1 isolate BA3.1 prokMSA_id:073413 AJ440502 Pseudomonas sp. BH10.2 isolate BH10.2 prokMSA_id:059120 AJ440503 Pseudomonas sp. BH10.5 isolate BH10.5 prokMSA_id:056500 AJ440505 Pseudomonas sp. BH11.6 isolate BH11.6 prokMSA_id:056362 AJ518168 clone Mul1P2-25 prokMSA_id:074452 AJ518171 clone Mul1P2-34 prokMSA_id:090235 AJ574895 Pseudomonas fluorescens strain S3 prokMSA_id:090346 AJ575064 Pseudomonas sp. T6 strain T6 prokMSA_id:090778 AJ575065 Pseudomonas reactans strain 1T6 prokMSA_id:089034 AJ575066 Pseudomonas reactans strain 1T9 prokMSA_id:092431 AJ580659 clone NN325-15 prokMSA_id:092467 AJ580666 clone NN325-88 prokMSA_id:092731 AJ581118 Pseudomonas fluorescens strain 1R1-2 prokMSA_id:094205 AJ581632 gamma clone SB6 prokMSA_id:094246 AJ581647 gamma clone LL4 5' region prokMSA_id:094259 AJ581649 gamma clone LL1 5' region prokMSA_id:094076 AJ581943 Pseudomonas fluorescens strain 2R4-25 prokMSA_id:093580 AJ581953 Pseudomonas fluorescens strain 2Re1-16 prokMSA_id:093453 AJ581954 Pseudomonas fluorescens strain 2Re1-18 prokMSA_id:094171 AJ581962 Pseudomonas fluorescens strain 3R1-11 prokMSA_id:093600 AJ581968 Pseudomonas fluorescens strain 3R3-13 prokMSA_id:093307 AJ581970 Pseudomonas reactans strain 3R3-27 prokMSA_id:093170 AJ581975 Pseudomonas reactans strain 3Re2-7 prokMSA_id:094072 AJ581976 Pseudomonas fluorescens strain 3Re2-9 prokMSA_id:093367 AJ581977 Pseudomonas fluorescens strain 3Re2-12 prokMSA_id:094148 AJ581978 Pseudomonas fluorescens strain 3Re2-14 prokMSA_id:093237 AJ581979 Pseudomonas fluorescens strain 3Re2-20 prokMSA_id:094095 AJ581980 Pseudomonas fluorescens strain 3Re2-24 prokMSA_id:093432 AJ581984 Pseudomonas reactans strain 3Re3-27 prokMSA_id:094279 AJ581985 Pseudomonas fluorescens strain 3Re4-7 prokMSA_id:093536 AJ581990 Pseudomonas fluorescens strain 3Pe2-24 prokMSA_id:094039 AJ581992 Pseudomonas orientalis strain 3Pe4-2 prokMSA_id:093986 AJ582583 clone M20-01 prokMSA_id:094424 AJ583501 Pseudomonas sp. 14-3 prokMSA_id:095266 AJ585223 Pseudomonas sp. PS-PfuK4 strain PS-PfuK4 prokMSA_id:097477 AJ585224 Pseudomonas sp. PS-IrrK1 strain PS-IrrK1 prokMSA_id:096305 AJ585225 Pseudomonas sp. PS-HalK3 strain PS-HalK3 prokMSA_id:027050 AY034841 CA12 prokMSA_id:037566 AY038046 Myxobacterium NU-2 prokMSA_id:029933 AY039422 Earthworm cast C23D1 prokMSA_id:038486 AY039441 Earthworm cast C27M1 prokMSA_id:061634 AY043558 Pseudomonas sp. 5S2.A12 prokMSA_id:061629 AY043559 Pseudomonas sp. 1S2.A7 prokMSA_id:061631 AY043562 Pseudomonas sp. 5S2.F11 prokMSA_id:061601 AY043597 Forest soil 2S2.D1 prokMSA_id:061528 AY043687 gamma clone NOW2.53WL prokMSA_id:061522 AY043694 gamma clone NOW2.WWL prokMSA_id:055252 AY043696 gamma clone NOS7.116WL prokMSA_id:061431 AY043802 gamma clone NMS8.112WL prokMSA_id:061426 AY043812 gamma clone NMS8.37WL prokMSA_id:061420 AY043817 gamma clone NMS8.7WL prokMSA_id:061290 AY043967 gamma clone N8P.01WL prokMSA_id:061289 AY043969 gamma clone N8P.02WL prokMSA_id:061284 AY043976 gamma clone S9P.01WL prokMSA_id:061283 AY043992 gamma clone N56P.03WL prokMSA_id:061282 AY043997 gamma clone N59P.10SM prokMSA_id:055442 AY043998 gamma clone N59P.12SM prokMSA_id:061279 AY043999 gamma clone N59P.14SM prokMSA_id:061278 AY044000 gamma clone N59P.15SM prokMSA_id:061281 AY044001 gamma clone N59P.02SM prokMSA_id:061277 AY044003 gamma clone N59P.07SM prokMSA_id:061276 AY044005 gamma clone S61P.02SM prokMSA_id:061273 AY044016 gamma clone N62P.08PG prokMSA_id:055905 AY044017 gamma clone N62P.09PG prokMSA_id:061274 AY044020 gamma clone S64P.03PG prokMSA_id:035838 AY055082 clone B18 prokMSA_id:024872 AY055772 Pseudomonas sp. E5 prokMSA_id:060359 AY081750 Pseudomonas sp. clone Pseud1c prokMSA_id:060357 AY081755 Pseudomonas sp. clone Pseud3b prokMSA_id:060355 AY081756 Pseudomonas sp. clone Pseud3c prokMSA_id:063052 AY122291 Denitrifying BC1 prokMSA_id:063049 AY122292 Denitrifying CA1 prokMSA_id:056676 AY122317 Denitrifying BC2 prokMSA_id:055995 AY135871 clone SG1-53 prokMSA_id:059510 AY136534 Pseudomonas sp. S-O7-11 prokMSA_id:069465 AY146656 Pseudomonas sp. K1 prokMSA_id:069658 AY146661 Pseudomonas sp. K8 prokMSA_id:075363 AY158035 Pseudomonas marginalis strain LnSQ1 prokMSA_id:075844 AY158037 Pseudomonas sp. LaSQ6 prokMSA_id:075847 AY158038 Pseudomonas marginalis strain LnSQ5 prokMSA_id:098600 AY160863 clone COB P4-8 prokMSA_id:077334 AY170455 Pseudomonas chlororaphis prokMSA_id:080120 AY193070 clone OBPB8 prokMSA_id:081581 AY193924 clone SB41 prokMSA_id:083919 AY233305 Pseudomonas putida prokMSA_id:084338 AY233306 Pseudomonas sp. UCM B-382 prokMSA_id:085927 AY233307 Pseudomonas sp. UCM B-379 prokMSA_id:085908 AY256611 DGGE band B2R-3 prokMSA_id:084157 AY256612 DGGE band S4-2 prokMSA_id:085959 AY267506 Pseudomonas sp. 4CBAJ4 prokMSA_id:086478 AY267507 Pseudomonas sp. 4CBAM prokMSA_id:083653 AY275479 Pseudomonas sp. MSB2019 prokMSA_id:084119 AY275484 Pseudomonas sp. MSB2074 prokMSA_id:084710 AY275485 Pseudomonas fulgida isolate MSB2111 prokMSA_id:082857 AY275486 Pseudomonas sp. MSB2046 prokMSA_id:088566 AY308061 Pseudomonas sp. AZ18L4 prokMSA_id:089448 AY321963 Pseudomonas rhodesiae strain MF46 prokMSA_id:089433 AY321965 Pseudomonas rhodesiae strain MF47 prokMSA_id:088730 AY321968 Pseudomonas marginalis strain MF49 prokMSA_id:091678 AY333780 Pseudomonas sp. WL1 prokMSA_id:093803 AY361949 clone P8-NTA-3 prokMSA_id:094173 AY365075 Pseudomonas sp. Ps1 prokMSA_id:093243 AY365078 Pseudomonas sp. Ps4 prokMSA_id:093992 AY365084 Pseudomonas sp. Ps10 prokMSA_id:094811 AY365086 2PS16S prokMSA_id:095068 AY365087 3PS16S prokMSA_id:094587 AY365093 9PS16S prokMSA_id:095101 AY365094 10PS16S prokMSA_id:093198 AY367013 Pseudomonas corrugata prokMSA_id:097758 AY378205 Extreme arid zone HX-IIF02 prokMSA_id:095988 AY378229 Glacial ice MS-T7-02 prokMSA_id:043375 C06640 C06640 Rat pancreatic islet cDNA Rattus norvegicus cDNA similar to mRNA prokMSA_id:008691 D84568 str. S21027. prokMSA_id:008718 U09773 clone JAP412. prokMSA_id:008735 U09827 clone JAP501. prokMSA_id:039352 U63901 Pseudomonas fluorescens prokMSA_id:023921 U63902 Pseudomonas fluorescens prokMSA_id:037518 U63903 Pseudomonas tolaasii prokMSA_id:030224 U63904 Pseudomonas tolaasii prokMSA_id:016749 U63905 Pseudomonas tolaasii prokMSA_id:045619 U63906 Pseudomonas tolaasii prokMSA_id:040171 U63907 Pseudomonas tolaasii prokMSA_id:036573 U63908 Pseudomonas tolaasii prokMSA_id:047222 U63909 Pseudomonas tolaasii prokMSA_id:029556 U63942 Pseudomonas sp. prokMSA_id:029051 U63944 Pseudomonas sp. prokMSA_id:024136 U70697 gamma OM93 prokMSA_id:008671 X91278 clone G26. prokMSA_id:008670 X91452 clone A29mn. prokMSA_id:008722 X91453 clone A30P. prokMSA_id:008719 X91517 clone K2. prokMSA_id:008738 X91518 clone K3. prokMSA_id:008731 X91612 clone G18. prokMSA_id:008737 Z69331 str. s27. prokMSA_id:008736 Z76662 Pseudomonas fluorescens DSM 50090 . prokMSA_id:042420 Z77625 2-400 C2.15 2.28.3.13.14.3 PS.CHLORORAPHIS_SUBGROUP 10 seqs 2.28.3.13.14.3.001 OTU 2 seqs prokMSA_id:097659 AJ575717 gamma clone NE04 prokMSA_id:008741 D86004 Pseudomonas chlororaphis IFO 3904 . 2.28.3.13.14.3.999 poor quality 8 seqs prokMSA_id:026528 AF353272 compost clone SSCP11d9-13 prokMSA_id:072995 D84008 Pseudomonas aureofaciens prokMSA_id:008742 D84008 Pseudomonas chlororaphis IAM 12353 . prokMSA_id:008739 D84011 Pseudomonas chlororaphis IAM 12354 . prokMSA_id:073449 D84011 Pseudomonas chlororaphis complete prokMSA_id:008743 X91285 clone G33. prokMSA_id:008744 X91288 clone G36. prokMSA_id:008740 Z77468 str. 1-700 C48. 2.28.3.13.14.4 PS.SP_2 1 seq 2.28.3.13.14.4.999 poor quality 1 seq prokMSA_id:008745 X94311 Pseudomonas sp. 2.28.3.13.14.5 PS.SYRINGAE_SUBGROUP_I 8 seqs 2.28.3.13.14.5.001 OTU 4 seqs prokMSA_id:008749 L24786 Pseudomonas syringae str. 31R-1. prokMSA_id:008748 L24786 Pseudomonas syringae str. 31R-1. prokMSA_id:008747 L24788 Pseudomonas fluorescens str. MS1650. prokMSA_id:008746 L24788 Pseudomonas fluorescens str. MS1650. 2.28.3.13.14.5.999 poor quality 4 seqs prokMSA_id:045351 AF000290 marine prokMSA_id:028816 AF000292 marine prokMSA_id:048459 AF364936 clone clL9b prokMSA_id:008750 D26260 soil from soybean field clone FIE8. 2.28.3.13.14.6 PS.FLUORESCENS 1 seq 2.28.3.13.14.6.999 poor quality 1 seq prokMSA_id:008751 D11188 Pseudomonas fluorescens IAM 12022 . 2.28.3.13.14.7 PS.TAETROLENS_SUBGROUP 33 seqs 2.28.3.13.14.7.001 OTU 19 seqs prokMSA_id:041050 AB041885 Pseudomonas sp. E-3 prokMSA_id:077732 AB074627 gamma clone:APe2_82 prokMSA_id:078081 AB074630 gamma clone:APe4_13 prokMSA_id:027074 AF094733 Pseudomonas fragi prokMSA_id:073611 AF205134 Pseudomonas sp. 'FSL D1-022' prokMSA_id:042700 AF376458 ckncm225-F4M.2D7 prokMSA_id:069710 AF513430 Pseudomonas sp. Pect4 prokMSA_id:069290 AF513431 Pseudomonas sp. Pect5 prokMSA_id:019320 AJ252576 Agricultural soil isolate SI-8 prokMSA_id:073856 AJ288146 Pseudomonas sp. isolate SK-1-3-1 prokMSA_id:047897 AJ419674 Pseudomonas sp. 2N1-1 prokMSA_id:089274 AJ576247 Pseudomonas syringae isolate Lz4W prokMSA_id:081514 AY195842 Pseudomonas fragi prokMSA_id:082986 AY263480 Pseudomonas sp. WR7#2 prokMSA_id:092742 AY342004 Pseudomonas sp. CA18 prokMSA_id:092825 AY342005 Pseudomonas sp. CL16 prokMSA_id:091748 AY344380 clone K2-30-10 prokMSA_id:008753 D84027 Pseudomonas taetrolens IAM 1653 . prokMSA_id:073652 D84027 Pseudomonas taetrolens complete 2.28.3.13.14.7.999 poor quality 14 seqs prokMSA_id:008755 AB021395 Pseudomonas lundensis ATCC 49968. prokMSA_id:008756 AB021413 Pseudomonas fragi IFO 3458. prokMSA_id:073352 AF227841 Pseudomonas sp. 63596 prokMSA_id:068970 AF280962 clone JS23 prokMSA_id:036336 AF299363 Pseudomonas lundensis prokMSA_id:046120 AF320334 gamma hs2_31 prokMSA_id:024932 AF389448 clone SRS62DBA39 prokMSA_id:059202 AJ344222 Pseudomonas sp. EJP 115 isolate EJP 115 prokMSA_id:028011 AJ419641 clone R02 prokMSA_id:077074 AJ428148 isolate band i-b5 prokMSA_id:076946 AJ428181 isolate band ao-b3 prokMSA_id:020021 AY037741 earthworm cast clone C139 prokMSA_id:095108 AY365105 21PS16S prokMSA_id:008752 Z48274 Pseudomonas sp. str. S1.26. 2.28.3.13.14.8 PS.SPP_SUBGROUP 4 seqs 2.28.3.13.14.8.999 poor quality 4 seqs prokMSA_id:008759 Z48277 Pseudomonas sp. str. S1.51. prokMSA_id:008757 Z48278 Pseudomonas sp. str. S1.6. prokMSA_id:008758 Z48284 Pseudomonas sp. str. S2.5. prokMSA_id:008760 Z48428 Pseudomonas sp. str. S3.9. 2.28.3.13.14.9 PS.AZOTOFORMANS_SUBGROUP 145 seqs 2.28.3.13.14.9.003 OTU 83 seqs prokMSA_id:008776 AB004760 unnamed organism. prokMSA_id:008773 AB015555 str. BD3-15. prokMSA_id:077615 AB074632 gamma clone:APe4_55 prokMSA_id:008774 AF006503 Pseudomonas pseudomonad ps.3. prokMSA_id:008778 AF057645 Pseudomonas libaniensis CIP 105460. prokMSA_id:008765 AF074384 Pseudomonas gessardii CIP 105469. prokMSA_id:029039 AF094729 Pseudomonas fluorescens strain ATCC 17556 prokMSA_id:008768 AF159678 clone HstpL59. prokMSA_id:008771 AF170731 Pseudomonas QSSC1-9 str. QSSC1-9. prokMSA_id:073710 AF205138 Pseudomonas sp. 'FSL R1-195' prokMSA_id:036380 AF214134 Pseudomonas sp. P71408 prokMSA_id:041990 AF228367 Pseudomonas fluorescens bv. C prokMSA_id:033989 AF255337 Pseudomonas reactans prokMSA_id:048111 AF267911 Pseudomonas synxantha prokMSA_id:019147 AF277494 Pseudomonas SIC.7153 prokMSA_id:049299 AF277565 Pseudomonas SIC.9065 prokMSA_id:034824 AF320989 Pseudomonas tolaasii strain NCPPB 2193 prokMSA_id:046670 AF326356 Pseudomonas sp. G2 prokMSA_id:024361 AF376232 ckncm328-B6-64 prokMSA_id:072883 AF388208 Pseudomonas sp. NZ064 prokMSA_id:070601 AF388209 Pseudomonas sp. NZ066 prokMSA_id:036001 AF448263 clone DJAT-23 prokMSA_id:027387 AF451270 Pseudomonas sp. E102 prokMSA_id:079709 AF468391 Arctic sea ice ARK10061 prokMSA_id:079739 AF468404 Arctic sea ice ARK9971 prokMSA_id:072676 AF479375 Glacial ice M3C4.1K-B34 prokMSA_id:071204 AF511512 Pseudomonas sp. SoO1 prokMSA_id:061816 AF529346 gamma clone CLs104 prokMSA_id:050036 AJ252664 Agricultural soil clone SC-I-88 prokMSA_id:040392 AJ291839 Pseudomonas sp. IrT-R5M2-56 prokMSA_id:028240 AJ291840 Pseudomonas sp. IrT-R5M2-58 prokMSA_id:023806 AJ291841 Pseudomonas sp. IrT-R5M2-32 prokMSA_id:032689 AJ296562 GR-296.II.35 clone GR-296.II.35 prokMSA_id:021356 AJ301568 gamma GR-296.I-27 prokMSA_id:033184 AJ308303 Pseudomonas fluorescens strain Biotype A prokMSA_id:088526 AJ576245 Pseudomonas putida isolate 9BW prokMSA_id:094747 AJ583186 gamma- clone S15D-MN16 prokMSA_id:032794 AY014801 Pseudomonas sp. NZ007 prokMSA_id:051031 AY014815 Pseudomonas sp. NZ065 prokMSA_id:052401 AY014823 Pseudomonas sp. NZ106 prokMSA_id:072737 AY014824 Pseudomonas sp. NZ108 prokMSA_id:073740 AY014825 Pseudomonas sp. NZ111 prokMSA_id:073522 AY014827 Pseudomonas sp. NZ113 prokMSA_id:070213 AY014828 Pseudomonas sp. NZ122 prokMSA_id:038915 AY014829 Pseudomonas sp. NZ124 prokMSA_id:023880 AY037662 earthworm cast clone C003 prokMSA_id:043011 AY037676 earthworm cast clone C019 prokMSA_id:040558 AY037689 earthworm cast clone C035 prokMSA_id:041421 AY037698 earthworm cast clone C045 prokMSA_id:025678 AY037700 earthworm cast clone C048 prokMSA_id:032117 AY037704 earthworm cast clone C053 prokMSA_id:042453 AY037750 earthworm cast clone C148 prokMSA_id:024147 AY038716 clone TAF-A30 prokMSA_id:074032 AY038717 clone TAF-A224 prokMSA_id:073367 AY038718 clone TAF-A227 prokMSA_id:021756 AY053484 AT425_EubC3 prokMSA_id:067506 AY092072 Pseudomonas fluorescens strain 302 prokMSA_id:063472 AY121983 Pseudomonas sp. RA12 prokMSA_id:059919 AY133072 gamma clone ccs242 prokMSA_id:060842 AY135932 clone SG2-149 prokMSA_id:098307 AY151820 Pseudomonas sp. PM2 prokMSA_id:081717 AY216460 clone KM94 prokMSA_id:084565 AY226301 Pseudomonas sp. clone DBBB-50 prokMSA_id:084439 AY277894 Pseudomonas reactans prokMSA_id:088332 AY308044 Pseudomonas sp. AZ18R3 prokMSA_id:090660 AY308045 Pseudomonas sp. AZ18R5 prokMSA_id:090111 AY308049 Pseudomonas sp. AZ22R11 prokMSA_id:089735 AY308051 Pseudomonas sp. AZ22R2 prokMSA_id:088541 AY308052 Pseudomonas sp. AZ22R3 prokMSA_id:089476 AY308054 Pseudomonas sp. AZ22R9 prokMSA_id:088851 AY321588 Pseudomonas fluorescens prokMSA_id:091775 AY345362 Ph16 prokMSA_id:091856 AY345369 L3_Loihi prokMSA_id:008767 D84009 Pseudomonas azotoformans IAM 1603 . prokMSA_id:070929 D84009 Pseudomonas azotoformans complete prokMSA_id:008764 D84017 Pseudomonas mucidolens IAM 12406 . prokMSA_id:072330 D84017 Pseudomonas mucidolens complete prokMSA_id:008775 D84025 Pseudomonas synxantha IAM 12356. prokMSA_id:071596 D84025 Pseudomonas synxantha complete prokMSA_id:008762 L24790 Pseudomonas fluorescens ATCC 13525 . prokMSA_id:008769 U85868 ACAM 213. prokMSA_id:008770 U85869 Pseudomonas IC038 str. IC038. prokMSA_id:008777 X86626 unnamed organism. 2.28.3.13.14.9.004 OTU 1 seq prokMSA_id:008766 L24790 Pseudomonas fluorescens ATCC 13525 . 2.28.3.13.14.9.005 OTU 5 seqs prokMSA_id:031060 AJ400355 marine ZD0424 prokMSA_id:068989 AY033301 gamma MB11B11 ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:092173 AY354846 gamma clone PLY-P2-18 prokMSA_id:096014 AY386340 Marine gamma HTCC2120 prokMSA_id:095428 AY386341 Marine gamma HTCC2121 2.28.3.13.14.9.006 OTU 1 seq prokMSA_id:043313 AF448275 clone DJAT-217 2.28.3.13.14.9.007 OTU 1 seq prokMSA_id:043655 AF328179 clone KS30 2.28.3.13.14.9.008 OTU 1 seq prokMSA_id:044307 AF424171 gamma MERTZ_21CM_217 2.28.3.13.14.9.009 OTU 1 seq prokMSA_id:046424 AF354611 gamma Arctic96A-14 2.28.3.13.14.9.010 OTU 2 seqs prokMSA_id:062460 AY102028 Gamma HTCC234 prokMSA_id:097038 AY386335 Marine gamma HTCC2207 2.28.3.13.14.9.011 OTU 1 seq prokMSA_id:064971 AY095627 gamma OS3.5K-14 2.28.3.13.14.9.012 OTU 1 seq prokMSA_id:066497 AY100591 clone cvf75065 2.28.3.13.14.9.013 OTU 1 seq prokMSA_id:077535 AY150578 Symbiont LP3 of Lyrodus pedicellatus small subunit 2.28.3.13.14.9.014 OTU 1 seq prokMSA_id:078318 AY171345 clone s28 2.28.3.13.14.9.015 OTU 1 seq prokMSA_id:092209 AJ581349 gamma clone E01-9C-12 2.28.3.13.14.9.016 OTU 1 seq prokMSA_id:092435 AY354847 gamma clone PLY-P2-23 2.28.3.13.14.9.017 OTU 3 seqs prokMSA_id:098165 AY375145 clone D53 prokMSA_id:098290 AY375146 clone D6 prokMSA_id:096709 AY375151 clone D78 2.28.3.13.14.9.018 OTU 1 seq prokMSA_id:096977 AY375067 clone B11 2.28.3.13.14.9.019 OTU 1 seq prokMSA_id:098556 AY211759 gamma clone GoM GC234 662S5 2.28.3.13.14.9.020 OTU 1 seq prokMSA_id:098587 AY386338 Marine gamma HTCC2290 2.28.3.13.14.9.999 poor quality 38 seqs prokMSA_id:028636 AF175584 WJGRT-6 prokMSA_id:037842 AF277519 Pseudomonas SIC.9311 prokMSA_id:051423 AF280960 clone JS21 prokMSA_id:024139 AF376418 ckncm185-F3M.1G6 prokMSA_id:031876 AF389450 clone SRS62DBA44 prokMSA_id:070253 AF408899 Pseudomonas sp. NZHA6 prokMSA_id:026269 AF448277 clone DJAT-17 prokMSA_id:017778 AF448278 clone DJAT-434 prokMSA_id:035637 AF451264 Pseudomonas sp. E142 prokMSA_id:026237 AF451274 Pseudomonas sp. E140 prokMSA_id:035438 AJ314687 clone sl116 prokMSA_id:034212 AJ416664 gamma clone env.S053 prokMSA_id:080515 AJ437114 clone b7-01 prokMSA_id:080022 AJ437128 clone lb7-01 prokMSA_id:079026 AJ534859 Pseudomonas sp. DW118 isolate DW118 prokMSA_id:076804 AJ535755 Pseudomonas sp. ED105-1 isolate ED105-1 prokMSA_id:078593 AJ536421 Pseudomonas sp. 7:3 isolate 7:3 564BP prokMSA_id:051192 AY037570 soil clone S023 prokMSA_id:022388 AY037696 earthworm cast clone C043 prokMSA_id:037607 AY037718 earthworm cast clone C069 prokMSA_id:040864 AY037744 earthworm cast clone C142 prokMSA_id:042378 AY037746 earthworm cast clone C144 prokMSA_id:027544 AY037761 earthworm cast clone C159 prokMSA_id:071158 AY038715 clone TAF-A10 prokMSA_id:037982 AY039437 Soil S94D1 prokMSA_id:080047 AY191878 Pseudomonas sp. clone B3 prokMSA_id:094252 AY365080 Pseudomonas sp. Ps6 prokMSA_id:093620 AY365083 Pseudomonas sp. Ps9 prokMSA_id:094734 AY365095 11PS16S prokMSA_id:094383 AY365096 12PS16S prokMSA_id:094826 AY365100 16PS16S prokMSA_id:094680 AY365103 19PS16S prokMSA_id:094350 AY365106 22PS16S prokMSA_id:025002 U63947 Pseudomonas sp. prokMSA_id:008772 X86629 unnamed organism. prokMSA_id:008761 X91287 Bangombe boreholes at depth of 5-105m clone G35. prokMSA_id:008779 X91454 clone A31m. prokMSA_id:008763 Z48290 Pseudomonas sp. str. S3.6. 2.28.3.13.14.10 PS.SYRINGAE_SUBGROUP_II 2 seqs 2.28.3.13.14.10.001 OTU 2 seqs prokMSA_id:008781 L24787 Pseudomonas syringae str. A501. prokMSA_id:008780 L24787 Pseudomonas syringae str. A501. 2.28.3.13.14.11 PS.SP_STR_S2_1 1 seq 2.28.3.13.14.11.999 poor quality 1 seq prokMSA_id:008782 Z48279 Pseudomonas sp. str. S2.1. 2.28.3.13.14.12 ENVIRONMENTAL_CLONE_A27U 1 seq 2.28.3.13.14.12.999 poor quality 1 seq prokMSA_id:008783 X91450 clone A27u. 2.28.3.13.15 PS.AGARICI_SUBGROUP 80 seqs 2.28.3.13.15.001 OTU 1 seq prokMSA_id:008794 AF006502 Pseudomonas pseudomonad ps.1. 2.28.3.13.15.003 OTU 1 seq prokMSA_id:008791 AF142863 clone BURTON-45. 2.28.3.13.15.004 OTU 1 seq prokMSA_id:008790 U70693 clone OM10. 2.28.3.13.15.010 OTU 36 seqs prokMSA_id:020153 AB060973 Pseudomonas putida prokMSA_id:062946 AB079094 Pseudomonas putida strain:YTK10 prokMSA_id:055844 AB079096 Pseudomonas sp. YTK20 prokMSA_id:078684 AB088755 Pseudomonas sp. K15 prokMSA_id:078485 AB088756 Pseudomonas sp. K22 prokMSA_id:079576 AB088844 Pseudomonas sp. K23 prokMSA_id:086855 AB109886 Pseudomonas graminis strain: KF701 prokMSA_id:073624 AF094730 Pseudomonas fluorescens strain ATCC 17573 prokMSA_id:024232 AF205137 Pseudomonas sp. 'FSL R1-057' prokMSA_id:037815 AF332511 Pseudomonas gingeri strain NCPPB 3146 prokMSA_id:065392 AF511513 Pseudomonas graminis isolate SaU5 prokMSA_id:065390 AF511514 Pseudomonas graminis isolate HhSaOsb prokMSA_id:061844 AF529320 gamma clone CLi109 prokMSA_id:008793 AJ011504 str. BKME-9. prokMSA_id:051733 AJ308298 Pseudomonas agarici isolate ICMP 2656 prokMSA_id:097185 AJ575715 gamma clone SW28 prokMSA_id:073648 AY014809 Pseudomonas sp. NZ043 prokMSA_id:030528 AY014810 Pseudomonas sp. NZ047 prokMSA_id:026064 AY014812 Pseudomonas sp. NZ059 prokMSA_id:071222 AY014816 Pseudomonas sp. NZ092 prokMSA_id:074827 AY014826 Pseudomonas sp. NZ112 prokMSA_id:021829 AY030316 Pseudomonas graminis strain JPL-8 prokMSA_id:032635 AY050495 Pseudomonas corrugata SB4 prokMSA_id:065527 AY095441 yard-trimming-compost clone S-83 prokMSA_id:060438 AY131223 Pseudomonas sp. Fa4 prokMSA_id:060439 AY131224 Pseudomonas sp. Fa20 prokMSA_id:076107 AY150920 gamma clone WYO4bC prokMSA_id:078571 AY152673 Pseudomonas rhizosphaerae complete prokMSA_id:090419 AY297752 Pseudomonas putida isolate Fmc prokMSA_id:093773 AY364537 Pseudomonas lutea strain OK2 prokMSA_id:008786 D84005 Pseudomonas agarici ATCC 25941 . prokMSA_id:073990 D84005 Pseudomonas agarici prokMSA_id:008788 D85995 Pseudomonas putida ATCC 17522. prokMSA_id:008789 D85999 Pseudomonas putida IFO 3738. prokMSA_id:008787 Y11150 Pseudomonas graminis str. P 294/08 DSM 11363 . prokMSA_id:008784 Z76652 Pseudomonas agarici LMG 2112 . 2.28.3.13.15.011 OTU 1 seq prokMSA_id:008785 AF142897 clone EKHO-14. 2.28.3.13.15.012 OTU 1 seq prokMSA_id:017511 AF424124 gamma MERTZ_2CM_302 2.28.3.13.15.013 OTU 1 seq prokMSA_id:021399 AF195457 gamma kpj394f 2.28.3.13.15.014 OTU 1 seq prokMSA_id:027138 AF411855 Pseudomonas sp. 5B 2.28.3.13.15.015 OTU 1 seq prokMSA_id:045928 AF422620 clone t051 2.28.3.13.15.016 OTU 1 seq prokMSA_id:086422 AY222301 gamma clone ST01-SN4A 2.28.3.13.15.017 OTU 1 seq prokMSA_id:088175 AY191342 Pseudomonas sp. isolate ODP1176A6H_13_B 2.28.3.13.15.999 poor quality 34 seqs prokMSA_id:040586 AB011752 gamma strain: G21003 prokMSA_id:035657 AF000645 marine pD-17 prokMSA_id:031855 AF055232 marine pC2-18 prokMSA_id:045182 AF114687 gamma DCM-FREE-36 prokMSA_id:017242 AF175592 WJGRT-24 prokMSA_id:051824 AF332315 clone T26-35 prokMSA_id:068245 AF365475 clone BM89MF1BF12 prokMSA_id:068086 AF365657 clone BM89DS6BbB2 prokMSA_id:026121 AF379027 clone EV13 prokMSA_id:041512 AF408867 Pseudomonas sp. NZWM3 prokMSA_id:033639 AF408868 Pseudomonas sp. NZWM2 prokMSA_id:072010 AF408890 Pseudomonas sp. NZLN7 prokMSA_id:048591 AF424754 Cellvibrio sp. clone M4sb10 prokMSA_id:031705 AF429012 clone CR99-35-54 prokMSA_id:040366 AF469323 gamma clone CTD18B prokMSA_id:057837 AF546954 clone E5-46-BH1-12/7/98-027 prokMSA_id:051376 AJ005651 gamma pseudomonas isolate Clo 74 prokMSA_id:027181 AJ007539 Pseudomonas sp. strain NN016958 prokMSA_id:030369 AJ232856 clone LRS14 prokMSA_id:039465 AJ232866 clone LRE7 prokMSA_id:033381 AJ232867 clone LRE15 prokMSA_id:039263 AJ314682 clone s5 prokMSA_id:059270 AJ508696 Pseudomonas putida isolate MBRG 4.5 prokMSA_id:081516 AJ550433 clone AS 66 prokMSA_id:093896 AJ581645 gamma clone LL5 5' region prokMSA_id:037870 AY034842 CA13 prokMSA_id:053440 AY039420 Earthworm burrow B4D1 prokMSA_id:064285 AY040352 Pseudomonas sp. LMG 20573 prokMSA_id:084435 AY214776 beta clone BB-1-C5 prokMSA_id:086594 AY271762 Pseudomonas sp. prokMSA_id:085082 AY275481 Pseudomonas sp. MSB2084 prokMSA_id:084876 AY275482 Pseudomonas sp. MSB2071 prokMSA_id:086610 AY275487 Pseudomonas sp. MSB2138 prokMSA_id:008792 Z36532 Pseudomonas putida str. Isolate Env 2.9. 2.28.3.14 NUCLEAR_INCLUSION_X_BACTERIUM 2 seqs 2.28.3.14.999 poor quality 2 seqs prokMSA_id:074247 AH001812 sp. nuclear inclusion X NIX seqment 1 prokMSA_id:008795 M94380 unnamed organism. 2.28.3.15 ENVIRONMENTAL_CLONE_SAR92_GROUP 10 seqs 2.28.3.15.001 OTU 1 seq prokMSA_id:060652 AF406519 alpha clone AEGEAN_169 2.28.3.15.999 poor quality 9 seqs prokMSA_id:052288 AF000285 marine prokMSA_id:018174 AF000289 marine prokMSA_id:056319 AF289873 Kmlps0-17 prokMSA_id:069026 AF289905 alpha Kmlps6-7 prokMSA_id:069025 AF289913 alpha Kmlps6-18 prokMSA_id:069024 AF289916 alpha Kmlps6-23 prokMSA_id:008797 L35466 clone SAR 125. prokMSA_id:008798 M63811 Sargasso Sea clone SAR 92. prokMSA_id:008796 X89341 clone 7911. 2.28.3.16 MRB.HYDROCARBONOCLASTICUS_GROUP 230 seqs 2.28.3.16.001 OTU 18 seqs prokMSA_id:008821 AB010868 str. HTB148. prokMSA_id:008815 AB019148 Marinobacter hydrocarbonoclasticus str. 179 ATCC 27132. prokMSA_id:008816 AB021372 Marinobacter hydrocarbonoclasticus str. 179 ATCC 27132. prokMSA_id:067732 AB062154 clone:pBSB3.14 prokMSA_id:067729 AB062156 clone:pBSB3.36 prokMSA_id:056136 AB072719 clone:pHAuB-A prokMSA_id:080080 AB089804 Marinobacter sp. HB7 prokMSA_id:053446 AF190218 Marinobacter RS29A27 prokMSA_id:070319 AF220332 O18F3 prokMSA_id:035932 AF440719 gamma ARCT1-44 prokMSA_id:060388 AF513451 Alteromonadaceae LA34A prokMSA_id:008807 AJ000726 Marinobacter aquaeolei str. VT8. prokMSA_id:075064 AJ519788 Marinobacter sp. R2 prokMSA_id:078569 AY180101 Marinobacter excelentus strain KMM 3809 prokMSA_id:091462 AY345358 R10CA prokMSA_id:091236 AY345466 K54 prokMSA_id:008818 U61848 Marinobacter CAB str. CAB. prokMSA_id:008817 Y16735 Marinobacter hydrocarbonoclasticus. 2.28.3.16.002 OTU 1 seq prokMSA_id:008820 AF148811 Marinobacter articus. 2.28.3.16.003 OTU 51 seqs prokMSA_id:021222 AF173969 Marinobacter aquaeolei prokMSA_id:008809 AF199440 Marinobacter DS40M8 str. DS40M8. prokMSA_id:016390 AF212207 Marinobacter sp. Aplume1.1727a complete prokMSA_id:048682 AF212208 Marinobacter sp. Asw1.1741a complete prokMSA_id:031320 AF212209 Marinobacter sp. Asw2.1747a complete prokMSA_id:047395 AF212210 Marinobacter sp. Splume1.1802c complete prokMSA_id:048119 AF212211 Marinobacter sp. Splume2.1814c complete prokMSA_id:031627 AF212213 Marinobacter sp. Splume3.1825c complete prokMSA_id:021327 AF237685 Marinobacter sp. prokMSA_id:073865 AF262736 Endocytic Noc10 prokMSA_id:073308 AF262737 Endocytic Noc11 prokMSA_id:073315 AF262739 Endocytic Noc13 prokMSA_id:070060 AF262742 Endocytic Noc16 prokMSA_id:022385 AF295032 Marinobacter sp. NCE312 prokMSA_id:025450 AF348722 gamma clone MPD-48 prokMSA_id:020197 AF359552 Marine ATAM407_2035 prokMSA_id:048708 AF440699 gamma ARCT1-5 prokMSA_id:080393 AF468307 clone ARKICE-88 prokMSA_id:080950 AF468311 clone ARKICE-137 prokMSA_id:080856 AF468316 clone ARKICE-52 prokMSA_id:060391 AF513448 Alteromonadaceae LA13 prokMSA_id:008819 AJ000647 Marinobacter PCOB-2 str. PCOB-2. prokMSA_id:061964 AJ244726 Marinobacter sp. V4.BE.29 marine isolate prokMSA_id:026877 AJ294359 Marinobacter sp. 407-13 strain 407-13 prokMSA_id:071127 AJ302707 Marinobacter sp. ME108 prokMSA_id:085565 AJ542653 Marinobacter sp. 4301-10/2 isolate 4301-10/2 prokMSA_id:086684 AJ542659 Marinobacter sp. 4318-8/4 isolate 4318-8/4 prokMSA_id:083270 AJ542660 Marinobacter sp. 4318-8/7 isolate 4318-8/7 prokMSA_id:093980 AJ551128 Marinobacter sp. es7 isolate es7 prokMSA_id:083574 AJ557841 Marine arctic deep-sea FF7b prokMSA_id:085559 AJ557843 Marine arctic deep-sea FB9 prokMSA_id:083771 AJ557844 Marine arctic deep-sea FC10 prokMSA_id:084428 AJ557846 Marine arctic deep-sea FC8a prokMSA_id:084377 AJ557851 Marine arctic deep-sea FH8 prokMSA_id:084236 AJ557854 Marine arctic deep-sea HF12 prokMSA_id:086527 AJ557861 Marine arctic deep-sea HK13 prokMSA_id:082214 AY147906 Marinobacter lipolyticus prokMSA_id:085901 AY157973 Fe-oxidizing FO8 prokMSA_id:082024 AY165592 Arctic sea ice clone ARKXV/1-140 prokMSA_id:082079 AY165595 Arctic sea ice clone ARKXV/1-157 prokMSA_id:082027 AY165596 Arctic sea ice clone ARKXV/1-52 prokMSA_id:082281 AY165597 Arctic sea ice clone ARKXV/1-34 prokMSA_id:081723 AY196982 Marinobacter sp. 3030dQ prokMSA_id:086347 AY226241 Marinobacter sp. clone BBBB-3 prokMSA_id:082564 AY241550 Marine HP6 prokMSA_id:086235 AY241552 Marine HP15 prokMSA_id:086612 AY241554 Marine HP36 prokMSA_id:091507 AY345368 L5 prokMSA_id:098330 AY394873 Marinobacter sp. EPR 15 prokMSA_id:095336 AY394878 Marinobacter sp. EPR 21 prokMSA_id:095295 AY394884 Marinobacter sp. EPR 35 2.28.3.16.004 OTU 1 seq prokMSA_id:008811 AB021383 Pseudomonas halophila DSM 3050. 2.28.3.16.005 OTU 2 seqs prokMSA_id:008810 AB021682 str. MBIC3957. prokMSA_id:024515 AF195410 Hahella chejuensis strain KCTC 2396 2.28.3.16.006 OTU 2 seqs prokMSA_id:008806 AB026946 Marinobacter NK-1 str. NK-1. prokMSA_id:038286 AJ296567 GR-Sh1-128 clone GR-Sh1-128 2.28.3.16.007 OTU 4 seqs prokMSA_id:080143 AB089803 Marinobacter sp. HS7 prokMSA_id:008805 AF142911 Marinobacter ORGANIC-9. prokMSA_id:096869 AY211666 gamma clone GoM GC234 007E prokMSA_id:083309 AY226254 Marinobacter sp. clone BBBB-50 2.28.3.16.008 OTU 1 seq prokMSA_id:008804 U85867 Marinobacter sp. str. IC065. 2.28.3.16.009 OTU 1 seq prokMSA_id:008803 U85866 Marinobacter sp. str. IC184. 2.28.3.16.010 OTU 1 seq prokMSA_id:008802 U85865 Marinobacter sp. str. IC180. 2.28.3.16.014 OTU 2 seqs prokMSA_id:020468 AF264683 Marinobacter sp. MR-1 prokMSA_id:029755 AF264687 Marinobacter sp. MR-6 2.28.3.16.015 OTU 1 seq prokMSA_id:020696 AF238495 Marinobacter sp. 2.28.3.16.016 OTU 2 seqs prokMSA_id:073167 AF288157 Marinobacter lutaoensis prokMSA_id:025426 AJ292528 Marinobacter sp. Trimyema-2 isolate 2 2.28.3.16.017 OTU 1 seq prokMSA_id:022673 AJ295154 Oleiphilus messinensis isolate ME102 2.28.3.16.018 OTU 1 seq prokMSA_id:024422 AF333528 gamma clone R180 2.28.3.16.019 OTU 1 seq prokMSA_id:059152 AY136115 Marinobacter sp. MED91 2.28.3.16.020 OTU 1 seq prokMSA_id:059145 AY136121 Marinobacter sp. MED106 2.28.3.16.021 OTU 1 seq prokMSA_id:027082 AF343953 Marine NBF32 2.28.3.16.022 OTU 2 seqs prokMSA_id:032995 AF348713 gamma clone MPD-18 prokMSA_id:045195 AF348724 gamma clone MPD-50 2.28.3.16.023 OTU 1 seq prokMSA_id:035205 AF479689 Marinobacter marinus strain SW-45 2.28.3.16.024 OTU 1 seq prokMSA_id:036221 AJ252619 Agricultural soil clone SC-I-16 2.28.3.16.025 OTU 1 seq prokMSA_id:037115 AJ292527 Marinobacter sp. Trimyema-1 isolate 1 2.28.3.16.026 OTU 1 seq prokMSA_id:037995 AB049744 Halomonas sp. Loihi-Chm-4 2.28.3.16.027 OTU 1 seq prokMSA_id:043550 AF419288 antarctic soil clone bh8.50 2.28.3.16.032 OTU 1 seq prokMSA_id:046558 AB049747 Pseudomonas sp. Loihi-Chm-7 2.28.3.16.033 OTU 1 seq prokMSA_id:047061 AB041305 ECS35 2.28.3.16.034 OTU 1 seq prokMSA_id:055556 AB062158 clone:pBSB4.12 2.28.3.16.035 OTU 1 seq prokMSA_id:052685 U70695 gamma OM59 2.28.3.16.036 OTU 1 seq prokMSA_id:060385 AF513454 Alteromonadaceae LA50 2.28.3.16.037 OTU 1 seq prokMSA_id:060644 AF406527 gamma clone AEGEAN_133 2.28.3.16.038 OTU 2 seqs prokMSA_id:061963 AJ244727 Marinobacter-like sp. V4.MS.21 prokMSA_id:061967 AJ244728 Marinobacter-like sp. V4.MS.24 2.28.3.16.039 OTU 1 seq prokMSA_id:066408 AF506965 Halophilic 1DH37b 2.28.3.16.040 OTU 1 seq prokMSA_id:066917 AJ306784 clone SHA-37 2.28.3.16.041 OTU 1 seq prokMSA_id:066955 AF482686 Marinobacter sp. SBS 2.28.3.16.042 OTU 1 seq prokMSA_id:068294 AF361676 clone MN13BT4-53 2.28.3.16.043 OTU 1 seq prokMSA_id:068303 AF361665 clone MN12BT3-32 2.28.3.16.044 OTU 1 seq prokMSA_id:070626 AJ318139 gamma clone BIhi16 2.28.3.16.046 OTU 18 seqs prokMSA_id:080672 AF468230 clone ARKCH2Br2-12 prokMSA_id:080169 AF468257 clone ARKDMS-76 prokMSA_id:079693 AF468286 clone ARKIA-100 prokMSA_id:081032 AF468312 clone ARKICE-140 prokMSA_id:080774 AF468319 clone ARKICE-18 prokMSA_id:079688 AF468400 Arctic sea ice ARK10228 prokMSA_id:080459 AF468401 Arctic sea ice ARK10244 prokMSA_id:079868 AF468402 Arctic sea ice ARK10251 prokMSA_id:079964 AF468403 Arctic sea ice ARK10296 prokMSA_id:045418 AJ429499 Marinobacter sp. 2sq31 strain 2sq31 prokMSA_id:059259 AJ439500 Marinobacter sp. 2Asq64 strain 2Asq64 prokMSA_id:082935 AJ441002 Antarctic R-9035 strain R-9035 prokMSA_id:081478 AY165590 Arctic sea ice clone ARKXV/1-103 prokMSA_id:081583 AY167267 Marinobacter sp. ANT8277 prokMSA_id:082613 AY224515 Alteromonadaceae prokMSA_id:008799 U14584 Flectobacillus sp. str. S36-Wgv1. prokMSA_id:008800 U85863 Marinobacter sp. str. IC022. prokMSA_id:008801 U85864 Marinobacter sp. str. IC032. 2.28.3.16.047 OTU 1 seq prokMSA_id:079903 AY193163 clone BTM28 2.28.3.16.048 OTU 1 seq prokMSA_id:080231 AF468398 Arctic sea ice associated ARK10148 2.28.3.16.049 OTU 1 seq prokMSA_id:080357 AF468320 clone ARKICE-3 2.28.3.16.050 OTU 1 seq prokMSA_id:080484 AF468318 clone ARKICE-53 2.28.3.16.051 OTU 1 seq prokMSA_id:080493 AB094898 clone:OHKB7.42 2.28.3.16.052 OTU 1 seq prokMSA_id:080533 AF468259 clone ARKDMS-57 2.28.3.16.053 OTU 1 seq prokMSA_id:080976 AF468314 clone ARKICE-90 2.28.3.16.054 OTU 1 seq prokMSA_id:081012 AF468315 clone ARKICE-144 2.28.3.16.055 OTU 1 seq prokMSA_id:081942 AY165593 Arctic sea ice clone ARKXV/1-96 2.28.3.16.056 OTU 2 seqs prokMSA_id:082957 AJ557845 Marine arctic deep-sea FE8 prokMSA_id:084025 AJ557849 Marine arctic deep-sea HG11 2.28.3.16.057 OTU 1 seq prokMSA_id:088310 AY223757 Fe-oxidizing FO6 2.28.3.16.058 OTU 1 seq prokMSA_id:088805 AJ567576 Marinobacter sp. clone MBAE14 2.28.3.16.059 OTU 1 seq prokMSA_id:091491 AY345367 L7 2.28.3.16.999 poor quality 85 seqs prokMSA_id:080045 AB089805 Marinobacter sp. HS9 prokMSA_id:008808 AF001374 Marinobacter SW51 str. SW51. prokMSA_id:032407 AF025961 Marinobacter sp. AND5 prokMSA_id:037706 AF114523 gamma 400m-ATT-16 complete prokMSA_id:052830 AF141437 gamma clone CRE-FL4 prokMSA_id:032575 AF141438 gamma clone CRE-FL7 prokMSA_id:049028 AF141477 gamma clone CRE-FL61 prokMSA_id:038607 AF141489 gamma clone CRE-FL76 prokMSA_id:034195 AF141490 gamma clone CRE-FL77 prokMSA_id:047886 AF141493 gamma clone CRE-FL80 prokMSA_id:045065 AF141494 gamma clone CRE-PA2 prokMSA_id:044163 AF141503 gamma clone CRE-PA16 prokMSA_id:041521 AF141527 gamma clone CRE-PA49 prokMSA_id:017996 AF141553 gamma clone CRE-PA86 prokMSA_id:040041 AF141554 gamma clone CRE-PA87 prokMSA_id:031999 AF141555 gamma clone CRE-PA88 prokMSA_id:072080 AF195462 Gamma kbc01 prokMSA_id:050918 AF211276 gamma MT33 prokMSA_id:032901 AF211281 Marinobacter MT44 prokMSA_id:044297 AF261056 Marinobacter sp. SKA35 prokMSA_id:070532 AF262738 Endocytic Noc12 prokMSA_id:069842 AF264686 Marinobacter sp. MR-5 prokMSA_id:036656 AF287040 gamma EC-A38 prokMSA_id:026919 AF300977 BSislt10 prokMSA_id:051540 AF321061 Marinobacter aquaeolei strain U13 prokMSA_id:034274 AF321062 Marinobacter sp. U37 prokMSA_id:051593 AF321063 Marinobacter sp. U1 prokMSA_id:030177 AF332268 clone C12-36 prokMSA_id:053494 AF332284 clone C12-33 prokMSA_id:068289 AF361680 clone MN13BT4-61 prokMSA_id:068073 AF365670 clone BM89DS6BbF10 prokMSA_id:067932 AF365842 clone BT60PA10BE4 prokMSA_id:067914 AF365862 clone BT60PA9BF11 prokMSA_id:067909 AF365867 clone BT60PA9BF2 prokMSA_id:060668 AF406402 gamma clone AEGEAN_133_27F prokMSA_id:019849 AF432309 gamma 0%N-6d-7 prokMSA_id:051181 AF441868 gamma clone CD13H12 prokMSA_id:022270 AF446314 gamma FL08A01 prokMSA_id:031966 AF461181 Marinobacter hydrocarbonoclasticus strain DPUZ prokMSA_id:031486 AF469318 gamma clone CTD42B prokMSA_id:039110 AF469321 gamma clone CTD10B prokMSA_id:064129 AF477900 'A74-UMH 8% pond' prokMSA_id:064124 AF477904 'A349-UMH 31% pond' prokMSA_id:066973 AF503857 Marinobacter sp. 'Sargasso Sea s450ao' prokMSA_id:066405 AF506967 Halophilic 2HS38b prokMSA_id:057848 AF546938 clone E5-46-BH1-12/7/98-011 prokMSA_id:057847 AF546942 clone E5-46-BH1-12/7/98-015 prokMSA_id:057832 AF546956 clone E5-46-BH1-12/7/98-029 prokMSA_id:057833 AF546957 clone E5-46-BH1-12/7/98-030 prokMSA_id:057831 AF546959 clone E5-46-BH1-12/7/98-032 prokMSA_id:057829 AF546960 clone E5-46-BH1-12/7/98-033 prokMSA_id:057830 AF546961 clone E5-46-BH1-12/7/98-034 prokMSA_id:029886 AJ232813 clone LBS19 prokMSA_id:075615 AJ294336 Marinobacter sp. HY-106 isolate HY-106 prokMSA_id:023114 AJ416651 gamma clone env.S007 prokMSA_id:028423 AJ416681 Marinobacter sp. SMA4 strain str.SMA4 prokMSA_id:040765 AJ416682 Marinobacter sp. STET3 strain str.STET3 prokMSA_id:040119 AJ416683 Marinobacter sp. SMA2 strain str.SMA2 prokMSA_id:059213 AJ458199 Marinobacter sp. 1sq41 prokMSA_id:074692 AJ458201 Halomonas sp. 2Asq63 prokMSA_id:056854 AJ518751 clone Sai4P3-82 prokMSA_id:086259 AJ542655 Marinobacter sp. 4301-10/5 isolate 4301-10/5 prokMSA_id:084550 AJ557837 Marine arctic deep-sea FA8 prokMSA_id:086956 AJ561143 gamma clone ANT-RB 11 prokMSA_id:087765 AJ561146 gamma clone ANT-AC 07 prokMSA_id:087454 AJ561157 gamma clone RB_OIL 211 prokMSA_id:087122 AJ561168 gamma clone RB_OIL 67 prokMSA_id:086806 AJ561178 Gamma GA-06 isolate GA-06 prokMSA_id:086942 AJ561182 Gamma GA-11 isolate GA-11 prokMSA_id:087424 AJ561184 Gamma GA-15 isolate GA-15 prokMSA_id:059134 AY121826 clone ML-37 prokMSA_id:056831 AY149740 gamma SIMO CL-S30-278 prokMSA_id:056830 AY149745 gamma SIMO CL-S30-72 prokMSA_id:084462 AY241551 Marine HP6a prokMSA_id:085786 AY242717 soil clone TcA31 prokMSA_id:086827 AY293498 gamma clone FL08A11 prokMSA_id:091615 AY345568 clone T7-2-D11 prokMSA_id:092020 AY345574 clone T7-2C10 prokMSA_id:098356 AY395114 clone B29R prokMSA_id:008814 D11189 Marinobacter hydrocarbonoclasticus IAM 12929. prokMSA_id:008812 U43636 clone EH-11. prokMSA_id:021455 U63999 Marinobacter sp. prokMSA_id:024326 U64022 SCB45 prokMSA_id:008813 X67022 Marinobacter hydrocarbonoclasticus str. 17 ATCC 49840 . prokMSA_id:022432 Y18240 Marinobacter hydrocarbonoclasticus strain CH-B434 2.28.3.17 TCP.ROSEOPERSICINA_GROUP 36 seqs 2.28.3.17.002 OTU 5 seqs prokMSA_id:008825 AB010842 str. HTB082. prokMSA_id:033192 AF144407 Alishewanella fetalis prokMSA_id:027315 AF290480 sheep mite Llangefni 75 prokMSA_id:024038 AF371858 clone p-502-o2 prokMSA_id:021087 AF371859 clone p-261-o5 2.28.3.17.003 OTU 1 seq prokMSA_id:008824 X99117 str. SELECT-1. 2.28.3.17.005 OTU 8 seqs prokMSA_id:008826 AB010858 str. HTB010. prokMSA_id:008827 AB010859 str. HTB021. prokMSA_id:008828 AB010860 str. HTB019. prokMSA_id:040969 AF186703 Curacaobacter baltica prokMSA_id:008823 AJ002006 Curacaobacter baltica str. OS 140. prokMSA_id:072201 AJ441081 Rheinheimera baltica strain OS 550 prokMSA_id:073653 AJ441082 Rheinheimera baltica strain OSBAC5 prokMSA_id:083055 AY241547 Marine HP1 2.28.3.17.006 OTU 1 seq prokMSA_id:008822 Y12364 Thiocapsa roseopersicina str. 4210. 2.28.3.17.007 OTU 1 seq prokMSA_id:030572 X92130 sp. Lake Elmenteita isolate 1E1 2.28.3.17.008 OTU 1 seq prokMSA_id:038578 AF250323 Gamma N10 2.28.3.17.009 OTU 1 seq prokMSA_id:044125 AB073132 Pacifibacter primarius 2.28.3.17.010 OTU 1 seq prokMSA_id:055811 AY093457 clone MB-A2-102 2.28.3.17.011 OTU 1 seq prokMSA_id:046026 X92131 sp. Lake Elmenteita isolate 2E1 2.28.3.17.012 OTU 1 seq prokMSA_id:047714 AY077611 Gamma F8 2.28.3.17.999 poor quality 15 seqs prokMSA_id:075136 AB075188 clone:TSR8 prokMSA_id:023216 AF392665 clone CRB8 prokMSA_id:031383 AF428779 clone CR98-5-49 prokMSA_id:066144 AF509477 Gamma MF9 prokMSA_id:056361 AF541930 Gamma MF23 prokMSA_id:059144 AF542077 Gamma JB prokMSA_id:058560 AF544056 gamma isolate DGGE gel band M5-5 prokMSA_id:058564 AF544057 gamma isolate DGGE gel band M7-1 prokMSA_id:055339 AJ441080 Rheinheimera baltica strain OSBAC1 prokMSA_id:055907 AJ441083 Rheinheimera baltica strain BA 33 prokMSA_id:082475 AY092374 clone BI167 prokMSA_id:059194 AY136074 Rheinheimera sp. KIN35 prokMSA_id:059188 AY136081 Rheinheimera sp. KIN89 prokMSA_id:073513 AY146664 Gamma K12 prokMSA_id:082122 AY187535 clone SD115 2.28.3.18 COLWELLIA_GROUP 258 seqs 2.28.3.18.001 OTU 1 seq prokMSA_id:008864 U15115 Pele's Vents clone PVB_54. 2.28.3.18.002 OTU 1 seq prokMSA_id:008854 L10950 marine snow associated clone agg53. 2.28.3.18.011 OTU 1 seq prokMSA_id:008833 AF154057 clone 1_20. 2.28.3.18.012 OTU 7 seqs prokMSA_id:016625 AF052740 Marine KM227 prokMSA_id:070055 AF235112 Gamma KT11ds7 prokMSA_id:024319 AF288370 Idiomarina loihiensis prokMSA_id:076315 AJ294341 Gamma HY-54 isolate HY-54 prokMSA_id:084841 AJ557863 Marine arctic deep-sea FI8 prokMSA_id:067499 AY092077 Idiomarina loihiensis strain 53 prokMSA_id:008832 D87345 unnamed organism. 2.28.3.18.018 OTU 1 seq prokMSA_id:024004 AF425748 Colwellia sp. clone MERTZ_0CM_312 2.28.3.18.019 OTU 2 seqs prokMSA_id:026868 AJ294747 Thalassomonas viridans strain XOM5 CECT 5082 prokMSA_id:036824 AJ294748 Thalassomonas viridans strain XOM25T CECT 5083T 2.28.3.18.022 OTU 18 seqs prokMSA_id:026989 AF333080 Colwellia sp. clone SIC.4-19 prokMSA_id:074479 AF419350 Colwellia sp. Ant5-9 prokMSA_id:035533 AF424079 Colwellia sp. MERTZ_2CM_93 prokMSA_id:080889 AF468254 clone ARKDMS-61 prokMSA_id:080708 AF468288 clone ARKIA-71 prokMSA_id:079807 AF468295 clone ARKIA-129 prokMSA_id:072114 AF530144 Thalassomonas sp. MGP-40 prokMSA_id:081127 AY165566 Antarctic sea ice clone ANTXI/13-90 prokMSA_id:081615 AY165568 Antarctic sea ice clone ANTXI/4_14-79 prokMSA_id:081437 AY165571 Antarctic sea ice clone ANTXI/4_14-151 prokMSA_id:081600 AY165573 Antarctic sea ice clone ANTXI/4_14-31 prokMSA_id:082428 AY167272 Colwellia sp. ANT9037 prokMSA_id:082218 AY167291 Colwellia sp. ANT9176 prokMSA_id:081569 AY167295 Colwellia sp. ANT9187 prokMSA_id:081289 AY167297 Colwellia sp. ANT9196 prokMSA_id:081632 AY167329 Colwellia sp. ANT9381 prokMSA_id:081643 AY167330 Colwellia sp. ANT9407 prokMSA_id:088481 AY321416 clone S40 2.28.3.18.023 OTU 3 seqs prokMSA_id:035914 AB042502 Halophilic TAG C7 prokMSA_id:060389 AF513450 Idiomarina sp. LA26 prokMSA_id:059885 AJ440214 Idiomarina baltica strain OS145 2.28.3.18.024 OTU 1 seq prokMSA_id:037948 X92127 sp. Lake Bogoria isolate 10B1 2.28.3.18.025 OTU 2 seqs prokMSA_id:076778 AB097610 Alteromonadaceae SN-1009 prokMSA_id:043155 AF235128 Alteromonas sp. KT1101 2.28.3.18.026 OTU 1 seq prokMSA_id:044150 X92129 sp. Crater Lake isolate 11C1 2.28.3.18.028 OTU 1 seq prokMSA_id:045973 AF052741 Marine KM231 2.28.3.18.029 OTU 1 seq prokMSA_id:046123 AF424133 Thalassomonas sp. MERTZ_0CM_55 2.28.3.18.030 OTU 1 seq prokMSA_id:046300 AF425747 Colwellia sp. clone MERTZ_0CM_122 2.28.3.18.031 OTU 1 seq prokMSA_id:050517 AF424067 Colwellia sp. MERTZ_2CM_50 2.28.3.18.032 OTU 4 seqs prokMSA_id:060317 AB076557 Marine gamma MKT82 prokMSA_id:060316 AB076560 Marine gamma MKT89 prokMSA_id:060314 AB076561 Marine gamma MKT106 prokMSA_id:084647 AY241418 Alteromonas sp. UST020129-039 2.28.3.18.033 OTU 1 seq prokMSA_id:065942 AF406617 Marine GK-2001 2.28.3.18.034 OTU 1 seq prokMSA_id:066627 AY094497 gamma clone 1-46 2.28.3.18.035 OTU 2 seqs prokMSA_id:067406 AJ456957 Gamma SCc-11 isolate SCc-11 prokMSA_id:078392 AY172286 clone 111 2.28.3.18.036 OTU 1 seq prokMSA_id:067407 AJ456958 Gamma SIg-11 isolate SIg-11 2.28.3.18.038 OTU 36 seqs prokMSA_id:008829 AB002630 Colwellia maris str. ABE-1 JCM 10085 . prokMSA_id:008843 AB011364 Colwellia psychroerythrea ATCC 27364 . prokMSA_id:008834 AB013826 str. 62.f. prokMSA_id:071444 AB059259 Colwellia sp. PS11-3 prokMSA_id:097603 AB094412 Colwellia piezophila strain:Y223G prokMSA_id:008836 AF001375 Colwellia psychroerythrea ATCC 27364 . prokMSA_id:036120 AF173964 Colwellia psychroerythraea prokMSA_id:050180 AF396670 Colwellia sp. 34H prokMSA_id:052870 AF424132 Colwellia sp. MERTZ_2CM_343 prokMSA_id:018770 AF425749 Colwellia sp. clone MERTZ_0CM_35 prokMSA_id:080254 AF468232 clone ARKCH2Br2-29 prokMSA_id:080356 AF468392 Arctic sea ice ARK10102 prokMSA_id:061116 AF530145 Colwellia psychroerythraea prokMSA_id:081177 AY167265 Colwellia rossensis strain ANT8228 prokMSA_id:082300 AY167269 Colwellia rossensis strain ANT8283 prokMSA_id:081749 AY167298 Colwellia rossensis strain ANT9203 prokMSA_id:081695 AY167302 Colwellia rossensis strain ANT9228 prokMSA_id:081575 AY167304 Colwellia rossensis strain ANT9246 prokMSA_id:082290 AY167305 Colwellia rossensis strain ANT9247 prokMSA_id:081641 AY167307 Colwellia rossensis strain ANT9250 prokMSA_id:081807 AY167311 Colwellia rossensis strain ANT9279 prokMSA_id:082309 AY167332 Colwellia rossensis strain ANT9271 prokMSA_id:078109 AY172255 clone 225 prokMSA_id:094879 AY373421 clone A84 complete prokMSA_id:097018 AY375054 clone B142 prokMSA_id:095637 AY375061 clone B91 prokMSA_id:097654 AY375071 clone B344 prokMSA_id:095362 AY375079 clone B98 prokMSA_id:097399 AY375086 clone B136 prokMSA_id:096917 AY375094 clone C51 prokMSA_id:097981 AY375114 clone F2 prokMSA_id:096457 AY375136 clone D12 prokMSA_id:095240 AY375150 clone D7 prokMSA_id:008850 U14581 Colwellia rossensis str. S51-Wgv1. prokMSA_id:008840 U85841 Colwellia psychroerythraea ACAM 604. prokMSA_id:008841 U85842 Colwellia psychroerythraea str. IC064. 2.28.3.18.039 OTU 1 seq prokMSA_id:071670 AF513401 Colwellia sp. 42-2 2.28.3.18.040 OTU 1 seq prokMSA_id:073468 AF254111 Slope strain DIII1c 2.28.3.18.045 OTU 15 seqs prokMSA_id:076773 AY162915 clone ZB-Z3 prokMSA_id:076762 AY162916 clone ZB-Z53 prokMSA_id:075448 AY162920 clone ZB-Z24 prokMSA_id:075561 AY162921 clone ZB-Z29 prokMSA_id:076290 AY162922 clone ZB-Z44 prokMSA_id:076172 AY162924 clone ZB-Z32 prokMSA_id:076616 AY162925 clone ZB-Z34 prokMSA_id:076760 AY162926 clone ZB-Z80 prokMSA_id:076562 AY162927 clone ZB-Z81 prokMSA_id:075667 AY162928 clone ZB-Z41 prokMSA_id:075547 AY162929 clone ZB-Z46 prokMSA_id:075401 AY162930 clone ZB-Z84 prokMSA_id:075777 AY162931 clone ZB-Z48 prokMSA_id:075217 AY162933 clone ZB-Z77 prokMSA_id:075042 AY162934 clone ZB-Z86 2.28.3.18.046 OTU 1 seq prokMSA_id:075849 AY162932 clone ZB-Z74 2.28.3.18.047 OTU 1 seq prokMSA_id:077596 AY172261 clone 219 2.28.3.18.048 OTU 3 seqs prokMSA_id:077812 AY172272 clone 112 prokMSA_id:077651 AY172282 clone 117 prokMSA_id:077663 AY172287 clone 120 2.28.3.18.049 OTU 4 seqs prokMSA_id:077920 AY172275 clone 3156 prokMSA_id:078116 AY172278 clone 3170 prokMSA_id:077764 AY172298 clone 3165 prokMSA_id:078269 AY172306 clone 3189 2.28.3.18.050 OTU 1 seq prokMSA_id:077779 AY172300 clone 39 2.28.3.18.051 OTU 1 seq prokMSA_id:077787 AY172290 clone 28 2.28.3.18.052 OTU 1 seq prokMSA_id:077803 AY172267 clone 216 2.28.3.18.053 OTU 1 seq prokMSA_id:077946 AY172253 clone 222 2.28.3.18.054 OTU 1 seq prokMSA_id:077985 AY172257 clone 2119 2.28.3.18.055 OTU 1 seq prokMSA_id:078115 AY172239 clone 220 2.28.3.18.056 OTU 1 seq prokMSA_id:078133 AY171326 clone s35 2.28.3.18.057 OTU 1 seq prokMSA_id:078151 AY172292 clone 333 2.28.3.18.058 OTU 1 seq prokMSA_id:078196 AY172262 clone 240 2.28.3.18.060 OTU 21 seqs prokMSA_id:008838 AF001376 Colwellia -like sp. IC169 str. IC169. prokMSA_id:044617 AF277487 Colwellia SIC.42384 prokMSA_id:036713 AF277505 Colwellia SIC.8124 prokMSA_id:017547 AF277506 Colwellia SIC.8125 prokMSA_id:049750 AF424148 Colwellia sp. MERTZ_0CM_241 prokMSA_id:017019 AF424174 Colwellia sp. MERTZ_21CM_243 prokMSA_id:080830 AF468284 clone ARKIA-94 prokMSA_id:080364 AF468310 clone ARKICE-28 prokMSA_id:079265 AF505723 Gamma UMB3E prokMSA_id:079426 AF505728 Gamma UMB6B prokMSA_id:079530 AF505729 Gamma UMB6D prokMSA_id:079516 AF505732 Gamma UMB7C prokMSA_id:079209 AF505733 Gamma UMB7D prokMSA_id:079094 AF505737 Gamma UMB8H prokMSA_id:079163 AF505738 Gamma UMB10B prokMSA_id:082145 AY167251 Roseobacter sp. ANT8230 prokMSA_id:081818 AY167264 Colwellia sp. ANT8203 prokMSA_id:082439 AY167266 Colwellia sp. ANT8258 prokMSA_id:082465 AY167268 Colwellia sp. ANT8279 prokMSA_id:082359 AY167299 Colwellia sp. ANT9207 prokMSA_id:080918 AY220721 gamma clone WCPAP17 2.28.3.18.061 OTU 1 seq prokMSA_id:079584 AF505731 Gamma UMB7A 2.28.3.18.062 OTU 1 seq prokMSA_id:079736 AY198115 Colwellia sp. HLC 2.28.3.18.063 OTU 1 seq prokMSA_id:079932 AB094895 clone:OHKB7.37 2.28.3.18.064 OTU 1 seq prokMSA_id:079936 AF468255 clone ARKDMS-64 2.28.3.18.065 OTU 1 seq prokMSA_id:080037 AB094844 clone:OHKB4.37 2.28.3.18.066 OTU 1 seq prokMSA_id:080187 AB094883 clone:OHKB7.7 2.28.3.18.067 OTU 1 seq prokMSA_id:080453 AF468313 clone ARKICE-87 2.28.3.18.068 OTU 1 seq prokMSA_id:080476 AB094896 clone:OHKB7.39 2.28.3.18.069 OTU 1 seq prokMSA_id:080647 AB094929 clone:OHKB9.62 2.28.3.18.070 OTU 1 seq prokMSA_id:080669 AB094890 clone:OHKB7.25 2.28.3.18.071 OTU 1 seq prokMSA_id:080717 AB094885 clone:OHKB7.17 2.28.3.18.072 OTU 1 seq prokMSA_id:080935 AB094911 clone:OHKB7.82 2.28.3.18.073 OTU 1 seq prokMSA_id:081146 AY167340 Psychrobacter sp. ARK10133 2.28.3.18.074 OTU 1 seq prokMSA_id:081968 AY194066 Gamma JC2041 2.28.3.18.075 OTU 1 seq prokMSA_id:085572 AY177721 Alteromonadaceae TAI 2.28.3.18.076 OTU 1 seq prokMSA_id:091829 AY345388 JB11 2.28.3.18.077 OTU 1 seq prokMSA_id:094196 AY277261 Gamma H14 2.28.3.18.078 OTU 1 seq prokMSA_id:094412 AY373406 clone A159 complete 2.28.3.18.079 OTU 1 seq prokMSA_id:095220 AY375093 clone C48 2.28.3.18.080 OTU 1 seq prokMSA_id:095364 AY375068 clone B119 2.28.3.18.081 OTU 1 seq prokMSA_id:095462 AY375141 clone D259 2.28.3.18.082 OTU 1 seq prokMSA_id:095722 AY375080 clone B107 2.28.3.18.083 OTU 1 seq prokMSA_id:096101 AY375147 clone D62 2.28.3.18.084 OTU 1 seq prokMSA_id:096356 AY375107 clone F1 2.28.3.18.085 OTU 1 seq prokMSA_id:096416 AY375116 clone F22 2.28.3.18.086 OTU 1 seq prokMSA_id:096526 AY375109 clone F11 2.28.3.18.087 OTU 1 seq prokMSA_id:096684 AY375096 clone C54 2.28.3.18.088 OTU 1 seq prokMSA_id:096685 AY375122 clone F39 2.28.3.18.089 OTU 1 seq prokMSA_id:096811 AY375138 clone D135 2.28.3.18.090 OTU 1 seq prokMSA_id:097154 AY375139 clone D17 2.28.3.18.091 OTU 1 seq prokMSA_id:097770 AY375127 clone F48 2.28.3.18.092 OTU 1 seq prokMSA_id:098022 AY375101 clone C73 2.28.3.18.093 OTU 1 seq prokMSA_id:098226 AY375059 clone B184 2.28.3.18.094 OTU 1 seq prokMSA_id:098234 AY375123 clone F4 2.28.3.18.095 OTU 1 seq prokMSA_id:098879 AY375126 clone F47 2.28.3.18.999 poor quality 80 seqs prokMSA_id:037277 AB036070 Gram-negative CKT1 prokMSA_id:033145 AB042514 methane-seep sediment SB-12 prokMSA_id:056162 AB076559 Marine gamma MKT87 prokMSA_id:008851 AF007676 clone g18. prokMSA_id:008852 AF007685 clone sh45. prokMSA_id:008853 AF007693 clone sh171. prokMSA_id:028684 AF017796 Colwellia-like S1C20 prokMSA_id:033528 AF017797 Colwellia-like S1C12 prokMSA_id:036029 AF017798 Colwellia-like S3C15 prokMSA_id:026481 AF025314 Colwellia sp. KAT1 prokMSA_id:028562 AF025325 Gamma KAT12 prokMSA_id:042969 AF025328 Gamma KAT15 prokMSA_id:072819 AF034936 Colwellia sp. 'Egg clone D35' prokMSA_id:050744 AF055807 Marine 'Tomales Bay wc2-3 lg wh' prokMSA_id:022608 AF055808 Marine 'Tomales Bay wc2-3 sm wh' prokMSA_id:052178 AF055834 Marine 'Tomales Bay wc1-28' prokMSA_id:046487 AF055835 Marine 'Tomales Bay wc1-2 sm white' prokMSA_id:048978 AF056462 Colwellia sp. LX2 prokMSA_id:008848 AF140006 str. ML-173. prokMSA_id:021830 AF141409 gamma clone CR-FL28 prokMSA_id:032095 AF257285 marine gamma DHB-33 prokMSA_id:017304 AF257286 marine gamma DHB-12 prokMSA_id:045305 AF257287 marine gamma DHB-8 prokMSA_id:041223 AF257288 marine gamma DHB-32 prokMSA_id:051705 AF283848 Arctic sea ice AWS-6M3 prokMSA_id:044372 AF283849 Arctic sea ice AWS-4B2 prokMSA_id:041218 AF283852 Chukchi Sea AWS-7W3 prokMSA_id:041551 AF332264 clone C12-28 prokMSA_id:059140 AF542200 Gamma 21C prokMSA_id:070989 AH005125 Colwellia sp. MT41 prokMSA_id:070265 AJ414139 Colwellia sp. OFE1-10 strain OFE1-10 prokMSA_id:073576 AJ440215 Idiomarina baltica strain OS146 prokMSA_id:057398 AJ517886 clone mHK45.1 prokMSA_id:056014 AJ517896 clone mOO44.5 prokMSA_id:057396 AJ517897 clone mOO46.2 prokMSA_id:056529 AJ517898 clone mOO46.5 prokMSA_id:088008 AJ561166 gamma clone RB_OIL 64 prokMSA_id:088048 AJ561169 gamma clone RB_OIL 70 prokMSA_id:087871 AJ561171 gamma clone RB_OIL 75 prokMSA_id:087942 AJ561174 gamma clone RB_OIL 82 prokMSA_id:064970 AY095628 gamma OS3.5K-15 prokMSA_id:065034 AY095787 gamma HI-44 prokMSA_id:055335 AY100672 Colwellia sp. U1 prokMSA_id:056129 AY100673 Colwellia sp. U7 prokMSA_id:066132 AY100674 Colwellia sp. U27 prokMSA_id:063186 AY117758 gamma isolate DGGE band S-6 prokMSA_id:077016 AY162917 clone ZB-Z4 prokMSA_id:076950 AY162918 clone ZB-Z36 prokMSA_id:076892 AY162919 clone ZB-Z40 prokMSA_id:077173 AY162923 clone ZB-Z39 prokMSA_id:077618 AY172283 clone 119 prokMSA_id:085794 AY241420 Idiomarina sp. UST020129-003 prokMSA_id:086426 AY271861 clone BSW 18 prokMSA_id:008835 L10939 Colwellia psychroerythrea. prokMSA_id:047829 U78923 gamma prokMSA_id:023367 U78925 gamma prokMSA_id:019545 U78926 gamma prokMSA_id:031077 U78927 gamma prokMSA_id:008842 U85843 Colwellia psychroerythraea ACAM 605. prokMSA_id:008830 U85844 Colwellia demingiae str. IC068 ACAM 606. prokMSA_id:008837 U85845 Colwellia demingiae str. ICP11 ACAM 459. prokMSA_id:008849 U85846 Colwellia psychrotropica ACAM 179 . prokMSA_id:008831 U85847 Colwellia hornerae str. IC035 ACAM 607. prokMSA_id:071419 U91595 Colwellia sp. MT41 prokMSA_id:071140 U91596 Colwellia sp. MT41 prokMSA_id:008865 X91533 clone K18. prokMSA_id:008855 Z77362 str. 1-140 C20. prokMSA_id:008856 Z77377 str. 1-140 C37. prokMSA_id:008857 Z77378 str. 1-140 C38. prokMSA_id:008858 Z77385 str. 1-140 C47. prokMSA_id:008844 Z77425 str. 1-420 C59. prokMSA_id:008839 Z77449 str. 1-700 C23. prokMSA_id:008845 Z77460 str. 1-700 C38. prokMSA_id:008859 Z77480 str. 2-100 C1.16. prokMSA_id:008860 Z77488 str. 2-100 C1.7. prokMSA_id:008846 Z77568 str. 1-140 C38. prokMSA_id:008861 Z77572 str. 1-140 C47. prokMSA_id:008862 Z77584 str. 1-700 C23. prokMSA_id:008863 Z77606 str. 2-100 C1.7. prokMSA_id:008847 Z77648 str. 2-400 C2/2.7. 2.28.3.19 ALTM.MACLEODII_GROUP 408 seqs 2.28.3.19.004 OTU 1 seq prokMSA_id:008898 U73724 str. 214.6. 2.28.3.19.009 OTU 1 seq prokMSA_id:008893 Y18230 Alteromonas macleodii. 2.28.3.19.010 OTU 1 seq prokMSA_id:008892 Y18229 Alteromonas macleodii. 2.28.3.19.011 OTU 2 seqs prokMSA_id:008890 AB004313 marine prokMSA_id:045496 AB040466 Alteromonas sp. D 2.28.3.19.020 OTU 1 seq prokMSA_id:008878 AF114499 str. SUR ATT. 2.28.3.19.023 OTU 1 seq prokMSA_id:008875 AF114496 str. DCM ATT. 2.28.3.19.024 OTU 5 seqs prokMSA_id:080765 AF468309 clone ARKICE-110 prokMSA_id:081094 AY165577 Antarctic sea ice clone ANTXI/4_14-132 prokMSA_id:081840 AY165591 Arctic sea ice clone ARKXV/1-106 prokMSA_id:082034 AY165594 Arctic sea ice clone ARKXV/1-127 prokMSA_id:008873 U85854 Glaciecola pallidula str. IC079 ACAM 615. 2.28.3.19.026 OTU 1 seq prokMSA_id:008869 AF159673 clone HstpL81. 2.28.3.19.027 OTU 1 seq prokMSA_id:008868 AF159672 clone HstpL30. 2.28.3.19.028 OTU 2 seqs prokMSA_id:029913 AB035558 marine strain:GY9536 prokMSA_id:016732 AB035559 marine strain:GY9548 2.28.3.19.029 OTU 1 seq prokMSA_id:019556 AB022708 Facultatively oligotrophic PFO-2 2.28.3.19.030 OTU 2 seqs prokMSA_id:021298 AB035555 marine complete strain:GY3 prokMSA_id:038060 AB040465 Alteromonas sp. K 2.28.3.19.031 OTU 2 seqs prokMSA_id:059150 AY136118 Alteromonas sp. MED102 prokMSA_id:091138 AY345405 K2-7 2.28.3.19.034 OTU 7 seqs prokMSA_id:074198 AB049729 Glaciecola sp. HA02 prokMSA_id:079499 AF505735 Gamma UMB8E prokMSA_id:039858 AJ293820 Arctic seawater R7215 prokMSA_id:065357 AJ488501 Glaciecola sp. KMM 241 strain KMM 241 prokMSA_id:088454 AJ548478 Glaciecola polaris strain strain LMG 21854 prokMSA_id:089023 AJ548479 Glaciecola gelidimarina strain LMG 21855 prokMSA_id:093339 AY277274 Gamma H23 2.28.3.19.035 OTU 33 seqs prokMSA_id:031197 AF359542 Marine ATAM173a_5 prokMSA_id:080204 AF468251 clone ARKDMS-52 prokMSA_id:079900 AF468292 clone ARKIA-115 prokMSA_id:080428 AF468296 clone ARKIA-34 prokMSA_id:080755 AF468389 Arctic sea ice ARK10047 prokMSA_id:080564 AF468393 Arctic sea ice ARK10108 prokMSA_id:079998 AF468394 Arctic sea ice ARK10128 prokMSA_id:080404 AF468395 Arctic sea ice ARK10130 prokMSA_id:080881 AF468399 Arctic sea ice ARK10218 prokMSA_id:047176 AJ295716 Polar sea R9879 prokMSA_id:081148 AY165569 Antarctic sea ice clone ANTXI/4_14-97 prokMSA_id:081756 AY165572 Antarctic sea ice clone ANTXI/4_14-32 prokMSA_id:082404 AY165576 Antarctic sea ice clone ANTXI/4_14-62 prokMSA_id:082435 AY167270 Glaciecola sp. ANT8284 prokMSA_id:081831 AY167271 Glaciecola sp. ANT9029 prokMSA_id:082405 AY167274 Glaciecola sp. ANT9055 prokMSA_id:081369 AY167275 Glaciecola sp. ANT9061 prokMSA_id:082048 AY167277 Glaciecola sp. ANT9085 prokMSA_id:081511 AY167280 Glaciecola sp. ANT9094 prokMSA_id:081720 AY167283 Glaciecola sp. ANT9133 prokMSA_id:081210 AY167284 Glaciecola sp. ANT9142 prokMSA_id:081573 AY167285 Glaciecola sp. ANT9148 prokMSA_id:081795 AY167287 Glaciecola sp. ANT9154 prokMSA_id:081376 AY167288 Glaciecola sp. ANT9166 prokMSA_id:081743 AY167290 Glaciecola sp. ANT9175 prokMSA_id:082072 AY167292 Glaciecola sp. ANT9177 prokMSA_id:081075 AY167293 Glaciecola sp. ANT9183b prokMSA_id:081949 AY167296 Glaciecola punicea strain ANT9189 prokMSA_id:081097 AY167300 Glaciecola sp. ANT9218 prokMSA_id:081035 AY167303 Glaciecola sp. ANT9230 prokMSA_id:082266 AY167309 Glaciecola sp. ANT9258 prokMSA_id:082306 AY167323 Glaciecola sp. ANT9159 prokMSA_id:081777 AY167334 Glaciecola sp. ANT9081 2.28.3.19.036 OTU 1 seq prokMSA_id:034578 AF469317 gamma clone CTD70B 2.28.3.19.037 OTU 1 seq prokMSA_id:035256 AB035557 marine complete strain:GY9501 2.28.3.19.040 OTU 1 seq prokMSA_id:037867 AB077342 gamma clone:TYM--5 2.28.3.19.041 OTU 1 seq prokMSA_id:056430 AB076562 Marine gamma MKT112 2.28.3.19.042 OTU 1 seq prokMSA_id:042742 AF469279 gamma clone 33-FL26B99 2.28.3.19.043 OTU 1 seq prokMSA_id:042798 AF114503 gamma 400m-ATT-24 complete 2.28.3.19.044 OTU 1 seq prokMSA_id:043614 AB040464 Alteromonas sp. S 2.28.3.19.045 OTU 1 seq prokMSA_id:045293 U86499 marine pB1-133 2.28.3.19.047 OTU 109 seqs prokMSA_id:008899 AB010844 str. HTC 34. prokMSA_id:008901 AB010855 str. HTC036. prokMSA_id:008902 AB010856 str. HTC035. prokMSA_id:008903 AB010857 str. HTC032. prokMSA_id:008900 AB015135 Alteromonas sp. str. KE10. prokMSA_id:022311 AB049730 Alteromonas sp. TO01 prokMSA_id:067709 AB072388 Alteromonas sp. KC98716-13 prokMSA_id:063591 AB078014 Alteromonas sp. SHY1-1 prokMSA_id:081621 AB086226 Biphenyl-degrading BP-PH prokMSA_id:008874 AF114495 str. 400m ATT. prokMSA_id:008876 AF114497 str. SUR ATT. prokMSA_id:008877 AF114498 str. SUR ATT. prokMSA_id:008879 AF114500 str. DCM ATT. prokMSA_id:008880 AF114501 str. SUR ATT. prokMSA_id:008881 AF114502 str. 400m ATT. prokMSA_id:008882 AF114504 str. 400m ATT. prokMSA_id:008883 AF114505 str. DCM ATT. prokMSA_id:008884 AF114506 str. 400m ATT. prokMSA_id:008885 AF114507 str. 400m ATT. prokMSA_id:008886 AF114508 str. SUR ATT. prokMSA_id:034763 AF114509 gamma DCM-ATT-9 complete prokMSA_id:050733 AF190217 Gamma RSHD3S12 prokMSA_id:031897 AF195474 Alteromonas sp. kbs13 prokMSA_id:051150 AF285610 Car164 prokMSA_id:071626 AF288360 Alteromonas alvinellae prokMSA_id:041056 AF343926 Pseudoalteromonas sp. NBF5 prokMSA_id:051595 AF343939 Alteromonas sp. NBF18 prokMSA_id:026409 AF354598 gamma Arctic95A-15 prokMSA_id:024149 AF354599 gamma Arctic95A-1 prokMSA_id:029391 AF354600 gamma Arctic95A-4 prokMSA_id:073913 AF359529 Marine ATAM407_18 prokMSA_id:044702 AF386742 Alteromonas sp. 4BT prokMSA_id:071090 AF427478 Alteromonas sp. ANSW2-2 prokMSA_id:017871 AF440707 gamma ARCT1-19 prokMSA_id:041716 AF465356 Gamma UST991130-038 prokMSA_id:026765 AF465357 Gamma UST991130-039 prokMSA_id:037261 AF465384 Gamma UST991130-003 prokMSA_id:028649 AF469305 gamma clone 33-PA57B99 prokMSA_id:051573 AF469319 gamma clone CTD33B prokMSA_id:039734 AF469320 gamma clone CTD41B prokMSA_id:067590 AF493971 Alteromonas alvinellae prokMSA_id:067588 AF493972 Alteromonas macleodii prokMSA_id:060377 AF513462 Alteromonadaceae PH5 prokMSA_id:062501 AF513939 Alteromonadaceae clone LAS-B15N prokMSA_id:055687 AF513940 Alteromonadaceae clone LAS-B5N prokMSA_id:062499 AF513941 Alteromonadaceae clone PH-B55N prokMSA_id:062493 AF513950 Alteromonadaceae clone PH-B21N prokMSA_id:060991 AF529060 Alteromonas marina strain SW-47 prokMSA_id:060990 AF529061 Alteromonas marina strain SW-49 prokMSA_id:073722 AJ240914 gamma CHAB-IV-19 5' prokMSA_id:074015 AJ240916 gamma CHAB-V-29 5' prokMSA_id:045350 AJ240919 gamma CHAB-VI-3 5' prokMSA_id:072274 AJ244756 Alteromonas sp. V4.ME.16 prokMSA_id:073869 AJ244757 Alteromonas sp. V4.BE.33 prokMSA_id:062005 AJ244758 Alteromonas sp. V4.BE.32 prokMSA_id:046469 AJ294360 Alteromonas sp. 407-2 strain 407-2 prokMSA_id:026192 AJ294361 Alteromonas sp. 2c3 strain 2c3 prokMSA_id:073896 AJ294362 Alteromonas sp. 253-19 strain 253-19 strain 253-19 prokMSA_id:073259 AJ295715 Polar sea R9875 prokMSA_id:043399 AJ302708 Alteromonas sp. ME109 prokMSA_id:033294 AJ310691 clone 318 prokMSA_id:029334 AJ310692 clone 270 prokMSA_id:071568 AJ319537 Alteromonas macleodii subsp. abyssi strain HYD657 prokMSA_id:035156 AJ391191 Alteromonas sp. AS-30 prokMSA_id:023327 AJ391192 Alteromonas sp. AS-31 prokMSA_id:055521 AJ414399 Alteromonas macleodii subsp. fijiensi strain medioatlantica prokMSA_id:067405 AJ456959 Alteromonas macleodii isolate LCm-3 prokMSA_id:067404 AJ456960 Pseudoalteromonas sp. SCc-7 isolate SCc-7 prokMSA_id:067400 AJ456961 Alteromonas macleodii isolate LCm-7 prokMSA_id:090316 AJ564723 Alteromonas stellaepolaris strain LMG 21856 prokMSA_id:089590 AJ564724 Alteromonas stellaepolaris strain LMG 21859 prokMSA_id:089009 AJ564725 Alteromonas stellaepolaris strain LMG 21860 prokMSA_id:088975 AJ564726 Alteromonas stellaepolaris strain LMG 21862 prokMSA_id:089674 AJ564727 Alteromonas stellaepolaris strain LMG 21863 prokMSA_id:089785 AJ564728 Alteromonas stellaepolaris strain LMG 21864 prokMSA_id:088174 AJ567544 Alteromonadaceae clone MBMPE26 prokMSA_id:090738 AJ567558 Alteromonadaceae clone MBMPE44 prokMSA_id:090600 AJ567566 Alteromonas sp. clone MBMPE56 prokMSA_id:088388 AJ567575 Alteromonas sp. clone MBAE12 prokMSA_id:090425 AJ567585 Alteromonadaceae clone MBAE26 prokMSA_id:023343 AY038371 gamma clone CD3A5 prokMSA_id:040330 AY038373 gamma clone CD3C6 prokMSA_id:065037 AY095783 gamma HI-38 prokMSA_id:056435 AY095812 Alteromonadaceae CS4K-220 prokMSA_id:059154 AY136113 Alteromonas alvinellae MED76 prokMSA_id:059153 AY136114 Alteromonas sp. MED87 prokMSA_id:059149 AY136117 Alteromonas sp. MED100 prokMSA_id:083231 AY207503 Gamma JC2043 prokMSA_id:080386 AY220712 gamma clone WCPAP8 prokMSA_id:082938 AY241400 Alteromonas sp. UST010723-005 prokMSA_id:083376 AY241417 Alteromonas sp. UST020129-020 prokMSA_id:091492 AY344429 clone K2-30-18 prokMSA_id:091494 AY345374 JB9 prokMSA_id:091585 AY345387 JB12 prokMSA_id:092015 AY345435 K2-14 prokMSA_id:091443 AY345465 K55 prokMSA_id:091517 AY345469 K5 prokMSA_id:091660 AY345474 K4 prokMSA_id:091533 AY345489 clone W4B-E12 prokMSA_id:094162 AY360499 clone BSB15-364m prokMSA_id:094739 AY371182 clone L36_Loihi prokMSA_id:094495 AY372115 L1A prokMSA_id:041259 U86463 marine pN1-88 prokMSA_id:025723 Y15323 Pseudoalteromonas sp. isolate PRLIST2 prokMSA_id:008891 Y18228 Alteromonas macleodii DSM 6062. prokMSA_id:008894 Y18231 Alteromonas macleodii. prokMSA_id:019130 Y18232 Alteromonas macleodii strain CH-518 prokMSA_id:008895 Y18233 Alteromonas macleodii str. CH-460. prokMSA_id:008896 Y18234 Alteromonas macleodii str. CH-516. 2.28.3.19.048 OTU 1 seq prokMSA_id:051361 AF343943 Marine NBF22 2.28.3.19.049 OTU 1 seq prokMSA_id:062003 AJ244759 Alteromonas sp. V4.BO.35 2.28.3.19.050 OTU 1 seq prokMSA_id:064940 AY095802 Alteromonadaceae CS4K-110 2.28.3.19.051 OTU 1 seq prokMSA_id:071399 AF173965 Alteromonas macleodii 2.28.3.19.052 OTU 1 seq prokMSA_id:073507 AJ240917 gamma CHAB-IV-34 5' 2.28.3.19.053 OTU 1 seq prokMSA_id:073940 AJ240915 gamma CHAB-XII-8 5' 2.28.3.19.054 OTU 1 seq prokMSA_id:077643 AY172243 clone 241 2.28.3.19.055 OTU 1 seq prokMSA_id:077687 AY171348 clone s24 2.28.3.19.056 OTU 1 seq prokMSA_id:078026 AY171393 clone s48 2.28.3.19.057 OTU 1 seq prokMSA_id:078180 AY172247 clone 223 2.28.3.19.058 OTU 1 seq prokMSA_id:079817 AF468268 clone ARKCH4-4 2.28.3.19.060 OTU 6 seqs prokMSA_id:023306 AF277554 Glaciecola McMurdo.541 prokMSA_id:080086 AF468279 clone ARKIA-118 prokMSA_id:081399 AY165578 Antarctic sea ice clone ANTXI/4_14-11 prokMSA_id:081059 AY167279 Glaciecola punicea strain ANT9087 prokMSA_id:008870 U85851 Glaciecola punicea str. IC059 ACAM 610. prokMSA_id:008872 U85853 Glaciecola punicea str. IC067 ACAM 611. 2.28.3.19.061 OTU 1 seq prokMSA_id:080542 AF468289 clone ARKIA-84 2.28.3.19.062 OTU 1 seq prokMSA_id:080685 AY193278 clone BTM59 2.28.3.19.063 OTU 1 seq prokMSA_id:081176 AY165570 Antarctic sea ice clone ANTXI/4_14-45 2.28.3.19.064 OTU 1 seq prokMSA_id:082303 AY165585 Arctic sea ice clone ARKXVI/2-42 2.28.3.19.065 OTU 1 seq prokMSA_id:084007 AY207502 Gamma JC2042 2.28.3.19.066 OTU 1 seq prokMSA_id:084362 AY226248 Alteromonas sp. clone BBBB-41 2.28.3.19.067 OTU 1 seq prokMSA_id:086032 AJ440975 Antarctic R-11381 strain R-11381 2.28.3.19.068 OTU 1 seq prokMSA_id:091221 AY349463 Glaciecola sp. WHOI JT-6b 2.28.3.19.069 OTU 1 seq prokMSA_id:093991 AY277275 Gamma H94 2.28.3.19.999 poor quality 204 seqs prokMSA_id:017824 AB001334 Marine GY27 prokMSA_id:019149 AB001335 Marine GY21 prokMSA_id:074700 AB001336 Marine MC27 prokMSA_id:046066 AB007017 Gamma subdivision prokMSA_id:032745 AB041296 ECS26 prokMSA_id:046323 AB041297 ECS27 prokMSA_id:044840 AB047146 SW11 prokMSA_id:060315 AB076558 Marine gamma MKT86 prokMSA_id:082716 AB106190 Glaciecola sp. FRA000008 prokMSA_id:082492 AB106192 Glaciecola sp. FRA000010 prokMSA_id:085266 AB106193 Glaciecola sp. FRA000011 prokMSA_id:086165 AB106194 Glaciecola sp. FRA000012 prokMSA_id:086343 AB106195 Glaciecola sp. FRA000013 prokMSA_id:084848 AB106199 Glaciecola sp. FRA000016 prokMSA_id:085791 AB106216 Glaciecola sp. FRA000029 prokMSA_id:084702 AB106217 Alteromonas macleodii strain: FRA000030 prokMSA_id:083275 AB106218 Alteromonas macleodii strain: FRA000031 prokMSA_id:035258 AF025546 Alteromonas sp. MED3 prokMSA_id:043410 AF025558 Alteromonas sp. MED15 prokMSA_id:037237 AF025566 Gamma MED23 prokMSA_id:019425 AF025957 Alteromonas macleodii prokMSA_id:041258 AF025959 Alteromonas macleodii prokMSA_id:026326 AF052600 Alteromonas macleodii strain SCB55 prokMSA_id:022424 AF052601 Alteromonas macleodii strain SCB56 prokMSA_id:023730 AF111860 UPB C7 prokMSA_id:020075 AF114511 gamma 400m-ATT-3 complete prokMSA_id:019875 AF114512 gamma 400m-ATT-4 complete prokMSA_id:052429 AF114513 gamma 400m-ATT-4 complete prokMSA_id:020843 AF114514 gamma 400m-ATT-6 complete prokMSA_id:052242 AF114515 gamma 400m-ATT-6 complete prokMSA_id:033155 AF114516 gamma 400m-ATT-9 complete prokMSA_id:025086 AF114517 gamma 400m-ATT-9 complete prokMSA_id:016381 AF114518 gamma 400m-ATT-8 complete prokMSA_id:047026 AF114519 gamma 400m-ATT-8 complete prokMSA_id:035781 AF114520 gamma 400m-ATT-15 complete prokMSA_id:042344 AF114526 gamma 400m-ATT-23 complete prokMSA_id:032080 AF114527 gamma 400m-ATT-23 complete prokMSA_id:035762 AF114528 gamma 400m-ATT-22 complete prokMSA_id:023222 AF114529 gamma 400m-ATT-22 complete prokMSA_id:029610 AF114530 gamma 400m-ATT-12 complete prokMSA_id:074864 AF114531 gamma 400m-ATT-12 complete prokMSA_id:028026 AF114532 gamma 400m-ATT-13 complete prokMSA_id:051170 AF114533 gamma 400m-ATT-13 complete prokMSA_id:022584 AF114534 gamma 400m-FREE-5 prokMSA_id:039820 AF114535 gamma 400m-FREE-6 prokMSA_id:045538 AF114536 gamma 400m-FREE-7 prokMSA_id:025139 AF114538 gamma 400m-FREE-10 prokMSA_id:043475 AF114542 gamma 400m-FREE-20 prokMSA_id:047589 AF114543 gamma 400m-FREE-21 prokMSA_id:029724 AF114546 gamma 400m-FREE-24 prokMSA_id:025806 AF114547 gamma 400m-FREE-26 prokMSA_id:018855 AF114549 gamma 400m-FREE-29 prokMSA_id:039121 AF114551 gamma 400m-FREE-32 prokMSA_id:041564 AF114559 gamma 400m-FREE-8 prokMSA_id:029294 AF114562 gamma 400m-FREE-14 prokMSA_id:047654 AF114563 gamma 400m-FREE-17 prokMSA_id:017295 AF114564 gamma 400m-FREE-20 prokMSA_id:036655 AF114565 gamma 400m-FREE-21 prokMSA_id:034500 AF114566 gamma 400m-FREE-22 prokMSA_id:044610 AF114567 gamma 400m-FREE-23 prokMSA_id:036358 AF114568 gamma 400m-FREE-24 prokMSA_id:040470 AF114569 gamma 400m-FREE-26 prokMSA_id:017588 AF114570 gamma 400m-FREE-28 prokMSA_id:024595 AF114571 gamma 400m-FREE-29 prokMSA_id:048086 AF114574 gamma 400m-FREE-33 prokMSA_id:047082 AF114575 gamma 400m-FREE-38 prokMSA_id:044342 AF114578 gamma DCM-ATT-6 prokMSA_id:045477 AF114580 gamma DCM-ATT-8 prokMSA_id:028234 AF114584 gamma DCM-ATT-15 prokMSA_id:045795 AF114585 gamma DCM-ATT-16 prokMSA_id:038362 AF114587 gamma DCM-ATT-23 prokMSA_id:027381 AF114590 gamma DCM-ATT-8 prokMSA_id:041541 AF114592 gamma DCM-ATT-13 prokMSA_id:045970 AF114593 gamma DCM-ATT-14 prokMSA_id:029697 AF114595 gamma DCM-ATT-16 prokMSA_id:047690 AF114596 gamma DCM-ATT-19 prokMSA_id:024306 AF114597 gamma DCM-ATT-23 prokMSA_id:040451 AF114598 gamma DCM-ATT-24 prokMSA_id:022075 AF114601 gamma SUR-ATT-4 prokMSA_id:050364 AF114602 gamma SUR-ATT-6 prokMSA_id:050650 AF114605 gamma SUR-ATT-10 prokMSA_id:038943 AF114606 gamma SUR-ATT-12 prokMSA_id:046786 AF114608 gamma SUR-ATT-16 prokMSA_id:025088 AF114610 gamma SUR-ATT-25 prokMSA_id:021924 AF114611 gamma SUR-ATT-1 prokMSA_id:020451 AF114616 gamma SUR-ATT-9 prokMSA_id:046622 AF114620 gamma SUR-ATT-16 prokMSA_id:036532 AF114643 alpha DCM-ATT-3 prokMSA_id:037944 AF114674 gamma DCM-FREE-5 prokMSA_id:048103 AF114692 gamma DCM-FREE-5 prokMSA_id:072327 AF177563 marine D029 prokMSA_id:073011 AF177565 marine D031 prokMSA_id:040829 AF207848 marine OTU_F prokMSA_id:073351 AF235107 Alteromonas sp. KT11ds4 prokMSA_id:072384 AF239705 Pseudoalteromonas sp. KT0812A prokMSA_id:027154 AF260749 Pseudoalteromonas sp. I-137-9 prokMSA_id:019224 AF261044 Alteromonas macleodii prokMSA_id:051518 AF261045 Alteromonas sp. SKA23 prokMSA_id:025913 AF261055 Alteromonas sp. SKA33 prokMSA_id:038658 AF283850 Arctic sea ice AWS-4U2 prokMSA_id:036637 AF283851 Arctic sea ice AWS-6M2 prokMSA_id:034635 AF283853 Arctic sea ice AWS-6M4 prokMSA_id:021996 AF283854 Arctic sea ice AWS-6B1 prokMSA_id:049119 AF283856 Arctic sea ice AWS-7M2 prokMSA_id:028372 AF283857 Chukchi Sea AWS-7W2 prokMSA_id:042561 AF283858 Arctic sea ice AWS-11B6 prokMSA_id:034554 AF283860 Arctic sea ice AWS-4M2 prokMSA_id:050523 AF321074 clone A7 prokMSA_id:030110 AF321075 Alteromonas macleodii clone prokMSA_id:016578 AF321076 Alteromonas macleodii clone rrnB prokMSA_id:050573 AF321077 Alteromonas macleodii clone rrnC prokMSA_id:044143 AF321078 Alteromonas macleodii clone rrnD prokMSA_id:024307 AF323557 Bay of Fundy BA10-3A prokMSA_id:045986 AF323559 Bay of Fundy BA10-4A prokMSA_id:045401 AF343937 Alteromonas sp. NBF16 prokMSA_id:026217 AF343938 Alteromonas sp. NBF17 prokMSA_id:052256 AF343940 Alteromonas sp. NBF19 prokMSA_id:031073 AF343941 Alteromonas sp. NBF20 prokMSA_id:046357 AF343942 Alteromonas sp. NBF21 prokMSA_id:046864 AF343955 Alteromonas sp. NBF34 prokMSA_id:017626 AF343959 Alteromonas sp. NBF38 prokMSA_id:030990 AF357187 Alteromonas sp. C260 prokMSA_id:068129 AF365607 clone BT60MF7BB7 prokMSA_id:033117 AF366036 Marine gamma SB18 prokMSA_id:040422 AF366043 Marine gamma BB2FL3 prokMSA_id:022319 AF366045 Marine gamma SB6 prokMSA_id:021897 AF366046 Marine gamma SB8 prokMSA_id:046189 AF366047 Marine gamma SB14 prokMSA_id:042442 AF366048 Marine gamma BBFL3 prokMSA_id:031106 AF366049 Marine gamma SB4 prokMSA_id:049271 AF367383 gamma clone D056 prokMSA_id:029727 AF441957 gamma clone CD12B3 prokMSA_id:047667 AF441992 gamma clone CD12E11 prokMSA_id:039398 AF460889 Marine SIMO-IS124 prokMSA_id:056729 AF466888 gamma isolate DGGE band C29.2 prokMSA_id:071510 AF466898 gamma isolate DGGE band A3 prokMSA_id:069447 AF466901 gamma isolate DGGE band A18 prokMSA_id:073582 AF466903 gamma isolate DGGE band A'7 prokMSA_id:072601 AF466930 gamma isolate DGGE band C46 prokMSA_id:019088 AF469293 gamma clone 33-PA76B98 prokMSA_id:020544 AF469322 gamma clone CTD53B prokMSA_id:064127 AF477897 'A45-UMH 8% pond' prokMSA_id:066972 AF503858 Alteromonas sp. 'Sargasso Sea s450co' prokMSA_id:066971 AF503859 Alteromonas sp. 'Sargasso Sea s450ah' prokMSA_id:066968 AF503860 Alteromonas sp. 'Sargasso Sea s450bo' prokMSA_id:058558 AF544060 gamma isolate DGGE gel band Ma prokMSA_id:058557 AF544061 gamma isolate DGGE gel band Mb prokMSA_id:071135 AJ240926 gamma CHAB-IV-40 5' prokMSA_id:072534 AJ240948 gamma CHAB-XI-12 5' prokMSA_id:073414 AJ240950 gamma CHAB-XI-16 5' prokMSA_id:027558 AJ298363 marine gamma AY-85 prokMSA_id:044237 AJ298364 marine gamma AY-86 prokMSA_id:037594 AJ298365 marine gamma AY-84 prokMSA_id:070413 AJ298366 marine gamma AY-85b prokMSA_id:073141 AJ298367 marine gamma BY-92 prokMSA_id:047591 AJ298368 marine gamma AY-91 prokMSA_id:071913 AJ298369 marine gamma BY-93 prokMSA_id:040833 AJ391166 Alteromonas sp. AS-2 prokMSA_id:017952 AJ391167 Alteromonas sp. AS-3 prokMSA_id:047734 AJ391171 Alteromonas sp. AS-7 prokMSA_id:050044 AJ391173 marine gamma AS-9 prokMSA_id:023430 AJ391175 Alteromonas sp. AS-12 prokMSA_id:026137 AJ391178 Alteromonas sp. AS-15 prokMSA_id:087963 AJ561175 Gamma GA-01 isolate GA-01 prokMSA_id:032890 AY038374 gamma clone CD3A1 prokMSA_id:028985 AY038402 clone CD3A8 prokMSA_id:044657 AY038405 gamma clone CD5F4 prokMSA_id:029623 AY038443 gamma clone CD3H2 prokMSA_id:017622 AY038473 gamma clone CD2G2 prokMSA_id:023011 AY038474 gamma clone CD2F10 prokMSA_id:042124 AY077645 gamma clone FD15R prokMSA_id:037942 AY077647 gamma clone FD7F prokMSA_id:065094 AY095718 gamma NL-6 prokMSA_id:065068 AY095747 gamma NL-144R prokMSA_id:055948 AY095748 gamma NL-145F prokMSA_id:065063 AY095756 Alteromonadaceae HI-1 prokMSA_id:065061 AY095757 Alteromonadaceae HI-2 prokMSA_id:065056 AY095763 Alteromonadaceae HI-10 prokMSA_id:065035 AY095785 Alteromonadaceae HI-42 prokMSA_id:055400 AY095786 Alteromonadaceae HI-43 prokMSA_id:065028 AY095792 gamma HI-49 prokMSA_id:065030 AY095793 Alteromonadaceae HI-50 prokMSA_id:071355 AY125910 Alteromonas sp. W9a prokMSA_id:059157 AY136108 Alteromonas macleodii MED64 prokMSA_id:055423 AY149814 gamma SIMO CL-S29-55 prokMSA_id:083546 AY241405 Alteromonas sp. UST010723-011 prokMSA_id:085706 AY241553 Marine HP26 prokMSA_id:085634 AY271300 Alteromonas macleodii prokMSA_id:093148 AY357906 Alteromonas sp. NRL-SS3 prokMSA_id:008866 L10938 Alteromonas macleodii. prokMSA_id:008904 U58342 str. E-32. prokMSA_id:040841 U64010 Alteromonas sp. SCB33 prokMSA_id:008897 U73723 str. 206. prokMSA_id:021428 U78920 gamma prokMSA_id:008871 U85852 Glaciecola punicea str. IC085 ACAM 613. prokMSA_id:008889 U86468 clone pN1-12. prokMSA_id:008888 U86469 clone pN1-12. prokMSA_id:008867 X82145 Alteromonas macleodii IAM 12920 . prokMSA_id:050968 X86459 Alteromonas sp. JLN-A222 strain prokMSA_id:016288 X86460 Alteromonas sp. JLN-A240 strain prokMSA_id:023146 X86461 Alteromonas sp. JLN-A587 strain prokMSA_id:052900 Y18242 Alteromonas macleodii clone 4B281 prokMSA_id:008887 Z77368 str. 1-140 C28. prokMSA_id:040408 Z77564 1-140 C28 2.28.3.20 PSEUDOALTEROMONAS_GROUP 976 seqs 2.28.3.20.1 PAL.HALOPLANKTIS_SUBGROUP 404 seqs 2.28.3.20.1.006 OTU 1 seq prokMSA_id:008920 AB021704 str. KI89A. 2.28.3.20.1.011 OTU 1 seq prokMSA_id:020483 AF194402 beta kps65f 2.28.3.20.1.012 OTU 1 seq prokMSA_id:023639 AF195468 Pseudoalteromonas antarctica 2.28.3.20.1.013 OTU 3 seqs prokMSA_id:073001 AF173962 Pseudoalteromonas prokMSA_id:026362 AF235125 Alteromonas sp. KT0232 prokMSA_id:037967 AY028197 Marine Tw-2 2.28.3.20.1.014 OTU 1 seq prokMSA_id:033026 AB022207 Marine adapted facultatively oligotrophic PAF-2 2.28.3.20.1.015 OTU 1 seq prokMSA_id:038050 AF424080 Pseudoalteromonas sp. MERTZ_2CM_95 2.28.3.20.1.016 OTU 1 seq prokMSA_id:039368 AB022198 Marine facultatively oligotrophic PFO-4 2.28.3.20.1.017 OTU 1 seq prokMSA_id:042355 AB022199 Marine facultatively oligotrophic PFO-5 2.28.3.20.1.018 OTU 1 seq prokMSA_id:043095 AY028205 Marine Tw-10 2.28.3.20.1.019 OTU 1 seq prokMSA_id:045605 AF195473 Pseudoalteromonas kps67f 2.28.3.20.1.020 OTU 1 seq prokMSA_id:047224 AF195472 Pseudoalteromonas kps58rc 2.28.3.20.1.021 OTU 1 seq prokMSA_id:047863 AF424172 gamma MERTZ_21CM_219 2.28.3.20.1.022 OTU 1 seq prokMSA_id:051156 AF195471 Pseudoalteromonas kps64f 2.28.3.20.1.023 OTU 1 seq prokMSA_id:071246 AJ295651 KF-JG30-B15 2.28.3.20.1.024 OTU 1 seq prokMSA_id:073882 AF513405 Pseudoalteromonas sp. 38-4-2 2.28.3.20.1.025 OTU 1 seq prokMSA_id:084028 AY241421 Pseudoalteromonas sp. UST020129-026 2.28.3.20.1.027 OTU 220 seqs prokMSA_id:017585 AB000389 Pseudoalteromonas elyakovii prokMSA_id:052182 AB016267 Alteromonas sp. strain NIBH P3M26 complete prokMSA_id:037970 AB016268 Alteromonas sp. strain NIBH P3M26 complete prokMSA_id:008909 AB019946 Pseudoalteromonas sp. str. FU0605. prokMSA_id:008919 AB019947 Pseudoalteromonas sp. str. AR0307. prokMSA_id:030225 AB022206 Marine adapted facultatively oligotrophic PAF-5 prokMSA_id:032584 AB038036 Pseudoalteromonas sp. SUR560 prokMSA_id:043347 AB042419 Vestimentiferan symbiont TW-4 prokMSA_id:051317 AB049728 Pseudoalteromonas atlantica prokMSA_id:050106 AB051165 Pseudoalteromonas sp. KM-Y92-001 prokMSA_id:073410 AB055791 Pseudoalteromonas sp. Bdeep-1 prokMSA_id:036812 AB055794 Pseudoalteromonas sp. Edeep-1 prokMSA_id:073474 AB055797 Pseudoalteromonas sp. Ideep-1 prokMSA_id:067725 AB062163 clone:pBSB5.22 prokMSA_id:058507 AB072718 clone:pHAuB-45 prokMSA_id:080048 AB100883 Pseudoalteromonas atlantica prokMSA_id:083809 AB106188 Pseudoalteromonas sp. FRA000005 prokMSA_id:084567 AB106189 Pseudoalteromonas sp. FRA000006 prokMSA_id:008914 AF022407 Pseudoalteromonas ANG.ro2 str. ANG.strain ro2. prokMSA_id:008907 AF038846 Pseudoalteromonas gracilis str. B9. prokMSA_id:022902 AF043742 Alteromonas distincta prokMSA_id:008946 AF045560 Pseudoalteromonas antarctica str. N-1. prokMSA_id:008915 AF069665 str. H7. prokMSA_id:008916 AF069666 str. 12-13. prokMSA_id:008910 AF069667 str. H120. prokMSA_id:008925 AF082562 Alteromonas elyakovii str. 40MC KMM 162 . prokMSA_id:008945 AF082563 Alteromonas fuliginea KMM 216 . prokMSA_id:008947 AF082564 Alteromonas distincta KMM 638 . prokMSA_id:008932 AF116188 Pseudoalteromonas elyakovii str. O22. prokMSA_id:008921 AF118018 Pseudoalteromonas RE10F/2 str. RE10F/2. prokMSA_id:037660 AF132858 Pseudoalteromonas sp. 2b prokMSA_id:008934 AF155038 Pseudoalteromonas ER72M2. prokMSA_id:018661 AF173963 Pseudoalteromonas atlantica prokMSA_id:037218 AF195465 Pseudoalteromonas espejiana strain kpa58 prokMSA_id:044061 AF195469 Pseudoalteromonas espejiana strain kbs20 prokMSA_id:054633 AF200214 Psychrophilic marine PS10 complete and -23S intergenic spacer region prokMSA_id:054983 AF200215 Psychrophilic sea water PS16 complete and -23S intergenic spacer region prokMSA_id:054098 AF200216 Psychrophilic marine PS39 complete and -23S intergenic spacer region prokMSA_id:039984 AF214729 Pseudoalteromonas haloplanktis subsp. tetraodonis strain KMM 458 prokMSA_id:031520 AF214730 Pseudoalteromonas haloplanktis subsp. tetraodonis strain IAM 14160 prokMSA_id:023171 AF218245 Pseudoalteromonas sp. prokMSA_id:025530 AF218246 Pseudoalteromonas sp. prokMSA_id:050422 AF235119 Alteromonas sp. KT0903 prokMSA_id:040549 AF237977 Alteromonas sp. MS23 prokMSA_id:070360 AF254110 Abyssal strain AIII3* prokMSA_id:072125 AF262748 Endocytic Noc8 prokMSA_id:071374 AF262749 Endocytic Noc9 prokMSA_id:027484 AF277470 Pseudoalteromonas SIC.153 prokMSA_id:017488 AF277493 Pseudoalteromonas SIC.71302 prokMSA_id:017084 AF277504 Pseudoalteromonas SIC.8123 prokMSA_id:016591 AF277526 Pseudoalteromonas SIC.10345 prokMSA_id:021708 AF277534 Pseudoalteromonas SIC.10409 prokMSA_id:023413 AF280818 Pseudoalteromonas sp. DC1 complete prokMSA_id:020121 AF283571 Pseudoalteromonas sp. A316 prokMSA_id:043190 AF293975 x3 prokMSA_id:023058 AF295034 Pseudoalteromonas sp. EH-2-1 prokMSA_id:018568 AF295035 Pseudoalteromonas sp. P-1P41 prokMSA_id:040554 AF300975 C16S prokMSA_id:037455 AF316142 Pseudoalteromonas issachenkonii strain KMM 3558 prokMSA_id:052879 AF316144 Pseudoalteromonas issachenkonii strain KMM 3549 prokMSA_id:019398 AF354597 gamma Arctic96B-17 prokMSA_id:039843 AF354601 gamma Arctic96AD-16 prokMSA_id:019646 AF354602 gamma Arctic96AD-23 prokMSA_id:071344 AF359543 Marine ATAM173a_36 prokMSA_id:051757 AF366029 Marine gamma LHFL1 prokMSA_id:045946 AF366031 Marine gamma BB2FL1 prokMSA_id:038573 AF366037 Marine gamma SB2 prokMSA_id:033027 AF366040 Marine gamma SWAT9 prokMSA_id:027905 AF366042 Marine gamma BB2AT2 prokMSA_id:037380 AF366044 Marine gamma BB2FL2 prokMSA_id:023979 AF406315 Pseudoalteromonas sp. 400bp31 prokMSA_id:017633 AF419348 Pseudoalteromonas sp. PF30-23 prokMSA_id:021565 AF424169 Pseudoalteromonas sp. MERTZ_0CM_212 prokMSA_id:033697 AF443784 Pseudoalteromonas sp. 22b prokMSA_id:016478 AF456337 Pseudoalteromonas sp. LT13 complete prokMSA_id:017452 AF465359 Pseudoalteromonas sp. UST991130-041 prokMSA_id:053637 AF465385 Pseudoalteromonas sp. UST991130-030 prokMSA_id:034484 AF469273 gamma clone 33-FL61B99 prokMSA_id:052120 AF469274 gamma clone 33-FL89B99 prokMSA_id:024607 AF469275 gamma clone 33-FL132B99 prokMSA_id:043231 AF469301 gamma clone 33-PA5B99 prokMSA_id:049719 AF469302 gamma clone 33-PA22B99 prokMSA_id:042187 AF469303 gamma clone 33-PA37B99 prokMSA_id:019995 AF469304 gamma clone 33-PA49B99 prokMSA_id:029569 AF469307 gamma clone 33-PA60B00 prokMSA_id:042828 AF475096 Pseudoalteromonas porphyrae prokMSA_id:079264 AF505740 Gamma UMB10F prokMSA_id:079319 AF505741 Gamma UMB11F prokMSA_id:079339 AF505745 Gamma UMB20C prokMSA_id:069339 AF513404 Pseudoalteromonas sp. 33-3 prokMSA_id:069549 AF513406 Pseudoalteromonas sp. 39-2-1 prokMSA_id:070621 AF513407 Pseudoalteromonas sp. 31-1-1 prokMSA_id:069466 AF513408 Pseudoalteromonas sp. Pull1 prokMSA_id:069385 AF513409 Pseudoalteromonas sp. Amyl2 prokMSA_id:072083 AF513410 Pseudoalteromonas sp. Amyl4 prokMSA_id:069581 AF513413 Pseudoalteromonas sp. Prot4 prokMSA_id:070470 AF513415 Pseudoalteromonas sp. Prot6 prokMSA_id:060988 AF529062 Pseudoalteromonas citrea strain CIP 105339 prokMSA_id:061131 AF530129 Pseudoalteromonas sp. MGP-2 prokMSA_id:061120 AF530143 Pseudoalteromonas sp. MGP-34 prokMSA_id:086246 AF539765 Pseudoalteromonas sp. R14 prokMSA_id:085564 AF539766 Pseudoalteromonas sp. E29 prokMSA_id:086092 AF539767 Pseudoalteromonas sp. E47 prokMSA_id:084933 AF539768 Pseudoalteromonas sp. E48 prokMSA_id:083123 AF539769 Pseudoalteromonas sp. R44 prokMSA_id:083467 AF539770 Pseudoalteromonas sp. R46 prokMSA_id:085898 AF539771 Pseudoalteromonas sp. E30 prokMSA_id:082882 AF539772 Pseudoalteromonas sp. E33 prokMSA_id:084384 AF539773 Pseudoalteromonas sp. E36 prokMSA_id:084561 AF539774 Pseudoalteromonas sp. R30 prokMSA_id:085933 AF539775 Pseudoalteromonas sp. RE2-12b prokMSA_id:073595 AJ244732 Pseudoalteromonas sp. V4.BE.18 prokMSA_id:071456 AJ244733 Pseudoalteromonas sp. V4.ME.20 prokMSA_id:061782 AJ244734 Pseudoalteromonas sp. V4.BE.01 prokMSA_id:061939 AJ244735 Pseudoalteromonas sp. V4.ME.24 prokMSA_id:070627 AJ244736 Pseudoalteromonas sp. V4.BO.11 prokMSA_id:071384 AJ244737 Pseudoalteromonas sp. V4.BE.14 prokMSA_id:061937 AJ244738 Pseudoalteromonas sp. V4.BE.16 prokMSA_id:061936 AJ244740 Pseudoalteromonas sp. V4.BP.12 prokMSA_id:061935 AJ244741 Pseudoalteromonas sp. V4.BE.34 prokMSA_id:074286 AJ244742 Pseudoalteromonas sp. V4.BO.24 prokMSA_id:061933 AJ244743 Pseudoalteromonas sp. V4.ME.26 prokMSA_id:061930 AJ244744 Pseudoalteromonas sp. V4.ME.28 prokMSA_id:072039 AJ244745 Pseudoalteromonas sp. V4.ME.31 prokMSA_id:061932 AJ244747 Pseudoalteromonas sp. V4.BE.46 prokMSA_id:071431 AJ244748 Pseudoalteromonas sp. V4.BE.07 prokMSA_id:061929 AJ244749 Pseudoalteromonas sp. V4.MO.25 prokMSA_id:072542 AJ244750 Pseudoalteromonas sp. V4.BE.36 prokMSA_id:061924 AJ244751 Pseudoalteromonas sp. V4.ME.10 prokMSA_id:071044 AJ244752 Pseudoalteromonas sp. V4.BE.37 prokMSA_id:071998 AJ295712 Polar sea R7852 prokMSA_id:072158 AJ295713 Polar sea R7076 prokMSA_id:052453 AJ314842 Pseudoalteromonas sp. TE2-2 strain TE2-2 prokMSA_id:035558 AJ314843 Pseudoalteromonas sp. TE1-1 strain TE1-1 prokMSA_id:042494 AJ314844 Pseudoalteromonas sp. SE1-2ox strain SE1-2ox prokMSA_id:041181 AJ314845 Pseudoalteromonas sp. SE1-2red strain SE1-2red prokMSA_id:051268 AJ391188 Pseudoalteromonas sp. AS-27 prokMSA_id:043301 AJ391189 Pseudoalteromonas sp. AS-28 prokMSA_id:020215 AJ391202 Pseudoalteromonas sp. AS-41 prokMSA_id:046977 AJ414129 Pseudoalteromonas sp. TG4-11 strain TG4-11 prokMSA_id:046753 AJ417594 Pseudoalteromonas agarovorans strain KMM 255 prokMSA_id:059526 AJ507251 Pseudoalteromonas sp. KMM 3635 strain KMM 3635 prokMSA_id:075690 AJ519789 Pseudoalteromonas sp. AC-205 prokMSA_id:077092 AJ519790 Pseudoalteromonas sp. AC-144 prokMSA_id:085625 AJ557840 Marine arctic deep-sea FK8a prokMSA_id:083930 AJ557853 Marine arctic deep-sea FK8b prokMSA_id:086404 AJ557855 Marine arctic deep-sea HA10a prokMSA_id:083556 AJ557870 Marine arctic deep-sea HA10b prokMSA_id:087009 AJ561153 gamma clone RB_OIL 01 prokMSA_id:036441 AY028199 Marine Tw-4 prokMSA_id:030396 AY028200 Marine Tw-5 prokMSA_id:037299 AY028202 Marine Tw-7 prokMSA_id:074244 AY028203 Marine Tw-8 prokMSA_id:033435 AY028206 Marine BB2AT2 prokMSA_id:046309 AY040229 Pseudoalteromonas sp. KMM 3548 prokMSA_id:021879 AY040230 Pseudoalteromonas sp. KMM 520 prokMSA_id:067502 AY092074 Pseudoalteromonas sp. 39 strain 39 prokMSA_id:055404 AY092080 Pseudoalteromonas sp. 86 strain 86 prokMSA_id:059775 AY133422 clone BB2_17 prokMSA_id:055382 AY133423 clone BB2_15 prokMSA_id:076654 AY164641 Pseudoalteromonas sp. KJ 2-4 prokMSA_id:081103 AY167313 Pseudomonas sp. ANT9287 prokMSA_id:082342 AY167328 Pseudoalteromonas sp. ANT9377 prokMSA_id:081950 AY167333 Pseudoalteromonas sp. ANT9388 prokMSA_id:077391 AY170899 Psychrophilic marine WP-1 prokMSA_id:084881 AY177718 Alteromonadaceae T8 prokMSA_id:079398 AY187028 Pseudoalteromonas sp. MMM18 prokMSA_id:085191 AY227707 Pseudoalteromonas sp. 'turbot' prokMSA_id:085635 AY230003 Pseudoalteromonas antarctica strain PS18 prokMSA_id:085467 AY241416 Alteromonas sp. UST020129-030 prokMSA_id:085412 AY241422 Pseudoalteromonas sp. UST020129-012 prokMSA_id:082715 AY241426 Pseudoalteromonas sp. UST020129-029 prokMSA_id:082918 AY241427 Pseudoalteromonas sp. UST020129-028 prokMSA_id:083367 AY241428 Pseudoalteromonas sp. UST020129-019 prokMSA_id:085055 AY241429 Pseudoalteromonas sp. UST020129-007 prokMSA_id:083200 AY243365 Pseudoalteromonas sp. CAM25 prokMSA_id:086352 AY243366 Pseudoalteromonas sp. CAM36 prokMSA_id:094121 AY277258 Pseudoalteromonas sp. H11 prokMSA_id:094269 AY277259 Pseudoalteromonas sp. H12 prokMSA_id:093800 AY277260 Pseudoalteromonas sp. H13 prokMSA_id:093984 AY277262 Pseudoalteromonas sp. H15 prokMSA_id:094073 AY277263 Pseudoalteromonas sp. H22 prokMSA_id:093693 AY277264 Pseudoalteromonas sp. H92 prokMSA_id:093369 AY277269 Pseudoalteromonas sp. H4 prokMSA_id:093624 AY277272 Pseudoalteromonas sp. H18 prokMSA_id:094114 AY277273 Pseudoalteromonas sp. H21 prokMSA_id:089856 AY305857 Pseudoalteromonas sp. SM9913 complete prokMSA_id:091170 AY345483 K2-82 prokMSA_id:092918 AY354848 gamma clone PLY-P3-31 prokMSA_id:093309 AY360490 clone BSB10-364m prokMSA_id:093739 AY360501 clone BSB19-115m prokMSA_id:093697 AY360513 clone BSB8-217m prokMSA_id:093678 AY360514 clone BSB9-89m prokMSA_id:096499 AY382587 Pseudoalteromonas sp. 1-1-10-2 prokMSA_id:097790 AY383040 Pseudoalteromonas sp. 2-3-6-2 prokMSA_id:097227 AY383041 Pseudoalteromonas sp. 4-1-6-1 prokMSA_id:095906 AY387858 Pseudoalteromonas sp. KMM 3562 prokMSA_id:008924 L35470 clone SAR 160. prokMSA_id:008941 L35471 clone SAR 166. prokMSA_id:008913 U85855 Pseudoalteromonas sp. str. MB8-11. prokMSA_id:008926 U85856 Pseudoalteromonas sp. str. IC006. prokMSA_id:008927 U85857 Pseudoalteromonas sp. str. MB6-03. prokMSA_id:008928 U85858 Pseudoalteromonas sp. str. MB8-02. prokMSA_id:008929 U85859 Pseudoalteromonas sp. str. IC013. prokMSA_id:008930 U85860 Pseudoalteromonas sp. str. MB6-05. prokMSA_id:008931 U85861 Pseudoalteromonas sp. str. SW08. prokMSA_id:008906 U85862 Pseudoalteromonas sp. str. SW29. prokMSA_id:008935 X67024 Pseudoalteromonas haloplanktis subsp. haloplanktis ATCC 14393 . prokMSA_id:008912 X82134 Pseudoalteromonas atlantica IAM 12927 . prokMSA_id:008908 X82136 Pseudoalteromonas carrageenovora IAM 12662 . prokMSA_id:008918 X82139 Pseudoalteromonas haloplanktis subsp. tetraodonis str. GFC IAM prokMSA_id:008942 X82143 Pseudoalteromonas espejiana NCIMB 2127 . prokMSA_id:008905 X82146 Pseudoalteromonas nigrifaciens NCIMB 8614 . prokMSA_id:045332 X86462 Pseudoalteromonas sp. JLN-A013 strain prokMSA_id:022539 X86464 Pseudoalteromonas sp. JLN-T413 strain prokMSA_id:031435 X86465 Pseudoalteromonas sp. JLN-T418 strain prokMSA_id:020578 X86466 Pseudoalteromonas sp. JLN-U1 strain prokMSA_id:008944 X98336 Pseudoalteromonas antarctica str. NF3 CECT 4664. prokMSA_id:031585 Y15322 Alteromonas sp. isolate PRLIST1 prokMSA_id:030484 Z73457 species isolate Boom-7m-21 2.28.3.20.1.028 OTU 1 seq prokMSA_id:084701 AF539778 Pseudoalteromonas sp. RE2-11 2.28.3.20.1.029 OTU 1 seq prokMSA_id:093609 AY360498 clone BSB15-217m 2.28.3.20.1.999 poor quality 164 seqs prokMSA_id:036680 AB022705 Adapted facultatively oligotrophic PAF-3 prokMSA_id:039938 AB022707 Adapted facultatively oligotrophic PAF-1 prokMSA_id:052891 AB042515 methane-seep sediment SB-2 prokMSA_id:081930 AB105549 Pseudoalteromonas tetraodonis strain: FRA000003 prokMSA_id:082408 AB105550 Pseudoalteromonas tetraodonis strain: FRA000004 prokMSA_id:082902 AB106187 Pseudoalteromonas sp. FRA000005 prokMSA_id:086100 AB106196 Pseudoalteromonas sp. FRA000014 prokMSA_id:084883 AB106197 Pseudoalteromonas sp. FRA000014 prokMSA_id:082533 AB106200 Pseudoalteromonas sp. FRA000017 prokMSA_id:084194 AB106201 Pseudoalteromonas sp. FRA000017 prokMSA_id:084650 AB106202 Pseudoalteromonas sp. FRA000018 prokMSA_id:086181 AB106203 Pseudoalteromonas sp. FRA000018 prokMSA_id:084984 AB106204 Pseudoalteromonas sp. FRA000019 prokMSA_id:083202 AB106205 Pseudoalteromonas sp. FRA000019 prokMSA_id:084304 AB106210 Pseudoalteromonas tetraodonis strain: FRA000024 prokMSA_id:085877 AB106214 Pseudoalteromonas sp. FRA000027 prokMSA_id:094139 AB118664 Gamma Ao-1 strain:Ao-1 prokMSA_id:094270 AB118665 Gamma Ao-2 strain:Ao-2 prokMSA_id:093588 AB118667 Gamma Ha-3 strain:Ha-3 prokMSA_id:093583 AB118668 Gamma B-1 strain:B-1 prokMSA_id:093428 AB118669 Gamma B-7 strain:B-7 prokMSA_id:094230 AB118670 Gamma S-1 strain:S-1 prokMSA_id:093506 AB118671 Gamma S-6 strain:S-6 prokMSA_id:093298 AB118676 Gamma C-18 strain:C-18 prokMSA_id:043654 AF017792 Pseudoalteromonas-like S3C7 prokMSA_id:052072 AF017793 Pseudoalteromonas-like S3C8 prokMSA_id:049858 AF017794 Pseudoalteromonas-like S3C13 prokMSA_id:018422 AF017795 Pseudoalteromonas-like S3C14 prokMSA_id:074285 AF022408 Pseudoalteromonas sp. Egg.D8 prokMSA_id:023762 AF025322 Pseudoalteromonas sp. KAT9 prokMSA_id:008922 AF025551 Pseudoalteromonas haloplanktis subsp. tetraodonis str. MED8. prokMSA_id:008938 AF025557 Pseudoalteromonas atlantica str. MED14. prokMSA_id:039954 AF025574 Pseudoalteromonas sp. ANT4 prokMSA_id:024098 AF025576 Pseudoalteromonas sp. ANT6 prokMSA_id:008923 AF025578 Pseudoalteromonas haloplanktis subsp. tetraodonis str. ANT8. prokMSA_id:028471 AF056461 Alteromonas sp. LX1 prokMSA_id:070703 AF069653 North Sea H71 prokMSA_id:018944 AF069654 North Sea 12-41 prokMSA_id:033740 AF069655 North Sea H103 prokMSA_id:021593 AF069656 North Sea H105 prokMSA_id:019632 AF069657 North Sea H108 prokMSA_id:018846 AF069658 North Sea 10-77 prokMSA_id:017914 AF069659 North Sea 13-15 prokMSA_id:044656 AF069660 North Sea H118 prokMSA_id:050551 AF069661 North Sea 10-94 prokMSA_id:070098 AF069662 North Sea 10-33 prokMSA_id:074589 AF069663 North Sea 6-42 prokMSA_id:072052 AF069664 North Sea 6-62 prokMSA_id:036870 AF114522 gamma 400m-ATT-16 complete prokMSA_id:024834 AF114537 gamma 400m-FREE-8 prokMSA_id:047563 AF114554 gamma 400m-FREE-39 prokMSA_id:017776 AF114576 gamma 400m-FREE-39 prokMSA_id:046198 AF188330 Pseudoalteromonas sp. SKA18 prokMSA_id:039987 AF195466 Pseudoalteromonas espejiana strain kpa22f prokMSA_id:033742 AF195467 Pseudoalteromonas gracilis prokMSA_id:018278 AF196331 Pseudoalteromonas sp. NOW18 prokMSA_id:043586 AF245647 gamma NAC60-6 prokMSA_id:052183 AF251772 Pseudoalteromonas sp. Etwt1.M7p-a prokMSA_id:029594 AF255622 Pseudoalteromonas sp. O6N-52 prokMSA_id:048604 AF261041 Pseudoalteromonas haloplanktis subsp. tetraodonis prokMSA_id:025602 AF261054 Pseudoalteromonas sp. SKA32 prokMSA_id:031805 AF277475 Pseudoalteromonas SIC.42105 prokMSA_id:016303 AF277535 Pseudoalteromonas SIC.1059 prokMSA_id:020825 AF283855 Arctic sea ice AWS-7M1 prokMSA_id:028435 AF300976 BSislt4 prokMSA_id:031002 AF300978 BSislt25 prokMSA_id:022532 AF300979 BSislt23 prokMSA_id:028922 AF323549 Pseudoalteromonas sp. BA1 prokMSA_id:045809 AF323550 Pseudoalteromonas sp. BA2 prokMSA_id:070769 AF323552 Bay of Fundy BA10-1B prokMSA_id:049776 AF323556 Bay of Fundy BA10-2A prokMSA_id:070892 AF323558 Bay of Fundy BA10-3B prokMSA_id:066709 AF325143 Pseudoalteromonas haloplanktis prokMSA_id:056142 AF325144 Pseudoalteromonas distincta prokMSA_id:066707 AF325145 Pseudoalteromonas haloplanktis prokMSA_id:066708 AF325147 Pseudoalteromonas sp. D23 prokMSA_id:045984 AF333093 Pseudoalteromonas sp. B4 prokMSA_id:020391 AF333094 Pseudoalteromonas sp. D1 prokMSA_id:053621 AF333095 D25 prokMSA_id:037735 AF366028 Marine gamma JSL10-1 prokMSA_id:043777 AF366032 Marine gamma BBFL4 prokMSA_id:043065 AF366038 Marine gamma SWAT1 prokMSA_id:049555 AF366041 Marine gamma LHAT3 prokMSA_id:039981 AF367390 gamma clone D063 prokMSA_id:069094 AF466918 gamma isolate DGGE band B'7 prokMSA_id:045374 AF469272 gamma clone 33-FL4B99 prokMSA_id:073362 AF488782 Marine gamma O1K prokMSA_id:066553 AF502595 Pseudoalteromonas sp. 27 prokMSA_id:071436 AF513403 Pseudoalteromonas sp. 7-1-2 prokMSA_id:069099 AF513411 Pseudoalteromonas sp. Prot2 prokMSA_id:073526 AF513412 Pseudoalteromonas sp. Prot3 prokMSA_id:071307 AF513414 Pseudoalteromonas sp. Prot5 prokMSA_id:056637 AF513433 Pseudomonas sp. Lip4 prokMSA_id:072908 AJ244739 Pseudoalteromonas sp. V12.BF.11 prokMSA_id:073464 AJ311965 gamma strain OS-137 prokMSA_id:072816 AJ318941 Pseudoalteromonas sp. SYS5-03 strain SYS5-03 prokMSA_id:047341 AJ318942 Pseudoalteromonas sp. TG15-07 strain TG15-07 prokMSA_id:054141 AJ318943 Pseudoalteromonas sp. TG10-11 strain TG10-11 prokMSA_id:018960 AJ318944 Pseudoalteromonas sp. MA1-13 strain MA1-13 prokMSA_id:028711 AJ318945 Pseudoalteromonas sp. AF1-01 strain AF1-01 prokMSA_id:045911 AJ318946 Pseudoalteromonas sp. OFC1-21 strain OFC1-21 prokMSA_id:041454 AJ344453 Pseudoalteromonas sp. strain OI-1-3 prokMSA_id:031474 AJ344454 Pseudoalteromonas sp. strain OI-11-3 prokMSA_id:053101 AJ344455 Pseudoalteromonas sp. strain SI-1-1 prokMSA_id:048532 AJ344457 Pseudoalteromonas sp. strain SI-1-2 prokMSA_id:046333 AJ344458 Pseudoalteromonas sp. strain SI-2-5 prokMSA_id:032697 AJ344459 Pseudoalteromonas sp. strain SI-3-1 prokMSA_id:049353 AJ344460 Pseudoalteromonas sp. strain SI-6-3 prokMSA_id:048240 AJ344461 Pseudoalteromonas sp. strain SI-14-1 prokMSA_id:021482 AJ344462 Pseudoalteromonas sp. strain SI-15-2 prokMSA_id:022481 AJ344464 Pseudoalteromonas sp. strain MBT9 prokMSA_id:052411 AJ391165 Pseudoalteromonas sp. AS-1 prokMSA_id:054702 AJ414127 Pseudoalteromonas sp. SYS3-02 strain SYS3-02 prokMSA_id:073919 AJ414131 Pseudoalteromonas sp. TG8-01 strain TG8-01 prokMSA_id:039693 AJ414133 Pseudoalteromonas sp. TG3-15 strain TG3-15 prokMSA_id:087106 AJ561141 gamma clone ANT-RB 09 prokMSA_id:087763 AJ561154 gamma clone RB_OIL 04 prokMSA_id:086824 AJ561165 gamma clone RB_OIL 63 prokMSA_id:086732 AJ561179 Gamma GA-07 isolate GA-07 prokMSA_id:086724 AJ561180 Gamma GA-09 isolate GA-09 prokMSA_id:087335 AJ561192 Gamma GA-37 isolate GA-37 prokMSA_id:087348 AJ561193 Gamma GA-38 isolate GA-38 prokMSA_id:087430 AJ561194 Gamma GA-40 isolate GA-40 prokMSA_id:023649 AY038417 clone CD5F11 prokMSA_id:067185 AY095105 Marine SIMO IS-S76-242 prokMSA_id:066604 AY095477 Marine SIMO IS-S73-243 prokMSA_id:055649 AY095579 Alteromonadaceae pV-7 prokMSA_id:074712 AY095829 Alteromonadaceae ARCT2-15 prokMSA_id:066131 AY100675 Alteromonas sp. U32 prokMSA_id:066128 AY100677 Pseudoalteromonas sp. L1 prokMSA_id:066129 AY100678 Psychrophilic sea water L17 prokMSA_id:066126 AY100679 Psychrophilic sea water L20 prokMSA_id:066127 AY100680 Pseudoalteromonas agarovorans prokMSA_id:056707 AY100685 Pseudoalteromonas sp. G3 prokMSA_id:066119 AY100686 Marine Gu4 prokMSA_id:063189 AY117756 Pseudoalteromonas sp. isolate DGGE band L-3 prokMSA_id:060707 AY125909 Pseudoalteromonas sp. W13a prokMSA_id:059767 AY133424 clone BB2_69 prokMSA_id:075386 AY158030 Pseudoalteromonas sp. XIL39 prokMSA_id:075466 AY158040 Marine XIL32 prokMSA_id:075647 AY162941 clone ZB-Z61 prokMSA_id:080992 AY198116 Pseudoalteromonas sp. HLD prokMSA_id:091787 AY266423 Marine SIMO-1584 prokMSA_id:091966 AY266433 Marine SIMO-1594 prokMSA_id:091167 AY266436 Marine SIMO-1591 prokMSA_id:091838 AY266438 Marine SIMO-1590 prokMSA_id:093547 AY277271 Pseudoalteromonas sp. H17 prokMSA_id:094707 AY321530 Marine 13687 prokMSA_id:060693 BD015402 Pseudoalteromonas sp. variants culture supernatants and killed cells thereof antiviral agents pathogenic viruses of marine crustaceans and environment-improving agents these animals prokMSA_id:008917 D11171 Pseudoalteromonas espejiana IAM 12640 . prokMSA_id:008943 D11172 Pseudoalteromonas haloplanktis subsp. haloplanktis ATCC 14393 . prokMSA_id:008911 D11173 Pseudoalteromonas nigrifaciens IAM 13010. prokMSA_id:042092 U64012 Pseudoalteromonas sp. SCB35 prokMSA_id:047867 U64020 Pseudoalteromonas sp. SCB43 prokMSA_id:018837 U78928 gamma prokMSA_id:008939 X74709 Moritella marina str. MP-1 ATCC 15381 . prokMSA_id:008940 X82140 Pseudoalteromonas undina NCIMB 2128 . prokMSA_id:042883 X86463 Pseudoalteromonas sp. JLN-A238 strain prokMSA_id:049172 Y18239 Pseudoalteromonas haloplanktis isolate CH-B126 prokMSA_id:041837 Y18241 Pseudoalteromonas haloplanktis isolate CH-B426 prokMSA_id:008936 Z77371 str. 1-140 C30. prokMSA_id:008937 Z77389 str. 1-140 C8. prokMSA_id:008933 Z77466 str. 1-700 C45. prokMSA_id:027793 Z77566 1-140 C30 2.28.3.20.2 PAL.AURANTIA_SUBGROUP 140 seqs 2.28.3.20.2.001 OTU 1 seq prokMSA_id:008973 Z25522 Pseudoalteromonas tunicata. 2.28.3.20.2.006 OTU 2 seqs prokMSA_id:008962 AF159671 clone HstpL94. prokMSA_id:060461 AY007201 Alteromonas sp. O-TC11A 2.28.3.20.2.007 OTU 1 seq prokMSA_id:008958 X82138 Pseudoalteromonas denitrificans ATCC 43337 . 2.28.3.20.2.008 OTU 5 seqs prokMSA_id:073064 AF366001 Marine CFB-group SB15 prokMSA_id:021787 AF366039 Marine gamma SWAT7 prokMSA_id:022024 AF366050 Marine gamma SWAT5 prokMSA_id:008952 X82135 Pseudoalteromonas aurantia ATCC 33046 . prokMSA_id:008957 X82137 Pseudoalteromonas citrea NCIMB 1889 . 2.28.3.20.2.010 OTU 7 seqs prokMSA_id:008964 AF172987 Pseudoalteromonas UL12 str. UL12. prokMSA_id:008965 AF172988 Pseudoalteromonas UL13 str. UL13. prokMSA_id:008954 AF172989 Pseudoalteromonas UL14 str. UL14. prokMSA_id:008955 AF172990 Pseudoalteromonas UL15 str. UL15. prokMSA_id:008956 AF172991 Pseudoalteromonas UL1 str. UL1. prokMSA_id:044193 AF277522 Pseudoalteromonas SIC.999 prokMSA_id:085529 AF539776 Pseudoalteromonas sp. R6 2.28.3.20.2.015 OTU 1 seq prokMSA_id:019424 AF295593 Pseudoalteromonas sp. ACEM-4 2.28.3.20.2.016 OTU 1 seq prokMSA_id:020333 AB040467 Pseudoalteromonas sp. R 2.28.3.20.2.017 OTU 1 seq prokMSA_id:021860 AF269001 SBR2113 2.28.3.20.2.020 OTU 1 seq prokMSA_id:029392 AF343949 Pseudoalteromonas sp. NBF28 2.28.3.20.2.022 OTU 59 seqs prokMSA_id:008950 AB029824 Pseudoalteromonas S511-1 str. S511-1. prokMSA_id:034196 AB055785 Pseudoalteromonas sp. Bsur-1 prokMSA_id:079872 AB090232 Pseudoalteromonas piscicida strain:IAM 12932 prokMSA_id:080498 AB090233 Pseudoalteromonas piscicida strain:O-7 prokMSA_id:008968 AF007286 Pseudoalteromonas peptidysin str. F12-50-A1. prokMSA_id:008970 AF030381 Pseudoalteromonas Y str. Y. prokMSA_id:008969 AF081498 Pseudoalteromonas piscicida str. Cura-d. prokMSA_id:008949 AF118019 Pseudoalteromonas RE10F/5 str. RE10F/5. prokMSA_id:008967 AF144036 Pseudoalteromonas piscicida KMM 636. prokMSA_id:042816 AF195470 Pseudoalteromonas sp. kbs19 prokMSA_id:030320 AF224867 clone Car70fc prokMSA_id:046627 AF227237 Pseudoalteromonas sp. A25 prokMSA_id:029044 AF227238 Pseudoalteromonas sp. A28 prokMSA_id:071107 AF284230 Pseudoalteromonas sp. 05 prokMSA_id:023900 AF297662 Pseudoalteromonas piscicida clone NCIMB645 prokMSA_id:026328 AF297958 Pseudoalteromonas flavipulchra prokMSA_id:039091 AF297959 Pseudoalteromonas piscicida prokMSA_id:031455 AF316890 Pseudoalteromonas ruthenica strain KMM290 prokMSA_id:040223 AF316891 Pseudoalteromonas ruthenica strain KMM300 prokMSA_id:044603 AF317677 Pseudoalteromonas sp. NRRL B-30083 prokMSA_id:039068 AF343924 Pseudoalteromonas sp. NBF3 prokMSA_id:025204 AF343936 Pseudoalteromonas sp. NBF15 prokMSA_id:038340 AF343945 Pseudoalteromonas sp. NBF24 prokMSA_id:046834 AF343946 Pseudoalteromonas sp. NBF25 prokMSA_id:047027 AF465392 Pseudoalteromonas sp. UST991130-004 prokMSA_id:027462 AF465396 Pseudoalteromonas sp. UST991130-008 prokMSA_id:084026 AF539777 Pseudoalteromonas sp. RE2-5b prokMSA_id:043482 AJ391190 Pseudoalteromonas sp. AS-29 prokMSA_id:071138 AJ391204 Pseudoalteromonas sp. AS-43 prokMSA_id:093875 AJ551102 Pseudoalteromonas sp. wp24 isolate wp24 prokMSA_id:093880 AJ551103 Pseudoalteromonas sp. wp25 isolate wp25 prokMSA_id:093434 AJ551105 Pseudoalteromonas sp. wp27 isolate wp27 prokMSA_id:094165 AJ551109 Pseudoalteromonas sp. wp32 isolate wp32 prokMSA_id:093313 AJ551121 Pseudoalteromonas sp. mp7 isolate mp7 prokMSA_id:093544 AJ551132 Pseudoalteromonas sp. es32 isolate es32 prokMSA_id:093951 AJ551143 Pseudoalteromonas sp. An2 isolate An2 prokMSA_id:089387 AJ575803 Bacillus sp. LEBHAM-01 strain LEBHAM-01 prokMSA_id:093399 AJ581533 Pseudoalteromonas sp. X153 isolate X153 prokMSA_id:064951 AY095794 gamma CS4K-1 prokMSA_id:064943 AY095799 gamma CS4K-106 prokMSA_id:064941 AY095801 gamma CS4K-109 prokMSA_id:064933 AY095811 gamma CS4K-217 prokMSA_id:064934 AY095813 gamma CS4K-221 prokMSA_id:056528 AY095816 gamma CS4K-233 prokMSA_id:064928 AY095818 Alteromonadaceae CS4K-236 prokMSA_id:080967 AY220709 gamma clone WCPAP5 prokMSA_id:082699 AY241401 Pseudolateromonas sp. UST010723-006 prokMSA_id:086076 AY241415 Pseudoalteromonas sp. UST010620-005 prokMSA_id:082619 AY241430 Pseudoalteromonas sp. UST020129-006 prokMSA_id:097702 AY338404 Pseudoalteromonas sp. TAB 4.2 prokMSA_id:091923 AY345372 JB10 prokMSA_id:091287 AY345481 K2-89o prokMSA_id:097834 AY394862 Pseudoalteromonas sp. EPR 1 prokMSA_id:097298 AY394863 Pseudoalteromonas sp. EPR 2 prokMSA_id:008948 U15114 Pele's Vents clone PVB_18. prokMSA_id:008963 U80834 Pseudoalteromonas S9 str. S9. prokMSA_id:008961 X82144 Pseudoalteromonas luteoviolacea NCIMB 1893 . prokMSA_id:008972 X82147 Pseudoalteromonas rubra ATCC 29570 . prokMSA_id:008971 X82215 Pseudoalteromonas piscicida ATCC 15057 . 2.28.3.20.2.023 OTU 1 seq prokMSA_id:037333 AF465394 Gamma UST991130-006 2.28.3.20.2.024 OTU 1 seq prokMSA_id:044316 AB022621 gamma SB06 2.28.3.20.2.025 OTU 1 seq prokMSA_id:044419 AF224832 clone Car43fc 2.28.3.20.2.026 OTU 1 seq prokMSA_id:079171 AF332880 Pseudoalteromonas sp. O-BC30 2.28.3.20.2.027 OTU 1 seq prokMSA_id:091394 AY344387 clone K60-14 2.28.3.20.2.028 OTU 1 seq prokMSA_id:098787 AY394864 Pseudoalteromonas sp. EPR 3 2.28.3.20.2.999 poor quality 55 seqs prokMSA_id:034655 AB041295 ECS25 prokMSA_id:071818 AB055788 Pseudoalteromonas sp. Esur-1 prokMSA_id:052487 AF025544 Gamma MED1 prokMSA_id:034990 AF025547 Pseudoalteromonas sp. MED4 prokMSA_id:033204 AF025550 Pseudoalteromonas sp. MED7 prokMSA_id:008953 AF025570 Pseudoalteromonas aurantia str. MED27. prokMSA_id:037794 AF055816 Marine 'Bird Shoal 4-6' prokMSA_id:020081 AF056470 Alteromonas sp. LX10 prokMSA_id:026998 AF186438 sponge symbiont PAUC53 prokMSA_id:030703 AF224784 clone Car133fb prokMSA_id:033835 AF224818 clone Car92rb prokMSA_id:025704 AF224835 clone Car48fc prokMSA_id:042933 AF224836 clone Car51fc prokMSA_id:017282 AF231426 Humic substances-degrading HS53 prokMSA_id:016491 AF231428 Humic substances-degrading HS90 prokMSA_id:017253 AF261042 Pseudoalteromonas sp. SKA20 prokMSA_id:045085 AF261051 Pseudoalteromonas citrea prokMSA_id:031760 AF287043 gamma EC-B22 prokMSA_id:066710 AF325146 Pseudoalteromonas sp. D15 prokMSA_id:040251 AF343932 Pseudoalteromonas sp. NBF11 prokMSA_id:070053 AF357186 Gamma C908 prokMSA_id:068215 AF365508 clone BM89MF5BD3 prokMSA_id:055315 AF365545 clone gBT49MF4BA4 prokMSA_id:045726 AF366030 Marine gamma JSL9-1 prokMSA_id:040636 AF366033 Marine gamma JSL12-1 prokMSA_id:024083 AF366034 Marine gamma JSL12-2 prokMSA_id:064820 AF434117 gamma clone M3-1-16 prokMSA_id:026916 AF441967 gamma clone CD12A8 prokMSA_id:038728 AF441988 gamma clone CD12F5 prokMSA_id:045456 AF441994 gamma clone CD12E12 prokMSA_id:033598 AF460868 Marine SIMO-IS104 prokMSA_id:069611 AF466889 gamma isolate DGGE band C30 prokMSA_id:058256 AF544647 gamma DGGE gel band H7-4 prokMSA_id:020923 AJ250898 marine gamma DIL-3 prokMSA_id:057048 AJ518497 clone Qui2P2-13 prokMSA_id:029992 AY038401 gamma clone CD3C8 prokMSA_id:033573 AY038471 gamma clone CD2G11 prokMSA_id:064937 AY095806 gamma CS4K-201 prokMSA_id:064936 AY095807 gamma CS4K-204 prokMSA_id:064932 AY095815 Alteromonadaceae CS4K-229 prokMSA_id:064927 AY095819 Alteromonadaceae CS4K-238 prokMSA_id:056577 AY095906 Alteromonadaceae SH-200F prokMSA_id:066124 AY100683 Marine L52 prokMSA_id:081202 AY217773 Pseudoalteromonas luteoviolacea strain S2 prokMSA_id:091768 AY266441 Marine SIMO-1595 prokMSA_id:087309 AY270184 Pseudoalteromonas sp. 108 prokMSA_id:087241 AY270186 Pseudoalteromonas sp. 155 prokMSA_id:090019 AY309012 Pseudoalteromonas sp. M101 prokMSA_id:092755 AY357900 Pseudoalteromonas sp. NRL-TS1 prokMSA_id:049523 U78929 gamma prokMSA_id:008966 X82141 Pseudoalteromonas piscicida str. C201 CERBOM. prokMSA_id:008959 X84637 unnamed organism. prokMSA_id:008951 X89346 clone 11w103. prokMSA_id:008960 Z77373 str. 1-140 C32. prokMSA_id:016328 Z77567 1-140 C32 2.28.3.20.3 PAL.BACTERIOLYTICA 4 seqs 2.28.3.20.3.001 OTU 1 seq prokMSA_id:008974 D89929 Pseudoalteromonas str. E8R IAM 14595 . 2.28.3.20.3.002 OTU 1 seq prokMSA_id:032525 X92128 sp. Lake Nakuru isolate 20N1 2.28.3.20.3.003 OTU 1 seq prokMSA_id:050424 AB063324 Marine B-10-31 2.28.3.20.3.999 poor quality 1 seq prokMSA_id:045956 AY038559 gamma clone CD4E1 2.28.3.20.4 MRT.MARINA_SUBGROUP 181 seqs 2.28.3.20.4.002 OTU 1 seq prokMSA_id:009037 AF187080 str. KMG427. 2.28.3.20.4.003 OTU 1 seq prokMSA_id:009036 U85908 Shewanella hanedai str. IC050 ACAM 585. 2.28.3.20.4.004 OTU 1 seq prokMSA_id:009034 AB013825 str. 3.b. 2.28.3.20.4.008 OTU 1 seq prokMSA_id:009029 AF022413 Shewanella ANG.231 str. ANG.strain 231. 2.28.3.20.4.009 OTU 1 seq prokMSA_id:009027 AF022402 Shewanella ANG.209 str. ANG.strain 209. 2.28.3.20.4.015 OTU 1 seq prokMSA_id:009020 X54744 barophile WHB 46 clone 1. 2.28.3.20.4.016 OTU 1 seq prokMSA_id:009019 D21229 Vibrio sp. str. DB5501. 2.28.3.20.4.017 OTU 1 seq prokMSA_id:009017 AB013839 Shewanella sp. str. 3-8.C. 2.28.3.20.4.018 OTU 1 seq prokMSA_id:009016 D21221 Vibrio sp. str. DB6101. 2.28.3.20.4.019 OTU 1 seq prokMSA_id:009014 X54745 barophile WHB 46 clone 2. 2.28.3.20.4.029 OTU 1 seq prokMSA_id:008996 D21222 Vibrio sp. str. DB6705. 2.28.3.20.4.030 OTU 1 seq prokMSA_id:008994 AB013842 Shewanella sp. str. 7-1.E. 2.28.3.20.4.033 OTU 1 seq prokMSA_id:008990 U91587 Moritella PE36 str. PE36. 2.28.3.20.4.037 OTU 1 seq prokMSA_id:020204 AB059262 Moritella sp. PS10-13 2.28.3.20.4.038 OTU 1 seq prokMSA_id:023606 AB059265 Gamma MTW-13 2.28.3.20.4.039 OTU 1 seq prokMSA_id:032285 AB059263 Gamma PS12-4 2.28.3.20.4.041 OTU 6 seqs prokMSA_id:009005 AF003548 Shewanella woodyi str. MS1. prokMSA_id:009004 AF003549 Shewanella woodyi str. MS32 DSM 12036 . prokMSA_id:033140 AF425750 Shewanella sp. clone MERTZ_0CM_368 prokMSA_id:061124 AF530132 Shewanella sp. MGP-5 prokMSA_id:009038 U91589 Shewanella hanedai ATCC 35256. prokMSA_id:009035 X82132 Shewanella hanedai CIP 103207 . 2.28.3.20.4.042 OTU 1 seq prokMSA_id:033146 AF425759 alpha clone MERTZ_0CM_46 2.28.3.20.4.043 OTU 1 seq prokMSA_id:058505 AB072716 clone:pHAuB-33 2.28.3.20.4.045 OTU 1 seq prokMSA_id:043120 AB059264 Shewanella sp. MTW-1 2.28.3.20.4.046 OTU 62 seqs prokMSA_id:009022 AB003189 Shewanella benthica str. PT99. prokMSA_id:009012 AB008796 Shewanella benthica str. DB21MT-2. prokMSA_id:009001 AB013822 Shewanella sp. str. 16.k. prokMSA_id:009013 AB013838 Shewanella sp. str. 7-10.B. prokMSA_id:009009 AB015574 str. BD6-4. prokMSA_id:044629 AB038035 Shewanella sp. SG133 prokMSA_id:067739 AB062146 clone:pBSB1.15 prokMSA_id:056028 AB081757 Shewanella sp. IK-1 prokMSA_id:060933 AB081758 Shewanella sp. HZ17 prokMSA_id:060929 AB081759 Shewanella sp. 2T11 prokMSA_id:060928 AB081760 Shewanella sp. HRKA1 prokMSA_id:060926 AB081761 Shewanella sp. HRKC24 prokMSA_id:055880 AB081762 Shewanella sp. SM2-1 prokMSA_id:083672 AB094597 Shewanella surugaensis strain:c959 prokMSA_id:083294 AB094598 Shewanella kaireiae strain:c931 prokMSA_id:009032 AF011335 Shewanella pealeana str. ANG-SQ1. prokMSA_id:009026 AF022401 Shewanella ANG.Sq2 str. ANG.strain Sq2. prokMSA_id:009028 AF022403 Shewanella ANG.309 str. ANG.strain 309. prokMSA_id:009030 AF026460 Shewanella SQ10. prokMSA_id:009031 AF026461 Shewanella SQ26. prokMSA_id:009023 AF170794 ATCC 33888. prokMSA_id:040030 AF249336 Shewanella sp. GIT-33 prokMSA_id:074855 AF249338 Shewanella sp. GIT-1 prokMSA_id:047457 AF277549 Shewanella McMurdo.10 prokMSA_id:018498 AF420312 Shewanella fidelia strain KMM3582T prokMSA_id:047896 AF420313 Shewanella fidelia strain KMM3589 prokMSA_id:032772 AF424160 Shewanella sp. MERTZ_0CM_409 prokMSA_id:088004 AF500079 Shewanella japonica isolate KMM 3582 prokMSA_id:087485 AF500080 Shewanella colwelliana isolate KMM 3586 prokMSA_id:061126 AF530131 Shewanella colwelliana prokMSA_id:061122 AF530138 Shewanella sp. MGP-17/AN5 prokMSA_id:061112 AF530149 Shewanella gelidimarina prokMSA_id:046491 AJ271657 Shewanella sp. clone D1Mn prokMSA_id:094249 AJ551089 Shewanella sp. wp2 isolate wp2 prokMSA_id:093658 AJ551090 Shewanella sp. wp3 isolate wp3 prokMSA_id:088562 AJ567541 Shewanella sp. clone MBMPE21 prokMSA_id:089685 AJ567577 Shewanella sp. clone MBAE15 prokMSA_id:088382 AJ567580 Shewanella sp. clone MBAE19 prokMSA_id:090363 AJ567582 Shewanella sp. clone MBAE22 prokMSA_id:090403 AJ567588 Shewanella sp. clone MBAE29 prokMSA_id:090746 AJ567592 Shewanella sp. clone MBAE37 prokMSA_id:089499 AJ567593 Shewanella sp. clone MBAE39 prokMSA_id:089183 AJ567600 Shewanella sp. clone MBAE50 prokMSA_id:090286 AJ567601 Shewanella sp. clone MBAE52 prokMSA_id:089280 AJ567602 Shewanella sp. clone MBAE53 prokMSA_id:089202 AJ567612 Shewanella sp. clone MBAE71 prokMSA_id:088277 AJ567616 Shewanella sp. clone MBAE100 prokMSA_id:069757 AY170366 Shewanella waksmanii prokMSA_id:069583 AY170369 Shewanella fidelis prokMSA_id:083371 AY241431 Shewanella sp. UST020129-004 prokMSA_id:092948 AY351983 Shewanella affinis prokMSA_id:072541 D21221 Shewanella sp. strain:DB6101 prokMSA_id:009007 D21223 Vibrio sp. str. DB6906. prokMSA_id:072743 D21223 Shewanella sp. strain:DB6906 prokMSA_id:071831 D21225 Shewanella violacea prokMSA_id:009008 D21225 Shewanella violacea str. DSS12 . prokMSA_id:071566 D21229 Shewanella sp. strain:DB5501 prokMSA_id:071630 D63488 Shewanella sp. strain DB172F prokMSA_id:008998 D63488 Vibrio sp. str. DB172F. prokMSA_id:070185 D63824 Shewanella sp. strain DB172R prokMSA_id:009021 D63824 Vibrio sp. str. DB172R. prokMSA_id:009025 U85907 Shewanella gelidimarina str. ICP6 ACAM 456 . 2.28.3.20.4.047 OTU 1 seq prokMSA_id:067716 AB062166 clone:pBSB6.36 2.28.3.20.4.048 OTU 1 seq prokMSA_id:067735 AB062150 clone:pBSB2.3 2.28.3.20.4.049 OTU 1 seq prokMSA_id:067736 AB062149 clone:pBSB2.1 2.28.3.20.4.051 OTU 36 seqs prokMSA_id:008989 AB008797 Moritella DB21MT-5 str. DB21MT-5. prokMSA_id:008978 AB011353 Moritella ODA02. prokMSA_id:008979 AB011354 Moritella HAS1123. prokMSA_id:008980 AB011355 Moritella J13. prokMSA_id:008981 AB011356 Moritella J28. prokMSA_id:008982 AB011357 Moritella HAR08. prokMSA_id:008983 AB011358 Moritella HAR13. prokMSA_id:008984 AB011359 Moritella HAR65. prokMSA_id:008985 AB011360 Moritella SC20. prokMSA_id:008986 AB011361 Moritella SC22. prokMSA_id:008987 AB011362 Moritella SC25. prokMSA_id:008988 AB011363 Moritella SC27. prokMSA_id:008992 AB013840 Moritella sp. str. 9-3.G. prokMSA_id:008993 AB013841 Moritella sp. str. 9-11.F. prokMSA_id:033284 AB038033 Moritella marina prokMSA_id:067738 AB062147 clone:pBSB1.18 prokMSA_id:094578 AB120660 Moritella sp. 2D2 prokMSA_id:094726 AB120661 Moritella sp. 5710 prokMSA_id:019421 AF424061 Moritella sp. MERTZ_2CM_27 prokMSA_id:070982 AF530133 Moritella sp. MGP-6 prokMSA_id:008977 AJ132226 Moritella viscosa str. NVI 88/478T. prokMSA_id:024239 AJ252022 Moritella sp. strain 2693 prokMSA_id:072172 AJ252023 Moritella sp. strain 2674 prokMSA_id:048310 AJ297540 Moritella marina prokMSA_id:089786 AY321401 clone L7 prokMSA_id:092609 AY346334 Moritella sp. WP-02-2-25 prokMSA_id:098458 AY380781 Moritella viscosa strain 2002/09/1069-1 prokMSA_id:097807 AY382583 Moritella sp. 2-5-10-1 prokMSA_id:097062 AY382584 Moritella sp. 1-2-8-1 prokMSA_id:096373 AY382585 Moritella sp. 2-2-2-1 prokMSA_id:095451 AY394859 Moritella sp. 760 C prokMSA_id:098793 AY394860 Moritella sp. 762 G prokMSA_id:008975 D21224 Moritella japonica str. DSK1. prokMSA_id:009010 NONE Moritella marina str. MP-1 ATCC 15381 . prokMSA_id:008976 X82142 Moritella marina str. MP-1 NCIMB 1144 . prokMSA_id:008995 Y17574 Moritella viscosa str. 478/88. 2.28.3.20.4.052 OTU 1 seq prokMSA_id:079606 AB094917 clone:OHKB9.8 2.28.3.20.4.053 OTU 1 seq prokMSA_id:079882 AB094932 clone:OHKB9.79 2.28.3.20.4.054 OTU 1 seq prokMSA_id:079966 AB094837 clone:OHKB4.19 2.28.3.20.4.055 OTU 1 seq prokMSA_id:080031 AB094907 clone:OHKB7.68 2.28.3.20.4.056 OTU 1 seq prokMSA_id:080032 AB094848 clone:OHKB4.47 2.28.3.20.4.057 OTU 1 seq prokMSA_id:080118 AB094857 clone:OHKB4.78 2.28.3.20.4.058 OTU 1 seq prokMSA_id:080282 AB094928 clone:OHKB9.60 2.28.3.20.4.059 OTU 1 seq prokMSA_id:080636 AB094899 clone:OHKB7.43 2.28.3.20.4.060 OTU 1 seq prokMSA_id:080733 AB094925 clone:OHKB9.50 2.28.3.20.4.061 OTU 1 seq prokMSA_id:081014 AB094923 clone:OHKB9.40 2.28.3.20.4.062 OTU 1 seq prokMSA_id:088337 AJ567615 Shewanella sp. clone MBAE94 2.28.3.20.4.063 OTU 1 seq prokMSA_id:089252 AJ567604 Alteromonadaceae clone MBAE55 2.28.3.20.4.064 OTU 1 seq prokMSA_id:089469 AJ567583 Shewanella sp. clone MBAE24 2.28.3.20.4.065 OTU 1 seq prokMSA_id:090386 AJ567589 Shewanella sp. clone MBAE30 2.28.3.20.4.066 OTU 1 seq prokMSA_id:090686 AJ567613 Alcanivorax sp. clone MBAE72 2.28.3.20.4.067 OTU 1 seq prokMSA_id:094605 AY373405 clone A154 complete 2.28.3.20.4.068 OTU 1 seq prokMSA_id:094778 AY373425 clone A32 2.28.3.20.4.069 OTU 1 seq prokMSA_id:097600 AY375074 clone B38 2.28.3.20.4.070 OTU 1 seq prokMSA_id:098089 AB094413 Psychromonas hadaliensis strain:K41G 2.28.3.20.4.999 poor quality 36 seqs prokMSA_id:008991 AB013823 Moritella Moritella sp. str. 20.c. prokMSA_id:009033 AB013824 str. 63.g. prokMSA_id:009002 AB013837 Shewanella sp. str. 3-2.A. prokMSA_id:009003 AF005269 Shewanella ACAM519 ACAM 519. prokMSA_id:009006 AF005270 Shewanella ACAM520 ACAM 520. prokMSA_id:074173 AF022404 Shewanella sp. Egg.D10 prokMSA_id:071051 AF022405 Shewanella sp. Egg.D7 prokMSA_id:074256 AF022406 Shewanella sp. ANG.D13 prokMSA_id:033720 AF025545 Shewanella sp. MED2 prokMSA_id:037830 AF025562 Shewanella gelidimarina prokMSA_id:019555 AF038506 Shewanella sp. ANG-C37 prokMSA_id:027316 AF056465 Shewanella sp. LX5 prokMSA_id:028333 AF249337 Shewanella sp. GIT-20 prokMSA_id:016809 AF296146 DMSP-degrading marine JA27 prokMSA_id:038568 AF325555 Shewanella sp. YN-1 prokMSA_id:033808 AF441866 gamma clone CD13B9 prokMSA_id:061151 AF530104 isolate MGP DGGE Band 12A prokMSA_id:072448 AH005126 Shewanella benthica strain PT48 prokMSA_id:071038 AH005128 Shewanella benthica PT99 prokMSA_id:069110 AY170367 Shewanella sp. KMM 3587 prokMSA_id:074370 AY170368 Shewanella colwelliana prokMSA_id:070147 AY170370 Shewanella sp. KMM 3821 prokMSA_id:070174 AY170371 Shewanella sp. KMM 3922 prokMSA_id:093750 AY361947 clone P8-NTA-1 prokMSA_id:009018 D11208 Moritella marina str. MP-1 ATCC 15381 . prokMSA_id:009024 NONE Moritella marina str. MP-1 ATCC 15381 . prokMSA_id:008997 U91590 Shewanella hanedai ATCC 33224 . prokMSA_id:008999 U91592 Shewanella benthica str. F1A. prokMSA_id:009000 U91594 Shewanella benthica ATCC 43991. prokMSA_id:071295 U91597 Shewanella benthica strain PT48 prokMSA_id:074298 U91598 Shewanella benthica strain PT48 prokMSA_id:069945 U91599 Shewanella benthica PT99 prokMSA_id:072224 U91600 Shewanella benthica PT99 prokMSA_id:009011 X82131 Shewanella benthica ATCC 43992 . prokMSA_id:009015 Z77417 str. 1-420 C5. prokMSA_id:040495 Z77571 1-140 C45 2.28.3.20.5 SHE.PUTREFACIENS_SUBGROUP 247 seqs 2.28.3.20.5.004 OTU 1 seq prokMSA_id:009107 U91554 Shewanella putrefaciens str. 189 tr. 2.28.3.20.5.014 OTU 15 seqs prokMSA_id:009112 AF005249 Shewanella algae ATCC 51192 . prokMSA_id:028400 AF005250 Shewanella alga prokMSA_id:009067 AF006669 Shewanella alga ACM 4733. prokMSA_id:046882 AF319767 Shewanella sp. A6.mk prokMSA_id:068781 AF490372 gamma clone AKB13 prokMSA_id:071500 AF513471 Alteromonadaceae PH39 prokMSA_id:091697 AY345458 K75 prokMSA_id:091498 AY345471 K46 prokMSA_id:009063 U91544 Shewanella alga str. 14.80-A. prokMSA_id:009064 U91545 Shewanella alga str. 43940. prokMSA_id:009042 U91546 Shewanella algae str. OK-1 IAM 14159 . prokMSA_id:009065 U91547 Shewanella alga str. T# 8. prokMSA_id:009066 U91548 Shewanella alga str. 68872. prokMSA_id:072739 X81621 S.alga Bry prokMSA_id:009062 X81622 Shewanella algae str. FeRed. 2.28.3.20.5.015 OTU 1 seq prokMSA_id:009061 AF039056 Shewanella oneidensis str. SP-32. 2.28.3.20.5.016 OTU 2 seqs prokMSA_id:024664 AF039054 Shewanella oneidensis strain SP-7 prokMSA_id:009060 AF039055 Shewanella oneidensis str. SP-22. 2.28.3.20.5.019 OTU 3 seqs prokMSA_id:009054 AB015521 str. BD1-9. prokMSA_id:009055 AB015561 str. BD4-11. prokMSA_id:009056 AB015572 str. BD6-1. 2.28.3.20.5.022 OTU 1 seq prokMSA_id:009051 AF146235 Shewanella CLEAR-11. 2.28.3.20.5.023 OTU 1 seq prokMSA_id:009049 AF142921 clone PENDANT-8. 2.28.3.20.5.028 OTU 1 seq prokMSA_id:019933 AJ288153 Shewanella sp. isolate SK-3-30-1 2.28.3.20.5.029 OTU 1 seq prokMSA_id:021617 AF195476 Shewanella kps77f 2.28.3.20.5.030 OTU 3 seqs prokMSA_id:022077 AF195475 Shewanella kps63 prokMSA_id:086253 AF539787 Alteromonadaceae E1 prokMSA_id:084722 AF539788 Alteromonadaceae RE1-1 2.28.3.20.5.032 OTU 91 seqs prokMSA_id:009048 AB003190 Shewanella sp. str. SC2A. prokMSA_id:047655 AB039737 Shewanella sp. SIB1 prokMSA_id:033048 AB039738 Shewanella sp. SIC1 prokMSA_id:029356 AB039739 Shewanella sp. SIS1 prokMSA_id:070808 AB057660 Shewanella putrefaciens prokMSA_id:093758 AB111109 Shewanella sp. WW001 prokMSA_id:057784 AE015455 Shewanella oneidensis MR-1 section 4 of 457 of the complete genome prokMSA_id:057781 AE015470 Shewanella oneidensis MR-1 section 19 of 457 of the complete genome prokMSA_id:057780 AE015475 Shewanella oneidensis MR-1 section 24 of 457 of the complete genome prokMSA_id:055466 AE015723 Shewanella oneidensis MR-1 section 272 of 457 of the complete genome prokMSA_id:057778 AE015794 Shewanella oneidensis MR-1 section 343 of 457 of the complete genome prokMSA_id:057779 AE015853 Shewanella oneidensis MR-1 section 402 of 457 of the complete genome prokMSA_id:057777 AE015881 Shewanella oneidensis MR-1 section 430 of 457 of the complete genome prokMSA_id:057774 AE015882 Shewanella oneidensis MR-1 section 431 of 457 of the complete genome prokMSA_id:057775 AE015906 Shewanella oneidensis MR-1 section 455 of 457 of the complete genome prokMSA_id:009113 AF005251 Shewanella oneidensis str. MR-1. prokMSA_id:009072 AF005252 Shewanella MR-4 str. MR-4. prokMSA_id:009073 AF005253 Shewanella MR-7 str. MR-7. prokMSA_id:009074 AF005254 Shewanella MR-8 str. MR-8. prokMSA_id:009108 AF005255 Shewanella putrefaciens str. MR-30. prokMSA_id:009102 AF006670 Shewanella putrefaciens ACAM 574. prokMSA_id:009050 AF061557 Shewanella Ac10 str. Ac10. prokMSA_id:017362 AF132872 Shewanella frigidimarina strain ACAM 573 prokMSA_id:037061 AF132873 Shewanella frigidimarina strain ACAM 516 prokMSA_id:018864 AF132876 Shewanella frigidimarina strain ACAM 554 prokMSA_id:037466 AF132879 Shewanella frigidimarina strain ACAM 555 prokMSA_id:034623 AF132881 Shewanella frigidimarina strain ACAM 565 prokMSA_id:040566 AF132882 Shewanella frigidimarina strain ACAM 571 prokMSA_id:009099 AF136269 Shewanella putrefaciens str. CN-32 SMCC 576W. prokMSA_id:009058 AF136392 Shewanella arsenana str. arsenana. prokMSA_id:009111 AF140016 Shewanella ML-S2 str. ML-S2. prokMSA_id:009110 AF140017 Shewanella ML-S3 str. ML-S3. prokMSA_id:070300 AF170300 Shewanella putrefaciens IR-1 complete prokMSA_id:040333 AF277467 Shewanella SIC.114 prokMSA_id:023282 AF277531 Shewanella SIC.10368 prokMSA_id:018527 AF321041 Shewanella baltica prokMSA_id:032956 AF387346 Shewanella sp. CL256/73 prokMSA_id:033931 AF387347 Shewanella oneidensis prokMSA_id:037367 AF387349 Shewanella sp. 184 prokMSA_id:051097 AF387350 W3 18-1 prokMSA_id:045381 AF447151 clone TDC-S3:10 prokMSA_id:080288 AF468231 clone ARKCH2Br2-49 prokMSA_id:080135 AF468258 clone ARKDMS-30 prokMSA_id:079977 AF468269 clone ARKCH4-100 prokMSA_id:079809 AF468282 clone ARKIA-102 prokMSA_id:080015 AF468283 clone ARKIA-124 prokMSA_id:080569 AF468298 clone ARKIA-82 prokMSA_id:080425 AF468387 Arctic sea ice ARK10035 prokMSA_id:073334 AF513424 Shewanella sp. 12-1-2 prokMSA_id:073681 AF513425 Shewanella sp. 14-1 prokMSA_id:075631 AF550588 Shewanella sp. Ko702 prokMSA_id:075869 AF550589 Shewanella sp. Ko704 prokMSA_id:009100 AJ000213 Shewanella putrefaciens. prokMSA_id:009068 AJ000214 Shewanella baltica NCTC 10735 . prokMSA_id:009075 AJ000215 Shewanella baltica str. OS155. prokMSA_id:009076 AJ000216 Shewanella baltica str. OS195. prokMSA_id:009079 AJ006084 Shewanella massilia. prokMSA_id:022553 AJ288152 Shewanella sp. isolate Bok-1-30-2 prokMSA_id:035898 AJ295714 Polar sea R7216 prokMSA_id:025015 AJ296566 GR-WP33-34 clone GR-WP33-34 prokMSA_id:016931 AJ300833 Shewanella frigidimarina strain LMG19867 prokMSA_id:074152 AJ300834 Shewanella livingstonis strain LMG19866T prokMSA_id:086623 AJ440976 Antarctic R-12605 strain R-12605 prokMSA_id:064273 AJ491715 Shewanella putrefaciens strain P12 prokMSA_id:063990 AJ491823 Shewanella putrefaciens strain B1 prokMSA_id:063989 AJ491825 Shewanella putrefaciens strain B3 prokMSA_id:087848 AJ563805 Shewanella livingstonensis strain GA-22 prokMSA_id:059193 AY136079 Shewanella putrefaciens prokMSA_id:078611 AY159789 Shewanella frigidimarina isolate B01 prokMSA_id:078731 AY159794 Shewanella frigidimarina isolate B28 prokMSA_id:078664 AY159798 Shewanella baltica prokMSA_id:081492 AY167276 Shewanella sp. ANT9071 prokMSA_id:089905 AY321590 Shewanella putrefaciens prokMSA_id:009041 U39398 Shewanella sp. ACAM 122. prokMSA_id:009044 U85902 Shewanella frigidimarina str. A173 ACAM 584. prokMSA_id:009043 U85903 Shewanella frigidimarina str. ICP1 ACAM 591 . prokMSA_id:009045 U85904 Shewanella frigidimarina str. IC012 ACAM 593. prokMSA_id:009046 U85905 Shewanella frigidimarina str. ICP4 ACAM 588. prokMSA_id:009047 U85906 Shewanella frigidimarina str. IC010 ACAM 600. prokMSA_id:009069 U91549 Shewanella putrefaciens str. A6. prokMSA_id:009098 U91550 Shewanella putrefaciens str. A31. prokMSA_id:009106 U91551 Shewanella putrefaciens NCIMB 12577. prokMSA_id:009070 U91552 Shewanella putrefaciens str. F137. prokMSA_id:009071 U91553 Shewanella putrefaciens NCTC 10695. prokMSA_id:009081 U91593 Shewanella putrefaciens ATCC 8072. prokMSA_id:009097 X81621 Shewanella algae str. BrY. prokMSA_id:009094 X81623 Shewanella putrefaciens LMG 2268 . prokMSA_id:070682 X81623 S.putrefaciens prokMSA_id:009057 X82133 Shewanella putrefaciens str. B.W. Hammer 95 ATCC 8071 . prokMSA_id:009105 X95233 clone Aspo5. prokMSA_id:009053 Y13699 Shewanella frigidimarina NCIMB 400. 2.28.3.20.5.033 OTU 1 seq prokMSA_id:032594 AF132877 Shewanella frigidimarina strain ACAM 556 2.28.3.20.5.035 OTU 8 seqs prokMSA_id:037718 AB038028 Vibrio sp. OS53 prokMSA_id:009077 AF145921 Shewanella KMM3299 KMM 3299. prokMSA_id:054246 AF173966 Shewanella baltica prokMSA_id:087528 AF500075 Shewanella japonica isolate KMM 3597 prokMSA_id:087894 AF500076 Shewanella japonica isolate KMM 3590 prokMSA_id:087995 AF500078 Shewanella japonica isolate KMM 3577 prokMSA_id:084447 AF539784 Alteromonadaceae R2 prokMSA_id:094282 AY366086 Shewanella pacifica strain KMM 3605 2.28.3.20.5.036 OTU 1 seq prokMSA_id:038945 AF132878 Shewanella frigidimarina strain ACAM 557 2.28.3.20.5.037 OTU 1 seq prokMSA_id:041357 AF422587 clone t012 2.28.3.20.5.038 OTU 1 seq prokMSA_id:069455 AF513428 Pseudomonas sp. 40-3 2.28.3.20.5.039 OTU 1 seq prokMSA_id:044799 AF277530 Shewanella SIC.10363 2.28.3.20.5.040 OTU 1 seq prokMSA_id:046569 AF277532 gamma SIC.10369 2.28.3.20.5.041 OTU 1 seq prokMSA_id:047581 AF387348 PV-4 2.28.3.20.5.042 OTU 1 seq prokMSA_id:048855 AF465627 Gamma AKB07 2.28.3.20.5.043 OTU 1 seq prokMSA_id:050125 AF132870 Shewanella frigidimarina strain ACAM 562 2.28.3.20.5.044 OTU 1 seq prokMSA_id:052642 AF295592 Shewanella sp. ACEM-9 2.28.3.20.5.045 OTU 3 seqs prokMSA_id:085371 AF539785 Alteromonadaceae RE2-10 prokMSA_id:067415 AJ457092 Shewanella denitrificans strain OS226 prokMSA_id:067414 AJ457093 Shewanella denitrificans strain OS220 2.28.3.20.5.046 OTU 1 seq prokMSA_id:072648 AJ240911 gamma CHAB-I-7 5' 2.28.3.20.5.047 OTU 1 seq prokMSA_id:072734 AF513427 Shewanella sp. 31-4 2.28.3.20.5.048 OTU 1 seq prokMSA_id:072971 AF513426 Shewanella sp. 22-1 2.28.3.20.5.049 OTU 1 seq prokMSA_id:078510 AY159791 Shewanella sp. B07 2.28.3.20.5.050 OTU 1 seq prokMSA_id:078552 AY159793 Shewanella frigidimarina isolate B25 2.28.3.20.5.051 OTU 1 seq prokMSA_id:078923 AY159790 Alteromonadaceae B04 2.28.3.20.5.052 OTU 1 seq prokMSA_id:079789 AB094927 clone:OHKB9.57 2.28.3.20.5.053 OTU 1 seq prokMSA_id:079941 AY190533 Shewanella gaetbuli 2.28.3.20.5.054 OTU 1 seq prokMSA_id:084951 AF539786 Alteromonadaceae R8 2.28.3.20.5.055 OTU 1 seq prokMSA_id:085626 AY241408 Shewanella sp. UST010723-014 2.28.3.20.5.056 OTU 2 seqs prokMSA_id:087342 AJ563424 Shewanella sp. D14-2-1 isolate D14-2-1 prokMSA_id:087329 AJ563425 Shewanella sp. D5-2-2 isolate D5-2-2 2.28.3.20.5.057 OTU 1 seq prokMSA_id:087855 AJ564063 Shewanella sp. S12 2.28.3.20.5.058 OTU 1 seq prokMSA_id:087880 AJ564057 Shewanella sp. B30-3-2 2.28.3.20.5.059 OTU 1 seq prokMSA_id:089485 AY326275 Shewanella sp. LT17 2.28.3.20.5.060 OTU 1 seq prokMSA_id:090018 AY321411 clone M63 2.28.3.20.5.061 OTU 1 seq prokMSA_id:091958 AY345383 JB16 2.28.3.20.5.062 OTU 1 seq prokMSA_id:097438 AY211669 Chloroflexi clone GoM GC234 029E 2.28.3.20.5.063 OTU 1 seq prokMSA_id:097572 AY398666 Shewanella sp. G5 2.28.3.20.5.999 poor quality 87 seqs prokMSA_id:052170 AB064499 Shewanella sp. AER No. 203 prokMSA_id:045819 AB064500 Shewanella sp. AER No. 32 prokMSA_id:009104 AF005248 Shewanella amazonensis str. SB2B. prokMSA_id:009078 AF006671 Shewanella putrefaciens ACAM 576. prokMSA_id:009101 AF006672 Shewanella putrefaciens ACAM 577. prokMSA_id:046389 AF025571 Shewanella frigidimarina strain ANT1 prokMSA_id:021224 AF025572 Shewanella frigidimarina strain ANT2 prokMSA_id:021338 AF025575 Shewanella frigidimarina strain ANT5 prokMSA_id:009103 AF033028 Shewanella saccharophilus str. GC-29. prokMSA_id:028656 AF132869 Shewanella baltica prokMSA_id:020504 AF132871 Shewanella frigidimarina strain ACAM 552 prokMSA_id:019872 AF132875 Shewanella frigidimarina strain ACAM 533 prokMSA_id:037241 AF132880 Shewanella frigidimarina strain ACAM 563 prokMSA_id:042152 AF283859 Arctic sea ice AWS-11B5 prokMSA_id:040751 AF332281 clone C12-26 prokMSA_id:031110 AF357184 Shewanella sp. C746 prokMSA_id:035369 AF357190 Gamma C936 prokMSA_id:042653 AF357191 Shewanella sp. C714 prokMSA_id:050292 AF428750 clone CR98-5-20 prokMSA_id:019844 AF428960 clone CR99-35-02 prokMSA_id:050034 AF432318 gamma 0%N-26d-1 prokMSA_id:036921 AF447136 clone TDC-S1:24 prokMSA_id:039264 AF447141 clone TDC-S3:20 prokMSA_id:045674 AF451259 Shewanella sp. A70 prokMSA_id:043335 AF465626 Gamma AKB06 prokMSA_id:049552 AF465827 Gamma AKB08 prokMSA_id:019562 AF465828 Gamma AKB09 prokMSA_id:068778 AF490369 gamma clone AKB10 prokMSA_id:073326 AF499409 clone BL-107 prokMSA_id:086890 AF500077 Shewanella japonica isolate KMM 3588 prokMSA_id:072251 AF513423 Shewanella sp. 4-1 prokMSA_id:061817 AF529345 gamma clone CLi98 prokMSA_id:073155 AF542201 Gamma 1A prokMSA_id:009083 AJ001277 Shewanella baltica str. OS182. prokMSA_id:009093 AJ001278 Shewanella baltica str. OS669. prokMSA_id:009088 AJ001279 Shewanella baltica str. OS257. prokMSA_id:009090 AJ001280 Shewanella baltica str. OS278. prokMSA_id:009082 AJ001281 Shewanella baltica str. OS106. prokMSA_id:009092 AJ001282 Shewanella baltica str. OS295. prokMSA_id:009087 AJ001283 Shewanella baltica str. OS208. prokMSA_id:009084 AJ001284 Shewanella baltica str. OS183. prokMSA_id:009086 AJ001285 Shewanella baltica str. OS197. prokMSA_id:009089 AJ001286 Shewanella baltica str. OS268. prokMSA_id:009085 AJ001287 Shewanella baltica str. OS189. prokMSA_id:009091 AJ001288 Shewanella baltica str. OS284. prokMSA_id:027166 AJ301575 Shewanella baltica clone GR-WP39-25 prokMSA_id:073231 AJ311964 gamma strain OS-217 prokMSA_id:025208 AJ344465 Shewanella frigidimarina strain OI-4-1 prokMSA_id:028172 AJ344466 Shewanella frigidimarina strain OI-3-2 prokMSA_id:032331 AJ344467 Shewanella frigidimarina strain OI-3-4 prokMSA_id:039538 AJ344468 Shewanella frigidimarina strain OI-11-2 prokMSA_id:029192 AJ344469 Shewanella frigidimarina strain OI-16-1 prokMSA_id:036207 AJ344470 Shewanella frigidimarina strain OI-17-2 prokMSA_id:036359 AJ344471 Shewanella frigidimarina strain OI-20-2 prokMSA_id:022888 AJ344472 Shewanella frigidimarina strain SI-10-4 prokMSA_id:031116 AJ391179 marine gamma AS-16 prokMSA_id:086879 AJ561130 gamma clone ANT-RB 55 prokMSA_id:087854 AJ561158 gamma clone RB_OIL 213 prokMSA_id:087722 AJ561173 gamma clone RB_OIL 78 prokMSA_id:087787 AJ561187 Gamma GA-22 isolate GA-22 prokMSA_id:086857 AJ564060 Shewanella sp. B35-4-1 prokMSA_id:051565 AY028968 gamma prokMSA_id:022288 AY050528 Shewanella sp. SIGA172a prokMSA_id:055707 AY083465 Gamma AKB15 prokMSA_id:066130 AY100676 Shewanella frigidimarina prokMSA_id:074990 AY158029 Shewanella frigidimarina strain EQ2 prokMSA_id:076552 AY158031 Shewanella frigidimarina strain LaSQ8 prokMSA_id:076379 AY158032 Shewanella baltica strain LaQ7 prokMSA_id:075231 AY158034 Shewanella baltica strain CSQ1 prokMSA_id:076772 AY158039 Marine CSQ2 prokMSA_id:078539 AY159799 Shewanella sp. B48 prokMSA_id:086161 AY271864 clone BSW 45 prokMSA_id:095035 AY321536 Marine 13723 prokMSA_id:094229 AY361948 clone P8-NTA-2 prokMSA_id:093349 AY361950 clone P8-NTA-4 prokMSA_id:093443 AY361952 clone P8-CIT-3 prokMSA_id:009114 D11190 Shewanella putrefaciens str. B.W. Hammer 95 IAM 12079 . prokMSA_id:027585 U63945 Aeromonas sp. prokMSA_id:054032 U63948 Shewanella sp. prokMSA_id:009109 U65968 Shewanella putrefaciens str. ST9625. prokMSA_id:009052 U91591 Shewanella SC2A str. SC2A. prokMSA_id:009080 X99119 str. SELECT-3. prokMSA_id:009040 Z69313 str. s9. prokMSA_id:009096 Z69314 str. s10. prokMSA_id:009039 Z69333 str. s29. prokMSA_id:009059 Z77441 str. 1-700 C13. prokMSA_id:009095 Z77482 str. 2-100 C1.19. 2.28.3.21 PSM.ANTARC_GROUP 48 seqs 2.28.3.21.001 OTU 1 seq prokMSA_id:009122 U91588 str. CNPT3. 2.28.3.21.008 OTU 1 seq prokMSA_id:023426 AB059266 Psychromonas sp. NTW-2 2.28.3.21.011 OTU 24 seqs prokMSA_id:047163 AB038034 Marine psychrotrophic MK242 prokMSA_id:021481 AB052160 Psychromonas kaikoae strain:JT7304 prokMSA_id:071948 AF235108 Alteromonas sp. KT1114 prokMSA_id:073561 AF235109 Alteromonas sp. KT1116 prokMSA_id:072165 AF235123 Alteromonas sp. KT1102 prokMSA_id:038440 AF277552 Psychromonas McMurdo.211 prokMSA_id:038990 AF374385 Psychromonas arctica complete prokMSA_id:039185 AF419349 Psychromonas sp. Ant5-5 prokMSA_id:024214 AF424154 Psychromonas sp. MERTZ_21CM_57 prokMSA_id:080094 AF468249 clone ARKDMS-45 prokMSA_id:079713 AF468290 clone ARKIA-79 prokMSA_id:061119 AF530142 Psychromonas sp. MGP-29/AN1 prokMSA_id:073094 AJ308372 Marine psychrotrophic Mst37 strain Mst37 prokMSA_id:032735 AJ400705 Marine Mst85 strain Mst85 prokMSA_id:025724 AJ416756 Psychromonas profunda prokMSA_id:075725 AJ519626 gamma clone Sh765B-TzT-13 prokMSA_id:076528 AJ519627 gamma clone Sh765B-TzT-48 prokMSA_id:075659 AJ519629 gamma clone Sh765B-TzT-54 prokMSA_id:081267 AY167306 Psychromonas sp. ANT9248 prokMSA_id:081844 AY167312 Psychromonas sp. ANT9282a prokMSA_id:009115 U14582 str. 90-Pgv1. prokMSA_id:009120 U73722 str. 174. prokMSA_id:009117 U85849 Psychromonas IC004 str. IC004. prokMSA_id:009121 Y14697 Psychromonas antarctica str. star-1 DSM 10704. 2.28.3.21.012 OTU 2 seqs prokMSA_id:067742 AB062144 clone:pBSB1.1 prokMSA_id:058514 AB072713 clone:pHAuB-24 2.28.3.21.013 OTU 1 seq prokMSA_id:067733 AB062152 clone:pBSB2.31 2.28.3.21.014 OTU 6 seqs prokMSA_id:077950 AY172240 clone 237 prokMSA_id:077993 AY172251 clone 2128 prokMSA_id:077868 AY172264 clone 2171 prokMSA_id:077670 AY172266 clone 2177 prokMSA_id:077944 AY172269 clone 2122 prokMSA_id:077798 AY172301 clone 237 2.28.3.21.015 OTU 1 seq prokMSA_id:079898 AB094931 clone:OHKB9.74 2.28.3.21.016 OTU 1 seq prokMSA_id:080397 AB094924 clone:OHKB9.42 2.28.3.21.017 OTU 1 seq prokMSA_id:080501 AB094919 clone:OHKB9.19 2.28.3.21.018 OTU 1 seq prokMSA_id:080753 AB094933 clone:OHKB9.85 2.28.3.21.019 OTU 1 seq prokMSA_id:081340 AY167326 Psychromonas sp. ANT9265 2.28.3.21.999 poor quality 8 seqs prokMSA_id:009118 AB023378 Psychromonas 4-22 str. 4-22. prokMSA_id:037323 AF132857 Psychromonas sp. NTB5La prokMSA_id:070109 AF513422 Psychromonas sp. 39-3 prokMSA_id:061161 AF530097 isolate MGP DGGE Band 7 prokMSA_id:084923 AY271860 clone BSW 14 prokMSA_id:009119 U73721 str. 37. prokMSA_id:009116 U85848 str. IC052. prokMSA_id:035468 U85850 Psychromonas sp. IC047 2.28.3.22 FRM.BALEARICA_GROUP 9 seqs 2.28.3.22.001 OTU 2 seqs prokMSA_id:075149 AY158002 Ferrimonas balearica prokMSA_id:009123 X93021 Ferrimonas balearica str. PAT DSM 9799 . 2.28.3.22.002 OTU 1 seq prokMSA_id:084401 AY205304 Gamma YSK-2002 2.28.3.22.003 OTU 1 seq prokMSA_id:089632 AF432632 clone N11.38WL 2.28.3.22.004 OTU 1 seq prokMSA_id:093929 AJ582058 clone KCM-C-6 2.28.3.22.999 poor quality 4 seqs prokMSA_id:068090 AF365652 clone BM89DS6BA2 prokMSA_id:068072 AF365674 clone BM89DS6BD12 prokMSA_id:009124 Z77451 str. 1-700 C26. prokMSA_id:009125 Z77506 str. 2-100 C5. 2.28.3.23 VIBRIO_GROUP 885 seqs 2.28.3.23.1 PHOTOBACTERIUM_SUBGROUP 120 seqs 2.28.3.23.1.1 V.HOLLISAE_SUBGROUP 17 seqs 2.28.3.23.1.1.001 OTU 1 seq prokMSA_id:009131 Z19106 symbiont of Cryptosaras couesi. 2.28.3.23.1.1.002 OTU 2 seqs prokMSA_id:045389 AB038027 Vibrio sp. SG128 prokMSA_id:009130 AF118021 Vibrio RE35F/12 str. RE35F/12. 2.28.3.23.1.1.003 OTU 1 seq prokMSA_id:009129 Z19105 symbiont of Melanocetus johnsoni. 2.28.3.23.1.1.004 OTU 1 seq prokMSA_id:009126 X74707 Vibrio hollisae CIP 101886 . 2.28.3.23.1.1.005 OTU 4 seqs prokMSA_id:018223 AB038023 Vibrio sp. EN276 prokMSA_id:073788 AJ316207 Vibrio sp. LMG 19840 strain LMG 19840 prokMSA_id:070596 AJ316208 Vibrio sp. LMG 19839 strain LMG 19839 prokMSA_id:074321 AJ437193 Enterovibrio norvegicus strain LMG 19842 2.28.3.23.1.1.006 OTU 1 seq prokMSA_id:059148 AY136119 Vibrio sp. MED103 2.28.3.23.1.1.007 OTU 1 seq prokMSA_id:069494 AB049741 Idiomarina sp. Loihi-Chm-1 2.28.3.23.1.1.008 OTU 1 seq prokMSA_id:083097 AY241437 Vibrio sp. UST020129-038 2.28.3.23.1.1.009 OTU 1 seq prokMSA_id:085377 AY241419 Vibrio sp. UST020129-040 2.28.3.23.1.1.010 OTU 1 seq prokMSA_id:085817 AY241436 Vibrio sp. UST020129-037 2.28.3.23.1.1.999 poor quality 3 seqs prokMSA_id:031659 AB022335 obligately oligotrophic POI-42 prokMSA_id:009127 D11206 Vibrio hollisae JCM 1283 . prokMSA_id:009128 X56583 Vibrio hollisae ATCC 33564 . 2.28.3.23.1.2 SAV.COSTICOLA_SUBGROUP 19 seqs 2.28.3.23.1.2.001 OTU 2 seqs prokMSA_id:009142 AF057016 Salinivibrio vallismortis DSM 8285. prokMSA_id:060373 AF513466 Vibrionaceae PH25 2.28.3.23.1.2.003 OTU 1 seq prokMSA_id:021048 AB041292 ECS22 2.28.3.23.1.2.004 OTU 1 seq prokMSA_id:064131 AF477894 'A6-UMH 8% pond' 2.28.3.23.1.2.006 OTU 10 seqs prokMSA_id:060390 AF513449 Vibrionaceae LA18t prokMSA_id:091173 AY344372 clone K2-30-15 prokMSA_id:091621 AY345451 KA23 prokMSA_id:094999 AY372114 Ph2_Loihi prokMSA_id:009134 X74699 Salinivibrio costicola NCIMB 701 . prokMSA_id:009136 X95527 Salinivibrio costicola NCIMB 701 . prokMSA_id:009139 X95529 Salinivibrio costicola subsp. pathovar str. E-367. prokMSA_id:009141 X95530 Salinivibrio costicola subsp. pathovar str. V-15. prokMSA_id:009138 X95531 Salinivibrio costicola subsp. pathovar str. cepa 6. prokMSA_id:009140 X95532 Salinivibrio costicola subsp. pathovar str. H-178. 2.28.3.23.1.2.007 OTU 1 seq prokMSA_id:092709 AY353700 isolate Ph23 2.28.3.23.1.2.999 poor quality 4 seqs prokMSA_id:009135 D11200 Salinivibrio costicola NCIMB 701 . prokMSA_id:009133 M98446 Vibrio aspartigenicus str. GSP-1 ATCC 49962. prokMSA_id:009132 M98446 Vibrio aspartigenicus str. GSP-1 ATCC 49962. prokMSA_id:009137 X95528 Salinivibrio costicola subsp. pathovar str. AV3. 2.28.3.23.1.3 PHB.DAMSELA_SUBGROUP 24 seqs 2.28.3.23.1.3.001 OTU 19 seqs prokMSA_id:009148 AB026844 Photobacterium damselae subsp. piscicida str. KP9038. prokMSA_id:041265 AB032014 Photobacterium histaminum prokMSA_id:020588 AB032015 Photobacterium damselae subsp. damselae prokMSA_id:098163 AY147856 Photobacterium damselae subsp. piscicida strain CVD1 prokMSA_id:096255 AY147857 Photobacterium damselae subsp. piscicida strain CVD3 prokMSA_id:095505 AY147858 Photobacterium damselae subsp. piscicida strain K12 prokMSA_id:097821 AY147859 Photobacterium damselae subsp. piscicida strain I736 prokMSA_id:098324 AY147860 Photobacterium damselae subsp. piscicida strain PN510 prokMSA_id:097403 AY147861 Photobacterium damselae subsp. damselae strain CCRC15428 prokMSA_id:079683 AY191122 Photobacterium damselae subsp. piscicida strain ATCC 17911 prokMSA_id:080852 AY191123 Photobacterium damselae subsp. piscicida strain M28561 prokMSA_id:080509 AY191124 Photobacterium damselae subsp. piscicida strain H prokMSA_id:080601 AY191125 Photobacterium damselae subsp. damselae strain ATCC 35083 prokMSA_id:079802 AY191126 Photobacterium damselae subsp. damselae strain ATCC 33539 prokMSA_id:009149 D25308 Photobacterium histaminum str. C-8. prokMSA_id:009147 X74700 Photobacterium damsela subsp. damsela CIP 102761. prokMSA_id:009143 X78105 Photobacterium damsela subsp. piscicida NCIMB 2058 . prokMSA_id:009144 X78106 Photobacterium damsela str. wild isolate. prokMSA_id:009145 Y18496 Photobacterium damselae subsp. Piscicida str. Kre4. 2.28.3.23.1.3.002 OTU 1 seq prokMSA_id:078247 AY172244 clone 2123 2.28.3.23.1.3.999 poor quality 4 seqs prokMSA_id:025874 AB062552 Photobacterium damselae strain:No.14 prokMSA_id:023893 AF441962 gamma clone CD12B6 prokMSA_id:009146 D11179 Photobacterium damsela subsp. damsela ATCC 33539 . prokMSA_id:009150 X71834 Vibrio ordalii str. MSC 2-75. 2.28.3.23.1.4 PHB.LEIOGNATHI_SUBGROUP 7 seqs 2.28.3.23.1.4.001 OTU 3 seqs prokMSA_id:083564 AB095447 Photobacterium sp. YS27-3 prokMSA_id:009154 D25309 Photobacterium leiognathi str. L1 ATCC 25521 . prokMSA_id:009151 X74686 Photobacterium leiognathi str. L1 CIP 66.5. 2.28.3.23.1.4.002 OTU 1 seq prokMSA_id:025627 AF465369 Photobacterium sp. UST991130-012 2.28.3.23.1.4.999 poor quality 3 seqs prokMSA_id:038240 AF465393 Photobacterium sp. UST991130-005 prokMSA_id:009153 D11184 Photobacterium leiognathi str. L1 ATCC 25521 . prokMSA_id:009152 Z21730 Photobacterium leiognathi str. PL721. 2.28.3.23.1.5 PHB.ANGUSTUM_SUBGROUP 12 seqs 2.28.3.23.1.5.001 OTU 6 seqs prokMSA_id:022086 AB016271 Vibrio sp. strain NIBH P2K5 complete prokMSA_id:038706 AB038031 Photobacterium sp. HAR23 prokMSA_id:018104 AB055784 Photobacterium sp. Asur-1 prokMSA_id:073668 AB055790 Photobacterium sp. Adeep-1 prokMSA_id:067191 AF497998 Photobacterium sp. D151 small subunit prokMSA_id:009157 D25307 Photobacterium angustum ATCC 25915 . 2.28.3.23.1.5.999 poor quality 6 seqs prokMSA_id:032691 AF255623 Photobacterium sp. SKA34 prokMSA_id:046195 AF366024 Marine gamma SWAT4 prokMSA_id:031412 AF366025 Marine gamma SWFL1 prokMSA_id:009156 D11183 Photobacterium angustum. prokMSA_id:009158 L35467 clone SAR 134. prokMSA_id:009155 X74685 Photobacterium angustum CIP 75.10 . 2.28.3.23.1.6 PHB.PROFUNDUM_SUBGROUP 20 seqs 2.28.3.23.1.6.003 OTU 10 seqs prokMSA_id:009160 AB003191 Photobacterium profundum str. SS9. prokMSA_id:009161 AB016982 str. MBIC3157. prokMSA_id:071373 AB055793 Hyphomicrobium sp. Ddeep-1 prokMSA_id:039967 AF235127 Photobacterium sp. KT0248 prokMSA_id:029652 AF424088 Photobacterium sp. MERTZ_2CM_125 prokMSA_id:061121 AF530139 Photobacterium profundum prokMSA_id:094122 AJ551094 Hyphomicrobium sp. wp13 isolate wp13 prokMSA_id:009159 D21226 Photobacterium profundum str. DSJ4. prokMSA_id:072659 D21226 Photobacterium sp. 16 prokMSA_id:009162 U91586 Photobacterium profundum str. SS9. 2.28.3.23.1.6.004 OTU 1 seq prokMSA_id:036478 AB059261 Photobacterium sp. PS11-6 2.28.3.23.1.6.005 OTU 1 seq prokMSA_id:042976 AF224852 clone Car123rc 2.28.3.23.1.6.006 OTU 1 seq prokMSA_id:080668 AB094892 clone:OHKB7.27 2.28.3.23.1.6.007 OTU 1 seq prokMSA_id:096297 AY211748 gamma clone GoM GC234 071S5 2.28.3.23.1.6.008 OTU 1 seq prokMSA_id:098860 AY375120 clone F37 2.28.3.23.1.6.999 poor quality 5 seqs prokMSA_id:055296 AF530106 isolate MGP DGGE Band 12C prokMSA_id:070794 AJ318948 Photobacterium sp. MYS1-06 strain MYS1-06 prokMSA_id:070732 AJ414137 Photobacterium sp. MYS1-06 strain MYS1-06 prokMSA_id:064910 AY095869 Vibrionaceae pT-211 prokMSA_id:093472 AY277268 Gamma H2 2.28.3.23.1.7 PHB.PHOSPHOREUM_SUBGROUP 21 seqs 2.28.3.23.1.7.001 OTU 13 seqs prokMSA_id:009163 AB000278 Photobacterium iliopiscarium str. PS1 ATCC 51760 . prokMSA_id:020048 AB038032 Photobacterium sp. HAR72 prokMSA_id:083679 AB095446 Photobacterium phosphoreum prokMSA_id:083761 AY241423 Photobacterium sp. UST020129-014 prokMSA_id:092082 AY345889 Photobacterium phosphoreum isolate AK1 prokMSA_id:092049 AY345890 Photobacterium phosphoreum isolate AK5 prokMSA_id:092256 AY345891 Photobacterium phosphoreum isolate AK6 prokMSA_id:092198 AY345892 Photobacterium phosphoreum isolate AK7 prokMSA_id:092792 AY345893 Photobacterium phosphoreum isolate AK8 prokMSA_id:092481 AY345894 Photobacterium phosphoreum isolate AK9 prokMSA_id:009168 D25310 Photobacterium phosphoreum ATCC 11040 . prokMSA_id:009167 X74687 Photobacterium phosphoreum ATCC 11040 . prokMSA_id:009165 Z19107 Photobacterium phosphoreum str. Og61. 2.28.3.23.1.7.002 OTU 2 seqs prokMSA_id:077755 AY172250 clone 24 prokMSA_id:078214 AY172271 clone 215 2.28.3.23.1.7.003 OTU 1 seq prokMSA_id:083243 AY241424 Photobacterium sp. UST020129-014 2.28.3.23.1.7.999 poor quality 5 seqs prokMSA_id:082846 AB099405 Photobacterium phosphoreum prokMSA_id:040805 AF261057 Photobacterium phosphoreum prokMSA_id:044088 AJ318947 Photobacterium phosphoreum strain S1-04 prokMSA_id:009166 D11186 Photobacterium phosphoreum ATCC 11040 . prokMSA_id:009164 X70636 Photobacterium iliopiscarium str. PS1 . 2.28.3.23.2 V.ORIENTALIS_SUBGROUP 7 seqs 2.28.3.23.2.001 OTU 1 seq prokMSA_id:009171 Z21731 Vibrio orientalis str. 716 ATCC 33933. 2.28.3.23.2.002 OTU 1 seq prokMSA_id:009170 X74719 Vibrio orientalis str. 717 CIP 102891 . 2.28.3.23.2.003 OTU 2 seqs prokMSA_id:060378 AF513461 Vibrio sp. PH1 prokMSA_id:038009 AJ296157 marine PP-145.98 2.28.3.23.2.004 OTU 1 seq prokMSA_id:063324 AF523891 clone RCP2-22 2.28.3.23.2.999 poor quality 2 seqs prokMSA_id:073546 AJ316177 Vibrio sp. R-15048 strain R-15048 prokMSA_id:009169 D11215 Vibrio orientalis str. 717 ATCC 33934 . 2.28.3.23.3 VIBRIO_SUBGROUP 358 seqs 2.28.3.23.3.1 V.FURNISSII_SUBGROUP 21 seqs 2.28.3.23.3.1.001 OTU 7 seqs prokMSA_id:082905 AJ550855 Allomonas enterica strain LMG 21754 prokMSA_id:091451 AY345377 JB5 prokMSA_id:091821 AY345409 K2-61 prokMSA_id:009173 X74703 Vibrio fluvialis str. VL 5125 NCIMB 2249. prokMSA_id:009178 X74704 Vibrio furnissii CIP 102972 . prokMSA_id:009176 X76336 Vibrio furnissii ATCC 35016 . prokMSA_id:009174 X97987 Vibrio sp. str. VI737/19. 2.28.3.23.3.1.002 OTU 1 seq prokMSA_id:009175 X76335 Vibrio fluvialis str. VL 5125 NCTC 11327 . 2.28.3.23.3.1.003 OTU 1 seq prokMSA_id:017176 AF465381 Gamma UST991130-027 2.28.3.23.3.1.004 OTU 1 seq prokMSA_id:060374 AF513465 Vibrio sp. PH19 2.28.3.23.3.1.005 OTU 1 seq prokMSA_id:070306 AJ316194 Vibrio sp. LMG 19999 strain LMG 19999 2.28.3.23.3.1.006 OTU 1 seq prokMSA_id:083112 AY177719 Vibrionaceae T16 2.28.3.23.3.1.007 OTU 1 seq prokMSA_id:091087 AY345454 K98 2.28.3.23.3.1.008 OTU 1 seq prokMSA_id:091241 AY345386 JB13 2.28.3.23.3.1.009 OTU 1 seq prokMSA_id:091797 AY345376 JB7 2.28.3.23.3.1.999 poor quality 6 seqs prokMSA_id:009177 AF094772 str. WB2. prokMSA_id:052816 AF296148 DMSP-degrading marine JA35 prokMSA_id:032468 AF300982 Skdkislt2 prokMSA_id:041215 AF357183 Vibrio sp. C129 prokMSA_id:060039 AJ316184 Vibrio sp. R-15090 strain R-15090 prokMSA_id:009172 D11180 Listonella pelagia ATCC 25916 . 2.28.3.23.3.2 V.NEREIS_SUBGROUP 33 seqs 2.28.3.23.3.2.002 OTU 1 seq prokMSA_id:055813 AY136129 Vibrio sp. RED47 2.28.3.23.3.2.005 OTU 1 seq prokMSA_id:026621 AB031614 gamma TIHP302-28 2.28.3.23.3.2.006 OTU 1 seq prokMSA_id:026819 AF465395 Vibrio sp. UST991130-007 2.28.3.23.3.2.008 OTU 16 seqs prokMSA_id:023684 AB031650 gamma TIHP368-50 prokMSA_id:029402 AF465378 Vibrio sp. UST991130-024 prokMSA_id:082115 AH012613 Vibrio sp. R10 prokMSA_id:094006 AJ345063 Vibrio probioticus strain LMG 20362T prokMSA_id:071757 AJ490150 Vibrio neptunius strain LMG 20613 prokMSA_id:070106 AJ490152 Vibrio xuii strain LMG 21347 prokMSA_id:066026 AY034144 Vibrio sp. C33 prokMSA_id:059159 AY136109 Vibrio sp. MED67 prokMSA_id:081233 AY217770 Vibrio sp. R10 prokMSA_id:085630 AY241396 Vibrio sp. UST010723-001 prokMSA_id:095125 AY374381 Vibrio sp. clone 14-131 prokMSA_id:095164 AY374388 Vibrio sp. clone 14-178 prokMSA_id:094662 AY374389 Vibrio sp. clone 14-180 prokMSA_id:094937 AY374396 Vibrio sp. clone 2-25 prokMSA_id:094869 AY374397 Vibrio sp. clone 2-262 prokMSA_id:009180 X74725 Vibrio tubiashii CIP 102760 . 2.28.3.23.3.2.009 OTU 1 seq prokMSA_id:029877 AF343948 Vibrio sp. NBF27 2.28.3.23.3.2.010 OTU 1 seq prokMSA_id:033548 AF465382 Vibrio sp. UST991130-028 2.28.3.23.3.2.011 OTU 1 seq prokMSA_id:034147 AF465377 Vibrio sp. UST991130-023 2.28.3.23.3.2.012 OTU 1 seq prokMSA_id:084403 AY241404 Vibrio sp. UST010723-010 2.28.3.23.3.2.999 poor quality 10 seqs prokMSA_id:027983 AB031620 gamma TIHP302-35a prokMSA_id:045164 AB031635 gamma TIHP368-12b prokMSA_id:067935 AF365838 clone BT60PA10BE10 prokMSA_id:071152 AJ316170 Vibrio sp. LMG 20548 strain LMG 20548 prokMSA_id:071167 AJ316201 Vibrio sp. R-14825 strain R-14825 prokMSA_id:073394 AJ318952 Vibrio sp. AF3-15 strain AF3-15 prokMSA_id:070057 AJ440004 Vibrio corallilyticus strain LMG 21349 prokMSA_id:071087 AJ490151 Vibrio brasiliensis strain LMG 20010 prokMSA_id:083657 AY241406 Vibrio sp. UST010723-012 prokMSA_id:009179 X74716 Vibrio nereis CIP 103194 . 2.28.3.23.3.3 V.SALMONICIDA_SUBGROUP 24 seqs 2.28.3.23.3.3.003 OTU 8 seqs prokMSA_id:071160 AF022410 Vibrio sp. ANG.HOH prokMSA_id:020390 AF323992 Vibrio logei prokMSA_id:009184 AJ132227 Vibrio wodanis str. NVI 88/441T. prokMSA_id:065248 AJ278426 Vibrio sp. Torgnes 1 prokMSA_id:033640 AJ437616 Vibrio logei strain NCIMB 2252 prokMSA_id:095072 AY374410 Vibrio sp. clone 6-279 prokMSA_id:094732 AY374412 Vibrio sp. clone 6-294 prokMSA_id:009185 Y17575 Vibrio wodanis. 2.28.3.23.3.3.004 OTU 1 seq prokMSA_id:080387 AF468281 clone ARKIA-92 2.28.3.23.3.3.999 poor quality 15 seqs prokMSA_id:021811 AF255621 Vibrio sp. O6N-21 prokMSA_id:018893 AF257289 marine gamma DHB-41 prokMSA_id:074307 AJ318949 Vibrio sp. AF4-08 strain AF4-08 prokMSA_id:073236 AJ318950 Vibrio sp. OF1-05 strain OF1-05 prokMSA_id:072028 AJ414135 Vibrio salmonicida strain AF7-16 prokMSA_id:070642 AJ414136 Vibrio salmonicida strain MF1-05 prokMSA_id:075676 AY158028 Vibrio sp. LnSQ6 prokMSA_id:009182 D11207 Vibrio logei str. PS207 R.R. Colwell ATCC 15382. prokMSA_id:009188 X70637 Vibrio salmonicida str. PT2. prokMSA_id:009186 X70638 Vibrio salmonicida HI 11366-2. prokMSA_id:009187 X70639 Vibrio salmonicida HI 11391. prokMSA_id:009189 X70643 Vibrio salmonicida NCIMB 2262 . prokMSA_id:009190 X71811 Vibrio salmonicida str. halibut. prokMSA_id:009181 X71813 Vibrio fischeri NCIMB 1274. prokMSA_id:009183 X74708 Vibrio logei str. PS207 R.R. Colwell CIP 103204 . 2.28.3.23.3.4 V.FISCHERI_SUBGROUP 15 seqs 2.28.3.23.3.4.001 OTU 1 seq prokMSA_id:009195 AF159675 clone HstpL49. 2.28.3.23.3.4.002 OTU 1 seq prokMSA_id:009194 X74702 Vibrio fischeri NCIMB 1281 . 2.28.3.23.3.4.003 OTU 1 seq prokMSA_id:042572 U70699 gamma OM182 2.28.3.23.3.4.004 OTU 1 seq prokMSA_id:080175 AF468261 clone ARKDMS-58 2.28.3.23.3.4.005 OTU 1 seq prokMSA_id:095060 AY368592 clone nc-04 2.28.3.23.3.4.006 OTU 2 seqs prokMSA_id:097969 AY386342 Marine gamma HTCC2151 prokMSA_id:096902 AY386343 Marine gamma HTCC2180 2.28.3.23.3.4.999 poor quality 8 seqs prokMSA_id:051006 AF287035 gamma EC-I52 prokMSA_id:072062 AJ414134 Vibrio sp. AF4-07 strain AF4-07 prokMSA_id:069955 AJ414138 Vibrio salmonicida strain AG8-07 prokMSA_id:090765 AY317123 Gamma SKA56 prokMSA_id:009193 D11202 Vibrio fischeri ATCC 7744 . prokMSA_id:028784 U70700 gamma OM185 prokMSA_id:009191 X70640 Vibrio fischeri NCIMB 1281 . prokMSA_id:009192 Z21729 Photobacterium fischeri str. MJ-1. 2.28.3.23.3.5 V.PROTEOLYTICUS_SUBGROUP 38 seqs 2.28.3.23.3.5.001 OTU 1 seq prokMSA_id:009201 X74717 Vibrio nigripulchritudo CIP 103195 . 2.28.3.23.3.5.002 OTU 1 seq prokMSA_id:009197 AF199438 Vibrio DS40M5 str. DS40M5. 2.28.3.23.3.5.003 OTU 5 seqs prokMSA_id:059705 AB081772 Vibrio sp. 442 prokMSA_id:029041 AF384142 Gamma NW4079 prokMSA_id:060376 AF513463 Vibrio proteolyticus prokMSA_id:091504 AY345467 K52 prokMSA_id:009196 X74723 Vibrio proteolyticus str. 262 CIP 102892 . 2.28.3.23.3.5.004 OTU 1 seq prokMSA_id:030612 AB041293 ECS23 2.28.3.23.3.5.005 OTU 2 seqs prokMSA_id:050709 AF366021 Marine gamma SWAT2 prokMSA_id:060710 AY125907 Vibrio sp. C4d 2.28.3.23.3.5.006 OTU 1 seq prokMSA_id:082011 AY217772 Vibrio sp. BLI-41 2.28.3.23.3.5.007 OTU 4 seqs prokMSA_id:084867 AH012633 Vibrio hispanicus strain LMG 13213 5' and 3' ends prokMSA_id:086002 AY254039 Vibrio hispanicus strain LMG 13240 clone 1 prokMSA_id:086115 AY254040 Vibrio hispanicus strain LMG 13240 clone 2 prokMSA_id:082765 AY254041 Vibrio hispanicus strain LMG 13211 2.28.3.23.3.5.008 OTU 1 seq prokMSA_id:091588 AY345462 K59 2.28.3.23.3.5.999 poor quality 22 seqs prokMSA_id:038218 AF055814 Marine 'Bird Shoal 12-2' prokMSA_id:017114 AF055820 Marine 'Bird Shoal sa4' prokMSA_id:049186 AF055825 Marine 'Tomales Bay 13-32' prokMSA_id:027040 AF055826 Marine 'Tomales Bay 14-24' prokMSA_id:023260 AF055827 Marine 'Tomales Bay 2-31' prokMSA_id:023834 AF055828 Marine 'Tomales Bay 5-24' prokMSA_id:049497 AF055830 Marine 'Tomales Bay mg10' prokMSA_id:023642 AF055831 Marine 'Tomales Bay mg15' prokMSA_id:021278 AF343923 Vibrio sp. NBF2 prokMSA_id:053087 AF366014 Marine gamma LHFL4 prokMSA_id:038394 AF441951 gamma clone CD12C4 prokMSA_id:037572 AF441953 gamma clone CD12C6 prokMSA_id:073723 AJ316178 Vibrio sp. LMG 13240 strain LMG 13240 prokMSA_id:072446 AJ316183 Vibrio sp. R-15065 strain R-15065 prokMSA_id:043758 AJ391168 Vibrio sp. AS-4 prokMSA_id:017637 AY050527 Vibrio sp. SIGA28M prokMSA_id:024318 AY050529 Vibrio sp. SIGA198 prokMSA_id:083966 AY254042 Vibrio hispanicus strain LMG 13213 complete prokMSA_id:009202 D11213 Vibrio nigripulchritudo ATCC 27043 . prokMSA_id:009200 D11217 Vibrio proteolyticus str. 262 NCIMB 1326 . prokMSA_id:009198 U37801 Vibrio proteolyticus str. q136. prokMSA_id:009199 U37802 Vibrio proteolyticus str. q138. 2.28.3.23.3.6 V.HARVEYI_SUBGROUP 227 seqs 2.28.3.23.3.6.008 OTU 2 seqs prokMSA_id:009231 AF159668 clone HstpL18. prokMSA_id:094316 AY374387 Vibrio sp. clone 14-168 2.28.3.23.3.6.009 OTU 1 seq prokMSA_id:009213 X56580 Vibrio parahaemolyticus str. 113 ATCC 17802 . 2.28.3.23.3.6.010 OTU 9 seqs prokMSA_id:009208 AB000390 Vibrio halioticoli str. A431 IAM 14596 . prokMSA_id:009209 AB000391 Vibrio halioticoli IAM 14597. prokMSA_id:009210 AB000392 Vibrio halioticoli IAM 14598. prokMSA_id:009211 AB000393 Vibrio halioticoli IAM 14599. prokMSA_id:057782 AF519806 Vibrio supersteus prokMSA_id:076451 AY155582 Vibrio supersteus strain B2-3 prokMSA_id:076442 AY155583 Vibrio supersteus strain G3-11 prokMSA_id:074888 AY155584 Vibrio supersteus strain G3-15 prokMSA_id:075372 AY155585 Vibrio supersteus strain G3-29 2.28.3.23.3.6.011 OTU 1 seq prokMSA_id:017817 AF424115 gamma MERTZ_2CM_275 2.28.3.23.3.6.013 OTU 1 seq prokMSA_id:059545 AF537958 Vibrio alginolyticus strain VM102 2.28.3.23.3.6.014 OTU 1 seq prokMSA_id:019456 AF218244 Vibrio sp. 2.28.3.23.3.6.016 OTU 1 seq prokMSA_id:024785 AF465388 Vibrio sp. UST991130-033 2.28.3.23.3.6.017 OTU 1 seq prokMSA_id:024983 AF284228 Vibrio sp. 59 2.28.3.23.3.6.018 OTU 1 seq prokMSA_id:024993 AF249335 Vibrio sp. GIT-14 2.28.3.23.3.6.019 OTU 1 seq prokMSA_id:030332 AF465363 Vibrio sp. UST991130-046 2.28.3.23.3.6.022 OTU 2 seqs prokMSA_id:068895 AJ421444 Vibrio penaeicida strain DSM 14398T prokMSA_id:070325 AJ437191 Vibrio penaeicida strain LMG 19663T 2.28.3.23.3.6.025 OTU 1 seq prokMSA_id:042368 AB031616 gamma TIHP302-30 2.28.3.23.3.6.026 OTU 1 seq prokMSA_id:046972 AF465370 Vibrio sp. UST991130-013 2.28.3.23.3.6.027 OTU 1 seq prokMSA_id:050075 AF343931 Vibrio sp. NBF10 2.28.3.23.3.6.028 OTU 1 seq prokMSA_id:070729 AF284226 Vibrio sp. 05 2.28.3.23.3.6.029 OTU 1 seq prokMSA_id:074214 AF249334 Vibrio sp. GIT-70 2.28.3.23.3.6.030 OTU 1 seq prokMSA_id:083211 AY245191 Vibrio parahaemolyticus isolate 22 2.28.3.23.3.6.032 OTU 5 seqs prokMSA_id:084052 AY257971 Vibrio gallicus strain CIP 107864 prokMSA_id:086444 AY257972 Vibrio gallicus strain CIP 107863 prokMSA_id:085428 AY257973 Vibrio gallicus strain CIP 107865 prokMSA_id:084964 AY257974 Vibrio gallicus strain CIP 107866 prokMSA_id:084937 AY257975 Vibrio gallicus strain CIP 107867 2.28.3.23.3.6.033 OTU 127 seqs prokMSA_id:050697 AB031591 gamma TIHP302-03 prokMSA_id:038929 AB031593 gamma TIHP302-05 prokMSA_id:023237 AB031597 gamma TIHP302-11 prokMSA_id:074469 AB031599 gamma TIHP302-13 prokMSA_id:037336 AB031603 gamma TIHP302-17 prokMSA_id:035480 AB031622 gamma TIHP302-36 prokMSA_id:047529 AB031624 gamma TIHP302-38 prokMSA_id:020262 AB031637 gamma TIHP368-18 prokMSA_id:038315 AB031643 gamma TIHP368-24 prokMSA_id:016645 AB031655 gamma TIHP368-60 prokMSA_id:034260 AF064559 Vibrio sp. 172 prokMSA_id:009229 AF064637 Vibrio NAP-4 str. NAP-4. prokMSA_id:009207 AF094701 Vibrio Lu1 str. Lu1. prokMSA_id:009216 AF094702 Vibrio Lu8 str. Lu8. prokMSA_id:047639 AF108137 Vibrio sp. 'Artemia' prokMSA_id:009215 AF134581 Vibrio carchariae. prokMSA_id:072695 AF246980 Vibrio sp. 98CJ11027 prokMSA_id:021967 AF284227 Vibrio sp. 73 prokMSA_id:071462 AF284229 Vibrio sp. 01 prokMSA_id:029344 AF319768 Vibrio sp. BB4 prokMSA_id:024526 AF319769 Vibrio sp. Ex25 prokMSA_id:056540 AF319770 Vibrio sp. Ex97 prokMSA_id:045699 AF369642 Vibrio sp. AB003 prokMSA_id:047824 AF388386 Vibrio parahaemolyticus clone Vp23 prokMSA_id:048726 AF388387 Vibrio parahaemolyticus clone Vp16 prokMSA_id:036201 AF388388 Vibrio parahaemolyticus clone F44 prokMSA_id:048633 AF388389 Vibrio parahaemolyticus clone Vp 27 prokMSA_id:034170 AF410778 Vibrio sp. NLEP97-1598 prokMSA_id:073398 AF410779 Vibrio sp. NLEP97-1599 prokMSA_id:039681 AF426805 Vibrio harveyi from USA prokMSA_id:023622 AF426806 Vibrio harveyi from Taiwan prokMSA_id:026370 AF426807 Vibrio sp. VIB 655 from France prokMSA_id:048351 AF426808 Vibrio sp. VIB 660 from Greece prokMSA_id:033762 AF426809 Vibrio sp. VIB 657 from France prokMSA_id:028941 AF426810 Vibrio sp. VIB 656 from Greece prokMSA_id:046490 AF426811 Vibrio harveyi VIB 295 prokMSA_id:049839 AF426812 Vibrio sp. VIB 645 from Tunisia prokMSA_id:025040 AF426814 Vibrio harveyi VIB 286 prokMSA_id:041901 AF426815 Vibrio sp. VIB 651 from Denmark prokMSA_id:043255 AF426817 Vibrio sp. VIB 573 from Spain prokMSA_id:045218 AF426818 Vibrio sp. VIB 697 from Spain prokMSA_id:037058 AF426819 Vibrio sp. VIB 654 from Denmark prokMSA_id:034384 AF426820 Vibrio sp. VIB 403 from Thailand prokMSA_id:018403 AF426821 Vibrio sp. VIB 394 from Australia prokMSA_id:043004 AF426822 Vibrio sp. VIB 570 from Spain prokMSA_id:019955 AF426823 Vibrio sp. VIB 411 from South Africa prokMSA_id:041638 AF426824 Vibrio campbellii ATCC 25920 prokMSA_id:032380 AF426825 Vibrio harveyi ATCC 14126 prokMSA_id:018229 AF465367 Vibrio sp. UST991130-010 prokMSA_id:048993 AF465368 Vibrio sp. UST991130-011 prokMSA_id:030820 AF465375 Vibrio sp. UST991130-020 prokMSA_id:051209 AF465376 Vibrio sp. UST991130-022 prokMSA_id:050151 AF465386 Vibrio sp. UST991130-031 prokMSA_id:084254 AF500207 Vibrio sp. CJ11052 prokMSA_id:055336 AF513447 Vibrio alginolyticus prokMSA_id:059546 AF537957 Vibrio alginolyticus strain VM2 prokMSA_id:059547 AF537959 Vibrio alginolyticus strain VM122 prokMSA_id:072747 AF537960 Vibrio alginolyticus strain VM341 prokMSA_id:059476 AF540018 Vibrio parahaemolyticus strain RLUH-1 prokMSA_id:046271 AJ293802 Vibrio pelagius strain CECT 4202T prokMSA_id:032562 AJ310647 Vibrio agarivorans strain 289T CECT 5085T prokMSA_id:021984 AJ310648 Vibrio agarivorans strain 351A CECT 5084 prokMSA_id:071300 AJ316168 Vibrio sp. R-14968 strain R-14968 prokMSA_id:073534 AJ316169 Vibrio sp. LMG 19270 strain LMG 19270 prokMSA_id:070114 AJ316181 Vibrio sp. R-15052 strain R-15052 prokMSA_id:060045 AJ316187 Vibrio sp. R-14939 strain R-14939 prokMSA_id:072857 AJ316202 Vibrio sp. LMG 20547 strain LMG 20547 prokMSA_id:094010 AJ345064 Vibrio sp. LMG 20363 strain LMG 20363 prokMSA_id:094061 AJ345065 Vibrio sp. LMG 20369 strain LMG 20369 prokMSA_id:093936 AJ345066 Vibrio sp. LMG 20370 strain LMG 20370 prokMSA_id:026876 AJ391193 Vibrio sp. AS-32 prokMSA_id:098420 AJ508771 Vibrio sp. TR1 strain TR1 prokMSA_id:095063 AJ514916 Vibrio fortis strain LMG 21557T prokMSA_id:082362 AP005073 Vibrio parahaemolyticus chromosome 1 complete 1/11 prokMSA_id:081878 AP005074 Vibrio parahaemolyticus chromosome 1 complete 2/11 prokMSA_id:082286 AP005083 Vibrio parahaemolyticus chromosome 1 complete 11/11 prokMSA_id:031661 AY035896 Vibrio campbellii prokMSA_id:037197 AY038544 gamma clone CD4E6 prokMSA_id:050883 AY046956 Vibrio harveyi strain M4 prokMSA_id:082995 AY241409 Vibrio sp. UST010723-015 prokMSA_id:084441 AY245178 Vibrio parahaemolyticus isolate 13 prokMSA_id:086674 AY245180 Vibrio vulnificus isolate 4 prokMSA_id:083444 AY245185 Vibrio parahaemolyticus isolate 15 prokMSA_id:084838 AY245186 Vibrio parahaemolyticus isolate 17 prokMSA_id:085262 AY245187 Vibrio parahaemolyticus isolate 18 prokMSA_id:084057 AY245188 Vibrio parahaemolyticus isolate L21 prokMSA_id:086641 AY245189 Vibrio vulnificus isolate 9 prokMSA_id:086266 AY245190 Vibrio parahaemolyticus isolate 21 prokMSA_id:085704 AY245193 Vibrio parahaemolyticus isolate 9 prokMSA_id:082812 AY245194 Vibrio vulnificus isolate 5a prokMSA_id:084064 AY245195 Vibrio vulnificus isolate 7 prokMSA_id:085922 AY245196 Vibrio vulnificus isolate L2 prokMSA_id:088917 AY321394 clone L19 prokMSA_id:089959 AY321409 clone M144 prokMSA_id:091201 AY332564 Vibrio harveyi strain EcGY020401 prokMSA_id:091969 AY332565 Vibrio harveyi strain EcGS020802 prokMSA_id:091317 AY332566 Vibrio alginolyticus strain EcGS021001 prokMSA_id:091454 AY344374 clone K2-S-4 prokMSA_id:091497 AY345378 JB4 prokMSA_id:091007 AY345403 K2-74 prokMSA_id:091767 AY345459 K7 prokMSA_id:091753 AY345519 clone W1A-F10 prokMSA_id:094344 AY373027 Vibrio alginolyticus prokMSA_id:095098 AY374383 Vibrio sp. clone 14-136 prokMSA_id:094850 AY374390 Vibrio sp. clone 14-195 prokMSA_id:094528 AY374391 Vibrio sp. clone 2-129 prokMSA_id:094712 AY374399 Vibrio sp. clone 2-275 prokMSA_id:095100 AY374401 Vibrio sp. clone 2-290 prokMSA_id:081625 NC_004603 Vibrio parahaemolyticus RIMD 2210633 chromosome I complete prokMSA_id:082255 NC_004605 Vibrio parahaemolyticus RIMD 2210633 chromosome II complete prokMSA_id:009219 X56575 Vibrio campbellii str. 40 ATCC 25920 . prokMSA_id:009226 X56576 Vibrio alginolyticus str. XII-53 ATCC 17749 . prokMSA_id:009236 X56578 Vibrio harveyi ATCC 14126 . prokMSA_id:009235 X56578 Vibrio harveyi ATCC 14126 . prokMSA_id:009238 X56581 Vibrio natriegens str. 111 ATCC 14048 . prokMSA_id:009234 X74690 Vibrio alginolyticus str. XII-53 CIP 75.03. prokMSA_id:009223 X74691 Vibrio alginolyticus CIP 70.65. prokMSA_id:009205 X74692 Vibrio campbellii str. 40 CIP 75.01 . prokMSA_id:009214 X74693 Vibrio harveyi ATCC 35084 . prokMSA_id:009243 X74706 Vibrio harveyi CIP 103192 . prokMSA_id:009230 X74714 Vibrio natriegens str. 111 CIP 103193 . prokMSA_id:009240 X74720 Vibrio parahaemolyticus str. 113 CIP 75.02. prokMSA_id:009227 X74721 Vibrio parahaemolyticus CIP 73.30. prokMSA_id:009232 X97988 Vibrio sp. str. VI966/26. prokMSA_id:009241 X97989 Vibrio sp. str. VI1067/44. prokMSA_id:009224 X97990 Vibrio sp. str. VI1964/75. prokMSA_id:009233 X99761 Vibrio mytili. 2.28.3.23.3.6.034 OTU 1 seq prokMSA_id:091529 AY345427 K10 2.28.3.23.3.6.035 OTU 1 seq prokMSA_id:093877 AF493804 Vibrio fischeri 2.28.3.23.3.6.036 OTU 1 seq prokMSA_id:094558 AY374398 Vibrio sp. clone 2-274 2.28.3.23.3.6.037 OTU 1 seq prokMSA_id:095076 AY374386 Vibrio sp. clone 14-166 2.28.3.23.3.6.999 poor quality 64 seqs prokMSA_id:038451 AB031604 gamma TIHP302-18 prokMSA_id:021476 AF025548 Vibrio campbellii prokMSA_id:032026 AF025960 Vibrio campbellii prokMSA_id:016941 AF026390 Vibrio campbellii prokMSA_id:033556 AF055811 Marine 'Bird Shoal sw4' prokMSA_id:030113 AF055813 Marine 'Bird Shoal 1-9' prokMSA_id:041078 AF055815 Marine 'Bird Shoal 1-31' prokMSA_id:041264 AF055817 Marine 'Bird Shoal 6-2' prokMSA_id:045047 AF055832 Marine 'Tomales Bay wh' prokMSA_id:025258 AF055833 Marine 'Tomales Bay med white' prokMSA_id:074592 AF139723 Catenococcus thiocyclus prokMSA_id:044077 AF296138 DMSP-degrading marine JA1 prokMSA_id:028148 AF300981 Skdkislt1 prokMSA_id:027275 AF343952 Vibrio sp. NBF31 prokMSA_id:068265 AF365449 clone BM89MF1BB11 prokMSA_id:021859 AF366009 Marine gamma DC prokMSA_id:047328 AF366013 Marine gamma LHAT5 prokMSA_id:020989 AF388390 Vibrio parahaemolyticus prokMSA_id:052370 AF441945 gamma clone CD12C12 prokMSA_id:051025 AF441998 gamma clone CD12E3 prokMSA_id:016743 AF465366 Gamma UST991130-001 prokMSA_id:029103 AF465373 Vibrio sp. UST991130-017 prokMSA_id:019023 AF465374 Vibrio sp. UST991130-018 prokMSA_id:033612 AF465389 Vibrio sp. UST991130-034 prokMSA_id:030795 AF465398 Vibrio sp. UST991130-019 prokMSA_id:066969 AF503861 Vibrio sp. 'Belize Reef cb2216s4' prokMSA_id:072939 AJ312382 Vibrio trachuri strain LMG 19643 prokMSA_id:072620 AJ316172 Vibrio sp. LMG 20546 strain LMG 20546 prokMSA_id:070900 AJ316176 Vibrio sp. R-15041 strain R-15041 prokMSA_id:060038 AJ316185 Vibrio sp. R-14913 strain R-14913 prokMSA_id:069785 AJ316186 Vibrio sp. R-14928 strain R-14928 prokMSA_id:060030 AJ316191 Vibrio sp. R-14855 strain R-14855 prokMSA_id:072077 AJ316195 Vibrio sp. R-14784 strain R-14784 prokMSA_id:071398 AJ316204 Vibrio sp. R-14876 strain R-14876 prokMSA_id:074411 AJ316205 Vibrio sp. LMG 19972 strain LMG 19972 prokMSA_id:074377 AJ316206 Vibrio sp. LMG 19970 strain LMG 19970 prokMSA_id:025826 AJ318951 Vibrio sp. AE1-24 strain AE1-24 prokMSA_id:071639 AJ318953 Vibrio sp. AF7-03 strain AF7-03 prokMSA_id:095005 AJ508300 Vibrio sp. SR2 prokMSA_id:041883 AY038409 gamma clone CD5H12 prokMSA_id:059168 AY136128 Vibrio alginolyticus prokMSA_id:085690 AY241397 Vibrio sp. UST010723-002 prokMSA_id:083695 AY241432 Vibrio sp. UST020129-021 prokMSA_id:083061 AY241433 Vibrio sp. UST020129-010 prokMSA_id:086981 AY270185 Vibrio sp. Ms 121 prokMSA_id:094538 AY321531 Marine 13705 prokMSA_id:095012 AY321532 Marine 13706 prokMSA_id:092672 AY357894 Vibrio alginolyticus strain NRL-CB9 prokMSA_id:092701 AY357902 Vibrio sp. NRL-TS19 prokMSA_id:092741 AY357910 Vibrio alginolyticus strain NRL-SS41 prokMSA_id:009220 D11192 Vibrio alginolyticus str. XII-53 NCIMB 1903 . prokMSA_id:009237 D11193 Vibrio campbellii str. 40 ATCC 25920 . prokMSA_id:009225 D11194 Vibrio harveyi ATCC 35084 . prokMSA_id:009212 D11203 Vibrio fluvialis str. VL 5125 NCTC 11328. prokMSA_id:009204 D11205 Vibrio harveyi ATCC 14126 . prokMSA_id:009222 D11212 Vibrio nereis ATCC 25917 . prokMSA_id:009242 D11216 Vibrio parahaemolyticus str. 113 ATCC 17802 . prokMSA_id:009221 M58172 Vibrio harveyi. prokMSA_id:009239 M59161 Vibrio parahaemolyticus str. 113 ATCC 17802 . prokMSA_id:009217 X56579 Vibrio proteolyticus str. 262 ATCC 15338 . prokMSA_id:009203 X70642 Listonella pelagia NCIMB 1900 . prokMSA_id:009218 X74722 Listonella pelagia CIP 102762 . prokMSA_id:009228 X99762 Vibrio diabolicus str. HE800 CNCM I-1629 . prokMSA_id:009206 Z77519 str. 2-400 C2.19. 2.28.3.23.4 V.MEDITERRANEI_SUBGROUP 21 seqs 2.28.3.23.4.001 OTU 1 seq prokMSA_id:009250 Z19080 symbiont of Photoblepharon steinetzi. 2.28.3.23.4.002 OTU 1 seq prokMSA_id:009249 Z19003 symbiont of Kryptophanaron alfredi. 2.28.3.23.4.003 OTU 4 seqs prokMSA_id:009248 AF007115 Vibrio shiloi str. AK-1. prokMSA_id:048736 AF426813 Vibrio sp. VIB 350 from Bahamas prokMSA_id:094725 AY374392 Vibrio sp. clone 2-215 prokMSA_id:009247 X74710 Vibrio mediterranei CIP 103203 . 2.28.3.23.4.004 OTU 1 seq prokMSA_id:009246 Z19081 symbiont of Anomalops katoptron. 2.28.3.23.4.005 OTU 1 seq prokMSA_id:009245 Z19085 symbiont of Photoblepharon palpebratus. 2.28.3.23.4.006 OTU 1 seq prokMSA_id:009244 Z19079 symbiont of Photoblepharon palpebratus. 2.28.3.23.4.007 OTU 1 seq prokMSA_id:051068 AF343925 Vibrio sp. NBF4 2.28.3.23.4.008 OTU 2 seqs prokMSA_id:072904 AJ316171 Vibrio sp. LMG 20536 strain LMG 20536 prokMSA_id:066767 AJ440005 Vibrio corallilyticus strain LMG 20984 2.28.3.23.4.009 OTU 1 seq prokMSA_id:093679 AF493803 Vibrio sp. 167 2.28.3.23.4.999 poor quality 8 seqs prokMSA_id:040067 AB041294 ECS24 prokMSA_id:074170 AB055795 Vibrio sp. Gdeep-1 prokMSA_id:074606 AB062553 Vibrio cf. shilonii strain:No.25 prokMSA_id:027090 AB062554 Vibrio cf. shilonii strain:No.52 prokMSA_id:040215 AB062555 Vibrio cf. shilonii strain:No.7 prokMSA_id:023305 AF366011 Marine gamma LHAT1A prokMSA_id:037500 AF442000 gamma clone CD12E5 prokMSA_id:052796 U64006 Vibrio sp. SCB29 2.28.3.23.5 V.SPLENDIDUS_SUBGROUP 239 seqs 2.28.3.23.5.001 OTU 3 seqs prokMSA_id:009282 AB013297 Vibrio rumoiensis str. S-1. prokMSA_id:036434 AF426816 Vibrio sp. VIB 400 from USA prokMSA_id:094858 AY374395 Vibrio sp. clone 2-249 2.28.3.23.5.003 OTU 1 seq prokMSA_id:009280 AF159670 clone HstpL66. 2.28.3.23.5.016 OTU 1 seq prokMSA_id:018737 AF195477 Vibrio kps60rc 2.28.3.23.5.019 OTU 1 seq prokMSA_id:025702 AF064557 Vibrio sp. 121 2.28.3.23.5.021 OTU 122 seqs prokMSA_id:030309 AB022609 Vibrio sp. SA16 prokMSA_id:022968 AB022610 Vibrio sp. SA41 prokMSA_id:023677 AB022614 Vibrio sp. SA59 prokMSA_id:019593 AB022616 Vibrio sp. SA68 prokMSA_id:036041 AB022618 Vibrio sp. SA79 prokMSA_id:026484 AB038024 Vibrio sp. EN280 prokMSA_id:045173 AB038025 Vibrio sp. TK327 prokMSA_id:043627 AB038026 Vibrio sp. OC25 prokMSA_id:017434 AB038029 Vibrio sp. OM02 prokMSA_id:047694 AB038030 Vibrio splendidus biovar II prokMSA_id:033679 AB055786 Vibrio sp. Csur-1 prokMSA_id:073863 AB055792 Vibrio sp. Cdeep-1 prokMSA_id:040343 AB055796 Vibrio sp. Hdeep-1 prokMSA_id:009281 AF022409 Vibrio ANG.218 str. ANG.strain 218. prokMSA_id:049842 AF064556 Vibrio sp. 41 prokMSA_id:009255 AF159669 clone HstpL41. prokMSA_id:024584 AF172840 Vibrio aestuarianus prokMSA_id:026716 AF242271 Vibrio sp. Da2 prokMSA_id:046227 AF242272 Vibrio sp. Da4 prokMSA_id:031562 AF242273 Vibrio sp. Sr3 prokMSA_id:049860 AF242274 Vibrio sp. Sk1 prokMSA_id:042870 AF293974 4c prokMSA_id:046685 AF388391 Vibrio sp. 3d clone 3d2 prokMSA_id:067338 AF388392 Vibrio sp. 3d clone 3d4 prokMSA_id:052051 AF388393 Vibrio sp. 3d clone 3d7 prokMSA_id:054302 AF388394 Vibrio sp. 3d clone 3d8 prokMSA_id:072609 AF456335 Vibrio sp. LT73 complete prokMSA_id:073493 AF456336 Vibrio sp. LT06 complete prokMSA_id:073369 AF456338 Vibrio sp. LT21 complete prokMSA_id:072056 AF456339 Vibrio sp. PMV18 complete prokMSA_id:022016 AF456340 Vibrio sp. PMV19 complete prokMSA_id:026392 AF465358 Vibrio sp. UST991130-040 prokMSA_id:019334 AF465365 Vibrio sp. UST991130-048 prokMSA_id:093574 AF493807 Vibrio aestuarianus strain 5.79 prokMSA_id:094237 AF493808 Vibrio aestuarianus strain 5.89 prokMSA_id:093497 AF493810 Listonella anguillarum strain 6.33 prokMSA_id:093533 AF493812 Listonella anguillarum strain 6.62 prokMSA_id:093676 AF493813 Vibrio splendidus prokMSA_id:093898 AF493814 Vibrio sp. P54 prokMSA_id:083795 AF539779 Pseudoalteromonas sp. R12 prokMSA_id:086378 AF539780 Pseudoalteromonas sp. R9 prokMSA_id:085836 AF539781 Pseudoalteromonas sp. RE1-12a prokMSA_id:082520 AF539782 Vibrio sp. RE1-3 prokMSA_id:085619 AF539783 Vibrio sp. RE2-8 prokMSA_id:009271 AJ002566 str. DPT1.1. prokMSA_id:009272 AJ002567 str. DPT1.2. prokMSA_id:061890 AJ244753 Vibrio sp. V4.BS.10 prokMSA_id:061888 AJ244754 Vibrio sp. V4.BP.13 prokMSA_id:073749 AJ244774 Vibrio sp. V4.BP.07 prokMSA_id:051176 AJ278880 Vibrio lentus strain 3OM21 CECT 5293 prokMSA_id:016828 AJ278881 Vibrio lentus strain 40M4T CECT 5110T prokMSA_id:039199 AJ310686 clone 334 prokMSA_id:023581 AJ310687 clone 249 prokMSA_id:028001 AJ310688 clone 253 prokMSA_id:038260 AJ310689 clone 247 prokMSA_id:025142 AJ310690 clone 272 prokMSA_id:073415 AJ316192 Vibrio sp. LMG 20012 strain LMG 20012 prokMSA_id:071896 AJ316193 Vibrio sp. LMG 20539 strain LMG 20539 prokMSA_id:071509 AJ316199 Vibrio sp. R-3712 strain R-3712 prokMSA_id:074168 AJ316200 Vibrio sp. R-3884 strain R-3884 prokMSA_id:071042 AJ316203 Vibrio sp. R-1556 strain R-1556 prokMSA_id:071902 AJ391203 Vibrio sp. AS-42 prokMSA_id:074395 AJ414132 Vibrio sp. SYS6-01 strain SYS6-01 prokMSA_id:070080 AJ490157 Vibrio chagasii strain LMG 13237 prokMSA_id:070314 AJ490158 Vibrio chagasii strain LMG 21354 prokMSA_id:073227 AJ491290 Vibrio pomeroyi strain LMG 20537T prokMSA_id:056555 AJ515218 Vibrio splendidus strain TNEMF6 prokMSA_id:074459 AJ515219 Vibrio splendidus strain TNNIII7 prokMSA_id:069396 AJ515220 Vibrio splendidus strain LMG 10952 prokMSA_id:074614 AJ515221 Vibrio splendidus strain LT06 prokMSA_id:074026 AJ515222 Vibrio splendidus strain A515 clone a prokMSA_id:072001 AJ515223 Vibrio splendidus strain A515 clone b prokMSA_id:056212 AJ515224 Vibrio splendidus strain PMV18 prokMSA_id:055282 AJ515225 Vibrio splendidus strain A053 clone a prokMSA_id:069421 AJ515226 Vibrio splendidus strain A053 clone b prokMSA_id:073914 AJ515227 Vibrio splendidus strain VC1 prokMSA_id:069386 AJ515228 Vibrio splendidus strain VS6turb prokMSA_id:069668 AJ515229 Vibrio splendidus strain LMG 4042 clone a prokMSA_id:069712 AJ515230 Vibrio splendidus strain LMG 4042 clone b prokMSA_id:079036 AJ536589 Vibrio lentus strain 7P prokMSA_id:094438 AJ582803 Vibrio sp. Mel 31 strain Mel 31 prokMSA_id:094803 AJ582804 Vibrio sp. Mel 32 strain Mel 32 prokMSA_id:094727 AJ582805 Vibrio sp. Mel 34 strain Mel 34 prokMSA_id:094359 AJ582806 Vibrio sp. Mel 35 strain Mel 35 prokMSA_id:094922 AJ582807 Vibrio sp. Mel 37 strain Mel 37 prokMSA_id:094542 AJ582808 Vibrio sp. Mel 7 strain Mel 7 prokMSA_id:095003 AJ582809 Vibrio sp. Mel 8 strain Mel 8 prokMSA_id:094830 AJ582810 Vibrio sp. Mel 13 strain Mel 13 prokMSA_id:030925 AY028201 Marine Tw-6 prokMSA_id:026431 AY035895 Vibrio sp. ED4 prokMSA_id:047083 AY046955 Vibrio splendidus strain B17 prokMSA_id:060708 AY125908 Vibrio sp. Cva prokMSA_id:078737 AY129277 Vibrio splendidus strain LP1 prokMSA_id:078597 AY129278 Vibrio tapetis strain LP2 prokMSA_id:055590 AY136105 Vibrio splendidus MED22 prokMSA_id:059160 AY136110 Vibrio sp. MED71 prokMSA_id:059172 AY136125 Listonella pelagia prokMSA_id:078974 AY174869 Vibrio sp. QY101 prokMSA_id:083134 AY226280 Vibrio sp. clone DBBB-11 prokMSA_id:084666 AY227706 Vibrio splendidus prokMSA_id:086217 AY241435 Vibrio sp. UST020129-023 prokMSA_id:083647 AY241438 Vibrio sp. UST020129-033 prokMSA_id:085356 AY241439 Vibrio sp. UST020129-034 prokMSA_id:085352 AY241441 Vibrio sp. UST020129-015 prokMSA_id:084463 AY241442 Vibrio sp. UST020129-032 prokMSA_id:086584 AY245181 Vibrio sp. 13a prokMSA_id:082987 AY245182 Vibrio sp. 3 prokMSA_id:083553 AY245183 Vibrio sp. 6 prokMSA_id:085453 AY245184 Vibrio sp. L5 prokMSA_id:086573 AY262019 Vibrio sp. YWA prokMSA_id:085910 AY262020 Vibrio sp. WYB prokMSA_id:095156 AY374400 Vibrio sp. clone 2-286 prokMSA_id:094796 AY374402 Vibrio sp. clone 6-118 prokMSA_id:094347 AY374403 Vibrio sp. clone 6-142 prokMSA_id:094575 AY374405 Vibrio sp. clone 6-231 prokMSA_id:094400 AY374406 Vibrio sp. clone 6-243 prokMSA_id:094714 AY374407 Vibrio sp. clone 6-247 prokMSA_id:095030 AY374409 Vibrio sp. clone 6-270 prokMSA_id:094475 AY374413 Vibrio sp. clone 8-14 prokMSA_id:009278 U57919 Vibrio 2P44 str. 2P44. prokMSA_id:009279 Y08430 Vibrio tapetis str. B1090 CECT 4600 . prokMSA_id:009268 Z31657 Vibrio splendidus str. SCB8. 2.28.3.23.5.022 OTU 1 seq prokMSA_id:033922 AB022617 Vibrio sp. SA73 2.28.3.23.5.023 OTU 1 seq prokMSA_id:083357 AY241434 Vibrio sp. UST020129-008 2.28.3.23.5.024 OTU 1 seq prokMSA_id:091619 AY345440 K20 2.28.3.23.5.025 OTU 1 seq prokMSA_id:093531 AY360512 clone BSB7-217m 2.28.3.23.5.026 OTU 1 seq prokMSA_id:093849 AY360502 clone BSB19-364m 2.28.3.23.5.027 OTU 1 seq prokMSA_id:094643 AY374393 Vibrio sp. clone 2-226 2.28.3.23.5.999 poor quality 105 seqs prokMSA_id:046202 AB010811 Vibrio sp. prokMSA_id:041699 AF022411 Vibrio sp. ANG.D14 prokMSA_id:047776 AF022412 Vibrio sp. ANG.D15 prokMSA_id:038952 AF025329 Vibrio splendidus prokMSA_id:031251 AF056463 Vibrio sp. LX3 prokMSA_id:030664 AF056464 Vibrio sp. LX4 prokMSA_id:027246 AF056466 Vibrio sp. LX6 prokMSA_id:019625 AF056468 Vibrio sp. LX8 prokMSA_id:050366 AF251770 Vibrio sp. Elimpetgut1.R1 prokMSA_id:021325 AF251771 Vibrio sp. Etwt2.M7p-b prokMSA_id:016377 AF261043 Vibrio splendidus prokMSA_id:073568 AF262743 Endocytic Noc2 prokMSA_id:017015 AF324884 Vibrio sp. SubDo-inf1 prokMSA_id:040120 AF324885 Vibrio sp. SubDo-inf2 prokMSA_id:066719 AF325137 Vibrio sp. A7 prokMSA_id:056720 AF325142 Vibrio sp. B30 prokMSA_id:024196 AF333089 Vibrio sp. A5 prokMSA_id:068305 AF361662 clone MN12BT3-28 prokMSA_id:051946 AF366006 Marine gamma LHAT9 prokMSA_id:040935 AF366008 Marine gamma AF1 prokMSA_id:051576 AF366010 Marine gamma JSL61 prokMSA_id:023278 AF366012 Marine gamma LHAT4 prokMSA_id:025654 AF366015 Marine gamma SB10 prokMSA_id:030941 AF366016 Marine gamma SB13 prokMSA_id:045348 AF366017 Marine gamma SB16 prokMSA_id:031974 AF366018 Marine gamma SB3 prokMSA_id:048439 AF366019 Marine gamma SB5 prokMSA_id:028299 AF366020 Marine gamma SB7 prokMSA_id:036514 AF366022 Marine gamma SWAT3 prokMSA_id:047238 AF366023 Marine gamma SWAT8 prokMSA_id:038987 AF366035 Marine gamma S5 prokMSA_id:040347 AF465372 Vibrio sp. UST991130-016 prokMSA_id:093949 AF493806 Vibrio aestuarianus strain 5.122 prokMSA_id:045383 AJ002568 Marine isolate DPT2.1 prokMSA_id:009267 AJ007045 Vibrio sp. str. VB. prokMSA_id:009269 AJ132986 Vibrio sp. str. A515. prokMSA_id:009270 AJ132987 Vibrio sp. str. A053. prokMSA_id:009256 AJ132988 Vibrio sp. str. VS6. prokMSA_id:061887 AJ244755 Vibrio sp. V4.BP.01 prokMSA_id:073179 AJ316173 Vibrio sp. R-15032 strain R-15032 prokMSA_id:055514 AJ316174 Vibrio sp. LMG 19995 strain LMG 19995 prokMSA_id:074181 AJ316196 Vibrio sp. R-14789 strain R-14789 prokMSA_id:070143 AJ316197 Vibrio sp. R-14805 strain R-14805 prokMSA_id:073252 AJ316198 Vibrio sp. LMG 13219 strain LMG 13219 prokMSA_id:032893 AJ318954 Vibrio splendidus strain AE1-26 prokMSA_id:045112 AJ391180 Vibrio sp. AS-18 prokMSA_id:018495 AJ414114 Vibrio splendidus strain AF2-03 prokMSA_id:071432 AJ414115 Vibrio splendidus strain AF5-18 prokMSA_id:027237 AJ414116 Vibrio splendidus strain AF2-19 prokMSA_id:018664 AJ414117 Vibrio splendidus strain MF1-11 prokMSA_id:041348 AJ414118 Vibrio splendidus strain MA1-03 prokMSA_id:040370 AJ414119 Vibrio splendidus strain MF2-03 prokMSA_id:072102 AJ414120 Vibrio splendidus strain MA1-09 prokMSA_id:042013 AJ414121 Vibrio splendidus strain OFC1-22 prokMSA_id:070368 AJ414122 Vibrio splendidus strain OFC1-17 prokMSA_id:050099 AJ414123 Vibrio splendidus strain AF2-14 prokMSA_id:073035 AJ414124 Vibrio splendidus strain MF2-11 prokMSA_id:040907 AJ414125 Vibrio sp. TG4-07 strain TG4-07 prokMSA_id:073421 AJ490153 Vibrio kanaloae strain LMG 21522 prokMSA_id:074337 AJ490154 Vibrio kanaloae strain LMG 21523 prokMSA_id:071265 AJ490155 Vibrio pomeroyi strain LMG 21351 prokMSA_id:073280 AJ490156 Vibrio pomeroyi strain LMG 21352 prokMSA_id:034070 AY038377 clone CD3A9 prokMSA_id:038304 AY077646 gamma clone FD2F prokMSA_id:067347 AY094973 Marine SIMO IS-S75-235 prokMSA_id:066607 AY095371 Marine SIMO IS-S75-240 prokMSA_id:066603 AY095478 Marine SIMO IS-S75-245 prokMSA_id:065169 AY095593 gamma PPO-16 prokMSA_id:069879 AY125903 Vibrio sp. C4a prokMSA_id:060712 AY125904 Vibrio sp. C4b prokMSA_id:069858 AY125905 Vibrio sp. C6a prokMSA_id:071180 AY125906 Vibrio sp. C6b prokMSA_id:074999 AY161308 Vibrio sp. UST001026-0032 prokMSA_id:092013 AY266434 Marine SIMO-1592 prokMSA_id:094978 AY321535 Marine 13721 prokMSA_id:096318 AY391669 soil clone M53 prokMSA_id:096264 AY391678 soil clone M62 prokMSA_id:098632 AY391693 soil clone M77 prokMSA_id:025075 U64007 Vibrio sp. SCB30 prokMSA_id:046288 U64024 Vibrio sp. prokMSA_id:009251 X71820 Listonella anguillarum HI 11446. prokMSA_id:009252 X71821 Listonella anguillarum HI 11431. prokMSA_id:009253 X71828 Listonella anguillarum HI 11342. prokMSA_id:009254 X74724 Vibrio splendidus CIP 102893 . prokMSA_id:050715 Y18236 Vibrio cf. splendidus strain CH-B105 prokMSA_id:034141 Y18237 Vibrio cf. splendidus strain CH-B108 prokMSA_id:043348 Y18238 Vibrio cf. splendidus strain CH-B125 prokMSA_id:009273 Z77352 str. 1-140 C1. prokMSA_id:009257 Z77359 str. 1-140 C18. prokMSA_id:009274 Z77370 str. 1-140 C3. prokMSA_id:009258 Z77374 str. 1-140 C33. prokMSA_id:009259 Z77375 str. 1-140 C34. prokMSA_id:009275 Z77383 str. 1-140 C44. prokMSA_id:009260 Z77386 str. 1-140 C5. prokMSA_id:009276 Z77398 str. 1-420 C18. prokMSA_id:009261 Z77453 str. 1-700 C28. prokMSA_id:009262 Z77474 str. 2-100 C1.10. prokMSA_id:009263 Z77492 str. 2-100 C11. prokMSA_id:009264 Z77508 str. 2-100 C7. prokMSA_id:009277 Z77509 str. 2-100 C8. prokMSA_id:009265 Z77510 str. 2-100 C9. prokMSA_id:009266 Z77514 str. 2-400 C2.13. prokMSA_id:030172 Z77559 1-140 C18 prokMSA_id:028154 Z77646 2-400 C2/2.3 prokMSA_id:025185 Z88566 isolate HNS6 2.28.3.23.6 V.PECTENICIDA_SUBGROUP 9 seqs 2.28.3.23.6.001 OTU 2 seqs prokMSA_id:094960 AY374411 Vibrio sp. clone 6-29 prokMSA_id:009283 Y13830 Vibrio pectenicida str. A365 CIP 105190 . 2.28.3.23.6.002 OTU 1 seq prokMSA_id:019523 AF465383 Vibrio sp. UST991130-029 2.28.3.23.6.003 OTU 2 seqs prokMSA_id:043538 AF465371 Vibrio sp. UST991130-014 prokMSA_id:025363 AF465379 Vibrio sp. UST991130-025 2.28.3.23.6.004 OTU 1 seq prokMSA_id:094817 AY374385 Vibrio sp. clone 14-158 2.28.3.23.6.999 poor quality 3 seqs prokMSA_id:021148 AF261050 Vibrio pectenicida prokMSA_id:024086 AF465397 Vibrio sp. UST991130-009 prokMSA_id:009284 D11214 Vibrio ordalii ATCC 35509 . 2.28.3.23.7 V.SCOPHTHALMI_SUBGROUP 10 seqs 2.28.3.23.7.001 OTU 5 seqs prokMSA_id:062643 AB089204 Vibrio sp. No.6 prokMSA_id:093670 AF493805 Vibrio scophthalmi prokMSA_id:069771 AJ316179 Vibrio sp. LMG 20023 strain LMG 20023 prokMSA_id:048368 AJ421445 Vibrio ichthyoenteri strain DSM 14397T prokMSA_id:009286 U46579 Vibrio scophthalmi str. A089 CECT 4638 . 2.28.3.23.7.002 OTU 1 seq prokMSA_id:085946 AY241440 Vibrio sp. UST020129-024 2.28.3.23.7.003 OTU 1 seq prokMSA_id:093717 AF493809 Vibrio ordalii strain 6.30 2.28.3.23.7.999 poor quality 3 seqs prokMSA_id:093961 AF493811 Vibrio ordalii strain 6.48 prokMSA_id:072952 AJ437192 Vibrio ichthyoenteri strain LMG 19664T prokMSA_id:009285 D11211 Vibrio natriegens str. 111 CCM 2575. 2.28.3.23.8 V.AESTUARIANUS_SUBGROUP 5 seqs 2.28.3.23.8.001 OTU 1 seq prokMSA_id:009288 X74689 Vibrio aestuarianus str. OY-0-002 CIP 102971 . 2.28.3.23.8.999 poor quality 4 seqs prokMSA_id:073461 AF018051 Oim31 prokMSA_id:009289 D11191 Vibrio aestuarianus str. OY-0-002 ATCC 35048 . prokMSA_id:009287 NONE Vibrio aestuarianus str. OY-0-002 ATCC 35048 . prokMSA_id:042299 Z77627 2-400 C2.19 2.28.3.23.9 V.CHOLERAE_SUBGROUP 48 seqs 2.28.3.23.9.001 OTU 17 seqs prokMSA_id:093686 AF493802 Vibrio sp. KB81 prokMSA_id:098157 AP005330 Vibrio vulnificus YJ016 chromosome I complete genome section 1/14 prokMSA_id:098303 AP005332 Vibrio vulnificus YJ016 chromosome I complete genome section 3/14 prokMSA_id:098140 AP005341 Vibrio vulnificus YJ016 chromosome I complete genome section 12/14 prokMSA_id:097668 AP005342 Vibrio vulnificus YJ016 chromosome I complete genome section 13/14 prokMSA_id:097943 AP005343 Vibrio vulnificus YJ016 chromosome I complete genome section 14/14 prokMSA_id:098177 AP005345 Vibrio vulnificus YJ016 chromosome II complete genome section 2/8 prokMSA_id:091331 AY345418 K2-38 prokMSA_id:091284 AY345446 KA62 prokMSA_id:075675 NC_004459 Vibrio vulnificus CMCP6 chromosome I complete prokMSA_id:096957 NC_005139 Vibrio vulnificus YJ016 chromosome I complete prokMSA_id:098036 NC_005140 Vibrio vulnificus YJ016 chromosome II complete prokMSA_id:009303 X56582 Vibrio vulnificus ATCC 27562 . prokMSA_id:009292 X74715 Vibrio navarrensis CIP 103381 . prokMSA_id:009300 X74726 Vibrio vulnificus CIP 75.04 . prokMSA_id:009311 X76333 Vibrio vulnificus ATCC 27562 . prokMSA_id:009290 X76334 Vibrio vulnificus str. C7184. 2.28.3.23.9.002 OTU 7 seqs prokMSA_id:059176 AY136100 Vibrio sp. KIN197 prokMSA_id:053406 NC_002505 Vibrio cholerae chromosome I complete chromosome prokMSA_id:009301 X74694 Vibrio cholerae str. 1094 CIP 62.13 . prokMSA_id:009308 X74695 Vibrio cholerae str. 1062 INSERM U303. prokMSA_id:009306 X74713 Vibrio mimicus CIP 101888 . prokMSA_id:009295 X76337 Vibrio cholerae CECT 514 . prokMSA_id:009299 Z21856 Vibrio cholerae str. 1094 ATCC 14035 . 2.28.3.23.9.003 OTU 2 seqs prokMSA_id:027463 AF195479 Vibrio sp. kba12 prokMSA_id:073319 AJ316167 Vibrio sp. LMG 10953 strain LMG 10953 2.28.3.23.9.004 OTU 1 seq prokMSA_id:050329 AJ296159 marine PP-203 2.28.3.23.9.005 OTU 1 seq prokMSA_id:091378 AY345423 K23 2.28.3.23.9.006 OTU 1 seq prokMSA_id:093965 AJ580582 Vibrio sp. CH-291 2.28.3.23.9.999 poor quality 19 seqs prokMSA_id:070017 AF262744 Endocytic Noc4 prokMSA_id:073116 AJ316175 Vibrio sp. R-15024 strain R-15024 prokMSA_id:073977 AJ316182 Vibrio sp. R-15063 strain R-15063 prokMSA_id:073806 AJ316189 Vibrio sp. LMG 19996 strain LMG 19996 prokMSA_id:072410 AJ316190 Vibrio sp. R-14850 strain R-14850 prokMSA_id:083646 AY254043 Vibrio hispanicus strain LMG 13213 3' end prokMSA_id:009297 D11195 Vibrio cholerae str. IID936. prokMSA_id:009296 D11196 Vibrio cholerae str. IID467. prokMSA_id:009291 D11197 Vibrio cholerae str. IID1655. prokMSA_id:009307 D11198 Vibrio cholerae str. IID935. prokMSA_id:009298 D11199 Vibrio cholerae str. IID934. prokMSA_id:009302 D11210 Vibrio mimicus ATCC 33655 . prokMSA_id:009293 L05178 Vibrio cholerae str. 726. prokMSA_id:009305 U10862 Vibrio vulnificus ATCC 27562 . prokMSA_id:009304 U10953 Vibrio cholerae ATCC 35971. prokMSA_id:009312 U10955 Vibrio cholerae. prokMSA_id:009294 X74696 Vibrio cholerae str. non O_1 Nanking 32/123 CIP 63.40. prokMSA_id:009309 X74697 Vibrio cholerae str. non O_1 El Tor 34-D23 CIP 63.41. prokMSA_id:009310 X74727 Vibrio vulnificus ATCC 29307. 2.28.3.23.10 V.DIAZOTROPHICUS_SUBGROUP 26 seqs 2.28.3.23.10.001 OTU 2 seqs prokMSA_id:083635 AJ554204 Vibrio cholerae strain CECT 653 prokMSA_id:009322 X74712 Vibrio metschnikovii CIP 69.14 . 2.28.3.23.10.002 OTU 1 seq prokMSA_id:009321 X74711 Vibrio metschnikovii str. MV 2484 NCTC 11170. 2.28.3.23.10.003 OTU 1 seq prokMSA_id:009319 AF124055 Vibrio aerogenes str. FG1 ATCC 700797. 2.28.3.23.10.004 OTU 1 seq prokMSA_id:009318 AF159667 clone HstpL17. 2.28.3.23.10.005 OTU 1 seq prokMSA_id:009315 X74701 Vibrio diazotrophicus str. NS CIP 103191 . 2.28.3.23.10.006 OTU 1 seq prokMSA_id:009313 X74698 Vibrio cincinnatiensis ATCC 35912 . 2.28.3.23.10.007 OTU 1 seq prokMSA_id:059155 AY136111 Vibrio sp. MED73 2.28.3.23.10.008 OTU 1 seq prokMSA_id:047306 AF462458 Vibrio ruber 2.28.3.23.10.009 OTU 1 seq prokMSA_id:094311 AY374404 Vibrio sp. clone 6-219 2.28.3.23.10.010 OTU 1 seq prokMSA_id:094663 AY374379 Vibrio sp. clone 14-123 2.28.3.23.10.011 OTU 1 seq prokMSA_id:094975 AY374394 Vibrio sp. clone 2-229 2.28.3.23.10.012 OTU 1 seq prokMSA_id:095106 AY374384 Vibrio sp. clone 14-154 2.28.3.23.10.013 OTU 1 seq prokMSA_id:095163 AY374380 Vibrio sp. clone 14-124 2.28.3.23.10.999 poor quality 12 seqs prokMSA_id:048598 AF018050 Oim25 prokMSA_id:050276 AF055810 Marine 'Bird Shoal sa2' prokMSA_id:031603 AF055819 Marine 'Bird Shoal sa3' prokMSA_id:040760 AF055823 Marine 'Sippewissett 24' prokMSA_id:024710 AF055824 Marine 'Sippewissett 2' prokMSA_id:072041 AJ316180 Vibrio sp. LMG 4426 strain LMG 4426 prokMSA_id:063988 AJ491832 Vibrio metschnikovii strain B24 prokMSA_id:009316 D11201 Vibrio diazotrophicus str. NS ATCC 33466 . prokMSA_id:009320 D11204 Vibrio gazogenes str. PB 1 ATCC 29988 . prokMSA_id:009323 D11209 Vibrio metschnikovii str. M 34 NCTC 8443 . prokMSA_id:009314 X56577 Vibrio diazotrophicus str. NS ATCC 33466 . prokMSA_id:009317 X74705 Vibrio gazogenes str. PB 1 CIP 103173 . 2.28.3.23.11 LSN.ANGUILLARUM_SUBGROUP 42 seqs 2.28.3.23.11.001 OTU 5 seqs prokMSA_id:040425 AY035897 Listonella anguillarum prokMSA_id:070635 AY069970 Listonella anguillarum serovar O1 prokMSA_id:074258 AY069971 Listonella anguillarum serovar O2a prokMSA_id:094761 AY374408 Vibrio sp. clone 6-268 prokMSA_id:009345 X16895 Listonella anguillarum str. C510 ATCC 19264 . 2.28.3.23.11.002 OTU 1 seq prokMSA_id:009336 X71835 Photobacterium damsela subsp. damsela NCIMB 2184. 2.28.3.23.11.003 OTU 1 seq prokMSA_id:009330 X71812 Vibrio ordalii str. DF3K NCIMB 2167. 2.28.3.23.11.999 poor quality 35 seqs prokMSA_id:045537 AB064347 Vibrio sp. AER No.10 prokMSA_id:036089 AB064348 Vibrio sp. AER No.126 prokMSA_id:032795 AB064349 Vibrio sp. AER No.14 prokMSA_id:022081 AB064350 Vibrio sp. AER No.16 prokMSA_id:041995 AB064351 Vibrio sp. AER No.174 prokMSA_id:019686 AB064352 Vibrio sp. AER No.175 prokMSA_id:020353 AB064353 Vibrio sp. AER No.178 prokMSA_id:030231 AB064354 Vibrio sp. AER No.229 prokMSA_id:052021 AB064355 Vibrio sp. AER No.252 prokMSA_id:017257 AB064356 Vibrio sp. AER No.9 prokMSA_id:034765 AF261052 Vibrio ordalii prokMSA_id:072434 AJ311967 gamma strain OS-188 prokMSA_id:071226 AJ311968 gamma strain OS-216 prokMSA_id:060036 AJ316188 Vibrio sp. R-15101 strain R-15101 prokMSA_id:009329 D11178 Listonella anguillarum IFO 13266. prokMSA_id:009334 X70641 Vibrio ordalii str. DF3K ATCC 33509 . prokMSA_id:009339 X71814 Listonella anguillarum str. 775. prokMSA_id:009328 X71815 Listonella anguillarum HI 7400. prokMSA_id:009338 X71816 Listonella anguillarum HI 4791. prokMSA_id:009332 X71817 Listonella anguillarum str. 1247/1 ATCC 43313. prokMSA_id:009347 X71818 Listonella anguillarum NCIMB 2130. prokMSA_id:009327 X71819 Listonella anguillarum NCIMB 2129. prokMSA_id:009326 X71822 Listonella anguillarum HI 11423. prokMSA_id:009346 X71823 Listonella anguillarum HI 11421. prokMSA_id:009337 X71824 Listonella anguillarum HI 11351. prokMSA_id:009331 X71825 Listonella anguillarum HI 11349. prokMSA_id:009324 X71826 Listonella anguillarum HI 11345. prokMSA_id:009340 X71827 Listonella anguillarum HI 11343. prokMSA_id:009333 X71829 Listonella anguillarum HI 11341. prokMSA_id:009341 X71830 Listonella anguillarum HI 11340. prokMSA_id:009342 X71831 Listonella anguillarum HI 11336. prokMSA_id:009325 X71832 Listonella anguillarum HI 11331. prokMSA_id:009343 X71833 Listonella anguillarum HI 10424. prokMSA_id:009344 X74718 Vibrio ordalii str. DF3K CIP 103205 . prokMSA_id:009335 Z77577 str. 1-700 C10. 2.28.3.24 AEROMONAS_GROUP 382 seqs 2.28.3.24.1 RUM.AMYLOPHILUS_SUBGROUP 58 seqs 2.28.3.24.1.001 OTU 2 seqs prokMSA_id:088096 AB113710 clone:OAB23 prokMSA_id:009357 Y17600 Succinivibrio dextrinosolvens DSM 3072. 2.28.3.24.1.002 OTU 1 seq prokMSA_id:009356 U96412 Anaerobiospirillum succiniciproducens str. S411 ATCC 29305 . 2.28.3.24.1.003 OTU 2 seqs prokMSA_id:009354 AF018457 clone 12-11. prokMSA_id:009355 AF018464 clone 12-35. 2.28.3.24.1.004 OTU 2 seqs prokMSA_id:009352 AF018448 clone JW27. prokMSA_id:009353 AF018451 clone JW34. 2.28.3.24.1.005 OTU 1 seq prokMSA_id:009351 Y17599 Succinimonas amylolytica DSM 2873. 2.28.3.24.1.006 OTU 3 seqs prokMSA_id:009350 AB004908 Ruminobacter amylophilus str. Bovine rumen NIAH 3. prokMSA_id:009348 X06765 Ruminobacter amylophilus ATCC 29744 . prokMSA_id:009349 Y15992 Ruminobacter amylophilus DSM 1361 . 2.28.3.24.1.007 OTU 1 seq prokMSA_id:029865 AJ420985 Anaerobiospirillum thomasii strain DSM 11806T 2.28.3.24.1.008 OTU 1 seq prokMSA_id:058603 AB080203 rumen clone:RF1 2.28.3.24.1.009 OTU 1 seq prokMSA_id:058602 AB080204 rumen clone:RF2 2.28.3.24.1.010 OTU 1 seq prokMSA_id:058601 AB080205 rumen clone:RF3 2.28.3.24.1.011 OTU 1 seq prokMSA_id:058599 AB080206 rumen clone:RF4 2.28.3.24.1.012 OTU 1 seq prokMSA_id:058597 AB080209 rumen clone:RF8 2.28.3.24.1.013 OTU 1 seq prokMSA_id:060771 AF497809 Anaerobiospirillum sp. 3J102 2.28.3.24.1.014 OTU 1 seq prokMSA_id:060774 AF497808 Anaerobiospirillum sp. B0101 2.28.3.24.1.015 OTU 5 seqs prokMSA_id:090423 AY315250 rumen clone JRCH47 prokMSA_id:089059 AY315310 rumen clone JRCJ11 prokMSA_id:088722 AY315349 rumen clone JRCK14 prokMSA_id:090304 AY315357 rumen clone JRCK24 prokMSA_id:088243 AY315370 rumen clone JRCK43 2.28.3.24.1.016 OTU 1 seq prokMSA_id:088643 AY315314 rumen clone JRCJ15 2.28.3.24.1.017 OTU 1 seq prokMSA_id:089673 AY315335 rumen clone JRCJ64 2.28.3.24.1.018 OTU 1 seq prokMSA_id:091552 AY345546 H4 2.28.3.24.1.999 poor quality 31 seqs prokMSA_id:064341 AF521036 clone Dpcom31 prokMSA_id:062629 AJ504483 isolate P1CN12 prokMSA_id:082112 AY187398 clone SA14 prokMSA_id:081673 AY187448 clone SB61 prokMSA_id:082253 AY187476 clone SC5 prokMSA_id:082254 AY193935 clone SB96 prokMSA_id:081652 AY193948 clone SB131 prokMSA_id:082132 AY193957 clone SC48 prokMSA_id:088416 AY315199 rumen clone JRCG05 prokMSA_id:088112 AY315202 rumen clone JRCG12 prokMSA_id:090446 AY315208 rumen clone JRCG23 prokMSA_id:089014 AY315261 rumen clone JRCI13 prokMSA_id:090136 AY315270 rumen clone JRCI22 prokMSA_id:089085 AY315276 rumen clone JRCI30 prokMSA_id:089982 AY315282 rumen clone JRCI38 prokMSA_id:090754 AY315285 rumen clone JRCI44 prokMSA_id:089399 AY315288 rumen clone JRCI48 prokMSA_id:089225 AY315289 rumen clone JRCI50 prokMSA_id:088555 AY315312 rumen clone JRCJ13 prokMSA_id:088673 AY315325 rumen clone JRCJ31 prokMSA_id:088302 AY315330 rumen clone JRCJ36 prokMSA_id:090428 AY315334 rumen clone JRCJ62 prokMSA_id:090577 AY315353 rumen clone JRCK19 prokMSA_id:088592 AY315356 rumen clone JRCK23 prokMSA_id:088389 AY315366 rumen clone JRCK39 prokMSA_id:090355 AY315367 rumen clone JRCK40 prokMSA_id:088411 AY315368 rumen clone JRCK41 prokMSA_id:088089 AY315376 rumen clone JRCK52 prokMSA_id:089810 AY315378 rumen clone JRCK55 prokMSA_id:009358 X92889 Tolumonas auensis str. TA 4 DSM 9187 . prokMSA_id:033093 Z95609 2.28.3.24.2 ARM.HYDROPHILA_SUBGROUP 324 seqs 2.28.3.24.2.006 OTU 1 seq prokMSA_id:009448 AF018462 clone 12-18. 2.28.3.24.2.008 OTU 182 seqs prokMSA_id:009445 AB027005 Aeromonas salmonicida str. NI-441 T83-k-sw-2 IS-205. prokMSA_id:009446 AB027006 Aeromonas salmonicida str. GU-187 IB-277. prokMSA_id:051222 AB027541 Aeromonas salmonicida salmonicida prokMSA_id:032945 AB027542 Aeromonas salmonicida masoucida prokMSA_id:040978 AB027543 Aeromonas salmonicida achromogenes prokMSA_id:034597 AB027544 Aeromonas salmonicida smithia prokMSA_id:034796 AB027545 Aeromonas salmonicida atypical prokMSA_id:036209 AB027546 Aeromonas salmonicida atypical prokMSA_id:009439 AB028881 Aeromonas guangheii str. 95-173. prokMSA_id:009365 AB032088 Aeromonas hydrophila str. Ef1L1. prokMSA_id:029107 AB034759 Aeromonas bestiarum prokMSA_id:037909 AB034760 Aeromonas caviae prokMSA_id:074870 AB034761 Aeromonas hydrophila prokMSA_id:035873 AB034762 Aeromonas hydrophila prokMSA_id:043157 AB034763 Aeromonas sp. prokMSA_id:078159 AB074594 gamma clone:APe2_12 prokMSA_id:032679 AB074707 Gamma S-A1-1 prokMSA_id:020270 AB076858 Aeromonas sp. PG3-3 prokMSA_id:039643 AB076859 Aeromonas sp. PG4-1 prokMSA_id:082433 AB105443 clone:A-9 prokMSA_id:009416 AF005256 Aeromonas MR-64 str. MR-64. prokMSA_id:009427 AF037271 Aeromonas RC50 str. RC50; FC643. prokMSA_id:009411 AF063003 Aeromonas RC278 str. RC278MM85. prokMSA_id:009373 AF099021 Aeromonas hydrophila str. M29. prokMSA_id:009374 AF099022 Aeromonas hydrophila str. T20. prokMSA_id:009440 AF099023 Aeromonas veronii str. M16. prokMSA_id:009441 AF099024 Aeromonas veronii str. B1. prokMSA_id:009412 AF099025 Aeromonas jandaei str. M34. prokMSA_id:009413 AF099026 Aeromonas jandaei str. B10. prokMSA_id:009424 AF099027 Aeromonas T8 str. T8. prokMSA_id:044568 AF108136 Aeromonas salmonicida prokMSA_id:009398 AF134065 Aeromonas salmonicida subsp. pectinolytica str. 34mel. prokMSA_id:042473 AF140018 Aeromonas sp. ML-S4 prokMSA_id:046545 AF150688 Elbe River snow isolate Iso10neu prokMSA_id:047441 AF150699 Elbe River snow isolate Iso19neu prokMSA_id:038042 AF150712 Elbe River snow isolate Iso7neu1 prokMSA_id:009454 AF157690 Aeromonas media str. 86352. prokMSA_id:009385 AF170914 Aeromonas culicicola strain MTCC 3249 prokMSA_id:036658 AF189694 Aeromonas sp. BC16 prokMSA_id:022088 AF200329 Aeromonas salmonicida prokMSA_id:040526 AF324530 gamma BioIuz K30 prokMSA_id:046908 AF324531 gamma BioIuz K33 prokMSA_id:046643 AF324532 gamma BioIuz K1 prokMSA_id:052200 AF324533 gamma BioIuz K39 prokMSA_id:026539 AF324534 gamma BioIuz K40 prokMSA_id:030233 AF324535 gamma BioIuz K41 prokMSA_id:021594 AF324536 gamma BioIuz K43 prokMSA_id:051245 AF410780 Aeromonas sp. NLEP A-1607 prokMSA_id:049072 AF410949 Aeromonas veronii prokMSA_id:058415 AF418209 Aeromonas veronii clone 1 prokMSA_id:058414 AF418210 Aeromonas veronii clone 2 prokMSA_id:055879 AF418211 Aeromonas veronii clone 3 prokMSA_id:058413 AF418212 Aeromonas veronii clone 4 prokMSA_id:058410 AF418213 Aeromonas veronii clone 5 prokMSA_id:056067 AF418214 Aeromonas media isolate 1 prokMSA_id:059123 AF418215 Aeromonas media isolate 2 prokMSA_id:059119 AF418216 Aeromonas media isolate 3 prokMSA_id:059115 AF418217 Aeromonas media isolate 4 prokMSA_id:059117 AF418218 Aeromonas media isolate 5 prokMSA_id:059116 AF418219 Aeromonas media isolate 6 prokMSA_id:025552 AF427150 Aeromonas sp. PAR2A prokMSA_id:019693 AF427151 Aeromonas sp. PAR2B prokMSA_id:053736 AF427152 Aeromonas sp. PAR3 prokMSA_id:066817 AF430120 Aeromonas sp. VKM B-2261 prokMSA_id:028522 AF468055 Aeromonas hydrophila strain 45/90 prokMSA_id:042667 AF468056 Aeromonas hydrophila strain 4AK4 prokMSA_id:045890 AF472495 Aeromonas punctata isolate S1A19 prokMSA_id:032917 AF472496 Aeromonas punctata isolate S4A16 prokMSA_id:054346 AF472506 Aeromonas popoffii isolate S1N17 prokMSA_id:056271 AF513938 Aeromonadaceae clone PH-B39N prokMSA_id:061823 AF529341 gamma clone CLi66 prokMSA_id:061814 AF529348 gamma clone CLs70 prokMSA_id:009359 AJ009859 Aeromonas salmonicida subsp. smithia CCM 4103 . prokMSA_id:009447 AJ009860 Haemophilus piscium NCIMB 1952. prokMSA_id:009364 AJ133636 Aeromonas Au str. Au. prokMSA_id:009388 AJ223179 Aeromonas F498B str. F498B. prokMSA_id:009389 AJ223180 Aeromonas popoffii LMG 17542. prokMSA_id:009390 AJ223181 Aeromonas popoffii LMG 17543. prokMSA_id:009391 AJ223182 Aeromonas F479E str. F479E. prokMSA_id:009387 AJ224308 Aeromonas popoffii LMG 17541 . prokMSA_id:009396 AJ224309 Aeromonas encheleia str. A 1881. prokMSA_id:066205 AJ278105 Aeromonas sp. strain RR8 prokMSA_id:027321 AJ291837 Aeromonas sp. IrT-R5M2-55 prokMSA_id:034508 AJ295654 KF/GS-JG36-20 prokMSA_id:018994 AJ308468 Aeromonas sp. 54 isolate 54 prokMSA_id:036289 AJ416907 Aeromonas hydrophila strain 0009 831 prokMSA_id:067010 AJ458402 Aeromonas sp. F518 strain F518 prokMSA_id:067007 AJ458403 Aeromonas sp. Aer58 strain Aer58 prokMSA_id:067006 AJ458404 Aeromonas sp. F666D strain F666D prokMSA_id:067005 AJ458405 Aeromonas sp. LMG 13061 strain LMG 13061 prokMSA_id:067004 AJ458406 Aeromonas sp. LMG 13691 strain LMG 13691 prokMSA_id:067003 AJ458407 Aeromonas sp. LMG 16179 strain LMG 16179 prokMSA_id:067017 AJ458408 Aeromonas encheleia strain LMG 16328 prokMSA_id:067013 AJ458409 Aeromonas encheleia strain LMG 16331 prokMSA_id:067002 AJ458410 Aeromonas sp. LMG 16405 strain LMG 16405 prokMSA_id:067014 AJ458411 Aeromonas eucrenophila strain LMG 17059 prokMSA_id:067001 AJ458412 Aeromonas sp. LMG 17065 . strain LMG 17065 prokMSA_id:067000 AJ458413 Aeromonas sp. LMG 13062 strain LMG 13062 prokMSA_id:056530 AJ458414 Aeromonas encheleia strain E193 prokMSA_id:067012 AJ458415 Aeromonas encheleia strain E194 prokMSA_id:067011 AJ458416 Aeromonas encheleia strain E195 prokMSA_id:056241 AJ491712 Aeromonas veronii strain P8 prokMSA_id:064284 AJ491713 Aeromonas veronii strain P9 prokMSA_id:064283 AJ491714 Aeromonas veronii strain P11 prokMSA_id:064282 AJ491716 Aeromonas veronii strain P13 prokMSA_id:059291 AJ508765 Aeromonas hydrophila subsp. dhakensis strain LMG 19562T prokMSA_id:069929 AJ508766 Aeromonas hydrophila subsp. ranae strain LMG 19707T prokMSA_id:077639 AJ514435 clone ASG7 prokMSA_id:075263 AJ518825 Aeromonas hydrophila isolate P14 prokMSA_id:078527 AJ536820 Aeromonas simiae strain IBS S6652 prokMSA_id:079043 AJ536821 Aeromonas simiae strain IBS S6874T prokMSA_id:096782 AJ585221 Aeromonas salmonicida prokMSA_id:058983 AY130991 Aeromonas culicicola strain MTCC 3249 substrain SH prokMSA_id:058982 AY130992 Aeromonas culicicola strain MTCC 3249 substrain SLH prokMSA_id:060890 AY135887 clone SG1-129 prokMSA_id:059192 AY136078 Aeromonas salmonicida prokMSA_id:059186 AY136084 Aeromonas veronii prokMSA_id:075799 AY154492 earthworm intestine clone wi78 prokMSA_id:076937 AY154529 earthworm intestine clone ew67 prokMSA_id:076078 AY154534 earthworm intestine clone lw03 prokMSA_id:077056 AY154546 earthworm intestine clone lw33 prokMSA_id:076469 AY154554 earthworm intestine clone lw58 prokMSA_id:075737 AY154562 earthworm intestine clone lw68 prokMSA_id:076081 AY154563 earthworm intestine clone lw69 prokMSA_id:075995 AY154564 earthworm intestine clone lw70 prokMSA_id:076384 AY154631 earthworm cast clone c281 prokMSA_id:075926 AY154639 earthworm cast clone c300 prokMSA_id:074912 AY168725 clone HC-37P prokMSA_id:079149 AY187888 clone G5 prokMSA_id:079385 AY187889 clone G7 prokMSA_id:079262 AY187898 clone I19 prokMSA_id:079416 AY187901 clone L4 prokMSA_id:079473 AY187910 clone Q2 prokMSA_id:079517 AY187913 clone T8 prokMSA_id:079092 AY187917 clone W9 prokMSA_id:083644 AY245179 Vibrio parahaemolyticus isolate 5 prokMSA_id:083778 AY245192 Vibrio parahaemolyticus isolate 4a prokMSA_id:088554 AY297756 Aeromonas sp. Ema prokMSA_id:090710 AY308839 Aeromonas sp. 'starch-degrading 1' prokMSA_id:091607 AY345394 G3_GreenLake prokMSA_id:091602 AY345498 clone W4-B32 prokMSA_id:091964 AY345531 W20 prokMSA_id:097828 AY379975 Aeromonas sp. AHL 3 prokMSA_id:009361 S39232 Aeromonas allosaccharophila CECT 4199 . prokMSA_id:009399 S42871 Aeromonas trota ATCC 49657 . prokMSA_id:009426 U88654 Aeromonas 'CDC 437-84' CDC 437-84. prokMSA_id:009382 U88655 Aeromonas 'CDC 862-83' CDC 862-83. prokMSA_id:009422 U88656 Aeromonas 'CDC 9013-89' CDC 9013-89. prokMSA_id:009418 U88657 Aeromonas 'CDC 9017-79' CDC 9017-79. prokMSA_id:009362 U88658 Aeromonas 'CDC 715-84' CDC 715-84. prokMSA_id:009438 U88659 Aeromonas 'CDC 964-83' CDC 964-83. prokMSA_id:009419 U88660 Aeromonas 'CDC 2452-91' CDC 2452-91. prokMSA_id:009407 U88661 Aeromonas 'CDC 859-83' CDC 859-83. prokMSA_id:009410 U88662 Aeromonas jandaei CDC 787-80 . prokMSA_id:009450 U88663 Aeromonas 'CDC 2478-85' CDC 2478-85. prokMSA_id:009372 X60404 Aeromonas hydrophila subsp. hydrophila ATCC 7966 . prokMSA_id:009375 X60405 Aeromonas salmonicida subsp. salmonicida NCIMB 1102 . prokMSA_id:009376 X60406 Aeromonas salmonicida subsp. salmonicida NCIMB 1102 . prokMSA_id:009444 X60407 Aeromonas salmonicida subsp. achromogenes NCIMB 1110 . prokMSA_id:009417 X60408 Aeromonas caviae NCIMB 13016. prokMSA_id:009421 X60409 Aeromonas caviae ATCC 15467. prokMSA_id:009369 X60410 Aeromonas media ATCC 33907 . prokMSA_id:009406 X60411 Aeromonas eucrenophila NCIMB 74 . prokMSA_id:009415 X60412 Aeromonas sobria NCIMB 12065 . prokMSA_id:009400 X60413 Aeromonas jandaei ATCC 49568 . prokMSA_id:009437 X60414 Aeromonas veronii NCIMB 13015. prokMSA_id:009433 X60415 Aeromonas trota ATCC 49657 . prokMSA_id:009449 X60416 Aeromonas schubertii DSM 4882 . prokMSA_id:009431 X60417 Aeromonas sp. ATCC 35941. prokMSA_id:009386 X71120 Aeromonas ichthiosmia DSM 6393 . prokMSA_id:009452 X74674 Aeromonas caviae CIP 76.16 . prokMSA_id:009360 X74675 Aeromonas eucrenophila CIP 76.17 . prokMSA_id:009363 X74676 Aeromonas hydrophila ATCC 35654. prokMSA_id:009381 X74677 Aeromonas hydrophila subsp. hydrophila CIP 76.14 . prokMSA_id:009384 X74678 Aeromonas jandaei ATCC 49568 . prokMSA_id:009453 X74679 Aeromonas media ATCC 33907 . prokMSA_id:009420 X74680 Aeromonas salmonicida subsp. masoucida str. 1-1-1 CIP 103210 . prokMSA_id:009395 X74681 Aeromonas salmonicida subsp. salmonicida CIP 103209 . prokMSA_id:009367 X74682 Aeromonas schubertii ATCC 43700 . prokMSA_id:009434 X74683 Aeromonas sobria CIP 74.33 . prokMSA_id:009425 X74684 Aeromonas veronii ATCC 35624 . prokMSA_id:009404 X87271 Aeromonas hydrophila. 2.28.3.24.2.009 OTU 1 seq prokMSA_id:009405 AF118388 Aeromonas hydrophila str. LB5. 2.28.3.24.2.010 OTU 1 seq prokMSA_id:009403 AF118387 Aeromonas jandaei str. ST19. 2.28.3.24.2.011 OTU 3 seqs prokMSA_id:009401 AB019390 str. MBIC1298 ATCC 27123. prokMSA_id:073145 AF094724 Pseudomonas doudoroffii prokMSA_id:035016 AF168367 Oceanomonas baumannii 2.28.3.24.2.012 OTU 1 seq prokMSA_id:022488 AF451252 Aeromonas sp. A33 2.28.3.24.2.013 OTU 1 seq prokMSA_id:047170 AJ232859 clone LRS19 2.28.3.24.2.014 OTU 1 seq prokMSA_id:067247 AF495441 clone F13.48 2.28.3.24.2.015 OTU 1 seq prokMSA_id:067600 AF493064 gamma clone GOBB3-CL293 2.28.3.24.2.016 OTU 1 seq prokMSA_id:069042 AJ296565 GR-WP33-14 clone GR-WP33-14 2.28.3.24.2.017 OTU 1 seq prokMSA_id:077650 AJ514437 clone ASG9 2.28.3.24.2.018 OTU 2 seqs prokMSA_id:082407 AB105442 clone:A-8 prokMSA_id:081058 AY187521 clone SD77 2.28.3.24.2.019 OTU 1 seq prokMSA_id:084842 AJ550470 Oceanisphaera litoralis strain DSM 15406 2.28.3.24.2.020 OTU 3 seqs prokMSA_id:088844 AY315246 rumen clone JRCH37 prokMSA_id:089249 AY315305 rumen clone JRCJ06 prokMSA_id:089765 AY315308 rumen clone JRCJ09 2.28.3.24.2.999 poor quality 124 seqs prokMSA_id:009402 AB021371 str. MBIC1298 ATCC 27123. prokMSA_id:043294 AB032089 Aeromonas hydrophila strain:Ef5L1 prokMSA_id:043423 AB064357 Aeromonas sp. AER No.1 prokMSA_id:027729 AB064358 Aeromonas sp. AER No.102 prokMSA_id:025871 AB064359 Aeromonas sp. AER No.107 prokMSA_id:039625 AB064360 Aeromonas sp. AER No.201 prokMSA_id:033550 AB064361 Aeromonas sp. AER No.206 prokMSA_id:033591 AB064362 Aeromonas sp. AER No.212 prokMSA_id:023509 AB064363 Aeromonas sp. AER No.22 prokMSA_id:024485 AB064364 Aeromonas sp. AER No.221 prokMSA_id:046981 AB064365 Aeromonas sp. AER No.241 prokMSA_id:043575 AB064366 Aeromonas sp. AER No.5 prokMSA_id:070118 AF018461 rumen 12-17 prokMSA_id:029782 AF079299 Aeromonas veronii strain HM11 prokMSA_id:009428 AF079300 Aeromonas veronii str. HM221. prokMSA_id:009429 AF079301 Aeromonas veronii str. HM231. prokMSA_id:051841 AF102103 cr2512 prokMSA_id:031632 AF102110 3251com prokMSA_id:052893 AF102113 9052COM prokMSA_id:046618 AF102119 9251COM prokMSA_id:041681 AF102127 5735com prokMSA_id:041931 AF106601 Acinetobacter anitratus prokMSA_id:020211 AF106602 Aeromonas hydrophila prokMSA_id:040948 AF143448 Aquatic RUB_GSP_02 prokMSA_id:037033 AF143453 Aquatic RUB_GSP_01 prokMSA_id:031600 AF170282 Aeromonas caviae isolate Musca-A prokMSA_id:025912 AF188303 Aeromonas sp. A381 prokMSA_id:046881 AF210251 Aeromonas caviae strain musca-15 prokMSA_id:046682 AF210252 Aeromonas caviae strain musca-19 prokMSA_id:045518 AF210253 Aeromonas caviae strain musca-20 prokMSA_id:046100 AF210254 Aeromonas caviae strain musca-21 prokMSA_id:016337 AF210255 Aeromonas caviae strain musca-22 prokMSA_id:070833 AF239707 Gamma KT11ds10 prokMSA_id:071861 AF281628 Aeromonas caviae prokMSA_id:031555 AF281629 Aeromonas caviae isolate CO5 prokMSA_id:038395 AF281630 Aeromonas caviae isolate P5 prokMSA_id:038029 AF281631 Aeromonas caviae isolate PG3 prokMSA_id:052440 AF302145 Aeromonas sp. WG99L-1 prokMSA_id:068206 AF365519 clone BM89MF5BE9 prokMSA_id:067977 AF365787 clone BM89PA1BbD12 prokMSA_id:072928 AF365803 clone BM89PA4BbC5 prokMSA_id:040804 AF376320 ckncm087-A32.E7 prokMSA_id:022786 AF428589 clone CRD99-11 prokMSA_id:035180 AF428648 clone CRD99-70 prokMSA_id:019212 AF429254 clone CR99-2-68 prokMSA_id:045729 AF451258 Aeromonas sp. A30 prokMSA_id:052904 AF472489 Aeromonas hydrophila isolate S2M9 prokMSA_id:024683 AF472490 Aeromonas salmonicida isolate S2M19 prokMSA_id:051609 AF472491 Aeromonas hydrophila isolate S4A5 prokMSA_id:050032 AF472492 Aeromonas salmonicida isolate S2M5 prokMSA_id:040675 AF472493 Aeromonas salmonicida isolate S2A32 prokMSA_id:030658 AF472494 Aeromonas salmonicida isolate T5 prokMSA_id:027487 AF472497 Aeromonas media isolate S1M4 prokMSA_id:036341 AF472498 Aeromonas media isolate S3A6 prokMSA_id:023904 AF472499 Aeromonas media isolate S4A17 prokMSA_id:054654 AF472500 Aeromonas sobria isolate S1J6 prokMSA_id:026842 AF472501 Aeromonas sobria isolate S1J10 prokMSA_id:038780 AF472502 Aeromonas sobria isolate S2M10 prokMSA_id:041772 AF472503 Aeromonas veronii isolate S3M31 prokMSA_id:030357 AF472504 Aeromonas veronii isolate S4M13 prokMSA_id:026884 AF472505 Aeromonas popoffii isolate S1N5 prokMSA_id:068779 AF490370 gamma clone AKB11 prokMSA_id:063687 AF522919 clone 1g6 prokMSA_id:069545 AF530922 Gamma sj31 prokMSA_id:075431 AF539665 Aeromonas sp. Ni24 prokMSA_id:075367 AF539680 Aeromonas sp. Ni39 prokMSA_id:075645 AF539686 Aeromonas sp. Ni46 prokMSA_id:059475 AF541928 Aeromonas salmonicida strain MF14 prokMSA_id:059473 AF541929 Aeromonas salmonicida strain MF22 prokMSA_id:073591 AJ311969 gamma strain OS-123A prokMSA_id:077132 AJ318898 Aeromonas hydrophila strain AG18 prokMSA_id:075406 AJ318899 Aeromonas media strain AG26 prokMSA_id:064732 AJ489337 Aeromonas sp. Lgg5.7 strain Lgg5.7 prokMSA_id:055789 AJ489339 Aeromonas sp. Lgg5.9 strain Lgg5.9 prokMSA_id:059288 AJ508690 Aeromonas hydrophila isolate MBRG 4.3 prokMSA_id:059289 AJ508691 Aeromonas caviae isolate MBRG 4.4 prokMSA_id:055705 AJ508692 Aeromonas sp. MBRG 4.2 isolate MBRG 4.2 prokMSA_id:059287 AJ508693 Aeromonas hydrophila isolate MBRG 4.1 prokMSA_id:057255 AJ518226 clone Mul2P2-20 prokMSA_id:086868 AJ564062 Aeromonas sp. LA15-1 prokMSA_id:024321 AY039444 Earthworm cast C9M1 prokMSA_id:061518 AY043700 gamma clone NOS7.149WL prokMSA_id:076894 AY168731 clone HC-7P prokMSA_id:076688 AY168747 clone HC-58 prokMSA_id:076878 AY168748 clone HC-60 prokMSA_id:078741 AY172964 Aeromonas punctata strain BT-3 prokMSA_id:079049 AY172966 Aeromonas sp. BT-28 prokMSA_id:079083 AY172967 Aeromonas punctata strain PM-1 prokMSA_id:078973 AY172968 Aeromonas punctata strain PM-2 prokMSA_id:078786 AY172969 Aeromonas punctata strain PM-5 prokMSA_id:081281 AY187426 clone SA76 prokMSA_id:081858 AY187538 clone SD135 prokMSA_id:093454 AY297782 Aeromonas salmonicida prokMSA_id:089547 AY308842 Aeromonas sp. 'starch-degrading 4' prokMSA_id:090473 AY315218 rumen clone JRCG39 prokMSA_id:090101 AY315301 rumen clone JRCI71 prokMSA_id:009436 D11169 Aeromonas caviae JCM 1060 . prokMSA_id:009451 D11170 Aeromonas caviae IFO 13282. prokMSA_id:009377 D11174 Aeromonas media JCM 2385 . prokMSA_id:009455 D11175 Aeromonas salmonicida IFO 13784. prokMSA_id:009430 D11176 Aeromonas veronii ATCC 35624 . prokMSA_id:009366 L31915 Aeromonas sp. str. 93/1060-1. prokMSA_id:009443 M59148 Aeromonas hydrophila subsp. hydrophila ATCC 7966 . prokMSA_id:009408 NONE Aeromonas sp. CDC 9533-76. prokMSA_id:009368 NONE Aeromonas sp. CDC 9701-84. prokMSA_id:009432 U45673 clone AI289. prokMSA_id:009392 U65963 Aeromonas sp. prokMSA_id:009397 U65967 Aeromonas sp. str. ST9618. prokMSA_id:009442 X71121 Aeromonas enteropelogenes DSM 6394 . prokMSA_id:009378 X71836 Aeromonas salmonicida subsp. salmonicida NCIMB 1102 . prokMSA_id:009409 X84555 str. SBR2011. prokMSA_id:009383 X91292 clone G40. prokMSA_id:009380 X91523 clone K8. prokMSA_id:009393 Z48263 Aeromonas sp. str. BB16. prokMSA_id:009414 Z48264 Aeromonas sp. str. BB3. prokMSA_id:009371 Z48266 Aeromonas sp. str. BB6. prokMSA_id:009379 Z48270 Aeromonas sp. str. BB7. prokMSA_id:009394 Z48271 Aeromonas sp. str. BB8. prokMSA_id:009435 Z77384 str. 1-140 C45. prokMSA_id:009370 Z77427 str. 1-420 C60. prokMSA_id:018982 Z93952 prokMSA_id:009423 Z95598 str. MR21G. prokMSA_id:036267 Z95612 prokMSA_id:029627 Z95615 2.28.3.25 ENVIRONMENTAL_CLONE_A47T 1 seq 2.28.3.25.999 poor quality 1 seq prokMSA_id:009456 X91470 AEspoe hard rock 10-626m below ground surface clone A47t. 2.28.3.26 HAEMOPHILUS-PASTEURELLA_GROUP 613 seqs 2.28.3.26.1 PAS.BISGAARD_TAXON_14_SUBGROUP 5 seqs 2.28.3.26.1.001 OTU 2 seqs prokMSA_id:091016 AY172729 Bisgaard taxon 32 strain HPA106 prokMSA_id:091205 AY172730 Bisgaard taxon 32 strain 5108/S2/90 2.28.3.26.1.002 OTU 1 seq prokMSA_id:091601 AY172725 Bisgaard Taxon 14 2.28.3.26.1.999 poor quality 2 seqs prokMSA_id:009457 L06086 Pasteurella sp. str. Bisgaard Taxon 14 CCUG 16499R. prokMSA_id:009458 L06087 Pasteurella sp. str. Bisgaard Taxon 14 CCUG 28027. 2.28.3.26.2 PAS.TESTUDINIS 1 seq 2.28.3.26.2.999 poor quality 1 seq prokMSA_id:009459 L06090 Pasteurella testudinis CCUG 19802 . 2.28.3.26.3 PAS.MULTOCIDA 3 seqs 2.28.3.26.3.999 poor quality 3 seqs prokMSA_id:029197 AH001722 P.multocida V3-V4-V5 variable regions segment 1 prokMSA_id:009460 M23298 Pasteurella multocida str. W-9217 NCTC 10322 . prokMSA_id:040576 M23299 P.multocida V3-V4-V5 variable regions segment 2 2.28.3.26.4 PAS.BISGAARD_TAXON_13_SUBGROUP 43 seqs 2.28.3.26.4.001 OTU 28 seqs prokMSA_id:042806 AF224297 Pasteurella multocida subsp. gallicida prokMSA_id:034012 AF224298 Pasteurella sp. MCCM 00657 prokMSA_id:029263 AF225205 Pasteurella multocida subsp. septica prokMSA_id:021669 AF294410 Pasteurella multocida subsp. multocida prokMSA_id:018195 AF294411 Pasteurella multocida subsp. septica strain CCUG 17977 prokMSA_id:017819 AF294412 Pasteurella multocida subsp. gallicida prokMSA_id:071254 AF294413 Pasteurella multocida subsp. septica strain D2319_98 prokMSA_id:022833 AF294414 Pasteurella multocida subsp. septica strain D25_99 prokMSA_id:051422 AF294415 Pasteurella multocida subsp. septica strain D129_99 prokMSA_id:051141 AF294416 Pasteurella multocida subsp. septica strain D138_99 prokMSA_id:072299 AF294417 Pasteurella multocida subsp. septica strain D167_99 prokMSA_id:023614 AF294418 Pasteurella multocida subsp. septica strain D508_99 prokMSA_id:038014 AF294419 Pasteurella multocida subsp. septica strain D708_99 prokMSA_id:026198 AF294420 Pasteurella multocida subsp. septica strain D777_00 prokMSA_id:074049 AF294421 Pasteurella multocida subsp. septica strain D496_99 prokMSA_id:070763 AF294422 Pasteurella multocida subsp. septica strain D514_99 prokMSA_id:070816 AF294423 Pasteurella multocida subsp. septica strain D755_99 prokMSA_id:019379 AF326323 Pasteurella multocida subsp. gallicida strain HIM830-7T prokMSA_id:072192 AF326324 Pasteurella multocida subsp. gallicida strain 77179 prokMSA_id:049634 AF326325 Pasteurella multocida subsp. septica prokMSA_id:062944 AY057994 Pasteurella multocida subsp. tigris complete prokMSA_id:018868 AY078996 Pasteurella multocida strain PM2 prokMSA_id:016802 AY078997 Pasteurella multocida strain PM966 prokMSA_id:045341 AY078998 Pasteurella multocida subsp. gallicida strain NCTC 10204 prokMSA_id:037670 AY078999 Pasteurella multocida subsp. multocida strain NCTC 10322 prokMSA_id:037549 AY079000 Pasteurella multocida subsp. septica strain NCTC 11995 prokMSA_id:089383 AY239615 Pasteurella sp. prokMSA_id:040556 E05329 of Pasteurella multocida 2.28.3.26.4.002 OTU 1 seq prokMSA_id:084897 AY242721 soil clone Tc131-39 2.28.3.26.4.999 poor quality 14 seqs prokMSA_id:041506 AF176289 Pasteurella multocida strain NCTC10322 prokMSA_id:019527 AF176290 Pasteurella multocida strain H236 prokMSA_id:032642 AF176291 Pasteurella multocida strain H229 prokMSA_id:049486 AF176292 Pasteurella multocida strain ATCC11039 prokMSA_id:016883 AF176293 Pasteurella multocida strain H116 prokMSA_id:036498 AF176294 Pasteurella multocida strain H117 prokMSA_id:038814 AF176295 Pasteurella haemolytica strain H239 prokMSA_id:031658 AF176296 Pasteurella multocida strain H235 prokMSA_id:026731 AF176297 Pasteurella multocida strain H231 prokMSA_id:035255 AF176298 Pasteurella multocida strain H129 prokMSA_id:041984 AF176301 Actinobacillus ureae prokMSA_id:090614 AY239614 Pasteurella sp. prokMSA_id:009462 L06085 Pasteurella sp. str. Bisgaard Taxon 13. prokMSA_id:009461 M35018 Pasteurella multocida str. W-9217 NCTC 10322 . 2.28.3.26.5 PAS.DAGMATIS 2 seqs 2.28.3.26.5.001 OTU 1 seq prokMSA_id:069985 AF224296 Pasteurella pneumotropica 2.28.3.26.5.999 poor quality 1 seq prokMSA_id:009463 M75051 Pasteurella dagmatis ATCC 43325 . 2.28.3.26.6 PAS.STOMATIS 1 seq 2.28.3.26.6.999 poor quality 1 seq prokMSA_id:009464 M75050 Pasteurella stomatis ATCC 43327 . 2.28.3.26.7 PASTEURELLA.CANIS 2 seqs 2.28.3.26.7.001 OTU 1 seq prokMSA_id:018332 AF227861 Pasteurella sp. 91985 2.28.3.26.7.999 poor quality 1 seq prokMSA_id:009465 M75049 Pasteurella canis ATCC 43326 . 2.28.3.26.8 PAS.SP_CCUG_19794 1 seq 2.28.3.26.8.001 OTU 1 seq prokMSA_id:009466 M75052 Pasteurella sp. CCUG 19794. 2.28.3.26.9 PAS.ANATIS_SUBGROUP 28 seqs 2.28.3.26.9.001 OTU 1 seq prokMSA_id:009470 L06078 Pasteurella sp. str. Bisgaard Taxon 2. 2.28.3.26.9.002 OTU 1 seq prokMSA_id:009469 L06079 Pasteurella sp. str. Bisgaard Taxon 3. 2.28.3.26.9.003 OTU 17 seqs prokMSA_id:074034 AF224310 Actinobacillus cf. salpingitidis CCUG 28018 prokMSA_id:030522 AF228001 Pasteurella anatis strain F149 prokMSA_id:074083 AF228002 Pasteurella anatis strain F279 prokMSA_id:070037 AF228003 Salpingitia sp. CCM 5995 prokMSA_id:074275 AF228004 Salpingitia sp. 10672/9 prokMSA_id:034804 AF228005 Salpingitia sp. Gerl.3348/80 prokMSA_id:048840 AF228006 Salpingitia sp. Gerl.220 prokMSA_id:073745 AF228007 Salpingitia sp. IPDH 697/78 prokMSA_id:072708 AF228008 Salpingitia sp. 10672/6 prokMSA_id:070476 AF228009 Salpingitia sp. 12158 prokMSA_id:071725 AF228010 Salpingitia sp. 20558 prokMSA_id:073524 AF228011 Salpingitia sp. 36961/sv7 prokMSA_id:050261 AF228012 Salpingitia sp. BK3387.2 prokMSA_id:073377 AF228013 Salpingitia sp. BJ3453 prokMSA_id:073614 AF228014 Salpingitia sp. Gerl.4224 prokMSA_id:038490 AF376422 ckncm189-F3M.1H8 prokMSA_id:073007 AY038594 Pasteurella anatis strain Hom.3 2.28.3.26.9.004 OTU 5 seqs prokMSA_id:052792 AF228015 Salpingitia sp. CCM 5974 prokMSA_id:070689 AF228016 Salpingitia sp. CCM 5975 prokMSA_id:027031 AF228017 Salpingitia sp. CCM 5976 prokMSA_id:042277 AF228018 Salpingitia sp. Gerl.2740/89 prokMSA_id:064296 AY038591 Actinobacillus salpingitidis 2.28.3.26.9.999 poor quality 4 seqs prokMSA_id:064295 AY038592 Pasteurella anatis strain B96/20 prokMSA_id:064294 AY038593 Pasteurella anatis strain B96/24 prokMSA_id:009467 L06077 Actinobacillus salpingitidis CCUG 23139. prokMSA_id:009468 M75054 Pasteurella anatis str. F149 ATCC 43329 . 2.28.3.26.10 H.INFLUENZAE_SUBGROUP 76 seqs 2.28.3.26.10.001 OTU 1 seq prokMSA_id:009511 X89379 Pasteurella phocoenarum str. M1063U NCTC 12872. 2.28.3.26.10.002 OTU 3 seqs prokMSA_id:009510 X89377 Actinobacillus delphinicola str. M1063L NCTC 12871. prokMSA_id:072637 X89378 A.delphinicola strain M906 prokMSA_id:038556 X89380 A.delphinicola strain M39 2.28.3.26.10.003 OTU 3 seqs prokMSA_id:046278 AF224307 Haemophilus quentini prokMSA_id:009509 X87978 Haemophilus influenzae str. 16N CIP 103723. prokMSA_id:009484 X87979 Haemophilus influenzae str. 2406. 2.28.3.26.10.004 OTU 14 seqs prokMSA_id:071828 AF076035 Haemophilus influenzae prokMSA_id:044852 AF224306 Haemophilus influenzae ATCC 9833 prokMSA_id:090651 AY325754 Haemophilus sp. isolate PCR amplicon RL 1963 prokMSA_id:009483 L42023 Haemophilus influenzae str. Rd =rrnF . prokMSA_id:009482 L42023 Haemophilus influenzae str. Rd =rrnC . prokMSA_id:009481 L42023 Haemophilus influenzae str. Rd =rrnE . prokMSA_id:009507 L42023 Haemophilus influenzae str. Rd = . prokMSA_id:009473 L42023 Haemophilus influenzae str. Rd =rrnD . prokMSA_id:009500 L42023 Haemophilus influenzae str. Rd =rrnB . prokMSA_id:009471 M35019 Haemophilus influenzae ATCC 33391 . prokMSA_id:049616 NC_000907 Haemophilus influenzae Rd complete genome prokMSA_id:009479 X87976 Haemophilus influenzae str. biotype III CCUG 7585. prokMSA_id:009476 X87977 Haemophilus influenzae str. biotype IV CIP 5483. prokMSA_id:009506 Z22806 Haemophilus influenzae. 2.28.3.26.10.005 OTU 2 seqs prokMSA_id:009501 AF024532 Pasteurella mairii CCUG 27189 . prokMSA_id:009503 L06089 Pasteurella mairii CCUG 27189 . 2.28.3.26.10.006 OTU 14 seqs prokMSA_id:009497 AF139577 Pasteurella aerogenes str. JF2011. prokMSA_id:009496 AF139578 Pasteurella aerogenes str. JF2118. prokMSA_id:009495 AF139579 Pasteurella aerogenes str. JF2006. prokMSA_id:009494 AF139580 Pasteurella aerogenes str. JF2032. prokMSA_id:009493 AF139581 Pasteurella aerogenes str. JF2034. prokMSA_id:009492 AF139582 Pasteurella aerogenes str. JF2039. prokMSA_id:009491 AF139583 Pasteurella aerogenes str. JF2142. prokMSA_id:009490 AF139584 Pasteurella aerogenes str. JF2072. prokMSA_id:009489 AF139585 Pasteurella aerogenes str. JF2101. prokMSA_id:009488 AF139586 Pasteurella aerogenes str. JF2185. prokMSA_id:009487 AF139587 Pasteurella aerogenes str. JF2154. prokMSA_id:046397 AF371857 clone p-4772-2Wb2 prokMSA_id:009486 U66491 Pasteurella aerogenes str. P-172-71 ATCC 27883 . prokMSA_id:009498 U66492 Pasteurella aerogenes str. P. 2.28.3.26.10.007 OTU 2 seqs prokMSA_id:009478 AF012090 Pasteurella pneumotropica str. CNP 160. prokMSA_id:074548 AF224301 Pasteurellaceae gen. sp. Forsyth A3 2.28.3.26.10.008 OTU 1 seq prokMSA_id:009477 M75083 Pasteurella pneumotropica NCTC 8141 . 2.28.3.26.10.009 OTU 2 seqs prokMSA_id:009475 Y09653 Actinobacillus sp. str. M2000/95/1. prokMSA_id:009474 Y09654 Actinobacillus sp. str. M1933/96/1. 2.28.3.26.10.010 OTU 1 seq prokMSA_id:019891 AF224305 Haemophilus influenzae ATCC 8142 2.28.3.26.10.011 OTU 1 seq prokMSA_id:033152 AJ243202 Pasteurella salmonicida isolate 95A1 2.28.3.26.10.012 OTU 1 seq prokMSA_id:071067 AF224304 Pasteurella sp. MCCM 02120 2.28.3.26.10.013 OTU 1 seq prokMSA_id:072532 AY005033 Haemophilus sp. oral clone BJ095 2.28.3.26.10.014 OTU 2 seqs prokMSA_id:082586 AF487728 Pasteurella gallinarum strain NCTC 11051 prokMSA_id:082728 AF487729 Pasteurella gallinarum strain R44sv 2.28.3.26.10.015 OTU 1 seq prokMSA_id:091169 AY172726 Bisgaard taxon 22 2.28.3.26.10.999 poor quality 27 seqs prokMSA_id:019345 AB028351 oral SH62 prokMSA_id:009504 AF024526 Actinobacillus muris str. 80-443D CCUG 16938 . prokMSA_id:009485 AF024527 CCUG 28030. prokMSA_id:053170 AF024529 Bisgaard Taxon 17 complete prokMSA_id:009505 AF024530 Haemophilus influenzae-murium NCTC 11146. prokMSA_id:016920 AF202021 human oral A50 prokMSA_id:074378 AF224292 Haemophilus felis prokMSA_id:070728 AF224300 Pasteurella sp. MCCM 00235 prokMSA_id:023898 AF224302 Actinobacillus sp. CCUG 28030 prokMSA_id:070974 AF224308 Haemophilus influenzae MCCM 02082 prokMSA_id:071878 AF224309 Haemophilus influenzae MCCM 02083 prokMSA_id:070512 AF268953 Actinobacillus porcinus strain H1223 prokMSA_id:025765 AH001665 H.influenzae V3-V4-V5 variable regions segment 1 prokMSA_id:043650 AJ290760 Haemophilus segnis strain FSK3099/96 prokMSA_id:042202 AJ290767 Haemophilus haemolyticus strain U175 prokMSA_id:060178 AJ438681 Pasteurella pneumotropica strain P421 prokMSA_id:060176 AJ438682 Pasteurella pneumotropica strain P309 prokMSA_id:071427 AJ438684 Actinobacillus muris strain P1573 prokMSA_id:088850 AY325756 Haemophilus sp. isolate PCR amplicon RL 2108 prokMSA_id:009480 M23300 Haemophilus influenzae NCTC 8143 . prokMSA_id:039345 M23301 H.influenzae V3-V4-V5 variable regions segment 2 prokMSA_id:009512 M75044 Haemophilus aegyptius NCTC 8502 . prokMSA_id:009472 M75045 Haemophilus haemolyticus NCTC 10659 . prokMSA_id:009502 M75047 Actinobacillus seminis ATCC 15768 . prokMSA_id:009508 M75048 Pasteurella aerogenes str. P-172-71 ATCC 27883 . prokMSA_id:009499 U02897 Haemophilus influenzae ATCC 33391 . prokMSA_id:047553 X89381 A.delphinicola strain M266 2.28.3.26.11 H.PARASUIS_SUBGROUP 82 seqs 2.28.3.26.11.001 OTU 15 seqs prokMSA_id:073051 AF268941 Actinobacillus minor strain H897 prokMSA_id:048893 AF268943 Actinobacillus minor strain H1268 prokMSA_id:070581 AF268944 Actinobacillus minor strain H1275 prokMSA_id:027164 AF268945 Actinobacillus minor strain H1284 prokMSA_id:031668 AF268947 Actinobacillus minor strain H1468 prokMSA_id:074197 AF268948 Actinobacillus minor strain H1470 prokMSA_id:073428 AF268949 Actinobacillus minor strain H1473 prokMSA_id:074192 AF268950 Actinobacillus minor strain H1474 prokMSA_id:026862 AF268951 Actinobacillus minor strain H1475 prokMSA_id:050727 AF371853 clone p-2130-s959-2 prokMSA_id:018347 AF371854 clone p-1338-a2 prokMSA_id:021372 AF371855 clone p-4752-2Wb2 prokMSA_id:070644 AF486274 Actinobacillus porcitonsillarum strain 99-536-55H-F prokMSA_id:073306 AF486275 Actinobacillus porcitonsillarum strain RF0347 prokMSA_id:009538 M75077 Haemophilus sp. str. 202 sub_species minor group. 2.28.3.26.11.005 OTU 4 seqs prokMSA_id:009515 AF025839 str. JF1390. prokMSA_id:073923 AF224288 Pasteurella aerogenes MCCM 01550 prokMSA_id:073163 AF224289 Actinobacillus rossii prokMSA_id:029369 AF224290 Pasteurella aerogenes MCCM 01551 2.28.3.26.11.006 OTU 5 seqs prokMSA_id:073816 AF268952 Actinobacillus porcinus strain H1215 prokMSA_id:071733 AF268955 Actinobacillus porcinus strain H1281 prokMSA_id:070062 AF268958 Actinobacillus porcinus strain H1498 prokMSA_id:070580 AF371856 clone p-4307-4Wa3 prokMSA_id:009514 U65583 Actinobacillus porcinus str. NM319 . 2.28.3.26.11.007 OTU 1 seq prokMSA_id:009513 U65584 Actinobacillus indolicus str. 46KC2 . 2.28.3.26.11.009 OTU 40 seqs prokMSA_id:009519 AB004024 Haemophilus parasuis str. No.131. prokMSA_id:009520 AB004025 Haemophilus parasuis str. 188. prokMSA_id:009521 AB004026 Haemophilus parasuis str. 271. prokMSA_id:009522 AB004027 Haemophilus parasuis str. 327. prokMSA_id:009533 AB004028 Haemophilus parasuis str. 354. prokMSA_id:009534 AB004029 Haemophilus parasuis str. 362. prokMSA_id:009535 AB004030 Haemophilus parasuis str. 366. prokMSA_id:009523 AB004031 Haemophilus parasuis str. 427. prokMSA_id:009524 AB004032 Haemophilus parasuis str. No.4 MAFF 911032. prokMSA_id:009525 AB004033 Haemophilus parasuis str. 545. prokMSA_id:009526 AB004034 Haemophilus parasuis str. 550. prokMSA_id:009527 AB004035 Haemophilus parasuis str. 635. prokMSA_id:009536 AB004036 Haemophilus parasuis str. 697. prokMSA_id:009528 AB004037 Haemophilus parasuis str. 82. prokMSA_id:009537 AB004038 Haemophilus parasuis str. Nagasaki MAFF 911038. prokMSA_id:009529 AB004039 Haemophilus parasuis str. SW114 MAFF 911035. prokMSA_id:009530 AB004040 Haemophilus parasuis str. SW124 MAFF 911037. prokMSA_id:009531 AB004041 Haemophilus parasuis str. SW140 MAFF 911034. prokMSA_id:030824 AB078972 Haemophilus parasuis isolate:312 prokMSA_id:024900 AB078973 Haemophilus parasuis isolate:319 prokMSA_id:023554 AB078974 Haemophilus parasuis strain:322 prokMSA_id:071539 AF268959 Actinobacillus indolicus strain H873 prokMSA_id:070885 AF268960 Actinobacillus indolicus strain H1235 prokMSA_id:042737 AF268961 Actinobacillus indolicus strain H1261 prokMSA_id:031672 AF268962 Actinobacillus indolicus strain H1269 prokMSA_id:049124 AF268964 Actinobacillus indolicus strain H1419 prokMSA_id:022523 AF268965 Actinobacillus indolicus strain H1422 prokMSA_id:071115 AF268966 Actinobacillus indolicus strain H1106 prokMSA_id:060750 AY126699 Haemophilus parasuis No.4 prokMSA_id:060749 AY126700 Haemophilus parasuis SW140 prokMSA_id:060748 AY126701 Haemophilus parasuis SW114 prokMSA_id:060745 AY126702 Haemophilus parasuis SW124 prokMSA_id:060747 AY126703 Haemophilus parasuis Nagasaki prokMSA_id:060746 AY126704 Haemophilus parasuis No.131 prokMSA_id:056386 AY126705 Haemophilus parasuis No.174 prokMSA_id:056437 AY126706 Haemophilus parasuis D74 prokMSA_id:060744 AY126707 Haemophilus parasuis Jena10 prokMSA_id:060743 AY126708 Haemophilus parasuis IA-84-13676A prokMSA_id:060736 AY126710 Haemophilus parasuis IA-83-17425 prokMSA_id:060738 AY126711 Haemophilus parasuis IA-84-22113 2.28.3.26.11.010 OTU 1 seq prokMSA_id:032352 AJ251339 Bisgaardia hudsonenesis strain 98-D-690B 2.28.3.26.11.011 OTU 1 seq prokMSA_id:035735 AF224293 Pasteurella sp. MCCM 02539 2.28.3.26.11.012 OTU 1 seq prokMSA_id:045916 AF224291 Pasteurella caballi MCCM 00841 2.28.3.26.11.013 OTU 1 seq prokMSA_id:072436 AF268963 Actinobacillus indolicus strain H1271 2.28.3.26.11.014 OTU 1 seq prokMSA_id:074465 AF224303 Pasteurella sp. CCUG 28028 2.28.3.26.11.015 OTU 3 seqs prokMSA_id:086210 AF487722 Bisgaard Taxon 33 strain 94 prokMSA_id:086687 AF487723 Bisgaard Taxon 33 strain 101 prokMSA_id:083013 AF487724 Bisgaard Taxon 33 strain 103 2.28.3.26.11.016 OTU 1 seq prokMSA_id:091308 AY172733 Pasteurellaceae C67 2.28.3.26.11.999 poor quality 8 seqs prokMSA_id:009516 AF024531 Pasteurella cf. haemolytica CCUG 28028 CCUG 28028. prokMSA_id:070521 AF268946 Actinobacillus minor strain H1363 prokMSA_id:072758 AF268954 Actinobacillus porcinus strain H1265 prokMSA_id:072255 AF268956 Actinobacillus porcinus strain H1424 prokMSA_id:060742 AY126709 Haemophilus parasuis Jena6 prokMSA_id:009518 M75065 Haemophilus parasuis NCTC 4557 . prokMSA_id:009532 M75066 Haemophilus parasuis str. Nagasaki. prokMSA_id:009517 U65582 Actinobacillus minor str. NM305 . 2.28.3.26.12 H.PARACUNICULUS_SUBGROUP 9 seqs 2.28.3.26.12.001 OTU 1 seq prokMSA_id:073432 AF224295 Actinobacillus capsulatus P796 2.28.3.26.12.999 poor quality 8 seqs prokMSA_id:060224 AJ438675 Actinobacillus capsulatus strain P243 prokMSA_id:060222 AJ438676 Actinobacillus capsulatus strain P564 prokMSA_id:060221 AJ438677 Actinobacillus capsulatus strain P662 prokMSA_id:072474 AJ438678 Actinobacillus capsulatus strain P796 prokMSA_id:060220 AJ438679 Actinobacillus capsulatus strain P1364 prokMSA_id:009541 M75061 Haemophilus paracuniculus ATCC 29986 . prokMSA_id:009540 M75062 Actinobacillus capsulatus str. P243 NCTC 11408 . prokMSA_id:009539 M75069 Actinobacillus capsulatus CCUG 12396 . 2.28.3.26.13 H.DUCREYI_SUBGROUP 16 seqs 2.28.3.26.13.001 OTU 1 seq prokMSA_id:009547 Y17190 Lonepinella koalarum ACM 3896. 2.28.3.26.13.002 OTU 8 seqs prokMSA_id:089543 AE017151 Haemophilus ducreyi strain 35000HP section 1 of 6 of the complete genome prokMSA_id:088305 AE017152 Haemophilus ducreyi strain 35000HP section 2 of 6 of the complete genome prokMSA_id:089152 AE017153 Haemophilus ducreyi strain 35000HP section 3 of 6 of the complete genome prokMSA_id:090008 AE017156 Haemophilus ducreyi strain 35000HP section 6 of 6 of the complete genome prokMSA_id:066257 AF508149 Haemophilus ducreyi strain RLUH-GUM prokMSA_id:062471 AF525028 Haemophilus ducreyi isolate Amsterdam prokMSA_id:009545 M63900 Haemophilus ducreyi CIP 542 . prokMSA_id:089921 NC_002940 Haemophilus ducreyi 35000HP complete genome 2.28.3.26.13.999 poor quality 7 seqs prokMSA_id:009549 L06088 Pasteurella bettyae CCUG 2042 . prokMSA_id:009550 M75053 Pasteurella langaa ATCC 43328 . prokMSA_id:009544 M75078 Haemophilus ducreyi CIP 542 . prokMSA_id:009543 M75079 Haemophilus ducreyi str. HD 35000 ATCC 33922. prokMSA_id:009542 M75084 Haemophilus ducreyi str. KC57 ATCC 27722. prokMSA_id:009546 Y17189 Lonepinella koalarum str. LX-1 ACM 3666 . prokMSA_id:009548 Y17191 Lonepinella koalarum ACM 3496. 2.28.3.26.14 PAS.TREHALOSI_SUBGROUP 12 seqs 2.28.3.26.14.001 OTU 4 seqs prokMSA_id:058590 AB080217 rumen clone:RE8 prokMSA_id:009552 U57073 Pasteurella trehalosi str. T3 PH 68. prokMSA_id:009553 U57074 Pasteurella trehalosi str. T10 PH 252. prokMSA_id:009554 U57075 Pasteurella trehalosi str. T4 PH 246. 2.28.3.26.14.002 OTU 1 seq prokMSA_id:031902 AF227862 Pasteurella sp. 37234 2.28.3.26.14.003 OTU 1 seq prokMSA_id:091315 AY172732 Bisgaard taxon 40 2.28.3.26.14.004 OTU 1 seq prokMSA_id:091910 AY172724 Bisgaard taxon 3 biovar 1 2.28.3.26.14.999 poor quality 5 seqs prokMSA_id:039543 AF176279 Pasteurella haemolytica strain ATCC33367 prokMSA_id:033358 AF176280 Pasteurella haemolytica strain ATCC33374 prokMSA_id:043001 AF176281 Pasteurella haemolytica strain H160 prokMSA_id:026381 AF224294 Bisgaard Taxon 16 prokMSA_id:009551 M75063 Mannheimia haemolytica NCTC 10624. 2.28.3.26.15 PAS.VOLANTIUM_SUBGROUP 22 seqs 2.28.3.26.15.001 OTU 1 seq prokMSA_id:009555 M75064 Haemophilus haemoglobinophilus NCTC 1659 . 2.28.3.26.15.002 OTU 2 seqs prokMSA_id:036769 AF224311 Haemophilus sp. MCCM 01557 prokMSA_id:091618 AY172734 Pasteurellaceae B96/37 2.28.3.26.15.003 OTU 3 seqs prokMSA_id:084636 AF487725 Pasteurella gallinarum strain CCUG 18400 prokMSA_id:082532 AF487726 Pasteurella gallinarum strain A88 prokMSA_id:085469 AF487727 Pasteurella gallinarum strain PG173 2.28.3.26.15.004 OTU 1 seq prokMSA_id:085183 AY216868 Bisgaard Taxon 33 strain Gerl. 236/81 2.28.3.26.15.005 OTU 1 seq prokMSA_id:085860 AY216870 Bisgaard Taxon 33 strain B96/5 2.28.3.26.15.006 OTU 1 seq prokMSA_id:091583 AY172731 Bisgaard taxon 34 2.28.3.26.15.999 poor quality 13 seqs prokMSA_id:047337 AF176300 Pasteurella multocida strain H154 prokMSA_id:070389 AF224312 Haemophilus sp. CCUG 19808 prokMSA_id:091260 AY172723 Pasteurella gallinarum prokMSA_id:091545 AY172735 Pasteurellaceae 29 prokMSA_id:090234 AY315293 rumen clone JRCI54 prokMSA_id:009562 L06082 Pasteurella sp. str. Bisgaard Taxon 7. prokMSA_id:009563 M75055 Pasteurella sp. CCUG 18782. prokMSA_id:009557 M75056 Haemophilus sp. prokMSA_id:009556 M75057 Haemophilus paragallinarum NCTC 11296 . prokMSA_id:009558 M75058 Pasteurella avium str. IPDH 2654 NCTC 11297 . prokMSA_id:009559 M75059 Pasteurella gallinarum NCTC 11188 . prokMSA_id:009561 M75060 Pasteurella volantium NCTC 4101. prokMSA_id:009560 M75070 Pasteurella volantium NCTC 3438 . 2.28.3.26.16 PAS.BISGAARD_TAXON_5 1 seq 2.28.3.26.16.999 poor quality 1 seq prokMSA_id:009564 L06080 Pasteurella sp. str. Bisgaard Taxon 5. 2.28.3.26.17 ACB.PLEUROPNEUMONIAE_SUBGROUP 115 seqs 2.28.3.26.17.002 OTU 14 seqs prokMSA_id:009582 AF033058 Actinobacillus pleuropneumoniae str. 634. prokMSA_id:009583 AF033059 Actinobacillus pleuropneumoniae str. 658. prokMSA_id:009584 AF033060 Actinobacillus pleuropneumoniae str. 585 1565 7949 11498 761. prokMSA_id:009581 AF146371 Actinobacillus pleuropneumoniae str. 77002. prokMSA_id:026134 AF302255 Actinobacillus pleuropneumoniae strain N273 rrs prokMSA_id:033721 AF302256 Actinobacillus pleuropneumoniae strain 3906 rrs prokMSA_id:042766 AY017472 Actinobacillus pleuropneumoniae HS143 prokMSA_id:009568 D30030 Actinobacillus pleuropneumoniae str. Shope4074. prokMSA_id:009580 D30031 Actinobacillus pleuropneumoniae str. S1536. prokMSA_id:009588 D30032 Actinobacillus pleuropneumoniae str. Hi-1. prokMSA_id:029483 E05330 of Actinobacillus pleuropneumoniae prokMSA_id:045092 E05331 of Actinobacillus pleuropneumoniae prokMSA_id:051313 E05332 of Actinobacillus pleuropneumoniae prokMSA_id:009579 M75068 Actinobacillus lignieresii NCTC 4189 . 2.28.3.26.17.004 OTU 3 seqs prokMSA_id:073547 AF247712 Actinobacillus sp. CCUG 24862 prokMSA_id:069899 AY029174 Actinobacillus arthritidis prokMSA_id:009565 L06084 Pasteurella sp. str. Bisgaard Taxon 9. 2.28.3.26.17.006 OTU 5 seqs prokMSA_id:074211 AF224283 Actinobacillus pleuropneumoniae MCCM 00189 prokMSA_id:021084 AF359941 Acidithiobacillus thiooxidans prokMSA_id:035257 AJ290758 Haemophilus parahaemolyticus strain HIM570-6 prokMSA_id:052835 AJ295746 Haemophilus parahaemolyticus strain NCTC 8479T prokMSA_id:026164 AY005034 Haemophilus sp. oral clone BJ021 2.28.3.26.17.008 OTU 16 seqs prokMSA_id:009589 AF015299 Actinobacillus suis CCM 5586 . prokMSA_id:009573 AF019645 Actinobacillus suis str. 2247. prokMSA_id:009586 AF145255 Actinobacillus capsulatus str. 63595. prokMSA_id:058554 AF247713 Actinobacillus sp. Ac 7 prokMSA_id:072164 AF247714 Actinobacillus sp. F 92 prokMSA_id:058552 AF247715 Actinobacillus sp. F 119 prokMSA_id:058551 AF247716 Actinobacillus sp. F 154 prokMSA_id:058549 AF247717 Actinobacillus sp. F 141 prokMSA_id:071361 AF247718 Actinobacillus equuli subsp. haemolyticus prokMSA_id:072024 AF247719 Actinobacillus sp. H 4272/4 prokMSA_id:058548 AF247720 Actinobacillus equuli strain I5445/4 prokMSA_id:056644 AF247721 Actinobacillus equuli strain T 355/87 prokMSA_id:073342 AF247722 Actinobacillus lignieresii strain F 127 prokMSA_id:070395 AF247723 Actinobacillus lignieresii strain F 264 prokMSA_id:070103 AF381187 Actinobacillus cf. equuli prokMSA_id:009585 M75067 Actinobacillus capsulatus CCUG 19799. 2.28.3.26.17.009 OTU 3 seqs prokMSA_id:045954 AF224284 Actinobacillus sp. CCUG 28015 prokMSA_id:091684 AY172727 Bisgaard taxon 26 biovar 1 prokMSA_id:091524 AY172728 Bisgaard taxon 26 biovar 2 2.28.3.26.17.010 OTU 1 seq prokMSA_id:072378 AF224285 Actinobacillus capsulatus CCUG 37035 2.28.3.26.17.011 OTU 1 seq prokMSA_id:093878 AF487721 Bisgaard Taxon 37 strain 111 2.28.3.26.17.999 poor quality 72 seqs prokMSA_id:030098 AB028341 oral SH24 prokMSA_id:038825 AB028445 oral RP55-51 prokMSA_id:072570 AF381186 Actinobacillus equuli prokMSA_id:036829 AF397302 Actinobacillus ureae prokMSA_id:047407 AH001562 A.hominis V3-V4-V5 variable regions segment 1 prokMSA_id:026741 AH001563 A.equuli V3-V4-V5 variable regions segment 1 prokMSA_id:028836 AH001564 A.lignieresii V3-V4-V5 variable regions segment 1 prokMSA_id:021942 AJ290759 Haemophilus paraphrohaemolyticus strain P1300 prokMSA_id:060217 AJ438630 Actinobacillus lignieresii strain P159 prokMSA_id:060216 AJ438631 Actinobacillus lignieresii strain P160 prokMSA_id:055950 AJ438632 Actinobacillus lignieresii strain P236 prokMSA_id:060215 AJ438633 Actinobacillus lignieresii strain P670 prokMSA_id:060214 AJ438634 Actinobacillus lignieresii strain P671 prokMSA_id:060213 AJ438635 Actinobacillus lignieresii strain P1138 prokMSA_id:060211 AJ438636 Actinobacillus pleuropneumoniae strain P1595 prokMSA_id:060212 AJ438637 Actinobacillus pleuropneumoniae strain P597 prokMSA_id:060210 AJ438638 Actinobacillus pleuropneumoniae strain P601 prokMSA_id:060207 AJ438639 Actinobacillus pleuropneumoniae strain HK356 prokMSA_id:060208 AJ438640 Actinobacillus pleuropneumoniae strain HK361 prokMSA_id:055513 AJ438641 Actinobacillus pleuropneumoniae strain HK407 prokMSA_id:060209 AJ438642 Actinobacillus pleuropneumoniae strain Femo prokMSA_id:071481 AJ438643 Actinobacillus lignieresii strain P680 prokMSA_id:060206 AJ438644 Actinobacillus lignieresii strain P1293 prokMSA_id:074376 AJ438645 Actinobacillus lignieresii strain CCUG 22229 prokMSA_id:060203 AJ438646 Actinobacillus lignieresii strain CCUG 22231 prokMSA_id:060202 AJ438647 Bisgaard Taxon 9 strain F141 prokMSA_id:071377 AJ438648 Bisgaard Taxon 9 strain H4272/4 prokMSA_id:073411 AJ438649 Actinobacillus equuli strain P157 prokMSA_id:073355 AJ438650 Actinobacillus equuli strain P238 prokMSA_id:072476 AJ438651 Actinobacillus equuli strain P240 prokMSA_id:060238 AJ438652 Actinobacillus equuli strain P242 prokMSA_id:060240 AJ438653 Actinobacillus equuli strain P861 prokMSA_id:072791 AJ438654 Actinobacillus equuli strain F92 prokMSA_id:060239 AJ438655 Actinobacillus equuli strain F119 prokMSA_id:060235 AJ438656 Actinobacillus equuli strain F490 prokMSA_id:073551 AJ438657 Actinobacillus sp. CCUG 19799 strain CCUG 19799 prokMSA_id:060230 AJ438658 Actinobacillus equuli strain T355/87 prokMSA_id:060231 AJ438659 Actinobacillus equuli strain P1577 prokMSA_id:055924 AJ438660 Actinobacillus suis strain P635 prokMSA_id:060198 AJ438661 Actinobacillus suis strain P954 prokMSA_id:060200 AJ438662 Actinobacillus suis strain P955 prokMSA_id:060199 AJ438663 Actinobacillus ureae strain P161 prokMSA_id:060196 AJ438664 Actinobacillus ureae strain P524 prokMSA_id:060197 AJ438665 Actinobacillus ureae strain P644 prokMSA_id:071820 AJ438666 Actinobacillus hominis strain P578 prokMSA_id:071953 AJ438667 Actinobacillus hominis strain P575 prokMSA_id:071944 AJ438668 Actinobacillus hominis strain P580 prokMSA_id:071149 AJ438669 Actinobacillus hominis strain P851 prokMSA_id:069793 AJ438670 Actinobacillus hominis strain P880 prokMSA_id:071802 AJ438671 Actinobacillus hominis strain P1587 prokMSA_id:072780 AJ438672 Actinobacillus hominis strain AFM47 prokMSA_id:060225 AJ438673 Actinobacillus sp. CCUG 24862 strain CCUG 24862 prokMSA_id:073523 AJ438674 Actinobacillus arthritidis strain 13/225/95 prokMSA_id:060194 AJ438680 Bisgaard Taxon 8 strain P1572 prokMSA_id:071020 AJ438683 Actinobacillus sp. CCUG 28015 strain CCUG 28015 prokMSA_id:072801 AJ438687 Actinobacillus equuli strain I5445/4 prokMSA_id:060187 AJ438688 Actinobacillus lignieresii strain P151 prokMSA_id:009577 L06076 Actinobacillus hominis CCUG 19800 . prokMSA_id:009576 L06083 Pasteurella sp. str. Bisgaard Taxon 8. prokMSA_id:009569 M23306 Actinobacillus hominis str. P578 NCTC 11529 . prokMSA_id:018804 M23307 A.hominis V3-V4-V5 variable regions segment 2 prokMSA_id:009571 M23308 Actinobacillus equuli NCTC 8529 . prokMSA_id:040726 M23309 A.equuli V3-V4-V5 variable regions segment 2 prokMSA_id:009566 M23310 Actinobacillus lignieresii str. CM 2 P.H. Martin NCTC 4976. prokMSA_id:045929 M23311 A.lignieresii V3-V4-V5 variable regions segment 2 prokMSA_id:009570 M35017 Actinobacillus lignieresii str. CM 2 P.H. Martin ATCC 19393. prokMSA_id:009578 M75071 Actinobacillus suis ATCC 15557. prokMSA_id:009572 M75072 Actinobacillus equuli NCTC 8529 . prokMSA_id:009575 M75073 Haemophilus parahaemolyticus NCTC 8479 . prokMSA_id:009587 M75074 Actinobacillus pleuropneumoniae str. R.Shope 4074? ATCC 27088 . prokMSA_id:009574 M75075 Actinobacillus ureae str. Henrikson 3520/59 T ATCC 25976 . prokMSA_id:009567 M75076 Haemophilus paraphrohaemolyticus str. Lawton 1 K. Zinnemann NCTC 2.28.3.26.18 MNH.HAEMOLYTICA_SUBGROUP 60 seqs 2.28.3.26.18.001 OTU 15 seqs prokMSA_id:009604 AF053887 Mannheimia UT26 str. UT26 CCUG 38455. prokMSA_id:009597 AF053888 Mannheimia glucosida str. P731 CCUG 38456. prokMSA_id:009616 AF053889 Mannheimia glucosida str. P925 CCUG 38457 . prokMSA_id:009598 AF053890 Mannheimia glucosida str. UT18 CCUG 38458. prokMSA_id:009614 AF053891 Mannheimia glucosida str. P737 CCUG 38459. prokMSA_id:009607 AF053892 Mannheimia glucosida str. P733 CCUG 38460. prokMSA_id:009599 AF053895 Mannheimia HPA102 str. HPA102 CCUG 38464. prokMSA_id:009605 AF053896 Mannheimia ruminalis str. HPA98 CCUG 38466. prokMSA_id:009610 AF053897 Mannheimia glucosida str. P730. prokMSA_id:009603 AF053900 Mannheimia ruminalis str. HPA92 CCUG 38470 . prokMSA_id:009600 AF060699 Mannheimia haemolytica NCTC 9380 . prokMSA_id:009596 U57066 Mannheimia haemolytica str. PH2PH8; serotype A1. prokMSA_id:009615 U57067 Mannheimia haemolytica str. PH344; serotype A11. prokMSA_id:009613 U57068 Mannheimia haemolytica str. PH152; UT23; serotype UG3. prokMSA_id:009606 U57069 Mannheimia haemolytica str. PH290; serotype UG3. 2.28.3.26.18.002 OTU 3 seqs prokMSA_id:009612 AF053899 Mannheimia varigena str. F155 CCM 5786. prokMSA_id:038515 AF224287 Pasteurella haemolytica CCUG 28148 prokMSA_id:009602 U57076 Pasteurella sp. str. Bisgaard Taxon 15 CCUG 16500. 2.28.3.26.18.003 OTU 3 seqs prokMSA_id:009611 AF053893 Mannheimia varigena str. 177 CCUG 38462 . prokMSA_id:009601 U57070 Mannheimia haemolytica str. PH40; UT35; serotype UG4. prokMSA_id:009593 U57071 Mannheimia haemolytica str. PH360; serotype UG4. 2.28.3.26.18.004 OTU 1 seq prokMSA_id:009609 AF053901 Mannheimia granulomatis str. Ph13 CCUG 26828. 2.28.3.26.18.005 OTU 1 seq prokMSA_id:009608 AF053902 Mannheimia granulomatis str. 26 ATCC 49244 . 2.28.3.26.18.006 OTU 3 seqs prokMSA_id:009591 AF053894 Mannheimia R19.2 str. R19.2 CCUG 38463. prokMSA_id:009592 AF053898 Mannheimia HPA121 str. HPA121 CCUG 38468. prokMSA_id:009590 U57072 Mannheimia haemolytica str. PH704; serotype UG5. 2.28.3.26.18.007 OTU 1 seq prokMSA_id:022261 AY029193 Mannheimia sp. 55E 2.28.3.26.18.008 OTU 3 seqs prokMSA_id:058595 AB080211 rumen clone:RE2 prokMSA_id:058587 AB080219 rumen clone:RE10 prokMSA_id:058584 AB080221 rumen clone:RE12 2.28.3.26.18.009 OTU 1 seq prokMSA_id:058594 AB080212 rumen clone:RE3 2.28.3.26.18.010 OTU 1 seq prokMSA_id:058593 AB080214 rumen clone:RE5 2.28.3.26.18.011 OTU 1 seq prokMSA_id:058591 AB080216 rumen clone:RE7 2.28.3.26.18.012 OTU 1 seq prokMSA_id:058586 AB080220 rumen clone:RE11 2.28.3.26.18.013 OTU 1 seq prokMSA_id:072830 AF224286 Mannheimia sp. MCCM 00145 2.28.3.26.18.014 OTU 1 seq prokMSA_id:088534 AY315307 rumen clone JRCJ08 2.28.3.26.18.017 OTU 5 seqs prokMSA_id:089791 AY315205 rumen clone JRCG17 prokMSA_id:089626 AY315212 rumen clone JRCG31 prokMSA_id:090464 AY315221 rumen clone JRCG45 prokMSA_id:090691 AY315317 rumen clone JRCJ20 prokMSA_id:090038 AY315358 rumen clone JRCK26 2.28.3.26.18.999 poor quality 19 seqs prokMSA_id:074830 AF176282 Pasteurella haemolytica strain H059 prokMSA_id:042805 AF176283 Pasteurella haemolytica strain ATCC33371 prokMSA_id:019734 AF176284 Pasteurella haemolytica strain ATCC33372 prokMSA_id:024697 AF176286 Pasteurella haemolytica strain H187 prokMSA_id:023515 AF176287 Pasteurella haemolytica strain H188 prokMSA_id:073002 AF216870 Mannheimia sp. BNO311 prokMSA_id:072211 AF268957 Actinobacillus porcinus strain H1469 prokMSA_id:089602 AY315210 rumen clone JRCG28 prokMSA_id:089396 AY315217 rumen clone JRCG37 prokMSA_id:088272 AY315226 rumen clone JRCG52 prokMSA_id:088802 AY315259 rumen clone JRCI09 prokMSA_id:088817 AY315268 rumen clone JRCI20 prokMSA_id:089501 AY315274 rumen clone JRCI28 prokMSA_id:089278 AY315286 rumen clone JRCI46 prokMSA_id:089797 AY315291 rumen clone JRCI52 prokMSA_id:088664 AY315369 rumen clone JRCK42 prokMSA_id:009595 M75080 Mannheimia haemolytica NCTC 9380 . prokMSA_id:009594 U57077 Pasteurella sp. str. Bisgaard Taxon 18 CCUG 20954. prokMSA_id:009617 U57078 Pasteurella sp. str. Bisgaard Taxon 20 CCUG 16504. 2.28.3.26.19 H.ACTINOMYCETEMCOMITANS_SUBGROUP 134 seqs 2.28.3.26.19.002 OTU 1 seq prokMSA_id:009623 AF024525 Actinobacillus succinogenes str. 130Z ATCC 55618 . 2.28.3.26.19.004 OTU 4 seqs prokMSA_id:092610 AY360355 Actinobacillus actinomycetemcomitans prokMSA_id:009621 M75035 Haemophilus actinomycetemcomitans str. FDC Y4. prokMSA_id:009636 M75037 Haemophilus actinomycetemcomitans ATCC 29524. prokMSA_id:009620 M75039 Haemophilus actinomycetemcomitans ATCC 33384 . 2.28.3.26.19.005 OTU 1 seq prokMSA_id:009619 AF024528 CCUG 15572. 2.28.3.26.19.007 OTU 2 seqs prokMSA_id:044396 AJ290754 Haemophilus parainfluenzae strain P1525 prokMSA_id:074655 AJ290755 Haemophilus parainfluenzae strain HK85 2.28.3.26.19.009 OTU 1 seq prokMSA_id:079654 AY187378 clone csbio160231 2.28.3.26.19.010 OTU 13 seqs prokMSA_id:081079 AF549387 Histophilus somni 8025 rrn prokMSA_id:081519 AF549389 Histophilus somni CCUG 18779 rrn prokMSA_id:082244 AF549390 Histophilus somni CCUG 12839 rrn prokMSA_id:081866 AF549391 Histophilus somni CCUG 46775 rrn prokMSA_id:082130 AF549392 Histophilus somni CCUG 18780 rrn prokMSA_id:081142 AF549393 Histophilus somni CCUG 46774 rrn prokMSA_id:082045 AF549395 Histophilus somni CCUG 18777 rrn prokMSA_id:081661 AF549397 Histophilus somni CCUG 46771 rrn prokMSA_id:081203 AF549399 Histophilus somni CCUG 46773 rrn prokMSA_id:082382 AF549400 Histophilus somni CCUG 36158 rrn prokMSA_id:081053 AF549402 Histophilus somni 301-90 rrn prokMSA_id:081158 AF549403 Histophilus somni 189-83 rrn prokMSA_id:082188 AF549405 Histophilus somni 1062-89 rrn 2.28.3.26.19.011 OTU 1 seq prokMSA_id:086047 AF499896 clone ABLCf1 2.28.3.26.19.012 OTU 3 seqs prokMSA_id:089812 AB098612 Terrahaemophilus aromaticivorans prokMSA_id:093499 AY365450 Haemophilus parainfluenzae strain 225322 prokMSA_id:094166 AY365452 Haemophilus parainfluenzae strain 212335 2.28.3.26.19.013 OTU 1 seq prokMSA_id:091310 AY331417 Haemophilus genomosp. P1 clone P4PC_39 2.28.3.26.19.015 OTU 8 seqs prokMSA_id:017538 AF224299 Haemophilus segnis prokMSA_id:054767 AF300472 Haemophilus segnis prokMSA_id:076576 AJ534673 gamma clone S15A-MN19 prokMSA_id:092231 AY349380 Haemophilus sp. oral clone JM053 prokMSA_id:092152 AY360333 Haemophilus paraphrophilus prokMSA_id:093767 AY365447 Haemophilus segnis strain 116275 prokMSA_id:093548 AY365448 Haemophilus segnis strain 116388 prokMSA_id:093186 AY365454 Haemophilus segnis strain 53916 2.28.3.26.19.017 OTU 4 seqs prokMSA_id:049556 AF227858 str. 86355 prokMSA_id:093385 AY365449 Haemophilus aphrophilus strain 94171 prokMSA_id:093771 AY365451 Haemophilus paraphrophilus strain 218631 prokMSA_id:093543 AY365453 Haemophilus aphrophilus strain 6757 2.28.3.26.19.999 poor quality 95 seqs prokMSA_id:038748 AB028327 oral SH6 prokMSA_id:029052 AB028328 oral SH7 prokMSA_id:074744 AB028334 oral SH13 prokMSA_id:050413 AB028342 oral SH25 prokMSA_id:062094 AB064873 gamma clone:NB5A12 prokMSA_id:087607 AB099790 clone: OLDA-B8 prokMSA_id:072246 AF097808 clone 49514 prokMSA_id:032075 AF176288 Pasteurella haemolytica strain H060 prokMSA_id:034050 AF201965 Human oral AC48 prokMSA_id:067389 AF355066 Actinobacillus actinomycetemcomitans strain IDH1705 prokMSA_id:067387 AF355067 Actinobacillus actinomycetemcomitans strain SUNYab75 prokMSA_id:067388 AF355068 Actinobacillus actinomycetemcomitans strain NJ2700 prokMSA_id:067386 AF355069 Actinobacillus actinomycetemcomitans strain IDH781 prokMSA_id:067383 AF355070 Actinobacillus actinomycetemcomitans strain CU1000 prokMSA_id:067385 AF355071 Actinobacillus actinomycetemcomitans strain DF2200 prokMSA_id:067384 AF355072 Actinobacillus actinomycetemcomitans strain NJ3800 prokMSA_id:067382 AF355073 Actinobacillus actinomycetemcomitans strain NJ9500 prokMSA_id:067380 AF355074 Actinobacillus actinomycetemcomitans strain NJ9100 prokMSA_id:056439 AF355075 Actinobacillus actinomycetemcomitans strain NJ9200 prokMSA_id:067377 AF355076 Actinobacillus actinomycetemcomitans strain DF2000 prokMSA_id:067378 AF355077 Actinobacillus actinomycetemcomitans strain DF2300 prokMSA_id:067375 AF355078 Actinobacillus actinomycetemcomitans strain NJ4600 prokMSA_id:067381 AF355079 Actinobacillus actinomycetemcomitans strain NJ5000 prokMSA_id:067376 AF355080 Actinobacillus actinomycetemcomitans strain NJ6000 prokMSA_id:067379 AF355081 Actinobacillus actinomycetemcomitans strain NJ1000 prokMSA_id:067374 AF355082 Actinobacillus actinomycetemcomitans strain NJ3500 prokMSA_id:055360 AF355083 Actinobacillus actinomycetemcomitans strain NJ4500 prokMSA_id:067367 AF355084 Actinobacillus actinomycetemcomitans strain NJ5400 prokMSA_id:067369 AF355085 Actinobacillus actinomycetemcomitans strain NJ8800 prokMSA_id:067366 AF355086 Actinobacillus actinomycetemcomitans strain NJ5800 prokMSA_id:067372 AF355087 Actinobacillus actinomycetemcomitans strain JP2 prokMSA_id:067368 AF355088 Actinobacillus actinomycetemcomitans strain NJ2300 prokMSA_id:055925 AF355089 Actinobacillus actinomycetemcomitans strain NJ6700 prokMSA_id:067370 AF355090 Actinobacillus actinomycetemcomitans strain NJ7200 prokMSA_id:067371 AF355091 Actinobacillus actinomycetemcomitans strain NJ7500 prokMSA_id:067373 AF355092 Actinobacillus actinomycetemcomitans strain NJ9300 prokMSA_id:067364 AF355093 Actinobacillus actinomycetemcomitans strain NJ8400 prokMSA_id:067363 AF355094 Actinobacillus actinomycetemcomitans strain Aa307 prokMSA_id:030254 AF355095 Haemophilus aphrophilus strain NJ8700 prokMSA_id:035536 AF355096 Haemophilus aphrophilus strain NJ8300 prokMSA_id:025437 AF442049 gamma clone CD1401B3 prokMSA_id:067877 AF488676 Actinobacillus actinomycetemcomitans strain OEN12 prokMSA_id:067879 AF488677 Actinobacillus actinomycetemcomitans strain OHN45 prokMSA_id:067880 AF488678 Actinobacillus actinomycetemcomitans strain OHN22 prokMSA_id:067878 AF488679 Actinobacillus actinomycetemcomitans strain 212 prokMSA_id:067875 AF488680 Actinobacillus actinomycetemcomitans strain 301 prokMSA_id:055774 AF488681 Actinobacillus actinomycetemcomitans strain 304 prokMSA_id:067876 AF488682 Actinobacillus actinomycetemcomitans strain 310 prokMSA_id:056704 AF488683 Actinobacillus actinomycetemcomitans strain 312 prokMSA_id:082809 AF499874 clone LCTI10 prokMSA_id:065216 AF516947 Haemophilus segnis strain 051001 prokMSA_id:081921 AF549396 Histophilus somni CCUG 18778 rrn prokMSA_id:081619 AF549398 Histophilus somni CCUG 46772 rrn prokMSA_id:046128 AH001664 H.aphrophilus V3-V4-V5 variable regions segment 1 prokMSA_id:033831 AH003513 A.actinomycetemcomitans V3-V4-V5 variable regions segment 1 prokMSA_id:071207 AJ290742 Haemophilus parainfluenzae strain HK129 prokMSA_id:033798 AJ290743 Haemophilus parainfluenzae strain HK23 prokMSA_id:045505 AJ290744 Haemophilus parainfluenzae strain P1466 prokMSA_id:050003 AJ290745 Haemophilus parainfluenzae strain HK102 prokMSA_id:045062 AJ290746 Haemophilus sp. HK22 strain HK22 prokMSA_id:027120 AJ290747 Haemophilus parainfluenzae strain P1467 prokMSA_id:074468 AJ290748 Haemophilus parainfluenzae strain HK49 prokMSA_id:034299 AJ290749 Haemophilus parainfluenzae strain HK80 prokMSA_id:029031 AJ290750 Haemophilus parainfluenzae strain HK755 prokMSA_id:030386 AJ290751 Haemophilus parainfluenzae strain HK758 prokMSA_id:073032 AJ290752 Haemophilus parainfluenzae strain HK759 prokMSA_id:028574 AJ290753 Haemophilus parainfluenzae strain P1306 prokMSA_id:072382 AJ290756 Haemophilus parainfluenzae strain HK847 prokMSA_id:028084 AJ290757 Haemophilus parainfluenzae strain HK760 prokMSA_id:019668 AJ290761 Haemophilus segnis strain P1292 prokMSA_id:035451 AJ290762 Haemophilus segnis strain P1351 prokMSA_id:030107 AJ290763 Haemophilus segnis strain HK321 prokMSA_id:072509 AJ290764 Haemophilus segnis strain HK491 prokMSA_id:032132 AJ290765 Haemophilus segnis strain HK701 prokMSA_id:074483 AJ290766 Haemophilus paraphrophilus strain P1475 prokMSA_id:032151 AJ428519 isolate B11 prokMSA_id:078898 AY189632 clone EarCan105 prokMSA_id:009618 L06081 Pasteurella sp. str. Bisgaard Taxon 6. prokMSA_id:009634 L26363 Haemophilus parainfluenzae str. UNK. prokMSA_id:009629 M23302 Haemophilus aphrophilus NCTC 5906 . prokMSA_id:018219 M23303 H.aphrophilus V3-V4-V5 variable regions segment 2 prokMSA_id:009628 M23304 Haemophilus actinomycetemcomitans NCTC 9710 . prokMSA_id:025867 M23305 Actinobacillus actinomycetemcomitans V3-V4-V5 variable regions segment 2 prokMSA_id:009635 M75036 Haemophilus actinomycetemcomitans ATCC 29522. prokMSA_id:009631 M75038 Haemophilus actinomycetemcomitans ATCC 29523. prokMSA_id:009626 M75040 Haemophilus parainfluenzae str. 429 M.Pittman ATCC 7901. prokMSA_id:009637 M75041 Haemophilus aphrophilus ATCC 33389 . prokMSA_id:009624 M75042 Haemophilus paraphrophilus str. Funagli K. Zinnemann ATCC 29241 prokMSA_id:009625 M75043 Haemophilus segnis ATCC 33393 . prokMSA_id:009630 M75046 Haemophilus somnus. prokMSA_id:009627 M75081 Haemophilus parainfluenzae ATCC 33392 . prokMSA_id:009633 M75082 Haemophilus paraphrophilus str. Haywood K. Zinnemann ATCC 29242. prokMSA_id:094809 NZ_AABO020 Haemophilus somnus 129PT Hsom_9 whole genome shotgun prokMSA_id:009632 X82610 Actinobacillus sp. prokMSA_id:009622 X90833 Actinobacillus actinomycetemcomitans str. Y4. 2.28.3.27 ENTERICS_AND_RELATIVES 2384 seqs 2.28.3.27.1 BUCHNERA_SUBGROUP 53 seqs 2.28.3.27.1.001 OTU 1 seq prokMSA_id:009653 M63255 Buchnera aphidicola. 2.28.3.27.1.002 OTU 2 seqs prokMSA_id:024034 AJ296749 Buchnera aphidicola Tetraneura caerulescens prokMSA_id:009652 Y11973 Buchnera aphidicola. 2.28.3.27.1.003 OTU 1 seq prokMSA_id:009651 Z19056 Buchnera aphidicola. 2.28.3.27.1.004 OTU 2 seqs prokMSA_id:053693 AJ296750 Buchnera aphidicola Pemphigus populi prokMSA_id:009650 M63254 Buchnera aphidicola. 2.28.3.27.1.005 OTU 1 seq prokMSA_id:009649 AB013087 unnamed organism. 2.28.3.27.1.006 OTU 1 seq prokMSA_id:009648 M63252 Buchnera aphidicola. 2.28.3.27.1.007 OTU 1 seq prokMSA_id:009646 M63249 Buchnera aphidicola. 2.28.3.27.1.008 OTU 1 seq prokMSA_id:009645 M63251 Buchnera aphidicola. 2.28.3.27.1.009 OTU 8 seqs prokMSA_id:052753 AB033772 Buchnera sp. prokMSA_id:020966 AB033773 Buchnera sp. prokMSA_id:051167 AB033774 Buchnera sp. prokMSA_id:040619 AB033775 Buchnera sp. prokMSA_id:035977 AB033776 Buchnera sp. prokMSA_id:070111 AP001118 Buchnera sp. APS genomic complete segment 1/2 prokMSA_id:009644 M27039 symbiont of symbiont P of Acyrthosiphon pisum. prokMSA_id:047707 NC_002528 Buchnera sp. APS complete genome 2.28.3.27.1.010 OTU 1 seq prokMSA_id:009643 Y11972 Buchnera aphidicola. 2.28.3.27.1.011 OTU 1 seq prokMSA_id:009642 M63250 Buchnera aphidicola. 2.28.3.27.1.012 OTU 6 seqs prokMSA_id:064367 AE014100 Buchnera aphidicola str. Sg Schizaphis graminum section 25 of 57 of the complete genome prokMSA_id:009639 L18927 Buchnera aphidicola. prokMSA_id:009638 M63246 Buchnera aphidicola. prokMSA_id:009640 M63247 Buchnera aphidicola. prokMSA_id:009641 M63248 Buchnera aphidicola. prokMSA_id:064248 NC_004061 Buchnera aphidicola str. Sg Schizaphis graminum complete genome 2.28.3.27.1.013 OTU 6 seqs prokMSA_id:038168 AB064507 Buchnera aphidicola Yamatocallis tokyoensis isolate:#207 primary intracellular symbiotic prokMSA_id:040406 AB064508 Buchnera aphidicola Yamatocallis tokyoensis isolate:#317 primary intracellular symbiotic prokMSA_id:042294 AB064509 Buchnera aphidicola Yamatocallis tokyoensis isolate:#525 primary intracellular symbiotic prokMSA_id:035589 AB064510 Buchnera aphidicola Yamatocallis tokyoensis isolate:#526 primary intracellular symbiotic prokMSA_id:029368 AB064511 Buchnera aphidicola Yamatocallis tokyoensis isolate:#566 primary intracellular symbiotic prokMSA_id:017372 AB064512 Buchnera aphidicola Yamatocallis hirayamae isolate:#567 primary intracellular symbiotic 2.28.3.27.1.014 OTU 1 seq prokMSA_id:017473 AJ296748 Buchnera aphidicola Eriosoma lanuginosum 2.28.3.27.1.015 OTU 1 seq prokMSA_id:020793 AJ296751 Buchnera aphidicola Geoica urticularia 2.28.3.27.1.016 OTU 1 seq prokMSA_id:023181 AJ296747 Buchnera aphidicola Pterocomma populeum 2.28.3.27.1.017 OTU 1 seq prokMSA_id:023853 AJ296758 Buchnera aphidicola Panaphis juglandis 2.28.3.27.1.018 OTU 1 seq prokMSA_id:024924 AJ296754 Buchnera aphidicola Tuberolachnus salignus 2.28.3.27.1.019 OTU 1 seq prokMSA_id:033113 AJ296757 Buchnera aphidicola Thelaxes suberi 2.28.3.27.1.020 OTU 1 seq prokMSA_id:034972 AJ296759 Buchnera aphidicola Hoplocallis pictus 2.28.3.27.1.021 OTU 1 seq prokMSA_id:036645 AJ296753 Buchnera aphidicola Stomaphis quercus 2.28.3.27.1.022 OTU 1 seq prokMSA_id:067659 AJ417833 Buchnera sp. 2.28.3.27.1.023 OTU 1 seq prokMSA_id:041305 AJ296756 Buchnera aphidicola Lachnus roboris 2.28.3.27.1.024 OTU 3 seqs prokMSA_id:079263 AE014016 Buchnera aphidicola Baizongia pistaciae section 1 of 2 of the complete genome prokMSA_id:041602 AJ296752 Buchnera aphidicola Baizongia pistaciae prokMSA_id:079454 NC_004545 Buchnera aphidicola Baizongia pistaciae complete genome 2.28.3.27.1.025 OTU 1 seq prokMSA_id:050183 AJ296755 Buchnera aphidicola Maculolachnus submacula 2.28.3.27.1.026 OTU 1 seq prokMSA_id:052069 AF286125 Secondary endosymbiont of Psylla pyricola 2.28.3.27.1.027 OTU 1 seq prokMSA_id:054656 AF263559 Secondary endosymbiont of Cacopsylla myrthi ; intergenic spacer complete ; and 23S 2.28.3.27.1.028 OTU 1 seq prokMSA_id:060732 AF455056 clone B2 2.28.3.27.1.029 OTU 1 seq prokMSA_id:092760 AY126636 Endosymbiont of Rhynchophorus palmarum 2.28.3.27.1.030 OTU 1 seq prokMSA_id:092930 AY126632 Endosymbiont of Cosmopolites sordidus 2.28.3.27.1.999 poor quality 2 seqs prokMSA_id:067422 AF493328 clone pHS130 prokMSA_id:009647 M63253 Buchnera aphidicola. 2.28.3.27.2 ESCHERICHIA_SUBGROUP 301 seqs 2.28.3.27.2.002 OTU 11 seqs prokMSA_id:040779 AB050825 Edwardsiella hoshinae prokMSA_id:034178 AB050826 Edwardsiella ictaluri prokMSA_id:048380 AB050827 Edwardsiella tarda strain:ATCC15947 prokMSA_id:037081 AB050828 Edwardsiella tarda strain:NuF194 prokMSA_id:028203 AB050829 Edwardsiella tarda strain:Su100 prokMSA_id:022744 AB050830 Edwardsiella tarda strain:NE8003 prokMSA_id:033398 AB050831 Edwardsiella tarda strain:E381 prokMSA_id:074453 AB050832 Edwardsiella tarda strain:NB8031 prokMSA_id:070016 AB050833 Edwardsiella sp. AC8640 prokMSA_id:009737 AF015259 Edwardsiella tarda CDC 4411-68. prokMSA_id:025008 AF310622 Edwardsiella ictaluri complete 2.28.3.27.2.003 OTU 1 seq prokMSA_id:009732 AB022638 unnamed organism. 2.28.3.27.2.004 OTU 2 seqs prokMSA_id:009727 AF024608 Pantoea agglomerans str. TAC.III.94.1. prokMSA_id:009728 AF024609 clone thrips6.12. 2.28.3.27.2.005 OTU 2 seqs prokMSA_id:029821 AH000904 E.coli prokMSA_id:009720 K01056 Escherichia coli str. C600. 2.28.3.27.2.007 OTU 176 seqs prokMSA_id:009705 A14565 Escherichia coli. prokMSA_id:068956 AB035920 Escherichia coli O157:H7 hemG rrsA ileT alaT rrlA rrfA mobB mobA genes protoporphyrin oxidase protein isoleucine tRNA 1 alanine tRNA 1B 23S 5S molybdopterin-guanine dinucleotide biosynthesis protein B molybdopterin-guanine dinucleotide biosynthesis protein A complete and cds prokMSA_id:068955 AB035921 Escherichia coli O157:H7 murI rrsB gltT rrlB rrfB murB genes glutamate racemase glutamate tRNA 2 23S 5S UDP-N-acetyl enolpyruvoyl glucosamine reductase cds prokMSA_id:055655 AB035922 Escherichia coli O157:H7 yieP rrsC gltU rrlC rrfC astP trpT yifA genes hypothetical protein glutamate tRNA 2 23S 5S aspartate tRNA 1 tryptophan tRNA hypothetical protein cds prokMSA_id:068954 AB035923 Escherichia coli O157:H7 yrdA rrsD ileU alaU rrlD rrfD thrV rrfF genes transferase isoleucine tRNA 1 alanine tRNA 1B 23S 5S threonine tRNA 1 5S cds prokMSA_id:068951 AB035924 Escherichia coli O157:H7 purH rrsE gltV rrlE rrfE yjaB metA genes phosphoribosyl aminoimiddazol carboxamide formyltransferase glutamate tRNA 2 23S 5S hypothetical protein homoserine transsuccinylase and complete cds prokMSA_id:068952 AB035925 Escherichia coli O157:H7 clpB rrsG gltW rrlG rrfG kgtP genes heat shock protein glutamate tRNA 2 23S 5S alpha-ketoglutarate permease cds prokMSA_id:068953 AB035926 Escherichia coli O157:H7 yaeD rrsH ileV alaV rrlH rrfH aspU yafB genes phosphatase isoleucine tRNA 1B alanine tRNA 1B 23S 5S aspartate tRNA 1 aldose reductase complete and cds prokMSA_id:064040 AB087330 clone:CF89 prokMSA_id:057991 AB094187 clone:G-26 prokMSA_id:009671 AE000129 Escherichia coli str. K-12. prokMSA_id:048448 AE000345 Escherichia coli K12 MG1655 section 235 of 400 of the complete genome prokMSA_id:024909 AE000406 Escherichia coli K12 MG1655 section 296 of 400 of the complete genome prokMSA_id:009656 AE000452 Escherichia coli str. K-12. prokMSA_id:009725 AE000460 Escherichia coli str. K-12. prokMSA_id:009733 AE000471 Escherichia coli str. K-12. prokMSA_id:009734 AE000474 Escherichia coli str. K-12. prokMSA_id:048916 AE005174 Escherichia coli O157:H7 complete genome prokMSA_id:020554 AE005195 Escherichia coli O157:H7 EDL933 genome contig 1 of 3 section 19 of 155 prokMSA_id:070983 AE005489 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section 108 of 290 prokMSA_id:046459 AE005555 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section 174 of 290 prokMSA_id:049240 AE005607 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section 226 of 290 prokMSA_id:070434 AE005616 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section 235 of 290 prokMSA_id:046776 AE005628 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section 247 of 290 prokMSA_id:071151 AE005632 Escherichia coli O157:H7 EDL933 genome contig 3 of 3 section 251 of 290 prokMSA_id:058039 AE015055 Shigella flexneri 2a str. 301 section 18 of 412 of the complete genome prokMSA_id:055834 AE015280 Shigella flexneri 2a str. 301 section 243 of 412 of the complete genome prokMSA_id:055807 AE015342 Shigella flexneri 2a str. 301 section 305 of 412 of the complete genome prokMSA_id:058037 AE015391 Shigella flexneri 2a str. 301 section 354 of 412 of the complete genome prokMSA_id:058036 AE015399 Shigella flexneri 2a str. 301 section 362 of 412 of the complete genome prokMSA_id:058034 AE015412 Shigella flexneri 2a str. 301 section 375 of 412 of the complete genome prokMSA_id:058035 AE015415 Shigella flexneri 2a str. 301 section 378 of 412 of the complete genome prokMSA_id:076228 AE016755 Escherichia coli CFT073 section 1 of 18 of the complete genome prokMSA_id:075525 AE016764 Escherichia coli CFT073 section 10 of 18 of the complete genome prokMSA_id:076445 AE016767 Escherichia coli CFT073 section 13 of 18 of the complete genome prokMSA_id:075507 AE016769 Escherichia coli CFT073 section 15 of 18 of the complete genome prokMSA_id:076948 AE016770 Escherichia coli CFT073 section 16 of 18 of the complete genome prokMSA_id:083296 AE016978 Shigella flexneri 2a str. 2457T section 1 of 16 of the complete genome prokMSA_id:084906 AE016987 Shigella flexneri 2a str. 2457T section 10 of 16 of the complete genome prokMSA_id:083034 AE016989 Shigella flexneri 2a str. 2457T section 12 of 16 of the complete genome prokMSA_id:082658 AE016990 Shigella flexneri 2a str. 2457T section 13 of 16 of the complete genome prokMSA_id:083655 AE016991 Shigella flexneri 2a str. 2457T section 14 of 16 of the complete genome prokMSA_id:009681 AF076037 Escherichia coli. prokMSA_id:009682 AF076038 Serratia marcescens. prokMSA_id:009665 AF084835 str. KN4. prokMSA_id:017857 AF233451 Escherichia coli prokMSA_id:071660 AF253345 human infant P13I prokMSA_id:046772 AF371847 clone p-12-a5 prokMSA_id:028317 AF371848 clone p-229-o5 prokMSA_id:046170 AF371849 clone p-463-o3 prokMSA_id:043594 AF371931 clone p-4395-4Wa2 prokMSA_id:028027 AF371936 clone p-5145-2Wb3 prokMSA_id:050876 AF376439 ckncm206-F4M.1D5 prokMSA_id:033356 AF376449 ckncm216-F4M.1H4 prokMSA_id:064392 AF403733 Escherichia coli C2 prokMSA_id:072591 AF481812 clone S4D prokMSA_id:074341 AF481815 clone P6G prokMSA_id:088143 AF491892 Cf. Escherichia coli symbiont 1 of Acromyrmex octospinosus prokMSA_id:086213 AF499895 clone ABLCf4 prokMSA_id:065815 AF507520 soil clone S083 prokMSA_id:065406 AF511430 Escherichia coli prokMSA_id:062511 AF527825 Escherichia coli strain RREC III prokMSA_id:071573 AF527826 Escherichia coli strain RREC II prokMSA_id:062512 AF527827 Escherichia coli strain RREC I prokMSA_id:055592 AF530319 clone cadhufec19a01yvb prokMSA_id:061019 AF530378 clone cadhufec62c10 prokMSA_id:091643 AF530475 Escherichia fergusonii prokMSA_id:073766 AJ408984 clone HuCA37 prokMSA_id:070021 AJ409001 clone HuCB27 prokMSA_id:066566 AJ487021 amplicon H1 prokMSA_id:055738 AJ487022 amplicon H2 prokMSA_id:066560 AJ487029 amplicon H3 prokMSA_id:059486 AJ508367 Escherichia coli . isolate MBRG 2.1 prokMSA_id:059485 AJ508369 Escherichia coli . isolate MBRG 3.1 prokMSA_id:059285 AJ508775 Escherichia albertii strain LMG 20976T prokMSA_id:088442 AJ567534 clone MBMPE22 prokMSA_id:088081 AJ567540 Escherichia coli clone MBMPE19 prokMSA_id:088114 AJ567606 Escherichia coli clone MBAE62 prokMSA_id:089440 AJ567607 Escherichia coli clone MBAE64 prokMSA_id:088104 AJ567617 Escherichia coli clone MBAE104 prokMSA_id:089493 AJ575433 Shigella boydii strain CECT 583 prokMSA_id:094721 AJ583184 gamma- clone S15D-MN30 prokMSA_id:094741 AJ583185 gamma- clone S15D-MN213 prokMSA_id:043889 AP002550 Escherichia coli O157:H7 complete genome section 1/20 prokMSA_id:046645 AP002562 Escherichia coli O157:H7 complete genome section 13/20 prokMSA_id:055739 AP002564 Escherichia coli O157:H7 complete genome section 15/20 prokMSA_id:054989 AP002566 Escherichia coli O157:H7 complete genome section 17/20 prokMSA_id:051124 AP002567 Escherichia coli O157:H7 complete genome section 18/20 prokMSA_id:063595 AY043392 Escherichia coli prokMSA_id:070266 AY082448 Escherichia sp. 253b prokMSA_id:066579 AY098487 Escherichia coli isolate AK108 prokMSA_id:060872 AY135901 clone SG2-26 prokMSA_id:060855 AY135915 clone SG2-95 prokMSA_id:078209 AY171339 clone s27 prokMSA_id:079843 AY186034 Shigella sonnei strain m5 prokMSA_id:080937 AY186040 Escherichia coli strain EBI5 prokMSA_id:080563 AY186041 Escherichia coli strain MP2 prokMSA_id:090405 AY191340 Enterobacteriaceae isolate ODP1176A22X_1_B prokMSA_id:090696 AY191343 Enterobacteriaceae isolate ODP1176A22X_14_B prokMSA_id:090249 AY191349 Enterobacteriaceae isolate ODP1176A22X_4_B prokMSA_id:086639 AY214637 gamma clone SL2-1-D4 prokMSA_id:086572 AY214653 gamma clone SL2-1-B7 prokMSA_id:087733 AY268309 clone C4 small subunit prokMSA_id:090202 AY319393 Escherichia coli strain 5.2 prokMSA_id:090100 AY325737 Escherichia sp. isolate PCR amplicon RL 1489 prokMSA_id:098510 AY371269 clone Dpcom130 prokMSA_id:094971 AY373329 clone Dpcom135 prokMSA_id:095795 AY375058 clone B182 prokMSA_id:097720 AY388422 clone Adhuright84 prokMSA_id:009699 D12649 Escherichia coli =rrnH . prokMSA_id:009687 D15061 Escherichia coli str. W3110. prokMSA_id:009738 D15061 Escherichia coli. prokMSA_id:009688 D83536 Escherichia coli =rrnH . prokMSA_id:028107 E05133 coding of Escherichia coli prokMSA_id:009724 J01695 Escherichia coli =rrnB operon. prokMSA_id:009685 J01859 Escherichia coli. prokMSA_id:009702 L10328 Escherichia coli str. MG1655 =rrsC . prokMSA_id:009658 M29364 Escherichia coli =rrnG . prokMSA_id:009673 M87049 Escherichia coli str. CgSC No. 189 =rrsA. prokMSA_id:051002 NC_000913 Escherichia coli K12 complete genome prokMSA_id:049069 NC_002655 Escherichia coli O157:H7 EDL933 complete genome prokMSA_id:049908 NC_002695 Escherichia coli O157:H7 complete genome prokMSA_id:058360 NC_004337 Shigella flexneri 2a str. 301 complete genome prokMSA_id:076155 NC_004431 Escherichia coli CFT073 complete genome prokMSA_id:084714 NC_004741 Shigella flexneri 2a str. 2457T complete genome prokMSA_id:009697 U00006 Escherichia coli str. MG1655 =rrsB . prokMSA_id:009739 U00006 Escherichia coli str. MG1655. prokMSA_id:009654 U00096 Escherichia coli str. MG1655 =rrsC . prokMSA_id:009695 U00096 Escherichia coli str. MG1655 =rrsG . prokMSA_id:009690 U00096 Escherichia coli str. MG1655 =rrsB . prokMSA_id:009663 U00096 Escherichia coli str. MG1655 =rrsH . prokMSA_id:009674 U00096 Escherichia coli str. MG1655 =rrsE . prokMSA_id:009742 U00096 Escherichia coli str. MG1655 =rrsA . prokMSA_id:009717 U00096 Escherichia coli str. MG1655 =rrsD . prokMSA_id:009659 U18997 Escherichia coli =rrsD . prokMSA_id:009664 U70214 Escherichia coli. prokMSA_id:044734 U72488 Cloning vector pRNA8 complete prokMSA_id:009669 U88545 Salmonella typhi str. St111. prokMSA_id:009709 U88546 Salmonella paratyphi. prokMSA_id:009710 U88547 Salmonella paratyphi. prokMSA_id:009668 U88548 Salmonella paratyphi. prokMSA_id:009706 U90314 Salmonella blockley str. Sb1. prokMSA_id:009707 U90315 Salmonella matopeni str. Sm1. prokMSA_id:009661 U90316 Salmonella typhimurium str. Stm1. prokMSA_id:009708 U90317 Salmonella weltevreden str. sw1. prokMSA_id:009667 U90318 Salmonella enteritidis str. SE22. prokMSA_id:009713 U92192 Salmonella chingola str. Sch1. prokMSA_id:009670 U92193 Salmonella bovis subsp. morbificans str. Sbm1. prokMSA_id:009715 U92194 Salmonella waycross str. Swy1. prokMSA_id:009714 U92195 Salmonella houten str. Sh1. prokMSA_id:009712 U92196 Salmonella bareilly str. Sb1. prokMSA_id:009711 U92197 Salmonella agona str. Sa1. prokMSA_id:073514 V00348 E. coli operon rrnB encoding the . Also transfer specific Glu 23S and two open reading frames. This was obtained from the transducing phage lambda-rif-d 18 BAMHI fragment prokMSA_id:009701 V00348 Escherichia coli =rrnB operon. prokMSA_id:050713 V00350 Start of the E. coli . Also contains part of unknown reading frame prokMSA_id:009700 X80679 Shigella flexneri. prokMSA_id:009721 X80680 Shigella dysenteriae. prokMSA_id:009719 X80721 Escherichia coli str. PK3 = . prokMSA_id:009672 X80722 Escherichia coli str. PK3 =rrnB . prokMSA_id:009696 X80723 Escherichia coli str. PK3 =rrnC . prokMSA_id:009704 X80724 Escherichia coli str. Seattle 1946 ATCC 25922. prokMSA_id:009741 X80725 Escherichia coli str. U 5/41 ATCC 11775 . prokMSA_id:009698 X80726 Shigella sonnei. prokMSA_id:009691 X80727 Escherichia coli str. PK3 =rrnD . prokMSA_id:009692 X80729 Escherichia coli str. PK3 =rrnG . prokMSA_id:009677 X80730 Escherichia coli str. PK3 =rrnH . prokMSA_id:009676 X80731 Escherichia coli str. PK3. prokMSA_id:009693 X80732 Escherichia coli str. MC4100. prokMSA_id:009684 X80733 Escherichia sp. prokMSA_id:009678 X96963 Shigella flexneri str. Serovar 2a ATCC 29903 . prokMSA_id:009680 X96964 Shigella sonnei. prokMSA_id:009662 X96965 Shigella boydii. prokMSA_id:009686 X96966 Shigella dysenteriae ATCC 13313 . prokMSA_id:009660 Z83203 Hafnia alvei. prokMSA_id:009679 Z83204 Escherichia coli. prokMSA_id:009666 Z83205 Escherichia coli. 2.28.3.27.2.008 OTU 1 seq prokMSA_id:009675 AF075271 Alterococcus agarolyticus str. ADT3. 2.28.3.27.2.009 OTU 1 seq prokMSA_id:020763 M15752 Rhodobacter capsulatus showing homology to 2.28.3.27.2.010 OTU 1 seq prokMSA_id:037063 AF224858 clone Car131fc 2.28.3.27.2.011 OTU 1 seq prokMSA_id:043862 E05134 coding E.coli which was proliferated by PCR 2.28.3.27.2.012 OTU 1 seq prokMSA_id:063114 AY093468 clone MB-A2-149 2.28.3.27.2.013 OTU 1 seq prokMSA_id:070823 AF333541 clone R7 2.28.3.27.2.014 OTU 1 seq prokMSA_id:085196 AY271750 clone 2 2.28.3.27.2.015 OTU 1 seq prokMSA_id:089934 AF491893 Cf. Escherichia coli symbiont 2 of Acromyrmex octospinosus 2.28.3.27.2.016 OTU 1 seq prokMSA_id:090415 AF491894 Cf. Escherichia coli symbiont 3 of Acromyrmex octospinosus 2.28.3.27.2.999 poor quality 100 seqs prokMSA_id:062088 AB064879 gamma clone:NS4A2 prokMSA_id:075320 AB075084 clone:KCR13 prokMSA_id:074882 AB075097 clone:KSS12 prokMSA_id:076710 AB075098 clone:KSS13 prokMSA_id:075205 AB075107 clone:KSRS8 prokMSA_id:075277 AB075110 clone:KSRS12 prokMSA_id:076208 AB075115 clone:KSRS19 prokMSA_id:076321 AB075116 clone:KSR1 prokMSA_id:075346 AB075123 clone:KSR11 prokMSA_id:075391 AB075127 clone:TCS1 prokMSA_id:076589 AB075128 clone:TCS2 prokMSA_id:075682 AB075130 clone:TCS6 prokMSA_id:076979 AB075131 clone:TCS8 prokMSA_id:076256 AB075132 clone:TCS10 prokMSA_id:076226 AB075133 clone:TCS11 prokMSA_id:075423 AB075134 clone:TCS13 prokMSA_id:075215 AB075135 clone:TCS14 prokMSA_id:065253 AB075685 Escherichia coli strain:C28 prokMSA_id:065244 AB075693 Escherichia coli clone:1C4 prokMSA_id:064062 AB087302 clone:CF24 prokMSA_id:055725 AB087305 clone:CF27 prokMSA_id:087475 AB099799 clone: OLDB-A4 prokMSA_id:009730 AF058375 Escherichia Escherichia clone MT9. prokMSA_id:009726 AF070468 unnamed organism. prokMSA_id:029725 AF211252 rumen 109pARRO prokMSA_id:070646 AF253328 human infant D1A1 prokMSA_id:073250 AF253348 human infant S1G prokMSA_id:072878 AF253359 human infant N62B prokMSA_id:072036 AF317374 feedlot manure B50 prokMSA_id:073454 AF357563 mpn-isolate group 15 prokMSA_id:071727 AF371850 clone p-15-a5 prokMSA_id:025785 AF376245 ckncm012-DS12 prokMSA_id:071277 AF376270 ckncm037-B3sc.10 prokMSA_id:070074 AF376284 ckncm051-A1.11 prokMSA_id:046812 AF376319 ckncm086-A32.D10 prokMSA_id:047034 AF376336 ckncm103-B412.2D11 prokMSA_id:039081 AF376341 ckncm108-B412.2G5 prokMSA_id:041780 AF376342 ckncm109-B412.2G8 prokMSA_id:047062 AF376347 ckncm114-B52.H1 prokMSA_id:041853 AF376461 ckncm228-F4M.2F4 prokMSA_id:038462 AF376466 ckncm233-F4M.2H12 prokMSA_id:033778 AF392671 clone LBE11 prokMSA_id:031109 AF441935 gamma clone CD11D7 prokMSA_id:077372 AF477826 gamma clone AGCO30 prokMSA_id:071075 AF481814 clone P10F prokMSA_id:088196 AF491895 Cf. Escherichia coli symbiont 4 of Acromyrmex octospinosus prokMSA_id:088668 AF491896 Cf. Escherichia coli symbiont 5 of Acromyrmex octospinosus prokMSA_id:084626 AF499890 clone ABLC7 prokMSA_id:050245 AJ005541 gamma clone Clo 120 prokMSA_id:009735 AJ005648 str. Clo 1. prokMSA_id:009736 AJ005653 str. Clo 89. prokMSA_id:041567 AJ241718 microorganism clone Cal26 prokMSA_id:049673 AJ277980 Escherichia fergusonii strain WG 167 prokMSA_id:029812 AJ277981 Escherichia fergusonii strain WG 168 prokMSA_id:036850 AJ295530 rape rhizosphere wr0088 prokMSA_id:021085 AJ404540 Escherichia coli clone EC1 prokMSA_id:046186 AJ404541 Escherichia coli clone EC2 prokMSA_id:022550 AJ404542 Escherichia coli clone EC3 prokMSA_id:029873 AJ404543 Escherichia coli clone EC4 prokMSA_id:027329 AJ419083 clone kl315 prokMSA_id:055542 AJ516045 Escherichia coli strain LE/28 prokMSA_id:017766 AY006501 rumen prokMSA_id:023795 AY006523 rumen prokMSA_id:020359 AY006658 rumen prokMSA_id:052096 AY006659 rumen prokMSA_id:035346 AY006691 rumen prokMSA_id:024201 AY038420 gamma clone CD5A1 prokMSA_id:031865 AY078065 Escherichia coli serogroup O39:NM prokMSA_id:091625 AY131333 Escherichia coli prokMSA_id:060873 AY135895 clone SG2-7 prokMSA_id:086547 AY214602 gamma clone SL2-1-H8 prokMSA_id:086138 AY214686 gamma clone SL2-2-H11R prokMSA_id:082896 AY214688 gamma clone SL2-2-H6R prokMSA_id:083979 AY214693 gamma clone SL2-2-A2F prokMSA_id:086174 AY214695 gamma clone SL2-2-A7F prokMSA_id:085043 AY214906 gamma clone BAC-P25-8A prokMSA_id:083427 AY256596 DGGE band A1-2 prokMSA_id:083571 AY256598 DGGE band B1-7 prokMSA_id:083276 AY271751 clone 3 prokMSA_id:090535 AY325749 Escherichia sp. isolate PCR amplicon RL 1863 prokMSA_id:093273 AY357961 gamma cEV18 prokMSA_id:093517 AY357968 gamma cEV26 prokMSA_id:093241 AY357988 gamma cEV50 prokMSA_id:098392 AY394631 Escherichia sp. clone W2-25 prokMSA_id:022639 E05144 of a fraction prepared by a restriction enzyme HHA I from coding E.coli prokMSA_id:035681 E05160 of a fraction prepared by a restriction enzyme HAP II from coding E.coli prokMSA_id:038786 K01057 E.coli 3' end & ile-trna-1 genes prokMSA_id:009718 M25051 Escherichia coli str. A19. prokMSA_id:009740 U31490 str. S11. prokMSA_id:009729 U58272 Escherichia coli. prokMSA_id:009722 U85137 clone ACK-SA1. prokMSA_id:009655 U85138 clone ACK-SA7. prokMSA_id:009723 X72324 Escherichia coli. prokMSA_id:009703 X80728 Escherichia coli str. PK3 =rrnE . prokMSA_id:009683 X80734 Escherichia vulneris ATCC 33821 . prokMSA_id:009689 X91530 clone K15. prokMSA_id:009657 Y13250 Erwinia tracheiphila LMG 2906 . prokMSA_id:009731 Y13324 Arthrobacter sp. prokMSA_id:009716 Z47359 Escherichia coli str. 2348/69 EPEC 127:H6. prokMSA_id:009694 Z69315 str. s11. 2.28.3.27.3 S.ENTERITIDIS_SUBGROUP 325 seqs 2.28.3.27.3.008 OTU 2 seqs prokMSA_id:009746 AB004746 Enterobacter sakazakii str. Ct2 JCM 1233 . prokMSA_id:058596 AB080210 rumen clone:RE1 2.28.3.27.3.010 OTU 66 seqs prokMSA_id:009784 AB004755 Klebsiella planticola JCM 7251 . prokMSA_id:034643 AB045730 Escherichia coli strain:MPEC EX-33 prokMSA_id:042416 AB045731 Escherichia coli strain:MPEC Y-69 prokMSA_id:049321 AB045737 Citrobacter rodentium prokMSA_id:017230 AE008706 Salmonella typhimurium LT2 section 14 of 220 of the complete genome prokMSA_id:034689 AE008820 Salmonella typhimurium LT2 section 124 of 220 of the complete genome prokMSA_id:052343 AE008857 Salmonella typhimurium LT2 section 161 of 220 of the complete genome prokMSA_id:026536 AE008881 Salmonella typhimurium LT2 section 185 of 220 of the complete genome prokMSA_id:054921 AE008886 Salmonella typhimurium LT2 section 190 of 220 of the complete genome prokMSA_id:051836 AE008893 Salmonella typhimurium LT2 section 197 of 220 of the complete genome prokMSA_id:054877 AE008895 Salmonella typhimurium LT2 section 199 of 220 of the complete genome prokMSA_id:085907 AE016834 Salmonella enterica subsp. enterica serovar Typhi Ty2 section 1 of 16 of the complete genome prokMSA_id:085807 AE016842 Salmonella enterica subsp. enterica serovar Typhi Ty2 section 9 of 16 of the complete genome prokMSA_id:084433 AE016845 Salmonella enterica subsp. enterica serovar Typhi Ty2 section 12 of 16 of the complete genome prokMSA_id:086419 AE016846 Salmonella enterica subsp. enterica serovar Typhi Ty2 section 13 of 16 of the complete genome prokMSA_id:083958 AE016848 Salmonella enterica subsp. enterica serovar Typhi Ty2 section 15 of 16 of the complete genome prokMSA_id:052635 AF008580 Salmonella enterica IIIa prokMSA_id:009749 AF025363 Citrobacter rodentium CDC 1843-73 . prokMSA_id:009754 AF025364 Citrobacter sedlakii CDC 4696-86 . prokMSA_id:009785 AF025366 Citrobacter koseri CDC 8132-86. prokMSA_id:009766 AF025370 Citrobacter amalonaticus CDC 9020-77. prokMSA_id:009765 AF025371 Citrobacter farmeri CDC 2991-81 . prokMSA_id:009751 AF025372 Citrobacter koseri CDC 3613-63 . prokMSA_id:009779 AF029226 Salmonella bongori str. JEO 4162. prokMSA_id:009778 AF029227 Salmonella bongori str. 66:z41:- CIP 8233 . prokMSA_id:009757 AF057359 Salmonella thompson str. SA 90190. prokMSA_id:009782 AF057360 Salmonella gallinarum ATCC 7378. prokMSA_id:009758 AF057361 Salmonella paratyphi ATCC 9150. prokMSA_id:009759 AF057362 Salmonella paratyphi str. SARA 42. prokMSA_id:009774 AF057363 Salmonella thompson. prokMSA_id:009770 AF130890 Pantoea agglomerans str. A11. prokMSA_id:009771 AF130915 Pantoea agglomerans str. A44. prokMSA_id:009772 AF130955 Salmonella sp. prokMSA_id:009773 AF170176 Salmonella typhimurium str. SGSC1412. prokMSA_id:070231 AF208013 Enteric Group 137 prokMSA_id:070930 AF227845 Enterobacter sp. 76996 prokMSA_id:072996 AF227867 Salmonella enterica serovar Montevideo prokMSA_id:074428 AF227868 Salmonella enterica serovar Dublin prokMSA_id:040959 AF227869 Salmonella enterica serovar Typhimurium prokMSA_id:074497 AF233324 Salmonella typhimurium fragment STMD1 prokMSA_id:037413 AF332600 Salmonella enterica subsp. enterica prokMSA_id:067187 AF498639 Pantoea agglomerans isolate 1.1 prokMSA_id:041667 AJ415574 Citrobacter amalonaticus strain 0105 834 prokMSA_id:080956 AJ508303 Enterobacter cowanii strain CIP 107300 prokMSA_id:020481 AL627266 Salmonella enterica serovar Typhi Salmonella typhi strain CT18 complete chromosome; segment 2/20 prokMSA_id:065339 AL627276 Salmonella enterica serovar Typhi Salmonella typhi strain CT18 complete chromosome; segment 12/20 prokMSA_id:065335 AL627278 Salmonella enterica serovar Typhi Salmonella typhi strain CT18 complete chromosome; segment 14/20 prokMSA_id:065338 AL627279 Salmonella enterica serovar Typhi Salmonella typhi strain CT18 complete chromosome; segment 15/20 prokMSA_id:027007 AL627280 Salmonella enterica serovar Typhi Salmonella typhi strain CT18 complete chromosome; segment 16/20 prokMSA_id:065334 AL627282 Salmonella enterica serovar Typhi Salmonella typhi strain CT18 complete chromosome; segment 18/20 prokMSA_id:080116 AY186056 Salmonella enteritidis strain EBI6 prokMSA_id:080142 AY186057 Salmonella typhimurium strain EBI7 prokMSA_id:080128 AY186058 Salmonella typhimurium strain EBI8 prokMSA_id:084190 AY217654 Escherichia senegalensis prokMSA_id:087502 AY288305 Pantoea agglomerans isolate 1.3 prokMSA_id:088377 AY319394 Escherichia coli strain 5.4 prokMSA_id:091243 AY345401 G13 prokMSA_id:098643 AY379978 Salmonella sp. AHL 6 prokMSA_id:041705 NC_003197 Salmonella typhimurium LT2 complete genome prokMSA_id:086258 NC_004631 Salmonella enterica subsp. enterica serovar Typhi Ty2 complete genome prokMSA_id:009743 S77744 Salmonella enteritidis. prokMSA_id:009753 X80676 Salmonella sp. str. ATCC 9712. prokMSA_id:009781 X80677 Salmonella sofia. prokMSA_id:009769 X80681 Salmonella typhimurium ATCC 13311 . prokMSA_id:009756 Z47544 Salmonella typhi str. Ty2 ATCC 19430 . prokMSA_id:009760 Z49264 Salmonella typhimurium str. E10 NCTC 8391. 2.28.3.27.3.011 OTU 1 seq prokMSA_id:056032 AB080213 rumen clone:RE4 2.28.3.27.3.012 OTU 1 seq prokMSA_id:058600 AB080207 rumen clone:RF6 2.28.3.27.3.013 OTU 1 seq prokMSA_id:058598 AB080208 rumen clone:RF7 2.28.3.27.3.014 OTU 1 seq prokMSA_id:058589 AB080218 rumen clone:RE9 2.28.3.27.3.015 OTU 1 seq prokMSA_id:044391 AF047175 Enterobacter cloacae strain TU-7A 2.28.3.27.3.016 OTU 1 seq prokMSA_id:049969 AF224829 clone Car39fc 2.28.3.27.3.017 OTU 1 seq prokMSA_id:084547 AY217653 Grimontella senegalensis 2.28.3.27.3.018 OTU 1 seq prokMSA_id:091962 AY345582 clone GLSR-9 2.28.3.27.3.999 poor quality 249 seqs prokMSA_id:009786 AF058379 Shigella Shigella clone MT19. prokMSA_id:009767 AF102114 clone 905com. prokMSA_id:009768 AF102118 clone kw9269. prokMSA_id:009783 AF114640 str. SUR FREE. prokMSA_id:038861 AF226181 Maize root ZmrIs2AY prokMSA_id:070735 AF276989 Salmonella enterica prokMSA_id:032064 AF287039 gamma EC-I37 prokMSA_id:046825 AF376318 ckncm085-A32.C6 prokMSA_id:027297 AF415701 Salmonella enterica strain 117 serovar Agona prokMSA_id:040601 AF415702 Salmonella enterica strain 121 serovar Agona prokMSA_id:021177 AF415703 Salmonella enterica strain 123 serovar Agona prokMSA_id:037485 AF415704 Salmonella enterica strain 129 serovar Agona prokMSA_id:048605 AF415705 Salmonella enterica strain 36 serovar Agona prokMSA_id:033562 AF415706 Salmonella enterica strain 75 serovar Agona prokMSA_id:049596 AF415707 Salmonella enterica strain l16 serovar Alachua prokMSA_id:053588 AF415708 Salmonella enterica strain 68 serovar Brandenberg prokMSA_id:022188 AF415709 Salmonella enterica strain 93 serovar Cambridge prokMSA_id:017221 AF415710 Salmonella enterica strain 97 serovar Cambridge prokMSA_id:029691 AF415711 Salmonella enterica strain 106 serovar Enteritidis prokMSA_id:043725 AF415712 Salmonella enterica strain 21-1 serovar Enteritidis prokMSA_id:025370 AF415713 Salmonella enterica strain 22-1 serovar Enteritidis prokMSA_id:023145 AF415714 Salmonella enterica strain 23-1 serovar Enteritidis prokMSA_id:028385 AF415715 Salmonella enterica strain 24-1 serovar Enteritidis prokMSA_id:052164 AF415716 Salmonella enterica strain 24 serovar Enteritidis prokMSA_id:020497 AF415717 Salmonella enterica strain 25-1 serovar Enteritidis prokMSA_id:032449 AF415718 Salmonella enterica strain 26-1 serovar Enteritidis prokMSA_id:029046 AF415719 Salmonella enterica strain 27-1 serovar Enteritidis prokMSA_id:036346 AF415720 Salmonella enterica strain 28-1 serovar Enteritidis prokMSA_id:036851 AF415721 Salmonella enterica strain 29-1 serovar Enteritidis prokMSA_id:042574 AF415722 Salmonella enterica strain 30-1 serovar Enteritidis prokMSA_id:026666 AF415723 Salmonella enterica strain 33 serovar Enteritidis prokMSA_id:026482 AF415724 Salmonella enterica strain 34 serovar Enteritidis prokMSA_id:025395 AF415725 Salmonella enterica strain 4 serovar Enteritidis prokMSA_id:041328 AF415726 Salmonella enterica strain 56-1 serovar Enteritidis prokMSA_id:027893 AF415727 Salmonella enterica strain 57-1 serovar Enteritidis prokMSA_id:020515 AF415728 Salmonella enterica strain 58-1 serovar Enteritidis prokMSA_id:024652 AF415729 Salmonella enterica strain 59-1 serovar Enteritidis prokMSA_id:024174 AF415730 Salmonella enterica strain 5 serovar Enteritidis prokMSA_id:031536 AF415731 Salmonella enterica strain 60-1 serovar Enteritidis prokMSA_id:036558 AF415732 Salmonella enterica strain 98 serovar Enteritidis prokMSA_id:048720 AF415733 Salmonella enterica strain 102 serovar Hadar prokMSA_id:041392 AF415734 Salmonella enterica strain 104 serovar Hadar prokMSA_id:032763 AF415735 Salmonella enterica strain 118 serovar Hadar prokMSA_id:050599 AF415736 Salmonella enterica strain 119 serovar Hadar prokMSA_id:041085 AF415737 Salmonella enterica strain 120 serovar Hadar prokMSA_id:037818 AF415738 Salmonella enterica strain 122 serovar Hadar prokMSA_id:035968 AF415739 Salmonella enterica strain 124 serovar Hadar prokMSA_id:050282 AF415740 Salmonella enterica strain 125 serovar Hadar prokMSA_id:033708 AF415741 Salmonella enterica strain 126 serovar Hadar prokMSA_id:031926 AF415742 Salmonella enterica strain 127 serovar Hadar prokMSA_id:049430 AF415743 Salmonella enterica strain 130 serovar Hadar prokMSA_id:045108 AF415744 Salmonella enterica strain 131 serovar Hadar prokMSA_id:049145 AF415745 Salmonella enterica strain 132 serovar Hadar prokMSA_id:032253 AF415746 Salmonella enterica strain 133 serovar Hadar prokMSA_id:035521 AF415747 Salmonella enterica strain 135 serovar Hadar prokMSA_id:041196 AF415748 Salmonella enterica strain 136 serovar Hadar prokMSA_id:050906 AF415749 Salmonella enterica strain 138 serovar Hadar prokMSA_id:043214 AF415750 Salmonella enterica strain 139 serovar Hadar prokMSA_id:034831 AF415751 Salmonella enterica strain 140 serovar Hadar prokMSA_id:033262 AF415752 Salmonella enterica strain 141 serovar Hadar prokMSA_id:048641 AF415753 Salmonella enterica strain 142 serovar Hadar prokMSA_id:042191 AF415754 Salmonella enterica strain 143 serovar Hadar prokMSA_id:026689 AF415755 Salmonella enterica strain 144 serovar Hadar prokMSA_id:044888 AF415756 Salmonella enterica strain 145 serovar Hadar prokMSA_id:031411 AF415757 Salmonella enterica strain 146 serovar Hadar prokMSA_id:023896 AF415758 Salmonella enterica strain 147 serovar Hadar prokMSA_id:044195 AF415759 Salmonella enterica strain 148 serovar Hadar prokMSA_id:036589 AF415760 Salmonella enterica strain 149 serovar Hadar prokMSA_id:031501 AF415761 Salmonella enterica strain 150 serovar Hadar prokMSA_id:020623 AF415762 Salmonella enterica strain 151 serovar Hadar prokMSA_id:021354 AF415763 Salmonella enterica strain 152 serovar Hadar prokMSA_id:054919 AF415764 Salmonella enterica strain 153 serovar Hadar prokMSA_id:048028 AF415765 Salmonella enterica strain 154 serovar Hadar prokMSA_id:046456 AF415766 Salmonella enterica strain 155 serovar Hadar prokMSA_id:048189 AF415767 Salmonella enterica strain 156 serovar Hadar prokMSA_id:029689 AF415768 Salmonella enterica strain 157 serovar Hadar prokMSA_id:025445 AF415769 Salmonella enterica strain 158 serovar Hadar prokMSA_id:052964 AF415770 Salmonella enterica strain 159 serovar Hadar prokMSA_id:034917 AF415771 Salmonella enterica strain 160 serovar Hadar prokMSA_id:023830 AF415772 Salmonella enterica strain 161 serovar Hadar prokMSA_id:040730 AF415773 Salmonella enterica strain 162 serovar Hadar prokMSA_id:027217 AF415774 Salmonella enterica strain 163 serovar Hadar prokMSA_id:029490 AF415775 Salmonella enterica strain 164 serovar Hadar prokMSA_id:022085 AF415776 Salmonella enterica strain 165 serovar Hadar prokMSA_id:029131 AF415777 Salmonella enterica strain 166 serovar Hadar prokMSA_id:038109 AF415778 Salmonella enterica strain 167 serovar Hadar prokMSA_id:050605 AF415779 Salmonella enterica strain 168 serovar Hadar prokMSA_id:022717 AF415780 Salmonella enterica strain 169 serovar Hadar prokMSA_id:049204 AF415781 Salmonella enterica strain 170 serovar Hadar prokMSA_id:044050 AF415782 Salmonella enterica strain 172 serovar Hadar prokMSA_id:045696 AF415783 Salmonella enterica strain 173 serovar Hadar prokMSA_id:017165 AF415784 Salmonella enterica strain 175 serovar Hadar prokMSA_id:042075 AF415785 Salmonella enterica strain 176 serovar Hadar prokMSA_id:028441 AF415786 Salmonella enterica strain 177 serovar Hadar prokMSA_id:032686 AF415787 Salmonella enterica strain 178 serovar Hadar prokMSA_id:020929 AF415788 Salmonella enterica strain 179 serovar Hadar prokMSA_id:042283 AF415789 Salmonella enterica strain 180 serovar Hadar prokMSA_id:048322 AF415790 Salmonella enterica strain 182 serovar Hadar prokMSA_id:052268 AF415791 Salmonella enterica strain 183 serovar Hadar prokMSA_id:026529 AF415792 Salmonella enterica strain 184 serovar Hadar prokMSA_id:033450 AF415793 Salmonella enterica strain 185 serovar Hadar prokMSA_id:027367 AF415794 Salmonella enterica strain 186 serovar Hadar prokMSA_id:025825 AF415795 Salmonella enterica strain 19 serovar Hadar prokMSA_id:046992 AF415796 Salmonella enterica strain 29 serovar Hadar prokMSA_id:045565 AF415797 Salmonella enterica strain 30 serovar Hadar prokMSA_id:047506 AF415798 Salmonella enterica strain 48 serovar Hadar prokMSA_id:042964 AF415799 Salmonella enterica strain 49 serovar Hadar prokMSA_id:043175 AF415800 Salmonella enterica strain 50 serovar Hadar prokMSA_id:034185 AF415801 Salmonella enterica strain 55 serovar Hadar prokMSA_id:034004 AF415802 Salmonella enterica strain 56 serovar Hadar prokMSA_id:020082 AF415803 Salmonella enterica strain 58 serovar Hadar prokMSA_id:049220 AF415804 Salmonella enterica strain 60 serovar Hadar prokMSA_id:033512 AF415805 Salmonella enterica strain 63 serovar Hadar prokMSA_id:039599 AF415806 Salmonella enterica strain 71 serovar Hadar prokMSA_id:041210 AF415807 Salmonella enterica strain 74 serovar Hadar prokMSA_id:017823 AF415808 Salmonella enterica strain 77 serovar Hadar prokMSA_id:044402 AF415809 Salmonella enterica strain 78 serovar Hadar prokMSA_id:033678 AF415810 Salmonella enterica strain 82 serovar Hadar prokMSA_id:027194 AF415811 Salmonella enterica strain 83 serovar Hadar prokMSA_id:048556 AF415812 Salmonella enterica strain 10-1 serovar Heidelberg prokMSA_id:034719 AF415813 Salmonella enterica strain 113 serovar Heidelberg prokMSA_id:043526 AF415814 Salmonella enterica strain 12 serovar Heidelberg prokMSA_id:035479 AF415815 Salmonella enterica strain 1-1 serovar Heidelberg prokMSA_id:019129 AF415816 Salmonella enterica strain 2-1 serovar Heidelberg prokMSA_id:042502 AF415817 Salmonella enterica strain 35 serovar Heidelberg prokMSA_id:024824 AF415818 Salmonella enterica strain 3-1 serovar Heidelberg prokMSA_id:019242 AF415819 Salmonella enterica strain 49-1 serovar Heidelberg prokMSA_id:030028 AF415820 Salmonella enterica strain 4-1 serovar Heidelberg prokMSA_id:052721 AF415821 Salmonella enterica strain 50-1 serovar Heidelberg prokMSA_id:033301 AF415822 Salmonella enterica strain 57 serovar Heidelberg prokMSA_id:028669 AF415823 Salmonella enterica strain 5-1 serovar Heidelberg prokMSA_id:051197 AF415824 Salmonella enterica strain 67 serovar Heidelberg prokMSA_id:040502 AF415825 Salmonella enterica strain 7-1 serovar Heidelberg prokMSA_id:019638 AF415826 Salmonella enterica strain 8-1 serovar Heidelberg prokMSA_id:037555 AF415827 Salmonella enterica strain 9-1 serovar Heidelberg prokMSA_id:052578 AF415828 Salmonella enterica strain 9 serovar Heidelberg prokMSA_id:050222 AF415829 Salmonella enterica strain 20 serovar Haardt prokMSA_id:043044 AF415830 Salmonella enterica strain 25 serovar Indiana prokMSA_id:024459 AF415831 Salmonella enterica strain 43 serovar Infantis prokMSA_id:042083 AF415832 Salmonella enterica strain 99 serovar Johannesburg prokMSA_id:051993 AF415833 Salmonella enterica strain 11 serovar Kentucky prokMSA_id:047281 AF415834 Salmonella enterica strain 39 serovar Kentucky prokMSA_id:033257 AF415835 Salmonella enterica strain 66 serovar Kentucky prokMSA_id:047376 AF415836 Salmonella enterica strain 69 serovar Kentucky prokMSA_id:049713 AF415837 Salmonella enterica strain 17 serovar Mbandaka prokMSA_id:017220 AF415838 Salmonella enterica strain 22 serovar Mbandaka prokMSA_id:039083 AF415839 Salmonella enterica strain 27 serovar Mbandaka prokMSA_id:017192 AF415840 Salmonella enterica strain 128 serovar Newport prokMSA_id:021281 AF415841 Salmonella enterica strain 26 serovar Newport prokMSA_id:033147 AF415842 Salmonella enterica strain 31-1 serovar Newport prokMSA_id:022953 AF415843 Salmonella enterica strain 32-1 serovar Newport prokMSA_id:017988 AF415844 Salmonella enterica strain 33-1 serovar Newport prokMSA_id:044917 AF415845 Salmonella enterica strain 34-1 serovar Newport prokMSA_id:033031 AF415846 Salmonella enterica strain 35-1 serovar Newport prokMSA_id:029987 AF415847 Salmonella enterica strain 36-1 serovar Newport prokMSA_id:037787 AF415848 Salmonella enterica strain 37-1 serovar Newport prokMSA_id:038841 AF415849 Salmonella enterica strain 38-1 serovar Newport prokMSA_id:038541 AF415850 Salmonella enterica strain 39-1 serovar Newport prokMSA_id:017050 AF415851 Salmonella enterica strain 40-1 serovar Newport prokMSA_id:036202 AF415852 Salmonella enterica strain 41-1 serovar Newport prokMSA_id:045763 AF415853 Salmonella enterica strain 42-1 serovar Newport prokMSA_id:035581 AF415854 Salmonella enterica strain 76 serovar Newport prokMSA_id:020872 AF415855 Salmonella enterica strain 111 serovar Reading prokMSA_id:026585 AF415856 Salmonella enterica strain 112 serovar Reading prokMSA_id:025953 AF415857 Salmonella enterica strain 114 serovar Reading prokMSA_id:037692 AF415858 Salmonella enterica strain 115 serovar Reading prokMSA_id:051592 AF415859 Salmonella enterica strain 116 serovar Reading prokMSA_id:016868 AF415860 Salmonella enterica strain 70 serovar Saint paul prokMSA_id:022019 AF415861 Salmonella enterica strain 40 serovar Schwarzengrund prokMSA_id:048144 AF415862 Salmonella enterica strain 42 serovar Schwarzengrund prokMSA_id:019954 AF415863 Salmonella enterica strain 18 serovar Senftenberg prokMSA_id:035984 AF415864 Salmonella enterica strain 28 serovar Senftenberg prokMSA_id:048484 AF415865 Salmonella enterica strain 94 serovar Senftenberg prokMSA_id:024985 AF415866 Salmonella enterica strain 95 serovar Senftenberg prokMSA_id:023763 AF415867 Salmonella enterica strain 41 serovar Tennessee prokMSA_id:047277 AF415868 Salmonella enterica strain 107 serovar Typhimurium prokMSA_id:021497 AF415869 Salmonella enterica strain 108 serovar Typhimurium prokMSA_id:033623 AF415870 Salmonella enterica strain 11-1 serovar Typhimurium prokMSA_id:038363 AF415871 Salmonella enterica strain 12-1 serovar Typhimurium prokMSA_id:029980 AF415872 Salmonella enterica strain 13-1 serovar Typhimurium prokMSA_id:049581 AF415873 Salmonella enterica strain 14-1 serovar Typhimurium prokMSA_id:040144 AF415874 Salmonella enterica strain 15-1 serovar Typhimurium prokMSA_id:027952 AF415875 Salmonella enterica strain 15 serovar Typhimurium prokMSA_id:029150 AF415876 Salmonella enterica strain 16-1 serovar Typhimurium prokMSA_id:020910 AF415877 Salmonella enterica strain 17-1 serovar Typhimurium prokMSA_id:041322 AF415878 Salmonella enterica strain 18-1 serovar Typhimurium prokMSA_id:047740 AF415879 Salmonella enterica strain 19-1 serovar Typhimurium prokMSA_id:022967 AF415880 Salmonella enterica strain 20-1 serovar Typhimurium prokMSA_id:047541 AF415881 Salmonella enterica strain 2 serovar Typhimurium prokMSA_id:033260 AF415882 Salmonella enterica strain 31 serovar Typhimurium prokMSA_id:044465 AF415883 Salmonella enterica strain 32 serovar Typhimurium prokMSA_id:043202 AF415884 Salmonella enterica strain 47 serovar Typhimurium prokMSA_id:026690 AF415885 Salmonella enterica strain 51 serovar Typhimurium prokMSA_id:042390 AF415886 Salmonella enterica strain 51-1 serovar Typhimurium prokMSA_id:036917 AF415887 Salmonella enterica strain 52 serovar Typhimurium prokMSA_id:029753 AF415888 Salmonella enterica strain 52-1 serovar Typhimurium prokMSA_id:051497 AF415889 Salmonella enterica strain 53-1 serovar Typhimurium prokMSA_id:016910 AF415890 Salmonella enterica strain 54 serovar Typhimurium prokMSA_id:048218 AF415891 Salmonella enterica strain 54-1 serovar Typhimurium prokMSA_id:034011 AF415892 Salmonella enterica strain 55-1 serovar Typhimurium prokMSA_id:035676 AF415893 Salmonella enterica strain 59 serovar Typhimurium prokMSA_id:052366 AF415894 Salmonella enterica strain 61 serovar Typhimurium prokMSA_id:036471 AF415895 Salmonella enterica strain 62 serovar Typhimurium prokMSA_id:051713 AF415896 Salmonella enterica strain 6 serovar Typhimurium prokMSA_id:035269 AF415897 Salmonella enterica strain 7 serovar Typhimurium prokMSA_id:021334 AF415898 Salmonella enterica strain 84 serovar Typhimurium prokMSA_id:021635 AF415899 Salmonella enterica strain 85 serovar Typhimurium prokMSA_id:029666 AF415900 Salmonella enterica strain 86 serovar Typhimurium prokMSA_id:028366 AF415901 Salmonella enterica strain 87 serovar Typhimurium prokMSA_id:048369 AF415902 Salmonella enterica strain 88 serovar Typhimurium prokMSA_id:040335 AF415903 Salmonella enterica strain 89 serovar Typhimurium prokMSA_id:029083 AF415904 Salmonella enterica strain 90 serovar Typhimurium prokMSA_id:053675 AF415905 Salmonella enterica strain 91 serovar Typhimurium prokMSA_id:028418 AF415906 Salmonella enterica strain 92 serovar Typhimurium prokMSA_id:041553 AF415907 Salmonella enterica strain 44 serovar Worthington prokMSA_id:047239 AF415908 Salmonella enterica strain 101 prokMSA_id:021858 AF415909 Salmonella enterica strain 109 prokMSA_id:051629 AF415910 Salmonella enterica strain 110 prokMSA_id:052544 AF415911 Salmonella enterica strain 3 prokMSA_id:043975 AF415912 Salmonella enterica strain 53 prokMSA_id:037046 AF415913 Salmonella enterica strain 64 prokMSA_id:034837 AF415914 Salmonella enterica strain 65 prokMSA_id:036419 AF415915 Salmonella enterica strain 79 prokMSA_id:039314 AF415916 Salmonella enterica strain 80 prokMSA_id:030467 AF415917 Salmonella enterica strain 8 prokMSA_id:046755 AF448274 clone DJAT-443 prokMSA_id:064176 AF477835 prokaryote isolate DGGE Band 46-UIB 8% pond prokMSA_id:026329 AJ400564 clone G4-K19 prokMSA_id:028533 AJ400567 clone G4-K24 prokMSA_id:057699 AY119386 clone P4-12 prokMSA_id:057571 AY119439 clone AP2-13 prokMSA_id:090685 AY226819 Enterobacter sp. C1T5 prokMSA_id:090751 AY315437 Enterobacter cowanii strain CC-Ca20-2 prokMSA_id:092795 AY332756 Culex pipiens quinquefasciatus clone AP2-15 prokMSA_id:009762 D12809 Salmonella choleraesuis. prokMSA_id:009777 D12810 Salmonella dublin. prokMSA_id:009764 D12811 Salmonella enteritidis. prokMSA_id:009761 D12812 Salmonella paratyphi. prokMSA_id:009750 D12813 Salmonella typhi. prokMSA_id:009745 D12814 Salmonella typhimurium. prokMSA_id:009775 NONE Salmonella enteritidis. prokMSA_id:009780 U58229 unnamed organism. prokMSA_id:009755 X80675 Escherichia hermannii. prokMSA_id:009776 X80678 Salmonella shomron. prokMSA_id:009752 X80682 Salmonella choleraesuis subsp. choleraesuis str. serotype paratyphi prokMSA_id:009744 X80683 Salmonella give. prokMSA_id:009763 Z47360 Hafnia alvei. prokMSA_id:009747 Z77498 str. 2-100 C20. prokMSA_id:009748 Z77614 str. 2-100 C20. 2.28.3.27.4 PECTOBACTERIUM-ERWINIA_SUBGROUP 131 seqs 2.28.3.27.4.1 PCB.CAROTOVORUM_BETAVASCULORUM_SUBGROUP 62 seqs 2.28.3.27.4.1.001 OTU 3 seqs prokMSA_id:066725 AF373200 Pectobacterium chrysanthemi strain 572 ; -23S intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:061198 AF520710 Dickeya paradisiaca prokMSA_id:009802 Z96096 Brenneria paradisiaca LMG 2542 . 2.28.3.27.4.1.002 OTU 9 seqs prokMSA_id:066748 AF373173 Pectobacterium chrysanthemi strain 340 prokMSA_id:066727 AF373199 Pectobacterium chrysanthemi strain 571 ; -23S intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:073843 AF373201 Pectobacterium chrysanthemi strain 573 ; -23S intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:061200 AF520709 Erwinia chrysanthemi strain CFBP 1270 prokMSA_id:061197 AF520711 Dickeya zeae strain CFBP 2052 prokMSA_id:061196 AF520712 Dickeya dieffenbachiae prokMSA_id:043232 AJ233412 Erwinia chrysanthemi strain DSM 4610 prokMSA_id:009798 U80200 Pectobacterium chrysanthemi ATCC 11663 . prokMSA_id:009800 Z96093 Pectobacterium chrysanthemi LMG 2804 . 2.28.3.27.4.1.003 OTU 2 seqs prokMSA_id:009796 AJ233421 Leminorella grimontii DSM 5078. prokMSA_id:090280 AJ576111 Serratia sp. clone 142 2.28.3.27.4.1.006 OTU 24 seqs prokMSA_id:066749 AF373176 Pectobacterium carotovorum subsp. atrosepticum strain GSPB 1710 ; -23S intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:066746 AF373177 Pectobacterium carotovorum subsp. atrosepticum strain 196 ; -23S intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:066747 AF373178 Pectobacterium carotovorum subsp. atrosepticum strain 31 ; -23S intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:066745 AF373179 Pectobacterium carotovorum subsp. atrosepticum strain 558 ; -23S intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:066744 AF373180 Pectobacterium carotovorum subsp. atrosepticum strain 9201 ; -23S intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:066743 AF373181 Pectobacterium carotovorum subsp. atrosepticum strain 9204 ; -23S intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:066741 AF373182 Pectobacterium carotovorum subsp. atrosepticum strain 9205 ; -23S intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:073905 AF373184 Pectobacterium carotovorum subsp. betavasculorum strain 29 ; -23S intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:066732 AF373193 Pectobacterium carotovorum subsp. wasabiae strain 91 prokMSA_id:066731 AF373194 Pectobacterium carotovorum subsp. wasabiae strain 92 prokMSA_id:072670 AF373195 Pectobacterium carotovorum subsp. wasabiae strain 93 prokMSA_id:066775 AF500481 Morganella morganii subsp. morganii strain 16731 prokMSA_id:066774 AF500482 Morganella morganii subsp. morganii strain O:4 prokMSA_id:066773 AF500483 Morganella morganii subsp. morganii strain SA5622 prokMSA_id:066772 AF500484 Morganella morganii subsp. morganii strain PL69734-11 prokMSA_id:066771 AF500485 Morganella morganii subsp. morganii strain ATCC25830 prokMSA_id:066770 AF500486 Morganella morganii subsp. sibonii strain CDC1721-75 prokMSA_id:066769 AF500487 Morganella morganii subsp. sibonii strain ATCC51206 prokMSA_id:009788 AJ223408 Erwinia carotovora subsp. wasabiae ICMP 9121. prokMSA_id:086214 AJ555894 Pectobacterium atrosepticum strain CECT 314 prokMSA_id:009794 U80198 Pectobacterium carotovorum subsp. betavasculorum ATCC 43762 . prokMSA_id:009787 U80199 Pectobacterium carotovorum subsp. wasabiae str. SR 91 ATCC 43316 prokMSA_id:009790 Z96090 Pectobacterium carotovorum subsp. atrosepticum LMG 2386 . prokMSA_id:009792 Z96091 Pectobacterium carotovorum subsp. betavasculorum LMG 2466 . 2.28.3.27.4.1.007 OTU 2 seqs prokMSA_id:009789 AJ223409 Erwinia cacticida. prokMSA_id:086731 AY293739 Pectobacterium cacticida 2.28.3.27.4.1.008 OTU 5 seqs prokMSA_id:066750 AF373175 Pectobacterium chrysanthemi strain 582 prokMSA_id:072805 AF373202 Pectobacterium chrysanthemi strain 580 ; -23S intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:061202 AF520707 Dickeya dadantii prokMSA_id:061203 AF520708 Dickeya dianthicola prokMSA_id:093777 AY360397 Erwinia chrysanthemi strain S3-1 2.28.3.27.4.1.009 OTU 1 seq prokMSA_id:079588 AF465797 Baumannia cicadellinicola 2.28.3.27.4.1.999 poor quality 16 seqs prokMSA_id:009795 AB005846 clone SA7. prokMSA_id:009803 AB005855 clone FPR7. prokMSA_id:009791 AF102108 clone INV 3272com. prokMSA_id:009797 AF102124 clone 90212com. prokMSA_id:024342 AF128674 soil S0125 prokMSA_id:073466 AF245331 SA16 prokMSA_id:067188 AF498637 Pectobacterium cacticida isolate aga prokMSA_id:009799 AJ010097 Enterobacter agglomerans str. AH16. prokMSA_id:046483 AJ314673 clone slf325 prokMSA_id:064707 AJ489369 Pectobacterium sp. Lgg15.13 strain Lgg15.13 prokMSA_id:064706 AJ489370 Pectobacterium sp. Lgg15.14 strain Lgg15.14 prokMSA_id:089995 AJ576112 Serratia sp. clone 184 prokMSA_id:093816 AJ581648 gamma clone LL4 3' region prokMSA_id:009804 Z95587 str. MR30I. prokMSA_id:009793 Z96092 Erwinia cacticida LMG 2720. prokMSA_id:009801 Z96094 Pectobacterium cypripedii LMG 2657 . 2.28.3.27.4.2 ER.AMYLOVORA_SUBGROUP 69 seqs 2.28.3.27.4.2.001 OTU 1 seq prokMSA_id:009839 Z96085 Erwinia psidii LMG 7034. 2.28.3.27.4.2.002 OTU 2 seqs prokMSA_id:009838 AJ233414 Erwinia mallotivora str. AM1 DSM 4565. prokMSA_id:059997 AY131237 Erwinia papayae 2.28.3.27.4.2.010 OTU 1 seq prokMSA_id:009821 AF130971 Pantoea cedenensis str. A34. 2.28.3.27.4.2.012 OTU 41 seqs prokMSA_id:078373 AB087715 Erwinia rhapontici prokMSA_id:083333 AB099404 Erwinia sp. MB31 prokMSA_id:009823 AF024607 Pantoea agglomerans str. TAC.I.94.1. prokMSA_id:009824 AF024610 clone thrips6.4. prokMSA_id:009825 AF024611 clone thrips6.9. prokMSA_id:009826 AF024612 Pantoea agglomerans str. TAC.XII.93.8. prokMSA_id:009827 AF024613 Pantoea agglomerans str. TAC.XII.93.2. prokMSA_id:009807 AF130885 Pantoea toletana str. A4. prokMSA_id:009812 AF130903 Pantoea toletana str. A25. prokMSA_id:009819 AF130963 Pantoea toletana str. A64. prokMSA_id:009814 AF130964 Pantoea toletana str. A82. prokMSA_id:009820 AF130965 Pantoea toletana str. A89. prokMSA_id:009816 AF130968 Pantoea toletana str. A75. prokMSA_id:071495 AF140337 Erwinia amylovora strain BC200 prokMSA_id:072774 AF140338 Erwinia amylovora strain BC206 prokMSA_id:072405 AF140339 Erwinia amylovora strain BC224 prokMSA_id:070257 AF140340 Erwinia amylovora strain BC229 prokMSA_id:073185 AF140341 Erwinia amylovora strain BC2280 prokMSA_id:069975 AF141891 Erwinia amylovora strain BC199 prokMSA_id:071250 AF141893 Erwinia amylovora strain BC202 prokMSA_id:070191 AF141894 Erwinia amylovora strain BC203 prokMSA_id:073119 AF141895 Erwinia amylovora strain BC204 prokMSA_id:070168 AF141896 Erwinia amylovora strain BC205 prokMSA_id:030720 AF214133 Erwinia sp. P18G1186 prokMSA_id:020321 AF289542 Erwinia amylovora prokMSA_id:026973 AF290417 Erwinia herbicola prokMSA_id:009822 AJ001190 Erwinia persicinus LMG 2691. prokMSA_id:009834 AJ009930 Erwinia pyrifoliae str. Ep1/96. prokMSA_id:009833 AJ010485 Erwinia amylovora str. Ea1/79. prokMSA_id:009832 AJ233410 Erwinia amylovora DSM 30165 . prokMSA_id:009810 AJ233417 Erwinia rhapontici DSM 4484 . prokMSA_id:094225 AJ581925 Erwinia persicinus strain 1R3-37 prokMSA_id:096864 AJ586620 Candidatus Erwinia dacicola isolate patavina prokMSA_id:009836 L36466 Erwinia amylovora str. EL01. prokMSA_id:009831 U80195 Erwinia amylovora ATCC 15580 . prokMSA_id:009818 U80205 Erwinia persicina ATCC 35998 . prokMSA_id:009811 U80206 Erwinia rhapontici ATCC 29283 . prokMSA_id:047069 X83265 E.amylovora prokMSA_id:009830 Z96086 Erwinia persicinus LMG 11254. prokMSA_id:009805 Z96087 Erwinia rhapontici LMG 2688 . prokMSA_id:009835 Z96088 Erwinia amylovora LMG 2024 . 2.28.3.27.4.2.013 OTU 1 seq prokMSA_id:009808 AF130897 Pantoea agglomerans str. A18. 2.28.3.27.4.2.999 poor quality 23 seqs prokMSA_id:009828 AB004763 unnamed organism. prokMSA_id:009829 AF060535 Erwinia persicinus. prokMSA_id:009809 AF130910 Pantoea toletana str. A37. prokMSA_id:009813 AF130962 Pantoea agglomerans str. A43. prokMSA_id:009815 AF130966 Pantoea toletana str. A78. prokMSA_id:018573 AF287038 gamma EC-A37 prokMSA_id:019490 AF448269 clone DJAT-431 prokMSA_id:049995 AF448271 clone DJAT-436 prokMSA_id:077284 AF477825 gamma clone AGCY55 prokMSA_id:009806 AJ232789 clone TRS6. prokMSA_id:035892 AJ295692 Erwinia sp. TzT-JG-2-8 prokMSA_id:044810 AJ302025 T101 isolate T101 prokMSA_id:039413 AJ314681 clone sl1217 prokMSA_id:064726 AJ489345 Erwinia sp. Lgg10.4 strain Lgg10.4 prokMSA_id:093910 AJ581922 Erwinia rhapontici strain 1R2-14 prokMSA_id:093329 AJ581924 Erwinia persicinus strain 1R3-5 prokMSA_id:094163 AJ581926 Erwinia persicinus strain 1R3-38 prokMSA_id:093195 AJ581927 Erwinia persicinus strain 1R3-40 prokMSA_id:093411 AJ581933 Erwinia persicinus strain 1Pe1-14 prokMSA_id:094187 AJ581982 Erwinia persicinus strain 3Re3-19 prokMSA_id:048205 AY048911 Q3-6B1 prokMSA_id:009817 Y13249 Erwinia billingiae str. Billing E63 LMG 2613 . prokMSA_id:009837 Z96084 Erwinia mallotivora str. AM1 LMG 2708 . 2.28.3.27.5 CIT.BRAAKII_SUBGROUP 87 seqs 2.28.3.27.5.005 OTU 40 seqs prokMSA_id:009857 AB004748 Enterobacter gergoviae JCM 1234 . prokMSA_id:026469 AB053117 Klebsiella oxytoca prokMSA_id:078182 AB074607 gamma clone:APe4_69 prokMSA_id:077805 AB074608 gamma clone:APe2_81 prokMSA_id:044280 AF008579 Kluyvera ascorbata prokMSA_id:009841 AF025365 Citrobacter freundii CDC 621-64. prokMSA_id:009842 AF025367 Citrobacter 'genomospecies 10' CDC 4693-86. prokMSA_id:009840 AF025368 Citrobacter braakii CDC 080-58 . prokMSA_id:009843 AF025369 Citrobacter 'genomospecies 11' CDC 2970-59. prokMSA_id:009852 AF025373 Citrobacter werkmanii CDC 0876-58 . prokMSA_id:048721 AF129440 Klebsiella oxytoca prokMSA_id:009854 AF130893 Pantoea endophytica str. A14. prokMSA_id:071892 AF176559 Kluyvera ascorbata strain CDC 1058/74 prokMSA_id:071835 AF176560 Kluyvera ascorbata strain CDC 0648/74 prokMSA_id:024844 AF176562 Kluyvera sp. IAL9555/98 prokMSA_id:051193 AF176564 Kluyvera sp. IAL9558/98 prokMSA_id:072250 AF176565 Kluyvera ascorbata strain CDC 2066/78 prokMSA_id:016953 AF176566 Kluyvera ascorbata strain CDC 0556/74 prokMSA_id:071543 AF176567 Kluyvera ascorbata strain CDC 2064/78 prokMSA_id:038855 AF214639 Nitrogen-fixing CAN9B prokMSA_id:023408 AF224791 clone Car141fb prokMSA_id:048349 AF224812 clone Car84fb prokMSA_id:073097 AF253337 human infant D26-2J prokMSA_id:038155 AF423229 soil clone 144-1 prokMSA_id:033220 AF427948 clone 2A prokMSA_id:025734 AF463533 Citrobacter sp. TSA-1 prokMSA_id:009845 AJ233408 Citrobacter freundii DSM 30039. prokMSA_id:066564 AJ487024 amplicon J prokMSA_id:060698 AJ506159 Enterobacter asburiae strain MY2 prokMSA_id:060690 AJ506794 Pantoea agglomerans strain MY1 prokMSA_id:086710 AJ564736 Citrobacter youngae strain CECT 5335 prokMSA_id:092503 AJ580642 clone NN325-87 prokMSA_id:079698 AY186052 Citrobacter freundii strain m46 prokMSA_id:082119 AY217405 PTCE-T2A 11G prokMSA_id:083212 AY259630 Citrobacter freundii strain WA1 prokMSA_id:090245 AY292867 Klebsiella oxytoca isolate 552 prokMSA_id:091161 AY345447 KA55 prokMSA_id:017402 U78183 Klebsiella oxytoca prokMSA_id:026295 U78184 Klebsiella oxytoca prokMSA_id:009860 Y17655 Klebsiella oxytoca ATCC 13182 . 2.28.3.27.5.006 OTU 1 seq prokMSA_id:009847 AB018593 str. TSA. 2.28.3.27.5.007 OTU 1 seq prokMSA_id:009846 AB018592 str. JSA. 2.28.3.27.5.008 OTU 6 seqs prokMSA_id:077628 AB074622 gamma clone:APe4_2 prokMSA_id:083678 AB089243 Morganella morganii strain:JCM1672 prokMSA_id:085645 AB089244 Morganella morganii strain: ATCC35200 prokMSA_id:085693 AB089245 Morganella morganii strain:87411 prokMSA_id:085088 AB089246 Morganella morganii strain:AP28 prokMSA_id:066563 AJ487027 amplicon M 2.28.3.27.5.009 OTU 1 seq prokMSA_id:077978 AJ514439 clone ASG11 2.28.3.27.5.010 OTU 1 seq prokMSA_id:082282 AY217396 PTCE-T2A 5B 2.28.3.27.5.999 poor quality 37 seqs prokMSA_id:030426 AB064497 Citrobacter sp. AER No. 204 prokMSA_id:020386 AB064498 Citrobacter sp. AER No. 24 prokMSA_id:009858 AF102105 clone INV 4122com. prokMSA_id:009850 AF102115 clone INV 9046com. prokMSA_id:009859 AF102126 clone 5752COM. prokMSA_id:009855 AF108383 Citrobacter BL200-6 str. BL200-6. prokMSA_id:009853 AF130888 Pantoea endophytica str. A1. prokMSA_id:009844 AF143451 unnamed organism. prokMSA_id:009856 AF148971 str. STS_R2A_23. prokMSA_id:051425 AF277497 gamma SIC.7265 prokMSA_id:021433 AF284557 Hydrogen production community clone HPB-G1-4 prokMSA_id:048516 AF390953 clone TFBMB11 prokMSA_id:034958 AF427940 clone 4C prokMSA_id:035680 AF451253 Citrobacter sp. T40 prokMSA_id:029718 AF469359 Klebsiella oxytoca strain SL911 prokMSA_id:048904 AF469360 Klebsiella oxytoca strain SG4 prokMSA_id:061193 AF530068 Citrobacter sp. BinzhouCLT prokMSA_id:009848 AJ001238 Enterobacter aerogenes NCTC 10006 . prokMSA_id:076496 AJ417454 Enterobacter cloacae strain No 117 prokMSA_id:088215 AJ491779 Citrobacter sp. prokMSA_id:072645 AJ514240 Citrobacter freundii isolate MBRG 7.3 prokMSA_id:078820 AJ534848 Erwinia sp. DW1 isolate DW1 prokMSA_id:078543 AJ534858 Citrobacter sp. DW99 isolate DW99 prokMSA_id:078976 AJ534867 Citrobacter sp. DW38 isolate DW38 prokMSA_id:092905 AJ580654 clone NN325-41 prokMSA_id:092645 AJ580669 clone NN325-38 prokMSA_id:076044 AY161321 Enterobacter hormaechei isolate H2A6 prokMSA_id:081792 AY217419 MTCE-T2 8A prokMSA_id:081924 AY217445 BTCE-T2 10D prokMSA_id:084673 AY256585 DGGE band S4-14 prokMSA_id:087361 AY278485 Citrobacter freundii prokMSA_id:092172 AY310732 Enterobacter asburiae prokMSA_id:092089 AY346317 Citrobacter freundii HPC255 prokMSA_id:092493 AY346318 Citrobacter freundii HPC255 prokMSA_id:094601 AY372118 Citrobacter freundii prokMSA_id:009851 M59291 Citrobacter freundii ATCC 29935. prokMSA_id:009849 U84728 Citrobacter freundii str. Phal 6B. 2.28.3.27.6 PCB.CYPRIPEDII_SUBGROUP 6 seqs 2.28.3.27.6.001 OTU 3 seqs prokMSA_id:009864 AF076154 Erwinia cypripedii str. HeP01. prokMSA_id:009863 AJ233413 Erwinia cypripedii DSM 3873. prokMSA_id:009861 U80201 Pectobacterium cypripedii ATCC 29267 . 2.28.3.27.6.002 OTU 2 seqs prokMSA_id:095691 AY395024 gamma clone NAB20 prokMSA_id:098109 AY395027 gamma clone NAB23 2.28.3.27.6.999 poor quality 1 seq prokMSA_id:009862 U85136 clone ACK-DE70. 2.28.3.27.7 PN.AGGLOMERANS_SUBGROUP 135 seqs 2.28.3.27.7.001 OTU 1 seq prokMSA_id:009947 AJ010486 Enterobacter pyrinus KCTC 2520 . 2.28.3.27.7.006 OTU 85 seqs prokMSA_id:009873 AB004758 Pantoea ananas JCM 6986. prokMSA_id:009940 AB004759 unnamed organism. prokMSA_id:077695 AB087713 Pantoea agglomerans prokMSA_id:009908 AF130884 Pantoea agglomerans str. A123. prokMSA_id:009909 AF130886 Pantoea agglomerans str. A126. prokMSA_id:009910 AF130887 Pantoea agglomerans str. A20. prokMSA_id:009876 AF130891 Pantoea agglomerans str. A12. prokMSA_id:009877 AF130895 Pantoea agglomerans str. A16. prokMSA_id:009911 AF130896 Pantoea agglomerans str. A17. prokMSA_id:009913 AF130899 Pantoea agglomerans str. A21. prokMSA_id:009878 AF130900 Pantoea agglomerans str. A22. prokMSA_id:009879 AF130901 Pantoea agglomerans str. A23. prokMSA_id:009880 AF130904 Pantoea agglomerans str. A26. prokMSA_id:009914 AF130905 Pantoea agglomerans str. A27. prokMSA_id:009881 AF130906 Pantoea agglomerans str. A28. prokMSA_id:009915 AF130907 Pantoea agglomerans str. A29. prokMSA_id:009917 AF130912 Pantoea agglomerans str. A40. prokMSA_id:009919 AF130916 Pantoea agglomerans str. A45. prokMSA_id:009920 AF130917 Pantoea agglomerans str. A46. prokMSA_id:009921 AF130918 Pantoea agglomerans str. A47. prokMSA_id:009922 AF130919 Pantoea agglomerans str. A48. prokMSA_id:071227 AF130920 Enterobacter agglomerans strain A49 prokMSA_id:009883 AF130923 Pantoea agglomerans str. A53. prokMSA_id:009884 AF130924 Pantoea agglomerans str. A54. prokMSA_id:009923 AF130925 Pantoea agglomerans str. A55. prokMSA_id:009924 AF130926 Pantoea agglomerans str. A56. prokMSA_id:009885 AF130927 Pantoea agglomerans str. A57. prokMSA_id:009925 AF130928 Pantoea agglomerans str. A58. prokMSA_id:009926 AF130929 Pantoea agglomerans str. A59. prokMSA_id:009886 AF130930 Pantoea agglomerans str. A60. prokMSA_id:009927 AF130931 Pantoea agglomerans str. A61. prokMSA_id:009887 AF130932 Pantoea agglomerans str. A62. prokMSA_id:009888 AF130933 Pantoea agglomerans str. A63. prokMSA_id:009889 AF130934 Pantoea agglomerans str. A65. prokMSA_id:009890 AF130935 Pantoea agglomerans str. A67. prokMSA_id:009929 AF130937 Pantoea agglomerans str. A69. prokMSA_id:009930 AF130938 Pantoea agglomerans str. A70. prokMSA_id:009891 AF130939 Pantoea agglomerans str. A71. prokMSA_id:009931 AF130940 Pantoea agglomerans str. A72. prokMSA_id:009932 AF130941 Pantoea agglomerans str. A73. prokMSA_id:009933 AF130942 Pantoea agglomerans str. A74. prokMSA_id:009892 AF130943 Pantoea agglomerans str. A77. prokMSA_id:009893 AF130944 Pantoea agglomerans str. A79. prokMSA_id:009934 AF130945 Pantoea agglomerans str. A80. prokMSA_id:009894 AF130946 Pantoea agglomerans str. A81. prokMSA_id:009935 AF130947 Pantoea agglomerans str. A83. prokMSA_id:009936 AF130948 Pantoea agglomerans str. A84. prokMSA_id:009937 AF130949 Pantoea agglomerans str. A87. prokMSA_id:009895 AF130951 Pantoea agglomerans str. A91. prokMSA_id:009896 AF130952 Pantoea agglomerans str. A92. prokMSA_id:070540 AF130954 Erwinia herbicola prokMSA_id:009897 AF130961 Pantoea agglomerans str. A9. prokMSA_id:009941 AF157694 Pantoea agglomerans str. drh1. prokMSA_id:018836 AF229453 Pantoea sp. 'Cibuni media isolate 74' prokMSA_id:033792 AF348161 Enterobacter sp. IMD1260 prokMSA_id:018430 AF364844 Pantoea ananatis strain LMG 20106 prokMSA_id:047117 AF364845 Pantoea ananatis strain LMG 20105 prokMSA_id:021990 AF364846 Pantoea ananatis strain LMG 20104 prokMSA_id:051850 AF364847 Pantoea ananatis strain LMG 20103 prokMSA_id:066729 AF373196 Pantoea agglomerans strain LMG 2565 prokMSA_id:066726 AF373197 Pantoea agglomerans strain GSPB 450 prokMSA_id:066728 AF373198 Pantoea stewartii subsp. stewartii strain GSPB 2626 prokMSA_id:052387 AF451269 Pantoea sp. B232 prokMSA_id:047393 AJ233423 Pantoea agglomerans strain DSM 3493 prokMSA_id:073786 AJ251466 Pantoea agglomerans strain NCTC9381T prokMSA_id:033608 AJ295456 Rape rhizosphere tsb085 prokMSA_id:055560 AJ311838 Pantoea stewartii subsp. stewartii 23S and internal transcribed spacer 1 ITS1 strain DC283 prokMSA_id:094581 AJ583011 Pantoea agglomerans strain EPS125 prokMSA_id:095304 AJ583835 Pantoea agglomerans strain Pa850T prokMSA_id:018938 AY048885 L3-17C7 prokMSA_id:067501 AY092079 Pantoea agglomerans strain 732 prokMSA_id:055575 AY102881 clone BCM1-37B prokMSA_id:091904 AY336554 Pantoea sp. pfB25 prokMSA_id:097532 AY395010 Pantoea agglomerans prokMSA_id:095886 AY395012 Serratia marcescens prokMSA_id:009903 L24784 Pantoea agglomerans str. 26SR6-2. prokMSA_id:009904 NONE Pantoea agglomerans str. 26SR6-2. prokMSA_id:009875 U80183 Pantoea agglomerans ATCC 33261 . prokMSA_id:009869 U80196 Pantoea ananatis ATCC 33244 . prokMSA_id:009906 U80202 Pantoea agglomerans ATCC 33243 . prokMSA_id:009944 U80208 Pantoea stewartii subsp. stewartii str. SS11 ATCC 8199 . prokMSA_id:009874 U80209 Pantoea ananatis ATCC 19321 . prokMSA_id:009946 Z96080 Pantoea stewartii subsp. stewartii str. SS11 LMG 2715 . prokMSA_id:009865 Z96081 Pantoea ananatis LMG 2665 . prokMSA_id:009900 Z96082 Enterobacter agglomerans LMG 2565. 2.28.3.27.7.007 OTU 2 seqs prokMSA_id:009870 AF130967 Pantoea oleae str. A66. prokMSA_id:009871 AF130969 Pantoea oleae str. A36. 2.28.3.27.7.008 OTU 1 seq prokMSA_id:009868 AB033602 unnamed organism. 2.28.3.27.7.009 OTU 1 seq prokMSA_id:027032 AF332546 Enterobacter sp. B96 2.28.3.27.7.010 OTU 1 seq prokMSA_id:032418 AB030020 Gamma-symbiont of Antonina crawii 2.28.3.27.7.011 OTU 1 seq prokMSA_id:063942 AF476101 Secondary endosymbiont of Antonina pretiosa and 23S genes 2.28.3.27.7.012 OTU 2 seqs prokMSA_id:079290 AF465793 Baumannia cicadellinicola prokMSA_id:079577 AF465794 Baumannia cicadellinicola 2.28.3.27.7.999 poor quality 41 seqs prokMSA_id:009898 AB004757 Erwinia herbicola JCM 7000. prokMSA_id:009867 AB010617 clone ASB025. prokMSA_id:009872 AB027693 Pantoea B40 str. B40. prokMSA_id:009912 AF130898 Pantoea agglomerans str. A19. prokMSA_id:009866 AF130909 Pantoea toletana str. A33. prokMSA_id:009916 AF130911 Pantoea agglomerans str. A38. prokMSA_id:009918 AF130913 Pantoea agglomerans str. A41. prokMSA_id:009882 AF130922 Pantoea agglomerans str. A51. prokMSA_id:009928 AF130936 Pantoea agglomerans str. A68. prokMSA_id:009938 AF130953 Pantoea agglomerans str. ATTC27155 ATCC 27155 . prokMSA_id:009939 AF130970 Pantoea cedenensis str. A35. prokMSA_id:071984 AF264684 Pantoea ananas prokMSA_id:067467 AF491932 Pantoea ananatis strain IRP 413 prokMSA_id:067429 AF493316 clone pHS116 prokMSA_id:037835 AJ001239 Pantoea agglomerans 5' end strain NCTC 9381 T prokMSA_id:049548 AJ001240 Pantoea agglomerans 3' end strain NCTC 9381 T prokMSA_id:009899 AJ001241 Enterobacter sp. prokMSA_id:009942 AJ001242 Enterobacter sp. prokMSA_id:009907 AJ232874 clone LRE4. prokMSA_id:074099 AJ295423 Rape rhizosphere tsb016 prokMSA_id:017207 AJ314677 clone sl416 prokMSA_id:016556 AJ314678 clone sl1117 prokMSA_id:041387 AJ405019 A20-K2 clone A20-K2 prokMSA_id:019678 AJ405021 A20-K1 clone A20-K1 prokMSA_id:064717 AJ489355 Enterobacter sp. Lgg10.16 strain Lgg10.16 prokMSA_id:064698 AJ489380 Erwinia sp. Lgg20.9 strain Lgg20.9 prokMSA_id:094271 AJ581640 gamma clone SK3 prokMSA_id:093890 AJ581651 gamma clone SB8 5' region prokMSA_id:093595 AJ581652 gamma clone SB8 3' region prokMSA_id:075340 AY161120 Pantoea agglomerans strain ZA143 prokMSA_id:091541 AY266430 Marine SIMO-1581 prokMSA_id:091286 AY266431 Marine SIMO-1585 prokMSA_id:091862 AY266440 Marine SIMO-1593 prokMSA_id:093828 AY297784 Pantoea ananatis prokMSA_id:091365 AY336545 Pantoea sp. pfB16 prokMSA_id:091067 AY337587 Pantoea agglomerans CC-CH1-1 prokMSA_id:009905 L24785 Pantoea agglomerans str. A702. prokMSA_id:009901 NONE Pantoea agglomerans str. A702. prokMSA_id:009902 NONE Pantoea agglomerans. prokMSA_id:009945 Y13251 Pantoea stewartii subsp. indologenes LMG 2632 . prokMSA_id:009943 Z96083 Enterobacter agglomerans LMG 2660. 2.28.3.27.8 WIGGLESWORTHIA_SYMBIONT_SUBGROUP 85 seqs 2.28.3.27.8.001 OTU 1 seq prokMSA_id:009987 AF005235 str. SFr. 2.28.3.27.8.002 OTU 1 seq prokMSA_id:009986 M85269 endosymbiont of Sitophilus zeamais. 2.28.3.27.8.003 OTU 1 seq prokMSA_id:009985 M85270 symbiont of Sitophilus zeamais. 2.28.3.27.8.005 OTU 2 seqs prokMSA_id:009978 AF077608 unnamed organism. prokMSA_id:052942 AF263558 Secondary endosymbiont of Blastopsylla occidentalis ; intergenic spacer complete ; and 23S 2.28.3.27.8.006 OTU 1 seq prokMSA_id:009977 AJ011333 Yersinia sp. str. KM16. 2.28.3.27.8.008 OTU 2 seqs prokMSA_id:009973 AF022880 Wigglesworthia glossinidia. prokMSA_id:009949 L37342 endosymbiont of Glossina tachinoides. 2.28.3.27.8.009 OTU 2 seqs prokMSA_id:009972 AF022879 Wigglesworthia glossinidia. prokMSA_id:072766 L37340 Glossina austeni P-endosymbiont 2.28.3.27.8.010 OTU 2 seqs prokMSA_id:009971 AF022876 Wigglesworthia glossinidia str. colony from ILRI. prokMSA_id:009951 L37339 Wigglesworthia glossinidia. 2.28.3.27.8.011 OTU 1 seq prokMSA_id:009965 AF077607 unnamed organism. 2.28.3.27.8.012 OTU 2 seqs prokMSA_id:009963 AF022877 Wigglesworthia glossinidia. prokMSA_id:009964 AF022878 Wigglesworthia glossinidia str. field collected Kenya. 2.28.3.27.8.013 OTU 1 seq prokMSA_id:009962 AF022875 Wigglesworthia glossinidia. 2.28.3.27.8.015 OTU 5 seqs prokMSA_id:039049 AJ245591 Endosymbiont of Camponotus abdominalis clone 4-2 prokMSA_id:021535 AJ245597 Endosymbiont of Camponotus rufipes clone 13/5 prokMSA_id:091372 NC_005061 Candidatus Blochmannia floridanus complete genome prokMSA_id:009974 X92549 symbiont of Camponotus floridanus. prokMSA_id:009961 X92552 symbiont of Camponotus rufipes. 2.28.3.27.8.018 OTU 5 seqs prokMSA_id:060411 AF495758 Candidatus Blochmannia pennsylvanicus prokMSA_id:040380 AJ250715 Camponotus herculeanus endosymbiont strain USA prokMSA_id:085963 AY196850 Candidatus Blochmannia pennsylvanicus isolate Cpenn00 prokMSA_id:009953 X92550 symbiont of Camponotus herculeanus. prokMSA_id:009956 X92551 symbiont of Camponotus ligniperda. 2.28.3.27.8.019 OTU 1 seq prokMSA_id:009952 L37341 endosymbiont of Glossina brevipalpis. 2.28.3.27.8.020 OTU 1 seq prokMSA_id:009950 L37340 endosymbiont of Glossina austeni. 2.28.3.27.8.021 OTU 1 seq prokMSA_id:009948 L37343 endosymbiont of Glossina palpalis. 2.28.3.27.8.022 OTU 1 seq prokMSA_id:017213 AJ245592 Endosymbiont of Camponotus silvicola clone 5-5 2.28.3.27.8.023 OTU 2 seqs prokMSA_id:054828 AF263557 Secondary endosymbiont of cockerelli ; intergenic spacer complete ; and 23S prokMSA_id:020298 AF286127 Secondary endosymbiont of Paratrioza cockerelli 2.28.3.27.8.024 OTU 2 seqs prokMSA_id:042640 AJ245594 Endosymbiont of Camponotus castaneus clone 8/1 prokMSA_id:020928 AJ245598 Endosymbiont of Camponotus pennsylvanicus clone 14/7 2.28.3.27.8.025 OTU 1 seq prokMSA_id:027576 AF286128 Secondary endosymbiont of Psylla ?floccosa 2.28.3.27.8.026 OTU 1 seq prokMSA_id:029373 AJ245593 Endosymbiont of Camponotus sericeiventris clone 6-6 2.28.3.27.8.027 OTU 2 seqs prokMSA_id:060304 AB083058 Endosymbiont of Placobdelloides siamensis prokMSA_id:055799 AB083059 Endosymbiont of Parabdella sp. 2.28.3.27.8.028 OTU 1 seq prokMSA_id:033643 AF322016 Planococcus citri gamma- endosymbiont 2.28.3.27.8.029 OTU 1 seq prokMSA_id:036435 AB064518 Buchnera aphidicola Yamatocallis hirayamae isolate:#567 secondary intracellular symbiotic 2.28.3.27.8.030 OTU 1 seq prokMSA_id:048707 AJ245596 Endosymbiont of Camponotus balzani clone 12/1 2.28.3.27.8.031 OTU 1 seq prokMSA_id:053447 AF263560 Secondary endosymbiont of Calophya schini ; intergenic spacer complete ; and 23S 2.28.3.27.8.032 OTU 1 seq prokMSA_id:053659 AF263556 Secondary endosymbiont of Aphalaroida inermis ; intergenic spacer complete ; and 23S 2.28.3.27.8.033 OTU 1 seq prokMSA_id:063934 AF476110 Secondary endosymbiont of Vryburgia amaryllidis and 23S genes 2.28.3.27.8.034 OTU 1 seq prokMSA_id:063938 AF476106 Secondary endosymbiont of Melanococcus albizziae and 23S genes 2.28.3.27.8.035 OTU 1 seq prokMSA_id:063939 AF476100 Secondary endosymbiont of Amonostherium lichtensioides and 23S genes 2.28.3.27.8.036 OTU 2 seqs prokMSA_id:063940 AF476103 Secondary endosymbiont of Dysmicoccus brevipes and 23S genes prokMSA_id:063945 AF476104 Secondary endosymbiont of Dysmicoccus neobrevipes and 23S genes 2.28.3.27.8.037 OTU 1 seq prokMSA_id:063941 AF476105 Secondary endosymbiont of Erium globosum and 23S genes 2.28.3.27.8.038 OTU 1 seq prokMSA_id:073925 L37343 Glossina palpalis P-endosymbiont 2.28.3.27.8.039 OTU 1 seq prokMSA_id:074610 AJ245595 Endosymbiont of Camponotus socius clone 11/3 2.28.3.27.8.040 OTU 1 seq prokMSA_id:079106 AF465795 Baumannia cicadellinicola 2.28.3.27.8.041 OTU 1 seq prokMSA_id:085178 AY196851 Candidatus Blochmannia festinatus isolate Cfest14 2.28.3.27.8.042 OTU 1 seq prokMSA_id:092617 AY126639 Primary endosymbiont of Sitophilus rugicollis 2.28.3.27.8.043 OTU 1 seq prokMSA_id:092790 AY126637 Endosymbiont of Scyphophorus yuccae 2.28.3.27.8.044 OTU 1 seq prokMSA_id:092956 AY126638 Primary endosymbiont of Sitophilus granarius 2.28.3.27.8.045 OTU 1 seq prokMSA_id:093034 AY126635 Endosymbiont of Metamasius hemipterus 2.28.3.27.8.047 OTU 11 seqs prokMSA_id:095777 AF548135 Sodalis glossinidius -23S operon complete prokMSA_id:097799 AF548136 Sodalis glossinidius -23S rrnB operon complete prokMSA_id:096697 AF548137 Primary endosymbiont of Sitophilus oryzae -23S operon complete prokMSA_id:097704 AF548138 Primary endosymbiont of Sitophilus oryzae -23S rrnB operon complete prokMSA_id:095263 AF548139 Primary endosymbiont of Sitophilus oryzae -23S rrnC operon complete prokMSA_id:096731 AF548140 Primary endosymbiont of Sitophilus zeamais -23S rrnB operon complete prokMSA_id:095903 AF548142 Primary endosymbiont of Sitophilus zeamais -23S operon complete ; and insertion ISSZPE1 transposase tnpA complete cds prokMSA_id:009984 U64867 unnamed organism. prokMSA_id:009983 U64868 unnamed organism. prokMSA_id:009981 U64869 unnamed organism. prokMSA_id:009982 U64870 unnamed organism. 2.28.3.27.8.048 OTU 1 seq prokMSA_id:096496 AF548141 Primary endosymbiont of Sitophilus zeamais -23S rrnC operon complete 2.28.3.27.8.999 poor quality 16 seqs prokMSA_id:009954 AB018670 unnamed organism. prokMSA_id:009958 AB018671 unnamed organism. prokMSA_id:009966 AB018672 unnamed organism. prokMSA_id:009955 AB018673 unnamed organism. prokMSA_id:009959 AB018674 unnamed organism. prokMSA_id:009960 AB018675 unnamed organism. prokMSA_id:009967 AB018676 unnamed organism. prokMSA_id:009975 AB018678 unnamed organism. prokMSA_id:009968 AB018679 unnamed organism. prokMSA_id:009969 AB018680 unnamed organism. prokMSA_id:009970 AB018681 unnamed organism. prokMSA_id:009979 AB018682 unnamed organism. prokMSA_id:009980 AB018683 unnamed organism. prokMSA_id:009957 AF055236 clone pC2-8. prokMSA_id:036582 AF297705 prokMSA_id:009976 M99060 symbiont of secondary endosymbiont of Glossina pallidipes tsetse. 2.28.3.27.9 PCB.CAROTOVORUM_CAROTOVORUM_SUBGROUP 30 seqs 2.28.3.27.9.001 OTU 1 seq prokMSA_id:009995 U65654 unnamed organism. 2.28.3.27.9.002 OTU 1 seq prokMSA_id:009994 Z14096 str. BEV. 2.28.3.27.9.003 OTU 20 seqs prokMSA_id:072751 AF373174 Pectobacterium chrysanthemi strain GSPB 413 prokMSA_id:070490 AF373183 Pectobacterium carotovorum subsp. atrosepticum strain E1 ; -23S intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:066740 AF373185 Pectobacterium carotovorum subsp. carotovorum strain 21 ; -23S intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:066738 AF373186 Pectobacterium carotovorum subsp. carotovorum strain GSPB 2806 ; -23S intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:066739 AF373187 Pectobacterium carotovorum subsp. carotovorum strain 441 ; -23S intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:066737 AF373188 Pectobacterium carotovorum subsp. carotovorum strain E155 ; -23S intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:066736 AF373189 Pectobacterium carotovorum subsp. carotovorum strain E161 ; -23S intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:073219 AF373190 Pectobacterium carotovorum subsp. odoriferum strain 1645-1 prokMSA_id:074117 AF373191 Pectobacterium carotovorum subsp. odoriferum strain 1878 prokMSA_id:073789 AF373192 Pectobacterium carotovorum subsp. odoriferum strain 1880 prokMSA_id:066723 AF373203 Pectobacterium chrysanthemi strain GSPB 1406 ; -23S intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:009991 AJ223407 Pectobacterium carotovorum subsp. odoriferum LMG 17566 . prokMSA_id:023248 AJ233411 Erwinia carotovora strain DSM 30168 prokMSA_id:081553 AY207083 Pectobacterium carotovorum subsp. brasiliensis strain 212T prokMSA_id:082434 AY207085 Pectobacterium carotovorum subsp. brasiliensis strain 371 prokMSA_id:082259 AY207086 Pectobacterium carotovorum subsp. brasiliensis strain 8 prokMSA_id:088704 AY309068 Pectobacterium carotovorum subsp. carotovorum strain BC1 clone 1 prokMSA_id:088086 AY309069 Pectobacterium carotovorum subsp. carotovorum strain BC1 clone 2 prokMSA_id:009988 U80197 Pectobacterium carotovorum subsp. carotovorum ATCC 15713 . prokMSA_id:009989 Z96089 Pectobacterium carotovorum subsp. carotovorum LMG 2404 . 2.28.3.27.9.004 OTU 1 seq prokMSA_id:038096 AY048889 Q3-24C22 2.28.3.27.9.005 OTU 1 seq prokMSA_id:042020 AF293618 Secondary symbiont -U of Acyrthosiphon pisum rrs 2.28.3.27.9.999 poor quality 6 seqs prokMSA_id:009992 AB005822 clone FA3. prokMSA_id:009993 AF060530 Erwinia carotovora subsp. carotovora. prokMSA_id:036060 AJ314668 clone slf132 prokMSA_id:041356 AJ314672 clone slf152 prokMSA_id:082725 AY271764 Pectobacterium sp. prokMSA_id:009990 M59149 Pectobacterium carotovorum subsp. carotovorum ATCC 15713 . 2.28.3.27.10 SER.MARCESCENS_SUBGROUP 99 seqs 2.28.3.27.10.004 OTU 1 seq prokMSA_id:010021 AB031636 str. TIHP368-13. 2.28.3.27.10.008 OTU 1 seq prokMSA_id:010001 U20275 str. DP. 2.28.3.27.10.009 OTU 1 seq prokMSA_id:049871 AB031630 gamma TIHP368-08 2.28.3.27.10.012 OTU 79 seqs prokMSA_id:010038 AB031590 str. TIHP302-01. prokMSA_id:010007 AB031594 str. TIHP302-06. prokMSA_id:010008 AB031596 str. TIHP302-10. prokMSA_id:010009 AB031602 str. TIHP302-16. prokMSA_id:010010 AB031607 str. TIHP302-21. prokMSA_id:010011 AB031608 str. TIHP302-22. prokMSA_id:010012 AB031609 str. TIHP302-23. prokMSA_id:010013 AB031610 str. TIHP302-24. prokMSA_id:010014 AB031611 str. TIHP302-25. prokMSA_id:010015 AB031612 str. TIHP302-26. prokMSA_id:010016 AB031613 str. TIHP302-27. prokMSA_id:010017 AB031617 str. TIHP302-31. prokMSA_id:010018 AB031619 str. TIHP302-34. prokMSA_id:010019 AB031623 str. TIHP302-37. prokMSA_id:010024 AB031644 str. TIHP368-27. prokMSA_id:010025 AB031645 str. TIHP368-29. prokMSA_id:010026 AB031647 str. TIHP368-31. prokMSA_id:010027 AB031648 str. TIHP368-33. prokMSA_id:010028 AB031652 str. TIHP368-54. prokMSA_id:010029 AB031654 str. TIHP368-58. prokMSA_id:010030 AB031656 str. TIHP368-66. prokMSA_id:042000 AB061685 Serratia marcescens prokMSA_id:059692 AB091837 Pseudomonas fluorescens prokMSA_id:092667 AB117954 Serratia marcescens strain:HokM prokMSA_id:010032 AF124035 Serratia marcescens. prokMSA_id:010033 AF124036 Serratia marcescens. prokMSA_id:010034 AF124037 Serratia marcescens. prokMSA_id:010035 AF124038 Serratia marcescens. prokMSA_id:010036 AF124040 Serratia marcescens. prokMSA_id:010037 AF124042 Serratia marcescens. prokMSA_id:054306 AF286873 Serratia marcescens IRBG 500 prokMSA_id:041097 AF286874 Serratia marcescens IRBG 501 prokMSA_id:040499 AF289496 sheep mite Caithness 1 prokMSA_id:020073 AF289497 sheep mite Caithness 8 prokMSA_id:035882 AF289498 sheep mite Caithness 11 prokMSA_id:035445 AF289499 sheep mite Caithness 23 prokMSA_id:027869 AF289500 sheep mite Caithness 25 prokMSA_id:029399 AF289501 sheep mite Caithness 32 prokMSA_id:020981 AF289502 sheep mite Caithness 72 prokMSA_id:052644 AF389108 Serratia marcescens POXD3L100 prokMSA_id:065407 AF511431 Serratia marcescens prokMSA_id:060369 AF513469 Enterobacteriaceae PH31 prokMSA_id:062411 AF529100 gamma clone FTL260 prokMSA_id:061827 AF529337 gamma clone CLi53 prokMSA_id:061815 AF529347 gamma clone CLs114 prokMSA_id:061810 AF529354 gamma clone CLs85 prokMSA_id:061809 AF529356 gamma clone CLs91 prokMSA_id:052626 AJ132995 Serratia marcescens isolate H170 prokMSA_id:010006 AJ233431 Serratia marcescens DSM 30121 . prokMSA_id:051865 AJ296306 Serratia marcescens isolate 90-166 prokMSA_id:047092 AJ296307 Serratia marcescens isolate 98A-742 prokMSA_id:030637 AJ296308 Serratia marcescens isolate CPO14CU prokMSA_id:054081 AJ296309 Serratia marcescens isolate WO1-A prokMSA_id:016603 AJ296310 Serratia marcescens isolate ZO1-A prokMSA_id:043455 AJ297946 Serratia marcescens isolate HO1-A prokMSA_id:031283 AJ297950 Serratia marcescens isolate HO2-A prokMSA_id:046431 AJ302156 Serratia marcescens isolate RO1-A prokMSA_id:084367 AJ550467 Serratia marcescens prokMSA_id:089011 AJ576106 Serratia sp. clone 1 prokMSA_id:088134 AJ576109 Serratia sp. clone 57 prokMSA_id:063598 AY043385 Serratia marcescens strain AU664 prokMSA_id:063599 AY043386 Serratia marcescens strain AU736 prokMSA_id:056115 AY043387 Serratia marcescens strain AU1209 prokMSA_id:056472 AY043389 Serratia marcescens strain AU1388 prokMSA_id:080726 AY186053 Serratia marcescens strain m8 prokMSA_id:080914 AY193257 clone Bol80 prokMSA_id:085525 AY223838 Serratia marcescens prokMSA_id:090499 AY315458 Serratia marcescens strain CC-53 prokMSA_id:089516 AY315459 Serratia marcescens strain CC-H4-4 prokMSA_id:088386 AY321422 clone L43 prokMSA_id:091263 AY337583 Serratia marcescens CC-SB818H2a prokMSA_id:096484 AY338233 Pectobacterium sp. A2JM prokMSA_id:091374 AY345415 K2-47 prokMSA_id:097959 AY395011 Pantoea sp. NAB7 prokMSA_id:009998 U20274 str. CA. prokMSA_id:010002 U20276 str. IN. prokMSA_id:009997 U31497 str. S26. prokMSA_id:009996 U31498 str. S26r. prokMSA_id:010005 U82807 unnamed organism. 2.28.3.27.10.013 OTU 1 seq prokMSA_id:088807 AJ576108 Serratia sp. clone 48 2.28.3.27.10.999 poor quality 16 seqs prokMSA_id:010004 AB013401 str. KL13. prokMSA_id:010020 AB031627 str. TIHP368-01. prokMSA_id:010022 AB031639 str. TIHP368-20a. prokMSA_id:010023 AB031642 str. TIHP368-23. prokMSA_id:010031 AB031659 str. TIHP368-74a. prokMSA_id:025288 AF423239 soil clone 221-1 prokMSA_id:085034 AF494202 Serratia marcescens strain N9 prokMSA_id:055643 AF536220 Serratia sp. PCPTE4 prokMSA_id:089936 AJ576107 Serratia sp. clone 6 prokMSA_id:090711 AJ576110 Serratia sp. clone 75 prokMSA_id:071740 AY043388 Serratia marcescens strain AU1285 prokMSA_id:089925 AY307997 clone UB16A prokMSA_id:088486 AY315460 Serratia marcescens strain CC-YM2-1 prokMSA_id:010003 M59160 Serratia marcescens ATCC 13880 . prokMSA_id:009999 U34292 Guhaiyinggella guhaiyingii str. Gu1. prokMSA_id:010000 U34364 Guhaiyinggella guhaiyingii str. Gu1. 2.28.3.27.11 KLEBSIELLA_SUBGROUP 491 seqs 2.28.3.27.11.1 ENB.AEROGENES 6 seqs 2.28.3.27.11.1.001 OTU 4 seqs prokMSA_id:010039 AB004750 Enterobacter aerogenes JCM 1235 . prokMSA_id:085372 AB099402 Enterobacter aerogenes prokMSA_id:080213 AY186051 Enterobacter aerogenes strain m43 prokMSA_id:080379 AY186054 Enterobacter aerogenes strain m9 2.28.3.27.11.1.999 poor quality 2 seqs prokMSA_id:010040 AJ001237 Enterobacter aerogenes NCTC 10006 . prokMSA_id:088887 AY315444 Enterobacter aerogenes strain CC-88017 2.28.3.27.11.2 ENB.ASBURIAE_SUBGROUP 337 seqs 2.28.3.27.11.2.001 OTU 1 seq prokMSA_id:010115 AJ233424 Pragia fontium DSM 5563. 2.28.3.27.11.2.003 OTU 1 seq prokMSA_id:010113 AB021400 Pseudomonas flectens ATCC 12775. 2.28.3.27.11.2.008 OTU 1 seq prokMSA_id:010085 AJ232240 str. SS-Unknown-1129. 2.28.3.27.11.2.011 OTU 1 seq prokMSA_id:030259 AF224820 clone Car94rb 2.28.3.27.11.2.012 OTU 1 seq prokMSA_id:036938 AF448276 clone DJAT-286 2.28.3.27.11.2.014 OTU 148 seqs prokMSA_id:010075 AB004691 Pantoea agglomerans str. ATTC27155 JCM 1236 . prokMSA_id:010064 AB004744 Enterobacter asburiae str. 1497-78 JCM 6051 . prokMSA_id:010092 AB004747 Enterobacter intermedius str. Gavini E 86 JCM 1238 . prokMSA_id:010048 AB004749 Enterobacter amnigenus JCM 1237 . prokMSA_id:010108 AB004754 Klebsiella oxytoca JCM 1665 . prokMSA_id:036730 AB049108 Enterobacter sp. B509 prokMSA_id:065355 AB086230 Cedecea neteri prokMSA_id:078010 AB087714 Raoultella terrigena prokMSA_id:078082 AB089115 gamma clone:Rs-M74 prokMSA_id:087277 AB097173 Pantoea sp. J14 prokMSA_id:077919 AB098582 Enterobacter sp. TUT1014 prokMSA_id:095231 AB114268 Enterobacter sp. B901-2 prokMSA_id:051158 AF005656 Gamma MS-1 complete prokMSA_id:041110 AF047174 Enterobacter cloacae strain TRC-322 prokMSA_id:010041 AF047187 Kluyvera cochleae str. S3/1-49 ATCC 51609 . prokMSA_id:053771 AF126102 Enterobacter sp. 3-45 prokMSA_id:050412 AF126103 Enterobacter sp. 16-31 prokMSA_id:010079 AF130892 Pantoea endophytica str. A13. prokMSA_id:010097 AF130894 Pantoea agglomerans str. A15. prokMSA_id:010081 AF130914 Pantoea endophytica str. A42. prokMSA_id:010100 AF130956 Pantoea endophytica str. A3. prokMSA_id:010101 AF130957 Pantoea A5 str. A5. prokMSA_id:010082 AF130958 Pantoea endophytica str. A6. prokMSA_id:010102 AF130960 Pantoea agglomerans str. A8. prokMSA_id:071205 AF150700 Elbe River snow isolate Iso1aneu prokMSA_id:010088 AF157688 Pantoea agglomerans str. 86350. prokMSA_id:010087 AF157695 Enterobacter cloacae str. drh3. prokMSA_id:027763 AF199029 Pantoea agglomerans prokMSA_id:040460 AF224856 clone Car128fc prokMSA_id:025928 AF226178 Maize root ZmrIs1AY prokMSA_id:045264 AF227832 Pantoea sp. 57917 prokMSA_id:073465 AF227860 Pantoea sp. 57916 prokMSA_id:043233 AF310217 Enterobacter intermedius prokMSA_id:031147 AF310218 Kluyvera cryocrescens prokMSA_id:049488 AF310219 Kluyvera ascorbata prokMSA_id:071572 AF319525 Klebsiella oxytoca prokMSA_id:049498 AF321020 Pantoea agglomerans prokMSA_id:017144 AF364934 clone clL70b prokMSA_id:050084 AF371851 clone p-2009-s959-5 prokMSA_id:040056 AF371852 clone p-2172-s959-3 prokMSA_id:020393 AF390083 Klebsiella oxytoca strain W-6 prokMSA_id:071762 AF394538 Pantoea sp. P101 strain P101 prokMSA_id:064270 AF394539 Pantoea sp. P102 strain P102 prokMSA_id:038659 AF395913 Enterobacter aerogenes complete prokMSA_id:032947 AF403720 Gamma MPD-79 prokMSA_id:074266 AF417870 Pantoea sp. YSS/2001-2 prokMSA_id:038852 AF423223 soil clone 1389-1 prokMSA_id:053373 AF423250 soil clone 336-1 prokMSA_id:034251 AF423262 soil clone 431-1 prokMSA_id:070171 AF423283 soil clone 624-1 prokMSA_id:073497 AF423294 soil clone 816-1 prokMSA_id:082917 AF493976 Cedecea davisae DSM 4568 prokMSA_id:066783 AF500319 Enterobacter sp. PD12 prokMSA_id:065397 AF511434 Enterobacter cloacae prokMSA_id:056537 AF513468 Enterobacteriaceae PH29 prokMSA_id:091515 AF530476 Escherichia vulneris prokMSA_id:060352 AF534191 clone Caf57 prokMSA_id:060351 AF534193 clone Caf17 prokMSA_id:060334 AF534207 clone Phe11 prokMSA_id:060332 AF534210 clone Phe17 prokMSA_id:060328 AF534213 clone Phe50 prokMSA_id:058294 AF543283 Klebsiella oxytoca strain ChDC OS31 prokMSA_id:058286 AF543296 Klebsiella oxytoca strain ChDC OS46 prokMSA_id:010103 AJ002811 Pantoea sp. str. R8. prokMSA_id:010050 AJ233400 Buttiauxella agrestis DSM 4586. prokMSA_id:010051 AJ233401 Buttiauxella brennerae DSM 9396. prokMSA_id:010052 AJ233402 Buttiauxella ferragutiae DSM 9390. prokMSA_id:010053 AJ233403 Buttiauxella gaviniae DSM 9393. prokMSA_id:010054 AJ233404 Buttiauxella izardii DSM 9397. prokMSA_id:010055 AJ233405 Buttiauxella noackiae DSM 9401. prokMSA_id:010056 AJ233406 Buttiauxella warmboldiae DSM 9404. prokMSA_id:010066 AJ233437 Tatumella ptyseos DSM 5000. prokMSA_id:041679 AJ252606 Rhizosphere soil isolate RSI-39 prokMSA_id:037028 AJ252740 Potato plant root clone RC-III-94 prokMSA_id:071494 AJ276393 Leclercia adecarboxylata strain LBV 449 prokMSA_id:051811 AJ277977 Leclercia adecarboxylata strain WG 184 prokMSA_id:022764 AJ277978 Leclercia adecarboxylata strain WG 162 prokMSA_id:072374 AJ288156 Erwinia sp. isolate SK-30-7 prokMSA_id:074207 AJ293683 Buttiauxella sp. LBV 449 prokMSA_id:069815 AJ293684 Buttiauxella agrestis strain S3/3-203 prokMSA_id:073164 AJ293685 Buttiauxella agrestis strain CDC 1176-81T ATCC 33320T prokMSA_id:072860 AJ293686 Buttiauxella agrestis strain S3/3-162 prokMSA_id:069978 AJ293687 Buttiauxella noackiae strain BR 626 prokMSA_id:070049 AJ293689 Buttiauxella noackiae strain NSW11T ATCC 51607T prokMSA_id:032605 AJ302154 Enterobacteriaceae sp. JM965 isolate JM965 prokMSA_id:034327 AJ308467 Enterobacter sp. 22 isolate 22 prokMSA_id:026797 AJ318112 gamma clone BIci26 prokMSA_id:072866 AJ489826 Enterobacteriaceae CF01Ent-1 isolate CF01Ent-1 prokMSA_id:080910 AJ508301 Enterobacter kobei strain CIP 105566 prokMSA_id:080575 AJ508302 Enterobacter hormaechei strain CIP 103441 prokMSA_id:059496 AJ508359 Enterobacter asburiae . isolate MBRG 1.6 prokMSA_id:059494 AJ508361 Klebsiella oxytoca . isolate MBRG 1.3 prokMSA_id:078535 AJ534868 Klebsiella sp. DW40 isolate DW40 prokMSA_id:095192 AJ583836 Pantoea agglomerans strain Pa4842 prokMSA_id:063597 AY043390 Morganella morganii prokMSA_id:063596 AY043391 Klebsiella pneumoniae prokMSA_id:071282 AY082447 Enterobacter sp. 253a prokMSA_id:056056 AY133084 gamma clone ccslm2118 prokMSA_id:076458 AY150697 Klebsiella oxytoca prokMSA_id:076238 AY154517 earthworm intestine clone ew45 prokMSA_id:075524 AY154518 earthworm intestine clone ew48 prokMSA_id:076782 AY154530 earthworm intestine clone ew69 prokMSA_id:075790 AY154544 earthworm intestine clone lw23 prokMSA_id:079824 AY186050 Enterobacter cloacae strain m39 prokMSA_id:095853 AY186083 clone LB1B7 small subunit prokMSA_id:078585 AY189628 clone EarCan101 prokMSA_id:079014 AY189629 Pantoea sp. clone EarCan102 prokMSA_id:084051 AY230763 Enterobacter sp. 2002-2301161 prokMSA_id:088833 AY292868 Klebsiella oxytoca isolate 432 prokMSA_id:088927 AY292870 Klebsiella oxytoca isolate 233 prokMSA_id:088309 AY292871 Klebsiella oxytoca isolate 566 prokMSA_id:089160 AY297755 Enterobacter sp. Fma prokMSA_id:089355 AY315436 Enterobacter amnigenus strain CC-UF2 prokMSA_id:089265 AY315449 Pantoea agglomerans strain CC-88172 prokMSA_id:090077 AY315450 Pantoea agglomerans strain CC-88166 prokMSA_id:088228 AY315451 Pantoea agglomerans strain CC-88169 prokMSA_id:089434 AY315452 Pantoea agglomerans strain CC-88023 prokMSA_id:088063 AY315453 Pantoea agglomerans strain CC-88132 prokMSA_id:089222 AY321378 clone H30 prokMSA_id:088898 AY321418 clone S29 prokMSA_id:088498 AY322149 Enterobacteriaceae CCBAU 81249 prokMSA_id:092687 AY332755 Culex pipiens quinquefasciatus clone AP2-13 prokMSA_id:091670 AY344368 clone K2-30-35 prokMSA_id:091327 AY344378 clone K2-30-20 prokMSA_id:091042 AY345398 G2 prokMSA_id:091222 AY345452 KA13 prokMSA_id:091567 AY345541 clone LWSR-26 prokMSA_id:091557 AY345547 H3 prokMSA_id:091628 AY345576 clone GLB-2 prokMSA_id:091184 AY345580 clone GLBR-67 prokMSA_id:091733 AY345581 clone GLS5 prokMSA_id:094946 AY369139 Klebsiella pneumoniae prokMSA_id:097695 AY395007 Pseudomonas sp. NAB3 prokMSA_id:097130 AY395008 Enterobacter sp. NAB4 prokMSA_id:097987 AY395009 Enterobacter sp. NAB5 prokMSA_id:098251 AY395025 gamma clone NAB21 prokMSA_id:096624 AY395026 Pseudomonas sp. clone NAB22 prokMSA_id:098379 AY395280 VA-S-4 prokMSA_id:010114 U81672 clone vadinBB56. prokMSA_id:010057 Y07650 Kluyvera ascorbata ATCC 14236. prokMSA_id:010104 Y07651 Kluyvera cryocrescens ATCC 14239. prokMSA_id:010093 Y07652 Kluyvera cryocrescens str. 21g. prokMSA_id:010109 Y17660 Klebsiella oxytoca str. 5725y. prokMSA_id:010110 Y17661 Klebsiella oxytoca str. 5884. prokMSA_id:010112 Y17664 Klebsiella sp. str. BEC441. prokMSA_id:010077 Y17665 Enterobacter cloacae str. Nr. 3. prokMSA_id:010042 Z96077 Enterobacter nimipressuralis LMG 10245 . prokMSA_id:010095 Z96078 Enterobacter cancerogenus LMG 2693 . 2.28.3.27.11.2.015 OTU 1 seq prokMSA_id:080483 AF489427 Baumannia cicadellinicola ; tRNA-Glu complete ; and 23S 2.28.3.27.11.2.016 OTU 1 seq prokMSA_id:085714 AY136147 Symbiont of Eulachnus pallidus 2.28.3.27.11.2.017 OTU 1 seq prokMSA_id:086519 AJ550468 Enterobacter sp. CC1 2.28.3.27.11.2.018 OTU 1 seq prokMSA_id:089002 AJ577099 Enterobacter sp. clone 121 2.28.3.27.11.2.019 OTU 1 seq prokMSA_id:089550 AJ577102 Enterobacter sp. clone 176 2.28.3.27.11.2.020 OTU 1 seq prokMSA_id:089729 AJ577094 Enterobacter sp. clone 25 2.28.3.27.11.2.999 poor quality 178 seqs prokMSA_id:010122 AB005873 clone SRS4. prokMSA_id:010117 AB018677 unnamed organism. prokMSA_id:010106 AB018684 unnamed organism. prokMSA_id:010084 AB027695 Klebsiella cf. planticola B43 str. B43. prokMSA_id:010105 AB030920 Pantoea agglomerans str. IEGN2. prokMSA_id:010062 AB031618 str. TIHP302-33. prokMSA_id:023694 AB042417 Vestimentiferan symbiont TW-1 prokMSA_id:071741 AB081580 Enterobacteriaceae str. A46 prokMSA_id:087227 AB099791 clone: OLDA-E9 prokMSA_id:010068 AF010119 unnamed organism. prokMSA_id:010069 AF010121 unnamed organism. prokMSA_id:010049 AF055809 str. Tomales Bay wh clear. prokMSA_id:010045 AF060531 Kluyvera cryocrescens. prokMSA_id:010061 AF060532 Enterobacter amnigenus. prokMSA_id:010044 AF060537 Enterobacter amnigenus str. Q3-25-6. prokMSA_id:010060 AF060977 Enterobacter amnigenus str. Q3-25-6. prokMSA_id:010067 AF083604 str. P43. prokMSA_id:010094 AF096615 str. BSR32. prokMSA_id:042832 AF102104 3224pcr prokMSA_id:010107 AF102106 clone 4114comI. prokMSA_id:010070 AF102109 clone 3263com. prokMSA_id:043016 AF102111 5751pcr prokMSA_id:010118 AF102112 clone 9061com. prokMSA_id:010071 AF102116 clone 9035COM. prokMSA_id:054686 AF102120 5725 prokMSA_id:010072 AF102121 clone 5682re. prokMSA_id:010119 AF102122 clone 4143com. prokMSA_id:010073 AF102123 clone 4131com. prokMSA_id:010120 AF102125 clone 90211com. prokMSA_id:010078 AF130889 Pantoea endophytica str. A10. prokMSA_id:010098 AF130902 Pantoea endophytica str. A24. prokMSA_id:010080 AF130908 Pantoea endophytica str. A32. prokMSA_id:010099 AF130921 Pantoea endophytica str. A50. prokMSA_id:010083 AF130959 Pantoea agglomerans str. A7. prokMSA_id:037271 AF210718 clone SSB4 prokMSA_id:021540 AF224817 clone Car91fb prokMSA_id:050017 AF226229 maize root Zmrc205 prokMSA_id:071336 AF227846 Pantoea sp. 77000 prokMSA_id:072485 AF253377 human infant L4dI prokMSA_id:027602 AF270955 clone IAFR406 prokMSA_id:034049 AF283539 Enterobacterium EA61 prokMSA_id:041779 AF297470 Enterobacter intermedius prokMSA_id:023843 AF299365 Enterobacter cancerogenus prokMSA_id:024795 AF299366 Enterobacter sp. isolate #3 prokMSA_id:049440 AF322029 Buttiauxella brennerae prokMSA_id:028303 AF376339 ckncm106-B412.2F3 prokMSA_id:032987 AF390951 clone TFBMH1 prokMSA_id:040961 AF390952 clone TFBMF5 prokMSA_id:026504 AF390954 clone TFBMH12 prokMSA_id:022502 AF392670 clone LBB12 prokMSA_id:066593 AF400089 clone P1a4-5 prokMSA_id:066590 AF400093 clone P1a4-32 prokMSA_id:045061 AF400103 Tb3-AH prokMSA_id:027762 AF406657 Enterobacter cloacae strain A5-B25 prokMSA_id:037054 AF406683 Enterobacter amnigenus strain B15 prokMSA_id:027373 AF406686 Enterobacter amnigenus strain B18 prokMSA_id:043836 AF423210 soil clone 11-1 prokMSA_id:043817 AF423247 soil clone 3-1 prokMSA_id:020683 AF440521 Klebsiella oxytoca strain E8 prokMSA_id:023545 AF441299 PAH-contaminated sludge PB-4 prokMSA_id:049044 AF441300 PAH-contaminated sludge PB-5 prokMSA_id:027483 AF451273 Enterobacteriaceae str. D15 prokMSA_id:030813 AF469361 Klebsiella oxytoca strain SL781 prokMSA_id:017713 AF469362 Klebsiella oxytoca strain SG12 prokMSA_id:063679 AF522928 clone 7g6 prokMSA_id:063674 AF522931 clone 7g14 prokMSA_id:072664 AF530276 Enterobacter sp. S4-27 prokMSA_id:022022 AH006108 Enterobacter amnigenus isolate Q3-25-6 and genes prokMSA_id:010090 AJ001245 Enterobacter cloacae NCTC 10005. prokMSA_id:010043 AJ005871 clone TRS11. prokMSA_id:010089 AJ010096 Enterobacter agglomerans str. AH16. prokMSA_id:010076 AJ232799 clone TRE13. prokMSA_id:041800 AJ252714 Potato plant root clone RC-III-20 prokMSA_id:042121 AJ252726 Potato plant root clone RC-III-63 prokMSA_id:019205 AJ276651 Enterobacter cancerogenus strain ep4 prokMSA_id:036147 AJ276652 Enterobacter cancerogenus strain ep5 prokMSA_id:026278 AJ277979 Escherichia hermannii strain WG 163 prokMSA_id:048378 AJ277982 Leclercia sp. WG 185 strain WG 185 prokMSA_id:017052 AJ278346 Klebsiella oxytoca strain BO-1 prokMSA_id:072385 AJ293688 Buttiauxella noackiae strain BR 489 prokMSA_id:034428 AJ295393 Rape rhizosphere M9030 prokMSA_id:024999 AJ309973 Enterobacter sp. dtb33 prokMSA_id:025320 AJ314679 clone s13 prokMSA_id:034142 AJ314680 clone s16 prokMSA_id:076888 AJ318902 Buttiauxella warmboldiae strain AG15 prokMSA_id:075846 AJ318908 Enterobacter asburiae strain AG23 prokMSA_id:050185 AJ409156 Pantoea sp. strain dtb93 prokMSA_id:043578 AJ415572 Enterobacter cloacae strain 0103 906 prokMSA_id:077036 AJ417450 Enterobacter hormaechei subsp. O'Harae strain ATCC 49162T prokMSA_id:076293 AJ417451 Enterobacter hormaechei subsp. nov. O'Harae strain No 1 prokMSA_id:076281 AJ417452 Enterobacter hormaechei subsp. Grimontii strain No 114 prokMSA_id:076157 AJ417453 Enterobacter hormaechei subsp. Grimontii strain No 116 prokMSA_id:076703 AJ417455 Enterobacter hormaechei subsp. Grimontii strain No 118 prokMSA_id:075705 AJ417456 Enterobacter cloacae strain No 119 prokMSA_id:076851 AJ417457 Enterobacter cloacae strain No 124 prokMSA_id:075811 AJ417458 Enterobacter hormaechei subsp. Grimontii strain No 125 prokMSA_id:076390 AJ417459 Enterobacter hormaechei subsp. Grimontii strain No 126 prokMSA_id:075368 AJ417460 Enterobacter cloacae strain No 128 prokMSA_id:076871 AJ417461 Enterobacter hormaechei subsp. Grimontii strain No 130 prokMSA_id:076840 AJ417462 Enterobacter hormaechei subsp. O'Harae strain No 131 prokMSA_id:075365 AJ417463 Enterobacter hormaechei subsp. O'Harae strain No 157 prokMSA_id:076041 AJ417464 Enterobacter hormaechei subsp. O'Harae strain No 158 prokMSA_id:076016 AJ417465 Enterobacter hormaechei subsp. O'Harae strain No 17 prokMSA_id:076239 AJ417466 Enterobacter hormaechei subsp. O'Harae strain No 18 prokMSA_id:077234 AJ417467 Enterobacter cloacae strain No 19 prokMSA_id:076985 AJ417468 Enterobacter cloacae strain No 24 prokMSA_id:076364 AJ417469 Enterobacter cloacae strain No 25 prokMSA_id:076998 AJ417470 Enterobacter cloacae strain No 28 prokMSA_id:075879 AJ417471 Enterobacter hormaechei subsp. O'Harae strain No 30 prokMSA_id:075952 AJ417472 Enterobacter hormaechei subsp. O'Harae strain No 32 prokMSA_id:076845 AJ417473 Enterobacter hormaechei subsp. Grimontii strain No 34 prokMSA_id:077060 AJ417474 Enterobacter cloacae strain No 36 prokMSA_id:076276 AJ417475 Enterobacter hormaechei subsp. O'Harae strain No 40 prokMSA_id:075539 AJ417476 Enterobacter hormaechei subsp. O'Harae strain No 5 prokMSA_id:076011 AJ417477 Enterobacter asburiae strain 501R3 prokMSA_id:074890 AJ417478 Enterobacter hormaechei subsp. O'Harae strain No 6 prokMSA_id:074916 AJ417479 Enterobacter hormaechei subsp. O'Haraei strain No 8 prokMSA_id:077269 AJ417480 Enterobacter cloacae strain No 89 prokMSA_id:075379 AJ417481 Enterobacter cloacae strain No 90 prokMSA_id:075159 AJ417482 Enterobacter asburiae strain E6 prokMSA_id:076476 AJ417483 Enterobacter asburiae strain ATCC 35953 prokMSA_id:077261 AJ417484 Enterobacter cloacae strain ATCC 13047T prokMSA_id:076309 AJ417485 Enterobacter dissolvens strain ATCC 23373 prokMSA_id:064733 AJ489336 Enterobacter sp. Lgg5.6 strain Lgg5.6 prokMSA_id:064728 AJ489343 Enterobacter sp. Lgg10.2 strain Lgg10.2 prokMSA_id:062615 AJ504503 isolate P1CN36 prokMSA_id:056535 AJ516043 Enterobacter sp. B2/69 strain B2/69 prokMSA_id:078709 AJ534851 Enterobacter sp. DW143a1 isolate DW143a1 prokMSA_id:078749 AJ534854 Enterobacter sp. DW56 isolate DW56 prokMSA_id:089792 AJ550283 Klebsiella sp. TK44 isolate TK44 prokMSA_id:087816 AJ564061 Enterobacter sp. S23 prokMSA_id:090612 AJ577095 Enterobacter sp. clone 26 prokMSA_id:089230 AJ577096 Enterobacter sp. clone 47 prokMSA_id:088194 AJ577097 Enterobacter sp. clone 50 prokMSA_id:089927 AJ577100 Enterobacter sp. clone 128 prokMSA_id:089149 AJ577101 Enterobacter sp. clone 157 prokMSA_id:092997 AJ580652 clone NN325-31 prokMSA_id:093427 AJ581653 gamma clone LL2 5' region prokMSA_id:093290 AJ581654 gamma clone LL2 3' region prokMSA_id:093319 AJ581655 gamma clone LL3 5' region prokMSA_id:093476 AJ581656 gamma clone LL3 3' region prokMSA_id:039916 AY039431 Soil S74D1 prokMSA_id:044318 AY039436 Soil S86M1 prokMSA_id:049822 AY039443 Earthworm cast C7M1 prokMSA_id:020590 AY048905 L11-20hw3 prokMSA_id:063554 AY117578 Kluyvera sp. DV48 prokMSA_id:057588 AY119421 clone AP1-17 prokMSA_id:057584 AY119425 clone AP1-28 prokMSA_id:057585 AY119426 clone AP1-31 prokMSA_id:080527 AY191237 Pantoea sp. B37 prokMSA_id:079816 AY191238 Enterobacter sp. B41 prokMSA_id:080866 AY191239 Enterobacter sp. B24a prokMSA_id:080285 AY191240 Enterobacter sp. B24b prokMSA_id:083260 AY266350 Leclercia adecarboxylata prokMSA_id:087710 AY269192 Yokenella regensburgei prokMSA_id:089548 AY292869 Klebsiella oxytoca isolate 412 prokMSA_id:093617 AY297783 Enterobacter cloacae strain MS 354 prokMSA_id:094037 AY297791 Enterobacter cloacae strain MS 436 prokMSA_id:092620 AY310730 Enterobacter cancerogenus prokMSA_id:092409 AY310731 Enterobacter cloacae prokMSA_id:089096 AY315435 Pantoea agglomerans strain CC-88191 prokMSA_id:093213 AY357965 gamma cEV22 prokMSA_id:092282 AY359835 gamma clone cEIII41 prokMSA_id:093396 AY361951 clone P8-NTA-5 prokMSA_id:010123 D63592 clone UN106. prokMSA_id:010063 D63612 clone UN34. prokMSA_id:010047 D63639 clone UN92. prokMSA_id:010074 L43508 str. MS-1. prokMSA_id:010091 U31492 str. S13. prokMSA_id:010116 U33121 Klebsiella pneumoniae str. UN. prokMSA_id:010121 U39556 Enterobacter sp. prokMSA_id:010059 U63900 Pseudomonas fluorescens str. TMI 32059 Tottori Mycological prokMSA_id:010065 U65705 str. 101.3.37. prokMSA_id:010058 U65710 str. 18.37.BG.2. prokMSA_id:010086 U65720 Enterobacter cloacae ATCC 13047. prokMSA_id:010046 X70783 Cocos nucifera coconut palm -- chloroplast. prokMSA_id:010096 X91531 str. clone group K16. prokMSA_id:010111 Y17667 Klebsiella oxytoca str. i128-94. 2.28.3.27.11.3 K.PLANTICOLA_SUBGROUP 44 seqs 2.28.3.27.11.3.001 OTU 35 seqs prokMSA_id:035041 AB004756 Klebsiella ornithinolytica prokMSA_id:084971 AB099400 Raoultella planticola strain:4131 prokMSA_id:086319 AB099403 Raoultella planticola strain:ATCC 43176 prokMSA_id:086680 AB099407 Raoultella planticola strain:8433 prokMSA_id:010134 AF047186 Kluyvera georgiana str. CDC enteric ATCC 51603 . prokMSA_id:038339 AF129441 Klebsiella ornithinolytica strain ATCC 31898 prokMSA_id:021806 AF129442 Klebsiella terrigena strain ATCC 33257T prokMSA_id:025616 AF129443 Klebsiella planticola strain ATCC 33531T prokMSA_id:042955 AF129444 Klebsiella trevisanii strain ATCC 33558T prokMSA_id:010132 AF175281 Klebsiella Cd-1 str. Cd-1. prokMSA_id:070064 AF176561 Kluyvera sp. IAL9556/98 prokMSA_id:035654 AF176563 Kluyvera sp. IAL9557/98 prokMSA_id:073261 AF181574 Klebsiella planticola prokMSA_id:024848 AF214640 Nitrogen-fixing CANF3 prokMSA_id:066321 AF506999 Br-23 prokMSA_id:066315 AF507001 Br-z2 prokMSA_id:065398 AF511435 Serratia fonticola prokMSA_id:074012 AJ251467 Klebsiella ornithinolytica strain JCM6096T prokMSA_id:065238 AJ278447 Klebsiella sp. strain Sc20 prokMSA_id:059490 AJ508364 Klebsiella planticola . isolate MBRG 1.1 prokMSA_id:090762 AY292872 Klebsiella sp. 141 prokMSA_id:089886 AY292873 Raoultella terrigena isolate m 5 prokMSA_id:090598 AY292874 Raoultella terrigena isolate m 30 prokMSA_id:090188 AY292875 Raoultella terrigena isolate m 19 prokMSA_id:088569 AY315446 Raoultella ornithinolytica strain CC-88161 prokMSA_id:095287 AY395281 VA-S-13 prokMSA_id:049258 U78182 Klebsiella ornithinolytica prokMSA_id:010127 X93215 Klebsiella planticola DSM 3069 . prokMSA_id:010131 X93216 Klebsiella planticola str. DR3. prokMSA_id:010124 Y17658 Klebsiella terrigena ATCC 33257 . prokMSA_id:010126 Y17659 Klebsiella planticola ATCC 33531 . prokMSA_id:010128 Y17662 Klebsiella ornithinolytica str. 590681. prokMSA_id:010129 Y17663 Klebsiella planticola str. 7444. prokMSA_id:010130 Y17666 Klebsiella ornithinolytica str. FSK9555. prokMSA_id:010125 Y17670 Klebsiella terrigena str. SW4. 2.28.3.27.11.3.002 OTU 1 seq prokMSA_id:063943 AF476099 Secondary endosymbiont of Australicoccus grevilleae and 23S genes 2.28.3.27.11.3.003 OTU 1 seq prokMSA_id:066319 AF507000 Br-35 2.28.3.27.11.3.004 OTU 1 seq prokMSA_id:077839 AB074626 gamma clone:APe2_50 2.28.3.27.11.3.999 poor quality 6 seqs prokMSA_id:075147 AF539644 Klebsiella sp. Ni3 prokMSA_id:087319 AJ564107 Klebsiella sp. ABR11 strain ABR11 prokMSA_id:052798 AY039424 Earthworm cast C4D1 prokMSA_id:087286 AY278486 Raoultella ornithinolytica prokMSA_id:094216 AY363386 Klebsiella sp. rennanqilfy18 prokMSA_id:010133 U46932 clone AI111. 2.28.3.27.11.4 K.PNEUMONIAE_SUBGROUP 104 seqs 2.28.3.27.11.4.004 OTU 1 seq prokMSA_id:037741 AF214641 Nitrogen-fixing CC262C 2.28.3.27.11.4.005 OTU 1 seq prokMSA_id:043351 AF352384 Klebsiella pneumoniae 2.28.3.27.11.4.007 OTU 63 seqs prokMSA_id:010135 AB004752 Serratia liquefaciens JCM 1245 . prokMSA_id:010153 AB004753 Klebsiella pneumoniae subsp. pneumoniae JCM 1662 . prokMSA_id:076366 AB072699 Klebsiella pneumoniae prokMSA_id:044304 AB074192 Klebsiella sp. HL1 prokMSA_id:077675 AB088049 Citrobacter sp. VA53 prokMSA_id:093671 AB111105 Core-2 prokMSA_id:010157 AF009168 Klebsiella pneumoniae str. S1650. prokMSA_id:010158 AF009169 Klebsiella pneumoniae subsp. rhinoscleromatis NCTC 5046. prokMSA_id:010159 AF009170 Klebsiella pneumoniae subsp. ozaenae str. I436. prokMSA_id:010160 AF009171 Calymmatobacterium granulomatis. prokMSA_id:010139 AF010251 Calymmatobacterium granulomatis str. KH 22. prokMSA_id:010138 AF010252 Calymmatobacterium granulomatis str. KH 6. prokMSA_id:010137 AF010253 Calymmatobacterium granulomatis str. KH 34. prokMSA_id:010155 AF076033 Klebsiella pneumoniae. prokMSA_id:032663 AF130981 Klebsiella pneumoniae prokMSA_id:020148 AF130982 Klebsiella pneumoniae subsp. ozaenae prokMSA_id:032480 AF130983 Klebsiella pneumoniae subsp. rhinoscleromatis prokMSA_id:070927 AF150693 Elbe River snow isolate Iso12 prokMSA_id:070895 AF150721 Elbe River snow isolate SRB1 prokMSA_id:028200 AF221601 Klebsiella sp. ES14.2 prokMSA_id:046009 AF221602 Klebsiella sp. KGA prokMSA_id:029091 AF221603 Klebsiella sp. KG1 prokMSA_id:071955 AF228918 Klebsiella pneumoniae subsp. pneumoniae prokMSA_id:071139 AF228919 Klebsiella pneumoniae subsp. ozaenae prokMSA_id:072626 AF228920 Klebsiella pneumoniae prokMSA_id:073579 AF250285 Klebsiella singaporensis LX3 prokMSA_id:073034 AF250286 Klebsiella singaporensis LX21 prokMSA_id:021665 AF290494 sheep mite Welshpool 31 prokMSA_id:072445 AF290495 sheep mite Welshpool 24 prokMSA_id:037558 AF390084 Klebsiella pneumoniae strain DM-5 prokMSA_id:064272 AF394537 Klebsiella pneumoniae strain 342 prokMSA_id:044635 AF453251 Klebsiella pneumoniae prokMSA_id:073274 AF511429 Klebsiella pneumoniae prokMSA_id:061063 AF530333 clone cadhufec20a11yvb prokMSA_id:027939 AJ233420 Klebsiella pneumoniae strain DSM 30104 prokMSA_id:070560 AJ251469 Enterobacter cloacae strain ATCC13047T prokMSA_id:059276 AJ508695 Klebsiella pneumoniae isolate MBRG 4.15 prokMSA_id:063980 AY114159 Klebsiella pneumoniae prokMSA_id:075948 AY161048 Klebsiella pneumoniae prokMSA_id:076128 AY161052 Enterobacter dissolvens prokMSA_id:077150 AY167970 Swine manure 37-11 prokMSA_id:079833 AY186049 Klebsiella pneumoniae strain m38 prokMSA_id:082926 AY217655 Klebsiella senegalensis prokMSA_id:086686 AY217656 Klebsiella milletis prokMSA_id:089119 AY292865 Klebsiella pneumoniae isolate 521 prokMSA_id:089511 AY292866 Klebsiella pneumoniae isolate 1053 prokMSA_id:088810 AY297753 Klebsiella pneumoniae isolate Isb prokMSA_id:090603 AY302437 Klebsiella oxytoca strain NG14 prokMSA_id:088579 AY315438 Enterobacter dissolvens strain CC-CTS-3 prokMSA_id:089083 AY315447 Klebsiella pneumoniae strain CC-88170 prokMSA_id:089354 AY315454 Pantoea agglomerans strain CC-88155 prokMSA_id:010150 U31075 Klebsiella sp. str. zmmo. prokMSA_id:010154 U31076 Klebsiella sp. str. zmvsy. prokMSA_id:010136 U32868 Klebsiella sp. str. zlmy. prokMSA_id:010143 X87276 Klebsiella pneumoniae. prokMSA_id:010144 X93214 Klebsiella pneumoniae DSM 30102. prokMSA_id:010145 Y07649 Klebsiella pneumoniae str. sk. prokMSA_id:010142 Y17654 Klebsiella pneumoniae subsp. ozaenae ATCC 11296 . prokMSA_id:010151 Y17656 Klebsiella pneumoniae subsp. pneumoniae ATCC 13883 . prokMSA_id:010148 Y17657 Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 . prokMSA_id:010149 Y17668 Klebsiella pneumoniae str. Klebs313. prokMSA_id:010152 Y17669 Klebsiella pneumoniae str. Klebs919. prokMSA_id:010140 Z96079 Enterobacter dissolvens LMG 2683 . 2.28.3.27.11.4.008 OTU 1 seq prokMSA_id:080244 AY193157 clone BTM43 2.28.3.27.11.4.009 OTU 2 seqs prokMSA_id:085780 AY136149 Secondary symbiont -U of Macrosiphum euphorbiae clone Arizona 2001 prokMSA_id:085993 AY136150 Secondary symbiont -U of Macrosiphum euphorbiae clone Arizona 1999 2.28.3.27.11.4.010 OTU 1 seq prokMSA_id:087727 AJ564058 Klebsiella sp. M4112 2.28.3.27.11.4.011 OTU 1 seq prokMSA_id:090743 AY327170 clone ZB107 2.28.3.27.11.4.999 poor quality 34 seqs prokMSA_id:010161 AB012208 Klebsiella sp. str. kpu 001. prokMSA_id:087042 AB099723 clone: OLDC-C12 prokMSA_id:087609 AB099803 clone: OLDC-A3 prokMSA_id:088030 AB099804 clone: OLDC-A7 prokMSA_id:010147 AF106616 Klebsiella pneumoniae str. BL200-3. prokMSA_id:042011 AF144323 Klebsiella pneumoniae 5' prokMSA_id:050167 AF144324 Klebsiella pneumoniae 3' prokMSA_id:010146 AF175621 clone WJGRT-81. prokMSA_id:031750 AF181899 clone 0d/1 prokMSA_id:071505 AF276988 Enterobacter cloacae 2783 prokMSA_id:019330 AF440522 Klebsiella pneumoniae strain E1 prokMSA_id:017606 AF448272 clone DJAT-440 prokMSA_id:063678 AF522927 clone 7g5 prokMSA_id:063675 AF522933 clone 8g11 prokMSA_id:038319 AH009269 Klebsiella pneumoniae strain CJF-003 prokMSA_id:010141 AJ001236 Enterobacter cloacae NCTC 10005. prokMSA_id:066201 AJ278106 Klebsiella sp. strain RS1 prokMSA_id:033962 AJ413197 Klebsiella pneumoniae strain A13a prokMSA_id:060689 AJ506796 Klebsiella sp. B2-1 prokMSA_id:087899 AJ564056 Klebsiella sp. Ck-1 prokMSA_id:076232 AY161050 Klebsiella sp. CC-88028 prokMSA_id:074977 AY161051 Klebsiella sp. CC-88037 prokMSA_id:088181 AY226815 Klebsiella sp. 6A2 prokMSA_id:089708 AY226816 Klebsiella sp. VI prokMSA_id:086308 AY256601 DGGE band S4-10 prokMSA_id:084318 AY256602 DGGE band S4-20 prokMSA_id:085830 AY256603 DGGE band S4-22 prokMSA_id:087560 AY291290 Klebsiella pneumoniae strain 542 prokMSA_id:094182 AY297785 Enterobacter asburiae prokMSA_id:092935 AY310729 Klebsiella pneumoniae prokMSA_id:088387 AY315439 Enterobacter dissolvens strain CC-Ca20-3 prokMSA_id:090621 AY315448 Klebsiella sp. CC-88168 prokMSA_id:094394 AY376437 Klebsiella pneumoniae prokMSA_id:010156 X80684 Klebsiella pneumoniae. 2.28.3.27.12 SER.FICARIA_SUBGROUP 112 seqs 2.28.3.27.12.002 OTU 1 seq prokMSA_id:010180 AF015258 Aquamonas haywardensis str. EG121 CDC 2404-94. 2.28.3.27.12.003 OTU 1 seq prokMSA_id:010175 AB009954 str. L101. 2.28.3.27.12.006 OTU 13 seqs prokMSA_id:033363 AB033777 Secondary symbiont of Acyrthosiphon pisum prokMSA_id:026800 AB033778 Secondary symbiont of Acyrthosiphon pisum prokMSA_id:027697 AB033779 Secondary symbiont of Acyrthosiphon pisum prokMSA_id:031810 AF293617 Secondary symbiont -R of Acyrthosiphon pisum rrs prokMSA_id:037966 AF293624 Secondary symbiont -R of Uroleucon caligatum rrs prokMSA_id:085967 AY136137 Secondary symbiont -R of Aphis craccivora prokMSA_id:082660 AY136139 Secondary symbiont -R of Acyrthosiphon pisum clone Wisconsin prokMSA_id:084774 AY136140 Secondary symbiont -R of Acyrthosiphon pisum clone New York prokMSA_id:085674 AY136144 Secondary symbiont -R of Cinara cupressi prokMSA_id:082989 AY136151 Secondary symbiont -R of Macrosiphoniella helichrysi prokMSA_id:086084 AY136157 Secondary symbiont -R of Periphyllus bulgaricus prokMSA_id:085694 AY136159 Secondary symbiont -R of Smynthurodes betae prokMSA_id:010162 M27040 symbiont of symbiont S of Acyrthosiphon pisum. 2.28.3.27.12.008 OTU 52 seqs prokMSA_id:010163 AB004745 Serratia ficaria JCM 1241 . prokMSA_id:010182 AB015553 str. BD3-12. prokMSA_id:073291 AF286867 Serratia proteamaculans subsp. quinovora LMG 7887 prokMSA_id:024212 AF286868 Serratia grimesii LMG 7883 prokMSA_id:034707 AF286869 Serratia fonticola LMG 7882 prokMSA_id:043863 AF286870 Serratia odorifera DSM 4582 prokMSA_id:018247 AF286871 Serratia plymuthica DSM 49 prokMSA_id:020233 AF286872 Serratia plymuthica DSM 4540 prokMSA_id:010167 AJ233427 Serratia entomophila DSM 12358. prokMSA_id:010168 AJ233428 Serratia ficaria DSM 4569 . prokMSA_id:010169 AJ233429 Serratia fonticola DSM 4576. prokMSA_id:010170 AJ233430 Serratia grimesii DSM 30063. prokMSA_id:010171 AJ233432 Serratia odorifera DSM 4582. prokMSA_id:010172 AJ233433 Serratia plymuthica DSM 4540. prokMSA_id:010173 AJ233434 Serratia proteamaculans DSM 4543. prokMSA_id:010174 AJ233435 Serratia proteamaculans DSM 4597. prokMSA_id:044518 AJ243601 Serratia sp. prokMSA_id:033276 AJ279002 Serratia fonticola strain IB4 prokMSA_id:027304 AJ279044 Serratia proteamaculans quinovora strain CP6 prokMSA_id:052641 AJ279045 Serratia proteamaculans quinovora strain CP6a prokMSA_id:020403 AJ279046 Serratia proteamaculans quinovora strain CP6b prokMSA_id:043282 AJ279047 Serratia proteamaculans quinovora strain CP6c prokMSA_id:047869 AJ279048 Serratia proteamaculans quinovora strain CP6d prokMSA_id:052638 AJ279049 Serratia proteamaculans quinovora strain CP6e prokMSA_id:030806 AJ279050 Serratia proteamaculans quinovora strain CP6f prokMSA_id:024791 AJ279051 Serratia proteamaculans quinovora strain CP6g prokMSA_id:025598 AJ279052 Serratia proteamaculans quinovora strain Ox1a prokMSA_id:033909 AJ279053 Serratia proteamaculans quinovora strain PC1 prokMSA_id:030929 AJ279054 Serratia ficaria strain NCTC 12148 prokMSA_id:045752 AJ279055 Serratia plymuthica strain RK prokMSA_id:071258 AJ288154 Serratia sp. isolate SK-03-30-2 prokMSA_id:022004 AJ288155 Serratia proteamaculans isolate 182 prokMSA_id:030445 AJ302155 Enterobacteriaceae sp. JM983 isolate JM983 prokMSA_id:027899 AJ306725 Serratia liquefaciens strain CIP 103238T prokMSA_id:020361 AJ310680 clone 228 prokMSA_id:030517 AJ310681 clone 244 prokMSA_id:041789 AJ310682 clone 231 prokMSA_id:022395 AJ310683 clone 125 prokMSA_id:045158 AJ310684 clone 227 prokMSA_id:018948 AJ310685 clone 267 prokMSA_id:030328 AJ417371 Serratia sp. White strain White prokMSA_id:064290 AY040208 Serratia proteamaculans prokMSA_id:082090 AY236502 Serratia fonticola UTAD54 prokMSA_id:085224 AY243097 Serratia liquefaciens prokMSA_id:084294 AY245173 Serratia rubidaea prokMSA_id:086492 AY253920 Rahnella aquatilis isolate k 62 prokMSA_id:085035 AY253921 Rahnella aquatilis m 46 prokMSA_id:083887 AY253924 Serratia liquefaciens prokMSA_id:088177 AY308053 Serratia sp. AZ22R6 prokMSA_id:091290 AY345555 H16 prokMSA_id:010181 U93263 Aranicola proteolyticus. prokMSA_id:010165 Y15345 str. PRLIST08. 2.28.3.27.12.009 OTU 1 seq prokMSA_id:024770 AF424142 gamma MERTZ_0CM_164 2.28.3.27.12.010 OTU 2 seqs prokMSA_id:054261 AF224826 clone Car35rc prokMSA_id:053341 AF224827 clone Car36rc 2.28.3.27.12.011 OTU 1 seq prokMSA_id:060372 AF513470 Aeromonadaceae PH35 2.28.3.27.12.012 OTU 1 seq prokMSA_id:063936 AF476109 Secondary endosymbiont of Paracoccus nothofagicola and 23S genes 2.28.3.27.12.013 OTU 1 seq prokMSA_id:063944 AF476102 Secondary endosymbiont of Cyphonococcus alpinus and 23S genes 2.28.3.27.12.014 OTU 1 seq prokMSA_id:065383 AF511524 Serratia sp. BuxOS3 2.28.3.27.12.015 OTU 1 seq prokMSA_id:074526 AF307869 Pseudomonas putida 5IIANH 2.28.3.27.12.016 OTU 1 seq prokMSA_id:076905 AY167945 Swine manure RT-5C 2.28.3.27.12.017 OTU 1 seq prokMSA_id:083201 AY136155 Secondary symbiont -R of Pterochloroides persicae 2.28.3.27.12.018 OTU 1 seq prokMSA_id:086546 AY136146 Secondary symbiont -R of Cinara tujafilina 2.28.3.27.12.019 OTU 1 seq prokMSA_id:097336 Y14149 Aranicola proteolyticus isolate ISR09 2.28.3.27.12.999 poor quality 33 seqs prokMSA_id:010183 AB023615 clone NIC028. prokMSA_id:010184 AB023616 clone NIC029. prokMSA_id:010176 AB030924 Rahnella IEGN17 str. IEGN17. prokMSA_id:010177 AF010045 unnamed organism. prokMSA_id:010178 AF010051 unnamed organism. prokMSA_id:010179 AF010088 unnamed organism. prokMSA_id:010166 AF047634 clone TRA1-6. prokMSA_id:073403 AF227838 Rahnella sp. 42262 prokMSA_id:028209 AF286168 IAFBB6 prokMSA_id:038229 AF286169 IAFBC1 prokMSA_id:072279 AF286170 IAFBC5 prokMSA_id:028683 AF286178 IAGBH3 prokMSA_id:043989 AF390924 clone ICBTB11 prokMSA_id:067631 AF427159 Serratia sp. 8-1 prokMSA_id:042004 AF427949 clone 3A prokMSA_id:075500 AF431337 gamma clone C16.11WL prokMSA_id:038142 AF468971 Serratia sp. 2-68 prokMSA_id:055769 AF486797 clone E5-46-HS3P-322 prokMSA_id:010164 AJ232873 clone LRE19. prokMSA_id:022291 AJ289198 MS1 prokMSA_id:039510 AJ308271 clone F99_09 prokMSA_id:047120 AJ314669 clone slf252 prokMSA_id:059201 AJ344217 Serratia sp. EJP 91 isolate EJP 91 prokMSA_id:071333 AJ405038 A19-K4 clone A19-K4 prokMSA_id:059278 AJ508694 Serratia proteamaculans isolate MBRG 4.8 prokMSA_id:089546 AJ574896 Serratia proteamaculans strain 1A1 prokMSA_id:090504 AJ575091 Serratia proteamaculans strain 1A4 prokMSA_id:088229 AJ575093 Serratia proteamaculans strain 1A6 prokMSA_id:093760 AJ581986 Serratia plymuthica strain 3Re4-18 prokMSA_id:071777 AX537358 1 from Patent EP1241247 prokMSA_id:056135 AY043574 Forest soil 3S2.B9 prokMSA_id:030887 AY048907 L10-4hw6 prokMSA_id:093422 AY297789 Serratia odorifera 2.28.3.27.13 XENORHABDUS_SUBGROUP 284 seqs 2.28.3.27.13.1 BEMISIA_SYMBIONT 26 seqs 2.28.3.27.13.1.001 OTU 25 seqs prokMSA_id:050515 AF293616 Secondary symbiont -T of Acyrthosiphon pisum rrs prokMSA_id:019360 AF293621 Secondary symbiont -T of Uroleucon ambrosiae isolate T- rrs prokMSA_id:035772 AF293622 Secondary symbiont -T of Uroleucon ambrosiae isolate T- rrs prokMSA_id:024843 AF293626 Secondary symbiont -T of Uroleucon rudbeckiae rrs prokMSA_id:051366 AF400470 Secondary endosymbiont of Bemisia tabaci clone AZA prokMSA_id:020242 AF400471 Secondary endosymbiont of Bemisia tabaci clone AZB prokMSA_id:017365 AF400472 Secondary endosymbiont of Bemisia tabaci clone CALA prokMSA_id:051838 AF400473 Secondary endosymbiont of Bemisia tabaci clone CULMX prokMSA_id:043876 AF400475 Secondary endosymbiont of Bemisia tabaci clone ISR5 prokMSA_id:028464 AF400476 Secondary endosymbiont of Bemisia tabaci clone JATPR prokMSA_id:050332 AF400477 Secondary endosymbiont of Bemisia tabaci clone MEX4 prokMSA_id:036537 AF400479 Secondary endosymbiont of Bemisia tabaci clone TANZ3-1 prokMSA_id:042775 AJ297720 gamma DAC-2000 prokMSA_id:083831 AY136136 Secondary symbiont -T of Aphis craccivora prokMSA_id:084922 AY136141 Secondary symbiont -T of Acyrthosiphon pisum prokMSA_id:086586 AY136145 Secondary symbiont -T of Cacopsylla pyri prokMSA_id:084895 AY136148 Secondary symbiont -T of Macrosiphum euphorbiae prokMSA_id:084832 AY136156 Secondary symbiont -T of Pemphigus spyrothecae prokMSA_id:085003 AY136161 Secondary symbiont -T of Periphyllus bulgaricus prokMSA_id:083862 AY136162 Secondary symbiont -T of Uroleucon nigrotuberculatum prokMSA_id:083342 AY136163 Secondary symbiont -T of Uroleucon pieloui prokMSA_id:085992 AY136164 Secondary symbiont -T of Uroleucon reynoldense prokMSA_id:090589 AY264675 Secondary endosymbiont of Bemisia argentifolii ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:090074 AY264676 Secondary endosymbiont of Bemisia tabaci ; tRNA-Glu complete ; and 23S prokMSA_id:010185 Z11926 symbiont of Bemisia tabaci sweet potato whitefly. 2.28.3.27.13.1.002 OTU 1 seq prokMSA_id:094137 AY371187 Secondary endosymbiont of Bemisia tabaci 2.28.3.27.13.2 SER.RUBIDAEA_SUBGROUP 13 seqs 2.28.3.27.13.2.001 OTU 1 seq prokMSA_id:010194 AB031646 str. TIHP368-30. 2.28.3.27.13.2.002 OTU 1 seq prokMSA_id:010195 U84730 Rahnella 'Phal 17B' str. Phal 17B. 2.28.3.27.13.2.003 OTU 2 seqs prokMSA_id:010186 AB004751 Serratia rubidaea str. Ewing 2199- JCM 1240 . prokMSA_id:010189 AJ233436 Serratia rubidaea str. Ewing 2199- DSM 4480. 2.28.3.27.13.2.004 OTU 1 seq prokMSA_id:010187 AF053975 Edwardsiella tarda. 2.28.3.27.13.2.005 OTU 3 seqs prokMSA_id:029699 AF293623 Secondary symbiont -U of Uroleucon astronomus rrs prokMSA_id:086595 AY136154 Secondary symbiont -U of Pemphigus betae prokMSA_id:085221 AY136167 Secondary symbiont -U of Chaitophorus populeti 2.28.3.27.13.2.999 poor quality 5 seqs prokMSA_id:010191 AB030921 Serratia marcescens str. IEGN4. prokMSA_id:010192 AB030922 Serratia rubidaea str. IEGN11. prokMSA_id:010193 AB031606 str. TIHP302-20b. prokMSA_id:010188 U65971 Serratia marcescens str. ST9631. prokMSA_id:010190 Z75325 Yersinia frederiksenii. 2.28.3.27.13.3 BN.RUBRIFACIENS_SUBGROUP 12 seqs 2.28.3.27.13.3.001 OTU 2 seqs prokMSA_id:046931 AJ233419 Erwinia salicis strain DSM 30166 prokMSA_id:010201 Z96097 Brenneria salicis LMG 2698 . 2.28.3.27.13.3.002 OTU 3 seqs prokMSA_id:010196 AJ223469 Brenneria quercina LMG 2724 . prokMSA_id:010200 AJ233416 Brenneria quercina DSM 4561. prokMSA_id:010199 U80210 Brenneria salicis ATCC 15712 . 2.28.3.27.13.3.003 OTU 3 seqs prokMSA_id:051229 AJ233418 Erwinia rubrifaciens strain DSM 4483 prokMSA_id:010197 U80207 Brenneria rubrifaciens ATCC 29291 . prokMSA_id:010198 Z96098 Brenneria rubrifaciens LMG 2709 . 2.28.3.27.13.3.004 OTU 1 seq prokMSA_id:063935 AF476107 Secondary endosymbiont of Planococcus citri and 23S genes 2.28.3.27.13.3.005 OTU 1 seq prokMSA_id:063937 AF476108 Secondary endosymbiont of Planococcus ficus and 23S genes 2.28.3.27.13.3.999 poor quality 2 seqs prokMSA_id:021925 AF332247 clone T12-2 prokMSA_id:058783 AY125576 Symbiont of Sitophilus zeamais 2.28.3.27.13.4 P.VULGARIS_SUBGROUP 80 seqs 2.28.3.27.13.4.001 OTU 3 seqs prokMSA_id:036854 AJ301684 Providencia alcalifaciens strain CIP8290T prokMSA_id:010214 U20277 str. ME. prokMSA_id:010213 U20279 str. SM. 2.28.3.27.13.4.002 OTU 1 seq prokMSA_id:010212 U20273 str. AM. 2.28.3.27.13.4.003 OTU 1 seq prokMSA_id:010211 U20278 str. OR. 2.28.3.27.13.4.006 OTU 24 seqs prokMSA_id:019687 AB079370 Proteus mirabilis prokMSA_id:027167 AF008582 Proteus mirabilis prokMSA_id:010209 AF076034 Proteus mirabilis. prokMSA_id:010210 AF128840 Proteus mirabilis. prokMSA_id:010206 AJ233425 Proteus vulgaris DSM 30118. prokMSA_id:019524 AJ301682 Proteus mirabilis strain CIP103181T prokMSA_id:018414 AJ301683 Proteus vulgaris strain CIP103181T prokMSA_id:066558 AJ487028 amplicon N prokMSA_id:075783 AY167934 Swine manure RT-2B prokMSA_id:076139 AY167935 Swine manure RT-2C prokMSA_id:076558 AY167936 Swine manure RT-2D prokMSA_id:075572 AY167938 Swine manure RT-3B prokMSA_id:077224 AY167939 Swine manure RT-3C prokMSA_id:076116 AY167940 Swine manure RT-4A prokMSA_id:076776 AY167942 Swine manure RT-4C prokMSA_id:075554 AY167943 Swine manure RT-4D prokMSA_id:076918 AY167947 Swine manure RT-6A prokMSA_id:076689 AY167951 Swine manure RT-10A prokMSA_id:076398 AY167953 Swine manure RT-13A prokMSA_id:079663 AY186047 Proteus mirabilis strain m27 prokMSA_id:079896 AY186048 Proteus vulgaris strain m34 prokMSA_id:080809 AY186055 Proteus mirabilis strain MP4 prokMSA_id:037204 J01874 Proteus vulgaris prokMSA_id:010205 X07652 Proteus vulgaris IFAM 1731. 2.28.3.27.13.4.007 OTU 1 seq prokMSA_id:010204 U91786 unnamed organism. 2.28.3.27.13.4.008 OTU 1 seq prokMSA_id:010203 U91515 Phlomobacter fragariae str. france. 2.28.3.27.13.4.009 OTU 20 seqs prokMSA_id:039170 AB038366 Arsenophonus endosymbiont of Diaphorina citri prokMSA_id:053691 AF263561 Secondary endosymbiont of Glycaspis brimblecombei 23S pseudouridine synthase rluD cds; hypothetical protein YfiH yfiH and ClpB protease clpB genes complete cds; complete ; intergenic spacer complete ; tRNA-Glu complete ; and 23S prokMSA_id:054964 AF263562 Secondary endosymbiont of Heteropsylla texana ; intergenic spacer complete ; and 23S prokMSA_id:050143 AF400474 Secondary endosymbiont of Bemisia tabaci clone IND34 prokMSA_id:018267 AF400480 Secondary endosymbiont of Bemisia tabaci clone TANZ3-2 prokMSA_id:033418 AF400481 Secondary endosymbiont of Bemisia tabaci clone UG26 prokMSA_id:073583 AY057392 Candidatus Phlomobacter betae complete prokMSA_id:082729 AY136142 Symbiont of Aphis spiraecola prokMSA_id:085281 AY136153 Symbiont of Myzocallis sp. prokMSA_id:086038 AY136168 Symbiont of Wahlgreniella nervata prokMSA_id:088445 AY264663 Arsenophonus endosymbiont of Acanthaleyrodes styraci ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:089143 AY264665 Arsenophonus endosymbiont of Aleuroplatus gelatinosus ; tRNA-Glu complete ; and 23S prokMSA_id:089902 AY264666 Arsenophonus endosymbiont of Aleyrodes elevatus ; tRNA-Glu complete ; and 23S prokMSA_id:088746 AY264667 Arsenophonus endosymbiont of Dialeurodes hongkongensis ; tRNA-Glu complete ; and 23S prokMSA_id:088455 AY264668 Arsenophonus endosymbiont of Neomaskellia andropogonis ; tRNA-Glu complete ; and 23S prokMSA_id:089793 AY264669 Arsenophonus endosymbiont of Siphoninus phillyreae ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:088353 AY264670 Arsenophonus endosymbiont of Tetraleurodes acaciae ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:088412 AY264672 Arsenophonus endosymbiont of Trialeurodes vaporariorum ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:088430 AY264673 Arsenophonus endosymbiont of Australiococcus greville ; tRNA-Glu complete ; and 23S prokMSA_id:089402 AY264674 Arsenophonus nasoniae ; tRNA-Ile and tRNA-Ala genes complete ; and 23S 2.28.3.27.13.4.010 OTU 1 seq prokMSA_id:021132 AF286129 from Aleurodicus dugesii 2.28.3.27.13.4.011 OTU 1 seq prokMSA_id:038357 AF417877 YSS/2001-4 2.28.3.27.13.4.012 OTU 1 seq prokMSA_id:040697 AY043168 Morganella morganii 2.28.3.27.13.4.013 OTU 1 seq prokMSA_id:045337 AF008581 Providencia stuartii 2.28.3.27.13.4.014 OTU 1 seq prokMSA_id:052003 AF400478 Secondary endosymbiont of Bemisia tabaci clone TANZ15 2.28.3.27.13.4.015 OTU 1 seq prokMSA_id:082772 AB099406 Morganella morganii 2.28.3.27.13.4.016 OTU 8 seqs prokMSA_id:086606 AY265341 Arsenophonus endosymbiont of Dermacentor variabilis isolate 9.4.3 prokMSA_id:083089 AY265342 Arsenophonus endosymbiont of Dermacentor variabilis isolate 5.1.1 prokMSA_id:085254 AY265343 Arsenophonus endosymbiont of Dermacentor variabilis isolate 9.4.16 prokMSA_id:085811 AY265344 Arsenophonus endosymbiont of Dermacentor variabilis isolate 5.1.4 prokMSA_id:083954 AY265345 Arsenophonus endosymbiont of Dermacentor variabilis isolate 17.10.1 prokMSA_id:086631 AY265346 Arsenophonus endosymbiont of Dermacentor variabilis isolate 17.10.10 prokMSA_id:084020 AY265347 Arsenophonus endosymbiont of Dermacentor variabilis isolate L3.2 prokMSA_id:082929 AY265348 Arsenophonus endosymbiont of Dermacentor variabilis isolate 17.10.2 2.28.3.27.13.4.017 OTU 1 seq prokMSA_id:085614 AB099401 Proteus vulgaris 2.28.3.27.13.4.018 OTU 1 seq prokMSA_id:088742 AY264671 Arsenophonus endosymbiont of Tetraleurodes mori ; tRNA-Glu complete ; and 23S 2.28.3.27.13.4.019 OTU 1 seq prokMSA_id:088891 AY264677 Arsenophonus endosymbiont of Bemisia sp. and 23S genes 2.28.3.27.13.4.020 OTU 1 seq prokMSA_id:090023 AY264664 Arsenophonus endosymbiont of Aleurodicus dispersus ; tRNA-Ala complete ; and 23S 2.28.3.27.13.4.999 poor quality 11 seqs prokMSA_id:041374 AB052088 Providencia alcalifaciens prokMSA_id:043990 AF240128 PIA-12 prokMSA_id:037480 AF376307 ckncm074-A22.E12 prokMSA_id:055822 AJ516035 Proteus mirabilis strain L2/85 prokMSA_id:057542 AJ516036 Proteus mirabilis strain L3/6 prokMSA_id:076095 AJ517821 Providencia sp. K20 strain K20 prokMSA_id:076615 AJ517822 Providencia stuartii prokMSA_id:092914 AY126641 Primary endosymbiont of Trigonotarsus rugosus prokMSA_id:010208 D63397 Proteus mirabilis str. GN79. prokMSA_id:010207 D63398 Proteus vulgaris str. GN76. prokMSA_id:010202 M90801 Arsenophonus nasoniae str. SKI4. 2.28.3.27.13.5 XEN.NEMATOPHILUS_SUBGROUP 153 seqs 2.28.3.27.13.5.001 OTU 1 seq prokMSA_id:010301 D78008 Xenorhabdus japonicus str. SK-1 IAM 14265 . 2.28.3.27.13.5.002 OTU 6 seqs prokMSA_id:063456 AF522294 Xenorhabdus nematophila complete prokMSA_id:087960 AY278674 Xenorhabdus nematophila prokMSA_id:010300 D78009 Xenorhabdus nematophilus ATCC 19061 . prokMSA_id:010239 X82251 Xenorhabdus nematophilus DSM 3370 . prokMSA_id:010240 Z76737 Xenorhabdus nematophilus str. N2-4. prokMSA_id:010241 Z76738 Xenorhabdus nematophilus str. RIOBRAVIS. 2.28.3.27.13.5.003 OTU 3 seqs prokMSA_id:086906 AY278675 Xenorhabdus beddingii prokMSA_id:010299 D78006 Xenorhabdus beddingii DSM 4764 . prokMSA_id:010298 X82254 Xenorhabdus beddingii DSM 4764 . 2.28.3.27.13.5.006 OTU 27 seqs prokMSA_id:010263 AF079814 Photorhabdus HO1 str. HO1. prokMSA_id:030793 AJ007405 Photorhabdus temperata strain XINach prokMSA_id:087486 AY278651 Photorhabdus temperata strain K122 prokMSA_id:087425 AY278652 Photorhabdus temperata strain HSH2 prokMSA_id:087645 AY278653 Photorhabdus temperata strain HL81 prokMSA_id:087936 AY278654 Photorhabdus temperata strain H4 prokMSA_id:086932 AY278655 Photorhabdus temperata strain Meg1 prokMSA_id:086945 AY278656 Photorhabdus temperata strain OH1 prokMSA_id:087111 AY278657 Photorhabdus temperata strain NC19 prokMSA_id:087965 AY278658 Photorhabdus temperata strain Heliothidis prokMSA_id:087767 AY278659 Photorhabdus temperata strain Wx6 prokMSA_id:087802 AY278660 Photorhabdus temperata strain Wx8 prokMSA_id:086767 AY278661 Photorhabdus temperata strain Wx9 prokMSA_id:088052 AY278662 Photorhabdus temperata strain Wx9Hyper prokMSA_id:086723 AY278663 Photorhabdus temperata strain Wx10 prokMSA_id:087269 AY278664 Photorhabdus temperata strain Wx11 prokMSA_id:087333 AY278665 Photorhabdus temperata strain Wx12 prokMSA_id:087901 AY278666 Photorhabdus temperata strain P7 prokMSA_id:088447 AY296252 Photorhabdus temperata prokMSA_id:010258 D78004 Photorhabdus luminescens ATCC 29304. prokMSA_id:010257 X82249 Photorhabdus luminescens DSM 3369. prokMSA_id:010282 X82250 Photorhabdus luminescens str. Ehlers HSH2. prokMSA_id:010264 Z76746 Photorhabdus luminescens str. WX2. prokMSA_id:010265 Z76747 Photorhabdus luminescens str. WX11. prokMSA_id:010293 Z76748 Photorhabdus luminescens str. PE 87.3. prokMSA_id:010266 Z76750 Photorhabdus luminescens str. Mge1. prokMSA_id:010267 Z76751 Photorhabdus luminescens str. Meg2. 2.28.3.27.13.5.009 OTU 3 seqs prokMSA_id:010260 AF079811 Photorhabdus NP1 str. NP1. prokMSA_id:010261 AF079812 Photorhabdus OH10 str. OH10. prokMSA_id:010262 AF079813 Photorhabdus SJ2 str. SJ2. 2.28.3.27.13.5.010 OTU 2 seqs prokMSA_id:010245 D78010 Xenorhabdus poinarii DSM 4768 . prokMSA_id:010256 X82253 Xenorhabdus poinarii DSM 4768 . 2.28.3.27.13.5.011 OTU 1 seq prokMSA_id:010255 Z76739 Xenorhabdus japonicus str. SK-1. 2.28.3.27.13.5.012 OTU 5 seqs prokMSA_id:010247 AF079816 Xenorhabdus OS21 str. OS21. prokMSA_id:087799 AY278673 Xenorhabdus bovienii prokMSA_id:089531 AY317154 Xenorhabdus bovienii strain CB54 prokMSA_id:010244 D78007 Xenorhabdus bovienii ATCC 35271 . prokMSA_id:010246 X82252 Xenorhabdus bovienii DSM 4766 . 2.28.3.27.13.5.014 OTU 31 seqs prokMSA_id:010218 AF079815 Photorhabdus FL2122 str. FL2122. prokMSA_id:072527 AJ007359 Photorhabdus luminescens subsp. akhurstii strain FRG0 prokMSA_id:046111 AJ007404 Photorhabdus luminescens subsp. laumondii strain TT01 prokMSA_id:017167 AJ295161 Photorhabdus luminescens subsp. laumondii strain TUR1 prokMSA_id:074806 AJ295162 Photorhabdus luminescens subsp. laumondii strain TUR2 prokMSA_id:083069 AJ560630 Photorhabdus luminescens subsp. kayaii tyep strain DSM 15194T prokMSA_id:085557 AJ560631 Photorhabdus luminescens subsp. kayaii strain DSM 15198 prokMSA_id:085843 AJ560632 Photorhabdus luminescens subsp. kayaii strain DSM 15197 prokMSA_id:085007 AJ560633 Photorhabdus luminescens subsp. laumondii strain DSM 15195 prokMSA_id:087608 AY278642 Photorhabdus luminescens subsp. akhurstii strain W14 prokMSA_id:087596 AY278643 Photorhabdus luminescens subsp. akhurstii strain IND prokMSA_id:087344 AY278644 Photorhabdus luminescens subsp. akhurstii strain EG2 prokMSA_id:087568 AY278645 Photorhabdus luminescens subsp. akhurstii strain IS5 prokMSA_id:087048 AY278646 Photorhabdus luminescens subsp. laumondii strain TT01 prokMSA_id:087446 AY278647 Photorhabdus luminescens subsp. laumondii strain Brecon prokMSA_id:087663 AY278648 Photorhabdus luminescens subsp. laumondii strain HP88 prokMSA_id:086788 AY278649 Photorhabdus luminescens subsp. laumondii strain Az36 prokMSA_id:086852 AY278650 Photorhabdus luminescens subsp. laumondii strain ARG prokMSA_id:094735 BX571859 Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 1/17 prokMSA_id:095127 BX571860 Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 2/17 prokMSA_id:095015 BX571861 Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 3/17 prokMSA_id:095017 BX571863 Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 5/17 prokMSA_id:095065 BX571873 Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 15/17 prokMSA_id:094459 BX571874 Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 16/17 prokMSA_id:098744 NC_005126 Photorhabdus luminescens subsp. laumondii TTO1 complete genome prokMSA_id:010231 Y17605 Photorhabdus luminescens str. LN2. prokMSA_id:010219 Z76741 Photorhabdus luminescens str. V6-1. prokMSA_id:010221 Z76743 Photorhabdus luminescens str. HP88. prokMSA_id:010222 Z76744 Photorhabdus luminescens str. Brecon. prokMSA_id:010223 Z76745 Photorhabdus luminescens str. IS-5. prokMSA_id:010224 Z76749 Photorhabdus luminescens str. Q614. 2.28.3.27.13.5.016 OTU 11 seqs prokMSA_id:087416 AY278640 Photorhabdus luminescens subsp. luminescens strain Hb prokMSA_id:086838 AY278641 Photorhabdus luminescens subsp. luminescens strain Hm prokMSA_id:087280 AY278672 Photorhabdus asymbiotica prokMSA_id:010243 D78005 Photorhabdus luminescens ATCC 29999 . prokMSA_id:010216 X82248 Photorhabdus luminescens DSM 3368 . prokMSA_id:010217 Z76740 Photorhabdus luminescens str. Tn-5*2. prokMSA_id:010220 Z76742 Photorhabdus luminescens str. Hm. prokMSA_id:010225 Z76752 Photorhabdus luminescens ATCC 43949. prokMSA_id:010226 Z76753 Photorhabdus luminescens ATCC 43952. prokMSA_id:010227 Z76754 Photorhabdus luminescens ATCC 43951. prokMSA_id:010228 Z76755 Photorhabdus luminescens ATCC 43950. 2.28.3.27.13.5.017 OTU 1 seq prokMSA_id:041267 AF293620 Secondary symbiont -U of Uroleucon aenum rrs 2.28.3.27.13.5.018 OTU 4 seqs prokMSA_id:081918 AY217761 Photorhabdus asymbiotica prokMSA_id:091045 AY280572 Photorhabdus asymbiotica strain 9802892 prokMSA_id:091820 AY280573 Photorhabdus asymbiotica strain MB prokMSA_id:091807 AY280574 Photorhabdus asymbiotica strain GCH001 2.28.3.27.13.5.019 OTU 2 seqs prokMSA_id:084257 AY136158 Symbiont of Pemphigus populi prokMSA_id:084718 AY136160 Symbiont of Tetraneura ulmi 2.28.3.27.13.5.020 OTU 1 seq prokMSA_id:085814 AY216500 Photorhabdus sp. Q614 2.28.3.27.13.5.021 OTU 4 seqs prokMSA_id:086576 AJ560634 Photorhabdus luminescens subsp. thraceaensis strain DSM 15199T prokMSA_id:087480 AY278667 Photorhabdus sp. KOH prokMSA_id:087583 AY278668 Photorhabdus sp. Az29 prokMSA_id:087761 AY278669 Photorhabdus sp. MOL 2.28.3.27.13.5.022 OTU 2 seqs prokMSA_id:087232 AY278670 Photorhabdus sp. JUN prokMSA_id:086969 AY278671 Photorhabdus sp. HIT 2.28.3.27.13.5.023 OTU 1 seq prokMSA_id:087839 AY286478 Xenorhabdus nematophila 2.28.3.27.13.5.999 poor quality 48 seqs prokMSA_id:076349 AB075111 clone:KSRS15 prokMSA_id:010253 U70318 Xenorhabdus sp. str. S.intB. prokMSA_id:010252 U70319 Xenorhabdus bovienii str. S.felB2. prokMSA_id:010254 U70320 Xenorhabdus sp. str. S.rioB. prokMSA_id:010277 U70546 Photorhabdus sp. str. H.marB. prokMSA_id:010278 U70547 Photorhabdus sp. str. OH30B. prokMSA_id:010279 U70548 Photorhabdus sp. str. OH31B. prokMSA_id:010280 U70549 Photorhabdus sp. str. OS13HB. prokMSA_id:010281 U70550 Photorhabdus sp. str. OHPAB. prokMSA_id:010232 U70551 Photorhabdus sp. str. FL2112B. prokMSA_id:010297 U70552 Photorhabdus sp. str. H.indB. prokMSA_id:010233 U70553 Photorhabdus sp. str. HP88B. prokMSA_id:010234 U70554 Photorhabdus sp. str. OH23B. prokMSA_id:010235 U70555 Photorhabdus sp. str. H1B. prokMSA_id:010236 U70556 Photorhabdus sp. str. H7B. prokMSA_id:010237 U70557 Photorhabdus sp. str. NebrB. prokMSA_id:010238 U70558 Photorhabdus sp. str. OH25B. prokMSA_id:010215 X53188 Xenorhabdus nematophilus. prokMSA_id:010283 Z77185 Photorhabdus luminescens str. P-Jun. prokMSA_id:010259 Z77186 Photorhabdus luminescens str. Moldavian. prokMSA_id:010284 Z77187 Photorhabdus luminescens str. PEGB. prokMSA_id:010285 Z77188 Photorhabdus luminescens str. HSH2. prokMSA_id:010286 Z77189 Photorhabdus luminescens str. HSH3. prokMSA_id:010287 Z77190 Photorhabdus luminescens str. HL81. prokMSA_id:010288 Z77191 Photorhabdus luminescens str. PE87.3. prokMSA_id:010289 Z77192 Photorhabdus luminescens str. PE87.3. prokMSA_id:010290 Z77193 Photorhabdus luminescens str. UK211. prokMSA_id:010291 Z77194 Photorhabdus luminescens str. CHJGI. prokMSA_id:010268 Z77195 Photorhabdus luminescens str. WX1. prokMSA_id:010269 Z77196 Photorhabdus luminescens str. WX1F. prokMSA_id:010294 Z77197 Photorhabdus luminescens str. WX3. prokMSA_id:010270 Z77198 Photorhabdus luminescens str. WX4. prokMSA_id:010271 Z77199 Photorhabdus luminescens str. WX5. prokMSA_id:010272 Z77200 Photorhabdus luminescens str. WX6. prokMSA_id:010273 Z77201 Photorhabdus luminescens str. WX8. prokMSA_id:010274 Z77202 Photorhabdus luminescens str. WX9. prokMSA_id:010275 Z77203 Photorhabdus luminescens str. WX10. prokMSA_id:010276 Z77204 Photorhabdus luminescens str. WX12. prokMSA_id:010229 Z77205 Photorhabdus luminescens str. WX13Z. prokMSA_id:010295 Z77206 Photorhabdus luminescens str. WX14. prokMSA_id:010296 Z77207 Photorhabdus luminescens str. WX15. prokMSA_id:010230 Z77208 Photorhabdus luminescens str. HmHyper. prokMSA_id:010242 Z77209 Xenorhabdus nematophilus str. 703. prokMSA_id:010248 Z77210 Xenorhabdus bovienii str. SF22. prokMSA_id:010249 Z77211 Xenorhabdus bovienii str. Norv. prokMSA_id:010250 Z77212 Xenorhabdus bovienii str. Sulc. prokMSA_id:010251 Z77213 Xenorhabdus bovienii str. Filip. prokMSA_id:010292 Z77214 Photorhabdus luminescens str. P-Jun. 2.28.3.27.14 YERSINIA_SUBGROUP 239 seqs 2.28.3.27.14.1 BN.NIGRIFLUENS_SUBGROUP 18 seqs 2.28.3.27.14.1.001 OTU 3 seqs prokMSA_id:045637 AJ233415 Erwinia nigrifluens strain DSM 30175 prokMSA_id:010307 U80203 Brenneria nigrifluens ATCC 13028 . prokMSA_id:010308 Z96095 Brenneria nigrifluens LMG 2694 . 2.28.3.27.14.1.002 OTU 1 seq prokMSA_id:010306 AJ233409 Brenneria alni DSM 11811. 2.28.3.27.14.1.003 OTU 1 seq prokMSA_id:010305 AJ223468 Brenneria alni ICMP 12481 . 2.28.3.27.14.1.006 OTU 5 seqs prokMSA_id:010303 AJ233422 Obesumbacterium proteus DSM 2777. prokMSA_id:070669 AJ487023 amplicon K prokMSA_id:059495 AJ508360 Hafnia alvei . isolate MBRG 1.2 prokMSA_id:086541 AY253922 Hafnia alvei isolate k 43 prokMSA_id:084587 AY253923 Hafnia alvei isolate m 49 2.28.3.27.14.1.007 OTU 1 seq prokMSA_id:025611 AF273037 Samsonia erythrinae complete 2.28.3.27.14.1.008 OTU 1 seq prokMSA_id:028528 AB067723 Megacopta punctatissima symbiont 2.28.3.27.14.1.009 OTU 1 seq prokMSA_id:091649 AJ514257 gamma 128 2.28.3.27.14.1.010 OTU 1 seq prokMSA_id:091710 AY345449 KA3 2.28.3.27.14.1.999 poor quality 4 seqs prokMSA_id:045834 AF353280 compost clone SSCP1d0 prokMSA_id:086316 AY275492 Gamma MSB2146 isolate MSB2146 prokMSA_id:010302 M59155 Hafnia alvei ATCC 13337 . prokMSA_id:010304 U84729 Hafnia alvei str. Phal 10B. 2.28.3.27.14.2 ER.AMERICANA_SUBGROUP 44 seqs 2.28.3.27.14.2.003 OTU 12 seqs prokMSA_id:010316 AB004762 unnamed organism. prokMSA_id:051726 AJ415576 Rahnella sp. 0011 836 strain 0011 836 prokMSA_id:010324 U29438 Ewingella americana. prokMSA_id:010310 U88434 Rahnella 'CDC 1-576' CDC 1-576. prokMSA_id:010311 U88435 Rahnella 'CDC 21234' CDC 21234. prokMSA_id:010312 U88437 Rahnella 'CDC 658-79' CDC 658-79. prokMSA_id:010313 U88438 Rahnella 'CDC Bonn7' CDC Bonn7. prokMSA_id:010314 U88439 Rahnella 'CDC Italy 2383' str. 2383 CDC Italy. prokMSA_id:010309 X79937 Rahnella aquatilis str. 2-87. prokMSA_id:010322 X79940 Rahnella aquatilis str. 3-88; 334. prokMSA_id:010323 X88848 Ewingella americana. prokMSA_id:097990 Y14142 Rahnella aquatilis isolate ISR02 2.28.3.27.14.2.004 OTU 2 seqs prokMSA_id:084349 AY253919 Rahnella aquatilis isolate k 8 prokMSA_id:010315 U90758 Rahnella genosp. 3 DSM 30078. 2.28.3.27.14.2.005 OTU 1 seq prokMSA_id:027646 AJ290038 GKS2-91 2.28.3.27.14.2.006 OTU 3 seqs prokMSA_id:043984 AB064515 Buchnera aphidicola Yamatocallis tokyoensis isolate:#525 secondary intracellular symbiotic prokMSA_id:028751 AB064516 Buchnera aphidicola Yamatocallis tokyoensis isolate:#526 secondary intracellular symbiotic prokMSA_id:047317 AB064517 Buchnera aphidicola Yamatocallis tokyoensis isolate:#566 secondary intracellular symbiotic 2.28.3.27.14.2.999 poor quality 26 seqs prokMSA_id:070236 AJ311966 gamma strain OS-196 prokMSA_id:027271 AJ314670 clone sl616 prokMSA_id:049661 AJ314671 clone sl716 prokMSA_id:032239 AJ314674 clone slf726 prokMSA_id:018878 AJ314675 clone slf826 prokMSA_id:043941 AJ409160 Enterobacterium dtb86 strain dtb86 prokMSA_id:077939 AJ459903 Enterobacteriales clone BMD 3 ME3 prokMSA_id:089730 AJ574894 Budvicia aquatica strain S3 prokMSA_id:090352 AJ575061 Rahnella aquatilis strain S6 prokMSA_id:089494 AJ575071 Serratia fonticola strain S19 prokMSA_id:046570 AY039439 Earthworm cast C11D1 prokMSA_id:056703 AY135890 clone SG1-136 prokMSA_id:089739 AY332817 Yersinia frederiksenii strain 867 prokMSA_id:089949 AY332832 Yersinia kristensenii strain ATCC 33638 prokMSA_id:088739 AY332839 Yersinia mollaretii strain WE 149/92 prokMSA_id:010327 D63596 clone UN110. prokMSA_id:010325 D63600 clone UN119. prokMSA_id:010317 U65706 str. 101.5.25. prokMSA_id:010318 U65707 str. 101.7.25. prokMSA_id:010319 U65708 str. 102.5.25. prokMSA_id:010320 U65709 str. E6.25.18. prokMSA_id:010321 U95033 Rahnella aquatilis str. ISL19. prokMSA_id:010326 X91277 clone G25. prokMSA_id:010330 X91462 clone A38s. prokMSA_id:010329 X91464 clone A41u. prokMSA_id:010328 X91525 clone K10. 2.28.3.27.14.3 RAH.AQUATILIS_SUBGROUP 15 seqs 2.28.3.27.14.3.001 OTU 8 seqs prokMSA_id:077710 AB087711 Rahnella aquatilis prokMSA_id:078192 AB087712 Rahnella aquatilis isolate:YL-1 prokMSA_id:010335 AJ233426 Rahnella aquatilis DSM 4594. prokMSA_id:010333 U88436 Rahnella 'CDC 2987-79' CDC 2987-79. prokMSA_id:010334 U90757 Rahnella aquatilis CDC 1327-79. prokMSA_id:010331 X79936 Rahnella aquatilis str. 334. prokMSA_id:010336 X79938 Rahnella aquatilis str. 339. prokMSA_id:010340 X79939 Rahnella aquatilis ATCC 33989. 2.28.3.27.14.3.002 OTU 1 seq prokMSA_id:010332 AJ232875 clone LRE12. 2.28.3.27.14.3.999 poor quality 6 seqs prokMSA_id:061174 AF487794 Rahnella sp. RZ-270 prokMSA_id:010337 AJ232798 clone TRE7. prokMSA_id:064692 AJ489338 Rahnella sp. Lgg5.8 strain Lgg5.8 prokMSA_id:089988 AY332819 Yersinia frederiksenii strain CNY 867 prokMSA_id:010339 U65721 Rahnella aquatilis ATCC 33071. prokMSA_id:010338 U87507 clone pS-107F. 2.28.3.27.14.4 YER.ENTEROCOLITICA_SUBGROUP 30 seqs 2.28.3.27.14.4.001 OTU 9 seqs prokMSA_id:041539 AF282308 Yersinia enterocolitica prokMSA_id:052901 AF366378 Yersinia enterocolitica prokMSA_id:010347 U63135 Yersinia enterocolitica str. German. prokMSA_id:010348 X68673 Yersinia enterocolitica. prokMSA_id:010341 X68674 Yersinia enterocolitica. prokMSA_id:010342 Z49828 Yersinia enterocolitica str. ER-3206-92. prokMSA_id:010345 Z49829 Yersinia enterocolitica str. ER-26036-92. prokMSA_id:010349 Z49830 Yersinia enterocolitica str. ER-31406-92. prokMSA_id:010346 Z75316 Yersinia enterocolitica str. O:3 108 c. 2.28.3.27.14.4.002 OTU 1 seq prokMSA_id:010343 AJ233407 Budvicia aquatica DSM 5075. 2.28.3.27.14.4.003 OTU 1 seq prokMSA_id:025922 AF293619 Secondary symbiont -U of Macrosiphoniella ludovicianae rrs 2.28.3.27.14.4.004 OTU 4 seqs prokMSA_id:077662 AB074625 gamma clone:APe2_17 prokMSA_id:052747 AF189697 Activated sludge BC55 prokMSA_id:066062 AF461011 Morganella morganii strain M567 prokMSA_id:026769 AJ301681 Morganella morganii strain CIPA231T 2.28.3.27.14.4.005 OTU 1 seq prokMSA_id:045848 AJ309974 Enterobacterium dtb112 2.28.3.27.14.4.006 OTU 1 seq prokMSA_id:092057 AY126633 Primary endosymbiont of Diocalandra frumenti 2.28.3.27.14.4.999 poor quality 13 seqs prokMSA_id:010352 AB023609 clone NIC018. prokMSA_id:010350 AJ232857 clone LRS28. prokMSA_id:010351 AJ232858 clone LRS8. prokMSA_id:030541 AJ344487 Yersinia sp. strain SFLA39 prokMSA_id:039355 AJ344490 Yersinia sp. strain MBT16 prokMSA_id:089231 AY332812 Yersinia enterocolitica strain 8081 prokMSA_id:088868 AY332813 Yersinia enterocolitica strain A 1074 prokMSA_id:089750 AY332814 Yersinia enterocolitica strain YE 37 prokMSA_id:089426 AY332815 Yersinia enterocolitica strain 147 prokMSA_id:090150 AY332836 Yersinia kristensenii strain WS O52 prokMSA_id:010354 M59292 Yersinia enterocolitica ATCC 9610 . prokMSA_id:010353 X68671 Yersinia enterocolitica. prokMSA_id:010344 Z75324 Yersinia enterocolitica str. O:8 WA c. 2.28.3.27.14.5 YER.PESTIS_SUBGROUP 132 seqs 2.28.3.27.14.5.001 OTU 1 seq prokMSA_id:010394 X75277 Yersinia aldovae ATCC 35236 . 2.28.3.27.14.5.002 OTU 66 seqs prokMSA_id:056451 AE013602 Yersinia pestis KIM section 2 of 415 of the complete genome prokMSA_id:063176 AE013632 Yersinia pestis KIM section 32 of 415 of the complete genome prokMSA_id:063173 AE013647 Yersinia pestis KIM section 47 of 415 of the complete genome prokMSA_id:063175 AE013651 Yersinia pestis KIM section 51 of 415 of the complete genome prokMSA_id:063174 AE013694 Yersinia pestis KIM section 94 of 415 of the complete genome prokMSA_id:063172 AE013911 Yersinia pestis KIM section 311 of 415 of the complete genome prokMSA_id:063168 AE013985 Yersinia pestis KIM section 385 of 415 of the complete genome prokMSA_id:024350 AF282306 Yersinia pestis prokMSA_id:074815 AF282307 Yersinia pseudotuberculosis prokMSA_id:022202 AF365934 Yersinia pseudotuberculosis strain 2883 prokMSA_id:035507 AF365935 Yersinia pseudotuberculosis strain 354 prokMSA_id:038612 AF365936 Yersinia pseudotuberculosis strain Kuratani-2 prokMSA_id:037543 AF365937 Yersinia pseudotuberculosis strain 49 prokMSA_id:051804 AF365938 Yersinia pseudotuberculosis strain 2660 prokMSA_id:043494 AF365939 Yersinia pseudotuberculosis strain 274 prokMSA_id:043147 AF365940 Yersinia pseudotuberculosis strain 83 prokMSA_id:042238 AF365941 Yersinia pseudotuberculosis strain 51 prokMSA_id:052382 AF365942 Yersinia pseudotuberculosis strain 212 prokMSA_id:030561 AF365943 Yersinia pseudotuberculosis strain 204 prokMSA_id:042764 AF365944 Yersinia pseudotuberculosis strain 197 prokMSA_id:028126 AF365945 Yersinia pseudotuberculosis strain 1147 prokMSA_id:022310 AF365946 Yersinia pseudotuberculosis strain 257 prokMSA_id:025758 AF365947 Yersinia pseudotuberculosis strain 151 prokMSA_id:023050 AF365948 Yersinia pseudotuberculosis strain R 708 LY prokMSA_id:046996 AF365949 Yersinia pseudotuberculosis strain 6088 prokMSA_id:023716 AF365950 Yersinia pseudotuberculosis strain R 1505 prokMSA_id:018014 AF366375 Yersinia pseudotuberculosis prokMSA_id:039860 AF366376 Yersinia aldovae prokMSA_id:041642 AF366377 Yersinia bercovieri prokMSA_id:041648 AF366379 Yersinia frederiksenii prokMSA_id:017691 AF366380 Yersinia intermedia prokMSA_id:017733 AF366381 Yersinia kristensenii prokMSA_id:037259 AF366382 Yersinia mollaretii prokMSA_id:035957 AF366383 Yersinia pestis prokMSA_id:034461 AF366384 Yersinia rohdei prokMSA_id:050988 AF366385 Yersinia ruckeri prokMSA_id:010367 AJ232222 Yersinia pestis str. SS-Yp-04. prokMSA_id:010368 AJ232223 Yersinia pestis str. SS-Yp-08. prokMSA_id:010369 AJ232224 Yersinia pestis str. SS-Yp-09. prokMSA_id:010370 AJ232225 Yersinia pestis str. SS-Yp-101. prokMSA_id:010371 AJ232226 Yersinia pestis str. SS-Yp-102. prokMSA_id:010372 AJ232227 Yersinia pestis str. SS-Yp-103. prokMSA_id:010373 AJ232228 Yersinia pestis str. SS-Yp-104. prokMSA_id:010374 AJ232229 Yersinia pestis str. SS-Yp-105. prokMSA_id:010375 AJ232230 Yersinia pestis str. SS-Yp-106. prokMSA_id:010376 AJ232231 Yersinia pestis str. SS-Yp-107. prokMSA_id:010377 AJ232232 Yersinia pestis str. SS-Yp-108. prokMSA_id:010378 AJ232233 Yersinia pestis str. SS-Yp-111. prokMSA_id:010379 AJ232234 Yersinia pestis str. SS-Yp-112. prokMSA_id:010380 AJ232235 Yersinia pestis str. SS-Yp-113. prokMSA_id:010381 AJ232236 Yersinia pestis str. SS-Yp-114. prokMSA_id:010382 AJ232237 Yersinia pestis str. SS-Yp-115. prokMSA_id:010383 AJ232238 Yersinia pestis str. SS-Yp-116. prokMSA_id:010384 AJ232239 Yersinia pestis str. SS-Yp-117. prokMSA_id:057521 AJ414141 Yersinia pestis strain CO92 complete genome; segment 1/20 prokMSA_id:057526 AJ414158 Yersinia pestis strain CO92 complete genome; segment 18/20 prokMSA_id:057519 AJ414159 Yersinia pestis strain CO92 complete genome; segment 19/20 prokMSA_id:010392 L37604 Yersinia pestis. prokMSA_id:010362 X67464 Yersinia pestis str. EV76. prokMSA_id:010388 X75274 Yersinia pestis str. D-28 ATCC 19428 . prokMSA_id:010363 X75275 Yersinia ruckeri ATCC 29473 . prokMSA_id:010393 X75276 Yersinia rohdei str. ER-2935 ATCC 43380 . prokMSA_id:010386 X89573 Yersinia sp. prokMSA_id:010391 X89574 Yersinia sp. prokMSA_id:010366 Z21939 Yersinia pseudotuberculosis str. Serotype III 1B1 B28 W.W.. prokMSA_id:010385 Z75317 Yersinia pestis str. EV pst+ c. 2.28.3.27.14.5.003 OTU 1 seq prokMSA_id:010365 X75273 Yersinia frederiksenii str. ER-1419 ATCC 33641 . 2.28.3.27.14.5.004 OTU 4 seqs prokMSA_id:047847 AF293625 Secondary symbiont -U of Uroleucon helianthicola rrs prokMSA_id:050997 AF293627 Secondary symbiont -U of Uroleucon solidaginis rrs prokMSA_id:085563 AY136138 Secondary symbiont -U of Acyrthosiphon pisum prokMSA_id:086615 AY136143 Secondary symbiont -U of Brachycaudus cardui 2.28.3.27.14.5.005 OTU 2 seqs prokMSA_id:049541 AB064513 Buchnera aphidicola Yamatocallis tokyoensis isolate:#207 secondary intracellular symbiotic prokMSA_id:050763 AB064514 Buchnera aphidicola Yamatocallis tokyoensis isolate:#317 secondary intracellular symbiotic 2.28.3.27.14.5.006 OTU 1 seq prokMSA_id:075749 AY077753 Obesumbacterium proteus 2.28.3.27.14.5.007 OTU 1 seq prokMSA_id:077684 AY172254 clone 2182 2.28.3.27.14.5.999 poor quality 56 seqs prokMSA_id:030427 AJ289197 Yersinia ruckeri strain TS1 prokMSA_id:089536 AY332802 Yersinia aldovae strain 35236 prokMSA_id:088982 AY332803 Yersinia aldovae strain CNY 71121 prokMSA_id:089813 AY332804 Yersinia bercovieri strain 6519 prokMSA_id:088689 AY332805 Yersinia bercovieri strain W 601 prokMSA_id:090357 AY332806 Yersinia bercovieri strain WA 17/96 prokMSA_id:090254 AY332807 Yersinia bercovieri strain WA 315 prokMSA_id:088173 AY332808 Yersinia bercovieri strain WE 82/87 prokMSA_id:088653 AY332809 Yersinia bercovieri strain WS 19/96 prokMSA_id:088969 AY332810 Yersinia bercovieri strain WS 27/96 prokMSA_id:089515 AY332811 Yersinia bercovieri strain WS 39/98 prokMSA_id:090030 AY332816 Yersinia frederiksenii strain 7175 prokMSA_id:088849 AY332818 Yersinia frederiksenii strain ATCC 33641 prokMSA_id:090149 AY332820 Yersinia frederiksenii strain WA 933 prokMSA_id:089449 AY332821 Yersinia frederiksenii strain WA 935 prokMSA_id:089627 AY332822 Yersinia frederiksenii strain WE 83/02 prokMSA_id:089255 AY332823 Yersinia frederiksenii strain WS 52/02 prokMSA_id:089414 AY332824 Yersinia intermedia strain 955 prokMSA_id:089649 AY332825 Yersinia intermedia strain ATCC 29909 prokMSA_id:090512 AY332826 Yersinia intermedia strain WE 24/02 prokMSA_id:088220 AY332827 Yersinia intermedia strain WE 57/93 prokMSA_id:088348 AY332828 Yersinia intermedia strain WS 11/01 prokMSA_id:090299 AY332829 Yersinia intermedia strain WS 58/02 prokMSA_id:088804 AY332830 Yersinia kristensenii strain 105 prokMSA_id:089873 AY332831 Yersinia kristensenii strain 490 prokMSA_id:088573 AY332833 Yersinia kristensenii strain WE 180/98 prokMSA_id:088408 AY332834 Yersinia kristensenii strain WE 414/93 prokMSA_id:088970 AY332835 Yersinia kristensenii strain WS 45/98 prokMSA_id:090631 AY332837 Yersinia mollaretii strain ATCC 43969 prokMSA_id:089658 AY332838 Yersinia mollaretii strain WA 134/92 prokMSA_id:089822 AY332840 Yersinia mollaretii strain WE 302/92 prokMSA_id:088398 AY332841 Yersinia mollaretii strain WS 44/98 prokMSA_id:088333 AY332842 Yersinia mollaretii strain WS 61/99 prokMSA_id:089032 AY332843 Yersinia rohdei strain ATCC 43380 prokMSA_id:090371 AY332844 Yersinia rohdei strain WA 12/96 prokMSA_id:089422 AY332845 Yersinia rohdei strain WA 14/96 prokMSA_id:089053 AY332846 Yersinia rohdei strain WA 9/90 prokMSA_id:089244 AY332847 Yersinia rohdei strain WE 38/00 prokMSA_id:090454 AY332848 Yersinia rohdei strain WS 59/02 prokMSA_id:090775 AY332849 Yersinia ruckeri strain WS 10/95 prokMSA_id:089028 AY332850 Yersinia ruckeri strain WS 20/94 prokMSA_id:089303 AY332851 Yersinia ruckeri strain WS 25/94 prokMSA_id:089008 AY332852 Yersinia ruckeri strain WS 34/93 prokMSA_id:089598 AY332853 Yersinia pseudotuberculosis strain CDC 542-84 prokMSA_id:088546 AY332854 Yersinia pseudotuberculosis strain CDC 801-84 prokMSA_id:010387 U87506 clone pS-105F. prokMSA_id:010389 X68672 Yersinia enterocolitica. prokMSA_id:010357 X75278 Yersinia kristensenii str. ER-2812 ATCC 33638 . prokMSA_id:010361 X75279 Yersinia intermedia str. ER-3854. prokMSA_id:010355 X75280 Yersinia mollaretii str. ER-2975. prokMSA_id:010390 X75281 Yersinia bercovieri str. ER-2937 ATCC 43970 . prokMSA_id:010356 X95192 Yersinia sp. str. 11008. prokMSA_id:010358 Z75326 Yersinia intermedia. prokMSA_id:010359 Z75327 Yersinia kristensenii. prokMSA_id:010360 Z75328 Yersinia mollaretii. prokMSA_id:010364 Z75329 Yersinia ruckeri. 2.28.3.27.15 PLE.SHIGELLOIDES_SUBGROUP 6 seqs 2.28.3.27.15.001 OTU 2 seqs prokMSA_id:010395 X60418 Plesiomonas shigelloides str. M51 NCIMB 9242. prokMSA_id:010396 X74688 Plesiomonas shigelloides str. M51 CIP 63.5 . 2.28.3.27.15.999 poor quality 4 seqs prokMSA_id:029480 AY038543 gamma clone CD4E5 prokMSA_id:010399 D11185 Plesiomonas shigelloides str. M51 ATCC 14029 . prokMSA_id:010397 M59159 Plesiomonas shigelloides str. M51 ATCC 14029 . prokMSA_id:010398 X91536 str. clone group K21. 2.28.4 DELTA_SUBDIVISION 3256 seqs 2.28.4.1 DESULFOVIBRIO_GROUP 577 seqs 2.28.4.1.1 DHB.RETBAENSE_SUBGROUP 60 seqs 2.28.4.1.1.001 OTU 1 seq prokMSA_id:010406 AF142814 clone ACE-39. 2.28.4.1.1.002 OTU 1 seq prokMSA_id:010407 AF142790 clone ACE-9. 2.28.4.1.1.003 OTU 1 seq prokMSA_id:010405 AF142866 clone BURTON-48. 2.28.4.1.1.004 OTU 1 seq prokMSA_id:010404 X99234 Desulfonatronovibrio hydrogenovorans str. Z-7935 DSM 9292 . 2.28.4.1.1.005 OTU 1 seq prokMSA_id:010403 AF097803 clone 1959. 2.28.4.1.1.006 OTU 1 seq prokMSA_id:010402 X80922 str. TD3. 2.28.4.1.1.007 OTU 1 seq prokMSA_id:010401 X99235 Desulfohalobium retbaense str. HR100 DSM 5692 . 2.28.4.1.1.008 OTU 1 seq prokMSA_id:010400 U48244 Desulfohalobium retbaense str. HR100 DSM 5692 . 2.28.4.1.1.009 OTU 1 seq prokMSA_id:019746 AF422615 clone t045 2.28.4.1.1.010 OTU 1 seq prokMSA_id:020431 AF434968 sponge symbiont JAWS10 2.28.4.1.1.011 OTU 1 seq prokMSA_id:021406 AF211303 MT63 2.28.4.1.1.012 OTU 1 seq prokMSA_id:022125 AF269002 SBR1093 2.28.4.1.1.013 OTU 1 seq prokMSA_id:027346 AF254388 UASB_TL20 complete 2.28.4.1.1.014 OTU 1 seq prokMSA_id:035078 AF333536 gamma clone R25 2.28.4.1.1.015 OTU 1 seq prokMSA_id:035807 AF424415 low G+C Gram-positive MERTZ_0CM_200 2.28.4.1.1.016 OTU 1 seq prokMSA_id:035878 AJ390461 soil PBS-21 2.28.4.1.1.017 OTU 1 seq prokMSA_id:036871 AF333548 clone R28 2.28.4.1.1.018 OTU 1 seq prokMSA_id:059876 AB077451 sulfate-reducing clone:sediment-9 2.28.4.1.1.019 OTU 1 seq prokMSA_id:062714 AF507841 delta clone ML635J-51 2.28.4.1.1.020 OTU 1 seq prokMSA_id:070052 AF097826 clone 49531 2.28.4.1.1.021 OTU 1 seq prokMSA_id:074638 AF524933 Desulfonauticus submarinus 2.28.4.1.1.022 OTU 1 seq prokMSA_id:075601 AY164446 clone ULIB-66 2.28.4.1.1.023 OTU 2 seqs prokMSA_id:075809 AY164407 delta clone DLIB-37 prokMSA_id:084588 AY226318 delta clone DBBB-9 2.28.4.1.1.024 OTU 1 seq prokMSA_id:075854 AY164430 clone ULIB-14 2.28.4.1.1.025 OTU 1 seq prokMSA_id:075971 AY164384 delta clone BLIB-74 2.28.4.1.1.026 OTU 1 seq prokMSA_id:076062 AY164455 clone ULIB-98 2.28.4.1.1.027 OTU 2 seqs prokMSA_id:077055 AY164340 clone ALIB-16 prokMSA_id:076397 AY164393 clone DLIB-14 2.28.4.1.1.028 OTU 1 seq prokMSA_id:076809 AY164412 clone DLIB-6 2.28.4.1.1.029 OTU 1 seq prokMSA_id:083048 AY226217 delta clone ABBB-59 2.28.4.1.1.030 OTU 1 seq prokMSA_id:083151 AY226224 delta clone ABBB-78 2.28.4.1.1.031 OTU 1 seq prokMSA_id:083169 AY226213 delta clone ABBB-52 2.28.4.1.1.032 OTU 1 seq prokMSA_id:086424 AY226229 delta clone ABBB-90 2.28.4.1.1.033 OTU 1 seq prokMSA_id:088068 AY245457 delta clone ML17_DSV1 2.28.4.1.1.999 poor quality 25 seqs prokMSA_id:044841 AB062688 clone:DGGE band B prokMSA_id:073676 AB081542 Oil-MT3-9 prokMSA_id:068234 AF365490 clone BM89MF5BA4 prokMSA_id:068055 AF365692 clone BT60DS1BC11 prokMSA_id:068052 AF365696 clone BT60DS1BC7 prokMSA_id:068020 AF365733 clone BT60DS4BB8 prokMSA_id:042782 AF429007 clone CR99-35-49 prokMSA_id:032998 AJ421200 clone C3-K4 prokMSA_id:052880 AJ421892 clone Alt9-K47 prokMSA_id:020536 AJ421896 clone Alt9-K55 prokMSA_id:084655 AJ495661 delta isolate SB-15 prokMSA_id:083685 AJ495669 delta isolate SB-23 prokMSA_id:085965 AJ495670 delta isolate SB-24 prokMSA_id:083586 AJ495675 delta isolate SB-29 prokMSA_id:084618 AJ495679 delta isolate SB-33 prokMSA_id:083980 AJ495688 delta isolate SB-43 prokMSA_id:084997 AJ495689 delta isolate SB-44 prokMSA_id:084295 AJ495690 delta isolate SB-45 prokMSA_id:079477 AY180080 symbiont of Aplysina cavernicola isolate DGGE gel band 5 prokMSA_id:079555 AY180087 symbiont of Aplysina cavernicola isolate DGGE gel band 12 prokMSA_id:086462 AY242640 soil clone Tc127-80 prokMSA_id:089242 AY245458 delta clone ML21_DSV6 prokMSA_id:088235 AY245459 delta clone ML23_DSV1 prokMSA_id:089213 AY245461 delta clone ML28_DSV1 prokMSA_id:086983 AY261411 clone RFLP U57 2.28.4.1.2 DFN.LACUSTRE 8 seqs 2.28.4.1.2.003 OTU 3 seqs prokMSA_id:024344 AF373920 Desulfonatronum sp. MLF1 prokMSA_id:073563 AF418171 Desulfonatronum lacustre DSM 10312 prokMSA_id:010408 Y14594 Desulfonatronum lacustre str. z-7951. 2.28.4.1.2.004 OTU 1 seq prokMSA_id:078541 AY181045 clone 1026B15 2.28.4.1.2.999 poor quality 4 seqs prokMSA_id:066313 AF507009 Br-14 prokMSA_id:034278 AJ010105 Desulfonatronum sp. clone DsvA prokMSA_id:071079 AJ297625 clone C44K52 prokMSA_id:083891 AY226314 clone DBBB-86 2.28.4.1.3 DMB.BACULATUM_SUBGROUP 109 seqs 2.28.4.1.3.001 OTU 1 seq prokMSA_id:010421 U02469 Desulfomicrobium escambiense str. ESC1 ATCC 51164 . 2.28.4.1.3.004 OTU 39 seqs prokMSA_id:086896 AB110539 Desulfomicrobium sp. MSL65 prokMSA_id:086814 AB110543 Desulfomicrobium sp. MSL92 prokMSA_id:087059 AB110544 Desulfomicrobium sp. MSL93 prokMSA_id:088006 AB110545 Desulfomicrobium sp. MSL94 prokMSA_id:086905 AB110546 Desulfomicrobium sp. MSL95 prokMSA_id:087574 AB110547 Desulfomicrobium sp. MSL97 prokMSA_id:010418 AF030438 Desulfomicrobium baculatum str. strain X VKM B-1378 . prokMSA_id:050942 AF131233 Desulfomicrobium sp. 'Bendigo B' prokMSA_id:010415 AF132738 Desulfomicrobium hypogeium str. CN-A. prokMSA_id:044472 AF228116 Desulfomicrobium apsheronum strain La2.1 prokMSA_id:033078 AF228118 Desulfomicrobium apsheronum strain La2.3 prokMSA_id:048575 AF228120 Desulfomicrobium apsheronum strain Ac1.2 prokMSA_id:026424 AF228122 Desulfomicrobium apsheronum strain Ac2.2 prokMSA_id:021055 AF228124 Desulfomicrobium apsheronum strain Ac3.2 prokMSA_id:047218 AF228125 Desulfomicrobium apsheronum strain Ac4.2 prokMSA_id:035827 AF228126 Desulfomicrobium apsheronum strain Ac5.1 prokMSA_id:031538 AF228129 Desulfomicrobium apsheronum strain Pr2.1 prokMSA_id:034773 AF228130 Desulfomicrobium apsheronum strain Pr3.2 prokMSA_id:023402 AF228131 Desulfomicrobium apsheronum strain Pr5.2 prokMSA_id:042335 AF228132 Desulfomicrobium apsheronum strain Bu2.2 prokMSA_id:029400 AF228133 Desulfomicrobium apsheronum strain bu4.1 prokMSA_id:026448 AF228134 Desulfomicrobium apsheronum strain bu5.1 prokMSA_id:028364 AF228135 Desulfomicrobium apsheronum strain be1.1 prokMSA_id:033377 AF228136 Desulfomicrobium apsheronum strain be2.2 prokMSA_id:026963 AF228137 Desulfomicrobium apsheronum strain be3.1 prokMSA_id:019909 AF228138 Desulfomicrobium apsheronum strain be4.1 prokMSA_id:018556 AF228139 Desulfomicrobium apsheronum strain be5.2 prokMSA_id:072167 AF280859 mle1-31 prokMSA_id:072930 AF360633 Desulfomicrobium sp. CME2 prokMSA_id:064335 AF443593 Desulfomicrobium sp. 'Delta +' prokMSA_id:038826 AJ006611 Desulfomicrobium sp. strain STP10 prokMSA_id:010414 AJ237604 Desulfobacterium macestii str. sulfide spring DSM 4194. prokMSA_id:033526 AJ277886 Desulfomicrobium escambiense strain DSM 10707T prokMSA_id:017898 AJ277894 Desulfomicrobium baculatum strain DSM 4028T prokMSA_id:050324 AJ277895 Desulfomicrobium baculatum strain DSM 2555 prokMSA_id:021280 AJ277896 Desulfomicrobium baculatum strain DSM 1742 prokMSA_id:054500 AJ277897 Desulfomicrobium norvegicum strain DSM 1741T prokMSA_id:010412 X95570 clone Aspo1. prokMSA_id:010413 X99505 Desulfomicrobium sp. str. STL8. 2.28.4.1.3.005 OTU 11 seqs prokMSA_id:023777 AJ251623 Desulfomicrobium orale strain DSM12838 prokMSA_id:031560 AJ251624 Desulfomicrobium orale strain NY679 prokMSA_id:072389 AJ251626 Desulfomicrobium orale strain NY681 prokMSA_id:069839 AJ251627 Desulfomicrobium orale strain NY683 prokMSA_id:030927 AJ251628 Desulfomicrobium orale strain NY676 prokMSA_id:073693 AY083018 delta clone P4-13 prokMSA_id:071073 AY083019 delta clone P4-14 prokMSA_id:071904 AY083020 delta clone P4-15 prokMSA_id:071263 AY083021 delta clone P4-17 prokMSA_id:070990 AY083022 delta clone P1-1 prokMSA_id:069810 AY083023 delta clone P4-16 2.28.4.1.3.006 OTU 1 seq prokMSA_id:030749 AF364917 clone clB27 2.28.4.1.3.007 OTU 1 seq prokMSA_id:043622 AF220316 O11G2 2.28.4.1.3.008 OTU 1 seq prokMSA_id:067159 AY094110 Bdellovibrio sp. Cancun1B 2.28.4.1.3.009 OTU 1 seq prokMSA_id:073288 AF228113 Desulfomicrobium sp. La1.1 2.28.4.1.3.010 OTU 1 seq prokMSA_id:087989 AB110548 Desulfomicrobium sp. MSL98 2.28.4.1.3.999 poor quality 53 seqs prokMSA_id:035230 AB036497 KH1-2-08 prokMSA_id:026109 AB062618 sulfate-reducing clone:DSV16 prokMSA_id:024842 AB069769 sulfate-reducing clone:22V prokMSA_id:089693 AB097945 sulfate-reducing clone: Biofilm13 prokMSA_id:090131 AB097946 sulfate-reducing clone: Biofilm31 prokMSA_id:088899 AB097948 sulfate-reducing clone: Biofilm52 prokMSA_id:088938 AB097954 sulfate-reducing clone: Acetate43 prokMSA_id:047794 AF132860 Desulfomicrobium sp. 'Scale sediment' prokMSA_id:040533 AF132861 Desulfomicrobium sp. 'Scale 7m' prokMSA_id:024686 AF132862 Desulfomicrobium sp. 'Scale 10m' prokMSA_id:018505 AF132863 Desulfomicrobium sp. 'Scale 9m' prokMSA_id:074875 AF132864 Desulfomicrobium sp. 'Clear 59m' prokMSA_id:049898 AF228117 Desulfomicrobium apsheronum strain La2.2 prokMSA_id:018340 AF228121 Desulfomicrobium apsheronum strain Ac2.1 prokMSA_id:035534 AF228123 Desulfomicrobium apsheronum strain Ac3.1 prokMSA_id:044008 AF228140 Marine sediment DGGE band a prokMSA_id:072522 AF360635 delta prokMSA_id:048917 AF360636 delta clone HD-RNA10 prokMSA_id:067744 AF423375 Acidobacteria/Holophaga group isolate DGGE band L3 prokMSA_id:081860 AF510402 Desulfomicrobium sp. AR1902/01 prokMSA_id:018808 AJ006610 Desulfomicrobium sp. strain STP16 prokMSA_id:046955 AJ006618 Desulfomicrobium sp. strain STP4 prokMSA_id:027981 AJ251625 Desulfomicrobium orale strain NY680 prokMSA_id:073344 AJ251629 Desulfomicrobium orale strain NY677 prokMSA_id:074529 AJ289718 Desulfomicrobium apsheronum strain KB1 prokMSA_id:040610 AJ289720 Desulfomicrobium apsheronum strain KB3 prokMSA_id:045055 AJ289721 Desulfomicrobium apsheronum strain KB4 prokMSA_id:031955 AJ289723 Desulfomicrobium apsheronum strain KB10 prokMSA_id:017576 AJ289725 Desulfomicrobium apsheronum strain KB21 prokMSA_id:016971 AJ289726 Desulfomicrobium apsheronum strain KB30 prokMSA_id:050150 AJ289729 Desulfomicrobium apsheronum strain KB36 prokMSA_id:031112 AJ289732 Desulfomicrobium apsheronum strain KB45 prokMSA_id:027414 AJ289733 Desulfomicrobium apsheronum strain KB46A prokMSA_id:023126 AJ289734 Desulfomicrobium apsheronum strain KB46B prokMSA_id:046401 AJ289740 Desulfomicrobium apsheronum strain RS10A prokMSA_id:048208 AJ289741 Desulfomicrobium apsheronum strain RS10B prokMSA_id:032839 AJ289748 Desulfomicrobium apsheronum strain RS26 prokMSA_id:018534 AJ289749 Desulfomicrobium apsheronum strain RS35 prokMSA_id:039814 AJ289750 Desulfomicrobium apsheronum strain RS36 prokMSA_id:042715 AJ289753 Desulfomicrobium apsheronum strain RS46 prokMSA_id:021694 AJ306704 Desulfomicrobium sp. strain MLB-SRB12 prokMSA_id:086449 AY092389 clone BF44 prokMSA_id:089841 AY304032 soil clone Dpcom71 prokMSA_id:010410 M37311 Desulfomicrobium baculatum DSM 1743. prokMSA_id:010411 M37312 Desulfomicrobium norvegicum str. Norway 4 NCIMB 8310 . prokMSA_id:010416 U46526 clone DVIB104. prokMSA_id:010417 U46527 clone DVIB115. prokMSA_id:010419 U64865 Desulfomicrobium apsheronum str. 1105 DSM 5918 . prokMSA_id:010420 X84512 str. SBR1080. prokMSA_id:010409 Z69306 str. s2. prokMSA_id:024129 Z82958 sp. clone group T1A prokMSA_id:023616 Z82962 sp. clone group T5A prokMSA_id:050856 Z96938 strain MR3B 2.28.4.1.4 DESULFOVIBRIO_SUBGROUP 400 seqs 2.28.4.1.4.1 DSV.HALOPHILUS_SUBGROUP 76 seqs 2.28.4.1.4.1.001 OTU 6 seqs prokMSA_id:010440 L42995 Desulfovibrio sp. str. Solar Lake. prokMSA_id:071182 L42995 Desulfovibrio sp. prokMSA_id:010438 U33316 Desulfovibrio sp. str. PIB. prokMSA_id:010437 U48243 Desulfovibrio halophilus DSM 5663 . prokMSA_id:010439 U53463 Desulfovibrio sp. SEBR 6143. prokMSA_id:010436 X99237 Desulfovibrio halophilus DSM 5663 . 2.28.4.1.4.1.005 OTU 1 seq prokMSA_id:010429 X95230 Desulfovibrio aespoeensis. 2.28.4.1.4.1.006 OTU 3 seqs prokMSA_id:072826 AF418172 Desulfovibrio profundus DSM 11384 prokMSA_id:080009 AJ544687 Desulfovibrio brasiliensis strain LVform1 prokMSA_id:010427 U90726 Desulfovibrio profundus str. 500-1 DSM 11384 . 2.28.4.1.4.1.007 OTU 2 seqs prokMSA_id:032600 AF228114 Desulfovibrio sp. La1.2 prokMSA_id:023150 AF228115 Desulfovibrio sp. La1.3 2.28.4.1.4.1.009 OTU 5 seqs prokMSA_id:028548 AF058012 RFLP144 prokMSA_id:046032 AF295740 isolate RFLP 144 prokMSA_id:087605 AY281345 Desulfovibrio sp. ANP3 prokMSA_id:010431 U53465 Desulfovibrio caledoniensis SEBR 7250. prokMSA_id:010430 U85475 Desulfovibrio BG50 str. BG50. 2.28.4.1.4.1.010 OTU 1 seq prokMSA_id:030839 AF230530 Desulfovibrio dechloracetivorans 2.28.4.1.4.1.011 OTU 1 seq prokMSA_id:041727 AJ300518 sulphate reducing DSV-DSa99-2 2.28.4.1.4.1.012 OTU 1 seq prokMSA_id:043170 AF228128 Desulfovibrio sp. Pr1.2 2.28.4.1.4.1.013 OTU 1 seq prokMSA_id:048166 AF295109 marine anaerobic 90d4 2.28.4.1.4.1.014 OTU 1 seq prokMSA_id:051052 AF364916 clone clB80 2.28.4.1.4.1.015 OTU 1 seq prokMSA_id:054085 AF228127 Desulfovibrio sp. Ac5.2 2.28.4.1.4.1.016 OTU 1 seq prokMSA_id:060729 AF455058 clone B4 2.28.4.1.4.1.017 OTU 1 seq prokMSA_id:070595 X91430 sp. clone group A7hq 2.28.4.1.4.1.018 OTU 1 seq prokMSA_id:087245 AB110541 Desulfovibrionaceae MSL79 2.28.4.1.4.1.019 OTU 1 seq prokMSA_id:087949 AY281344 Desulfovibrio sp. AND1 2.28.4.1.4.1.020 OTU 2 seqs prokMSA_id:091249 AY330660 delta isolate 1 prokMSA_id:091952 AY330693 delta clone A62 2.28.4.1.4.1.999 poor quality 47 seqs prokMSA_id:047638 AF234891 Desulfovibrio sp. EX265 prokMSA_id:022733 AF295742 isolate RFLP 182 prokMSA_id:052272 AF295749 isolate RFLP 413 prokMSA_id:047019 AF295753 isolate RFLP 420 prokMSA_id:051569 AF295757 isolate RFLP 427 prokMSA_id:081537 AF466711 Desulfovibrio sp. clone DBS8 prokMSA_id:021118 AF473909 delta 128-12 prokMSA_id:035204 AF473922 128-28 prokMSA_id:033012 AF473924 128-3-12 prokMSA_id:045874 AF473968 delta 34-35 prokMSA_id:081469 AF510394 Desulfovibrio sp. LS1101/00 prokMSA_id:081817 AF510397 Desulfovibrio sp. AR1104/00 prokMSA_id:082043 AF510408 isolate TGGE gel band B29 prokMSA_id:081043 AF510409 isolate TGGE gel band B30 prokMSA_id:081221 AF510410 isolate TGGE gel band B37 prokMSA_id:059929 AF538275 delta DGGE gel band 3 prokMSA_id:070680 AF544870 delta clone D1-6 prokMSA_id:069751 AF544874 delta clone D1-10 prokMSA_id:072992 AF544884 delta clone D1-46 prokMSA_id:039631 AJ289724 Desulfovibrio caledoniensis strain KB20 prokMSA_id:033453 AJ289745 Desulfovibrio caledoniensis strain RS20A prokMSA_id:016846 AJ289746 Desulfovibrio caledoniensis strain RS20B prokMSA_id:021621 AY038416 clone CD5F1 prokMSA_id:025063 AY038431 clone CD5B2 prokMSA_id:094208 AY329094 delta clone M1+BC3 prokMSA_id:093867 AY329103 delta clone M1-BC6 prokMSA_id:091669 AY330662 delta clone A2 prokMSA_id:091795 AY330664 delta clone A10 prokMSA_id:091407 AY330666 delta clone A3 prokMSA_id:091799 AY330668 delta clone A7 prokMSA_id:091035 AY330669 delta clone A8 prokMSA_id:091215 AY330679 delta clone A24 prokMSA_id:091933 AY330681 delta clone A63 prokMSA_id:091690 AY330685 delta clone A46 prokMSA_id:091535 AY330689 delta clone A55 prokMSA_id:094349 AY374752 delta clone PI_r154_c2 prokMSA_id:010428 L40789 Desulfovibrio sp. prokMSA_id:030593 L40814 Desulfovibrio sp. prokMSA_id:010432 U46522 clone DVIB57. prokMSA_id:010433 U46532 clone DVIB149. prokMSA_id:010422 X91429 clone A6hq. prokMSA_id:010423 X91430 clone A7hq. prokMSA_id:010425 X91431 clone A8h. prokMSA_id:010424 X91432 clone A9h. prokMSA_id:010426 X91433 clone A10h. prokMSA_id:010434 Z69309 str. s5. prokMSA_id:010435 Z69325 str. s21. 2.28.4.1.4.2 DSV.ZOSTERAE_SUBGROUP 42 seqs 2.28.4.1.4.2.001 OTU 2 seqs prokMSA_id:092508 AY359868 Desulfovibrio bastinii strain SRL 4225 prokMSA_id:010445 U53462 Desulfovibrio bastinii SEBR 4225. 2.28.4.1.4.2.002 OTU 1 seq prokMSA_id:010444 X95231 clone Aspo3. 2.28.4.1.4.2.003 OTU 1 seq prokMSA_id:010442 Y18049 Desulfovibrio zosterae str. lac. 2.28.4.1.4.2.004 OTU 1 seq prokMSA_id:056227 AF458778 Desulfovibrio hydrothermalis 2.28.4.1.4.2.005 OTU 1 seq prokMSA_id:030757 AY038523 clone CD4B6 2.28.4.1.4.2.006 OTU 1 seq prokMSA_id:046775 AY038515 delta clone CD4C5 2.28.4.1.4.2.007 OTU 1 seq prokMSA_id:077984 AY171320 clone s75 2.28.4.1.4.2.009 OTU 1 seq prokMSA_id:093334 AY329109 delta clone M2+BC7 2.28.4.1.4.2.011 OTU 6 seqs prokMSA_id:093485 AY329147 delta clone M4-C13 prokMSA_id:094142 AY329152 delta clone M4-C72 prokMSA_id:093389 AY329154 delta clone M4-C74 prokMSA_id:093353 AY329158 delta clone M5+C35 prokMSA_id:093833 AY329162 delta clone M5+C87 prokMSA_id:091854 AY330661 delta isolate 2 2.28.4.1.4.2.012 OTU 1 seq prokMSA_id:093445 AY329150 delta clone M4-C24 2.28.4.1.4.2.013 OTU 1 seq prokMSA_id:093559 AY329159 delta clone M5+C39 2.28.4.1.4.2.014 OTU 1 seq prokMSA_id:094066 AY329105 delta clone M2+BC4 2.28.4.1.4.2.015 OTU 1 seq prokMSA_id:094068 AY329146 delta clone M4-C75 2.28.4.1.4.2.999 poor quality 23 seqs prokMSA_id:024752 AF473944 delta 128-9-6 prokMSA_id:073486 AF544942 delta clone 4-7-6 prokMSA_id:094135 AY329091 delta clone M1+BC14 prokMSA_id:093906 AY329106 delta clone M2+BC2 prokMSA_id:093830 AY329108 delta clone M2+BC6 prokMSA_id:093656 AY329110 delta clone M2+BC8 prokMSA_id:093528 AY329111 delta clone M2+BC9 prokMSA_id:094277 AY329149 delta clone M4-C21 prokMSA_id:093341 AY329151 delta clone M4-C71 prokMSA_id:094181 AY329153 delta clone M4-C73 prokMSA_id:094030 AY329155 delta clone M5+C81 prokMSA_id:093975 AY329156 delta clone M5+C31 prokMSA_id:094071 AY329157 delta clone M5+C34 prokMSA_id:093259 AY329161 delta clone M5+C83 prokMSA_id:093970 AY329165 delta clone M5-C41 prokMSA_id:091679 AY330676 delta clone A16 prokMSA_id:091761 AY330677 delta clone A17 prokMSA_id:091411 AY330682 delta clone A31 prokMSA_id:091637 AY330684 delta clone A33 prokMSA_id:010447 L40783 Desulfovibrio sp. prokMSA_id:010441 M34401 Desulfovibrio salexigens ATCC 14822 . prokMSA_id:010443 U46518 clone DVIB16. prokMSA_id:010446 Z69312 str. s8. 2.28.4.1.4.3 DSV.SENEZII_SUBGROUP 5 seqs 2.28.4.1.4.3.001 OTU 2 seqs prokMSA_id:010448 AF050100 Desulfovibrio senezii str. CVL DSM 8436 . prokMSA_id:010449 U52959 Desulfovibrio sp. str. CVH2. 2.28.4.1.4.3.999 poor quality 3 seqs prokMSA_id:081753 AF510396 Desulfovibrio sp. AR1103 prokMSA_id:081264 AF510398 Desulfovibrio sp. AR1201/00 prokMSA_id:010450 M37316 Desulfovibrio desulfuricans str. E1 Agheila Z NCIMB 8380. 2.28.4.1.4.4 DSV.LONGUS_SUBGROUP 11 seqs 2.28.4.1.4.4.001 OTU 2 seqs prokMSA_id:081681 AJ548465 Desulfovibrio sp. LVform6 strain LVform6 prokMSA_id:010452 U53464 Desulfovibrio gracilis SEBR 6116. 2.28.4.1.4.4.002 OTU 3 seqs prokMSA_id:055536 AB077443 sulfate-reducing clone:sediment-1 prokMSA_id:059878 AB077448 sulfate-reducing clone:sediment-6 prokMSA_id:059872 AB077454 sulfate-reducing clone:sediment-13 2.28.4.1.4.4.003 OTU 1 seq prokMSA_id:059880 AB077449 sulfate-reducing clone:sediment-7 2.28.4.1.4.4.004 OTU 1 seq prokMSA_id:059883 AB077444 sulfate-reducing clone:sediment-2 2.28.4.1.4.4.005 OTU 1 seq prokMSA_id:092302 AY359867 Desulfovibrio longus strain DSM 6739 2.28.4.1.4.4.999 poor quality 3 seqs prokMSA_id:069814 AF360634 Desulfovibrio sp. CME3 prokMSA_id:010453 U46530 clone DVIB137. prokMSA_id:010451 X63623 Desulfovibrio longus str. SEBR 2582. 2.28.4.1.4.5 DSV.AMINOPHILUS_SUBGROUP 39 seqs 2.28.4.1.4.5.002 OTU 2 seqs prokMSA_id:010454 AF067964 Desulfovibrio aminophilus str. ALA-3. prokMSA_id:077555 AF482438 clone R2b32 2.28.4.1.4.5.003 OTU 1 seq prokMSA_id:019551 AF227984 Desulfovibrio mexicoense 2.28.4.1.4.5.004 OTU 2 seqs prokMSA_id:066106 AB074946 delta clone:KB1 prokMSA_id:034507 AF423185 Toluene-degrading methanogenic consortium Eub 5 2.28.4.1.4.5.005 OTU 1 seq prokMSA_id:044516 AF447131 clone TDC-006 2.28.4.1.4.5.007 OTU 15 seqs prokMSA_id:066104 AB074947 delta clone:KB33 prokMSA_id:059881 AB077446 sulfate-reducing clone:sediment-4 prokMSA_id:059882 AB077447 sulfate-reducing clone:sediment-5 prokMSA_id:059877 AB077450 sulfate-reducing clone:sediment-8 prokMSA_id:056431 AB077455 sulfate-reducing clone:sediment-15 prokMSA_id:010455 AF109470 Desulfovibrio zt31 str. zt3l. prokMSA_id:010456 AF193026 Desulfovibrio Mlhm str. Mlhm. prokMSA_id:034808 AF295660 Desulfovibrio sp. 160 prokMSA_id:051153 AF407202 clone GIF11 prokMSA_id:044333 AJ006613 Desulfovibrio sp. strain STL13 prokMSA_id:010458 AJ012593 unnamed organism. prokMSA_id:010457 AJ133797 Desulfovibrio sp. prokMSA_id:096653 AJ582755 Desulfovibrio ferrireducens strain CY1 prokMSA_id:096567 AJ582758 Desulfovibrio ferrireducens strain CY2 prokMSA_id:082207 AY214190 clone ZZ14C2 2.28.4.1.4.5.008 OTU 2 seqs prokMSA_id:095002 AJ515723 Deferribacteres clone 62 prokMSA_id:094963 AJ515724 Deferribacteres clone 91 2.28.4.1.4.5.999 poor quality 16 seqs prokMSA_id:041117 AB011326 clone: MUG34 prokMSA_id:031836 AB047114 OCG4 prokMSA_id:049441 AB047115 OCG4' prokMSA_id:021260 AB069770 sulfate-reducing clone:72V prokMSA_id:048517 AB069771 sulfate-reducing clone:78V prokMSA_id:018979 AF364919 clone clB60 prokMSA_id:022062 AF422843 antarctic soil clone bh4.46 prokMSA_id:034025 AJ006603 Desulfovibrio sp. strain STP1 prokMSA_id:036480 AJ006614 Desulfovibrio sp. strain STP8 prokMSA_id:071977 AJ010107 Desulfovibrio sp. clone DsvC prokMSA_id:073954 AJ249261 DCE36 prokMSA_id:059900 AY133095 delta clone ccslm261 prokMSA_id:086521 AY256592 DGGE band S2-16 prokMSA_id:084809 AY271754 delta clone 6 prokMSA_id:010460 U46525 clone DVIB103. prokMSA_id:010459 X99502 Desulfovibrio sp. str. STL10. 2.28.4.1.4.6 DSV.AFRICANUS_SUBGROUP 65 seqs 2.28.4.1.4.6.001 OTU 1 seq prokMSA_id:010478 X99236 Desulfovibrio africanus DSM 2603 . 2.28.4.1.4.6.002 OTU 3 seqs prokMSA_id:010470 AF053751 Desulfovibrio alcoholovorans str. SPSN DSM 5433 . prokMSA_id:010475 AJ012592 unnamed organism. prokMSA_id:091676 AY340829 clone SR_FBR_E70 2.28.4.1.4.6.003 OTU 2 seqs prokMSA_id:091448 AY340826 clone SR_FBR_E38 prokMSA_id:010474 U81725 clone vadinHA40. 2.28.4.1.4.6.004 OTU 1 seq prokMSA_id:010473 Y17764 Desulfovibrio sulfodismutans str. ThAcO1. 2.28.4.1.4.6.005 OTU 4 seqs prokMSA_id:010464 Y17755 Desulfovibrio sp. str. VeLac3. prokMSA_id:010465 Y17756 Desulfovibrio sp. str. DR14. prokMSA_id:010472 Y17757 Desulfovibrio sp. str. DR10. prokMSA_id:010466 Y17758 Desulfovibrio sp. str. DR1. 2.28.4.1.4.6.006 OTU 1 seq prokMSA_id:010471 AF109469 Desulfovibrio zt10e str. zt10e. 2.28.4.1.4.6.007 OTU 1 seq prokMSA_id:010469 AF177276 Desulfovibrio inopinatus str. HHQ 20. 2.28.4.1.4.6.008 OTU 1 seq prokMSA_id:010468 AJ012594 unnamed organism. 2.28.4.1.4.6.010 OTU 1 seq prokMSA_id:010463 U85468 Desulfovibrio BG6 str. BG6. 2.28.4.1.4.6.012 OTU 4 seqs prokMSA_id:010462 AF053752 Desulfovibrio burkinensis str. HDv DSM 6830 . prokMSA_id:010467 AF159119 Desulfovibrio GWE2 str. GWE2. prokMSA_id:096025 AY371268 clone Dpcom128 prokMSA_id:073426 D43944 Desulfovibrio magneticus 2.28.4.1.4.6.013 OTU 1 seq prokMSA_id:010461 D43944 str. RS-1. 2.28.4.1.4.6.015 OTU 1 seq prokMSA_id:018998 AF332708 clone UASB_brew_B4 2.28.4.1.4.6.017 OTU 8 seqs prokMSA_id:059879 AB077445 sulfate-reducing clone:sediment-3 prokMSA_id:059875 AB077452 sulfate-reducing clone:sediment-10 prokMSA_id:028436 AJ300517 sulphate reducing DSV-DSa99-1 prokMSA_id:024145 AJ300519 sulphate reducing DSV-DSa99-3 prokMSA_id:052050 AJ300520 sulphate reducing DSV-DSa99-4 prokMSA_id:016323 AJ300521 sulphate reducing DSV-DSa99-5 prokMSA_id:039060 AJ300522 sulphate reducing DSV-DSa99-6 prokMSA_id:051837 AJ300523 sulphate reducing DSV-DSa99-7 2.28.4.1.4.6.018 OTU 1 seq prokMSA_id:032796 AF332718 clone UASB_brew_B82 2.28.4.1.4.6.019 OTU 1 seq prokMSA_id:055346 AJ306787 clone SHA-41 2.28.4.1.4.6.020 OTU 1 seq prokMSA_id:038013 AJ390485 soil PBS-18 2.28.4.1.4.6.021 OTU 1 seq prokMSA_id:041341 AF058011 RFLP109 2.28.4.1.4.6.022 OTU 1 seq prokMSA_id:045807 AF170769 Cytophagales QSSC8L-9 2.28.4.1.4.6.023 OTU 1 seq prokMSA_id:066105 AB074948 delta clone:KB47 2.28.4.1.4.6.024 OTU 1 seq prokMSA_id:074366 AF364918 clone clB03 2.28.4.1.4.6.025 OTU 1 seq prokMSA_id:075268 AY159198 RO_clone_68 2.28.4.1.4.6.026 OTU 1 seq prokMSA_id:086354 AY226207 delta clone ABBB-4 2.28.4.1.4.6.027 OTU 1 seq prokMSA_id:091518 AY340820 clone SR_FBR_E5 2.28.4.1.4.6.999 poor quality 26 seqs prokMSA_id:073239 AB069767 clone:DGGE-band 3 prokMSA_id:031095 AB069768 sulfate-reducing clone:2V prokMSA_id:089828 AB097947 sulfate-reducing clone: Biofilm43 prokMSA_id:089507 AB097950 sulfate-reducing clone: Hydrogen10 prokMSA_id:010476 AF050101 Desulfovibrio fructosovorans str. JJ DSM 3604 . prokMSA_id:038332 AF078201 Grassland soil clone saf1_205 prokMSA_id:034926 AF096599 isolate BSR27 prokMSA_id:037362 AF332716 clone UASB_brew_B53 prokMSA_id:018939 AF422651 clone d044F prokMSA_id:054535 AF422652 clone d044R prokMSA_id:081057 AF510405 Desulfovibrio sp. LS2001/01 prokMSA_id:081520 AF510406 Desulfovibrio sp. LS2003/01 prokMSA_id:072530 AJ238365 DGGE band 7 prokMSA_id:044400 AJ238366 DGGE band 6 prokMSA_id:046787 AJ238372 DGGE band 2 prokMSA_id:058344 AJ489421 clone NS-H11 prokMSA_id:080648 AY192278 candidate division BD clone W3-2C prokMSA_id:085101 AY256594 DGGE band S5-8 prokMSA_id:094429 AY374873 delta clone PI_6BF05 prokMSA_id:094934 AY374875 delta clone PI_6SG07 prokMSA_id:094372 AY374891 delta clone PI_6UC06 prokMSA_id:094696 AY374960 delta clone PI_r33_c3 prokMSA_id:094980 AY374973 delta clone PI_r65_c2 prokMSA_id:010477 M37315 Desulfovibrio africanus. prokMSA_id:032765 U81739 clone vadinHA62 prokMSA_id:010479 X91272 Bangombe boreholes at depth of 5-105m clone G20. 2.28.4.1.4.7 DSV.GABONENSIS_SUBGROUP 12 seqs 2.28.4.1.4.7.003 OTU 3 seqs prokMSA_id:037664 AY062930 Desulfovibrio sp. Met 82 prokMSA_id:010480 U31080 Desulfovibrio gabonensis SEBR 2840 . prokMSA_id:026629 Y09504 D.indonensis 2.28.4.1.4.7.004 OTU 1 seq prokMSA_id:068874 AF418170 Desulfovibrio giganteus DSM 4370 2.28.4.1.4.7.005 OTU 1 seq prokMSA_id:059874 AB077453 sulfate-reducing clone:sediment-12 2.28.4.1.4.7.999 poor quality 7 seqs prokMSA_id:010481 AF027048 clone OPS3. prokMSA_id:017017 AJ290983 SHE-137 prokMSA_id:082856 AJ495648 delta isolate SB-1 prokMSA_id:083565 AJ495673 delta isolate SB-27 prokMSA_id:010484 M34400 Desulfovibrio gigas ATCC 19364 . prokMSA_id:010482 U46523 clone DVIB77. prokMSA_id:010483 U46529 clone DVIB128. 2.28.4.1.4.8 DSV.CUNEATUS_SUBGROUP 16 seqs 2.28.4.1.4.8.001 OTU 2 seqs prokMSA_id:018898 AJ006601 Desulfovibrio sp. strain STL5 prokMSA_id:010486 X99501 Desulfovibrio cuneatus str. STL1 DSM 11391 . 2.28.4.1.4.8.002 OTU 2 seqs prokMSA_id:017273 AJ006615 Desulfovibrio sp. strain STP9 prokMSA_id:010485 X99504 Desulfovibrio litoralis str. STL6 DSM 11393 . 2.28.4.1.4.8.003 OTU 1 seq prokMSA_id:078137 AB089110 delta clone:Rs-N35 2.28.4.1.4.8.999 poor quality 11 seqs prokMSA_id:029638 AF141505 delta clone CRE-PA18 prokMSA_id:042941 AJ006599 Desulfovibrio sp. strain STL2 prokMSA_id:042989 AJ006600 Desulfovibrio sp. strain STL3 prokMSA_id:046502 AJ006602 Desulfovibrio sp. strain STL7 prokMSA_id:037516 AJ006612 Desulfovibrio sp. strain STL12 prokMSA_id:030831 AJ006616 Desulfovibrio sp. strain STP7 prokMSA_id:034870 AJ006617 Desulfovibrio sp. strain STP5 prokMSA_id:070101 AJ132936 Desulfovibrio sp. clone FSCII prokMSA_id:072059 AJ132937 Desulfovibrio sp. clone FSCI prokMSA_id:037887 AJ132938 Desulfovibrio sp. clone FSC4 prokMSA_id:010487 X99503 Desulfovibrio sp. str. STL4. 2.28.4.1.4.9 LW.INTRACELLULARIS_SUBGROUP 12 seqs 2.28.4.1.4.9.001 OTU 1 seq prokMSA_id:010497 L35148 Bilophila wadsworthia. 2.28.4.1.4.9.002 OTU 7 seqs prokMSA_id:010491 L15739 symbiont of Sus scrofa. prokMSA_id:010489 U06423 symbiont of intracellular ileal symbiont of Mesocricetus auratus. prokMSA_id:010496 U07570 Desulfovibrio sp. str. MIT 87-599. prokMSA_id:074139 U07570 Desulfovibrio sp. prokMSA_id:010490 U30147 Lawsonia intracellularis str. 1482/89 NCTC 12656 . prokMSA_id:072733 U30147 Lawsonia intracellularis prokMSA_id:010492 U65995 Lawsonia intracellularis. 2.28.4.1.4.9.999 poor quality 4 seqs prokMSA_id:010488 U07569 Desulfovibrio sp. prokMSA_id:010493 U65996 Lawsonia intracellularis. prokMSA_id:010494 U65997 Lawsonia intracellularis. prokMSA_id:010495 U65998 Lawsonia intracellularis. 2.28.4.1.4.10 DSV.LONGREACHENSIS_SUBGROUP 54 seqs 2.28.4.1.4.10.001 OTU 2 seqs prokMSA_id:010508 AF090830 Desulfovibrio TBP-1 str. TBP-1. prokMSA_id:010506 U32578 Desulfovibrio acrylicus str. W218 DSM 10141 . 2.28.4.1.4.10.002 OTU 2 seqs prokMSA_id:010507 X93994 Desulfovibrio sp. prokMSA_id:028397 Y11984 Desulfovibrio alaskensis strain NCIMB 13491 2.28.4.1.4.10.003 OTU 8 seqs prokMSA_id:059868 AB077460 sulfate-reducing clone:oil-7 prokMSA_id:059865 AB077462 sulfate-reducing clone:oil-9 prokMSA_id:059864 AB077463 sulfate-reducing clone:oil-10 prokMSA_id:059862 AB077466 sulfate-reducing clone:oil-13 prokMSA_id:034844 AF131234 Desulfovibrio sp. 'Bendigo A' prokMSA_id:036540 AF418179 Desulfovibrio vulgaris DSM 644 prokMSA_id:093184 AY362360 Desulfovibrio vulgaris strain I5 prokMSA_id:010505 X86689 Desulfovibrio sp. str. DMB. 2.28.4.1.4.10.004 OTU 10 seqs prokMSA_id:039982 AF273083 Desulfovibrio oryzae prokMSA_id:026806 AJ295669 Desulfovibrio sp. IrT-JG1-71 prokMSA_id:046889 AJ295670 Desulfovibrio sp. IrT-JG1-58 prokMSA_id:071565 AJ295677 Desulfovibrio vulgaris subsp. oxamicus strain ATCC1925T prokMSA_id:071502 AJ295678 Desulfovibrio sp. JG1 prokMSA_id:071137 AJ295679 Desulfovibrio sp. JG5 prokMSA_id:027402 AY059411 Desulfovibrio sp. R2 prokMSA_id:010500 X93147 Desulfovibrio sp. str. KH2. prokMSA_id:010499 Y12255 Desulfovibrio termitidis str. KSS1. prokMSA_id:010502 Z24450 Desulfovibrio longreachensis str. 16910a. 2.28.4.1.4.10.005 OTU 1 seq prokMSA_id:056351 AY075130 marine Vent 16 2.28.4.1.4.10.006 OTU 2 seqs prokMSA_id:059870 AB077458 sulfate-reducing clone:oil-3 prokMSA_id:059861 AB077467 sulfate-reducing clone:oil-14 2.28.4.1.4.10.007 OTU 1 seq prokMSA_id:059869 AB077459 sulfate-reducing clone:oil-5 2.28.4.1.4.10.008 OTU 1 seq prokMSA_id:078002 AB089108 delta clone:Rs-M72 2.28.4.1.4.10.009 OTU 1 seq prokMSA_id:078148 AB089105 delta clone:Rs-K75 2.28.4.1.4.10.010 OTU 1 seq prokMSA_id:090456 AJ567590 clone MBAE32 2.28.4.1.4.10.011 OTU 1 seq prokMSA_id:094910 AY371186 Delta K2-52 2.28.4.1.4.10.999 poor quality 24 seqs prokMSA_id:090332 AB097951 sulfate-reducing clone: Hydrogen21 prokMSA_id:090204 AB097952 sulfate-reducing clone: Hydrogen26 prokMSA_id:033202 AF096598 isolate BSR24 prokMSA_id:018198 AF194417 Desulfovibrio sp. PCP1 prokMSA_id:033847 AF441876 delta clone CD13B10 prokMSA_id:026658 AF441965 delta clone CD12A12 prokMSA_id:048782 AF441969 delta clone CD12A3 prokMSA_id:082370 AF510399 Desulfovibrio sp. AR1203/00 prokMSA_id:082170 AF510400 Desulfovibrio sp. AR1205/00 prokMSA_id:081813 AF510401 Desulfovibrio sp. AR1206/00 prokMSA_id:081965 AF510403 Desulfovibrio sp. LS1104/00 prokMSA_id:044970 AJ132934 Desulfovibrio sp. clone FSO4 prokMSA_id:028507 AJ289755 delta RS63 prokMSA_id:024688 AJ289756 delta RS64 prokMSA_id:070514 AJ318380 Desulfovibrio sp. D1 prokMSA_id:087388 AY261418 clone RFLP U97 prokMSA_id:092000 AY340860 isolate DGGE fragment SR_FBR_L4 prokMSA_id:010504 M34399 Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough DSM 644 prokMSA_id:010503 M80617 Desulfovibrio sp. prokMSA_id:010501 M98496 Desulfovibrio sp. str. PT-2. prokMSA_id:036875 U46517 oil field DVIB12 prokMSA_id:010509 U46531 clone DVIB148. prokMSA_id:028752 U81698 clone vadinBE06 prokMSA_id:010498 X87409 Desulfovibrio termitidis. 2.28.4.1.4.11 DSV.DESULFURICANS_SUBGROUP 68 seqs 2.28.4.1.4.11.001 OTU 10 seqs prokMSA_id:010516 AF098671 Desulfovibrio desulfuricans. prokMSA_id:046169 AF150723 Elbe River snow isolate SRB4neu prokMSA_id:045268 AF192153 Desulfovibrio desulfuricans subsp. desulfuricans strain Essex 6 complete prokMSA_id:048934 AF354664 Desulfovibrio desulfuricans prokMSA_id:022674 AF427913 clone 9E prokMSA_id:072418 AJ251631 Desulfovibrio sp. FD1 prokMSA_id:050393 AJ415573 Desulfovibrio desulfuricans strain 0104 959 prokMSA_id:081316 AY217428 MTCE-T2 12D prokMSA_id:010515 M34113 Desulfovibrio desulfuricans subsp. desulfuricans ATCC 27774. prokMSA_id:010526 X93146 Desulfovibrio sp. str. KRS1. 2.28.4.1.4.11.002 OTU 4 seqs prokMSA_id:093874 AB111106 Core-3 prokMSA_id:033199 AF192154 Desulfovibrio desulfuricans subsp. desulfuricans strain MB complete prokMSA_id:074474 AJ295680 Desulfovibrio intestinalis strain JG-G12 prokMSA_id:010519 Y12254 Desulfovibrio intestinalis str. KMS2. 2.28.4.1.4.11.003 OTU 1 seq prokMSA_id:010518 AF056091 Desulfovibrio UNSW3caefatS str. UNSW3caefatS. 2.28.4.1.4.11.004 OTU 1 seq prokMSA_id:010517 U82813 Bilophila wadsworthia str. RZATAU. 2.28.4.1.4.11.005 OTU 7 seqs prokMSA_id:010512 AF056088 Desulfovibrio ABHU1SB str. ABHU1SB. prokMSA_id:010513 AF056089 Desulfovibrio ABHU1SBfatS str. ABHU1SBfatS. prokMSA_id:010514 AF056090 Desulfovibrio ABHU2SB str. ABHU2SB. prokMSA_id:025583 AF192155 Desulfovibrio sp. D4 complete prokMSA_id:049692 AJ251630 Desulfovibrio sp. DSM12803 prokMSA_id:050667 AY005035 Desulfovibrio sp. oral clone BB161 prokMSA_id:010511 U42221 Desulfovibrio fairfieldensis. 2.28.4.1.4.11.006 OTU 1 seq prokMSA_id:010510 X93148 Desulfovibrio sp. str. KRS2. 2.28.4.1.4.11.007 OTU 1 seq prokMSA_id:023507 AB062810 clone:BCf11-19 2.28.4.1.4.11.008 OTU 1 seq prokMSA_id:026467 AF376401 ckncm168-F3M.1D4 2.28.4.1.4.11.009 OTU 1 seq prokMSA_id:030569 AF371871 clone p-2918-6C5 2.28.4.1.4.11.010 OTU 2 seqs prokMSA_id:051535 AF192152 Desulfomonas pigra complete prokMSA_id:052234 AF371870 clone p-223-o5 2.28.4.1.4.11.011 OTU 1 seq prokMSA_id:068469 AB081579 Desulfovibrio sp. A45 2.28.4.1.4.11.012 OTU 1 seq prokMSA_id:078006 AB089109 delta clone:Rs-M89 2.28.4.1.4.11.013 OTU 1 seq prokMSA_id:078153 AB089104 delta clone:Rs-N31 2.28.4.1.4.11.014 OTU 1 seq prokMSA_id:089809 AB113671 clone:AAB34 2.28.4.1.4.11.999 poor quality 35 seqs prokMSA_id:037963 AB062617 sulfate-reducing clone:DSV08 prokMSA_id:062090 AB064875 delta clone:NS1C11 prokMSA_id:086749 AB099792 clone: OLDA-A7 prokMSA_id:087933 AB099801 clone: OLDC-A4 prokMSA_id:087325 AB099802 clone: OLDC-H3 prokMSA_id:094418 AB120823 clone:MC82D12 prokMSA_id:022023 AF159534 SRB19 prokMSA_id:048124 AF159535 SRB3 prokMSA_id:041276 AF159536 SRB7 prokMSA_id:068208 AF365516 clone BM89MF5BE12 prokMSA_id:044272 AF376408 ckncm175-F3M.1E7 prokMSA_id:035365 AF427916 clone 3F prokMSA_id:051104 AF427919 clone 11D prokMSA_id:025943 AF427925 clone 5B prokMSA_id:042992 AF427956 clone 6E prokMSA_id:070149 AJ132935 Desulfovibrio sp. clone FSRO2 prokMSA_id:022362 AJ308394 clone S26-5 prokMSA_id:035767 AJ318100 Desulfomonas oviles isolate Isolate B1 prokMSA_id:020193 AJ418964 clone k041 prokMSA_id:038870 AJ419036 clone kl082 prokMSA_id:069259 AY006872 rumen prokMSA_id:059307 AY122354 Desulfovibrio sp. clone III-17 prokMSA_id:081605 AY217443 BTCE-T2 12C prokMSA_id:085519 AY256593 DGGE band S2-11 prokMSA_id:092992 AY343238 clone REC6M_20 prokMSA_id:010528 D63616 clone UN40. prokMSA_id:010521 D63622 clone UN50. prokMSA_id:010522 D63624 clone UN59. prokMSA_id:010527 D63625 clone UN6. prokMSA_id:010524 D63640 clone UN93. prokMSA_id:010523 M34404 Desulfomonas pigra ATCC 29098 . prokMSA_id:010525 M37313 Desulfovibrio desulfuricans subsp. desulfuricans str. Essex 6 M.E. prokMSA_id:010520 U46528 clone DVIB116. prokMSA_id:018023 U60095 Desulfovibrio IC1 prokMSA_id:021343 Y12253 Desulfovibrio intestinalis strain KOS1 2.28.4.2 BDE.STOLPII_GROUP 200 seqs 2.28.4.2.1 BDE.STOLPII_SUBGROUP 52 seqs 2.28.4.2.1.001 OTU 1 seq prokMSA_id:010535 AJ240999 clone Sva0447. 2.28.4.2.1.002 OTU 6 seqs prokMSA_id:025914 AF084856 Bdellovibrio sp. JS2 prokMSA_id:023141 AF084858 Bdellovibrio sp. JS4 prokMSA_id:028791 AF084860 Bdellovibrio sp. JS6 prokMSA_id:038867 AF084861 Bdellovibrio sp. JS7 prokMSA_id:019894 AF084862 Bdellovibrio sp. JS7 prokMSA_id:022841 AF084863 Bdellovibrio sp. JS10 2.28.4.2.1.003 OTU 2 seqs prokMSA_id:020787 AJ290002 FukuN97 prokMSA_id:040173 AJ290009 FukuN9 2.28.4.2.1.004 OTU 3 seqs prokMSA_id:022594 AJ278146 Bdellovibrio sp. SD1 prokMSA_id:049685 AJ288899 Bdellovibrio stolpii strain DSM 12778 prokMSA_id:067145 AY094131 stolpii 2.28.4.2.1.005 OTU 1 seq prokMSA_id:030646 AF211266 delta CE98 2.28.4.2.1.006 OTU 1 seq prokMSA_id:030942 AF195483 delta kpc124rc 2.28.4.2.1.007 OTU 9 seqs prokMSA_id:031879 AF084857 Bdellovibrio sp. JS3 prokMSA_id:038577 AF084859 Bdellovibrio sp. JS5 prokMSA_id:067165 AY094108 Bdellovibiro sp. Annapolis prokMSA_id:067161 AY094111 Bdellovibrio sp. Cancun2 prokMSA_id:055598 AY094112 Bdellovibrio sp. Cancun6 prokMSA_id:067163 AY094113 Bdellovibrio sp. Cancun7 prokMSA_id:067156 AY094119 Bdellovibrio sp. OC2 prokMSA_id:067154 AY094120 Bdellovibrio sp. OC4 prokMSA_id:067143 AY094128 Bdellovibrio sp. JS5 2.28.4.2.1.008 OTU 1 seq prokMSA_id:033331 AB054175 delta HOC41 2.28.4.2.1.009 OTU 1 seq prokMSA_id:035117 AF195484 delta kpj326rc 2.28.4.2.1.010 OTU 1 seq prokMSA_id:038634 AF084853 Bdellovibrio sp. Gunpowder 2.28.4.2.1.011 OTU 1 seq prokMSA_id:055495 AY094130 Bdellovibrio sp. SJ 2.28.4.2.1.012 OTU 1 seq prokMSA_id:067158 AY094117 Bdellovibrio sp. MIL1 2.28.4.2.1.013 OTU 1 seq prokMSA_id:074554 AF084852 Bdellovibrio starrii 2.28.4.2.1.014 OTU 1 seq prokMSA_id:075942 AJ518802 delta clone JG37-AG-139 2.28.4.2.1.015 OTU 1 seq prokMSA_id:077757 AY171374 clone s33 2.28.4.2.1.999 poor quality 21 seqs prokMSA_id:082733 AB096616 clone: SUIYO-E2 prokMSA_id:010533 AF030776 clone Adriatic33. prokMSA_id:010534 AF030781 clone Adriatic91. prokMSA_id:025730 AF141454 clone CRE-FL28 prokMSA_id:024972 AF211265 delta CE46 prokMSA_id:036975 AF231441 Humic substances enrichment clone D25 prokMSA_id:068101 AF365637 clone BM89DS1BbB4 prokMSA_id:024803 AF392700 clone LEF10 prokMSA_id:076024 AF431402 delta clone S52.31PG prokMSA_id:045236 AF441975 delta clone CD12G9 prokMSA_id:048358 AF473947 delta 140-2-5 prokMSA_id:051005 AJ231061 delta clone 16 prokMSA_id:062582 AJ504539 isolate P1CN84 prokMSA_id:078254 AY171387 clone s87 prokMSA_id:088911 AY323173 clone A115-31 prokMSA_id:090290 AY323174 clone A115-24 prokMSA_id:010532 M34125 Bdellovibrio stolpii str. UKi2 ATCC 27052 . prokMSA_id:010531 M61231 Bdellovibrio starrii ATCC 15145 . prokMSA_id:010530 M61239 Bdellovibrio stolpii str. UKi2 ATCC 27052 . prokMSA_id:010529 M61240 Bdellovibrio sp. str. BM-4. prokMSA_id:042194 Z88585 isolate HRV8 2.28.4.2.2 ENVIRONMENTAL_CLONE_VADIN_BA07_SUBGROUP 68 seqs 2.28.4.2.2.001 OTU 1 seq prokMSA_id:010545 X97103 clone TM10. 2.28.4.2.2.002 OTU 1 seq prokMSA_id:010544 X97102 clone TM21. 2.28.4.2.2.003 OTU 1 seq prokMSA_id:010543 X97099 clone TM6. 2.28.4.2.2.004 OTU 1 seq prokMSA_id:010541 AF146248 clone CLEAR-25. 2.28.4.2.2.005 OTU 1 seq prokMSA_id:010540 AF142793 clone ACE-15. 2.28.4.2.2.006 OTU 1 seq prokMSA_id:010539 AF142811 clone ACE-36. 2.28.4.2.2.007 OTU 4 seqs prokMSA_id:010538 AJ009448 clone SJA-4. prokMSA_id:050582 AJ387898 C1-3 clone C1-3 prokMSA_id:082807 AY261809 clone PD-UASB-12 prokMSA_id:010536 U81641 clone vadinBA07. 2.28.4.2.2.008 OTU 1 seq prokMSA_id:010537 AF159638 clone HstpL37. 2.28.4.2.2.009 OTU 1 seq prokMSA_id:019035 AF289152 clone PRD01a004B 2.28.4.2.2.010 OTU 2 seqs prokMSA_id:033441 AF255637 clone Ebpr6 prokMSA_id:029910 AF255643 clone Ebpr8 2.28.4.2.2.011 OTU 1 seq prokMSA_id:030823 AF422661 clone d076 2.28.4.2.2.012 OTU 1 seq prokMSA_id:032172 AF268992 SBRH58 2.28.4.2.2.013 OTU 1 seq prokMSA_id:033719 AF424302 MERTZ_2CM_115 2.28.4.2.2.014 OTU 1 seq prokMSA_id:050438 AF424254 MERTZ_21CM_276 2.28.4.2.2.015 OTU 1 seq prokMSA_id:061296 AY043961 division TM6 clone NMS8.130WL 2.28.4.2.2.016 OTU 1 seq prokMSA_id:061307 AY043958 division TM6 clone NMW3.210WL 2.28.4.2.2.017 OTU 1 seq prokMSA_id:061498 AY043739 division TM6 clone NOS7.2WL 2.28.4.2.2.018 OTU 1 seq prokMSA_id:065674 AF507715 soil clone S1204 2.28.4.2.2.019 OTU 1 seq prokMSA_id:065675 AF507714 soil clone S1198 2.28.4.2.2.020 OTU 1 seq prokMSA_id:077113 AY159149 MF_clone_127 2.28.4.2.2.021 OTU 1 seq prokMSA_id:093457 AY360509 clone BSB4-217m 2.28.4.2.2.999 poor quality 43 seqs prokMSA_id:019659 AF016514 HRS-1 prokMSA_id:020329 AF016515 HRS-2 prokMSA_id:034910 AF141560 clone CRO-6 prokMSA_id:026166 AF287044 delta EC-I5 prokMSA_id:040614 AF296217 SY6-93 prokMSA_id:049579 AF332307 clone T26-14 prokMSA_id:037163 AF337878 gold mine D21 prokMSA_id:022732 AF392678 clone P2D6 prokMSA_id:026080 AF392680 clone SCB10 prokMSA_id:034328 AF392682 clone CRD2 prokMSA_id:024825 AF392683 clone CRC4 prokMSA_id:040214 AF392687 clone CBB6 prokMSA_id:043722 AF392688 clone CBA5 prokMSA_id:027813 AF392689 clone CDE9 prokMSA_id:016912 AF392691 clone CDD6 prokMSA_id:019822 AF392695 clone LAA4 prokMSA_id:048182 AF392696 clone LAH4 prokMSA_id:052049 AF392697 clone LAC5 prokMSA_id:030397 AF392698 clone LBC6 prokMSA_id:050688 AF403190 clone cvf122287 prokMSA_id:046571 AF428659 clone CRP99-05 prokMSA_id:051894 AF428964 clone CR99-35-06 prokMSA_id:077035 AF431607 division TM6 clone C16.46WL prokMSA_id:076856 AF431608 division TM6 clone S37.32SM prokMSA_id:076038 AF431609 division TM6 clone S51.55PG prokMSA_id:077121 AF431610 division TM6 clone S52.02PG prokMSA_id:075838 AF432760 clone N41.107PG prokMSA_id:075814 AF432761 clone N41.112PG prokMSA_id:071935 AF523326 clone P4-40 prokMSA_id:033936 AJ301576 GR-371.III.79 prokMSA_id:057192 AJ518319 clone Neu2P1-41 prokMSA_id:056950 AJ518634 clone Sai1P1-62 prokMSA_id:061487 AY043738 division TM6 clone NOW2.127WL prokMSA_id:061300 AY043957 division TM6 clone NMW3.131WL prokMSA_id:061297 AY043959 division TM6 clone NMW3.8WL prokMSA_id:061298 AY043960 division TM6 clone NMW3.88WL prokMSA_id:061295 AY043962 division TM6 clone NMS8.16WL prokMSA_id:061294 AY043963 division TM6 clone NMS8.76WL prokMSA_id:084458 AY251222 delta clone 7A_3 prokMSA_id:086515 AY251224 delta clone 7A_6 prokMSA_id:086456 AY251226 delta clone 7A_8 prokMSA_id:084376 AY251227 delta clone 7A_9 prokMSA_id:010542 X97106 str. TM84. 2.28.4.2.3 ENVIRONMENTAL_CLONE_WCHA2-26_SUBGROUP 7 seqs 2.28.4.2.3.001 OTU 1 seq prokMSA_id:010549 AF050609 clone WCHA2-26. 2.28.4.2.3.002 OTU 1 seq prokMSA_id:010548 U86457 clone pN1-3. 2.28.4.2.3.003 OTU 1 seq prokMSA_id:010546 L11956 Pacific Ocean station 16 100m depth clone 2.28.4.2.3.004 OTU 1 seq prokMSA_id:079887 AY193170 candidate division SR1 clone SRB7 2.28.4.2.3.005 OTU 2 seqs prokMSA_id:080557 AY193174 candidate division SR1 clone SRB1 prokMSA_id:080933 AY193201 candidate division SR1 clone SRB52 2.28.4.2.3.999 poor quality 1 seq prokMSA_id:010547 L11952 Pacific Ocean station 16 100m depth clone 2.28.4.2.4 ENVIRONMENTAL_CLONE_OPS136_SUBGROUP 7 seqs 2.28.4.2.4.001 OTU 1 seq prokMSA_id:010552 AF027027 clone OPS136. 2.28.4.2.4.002 OTU 1 seq prokMSA_id:010550 AF050608 clone WCHA1-16. 2.28.4.2.4.003 OTU 1 seq prokMSA_id:063204 AF524023 clone FW128 2.28.4.2.4.999 poor quality 4 seqs prokMSA_id:059443 AF540819 clone DP10u16 prokMSA_id:059442 AF540820 clone DP10u35 prokMSA_id:083116 AY197419 clone B04R021 prokMSA_id:010551 X91480 AEspoe hard rock 10-626m below ground surface clone A57n. 2.28.4.2.5 ENVIRONMENTAL_CLONE_WCHB1-56_SUBGROUP 33 seqs 2.28.4.2.5.001 OTU 1 seq prokMSA_id:010559 U86604 clone P36b. 2.28.4.2.5.002 OTU 1 seq prokMSA_id:010558 AF050605 clone WCHB1-56. 2.28.4.2.5.003 OTU 1 seq prokMSA_id:010556 AF050604 clone WCHA1-09. 2.28.4.2.5.004 OTU 1 seq prokMSA_id:010555 AF050603 clone WCHB1-11. 2.28.4.2.5.005 OTU 1 seq prokMSA_id:010554 AF047573 clone LGd14. 2.28.4.2.5.006 OTU 1 seq prokMSA_id:010553 AF047572 clone LGd17. 2.28.4.2.5.007 OTU 2 seqs prokMSA_id:039541 AF422585 clone t010 prokMSA_id:028453 AF422607 clone t037 2.28.4.2.5.008 OTU 1 seq prokMSA_id:030636 AF289157 clone PRD01a009B 2.28.4.2.5.009 OTU 1 seq prokMSA_id:042759 AF422659 clone d073 2.28.4.2.5.010 OTU 1 seq prokMSA_id:063928 AF424446 candidate division OP11 MERTZ_21CM_55 2.28.4.2.5.011 OTU 1 seq prokMSA_id:065312 AF422618 clone t048 2.28.4.2.5.012 OTU 1 seq prokMSA_id:071714 AF523931 clone RCP1-27 2.28.4.2.5.013 OTU 1 seq prokMSA_id:072975 AF524028 clone FW61 2.28.4.2.5.014 OTU 2 seqs prokMSA_id:079984 AY193285 candidate division OP11 clone WSA1 prokMSA_id:079637 AY193286 candidate division OP11 clone WSA68 2.28.4.2.5.015 OTU 1 seq prokMSA_id:079720 AY193188 candidate division OP11 clone DA26 2.28.4.2.5.016 OTU 1 seq prokMSA_id:080041 AY193294 candidate division OP11 clone SRD12 2.28.4.2.5.017 OTU 1 seq prokMSA_id:080131 AY193198 candidate division OP11 clone SRD1 2.28.4.2.5.018 OTU 1 seq prokMSA_id:080435 AY193134 candidate division OP11 clone Bol76 2.28.4.2.5.019 OTU 1 seq prokMSA_id:080704 AY193296 candidate division OP11 clone SRD37 2.28.4.2.5.020 OTU 1 seq prokMSA_id:093281 AJ582211 clone Gitt-GS-67 2.28.4.2.5.999 poor quality 11 seqs prokMSA_id:065315 AF422582 clone t007 prokMSA_id:025071 AF422597 clone t023 prokMSA_id:033597 AF422600 clone t026 prokMSA_id:047510 AF429174 clone CR99-24-64 prokMSA_id:059438 AF540824 clone DP10u18 prokMSA_id:080987 AY193003 candidate division OP11 clone DB2 prokMSA_id:080789 AY193026 candidate division OP11 clone WSA5 prokMSA_id:080931 AY193027 candidate division OP11 clone WSA8 prokMSA_id:080792 AY193028 candidate division OP11 clone WSA81 prokMSA_id:080078 AY193029 candidate division OP11 clone WSA86 prokMSA_id:010557 U68664 clone P36. 2.28.4.2.6 ENVIRONMENTAL_CLONE_WCHB1-07_SUBGROUP 28 seqs 2.28.4.2.6.001 OTU 1 seq prokMSA_id:010567 AF050599 clone WCHB1-26. 2.28.4.2.6.002 OTU 1 seq prokMSA_id:010565 AF050602 clone WCHA1-24. 2.28.4.2.6.003 OTU 1 seq prokMSA_id:010564 AF050601 clone WCHA1-20. 2.28.4.2.6.004 OTU 1 seq prokMSA_id:010560 AF050606 clone WCHB1-64. 2.28.4.2.6.005 OTU 1 seq prokMSA_id:018743 AF423182 Toluene-degrading methanogenic consortium Eub 2 2.28.4.2.6.006 OTU 1 seq prokMSA_id:041471 AF276448 clone RFLP 8E 2.28.4.2.6.007 OTU 1 seq prokMSA_id:042849 AF422676 clone d153 2.28.4.2.6.008 OTU 1 seq prokMSA_id:069764 AF419694 C1_B032 2.28.4.2.6.009 OTU 1 seq prokMSA_id:070097 AF389434 clone SRS62DBA50 2.28.4.2.6.010 OTU 1 seq prokMSA_id:080684 AY188303 clone KD3-145 2.28.4.2.6.011 OTU 2 seqs prokMSA_id:081179 AY218552 clone KD1-128 prokMSA_id:082149 AY218586 clone KD2-5 2.28.4.2.6.012 OTU 1 seq prokMSA_id:081929 AY218572 clone KD2-13 2.28.4.2.6.013 OTU 1 seq prokMSA_id:082092 AY218580 clone KD2-26 2.28.4.2.6.014 OTU 1 seq prokMSA_id:082162 AY218563 clone KD1-59 2.28.4.2.6.015 OTU 1 seq prokMSA_id:094917 AY371185 clone K2-4-19 2.28.4.2.6.999 poor quality 12 seqs prokMSA_id:010566 AF050600 clone WCHB1-07. prokMSA_id:044652 AF146265 SCALE-13 prokMSA_id:027261 AF316765 Crater Lake CL120-15 prokMSA_id:026196 AF316770 Crater Lake CL500-37 prokMSA_id:023798 AF316771 Crater Lake CL500-54 prokMSA_id:034375 AF316772 Crater Lake CL500-102 prokMSA_id:057005 AJ518554 clone Qui4P1-82 prokMSA_id:065580 AY095378 yard-trimming-compost clone S-4 prokMSA_id:027379 Z77419 1-420 C53 prokMSA_id:010561 Z77452 str. 1-700 C27. prokMSA_id:010562 Z77458 str. 1-700 C36. prokMSA_id:010563 Z77481 str. 2-100 C1.18. 2.28.4.2.7 ENVIRONMENTAL_CLONE_WCHA1-11_SUBGROUP 5 seqs 2.28.4.2.7.001 OTU 1 seq prokMSA_id:010568 AF050607 clone WCHA1-11. 2.28.4.2.7.002 OTU 1 seq prokMSA_id:036032 AF424445 candidate division OP11 MERTZ_21CM_52 2.28.4.2.7.003 OTU 1 seq prokMSA_id:040981 AF224845 clone Car116rc 2.28.4.2.7.004 OTU 1 seq prokMSA_id:066914 AJ306790 clone SHA-59 2.28.4.2.7.999 poor quality 1 seq prokMSA_id:010569 D26218 soil from paddy field clone PAD31. 2.28.4.3 DSR.ACETIVORANS_GROUP 11 seqs 2.28.4.3.001 OTU 5 seqs prokMSA_id:047020 AF232926 delta MS10 prokMSA_id:010570 X72768 Desulfurella acetivorans DSM 5264. prokMSA_id:010573 Y16941 Desulfurella kamchatkensis str. K-119 DSM 10409 . prokMSA_id:010572 Y16942 Desulfurella propionica str. U-8 DSM 10410 . prokMSA_id:010571 Y16943 Desulfurella multipotens str. RH-8 DSM 8415 . 2.28.4.3.002 OTU 1 seq prokMSA_id:033655 AF402982 Desulfurella sp. clone 2.28.4.3.003 OTU 1 seq prokMSA_id:045576 AF325180 clone B45 2.28.4.3.004 OTU 1 seq prokMSA_id:051780 Y18292 Hippea maritima 2.28.4.3.005 OTU 1 seq prokMSA_id:091322 AY340838 clone SR_FBR_L35 2.28.4.3.999 poor quality 2 seqs prokMSA_id:089629 AY305279 clone BND2 prokMSA_id:091876 AY340861 isolate DGGE fragment SR_FBR_L5 2.28.4.4 ENVIRONMENTAL_CLONE_FIE17 1 seq 2.28.4.4.999 poor quality 1 seq prokMSA_id:010574 D26267 soil from soybean field clone FIE17. 2.28.4.5 ENVIRONMENTAL_CLONE_A33_GROUP 4 seqs 2.28.4.5.999 poor quality 4 seqs prokMSA_id:010578 U08385 clone A1. prokMSA_id:010577 U08387 clone A30. prokMSA_id:010575 U08388 clone A33. prokMSA_id:010576 U08391 clone A36. 2.28.4.6 MYXOBACTERIA 319 seqs 2.28.4.6.1 MYX.XANTHUS_SUBGROUP 143 seqs 2.28.4.6.1.001 OTU 18 seqs prokMSA_id:066415 AF506735 Cystobacter sp. BD54 prokMSA_id:066413 AF506737 Cystobacter sp. SHX9 prokMSA_id:010617 AJ233897 Cystobacter fuscus str. Cb f6. prokMSA_id:010618 AJ233898 Cystobacter fuscus str. Cb f10. prokMSA_id:010619 AJ233899 Cystobacter fuscus str. Cb f39. prokMSA_id:010630 AJ233900 Cystobacter ferrugineus str. Cb fe13. prokMSA_id:010620 AJ233901 Cystobacter ferrugineus str. Cb fe18. prokMSA_id:010621 AJ233902 Cystobacter ferrugineus str. Cb fe27. prokMSA_id:010631 AJ233903 Cystobacter minus str. Cb m2. prokMSA_id:010632 AJ233904 Cystobacter minus str. Cb m6. prokMSA_id:010633 AJ233905 Cystobacter violaceus str. Cb vi29. prokMSA_id:010634 AJ233906 Cystobacter violaceus str. Cb vi34. prokMSA_id:010622 AJ233907 Melittangium alboraceum str. Me b7. prokMSA_id:010623 AJ233908 Melittangium boletus str. Me b8. prokMSA_id:010626 AJ233910 Cystobacter disciformis str. An d4. prokMSA_id:010627 AJ233911 Cystobacter disciformis str. An d6. prokMSA_id:010628 AJ233912 Archangium gephyra str. Ar g1. prokMSA_id:010629 AJ233913 Archangium gephyra str. Ar g2. 2.28.4.6.1.003 OTU 1 seq prokMSA_id:010599 U68672 clone P45. 2.28.4.6.1.004 OTU 1 seq prokMSA_id:010597 AF027079 clone OPS152. 2.28.4.6.1.005 OTU 1 seq prokMSA_id:010596 AJ009449 clone SJA-5. 2.28.4.6.1.006 OTU 2 seqs prokMSA_id:010586 AJ233949 str. NOCB-2. prokMSA_id:010587 AJ233950 str. NOCB-4. 2.28.4.6.1.009 OTU 7 seqs prokMSA_id:066809 AF499616 Stigmatella aurantiaca isolate CBB17A prokMSA_id:010581 AJ233933 Stigmatella erecta str. Pd e3. prokMSA_id:010585 AJ233934 Stigmatella erecta str. Pd e19. prokMSA_id:010582 AJ233935 Stigmatella aurantiaca str. Sg a1. prokMSA_id:010583 AJ233936 Stigmatella aurantiaca str. Sg a15. prokMSA_id:010584 AJ233937 Stigmatella aurantiaca str. Sg a28. prokMSA_id:010580 M94281 Stigmatella aurantiaca ATCC 25190 . 2.28.4.6.1.010 OTU 1 seq prokMSA_id:021534 AF414588 clone P3OB-42 2.28.4.6.1.011 OTU 6 seqs prokMSA_id:047993 AF382396 Anaeromyxobacter dehalogenans strain 2CP-1 prokMSA_id:024157 AF382397 Anaeromyxobacter dehalogenans strain 2CP-5 prokMSA_id:027824 AF382398 Anaeromyxobacter dehalogenans strain 2CP-2 prokMSA_id:045051 AF382399 Anaeromyxobacter dehalogenans strain 2CP-C prokMSA_id:031177 AF382400 Anaeromyxobacter dehalogenans strain 2CP-3 prokMSA_id:086450 AJ504438 Anaeromyxobacter sp. FAc12 strain FAc12 2.28.4.6.1.012 OTU 1 seq prokMSA_id:045379 AF293009 Green Bay ferromanganous micronodule MNF2 2.28.4.6.1.013 OTU 1 seq prokMSA_id:063253 AF523970 clone FW35 2.28.4.6.1.014 OTU 1 seq prokMSA_id:065455 AY102330 clone a13134 2.28.4.6.1.015 OTU 1 seq prokMSA_id:066526 AY100555 clone cvf63054 2.28.4.6.1.017 OTU 48 seqs prokMSA_id:047762 AF336801 Myxococcus fulvus prokMSA_id:034703 AF466191 Myxococcus fulvus strain 125-1 complete prokMSA_id:055248 AF499618 Myxococcus stipitatus isolate CBS11A RD prokMSA_id:066806 AF499619 Corallococcus exiguus isolate CBS12B prokMSA_id:066805 AF499621 Myxococcus stipitatus isolate CBS14B RD prokMSA_id:066804 AF499622 Corallococcus exiguus isolate CBS17A prokMSA_id:066803 AF499623 Corallococcus exiguus isolate CBS17C prokMSA_id:066801 AF499625 Corallococcus exiguus isolate CBS19B prokMSA_id:066800 AF499626 Corallococcus exiguus isolate CBS1C prokMSA_id:066799 AF499627 Myxococcus stipitatus isolate CBS2B RD prokMSA_id:066798 AF499628 Corallococcus exiguus isolate OHS12A prokMSA_id:056347 AF499630 Myxococcus xanthus isolate OHS3A prokMSA_id:066796 AF499631 Corallococcus exiguus isolate OHS5A prokMSA_id:066794 AF499632 Corallococcus exiguus isolate OHS5B prokMSA_id:066795 AF499633 Corallococcus exiguus isolate OHS5C prokMSA_id:056309 AF503456 Myxococcus fulvus strain LS2006 prokMSA_id:066582 AF503457 Myxococcus stipitatus strain ATCC 29611 prokMSA_id:074524 AF503458 Myxococcus macrosporus strain ATCC 29619 prokMSA_id:066581 AF503459 Myxococcus virescens strain ATCC 25203 prokMSA_id:066580 AF503460 Myxococcus xanthus strain DK1622 prokMSA_id:066414 AF506736 Myxococcus xanthus prokMSA_id:066412 AF506738 Myxococcus stipitatus prokMSA_id:010600 AJ233909 Cystobacter disciformis str. An d1. prokMSA_id:010591 AJ233914 Myxococcus coralloides str. Cc c494. prokMSA_id:010592 AJ233915 Myxococcus coralloides str. Cc c806. prokMSA_id:010601 AJ233916 Myxococcus flavescens str. Mx fl1. prokMSA_id:010602 AJ233917 Myxococcus fulvus str. Mx f2. prokMSA_id:010603 AJ233918 Myxococcus fulvus str. Mx f421. prokMSA_id:010604 AJ233919 Myxococcus fulvus str. Mx f428. prokMSA_id:010605 AJ233920 Myxococcus macrosporus str. Cc m7. prokMSA_id:010606 AJ233921 Myxococcus macrosporus str. Cc m8. prokMSA_id:010607 AJ233922 Myxococcus stipitatus str. Mx s33. prokMSA_id:010608 AJ233923 Myxococcus stipitatus str. Mx s42. prokMSA_id:010609 AJ233924 Myxococcus stipitatus str. Mx s52. prokMSA_id:010610 AJ233925 Myxococcus virescens str. Mx v2. prokMSA_id:010611 AJ233926 Myxococcus virescens str. Mx v76. prokMSA_id:010612 AJ233927 Myxococcus virescens str. Mx v1. prokMSA_id:010613 AJ233928 Myxococcus virescens str. Mx v144. prokMSA_id:010614 AJ233929 Myxococcus xanthus str. Mx x1 DSM 435. prokMSA_id:010615 AJ233930 Myxococcus xanthus str. Mx x132. prokMSA_id:010589 AJ233931 Corallococcus exiguus str. Cc e12b. prokMSA_id:010590 AJ233932 Corallococcus exiguus str. Cc e100. prokMSA_id:020918 AY032879 Myxococcus fulvus 128-7 complete prokMSA_id:017656 AY072737 Myxococcus macrosporus strain 125-10-3 complete prokMSA_id:035329 AY072738 Myxococcus macrosporus strain 125-10-2 complete prokMSA_id:021423 AY072739 Corallococcus coralloides strain Cc9736 complete prokMSA_id:021317 AY072740 Myxococcus macrosporus strain 125-10-1 complete prokMSA_id:010594 M34114 Myxococcus xanthus str. DK1622. 2.28.4.6.1.018 OTU 1 seq prokMSA_id:066807 AF499620 Stigmatella erecta isolate CBS14A RD 2.28.4.6.1.019 OTU 1 seq prokMSA_id:066954 AF482687 Myxobacterium KC 2.28.4.6.1.020 OTU 1 seq prokMSA_id:067270 AF495418 clone F13.10 2.28.4.6.1.021 OTU 2 seqs prokMSA_id:076443 AJ518794 delta clone JG37-AG-82 prokMSA_id:075334 AJ518797 delta clone JG37-AG-106 2.28.4.6.1.022 OTU 1 seq prokMSA_id:076335 AY154616 earthworm cast clone c264 2.28.4.6.1.023 OTU 1 seq prokMSA_id:081274 AY192054 gamma clone P67-GM4R-t 2.28.4.6.1.024 OTU 1 seq prokMSA_id:082334 AY218599 clone KD3-10 2.28.4.6.1.027 OTU 9 seqs prokMSA_id:082595 AJ504428 cf. Anaeromyxobacter sp. clone 45D-51 prokMSA_id:085991 AJ504429 cf. Anaeromyxobacter sp. clone 45D-76 prokMSA_id:085245 AJ504430 cf. Anaeromyxobacter sp. clone 45D-26 prokMSA_id:083142 AJ504431 cf. Anaeromyxobacter sp. clone 45D-27 prokMSA_id:083217 AJ504432 cf. Anaeromyxobacter sp. clone 90D-12 prokMSA_id:083775 AJ504433 cf. Anaeromyxobacter sp. clone 90D-18 prokMSA_id:082538 AJ504434 cf. Anaeromyxobacter sp. clone 90D-25 prokMSA_id:083783 AJ504435 cf. Anaeromyxobacter sp. clone 90D-47 prokMSA_id:086437 AJ504436 cf. Anaeromyxobacter sp. clone 90D-55 2.28.4.6.1.028 OTU 1 seq prokMSA_id:082878 AY217484 delta clone WCB148 2.28.4.6.1.029 OTU 1 seq prokMSA_id:084601 AY221038 clone CCD7 2.28.4.6.1.999 poor quality 35 seqs prokMSA_id:033208 AF289917 alpha Kmlps6-25 prokMSA_id:053254 AF392675 clone TCC10 prokMSA_id:061229 AF432675 clone NMS8.51WL prokMSA_id:056256 AF499335 clone JCL4-56 prokMSA_id:067117 AF499337 clone JCL4-100 prokMSA_id:067097 AF499362 clone JCL9-26 prokMSA_id:067085 AF499374 clone JCL1-4 prokMSA_id:067083 AF499381 clone JCL1-27 prokMSA_id:067069 AF499395 clone JCL1-39 prokMSA_id:066808 AF499617 Melittangium lichenicola isolate CBB3A prokMSA_id:066802 AF499624 Corallococcus exiguus isolate CBS19A prokMSA_id:066797 AF499629 Myxococcus stipitatus isolate OHS13A RD prokMSA_id:076491 AF538338 isolate ENV-MO-006 prokMSA_id:050272 AJ296621 GR-296.II.10 clone GR-296.II.10 prokMSA_id:072994 AJ319838 SB-53-TW prokMSA_id:061689 AJ416257 clone Sta5-09 prokMSA_id:026048 AJ431305 clone 1_51 prokMSA_id:057209 AJ518297 clone Mul2P3-74 prokMSA_id:073123 AJ518314 clone Neu2P1-15 prokMSA_id:057138 AJ518395 clone Neu4P1-84 prokMSA_id:069252 AY146669 Delta K18 prokMSA_id:080176 AY192299 delta clone W1-4A prokMSA_id:081015 AY192300 delta clone W2b-3A prokMSA_id:084605 AY214732 delta clone BB-1-H9 prokMSA_id:084968 AY221077 clone CCU2 prokMSA_id:095252 AY395087 clone A03R prokMSA_id:096345 AY395178 clone H11K prokMSA_id:010579 D26190 soil from paddy field clone PAD3. prokMSA_id:010625 M94273 Archangium gephyra ATCC 25201 . prokMSA_id:010616 M94276 Cystobacter fuscus ATCC 25194 . prokMSA_id:010588 M94277 Melittangium lichenicola ATCC 25946. prokMSA_id:010593 M94278 Myxococcus coralloides str. M2 ATCC 25202 . prokMSA_id:010624 M94374 Angiococcus disciformis ATCC 33172 . prokMSA_id:010598 U68621 clone M36. prokMSA_id:010595 U68656 clone P23. 2.28.4.6.2 ENVIRONMENTAL_CLONE_PAD34 1 seq 2.28.4.6.2.999 poor quality 1 seq prokMSA_id:010635 D26221 soil from paddy field clone PAD34. 2.28.4.6.3 POL.CELLULOSUM_SUBGROUP 175 seqs 2.28.4.6.3.001 OTU 1 seq prokMSA_id:010657 AJ233948 str. NOSO-1. 2.28.4.6.3.002 OTU 1 seq prokMSA_id:010654 AB016470 str. SMP-2. 2.28.4.6.3.003 OTU 2 seqs prokMSA_id:010653 AB016469 str. SHI-1. prokMSA_id:066994 AB083432 Plesiocystis pacifica 2.28.4.6.3.004 OTU 1 seq prokMSA_id:010652 AJ233944 Polyangium vitellinum str. Pl vt1. 2.28.4.6.3.005 OTU 3 seqs prokMSA_id:073759 AB084253 Nannocystis exedens prokMSA_id:010649 AJ233945 Nannocystis aggregans str. Na a1. prokMSA_id:010651 AJ233947 Nannocystis exedens str. Na e571. 2.28.4.6.3.006 OTU 1 seq prokMSA_id:010650 AJ233946 Nannocystis exedens str. Na e1. 2.28.4.6.3.007 OTU 1 seq prokMSA_id:010646 U15117 Pele's Vents clone PVB_46. 2.28.4.6.3.008 OTU 1 seq prokMSA_id:010645 AJ233943 Polyangium thaxteri str. Pl t3. 2.28.4.6.3.009 OTU 4 seqs prokMSA_id:010639 AJ233938 Chondromyces apiculatus str. Cm a14. prokMSA_id:010640 AJ233939 Chondromyces lanuginosus str. Sy t2. prokMSA_id:010642 AJ233941 Chondromyces robustus str. Cm a22. prokMSA_id:010643 AJ233942 Chondromyces robustus str. Cm a13. 2.28.4.6.3.010 OTU 1 seq prokMSA_id:010641 AJ233940 Chondromyces pediculatus str. Cm p17. 2.28.4.6.3.011 OTU 13 seqs prokMSA_id:039056 AF387628 Polyangium cellulosum strain 87-5 complete prokMSA_id:033812 AF387629 Polyangium cellulosum strain So ce26 complete prokMSA_id:046866 AF467672 Polyangium cellulosum strain So9881 complete prokMSA_id:041480 AF467673 Polyangium cellulosum strain So9882-1 complete prokMSA_id:022473 AF467674 Polyangium cellulosum strain So9857 complete prokMSA_id:047189 AF467675 Polyangium cellulosum strain So9735-22 complete prokMSA_id:024751 AJ316014 Polyangium cellulosum strain So ce56 prokMSA_id:072161 AJ316015 Polyangium cellulosum strain So ce90 prokMSA_id:045207 AY032880 Polyangium cellulosum So9721-1 complete prokMSA_id:017113 AY039304 Polyangium cellulosum complete prokMSA_id:029731 AY079453 Polyangium cellulosum strain So0089-1 complete prokMSA_id:086196 AY252113 Polyangium cellulosum strain So9734 complete prokMSA_id:082906 AY252114 Polyangium cellulosum strain So02007-3 complete 2.28.4.6.3.012 OTU 1 seq prokMSA_id:020200 AJ296570 GR-WP33-58 clone GR-WP33-58 2.28.4.6.3.013 OTU 1 seq prokMSA_id:020217 AY037631 soil clone S119 2.28.4.6.3.014 OTU 1 seq prokMSA_id:020395 AY050607 clone RA13C9 2.28.4.6.3.015 OTU 1 seq prokMSA_id:024153 AY037590 soil clone S058 2.28.4.6.3.016 OTU 1 seq prokMSA_id:026165 AF424255 delta MERTZ_21CM_284 2.28.4.6.3.017 OTU 1 seq prokMSA_id:026373 AF387627 Polyangium cellulosum strain 9741 complete 2.28.4.6.3.018 OTU 1 seq prokMSA_id:030991 AF234747 sludge A9 2.28.4.6.3.019 OTU 1 seq prokMSA_id:037853 AF254393 UASB_TL25 complete 2.28.4.6.3.020 OTU 1 seq prokMSA_id:037962 AJ252704 Rhizosphere soil clone RSC-II-106 2.28.4.6.3.021 OTU 1 seq prokMSA_id:038718 AB062751 Haliangium tepidum 2.28.4.6.3.022 OTU 2 seqs prokMSA_id:038791 AF031629 delta prokMSA_id:066013 AF382826 delta 2.28.4.6.3.023 OTU 1 seq prokMSA_id:042987 AY038451 delta clone CD3H8 2.28.4.6.3.024 OTU 1 seq prokMSA_id:045556 AF280857 mle1-27 2.28.4.6.3.025 OTU 1 seq prokMSA_id:046560 AY037592 soil clone S064 2.28.4.6.3.026 OTU 1 seq prokMSA_id:048487 AJ318168 delta clone BIrii41 2.28.4.6.3.027 OTU 1 seq prokMSA_id:049136 AJ318128 clone BIfdi19 2.28.4.6.3.028 OTU 1 seq prokMSA_id:050509 AJ252693 Rhizosphere soil clone RSC-II-72 2.28.4.6.3.029 OTU 1 seq prokMSA_id:055554 AF485785 clone BCTP37 2.28.4.6.3.030 OTU 1 seq prokMSA_id:059751 AY133445 clone OB3_39 2.28.4.6.3.031 OTU 1 seq prokMSA_id:063252 AF523971 clone FW46 2.28.4.6.3.032 OTU 1 seq prokMSA_id:064438 AY102884 clone BCM1-42B 2.28.4.6.3.033 OTU 1 seq prokMSA_id:065870 AF507459 soil clone C0100 2.28.4.6.3.034 OTU 1 seq prokMSA_id:066472 AY100619 clone cvf63085 2.28.4.6.3.035 OTU 1 seq prokMSA_id:067249 AF495438 clone F13.43 2.28.4.6.3.036 OTU 1 seq prokMSA_id:067293 AF495395 clone F10.28 2.28.4.6.3.037 OTU 1 seq prokMSA_id:067784 AF420357 isolate C1_B003 2.28.4.6.3.038 OTU 1 seq prokMSA_id:069926 AY038725 clone TAF-A127 2.28.4.6.3.039 OTU 1 seq prokMSA_id:070239 AF421890 Polyangium cellulosum strain NUST_6 2.28.4.6.3.040 OTU 1 seq prokMSA_id:071817 AF280858 mle1-29 2.28.4.6.3.041 OTU 1 seq prokMSA_id:072214 AF354167 delta isolate Eel-36e1D6 2.28.4.6.3.042 OTU 1 seq prokMSA_id:073433 AF280855 mle1-22 2.28.4.6.3.043 OTU 1 seq prokMSA_id:075061 AY154557 earthworm intestine clone lw62 2.28.4.6.3.044 OTU 1 seq prokMSA_id:075196 AJ534630 delta clone JG36-TzT-205 2.28.4.6.3.045 OTU 1 seq prokMSA_id:075311 AJ534629 delta clone JG36-TzT-168 2.28.4.6.3.046 OTU 1 seq prokMSA_id:075552 AJ532713 delta clone JG34-KF-14 2.28.4.6.3.047 OTU 1 seq prokMSA_id:076214 AJ532714 delta clone JG34-KF-243 2.28.4.6.3.048 OTU 1 seq prokMSA_id:077008 AJ518790 delta clone JG37-AG-15 2.28.4.6.3.049 OTU 1 seq prokMSA_id:078239 AJ535224 delta clone Hyd24-27 2.28.4.6.3.050 OTU 1 seq prokMSA_id:079211 AY187312 clone csbio160363 2.28.4.6.3.051 OTU 1 seq prokMSA_id:079495 AY187313 clone csbio160377 2.28.4.6.3.052 OTU 1 seq prokMSA_id:079558 AF382126 clone ZA3704c 2.28.4.6.3.053 OTU 1 seq prokMSA_id:079593 AY187357 clone csbio160144 2.28.4.6.3.054 OTU 1 seq prokMSA_id:079653 AY193162 clone BTM36 2.28.4.6.3.055 OTU 1 seq prokMSA_id:082579 AY214652 alpha clone SL2-1-B9 2.28.4.6.3.056 OTU 1 seq prokMSA_id:083418 AJ504437 cf. Anaeromyxobacter sp. clone 90D-58 2.28.4.6.3.057 OTU 2 seqs prokMSA_id:085080 AB097590 Thaxtera salina strain:SHK-1 prokMSA_id:084947 AB097591 Thaxtera salina strain:SMK-1-3 2.28.4.6.3.058 OTU 1 seq prokMSA_id:087071 AY268299 clone D1 small subunit 2.28.4.6.3.059 OTU 1 seq prokMSA_id:089395 AY327184 clone ZB8 2.28.4.6.3.060 OTU 1 seq prokMSA_id:092086 AY359841 delta clone cEIII50 2.28.4.6.3.061 OTU 1 seq prokMSA_id:092306 AY352453 delta clone NEVC6 2.28.4.6.3.062 OTU 1 seq prokMSA_id:093248 AJ581623 delta clone KCM-C-14 2.28.4.6.3.063 OTU 1 seq prokMSA_id:095987 AY225609 delta clone AT-s3-66 2.28.4.6.3.064 OTU 1 seq prokMSA_id:098504 AY225608 delta clone AT-s3-60 2.28.4.6.3.999 poor quality 91 seqs prokMSA_id:064072 AB087289 clone:CF1 prokMSA_id:064033 AB087338 clone:F29 prokMSA_id:045147 AF010013 prokMSA_id:048924 AF010044 prokMSA_id:035712 AF010047 prokMSA_id:025351 AF010076 prokMSA_id:025097 AF010084 prokMSA_id:021553 AF010089 prokMSA_id:073736 AF097795 clone 19520 prokMSA_id:037839 AF226193 maize root Zmrc183 prokMSA_id:031692 AF234052 #0319-2B3 prokMSA_id:044509 AF280961 clone JS22 prokMSA_id:068222 AF365500 clone BM89MF5BC11 prokMSA_id:068181 AF365550 clone BT49MF4BB11 prokMSA_id:068012 AF365742 clone BT60DS4BD12 prokMSA_id:055793 AF365782 clone BM89PA1BbB3 prokMSA_id:039640 AF367389 delta clone D062 prokMSA_id:022900 AF390944 clone ICBMG3 prokMSA_id:033334 AF392674 clone TCC1 prokMSA_id:018967 AF392676 clone TCF6 prokMSA_id:048624 AF392677 clone P2E10 prokMSA_id:049490 AF392679 clone SCA3 prokMSA_id:035357 AF392681 clone CRC8 prokMSA_id:032101 AF392684 clone CRA4 prokMSA_id:016721 AF392685 clone CBC2 prokMSA_id:031215 AF392686 clone CBD3 prokMSA_id:033650 AF392690 clone CDA4 prokMSA_id:046348 AF392692 clone CEB3 prokMSA_id:039316 AF392693 clone CEB5 prokMSA_id:049627 AF392694 clone LAD10 prokMSA_id:043270 AF392701 clone LEE4 prokMSA_id:071175 AF420356 isolate C1_B002 prokMSA_id:017836 AF428899 clone CR98-35-17 prokMSA_id:076497 AF431386 delta clone N12.45WL prokMSA_id:075185 AF431387 delta clone C16.12WL prokMSA_id:076692 AF431398 delta clone C46.27PG prokMSA_id:061244 AF432655 clone SMW4.104WL prokMSA_id:061214 AF432687 clone SMS9.15WL prokMSA_id:074951 AF432763 clone N41.122PG prokMSA_id:075662 AF432787 clone N13.33WL prokMSA_id:076874 AF432788 clone N13.61WL prokMSA_id:075055 AF432798 clone C20.13WL prokMSA_id:075009 AF432805 clone N29.14SM prokMSA_id:076414 AF432825 clone N41.20PG prokMSA_id:077020 AF432832 clone C49.54PG prokMSA_id:075630 AF432839 clone S53.37PG prokMSA_id:068887 AF445733 delta clone SM2F11 prokMSA_id:037322 AF446294 delta FL04H02 prokMSA_id:067090 AF499369 clone JCL9-96 prokMSA_id:067055 AF499415 clone BL-85 prokMSA_id:067052 AF499416 clone BL-121 prokMSA_id:065771 AF507604 soil clone C175 prokMSA_id:065756 AF507623 soil clone C1111 prokMSA_id:061141 AF530119 isolate MGP DGGE Band 20 prokMSA_id:047999 AJ005997 clone TBS5 prokMSA_id:041573 AJ310388 strain NS1114 prokMSA_id:043026 AJ421891 clone Alt9-K46 prokMSA_id:046952 AJ431309 clone 2_13 prokMSA_id:058337 AJ489423 clone NS-H12 prokMSA_id:055788 AJ518203 clone Mul2P1-50 prokMSA_id:057267 AJ518217 clone Mul2P1-88 prokMSA_id:057263 AJ518222 clone Mul2P2-12 prokMSA_id:057189 AJ518321 clone Neu2P1-44 prokMSA_id:057134 AJ518399 clone Neu4P1-92 prokMSA_id:056943 AJ518641 clone Sai1P1-97 prokMSA_id:094083 AJ582590 clone M50-04 prokMSA_id:049408 AY037617 soil clone S097 prokMSA_id:061272 AY044024 clone S9P.10WL prokMSA_id:075110 AY157088 delta isolate WB-32 prokMSA_id:079799 AY192315 delta clone S1a-10B prokMSA_id:080712 AY192324 delta clone S3-2C prokMSA_id:080986 AY193049 clone LLB13 prokMSA_id:081018 AY193288 clone BolA9 prokMSA_id:082827 AY214647 delta clone SL2-1-C6 prokMSA_id:083205 AY214659 delta clone SL2-1-B11 prokMSA_id:083311 AY214661 delta clone SL2-1-B1 prokMSA_id:086317 AY214699 delta clone SL2-2-F9F prokMSA_id:084228 AY214785 delta clone BB-1-B2 prokMSA_id:085752 AY242745 soil clone Tc131-36 prokMSA_id:085339 AY242746 soil clone Tc121-E05 prokMSA_id:089924 AY323193 beta clone A134-11 prokMSA_id:094898 AY374719 delta clone PI_6UC08 prokMSA_id:096984 AY394646 Polyangium sp. clone N10-6 prokMSA_id:010637 D26199 soil from paddy field clone PAD12. prokMSA_id:010636 D26257 soil from soybean field clone FIE4. prokMSA_id:010638 M94274 Chondromyces apiculatus str. Cm a2. prokMSA_id:010644 M94275 Chondromyces crocatus str. Cm c6. prokMSA_id:010648 M94279 Nannocystis exedens str. Na e1 ATCC 25963 . prokMSA_id:010655 M94280 Polyangium sp. str. Pl 4943. prokMSA_id:010656 M94282 Polyangium cellulosum subsp. ferrugineum str. SMP 456 ATCC 25531. prokMSA_id:010647 X68473 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.28.4.7 DESULFUROMONAS_GROUP 652 seqs 2.28.4.7.1 PEB.ACETYLENICUS_SUBGROUP 336 seqs 2.28.4.7.1.001 OTU 6 seqs prokMSA_id:072784 AF420369 isolate C1_B041 prokMSA_id:018366 AY062868 delta clone d1 prokMSA_id:090183 AY327190 clone ZB6 prokMSA_id:010660 X79412 Desulfuromusa bakii str. Gyprop DSM 7345 . prokMSA_id:010695 X79414 Desulfuromusa kysingii str. Kysw2 DSM 7343 . prokMSA_id:010692 X79415 Desulfuromusa succinoxidans str. Gylac DSM 8270 . 2.28.4.7.1.002 OTU 11 seqs prokMSA_id:046058 AB077348 delta clone:TYM--11 prokMSA_id:029428 AF424183 delta MERTZ_2CM_28 prokMSA_id:030677 AF424186 delta MERTZ_2CM_34 prokMSA_id:010694 AJ240967 clone Sva1045. prokMSA_id:010663 AJ240980 clone Sva1034. prokMSA_id:010664 AJ240983 clone Sva1033. prokMSA_id:010665 AJ241000 clone Sva0566. prokMSA_id:010666 AJ241010 clone Sva0556. prokMSA_id:048291 AJ271656 Pelobacter sp. clone A3b3 prokMSA_id:078882 AY177801 Desulfuromonas sp. clone SB2_94 prokMSA_id:080275 AY193143 clone Bol29 2.28.4.7.1.003 OTU 1 seq prokMSA_id:010693 AF142854 Desulfuromusa BURTON-36. 2.28.4.7.1.004 OTU 1 seq prokMSA_id:010691 AB015242 str. JTB36. 2.28.4.7.1.005 OTU 1 seq prokMSA_id:010690 AB015549 str. BD3-7. 2.28.4.7.1.006 OTU 1 seq prokMSA_id:010689 AB015533 str. BD2-3. 2.28.4.7.1.007 OTU 1 seq prokMSA_id:010688 AJ237601 Desulfobacterium anilini DSM 4660. 2.28.4.7.1.008 OTU 1 seq prokMSA_id:010687 AF159686 clone HstpL86. 2.28.4.7.1.009 OTU 1 seq prokMSA_id:010686 X77216 Pelobacter acidigallici str. MaGa12 DSM 2377 . 2.28.4.7.1.010 OTU 2 seqs prokMSA_id:010685 U23141 Pelobacter carbinolicus str. GraBd1 DSM 2380 . prokMSA_id:010683 X79413 Pelobacter carbinolicus str. GraBd1 DSM 2380 . 2.28.4.7.1.011 OTU 2 seqs prokMSA_id:052037 AF058010 RFLP108 prokMSA_id:010684 U23140 Desulfuromonas acetexigens DSM 1397 . 2.28.4.7.1.012 OTU 1 seq prokMSA_id:010682 AJ241020 clone Sva0679. 2.28.4.7.1.013 OTU 2 seqs prokMSA_id:035475 AF424239 delta MERTZ_21CM_60 prokMSA_id:010681 AJ241001 clone Sva0485. 2.28.4.7.1.014 OTU 1 seq prokMSA_id:010680 AB015243 str. JTB38. 2.28.4.7.1.015 OTU 1 seq prokMSA_id:010678 AF154096 clone BPC076. 2.28.4.7.1.016 OTU 1 seq prokMSA_id:010677 AF154094 clone BPC065. 2.28.4.7.1.017 OTU 1 seq prokMSA_id:010676 AF146242 clone CLEAR-19. 2.28.4.7.1.018 OTU 1 seq prokMSA_id:010675 AF186416 clone UC51f. 2.28.4.7.1.019 OTU 2 seqs prokMSA_id:010673 AF026994 clone OPS22. prokMSA_id:010674 AF026995 clone OPS86A. 2.28.4.7.1.020 OTU 1 seq prokMSA_id:010671 AF142945 clone PENDANT-34. 2.28.4.7.1.021 OTU 1 seq prokMSA_id:010670 AF142626 unnamed organism. 2.28.4.7.1.022 OTU 1 seq prokMSA_id:010668 X70955 Pelobacter acetylenicus str. WoAcyl DSM 2348. 2.28.4.7.1.023 OTU 1 seq prokMSA_id:010667 U41562 Pelobacter venetianus DSM 2394 . 2.28.4.7.1.024 OTU 1 seq prokMSA_id:010662 U28172 Desulfuromonas palmitatis str. SDBY1 ATCC 51701. 2.28.4.7.1.025 OTU 1 seq prokMSA_id:010661 AJ240985 clone Sva0853. 2.28.4.7.1.026 OTU 1 seq prokMSA_id:010659 AF142819 clone ACE-44. 2.28.4.7.1.027 OTU 1 seq prokMSA_id:010658 Y17712 Malonomonas rubra str. GraMal1 DSM 5091 . 2.28.4.7.1.028 OTU 1 seq prokMSA_id:016373 AF211260 delta CE49 2.28.4.7.1.029 OTU 1 seq prokMSA_id:016727 AF424187 delta MERTZ_2CM_36 2.28.4.7.1.030 OTU 1 seq prokMSA_id:016746 AJ252670 Rhizosphere soil clone RSC-II-6 2.28.4.7.1.031 OTU 1 seq prokMSA_id:016897 AJ390467 soil PBS-71 2.28.4.7.1.032 OTU 1 seq prokMSA_id:017185 AF424193 delta MERTZ_2CM_61 2.28.4.7.1.033 OTU 1 seq prokMSA_id:017883 AF422647 clone d038R 2.28.4.7.1.034 OTU 1 seq prokMSA_id:017923 AF424435 MERTZ_21CM_369 2.28.4.7.1.035 OTU 1 seq prokMSA_id:019507 AF424195 delta MERTZ_2CM_75 2.28.4.7.1.036 OTU 1 seq prokMSA_id:055571 AB074958 Chlamydiales clone:KB19 2.28.4.7.1.037 OTU 1 seq prokMSA_id:020650 AF424493 planctomycete MERTZ_21CM_213 2.28.4.7.1.038 OTU 1 seq prokMSA_id:021898 AF424237 delta MERTZ_0CM_327 2.28.4.7.1.039 OTU 1 seq prokMSA_id:024509 AF130847 Entotheonella palauensis 2.28.4.7.1.040 OTU 1 seq prokMSA_id:025330 AF407203 clone GIF12 2.28.4.7.1.041 OTU 4 seqs prokMSA_id:073726 AF354153 delta isolate Eel-TE1A11 prokMSA_id:071000 AF354154 delta isolate Eel-TE1A4 prokMSA_id:037225 AF424258 delta MERTZ_21CM_313 prokMSA_id:025416 AF424259 delta MERTZ_21CM_326 2.28.4.7.1.042 OTU 1 seq prokMSA_id:026907 AF328182 clone KS34 2.28.4.7.1.043 OTU 2 seqs prokMSA_id:072950 AF354159 delta isolate SB-24e1E8 prokMSA_id:029670 AF354162 delta isolate SB-24e1D6 2.28.4.7.1.044 OTU 2 seqs prokMSA_id:030059 AF355055 Arctic95B-14 prokMSA_id:033009 AY028222 Verrucomicrobia Arctic95B-10 2.28.4.7.1.045 OTU 1 seq prokMSA_id:031035 AJ252685 Rhizosphere soil clone RSC-II-54 2.28.4.7.1.046 OTU 1 seq prokMSA_id:032071 AB062771 clone:BCf1-10 2.28.4.7.1.047 OTU 1 seq prokMSA_id:032155 AF211267 delta CE103 2.28.4.7.1.048 OTU 1 seq prokMSA_id:034999 AF224851 clone Car122fc 2.28.4.7.1.049 OTU 2 seqs prokMSA_id:035486 AJ252629 Agricultural soil clone SC-I-29 prokMSA_id:075356 AY150898 alpha clone GR10 2.28.4.7.1.050 OTU 1 seq prokMSA_id:035746 AF424200 delta MERTZ_2CM_117 2.28.4.7.1.051 OTU 1 seq prokMSA_id:037264 AF316773 Crater Lake CL500-15 2.28.4.7.1.052 OTU 1 seq prokMSA_id:038475 AF259645 delta CtaxTah-27 2.28.4.7.1.053 OTU 1 seq prokMSA_id:038614 AJ296569 GR-WP33-30 clone GR-WP33-30 2.28.4.7.1.054 OTU 1 seq prokMSA_id:039191 AF424264 delta MERTZ_21CM_402 2.28.4.7.1.055 OTU 1 seq prokMSA_id:040517 AF268993 SBRH63 2.28.4.7.1.056 OTU 1 seq prokMSA_id:040927 AF424249 delta MERTZ_21CM_235 2.28.4.7.1.057 OTU 2 seqs prokMSA_id:051450 AF357914 Desulfuromonas michiganensis strain BRS1 prokMSA_id:041059 AF357915 Desulfuromonas michiganensis strain BB1 2.28.4.7.1.058 OTU 1 seq prokMSA_id:043402 AF224777 clone Car102rb 2.28.4.7.1.059 OTU 1 seq prokMSA_id:044979 AF296205 SY6-56 2.28.4.7.1.060 OTU 1 seq prokMSA_id:045058 AF424232 delta MERTZ_0CM_104 2.28.4.7.1.061 OTU 2 seqs prokMSA_id:050443 AF469370 clone 33-PA95B98 prokMSA_id:057734 AY075131 marine Vent 24 2.28.4.7.1.062 OTU 1 seq prokMSA_id:045793 AJ252620 Agricultural soil clone SC-I-17 2.28.4.7.1.063 OTU 1 seq prokMSA_id:046410 AB031631 delta TIHP368-09 2.28.4.7.1.064 OTU 1 seq prokMSA_id:047900 AF224796 clone Car7ra 2.28.4.7.1.065 OTU 1 seq prokMSA_id:048167 AF280847 mle1-8 2.28.4.7.1.066 OTU 1 seq prokMSA_id:048488 AF424489 planctomycete MERTZ_21CM_160 2.28.4.7.1.067 OTU 1 seq prokMSA_id:048897 AJ252674 Rhizosphere soil clone RSC-II-13 2.28.4.7.1.068 OTU 1 seq prokMSA_id:049511 AF424219 delta MERTZ_2CM_254 2.28.4.7.1.069 OTU 1 seq prokMSA_id:072297 AF424233 delta MERTZ_0CM_142 2.28.4.7.1.070 OTU 1 seq prokMSA_id:051478 AJ297470 delta Sva130a 2.28.4.7.1.071 OTU 1 seq prokMSA_id:051583 AF314427 PHOS-HD29 2.28.4.7.1.072 OTU 1 seq prokMSA_id:052634 AF424218 delta MERTZ_2CM_249 2.28.4.7.1.073 OTU 1 seq prokMSA_id:054232 AF424230 delta MERTZ_0CM_59 2.28.4.7.1.074 OTU 1 seq prokMSA_id:060573 AF407728 clone B83 2.28.4.7.1.075 OTU 2 seqs prokMSA_id:060802 AF491654 clone SFD1-10 prokMSA_id:060785 AF491673 clone SFD1-40 2.28.4.7.1.076 OTU 1 seq prokMSA_id:061879 AF449230 epsilon clone R103-B63 2.28.4.7.1.077 OTU 2 seqs prokMSA_id:062472 AF513968 planctomycete clone LA7-A16N prokMSA_id:064245 AF515635 planctomycete clone LA4-B37N 2.28.4.7.1.078 OTU 1 seq prokMSA_id:062663 AF507900 Verrucomicrobia clone ML635J-58 2.28.4.7.1.079 OTU 1 seq prokMSA_id:063111 AY093471 clone MB-B2-106 2.28.4.7.1.080 OTU 1 seq prokMSA_id:063116 AY093467 clone MB-A2-137 2.28.4.7.1.081 OTU 1 seq prokMSA_id:063257 AF523967 clone FW136 2.28.4.7.1.082 OTU 1 seq prokMSA_id:063329 AF523885 clone RCP2-62 2.28.4.7.1.083 OTU 1 seq prokMSA_id:066635 AY094495 delta clone 8-42 2.28.4.7.1.084 OTU 1 seq prokMSA_id:066925 AJ306774 clone SHA-72 2.28.4.7.1.085 OTU 1 seq prokMSA_id:074553 AF379700 clone SL33 2.28.4.7.1.086 OTU 1 seq prokMSA_id:074843 AJ441215 delta clone P. palm C/A 79 2.28.4.7.1.087 OTU 1 seq prokMSA_id:074929 AJ519631 delta clone Sh765B-TzT-42 2.28.4.7.1.088 OTU 1 seq prokMSA_id:075261 AJ518801 delta clone JG37-AG-133 2.28.4.7.1.089 OTU 1 seq prokMSA_id:075596 AY164426 delta clone DLIB-95 2.28.4.7.1.090 OTU 1 seq prokMSA_id:075874 AJ519650 clone Sh765B-TzT-35 2.28.4.7.1.091 OTU 1 seq prokMSA_id:076001 AJ518803 delta clone JG37-AG-140 2.28.4.7.1.092 OTU 1 seq prokMSA_id:076094 AJ519663 delta clone GuBH2-AD/TzT-67 2.28.4.7.1.093 OTU 1 seq prokMSA_id:076436 AJ532716 delta clone JG34-KF-383 2.28.4.7.1.094 OTU 2 seqs prokMSA_id:076733 AY164341 delta clone ALIB-19 prokMSA_id:076542 AY164432 delta clone ULIB-16 2.28.4.7.1.095 OTU 1 seq prokMSA_id:076933 AJ518792 delta clone JG37-AG-33 2.28.4.7.1.096 OTU 1 seq prokMSA_id:076936 AJ532715 delta clone JG34-KF-369 2.28.4.7.1.097 OTU 1 seq prokMSA_id:077061 AJ518793 delta clone JG37-AG-55 2.28.4.7.1.098 OTU 1 seq prokMSA_id:077106 AJ518796 delta clone JG37-AG-91 2.28.4.7.1.099 OTU 1 seq prokMSA_id:077161 AF458286 delta ML1218M-7 2.28.4.7.1.100 OTU 1 seq prokMSA_id:078077 AJ535229 delta clone Hyd89-13 2.28.4.7.1.101 OTU 1 seq prokMSA_id:078365 AJ535245 delta clone Hyd89-23 2.28.4.7.1.102 OTU 1 seq prokMSA_id:078716 AY177793 Desulfuromonas sp. clone LH2_14 2.28.4.7.1.103 OTU 1 seq prokMSA_id:078867 AY177790 Desulfuromonas sp. clone SB2_81 2.28.4.7.1.104 OTU 1 seq prokMSA_id:078912 AY177804 Desulfuromonadales 2.28.4.7.1.105 OTU 1 seq prokMSA_id:079016 AJ536885 clone JG30-KF-CM5 2.28.4.7.1.106 OTU 1 seq prokMSA_id:079161 AJ431234 Cytophaga sp. Dex80-43 strain Dex80-43 2.28.4.7.1.107 OTU 1 seq prokMSA_id:079310 AY185328 Desulfuromonas sp. clone AKS67 2.28.4.7.1.108 OTU 1 seq prokMSA_id:079353 AF382109 clone ZA2615c 2.28.4.7.1.109 OTU 1 seq prokMSA_id:079388 AB099991 sequences clone: IheB4-26 2.28.4.7.1.110 OTU 1 seq prokMSA_id:079502 AJ431235 Cytophaga sp. Dex80-64 strain Dex80-64 2.28.4.7.1.111 OTU 1 seq prokMSA_id:079871 AY193150 clone BMS30 2.28.4.7.1.112 OTU 1 seq prokMSA_id:080092 AY193244 clone Bol44 2.28.4.7.1.113 OTU 1 seq prokMSA_id:080331 AB094862 clone:OHKB4.96 2.28.4.7.1.114 OTU 1 seq prokMSA_id:080396 AY193132 clone Bol11 2.28.4.7.1.115 OTU 1 seq prokMSA_id:080598 AY193234 clone Bol10 2.28.4.7.1.116 OTU 1 seq prokMSA_id:081004 AY193153 clone BTM96 2.28.4.7.1.117 OTU 2 seqs prokMSA_id:093933 AJ582056 clone KCM-C-5 prokMSA_id:081666 AY218639 clone KD4-59 2.28.4.7.1.118 OTU 1 seq prokMSA_id:081732 AY214193 clone ZZ14C7 2.28.4.7.1.119 OTU 1 seq prokMSA_id:082932 AY274134 clone D126 2.28.4.7.1.120 OTU 1 seq prokMSA_id:083136 AY214766 epsilon clone BB-1-D9 2.28.4.7.1.121 OTU 3 seqs prokMSA_id:086250 BX294746 planctomycete clone CY0ARA027B03 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant prokMSA_id:085518 BX294837 planctomycete clone CY0ARA031D04 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:083585 BX294883 planctomycete clone CY0ARA032E06 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.28.4.7.1.122 OTU 2 seqs prokMSA_id:085842 BX294678 planctomycete clone CY0ARA025A05 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant prokMSA_id:084726 BX294710 planctomycete clone CY0ARA025G12 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.28.4.7.1.123 OTU 1 seq prokMSA_id:085158 BX294856 planctomycete clone CY0ARA031G08 of environmental sample of planctomycete obtained from aerobic basin from France Evry municipal wastewater treatment plant 2.28.4.7.1.124 OTU 1 seq prokMSA_id:085294 AY266450 planctomycete clone B4 2.28.4.7.1.125 OTU 1 seq prokMSA_id:086075 AY221041 clone CCM11a 2.28.4.7.1.126 OTU 1 seq prokMSA_id:087827 AY279075 clone CS054 2.28.4.7.1.127 OTU 1 seq prokMSA_id:088321 AY245460 delta clone ML23_ANME2 2.28.4.7.1.128 OTU 1 seq prokMSA_id:088761 AY245488 ML28_ANME6 2.28.4.7.1.129 OTU 1 seq prokMSA_id:089599 AY289452 soil clone ABS-13 2.28.4.7.1.130 OTU 1 seq prokMSA_id:090451 AY327186 clone ZB5 2.28.4.7.1.131 OTU 1 seq prokMSA_id:091949 AY345497 clone W4-B35 2.28.4.7.1.132 OTU 1 seq prokMSA_id:092320 AY354169 clone pIR3BG05 2.28.4.7.1.133 OTU 1 seq prokMSA_id:093483 AJ581602 delta clone KCM-B-53 2.28.4.7.1.134 OTU 1 seq prokMSA_id:094402 AY373394 clone A101 complete 2.28.4.7.1.135 OTU 1 seq prokMSA_id:094595 AY373395 clone A110 complete 2.28.4.7.1.136 OTU 1 seq prokMSA_id:096915 AY225607 delta clone AT-s3-34 2.28.4.7.1.137 OTU 1 seq prokMSA_id:097380 AY375137 clone D132 2.28.4.7.1.999 poor quality 165 seqs prokMSA_id:072287 AB081540 Oil-MT1-7 prokMSA_id:068474 AB081547 Tol-M2-3 prokMSA_id:068472 AB081549 Tol-MT1-5 prokMSA_id:068468 AB081552 Etb-MT1-9 prokMSA_id:056161 AB087314 clone:CF43 prokMSA_id:092824 AB116925 clone:LB4 prokMSA_id:092305 AB116932 clone:LB11 prokMSA_id:070762 AF104269 Geo-43 prokMSA_id:073687 AF107503 SY1-54 prokMSA_id:018535 AF128667 soil C0186 prokMSA_id:070337 AF142627 Entotheonella palauensis prokMSA_id:044952 AF142628 Entotheonella palauensis prokMSA_id:026802 AF146267 SCALE-15 prokMSA_id:047057 AF175634 WJGRT-116 prokMSA_id:050423 AF186458 sponge symbiont PAWS72 prokMSA_id:020734 AF209012 vent ML-16 prokMSA_id:070585 AF209015 vent ML-18 prokMSA_id:070558 AF209017 vent ML-20 prokMSA_id:072709 AF209018 vent ML-21 prokMSA_id:017153 AF223263 delta B2M24 prokMSA_id:073242 AF223273 delta B2M65 prokMSA_id:025025 AF223275 delta B2M29 prokMSA_id:043323 AF224808 clone Car33fb prokMSA_id:025623 AF224813 clone Car86rb prokMSA_id:016986 AF224841 clone Car111fc prokMSA_id:032088 AF228142 Marine sediment DGGE band b prokMSA_id:052486 AF228143 Marine sediment DGGE band c prokMSA_id:031983 AF228144 Marine sediment DGGE band d prokMSA_id:048181 AF228147 Marine sediment DGGE band f prokMSA_id:052692 AF289911 OS-K group Kmlps6-16 prokMSA_id:033774 AF295758 isolate RFLP 428 prokMSA_id:043731 AF295760 isolate RFLP 6 prokMSA_id:041816 AF321072 clone A8 prokMSA_id:069023 AF321206 delta wpd_20 prokMSA_id:069335 AF321207 delta wpd_21 prokMSA_id:017314 AF332275 clone C12-4 prokMSA_id:030487 AF332285 clone C12-3 prokMSA_id:021692 AF332318 clone T26-29 prokMSA_id:035531 AF332322 clone T26-1 prokMSA_id:019742 AF332343 clone C26-24 prokMSA_id:071195 AF360640 clone INOC-RNA29 prokMSA_id:055568 AF365479 clone BM89MF1BG11 prokMSA_id:068199 AF365528 clone BM89MF5BG7b prokMSA_id:068195 AF365532 clone BM89MF5BH12b prokMSA_id:068057 AF365691 clone BT60DS1BC10 prokMSA_id:074594 AF365746 clone BT60DS4BE10 prokMSA_id:068000 AF365758 clone BT60DS4BF5 prokMSA_id:067972 AF365794 clone BM89PA1BbG12 prokMSA_id:067951 AF365821 clone BT60PA10BB4 prokMSA_id:067933 AF365840 clone BT60PA10BE12 prokMSA_id:028844 AF369728 delta clone 296 prokMSA_id:051658 AF379694 clone SL23 prokMSA_id:049268 AF392800 clone LBD7 prokMSA_id:027756 AF422616 clone t046 prokMSA_id:017398 AF427926 clone 4H prokMSA_id:031195 AF428638 clone CRD99-60 prokMSA_id:034268 AF428809 clone CR98-24-03 prokMSA_id:020951 AF429261 clone CR99-2-75 prokMSA_id:076854 AF432826 clone N41.22PG prokMSA_id:021383 AF434971 sponge symbiont JAWS14 prokMSA_id:027579 AF441952 firmicute clone CD12C7 prokMSA_id:038309 AF441959 clone CD12B5 prokMSA_id:047942 AF441968 firmicute clone CD12A1 prokMSA_id:039845 AF442004 firmicute clone CD12D11 prokMSA_id:068866 AF459066 E5-46-SC1-138 prokMSA_id:056462 AF499316 clone JCL4-49 prokMSA_id:067105 AF499353 clone JCL9-105 prokMSA_id:067092 AF499367 clone JCL9-97 prokMSA_id:067091 AF499368 clone JCL9-101 prokMSA_id:067051 AF499417 clone BL-95 prokMSA_id:067047 AF499419 clone BL-123 prokMSA_id:065853 AF507472 soil clone S08 prokMSA_id:065775 AF507601 soil clone C170 prokMSA_id:062658 AF507901 Verrucomicrobia clone ML635J-13 prokMSA_id:066334 AF508203 clone CN MLS Band8 prokMSA_id:066331 AF508206 clone CN MLS Band10_2 prokMSA_id:061143 AF530115 isolate MGP DGGE Band 17B prokMSA_id:058835 AF534235 delta clone delta da2 prokMSA_id:056102 AF534247 delta clone delta da7 prokMSA_id:058822 AF534248 delta clone delta da8 prokMSA_id:058820 AF534252 delta clone delta da12 prokMSA_id:059930 AF538274 delta DGGE gel band 8 prokMSA_id:055777 AF544866 clone D1C-74 prokMSA_id:020216 AJ289930 1204-51l prokMSA_id:073148 AJ289932 1204-61l prokMSA_id:028657 AJ296616 Pelobacter sp. clone GR-WP54-1 prokMSA_id:038529 AJ297457 myxobacterium Sva0767b prokMSA_id:073607 AJ297616 clone C44K14 prokMSA_id:071489 AJ305055 delta 43-4 prokMSA_id:089505 AJ315788 1clone 0 prokMSA_id:060165 AJ347048 clone TK67 prokMSA_id:021983 AJ421893 clone Alt9-K48 prokMSA_id:037256 AJ437453 clone 1_32_312 prokMSA_id:055499 AJ489427 clone NS-C5 prokMSA_id:086233 AJ495612 delta isolate SA-12 prokMSA_id:085020 AJ495639 delta isolate SA-43 prokMSA_id:057417 AJ517856 clone mCMC61.4 prokMSA_id:057250 AJ518245 clone Mul2P2-45 prokMSA_id:057151 AJ518376 clone Neu4P1-52 prokMSA_id:057112 AJ518417 clone Neu4P3-18 prokMSA_id:057109 AJ518428 clone Neu4P3-3 prokMSA_id:057074 AJ518472 clone Qui2P1-100 prokMSA_id:057022 AJ518541 clone Qui4P1-48 prokMSA_id:057016 AJ518546 clone Qui4P1-55 prokMSA_id:056992 AJ518577 clone Qui4P2-35 prokMSA_id:071996 AJ518589 clone Qui4P2-51 prokMSA_id:056957 AJ518618 clone Sai1P1-1 prokMSA_id:056924 AJ518666 clone Sai2P2-62 prokMSA_id:056860 AJ518741 clone Sai4P3-67 prokMSA_id:066967 AY038415 clone CD5F2 prokMSA_id:038377 AY038510 clone CD1H2 prokMSA_id:061416 AY043821 delta clone SMS9.119WL prokMSA_id:061371 AY043870 actinobacterium clone SMW4.124WL prokMSA_id:022451 AY062869 delta clone d3 prokMSA_id:023635 AY062871 delta clone d5 prokMSA_id:030371 AY062873 delta clone d7 prokMSA_id:023873 AY062874 delta clone d8 prokMSA_id:065020 AY095832 delta ARCT2-18 prokMSA_id:062245 AY123211 delta clone ca39 prokMSA_id:062242 AY123213 delta clone ca46 prokMSA_id:062246 AY123215 delta clone ca6 prokMSA_id:062241 AY123217 delta clone ca63 prokMSA_id:059745 AY133447 clone OB3_111 prokMSA_id:070398 AY143775 Pelobacter sp. clone Pr4 prokMSA_id:080300 AY192302 delta clone W3-3E prokMSA_id:080804 AY193252 clone Bol58 prokMSA_id:086224 AY214630 delta clone SL2-1-E2 prokMSA_id:084557 AY214767 delta clone BB-1-D7 prokMSA_id:082654 AY214773 epsilon clone BB-1-C9 prokMSA_id:082674 AY226284 clone DBBB-23 prokMSA_id:087928 AY274241 delta isolate DGGE band GWS-AG-7 prokMSA_id:087197 AY274248 delta isolate DGGE band GWS-SE-6 prokMSA_id:087623 AY283101 delta clone NS-23 prokMSA_id:087619 AY283103 delta clone NS-26 prokMSA_id:089004 AY304027 soil clone Dpcom66 prokMSA_id:088379 AY323157 delta clone A115-17 prokMSA_id:091325 AY344409 clone K60-1 prokMSA_id:093664 AY361922 clone P8-GEN-10 prokMSA_id:093622 AY361939 clone P8-GEO-2 prokMSA_id:093534 AY361942 clone P8-GEO-5 prokMSA_id:094660 AY374670 delta clone PI_6N03 prokMSA_id:095151 AY374672 delta clone PI_6N21 prokMSA_id:094582 AY374697 delta clone PI_6BD01 prokMSA_id:094506 AY374698 delta clone PI_6BE02 prokMSA_id:094958 AY374717 delta clone PI_6TB08 prokMSA_id:094807 AY374726 delta clone PI_6TD04 prokMSA_id:094312 AY374737 delta clone PI_nr21_c3 prokMSA_id:095074 AY374748 delta clone PI_r126_c2 prokMSA_id:094525 AY374775 delta clone PI_r92_c2 prokMSA_id:095129 AY374793 delta clone PI_nr3_c7 prokMSA_id:094387 AY374810 delta clone PI_r96_c3 prokMSA_id:094690 AY374879 delta clone PI_6RA04 prokMSA_id:094588 AY374892 delta clone PI_6TC01 prokMSA_id:094612 AY374896 delta clone PI_6RE02 prokMSA_id:094388 AY374905 delta clone PI_6UH04 prokMSA_id:094446 AY374907 delta clone PI_6VH02 prokMSA_id:094415 AY374936 delta clone PI_r139_c2 prokMSA_id:094911 AY374938 delta clone PI_r144_c2 prokMSA_id:094330 AY374958 delta clone PI_r29_c4 prokMSA_id:094603 AY374962 delta clone PI_r37_c3 prokMSA_id:010672 U49748 Desulfuromonas chloroethenica str. TT4B. prokMSA_id:027783 U85480 sulfate-reducing A01 from an uncultivated organism prokMSA_id:010679 X97117 str. TM76. prokMSA_id:074835 Z77595 1-700 C5 prokMSA_id:010669 Z77637 str. 2-400 C2.5. 2.28.4.7.2 DSM.ACETOXIDANS_SUBGROUP 61 seqs 2.28.4.7.2.001 OTU 1 seq prokMSA_id:010704 AJ241021 clone Sva0590. 2.28.4.7.2.002 OTU 1 seq prokMSA_id:010703 AB013831 str. 32.a. 2.28.4.7.2.003 OTU 1 seq prokMSA_id:010701 AF149887 str. 09.96.18. 2.28.4.7.2.004 OTU 1 seq prokMSA_id:010700 U81766 clone vadinHA49. 2.28.4.7.2.005 OTU 1 seq prokMSA_id:010699 Y11560 Desulfuromonas thiophila str. NZ27 DSMZ 8987 . 2.28.4.7.2.006 OTU 1 seq prokMSA_id:056683 AF543496 clone AS6 2.28.4.7.2.007 OTU 1 seq prokMSA_id:023042 AF058009 RFLP105 2.28.4.7.2.008 OTU 1 seq prokMSA_id:024543 AF293008 Green Bay ferromanganous micronodule MND4 2.28.4.7.2.009 OTU 1 seq prokMSA_id:025981 AF424231 delta MERTZ_0CM_103 2.28.4.7.2.010 OTU 1 seq prokMSA_id:026349 AF424217 delta MERTZ_2CM_244 2.28.4.7.2.011 OTU 1 seq prokMSA_id:029256 AF424238 delta MERTZ_21CM_34 2.28.4.7.2.012 OTU 1 seq prokMSA_id:035822 AY062878 delta clone d13 2.28.4.7.2.013 OTU 2 seqs prokMSA_id:052449 AY062875 delta clone d9 prokMSA_id:038853 AY062880 delta clone d14 2.28.4.7.2.014 OTU 1 seq prokMSA_id:047596 AF424492 planctomycete MERTZ_21CM_209 2.28.4.7.2.015 OTU 1 seq prokMSA_id:063577 AB069792 clone:CS5.7 2.28.4.7.2.016 OTU 1 seq prokMSA_id:076391 AJ519664 delta clone GuBH2-AG-114 2.28.4.7.2.017 OTU 1 seq prokMSA_id:081506 AY155599 Geothermobacter ehrlichii 2.28.4.7.2.018 OTU 1 seq prokMSA_id:083746 BX294801 planctomycete clone CY0ARA028E10 of environmental sample of planctomycete obtained from anoxic basin from France Evry municipal wastewater treatment plant 2.28.4.7.2.019 OTU 1 seq prokMSA_id:088339 AY289453 soil clone DS-7 2.28.4.7.2.020 OTU 1 seq prokMSA_id:088848 AJ567570 delta clone MBMPE71 2.28.4.7.2.021 OTU 1 seq prokMSA_id:091467 AY344435 clone L7-64 2.28.4.7.2.022 OTU 1 seq prokMSA_id:095546 AY211682 delta clone GoM GC234 630E 2.28.4.7.2.999 poor quality 38 seqs prokMSA_id:010702 AB013830 str. 36.l. prokMSA_id:077238 AB075095 clone:KSS10 prokMSA_id:034868 AF019930 Desulfuromonas sp. CD-1 prokMSA_id:010697 AF019931 Geobacter sp. str. FD-1. prokMSA_id:010698 AF019933 Geobacter sp. str. SDB-1. prokMSA_id:037123 AF019934 Geobacter sp. SDB-2 prokMSA_id:037878 AF149888 09.96.61 prokMSA_id:049394 AF149889 07.95.20 prokMSA_id:074349 AF338766 clone L prokMSA_id:032028 AF339853 clone B prokMSA_id:068251 AF365469 clone BM89MF1BE3 prokMSA_id:030767 AF392699 clone LBE10 prokMSA_id:046047 AF423252 soil clone 364-2 prokMSA_id:065890 AF507434 soil clone C0132 prokMSA_id:065620 AF507779 soil clone S1202 prokMSA_id:058832 AF534238 delta clone delta da5 prokMSA_id:058821 AF534251 delta clone delta da11 prokMSA_id:051449 AJ232820 clone LBS10 prokMSA_id:016762 AJ232821 clone LBS9 prokMSA_id:017487 AJ296612 GR-WP59-1 clone GR-WP59-1 prokMSA_id:025810 AY062870 delta clone d4 prokMSA_id:046460 AY062872 delta clone d6 prokMSA_id:028236 AY062877 delta clone d11 prokMSA_id:028045 AY062879 delta clone d12 prokMSA_id:062253 AY123203 delta clone ca2 prokMSA_id:056194 AY123204 delta clone ca21 prokMSA_id:062250 AY123205 delta clone ca22 prokMSA_id:062248 AY123209 delta clone ca37 prokMSA_id:062247 AY123210 delta clone ca38 prokMSA_id:062243 AY123216 delta clone ca62 prokMSA_id:062240 AY123219 delta clone ca70 prokMSA_id:062234 AY123220 delta clone ca74 prokMSA_id:062231 AY123221 delta clone ca8 prokMSA_id:087652 AY283102 delta clone NS-24 prokMSA_id:094972 AY374682 delta clone PI_6G45 prokMSA_id:094832 AY374688 delta clone PI_6BA03 prokMSA_id:010696 M26634 Desulfuromonas acetoxidans str. 11070 DSM 684 . prokMSA_id:017094 U81769 clone vadinIA79 2.28.4.7.3 ENVIRONMENTAL_CLONE_PAD48 1 seq 2.28.4.7.3.999 poor quality 1 seq prokMSA_id:010705 D26235 soil from paddy field clone PAD48. 2.28.4.7.4 GBC.METALLIREDUCENS_SUBGROUP 254 seqs 2.28.4.7.4.001 OTU 2 seqs prokMSA_id:034292 AF422626 clone d006 prokMSA_id:010735 U13928 Geobacter sulfurreducens str. PCA ATCC 51573 . 2.28.4.7.4.002 OTU 1 seq prokMSA_id:010733 Y19190 Geobacter sp. str. CdA-2. 2.28.4.7.4.003 OTU 3 seqs prokMSA_id:010730 AB013266 str. NKB14. prokMSA_id:010731 AB013267 str. NKB15. prokMSA_id:010732 AB013268 str. NKB16. 2.28.4.7.4.004 OTU 1 seq prokMSA_id:010729 U96918 Geobacter akaganeitreducens str. Dfr2. 2.28.4.7.4.005 OTU 1 seq prokMSA_id:010728 U96917 Geobacter arculus str. Dfr1. 2.28.4.7.4.006 OTU 1 seq prokMSA_id:010726 AF019929 Geobacter sp. str. Ala-6. 2.28.4.7.4.007 OTU 1 seq prokMSA_id:010724 AF154103 clone GCA047. 2.28.4.7.4.008 OTU 1 seq prokMSA_id:010722 AF146233 clone CLEAR-9. 2.28.4.7.4.009 OTU 2 seqs prokMSA_id:010721 AJ009498 clone SJA-162. prokMSA_id:084060 AY261808 delta clone PD-UASB-8 2.28.4.7.4.010 OTU 1 seq prokMSA_id:010720 AJ009496 clone SJA-152. 2.28.4.7.4.011 OTU 1 seq prokMSA_id:010719 AJ009485 clone SJA-111. 2.28.4.7.4.012 OTU 1 seq prokMSA_id:010717 U62848 clone RB28. 2.28.4.7.4.013 OTU 1 seq prokMSA_id:010718 AJ009465 clone SJA-51. 2.28.4.7.4.014 OTU 1 seq prokMSA_id:010715 U62840 clone RB17. 2.28.4.7.4.015 OTU 1 seq prokMSA_id:010714 X70954 Pelobacter propionicus str. OttBd1 DSM 2379 . 2.28.4.7.4.016 OTU 1 seq prokMSA_id:010710 AF146254 clone CLEAR-32. 2.28.4.7.4.017 OTU 4 seqs prokMSA_id:022464 AF335182 Geobacter grbicium strain TACP-2 complete prokMSA_id:029370 AF335183 Geobacter grbicium strain TACP-5 complete prokMSA_id:010709 L07834 Geobacter metallireducens str. GS-15 ATCC 53774 . prokMSA_id:095149 NZ_AAAS010 Geobacter metallireducens Gmet_14 whole genome shotgun 2.28.4.7.4.018 OTU 1 seq prokMSA_id:010708 Y19191 Geobacter sp. str. CdA-3. 2.28.4.7.4.019 OTU 1 seq prokMSA_id:010707 U41561 Geobacter "chapelleii" str. 172. 2.28.4.7.4.020 OTU 1 seq prokMSA_id:016378 AF424194 delta MERTZ_2CM_70 2.28.4.7.4.021 OTU 1 seq prokMSA_id:016437 AF424236 delta MERTZ_0CM_225 2.28.4.7.4.022 OTU 1 seq prokMSA_id:018006 AF145867 Metal-contaminated soil clone K20-79 2.28.4.7.4.023 OTU 1 seq prokMSA_id:018952 AJ307942 mRNA clone sipK44 2.28.4.7.4.024 OTU 1 seq prokMSA_id:019377 AF424205 delta MERTZ_2CM_138 2.28.4.7.4.025 OTU 1 seq prokMSA_id:019949 AF422614 clone t044 2.28.4.7.4.026 OTU 1 seq prokMSA_id:020001 AF229784 TA11 2.28.4.7.4.027 OTU 1 seq prokMSA_id:020323 AF424253 delta MERTZ_21CM_270 2.28.4.7.4.028 OTU 1 seq prokMSA_id:020537 AB077356 clone:TYM--19 2.28.4.7.4.029 OTU 1 seq prokMSA_id:022312 AF229788 TA15 2.28.4.7.4.030 OTU 1 seq prokMSA_id:023462 AY013644 Banisveld landfill BVB71 2.28.4.7.4.031 OTU 2 seqs prokMSA_id:049319 AF229783 TA10 prokMSA_id:024410 AJ249102 SHA-22 2.28.4.7.4.032 OTU 1 seq prokMSA_id:026084 AF447134 clone TDC-029 2.28.4.7.4.033 OTU 1 seq prokMSA_id:028110 AY013648 Banisveld landfill BVB33 2.28.4.7.4.034 OTU 1 seq prokMSA_id:028314 AF424226 delta MERTZ_2CM_331 2.28.4.7.4.035 OTU 1 seq prokMSA_id:029359 AF424229 delta MERTZ_0CM_49 2.28.4.7.4.036 OTU 1 seq prokMSA_id:029387 AF229787 TA14 2.28.4.7.4.037 OTU 1 seq prokMSA_id:029943 AF328188 clone KS47 2.28.4.7.4.038 OTU 1 seq prokMSA_id:030263 AF424315 MERTZ_0CM_292 2.28.4.7.4.039 OTU 1 seq prokMSA_id:030584 AY013645 Banisveld landfill BVB66 2.28.4.7.4.040 OTU 1 seq prokMSA_id:030876 AJ297469 delta Sva0669 2.28.4.7.4.041 OTU 1 seq prokMSA_id:030882 AF424223 delta MERTZ_2CM_306 2.28.4.7.4.042 OTU 1 seq prokMSA_id:032027 AF223382 Trichlorobacter thiogenes 2.28.4.7.4.043 OTU 1 seq prokMSA_id:033856 AF424378 spirochete MERTZ_21CM_246 2.28.4.7.4.044 OTU 1 seq prokMSA_id:034087 AF424407 candidate division OP3 MERTZ_2CM_210 2.28.4.7.4.045 OTU 1 seq prokMSA_id:034143 AJ249114 SHA-207 2.28.4.7.4.046 OTU 2 seqs prokMSA_id:046313 AB064687 clone:NK210 prokMSA_id:036218 AB064698 clone:NK224 2.28.4.7.4.047 OTU 1 seq prokMSA_id:058310 AF543506 clone BA9 2.28.4.7.4.048 OTU 1 seq prokMSA_id:037152 AY013647 Banisveld landfill BVB45 2.28.4.7.4.049 OTU 1 seq prokMSA_id:037498 AF402980 clone 2.28.4.7.4.050 OTU 1 seq prokMSA_id:037817 AJ390444 soil PBS-II-15 2.28.4.7.4.051 OTU 1 seq prokMSA_id:037994 AF224792 clone Car142fb 2.28.4.7.4.052 OTU 1 seq prokMSA_id:038392 AF050538 WCHB1-27 2.28.4.7.4.053 OTU 1 seq prokMSA_id:039784 AF328200 clone KS62 2.28.4.7.4.054 OTU 1 seq prokMSA_id:041174 AB077350 delta clone:TYM--13 2.28.4.7.4.055 OTU 1 seq prokMSA_id:042332 AJ252641 Agricultural soil clone SC-I-55 2.28.4.7.4.056 OTU 1 seq prokMSA_id:044166 AF229785 TA12 2.28.4.7.4.057 OTU 1 seq prokMSA_id:071753 AF420354 isolate CS_B022 2.28.4.7.4.058 OTU 1 seq prokMSA_id:046898 AF229781 TA08 2.28.4.7.4.059 OTU 1 seq prokMSA_id:047124 AF229786 TA13 2.28.4.7.4.060 OTU 1 seq prokMSA_id:048147 AF234748 sludge H16 2.28.4.7.4.061 OTU 1 seq prokMSA_id:048265 AF145810 Metal-contaminated soil clone K20-06 2.28.4.7.4.062 OTU 1 seq prokMSA_id:048355 AY013609 Banisveld landfill BVA59 2.28.4.7.4.063 OTU 1 seq prokMSA_id:049070 AF234131 #0319-6G20 2.28.4.7.4.064 OTU 1 seq prokMSA_id:057449 AJ441236 delta clone P. palm A 229 2.28.4.7.4.065 OTU 1 seq prokMSA_id:050742 AF422646 clone d038F 2.28.4.7.4.066 OTU 1 seq prokMSA_id:051542 AJ301565 delta GR-296.I.93 2.28.4.7.4.067 OTU 1 seq prokMSA_id:059750 AY133446 clone OB3_122 2.28.4.7.4.068 OTU 1 seq prokMSA_id:060011 AB091329 clone:UI 2.28.4.7.4.069 OTU 1 seq prokMSA_id:060598 AF407700 clone G13 2.28.4.7.4.070 OTU 1 seq prokMSA_id:061837 AF529325 delta clone CLi130 2.28.4.7.4.071 OTU 1 seq prokMSA_id:062386 AF529129 delta clone FTLpost101 2.28.4.7.4.072 OTU 1 seq prokMSA_id:062391 AF529127 delta clone FTLM68 2.28.4.7.4.073 OTU 1 seq prokMSA_id:062393 AF529126 epsilon clone FTLM50 2.28.4.7.4.074 OTU 1 seq prokMSA_id:062404 AF529114 delta clone FTLM111 2.28.4.7.4.075 OTU 1 seq prokMSA_id:063254 AF523969 clone FW121 2.28.4.7.4.076 OTU 1 seq prokMSA_id:063255 AF523968 clone FW140 2.28.4.7.4.077 OTU 1 seq prokMSA_id:063259 AF523965 clone FW110 2.28.4.7.4.078 OTU 1 seq prokMSA_id:065006 AY095848 delta ARCT2-52 2.28.4.7.4.079 OTU 1 seq prokMSA_id:065485 AJ278162 delta SHD-127 2.28.4.7.4.080 OTU 1 seq prokMSA_id:065577 AY095386 yard-trimming-compost clone S-14 2.28.4.7.4.081 OTU 1 seq prokMSA_id:065641 AF507751 soil clone S1109 2.28.4.7.4.082 OTU 1 seq prokMSA_id:066103 AB074949 delta clone:KU12 2.28.4.7.4.083 OTU 1 seq prokMSA_id:067796 AF420341 isolate a2b027 2.28.4.7.4.084 OTU 1 seq prokMSA_id:067797 AF420340 isolate a2b040 2.28.4.7.4.085 OTU 1 seq prokMSA_id:070998 AF455065 clone B11 2.28.4.7.4.086 OTU 1 seq prokMSA_id:071269 AF229789 TA16 2.28.4.7.4.087 OTU 1 seq prokMSA_id:074078 AF354156 delta isolate Eel-TE1B1 2.28.4.7.4.088 OTU 1 seq prokMSA_id:074740 AJ289991 FukuN110 2.28.4.7.4.089 OTU 1 seq prokMSA_id:075593 AJ519630 delta clone Sh765B-TzT-29 2.28.4.7.4.090 OTU 1 seq prokMSA_id:075868 AF404348 Geobacter sp. strain NS1 2.28.4.7.4.091 OTU 1 seq prokMSA_id:075884 AJ518800 delta clone JG37-AG-128 2.28.4.7.4.092 OTU 1 seq prokMSA_id:076056 AJ518795 delta clone JG37-AG-90 2.28.4.7.4.093 OTU 1 seq prokMSA_id:076599 AJ534676 delta clone S15A-MN13 2.28.4.7.4.094 OTU 1 seq prokMSA_id:078341 AJ535250 delta clone Hyd89-66 2.28.4.7.4.095 OTU 1 seq prokMSA_id:079548 AF382143 clone ZA3735c 2.28.4.7.4.096 OTU 1 seq prokMSA_id:079712 AY192275 candidate division OP10 clone S1a-1H 2.28.4.7.4.097 OTU 1 seq prokMSA_id:080570 AB094903 clone:OHKB7.54 2.28.4.7.4.098 OTU 1 seq prokMSA_id:081373 AY218752 clone KD6-131 2.28.4.7.4.099 OTU 1 seq prokMSA_id:081438 AY214184 clone ZZ12C10 2.28.4.7.4.100 OTU 1 seq prokMSA_id:082426 AY214185 clone ZZ12C11 2.28.4.7.4.101 OTU 2 seqs prokMSA_id:083024 AY231326 clone ER2_1 prokMSA_id:083298 AY231342 clone ER2_17 2.28.4.7.4.102 OTU 1 seq prokMSA_id:083625 AJ495609 delta isolate SA-9 2.28.4.7.4.103 OTU 1 seq prokMSA_id:083714 AY221033 clone CCD19 2.28.4.7.4.104 OTU 1 seq prokMSA_id:084086 AY226218 delta clone ABBB-64 2.28.4.7.4.105 OTU 1 seq prokMSA_id:085050 AY231348 clone ER2_23 2.28.4.7.4.106 OTU 1 seq prokMSA_id:086364 AY274143 clone D137 2.28.4.7.4.107 OTU 4 seqs prokMSA_id:089444 AY297795 Delta pACH72 prokMSA_id:090570 AY297797 Delta pACH75 prokMSA_id:089287 AY297798 Delta pACH76 prokMSA_id:088322 AY297799 Delta pACH78 2.28.4.7.4.108 OTU 1 seq prokMSA_id:088772 AJ567571 delta clone MBMPE81 2.28.4.7.4.109 OTU 1 seq prokMSA_id:089577 AY297973 clone TA55_Ba_25 2.28.4.7.4.110 OTU 1 seq prokMSA_id:089845 AJ567605 clone MBAE59 2.28.4.7.4.111 OTU 1 seq prokMSA_id:090182 AY327191 clone ZB11 2.28.4.7.4.112 OTU 1 seq prokMSA_id:091335 AY340827 clone SR_FBR_E44 2.28.4.7.4.113 OTU 1 seq prokMSA_id:091525 AY344401 clone K60-8 2.28.4.7.4.114 OTU 1 seq prokMSA_id:092222 AJ581352 delta clone E01-9C-23 2.28.4.7.4.115 OTU 1 seq prokMSA_id:094615 AY373327 clone Dpcom133 2.28.4.7.4.116 OTU 1 seq prokMSA_id:095801 AY211657 delta clone GoM GC185 503E 2.28.4.7.4.117 OTU 1 seq prokMSA_id:097544 AY375085 clone B133 2.28.4.7.4.118 OTU 1 seq prokMSA_id:098535 AY375082 clone B109 2.28.4.7.4.999 poor quality 123 seqs prokMSA_id:030718 AB011324 clone: MUG32 prokMSA_id:047047 AF016736 soil clone S-21 prokMSA_id:040596 AF016740 soil clone S-27 prokMSA_id:010725 AF019928 Geobacter sp. str. Ala-5. prokMSA_id:010727 AF019932 Geobacter sp. str. JW-3. prokMSA_id:016333 AF019935 Geobacter sp. TC-4 prokMSA_id:072828 AF019937 Geobacter DGGE-I prokMSA_id:030356 AF019938 Geobacter DGGE-II clone II prokMSA_id:051300 AF019940 Geobacter DGGE-II clone IV prokMSA_id:034057 AF031409 Geobacteraceae gel band 2A prokMSA_id:032747 AF031410 Geobacteraceae gel band 8A prokMSA_id:017772 AF093600 Freshwater sediment clone ppD3rna prokMSA_id:051639 AF104271 Geo-48 prokMSA_id:034558 AF104272 Geo-58 prokMSA_id:071548 AF104273 Geo-60 prokMSA_id:038144 AF104274 Benz-76 prokMSA_id:073372 AF104276 Geo-83 prokMSA_id:028053 AF104283 Geo-125 prokMSA_id:041668 AF143766 delta clone K6A prokMSA_id:026517 AF145838 Metal-contaminated soil clone K20-43 prokMSA_id:030976 AF145839 Metal-contaminated soil clone K20-44 prokMSA_id:056553 AF175636 WJGRT-118 prokMSA_id:047199 AF223268 delta B2M47 prokMSA_id:034351 AF223279 delta B2M27 prokMSA_id:050522 AF226242 maize root Zmrc231 prokMSA_id:051552 AF234102 #0319-7O6 prokMSA_id:023437 AF296225 SY6-108 prokMSA_id:045572 AF316802 Crater Lake CL500-75 prokMSA_id:020986 AF332342 clone C26-23 prokMSA_id:016386 AF332352 clone C26-28 prokMSA_id:067936 AF365841 clone BT60PA10BE2 prokMSA_id:066589 AF400091 clone P1a4-20 prokMSA_id:024695 AF400094 P1a4-38 prokMSA_id:027415 AF400100 Tb3-J prokMSA_id:051500 AF400104 Tb3-AK prokMSA_id:046633 AF400105 Tb3-AM prokMSA_id:020493 AF400106 Tb3-BU prokMSA_id:016624 AF429021 clone CR99-35-63 prokMSA_id:018360 AF429198 clone CR99-2-12 prokMSA_id:074982 AF431388 delta clone C31.01SM prokMSA_id:075123 AF431389 delta clone C32.51SM prokMSA_id:075201 AF431390 delta clone S36.12SM prokMSA_id:076543 AF431391 delta clone S36.14SM prokMSA_id:074879 AF431392 delta clone S36.19SM prokMSA_id:075422 AF431393 delta clone S36.29SM prokMSA_id:076730 AF431394 delta clone S36.46SM prokMSA_id:076664 AF431395 delta clone S36.54SM prokMSA_id:076755 AF431396 delta clone S37.09SM prokMSA_id:077101 AF431397 delta clone C46.18PG prokMSA_id:076399 AF431399 delta clone C46.52PG prokMSA_id:076602 AF431400 delta clone C47.26PG prokMSA_id:074944 AF431401 delta clone S51.54PG prokMSA_id:076508 AF431403 delta clone S52.36PG prokMSA_id:076624 AF431404 delta clone S52.57PG prokMSA_id:061225 AF432676 clone NMS8.52WL prokMSA_id:075657 AF432702 clone N11.136WL prokMSA_id:076831 AF432710 clone N12.55WL prokMSA_id:077155 AF432767 clone C46.14PG prokMSA_id:076724 AF432800 clone C20.26WL prokMSA_id:041804 AF446272 eukaryote FL13E05 ; chloroplast chloroplast product prokMSA_id:025622 AF446292 delta FL07H01 prokMSA_id:025790 AF447133 clone TDC-418 prokMSA_id:065743 AF507635 soil clone C1181 prokMSA_id:066341 AF508198 clone CN MLS Band3 prokMSA_id:066340 AF508199 clone CN MLS Band4 prokMSA_id:062020 AF523336 clone P4-34 prokMSA_id:063332 AF523881 clone RCP1-55 prokMSA_id:058816 AF534260 delta clone delta da14 prokMSA_id:058815 AF534262 delta clone delta da16 prokMSA_id:059415 AF540850 clone DP11-16 prokMSA_id:070845 AF544946 delta clone 4-5 prokMSA_id:087992 AH010854 Geobacter sp. ENN1 and genes prokMSA_id:072569 AJ240011 delta strain DGGE band VIBAC-7 prokMSA_id:049438 AJ244326 Riz1027 prokMSA_id:032150 AJ244356 Riz1080 prokMSA_id:042469 AJ287631 delta 244ev prokMSA_id:018297 AJ296613 GR-296.II.5 clone GR-296.II.5 prokMSA_id:056296 AJ347053 clone TK90 prokMSA_id:027067 AJ421900 clone Alt9-K62 prokMSA_id:084129 AJ495621 delta isolate SA-22 prokMSA_id:057318 AJ518120 clone Mul01-35 prokMSA_id:071764 AJ518143 clone Mul01-91 prokMSA_id:057241 AJ518258 clone Mul2P2-74 prokMSA_id:057235 AJ518261 clone Mul2P2-8 prokMSA_id:057224 AJ518277 clone Mul2P3-21 prokMSA_id:057203 AJ518304 clone Mul2P3-86 prokMSA_id:055588 AJ518312 clone Neu2P1-12 prokMSA_id:057194 AJ518316 clone Neu2P1-29 prokMSA_id:056558 AJ518370 clone Neu4P1-38 prokMSA_id:057154 AJ518378 clone Neu4P1-54 prokMSA_id:056547 AJ518425 clone Neu4P3-27 prokMSA_id:057028 AJ518528 clone Qui2P3-47 prokMSA_id:056953 AJ518632 clone Sai1P1-54 prokMSA_id:056899 AJ518698 clone Sai4P1-81 prokMSA_id:052621 AY013653 Banisveld landfill BVB19b prokMSA_id:086927 AY034484 Geobacter sp. ENN1 prokMSA_id:087166 AY034485 Geobacter sp. ENN1 prokMSA_id:028182 AY038447 mesostigmatophycean clone CD3F1 ; chloroplast chloroplast product prokMSA_id:083326 AY092378 clone BF24 prokMSA_id:062254 AY123206 delta clone ca23 prokMSA_id:069293 AY143710 Geobacter sp. clone Lu63 prokMSA_id:069740 AY143741 Geobacter sp. clone V76 prokMSA_id:079853 AY193019 clone SRE13 prokMSA_id:080808 AY193046 clone LLB6 prokMSA_id:082829 AY217482 delta clone WCB22 prokMSA_id:083690 AY280651 delta clone G3-19 prokMSA_id:088637 AY311800 Dpcom102 prokMSA_id:089153 AY311817 Dpcom119 prokMSA_id:090725 AY323158 delta clone A115-28 prokMSA_id:091853 AY340844 isolate DGGE fragment SR_FBR_E2 prokMSA_id:093856 AY361940 clone P8-GEO-3 prokMSA_id:093677 AY363882 isolate DGGE band 10 prokMSA_id:095079 AY374738 delta clone PI_r100_c2 prokMSA_id:094700 AY374745 delta clone PI_r120_c2 prokMSA_id:094954 AY374759 delta clone PI_r173_c2 prokMSA_id:096575 AY391630 soil clone M14 prokMSA_id:010706 M80618 Desulfuromonas sp. prokMSA_id:010734 U28173 Geobacter "hydrogenophilus". prokMSA_id:010711 U46860 Geobacter "hydrogenophilus" str. strain H4. prokMSA_id:010712 U46861 Geobacter sp. str. TACP5. prokMSA_id:010713 U46862 Geobacter sp. str. TACP2. prokMSA_id:010716 U62841 clone RB18. prokMSA_id:010723 U68662 clone P33. 2.28.4.8 BDE.BACTERIOVORUS_GROUP 51 seqs 2.28.4.8.001 OTU 1 seq prokMSA_id:016939 AF263833 Bdellovibrio strain SRA9 2.28.4.8.003 OTU 2 seqs prokMSA_id:049295 AF148938 Bdellovibrio strain BEP2 prokMSA_id:030112 AF148939 Bdellovibrio strain BRP4 2.28.4.8.006 OTU 1 seq prokMSA_id:038566 AJ292518 Bdellovibrio sp. W strain ATCC 27047 2.28.4.8.008 OTU 18 seqs prokMSA_id:040880 AF084850 Bdellovibrio strain 100 prokMSA_id:044877 AF084851 Bdellovibrio strain E prokMSA_id:038436 AF263832 Bdellovibrio strain SRE7 prokMSA_id:039664 AJ278145 Bdellovibrio strain DSM 50705 prokMSA_id:040800 AJ292759 Bdellovibrio strain HD 100 DSM 50701 prokMSA_id:024625 AJ292760 Bdellovibrio strain HD 127 DSM 50708 prokMSA_id:067176 AY094106 Bdellovibrio sp. 6-5-S prokMSA_id:067170 AY094107 Bdellovibrio sp. albina1 prokMSA_id:067164 AY094109 Bdellovibrio sp. ARL-12 prokMSA_id:067162 AY094114 Bdellovibrio sp. Hefner prokMSA_id:067151 AY094121 Bdellovibrio sp. P prokMSA_id:067153 AY094122 Bdellovibrio sp. Tu-113 prokMSA_id:067150 AY094123 Bdellovibrio sp. Vietnam prokMSA_id:067155 AY094124 Bdellovibrio prokMSA_id:067152 AY094125 Bdellovibrio prokMSA_id:067149 AY094126 Bdellovibrio prokMSA_id:067148 AY094127 Bdellovibrio prokMSA_id:067144 AY094129 Bdellovibrio 2.28.4.8.009 OTU 1 seq prokMSA_id:060869 AY135905 clone SG2-41 2.28.4.8.010 OTU 1 seq prokMSA_id:067157 AY094118 Bdellovibrio sp. NASA 2.28.4.8.011 OTU 1 seq prokMSA_id:067160 AY094116 Bdellovibrio sp. Lanham 2.28.4.8.012 OTU 1 seq prokMSA_id:074869 AF148941 Bdellovibrio strain TRA2 2.28.4.8.013 OTU 1 seq prokMSA_id:078428 AY177783 isolate Ox08 2.28.4.8.014 OTU 1 seq prokMSA_id:097116 AY424828 clone mv13.7 2.28.4.8.015 OTU 1 seq prokMSA_id:097928 AY424822 clone mv13.13 2.28.4.8.999 poor quality 22 seqs prokMSA_id:032076 AF128654 soil S076 prokMSA_id:034526 AF314449 PHOS-HE81 prokMSA_id:049425 AF314450 PHOS-HC31 prokMSA_id:039123 AF332269 clone C12-11 prokMSA_id:052657 AF332271 clone C12-5 prokMSA_id:034832 AF358006 clone LO13.14 prokMSA_id:038707 AF388327 clone Ac2 prokMSA_id:039662 AJ225343 gamma species ; clone 64 prokMSA_id:056891 AJ518711 clone Sai4P3-21 prokMSA_id:086877 AY293430 delta clone FL02A06 prokMSA_id:010745 M59297 Bdellovibrio str. 109J ATCC 43826. prokMSA_id:010740 M61230 Bdellovibrio str. 114 ATCC 15632. prokMSA_id:010742 M61232 Bdellovibrio str. H-I 0x9-2 ATCC 25630. prokMSA_id:010743 M61233 Bdellovibrio str. H-I 0x9-3 ATCC 25631. prokMSA_id:010737 M61234 Bdellovibrio str. 109J. prokMSA_id:010736 M61235 Bdellovibrio str. 109D. prokMSA_id:010739 M61236 Bdellovibrio str. 109 ATCC 15143. prokMSA_id:010741 M61237 Bdellovibrio str. 6-5-S. prokMSA_id:010738 M61238 Bdellovibrio sp. str. W ATCC 27047. prokMSA_id:010744 M61241 Bdellovibrio str. HD 100 ATCC 15356 . prokMSA_id:010746 U68668 clone P41. prokMSA_id:010747 X84539 str. SBR1113. 2.28.4.9 ENVIRONMENTAL_CLONE_A38T_GROUP 2 seqs 2.28.4.9.999 poor quality 2 seqs prokMSA_id:010748 X91461 clone A38t. prokMSA_id:010749 X91471 clone A48u. 2.28.4.10 DESULFOBULBUS_ASSEMBLAGE 215 seqs 2.28.4.10.001 OTU 1 seq prokMSA_id:010782 AF142828 clone BURTON-8. 2.28.4.10.002 OTU 1 seq prokMSA_id:010781 AF050537 clone WFeA1-10. 2.28.4.10.003 OTU 1 seq prokMSA_id:010779 AF026993 clone OPB55. 2.28.4.10.004 OTU 1 seq prokMSA_id:010777 AF159685 clone HstpL68. 2.28.4.10.005 OTU 1 seq prokMSA_id:010778 AF050624 clone WsCH54. 2.28.4.10.006 OTU 1 seq prokMSA_id:010776 AF002671 Desulfobacca acetoxidans str. ASRB2. 2.28.4.10.007 OTU 1 seq prokMSA_id:010775 U85477 Desulfoarculus BG74 str. BG74. 2.28.4.10.008 OTU 1 seq prokMSA_id:010772 AF027000 clone OPT56. 2.28.4.10.009 OTU 1 seq prokMSA_id:010771 AF026998 clone OPB16. 2.28.4.10.010 OTU 1 seq prokMSA_id:010770 AF026997 clone OPT47. 2.28.4.10.011 OTU 6 seqs prokMSA_id:010763 AF026987 clone OPB33. prokMSA_id:010764 AF026988 clone OPB8. prokMSA_id:010765 AF026989 clone OPB78. prokMSA_id:010766 AF026990 clone OPS27. prokMSA_id:010767 AF026991 clone OPS105. prokMSA_id:010768 AF026992 clone OPT77. 2.28.4.10.012 OTU 1 seq prokMSA_id:010762 U25627 Thermodesulforhabdus norvegicus str. A8444. 2.28.4.10.013 OTU 3 seqs prokMSA_id:010761 AJ012597 unnamed organism. prokMSA_id:066926 AJ306772 clone SHA-50 prokMSA_id:010760 U49429 str. PRTOL1. 2.28.4.10.014 OTU 2 seqs prokMSA_id:091896 AY340832 clone SR_FBR_E98 prokMSA_id:010759 X83274 Desulforhabdus amnigenus str. ASRB1. 2.28.4.10.015 OTU 1 seq prokMSA_id:010756 AJ241015 clone Sva0812b. 2.28.4.10.016 OTU 1 seq prokMSA_id:010755 X94911 Syntrophobacter sp. 2.28.4.10.017 OTU 1 seq prokMSA_id:010754 AJ237605 Syntrophobacter sp. str. TsuA1. 2.28.4.10.018 OTU 1 seq prokMSA_id:010753 AJ009502 clone SJA-172. 2.28.4.10.019 OTU 2 seqs prokMSA_id:066923 AJ306777 clone SHA-237 prokMSA_id:010752 X82874 Syntrophobacter fumaroxidans str. MPOB DSM 10017 . 2.28.4.10.020 OTU 1 seq prokMSA_id:010751 X70906 Syntrophobacter wolinii. 2.28.4.10.021 OTU 1 seq prokMSA_id:010750 X70905 Syntrophobacter wolinii. 2.28.4.10.022 OTU 1 seq prokMSA_id:016334 AF194206 delta n30r 2.28.4.10.023 OTU 1 seq prokMSA_id:019062 AJ012598 sulfate-reducing EZ-2C2 2.28.4.10.024 OTU 1 seq prokMSA_id:055539 AY083024 delta clone SLM-DSBAC-74 2.28.4.10.025 OTU 2 seqs prokMSA_id:055923 AF432607 clone NOS7.157WL prokMSA_id:082212 AY218695 clone KD8-84 2.28.4.10.026 OTU 1 seq prokMSA_id:021360 AJ310385 strain NS0205 2.28.4.10.027 OTU 1 seq prokMSA_id:022050 AJ300511 sulphate reducing DSB-DSa99-5 2.28.4.10.028 OTU 5 seqs prokMSA_id:023179 AJ316020 Desulfomonile sp. clone 618 prokMSA_id:042269 AJ316021 Desulfomonile sp. clone 624 prokMSA_id:070622 AJ316022 Desulfomonile sp. clone 626 prokMSA_id:039526 AJ316023 Desulfomonile sp. clone 650 prokMSA_id:025091 AJ316024 Desulfomonile sp. clone 651 2.28.4.10.029 OTU 1 seq prokMSA_id:025647 AF419676 a2b002 2.28.4.10.030 OTU 1 seq prokMSA_id:026785 AF254400 UASB_TL19 complete 2.28.4.10.031 OTU 1 seq prokMSA_id:028363 AY050579 clone GOUTA7 2.28.4.10.032 OTU 1 seq prokMSA_id:028552 AF385080 Desulfacinum subterraneum 2.28.4.10.033 OTU 2 seqs prokMSA_id:036808 AF230531 Desulfomonile limimaris prokMSA_id:030060 AF282177 Desulfomonile limimaris 2.28.4.10.034 OTU 1 seq prokMSA_id:030579 AF194201 delta n2d 2.28.4.10.035 OTU 1 seq prokMSA_id:031004 AF282178 Btol 2.28.4.10.036 OTU 1 seq prokMSA_id:031924 AF225447 BA71 2.28.4.10.037 OTU 1 seq prokMSA_id:033846 AJ300515 sulphate reducing DSB-DSa99-9 2.28.4.10.038 OTU 1 seq prokMSA_id:033960 AJ300513 sulphate reducing DSB-DSa99-7 2.28.4.10.039 OTU 1 seq prokMSA_id:036463 AF254397 UASB_TL11 complete 2.28.4.10.040 OTU 1 seq prokMSA_id:036567 AF328207 clone KS70 2.28.4.10.041 OTU 1 seq prokMSA_id:068889 AJ408248 equine intestinal sp. PW02 clone PW02 2.28.4.10.042 OTU 1 seq prokMSA_id:036814 AF170420 Thermodesulforhabdus sp. nov. M40/2 CIV-3.2 2.28.4.10.043 OTU 1 seq prokMSA_id:038917 AF419675 a1b020 2.28.4.10.044 OTU 1 seq prokMSA_id:041839 AJ006619 Sulfate-reducing strain STP34 2.28.4.10.045 OTU 1 seq prokMSA_id:041940 AF402972 Thermus sp. clone 2.28.4.10.046 OTU 1 seq prokMSA_id:041991 AF364913 clone clB74 2.28.4.10.047 OTU 1 seq prokMSA_id:042281 AF351231 Nitrospira sp. clone 4-29 2.28.4.10.048 OTU 1 seq prokMSA_id:042456 AF364915 clone clB10 2.28.4.10.049 OTU 1 seq prokMSA_id:042862 AF424433 MERTZ_2CM_79 2.28.4.10.050 OTU 1 seq prokMSA_id:045274 AJ390469 soil PBS-74 2.28.4.10.051 OTU 1 seq prokMSA_id:046615 AF424207 delta MERTZ_2CM_142 2.28.4.10.052 OTU 1 seq prokMSA_id:048894 AJ300514 sulphate reducing DSB-DSa99-8 2.28.4.10.053 OTU 1 seq prokMSA_id:050160 AF424180 delta MERTZ_2CM_7 2.28.4.10.054 OTU 1 seq prokMSA_id:051575 AF424209 delta MERTZ_2CM_165 2.28.4.10.055 OTU 6 seqs prokMSA_id:059873 AB077456 sulfate-reducing clone:oil-1 prokMSA_id:059871 AB077457 sulfate-reducing clone:oil-2 prokMSA_id:059867 AB077461 sulfate-reducing clone:oil-8 prokMSA_id:059863 AB077464 sulfate-reducing clone:oil-11 prokMSA_id:059860 AB077465 sulfate-reducing clone:oil-12 prokMSA_id:055267 AB077468 sulfate-reducing clone:oil-15 2.28.4.10.056 OTU 1 seq prokMSA_id:053806 AF254406 UASB_TL15 complete 2.28.4.10.057 OTU 1 seq prokMSA_id:059752 AY133444 clone BB2_3 2.28.4.10.058 OTU 1 seq prokMSA_id:059898 AY133092 delta clone ccslm247 2.28.4.10.059 OTU 1 seq prokMSA_id:060592 AF407707 clone G55 2.28.4.10.060 OTU 1 seq prokMSA_id:063250 AF523973 clone FW13 2.28.4.10.061 OTU 1 seq prokMSA_id:063260 AF523960 clone FW57 2.28.4.10.062 OTU 1 seq prokMSA_id:063265 AF523958 clone FW133 2.28.4.10.063 OTU 1 seq prokMSA_id:063331 AF523883 clone RCP1-85 2.28.4.10.064 OTU 1 seq prokMSA_id:064947 AY095652 Planctomycetales OS3.5K-48 2.28.4.10.065 OTU 1 seq prokMSA_id:065714 AF507669 soil clone C1173 2.28.4.10.066 OTU 1 seq prokMSA_id:066902 AJ306805 clone SHD-1 2.28.4.10.067 OTU 1 seq prokMSA_id:066924 AJ306776 clone SHA-117 2.28.4.10.068 OTU 1 seq prokMSA_id:067043 AF499431 clone BL-4 2.28.4.10.069 OTU 1 seq prokMSA_id:067799 AF420338 isolate a2b025 2.28.4.10.070 OTU 2 seqs prokMSA_id:070282 AF170417 Desulfacinum hydrothermale prokMSA_id:073225 AF170418 Desulfacinum sp. M40/2 CIV-2.3 2.28.4.10.071 OTU 1 seq prokMSA_id:071864 AF418174 Desulfoarculus baarsii DSM 2075 2.28.4.10.072 OTU 1 seq prokMSA_id:072127 AF364914 clone clB52 2.28.4.10.073 OTU 1 seq prokMSA_id:072386 AJ300516 sulphate reducing DSB-DSa99-10 2.28.4.10.074 OTU 1 seq prokMSA_id:074022 AF419677 a2b033 2.28.4.10.075 OTU 2 seqs prokMSA_id:076564 AY164361 clone ALIB-90 prokMSA_id:074907 AY164373 clone BLIB-36 2.28.4.10.076 OTU 1 seq prokMSA_id:075007 AY164431 clone ULIB-15 2.28.4.10.077 OTU 2 seqs prokMSA_id:075161 AY150890 clone GR6 prokMSA_id:075882 AY150895 candidate division OP8 clone GR11 2.28.4.10.078 OTU 1 seq prokMSA_id:075569 AJ534628 clone JG36-TzT-55 2.28.4.10.079 OTU 1 seq prokMSA_id:075635 AY164345 clone ALIB-36 2.28.4.10.080 OTU 1 seq prokMSA_id:076036 AJ518798 delta clone JG37-AG-113 2.28.4.10.081 OTU 1 seq prokMSA_id:076967 AJ519621 clone Sh765B-TzT-26 2.28.4.10.082 OTU 1 seq prokMSA_id:076988 AY164434 clone ULIB-29 2.28.4.10.083 OTU 1 seq prokMSA_id:077256 AJ519670 clone GuBH2-AG-71 2.28.4.10.084 OTU 1 seq prokMSA_id:077292 AF482435 clone R1p32 2.28.4.10.085 OTU 1 seq prokMSA_id:077303 AF524857 K-4b1 2.28.4.10.086 OTU 1 seq prokMSA_id:077318 AF482439 clone R3p4 2.28.4.10.087 OTU 1 seq prokMSA_id:078371 AY171386 clone s104 2.28.4.10.088 OTU 1 seq prokMSA_id:081230 AY214199 clone ZZ14AC14 2.28.4.10.089 OTU 1 seq prokMSA_id:082875 AY217483 delta clone WCB5 2.28.4.10.090 OTU 1 seq prokMSA_id:085071 AY228693 clone SSE1 2.28.4.10.091 OTU 1 seq prokMSA_id:086638 AY280661 delta clone G4-8 2.28.4.10.092 OTU 1 seq prokMSA_id:088903 AY327183 clone ZB7 2.28.4.10.093 OTU 1 seq prokMSA_id:091053 AY340830 clone SR_FBR_E86 2.28.4.10.094 OTU 1 seq prokMSA_id:091234 AY344398 clone L11-32 2.28.4.10.095 OTU 1 seq prokMSA_id:091433 AY344410 clone K2-30-2 2.28.4.10.096 OTU 1 seq prokMSA_id:091627 AY340836 clone SR_FBR_L13 2.28.4.10.097 OTU 1 seq prokMSA_id:093078 AY354164 clone pIR3BC04 2.28.4.10.098 OTU 1 seq prokMSA_id:095487 AY375087 clone C10 2.28.4.10.099 OTU 1 seq prokMSA_id:096634 AY375095 clone C52 2.28.4.10.100 OTU 1 seq prokMSA_id:097823 AY375063 clone B93 2.28.4.10.999 poor quality 92 seqs prokMSA_id:044815 AB011320 clone: MUG28 prokMSA_id:032919 AB079465 clone:TOYO-4-B prokMSA_id:036049 AB079472 clone:TOYO-11-Am prokMSA_id:033399 AB079473 clone:TOYO-12-Bm prokMSA_id:021267 AF009997 prokMSA_id:019530 AF016532 HRS-19 prokMSA_id:010769 AF026996 clone OPT23. prokMSA_id:054281 AF104268 Geo-3 prokMSA_id:051685 AF128704 soil S0189 prokMSA_id:072451 AF208999 vent ML-4a prokMSA_id:051791 AF209000 vent ML-4b prokMSA_id:070366 AF209016 vent ML-19 prokMSA_id:032419 AF223265 delta B2M37 prokMSA_id:037550 AF223272 delta B2M6 prokMSA_id:072009 AF254395 UASB_TL44 complete prokMSA_id:025632 AF321210 delta wpd_24 prokMSA_id:034785 AF332277 clone C12-20 prokMSA_id:036411 AF332278 clone C12-12 prokMSA_id:023273 AF332289 clone T26-20 prokMSA_id:017939 AF332290 clone T26-26 prokMSA_id:054711 AF332349 clone C26-9 prokMSA_id:018586 AF364921 clone clI74 prokMSA_id:074574 AF364923 clone clI34 prokMSA_id:072332 AF364929 clone clI04 prokMSA_id:050738 AF364930 clone clI03 prokMSA_id:068025 AF365727 clone BT60DS4BA7 prokMSA_id:044600 AF395427 Eub No. 7 prokMSA_id:077026 AF432714 clone C17.37WL prokMSA_id:076389 AF432738 clone N26.135SM prokMSA_id:076506 AF432781 clone S52.49PG prokMSA_id:076698 AF432782 clone N11.02WL prokMSA_id:023236 AF446293 delta FL02E02 prokMSA_id:032615 AF473943 delta 128-95 prokMSA_id:067133 AF499313 clone JCL4-29 prokMSA_id:067135 AF499317 clone JCL4-72 prokMSA_id:067136 AF499318 clone JCL4-108 prokMSA_id:067112 AF499342 clone JCL4-58 prokMSA_id:055341 AF499344 clone JCL9-73 prokMSA_id:067076 AF499388 clone JCL1-32 prokMSA_id:067050 AF499420 clone BL-77 prokMSA_id:065802 AF507531 soil clone S0136 prokMSA_id:065789 AF507550 soil clone S0223 prokMSA_id:056385 AF507723 soil clone S131 prokMSA_id:065663 AF507726 soil clone S134 prokMSA_id:059295 AF529224 Syntrophobacter sp. ECP-C3 prokMSA_id:061136 AF530124 isolate MGP DGGE Band 24B prokMSA_id:034368 AJ232822 clone LBS6 prokMSA_id:070774 AJ296610 GR-WP54-9 clone GR-WP54-9 prokMSA_id:028193 AJ296615 GR-296.II.3 clone GR-296.II.3 prokMSA_id:068972 AJ297613 clone C44K1 prokMSA_id:044137 AJ300512 sulphate reducing DSB-DSa99-6 prokMSA_id:021712 AJ421217 clone C5-K3 prokMSA_id:078158 AJ459904 Desulfovibrionaceae clone BMD 1 E1 prokMSA_id:056210 AJ518164 clone Mul1-89 prokMSA_id:057295 AJ518181 clone Mul1P3-91 prokMSA_id:057268 AJ518219 clone Mul2P1-95 prokMSA_id:057190 AJ518322 clone Neu2P1-5 prokMSA_id:057050 AJ518500 clone Qui2P2-19 prokMSA_id:056918 AJ518673 clone Sai4P1-26 prokMSA_id:056886 AJ518713 clone Sai4P3-24 prokMSA_id:024537 AY037603 soil clone S078 prokMSA_id:085802 AY092376 clone BF45 prokMSA_id:055804 AY095415 yard-trimming-compost clone S-48 prokMSA_id:069744 AY143719 Desuflacinum sp. clone P12 prokMSA_id:072823 AY145675 delta FL11A03 prokMSA_id:069224 AY145678 delta FL11C02 prokMSA_id:075358 AY157097 delta isolate WB-25 prokMSA_id:077066 AY164364 clone BLIB-113 prokMSA_id:080171 AY193083 clone OBPB81 prokMSA_id:081026 AY193088 clone OBPB95 prokMSA_id:080061 AY193091 clone OBPB29 prokMSA_id:084975 AY197420 clone B04R022 prokMSA_id:085660 AY217485 delta clone WCB41 prokMSA_id:086589 AY221068 clone CCM7a prokMSA_id:086514 AY280654 delta clone G3-7 prokMSA_id:089983 AY323156 delta clone A115-16 prokMSA_id:089359 AY327192 clone ZB10 prokMSA_id:091247 AY340845 isolate DGGE fragment SR_FBR_E3 prokMSA_id:094407 AY374664 delta clone PI_6O55 prokMSA_id:094933 AY374701 delta clone PI_6AG03 prokMSA_id:094998 AY374708 delta clone PI_6BH01 prokMSA_id:096563 AY395143 clone D26ST prokMSA_id:010757 D26198 soil from paddy field clone PAD11. prokMSA_id:010773 L27426 Desulfacinum infernum str. BalphaG1 ACM 3991 . prokMSA_id:010780 M26635 Desulfomonile tiedjei str. DCB-1 ATCC 49306 . prokMSA_id:010774 M34403 Desulfovibrio baarsii str. 2st14 Konstanz DSM 2075 . prokMSA_id:032107 U81643 clone vadinBA15 prokMSA_id:050015 U81731 clone vadinHA84 prokMSA_id:010758 X82875 Syntrophobacter pfennigii str. KOPROP1 DSM 10092 . prokMSA_id:010785 X84588 unnamed organism. prokMSA_id:010784 X91279 clone G27. prokMSA_id:010783 X91475 clone A52p. 2.28.4.11 DBB.PROPIONICUS_ASSEMBLAGE 382 seqs 2.28.4.11.001 OTU 1 seq prokMSA_id:010840 AJ007373 str. WH26. 2.28.4.11.002 OTU 1 seq prokMSA_id:010839 X99707 Desulfofustis glycolicus str. PerGlyS. 2.28.4.11.003 OTU 1 seq prokMSA_id:010837 AJ241011 clone Sva0631. 2.28.4.11.004 OTU 8 seqs prokMSA_id:010833 AB015515 str. BD1-2. prokMSA_id:079716 AB094859 clone:OHKB4.91 prokMSA_id:026359 AF424197 delta MERTZ_2CM_82 prokMSA_id:023963 AF424202 delta MERTZ_2CM_123 prokMSA_id:016779 AF424208 delta MERTZ_2CM_153 prokMSA_id:010790 AJ240966 clone Sva1035. prokMSA_id:010836 AJ240978 clone Sva0103. prokMSA_id:010791 AJ240984 clone Sva1041. 2.28.4.11.005 OTU 1 seq prokMSA_id:010834 AB013265 str. NKB13. 2.28.4.11.006 OTU 1 seq prokMSA_id:010832 U65915 clone Sar276. 2.28.4.11.007 OTU 1 seq prokMSA_id:010831 AF099055 str. LSv55. 2.28.4.11.008 OTU 2 seqs prokMSA_id:087670 AB110550 Desulfobulbaceae Pro16 prokMSA_id:010830 U85473 Desulfobulbus BG25 str. BG25. 2.28.4.11.009 OTU 1 seq prokMSA_id:010829 U12253 Desulfobulbus rhabdoformis str. M16 DSM 8777 . 2.28.4.11.010 OTU 9 seqs prokMSA_id:010821 AB015241 str. JTB20. prokMSA_id:010815 AF099058 str. LSv53. prokMSA_id:010816 AF099059 str. LSv23. prokMSA_id:010817 AF099060 str. LSv24. prokMSA_id:010828 AJ241014 str. LSv53. prokMSA_id:059727 AY133465 clone BB2_154 prokMSA_id:078896 AY177797 Desulforhopalus sp. clone SB1_78 prokMSA_id:078959 AY177802 Desulforhopalus sp. clone SB4_58 prokMSA_id:087862 AY279042 clone CS002 2.28.4.11.011 OTU 1 seq prokMSA_id:010827 AJ241013 clone Sva0999. 2.28.4.11.012 OTU 2 seqs prokMSA_id:010822 AJ240982 clone Sva0113. prokMSA_id:010826 AJ240995 clone Sva0754. 2.28.4.11.013 OTU 1 seq prokMSA_id:010825 AJ240994 clone Sva0443. 2.28.4.11.017 OTU 1 seq prokMSA_id:010819 AF099062 str. LSv54. 2.28.4.11.018 OTU 1 seq prokMSA_id:010818 AF099061 str. LSv514. 2.28.4.11.019 OTU 3 seqs prokMSA_id:010814 AF099057 Desulforhopalus LSv20 str. LSv20. prokMSA_id:010809 L42613 Desulforhopalus vacuolatus str. ltk10. prokMSA_id:072238 L42613 Desulforhopalus vacuolatus 2.28.4.11.020 OTU 1 seq prokMSA_id:010811 AJ237602 Desulfobacterium catecholicum DSM 3882. 2.28.4.11.021 OTU 1 seq prokMSA_id:010810 AF118453 Desulforhopalus singaporensis str. S'pore T1. 2.28.4.11.022 OTU 9 seqs prokMSA_id:010797 AJ389623 clone 113. prokMSA_id:010799 AJ389625 clone 167. prokMSA_id:010800 AJ389626 clone 282. prokMSA_id:010801 AJ389627 clone 330. prokMSA_id:010802 AJ389628 clone 348. prokMSA_id:010803 AJ389629 clone 368. prokMSA_id:069671 AJ511275 Desulfocapsa sp. Cad626 prokMSA_id:090670 AY327185 clone ZB1 prokMSA_id:010792 X95181 Desulfocapsa thiozymogenes str. Bra2 DSM 7269 . 2.28.4.11.023 OTU 3 seqs prokMSA_id:040598 AJ307943 mRNA clone sipK93 prokMSA_id:010796 AJ389622 clone 22. prokMSA_id:010798 AJ389624 clone 141. 2.28.4.11.024 OTU 1 seq prokMSA_id:010795 AF154090 clone BPC005. 2.28.4.11.025 OTU 1 seq prokMSA_id:010794 Y13672 Desulfocapsa sulfoexigens str. SB164P1. 2.28.4.11.026 OTU 2 seqs prokMSA_id:010793 AF050536 clone WCHB1-67. prokMSA_id:037452 AF276449 clone RFLP 10E 2.28.4.11.027 OTU 3 seqs prokMSA_id:023871 AB062616 sulfate-reducing clone:DBB18 prokMSA_id:030740 AB069773 sulfate-reducing clone:10B prokMSA_id:010788 AJ012591 unnamed organism. 2.28.4.11.028 OTU 2 seqs prokMSA_id:077552 AF482433 clone R1p15 prokMSA_id:010787 X95180 Desulfobulbus elongatus str. FP DSM 2908 . 2.28.4.11.030 OTU 1 seq prokMSA_id:016622 AF424403 Nitrospira group MERTZ_2CM_68 2.28.4.11.031 OTU 3 seqs prokMSA_id:062385 AF529133 delta clone FTLpost26 prokMSA_id:019356 AY050586 clone GOUTA17 prokMSA_id:059934 AY133065 clone ccs202 2.28.4.11.032 OTU 1 seq prokMSA_id:020677 AF424198 delta MERTZ_2CM_83 2.28.4.11.033 OTU 2 seqs prokMSA_id:056189 AY133463 clone BB2_127 prokMSA_id:078710 AY177794 Desulfocapsa sp. clone SB1_17 2.28.4.11.034 OTU 1 seq prokMSA_id:021964 AF424227 delta MERTZ_2CM_340 2.28.4.11.035 OTU 1 seq prokMSA_id:022073 AF132867 Desulfobulbus sp. 'Ace 16m' 2.28.4.11.036 OTU 1 seq prokMSA_id:022836 AJ307944 mRNA clone sipK108 2.28.4.11.037 OTU 1 seq prokMSA_id:024902 AF224819 clone Car93rb 2.28.4.11.038 OTU 1 seq prokMSA_id:025456 AF424405 Nitrospira group MERTZ_2CM_332 2.28.4.11.039 OTU 1 seq prokMSA_id:026125 AF469372 clone 33-PA52B00 2.28.4.11.040 OTU 1 seq prokMSA_id:026233 AF424263 delta MERTZ_21CM_386 2.28.4.11.041 OTU 1 seq prokMSA_id:026850 AF424257 delta MERTZ_21CM_299 2.28.4.11.042 OTU 1 seq prokMSA_id:033594 AF286036 Saltmarsh clone LCP-67 2.28.4.11.043 OTU 2 seqs prokMSA_id:067724 AB062164 clone:pBSB5.28 prokMSA_id:058517 AB072707 clone:pHAuB-5 2.28.4.11.044 OTU 1 seq prokMSA_id:034365 AF364912 clone clB15 2.28.4.11.045 OTU 1 seq prokMSA_id:034546 AJ347761 clone ST-3K10 2.28.4.11.046 OTU 1 seq prokMSA_id:034639 AF424189 delta MERTZ_2CM_46 2.28.4.11.047 OTU 1 seq prokMSA_id:036428 AF211275 delta MT28 2.28.4.11.048 OTU 1 seq prokMSA_id:037642 AF333549 clone R165 2.28.4.11.049 OTU 1 seq prokMSA_id:039590 AB022619 delta SA82 2.28.4.11.050 OTU 2 seqs prokMSA_id:047698 AY005036 Desulfobulbus sp. oral clone CH031 prokMSA_id:041043 AY005037 Desulfobulbus sp. oral clone R004 2.28.4.11.051 OTU 1 seq prokMSA_id:041846 AF132865 Desulfobulbus sp. 'Clear 54m' 2.28.4.11.052 OTU 1 seq prokMSA_id:042347 AF132868 Desulfobulbus sp. 'McCal 25m' 2.28.4.11.053 OTU 2 seqs prokMSA_id:043496 AB031598 delta TIHP302-12 prokMSA_id:080324 AY193139 clone Bol88 2.28.4.11.054 OTU 1 seq prokMSA_id:044052 AJ296571 GR-Sh2-18 clone GR-Sh2-18 2.28.4.11.055 OTU 1 seq prokMSA_id:044544 AF424324 MERTZ_21CM_279 2.28.4.11.056 OTU 1 seq prokMSA_id:044862 AF121089 ODPB-B4 2.28.4.11.057 OTU 1 seq prokMSA_id:045253 AF211270 delta MT67 2.28.4.11.058 OTU 1 seq prokMSA_id:046630 AB069774 sulfate-reducing clone:39B 2.28.4.11.059 OTU 1 seq prokMSA_id:047136 AF424206 delta MERTZ_2CM_141 2.28.4.11.060 OTU 1 seq prokMSA_id:047606 AF424221 delta MERTZ_2CM_260 2.28.4.11.061 OTU 1 seq prokMSA_id:050367 AB069772 sulfate-reducing clone:8B 2.28.4.11.062 OTU 1 seq prokMSA_id:052628 AF354161 delta isolate SB-24e1B4 2.28.4.11.063 OTU 4 seqs prokMSA_id:071121 AF354149 delta isolate Eel-BE1A3 prokMSA_id:077835 AJ535233 delta clone Hyd89-19 prokMSA_id:077896 AJ535254 delta clone Hyd89-52 prokMSA_id:096542 AY211680 delta clone GoM GC234 621E 2.28.4.11.064 OTU 1 seq prokMSA_id:059746 AY133450 clone BB2_128 2.28.4.11.065 OTU 1 seq prokMSA_id:059749 AY133449 clone BB2_136 2.28.4.11.066 OTU 3 seqs prokMSA_id:061882 AF449227 delta clone R103-B54 prokMSA_id:061881 AF449228 delta clone R103-B27 prokMSA_id:061880 AF449229 delta clone R103-B13 2.28.4.11.067 OTU 1 seq prokMSA_id:061884 AF449226 delta clone R103-B53 2.28.4.11.068 OTU 3 seqs prokMSA_id:076328 AF458284 delta ML320J-23 prokMSA_id:075754 AF458285 delta ML320J-28 prokMSA_id:062717 AF507840 delta clone ML623J-57 2.28.4.11.069 OTU 1 seq prokMSA_id:063572 AB069799 clone:CS5.24 2.28.4.11.070 OTU 1 seq prokMSA_id:063581 AB069791 clone:CS5.5 2.28.4.11.071 OTU 1 seq prokMSA_id:063781 AY114324 Verrucomicrobia clone LD1-PA38 2.28.4.11.072 OTU 1 seq prokMSA_id:067726 AB062161 clone:pBSB4.23 2.28.4.11.073 OTU 1 seq prokMSA_id:067727 AB062162 clone:pBSB4.35 2.28.4.11.074 OTU 1 seq prokMSA_id:067730 AB062157 clone:pBSB4.5 2.28.4.11.075 OTU 1 seq prokMSA_id:067731 AB062155 clone:pBSB3.15 2.28.4.11.076 OTU 1 seq prokMSA_id:067800 AF420337 isolate a1b003 2.28.4.11.077 OTU 1 seq prokMSA_id:067802 AF420336 isolate a1b012 2.28.4.11.078 OTU 1 seq prokMSA_id:068871 AF328208 clone KS71 2.28.4.11.079 OTU 1 seq prokMSA_id:069906 AB069784 clone:CS2.7 2.28.4.11.080 OTU 1 seq prokMSA_id:069919 AF420334 isolate a1b009 2.28.4.11.081 OTU 1 seq prokMSA_id:070322 AF200962 Psychrophilic sulfate-reducing LSv22 2.28.4.11.082 OTU 1 seq prokMSA_id:071031 AF420335 isolate a2b016 2.28.4.11.084 OTU 16 seqs prokMSA_id:010820 AB015588 str. BD7-15. prokMSA_id:079377 AB100004 sequences clone: IndB2-42 prokMSA_id:071200 AF354148 delta isolate Eel-TE1B5 prokMSA_id:073580 AF420365 isolate C1_B029 prokMSA_id:067777 AF420366 isolate C1_B030 prokMSA_id:073292 AF420368 isolate C1_B040 prokMSA_id:016385 AF424234 delta MERTZ_0CM_165 prokMSA_id:048760 AF424240 delta MERTZ_21CM_71 prokMSA_id:010823 AJ240990 clone Sva1036. prokMSA_id:010824 AJ240992 clone Sva1037. prokMSA_id:078284 AJ535218 delta clone Hyd01-17 prokMSA_id:077788 AJ535230 delta clone Hyd01-07 prokMSA_id:078398 AJ535241 delta clone Hyd24-11 prokMSA_id:077746 AJ535242 delta clone Hyd01-30 prokMSA_id:059731 AY133464 clone BB2_141 prokMSA_id:078851 AY177789 Desulforhopalus sp. clone SB1_46 2.28.4.11.085 OTU 1 seq prokMSA_id:072613 AF354663 Desulfobulbus mediterraneus 2.28.4.11.086 OTU 1 seq prokMSA_id:074052 AF354166 delta isolate Eel-36e1D7 2.28.4.11.087 OTU 1 seq prokMSA_id:075038 AY164440 clone ULIB-55 2.28.4.11.088 OTU 1 seq prokMSA_id:075247 AJ518789 delta clone JG37-AG-2 2.28.4.11.089 OTU 2 seqs prokMSA_id:075550 AY164349 clone ALIB-50 prokMSA_id:084574 AY226325 clone UBBB-2 2.28.4.11.090 OTU 1 seq prokMSA_id:075871 AJ518799 delta clone JG37-AG-118 2.28.4.11.091 OTU 1 seq prokMSA_id:076068 AJ518791 delta clone JG37-AG-30 2.28.4.11.092 OTU 2 seqs prokMSA_id:076121 AY164397 delta clone DLIB-22 prokMSA_id:084621 AY226308 delta clone DBBB-70 2.28.4.11.093 OTU 3 seqs prokMSA_id:076683 AY164362 clone ALIB-94 prokMSA_id:077167 AY164363 clone BLIB-11 prokMSA_id:084929 AY226260 clone BBBB-6 2.28.4.11.094 OTU 1 seq prokMSA_id:076718 AY164375 delta clone BLIB-44 2.28.4.11.095 OTU 1 seq prokMSA_id:077109 AY164369 clone BLIB-29 2.28.4.11.096 OTU 1 seq prokMSA_id:077148 AY164420 delta clone DLIB-81 2.28.4.11.097 OTU 2 seqs prokMSA_id:078189 AJ535234 delta clone Hyd89-08 prokMSA_id:077619 AJ535252 delta clone Hyd89-51 2.28.4.11.098 OTU 1 seq prokMSA_id:077668 AY171307 clone s57 2.28.4.11.099 OTU 1 seq prokMSA_id:077760 AJ535237 delta clone Hyd01-n 2.28.4.11.100 OTU 1 seq prokMSA_id:077769 AJ535253 delta clone Hyd89-29 2.28.4.11.102 OTU 4 seqs prokMSA_id:023924 AF424181 delta MERTZ_2CM_15 prokMSA_id:059728 AY133467 clone OB3_143 prokMSA_id:077797 AY171382 clone s9 prokMSA_id:078670 AY177798 Desulfocapsa sp. clone SB1_88 2.28.4.11.103 OTU 5 seqs prokMSA_id:078211 AJ535220 delta clone Hyd01-14 prokMSA_id:078250 AJ535227 delta clone Hyd24-14 prokMSA_id:077808 AJ535238 delta clone Hyd24-21 prokMSA_id:098407 AJ575987 delta clone T6-Ph07-877 prokMSA_id:083452 AY226244 delta clone BBBB-36 2.28.4.11.104 OTU 3 seqs prokMSA_id:077915 AJ535236 delta clone Hyd24-08 prokMSA_id:077927 AJ535251 delta clone Hyd89-40 prokMSA_id:087559 AY279069 clone CS046 2.28.4.11.105 OTU 1 seq prokMSA_id:077940 AJ535243 delta clone Hyd24-30 2.28.4.11.106 OTU 2 seqs prokMSA_id:078656 AY177792 Desulforhopalus sp. clone SB5_82 prokMSA_id:078728 AY177796 Desulforhopalus sp. clone SB1_68 2.28.4.11.107 OTU 1 seq prokMSA_id:079101 AJ431236 Cytophaga sp. BHI60-57B strain BHI60-57B 2.28.4.11.108 OTU 1 seq prokMSA_id:079376 AB100011 sequences clone: IndB4-15 2.28.4.11.109 OTU 1 seq prokMSA_id:081065 AY216457 clone KM85 2.28.4.11.110 OTU 1 seq prokMSA_id:081455 AJ548924 Desulfocapsa sp. clone BIOEST-35 2.28.4.11.111 OTU 1 seq prokMSA_id:081684 AY217386 LTCE-T2A 4A 2.28.4.11.112 OTU 1 seq prokMSA_id:082114 AY216446 clone KM15 2.28.4.11.113 OTU 2 seqs prokMSA_id:084023 AY226249 delta clone BBBB-43 prokMSA_id:083356 AY226327 delta clone UBBB-27 2.28.4.11.114 OTU 1 seq prokMSA_id:086003 AY226204 delta clone ABBB-33 2.28.4.11.115 OTU 1 seq prokMSA_id:086795 AB110549 Desulfobulbaceae Pro1 2.28.4.11.116 OTU 1 seq prokMSA_id:087006 AY279059 clone CS026 2.28.4.11.117 OTU 2 seqs prokMSA_id:087285 AB110538 Desulfobacteraceae MSL53 prokMSA_id:087194 AB110542 Desulfobacteraceae MSL86 2.28.4.11.118 OTU 1 seq prokMSA_id:087515 AY279044 clone CS032 2.28.4.11.119 OTU 1 seq prokMSA_id:088676 AB113179 epsilon clone:pCIRB-35 2.28.4.11.120 OTU 1 seq prokMSA_id:089109 AB113189 epsilon clone:pCIRB-78 2.28.4.11.121 OTU 1 seq prokMSA_id:089140 AY327188 clone ZB4 2.28.4.11.122 OTU 1 seq prokMSA_id:089269 AY327885 delta clone SF_C4-E 2.28.4.11.123 OTU 1 seq prokMSA_id:090045 AY327187 clone ZB2 2.28.4.11.124 OTU 1 seq prokMSA_id:090296 AY327886 delta clone SF_C6-D1 2.28.4.11.125 OTU 1 seq prokMSA_id:091281 AY344395 clone L10-6 2.28.4.11.126 OTU 1 seq prokMSA_id:092551 AY354163 clone pIR3BD03 2.28.4.11.127 OTU 1 seq prokMSA_id:092858 AY354183 clone pIR3BG06 2.28.4.11.128 OTU 1 seq prokMSA_id:095584 AY160860 clone COB P4-29 2.28.4.11.129 OTU 1 seq prokMSA_id:096561 AY160859 clone COB P5-28 2.28.4.11.130 OTU 1 seq prokMSA_id:098383 AY160861 clone COB P5-3 2.28.4.11.999 poor quality 180 seqs prokMSA_id:032281 AB011327 clone: MUG35 prokMSA_id:044638 AB011328 clone: MUG36 prokMSA_id:035087 AB042510 methane-seep sediment SB-5 prokMSA_id:074432 AB069765 clone:DGGE-band 1 prokMSA_id:089898 AB097953 sulfate-reducing clone: Acetate18 prokMSA_id:088426 AB097956 sulfate-reducing clone: Propionate15 prokMSA_id:088440 AB097957 sulfate-reducing clone: Propionate19 prokMSA_id:090205 AB097958 sulfate-reducing clone: Propionate32 prokMSA_id:010812 AF030774 clone AdriaticR16. prokMSA_id:010813 AF030775 clone Adriatic76. prokMSA_id:035186 AF109140 freshwater LCK-05 prokMSA_id:044140 AF109141 freshwater LCK-20 prokMSA_id:039116 AF121082 ODPB-U4 prokMSA_id:050493 AF121083 ODPB-U9 prokMSA_id:048793 AF121084 ODP8-U1 prokMSA_id:024729 AF128689 soil S074 prokMSA_id:048377 AF132866 Desulfobulbus sp. 'Ace 13m' prokMSA_id:016503 AF141496 delta clone CRE-PA6 prokMSA_id:047927 AF141537 delta clone CRE-PA66 prokMSA_id:029685 AF180306 Alvinella pompejana symbiont apg162 prokMSA_id:019174 AF194204 delta n16d prokMSA_id:036081 AF209001 vent ML-5 prokMSA_id:017175 AF209004 vent ML-9a prokMSA_id:036057 AF209005 vent ML-9b prokMSA_id:030350 AF211259 Desulfobacterium CE24 prokMSA_id:032021 AF211268 Desulfobulbus MT24 prokMSA_id:023767 AF211273 delta MT23 prokMSA_id:041562 AF223259 delta B2M1 prokMSA_id:045608 AF223269 delta B2M53 prokMSA_id:046063 AF223274 delta B2M9 prokMSA_id:020814 AF228119 Desulfocapsa sp. La4.1 prokMSA_id:030650 AF273325 IAFESC10 prokMSA_id:016511 AF285609 Car163f prokMSA_id:040267 AF328186 clone KS43f prokMSA_id:035140 AF332261 clone C12-6 prokMSA_id:067988 AF365774 clone BT60DS4BH7 prokMSA_id:028860 AF367393 delta clone D070 prokMSA_id:018860 AF369726 delta clone 136 prokMSA_id:067760 AF423363 Acidobacteria/Holophaga group isolate DGGE band D3 prokMSA_id:047056 AF424235 delta MERTZ_0CM_172 prokMSA_id:029559 AF429150 clone CR99-24-40 prokMSA_id:043560 AF432273 delta FO-0d-41 prokMSA_id:065889 AF507435 soil clone C099 prokMSA_id:056372 AF507609 soil clone C180 prokMSA_id:065630 AF507769 soil clone S1158 prokMSA_id:066342 AF508197 clone CN MLS Band2 prokMSA_id:066339 AF508200 clone CN MLS Band5 prokMSA_id:063256 AF523964 clone FW18 prokMSA_id:061134 AF530125 isolate MGP DGGE Band 25 prokMSA_id:058833 AF534234 delta clone delta da1 prokMSA_id:058830 AF534237 delta clone delta da4 prokMSA_id:058831 AF534239 delta clone delta da6 prokMSA_id:058823 AF534249 delta clone delta da9 prokMSA_id:059926 AF538276 delta DGGE gel band 2 prokMSA_id:059924 AF538277 delta DGGE gel band 1 prokMSA_id:073100 AF544905 delta clone A191-16 prokMSA_id:027026 AJ006620 sulfate-reducing STP23 strain STP23 prokMSA_id:022630 AJ225374 species ; clone 18 prokMSA_id:050907 AJ240972 delta Sva0010a prokMSA_id:048221 AJ240973 delta Sva0010b prokMSA_id:010838 AJ241012 clone Sva1075. prokMSA_id:047362 AJ289719 delta KB2 prokMSA_id:019428 AJ289722 delta KB5 prokMSA_id:048475 AJ289727 delta KB31 prokMSA_id:016924 AJ289735 delta KB47 prokMSA_id:052610 AJ289737 delta KB52 prokMSA_id:043101 AJ289738 delta RS5B prokMSA_id:031509 AJ289739 delta RS6B prokMSA_id:043718 AJ289742 delta RS12 prokMSA_id:037724 AJ289747 delta RS25 prokMSA_id:033913 AJ289751 delta RS40 prokMSA_id:073158 AJ289752 delta RS41 prokMSA_id:033203 AJ289754 delta RS60 prokMSA_id:046522 AJ296611 GR-Sh2-74 clone GR-Sh2-74 prokMSA_id:039483 AJ297623 clone C44K46 prokMSA_id:025548 AJ318381 Desulfotalea sp. SFA4 prokMSA_id:043320 AJ318382 Desulfotalea sp. SFA4 prokMSA_id:047979 AJ421909 clone Alt9-K92 prokMSA_id:085029 AJ495637 delta isolate SA-39 prokMSA_id:057287 AJ518189 clone Mul2P1-16 prokMSA_id:056378 AJ518336 clone Neu2P1-83 prokMSA_id:070649 AJ518490 clone Qui2P1-74 prokMSA_id:094645 AJ582246 Desulfobacterales clone AC39 prokMSA_id:094348 AJ582259 Desulfocapsa sp. clone AC106 prokMSA_id:020641 AY038392 clone CD3A4 prokMSA_id:020821 AY038555 delta clone CD1D7 prokMSA_id:046489 AY038557 delta clone CD1D6 prokMSA_id:065091 AY095725 NL-112 prokMSA_id:063027 AY122597 clone MW2-13 prokMSA_id:062252 AY123202 delta clone ca11 prokMSA_id:062251 AY123207 delta clone ca32 prokMSA_id:062249 AY123208 delta clone ca33 prokMSA_id:062239 AY123214 delta clone ca5 prokMSA_id:062244 AY123218 delta clone ca7 prokMSA_id:059748 AY133448 clone OB3_3 prokMSA_id:097117 AY160858 clone COB P5-7 prokMSA_id:076254 AY164338 delta clone ALIB-115 prokMSA_id:079645 AY192994 Chloroflexi clone BMSB5 prokMSA_id:080006 AY192995 clone BMSB6 prokMSA_id:079850 AY193001 clone BolB5 prokMSA_id:080798 AY193018 clone SRE11 prokMSA_id:080526 AY193032 clone BMSA3 prokMSA_id:096117 AY211752 delta clone GoM GC234 609S6 prokMSA_id:095576 AY211762 delta clone GoM GC234 680S6 prokMSA_id:096392 AY211765 delta clone GoM GC234 694S6 prokMSA_id:086716 AY261398 clone RFLP U17 prokMSA_id:087152 AY261415 clone RFLP U93 prokMSA_id:087512 AY261422 clone RFLP U114 prokMSA_id:089407 AY323192 beta clone A134-6 prokMSA_id:095070 AY369149 clone F-OTU9 prokMSA_id:094863 AY374654 delta clone PI_6L57 prokMSA_id:094982 AY374665 delta clone PI_6O63 prokMSA_id:094457 AY374668 delta clone PI_6H72 prokMSA_id:095142 AY374671 delta clone PI_6Q19 prokMSA_id:094929 AY374674 delta clone PI_6N57 prokMSA_id:095096 AY374678 delta clone PI_6Q44 prokMSA_id:095069 AY374683 delta clone PI_6Q85 prokMSA_id:094554 AY374685 delta clone PI_6G48 prokMSA_id:094855 AY374702 delta clone PI_6SG05 prokMSA_id:094592 AY374703 delta clone PI_6AG12 prokMSA_id:094437 AY374705 delta clone PI_6SH07 prokMSA_id:094845 AY374706 delta clone PI_6AH09 prokMSA_id:094368 AY374721 delta clone PI_6RD02 prokMSA_id:095090 AY374730 delta clone PI_6TF01 prokMSA_id:094639 AY374735 delta clone PI_6VH08 prokMSA_id:095103 AY374736 delta clone PI_nr13_c5 prokMSA_id:094824 AY374749 delta clone PI_r138_c2 prokMSA_id:094951 AY374753 delta clone PI_r157_c2 prokMSA_id:094299 AY374761 delta clone PI_r36_c3 prokMSA_id:094904 AY374766 delta clone PI_r59_c3 prokMSA_id:095077 AY374771 delta clone PI_r67_c2 prokMSA_id:094912 AY374774 delta clone PI_r88_c2 prokMSA_id:094631 AY374784 delta clone PI_nn5_c3 prokMSA_id:095016 AY374788 delta clone PI_nr16_c14 prokMSA_id:094285 AY374796 delta clone PI_nr6_c7 prokMSA_id:094452 AY374799 delta clone PI_r124_c3 prokMSA_id:095042 AY374816 delta clone PI_srb6XG11 prokMSA_id:094704 AY374821 delta clone PI_6FE01 prokMSA_id:094549 AY374823 delta clone PI_6XF01 prokMSA_id:094543 AY374826 delta clone PI_6H65 prokMSA_id:094334 AY374835 delta clone PI_6L37 prokMSA_id:094664 AY374836 delta clone PI_6H55 prokMSA_id:094328 AY374847 delta clone PI_6D51 prokMSA_id:095006 AY374854 delta clone PI_6D39 prokMSA_id:094797 AY374863 delta clone PI_6BC01 prokMSA_id:094925 AY374864 delta clone PI_6BC02_F03 prokMSA_id:094624 AY374871 delta clone PI_6BE01 prokMSA_id:095037 AY374876 delta clone PI_6SG11 prokMSA_id:094304 AY374878 delta clone PI_6BH10 prokMSA_id:094455 AY374882 delta clone PI_6TA08 prokMSA_id:094310 AY374894 delta clone PI_6TC07 prokMSA_id:094852 AY374895 delta clone PI_6VD08 prokMSA_id:094900 AY374911 delta clone PI_nr11_c3 prokMSA_id:094597 AY374913 delta clone PI_nr18_c9 prokMSA_id:094629 AY374914 delta clone PI_nr20_c4 prokMSA_id:094953 AY374915 delta clone PI_nr22_c3 prokMSA_id:094596 AY374923 delta clone PI_nr7_c6 prokMSA_id:094308 AY374928 delta clone PI_r110_c2 prokMSA_id:094947 AY374933 delta clone PI_r129_c2 prokMSA_id:094303 AY374940 delta clone PI_r149_c2 prokMSA_id:094782 AY374942 delta clone PI_r151_c2 prokMSA_id:094352 AY374950 delta clone PI_r168_c2 prokMSA_id:095099 AY374955 delta clone PI_r20_c5 prokMSA_id:095044 AY374975 delta clone PI_r70_c2 prokMSA_id:094777 AY374981 delta clone PI_r8_c8 prokMSA_id:094781 AY374982 delta clone PI_r94_c2 prokMSA_id:010842 D26196 soil from paddy field clone PAD9. prokMSA_id:010843 D26202 soil from paddy field clone PAD15. prokMSA_id:010806 D26247 soil from paddy field clone PAD60. prokMSA_id:010808 L40785 Desulfobulbus sp. prokMSA_id:010804 L40786 Desulfobulbus sp. prokMSA_id:010805 M34410 Desulfobulbus propionicus str. 1 pr 3 Lindhorst ATCC 33891 . prokMSA_id:010807 M34411 Desulfobulbus sp. str. 3pr10 DSM 2058. prokMSA_id:010841 U08390 clone A35. prokMSA_id:010789 U46513 clone DBUL8. prokMSA_id:010835 U46514 clone DBUL31. prokMSA_id:049591 U46515 oil field DBUL35 prokMSA_id:019702 U81684 clone vadinBD10 prokMSA_id:010786 X91439 clone A16jk. prokMSA_id:028163 Z82974 sp. clone group T17C 2.28.4.12 SYNTROPHUS_GROUP 123 seqs 2.28.4.12.001 OTU 3 seqs prokMSA_id:010860 AF126282 Smithella propionica str. LYP. prokMSA_id:077388 AF482441 clone R4b16 prokMSA_id:010853 X87269 clone 7. 2.28.4.12.004 OTU 3 seqs prokMSA_id:010851 AF050535 clone WCHA1-07. prokMSA_id:010858 AJ133795 Syntrophus sp. prokMSA_id:010859 AJ133796 Syntrophus sp. 2.28.4.12.005 OTU 1 seq prokMSA_id:010857 AJ133794 Syntrophus sp. 2.28.4.12.006 OTU 2 seqs prokMSA_id:010856 AF146263 clone SCALE-11. prokMSA_id:085815 AY226326 clone UBBB-26 2.28.4.12.007 OTU 1 seq prokMSA_id:010855 AF142797 Syntrophus ACE-20. 2.28.4.12.008 OTU 1 seq prokMSA_id:010854 AF142809 Syntrophus ACE-34. 2.28.4.12.009 OTU 1 seq prokMSA_id:010850 AF050534 clone WCHB1-12. 2.28.4.12.011 OTU 1 seq prokMSA_id:010845 AJ009471 clone SJA-63. 2.28.4.12.012 OTU 1 seq prokMSA_id:016515 AF142926 PENDANT-14 2.28.4.12.013 OTU 2 seqs prokMSA_id:017112 AF254389 UASB_TL9 complete prokMSA_id:071592 AF254402 UASB_TL119 complete 2.28.4.12.015 OTU 1 seq prokMSA_id:019024 AF402978 clone 2.28.4.12.016 OTU 2 seqs prokMSA_id:019918 AF351212 delta clone 12-2 prokMSA_id:039383 AF351238 delta clone 8-45 2.28.4.12.017 OTU 1 seq prokMSA_id:020266 AF385539 Bdellovibrio sp. oral clone CA006 2.28.4.12.018 OTU 1 seq prokMSA_id:021347 AF351220 delta clone 36-11 2.28.4.12.019 OTU 1 seq prokMSA_id:023309 AF424228 delta MERTZ_2CM_345 2.28.4.12.020 OTU 1 seq prokMSA_id:023625 AF371949 clone p-4193-6Wa5 2.28.4.12.021 OTU 1 seq prokMSA_id:024941 AF254392 UASB_TL12 complete 2.28.4.12.023 OTU 1 seq prokMSA_id:028068 AF142852 BURTON-34 2.28.4.12.024 OTU 1 seq prokMSA_id:032779 AF058008 RFLP40 2.28.4.12.025 OTU 1 seq prokMSA_id:033974 AF254399 UASB_TL17 complete 2.28.4.12.026 OTU 1 seq prokMSA_id:034985 AY053494 AT425_EubF5 2.28.4.12.027 OTU 1 seq prokMSA_id:036010 AJ347756 delta clone ST-12K13 2.28.4.12.028 OTU 1 seq prokMSA_id:037165 AF229793 TA20 2.28.4.12.029 OTU 1 seq prokMSA_id:056266 AJ306775 clone SHA-79 2.28.4.12.030 OTU 1 seq prokMSA_id:047986 AF229782 TA09 2.28.4.12.031 OTU 1 seq prokMSA_id:048110 AF225446 BA18 2.28.4.12.032 OTU 1 seq prokMSA_id:048781 AF229780 TA07 2.28.4.12.033 OTU 1 seq prokMSA_id:049460 AF424442 candidate division OP11 MERTZ_2CM_242 2.28.4.12.034 OTU 1 seq prokMSA_id:050407 AF424241 delta MERTZ_21CM_87 2.28.4.12.035 OTU 1 seq prokMSA_id:051132 AJ007651 clone 1405-10 2.28.4.12.036 OTU 1 seq prokMSA_id:052345 AF323771 clone BA094 complete 2.28.4.12.037 OTU 1 seq prokMSA_id:063258 AF523966 clone FW99 2.28.4.12.038 OTU 1 seq prokMSA_id:063262 AF523957 clone FW117 2.28.4.12.039 OTU 1 seq prokMSA_id:066927 AJ306773 clone SHA-51 2.28.4.12.040 OTU 1 seq prokMSA_id:066928 AJ306771 clone SHA-42 2.28.4.12.041 OTU 1 seq prokMSA_id:071533 AF323779 clone BA069 complete 2.28.4.12.042 OTU 1 seq prokMSA_id:076203 AY164374 clone BLIB-39 2.28.4.12.043 OTU 3 seqs prokMSA_id:086622 AB092910 clone:AHU25 prokMSA_id:077432 AF482437 clone R2b29 prokMSA_id:077467 AF482443 clone R4b9 2.28.4.12.044 OTU 1 seq prokMSA_id:078178 AY171337 clone s70 2.28.4.12.045 OTU 1 seq prokMSA_id:080816 AB094954 clone:OHKB16.24 2.28.4.12.046 OTU 1 seq prokMSA_id:080832 AY193159 clone BTM20 2.28.4.12.047 OTU 1 seq prokMSA_id:081001 AY161237 clone SSADM_ED8 2.28.4.12.048 OTU 2 seqs prokMSA_id:082811 AY261813 Syntrophus sp. clone PD-UASB-35 prokMSA_id:083667 AY261816 Syntrophus sp. clone PD-UASB-5 2.28.4.12.049 OTU 1 seq prokMSA_id:083286 AY214851 delta clone BB-2-E1F 2.28.4.12.050 OTU 1 seq prokMSA_id:084355 AY242744 soil clone Tc119-C02 2.28.4.12.051 OTU 1 seq prokMSA_id:084502 AY226225 clone ABBB-8 2.28.4.12.052 OTU 1 seq prokMSA_id:084693 AY226271 clone BBBB-9 2.28.4.12.054 OTU 12 seqs prokMSA_id:025179 AF323758 clone BA003 complete prokMSA_id:027573 AF323763 clone BA039 complete prokMSA_id:032886 AF323766 clone BA044 complete prokMSA_id:018138 AF323776 clone BA053 complete prokMSA_id:086627 AY261815 Syntrophus sp. clone PD-UASB-40 prokMSA_id:084489 AY261817 Syntrophus sp. clone PD-UASB-54 prokMSA_id:085759 AY261818 Syntrophus sp. clone PD-UASB-57 prokMSA_id:089665 AY297981 clone TA55_Ba_114 prokMSA_id:090620 AY297985 clone TA55_Ba_133 prokMSA_id:010846 U81674 clone vadinBC38. prokMSA_id:010844 X85131 Syntrophus buswellii str. DM-3 DSM 02612 . prokMSA_id:010849 X85132 Syntrophus gentianae str. HQGoe1 DSM 8423 . 2.28.4.12.055 OTU 1 seq prokMSA_id:090769 AY221614 soil clone HS9-74 2.28.4.12.056 OTU 1 seq prokMSA_id:094478 AJ583187 delta clone S15B-MN10 2.28.4.12.057 OTU 1 seq prokMSA_id:094853 AJ583188 delta clone S15B-MN12 2.28.4.12.058 OTU 1 seq prokMSA_id:095547 AY211659 delta clone GoM GC185 508E 2.28.4.12.059 OTU 1 seq prokMSA_id:095885 AY225606 delta clone AT-s3-57 2.28.4.12.060 OTU 1 seq prokMSA_id:096007 AY211763 delta clone GoM GC234 681S5 2.28.4.12.061 OTU 1 seq prokMSA_id:096256 AY211675 delta clone GoM GC234 610E 2.28.4.12.062 OTU 1 seq prokMSA_id:096300 AY211745 delta clone GoM GC234 054S5 2.28.4.12.999 poor quality 46 seqs prokMSA_id:074838 AB011321 clone: MUG29 prokMSA_id:047704 AB011322 clone: MUG30 prokMSA_id:021744 AB011323 clone: MUG31 prokMSA_id:043279 AF016745 soil clone S-34 prokMSA_id:028571 AF016751 soil clone S-40 prokMSA_id:074708 AF016755 soil clone S-44 prokMSA_id:073944 AF104287 135 prokMSA_id:038420 AF289901 alpha Kmlps6-3 prokMSA_id:074264 AF354152 delta isolate Eel-BE1D3 prokMSA_id:072185 AF354157 delta isolate Eel-TE1C4 prokMSA_id:027785 AF428670 clone CRP99-16 prokMSA_id:036618 AF429046 clone CR99-7-12 prokMSA_id:050648 AF447135 clone TDC-S5:51 prokMSA_id:064582 AF467392 Borrelia sp. clone 2387 prokMSA_id:067084 AF499376 clone JCL1-8 prokMSA_id:066338 AF508201 clone CN MLS Band6 prokMSA_id:059419 AF540851 clone DP10u10 prokMSA_id:059417 AF540852 clone DP10-7 prokMSA_id:059416 AF540853 clone DP10-8 prokMSA_id:055870 AF540854 clone DP11u38 prokMSA_id:059418 AF540855 clone DP10-11 prokMSA_id:059420 AF540856 clone DP10-14 prokMSA_id:055919 AJ306806 clone SHD-4 prokMSA_id:057312 AJ518121 clone Mul01-4 prokMSA_id:072931 AJ518135 clone Mul01-7 prokMSA_id:057278 AJ518197 clone Mul2P1-36 prokMSA_id:057080 AJ518462 clone Neu4P3-84 prokMSA_id:056963 AJ518613 clone Qui4P2-89 prokMSA_id:056944 AJ518642 clone Sai1P1-99 prokMSA_id:034352 AY037699 earthworm cast clone C046 prokMSA_id:084197 AY092375 clone BF82 prokMSA_id:080724 AY192314 delta clone S1a-6G prokMSA_id:080711 AY193213 clone SRC58 prokMSA_id:097033 AY211755 delta clone GoM GC234 615S6 prokMSA_id:082544 AY280643 delta clone G2-29 prokMSA_id:093685 AY361943 clone P8-GEO-8 prokMSA_id:094590 AY374666 delta clone PI_6O95 prokMSA_id:095095 AY374673 delta clone PI_6G13 prokMSA_id:094286 AY374751 delta clone PI_r152_c2473 prokMSA_id:010847 U43641 clone EH-7. prokMSA_id:010848 U43642 clone EH-14. prokMSA_id:037888 U81640 clone vadinBA01 prokMSA_id:010852 U86447 Syntrophus acidotrophicus. prokMSA_id:010862 X91282 clone G30. prokMSA_id:010861 X91440 clone A17o. prokMSA_id:030045 Z96943 strain MR35A 2.28.4.13 DESULFOBACTER_GROUP 719 seqs 2.28.4.13.1 DSF.LIMICOLA_SUBGROUP 235 seqs 2.28.4.13.1.001 OTU 1 seq prokMSA_id:010883 L06458 iron sulfide containing magnetotactic clone MMP1990. 2.28.4.13.1.002 OTU 5 seqs prokMSA_id:019549 AF328857 Olavius algarvensis sulfate-reducing endosymbiont prokMSA_id:040542 AF424191 delta MERTZ_2CM_48 prokMSA_id:010878 AJ240975 clone Sva0081. prokMSA_id:010879 AJ240977 clone Sva0863. prokMSA_id:059742 AY133453 clone OB3_50 2.28.4.13.1.003 OTU 1 seq prokMSA_id:010876 AF177428 str. S2551. 2.28.4.13.1.004 OTU 1 seq prokMSA_id:010875 AJ012595 unnamed organism. 2.28.4.13.1.005 OTU 1 seq prokMSA_id:010874 AF146243 clone CLEAR-20. 2.28.4.13.1.006 OTU 1 seq prokMSA_id:010873 AF146250 clone CLEAR-27. 2.28.4.13.1.007 OTU 3 seqs prokMSA_id:010872 AF142807 clone ACE-32. prokMSA_id:044649 AF146251 CLEAR-29 prokMSA_id:045852 AF424265 delta MERTZ_21CM_410 2.28.4.13.1.008 OTU 1 seq prokMSA_id:010871 AF142937 clone PENDANT-25. 2.28.4.13.1.009 OTU 1 seq prokMSA_id:010870 AJ237607 Desulfobacterium indolicum str. marine mud DSM 3383. 2.28.4.13.1.010 OTU 1 seq prokMSA_id:010869 U45989 Desulfonema magnum str. Montpellier DSM 2077 . 2.28.4.13.1.011 OTU 1 seq prokMSA_id:010867 AF022936 Desulfocella halophila str. GSL-But2. 2.28.4.13.1.012 OTU 3 seqs prokMSA_id:050635 AF148141 Delta S2550 prokMSA_id:047033 AF468969 Delta S2552 prokMSA_id:010866 Y17501 str. Pnd3. 2.28.4.13.1.013 OTU 1 seq prokMSA_id:059744 AY133452 clone OB3_142 2.28.4.13.1.014 OTU 1 seq prokMSA_id:059739 AY133457 clone BB2_215 2.28.4.13.1.015 OTU 2 seqs prokMSA_id:050478 AF424185 delta MERTZ_2CM_32 prokMSA_id:059738 AY133459 clone OB3_35 2.28.4.13.1.016 OTU 1 seq prokMSA_id:059736 AY133458 clone OB3_136 2.28.4.13.1.017 OTU 1 seq prokMSA_id:016532 AF424213 delta MERTZ_2CM_220 2.28.4.13.1.018 OTU 2 seqs prokMSA_id:017064 AF233498 delta DSS68 prokMSA_id:018378 AF354165 delta isolate Eel-36e1H6 2.28.4.13.1.019 OTU 1 seq prokMSA_id:069162 AF211301 MT70 2.28.4.13.1.020 OTU 1 seq prokMSA_id:018786 AF233492 delta DSS12 2.28.4.13.1.021 OTU 1 seq prokMSA_id:020823 AF369727 delta clone 224 2.28.4.13.1.022 OTU 4 seqs prokMSA_id:059379 AY083011 delta clone SLM-DSN-2 prokMSA_id:059378 AY083014 delta clone SLM-DSN-5 prokMSA_id:059377 AY083015 delta clone SLM-DSN-6 prokMSA_id:059375 AY083016 delta clone SLM-DSN-7 2.28.4.13.1.023 OTU 1 seq prokMSA_id:022091 AF224828 clone Car37fc 2.28.4.13.1.024 OTU 1 seq prokMSA_id:022240 AF224861 clone Car148rc 2.28.4.13.1.025 OTU 1 seq prokMSA_id:022644 AF424216 delta MERTZ_2CM_229 2.28.4.13.1.026 OTU 1 seq prokMSA_id:023602 AF424184 delta MERTZ_2CM_30 2.28.4.13.1.027 OTU 1 seq prokMSA_id:024077 AF418173 Desulfococcus multivorans DSM 2059 2.28.4.13.1.028 OTU 1 seq prokMSA_id:069464 AF211272 delta MT25 2.28.4.13.1.029 OTU 2 seqs prokMSA_id:024500 AJ300508 sulphate reducing DSB-DSb99-2 prokMSA_id:041496 AJ300510 sulphate reducing DSB-DSa99-4 2.28.4.13.1.030 OTU 1 seq prokMSA_id:026350 AF233494 delta DSS5 2.28.4.13.1.031 OTU 1 seq prokMSA_id:026478 AF424214 delta MERTZ_2CM_222 2.28.4.13.1.032 OTU 1 seq prokMSA_id:027564 AF233500 delta DSS71 2.28.4.13.1.033 OTU 1 seq prokMSA_id:027966 AF338764 clone C 2.28.4.13.1.034 OTU 1 seq prokMSA_id:029306 AF424182 delta MERTZ_2CM_23 2.28.4.13.1.035 OTU 1 seq prokMSA_id:029555 AF424246 delta MERTZ_21CM_196 2.28.4.13.1.036 OTU 2 seqs prokMSA_id:070417 AF354158 delta isolate SB-24e1C6 prokMSA_id:045289 AF354164 delta isolate Eel-36e1H1 2.28.4.13.1.037 OTU 1 seq prokMSA_id:031019 AJ252630 Agricultural soil clone SC-I-31 2.28.4.13.1.038 OTU 1 seq prokMSA_id:031848 AF243334 Desulforegula conservatrix 2.28.4.13.1.039 OTU 1 seq prokMSA_id:034381 AF224824 clone Car99rb 2.28.4.13.1.040 OTU 1 seq prokMSA_id:034662 AF369723 delta clone 53 2.28.4.13.1.041 OTU 1 seq prokMSA_id:034780 AF424251 delta MERTZ_21CM_248 2.28.4.13.1.042 OTU 1 seq prokMSA_id:035610 AB022634 delta TK02 2.28.4.13.1.043 OTU 1 seq prokMSA_id:035699 AF424247 delta MERTZ_21CM_204 2.28.4.13.1.044 OTU 1 seq prokMSA_id:036298 AF424215 delta MERTZ_2CM_224 2.28.4.13.1.045 OTU 1 seq prokMSA_id:036429 AF424261 delta MERTZ_21CM_340 2.28.4.13.1.046 OTU 1 seq prokMSA_id:036468 AF424212 delta MERTZ_2CM_195 2.28.4.13.1.047 OTU 1 seq prokMSA_id:036525 AF424260 delta MERTZ_21CM_335 2.28.4.13.1.048 OTU 2 seqs prokMSA_id:037002 AF296213 SY6-81 prokMSA_id:074166 AY050605 clone GOUTB20 2.28.4.13.1.049 OTU 1 seq prokMSA_id:038445 AF424225 delta MERTZ_2CM_324 2.28.4.13.1.050 OTU 1 seq prokMSA_id:055741 AY083027 delta clone SLM-DSBAC-82 2.28.4.13.1.051 OTU 1 seq prokMSA_id:044557 AF424250 delta MERTZ_21CM_242 2.28.4.13.1.052 OTU 1 seq prokMSA_id:044839 AF424211 delta MERTZ_2CM_190 2.28.4.13.1.053 OTU 1 seq prokMSA_id:045864 AB031641 delta TIHP368-21 2.28.4.13.1.054 OTU 1 seq prokMSA_id:046593 AJ277887 Desulfococcus biacutus strain DSM 5651T 2.28.4.13.1.055 OTU 1 seq prokMSA_id:047008 AF424248 delta MERTZ_21CM_211 2.28.4.13.1.056 OTU 1 seq prokMSA_id:047732 AF441956 delta clone CD12B1 2.28.4.13.1.057 OTU 1 seq prokMSA_id:047815 AF424204 delta MERTZ_2CM_130 2.28.4.13.1.058 OTU 1 seq prokMSA_id:049238 AF211263 Desulfonema CE101 2.28.4.13.1.059 OTU 1 seq prokMSA_id:050014 AF233495 delta DSS55 2.28.4.13.1.060 OTU 1 seq prokMSA_id:051574 AF142941 PENDANT-29 2.28.4.13.1.061 OTU 1 seq prokMSA_id:051809 AF233499 delta DSS7 2.28.4.13.1.062 OTU 1 seq prokMSA_id:052002 AF058007 RFLP25 2.28.4.13.1.063 OTU 1 seq prokMSA_id:052376 AJ300509 sulphate reducing DSB-DSb99-3 2.28.4.13.1.064 OTU 1 seq prokMSA_id:059747 AY133451 clone OB3_87 2.28.4.13.1.065 OTU 1 seq prokMSA_id:063565 AB069807 clone:CS8.29 2.28.4.13.1.066 OTU 1 seq prokMSA_id:066111 AB074941 spirochete clone:KB43 2.28.4.13.1.067 OTU 1 seq prokMSA_id:067845 AY082461 delta clone 44a-B1-17 2.28.4.13.1.068 OTU 1 seq prokMSA_id:070799 AF354160 delta isolate SB-24e1B12 2.28.4.13.1.069 OTU 1 seq prokMSA_id:071734 AY083025 delta clone SLM-DSBAC-75 2.28.4.13.1.070 OTU 1 seq prokMSA_id:071766 AF354151 delta isolate Eel-BE1B3 2.28.4.13.1.071 OTU 1 seq prokMSA_id:073235 AF420350 isolate CS_B014 2.28.4.13.1.072 OTU 3 seqs prokMSA_id:075578 AY164372 delta clone BLIB-34 prokMSA_id:075876 AY164445 delta clone ULIB-65 prokMSA_id:083235 AY226336 delta clone UBBB-60 2.28.4.13.1.073 OTU 1 seq prokMSA_id:077708 AJ535240 delta clone Hyd89-04 2.28.4.13.1.074 OTU 1 seq prokMSA_id:077873 AJ535249 delta clone Hyd89-61 2.28.4.13.1.075 OTU 1 seq prokMSA_id:078071 AB089068 clone:Rs-J96 2.28.4.13.1.076 OTU 1 seq prokMSA_id:078122 AJ535235 delta clone Hyd89-21 2.28.4.13.1.077 OTU 1 seq prokMSA_id:080885 AY193242 clone Bol41 2.28.4.13.1.078 OTU 1 seq prokMSA_id:081354 AY216443 clone KM88 2.28.4.13.1.079 OTU 1 seq prokMSA_id:081529 AY216453 clone KM62 2.28.4.13.1.080 OTU 1 seq prokMSA_id:086261 AB092885 clone:ALU43 2.28.4.13.1.081 OTU 1 seq prokMSA_id:088475 AY327189 clone ZB9 2.28.4.13.1.082 OTU 1 seq prokMSA_id:090319 AY245462 delta clone ML28_DCC1 2.28.4.13.1.999 poor quality 135 seqs prokMSA_id:038216 AB062691 clone:DGGE band E prokMSA_id:071221 AB081535 Oil-K-2 prokMSA_id:056126 AB081545 Tol-K-1 prokMSA_id:068465 AB081554 Ben-M2-14 prokMSA_id:088109 AB097949 sulfate-reducing clone: Biofilm61 prokMSA_id:047093 AF035425 Solar Lake delta prokMSA_id:033579 AF121085 ODP8-U3 prokMSA_id:022191 AF141472 delta prokMSA_id:032185 AF211261 delta CE53 prokMSA_id:028035 AF211274 delta MT27 prokMSA_id:043357 AF223261 delta B2M16 prokMSA_id:021134 AF223277 delta B2M36 prokMSA_id:021074 AF296190 SY6-5 prokMSA_id:047134 AF296208 SY6-64 prokMSA_id:032717 AF296216 SY6-92 prokMSA_id:016937 AF332327 clone C26-19 prokMSA_id:073567 AF360637 clone INOC-RNA1 prokMSA_id:072051 AF360639 clone INOC-RNA22 prokMSA_id:072937 AF360641 clone INOC-RNA3 prokMSA_id:068308 AF361655 clone MN16BT2-17 prokMSA_id:068307 AF361658 clone MN16BT2-21 prokMSA_id:068017 AF365738 clone BT60DS4BC3 prokMSA_id:068011 AF365744 clone BT60DS4BD5 prokMSA_id:039674 AF369725 delta clone 134 prokMSA_id:051127 AF441886 delta clone CD13H8 prokMSA_id:045826 AF442018 delta clone CD12H2 prokMSA_id:032078 AF446295 delta FL03E08 prokMSA_id:050280 AF473908 delta 128-11 prokMSA_id:065828 AF507504 soil clone S0130 prokMSA_id:056391 AF523334 clone P4-47 prokMSA_id:056716 AF523335 clone P4-35 prokMSA_id:061138 AF530121 isolate MGP DGGE Band 22 prokMSA_id:061137 AF530122 isolate MGP DGGE Band 23 prokMSA_id:061135 AF530123 isolate MGP DGGE Band 24A prokMSA_id:059936 AF538272 delta DGGE gel band 6 prokMSA_id:055898 AF544878 delta clone D1-22 prokMSA_id:070739 AF544879 delta clone D1-29 prokMSA_id:070425 AF544936 delta clone 7-9 prokMSA_id:047479 AJ011668 DGGE amplificate BS3 prokMSA_id:036786 AJ289730 delta KB40B prokMSA_id:030229 AJ289731 delta KB40D prokMSA_id:074484 AJ289736 delta KB48 prokMSA_id:039493 AJ300507 sulphate reducing DSB-DSb99-1 clone DSB-DSb99-1 prokMSA_id:024054 AJ305059 delta 63-2 prokMSA_id:052197 AJ347755 delta clone ST-12K6 prokMSA_id:085159 AJ495604 delta isolate SA-4 prokMSA_id:083247 AJ495610 delta isolate SA-10 prokMSA_id:085954 AJ495619 delta isolate SA-19 prokMSA_id:086001 AJ495645 delta isolate SA-50 prokMSA_id:057228 AJ518275 clone Mul2P3-19 prokMSA_id:057226 AJ518276 clone Mul2P3-20 prokMSA_id:057126 AJ518404 clone Neu4P2-30 prokMSA_id:056877 AJ518721 clone Sai4P3-40 prokMSA_id:056874 AJ518725 clone Sai4P3-46 prokMSA_id:056861 AJ518743 clone Sai4P3-71 prokMSA_id:044996 AY038518 delta clone CD4G7 prokMSA_id:043821 AY038529 delta clone CD4D6 prokMSA_id:059380 AY083010 delta clone SLM-DSN-1 prokMSA_id:059376 AY083012 delta clone SLM-DSN-3 prokMSA_id:086488 AY226265 delta clone BBBB-75 prokMSA_id:087427 AY261390 clone RFLP U3 prokMSA_id:087704 AY283099 delta clone NS-04 prokMSA_id:089463 AY311791 Dpcom93 prokMSA_id:093594 AY361941 clone P8-GEO-4 prokMSA_id:094365 AY374661 delta clone PI_6L14 prokMSA_id:094579 AY374677 delta clone PI_6G44 prokMSA_id:094634 AY374680 delta clone PI_6G84 prokMSA_id:094507 AY374684 delta clone PI_6G46 prokMSA_id:095018 AY374689 delta clone PI_6BA06 prokMSA_id:094938 AY374692 delta clone PI_6BB09 prokMSA_id:094567 AY374695 delta clone PI_6AC11 prokMSA_id:094576 AY374707 delta clone PI_6AH10 prokMSA_id:094762 AY374723 delta clone PI_6UD08 prokMSA_id:094831 AY374741 delta clone PI_r107_c2 prokMSA_id:094996 AY374747 delta clone PI_r125_c2 prokMSA_id:095119 AY374757 delta clone PI_r16_c5 prokMSA_id:094472 AY374770 delta clone PI_r64_c2 prokMSA_id:094820 AY374773 delta clone PI_r85_c2 prokMSA_id:094974 AY374778 delta clone PI_r99_c2 prokMSA_id:094793 AY374780 delta clone PI_nn1_c2 prokMSA_id:094508 AY374787 delta clone PI_nr15_c5 prokMSA_id:094594 AY374794 delta clone PI_nr5_c15 prokMSA_id:095020 AY374804 delta clone PI_r25_c5 prokMSA_id:095023 AY374805 delta clone PI_r41_c5 prokMSA_id:095039 AY374807 delta clone PI_r83_c3 prokMSA_id:094991 AY374811 delta clone PI_r98_c2 prokMSA_id:094894 AY374824 delta clone PI_6YE12 prokMSA_id:094423 AY374830 delta clone PI_6M83 prokMSA_id:094458 AY374831 delta clone PI_6L03 prokMSA_id:095088 AY374832 delta clone PI_6L27 prokMSA_id:094966 AY374833 delta clone PI_6L60 prokMSA_id:095092 AY374834 delta clone PI_6O92 prokMSA_id:094952 AY374842 delta clone PI_6Q05 prokMSA_id:094626 AY374845 delta clone PI_6Q89 prokMSA_id:094406 AY374848 delta clone PI_6N83 prokMSA_id:095011 AY374852 delta clone PI_6G69 prokMSA_id:094419 AY374853 delta clone PI_6G54 prokMSA_id:095028 AY374856 delta clone PI_6G40 prokMSA_id:094541 AY374857 delta clone PI_6SA04 prokMSA_id:095143 AY374861 delta clone PI_6BB04 prokMSA_id:094795 AY374866 delta clone PI_6BC12 prokMSA_id:095161 AY374870 delta clone PI_6BD11 prokMSA_id:094689 AY374885 delta clone PI_6RB07 prokMSA_id:094909 AY374886 delta clone PI_6UB08 prokMSA_id:094844 AY374898 delta clone PI_6TE01 prokMSA_id:094427 AY374899 delta clone PI_6UF01 prokMSA_id:094630 AY374902 delta clone PI_6VF01 prokMSA_id:094981 AY374903 delta clone PI_6RG04 prokMSA_id:094398 AY374910 delta clone PI_6TH07 prokMSA_id:094804 AY374912 delta clone PI_nr17_c3 prokMSA_id:095141 AY374919 delta clone PI_nr27_c3 prokMSA_id:094345 AY374920 delta clone PI_nr28_c7 prokMSA_id:094738 AY374921 delta clone PI_nr29_c4 prokMSA_id:094313 AY374925 delta clone PI_nr9_c4 prokMSA_id:094918 AY374943 delta clone PI_r153_c2 prokMSA_id:094667 AY374944 delta clone PI_r155_c2 prokMSA_id:094868 AY374945 delta clone PI_r156_c2 prokMSA_id:094995 AY374956 delta clone PI_r21_c5 prokMSA_id:094679 AY374957 delta clone PI_r24_c4 prokMSA_id:095087 AY374966 delta clone PI_r45_c3 prokMSA_id:095145 AY374967 delta clone PI_r46_c3 prokMSA_id:094956 AY374969 delta clone PI_r51_c3 prokMSA_id:094806 AY374974 delta clone PI_r68_c2 prokMSA_id:094887 AY374976 delta clone PI_r73_c2 prokMSA_id:095024 AY374980 delta clone PI_r84_c2 prokMSA_id:010880 D26229 soil from paddy field clone PAD42. prokMSA_id:010884 L06457 iron sulfide containing magnetotactic clone MMP1991. prokMSA_id:010868 M34402 Desulfovibrio sapovorans str. 1pa3 Lindhorst ATCC 33892 . prokMSA_id:010863 M34405 Desulfococcus multivorans str. 1 be 1 Goettingen ATCC 33890 . prokMSA_id:010882 U08389 clone A34. prokMSA_id:010881 U08394 clone A52. prokMSA_id:010864 U09845 clone JAP552. prokMSA_id:010865 U45990 Desulfonema limicola str. Jadebusen DSM 2076 . prokMSA_id:010877 U46516 clone DCOC4. prokMSA_id:017663 U85478 sulfate-reducing 2B14 2.28.4.13.2 DSS.VARIABILIS_SUBGROUP 352 seqs 2.28.4.13.2.001 OTU 2 seqs prokMSA_id:010909 AJ241022 clone Sva0405. prokMSA_id:059743 AY133454 clone BB2_111 2.28.4.13.2.003 OTU 1 seq prokMSA_id:010907 AB015240 str. JTB16. 2.28.4.13.2.004 OTU 1 seq prokMSA_id:010906 AF029048 clone SB-30. 2.28.4.13.2.005 OTU 1 seq prokMSA_id:010905 AF029047 clone SB-29. 2.28.4.13.2.006 OTU 1 seq prokMSA_id:010904 AF029045 clone SB-21. 2.28.4.13.2.007 OTU 1 seq prokMSA_id:010903 AJ012596 unnamed organism. 2.28.4.13.2.008 OTU 1 seq prokMSA_id:010902 AF099065 str. LSv21. 2.28.4.13.2.009 OTU 1 seq prokMSA_id:010901 AF099064 str. ASv26. 2.28.4.13.2.010 OTU 1 seq prokMSA_id:010900 AF099063 str. PSv29. 2.28.4.13.2.011 OTU 6 seqs prokMSA_id:010899 AF154102 clone GCA017. prokMSA_id:096870 AY211731 delta clone GoM GC185 510S5 prokMSA_id:096065 AY211737 delta clone GoM GC185 585S5 prokMSA_id:097912 AY211747 delta clone GoM GC234 069S5 prokMSA_id:097797 AY211750 delta clone GoM GC234 094S5 prokMSA_id:098645 AY211754 delta clone GoM GC234 613S5 2.28.4.13.2.012 OTU 2 seqs prokMSA_id:010897 U45991 Desulfonema ishimotoei str. from anaerobic mud of the intertidal prokMSA_id:010898 U45992 Desulfonema ishimotoei str. from anaerobic marine mud of Tokyo Bay 2.28.4.13.2.013 OTU 1 seq prokMSA_id:010895 AF146229 clone CLEAR-2. 2.28.4.13.2.014 OTU 2 seqs prokMSA_id:010892 AF141881 str. Hxd3. prokMSA_id:010894 Y17698 str. Hxd3. 2.28.4.13.2.015 OTU 2 seqs prokMSA_id:046724 AF058001 RFLP4 prokMSA_id:010893 U81720 clone vadinHA60. 2.28.4.13.2.016 OTU 2 seqs prokMSA_id:010891 AF141328 str. AK-01. prokMSA_id:079514 AY184360 Desulfobacillum aliphatovorans strain CV2803 2.28.4.13.2.017 OTU 1 seq prokMSA_id:010890 AJ006853 str. mXyS. 2.28.4.13.2.018 OTU 3 seqs prokMSA_id:010888 AJ237603 Desulfobacterium cetonicum str. oil recovery water DSM 7267. prokMSA_id:010887 M34407 Desulfosarcina variabilis str. 3 be 13 Montpellier DSM 2060 . prokMSA_id:010889 Y17286 str. oXyS1. 2.28.4.13.2.019 OTU 1 seq prokMSA_id:010886 AF121886 clone 2BP-6. 2.28.4.13.2.020 OTU 1 seq prokMSA_id:016305 AF424190 delta MERTZ_2CM_47 2.28.4.13.2.021 OTU 2 seqs prokMSA_id:059741 AY133455 clone OB3_207 prokMSA_id:059740 AY133456 clone OB3_40 2.28.4.13.2.022 OTU 3 seqs prokMSA_id:059737 AY133460 clone BB2_31 prokMSA_id:078733 AY177788 Desulfosarcina sp. clone SB1_34 prokMSA_id:078667 AY177791 Desulfosarcina sp. clone SB4_53 2.28.4.13.2.023 OTU 1 seq prokMSA_id:016656 AF424196 delta MERTZ_2CM_76 2.28.4.13.2.024 OTU 1 seq prokMSA_id:017347 AF424222 delta MERTZ_2CM_274 2.28.4.13.2.025 OTU 1 seq prokMSA_id:017424 AF286034 Saltmarsh clone LCP-80 2.28.4.13.2.026 OTU 1 seq prokMSA_id:017840 AF424434 MERTZ_21CM_126 2.28.4.13.2.027 OTU 1 seq prokMSA_id:020214 AF424210 delta MERTZ_2CM_176 2.28.4.13.2.028 OTU 1 seq prokMSA_id:059368 AY083026 delta clone SLM-DSBAC-81 2.28.4.13.2.029 OTU 4 seqs prokMSA_id:021892 AF408637 clone PCEDR694 prokMSA_id:024505 AF408638 clone PCEDR702 prokMSA_id:051360 AF408639 clone PCEDR13 prokMSA_id:039862 AF408640 clone PCEDR691 2.28.4.13.2.030 OTU 3 seqs prokMSA_id:023497 AJ347759 clone ST12-K34 prokMSA_id:021997 AJ347760 clone ST-12K15 prokMSA_id:083140 AY226216 clone ABBB-58 2.28.4.13.2.031 OTU 1 seq prokMSA_id:024313 AF424266 delta MERTZ_21CM_413 2.28.4.13.2.032 OTU 1 seq prokMSA_id:024746 AF424199 delta MERTZ_2CM_91 2.28.4.13.2.033 OTU 1 seq prokMSA_id:056090 AF361656 clone MN16BT2-18 2.28.4.13.2.034 OTU 1 seq prokMSA_id:027380 AF424188 delta MERTZ_2CM_37 2.28.4.13.2.035 OTU 2 seqs prokMSA_id:037303 AF224834 clone Car45fc prokMSA_id:028632 AF224837 clone Car58fc 2.28.4.13.2.037 OTU 1 seq prokMSA_id:055268 AY083013 delta clone SLM-DSN-4 2.28.4.13.2.038 OTU 1 seq prokMSA_id:034756 AF224843 clone Car113fc 2.28.4.13.2.039 OTU 1 seq prokMSA_id:035645 AF233491 delta DSS1 2.28.4.13.2.040 OTU 1 seq prokMSA_id:036809 AF259631 delta CtaxPhil-19 2.28.4.13.2.041 OTU 1 seq prokMSA_id:038237 AF224821 clone Car95fb 2.28.4.13.2.042 OTU 1 seq prokMSA_id:038404 AY050589 clone GOUTB1 2.28.4.13.2.043 OTU 1 seq prokMSA_id:038926 AB022613 delta SA56 2.28.4.13.2.047 OTU 4 seqs prokMSA_id:040264 AJ132804 delta NaphS2 prokMSA_id:010908 AJ241002 clone Sva0516. prokMSA_id:075902 AY164437 delta clone ULIB-46 prokMSA_id:082326 AY216442 clone KM95 2.28.4.13.2.048 OTU 1 seq prokMSA_id:041841 AF233497 delta DSS63 2.28.4.13.2.049 OTU 1 seq prokMSA_id:043483 AF424252 delta MERTZ_21CM_256 2.28.4.13.2.050 OTU 1 seq prokMSA_id:043896 AF424242 delta MERTZ_21CM_102 2.28.4.13.2.051 OTU 1 seq prokMSA_id:045971 AB077349 delta clone:TYM--12 2.28.4.13.2.052 OTU 1 seq prokMSA_id:047924 AF369724 delta clone 131 2.28.4.13.2.053 OTU 1 seq prokMSA_id:048164 AF233496 delta DSS57 2.28.4.13.2.054 OTU 1 seq prokMSA_id:057453 AJ441235 delta clone P. palm A 205 2.28.4.13.2.055 OTU 1 seq prokMSA_id:055564 AY082475 delta clone 44a-U1-12 2.28.4.13.2.056 OTU 1 seq prokMSA_id:057451 AJ441232 clone P. palm C 70 2.28.4.13.2.057 OTU 1 seq prokMSA_id:052092 AF084855 Bdellovibrio sp. AQ 2.28.4.13.2.058 OTU 1 seq prokMSA_id:052273 AF328214 clone KS78 2.28.4.13.2.059 OTU 1 seq prokMSA_id:063261 AF523959 clone FW113 2.28.4.13.2.060 OTU 3 seqs prokMSA_id:063566 AB069806 clone:CS8.26 prokMSA_id:070859 AF354163 delta isolate Eel-36e1G12 prokMSA_id:078353 AJ535248 delta clone Hyd89-63 2.28.4.13.2.061 OTU 1 seq prokMSA_id:063569 AB069803 clone:CS8.12 2.28.4.13.2.062 OTU 1 seq prokMSA_id:063585 AB069783 clone:CS2.2 2.28.4.13.2.063 OTU 1 seq prokMSA_id:065440 AJ430774 Delta EbS7 strain EbS7 2.28.4.13.2.064 OTU 1 seq prokMSA_id:066102 AB074950 delta clone:KU32 2.28.4.13.2.065 OTU 1 seq prokMSA_id:067851 AY082457 delta clone 44a-B1-10 2.28.4.13.2.067 OTU 4 seqs prokMSA_id:032846 AF354147 delta isolate Eel-BE1C3 prokMSA_id:068311 AF361654 clone MN16BT2-16 prokMSA_id:078056 AJ535247 delta clone Hyd89-22 prokMSA_id:039986 AY053490 AT425_EubD9 2.28.4.13.2.068 OTU 1 seq prokMSA_id:070385 AF420339 isolate a2b020 2.28.4.13.2.069 OTU 1 seq prokMSA_id:071994 AF321820 Desulfomusa hansenii 2.28.4.13.2.070 OTU 1 seq prokMSA_id:074021 AY083017 delta clone SLM-CP-116 2.28.4.13.2.071 OTU 1 seq prokMSA_id:075108 AY164350 delta clone ALIB-54 2.28.4.13.2.072 OTU 1 seq prokMSA_id:077960 AB089106 delta clone:Rs-K70 2.28.4.13.2.073 OTU 1 seq prokMSA_id:078292 AJ535244 delta clone Hyd24-20 2.28.4.13.2.074 OTU 1 seq prokMSA_id:079461 AB100007 sequences clone: IndB3-24 2.28.4.13.2.075 OTU 1 seq prokMSA_id:079885 AB094804 clone:OHKB2.18 2.28.4.13.2.076 OTU 1 seq prokMSA_id:081819 AB100495 clone: Rs-010 2.28.4.13.2.077 OTU 1 seq prokMSA_id:083552 AY226243 delta clone BBBB-33 2.28.4.13.2.078 OTU 2 seqs prokMSA_id:083626 AY226206 delta clone ABBB-39 prokMSA_id:085883 AY226236 delta clone BBBB-2 2.28.4.13.2.079 OTU 1 seq prokMSA_id:087255 AB110540 Desulfobacteraceae MSL71 2.28.4.13.2.080 OTU 1 seq prokMSA_id:088286 AY327182 clone ZB3 2.28.4.13.2.081 OTU 1 seq prokMSA_id:091622 AY344393 clone K2-30-4 2.28.4.13.2.082 OTU 1 seq prokMSA_id:092330 AY354162 clone pIR3BB09 2.28.4.13.2.083 OTU 1 seq prokMSA_id:093687 AY360500 clone BSB16-364m 2.28.4.13.2.084 OTU 1 seq prokMSA_id:095972 AY211736 delta clone GoM GC185 580S5 2.28.4.13.2.087 OTU 4 seqs prokMSA_id:096641 AY211734 delta clone GoM GC185 542S5 prokMSA_id:097878 AY211741 delta clone GoM GC234 014S5 prokMSA_id:098715 AY211758 delta clone GoM GC234 634S5 prokMSA_id:096463 AY211760 delta clone GoM GC234 676S5 2.28.4.13.2.088 OTU 1 seq prokMSA_id:096859 AY211751 delta clone GoM GC234 601S5 2.28.4.13.2.089 OTU 1 seq prokMSA_id:097755 AY211662 delta clone GoM GC185 524 2.28.4.13.2.090 OTU 1 seq prokMSA_id:098184 AY268891 Desulfofaba fastidiosa 2.28.4.13.2.091 OTU 1 seq prokMSA_id:098584 AY211764 delta clone GoM GC234 683S5 2.28.4.13.2.999 poor quality 236 seqs prokMSA_id:051057 AB062689 clone:DGGE band C prokMSA_id:020950 AB062690 clone:DGGE band D prokMSA_id:047619 AB062924 clone:DGGE band T-1 prokMSA_id:068480 AB081539 Oil-M2-6 prokMSA_id:068476 AB081543 Oil-MT3-10 prokMSA_id:071343 AB081548 Tol-MT1-4 prokMSA_id:068470 AB081550 oXy-K-7 prokMSA_id:055667 AB081551 oXy-MT3-8 prokMSA_id:068466 AB081553 pXy-K-13 prokMSA_id:082753 AB096628 clone: SUIYO-E15 prokMSA_id:092233 AB116923 clone:LB2 prokMSA_id:037127 AF121087 ODP8-10 prokMSA_id:033309 AF194205 delta n20d prokMSA_id:029069 AF211258 Desulfosarcina CE105 prokMSA_id:030091 AF211262 delta CE48 prokMSA_id:021659 AF211264 delta CE52 prokMSA_id:018079 AF223264 delta B2M26 prokMSA_id:019815 AF223276 delta B2M33 prokMSA_id:019591 AF224778 clone Car105fb prokMSA_id:029519 AF224810 clone Car81fb prokMSA_id:036421 AF224871 clone Car103rb prokMSA_id:024945 AF277546 ARCTIC.240 prokMSA_id:023913 AF321209 delta wpd_23 prokMSA_id:073678 AF354144 delta isolate Eel-BE1A5 prokMSA_id:072984 AF354145 delta isolate Eel-BE1B4 prokMSA_id:072104 AF354146 delta isolate Eel-BE1B6 prokMSA_id:073844 AF360632 Desulfosarcina sp. CME1 prokMSA_id:073053 AF360638 clone INOC-RNA20 prokMSA_id:068316 AF361645 clone MN16BT2-2 prokMSA_id:067907 AF365869 clone BT60PA9BG6 prokMSA_id:020279 AF441958 delta clone CD12B2 prokMSA_id:027692 AF441976 delta clone CD12G1 prokMSA_id:056678 AF530114 isolate MGP DGGE Band 17A prokMSA_id:061145 AF530116 isolate MGP DGGE Band 18A prokMSA_id:061142 AF530118 isolate MGP DGGE Band 19A prokMSA_id:059935 AF538273 delta DGGE gel band 7 prokMSA_id:059421 AF540848 clone DP11u8 prokMSA_id:070865 AF544954 delta clone 2-51 prokMSA_id:069537 AF544955 delta clone 2-16 prokMSA_id:069083 AF544956 delta clone 2-20 prokMSA_id:056411 AF544957 delta clone 2-22 prokMSA_id:072380 AF544958 delta clone 2-30 prokMSA_id:069705 AF544959 delta clone 2-45 prokMSA_id:070844 AJ296625 GR-296.II.7 clone GR-296.II.7 prokMSA_id:058351 AJ489402 clone NS-X11 prokMSA_id:084992 AJ495617 delta isolate SA-17 prokMSA_id:085768 AJ495643 delta isolate SA-47 prokMSA_id:057323 AJ518112 clone Mul01-17 prokMSA_id:057276 AJ518202 clone Mul2P1-49 prokMSA_id:056480 AJ518206 clone Mul2P1-53 prokMSA_id:057145 AJ518384 clone Neu4P1-65 prokMSA_id:057123 AJ518409 clone Neu4P2-88 prokMSA_id:057093 AJ518444 clone Neu4P3-58 prokMSA_id:057086 AJ518451 clone Neu4P3-66 prokMSA_id:057069 AJ518470 clone Neu4P3-94 prokMSA_id:057046 AJ518499 clone Qui2P2-16 prokMSA_id:056991 AJ518578 clone Qui4P2-36 prokMSA_id:056973 AJ518605 clone Qui4P2-76 prokMSA_id:056901 AJ518695 clone Sai4P1-78 prokMSA_id:056879 AJ518727 clone Sai4P3-48 prokMSA_id:056846 AJ518760 clone Sai4P3-ca prokMSA_id:052746 AY038556 delta clone CD1D11 prokMSA_id:060812 AY118142 Desulfobacterium sp. clone OR-M2 prokMSA_id:076416 AY164429 clone ULIB-105 prokMSA_id:095826 AY211756 delta clone GoM GC234 629S5 prokMSA_id:087057 AY261424 clone RFLP U124 prokMSA_id:087171 AY283098 delta clone NS-01 prokMSA_id:089240 AY311792 Dpcom94 prokMSA_id:088275 AY311794 Dpcom97 prokMSA_id:089078 AY316202 Dpcom123 prokMSA_id:091832 AY344440 clone K60-21 prokMSA_id:091716 AY344441 clone K60-13 prokMSA_id:093271 AY361944 clone P8-GEO-9 prokMSA_id:094307 AY374653 delta clone PI_6YF12 prokMSA_id:094460 AY374657 delta clone PI_6M43 prokMSA_id:094321 AY374658 delta clone PI_6H67 prokMSA_id:094694 AY374659 delta clone PI_6L13 prokMSA_id:094513 AY374662 delta clone PI_6M63 prokMSA_id:094849 AY374663 delta clone PI_6M87 prokMSA_id:094856 AY374667 delta clone PI_6H48 prokMSA_id:094729 AY374669 delta clone PI_6G17 prokMSA_id:095048 AY374675 delta clone PI_6D81 prokMSA_id:094973 AY374676 delta clone PI_6Q33 prokMSA_id:095082 AY374679 delta clone PI_6Q68 prokMSA_id:094373 AY374681 delta clone PI_6D85 prokMSA_id:095007 AY374686 delta clone PI_6SA03 prokMSA_id:095131 AY374687 delta clone PI_6BA01 prokMSA_id:094609 AY374691 delta clone PI_6BB03 prokMSA_id:094481 AY374693 delta clone PI_6AC07 prokMSA_id:094515 AY374694 delta clone PI_6SC10 prokMSA_id:095121 AY374696 delta clone PI_6BC02 prokMSA_id:094994 AY374699 delta clone PI_6BE09 prokMSA_id:094546 AY374704 delta clone PI_6BG11 prokMSA_id:094517 AY374709 delta clone PI_6UA05 prokMSA_id:095055 AY374710 delta clone PI_6RA12 prokMSA_id:094986 AY374711 delta clone PI_6VA03 prokMSA_id:094872 AY374713 delta clone PI_6VA09 prokMSA_id:094613 AY374715 delta clone PI_6RB10 prokMSA_id:094884 AY374718 delta clone PI_6UC05 prokMSA_id:094882 AY374720 delta clone PI_6VC04 prokMSA_id:094585 AY374722 delta clone PI_6UD06 prokMSA_id:094722 AY374724 delta clone PI_6TD01 prokMSA_id:094523 AY374725 delta clone PI_6VD01 prokMSA_id:094772 AY374729 delta clone PI_6UF06 prokMSA_id:094516 AY374731 delta clone PI_6TF05 prokMSA_id:094713 AY374732 delta clone PI_6UG06 prokMSA_id:094755 AY374733 delta clone PI_6UH03 prokMSA_id:094396 AY374734 delta clone PI_6RH10 prokMSA_id:094928 AY374739 delta clone PI_r102_c2 prokMSA_id:095075 AY374740 delta clone PI_r103_c2 prokMSA_id:094771 AY374742 delta clone PI_r108_c2 prokMSA_id:094943 AY374743 delta clone PI_r114_c2 prokMSA_id:094819 AY374744 delta clone PI_r119_c2 prokMSA_id:094876 AY374746 delta clone PI_r121_c2 prokMSA_id:094300 AY374750 delta clone PI_r145_c2 prokMSA_id:094618 AY374754 delta clone PI_r159_c2 prokMSA_id:094728 AY374755 delta clone PI_r161_c2 prokMSA_id:094326 AY374756 delta clone PI_r162_c2 prokMSA_id:094425 AY374758 delta clone PI_r172_c2 prokMSA_id:094654 AY374760 delta clone PI_r28_c4 prokMSA_id:095159 AY374762 delta clone PI_r42_c3 prokMSA_id:094318 AY374763 delta clone PI_r50_c3 prokMSA_id:094748 AY374764 delta clone PI_r54_c3 prokMSA_id:094818 AY374765 delta clone PI_r56_c3 prokMSA_id:094693 AY374767 delta clone PI_r61_c3 prokMSA_id:095165 AY374768 delta clone PI_r62_c3 prokMSA_id:094431 AY374769 delta clone PI_r63_c2 prokMSA_id:094341 AY374772 delta clone PI_r69_c2 prokMSA_id:094434 AY374776 delta clone PI_r95_c2 prokMSA_id:094814 AY374777 delta clone PI_r97_c2 prokMSA_id:094314 AY374779 delta clone PI_486_c7 prokMSA_id:094480 AY374781 delta clone PI_nn2_c2 prokMSA_id:094611 AY374782 delta clone PI_nn3_c2 prokMSA_id:094390 AY374783 delta clone PI_nn4_c2 prokMSA_id:094591 AY374785 delta clone PI_nr12_c6 prokMSA_id:094746 AY374786 delta clone PI_nr14_c7 prokMSA_id:094970 AY374789 delta clone PI_nr19_c7 prokMSA_id:094801 AY374790 delta clone PI_nr1_c42 prokMSA_id:094908 AY374791 delta clone PI_nr23_c19 prokMSA_id:094397 AY374792 delta clone PI_nr2_c11 prokMSA_id:095033 AY374795 delta clone PI_nr5_c25 prokMSA_id:094562 AY374797 delta clone PI_nr86_c2 prokMSA_id:095170 AY374798 delta clone PI_r105_c3 prokMSA_id:094500 AY374801 delta clone PI_r12_c7 prokMSA_id:095133 AY374802 delta clone PI_r175_c3 prokMSA_id:094661 AY374803 delta clone PI_r18_c6 prokMSA_id:095150 AY374806 delta clone PI_r5_c19 prokMSA_id:094774 AY374808 delta clone PI_r87_c3 prokMSA_id:094745 AY374809 delta clone PI_r91_c3 prokMSA_id:094290 AY374812 delta clone PI_r9_c9 prokMSA_id:094598 AY374813 delta clone PI_srb6EH05 prokMSA_id:095176 AY374814 delta clone PI_srb6XA12 prokMSA_id:094886 AY374815 delta clone PI_srb6XB12 prokMSA_id:094421 AY374818 delta clone PI_6EC11 prokMSA_id:094967 AY374819 delta clone PI_6EG01 prokMSA_id:094753 AY374822 delta clone PI_6FF10 prokMSA_id:095134 AY374825 delta clone PI_6YH04 prokMSA_id:094479 AY374827 delta clone PI_6H73 prokMSA_id:094556 AY374828 delta clone PI_6H43 prokMSA_id:094435 AY374829 delta clone PI_6M59 prokMSA_id:095000 AY374838 delta clone PI_6O16 prokMSA_id:094940 AY374839 delta clone PI_6G01 prokMSA_id:094985 AY374840 delta clone PI_6N18 prokMSA_id:095038 AY374841 delta clone PI_6N19 prokMSA_id:094948 AY374843 delta clone PI_6N41 prokMSA_id:094815 AY374844 delta clone PI_6G41 prokMSA_id:094997 AY374846 delta clone PI_6N74 prokMSA_id:094409 AY374849 delta clone PI_6G35 prokMSA_id:094522 AY374850 delta clone PI_6G36 prokMSA_id:094650 AY374851 delta clone PI_6Q36 prokMSA_id:094539 AY374855 delta clone PI_6G47 prokMSA_id:094384 AY374858 delta clone PI_6SA12 prokMSA_id:094992 AY374859 delta clone PI_6BA01_B02 prokMSA_id:094647 AY374860 delta clone PI_6BB03_D05 prokMSA_id:095083 AY374862 delta clone PI_6AC02 prokMSA_id:094560 AY374865 delta clone PI_6BC06 prokMSA_id:094565 AY374867 delta clone PI_6AD02 prokMSA_id:094785 AY374868 delta clone PI_6BD01_H02 prokMSA_id:094915 AY374869 delta clone PI_6BD10 prokMSA_id:094454 AY374872 delta clone PI_6AF12 prokMSA_id:094743 AY374874 delta clone PI_6AG06 prokMSA_id:094333 AY374877 delta clone PI_6BG05 prokMSA_id:094531 AY374880 delta clone PI_6UA07 prokMSA_id:094354 AY374881 delta clone PI_6RA09 prokMSA_id:095004 AY374883 delta clone PI_6VA11 prokMSA_id:094320 AY374884 delta clone PI_6UB01 prokMSA_id:094361 AY374887 delta clone PI_6VB02 prokMSA_id:094441 AY374888 delta clone PI_6TB06 prokMSA_id:094428 AY374889 delta clone PI_6TB07 prokMSA_id:094482 AY374890 delta clone PI_6RC02 prokMSA_id:094389 AY374893 delta clone PI_6TC02 prokMSA_id:094568 AY374897 delta clone PI_6UE12 prokMSA_id:095094 AY374900 delta clone PI_6RF05 prokMSA_id:094684 AY374901 delta clone PI_6RF12 prokMSA_id:094536 AY374904 delta clone PI_6VG02 prokMSA_id:095001 AY374906 delta clone PI_6UH06 prokMSA_id:094593 AY374908 delta clone PI_6TH05 prokMSA_id:094473 AY374909 delta clone PI_6VH05 prokMSA_id:094770 AY374916 delta clone PI_nr24_c4 prokMSA_id:094671 AY374917 delta clone PI_nr25_c8 prokMSA_id:094456 AY374918 delta clone PI_nr26_c4 prokMSA_id:095102 AY374922 delta clone PI_nr6_c2 prokMSA_id:094530 AY374924 delta clone PI_nr8_c2 prokMSA_id:094752 AY374926 delta clone PI_r101_c2 prokMSA_id:094805 AY374927 delta clone PI_r109_c2 prokMSA_id:095040 AY374929 delta clone PI_r112_c2 prokMSA_id:094445 AY374930 delta clone PI_r115_c2 prokMSA_id:094688 AY374931 delta clone PI_r11_c7 prokMSA_id:094846 AY374932 delta clone PI_r123_c2 prokMSA_id:094924 AY374934 delta clone PI_r131_c2 prokMSA_id:095036 AY374935 delta clone PI_r136_c2 prokMSA_id:094325 AY374937 delta clone PI_r142_c2 prokMSA_id:095010 AY374939 delta clone PI_r147_c2 prokMSA_id:094920 AY374941 delta clone PI_r150_c2 prokMSA_id:094450 AY374946 delta clone PI_r158_c2 prokMSA_id:094403 AY374947 delta clone PI_r160_c2 prokMSA_id:094526 AY374948 delta clone PI_r164_c2 prokMSA_id:094864 AY374949 delta clone PI_r167_c2 prokMSA_id:094448 AY374951 delta clone PI_r170_c2 prokMSA_id:095166 AY374952 delta clone PI_r171_c2 prokMSA_id:094520 AY374953 delta clone PI_r176_c2 prokMSA_id:094955 AY374954 delta clone PI_r17_c5 prokMSA_id:094378 AY374959 delta clone PI_r30_c4 prokMSA_id:094701 AY374963 delta clone PI_r38_c3 prokMSA_id:094932 AY374964 delta clone PI_r39_c3 prokMSA_id:094877 AY374965 delta clone PI_r40_c3 prokMSA_id:095122 AY374968 delta clone PI_r48_c3 prokMSA_id:095132 AY374970 delta clone PI_r52_c3 prokMSA_id:094477 AY374971 delta clone PI_r53_c3 prokMSA_id:095031 AY374977 delta clone PI_r76_c2 prokMSA_id:094895 AY374978 delta clone PI_r80_c2 prokMSA_id:094843 AY374979 delta clone PI_r82_c2 prokMSA_id:010885 M26632 Desulfosarcina variabilis str. 3 be 13 Montpellier DSM 2060 . prokMSA_id:010896 U43640 clone EH-2. prokMSA_id:044148 U85479 sulfate-reducing 4D19 from an uncultivated organism prokMSA_id:054301 Z82971 sp. clone group T14C 2.28.4.13.3 ENVIRONMENTAL_CLONE_G24 1 seq 2.28.4.13.3.999 poor quality 1 seq prokMSA_id:010910 X91276 Bangombe boreholes at depth of 5-105m clone G24. 2.28.4.13.4 ENVIRONMENTAL_CLONE_PAD25 1 seq 2.28.4.13.4.999 poor quality 1 seq prokMSA_id:010911 D26212 soil from paddy field clone PAD25. 2.28.4.13.5 ENVIRONMENTAL_CLONE_PAD40 1 seq 2.28.4.13.5.999 poor quality 1 seq prokMSA_id:010912 D26227 soil from paddy field clone PAD40. 2.28.4.13.6 DBM.VACUOLATUM_SUBGROUP 3 seqs 2.28.4.13.6.999 poor quality 3 seqs prokMSA_id:010914 M34406 Desulfobacterium niacini DSM 2650. prokMSA_id:010913 M34408 Desulfobacterium vacuolatum DSM 3385. prokMSA_id:010915 M34409 Desulfobacterium autotrophicum DSM 3382 . 2.28.4.13.7 DSB.POSTGATEI_SUBGROUP 126 seqs 2.28.4.13.7.001 OTU 1 seq prokMSA_id:010943 AF136008 Desulfobacterium BSv41 str. BSv41. 2.28.4.13.7.002 OTU 1 seq prokMSA_id:010942 AF029042 clone SB-9. 2.28.4.13.7.003 OTU 1 seq prokMSA_id:010941 U85471 Desulfobacterium BG18 str. BG18. 2.28.4.13.7.004 OTU 1 seq prokMSA_id:010940 X99637 Desulfospira joergensenii str. B331 DSM 10085 . 2.28.4.13.7.005 OTU 1 seq prokMSA_id:010939 AB015244 str. JTB133. 2.28.4.13.7.006 OTU 1 seq prokMSA_id:010938 AF099056 Desulfobacterium LSv25 str. LSv25. 2.28.4.13.7.007 OTU 1 seq prokMSA_id:010937 U51845 Desulfobacterium niacini str. PM4. 2.28.4.13.7.008 OTU 4 seqs prokMSA_id:010936 AJ237606 Desulfobacterium phenolicum str. marine mud DSM 3384. prokMSA_id:067542 AJ441316 Desulfobacula toluolica strain DSM 7467 prokMSA_id:059730 AY133461 clone BB2_115 prokMSA_id:010933 X70953 Desulfobacula toluolica str. Tol2 DSM 7467. 2.28.4.13.7.009 OTU 1 seq prokMSA_id:010935 U85474 Desulfobacterium BG33 str. BG33. 2.28.4.13.7.010 OTU 1 seq prokMSA_id:010934 U85470 Desulfobotulus BG14 str. BG14. 2.28.4.13.7.011 OTU 7 seqs prokMSA_id:010929 AF177429 str. S2651. prokMSA_id:031826 AF233370 Desulfotignum balticum prokMSA_id:051719 AF418176 Desulfotignum balticum DSM 7044 prokMSA_id:059113 AF420288 Desulfotignum phosphitoxidans strain FiPS3 prokMSA_id:059114 AF420289 Desulfotignum phosphitoxidans strain FiPS5 prokMSA_id:052280 AJ132719 CHA3-100 clone CHA3-100 prokMSA_id:040669 AJ132720 CHA3-118 clone CHA3-118 2.28.4.13.7.012 OTU 1 seq prokMSA_id:010928 AF099054 Desulfobacter ASv25 str. ASv25. 2.28.4.13.7.013 OTU 1 seq prokMSA_id:010927 U51844 unnamed organism. 2.28.4.13.7.014 OTU 1 seq prokMSA_id:010926 Y14745 Desulfobacter halotolerans. 2.28.4.13.7.015 OTU 1 seq prokMSA_id:010925 U85476 Desulfobacter BG72 str. BG72. 2.28.4.13.7.016 OTU 2 seqs prokMSA_id:010923 U85469 Desulfobacter BG8 str. BG8. prokMSA_id:010924 U85472 Desulfobacter BG23 str. BG23. 2.28.4.13.7.017 OTU 1 seq prokMSA_id:010922 U12254 Desulfobacter vibrioformis str. B54 DSMZ 8776 . 2.28.4.13.7.018 OTU 1 seq prokMSA_id:059732 AY133462 clone BB2_41 2.28.4.13.7.019 OTU 1 seq prokMSA_id:024315 AF121090 ODPB-B7 2.28.4.13.7.020 OTU 2 seqs prokMSA_id:028971 AF249834 Delta S2450 prokMSA_id:074171 AF418175 Desulfobacter curvatus DSM 3379 2.28.4.13.7.021 OTU 2 seqs prokMSA_id:070182 AF420349 isolate CS_B008 prokMSA_id:086333 AY197382 clone B01R011 2.28.4.13.7.022 OTU 1 seq prokMSA_id:032393 AF230098 delta clone Sva0605 2.28.4.13.7.023 OTU 1 seq prokMSA_id:047150 AF418180 Desulfobacter postgatei DSM 2034 2.28.4.13.7.024 OTU 1 seq prokMSA_id:047877 AF418178 Desulfobacterium vacuolatum DSM 3385 2.28.4.13.7.025 OTU 1 seq prokMSA_id:048770 AF211271 delta MT22 2.28.4.13.7.026 OTU 1 seq prokMSA_id:051710 AY038554 delta clone CD4E2 2.28.4.13.7.027 OTU 1 seq prokMSA_id:063583 AB069786 clone:CS2.17 2.28.4.13.7.028 OTU 1 seq prokMSA_id:066101 AB074951 delta clone:KB14 2.28.4.13.7.029 OTU 1 seq prokMSA_id:067544 AJ441315 Desulfobacter latus strain DSM 3381 2.28.4.13.7.030 OTU 1 seq prokMSA_id:067833 AY082473 delta clone 44a-U1-1 2.28.4.13.7.031 OTU 1 seq prokMSA_id:071601 AF418177 Desulfobacterium autotrophicum DSM 3382 2.28.4.13.7.032 OTU 5 seqs prokMSA_id:075582 AY164377 delta clone BLIB-48 prokMSA_id:075765 AY164399 delta clone DLIB-24 prokMSA_id:074887 AY164444 delta clone ULIB-64 prokMSA_id:086086 AY226209 delta clone ABBB-41 prokMSA_id:086256 AY226310 delta clone DBBB-72 2.28.4.13.7.033 OTU 1 seq prokMSA_id:075234 AY164448 delta clone ULIB-68 2.28.4.13.7.034 OTU 1 seq prokMSA_id:075494 AY164400 delta clone DLIB-25 2.28.4.13.7.035 OTU 1 seq prokMSA_id:075686 AY164352 delta clone ALIB-61 2.28.4.13.7.036 OTU 1 seq prokMSA_id:076450 AY164381 delta clone BLIB-64 2.28.4.13.7.037 OTU 1 seq prokMSA_id:076643 AY164405 delta clone DLIB-31 2.28.4.13.7.038 OTU 1 seq prokMSA_id:078421 AY177799 Desulfobacteraceae 2.28.4.13.7.039 OTU 1 seq prokMSA_id:078513 AY177795 Desulfobacula sp. clone SB1_49 2.28.4.13.7.040 OTU 1 seq prokMSA_id:078718 AY177803 Desulfobacula sp. clone SB4_98 2.28.4.13.7.041 OTU 1 seq prokMSA_id:078986 AY177800 Desulfobacula sp. clone SB2_56 2.28.4.13.7.042 OTU 2 seqs prokMSA_id:086388 AY197376 clone B01R004 prokMSA_id:084285 AY197413 clone B04R008 2.28.4.13.7.043 OTU 1 seq prokMSA_id:091102 AY344396 clone L10-58 2.28.4.13.7.044 OTU 1 seq prokMSA_id:091866 AY344397 clone L9-70 2.28.4.13.7.045 OTU 1 seq prokMSA_id:093235 AY329117 delta clone M3+C17 2.28.4.13.7.046 OTU 1 seq prokMSA_id:093326 AY329136 delta clone M4+C11 2.28.4.13.7.047 OTU 1 seq prokMSA_id:093331 AY329095 delta clone M1+BC5 2.28.4.13.7.048 OTU 1 seq prokMSA_id:093352 AY329121 delta clone M3+BC3 2.28.4.13.7.049 OTU 1 seq prokMSA_id:093736 AY329160 delta clone M5+C40 2.28.4.13.7.050 OTU 2 seqs prokMSA_id:094156 AY329118 delta clone M3+BC10 prokMSA_id:093963 AY329122 delta clone M3+BC6 2.28.4.13.7.051 OTU 1 seq prokMSA_id:094113 AY329130 delta clone M3-C5 2.28.4.13.7.999 poor quality 57 seqs prokMSA_id:068482 AB081538 Oil-M2-5 prokMSA_id:068473 AB081546 Tol-M2-2 prokMSA_id:074710 AF211269 delta MT21 prokMSA_id:045364 AF295112 marine anaerobic 90dCB36 prokMSA_id:043171 AF424192 delta MERTZ_2CM_51 prokMSA_id:066344 AF508195 clone CN MLS Band1_1 prokMSA_id:059925 AF538278 delta DGGE gel band 5 prokMSA_id:018820 AJ296609 Desulfobacter postgatei clone GR-B1-2-6 prokMSA_id:083939 AJ495606 delta isolate SA-6 prokMSA_id:086568 AJ495664 delta isolate SB-18 prokMSA_id:085872 AY197389 clone B01R024 prokMSA_id:086082 AY197397 clone B02R015 prokMSA_id:085876 AY197402 clone B02R021 prokMSA_id:093387 AY329088 delta clone M1+BC6 prokMSA_id:093872 AY329090 delta clone M1+BC13 prokMSA_id:093691 AY329092 delta clone M1+BC17 prokMSA_id:093340 AY329096 delta clone M1+BC9 prokMSA_id:093289 AY329098 delta clone M1+BC2 prokMSA_id:093400 AY329099 delta clone M1-BC9 prokMSA_id:094108 AY329100 delta clone M1-BC1 prokMSA_id:093939 AY329101 delta clone M1-BC11 prokMSA_id:093238 AY329102 delta clone M1-BC4 prokMSA_id:093565 AY329104 delta clone M1-BC7 prokMSA_id:094215 AY329107 delta clone M2+BC5 prokMSA_id:093569 AY329112 delta clone M2-BC23 prokMSA_id:093972 AY329114 delta clone M2-BC17 prokMSA_id:093192 AY329115 delta clone M2-BC21 prokMSA_id:093405 AY329116 delta clone M2-BC7 prokMSA_id:093372 AY329120 delta clone M3+BC2 prokMSA_id:094160 AY329123 delta clone M3+BC8 prokMSA_id:093934 AY329163 delta clone M5-C50 prokMSA_id:093969 AY329164 delta clone M5-C44 prokMSA_id:091054 AY330651 delta clone RISAM1+B prokMSA_id:091059 AY330652 delta clone RISAM1-B prokMSA_id:091770 AY330653 delta clone RISAM2+B prokMSA_id:091061 AY330654 delta clone RISAM2-B prokMSA_id:091623 AY330655 delta clone RISAM3+B prokMSA_id:091850 AY330656 delta clone RISAM3-B prokMSA_id:091192 AY330658 delta clone RISAM5-B prokMSA_id:095112 AY374655 delta clone PI_6H66 prokMSA_id:094695 AY374690 delta clone PI_6AB09 prokMSA_id:094644 AY374712 delta clone PI_6TA05 prokMSA_id:094527 AY374714 delta clone PI_6RB03 prokMSA_id:095146 AY374716 delta clone PI_6UB12 prokMSA_id:094756 AY374728 delta clone PI_6TE11 prokMSA_id:094371 AY374800 delta clone PI_r128_c2 prokMSA_id:094751 AY374817 delta clone PI_srb6XH02 prokMSA_id:010932 L40787 Desulfobacter sp. prokMSA_id:010921 M26633 Desulfobacter postgatei str. 2 ac 9 DSM 2034 . prokMSA_id:010918 M34412 Desulfobacter hydrogenophilus str. AcRS1 DSM 3380 . prokMSA_id:010920 M34413 Desulfobacter curvatus str. AcRM3 DSM 3379 . prokMSA_id:010916 M34414 Desulfobacter latus str. AcRS2 DSM 3381 . prokMSA_id:010919 M34415 Desulfobacter sp. str. 3ac10 DSM 2035. prokMSA_id:010917 M34416 Desulfobacter sp. str. 4ac11 DSM 2057. prokMSA_id:010930 U46508 clone DBAC9. prokMSA_id:010931 U46509 clone DBAC14. prokMSA_id:010944 Z69308 str. s4. 2.28.5 EPSILON_SUBDIVISION 1366 seqs 2.28.5.1 HELICOBACTER_AND_RELATIVES 437 seqs 2.28.5.1.1 HLB.PYLORI_SUBGROUP 428 seqs 2.28.5.1.1.007 OTU 9 seqs prokMSA_id:098484 AY394473 Helicobacter pylori isolate C45 prokMSA_id:095887 AY394474 Helicobacter pylori isolate C5 prokMSA_id:010982 L36141 Helicobacter pullorum NCTC 12824 . prokMSA_id:010950 L36142 Helicobacter pullorum NCTC 12825. prokMSA_id:011067 L36143 Helicobacter pullorum NCTC 12826. prokMSA_id:011044 L36144 Helicobacter pullorum NCTC 12827. prokMSA_id:011078 L36145 Helicobacter pullorum str. UB151. prokMSA_id:011011 L36146 Helicobacter pullorum str. UB3166. prokMSA_id:011025 L36147 Helicobacter pullorum str. UB3659. 2.28.5.1.1.010 OTU 1 seq prokMSA_id:011061 Z25747 Helicobacter mustelae str. Fox R85-13-6 NCTC 12198 . 2.28.5.1.1.012 OTU 1 seq prokMSA_id:011047 U96300 Helicobacter 'ATCC 43968' ATCC 43968. 2.28.5.1.1.013 OTU 2 seqs prokMSA_id:011045 AF047847 Helicobacter bilis str. MIT 97-6456. prokMSA_id:011046 AF047850 Helicobacter pullorum str. MIT 92-7458. 2.28.5.1.1.014 OTU 1 seq prokMSA_id:011042 U07573 Helicobacter hepaticus str. Fox Hh-1 ATCC 51449. 2.28.5.1.1.015 OTU 3 seqs prokMSA_id:011040 AF010140 Helicobacter muridarum str. UNSW 1.7st. prokMSA_id:011041 AF013464 Helicobacter muridarum str. UNSW 1.6cae. prokMSA_id:025488 AF302104 Helicobacter muridarum 2.28.5.1.1.020 OTU 20 seqs prokMSA_id:011034 AF058768 Helicobacter heilmannii str. 1. prokMSA_id:011027 AF103879 Helicobacter felis str. 937-12. prokMSA_id:011028 AF103880 Helicobacter felis str. 390-9. prokMSA_id:011029 AF103881 Helicobacter felis str. 144-10. prokMSA_id:011030 AF103882 Helicobacter felis str. 1136-7. prokMSA_id:011031 AF103883 Helicobacter bizzozeronii str. 865-2. prokMSA_id:011000 AF142152 Helicobacter 'pig C2'. prokMSA_id:047191 AF302107 Helicobacter bizzozeronii prokMSA_id:064323 AF506775 Helicobacter heilmannii strain C2S prokMSA_id:064319 AF506778 Helicobacter heilmannii strain C4E prokMSA_id:064317 AF506779 Helicobacter heilmannii strain C4S prokMSA_id:064312 AF506786 Helicobacter heilmannii strain HU2 prokMSA_id:010999 L10080 "Gastrospirillum hominis" str. 2. prokMSA_id:010967 U51870 Helicobacter felis str. Dog-1. prokMSA_id:011032 U51871 Helicobacter felis str. Dog-2 Eaton 2301. prokMSA_id:011033 U51872 Helicobacter felis str. Dog-3 Eaton 1602. prokMSA_id:011026 U89351 Helicobacter salomonis str. Inkinen CCUG 37845 . prokMSA_id:010966 Y09404 Helicobacter bizzozeronii CCUG 35045 . prokMSA_id:010968 Y09405 Helicobacter salomonis str. 4. prokMSA_id:010969 Y18028 Helicobacter heilmannii str. AF53. 2.28.5.1.1.021 OTU 1 seq prokMSA_id:011019 AF142584 Helicobacter 'liver 2' str. liver 2. 2.28.5.1.1.023 OTU 73 seqs prokMSA_id:010957 AE000511 Helicobacter pylori str. 26695 =rrnB . prokMSA_id:010949 AE000511 Helicobacter pylori str. 26695 = . prokMSA_id:010974 AF057163 Helicobacter sp. prokMSA_id:010975 AF142583 Helicobacter 'liver 1' str. liver 1. prokMSA_id:011085 AF142585 Helicobacter 'liver 3' str. liver 3. prokMSA_id:010959 AF142586 Helicobacter 'liver 4' str. liver 4. prokMSA_id:046392 AF214507 Helicobacter pylori isolate IHD-7 prokMSA_id:036597 AF214508 Helicobacter pylori isolate IHD-11 prokMSA_id:052265 AF214509 Helicobacter pylori isolate IHD-32 prokMSA_id:044189 AF214510 Helicobacter pylori isolate IHD-35 prokMSA_id:031663 AF214516 Helicobacter pylori isolate GB-9 prokMSA_id:019515 AF214517 Helicobacter pylori isolate GB-16 prokMSA_id:023373 AF214518 Helicobacter pylori isolate GB-38 prokMSA_id:017482 AF277832 Helicobacter sp. LU1 prokMSA_id:031729 AF292376 Helicobacter sp. 'MIT 99-5660-6' prokMSA_id:074354 AF292377 Helicobacter sp. 'MIT 99-5657' prokMSA_id:072792 AF292378 Helicobacter cetorum strain MIT 99-5656 prokMSA_id:036842 AF297630 Helicobacter pylori SA-3 prokMSA_id:030475 AF297631 Helicobacter pylori SA-4 prokMSA_id:031915 AF302106 Helicobacter pylori prokMSA_id:069227 AF317325 Helicobacter tursiopsae strain P13 prokMSA_id:031459 AF348617 Helicobacter nemestrinae prokMSA_id:036626 AF361935 Helicobacter pylori prokMSA_id:027532 AF363064 Helicobacter nemestrinae strain ATCC49396 prokMSA_id:024309 AF455130 Helicobacter cetorum MIT 00-7128 prokMSA_id:064304 AF506794 Helicobacter heilmannii strain TD1 prokMSA_id:061186 AF512997 Helicobacter pylori isolate 181 complete prokMSA_id:055890 AF535194 Helicobacter pylori strain Sal05 prokMSA_id:056665 AF535195 Helicobacter pylori strain Sal10 prokMSA_id:057710 AF535196 Helicobacter pylori strain Lit69 prokMSA_id:057709 AF535197 Helicobacter pylori strain Lit76 prokMSA_id:057708 AF535198 Helicobacter pylori strain Lit81 prokMSA_id:057707 AF535199 Helicobacter pylori strain Hpk5 prokMSA_id:057706 AF535200 Helicobacter pylori strain Ind75 prokMSA_id:027906 AJ310143 Helicobacter pylori strain BO417 prokMSA_id:019346 AJ310144 Helicobacter pylori strain BO418 prokMSA_id:068375 AY062898 Helicobacter pylori strain 108 prokMSA_id:068374 AY062899 Helicobacter pylori strain 109 prokMSA_id:077094 AY143175 Helicobacter cetorum MIT 00-5903 prokMSA_id:076377 AY143177 Helicobacter cetorum MIT 01-6202 prokMSA_id:075781 AY155586 Helicobacter pylori strain 1200 prokMSA_id:074909 AY155587 Helicobacter pylori strain 1205 prokMSA_id:088248 AY304551 Helicobacter pylori strain LPB-5V prokMSA_id:089207 AY304569 Helicobacter pylori strain LPB-1B prokMSA_id:089046 AY304570 Helicobacter pylori strain LPB-3B prokMSA_id:088172 AY304571 Helicobacter pylori strain LPB-64B prokMSA_id:093356 AY364437 Helicobacter pylori strain LPB 582-99 prokMSA_id:093211 AY364438 Helicobacter pylori strain LPB 473-00 prokMSA_id:093553 AY364439 Helicobacter pylori strain LPB 427-01 prokMSA_id:094158 AY364440 Helicobacter pylori strain LPB 10-02 prokMSA_id:093843 AY366421 Helicobacter pylori strain SS1 prokMSA_id:093274 AY366422 Helicobacter pylori strain DA prokMSA_id:094236 AY366424 Helicobacter pylori strain PA prokMSA_id:097297 AY394476 Helicobacter pylori isolate C51 prokMSA_id:010952 M88157 Helicobacter pylori ATCC 43504 . prokMSA_id:010973 U00679 Helicobacter pylori str. 85D08 ATCC 51407. prokMSA_id:010958 U01328 Helicobacter pylori str. MC123. prokMSA_id:011056 U01329 Helicobacter pylori str. MC238. prokMSA_id:010946 U01330 Helicobacter pylori ATCC 43504 . prokMSA_id:011018 U01331 Helicobacter pylori str. MC937. prokMSA_id:011084 U01332 Helicobacter pylori str. MC903. prokMSA_id:011017 U08906 Helicobacter pylori str. D01. prokMSA_id:011080 X67854 Helicobacter nemestrinae str. T81213-NTB ATCC 49396 . prokMSA_id:011058 Z25736 Helicobacter pylori str. SH2. prokMSA_id:010972 Z25737 Helicobacter pylori str. SH3. prokMSA_id:010971 Z25738 Helicobacter pylori str. SH4. prokMSA_id:011038 Z25739 Helicobacter pylori str. L2. prokMSA_id:011048 Z25740 Helicobacter pylori str. L13. prokMSA_id:011013 Z25741 Helicobacter pylori NCTC 11637. prokMSA_id:011086 Z25742 Helicobacter pylori NCTC 11638. prokMSA_id:011055 Z25743 Helicobacter pylori NCTC 11639. prokMSA_id:010955 Z25744 Helicobacter pylori NCTC 11916. prokMSA_id:010962 Z25748 Helicobacter pylori str. MC19. 2.28.5.1.1.024 OTU 2 seqs prokMSA_id:011015 AB006147 Helicobacter suncus str. Kaz-1. prokMSA_id:011016 AB006148 Helicobacter suncus str. Kaz-2. 2.28.5.1.1.025 OTU 1 seq prokMSA_id:011010 U07574 Helicobacter hepaticus str. Fox Hh-2 ATCC 51448 . 2.28.5.1.1.026 OTU 24 seqs prokMSA_id:011003 AF127028 Helicobacter suis. prokMSA_id:011004 AF142146 Helicobacter 'pig A2'. prokMSA_id:011005 AF142147 Helicobacter 'pig B1'. prokMSA_id:011006 AF142148 Helicobacter 'pig B6'. prokMSA_id:011007 AF142149 Helicobacter 'pig D7'. prokMSA_id:011008 AF142150 Helicobacter 'pig E1'. prokMSA_id:011009 AF142151 Helicobacter 'pig F8'. prokMSA_id:035646 AF327026 Helicobacter sp. MN-4 prokMSA_id:064328 AF506769 Helicobacter heilmannii strain HU5 prokMSA_id:064325 AF506771 Helicobacter heilmannii strain HU3 prokMSA_id:064324 AF506773 Helicobacter heilmannii strain HU4 prokMSA_id:072724 AF506780 Helicobacter heilmannii strain CM1 prokMSA_id:055918 AF506781 Helicobacter heilmannii strain CM2 prokMSA_id:064314 AF506782 Helicobacter heilmannii strain MM1 prokMSA_id:064316 AF506783 Helicobacter heilmannii strain MM2 prokMSA_id:064315 AF506784 Helicobacter heilmannii strain HU1 prokMSA_id:073122 AF506787 Helicobacter heilmannii strain P1 prokMSA_id:064306 AF506788 Helicobacter heilmannii strain P2 prokMSA_id:064311 AF506789 Helicobacter heilmannii strain P3 prokMSA_id:071558 AF506790 Helicobacter heilmannii strain P4 prokMSA_id:064310 AF506791 Helicobacter heilmannii strain P5 prokMSA_id:064305 AF506792 Helicobacter heilmannii strain RM2 prokMSA_id:064307 AF506793 Helicobacter heilmannii strain RM1 prokMSA_id:011002 L10079 "Gastrospirillum hominis" str. clone G1A1; isolate 1. 2.28.5.1.1.027 OTU 1 seq prokMSA_id:010998 U07575 Helicobacter hepaticus str. Fox Hh-3 ATCC 51450. 2.28.5.1.1.028 OTU 4 seqs prokMSA_id:052884 AF284754 Helicobacter apodemus prokMSA_id:034757 AY009129 Helicobacter apodemus strain YMRC 000216 prokMSA_id:037836 AY009130 Helicobacter apodemus strain YMRC 00419 prokMSA_id:010992 U96299 Helicobacter 'Eaton 94-536' str. Eaton 94-536. 2.28.5.1.1.029 OTU 8 seqs prokMSA_id:010985 AF000221 Helicobacter 'Robertson ANO1' str. Robertson ANO1. prokMSA_id:010986 AF000222 Helicobacter 'Robertson ANO2' str. Robertson ANO2. prokMSA_id:010987 AF000223 Helicobacter 'Robertson ANO3' str. Robertson ANO3. prokMSA_id:010988 AF000224 Helicobacter 'Robertson ANO4' str. Robertson ANO4. prokMSA_id:016734 AF371869 clone p-4283-4Wa3 prokMSA_id:010983 U96296 Helicobacter rodentium str. MIT 95-1707 ATCC 700285 . prokMSA_id:010990 U96297 Helicobacter rodentium str. MIT 96-1312. prokMSA_id:010991 U96298 Helicobacter 'MIT 95-2011' str. MIT 95-2011. 2.28.5.1.1.030 OTU 4 seqs prokMSA_id:047790 AF072334 Helicobacter mesocricetorum prokMSA_id:010989 AF072471 Helicobacter mesocricetus str. MU97-1514. prokMSA_id:036424 AY009131 Helicobacter sp. YMRC 000427 prokMSA_id:031862 AY009132 Helicobacter sp. YMRC 000428 2.28.5.1.1.031 OTU 1 seq prokMSA_id:010984 AJ224539 str. clone koll6. 2.28.5.1.1.032 OTU 2 seqs prokMSA_id:010980 AF127027 Helicobacter bovis. prokMSA_id:048754 AF317470 Candidatus Helicobacter bovis strain Toro3A 2.28.5.1.1.035 OTU 1 seq prokMSA_id:010978 AB015569 str. BD5-13. 2.28.5.1.1.036 OTU 1 seq prokMSA_id:010977 AF047623 clone SRang2.3. 2.28.5.1.1.037 OTU 3 seqs prokMSA_id:089285 AE017147 Helicobacter hepaticus ATCC 51449 section 4 of 6 of the complete genome prokMSA_id:050875 AF302103 Helicobacter hepaticus prokMSA_id:010976 L39122 Helicobacter hepaticus str. FRED1. 2.28.5.1.1.038 OTU 1 seq prokMSA_id:010964 U65103 Helicobacter trogontum str. LRB 8581. 2.28.5.1.1.039 OTU 5 seqs prokMSA_id:037859 AF207739 Helicobacter cinaedi strain CCUG 33804 prokMSA_id:041542 AJ249858 Helicobacter sp. isolate 964 prokMSA_id:074512 AJ249859 Helicobacter sp. isolate 11934 prokMSA_id:019951 AJ249860 Helicobacter sp. isolate 13526 prokMSA_id:010960 X81028 Helicobacter sp. 2.28.5.1.1.041 OTU 3 seqs prokMSA_id:050310 AF302105 Helicobacter pametensis prokMSA_id:010951 M88142 Helicobacter pametensis str. Seymour B15 CCUG 29259. prokMSA_id:011050 U46129 Helicobacter cholecystus str. Hkb-1 ATCC 700242 . 2.28.5.1.1.042 OTU 1 seq prokMSA_id:010947 AF142802 clone ACE-27. 2.28.5.1.1.043 OTU 1 seq prokMSA_id:016301 AF107494 Helicobacter sp. 'MIT 97-6194-5' 2.28.5.1.1.044 OTU 8 seqs prokMSA_id:030515 AF246984 Helicobacter winghamensis NLEP 97-1090 prokMSA_id:049528 AF246985 Helicobacter winghamensis NLEP 98-2019 prokMSA_id:016388 AF246986 Helicobacter winghamensis NLEP 98-202 prokMSA_id:019560 AF246987 Helicobacter winghamensis NLEP 98-2021 prokMSA_id:052966 AF246988 Helicobacter winghamensis NLEP 99-4873 prokMSA_id:020336 AF363062 Helicobacter winghamensis strain NLEP 97-1611 prokMSA_id:019502 AF363063 Helicobacter winghamensis strain NLEP 98-0305 prokMSA_id:060773 AF497811 Helicobacter sp. J2103 2.28.5.1.1.045 OTU 1 seq prokMSA_id:016854 AF419697 C1_B036 2.28.5.1.1.046 OTU 2 seqs prokMSA_id:039356 AF262037 Helicobacter canadensis prokMSA_id:017771 AF334681 Helicobacter cf. pullorum strain W.Tee-Cro 2.28.5.1.1.047 OTU 1 seq prokMSA_id:018419 AF468748 epsilon clone 33-PA36B00 2.28.5.1.1.048 OTU 3 seqs prokMSA_id:074305 AF225550 Helicobacter sp. 'MIT 94-022' prokMSA_id:028676 AF264783 Helicobacter sp. w-06 prokMSA_id:081888 AF354055 Helicobacter sp. WYS-2001 2.28.5.1.1.049 OTU 1 seq prokMSA_id:026677 AF237612 Helicobacter sp. Wee Tee 2.28.5.1.1.050 OTU 2 seqs prokMSA_id:034144 AF333338 Helicobacter sp. MIT 99-5501 prokMSA_id:027055 AF333339 Helicobacter sp. MIT 99-5504 2.28.5.1.1.052 OTU 1 seq prokMSA_id:029721 AF424440 candidate division OP11 MERTZ_2CM_228 2.28.5.1.1.053 OTU 1 seq prokMSA_id:029793 AF225547 Helicobacter sp. 'Flexispira taxon 3' 2.28.5.1.1.054 OTU 1 seq prokMSA_id:029977 AF327024 Helicobacter sp. MN-2 2.28.5.1.1.055 OTU 2 seqs prokMSA_id:036371 AF333341 Helicobacter sp. MIT 98-6070 prokMSA_id:031244 AF336947 Helicobacter sp. MIT 98-1705 2.28.5.1.1.056 OTU 2 seqs prokMSA_id:031647 AF424244 delta MERTZ_21CM_12 prokMSA_id:044299 AF424451 candidate division OP11 MERTZ_21CM_151 2.28.5.1.1.057 OTU 2 seqs prokMSA_id:034981 AB030590 epsilon 1070 prokMSA_id:066099 AB074953 epsilon clone:KB36 2.28.5.1.1.060 OTU 1 seq prokMSA_id:037024 AF292381 Helicobacter sp. 'Solnick 9A1-T71' 2.28.5.1.1.061 OTU 1 seq prokMSA_id:039617 AF316120 Cilia-associated respiratory B6 2.28.5.1.1.062 OTU 1 seq prokMSA_id:039964 AF292380 Helicobacter sp. 'MIT 99-5659-3' 2.28.5.1.1.063 OTU 1 seq prokMSA_id:041903 AF327025 Helicobacter sp. MN-3 2.28.5.1.1.064 OTU 1 seq prokMSA_id:042376 AF455131 Helicobacter sp. MIT 00-7129 2.28.5.1.1.065 OTU 1 seq prokMSA_id:042811 AF424437 candidate division OP11 MERTZ_2CM_126 2.28.5.1.1.066 OTU 1 seq prokMSA_id:043302 AF327023 Helicobacter sp. MN-1 2.28.5.1.1.067 OTU 1 seq prokMSA_id:043306 AF424450 candidate division OP11 MERTZ_21CM_120 2.28.5.1.1.068 OTU 1 seq prokMSA_id:057731 AY075122 marine Vent 11 2.28.5.1.1.069 OTU 1 seq prokMSA_id:044674 AF424454 candidate division OP11 MERTZ_21CM_336 2.28.5.1.1.070 OTU 1 seq prokMSA_id:044846 AF424439 candidate division OP11 MERTZ_2CM_219 2.28.5.1.1.071 OTU 2 seqs prokMSA_id:057737 AY075120 marine Vent 14 prokMSA_id:057736 AY075121 marine Vent 10 2.28.5.1.1.074 OTU 1 seq prokMSA_id:048289 AF297868 Helicobacter aurati complete 2.28.5.1.1.075 OTU 1 seq prokMSA_id:057466 AJ441213 epsilon clone P. palm C/A 26 2.28.5.1.1.076 OTU 67 seqs prokMSA_id:011023 AF023862 Helicobacter sp. prokMSA_id:011021 AF034135 Flexispira rappini str. FH 9702248. prokMSA_id:011071 AF047843 Helicobacter bilis str. MIT 92-7660. prokMSA_id:011072 AF047844 Helicobacter bilis str. MIT 93-3055. prokMSA_id:011073 AF047845 Helicobacter bilis str. MIT 93-4659. prokMSA_id:011074 AF047846 Helicobacter bilis str. MIT 97-6452. prokMSA_id:023629 AF047851 Helicobacter sp. 'Flexispira taxon 8' strain ATCC 49317 prokMSA_id:019975 AF054570 Helicobacter bilis strain HRI3caefr prokMSA_id:046045 AF054571 Helicobacter bilis strain HRI6caefr prokMSA_id:047586 AF054572 Helicobacter bilis strain HRI7stomfr prokMSA_id:019124 AF054573 Helicobacter sp. UNSW3.11cae prokMSA_id:019165 AF054574 Helicobacter sp. ABHU3cae prokMSA_id:034354 AF054575 Helicobacter sp. ABHU4stomsp prokMSA_id:052155 AF054576 Helicobacter sp. UNSW3SBsp prokMSA_id:070293 AF054577 Helicobacter sp. UNSW1.7col prokMSA_id:048498 AF054578 Helicobacter sp. UNSW1.7sp prokMSA_id:070187 AF054579 Helicobacter sp. UNSWMCSp1 prokMSA_id:028993 AF061104 Helicobacter typhlonicus prokMSA_id:029878 AF072333 Helicobacter sp. 'hamster B' prokMSA_id:011070 AF116577 Helicobacter VA str. VA. prokMSA_id:011022 AF118017 Flexispira rappini str. H1353. prokMSA_id:011069 AF118807 Flexispira CDC-H69 str. CDC-H69. prokMSA_id:049662 AF127912 Helicobacter sp. prokMSA_id:011063 AF142062 Helicobacter 'feline isolate'. prokMSA_id:011064 AF177475 Helicobacter canis str. MIT 98-152. prokMSA_id:027482 AF207737 Helicobacter cinaedi strain ADN 0413 prokMSA_id:020805 AF207738 Helicobacter cinaedi strain CCUG 33887 prokMSA_id:028994 AF225548 Helicobacter sp. 'Flexispira taxon 4' prokMSA_id:032695 AF225549 Helicobacter sp. 'Flexispira taxon 8' prokMSA_id:039557 AF286052 Helicobacter rappini W.Tee-Bat prokMSA_id:029701 AF286053 Helicobacter rappini W.Tee-Yu prokMSA_id:029786 AF302762 Flexispira rappini and intervening prokMSA_id:026749 AF320621 Helicobacter sp. MIT 98-5357 complete prokMSA_id:032900 AF336948 Helicobacter sp. MIT 95-234-6 prokMSA_id:017350 AF348748 Helicobacter cinaedi strain CCUG 18818 prokMSA_id:070150 AF362544 Helicobacter sp. GOSH prokMSA_id:020816 AF396078 Helicobacter cinaedi isolate 30327 prokMSA_id:030026 AF396079 Helicobacter cinaedi isolate 30365 prokMSA_id:053074 AF396080 Helicobacter cinaedi isolate 30893 prokMSA_id:049270 AF396081 Helicobacter cinaedi isolate 31111 prokMSA_id:044759 AF396082 Helicobacter cinaedi isolate 30314 prokMSA_id:024587 AF426158 Helicobacter cinaedi isolate 30527 prokMSA_id:060772 AF497807 Flexispira rappini prokMSA_id:056169 AF497810 Helicobacter cinaedi prokMSA_id:063388 AF522184 Helicobacter sp. MO prokMSA_id:072874 AJ007931 Helicobacter hepaticus prokMSA_id:047656 AJ249852 Helicobacter sp. isolate 2634 prokMSA_id:070775 AJ249853 Helicobacter sp. isolate 2404 prokMSA_id:071514 AJ249854 Helicobacter sp. isolate 384 prokMSA_id:026344 AJ249855 Helicobacter sp. isolate 1199 prokMSA_id:038896 AJ249856 Helicobacter sp. isolate 3028 prokMSA_id:026909 AJ249857 Helicobacter sp. isolate 1058 prokMSA_id:071120 AY034818 Helicobacter rappini strain 2 SU prokMSA_id:074357 AY034819 Helicobacter rappini strain 3 SU prokMSA_id:047556 AY034820 Helicobacter rappini strain H 95 S prokMSA_id:040721 AY034821 Helicobacter rappini strain H 157 S prokMSA_id:081166 AY203899 Helicobacter sp. MIT 01-5529B prokMSA_id:011087 L12765 Flexispira rappini str. DBS59. prokMSA_id:011062 L13464 Helicobacter canis NCTC 12739 . prokMSA_id:011060 U18766 Helicobacter bilis str. Hb1 ATCC 51630 . prokMSA_id:011068 U18767 Helicobacter bilis str. Hb2 ATCC 51631. prokMSA_id:011020 U18768 Helicobacter bilis str. Hb3 ATCC 51632. prokMSA_id:011053 U44756 Helicobacter sp. prokMSA_id:028820 U51873 Helicobacter bilis prokMSA_id:010979 U51874 Helicobacter sp. str. Dog-4 Eaton 1302. prokMSA_id:019959 U65102 Helicobacter canis prokMSA_id:011001 Z25746 Flexispira rappini NCTC 12461. 2.28.5.1.1.077 OTU 1 seq prokMSA_id:049735 AF333340 Helicobacter sp. MIT 99-5507 2.28.5.1.1.078 OTU 2 seqs prokMSA_id:068999 AF225546 Helicobacter sp. 'Flexispira taxon 2' prokMSA_id:049754 AJ011431 Helicobacter sp. strain MZ 640285 2.28.5.1.1.079 OTU 1 seq prokMSA_id:049918 AY034817 Helicobacter rappini strain 1 SU 2.28.5.1.1.080 OTU 1 seq prokMSA_id:050239 AF468751 epsilon clone 33-PA27B00 2.28.5.1.1.081 OTU 1 seq prokMSA_id:051512 AF446321 FL13B05 2.28.5.1.1.082 OTU 1 seq prokMSA_id:062659 AF507903 clone ML617.5J-47 2.28.5.1.1.083 OTU 1 seq prokMSA_id:063202 AF524025 clone FW9 2.28.5.1.1.084 OTU 1 seq prokMSA_id:065698 AF507683 soil clone S0212 2.28.5.1.1.085 OTU 1 seq prokMSA_id:065700 AF507682 soil clone C011 2.28.5.1.1.086 OTU 1 seq prokMSA_id:067288 AF495401 clone F10.40 2.28.5.1.1.087 OTU 1 seq prokMSA_id:069782 AF302108 Helicobacter sp. HC15880 2.28.5.1.1.088 OTU 1 seq prokMSA_id:072292 AF506785 Helicobacter heilmannii strain WD1 2.28.5.1.1.089 OTU 3 seqs prokMSA_id:072309 AF348745 Helicobacter cinaedi strain ATCC 35683 prokMSA_id:073501 AF348746 Helicobacter fennelliae strain NCTC 11612 prokMSA_id:073597 AF348747 Helicobacter fennelliae strain LMG 7546 2.28.5.1.1.090 OTU 1 seq prokMSA_id:074066 AF289171 clone PRD01b011B 2.28.5.1.1.091 OTU 1 seq prokMSA_id:074682 AF277833 Helicobacter sp. LU2 2.28.5.1.1.092 OTU 1 seq prokMSA_id:077122 AY164452 clone ULIB-74 2.28.5.1.1.093 OTU 1 seq prokMSA_id:079187 AY188311 clone KD4-23 2.28.5.1.1.094 OTU 3 seqs prokMSA_id:080050 AY193146 candidate division OD1 clone BMS2 prokMSA_id:079791 AY193147 candidate division OD1 clone BMS3 prokMSA_id:079934 AY193148 candidate division OD1 clone BMS4 2.28.5.1.1.095 OTU 1 seq prokMSA_id:079933 AY193192 candidate division OD1 clone DA32 2.28.5.1.1.096 OTU 1 seq prokMSA_id:079958 AY193145 candidate division OD1 clone BMS1 2.28.5.1.1.097 OTU 1 seq prokMSA_id:080044 AY193194 candidate division OD1 clone SRC19 2.28.5.1.1.098 OTU 1 seq prokMSA_id:080053 AY193202 candidate division OD1 clone DA17 2.28.5.1.1.099 OTU 2 seqs prokMSA_id:080150 AY193197 candidate division OD1 clone DA85 prokMSA_id:080238 AY193203 candidate division OD1 clone DA35 2.28.5.1.1.100 OTU 1 seq prokMSA_id:080314 AY193126 candidate division OD1 clone Bol14 2.28.5.1.1.101 OTU 1 seq prokMSA_id:080419 AY193185 candidate division OD1 clone DA23 2.28.5.1.1.102 OTU 1 seq prokMSA_id:080450 AY193161 candidate division OD1 clone BMS43 2.28.5.1.1.103 OTU 1 seq prokMSA_id:080654 AY193293 candidate division OD1 clone SRC61 2.28.5.1.1.104 OTU 2 seqs prokMSA_id:080951 AY193133 candidate division OD1 clone Bol79 prokMSA_id:080737 AY193137 candidate division OD1 clone Bol93 2.28.5.1.1.105 OTU 1 seq prokMSA_id:080768 AY193158 candidate division OD1 clone BTM34 2.28.5.1.1.106 OTU 1 seq prokMSA_id:081282 AY203901 Helicobacter sp. MIT 01-6242 2.28.5.1.1.107 OTU 2 seqs prokMSA_id:081382 AY203902 Helicobacter sp. MIT 01-5923 prokMSA_id:082083 AY203903 Helicobacter sp. MIT 01-5924 2.28.5.1.1.108 OTU 2 seqs prokMSA_id:082242 AY203898 Helicobacter sp. MIT 01-5529A prokMSA_id:082216 AY203900 Helicobacter sp. MIT 02-5519C 2.28.5.1.1.109 OTU 1 seq prokMSA_id:085929 AY280658 clone G4-2 2.28.5.1.1.110 OTU 1 seq prokMSA_id:086636 AY226255 division OP11 clone BBBB-52 2.28.5.1.1.111 OTU 1 seq prokMSA_id:090430 AB113182 epsilon clone:pCIRB-69 2.28.5.1.1.999 poor quality 101 seqs prokMSA_id:011075 AF047848 Flexispira rappini str. MIT 97-6457. prokMSA_id:011076 AF047849 Flexispira rappini str. MIT 97-6459. prokMSA_id:010995 AF058769 Helicobacter heilmannii str. 2. prokMSA_id:010996 AF058770 Helicobacter heilmannii str. 3. prokMSA_id:011037 AF058771 Helicobacter heilmannii str. 4. prokMSA_id:045380 AF128631 soil C011 prokMSA_id:041180 AF141390 prokMSA_id:011035 AF145733 Helicobacter 'liver 7' str. liver 7. prokMSA_id:031406 AF214511 Helicobacter pylori isolate GB-3 prokMSA_id:018530 AF214512 Helicobacter pylori isolate GB-4 prokMSA_id:021422 AF214513 Helicobacter pylori isolate GB-11 prokMSA_id:039552 AF214514 Helicobacter pylori isolate GB-27 prokMSA_id:030728 AF214515 Helicobacter pylori isolate GB-17 prokMSA_id:073138 AF292379 Helicobacter sp. 'MIT 99-5665' prokMSA_id:068885 AF446322 FL13C08 prokMSA_id:052402 AF446329 FL07H04 prokMSA_id:041396 AF446330 FL13B04 prokMSA_id:071602 AF506770 Helicobacter heilmannii strain AD1 prokMSA_id:072960 AF506772 Helicobacter heilmannii strain BC1 prokMSA_id:071921 AF506774 Helicobacter heilmannii strain C2E prokMSA_id:072879 AF506776 Helicobacter heilmannii strain C3E prokMSA_id:073646 AF506777 Helicobacter heilmannii strain C3S prokMSA_id:071718 AF506795 Helicobacter heilmannii strain T1 prokMSA_id:065670 AF507717 soil clone S13 prokMSA_id:055587 AF540827 clone DP10u13 prokMSA_id:059436 AF540828 clone DP11u4 prokMSA_id:056576 AF544892 epsilon prokMSA_id:070675 AH001595 Campylobacter pylori 5443 ribosoaml 5' segment prokMSA_id:029280 AJ308389 clone L10-17 prokMSA_id:066463 AJ314572 DGGE band 3 prokMSA_id:066461 AJ314576 DGGE band 7 prokMSA_id:073516 AJ516949 Helicobacter sp. clone 2 H1/98 prokMSA_id:057524 AJ516950 Helicobacter sp. clone 1 H2/98 prokMSA_id:057522 AJ516951 Helicobacter sp. clone 3 H2/98 prokMSA_id:055394 AJ516952 Helicobacter sp. clone 5 H3/98 prokMSA_id:074319 AJ516953 Helicobacter sp. clone 6 H3/98 prokMSA_id:057518 AJ516954 Helicobacter sp. clone 4 H4/98 prokMSA_id:077024 AY164418 clone DLIB-74 prokMSA_id:076676 AY168743 clone HC-33 prokMSA_id:079733 AY193093 clone PLTA6 prokMSA_id:080817 AY193102 clone DA39 prokMSA_id:080629 AY193108 clone DA93 prokMSA_id:080592 AY193118 clone SRC34 prokMSA_id:087824 AY293519 clone FL13B12 prokMSA_id:089932 AY304552 Helicobacter pylori strain LPB-7V prokMSA_id:090258 AY304553 Helicobacter pylori strain LPB-10V prokMSA_id:090657 AY304554 Helicobacter pylori strain LPB-17V prokMSA_id:090079 AY304555 Helicobacter pylori strain LPB-18V prokMSA_id:089568 AY304556 Helicobacter pylori strain LPB-25V prokMSA_id:089382 AY304557 Helicobacter pylori strain LPB-28V prokMSA_id:090306 AY304558 Helicobacter pylori strain LPB-34V prokMSA_id:089272 AY304559 Helicobacter pylori strain LPB-35V prokMSA_id:090582 AY304560 Helicobacter pylori strain LPB-36V prokMSA_id:088294 AY304561 Helicobacter pylori strain LPB-39V prokMSA_id:090325 AY304562 Helicobacter pylori strain LPB-43V prokMSA_id:088692 AY304563 Helicobacter pylori strain LPB-44V prokMSA_id:089400 AY304564 Helicobacter pylori strain LPB-46V prokMSA_id:090658 AY304565 Helicobacter pylori strain LPB-50V prokMSA_id:088331 AY304566 Helicobacter pylori strain LPB-53V prokMSA_id:089455 AY304567 Helicobacter pylori strain LPB-61V prokMSA_id:089636 AY304568 Helicobacter pylori strain LPB-63V prokMSA_id:093625 AY361920 clone P8-GEN-8 prokMSA_id:094130 AY366423 Helicobacter pylori strain MB prokMSA_id:098418 AY426557 Helicobacter sp. clone M28 prokMSA_id:095314 AY426558 Helicobacter sp. clone M36 prokMSA_id:095781 AY426559 Helicobacter sp. clone M37 prokMSA_id:097254 AY426560 Helicobacter sp. clone M38 prokMSA_id:010981 L14634 Helicobacter sp. CCUG 29176. prokMSA_id:011057 M35048 Helicobacter mustelae str. Fox R85-13-6 ATCC 43772 . prokMSA_id:011036 M37643 Helicobacter felis str. DS3. prokMSA_id:011059 M55303 Helicobacter pylori str. HPF234. prokMSA_id:010997 M55304 Helicobacter pylori str. HPF240. prokMSA_id:011024 M55305 Helicobacter pylori str. HPS8. prokMSA_id:011043 M55306 Helicobacter pylori str. HPF155. prokMSA_id:010970 M55307 Helicobacter pylori str. HPC7058. prokMSA_id:010954 M55308 Helicobacter pylori str. HPC5790. prokMSA_id:010948 M55309 Helicobacter pylori str. HP11638. prokMSA_id:010963 M55310 Helicobacter mustelae str. Fox R85-13-6 NCTC 12198 . prokMSA_id:010994 M57398 Helicobacter felis str. CS1 ATCC 49179 . prokMSA_id:011039 M80205 Helicobacter muridarum str. ST1 ATCC 49282 . prokMSA_id:011066 M86748 Helicobacter pylori str. HPA5443. prokMSA_id:010945 M88137 Flexispira rappini str. 2011; SDSU 84-3345 NADC 1893 . prokMSA_id:011089 M88138 Flexispira rappini NADC 1937. prokMSA_id:011081 M88139 Helicobacter sp. str. Seymour 10B CCUG 29256 . prokMSA_id:011079 M88140 Helicobacter pametensis str. Seymour B12 CCUG 29257. prokMSA_id:010956 M88141 Helicobacter pametensis str. Seymour B13 CCUG 29258. prokMSA_id:010965 M88144 Helicobacter sp. str. Seymour B52 CCUG 29561. prokMSA_id:011065 M88145 Helicobacter pametensis str. Seymour B7 CCUG 29253. prokMSA_id:010961 M88146 Helicobacter sp. str. Seymour B8 CCUG 29254. prokMSA_id:011083 M88147 Helicobacter pametensis str. Seymour B9 CCUG 29255 . prokMSA_id:011077 M88148 Helicobacter acinonychis str. Eaton 90-119-3 CCUG 29263 . prokMSA_id:011051 M88149 Helicobacter acinonychis str. Eaton 90-1908-3 ATCC 51104. prokMSA_id:011052 M88150 Helicobacter cinaedi CCUG 18818 . prokMSA_id:010993 M88151 Helicobacter sp. str. CLO 3 CCUG 14564. prokMSA_id:011054 M88152 Helicobacter sp. str. 91-266-11 Fox. prokMSA_id:011082 M88153 Helicobacter sp. str. 91-269-21 Fox. prokMSA_id:011012 M88154 Helicobacter fennelliae CCUG 18820 . prokMSA_id:010953 M88155 Helicobacter pametensis str. Seymour M17 CCUG 29260. prokMSA_id:011014 M88156 Helicobacter mustelae str. 91-292-E1A Fox. prokMSA_id:011049 M92320 Helicobacter pylori str. 5443. prokMSA_id:011088 U04344 Helicobacter canis NCTC 12220. 2.28.5.1.2 WLN.SUCCINOGENES_SUBGROUP 9 seqs 2.28.5.1.2.003 OTU 7 seqs prokMSA_id:029152 AF273252 Wolinella succinogenes prokMSA_id:042495 AF297632 Candidatus Wolinella africanus SA-5 prokMSA_id:047305 AF297633 Candidatus Wolinella africanus SA-7 prokMSA_id:026106 AF463534 Wolinella succinogenes prokMSA_id:093521 BX571657 Wolinella succinogenes complete genome; segment 1/7 prokMSA_id:093903 NC_005090 Wolinella succinogenes complete genome prokMSA_id:011091 Z25745 Wolinella succinogenes str. 602W FDC NCTC 11488. 2.28.5.1.2.999 poor quality 2 seqs prokMSA_id:011092 M26636 Wolinella succinogenes str. 602W FDC ATCC 29543 . prokMSA_id:011090 M88159 Wolinella succinogenes str. 602W FDC ATCC 29543 . 2.28.5.2 THIOVULUM_GROUP 463 seqs 2.28.5.2.1 PELE'S_VENTS_CLONES_SUBGROUP 44 seqs 2.28.5.2.1.001 OTU 9 seqs prokMSA_id:081592 AB088431 Sulfromonas thioautotrophicum strain:OK10 prokMSA_id:081472 AB088432 Sulfromonas thioautotrophicum strain:OK5 prokMSA_id:011102 U15100 Pele's Vents clone PVB_7. prokMSA_id:011096 U15101 Pele's Vents clone PVB_15. prokMSA_id:011093 U15102 Pele's Vents clone PVB_63. prokMSA_id:011101 U15103 Pele's Vents clone PVB_10. prokMSA_id:011099 U15104 Pele's Vents clone PVB_12. prokMSA_id:011095 U15105 Pele's Vents clone PVB_55. prokMSA_id:011094 U15107 Pele's Vents clone PVB_32. 2.28.5.2.1.002 OTU 1 seq prokMSA_id:011100 AF068806 VC2.1 Bac32 complete 2.28.5.2.1.003 OTU 1 seq prokMSA_id:011098 AF142923 Thiovulum PENDANT-10. 2.28.5.2.1.004 OTU 1 seq prokMSA_id:011097 AF142931 clone PENDANT-19. 2.28.5.2.1.005 OTU 1 seq prokMSA_id:020884 AF468775 epsilon clone 33-FL98B00 2.28.5.2.1.006 OTU 1 seq prokMSA_id:033082 AF424297 epsilon MERTZ_2CM_162 2.28.5.2.1.007 OTU 1 seq prokMSA_id:034712 AF468776 epsilon clone 33-FL99B00 2.28.5.2.1.008 OTU 1 seq prokMSA_id:036248 AF468769 epsilon clone 33-FL98B99 2.28.5.2.1.009 OTU 1 seq prokMSA_id:038197 AF367496 epsilon VC1.2-cl51 2.28.5.2.1.010 OTU 1 seq prokMSA_id:039099 AF424298 epsilon MERTZ_2CM_264 2.28.5.2.1.011 OTU 1 seq prokMSA_id:040001 AF468715 epsilon clone 33-PA61B98 2.28.5.2.1.012 OTU 1 seq prokMSA_id:043869 AF367495 epsilon VC1.2-cl50 2.28.5.2.1.013 OTU 1 seq prokMSA_id:048010 AF355050 epsilon Arctic96B-13 2.28.5.2.1.014 OTU 1 seq prokMSA_id:057486 AJ441198 epsilon clone P. palm C 43 2.28.5.2.1.015 OTU 1 seq prokMSA_id:057484 AJ441200 epsilon clone P. palm C 92 2.28.5.2.1.016 OTU 1 seq prokMSA_id:057476 AJ441201 epsilon clone P. palm C 73 2.28.5.2.1.017 OTU 1 seq prokMSA_id:073836 AF367490 epsilon VC1.2-cl26 2.28.5.2.1.018 OTU 1 seq prokMSA_id:070730 AF367492 epsilon VC1.2-cl32 2.28.5.2.1.019 OTU 1 seq prokMSA_id:074233 AF367498 epsilon VC1.2-cl68 2.28.5.2.1.020 OTU 1 seq prokMSA_id:081052 AB091302 epsilon strain:2-37-10% 2.28.5.2.1.021 OTU 1 seq prokMSA_id:081747 AB091295 epsilon strain:GO25-1 2.28.5.2.1.022 OTU 1 seq prokMSA_id:082461 AY218555 clone KD1-140 2.28.5.2.1.023 OTU 1 seq prokMSA_id:088624 AB113176 epsilon clone:pCIRB-7 2.28.5.2.1.024 OTU 1 seq prokMSA_id:089353 AB113165 epsilon clone:pCIRB-D 2.28.5.2.1.025 OTU 1 seq prokMSA_id:090153 AB113190 epsilon clone:pCIRB-79 2.28.5.2.1.026 OTU 1 seq prokMSA_id:096188 AJ575964 epsilon clone T3-Hot3-727 2.28.5.2.1.027 OTU 1 seq prokMSA_id:097072 AJ575993 epsilon clone T6-Ph07-916 2.28.5.2.1.028 OTU 1 seq prokMSA_id:097077 AY225615 epsilon clone AT-cs10 2.28.5.2.1.029 OTU 1 seq prokMSA_id:098417 AJ575998 epsilon clone T6-Ph07-962 2.28.5.2.1.030 OTU 1 seq prokMSA_id:098692 AY225613 epsilon clone AT-pp6 2.28.5.2.1.999 poor quality 6 seqs prokMSA_id:017723 AF111864 UPB C3 prokMSA_id:040378 AF296194 SY6-21 prokMSA_id:070203 AF367501 epsilon VC1.2-clD prokMSA_id:035998 AF468714 epsilon clone 33-PA78B98 prokMSA_id:032860 AF468765 epsilon clone 33-FL80B99 prokMSA_id:061159 AF530099 isolate MGP DGGE Band 8/9 2.28.5.2.2 TMS.DENITRIFICANS_SUBGROUP 83 seqs 2.28.5.2.2.001 OTU 1 seq prokMSA_id:011113 AB015257 str. JTB146. 2.28.5.2.2.002 OTU 1 seq prokMSA_id:011112 AF047627 clone SRang1.23. 2.28.5.2.2.003 OTU 1 seq prokMSA_id:011111 AF047625 clone SRang1.25. 2.28.5.2.2.004 OTU 1 seq prokMSA_id:011109 AF121884 clone Phenol-1. 2.28.5.2.2.005 OTU 1 seq prokMSA_id:011108 L40808 Thiomicrospira denitrificans DSM 1251 . 2.28.5.2.2.006 OTU 1 seq prokMSA_id:011104 AB013263 str. NKB11. 2.28.5.2.2.007 OTU 1 seq prokMSA_id:011103 U15106 Pele's Vents clone PVB_73. 2.28.5.2.2.008 OTU 1 seq prokMSA_id:055238 AF420352 isolate CS_B016 2.28.5.2.2.009 OTU 1 seq prokMSA_id:019590 AF367494 epsilon VC1.2-cl49 2.28.5.2.2.010 OTU 1 seq prokMSA_id:020387 AF468713 epsilon clone 33-PA65B98 2.28.5.2.2.011 OTU 1 seq prokMSA_id:029761 AF224795 clone Car2a 2.28.5.2.2.012 OTU 2 seqs prokMSA_id:038225 AF468716 epsilon clone 33-PA75B98 prokMSA_id:031948 AF468759 epsilon clone 33-FL14B98 2.28.5.2.2.013 OTU 1 seq prokMSA_id:032993 AF468782 epsilon clone 33-FL51B00 2.28.5.2.2.014 OTU 1 seq prokMSA_id:036811 AF468746 epsilon clone 33-PA19B00 2.28.5.2.2.015 OTU 1 seq prokMSA_id:037490 AF468743 epsilon clone 33-PA11B00 2.28.5.2.2.016 OTU 1 seq prokMSA_id:038258 AF121091 ODPB-B9 2.28.5.2.2.017 OTU 1 seq prokMSA_id:038390 AF468757 epsilon clone 33-FL33B98 2.28.5.2.2.018 OTU 1 seq prokMSA_id:040382 AF121088 ODPB-B3 2.28.5.2.2.019 OTU 1 seq prokMSA_id:041411 AF468758 epsilon clone 33-FL40B98 2.28.5.2.2.020 OTU 1 seq prokMSA_id:057735 AY075129 marine Vent 8 2.28.5.2.2.021 OTU 1 seq prokMSA_id:045923 AF468742 epsilon clone 33-PA8B00 2.28.5.2.2.022 OTU 1 seq prokMSA_id:057482 AJ441199 epsilon clone P. palm C/A 78 2.28.5.2.2.023 OTU 1 seq prokMSA_id:051546 AF468736 epsilon clone 33-PA46B00 2.28.5.2.2.024 OTU 1 seq prokMSA_id:052864 AF207534 Environmental clone CC-9 2.28.5.2.2.025 OTU 1 seq prokMSA_id:062395 AF529118 epsilon clone FTLM173 2.28.5.2.2.026 OTU 1 seq prokMSA_id:066666 AY090124 epsilon clone IAFDn27 2.28.5.2.2.027 OTU 4 seqs prokMSA_id:076202 AY164436 epsilon clone ULIB-35 prokMSA_id:078019 AY171381 clone s12 prokMSA_id:086080 AY197379 clone B01R008 prokMSA_id:098689 AY211658 epsilon clone GoM GC185 507E 2.28.5.2.2.028 OTU 1 seq prokMSA_id:076667 AY164438 clone ULIB-48 2.28.5.2.2.029 OTU 1 seq prokMSA_id:077767 AY171362 clone s50 2.28.5.2.2.030 OTU 2 seqs prokMSA_id:081292 AB091301 epsilon strain:1-37-1% prokMSA_id:090190 AB113194 Epsilon Ep-2-37-10% 2.28.5.2.2.031 OTU 1 seq prokMSA_id:081811 AY218595 clone KD2-83 2.28.5.2.2.032 OTU 1 seq prokMSA_id:082108 AY218592 clone KD2-76 2.28.5.2.2.033 OTU 1 seq prokMSA_id:082215 AY216438 clone KM51 2.28.5.2.2.034 OTU 1 seq prokMSA_id:083322 AY208817 epsilon clone LKC2.270-64 2.28.5.2.2.035 OTU 1 seq prokMSA_id:083900 AY274848 Bacteroidetes clone CF16 2.28.5.2.2.036 OTU 1 seq prokMSA_id:083992 AY261819 epsilon clone PD-UASB-61 2.28.5.2.2.037 OTU 3 seqs prokMSA_id:093762 AY191482 epsilon clone LKC1.114_7 prokMSA_id:093280 AY191483 epsilon clone LKC1.114_8 prokMSA_id:084532 AY208808 epsilon clone LKC2.57-11 2.28.5.2.2.038 OTU 1 seq prokMSA_id:086690 AY274859 Bacteroidetes clone CF61 2.28.5.2.2.039 OTU 1 seq prokMSA_id:088065 AB113163 epsilon clone:pCIRB-A 2.28.5.2.2.040 OTU 1 seq prokMSA_id:089286 AB113173 epsilon clone:pCIRB-P 2.28.5.2.2.041 OTU 1 seq prokMSA_id:092817 AY354147 clone pIR3BE03 2.28.5.2.2.042 OTU 1 seq prokMSA_id:093089 AY354174 clone pIR3BB05 2.28.5.2.2.043 OTU 1 seq prokMSA_id:093597 AY360489 clone BSB10-217m 2.28.5.2.2.044 OTU 1 seq prokMSA_id:093789 AY360510 clone BSB5-115m 2.28.5.2.2.045 OTU 1 seq prokMSA_id:093873 AY191485 epsilon clone LKC1.114_12 2.28.5.2.2.046 OTU 1 seq prokMSA_id:093919 AY360511 clone BSB6-217m 2.28.5.2.2.047 OTU 1 seq prokMSA_id:094040 AY191484 epsilon clone LKC1.114_11 2.28.5.2.2.048 OTU 1 seq prokMSA_id:094979 AJ515713 epsilon clone 22 2.28.5.2.2.049 OTU 1 seq prokMSA_id:095078 AJ515712 epsilon clone 88 2.28.5.2.2.050 OTU 3 seqs prokMSA_id:097914 AY211665 epsilon clone GoM GC234 005E prokMSA_id:096365 AY211670 epsilon clone GoM GC234 030E prokMSA_id:095260 AY211672 epsilon clone GoM GC234 036E 2.28.5.2.2.051 OTU 1 seq prokMSA_id:095499 AY211663 epsilon clone GoM GC185 538E 2.28.5.2.2.052 OTU 2 seqs prokMSA_id:098448 AY211676 epsilon clone GoM GC234 613E prokMSA_id:096203 AY211683 epsilon clone GoM GC234 633E 2.28.5.2.2.053 OTU 1 seq prokMSA_id:096970 AY211671 epsilon clone GoM GC234 035E 2.28.5.2.2.054 OTU 1 seq prokMSA_id:097648 AY225611 epsilon clone AT-co15 2.28.5.2.2.055 OTU 1 seq prokMSA_id:097721 AY225612 epsilon clone AT-co23 2.28.5.2.2.056 OTU 1 seq prokMSA_id:097740 AY381282 clone Lgja-52 2.28.5.2.2.057 OTU 1 seq prokMSA_id:098599 AJ575997 epsilon clone T6-Ph07-957 2.28.5.2.2.999 poor quality 16 seqs prokMSA_id:011110 AF047622 clone SRang2.2. prokMSA_id:019231 AF111863 UPB F5 prokMSA_id:033731 AF111865 UPB C1 prokMSA_id:016756 AF121086 ODP8-U6 prokMSA_id:052569 AF296189 SY6-1 prokMSA_id:022114 AF296198 SY6-31 prokMSA_id:049887 AF468712 epsilon clone 33-PA38B98 prokMSA_id:031742 AF468781 epsilon clone 33-FL39B00 prokMSA_id:084427 AJ495641 epsilon isolate SA-45 prokMSA_id:082976 AY263717 epsilon clone FBR3 prokMSA_id:086713 AY279047 clone CS039 prokMSA_id:090064 AY311805 Dpcom107 prokMSA_id:011114 U46506 Thiomicrospira sp. CVO prokMSA_id:011106 X91437 clone A14jsn. prokMSA_id:011105 X91438 clone A15jk. prokMSA_id:011107 Z69332 str. s28. 2.28.5.2.3 THVL.SP_SUBGROUP 7 seqs 2.28.5.2.3.999 poor quality 7 seqs prokMSA_id:072746 AH003133 Thiovulum sp. 5' fragment. enrichment by D.A.Stahl prokMSA_id:011119 M92323 Thiovulum sp. prokMSA_id:070032 M92324 Thiovulum sp. 3' segment enrichment by D.A.Stahl prokMSA_id:011118 NONE Thiovulum sp. prokMSA_id:011115 X91187 clone G15. prokMSA_id:011117 Z69270 clone JN5bf. prokMSA_id:011116 Z69330 str. s26. 2.28.5.2.4 ALVINELLA_POMPEJANA_SYMBIONTS_SUBGROUP 329 seqs 2.28.5.2.4.001 OTU 6 seqs prokMSA_id:011151 AF068789 VC2.1 Bac8 complete prokMSA_id:011152 AF068795 VC2.1 Bac17 complete prokMSA_id:011153 AF068796 VC2.1 Bac19 complete prokMSA_id:011154 AF068797 VC2.1 Bac20 complete prokMSA_id:011155 AF068804 VC2.1 Bac30 complete prokMSA_id:011156 AF068812 VC2.1 Bac12 complete 2.28.5.2.4.002 OTU 1 seq prokMSA_id:011150 L35522 symbiont of Alvinella pompejana. 2.28.5.2.4.003 OTU 2 seqs prokMSA_id:011146 AB013261 str. NKB9. prokMSA_id:011149 AB015258 str. JTB315. 2.28.5.2.4.004 OTU 2 seqs prokMSA_id:011145 AB013260 str. NKB8. prokMSA_id:011148 AB013264 str. NKB12. 2.28.5.2.4.009 OTU 1 seq prokMSA_id:011142 AB015535 str. BD2-5. 2.28.5.2.4.012 OTU 1 seq prokMSA_id:011139 AF029044 clone SB-17. 2.28.5.2.4.014 OTU 1 seq prokMSA_id:011136 AF068805 VC2.1 Bac31 complete 2.28.5.2.4.015 OTU 1 seq prokMSA_id:011135 AF047630 clone SRang51. 2.28.5.2.4.017 OTU 2 seqs prokMSA_id:011131 AF047620 clone SRang1.35. prokMSA_id:011132 AF047626 clone SRang1.27. 2.28.5.2.4.018 OTU 1 seq prokMSA_id:011130 AF068786 VC2.1 Bac4 complete 2.28.5.2.4.019 OTU 1 seq prokMSA_id:011129 AF068783 VC2.1 Bac1 complete 2.28.5.2.4.020 OTU 1 seq prokMSA_id:011128 AF121887 clone 2BP-7. 2.28.5.2.4.021 OTU 1 seq prokMSA_id:011127 U29081 symbiont of Rimicaris exoculata. 2.28.5.2.4.022 OTU 1 seq prokMSA_id:011124 L35521 symbiont of Alvinella pompejana. 2.28.5.2.4.023 OTU 1 seq prokMSA_id:011121 L35520 symbiont of Alvinella pompejana. 2.28.5.2.4.024 OTU 1 seq prokMSA_id:011120 L35523 symbiont of Alvinella pompejana. 2.28.5.2.4.025 OTU 1 seq prokMSA_id:095855 AJ575984 epsilon clone T6-Ph07-847 2.28.5.2.4.026 OTU 1 seq prokMSA_id:016659 AF468699 epsilon clone 33-PA73B98 2.28.5.2.4.027 OTU 1 seq prokMSA_id:016957 AF357196 Epsilon 18.2 2.28.5.2.4.028 OTU 3 seqs prokMSA_id:017403 AF299127 S17sBac3 complete prokMSA_id:040818 AF299128 S17sBac34 complete prokMSA_id:042752 AF299131 S17sBac8 complete 2.28.5.2.4.029 OTU 2 seqs prokMSA_id:017634 AF468755 epsilon clone 33-FL69B98 prokMSA_id:046918 AF468756 epsilon clone 33-FL76B98 2.28.5.2.4.030 OTU 1 seq prokMSA_id:018072 AF468731 epsilon clone 33-PA14B00 2.28.5.2.4.031 OTU 3 seqs prokMSA_id:019351 AF468725 epsilon clone 33-PA99B99 prokMSA_id:044845 AF468729 epsilon clone 33-PA31B00 prokMSA_id:051487 AF468730 epsilon clone 33-PA43B00 2.28.5.2.4.032 OTU 1 seq prokMSA_id:020059 AJ132737 Top-147 clone Top-147 2.28.5.2.4.033 OTU 1 seq prokMSA_id:020755 AF367497 epsilon VC1.2-cl57 2.28.5.2.4.034 OTU 1 seq prokMSA_id:021582 AF468718 epsilon clone 33-PA26B98 2.28.5.2.4.035 OTU 3 seqs prokMSA_id:030424 AF468727 epsilon clone 33-PA111B99 prokMSA_id:022254 AF468766 epsilon clone 33-FL71B99 prokMSA_id:048476 AF468767 epsilon clone 33-FL127B99 2.28.5.2.4.038 OTU 1 seq prokMSA_id:023932 AF224805 clone Car153a 2.28.5.2.4.039 OTU 6 seqs prokMSA_id:034512 AF194211 epsilon n22 prokMSA_id:036709 AF224802 clone Car73ra prokMSA_id:030408 AF224804 clone CarB13a prokMSA_id:023967 AF224806 clone Car29rb prokMSA_id:047528 AF224807 clone Car55fb prokMSA_id:035085 AF224838 clone Car59rc 2.28.5.2.4.040 OTU 1 seq prokMSA_id:024989 AF468752 epsilon clone 33-PA62B00 2.28.5.2.4.041 OTU 1 seq prokMSA_id:025047 AF468734 epsilon clone 33-PA79B00 2.28.5.2.4.043 OTU 1 seq prokMSA_id:027536 AF367486 epsilon VC1.2-cl10 2.28.5.2.4.045 OTU 6 seqs prokMSA_id:063582 AB069788 clone:CS2.26 prokMSA_id:063579 AB069789 clone:CS2.28 prokMSA_id:011137 AF154091 clone BPC056. prokMSA_id:011138 AF154101 clone GCA014. prokMSA_id:073787 AF420362 isolate C1_B011 prokMSA_id:041331 AF468747 epsilon clone 33-PA54B00 2.28.5.2.4.046 OTU 1 seq prokMSA_id:029260 AF224799 clone Car13a 2.28.5.2.4.047 OTU 1 seq prokMSA_id:030273 AF468764 epsilon clone 33-FL35B99 2.28.5.2.4.048 OTU 1 seq prokMSA_id:030659 AF468774 epsilon clone 33-FL101B00 2.28.5.2.4.049 OTU 1 seq prokMSA_id:055964 AB062153 clone:pBSB3.1 2.28.5.2.4.051 OTU 1 seq prokMSA_id:033429 AF468745 epsilon clone 33-PA55B00 2.28.5.2.4.052 OTU 1 seq prokMSA_id:033791 AF468698 epsilon clone 33-PA64B98 2.28.5.2.4.053 OTU 1 seq prokMSA_id:034281 AF468735 epsilon clone 33-PA3B00 2.28.5.2.4.054 OTU 1 seq prokMSA_id:034431 AF367484 epsilon VC1.2-cl06 2.28.5.2.4.055 OTU 1 seq prokMSA_id:034515 AF367499 epsilon VC1.2-cl69 2.28.5.2.4.056 OTU 2 seqs prokMSA_id:034749 AF468722 epsilon clone 33-PA132B99 prokMSA_id:045905 AF468762 epsilon clone 33-FL124B99 2.28.5.2.4.057 OTU 2 seqs prokMSA_id:035810 AF299124 S17sBac14 complete prokMSA_id:036523 AF299129 S17sBac4 complete 2.28.5.2.4.058 OTU 3 seqs prokMSA_id:098264 AJ575967 epsilon clone T3-Hot3-751 prokMSA_id:057733 AY075124 marine Vent 1 prokMSA_id:055866 AY075125 marine Vent 18 2.28.5.2.4.059 OTU 1 seq prokMSA_id:038192 AF468732 epsilon clone 33-PA61B00 2.28.5.2.4.060 OTU 1 seq prokMSA_id:040838 AF299123 S17sBac25 complete 2.28.5.2.4.061 OTU 1 seq prokMSA_id:041233 AF367489 epsilon VC1.2-cl21 2.28.5.2.4.063 OTU 1 seq prokMSA_id:045353 AF299125 S17sBac19 complete 2.28.5.2.4.064 OTU 1 seq prokMSA_id:057732 AY075127 marine Vent 12 2.28.5.2.4.065 OTU 1 seq prokMSA_id:046541 AF468700 epsilon clone 33-PA72B98 2.28.5.2.4.066 OTU 1 seq prokMSA_id:047236 AJ404370 epsilon 525 2.28.5.2.4.067 OTU 1 seq prokMSA_id:047967 AF299130 S17sBac5 complete 2.28.5.2.4.068 OTU 1 seq prokMSA_id:048014 AF468763 epsilon clone 33-FL37B99 2.28.5.2.4.069 OTU 1 seq prokMSA_id:057475 AJ441202 epsilon clone P. palm C 140 2.28.5.2.4.070 OTU 1 seq prokMSA_id:057474 AJ441203 epsilon clone P. palm C/A 13 2.28.5.2.4.071 OTU 1 seq prokMSA_id:057473 AJ441204 epsilon clone P. palm C 84 2.28.5.2.4.072 OTU 1 seq prokMSA_id:057472 AJ441205 epsilon clone P. palm C/A 114 2.28.5.2.4.073 OTU 1 seq prokMSA_id:057471 AJ441206 epsilon clone P. palm C/A 113 2.28.5.2.4.074 OTU 1 seq prokMSA_id:057470 AJ441207 epsilon clone P. palm C/A 18 2.28.5.2.4.075 OTU 1 seq prokMSA_id:057469 AJ441209 epsilon clone P. palm C/A 64 2.28.5.2.4.076 OTU 1 seq prokMSA_id:057467 AJ441211 epsilon clone P. palm C/A 89 2.28.5.2.4.077 OTU 1 seq prokMSA_id:057440 AJ441245 Verrucomicrobia clone P. palm A/C 285 2.28.5.2.4.078 OTU 1 seq prokMSA_id:050346 AF468783 epsilon clone 33-FL65B00 2.28.5.2.4.079 OTU 1 seq prokMSA_id:051291 AF357197 Epsilon Am-H 2.28.5.2.4.080 OTU 3 seqs prokMSA_id:061869 AF449240 epsilon clone R103-B76 prokMSA_id:055437 AJ441208 epsilon clone P. palm C/A 55 prokMSA_id:096850 AJ575971 epsilon clone T4-Ph01-307 2.28.5.2.4.081 OTU 1 seq prokMSA_id:056613 AY075126 marine Vent 23 2.28.5.2.4.082 OTU 1 seq prokMSA_id:054845 AF299126 S17sBac21 complete 2.28.5.2.4.084 OTU 1 seq prokMSA_id:061851 AF449254 epsilon clone R76-B12 2.28.5.2.4.085 OTU 1 seq prokMSA_id:061855 AF449253 epsilon clone R76-B151 2.28.5.2.4.086 OTU 1 seq prokMSA_id:061858 AF449251 epsilon clone R76-B78 2.28.5.2.4.090 OTU 3 seqs prokMSA_id:061875 AF449234 epsilon clone R103-B22 prokMSA_id:061867 AF449241 epsilon clone R76-A19 prokMSA_id:079418 AJ431217 BHI60-9 strain BHI60-9 2.28.5.2.4.092 OTU 8 seqs prokMSA_id:011134 AF047629 clone SRang42. prokMSA_id:061874 AF449236 epsilon clone R103-B37 prokMSA_id:061872 AF449237 epsilon clone R103-B43 prokMSA_id:061861 AF449248 epsilon clone R76-B61 prokMSA_id:057468 AJ441210 epsilon clone P. palm C/A 220 prokMSA_id:098687 AJ575965 epsilon clone T3-Hot3-737 prokMSA_id:098468 AJ575980 epsilon clone T6-Ph07-805 prokMSA_id:071201 AY075128 marine Vent 21 2.28.5.2.4.093 OTU 1 seq prokMSA_id:061877 AF449232 epsilon clone R103-B18 2.28.5.2.4.094 OTU 1 seq prokMSA_id:061878 AF449231 epsilon clone R103-B15 2.28.5.2.4.095 OTU 1 seq prokMSA_id:063568 AB069802 clone:CS8.5 2.28.5.2.4.096 OTU 1 seq prokMSA_id:067780 AF420360 isolate C1_B007 2.28.5.2.4.097 OTU 1 seq prokMSA_id:067786 AF420358 isolate C1_B005 2.28.5.2.4.098 OTU 1 seq prokMSA_id:067787 AF420351 isolate CS_B015 2.28.5.2.4.099 OTU 1 seq prokMSA_id:067789 AF420348 isolate a2b009 2.28.5.2.4.100 OTU 1 seq prokMSA_id:067790 AF420347 isolate a2b043 2.28.5.2.4.101 OTU 1 seq prokMSA_id:067791 AF420346 isolate a1b030 2.28.5.2.4.103 OTU 6 seqs prokMSA_id:084230 AB091292 Epsilon 42BKT prokMSA_id:067792 AF420345 isolate a2b004 prokMSA_id:061873 AF449235 epsilon clone R103-B23 prokMSA_id:079240 AJ431221 BHI60-14 strain BHI60-14 prokMSA_id:079175 AJ431222 BHI80-16 strain BHI80-16 prokMSA_id:098636 AJ575968 epsilon clone T4-Ph01-11 2.28.5.2.4.104 OTU 3 seqs prokMSA_id:067794 AF420343 isolate a1b024 prokMSA_id:095494 AJ575975 epsilon clone T4-Ph01-41 prokMSA_id:098206 AJ575981 epsilon clone T6-Ph07-811 2.28.5.2.4.105 OTU 1 seq prokMSA_id:070391 AF367493 epsilon VC1.2-cl42 2.28.5.2.4.106 OTU 1 seq prokMSA_id:070485 AF367500 epsilon VC1.2-cl74 2.28.5.2.4.107 OTU 1 seq prokMSA_id:076510 AY164348 epsilon clone ALIB-41 2.28.5.2.4.108 OTU 1 seq prokMSA_id:076523 AJ535664 Caminibacter sp. CR strain CR 2.28.5.2.4.109 OTU 1 seq prokMSA_id:077641 AB089112 epsilon clone:Rs-P71 2.28.5.2.4.110 OTU 1 seq prokMSA_id:077777 AJ535216 epsilon clone Hyd01-01 2.28.5.2.4.111 OTU 1 seq prokMSA_id:078387 AB089113 epsilon clone:Rs-H40 2.28.5.2.4.112 OTU 1 seq prokMSA_id:079140 AJ431223 BHI80-20 strain BHI80-20 2.28.5.2.4.113 OTU 1 seq prokMSA_id:079170 AJ431219 BHI60-11 strain BHI60-11 2.28.5.2.4.114 OTU 1 seq prokMSA_id:079239 AJ431224 Dex80-90 strain Dex80-90 2.28.5.2.4.115 OTU 1 seq prokMSA_id:079345 AJ431213 BHI60-53 strain BHI60-53 2.28.5.2.4.116 OTU 1 seq prokMSA_id:079406 AJ431214 BHI80-5 strain BHI80-5 2.28.5.2.4.117 OTU 1 seq prokMSA_id:079474 AJ431225 Dex80-5 strain Dex80-5 2.28.5.2.4.118 OTU 1 seq prokMSA_id:079565 AJ431218 Dex60-82 strain Dex60-82 2.28.5.2.4.119 OTU 1 seq prokMSA_id:079591 AB099998 sequences clone: IndB1-30 2.28.5.2.4.120 OTU 1 seq prokMSA_id:079598 AJ431220 Dex80-27 strain Dex80-27 2.28.5.2.4.121 OTU 1 seq prokMSA_id:079600 AJ431216 BHI80-49 strain BHI80-49 2.28.5.2.4.122 OTU 1 seq prokMSA_id:081183 AB091298 epsilon strain:BKB25Ts-Y 2.28.5.2.4.123 OTU 1 seq prokMSA_id:081464 AB091297 epsilon strain:B455-1 2.28.5.2.4.124 OTU 4 seqs prokMSA_id:081549 AB091303 epsilon strain:365-55-1% prokMSA_id:088216 AB113167 Hydrogenomonas sp. clone:pCIRB-G prokMSA_id:089848 AB113185 epsilon clone:pCIRB-74 prokMSA_id:090277 AB113192 Hydrogenomonas thermophilus strain:Ep-S-37-10% 2.28.5.2.4.125 OTU 1 seq prokMSA_id:081671 AB091294 epsilon strain:BKB55-1 2.28.5.2.4.126 OTU 1 seq prokMSA_id:081765 AB091296 epsilon strain:MI55-1 2.28.5.2.4.127 OTU 1 seq prokMSA_id:081874 AB091304 epsilon strain:B155-1 2.28.5.2.4.128 OTU 1 seq prokMSA_id:081995 AB091300 epsilon strain:E9S37-1 2.28.5.2.4.129 OTU 1 seq prokMSA_id:082676 AY226230 epsilon clone ABBB-92 2.28.5.2.4.130 OTU 1 seq prokMSA_id:083180 AY208813 epsilon clone LKC2.127-53 2.28.5.2.4.131 OTU 1 seq prokMSA_id:083351 AY197378 clone B01R006 2.28.5.2.4.132 OTU 1 seq prokMSA_id:083596 AY261811 epsilon clone PD-UASB-2 2.28.5.2.4.133 OTU 1 seq prokMSA_id:083924 AY197410 clone B03P029 2.28.5.2.4.134 OTU 1 seq prokMSA_id:084016 AY226306 epsilon clone DBBB-68 2.28.5.2.4.135 OTU 1 seq prokMSA_id:086110 AY226297 epsilon clone DBBB-46 2.28.5.2.4.138 OTU 1 seq prokMSA_id:088165 AB113181 epsilon clone:pCIRB-50 2.28.5.2.4.139 OTU 1 seq prokMSA_id:088195 AB113172 epsilon clone:pCIRB-N 2.28.5.2.4.140 OTU 1 seq prokMSA_id:088242 AB113171 epsilon clone:pCIRB-M 2.28.5.2.4.141 OTU 5 seqs prokMSA_id:088260 AB112446 epsilon clone:SUP01-01 prokMSA_id:088311 AB112447 epsilon clone:SUP01-02 prokMSA_id:088529 AB112448 epsilon clone:SUP01-20 prokMSA_id:088384 AB112449 epsilon clone:SUP01-22 prokMSA_id:089465 AB112450 epsilon clone:SUP01-25 2.28.5.2.4.142 OTU 1 seq prokMSA_id:088572 AY327881 epsilon clone SF_C4-C4 2.28.5.2.4.143 OTU 1 seq prokMSA_id:089197 AB113174 epsilon clone:pCIRB-5 2.28.5.2.4.144 OTU 1 seq prokMSA_id:089284 AB113188 Nautilia sp. clone:pCIRB-77 2.28.5.2.4.145 OTU 1 seq prokMSA_id:089341 AY327159 clone ZB47 2.28.5.2.4.146 OTU 1 seq prokMSA_id:089595 AB113180 epsilon clone:pCIRB-38 2.28.5.2.4.147 OTU 1 seq prokMSA_id:089815 AY327158 clone ZB46 2.28.5.2.4.148 OTU 1 seq prokMSA_id:089879 AB113164 epsilon clone:pCIRB-C 2.28.5.2.4.149 OTU 1 seq prokMSA_id:090292 AB113169 epsilon clone:pCIRB-I 2.28.5.2.4.150 OTU 1 seq prokMSA_id:090315 AY327156 clone ZB43 2.28.5.2.4.151 OTU 1 seq prokMSA_id:090407 AY327163 clone ZB50 2.28.5.2.4.152 OTU 1 seq prokMSA_id:090455 AY327882 epsilon clone SF_C4-D5 2.28.5.2.4.153 OTU 1 seq prokMSA_id:090563 AB113187 epsilon clone:pCIRB-76 2.28.5.2.4.154 OTU 1 seq prokMSA_id:090713 AB113168 epsilon clone:pCIRB-H 2.28.5.2.4.156 OTU 17 seqs prokMSA_id:025670 AJ307941 mRNA clone sipK94 prokMSA_id:093500 AY191469 epsilon clone LKC1.57_1 prokMSA_id:093812 AY191473 epsilon clone LKC1.57_5 prokMSA_id:093361 AY191474 epsilon clone LKC1.57_9 prokMSA_id:093704 AY191475 epsilon clone LKC1.57_13 prokMSA_id:093171 AY191476 epsilon clone LKC1.57_25 prokMSA_id:094169 AY191480 epsilon clone LKC1.114_5 prokMSA_id:093819 AY191486 epsilon clone LKC1.190_1 prokMSA_id:093920 AY191487 epsilon clone LKC1.190_2 prokMSA_id:093818 AY191488 epsilon clone LKC1.190_3 prokMSA_id:093382 AY191489 epsilon clone LKC1.198_2 prokMSA_id:093810 AY191490 epsilon clone LKC1.199_1 prokMSA_id:093345 AY191491 epsilon clone LKC1.199_2 prokMSA_id:093661 AY191492 epsilon clone LKC1.199_3 prokMSA_id:093914 AY191493 epsilon clone LKC1.199_4 prokMSA_id:094224 AY191494 epsilon clone LKC1.199_5 prokMSA_id:093231 AY191496 epsilon clone LKC1.199_8 2.28.5.2.4.157 OTU 1 seq prokMSA_id:093793 AY191471 epsilon clone LKC1.57_3 2.28.5.2.4.158 OTU 1 seq prokMSA_id:093832 AY191497 epsilon clone LKC1.199_9 2.28.5.2.4.159 OTU 1 seq prokMSA_id:094038 AY191495 epsilon clone LKC1.199_6 2.28.5.2.4.160 OTU 3 seqs prokMSA_id:094327 AJ515716 epsilon clone 15 prokMSA_id:094393 AJ515717 epsilon clone 11 prokMSA_id:096301 AY225621 epsilon clone AT-pp46 2.28.5.2.4.161 OTU 1 seq prokMSA_id:094413 AY312990 Alvinella pompejana epibiont 6C6 fosmid clone 6C6 complete 2.28.5.2.4.162 OTU 2 seqs prokMSA_id:094683 AJ515714 epsilon clone 4 prokMSA_id:094518 AJ515715 epsilon clone 37 2.28.5.2.4.163 OTU 1 seq prokMSA_id:094941 AY312991 Alvinella pompejana epibiont 7G3 fosmid clone 7G3 complete 2.28.5.2.4.165 OTU 2 seqs prokMSA_id:095274 AJ538355 clone 538 prokMSA_id:095884 AJ538358 clone 51 2.28.5.2.4.166 OTU 1 seq prokMSA_id:095420 AJ575977 epsilon clone T4-Ph01-44 2.28.5.2.4.167 OTU 2 seqs prokMSA_id:098841 AJ575960 epsilon clone T3-Hot3-637 prokMSA_id:095437 AJ575963 epsilon clone T3-Hot3-706 2.28.5.2.4.168 OTU 1 seq prokMSA_id:095839 AJ575996 epsilon clone T6-Ph07-945 2.28.5.2.4.169 OTU 1 seq prokMSA_id:095850 AJ576001 epsilon clone T6-Ph07-974 2.28.5.2.4.173 OTU 38 seqs prokMSA_id:011147 AB013262 str. NKB10. prokMSA_id:011140 AB015517 str. BD1-4. prokMSA_id:011141 AB015531 str. BD2-1. prokMSA_id:011143 AB015582 str. BD7-6. prokMSA_id:011144 AB015584 str. BD7-9. prokMSA_id:045297 AB022615 epsilon SA63 prokMSA_id:063586 AB069782 clone:CS2.1 prokMSA_id:063574 AB069796 clone:CS5.17 prokMSA_id:082567 AB091293 Epsilon 49MY prokMSA_id:011133 AF047628 clone SRang24. prokMSA_id:027765 AF224803 clone Car75a prokMSA_id:023930 AF224854 clone Car125fc prokMSA_id:067793 AF420344 isolate a1b001 prokMSA_id:067782 AF420359 isolate C1_B006 prokMSA_id:061876 AF449233 epsilon clone R103-B19 prokMSA_id:061871 AF449238 epsilon clone R103-B46 prokMSA_id:061868 AF449242 epsilon clone R76-B29 prokMSA_id:061866 AF449243 epsilon clone R76-B30 prokMSA_id:061864 AF449244 epsilon clone R76-B25 prokMSA_id:061865 AF449245 epsilon clone R76-B47 prokMSA_id:061863 AF449246 epsilon clone R76-B51 prokMSA_id:061862 AF449247 epsilon clone R76-B57 prokMSA_id:061860 AF449249 epsilon clone R76-B67 prokMSA_id:061859 AF449250 epsilon clone R76-B76 prokMSA_id:061857 AF449252 epsilon clone R76-B129 prokMSA_id:032433 AF468728 epsilon clone 33-PA54B99 prokMSA_id:096650 AJ575973 epsilon clone T4-Ph01-321 prokMSA_id:097164 AJ575991 epsilon clone T6-Ph07-904 prokMSA_id:056249 AY133374 clone BB2_61 prokMSA_id:059815 AY133375 clone BB2_96 prokMSA_id:082535 AY197375 clone B01R002 prokMSA_id:096015 AY225614 epsilon clone AT-cs3 prokMSA_id:096100 AY225616 epsilon clone AT-co11 prokMSA_id:098179 AY225617 epsilon clone AT-co16 prokMSA_id:097434 AY225622 epsilon clone AT-cs8 prokMSA_id:090529 AY327878 epsilon clone SF_C7-F8 prokMSA_id:089214 AY327879 epsilon clone SF_C4-F6 prokMSA_id:088951 AY327880 epsilon clone SF_C5-F8 2.28.5.2.4.174 OTU 1 seq prokMSA_id:096613 AJ575948 epsilon clone T2-PP12-465 2.28.5.2.4.175 OTU 1 seq prokMSA_id:096625 AJ575947 epsilon clone T2-PP12-455 2.28.5.2.4.176 OTU 1 seq prokMSA_id:096724 AJ575983 epsilon clone T6-Ph07-837 2.28.5.2.4.177 OTU 1 seq prokMSA_id:096751 AJ575999 epsilon clone T6-Ph07-972 2.28.5.2.4.178 OTU 2 seqs prokMSA_id:098807 AY225625 epsilon clone AT-cs7 prokMSA_id:096761 AY225626 epsilon clone AT-co13 2.28.5.2.4.179 OTU 2 seqs prokMSA_id:096798 AY225619 epsilon clone AT-s3-19 prokMSA_id:096918 AY225620 epsilon clone AT-pp26 2.28.5.2.4.180 OTU 1 seq prokMSA_id:097103 AJ575959 epsilon clone T3-Hot3-602 2.28.5.2.4.182 OTU 7 seqs prokMSA_id:097260 AJ575972 epsilon clone T4-Ph01-311 prokMSA_id:098875 AJ575976 epsilon clone T4-Ph01-42 prokMSA_id:097147 AJ575978 epsilon clone T4-Ph01-5 prokMSA_id:098720 AJ575979 epsilon clone T4-Ph01-65 prokMSA_id:098765 AJ575986 epsilon clone T6-Ph07-856 prokMSA_id:098788 AJ575994 epsilon clone T6-Ph07-924 prokMSA_id:095203 AJ575995 epsilon clone T6-Ph07-927 2.28.5.2.4.183 OTU 2 seqs prokMSA_id:098432 AY225623 epsilon clone AT-cs15 prokMSA_id:097289 AY225624 epsilon clone AT-pp27 2.28.5.2.4.184 OTU 1 seq prokMSA_id:097293 AJ575966 epsilon clone T3-Hot3-748 2.28.5.2.4.185 OTU 1 seq prokMSA_id:097618 AJ575989 epsilon clone T6-Ph07-889 2.28.5.2.4.186 OTU 1 seq prokMSA_id:097696 AJ538356 clone 524 2.28.5.2.4.187 OTU 1 seq prokMSA_id:097735 AJ575958 epsilon clone T3-Hot3-601 2.28.5.2.4.188 OTU 1 seq prokMSA_id:098172 AJ575961 epsilon clone T3-Hot3-648 2.28.5.2.4.189 OTU 1 seq prokMSA_id:098223 AY225618 epsilon clone AT-co12 2.28.5.2.4.190 OTU 1 seq prokMSA_id:098292 AJ575951 epsilon clone T2-PP12-500 2.28.5.2.4.191 OTU 1 seq prokMSA_id:098317 AJ575944 epsilon clone T2-PP12-440 2.28.5.2.4.192 OTU 1 seq prokMSA_id:098351 AJ575969 epsilon clone T4-Ph01-13 2.28.5.2.4.193 OTU 1 seq prokMSA_id:098483 AJ575992 epsilon clone T6-Ph07-914 2.28.5.2.4.194 OTU 1 seq prokMSA_id:098786 AJ575974 epsilon clone T4-Ph01-40 2.28.5.2.4.195 OTU 1 seq prokMSA_id:098839 AJ576002 epsilon clone T6-Ph07-983 2.28.5.2.4.196 OTU 1 seq prokMSA_id:098869 AJ575970 epsilon clone T4-Ph01-240 2.28.5.2.4.999 poor quality 40 seqs prokMSA_id:017805 AB042498 methane-seep sediment SB-13 prokMSA_id:017002 AF090545 BHD15 prokMSA_id:036046 AF107317 freshwater LCK-02 prokMSA_id:025613 AF111859 UPB E5 prokMSA_id:044719 AF111867 UPA H2 prokMSA_id:056546 AF128652 soil S052 prokMSA_id:011126 AF180303 clone apg79. prokMSA_id:011123 AF180304 clone apg73. prokMSA_id:011122 AF180305 clone apg68. prokMSA_id:011125 AF180310 clone apg115. prokMSA_id:050199 AF194210 epsilon n18r prokMSA_id:049247 AF194212 epsilon n29r prokMSA_id:038974 AF194213 epsilon n38r prokMSA_id:020752 AF207530 Environmental clone CC-4 prokMSA_id:068099 AF365638 clone BM89DS1BbB5 prokMSA_id:071173 AF367481 epsilon VC1.2-cl01 prokMSA_id:076604 AF432742 clone N27.24SM prokMSA_id:033751 AF468696 epsilon clone 33-PA4B98 prokMSA_id:028506 AF468697 epsilon clone 33-PA17B98 prokMSA_id:031007 AF468709 epsilon clone 33-PA42B98 prokMSA_id:021709 AF468719 epsilon clone 33-PA16B98 prokMSA_id:027320 AF468726 epsilon clone 33-PA52B99 prokMSA_id:023085 AF468741 epsilon clone 33-PA16B00 prokMSA_id:026600 AF468760 epsilon clone 33-FL8B99 prokMSA_id:039155 AF468761 epsilon clone 33-FL92B99 prokMSA_id:067284 AF495405 clone F10.45 prokMSA_id:047237 AJ132722 CHA3-122 clone CHA3-122 prokMSA_id:057116 AJ518413 clone Neu4P3-10 prokMSA_id:057719 AY154392 epsilon LTUE07614 prokMSA_id:084088 AY197380 clone B01R009 prokMSA_id:085073 AY197396 clone B02R011 prokMSA_id:084019 AY226264 epsilon clone BBBB-73 prokMSA_id:083532 AY226338 epsilon clone UBBB-73 prokMSA_id:083266 AY256619 DGGE band A2-6 prokMSA_id:086968 AY279060 clone CS027 prokMSA_id:087694 AY279062 clone CS031 prokMSA_id:086911 AY279065 clone CS029 prokMSA_id:088602 AY327161 clone ZB48 prokMSA_id:091357 AY340850 isolate DGGE fragment SR_FBR_E9 prokMSA_id:011157 U08396 clone A7. 2.28.5.3 CAMPYLOBACTER_GROUP 453 seqs 2.28.5.3.1 AOB.CRYAEROPHILUS_SUBGROUP 165 seqs 2.28.5.3.1.001 OTU 2 seqs prokMSA_id:011182 AB015256 str. JTB129. prokMSA_id:011183 AB015259 str. JTB360. 2.28.5.3.1.002 OTU 1 seq prokMSA_id:011181 AB013833 str. 77.d. 2.28.5.3.1.003 OTU 1 seq prokMSA_id:011180 AB015529 str. BD1-29. 2.28.5.3.1.005 OTU 1 seq prokMSA_id:011177 AF142919 Arcobacter PENDANT-6. 2.28.5.3.1.006 OTU 1 seq prokMSA_id:011176 D83061 unnamed organism. 2.28.5.3.1.007 OTU 1 seq prokMSA_id:011175 D83060 unnamed organism. 2.28.5.3.1.008 OTU 1 seq prokMSA_id:011173 Z94003 clone T40. 2.28.5.3.1.009 OTU 1 seq prokMSA_id:011170 Z94000 clone T18. 2.28.5.3.1.010 OTU 1 seq prokMSA_id:011168 Z93998 clone T95. 2.28.5.3.1.012 OTU 8 seqs prokMSA_id:081419 AY187467 clone SB129 prokMSA_id:011165 L14624 Arcobacter cryaerophilus CCUG 17801 . prokMSA_id:011178 U34387 Arcobacter cryaerophilus str. Pig 69. prokMSA_id:011166 Z93951 clone T31. prokMSA_id:011167 Z93997 clone T81. prokMSA_id:011169 Z93999 clone T24. prokMSA_id:011171 Z94001 clone T55. prokMSA_id:011172 Z94002 clone T31. 2.28.5.3.1.013 OTU 1 seq prokMSA_id:011163 AB013832 str. 45.e. 2.28.5.3.1.014 OTU 2 seqs prokMSA_id:011162 L42994 Arcobacter sp. str. Solar Lake. prokMSA_id:070443 L42994 Arcobacter sp. 2.28.5.3.1.015 OTU 4 seqs prokMSA_id:036386 AF314538 Arcobacter butzleri prokMSA_id:011158 L14626 Arcobacter butzleri CCUG 10373. prokMSA_id:011159 U34386 Arcobacter butzleri str. Pig 61. prokMSA_id:011160 U34388 Arcobacter butzleri str. Pig 15. 2.28.5.3.1.016 OTU 1 seq prokMSA_id:016393 AF468786 epsilon clone 33-FL76B00 2.28.5.3.1.017 OTU 1 seq prokMSA_id:072479 AY062177 Marine MSC2 2.28.5.3.1.019 OTU 1 seq prokMSA_id:017990 AF324539 epsilon BioIuz K34 2.28.5.3.1.020 OTU 8 seqs prokMSA_id:018321 AF468701 epsilon clone 33-PA2B98 prokMSA_id:045997 AF468702 epsilon clone 33-PA12B98 prokMSA_id:028498 AF468703 epsilon clone 33-PA14B98 prokMSA_id:041649 AF468704 epsilon clone 33-PA59B98 prokMSA_id:049224 AF468705 epsilon clone 33-PA71B98 prokMSA_id:023883 AF468706 epsilon clone 33-PA74B98 prokMSA_id:045020 AF468707 epsilon clone 33-PA79B98 prokMSA_id:025984 AF468708 epsilon clone 33-PA86B98 2.28.5.3.1.021 OTU 9 seqs prokMSA_id:042967 AJ132723 CHA3-101 clone CHA3-101 prokMSA_id:027126 AJ132724 CHA3-124 clone CHA3-124 prokMSA_id:072967 AJ132725 CHA3-217 clone CHA3-217 prokMSA_id:019566 AJ132726 CHA3-127 clone CHA3-127 prokMSA_id:020461 AJ132728 CHA3-437 clone CHA3-437 prokMSA_id:074747 AJ132729 CHA3-215 clone CHA3-215 prokMSA_id:049402 AJ132730 CHA3-4 clone CHA3-4 prokMSA_id:033261 AJ132731 CHA3-102 clone CHA3-102 prokMSA_id:048263 AJ132732 CHA3-30 clone CHA3-30 2.28.5.3.1.022 OTU 2 seqs prokMSA_id:045228 AJ271653 Arcobacter sp. clone B4b1 prokMSA_id:020475 AJ271655 Arcobacter sp. clone A3b2 2.28.5.3.1.023 OTU 2 seqs prokMSA_id:023096 AY038436 epsilon clone CD5G4 prokMSA_id:021241 AY038524 epsilon clone CD4B3 2.28.5.3.1.024 OTU 1 seq prokMSA_id:021381 AF224798 clone Car12fa 2.28.5.3.1.025 OTU 1 seq prokMSA_id:022128 AF144693 Oilfield 'FWKO B' 2.28.5.3.1.026 OTU 1 seq prokMSA_id:022840 AF299122 S17sBac17 complete 2.28.5.3.1.027 OTU 4 seqs prokMSA_id:035924 AB030592 epsilon 1006 prokMSA_id:024487 AB030593 epsilon 1053 prokMSA_id:040319 AF246706 epsilon prokMSA_id:035794 AF364941 clone clH10 2.28.5.3.1.028 OTU 1 seq prokMSA_id:025916 AF195486 Arcobacter kps57f 2.28.5.3.1.029 OTU 1 seq prokMSA_id:026838 AF468733 epsilon clone 33-PA18B00 2.28.5.3.1.030 OTU 1 seq prokMSA_id:028982 AF468737 epsilon clone 33-PA6B00 2.28.5.3.1.031 OTU 1 seq prokMSA_id:029396 AF468779 epsilon clone 33-FL88B00 2.28.5.3.1.032 OTU 1 seq prokMSA_id:030435 AF424300 epsilon MERTZ_0CM_367 2.28.5.3.1.034 OTU 1 seq prokMSA_id:032175 AF388883 Arcobacter sp. clone GOBB3-CL322 2.28.5.3.1.035 OTU 1 seq prokMSA_id:032899 AF195485 epsilon kps81f 2.28.5.3.1.036 OTU 3 seqs prokMSA_id:034350 AF468721 epsilon clone 33-PA4B99 prokMSA_id:034317 AF468770 epsilon clone 33-FL4B00 prokMSA_id:043723 AF468772 epsilon clone 33-FL94B00 2.28.5.3.1.037 OTU 6 seqs prokMSA_id:050542 AB030594 epsilon 1021 prokMSA_id:035496 AB030595 epsilon 1032 prokMSA_id:036312 AB030596 epsilon 1067 prokMSA_id:030662 AB030597 epsilon 1003 prokMSA_id:017190 AB030598 epsilon 1065 prokMSA_id:066095 AB074957 epsilon clone:KB49 2.28.5.3.1.038 OTU 1 seq prokMSA_id:035552 AF468785 epsilon clone 33-FL34B00 2.28.5.3.1.039 OTU 1 seq prokMSA_id:038114 AF468739 epsilon clone 33-PA74B00 2.28.5.3.1.040 OTU 1 seq prokMSA_id:038810 AF468773 epsilon clone 33-FL80B00 2.28.5.3.1.041 OTU 1 seq prokMSA_id:040453 AF468778 epsilon clone 33-FL74B00 2.28.5.3.1.042 OTU 1 seq prokMSA_id:044326 AF468749 epsilon clone 33-PA28B00 2.28.5.3.1.043 OTU 1 seq prokMSA_id:055760 AY075123 marine Vent 19 2.28.5.3.1.044 OTU 1 seq prokMSA_id:046274 AJ344208 isolate LES-45 2.28.5.3.1.045 OTU 1 seq prokMSA_id:048373 AB030599 epsilon 1057 2.28.5.3.1.046 OTU 1 seq prokMSA_id:048714 AF424299 epsilon MERTZ_0CM_34 2.28.5.3.1.047 OTU 1 seq prokMSA_id:049553 AF468777 epsilon clone 33-FL58B00 2.28.5.3.1.048 OTU 1 seq prokMSA_id:049628 AF235116 epsilon KTc1160 2.28.5.3.1.049 OTU 2 seqs prokMSA_id:051742 AF441940 epsilon clone CD11H2 prokMSA_id:050675 AF441942 epsilon clone CD11H4 2.28.5.3.1.050 OTU 1 seq prokMSA_id:051261 AF468780 epsilon clone 33-FL70B00 2.28.5.3.1.051 OTU 1 seq prokMSA_id:051975 AJ271654 Arcobacter sp. clone D1a1 2.28.5.3.1.052 OTU 1 seq prokMSA_id:053082 AF299121 S17sBac16 complete 2.28.5.3.1.053 OTU 1 seq prokMSA_id:060384 AF513455 Arcobacter sp. LA31B 2.28.5.3.1.054 OTU 1 seq prokMSA_id:061870 AF449239 epsilon clone R103-B70 2.28.5.3.1.055 OTU 1 seq prokMSA_id:070950 AY035822 Candidatus Arcobacter sulfidicus 2.28.5.3.1.056 OTU 1 seq prokMSA_id:071048 AF235110 Arcobacter sp. KT0913 2.28.5.3.1.057 OTU 3 seqs prokMSA_id:076194 AY164355 epsilon clone ALIB-70 prokMSA_id:075446 AY164450 epsilon clone ULIB-70 prokMSA_id:083509 AY226332 epsilon clone UBBB-42 2.28.5.3.1.058 OTU 1 seq prokMSA_id:077110 AY164439 epsilon clone ULIB-53 2.28.5.3.1.059 OTU 1 seq prokMSA_id:078005 AY172258 clone 2129 2.28.5.3.1.060 OTU 1 seq prokMSA_id:079301 AB100003 sequences clone: IndB2-33 2.28.5.3.1.061 OTU 1 seq prokMSA_id:084374 AY226194 epsilon clone ABBB-16 2.28.5.3.1.062 OTU 1 seq prokMSA_id:088798 AB113175 Arcobacter sp. clone:pCIRB-6 2.28.5.3.1.063 OTU 1 seq prokMSA_id:090144 AB113184 Arcobacter sp. clone:pCIRB-73 2.28.5.3.1.064 OTU 1 seq prokMSA_id:090413 AY327157 clone ZB45 2.28.5.3.1.065 OTU 1 seq prokMSA_id:091972 AY340831 clone SR_FBR_E91 2.28.5.3.1.066 OTU 1 seq prokMSA_id:096366 AY225610 epsilon clone AT-pp13 2.28.5.3.1.999 poor quality 61 seqs prokMSA_id:073900 AF024507 HT-1F prokMSA_id:074180 AF024508 HT-1R prokMSA_id:021444 AF180308 Alvinella pompejana symbiont apg118 prokMSA_id:030486 AF273322 IAFESB6 prokMSA_id:054379 AF287045 epsilon EC-A12 prokMSA_id:068232 AF365487 clone BM89MF5BA11 prokMSA_id:023761 AF387329 clone PN7 prokMSA_id:035102 AF387330 clone PN8 prokMSA_id:030532 AF390925 clone ICBBA6 prokMSA_id:041261 AF390926 clone ICBAA7 prokMSA_id:049021 AF390927 clone ICBAF5 prokMSA_id:038801 AF390928 clone ICBTE4 prokMSA_id:034988 AF390929 clone ICBTA1 prokMSA_id:038140 AF390930 clone ICBTG2 prokMSA_id:045987 AF390931 clone ICBTC5 prokMSA_id:040176 AF390932 clone ICBTD7 prokMSA_id:031975 AF390933 clone ICBTC7 prokMSA_id:022149 AF429111 clone CR99-24-01 prokMSA_id:020179 AF429253 clone CR99-2-67 prokMSA_id:064826 AF434105 epsilon clone M2-1-10 prokMSA_id:056336 AF434106 epsilon clone P1-1-12 prokMSA_id:064824 AF434107 epsilon clone P3-1-1 prokMSA_id:064823 AF434108 epsilon clone M3-1-14 prokMSA_id:047112 AF441879 epsilon clone CD13G12 prokMSA_id:030130 AF441949 clone CD12C2 prokMSA_id:045234 AF441974 epsilon clone CD12G10 prokMSA_id:041682 AF441990 epsilon clone CD12F7 prokMSA_id:037506 AF442005 epsilon clone CD12D10 prokMSA_id:022415 AF442009 clone CD12D3 prokMSA_id:042535 AF442021 epsilon clone CD12H7 prokMSA_id:040845 AF468711 epsilon clone 33-PA84B98 prokMSA_id:028442 AF468738 epsilon clone 33-PA33B00 prokMSA_id:027473 AF468771 epsilon clone 33-FL11B00 prokMSA_id:032400 AF473926 epsilon 128-33 prokMSA_id:043185 AF473974 epsilon 34-49 prokMSA_id:060348 AF535202 epsilon clone CD4C4 prokMSA_id:060349 AF535203 epsilon clone CD4B10 prokMSA_id:058050 AF547419 epsilon clone CL-S77-306 prokMSA_id:025911 AJ132727 CHA3-66 clone CHA3-66 prokMSA_id:087124 AJ561170 epsilon clone RB_OIL 71 prokMSA_id:030802 AY038410 epsilon clone CD5B11 prokMSA_id:019506 AY038516 epsilon clone CD4B9 prokMSA_id:034248 AY038558 clone CD4C8 prokMSA_id:081905 AY187465 clone SB127 prokMSA_id:080787 AY193099 clone SRA3 prokMSA_id:081568 AY193928 clone SB74 prokMSA_id:081667 AY193931 clone SB85 prokMSA_id:086473 AY253433 clone AC8 prokMSA_id:086937 AY279041 clone CS007 prokMSA_id:087815 AY279046 clone CS037 prokMSA_id:087056 AY279048 clone CS006 prokMSA_id:087326 AY279063 clone CS033 prokMSA_id:087789 AY279076 clone CS058 prokMSA_id:087143 AY279077 clone CS060 prokMSA_id:090146 AY327160 clone ZB51 prokMSA_id:011161 L14625 Arcobacter skirrowii str. 449/80 CCUG 10374 . prokMSA_id:011179 L14627 Arcobacter nitrofigilis CCUG 15893 . prokMSA_id:011164 U25805 Arcobacter cryaerophilus ATCC 49615. prokMSA_id:011184 U46505 clone ARCO4. prokMSA_id:046625 Y10501 sp. strain MR25H prokMSA_id:011174 Z94004 clone T43. 2.28.5.3.2 SFS.BARNESII_SUBGROUP 115 seqs 2.28.5.3.2.001 OTU 1 seq prokMSA_id:011195 AF142800 Sulfurospirillum ACE-24. 2.28.5.3.2.002 OTU 1 seq prokMSA_id:011194 AF142835 Sulfurospirillum BURTON-15. 2.28.5.3.2.003 OTU 1 seq prokMSA_id:011193 Y11561 Sulfurospirillum arcachonense str. F1F6 DSMZ 9755 . 2.28.5.3.2.005 OTU 1 seq prokMSA_id:011190 AF038843 Sulfurospirillum barnesii str. SES-3. 2.28.5.3.2.007 OTU 1 seq prokMSA_id:011188 AB015518 str. BD1-5. 2.28.5.3.2.010 OTU 12 seqs prokMSA_id:040099 AB030587 epsilon 1014 prokMSA_id:066096 AB074956 epsilon clone:KB21 prokMSA_id:011192 AF144694 Campylobacter sp. DSM806 prokMSA_id:025462 AF218076 Sulfurospirillum halorespirans strain PCE-M2 prokMSA_id:016474 AF246664 Enrichment culture JMP-9 prokMSA_id:077541 AJ535704 Sulfurospirillum sp. EK7 strain EK7 prokMSA_id:079697 AY189928 Sulfurospirillum sp. JPD-1 prokMSA_id:085047 AY208812 epsilon clone LKC2.127-7 prokMSA_id:011185 U41564 "Geospirillum barnesii". prokMSA_id:011189 U85964 Sulfurospirillum arsenophilum str. MIT-13 ATCC 700056. prokMSA_id:011186 X82931 Dehalospirillum multivorans str. K. prokMSA_id:011187 Y13671 Sulfurospirillum deleyianum str. 5175 ATCC 51133 . 2.28.5.3.2.011 OTU 4 seqs prokMSA_id:017620 AF367482 epsilon VC1.2-cl02 prokMSA_id:037981 AF367483 epsilon VC1.2-cl04 prokMSA_id:042904 AF367487 epsilon VC1.2-cl13 prokMSA_id:023025 AF367488 epsilon VC1.2-cl18 2.28.5.3.2.012 OTU 2 seqs prokMSA_id:019883 AF357198 Sulfurospirillum sp. Am-N prokMSA_id:022148 AF357199 Sulfurospirillum sp. 18.1 2.28.5.3.2.013 OTU 26 seqs prokMSA_id:034308 AB030600 epsilon 1005 prokMSA_id:021738 AB030601 epsilon 1043 prokMSA_id:027914 AB030602 epsilon 1054 prokMSA_id:048041 AB030603 epsilon 1047 prokMSA_id:036148 AB030604 epsilon 1008 prokMSA_id:022082 AB030605 epsilon 1028 prokMSA_id:037769 AB030606 epsilon 1049 prokMSA_id:047752 AB030607 epsilon 1011 prokMSA_id:034916 AB030608 epsilon 1033 prokMSA_id:051819 AB030609 epsilon 1061 prokMSA_id:045975 AB030610 epsilon 1023 prokMSA_id:020917 AB053951 Sulfuricurvum kujiense prokMSA_id:066098 AB074954 epsilon clone:KB8 prokMSA_id:066097 AB074955 epsilon clone:KB2 prokMSA_id:040252 AB080643 Sulfuricurvum kujiense strain:YK-2 prokMSA_id:049390 AB080644 Sulfuricurvum kujiense strain:YK-3 prokMSA_id:041311 AB080645 Sulfuricurvum kujiense strain:YK-4 prokMSA_id:062416 AF529098 epsilon clone FTL212 prokMSA_id:062394 AF529123 epsilon clone FTLM3 prokMSA_id:027290 AJ307940 mRNA clone sipK119 prokMSA_id:093668 AY191468 epsilon clone LKC1.21_5 prokMSA_id:093579 AY191472 epsilon clone LKC1.57_4 prokMSA_id:093473 AY191477 epsilon clone LKC1.58_1 prokMSA_id:093946 AY191481 epsilon clone LKC1.114_6 prokMSA_id:085203 AY208807 epsilon clone LKC2.57-8 prokMSA_id:086045 AY208815 epsilon clone LKC2.270-16 2.28.5.3.2.014 OTU 1 seq prokMSA_id:022264 AF419684 CS_B020 2.28.5.3.2.015 OTU 1 seq prokMSA_id:059210 AY135395 Campylobacter sp. NO2B 2.28.5.3.2.016 OTU 1 seq prokMSA_id:059205 AY135396 Campylobacter sp. NO3A 2.28.5.3.2.017 OTU 1 seq prokMSA_id:024279 AJ249226 DCE10 2.28.5.3.2.018 OTU 5 seqs prokMSA_id:044032 AB030588 epsilon 1018 prokMSA_id:028947 AB030589 epsilon 1058 prokMSA_id:066190 AJ488073 clone IA-22 prokMSA_id:066178 AJ488086 clone IIB-25 prokMSA_id:066170 AJ488095 clone IIIA-8 2.28.5.3.2.019 OTU 1 seq prokMSA_id:030295 AF407391 clone RA9C8 2.28.5.3.2.020 OTU 1 seq prokMSA_id:031093 AF445743 epsilon clone SM2H05 2.28.5.3.2.021 OTU 1 seq prokMSA_id:034363 AF468744 epsilon clone 33-PA80B00 2.28.5.3.2.022 OTU 1 seq prokMSA_id:036019 AF468740 epsilon clone 33-PA4B00 2.28.5.3.2.023 OTU 1 seq prokMSA_id:045042 AF402974 clone 2.28.5.3.2.024 OTU 1 seq prokMSA_id:048323 AF367485 epsilon VC1.2-cl07 2.28.5.3.2.025 OTU 1 seq prokMSA_id:057465 AJ441212 epsilon clone P. palm C/A 138 2.28.5.3.2.026 OTU 2 seqs prokMSA_id:062490 AF513952 Sulfurospirillum sp. clone LA4-B52N prokMSA_id:062489 AF513953 Sulfurospirillum sp. clone LA7-A15N 2.28.5.3.2.027 OTU 1 seq prokMSA_id:064160 AF477855 clone 10-UMH 8% pond 2.28.5.3.2.028 OTU 1 seq prokMSA_id:067795 AF420342 isolate a1b010 2.28.5.3.2.029 OTU 1 seq prokMSA_id:073328 AF367491 epsilon VC1.2-cl31 2.28.5.3.2.030 OTU 1 seq prokMSA_id:075096 AF458287 epsilon ML320J-2 2.28.5.3.2.031 OTU 1 seq prokMSA_id:077916 AB089114 candidate division OP11 clone:Rs-M28 2.28.5.3.2.032 OTU 1 seq prokMSA_id:077971 AY172242 clone 2118 2.28.5.3.2.033 OTU 1 seq prokMSA_id:082067 AY218582 clone KD2-34 2.28.5.3.2.034 OTU 1 seq prokMSA_id:082288 AY218569 clone KD2-120 2.28.5.3.2.035 OTU 1 seq prokMSA_id:083453 AY197399 clone B02R017 2.28.5.3.2.036 OTU 1 seq prokMSA_id:086409 AY197400 clone B02R018 2.28.5.3.2.037 OTU 1 seq prokMSA_id:086434 AY208816 epsilon clone LKC2.270-19 2.28.5.3.2.038 OTU 1 seq prokMSA_id:088543 AB113186 Sulfurospirillum sp. clone:pCIRB-75 2.28.5.3.2.039 OTU 2 seqs prokMSA_id:093761 AB105048 Hydrogenimonas thermophila rrn prokMSA_id:089103 AB113193 Hydrogenomonas thermophilus strain:Ep-1-37-10% 2.28.5.3.2.040 OTU 1 seq prokMSA_id:089389 AY191348 epsilon isolate ODP1176A22X_23_B 2.28.5.3.2.041 OTU 1 seq prokMSA_id:089513 AB113178 epsilon clone:pCIRB-26 2.28.5.3.2.042 OTU 1 seq prokMSA_id:090039 AY327155 clone ZB52 2.28.5.3.2.043 OTU 1 seq prokMSA_id:093636 AY191470 epsilon clone LKC1.57_2 2.28.5.3.2.044 OTU 2 seqs prokMSA_id:095901 AY211677 epsilon clone GoM GC234 615E prokMSA_id:096160 AY211681 epsilon clone GoM GC234 626E 2.28.5.3.2.045 OTU 1 seq prokMSA_id:096633 AJ575962 epsilon clone T3-Hot3-659 2.28.5.3.2.046 OTU 1 seq prokMSA_id:096828 AJ576005 epsilon clone T6-Ph07-987 2.28.5.3.2.047 OTU 1 seq prokMSA_id:097202 AJ575950 epsilon clone T2-PP12-495 2.28.5.3.2.048 OTU 1 seq prokMSA_id:097607 AJ576003 epsilon clone T6-Ph07-984 2.28.5.3.2.049 OTU 1 seq prokMSA_id:098867 AJ575957 epsilon clone T2-PP12-593 2.28.5.3.2.999 poor quality 23 seqs prokMSA_id:047709 AB047121 OCG10 prokMSA_id:048866 AB047122 OCG11 prokMSA_id:037575 AF468710 epsilon clone 33-PA70B98 prokMSA_id:051011 AF468723 epsilon clone 33-PA25B99 prokMSA_id:050721 AF468724 epsilon clone 33-PA63B99 prokMSA_id:028187 AF468754 epsilon clone 33-FL49B98 prokMSA_id:030747 AF468784 epsilon clone 33-FL48B00 prokMSA_id:036377 AF473976 epsilon 34-53 prokMSA_id:072240 AF524868 Dehalospirillum multivorans strain N prokMSA_id:062400 AF529113 epsilon clone FTL9 prokMSA_id:086533 AY084082 Epsilon JDS7 prokMSA_id:084952 AY084083 Epsilon JDS2 prokMSA_id:086585 AY084084 Epsilon JDS3 prokMSA_id:085450 AY084088 Epsilon JDS1 prokMSA_id:066664 AY090129 candidate division OP11 clone IAFDn74 prokMSA_id:060811 AY118143 Dehalospirillum sp. clone OR-M3 prokMSA_id:059137 AY121825 clone ML-33 prokMSA_id:059813 AY133376 clone OB3_60a prokMSA_id:084271 AY197398 clone B02R016 prokMSA_id:082606 AY197407 clone B03R019 prokMSA_id:083841 AY263716 clone FBR2 prokMSA_id:011191 L14632 Campylobacter sp. CCUG 13942. prokMSA_id:011196 U85965 Sulfurospirillum SM-5 str. SM-5. 2.28.5.3.3 BAC.UREOLYTICUS 1 seq 2.28.5.3.3.999 poor quality 1 seq prokMSA_id:011197 L04321 Bacteroides ureolyticus ATCC 33387 . 2.28.5.3.4 CAM.FETUS_SUBGROUP 172 seqs 2.28.5.3.4.004 OTU 30 seqs prokMSA_id:054599 AB066098 Campylobacter lari genes ITS region and 23S and complete strain:CF89-12 prokMSA_id:066989 AF372091 Campylobacter jejuni strain NCTC 11351 prokMSA_id:066985 AF372092 Campylobacter coli strain LMG 6440 prokMSA_id:066980 AF372093 Campylobacter coli strain 98/C053/1 prokMSA_id:066981 AF372094 Campylobacter coli strain 98/C053/2 prokMSA_id:066979 AF372095 Campylobacter coli strain 98/C053/11 prokMSA_id:066978 AF372096 Campylobacter coli strain 98/C053/12 prokMSA_id:066983 AF393202 Campylobacter jejuni strain 98/E600/5 prokMSA_id:066982 AF393203 Campylobacter jejuni strain 98/E599/10 prokMSA_id:066984 AF393204 Campylobacter jejuni strain WH11 prokMSA_id:057384 AF550620 Campylobacter coli strain LMG 9220 prokMSA_id:057383 AF550621 Campylobacter coli strain LMG 15883 prokMSA_id:057382 AF550622 Campylobacter coli strain LMG 15884 prokMSA_id:057381 AF550623 Campylobacter coli strain H99/119 prokMSA_id:057380 AF550624 Campylobacter coli strain H99/155 prokMSA_id:057379 AF550625 Campylobacter coli strain B99/131 prokMSA_id:057378 AF550626 Campylobacter jejuni strain LMG 9217 prokMSA_id:057377 AF550627 Campylobacter jejuni strain LMG 9243 prokMSA_id:055836 AF550628 Campylobacter jejuni strain H99/240 prokMSA_id:057376 AF550629 Campylobacter jejuni strain B99/224 prokMSA_id:057374 AF550630 Campylobacter jejuni strain B99/206 prokMSA_id:057375 AF550631 Campylobacter lari strain LMG 7607 prokMSA_id:074490 AF550633 Campylobacter lari strain LMG 11760 prokMSA_id:057373 AF550634 Campylobacter lari strain LMG 14338 prokMSA_id:063933 AL139075 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 2/6 prokMSA_id:011244 L04316 Campylobacter lari str. VC187; WRI 3034/77 CCUG 23947. prokMSA_id:049562 NC_002163 Campylobacter jejuni complete genome prokMSA_id:011219 Y11763 Campylobacter sp. NCTC 13006. prokMSA_id:011258 Y19244 Campylobacter jejuni subsp. doylei str. SSI 5384-98. prokMSA_id:011214 Z29326 Campylobacter jejuni subsp. jejuni str. TGH 9011 ATCC 43431. 2.28.5.3.4.007 OTU 18 seqs prokMSA_id:056461 AB076675 Campylobacter lanienae prokMSA_id:064363 AB076676 Campylobacter lanienae prokMSA_id:064364 AB076677 Campylobacter lanienae prokMSA_id:011239 AF043422 Campylobacter cf. lanienae UB 992 str. UB 992. prokMSA_id:011204 AF043423 Campylobacter lanienae str. UB 993. prokMSA_id:011240 AF043424 Campylobacter cf. lanienae UB 994 str. UB 994. prokMSA_id:011205 AF043425 Campylobacter lanienae NCTC 13004. prokMSA_id:011233 AF097683 Campylobacter hyointestinalis subsp. lawsonii CCUG 27631. prokMSA_id:053197 AF097684 Campylobacter hyointestinalis subsp. lawsonii strain CHY4 and spacer region prokMSA_id:011234 AF097685 Campylobacter hyointestinalis subsp. lawsonii str. CHY5. prokMSA_id:011235 AF097686 Campylobacter hyointestinalis subsp. lawsonii str. CHY6. prokMSA_id:011236 AF097687 Campylobacter hyointestinalis subsp. lawsonii str. CHY7. prokMSA_id:011237 AF097688 Campylobacter hyointestinalis subsp. lawsonii str. CHY8. prokMSA_id:011238 AF097691 Campylobacter hyointestinalis subsp. hyointestinalis str. SVS3038. prokMSA_id:057346 AF550664 Campylobacter lanienae strain S-K FAVW prokMSA_id:032509 AJ408195 equine intestinal sp. MW08 clone MW08 prokMSA_id:075078 AY165045 Campylobacter lanienae isolate G718b prokMSA_id:086812 AY288304 Campylobacter lanienae 2.28.5.3.4.008 OTU 7 seqs prokMSA_id:022161 AF022768 Campylobacter sputorum complete prokMSA_id:057371 AF550635 Campylobacter sputorum strain LMG 10388 prokMSA_id:056624 AF550636 Campylobacter sputorum strain LMG 11761 prokMSA_id:057370 AF550637 Campylobacter sputorum strain LMG 6617 prokMSA_id:057369 AF550638 Campylobacter sputorum strain CSP-1 prokMSA_id:057372 AF550639 Campylobacter sputorum strain CSP-2 prokMSA_id:011227 X67775 Campylobacter sputorum subsp. sputorum str. S17 ATCC 35980 . 2.28.5.3.4.009 OTU 4 seqs prokMSA_id:011210 AF062490 Campylobacter hominis str. HS-A. prokMSA_id:011211 AF062491 Campylobacter hominis str. HS-B. prokMSA_id:011212 AF062492 Campylobacter hominis str. HS-C. prokMSA_id:036254 AJ251584 Campylobacter hominis strain NCTC 13146 2.28.5.3.4.010 OTU 4 seqs prokMSA_id:056165 AF550656 Campylobacter gracilis strain LMG 7616 prokMSA_id:057351 AF550657 Campylobacter gracilis strain CCUG 13143 prokMSA_id:057352 AF550658 Campylobacter gracilis strain CCUG 27721 prokMSA_id:011209 L37787 Campylobacter gracilis str. WAL 6989 ATCC 33236 . 2.28.5.3.4.013 OTU 14 seqs prokMSA_id:070846 AF393205 Campylobacter upsaliensis strain WH6 prokMSA_id:060770 AF497805 Campylobacter upsaliensis strain LMG 8850 prokMSA_id:055374 AF497806 Campylobacter upsaliensis strain G1104 prokMSA_id:057368 AF550640 Campylobacter upsaliensis strain LMG 8851 prokMSA_id:057366 AF550641 Campylobacter upsaliensis strain LMG 8853 prokMSA_id:057365 AF550642 Campylobacter upsaliensis strain H29 prokMSA_id:057367 AF550643 Campylobacter upsaliensis strain H37 E/1 prokMSA_id:057364 AF550644 Campylobacter upsaliensis strain H53 E/ccda prokMSA_id:057362 AF550645 Campylobacter upsaliensis strain L 461 prokMSA_id:057363 AF550646 Campylobacter helveticus strain LMG 12639 prokMSA_id:057361 AF550647 Campylobacter helveticus strain CCUG 30563 prokMSA_id:057360 AF550648 Campylobacter helveticus strain CCUG 34016 prokMSA_id:057359 AF550649 Campylobacter helveticus strain CCUG 34016 prokMSA_id:011247 U03022 Campylobacter helveticus NCTC 12470 . 2.28.5.3.4.015 OTU 13 seqs prokMSA_id:011200 AF097681 Campylobacter hyointestinalis subsp. hyointestinalis str. 0425. prokMSA_id:011201 AF097682 Campylobacter hyointestinalis subsp. hyointestinalis str. 0943. prokMSA_id:011202 AF097689 Campylobacter hyointestinalis subsp. hyointestinalis NCTC 11608. prokMSA_id:011203 AF097690 Campylobacter hyointestinalis subsp. hyointestinalis str. SVS3035. prokMSA_id:069901 AF219233 Campylobacter fetus MGH 97-2126 prokMSA_id:071368 AF219234 Campylobacter fetus MGH 97-3574 prokMSA_id:070687 AF219235 Campylobacter hyointestinalis prokMSA_id:068798 AF482990 Campylobacter fetus subsp. venerealis complete prokMSA_id:064355 AF499005 Campylobacter hyointestinalis strain H00/108 prokMSA_id:057388 AF550618 Campylobacter fetus subsp. fetus strain F-107/4132 prokMSA_id:057387 AF550619 Campylobacter fetus subsp. fetus strain H00/415 prokMSA_id:020808 AJ306568 Campylobacter fetus subsp. fetus isolate 002\827 prokMSA_id:052782 AJ306569 Campylobacter fetus subsp. fetus isolate 102\804 2.28.5.3.4.016 OTU 1 seq prokMSA_id:021289 E01336 of campylobacter jejuni 2.28.5.3.4.017 OTU 1 seq prokMSA_id:028244 AB030591 epsilon 1068 2.28.5.3.4.018 OTU 1 seq prokMSA_id:032546 AY005038 Campylobacter sp. oral clone BB120 2.28.5.3.4.019 OTU 4 seqs prokMSA_id:057349 AF550660 Campylobacter mucosalis strain ATCC 49352 prokMSA_id:057347 AF550661 Campylobacter mucosalis strain ATCC 49353 prokMSA_id:057348 AF550662 Campylobacter mucosalis strain ATCC 49354 prokMSA_id:056203 AF550663 Campylobacter mucosalis strain ATCC 43265 2.28.5.3.4.020 OTU 1 seq prokMSA_id:049620 AF371867 clone p-2602-9F5 2.28.5.3.4.021 OTU 3 seqs prokMSA_id:057358 AF550650 Campylobacter curvus strain LMG 11034 prokMSA_id:057357 AF550651 Campylobacter curvus strain LMG 11127 prokMSA_id:057354 AF550652 Campylobacter curvus strain LMG 13936 2.28.5.3.4.022 OTU 2 seqs prokMSA_id:057356 AF550653 Campylobacter concisus strain LMG 7545 prokMSA_id:057355 AF550654 Campylobacter concisus strain LMG 13937 2.28.5.3.4.023 OTU 2 seqs prokMSA_id:057353 AF550655 Campylobacter showae strain LMG 12636 prokMSA_id:057350 AF550659 Campylobacter rectus strain LMG 7611 2.28.5.3.4.024 OTU 1 seq prokMSA_id:062488 AF513954 Campylobacter group clone LA7-A3N 2.28.5.3.4.025 OTU 1 seq prokMSA_id:066100 AB074952 epsilon clone:KB16 2.28.5.3.4.026 OTU 1 seq prokMSA_id:067838 AY082468 epsilon clone 44a-B1-40 2.28.5.3.4.027 OTU 1 seq prokMSA_id:067848 AY082456 epsilon clone 44a-B1-1 2.28.5.3.4.028 OTU 1 seq prokMSA_id:069947 AJ276874 Campylobacter faecalis strain 1433 2.28.5.3.4.029 OTU 1 seq prokMSA_id:078064 AB089111 epsilon clone:Rs-M59 2.28.5.3.4.030 OTU 1 seq prokMSA_id:081810 AY218594 clone KD2-79 2.28.5.3.4.031 OTU 1 seq prokMSA_id:082339 AY216452 clone KM61 2.28.5.3.4.032 OTU 1 seq prokMSA_id:084868 AY208810 epsilon clone LKC2.127-32 2.28.5.3.4.033 OTU 1 seq prokMSA_id:088092 AY327877 epsilon clone SF_C11-F3 2.28.5.3.4.034 OTU 1 seq prokMSA_id:091646 AY340842 clone SR_FBR_L85 2.28.5.3.4.035 OTU 1 seq prokMSA_id:096535 AJ575943 epsilon clone T2-PP12-431 2.28.5.3.4.036 OTU 1 seq prokMSA_id:096778 AY375104 clone C80 2.28.5.3.4.999 poor quality 54 seqs prokMSA_id:043736 AB028400 oral AP60-47 prokMSA_id:016326 AF201969 human oral A46 prokMSA_id:028023 AF201970 human oral A47 prokMSA_id:023590 AF302011 Campylobacter fetus PF1875-2000 prokMSA_id:027112 AF468753 epsilon clone 33-PA23B00 prokMSA_id:071496 AH000014 Campylobacter coli VC80 5' segment prokMSA_id:073692 AH001591 Campylobacter jejuni VC79 5' segment prokMSA_id:071313 AH001592 Campylobacter fetus fetus VC78 5' segment prokMSA_id:070269 AH001593 Campylobacter sputorum sputorum VC188 16 S 5' segment prokMSA_id:071924 AH001594 Campylobacter laridis VC187 16 S 5' segment prokMSA_id:011215 AJ000862 Campylobacter jejuni NCTC 11168. prokMSA_id:011216 AJ006477 Campylobacter jejuni NCTC 12500. prokMSA_id:011217 AJ006478 Campylobacter jejuni NCTC 12548. prokMSA_id:011218 AJ006479 Campylobacter jejuni NCTC 12506. prokMSA_id:096362 AJ555133 Campylobacter gracilis prokMSA_id:025013 E01337 of campylobacter jejuni prokMSA_id:011249 L04312 Campylobacter coli str. 1407 CCUG 11283 . prokMSA_id:011246 L04313 Campylobacter curvus ATCC 35224 . prokMSA_id:011220 L04314 Campylobacter fetus ATCC 27374 . prokMSA_id:011257 L04315 Campylobacter jejuni subsp. jejuni CCUG 11284 . prokMSA_id:011241 L04317 Campylobacter rectus str. Tanner 371 ATCC 33238 . prokMSA_id:011232 L04318 Campylobacter sp. prokMSA_id:011213 L04319 Campylobacter sputorum subsp. bubulus ATCC 33491. prokMSA_id:011206 L04320 Campylobacter gracilis str. WAL 6989 ATCC 33236 . prokMSA_id:011229 L04322 Campylobacter concisus str. Tanner 484 ATCC 33237 . prokMSA_id:011224 L06973 Campylobacter rectus CCUG 19168. prokMSA_id:011248 L06974 Campylobacter showae CCUG 3054. prokMSA_id:011221 L06975 Campylobacter showae CCUG 11641. prokMSA_id:011231 L06976 Campylobacter curvus str. C10 Etoh. prokMSA_id:011251 L06977 Campylobacter concisus FDC 288. prokMSA_id:011198 L06978 Campylobacter mucosalis CCUG 6822. prokMSA_id:011230 L14628 Campylobacter upsaliensis CCUG 14913 . prokMSA_id:011255 L14629 Campylobacter sp. CCUG 20705. prokMSA_id:011223 L14630 Campylobacter jejuni subsp. doylei CCUG 24567 . prokMSA_id:011254 L14631 Campylobacter sp. CCUG 18267. prokMSA_id:011222 L14633 Campylobacter fetus subsp. venerealis ATCC 19438 . prokMSA_id:011253 L19738 Campylobacter coli str. RMIT32A CCUG 33450 . prokMSA_id:011252 M55311 Campylobacter sp. str. CLO11847. prokMSA_id:011243 M59073 Campylobacter coli str. VC80; 1407 ATCC 33559 . prokMSA_id:011256 M59298 Campylobacter jejuni subsp. jejuni ATCC 33560 . prokMSA_id:011208 M65009 Campylobacter hyointestinalis NADC 2006. prokMSA_id:011199 M65010 Campylobacter hyointestinalis ATCC 35217 . prokMSA_id:011242 M65011 Campylobacter fetus subsp. venerealis ATCC 19438 . prokMSA_id:011226 M65012 Campylobacter fetus ATCC 27374 . prokMSA_id:011207 M92305 Campylobacter jejuni str. VC79 NCTC 11392. prokMSA_id:037732 M92306 Campylobacter jejuni VC79 midlle segment prokMSA_id:011250 M92308 Campylobacter lari str. VC187; WRI 3034/77 NCTC 11352 . prokMSA_id:070177 M92309 Campylobacter laridis VC187 16 S middle segment prokMSA_id:072576 M92310 Campylobacter laridis VC187 3' segment prokMSA_id:011245 M92311 Campylobacter fetus subsp. fetus str. VC78 CIP 5396 . prokMSA_id:011228 M92314 Campylobacter coli str. VC80; 1407 NCTC 11366 . prokMSA_id:042641 M92316 Campylobacter coli VC80 3' segment prokMSA_id:011225 M92317 Campylobacter sputorum subsp. sputorum str. VC188. prokMSA_id:070725 M92319 Campylobacter sputorum sputorum VC188 3' segment 2.28.5.4 ENVIRONMENTAL_CLONE_A21N_GROUP 13 seqs 2.28.5.4.001 OTU 1 seq prokMSA_id:034401 AF407201 clone GIF10 2.28.5.4.999 poor quality 12 seqs prokMSA_id:059454 AF540806 clone dp10-12 prokMSA_id:059453 AF540807 clone dp10-15 prokMSA_id:059450 AF540809 clone dp10u7 prokMSA_id:059449 AF540810 clone dp10u9 prokMSA_id:059445 AF540811 clone dp10u14 prokMSA_id:056093 AF540812 clone dp10u20 prokMSA_id:059448 AF540813 clone DP11-7 prokMSA_id:059446 AF540815 clone dp11u36 prokMSA_id:059444 AF540816 clone DP10u5 prokMSA_id:011260 X91291 clone G39. prokMSA_id:011259 X91444 clone A21n. prokMSA_id:011261 Z69335 str. s31. 2.28.6 UNCULTURED_MAGNETOTACTIC_CLONES 68 seqs 2.28.6.001 OTU 1 seq prokMSA_id:011287 X80996 clone MP17. 2.28.6.002 OTU 1 seq prokMSA_id:011286 U15116 Pele's Vents clone PVB_13. 2.28.6.003 OTU 1 seq prokMSA_id:011285 X81186 clone CS105. 2.28.6.004 OTU 1 seq prokMSA_id:011284 X81188 clone CS408. 2.28.6.005 OTU 2 seqs prokMSA_id:011280 Y13209 str. rj516. prokMSA_id:011283 Y13215 str. rj12. 2.28.6.006 OTU 3 seqs prokMSA_id:011279 Y13207 str. rj520. prokMSA_id:011281 Y13210 str. rj517. prokMSA_id:011282 Y13211 str. rj58. 2.28.6.007 OTU 1 seq prokMSA_id:011278 AB015540 str. BD2-11. 2.28.6.008 OTU 1 seq prokMSA_id:011277 AF142837 clone BURTON-17. 2.28.6.009 OTU 1 seq prokMSA_id:011274 X81185 clone TB24. 2.28.6.010 OTU 1 seq prokMSA_id:011273 X61606 magnetotactic clone Cs310. 2.28.6.011 OTU 1 seq prokMSA_id:011272 Y13214 str. pa119. 2.28.6.012 OTU 1 seq prokMSA_id:011271 X81184 clone CS981. 2.28.6.013 OTU 1 seq prokMSA_id:011270 X81182 clone CS93. 2.28.6.014 OTU 1 seq prokMSA_id:011269 X61605 magnetotactic clone Cs103. 2.28.6.015 OTU 1 seq prokMSA_id:011268 Y13213 str. pa19. 2.28.6.016 OTU 1 seq prokMSA_id:011267 Y13212 str. pa11. 2.28.6.017 OTU 1 seq prokMSA_id:011266 Y13208 str. rj53. 2.28.6.018 OTU 1 seq prokMSA_id:011265 X81183 clone TB12. 2.28.6.019 OTU 2 seqs prokMSA_id:011262 X61607 magnetotactic clone Cs308. prokMSA_id:011263 X81187 clone CS106. 2.28.6.020 OTU 1 seq prokMSA_id:018643 AJ309526 Red Sea KT-2K34 2.28.6.021 OTU 1 seq prokMSA_id:023990 AY048892 Q3-6C17 2.28.6.022 OTU 1 seq prokMSA_id:027505 AB077357 clone:TYM--20 2.28.6.023 OTU 1 seq prokMSA_id:027771 AF424421 actinobacterium MERTZ_2CM_246 2.28.6.024 OTU 1 seq prokMSA_id:028900 AF424203 delta MERTZ_2CM_26 2.28.6.025 OTU 1 seq prokMSA_id:032873 AJ408214 equine intestinal sp. PL06 clone PL06 2.28.6.026 OTU 1 seq prokMSA_id:034904 AF328204 clone KS67 2.28.6.027 OTU 1 seq prokMSA_id:040926 AJ390457 soil PBS-III-29 2.28.6.028 OTU 1 seq prokMSA_id:049157 AF223301 alpha B2M68 2.28.6.029 OTU 1 seq prokMSA_id:050951 AF234140 #0319-7F1 2.28.6.030 OTU 1 seq prokMSA_id:052165 U86458 marine pN1-33 2.28.6.031 OTU 1 seq prokMSA_id:064948 AY095651 gamma OS3.5K-46 2.28.6.032 OTU 3 seqs prokMSA_id:088217 AF432631 clone N11.18WL prokMSA_id:065443 AY102345 clone a13101 prokMSA_id:090747 AY289481 soil clone DS-33 2.28.6.033 OTU 2 seqs prokMSA_id:065483 AJ278165 SHA-116 prokMSA_id:066915 AJ306786 clone SHA-9 2.28.6.034 OTU 1 seq prokMSA_id:066310 AF507015 Br-z22 2.28.6.035 OTU 1 seq prokMSA_id:080165 AY192989 Gemmatimonas sp. clone BolB1 2.28.6.036 OTU 1 seq prokMSA_id:081623 AY218696 clone KD8-87 2.28.6.037 OTU 1 seq prokMSA_id:089477 AJ567595 clone MBAE42 2.28.6.038 OTU 1 seq prokMSA_id:093302 AJ582052 clone KCM-C-19 2.28.6.039 OTU 1 seq prokMSA_id:093741 AJ581612 clone KCM-B-38 2.28.6.999 poor quality 22 seqs prokMSA_id:024343 AF017800 PVB_OTU_4-like S3C16 prokMSA_id:020930 AF193569 clone n21d prokMSA_id:048346 AF245626 alpha NAC1-17 prokMSA_id:068217 AF365507 clone BM89MF5BD12 prokMSA_id:068062 AF365686 clone BT60DS1BB2 prokMSA_id:060685 AF406320 alpha clone AEGEAN_108_27F prokMSA_id:043309 AF428629 clone CRD99-51 prokMSA_id:020069 AF429182 clone CR99-24-72 prokMSA_id:068489 AF487343 eukaryote clone FL14H09 ; chloroplast chloroplast product prokMSA_id:066312 AF507014 Br-z33 prokMSA_id:030873 AJ223476 Magnetotactic coccus LB52 small subunit strain LB52 prokMSA_id:060154 AJ347062 clone TK36 prokMSA_id:060153 AJ347064 clone TK43 prokMSA_id:070643 AJ390440 soil PBS-II-4 prokMSA_id:058328 AJ489437 clone NS07-48 prokMSA_id:095169 AJ515718 delta clone 26 prokMSA_id:086359 AY197408 clone B03R022 prokMSA_id:011288 L06456 str. magnetotactic isolate MC-1 DeLong. prokMSA_id:011264 U13157 clone PLY16. prokMSA_id:043445 U78944 alpha prokMSA_id:011275 Z77412 str. 1-420 C4. prokMSA_id:011276 Z77515 str. 2-400 C2.14. 2.28.7 ENVIRONMENTAL_CLONE_A8 1 seq 2.28.7.999 poor quality 1 seq prokMSA_id:011289 U08397 gram-negative anaerobic sulfate-reducing clone A8. 2.28.8 UNNAMED_DELTA_PROTEOBACTERIUM 1 seq 2.28.8.999 poor quality 1 seq prokMSA_id:011290 L40767 unnamed delta . 2.29 FUSOBACTERIA_AND_RELATIVES 151 seqs 2.29.1 LPT.BUCCALIS_SUBGROUP 48 seqs 2.29.1.001 OTU 1 seq prokMSA_id:011299 X83517 str. AVG 2115. 2.29.1.002 OTU 2 seqs prokMSA_id:011297 AF189244 Leptotrichia sp. prokMSA_id:049525 AF287811 Leptotrichia sp. oral clone DA069 2.29.1.003 OTU 2 seqs prokMSA_id:011292 Z35304 Streptobacillus moniliformis str. ANL 370-1. prokMSA_id:011293 Z35305 Streptobacillus moniliformis ATCC 14647 . 2.29.1.004 OTU 1 seq prokMSA_id:011291 M58678 Sebaldella termitidis ATCC 33386 . 2.29.1.005 OTU 1 seq prokMSA_id:059574 AY134896 Leptotrichia sp. oral clone EX103 2.29.1.006 OTU 4 seqs prokMSA_id:071541 AF206305 Leptotrichia sp. 'Wee Tee 1999' prokMSA_id:059477 AJ508415 Leptotrichia sp. 0110 93918 strain 0110 93918 prokMSA_id:071467 AY029801 Leptotrichia sp. LB11 prokMSA_id:071923 AY029805 Leptotrichia sp. LB06 2.29.1.007 OTU 1 seq prokMSA_id:020731 AJ289183 E1-K6 2.29.1.008 OTU 2 seqs prokMSA_id:029566 AY078425 Cf. Leptotrichia sp. AMN-1 prokMSA_id:084541 AY267542 Leptotrichia sp. clone FX102-5 2.29.1.009 OTU 1 seq prokMSA_id:031235 AF432138 Leptotrichia sp. oral clone FP036 2.29.1.010 OTU 1 seq prokMSA_id:032203 AY008309 Leptotrichia sp. oral clone BU064 2.29.1.011 OTU 1 seq prokMSA_id:058542 AJ344093 Sneathia sanguinegens strain CCUG 41628T 2.29.1.012 OTU 3 seqs prokMSA_id:071688 AF201978 Human oral AC60 prokMSA_id:037488 AF287813 Leptotrichia sp. oral strain FAC5 prokMSA_id:070629 AY029803 Leptotrichia sp. LB23 2.29.1.013 OTU 1 seq prokMSA_id:038061 AF287814 Leptotrichia sp. oral clone F138 2.29.1.014 OTU 1 seq prokMSA_id:074143 AF366272 Leptotrichia sp. clone DS049 2.29.1.015 OTU 2 seqs prokMSA_id:073108 AF287807 Leptotrichia-like sp. oral clone BB002 prokMSA_id:042256 AF385542 Leptotrichia sp. oral clone FB074 2.29.1.016 OTU 3 seqs prokMSA_id:051437 AF287816 Leptotrichia sp. oral isolate A39FD prokMSA_id:070804 AY029802 Leptotrichia sp. LB16 prokMSA_id:074297 AY029804 Leptotrichia sp. LB32 2.29.1.017 OTU 1 seq prokMSA_id:062228 AF530464 Leptotrichia buccalis 2.29.1.018 OTU 1 seq prokMSA_id:070038 AF385571 Leptotrichia sp. oral clone EI013 2.29.1.019 OTU 2 seqs prokMSA_id:070628 AF366276 Leptotrichia sp. clone DT031 prokMSA_id:083573 AY207053 Leptotrichia sp. oral clone P2PB_51 P1 2.29.1.020 OTU 1 seq prokMSA_id:071850 AY029807 Leptotrichia sp. LB57 2.29.1.021 OTU 1 seq prokMSA_id:072031 AJ289180 E1-K7 2.29.1.022 OTU 2 seqs prokMSA_id:073096 AF366268 Leptotrichia sp. clone DE081 prokMSA_id:074059 AY029806 Leptotrichia sp. LB37 2.29.1.023 OTU 1 seq prokMSA_id:073887 AF385572 Leptotrichia sp. oral clone EI022 2.29.1.024 OTU 1 seq prokMSA_id:074391 AF385518 Leptotrichia sp. oral clone DR011 2.29.1.025 OTU 1 seq prokMSA_id:084244 AY267541 Leptotrichia sp. clone FX70-5 2.29.1.026 OTU 1 seq prokMSA_id:086815 AY278621 Leptotrichia genomosp. C1 2.29.1.027 OTU 1 seq prokMSA_id:092131 AY349385 Leptotrichia sp. oral clone GT020 2.29.1.028 OTU 1 seq prokMSA_id:092134 AY349384 Leptotrichia sp. oral clone GT018 2.29.1.029 OTU 1 seq prokMSA_id:092216 AY349386 Leptotrichia sp. oral clone HE012 2.29.1.030 OTU 1 seq prokMSA_id:093158 AY349387 Leptotrichia sp. oral clone IK040 2.29.1.999 poor quality 5 seqs prokMSA_id:050945 AJ404601 US17 prokMSA_id:011296 L37788 Leptotrichia bucallis. prokMSA_id:011298 L37789 Leptotrichia microbii. prokMSA_id:011295 NONE Leptotrichia buccalis ATCC 14201 . prokMSA_id:011294 X90831 Leptotrichia buccalis NCTC 10249 . 2.29.2 PRG.MODESTUM_SUBGROUP 20 seqs 2.29.2.001 OTU 1 seq prokMSA_id:011301 X54275 Propionigenium modestum. 2.29.2.002 OTU 3 seqs prokMSA_id:011300 X84049 Propionigenium maris str. 10succ1 DSM 9537 . prokMSA_id:042042 Y16799 Propionigenium maris strain DSL-1 prokMSA_id:034513 Y16800 Propionigenium maris strain ML-1 2.29.2.003 OTU 1 seq prokMSA_id:016867 AF195450 Fusobacterium kps68f 2.29.2.004 OTU 2 seqs prokMSA_id:031785 AJ307981 Ilyobacter polytropus DSM 2926 T prokMSA_id:041139 AJ307982 Ilyobacter tartaricus DSM 2382 T 2.29.2.007 OTU 3 seqs prokMSA_id:034833 AF424418 Fusobacteria MERTZ_0CM_274 prokMSA_id:076867 AF550592 Fusobacteria Ko711 prokMSA_id:057456 AJ441229 Fusobacteria clone P. palm C/A 63 2.29.2.008 OTU 1 seq prokMSA_id:057439 AJ441248 Fusobacteria clone P. palm A 11 2.29.2.009 OTU 1 seq prokMSA_id:052873 AJ307980 Ilyobacter insuetus DSM 6831 T 2.29.2.010 OTU 1 seq prokMSA_id:080281 AY193168 Fusobacteria 2.29.2.011 OTU 1 seq prokMSA_id:096208 AY211660 delta clone GoM GC185 515E 2.29.2.012 OTU 1 seq prokMSA_id:096882 AJ575990 Fusobacteria clone T6-Ph07-890 2.29.2.999 poor quality 5 seqs prokMSA_id:038151 AB064324 Anaerobic AG2 prokMSA_id:043757 AB064325 Anaerobic AG23 prokMSA_id:038160 AB064327 Anaerobic G1 prokMSA_id:034718 AF473992 CFB group 68-87 prokMSA_id:072565 AJ011659 DGGE amplificate BS8 2.29.3 CETOBACTERIUM.CETI 11 seqs 2.29.3.001 OTU 1 seq prokMSA_id:011302 X78419 Cetobacterium ceti str. M-3333 NCFB 3026 . 2.29.3.999 poor quality 10 seqs prokMSA_id:070943 AB063306 Anaerobic ANA No.5 prokMSA_id:044450 AB063307 Anaerobic ANA No.6 prokMSA_id:047054 AB063308 Anaerobic ANA No.7 prokMSA_id:033159 AB064326 Anaerobic AG39 prokMSA_id:025691 AB064328 Anaerobic G13 prokMSA_id:033123 AB064329 Anaerobic G17 prokMSA_id:037188 AB064330 Anaerobic G28 prokMSA_id:034129 AB064331 Anaerobic G29 prokMSA_id:017632 AB064332 Anaerobic G30 prokMSA_id:042491 AB064333 Anaerobic G35 2.29.4 FUS.PERFOETENS 1 seq 2.29.4.999 poor quality 1 seq prokMSA_id:011303 M58684 Fusobacterium perfoetens ATCC 29250 . 2.29.5 FUSOBACTERIA_GROUP 71 seqs 2.29.5.001 OTU 1 seq prokMSA_id:011319 X77850 Clostridium rectum NCIMB 10651 . 2.29.5.003 OTU 4 seqs prokMSA_id:011310 AF044948 Fusobacterium necrophorum str. D4. prokMSA_id:034266 AJ295750 Fusobacterium equorum strain horse prokMSA_id:011305 X74407 Fusobacterium necrophorum str. FnS-1; biotype AB. prokMSA_id:011309 X74408 Fusobacterium necrophorum str. FnS40; biotype B. 2.29.5.007 OTU 35 seqs prokMSA_id:079662 AABF010000 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig0364 whole genome shotgun prokMSA_id:080083 AABF010000 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig0377 whole genome shotgun prokMSA_id:080842 AABF010001 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig0319 whole genome shotgun prokMSA_id:028718 AF201977 Human oral AC59 prokMSA_id:030752 AF287805 Fusobacterium sp. oral clone AJ050 prokMSA_id:073310 AF287806 Fusobacterium sp. oral clone R002 prokMSA_id:052269 AF287809 Fusobacterium sp. oral clone CY024 prokMSA_id:020351 AF287810 Fusobacterium sp. oral clone CZ006 prokMSA_id:040432 AF287815 Fusobacterium sp. oral clone I035 prokMSA_id:046013 AF366265 Fusobacterium sp. clone BS019 prokMSA_id:041933 AF385575 Fusobacterium sp. oral clone EU021 prokMSA_id:072547 AF432130 Fusobacterium sp. oral clone BS011 prokMSA_id:039148 AF469404 clone 33-FL60B98 prokMSA_id:068347 AF481217 Fusobacterium nucleatum E9_12 subphylotype-E1 oral isolate prokMSA_id:061061 AF530336 clone cadhufec20d09yvb prokMSA_id:058280 AF543300 Fusobacterium nucleatum prokMSA_id:011316 AJ006964 Fusobacterium nucleatum subsp. vincentii ATCC 49256 . prokMSA_id:011317 AJ006965 Fusobacterium naviforme str. DMS 20699 NCTC 11464. prokMSA_id:034568 AJ133496 Fusobacterium nucleatum subsp. nucleatum prokMSA_id:072688 AJ289177 E1-K4 prokMSA_id:070705 AJ289181 E1-K5 prokMSA_id:059571 AY134897 Fusobacterium sp. oral clone EX123 prokMSA_id:059567 AY134900 Fusobacterium sp. oral clone EX162 prokMSA_id:078038 AY162219 Fusobacterium nucleatum subsp. canifelium strain RMA 12701 prokMSA_id:078238 AY162220 Fusobacterium nucleatum subsp. canifelium strain RMA 12708 prokMSA_id:077942 AY162221 Fusobacterium nucleatum subsp. canifelium strain RMA 1036 prokMSA_id:077649 AY162222 Fusobacterium nucleatum subsp. canifelium strain RMA 11693 prokMSA_id:079057 AY189626 Fusobacteria clone EarCan099 prokMSA_id:086995 AY278616 Fusobacterium genomosp. C1 prokMSA_id:087941 AY278617 Fusobacterium genomosp. C2 prokMSA_id:088459 AY325760 Fusobacterium sp. isolate PCR amplicon RL 2253 prokMSA_id:064396 NC_003454 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 complete genome prokMSA_id:094529 NZ_AABF020 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig0377 whole genome shotgun prokMSA_id:094655 NZ_AABF020 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig0364 whole genome shotgun prokMSA_id:095128 NZ_AABF020 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig0319 whole genome shotgun 2.29.5.008 OTU 1 seq prokMSA_id:034791 AF287808 Leptotrichia-like sp. oral clone BB135 2.29.5.009 OTU 1 seq prokMSA_id:057457 AJ441228 green non-sulfur clone P. palm C/A 25 2.29.5.010 OTU 2 seqs prokMSA_id:079954 AABF010000 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig0306 whole genome shotgun prokMSA_id:094936 NZ_AABF020 Fusobacterium nucleatum subsp. vincentii ATCC 49256 Contig0306 whole genome shotgun 2.29.5.999 poor quality 27 seqs prokMSA_id:065274 AB075660 chicken cecal clone:1E1 prokMSA_id:046711 AF096605 isolate RCA01 prokMSA_id:072772 AF287812 Fusobacterium nucleatum subsp. polymorphum prokMSA_id:046247 AJ002079 Fusobacterium sp. 5' end prokMSA_id:024028 AJ002080 Fusobacterium sp. 3' end prokMSA_id:063177 AJ496327 Fusobacterium gonidoformans prokMSA_id:011329 M58679 Fusobacterium gonidiaformans ATCC 25563 . prokMSA_id:011312 M58680 Fusobacterium mortiferum ATCC 25557 . prokMSA_id:011326 M58681 Fusobacterium russii ATCC 25533 . prokMSA_id:011304 M58683 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 . prokMSA_id:011314 M58685 Fusobacterium simiae ATCC 33568 . prokMSA_id:011322 M58686 Fusobacterium varium ATCC 8501 . prokMSA_id:011313 NONE Fusobacterium mortiferum ATCC 25557 . prokMSA_id:011320 X55401 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 . prokMSA_id:011324 X55402 Fusobacterium nucleatum subsp. polymorphum ATCC 10953 . prokMSA_id:011318 X55403 Fusobacterium nucleatum subsp. fusiforme NCTC 11326 . prokMSA_id:011308 X55404 Fusobacterium nucleatum subsp. animalis NCTC 12276 . prokMSA_id:011315 X55405 Fusobacterium periodonticum str. EK1-15 ATCC 33693 . prokMSA_id:011330 X55406 Fusobacterium alocis ATCC 35896 . prokMSA_id:011306 X55407 Fusobacterium simiae ATCC 33568 . prokMSA_id:011321 X55408 Fusobacterium necrogenes ATCC 25556 . prokMSA_id:011328 X55409 Fusobacterium russii ATCC 25533 . prokMSA_id:011325 X55410 Fusobacterium gonidiaformans ATCC 25563 . prokMSA_id:011323 X55411 Fusobacterium necrophorum subsp. necrophorum ATCC 25286 . prokMSA_id:011327 X55412 Fusobacterium ulcerans NCTC 12111 . prokMSA_id:011307 X55413 Fusobacterium varium NCTC 10560 . prokMSA_id:011311 X55414 Fusobacterium mortiferum ATCC 25557 . 2.30 GRAM_POSITIVE_BACTERIA 26172 seqs 2.30.1 HIGH_G+C_BACTERIA 11562 seqs 2.30.1.1 ENVIRONMENTAL_CLONE_WCHA1-48_GROUP 9 seqs 2.30.1.1.001 OTU 1 seq prokMSA_id:011334 AF050579 clone WCHA1-78. 2.30.1.1.002 OTU 1 seq prokMSA_id:011332 AF050578 clone WCHA1-48. 2.30.1.1.999 poor quality 7 seqs prokMSA_id:011333 AF016747 clone S-36. prokMSA_id:019607 AF428751 clone CR98-5-21 prokMSA_id:084573 AY197405 clone B03R011 prokMSA_id:086640 AY197424 clone B01R003 prokMSA_id:011331 X91295 clone G43. prokMSA_id:011336 X91476 clone A53n. prokMSA_id:011335 X91481 clone A58L. 2.30.1.2 ENVIRONMENTAL_CLONE_MC58_GROUP 24 seqs 2.30.1.2.001 OTU 1 seq prokMSA_id:055565 AF545640 candidate division BD clone GR12 2.30.1.2.002 OTU 1 seq prokMSA_id:075289 AY154502 earthworm intestine clone ew15 2.30.1.2.003 OTU 1 seq prokMSA_id:079617 AY193204 candidate division OP11 clone DA49 2.30.1.2.004 OTU 1 seq prokMSA_id:084724 AY242615 soil clone TcA23 2.30.1.2.005 OTU 2 seqs prokMSA_id:085718 AY242612 soil clone Tc121-B06 prokMSA_id:086617 AY242613 soil clone Tc119-H02 2.30.1.2.999 poor quality 18 seqs prokMSA_id:027835 AF010111 prokMSA_id:036410 AF010117 prokMSA_id:075412 AF431534 actinobacterium clone N12.10WL prokMSA_id:075575 AF431542 actinobacterium clone S21.43WL prokMSA_id:077131 AF431543 actinobacterium clone S21.50WL prokMSA_id:077099 AF431550 actinobacterium clone S36.35SM prokMSA_id:076882 AF431552 actinobacterium clone S37.41SM prokMSA_id:076662 AF431553 actinobacterium clone N42.33PG prokMSA_id:046478 AJ244318 Riz1014 prokMSA_id:056125 AY043856 actinobacterium clone NMW3.137WL prokMSA_id:061378 AY043866 actinobacterium clone NMW3.93WL prokMSA_id:061352 AY043893 actinobacterium clone SMS9.120WL prokMSA_id:055285 AY043898 actinobacterium clone SMS9.137WL prokMSA_id:082745 AY242614 soil clone Tc123-C10 prokMSA_id:083907 AY242616 soil clone TcA6 prokMSA_id:085215 AY242617 soil clone Tc120-E04 prokMSA_id:011337 X68456 Mount Coot-tha region Brisbane Australia 5-10cm depth soil prokMSA_id:011338 X92466 str. 3. 2.30.1.3 ENVIRONMENTAL_CLONE_MC4_GROUP 212 seqs 2.30.1.3.001 OTU 1 seq prokMSA_id:011350 X68454 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.30.1.3.002 OTU 1 seq prokMSA_id:011341 X68459 Mount Coot-tha region Brisbane Australia 5-10cm depth soil 2.30.1.3.003 OTU 1 seq prokMSA_id:026545 AF145825 Metal-contaminated soil clone K20-25 2.30.1.3.004 OTU 1 seq prokMSA_id:030957 AY013608 Banisveld landfill BVA77 2.30.1.3.005 OTU 1 seq prokMSA_id:052274 AF445703 clone SM1H04 2.30.1.3.006 OTU 3 seqs prokMSA_id:066768 AJ458462 Thermoleiphilum album strain ATCC 35263T prokMSA_id:066766 AJ458463 Thermoleiphilum album strain ATCC 35266T prokMSA_id:066765 AJ458464 Thermoleiphilum minutum strain ATCC 35268T 2.30.1.3.007 OTU 1 seq prokMSA_id:074664 AF234121 #0649-1N15 2.30.1.3.008 OTU 2 seqs prokMSA_id:074902 AY154540 earthworm intestine clone lw19 prokMSA_id:075168 AY154642 earthworm cast clone c304 2.30.1.3.009 OTU 1 seq prokMSA_id:074915 AY150896 Rubrobacteridae clone GR35 2.30.1.3.010 OTU 2 seqs prokMSA_id:077249 AY154560 earthworm intestine clone lw65 prokMSA_id:075022 AY154622 earthworm cast clone c272 2.30.1.3.011 OTU 1 seq prokMSA_id:075053 AY154594 earthworm cast clone c238 2.30.1.3.012 OTU 1 seq prokMSA_id:075337 AY154531 earthworm intestine clone ew71 2.30.1.3.013 OTU 1 seq prokMSA_id:075674 AY150873 Rubrobacteridae clone glen99_28 2.30.1.3.014 OTU 1 seq prokMSA_id:075936 AY154620 earthworm cast clone c269 2.30.1.3.015 OTU 1 seq prokMSA_id:076010 AY154532 earthworm intestine clone ew72 2.30.1.3.016 OTU 1 seq prokMSA_id:076408 AY150868 Rubrobacteridae clone glen99_21 2.30.1.3.017 OTU 1 seq prokMSA_id:076413 AY154568 earthworm cast clone c204 2.30.1.3.018 OTU 1 seq prokMSA_id:076503 AY150870 Rubrobacteridae clone glen99_26 2.30.1.3.019 OTU 1 seq prokMSA_id:076569 AY150908 Rubrobacteridae clone WYO23C 2.30.1.3.020 OTU 1 seq prokMSA_id:076701 AY154535 earthworm intestine clone lw04 2.30.1.3.021 OTU 1 seq prokMSA_id:076706 AY150879 Rubrobacteridae clone glen99_17 2.30.1.3.022 OTU 1 seq prokMSA_id:076791 AY154528 earthworm intestine clone ew66 2.30.1.3.023 OTU 1 seq prokMSA_id:076799 AY150904 Rubrobacteridae clone WYO30C 2.30.1.3.024 OTU 1 seq prokMSA_id:076836 AY150882 Rubrobacteridae clone glen99_9 2.30.1.3.025 OTU 1 seq prokMSA_id:076917 AY154586 earthworm cast clone c229 2.30.1.3.026 OTU 1 seq prokMSA_id:078352 AJ535745 Rubrobacteridae clone OF4 2.30.1.3.027 OTU 1 seq prokMSA_id:082956 AY242769 soil clone Tc124-F11 2.30.1.3.028 OTU 2 seqs prokMSA_id:084716 AY242770 soil clone Tc128-91 prokMSA_id:083677 AY242771 soil clone Tc127-77 2.30.1.3.029 OTU 1 seq prokMSA_id:083967 AY242753 soil clone Tc120-E03 2.30.1.3.030 OTU 1 seq prokMSA_id:084738 AY242751 soil clone Tc127-88 2.30.1.3.031 OTU 1 seq prokMSA_id:084739 AY280657 actinobacterium clone G4-17 2.30.1.3.032 OTU 1 seq prokMSA_id:084750 AY242765 soil clone Tc135-228 2.30.1.3.999 poor quality 175 seqs prokMSA_id:039528 AF009992 prokMSA_id:017933 AF010006 prokMSA_id:030428 AF010060 prokMSA_id:043563 AF010065 prokMSA_id:032423 AF010074 prokMSA_id:021770 AF010087 prokMSA_id:018933 AF078186 Grassland soil clone saf1_114 prokMSA_id:017747 AF078196 Grassland soil clone saf1_124 prokMSA_id:025879 AF078235 Grassland soil clone saf2_120 prokMSA_id:041861 AF078236 Grassland soil clone saf2_201 prokMSA_id:036751 AF078237 Grassland soil clone saf2_202 prokMSA_id:039257 AF078238 Grassland soil clone saf2_203 prokMSA_id:023372 AF078261 Grassland soil clone saf2_413 prokMSA_id:020156 AF078264 Grassland soil clone saf2_416 prokMSA_id:037501 AF078282 Grassland soil clone saf3_014 prokMSA_id:023908 AF078297 Grassland soil clone saf3_108 prokMSA_id:032332 AF078314 Grassland soil clone saf3_222 prokMSA_id:048011 AF078322 Grassland soil clone sl1_012 prokMSA_id:029341 AF078335 Grassland soil clone sl1_108 prokMSA_id:032272 AF078346 Grassland soil clone sl1_208 prokMSA_id:051241 AF128694 soil S093 prokMSA_id:043349 AF234116 #0087-1D13 prokMSA_id:068223 AF365501 clone BM89MF5BC3 prokMSA_id:068175 AF365557 clone BT49MF4BC12 prokMSA_id:037040 AF388316 clone Ac33 prokMSA_id:043241 AF388343 clone Ac18 prokMSA_id:017728 AF388346 clone Ac65 prokMSA_id:052143 AF420428 antarctic soil bh7.44 prokMSA_id:034089 AF423221 soil clone 1316-2 prokMSA_id:076492 AF431536 actinobacterium clone C16.44WL prokMSA_id:075292 AF431541 actinobacterium clone S21.29WL prokMSA_id:075329 AF431545 actinobacterium clone S22.14WL prokMSA_id:075989 AF431547 actinobacterium clone N26.138SM prokMSA_id:077046 AF431549 actinobacterium clone C32.28SM prokMSA_id:056181 AF432234 Ellin404 prokMSA_id:071147 AF432260 Ellin442 prokMSA_id:051098 AF432303 firmicute 0%N-0d-5 prokMSA_id:076000 AF432774 clone C47.43PG prokMSA_id:076516 AF432838 clone S53.18PG prokMSA_id:075824 AF432841 clone S53.44PG prokMSA_id:076289 AF432844 clone S54.33PG prokMSA_id:038196 AF446246 candidate division OP8 FL14A09 prokMSA_id:064589 AF467385 actinomycete clone 1561 prokMSA_id:065824 AF507510 soil clone S0142 prokMSA_id:058065 AF547402 actinobacterium clone CL-S77-289 prokMSA_id:017117 AJ225346 High mol%G+C Gram positive species ; clone 22 prokMSA_id:052368 AJ225347 High mol%G+C Gram positive species ; clone 38 prokMSA_id:048905 AJ232708 actinobacterium WB031 prokMSA_id:039005 AJ232848 clone LRS12 prokMSA_id:029631 AJ232849 clone LRS22 prokMSA_id:049386 AJ232850 clone LRS2 prokMSA_id:023092 AJ233563 clone WR1145 prokMSA_id:061712 AJ416231 clone Sta4-02 prokMSA_id:061701 AJ416245 clone Sta4-35 prokMSA_id:057257 AJ518233 clone Mul2P2-30 prokMSA_id:056566 AJ518372 clone Neu4P1-44 prokMSA_id:057111 AJ518424 clone Neu4P3-26 prokMSA_id:057083 AJ518453 clone Neu4P3-68 prokMSA_id:057082 AJ518459 clone Neu4P3-76 prokMSA_id:036946 AY037563 soil clone S013 prokMSA_id:045077 AY037648 soil clone S144 prokMSA_id:044569 AY037663 earthworm cast clone C004 prokMSA_id:043007 AY037684 earthworm cast clone C029 prokMSA_id:050519 AY037686 earthworm cast clone C031 prokMSA_id:036325 AY037691 earthworm cast clone C038 prokMSA_id:026856 AY037716 earthworm cast clone C067 prokMSA_id:030798 AY037723 earthworm cast clone C075 prokMSA_id:035659 AY037732 earthworm cast clone C128 prokMSA_id:020408 AY037740 earthworm cast clone C138 prokMSA_id:019455 AY037748 earthworm cast clone C146 prokMSA_id:061500 AY043718 actinobacterium clone NOW2.105WL prokMSA_id:055527 AY043720 actinobacterium clone NOW2.AAWL prokMSA_id:055991 AY043858 actinobacterium clone NMW3.143WL prokMSA_id:061384 AY043859 actinobacterium clone NMW3.158WL prokMSA_id:061383 AY043860 actinobacterium clone NMW3.170WL prokMSA_id:061379 AY043864 actinobacterium clone NMW3.47WL prokMSA_id:061376 AY043865 actinobacterium clone NMW3.84WL prokMSA_id:061377 AY043867 actinobacterium clone SMW4.105WL prokMSA_id:061368 AY043875 actinobacterium clone SMW4.14WL prokMSA_id:061366 AY043877 actinobacterium clone SMW4.53WL prokMSA_id:061362 AY043880 actinobacterium clone SMW4.95WL prokMSA_id:061357 AY043885 actinobacterium clone NMS8.27WL prokMSA_id:061358 AY043886 actinobacterium clone NMS8.53WL prokMSA_id:061356 AY043888 actinobacterium clone NMS8.80WL prokMSA_id:061355 AY043889 actinobacterium clone NMS8.87WL prokMSA_id:061348 AY043895 actinobacterium clone SMS9.130WL prokMSA_id:061349 AY043896 actinobacterium clone SMS9.133WL prokMSA_id:061344 AY043902 actinobacterium clone SMS9.50WL prokMSA_id:061341 AY043904 actinobacterium clone SMS9.6WL prokMSA_id:061343 AY043905 actinobacterium clone SMS9.65WL prokMSA_id:061339 AY043906 actinobacterium clone SMS9.70WL prokMSA_id:061338 AY043909 actinobacterium clone SMS9.86WL prokMSA_id:055993 AY043910 actinobacterium clone SMS9.92WL prokMSA_id:075925 AY154501 earthworm intestine clone ew12 prokMSA_id:074956 AY154536 earthworm intestine clone lw07 prokMSA_id:075609 AY154584 earthworm cast clone c227 prokMSA_id:079252 AY186807 clone unel15 prokMSA_id:079475 AY186808 clone unel16 prokMSA_id:079139 AY186862 clone uvel22 prokMSA_id:079248 AY186867 clone uvel14 prokMSA_id:079362 AY186869 clone uvel34 prokMSA_id:079441 AY186875 clone uvel30 prokMSA_id:079393 AY186876 clone uvel39 prokMSA_id:083368 AY214713 candidate division NKB19 clone SL2-2-H1F prokMSA_id:086282 AY214756 candidate division NKB19 clone BB-1-E10 prokMSA_id:085244 AY214808 Gemmatimonadetes clone BB-2-F5R prokMSA_id:083663 AY214827 Gemmatimonadetes clone BB-2-F1F prokMSA_id:085168 AY235431 soil clone c10 prokMSA_id:086014 AY235432 soil clone c11 prokMSA_id:085834 AY235434 soil clone c58 prokMSA_id:084364 AY235435 soil clone z12 prokMSA_id:084485 AY235436 soil clone z13 prokMSA_id:082835 AY235437 soil clone z20 prokMSA_id:082651 AY235438 soil clone z35 prokMSA_id:084400 AY242773 soil clone Tc127-83 prokMSA_id:084453 AY242774 soil clone Tc123-E10 prokMSA_id:084049 AY242775 soil clone Tc130-20 prokMSA_id:083186 AY242776 soil clone Tc120-F04 prokMSA_id:082578 AY242777 soil clone Tc122-C08 prokMSA_id:086318 AY242778 soil clone Tc122-F07 prokMSA_id:085503 AY242779 soil clone Tc121-G06 prokMSA_id:083223 AY242780 soil clone Tc122-E08 prokMSA_id:082616 AY242781 soil clone Tc123-B10 prokMSA_id:085032 AY242782 soil clone Tc123-G09 prokMSA_id:084861 AY242783 soil clone Tc120-H04 prokMSA_id:082850 AY242784 soil clone Tc122-D07 prokMSA_id:082714 AY242785 soil clone Tc124-F12 prokMSA_id:082975 AY242787 soil clone Tc124-D12 prokMSA_id:085136 AY242788 soil clone Tc123-H09 prokMSA_id:083630 AY242789 soil clone Tc122-B07 prokMSA_id:082823 AY242790 soil clone Tc119-G02 prokMSA_id:085535 AY242791 soil clone Tc119-B01 prokMSA_id:082837 AY242792 soil clone Tc120-C03 prokMSA_id:086099 AY242793 soil clone Tc127-82 prokMSA_id:083735 AY242794 soil clone Tc127-81 prokMSA_id:084001 AY242795 soil clone Tc127-84 prokMSA_id:082783 AY242796 soil clone Tc127-78 prokMSA_id:086288 AY242797 soil clone Tc128-95 prokMSA_id:086357 AY242798 soil clone Tc128-93 prokMSA_id:086323 AY242799 soil clone Tc129-82 prokMSA_id:084387 AY242800 soil clone Tc129-8 prokMSA_id:084008 AY242801 soil clone Tc132-59 prokMSA_id:085520 AY242802 soil clone Tc132-62 prokMSA_id:084569 AY242803 soil clone Tc133-230 prokMSA_id:084415 AY242804 soil clone Tc133-67 prokMSA_id:086417 AY242805 soil clone Tc133-68 prokMSA_id:085650 AY242806 soil clone Tc133-70 prokMSA_id:083555 AY242807 soil clone Tc133-71 prokMSA_id:082628 AY242808 soil clone Tc134-103 prokMSA_id:084081 AY242809 soil clone Tc134-107 prokMSA_id:083451 AY242810 soil clone Tc134-110 prokMSA_id:083797 AY242811 soil clone Tc134-115 prokMSA_id:085678 AY242812 soil clone Tc134-116 prokMSA_id:083895 AY242813 soil clone Tc135-218 prokMSA_id:085868 AY242814 soil clone Tc135-227 prokMSA_id:086832 AY283137 actinobacterium clone NS-09 prokMSA_id:090295 AY289479 soil clone ABS-14 prokMSA_id:096269 AY395138 clone D18ST prokMSA_id:097288 AY395142 actinobacterium clone D23ST prokMSA_id:097105 AY395150 actinobacterium clone D35ST prokMSA_id:096621 AY395157 clone E13ST prokMSA_id:096509 AY395162 clone F09ST prokMSA_id:096895 AY395191 clone J04K prokMSA_id:096133 AY395208 clone M03K prokMSA_id:011351 X68455 Mount Coot-tha region Brisbane Australia 5-10cm depth soil prokMSA_id:011342 X68457 Mount Coot-tha region Brisbane Australia 5-10cm depth soil prokMSA_id:011339 X68458 Mount Coot-tha region Brisbane Australia 5-10cm depth soil prokMSA_id:011343 X68460 Mount Coot-tha region Brisbane Australia 5-10cm depth soil prokMSA_id:011344 X68461 Mount Coot-tha region Brisbane Australia 5-10cm depth soil prokMSA_id:011347 X78653 clone SMKN1. prokMSA_id:011340 X84490 str. SBR1053. prokMSA_id:011349 X84508 str. SBR1076. prokMSA_id:011348 X84516 str. SBR1087. prokMSA_id:011346 X84541 str. SBR1115. prokMSA_id:011345 X84633 str. SBR2107. 2.30.1.4 RBB.RADIOTOLERANS_GROUP 106 seqs 2.30.1.4.001 OTU 3 seqs prokMSA_id:048248 AF324203 actinobacterium clone pD4 prokMSA_id:011360 AJ243871 Rubrobacter xylanophilus str. RSPS-15. prokMSA_id:011357 X87135 Rubrobacter xylanophilus str. PRD-1 DSM 9941 . 2.30.1.4.002 OTU 1 seq prokMSA_id:011359 X92694 clone TM36. 2.30.1.4.003 OTU 1 seq prokMSA_id:011358 X92707 clone TM220. 2.30.1.4.004 OTU 4 seqs prokMSA_id:011354 AJ243870 Rubrobacter radiotolerans str. RALC-4. prokMSA_id:011353 U65647 Rubrobacter radiotolerans JCM 2153 . prokMSA_id:011352 X87134 Rubrobacter radiotolerans DSM 46359 . prokMSA_id:011355 X98372 Rubrobacter radiotolerans DSM 5868. 2.30.1.4.005 OTU 1 seq prokMSA_id:016588 AY048894 Q3-6C1 2.30.1.4.006 OTU 1 seq prokMSA_id:017393 AF234137 #0319-7D8 2.30.1.4.007 OTU 1 seq prokMSA_id:019651 AF234065 #0319-2J16 2.30.1.4.008 OTU 1 seq prokMSA_id:019731 AF423245 soil clone 288-2 2.30.1.4.009 OTU 2 seqs prokMSA_id:051514 AF277521 Rubrobacter SIC.950 prokMSA_id:022394 AF333082 Rubrobacter sp. clone SIC.7-7 2.30.1.4.010 OTU 1 seq prokMSA_id:023201 AJ309599 Chloroflexaceae group clone DGGE band P6.3 2.30.1.4.011 OTU 1 seq prokMSA_id:028741 AF391983 thermal soil clone YNPFFP89 2.30.1.4.012 OTU 2 seqs prokMSA_id:036731 AF465803 Rubrobacter taiwanensis prokMSA_id:032106 AF479791 Rubrobacter taiwanensis strain LS-286 2.30.1.4.013 OTU 2 seqs prokMSA_id:032989 AF234151 #0319-7H2 prokMSA_id:077945 AJ535739 Rubrobacteridae clone CF5 2.30.1.4.014 OTU 1 seq prokMSA_id:034399 AF391984 thermal soil clone YNPFFP1 2.30.1.4.015 OTU 2 seqs prokMSA_id:058144 AF498683 Ellin301 prokMSA_id:058121 AF498707 Ellin325 2.30.1.4.016 OTU 1 seq prokMSA_id:041603 AJ298579 Hb7-K4 2.30.1.4.017 OTU 1 seq prokMSA_id:047665 AF417897 antarctic soil clone bh3.17 2.30.1.4.018 OTU 3 seqs prokMSA_id:050362 AJ298575 Hb7-K2 prokMSA_id:069907 AJ298576 Hb7-K1 prokMSA_id:071641 AJ298577 Hb7-K3 2.30.1.4.019 OTU 1 seq prokMSA_id:050933 AF170770 Rubrobacter sp. QSSC8L-10 2.30.1.4.020 OTU 1 seq prokMSA_id:059998 AJ440237 Conexibacter woesei strain DSM 14684T 2.30.1.4.021 OTU 1 seq prokMSA_id:060296 AY129786 actinobacterium clone GCPF10 2.30.1.4.022 OTU 1 seq prokMSA_id:068938 AJ309628 Chloroflexaceae group clone P5-C06 2.30.1.4.023 OTU 1 seq prokMSA_id:068939 AJ309623 Chloroflexaceae group clone P4-H04 2.30.1.4.024 OTU 1 seq prokMSA_id:070612 AF423269 soil clone 480-2 2.30.1.4.025 OTU 1 seq prokMSA_id:075312 AJ519396 actinobacterium clone JG37-AG-21 2.30.1.4.026 OTU 1 seq prokMSA_id:075840 AY150888 Rubrobacteridae clone GR33 2.30.1.4.027 OTU 1 seq prokMSA_id:076771 AJ519398 actinobacterium clone JG37-AG-38 2.30.1.4.028 OTU 1 seq prokMSA_id:076922 AY150875 Rubrobacteridae clone glen99_1 2.30.1.4.029 OTU 1 seq prokMSA_id:077189 AF432618 clone C17.11WL 2.30.1.4.030 OTU 1 seq prokMSA_id:079189 AY188328 clone KD8-91 2.30.1.4.031 OTU 1 seq prokMSA_id:082554 AY250887 actinobacterium clone FBP483 2.30.1.4.032 OTU 1 seq prokMSA_id:082709 AY242752 soil clone Tc133-99 2.30.1.4.033 OTU 1 seq prokMSA_id:083650 AY242750 soil clone Tc120-G03 2.30.1.4.034 OTU 1 seq prokMSA_id:084551 AY250873 actinobacterium clone FBP269 2.30.1.4.035 OTU 1 seq prokMSA_id:084637 AY242762 soil clone TcA20 2.30.1.4.036 OTU 1 seq prokMSA_id:084657 AY242749 soil clone Tc121-H06 2.30.1.4.037 OTU 1 seq prokMSA_id:084988 AY242755 soil clone Tc135-229 2.30.1.4.038 OTU 1 seq prokMSA_id:085353 AY242768 soil clone Tc127-74 2.30.1.4.039 OTU 1 seq prokMSA_id:089763 AF443586 clone C-F-15 2.30.1.4.040 OTU 1 seq prokMSA_id:090198 AF443578 clone C-F-12 2.30.1.4.999 poor quality 55 seqs prokMSA_id:023745 AF078223 Grassland soil clone saf1_321 prokMSA_id:032113 AF128713 soil C0139 prokMSA_id:023221 AF234035 #1830-1L19 prokMSA_id:042100 AF234036 #2464-1B3 prokMSA_id:017013 AF234037 #2464-1I15 prokMSA_id:038474 AF234038 #2479-3D6 prokMSA_id:047039 AF234050 #0319-23P1 prokMSA_id:020291 AF234061 #0319-2F3 prokMSA_id:027693 AF234085 #0319-6O5 prokMSA_id:030960 AF234117 #0153-1D13 prokMSA_id:068869 AF345830 green nonsulfur isolate DGGE-band-6 prokMSA_id:054062 AF369722 delta clone 25 prokMSA_id:042898 AF428978 clone CR99-35-20 prokMSA_id:065869 AF507458 soil clone C0221 prokMSA_id:065836 AF507491 soil clone S065 prokMSA_id:065632 AF507763 soil clone S1151 prokMSA_id:046997 AJ232851 clone LRS1 prokMSA_id:051687 AJ298568 MP1-K1 prokMSA_id:037212 AJ298569 MP1-K2 prokMSA_id:037653 AJ298570 MP1-K5 prokMSA_id:045377 AJ298571 MP1-K4 prokMSA_id:033121 AJ298572 MP1-K6 prokMSA_id:026094 AJ298573 MP1-K3 prokMSA_id:024676 AJ298574 MP1-K7 prokMSA_id:039922 AJ298581 Hbr-K5 prokMSA_id:035872 AJ298582 Hbr-K1 prokMSA_id:032069 AJ298583 Hbr-K2 prokMSA_id:040672 AJ298584 Hbr-K6 prokMSA_id:025324 AJ298585 Hbr-K7 prokMSA_id:048466 AJ298587 Hbr-K3 prokMSA_id:054190 AJ298588 Hbr-K4 prokMSA_id:053070 AJ298590 Hbr-K8 prokMSA_id:055768 AJ309639 Chloroflexaceae group clone P5-H06 prokMSA_id:068959 AJ311430 maize rhizosphere c17_68 prokMSA_id:024748 AJ400551 clone Hb6-K1 prokMSA_id:030267 AJ400552 clone Hb6-K19 prokMSA_id:063891 AJ493387 clone m6-2 prokMSA_id:055730 AJ493392 clone m3-1 prokMSA_id:063885 AJ493393 clone m3-5 prokMSA_id:063881 AJ493394 clone m3-6 prokMSA_id:063880 AJ493396 clone m3-3 prokMSA_id:057052 AJ518494 clone Qui2P1-91 prokMSA_id:056995 AJ518569 clone Qui4P2-23a prokMSA_id:061367 AY043876 actinobacterium clone SMW4.34WL prokMSA_id:061361 AY043881 actinobacterium clone SMW4.99WL prokMSA_id:061347 AY043899 actinobacterium clone SMS9.30WL prokMSA_id:061337 AY043911 actinobacterium clone SMS9.98WL prokMSA_id:070737 AY143700 actinobacterium clone Lu14 prokMSA_id:072416 AY143743 Rubrobacteridae clone V87 prokMSA_id:081320 AY216728 soil clone 27 prokMSA_id:083587 AY235433 soil clone c12 prokMSA_id:082735 AY242760 soil clone Tc120-C04 prokMSA_id:084456 AY242772 soil clone Tc124-E12 prokMSA_id:090409 AY323197 actinomycete clone A134-78 prokMSA_id:011356 Z77424 str. 1-420 C58. 2.30.1.5 ATOPOBIUM_GROUP 127 seqs 2.30.1.5.1 ENVIRONMENTAL_CLONE_PAD13_SUBGROUP 3 seqs 2.30.1.5.1.999 poor quality 3 seqs prokMSA_id:011361 D26200 soil from paddy field clone PAD13. prokMSA_id:011363 D26255 soil from soybean field clone FIE2. prokMSA_id:011362 D26259 soil from soybean field clone FIE7. 2.30.1.5.2 ATP.MINUTUM_SUBGROUP 124 seqs 2.30.1.5.2.002 OTU 3 seqs prokMSA_id:035187 AF292372 Atopobium parvulum prokMSA_id:011382 S44206 Atopobium parvulum str. 1246 ATCC 33793 . prokMSA_id:011383 X67150 Atopobium parvulum str. 1246 ATCC 33793 . 2.30.1.5.2.003 OTU 2 seqs prokMSA_id:074853 S44204 Lactobacillus minutus 1454 nt prokMSA_id:011380 X67148 Atopobium minutum NCFB 2751 . 2.30.1.5.2.004 OTU 1 seq prokMSA_id:011379 AB015945 JCM 9981. 2.30.1.5.2.005 OTU 3 seqs prokMSA_id:011374 AF079505 Denitrobacterium detoxificans str. NPOH2. prokMSA_id:011375 AF079506 Denitrobacterium detoxificans str. NPOH3. prokMSA_id:011376 AF079507 Denitrobacterium detoxificans str. MAJ1. 2.30.1.5.2.006 OTU 5 seqs prokMSA_id:011372 AB011817 lentum JCM 9979. prokMSA_id:072748 AF227849 str. 82345 prokMSA_id:016304 AF292375 Eggerthella lenta prokMSA_id:034668 AF304434 Eggerthella sp. MLG043 prokMSA_id:011371 NONE Eggerthella lenta DSM 2243 . 2.30.1.5.2.011 OTU 8 seqs prokMSA_id:011368 AB011814 aerofaciens JCM 7790. prokMSA_id:011369 AB011815 aerofaciens JCM 7791. prokMSA_id:011370 AB011816 aerofaciens JCM 10188. prokMSA_id:074735 AJ131149 Coriobacterium sp. strain CCUG 33917 prokMSA_id:049599 AJ131150 Coriobacterium sp. strain CCUG 33918 prokMSA_id:017210 AJ245919 Collinsella aerofaciens strain G118 prokMSA_id:023981 AJ245920 Collinsella aerofaciens strain H818 prokMSA_id:092970 AY343263 clone DONOR_100 2.30.1.5.2.012 OTU 1 seq prokMSA_id:011367 X79048 Coriobacterium glomerans DSM 20642 . 2.30.1.5.2.013 OTU 1 seq prokMSA_id:011366 AF101240 Slackia exigua str. S-7 ATCC 700122 . 2.30.1.5.2.014 OTU 1 seq prokMSA_id:011364 AF101241 Slackia heliotrinireducens str. RHS 1 NCTC 11029 . 2.30.1.5.2.015 OTU 8 seqs prokMSA_id:036306 AB031059 Collinsella sp. RCA55-4 prokMSA_id:038088 AB031060 Collinsella sp. RCA55-34 prokMSA_id:025274 AB031061 Collinsella sp. RCA55-54 prokMSA_id:024647 AB031062 Collinsella sp. RCA55-56 prokMSA_id:044613 AB037381 Collinsella sp. RCA55-5 prokMSA_id:036110 AB037382 Collinsella sp. RCA55-27 prokMSA_id:037392 AB037384 Collinsella sp. RCA55-49 prokMSA_id:023706 AB037385 Collinsella sp. RCA55-58 2.30.1.5.2.017 OTU 4 seqs prokMSA_id:025658 AF287760 Atopobium sp. oral clone C019 prokMSA_id:030853 AF292371 Atopobium rimae prokMSA_id:011381 S44205 Atopobium rimae str. VPI D140H-11A NCFB 2896 . prokMSA_id:011384 X67149 Atopobium rimae str. VPI D140H-11A NCFB 2896 . 2.30.1.5.2.018 OTU 2 seqs prokMSA_id:046672 AF376426 ckncm193-F4M.1A3 prokMSA_id:026994 AF376455 ckncm222-F4M.2B5 2.30.1.5.2.019 OTU 1 seq prokMSA_id:027160 AF371712 clone p-3423-SwA2 2.30.1.5.2.020 OTU 1 seq prokMSA_id:029393 AF292374 Olsenella profusa 2.30.1.5.2.021 OTU 1 seq prokMSA_id:031818 AJ245921 Coriobacterium sp. EKSO3 strain EKSO3 2.30.1.5.2.022 OTU 1 seq prokMSA_id:032126 AF371713 clone p-275-o5 2.30.1.5.2.023 OTU 1 seq prokMSA_id:035301 AJ251324 Atopobium oviles strain A2 2.30.1.5.2.024 OTU 3 seqs prokMSA_id:046592 AF292373 Olsenella uli prokMSA_id:035353 AY005814 Olsenella uli prokMSA_id:086158 AY244985 rumen clone BS34 2.30.1.5.2.025 OTU 1 seq prokMSA_id:037460 AJ408156 equine intestinal sp. ML10 clone ML10 2.30.1.5.2.026 OTU 2 seqs prokMSA_id:046935 AB031063 Collinsella sp. RCA56-68 prokMSA_id:038784 AB037383 Collinsella sp. RCA56-80 2.30.1.5.2.027 OTU 1 seq prokMSA_id:039422 AF276453 clone RFLP 21E 2.30.1.5.2.028 OTU 2 seqs prokMSA_id:041154 AF376399 ckncm166-F3M.2C3 prokMSA_id:045747 AF376451 ckncm218-F4M.1H6 2.30.1.5.2.029 OTU 1 seq prokMSA_id:042186 AB034096 rumen 4C3d-3 2.30.1.5.2.030 OTU 1 seq prokMSA_id:042971 AB062844 clone:BCf9-11 2.30.1.5.2.032 OTU 1 seq prokMSA_id:051091 AX003092 1 from Patent WO9935240 2.30.1.5.2.033 OTU 1 seq prokMSA_id:060552 AF426827 Olsenella sp. clone 1+7-15 2.30.1.5.2.034 OTU 1 seq prokMSA_id:075442 AJ534681 actinobacterium clone S15A-MN100 2.30.1.5.2.035 OTU 1 seq prokMSA_id:076995 AJ534678 actinobacterium clone S15A-MN25 2.30.1.5.2.036 OTU 1 seq prokMSA_id:077607 AB089070 Actinobacteridae clone:Rs-D41 2.30.1.5.2.037 OTU 1 seq prokMSA_id:078283 AB089077 Actinobacteridae clone:Rs-J59 2.30.1.5.2.038 OTU 1 seq prokMSA_id:078309 AB089069 Actinobacteridae clone:Rs-H69 2.30.1.5.2.039 OTU 1 seq prokMSA_id:078335 AB089074 Actinobacteridae clone:Rs-J10 2.30.1.5.2.040 OTU 4 seqs prokMSA_id:086930 AY288517 Eggerthella hongkongensis prokMSA_id:088357 AY321959 Eggerthella hongkongensis strain HKU11 prokMSA_id:089079 AY321960 Eggerthella hongkongensis strain HKU12 prokMSA_id:088909 AY321961 Eggerthella hongkongensis strain HKU13 2.30.1.5.2.041 OTU 1 seq prokMSA_id:087668 AY278623 Olsenella genomosp. C1 2.30.1.5.2.045 OTU 11 seqs prokMSA_id:089677 AY269020 Atopobium vaginae clone FX26-1 prokMSA_id:090199 AY269022 Atopobium vaginae clone FX96-1 prokMSA_id:089586 AY269024 Atopobium vaginae clone FX103-1 prokMSA_id:088825 AY269026 Atopobium vaginae clone FX131-1 prokMSA_id:090724 AY269027 Atopobium vaginae clone FX135-1 prokMSA_id:088516 AY269029 Atopobium vaginae clone FX184-1 prokMSA_id:089795 AY269030 Atopobium vaginae clone FX54-5 prokMSA_id:090135 AY269031 Atopobium vaginae clone FX119-5 prokMSA_id:088611 AY269032 Atopobium vaginae clone FX148-5 prokMSA_id:088403 AY269033 Atopobium vaginae clone FX162-5 prokMSA_id:043946 Y17195 Atopobium sp. strain CCUG 38953 2.30.1.5.2.046 OTU 1 seq prokMSA_id:089460 AY321958 Eggerthella hongkongensis strain HKU14 2.30.1.5.2.047 OTU 1 seq prokMSA_id:090042 AY269028 Atopobium vaginae clone FX144-1 2.30.1.5.2.048 OTU 1 seq prokMSA_id:090399 AY269025 Atopobium vaginae clone FX124-1 2.30.1.5.2.049 OTU 1 seq prokMSA_id:091813 AY345508 clone W4A-A56 2.30.1.5.2.050 OTU 1 seq prokMSA_id:092272 AY343241 clone REC6M_76 2.30.1.5.2.051 OTU 3 seqs prokMSA_id:092581 AY343239 clone REC6M_12 prokMSA_id:092454 AY343240 clone REC6M_41 prokMSA_id:093013 AY343262 clone DONOR_14 2.30.1.5.2.052 OTU 1 seq prokMSA_id:094574 AJ583196 Actinobacterium clone S15B-MN49 2.30.1.5.2.053 OTU 1 seq prokMSA_id:095654 AY160874 clone COB P3-21 2.30.1.5.2.054 OTU 1 seq prokMSA_id:098737 AY388424 clone Adhuleft01 2.30.1.5.2.999 poor quality 34 seqs prokMSA_id:011365 AB019260 Cryptobacterium curtum str. 12-3 ATCC 700683. prokMSA_id:042300 AB028444 oral RP55-47 prokMSA_id:062099 AB064862 firmicute clone:NO1H5 prokMSA_id:062091 AB064871 Collinsella sp. clone:NB2F5 prokMSA_id:062087 AB064878 Collinsella sp. clone:NS4A11 prokMSA_id:062038 AB064935 Collinsella sp. CB20 prokMSA_id:062030 AB064936 Collinsella sp. CB52 prokMSA_id:069288 AB080902 Eggerthella sp. CJ88 prokMSA_id:040427 AF261810 manure pit P327 prokMSA_id:043307 AF376428 ckncm195-F4M.1A10 prokMSA_id:022178 AF376436 ckncm203-F4M.1C9 prokMSA_id:068593 AF486677 clone W6-38-SC1-098 prokMSA_id:068589 AF486678 clone W6-38-SC1-099 prokMSA_id:068583 AF486688 clone W6-38-SC1-110 prokMSA_id:068580 AF486690 clone W6-38-SC1-112 prokMSA_id:044412 AJ418978 clone k063 prokMSA_id:021640 AJ418983 clone k076 prokMSA_id:031639 AJ418987 clone k087 prokMSA_id:017799 AJ419025 clone kl065 prokMSA_id:056996 AJ518574 clone Qui4P2-29 prokMSA_id:081185 AJ549099 clone E95 prokMSA_id:082050 AJ549105 clone E25 prokMSA_id:081262 AJ549106 clone E13 prokMSA_id:037986 AY006497 rumen prokMSA_id:019769 AY006902 rumen prokMSA_id:055983 AY122340 clone III-24 prokMSA_id:088148 AY245481 ML21_DSV10 prokMSA_id:097330 AY388411 clone Adhuright30 prokMSA_id:097772 AY388445 clone Adhuleft63 prokMSA_id:011378 L34620 fossor ATCC 43386 . prokMSA_id:011377 M59059 Atopobium minutum ATCC 33267 . prokMSA_id:011373 U43492 str. nitropropanol-degrading NPOH1. prokMSA_id:030151 U81648 clone vadinBA25 prokMSA_id:048449 U81772 clone vadinIA31 2.30.1.6 ACIDIMICROBIUM_GROUP 355 seqs 2.30.1.6.1 ENVIRONMENTAL_CLONE_BDA1-5_SUBGROUP 8 seqs 2.30.1.6.1.001 OTU 2 seqs prokMSA_id:053645 AH000030 sp. amplified from marine plankton 5' end clone BDA1-5A prokMSA_id:011388 L11944 Sargasso Sea 10m depth clone BDA1-5. 2.30.1.6.1.999 poor quality 6 seqs prokMSA_id:044606 L11945 sp. amplified from marine plankton 3' end clone BDA1-5B prokMSA_id:011390 L11966 Pacific Ocean station 16 100m depth clone prokMSA_id:011389 L11969 Pacific Ocean station 25 100m depth clone prokMSA_id:011385 U08386 clone A21. prokMSA_id:011386 U08395 clone A55. prokMSA_id:011387 X89317 clone 4211. 2.30.1.6.2 A.FERROOXIDANS_SUBGROUP 347 seqs 2.30.1.6.2.001 OTU 1 seq prokMSA_id:011421 X82546 Microthrix parvicella. 2.30.1.6.2.002 OTU 1 seq prokMSA_id:011419 U75647 Acidimicrobium ferrooxidans str. ICP DSM 10331 . 2.30.1.6.2.003 OTU 1 seq prokMSA_id:011418 AJ241005 clone Sva0996. 2.30.1.6.2.004 OTU 1 seq prokMSA_id:011417 AJ232695 clone WB017. 2.30.1.6.2.005 OTU 3 seqs prokMSA_id:011407 AJ232684 clone WB006. prokMSA_id:011415 AJ232693 clone WB015. prokMSA_id:011416 AJ232694 clone WB016. 2.30.1.6.2.006 OTU 1 seq prokMSA_id:011414 AJ232692 clone WB014. 2.30.1.6.2.007 OTU 2 seqs prokMSA_id:011404 AJ232681 clone WB003. prokMSA_id:011413 AJ232690 clone WB012. 2.30.1.6.2.008 OTU 1 seq prokMSA_id:011412 AJ232689 clone WB011. 2.30.1.6.2.009 OTU 1 seq prokMSA_id:011411 AJ232688 clone WB010. 2.30.1.6.2.010 OTU 1 seq prokMSA_id:011410 AJ232687 clone WB009. 2.30.1.6.2.011 OTU 1 seq prokMSA_id:011409 AJ232686 clone WB008. 2.30.1.6.2.012 OTU 1 seq prokMSA_id:011408 AJ232685 clone WB007. 2.30.1.6.2.013 OTU 1 seq prokMSA_id:011405 AJ232682 clone WB004. 2.30.1.6.2.014 OTU 1 seq prokMSA_id:011406 AJ232683 clone WB005. 2.30.1.6.2.015 OTU 1 seq prokMSA_id:011403 Y11555 DA079 2.30.1.6.2.016 OTU 3 seqs prokMSA_id:011402 AF186411 clone UC32f. prokMSA_id:056660 AJ347027 clone TK14 prokMSA_id:060177 AJ347031 clone TK39 2.30.1.6.2.017 OTU 3 seqs prokMSA_id:011401 X92697 clone TM81. prokMSA_id:011394 X92703 clone TM208. prokMSA_id:011398 X92709 clone TM232. 2.30.1.6.2.018 OTU 1 seq prokMSA_id:011400 X92696 clone TM62. 2.30.1.6.2.019 OTU 1 seq prokMSA_id:011399 X92695 clone TM56. 2.30.1.6.2.020 OTU 1 seq prokMSA_id:011397 X92708 clone TM226. 2.30.1.6.2.021 OTU 1 seq prokMSA_id:011396 X92705 clone TM213. 2.30.1.6.2.022 OTU 1 seq prokMSA_id:011395 X92704 clone TM210. 2.30.1.6.2.023 OTU 1 seq prokMSA_id:011393 AF047642 clone TRA2-10. 2.30.1.6.2.024 OTU 1 seq prokMSA_id:016808 AF379687 clone SL12 2.30.1.6.2.025 OTU 1 seq prokMSA_id:017777 AY038453 clone CD3F7 2.30.1.6.2.026 OTU 1 seq prokMSA_id:019913 AF333550 clone R219 2.30.1.6.2.027 OTU 1 seq prokMSA_id:056590 AF523911 clone RCP1-34 2.30.1.6.2.028 OTU 1 seq prokMSA_id:021100 AF259646 CtaxTah-32 2.30.1.6.2.029 OTU 2 seqs prokMSA_id:039516 AF418962 clone HTG5 prokMSA_id:021407 AF418963 clone HTG6 2.30.1.6.2.030 OTU 1 seq prokMSA_id:021549 AF259644 CtaxTah-23 2.30.1.6.2.031 OTU 2 seqs prokMSA_id:022795 AF337862 gold mine D7 prokMSA_id:041102 AF337882 gold mine D27 2.30.1.6.2.032 OTU 1 seq prokMSA_id:024260 AF234754 sludge S18 2.30.1.6.2.033 OTU 1 seq prokMSA_id:025801 AF440704 firmicute ARCT1-16 2.30.1.6.2.034 OTU 1 seq prokMSA_id:025936 AJ277692 ARFS-13 2.30.1.6.2.035 OTU 1 seq prokMSA_id:027431 AF333533 gamma clone R211 2.30.1.6.2.036 OTU 1 seq prokMSA_id:027816 AJ277699 ARFS-33 2.30.1.6.2.037 OTU 1 seq prokMSA_id:029204 AF333524 actinobacterium clone R106 2.30.1.6.2.039 OTU 1 seq prokMSA_id:030023 AF333523 actinobacterium clone R19 2.30.1.6.2.040 OTU 1 seq prokMSA_id:031042 AF226237 maize root Zmrc215 2.30.1.6.2.041 OTU 1 seq prokMSA_id:032396 AF434943 sponge symbiont RSWS15 2.30.1.6.2.042 OTU 1 seq prokMSA_id:034316 AF424322 MERTZ_21CM_207 2.30.1.6.2.043 OTU 1 seq prokMSA_id:035149 AJ007641 clone 25/4-10 2.30.1.6.2.044 OTU 4 seqs prokMSA_id:051619 AF225450 BA46 prokMSA_id:037993 AF251436 Ferromicrobium acidophilum prokMSA_id:063313 AF523906 clone RCP1-77 prokMSA_id:058323 AF543498 clone ASL4 2.30.1.6.2.045 OTU 1 seq prokMSA_id:058319 AY140240 Acidimicrobium sp. Y0018 2.30.1.6.2.046 OTU 1 seq prokMSA_id:038978 AF170776 actinobacterium QSSC8L-16 2.30.1.6.2.047 OTU 1 seq prokMSA_id:039075 AF333527 actinobacterium clone R130 2.30.1.6.2.048 OTU 1 seq prokMSA_id:041413 AF379693 clone SL22 2.30.1.6.2.049 OTU 1 seq prokMSA_id:043490 AF225451 BA84 2.30.1.6.2.050 OTU 1 seq prokMSA_id:043498 AF434969 sponge symbiont JAWS11 2.30.1.6.2.051 OTU 2 seqs prokMSA_id:053975 AF234141 #0319-7F18 prokMSA_id:045131 AF234146 #0319-7G19 2.30.1.6.2.052 OTU 2 seqs prokMSA_id:046283 AJ344205 isolate LES-171 prokMSA_id:055980 AJ507792 clone LES-171 2.30.1.6.2.053 OTU 1 seq prokMSA_id:046450 AF328194 clone KS53 2.30.1.6.2.054 OTU 6 seqs prokMSA_id:046548 AF316678 Crater Lake CL500-29 prokMSA_id:096440 AJ575507 actinobacterium clone S5 prokMSA_id:097970 AJ575512 actinobacterium clone S11 prokMSA_id:098284 AJ575537 actinobacterium clone D1 prokMSA_id:097873 AJ575557 actinobacterium clone NO5 prokMSA_id:097454 AJ575558 actinobacterium clone NO6 2.30.1.6.2.055 OTU 1 seq prokMSA_id:047937 AJ277687 ARFS-2 2.30.1.6.2.056 OTU 1 seq prokMSA_id:048649 AF391981 thermal soil clone YNPFFP40 2.30.1.6.2.057 OTU 1 seq prokMSA_id:056545 AF454307 actinobacterium clone ML817J-10 2.30.1.6.2.059 OTU 3 seqs prokMSA_id:029651 AF333525 actinobacterium clone R122 prokMSA_id:060183 AJ347026 clone TK06 prokMSA_id:060151 AJ347072 clone TK99 2.30.1.6.2.060 OTU 1 seq prokMSA_id:060626 AF406552 firmicute clone AEGEAN_182 2.30.1.6.2.061 OTU 3 seqs prokMSA_id:060637 AF406537 firmicute clone AEGEAN_113 prokMSA_id:060629 AF406545 firmicute clone AEGEAN_241 prokMSA_id:060627 AF406548 firmicute clone AEGEAN_247 2.30.1.6.2.063 OTU 2 seqs prokMSA_id:063831 AF454303 actinobacterium clone ML316M-15 prokMSA_id:062706 AF507850 actinobacterium clone ML617.5J-60 2.30.1.6.2.064 OTU 1 seq prokMSA_id:063126 AY093455 clone MB-A2-100 2.30.1.6.2.065 OTU 1 seq prokMSA_id:063226 AF524000 clone FW103 2.30.1.6.2.066 OTU 1 seq prokMSA_id:063302 AF523910 clone RCP1-9 2.30.1.6.2.067 OTU 1 seq prokMSA_id:063303 AF523916 clone RCP2-2 2.30.1.6.2.068 OTU 1 seq prokMSA_id:063304 AF523915 clone RCP2-57 2.30.1.6.2.069 OTU 1 seq prokMSA_id:063305 AF523914 clone RCP1-33 2.30.1.6.2.070 OTU 1 seq prokMSA_id:063306 AF523912 clone RCP1-37 2.30.1.6.2.071 OTU 1 seq prokMSA_id:063307 AF523913 clone RCP2-105 2.30.1.6.2.072 OTU 1 seq prokMSA_id:063308 AF523909 clone RCP1-83 2.30.1.6.2.073 OTU 1 seq prokMSA_id:063310 AF523907 clone RCP1-56 2.30.1.6.2.074 OTU 1 seq prokMSA_id:063311 AF523908 clone RCP1-68 2.30.1.6.2.075 OTU 1 seq prokMSA_id:065445 AY102341 clone a13156 2.30.1.6.2.076 OTU 1 seq prokMSA_id:065457 AY102328 clone a13132 2.30.1.6.2.077 OTU 1 seq prokMSA_id:065467 AY102317 clone a13110 2.30.1.6.2.078 OTU 1 seq prokMSA_id:072512 AJ277690 ARFS-6 2.30.1.6.2.079 OTU 3 seqs prokMSA_id:077097 AY164382 actinobacterium clone BLIB-69 prokMSA_id:075183 AY164401 actinobacterium clone DLIB-26 prokMSA_id:084728 AY226240 actinobacterium clone BBBB-29 2.30.1.6.2.080 OTU 1 seq prokMSA_id:075499 AJ519394 actinobacterium clone JG37-AG-8 2.30.1.6.2.081 OTU 1 seq prokMSA_id:075692 AY150906 Acidimicrobidae clone WYO24C 2.30.1.6.2.082 OTU 1 seq prokMSA_id:075774 AJ532727 clone JG34-KF-316 2.30.1.6.2.083 OTU 1 seq prokMSA_id:076327 AY150903 Acidimicrobidae clone WYO16C 2.30.1.6.2.084 OTU 1 seq prokMSA_id:079134 AF382122 clone ZA3409c 2.30.1.6.2.085 OTU 1 seq prokMSA_id:079343 AF382133 clone ZA3618c 2.30.1.6.2.086 OTU 1 seq prokMSA_id:079537 AF382135 clone ZA3612c 2.30.1.6.2.087 OTU 1 seq prokMSA_id:079861 AY192288 actinobacterium clone P2-1H 2.30.1.6.2.088 OTU 3 seqs prokMSA_id:080472 AJ538044 actinobacterium clone CF11 prokMSA_id:079869 AJ538055 actinobacterium clone OF31 prokMSA_id:093175 AJ581630 Actinobacterium clone KCM-C-53 2.30.1.6.2.089 OTU 1 seq prokMSA_id:080675 AF468297 clone ARKIA-43 2.30.1.6.2.090 OTU 1 seq prokMSA_id:081283 AY218559 clone KD1-32 2.30.1.6.2.091 OTU 1 seq prokMSA_id:083617 AY242629 soil clone Tc135-220 2.30.1.6.2.092 OTU 1 seq prokMSA_id:083816 AY274140 clone D134 2.30.1.6.2.093 OTU 1 seq prokMSA_id:084258 AY221045 clone CCM13a 2.30.1.6.2.094 OTU 2 seqs prokMSA_id:084931 AY242608 soil clone Tc133-65 prokMSA_id:085000 AY242609 soil clone Tc132-61 2.30.1.6.2.095 OTU 2 seqs prokMSA_id:085141 AY242610 soil clone Tc135-222 prokMSA_id:086156 AY242611 soil clone Tc120-D04 2.30.1.6.2.096 OTU 1 seq prokMSA_id:085916 AY226312 actinobacterium clone DBBB-76 2.30.1.6.2.097 OTU 1 seq prokMSA_id:086141 AJ555217 actinomycete clone AOF4 2.30.1.6.2.098 OTU 1 seq prokMSA_id:086166 AY242628 soil clone Tc119-D02 2.30.1.6.2.099 OTU 1 seq prokMSA_id:086545 AY250866 actinobacterium clone FBP234 2.30.1.6.2.100 OTU 1 seq prokMSA_id:091257 AY344421 clone K2-30-12 2.30.1.6.2.101 OTU 1 seq prokMSA_id:092331 AY354154 clone pIR3BE05 2.30.1.6.2.102 OTU 1 seq prokMSA_id:094120 AJ581629 Actinobacterium clone KCM-C-101 2.30.1.6.2.103 OTU 1 seq prokMSA_id:094128 AJ581606 Actinobacterium clone KCM-B-37 2.30.1.6.2.104 OTU 1 seq prokMSA_id:094227 AJ581605 Actinobacterium clone KCM-B-10 2.30.1.6.2.106 OTU 5 seqs prokMSA_id:061728 AJ416213 clone Sta2-34 prokMSA_id:096159 AJ575504 actinobacterium clone S1 prokMSA_id:097216 AJ575505 actinobacterium clone S2 prokMSA_id:098697 AJ575506 actinobacterium clone S4 prokMSA_id:098733 AJ575535 actinobacterium clone NM2 2.30.1.6.2.107 OTU 1 seq prokMSA_id:097387 AJ575529 actinobacterium clone N2 2.30.1.6.2.999 poor quality 210 seqs prokMSA_id:028924 AF016527 HRS-23 prokMSA_id:039101 AF078318 Grassland soil clone sl1_004 prokMSA_id:039539 AF078341 Grassland soil clone sl1_202 prokMSA_id:029405 AF128655 soil S085 prokMSA_id:042450 AF128723 soil C042 prokMSA_id:025604 AF128732 soil C066 prokMSA_id:035644 AF186441 sponge symbiont PAWS51 prokMSA_id:025061 AF234042 #0324-1B1 prokMSA_id:020220 AF268292 firmicute ESR 8 prokMSA_id:028842 AF332300 clone T26-10 prokMSA_id:049327 AF337200 clone LCo25 prokMSA_id:050319 AF337201 clone LCo26 prokMSA_id:043662 AF337209 clone LCo73 prokMSA_id:026700 AF337214 clone LCo79 prokMSA_id:029015 AF353294 Tui2-31 prokMSA_id:068297 AF361671 clone MN12BT3-41 prokMSA_id:041355 AF367391 actinobacterium clone D064 prokMSA_id:060663 AF406477 firmicute clone AEGEAN_113_27F prokMSA_id:060662 AF406478 firmicute clone AEGEAN_275_27F prokMSA_id:018273 AF428601 clone CRD99-23 prokMSA_id:025376 AF428609 clone CRD99-31 prokMSA_id:059397 AF428625 clone CRD99-47 prokMSA_id:026216 AF428631 clone CRD99-53 prokMSA_id:050616 AF428666 clone CRP99-12 prokMSA_id:048814 AF428677 clone CRP99-23 prokMSA_id:045532 AF428679 clone CRP99-25 prokMSA_id:033642 AF428690 clone CRP99-36 prokMSA_id:020685 AF428693 clone CRP99-39 prokMSA_id:027353 AF428812 clone CR98-24-06 prokMSA_id:024236 AF428819 clone CR98-24-13 prokMSA_id:041624 AF428823 clone CR98-24-17 prokMSA_id:052025 AF428825 clone CR98-24-19 prokMSA_id:059389 AF428854 clone CR98-24-48 prokMSA_id:045013 AF428865 clone CR98-24-59 prokMSA_id:028759 AF428872 clone CR98-24-66 prokMSA_id:022335 AF428900 clone CR98-35-18 prokMSA_id:031324 AF428918 clone CR98-35-36 prokMSA_id:027526 AF428919 clone CR98-35-37 prokMSA_id:022947 AF428939 clone CR98-35-57 prokMSA_id:045452 AF428958 clone CR98-35-76 prokMSA_id:041913 AF428987 clone CR99-35-29 prokMSA_id:051493 AF428994 clone CR99-35-36 prokMSA_id:031431 AF428999 clone CR99-35-41 prokMSA_id:049074 AF429030 clone CR99-35-72 prokMSA_id:018514 AF429061 clone CR99-7-27 prokMSA_id:023311 AF429090 clone CR99-7-56 prokMSA_id:030301 AF429131 clone CR99-24-21 prokMSA_id:019252 AF429135 clone CR99-24-25 prokMSA_id:042814 AF429136 clone CR99-24-26 prokMSA_id:024805 AF429148 clone CR99-24-38 prokMSA_id:020907 AF429151 clone CR99-24-41 prokMSA_id:046179 AF429152 clone CR99-24-42 prokMSA_id:042729 AF429154 clone CR99-24-44 prokMSA_id:018089 AF429162 clone CR99-24-52 prokMSA_id:048773 AF429166 clone CR99-24-56 prokMSA_id:016552 AF429169 clone CR99-24-59 prokMSA_id:045708 AF429185 clone CR99-24-75 prokMSA_id:076060 AF431535 actinobacterium clone N12.49WL prokMSA_id:074980 AF431537 actinobacterium clone C17.04WL prokMSA_id:075459 AF431538 actinobacterium clone C17.13WL prokMSA_id:075284 AF431539 actinobacterium clone C17.17WL prokMSA_id:077222 AF431540 actinobacterium clone C17.35WL prokMSA_id:077000 AF431546 actinobacterium clone S22.55WL prokMSA_id:076378 AF431548 actinobacterium clone C32.19SM prokMSA_id:061230 AF432670 clone NOS7.87WL prokMSA_id:061228 AF432674 clone NMS8.35WL prokMSA_id:061215 AF432686 clone SMS9.14WL prokMSA_id:061212 AF432690 clone SMS9.33WL prokMSA_id:076661 AF432772 clone C47.22PG prokMSA_id:075553 AF432820 clone C34.68SM prokMSA_id:046019 AF434947 sponge symbiont RSWS19 prokMSA_id:022807 AF434951 sponge symbiont RSWS22 prokMSA_id:025492 AF434952 sponge symbiont RSWS24 prokMSA_id:040321 AF434955 sponge symbiont RSWS27 prokMSA_id:035318 AF434984 sponge symbiont JAWS7 prokMSA_id:063826 AF454302 actinobacterium clone ML316M-14 prokMSA_id:063825 AF454304 actinobacterium clone ML516J-1 prokMSA_id:063823 AF454305 actinobacterium clone ML516J-8 prokMSA_id:063824 AF454306 actinobacterium clone ML602M-20 prokMSA_id:038205 AF469388 clone 33-PA59B99 prokMSA_id:067312 AF494496 firmicute clone GOBB3-B02-5-14 prokMSA_id:066423 AF497894 actinobacterium isolate WL5-17 prokMSA_id:067077 AF499389 clone JCL1-33 prokMSA_id:067048 AF499421 clone BL-28 prokMSA_id:067049 AF499422 clone BL-65 prokMSA_id:065823 AF507512 soil clone S0144 prokMSA_id:065748 AF507631 soil clone C1161 prokMSA_id:065747 AF507633 soil clone C1174 prokMSA_id:065723 AF507658 soil clone C164 prokMSA_id:065609 AF507793 soil clone S1238 prokMSA_id:074417 AH001580 TH3 and genes prokMSA_id:074599 AJ225339 High mol%G+C Gram positive species ; clone 65 prokMSA_id:049532 AJ232696 actinobacterium WB019 prokMSA_id:025905 AJ232697 actinobacterium WB020 prokMSA_id:034739 AJ232698 actinobacterium WB021 prokMSA_id:048327 AJ232699 actinobacterium WB022 prokMSA_id:026417 AJ232700 actinobacterium WB023 prokMSA_id:016895 AJ232702 actinobacterium WB025 prokMSA_id:018146 AJ232703 actinobacterium WB026 prokMSA_id:029735 AJ232704 actinobacterium WB027 prokMSA_id:018048 AJ232705 actinobacterium WB028 prokMSA_id:035251 AJ232706 actinobacterium WB029 prokMSA_id:026093 AJ232707 actinobacterium WB030 prokMSA_id:039448 AJ232709 actinobacterium WB032 prokMSA_id:042944 AJ232710 actinobacterium WB033 prokMSA_id:054750 AJ232711 actinobacterium WB034 prokMSA_id:027313 AJ232713 actinobacterium WB036 prokMSA_id:039396 AJ232714 actinobacterium WB037 prokMSA_id:021142 AJ232715 actinobacterium WB038 prokMSA_id:029349 AJ232716 actinobacterium WB039 prokMSA_id:028619 AJ232717 actinobacterium WB040 prokMSA_id:069010 AJ244329 Riz1030 prokMSA_id:073720 AJ289927 1204-20l prokMSA_id:090349 AJ315780 clone 1 prokMSA_id:089742 AJ315781 clone 2 prokMSA_id:088626 AJ315782 clone 3 prokMSA_id:090546 AJ315784 clone 5 prokMSA_id:060157 AJ347057 clone TK11 prokMSA_id:056105 AJ347058 clone TK21 prokMSA_id:060155 AJ347063 clone TK37 prokMSA_id:060149 AJ347067 clone TK49 prokMSA_id:061734 AJ416202 clone Sta2-06 prokMSA_id:074579 AJ421114 clone C11-K18 prokMSA_id:035546 AJ421197 clone C2-K15 prokMSA_id:016788 AJ421220 clone C5-K33 prokMSA_id:071006 AJ427638 actinobacterium clone ACT-A4 prokMSA_id:060082 AJ427686 actinomycete clone STM-A11 prokMSA_id:058348 AJ489412 clone NS-G54 prokMSA_id:062591 AJ504529 isolate P1CN69 prokMSA_id:062583 AJ504536 isolate P1CN78 prokMSA_id:062548 AJ504579 isolate P2CN30 prokMSA_id:062531 AJ504600 isolate P2CN60 prokMSA_id:062524 AJ504607 isolate P2CN70 prokMSA_id:076189 AJ517363 Ferromicrobium acidophilum DGGE band B8 prokMSA_id:076815 AJ517364 Ferromicrobium acidophilum DGGE band B14 prokMSA_id:057212 AJ518293 clone Mul2P3-63 prokMSA_id:057191 AJ518320 clone Neu2P1-42 prokMSA_id:057103 AJ518432 clone Neu4P3-37 prokMSA_id:056929 AJ518659 clone Sai2P2-4 prokMSA_id:056895 AJ518701 clone Sai4P1-87 prokMSA_id:093393 AJ582591 clone M50-05 prokMSA_id:026776 AY012520 Lake Michigan sediment LMBA2 prokMSA_id:044375 AY037589 soil clone S056 prokMSA_id:047746 AY038390 clone CD3D1 prokMSA_id:039508 AY038509 clone CD1G6 prokMSA_id:061496 AY043723 actinobacterium clone NOS7.160WL prokMSA_id:061386 AY043855 actinobacterium clone NMW3.112WL prokMSA_id:061370 AY043873 actinobacterium clone SMW4.129WL prokMSA_id:061360 AY043882 actinobacterium clone NMS8.124WL prokMSA_id:061363 AY043883 actinobacterium clone NMS8.127WL prokMSA_id:061351 AY043892 actinobacterium clone SMS9.115WL prokMSA_id:061342 AY043903 actinobacterium clone SMS9.55WL prokMSA_id:032980 AY046061 clone 3-4 1 prokMSA_id:042932 AY046062 clone 3-4 2 prokMSA_id:036702 AY046063 clone 3-4 4 prokMSA_id:036315 AY046065 clone 1-1 1 prokMSA_id:065451 AY102335 clone a13144 prokMSA_id:062323 AY124387 actinobacterium clone ASb01 prokMSA_id:062321 AY124389 actinobacterium clone ASb03 prokMSA_id:062320 AY124390 actinobacterium clone ASb04 prokMSA_id:062317 AY124391 actinobacterium clone ASb05 prokMSA_id:062313 AY124396 actinobacterium clone ASc01 prokMSA_id:056640 AY124402 actinobacterium clone CSb03 prokMSA_id:062311 AY124403 actinobacterium clone CSb04 prokMSA_id:062301 AY124414 actinobacterium clone SAa03 prokMSA_id:062300 AY124415 actinobacterium clone SAa04 prokMSA_id:062299 AY124416 actinobacterium clone SAa05 prokMSA_id:055584 AY124419 actinobacterium clone SAb01 prokMSA_id:062296 AY124420 actinobacterium clone SAb04 prokMSA_id:062294 AY124421 actinobacterium clone SAb08 prokMSA_id:056055 AY124422 actinobacterium clone SAb10 prokMSA_id:062293 AY124424 actinobacterium clone SAb12 prokMSA_id:062292 AY124426 actinobacterium clone SAc09 prokMSA_id:062285 AY124431 actinobacterium clone SDa05 prokMSA_id:062283 AY124435 actinobacterium clone SDb03 prokMSA_id:062282 AY124436 actinobacterium clone SDb04 prokMSA_id:062280 AY124438 actinobacterium clone SDb10 prokMSA_id:062279 AY124439 actinobacterium clone SDb11 prokMSA_id:062277 AY124441 actinobacterium clone SDc01 prokMSA_id:062274 AY124444 actinobacterium clone SDc05 prokMSA_id:062272 AY124447 actinobacterium clone SDc10 prokMSA_id:062270 AY124449 actinobacterium clone SDd03 prokMSA_id:062269 AY124450 actinobacterium clone SDd04 prokMSA_id:062268 AY124451 actinobacterium clone SDd05 prokMSA_id:062267 AY124452 actinobacterium clone SDd07 prokMSA_id:062266 AY124453 actinobacterium clone SDd08 prokMSA_id:062265 AY124454 actinobacterium clone SDd11 prokMSA_id:062264 AY124455 actinobacterium clone SDe01 prokMSA_id:062259 AY124458 actinobacterium clone SDe10 prokMSA_id:062258 AY124459 actinobacterium clone SDe11 prokMSA_id:069584 AY143733 actinobacterium clone V20 prokMSA_id:069693 AY143786 soil clone Vr19 prokMSA_id:069599 AY143791 actinobacterium clone Vr15 prokMSA_id:074118 AY145616 actinobacterium clone DC11-51-1 prokMSA_id:075013 AY157104 Gram-positive isolate WB-17 prokMSA_id:075094 AY157115 Gram-positive isolate HS-10 prokMSA_id:075930 AY157119 Gram-positive isolate HS-11 prokMSA_id:080263 AY191899 Acidimicrobium sp. clone BG39 prokMSA_id:079722 AY192284 actinobacterium clone W1-4C prokMSA_id:085028 AY214618 actinobacterium clone SL2-1-F5 prokMSA_id:083283 AY242631 soil clone Tc134-114 prokMSA_id:084662 AY242632 soil clone Tc122-F08 prokMSA_id:091544 AY258599 DGGE Band 1 prokMSA_id:087110 AY283147 actinobacterium clone NS-57 prokMSA_id:011423 D26244 soil from paddy field clone PAD57. prokMSA_id:011391 M79433 str. TH3. prokMSA_id:072326 M79434 TH3 prokMSA_id:011422 X78631 clone SMK140. prokMSA_id:011420 X84548 unnamed organism. prokMSA_id:011392 Z77517 str. 2-400 C2.16. 2.30.1.7 FRANKIA_GROUP 593 seqs 2.30.1.7.1 GDP.OBSCURUS_ASSEMBLAGE 112 seqs 2.30.1.7.1.001 OTU 2 seqs prokMSA_id:011447 D50066 Microsphaera multipartita str. Y-104 JCM 9543 . prokMSA_id:011448 Y08541 Microsphaera multipartita str. Y-104 JCM 9543 . 2.30.1.7.1.002 OTU 7 seqs prokMSA_id:011443 AB006166 Cryptosporangium sp. str. YU 656-31. prokMSA_id:011445 AB006168 Cryptosporangium sp. str. YU 655-31. prokMSA_id:020090 AB037007 Actinoplanes minutisporangius prokMSA_id:037020 AB047490 Actinoplanes aurantiacus prokMSA_id:039565 AB048220 Actinoplanes minutisporangius prokMSA_id:032913 AJ293746 Actinoplanes aurantiacus strain IMSNU 22120 prokMSA_id:011442 D85465 Cryptosporangium arvum str. YU 629-21 IFO 15965 . 2.30.1.7.1.003 OTU 1 seq prokMSA_id:011444 D85466 Cryptosporangium japonicum str. YU 636-3 IFO 15966 . 2.30.1.7.1.006 OTU 3 seqs prokMSA_id:011439 L40621 Geodermatophilus obscurus subsp. dictyosporus str. G97. prokMSA_id:011440 X92355 Geodermatophilus obscurus subsp. dictyosporus DSM 43161. prokMSA_id:011441 X92359 Geodermatophilus obscurus str. G16 dolomite marble Namibia. 2.30.1.7.1.007 OTU 1 seq prokMSA_id:011438 X92366 str. G6 white marble Athens Greece. 2.30.1.7.1.009 OTU 3 seqs prokMSA_id:011434 X92361 str. 4S limestone Negev desert Israel. prokMSA_id:011433 X92362 str. 33S limestone Negev desert Israel. prokMSA_id:011436 X92363 str. B-SWPS rock varnish Mojave desert USA. 2.30.1.7.1.010 OTU 1 seq prokMSA_id:011435 X92360 str. A7S basalt outcrop Sonora desert USA. 2.30.1.7.1.012 OTU 4 seqs prokMSA_id:011429 L40620 Geodermatophilus obscurus subsp. obscurus ATCC 25078 . prokMSA_id:011428 X92356 Geodermatophilus obscurus subsp. obscurus DSM 43160 . prokMSA_id:011432 X92357 Geodermatophilus obscurus subsp. utahensis DSM 43162. prokMSA_id:011437 X92358 str. G18 dolomite marble Namibia. 2.30.1.7.1.013 OTU 1 seq prokMSA_id:011431 AB021325 str. rJ7. 2.30.1.7.1.015 OTU 1 seq prokMSA_id:011426 X92710 clone TM262. 2.30.1.7.1.016 OTU 1 seq prokMSA_id:017785 AF316680 Crater Lake CL0-29 2.30.1.7.1.019 OTU 1 seq prokMSA_id:069307 AY145533 Actinomycetales GP-5 2.30.1.7.1.021 OTU 19 seqs prokMSA_id:090721 AF443580 clone C-F-4 prokMSA_id:030713 AJ296063 Geodermatophilus sp. BC509 prokMSA_id:049207 AJ296064 Geodermatophilus sp. BC518 prokMSA_id:046074 AJ316570 Blastococcus sp. BC512 prokMSA_id:018910 AJ316571 Blastococcus sp. BC448 prokMSA_id:043433 AJ316572 Blastococcus sp. BC517 prokMSA_id:074541 AJ316573 Blastococcus sp. BC521 prokMSA_id:022938 AJ316574 Blastococcus sp. BC412 prokMSA_id:040121 AJ430193 Blastococcus aggregatus strain DSM 4725T prokMSA_id:077869 AJ535735 Blastococcus sp. clone CF2 prokMSA_id:078282 AJ535746 Blastococcus sp. clone OF7 prokMSA_id:082581 AJ555200 Actinobacteridae clone ACF12 prokMSA_id:082910 AJ555202 Actinobacteridae clone ACF22 prokMSA_id:085809 AJ555209 Actinobacteridae clone ACF44 prokMSA_id:084641 AJ555210 Actinobacteridae clone ACF45 prokMSA_id:083197 AJ555216 actinomycete clone AOF3 prokMSA_id:011425 L40614 Blastococcus aggregatus ATCC 25902 . prokMSA_id:011427 X92364 str. G1S leachate of a landfill Vancouver Canada. prokMSA_id:049583 Y18646 Modestobacter multiseptatus 2.30.1.7.1.022 OTU 1 seq prokMSA_id:051600 AF131367 Geodermatophilus sp. IM-1092 2.30.1.7.1.023 OTU 1 seq prokMSA_id:071919 AJ277697 ARFS-30 2.30.1.7.1.024 OTU 1 seq prokMSA_id:071987 AY145534 Actinobacterium GP-6 2.30.1.7.1.025 OTU 1 seq prokMSA_id:073670 AJ277689 ARFS-5 2.30.1.7.1.026 OTU 1 seq prokMSA_id:083481 AY250860 actinobacterium clone BPU241 2.30.1.7.1.027 OTU 1 seq prokMSA_id:084631 AY250897 actinobacterium clone TLT170 2.30.1.7.1.028 OTU 1 seq prokMSA_id:085485 AY242624 soil clone Tc127-87 2.30.1.7.1.029 OTU 1 seq prokMSA_id:085878 AJ555208 Actinobacteridae clone ACF43 2.30.1.7.1.030 OTU 1 seq prokMSA_id:086044 AJ555224 actinomycete clone AOF24 2.30.1.7.1.031 OTU 1 seq prokMSA_id:086112 AJ555211 Actinobacteridae clone ACF47 2.30.1.7.1.032 OTU 1 seq prokMSA_id:091122 AY344424 clone L5-65 2.30.1.7.1.033 OTU 1 seq prokMSA_id:091911 AY344425 clone L7-44 2.30.1.7.1.034 OTU 1 seq prokMSA_id:097256 AJ575553 actinobacterium clone SW9 2.30.1.7.1.999 poor quality 54 seqs prokMSA_id:097168 AB124202 Cryptosporangium sp. 331G02 prokMSA_id:098849 AB124370 Blastococcus sp. 337G01 prokMSA_id:018244 AF078199 Grassland soil clone saf1_203 prokMSA_id:070910 AF078232 Grassland soil clone saf2_117 prokMSA_id:053271 AF234089 #0319-7E11 prokMSA_id:030203 AF256048 actinomycete GT37-2b prokMSA_id:052468 AF428934 clone CR98-35-52 prokMSA_id:072310 AF432248 Ellin424 prokMSA_id:061207 AF432694 clone SMS9.48WL prokMSA_id:057979 AF544268 actinobacterium isolate T40 prokMSA_id:057971 AF544281 actinobacterium isolate T35 prokMSA_id:057968 AF544282 actinobacterium isolate T33 prokMSA_id:057962 AF544288 actinobacterium isolate T21 prokMSA_id:057951 AF544304 actinobacterium isolate T54 prokMSA_id:055543 AF544363 actinobacterium isolate D52 prokMSA_id:017219 AJ296061 Geodermatophilus sp. BC444 prokMSA_id:049442 AJ296062 Geodermatophilus sp. BC525 prokMSA_id:052655 AJ296065 Geodermatophilus sp. BC503 prokMSA_id:020357 AJ296066 Geodermatophilus sp. BC496 prokMSA_id:052504 AJ296067 Geodermatophilus sp. BC620 prokMSA_id:035792 AJ296068 Geodermatophilus sp. BC499 prokMSA_id:020709 AJ296069 Geodermatophilus sp. BC512 prokMSA_id:031921 AJ296070 Geodermatophilus sp. BC448 prokMSA_id:051239 AJ296071 Geodermatophilus sp. BC521 prokMSA_id:029696 AJ296072 Geodermatophilus sp. BC517 prokMSA_id:024167 AJ296073 Geodermatophilus sp. BC617 prokMSA_id:043144 AJ296074 Geodermatophilus sp. BC506 prokMSA_id:023640 AJ296075 Geodermatophilus sp. BC460 prokMSA_id:018849 AJ296076 Geodermatophilus sp. BC412 prokMSA_id:044034 AJ296080 Geodermatophilus sp. BC513 prokMSA_id:029954 AJ298589 Hbr-K10 prokMSA_id:026581 AJ298831 Geodermatophilus obscurus strain BC503 prokMSA_id:024703 AJ298832 Modestobacter sp. BC496 strain BC496 prokMSA_id:041321 AJ298833 Modestobacter sp. BC507 strain BC507 prokMSA_id:039112 AJ298834 Modestobacter sp. BC545 strain BC545 prokMSA_id:035035 AJ298835 Blastococcus sp. BC519 strain BC519 prokMSA_id:048961 AJ298836 Blastococcus sp. BC502 strain BC502 prokMSA_id:043593 AJ298929 Geodermatophilus sp. d36 strain d36 prokMSA_id:045319 AJ400576 clone G4-K8 prokMSA_id:061720 AJ416220 clone Sta3-07 prokMSA_id:016792 AJ421113 clone C11-K10 prokMSA_id:062540 AJ504588 isolate P2CN41 prokMSA_id:055888 AJ518460 clone Neu4P3-77 prokMSA_id:095308 AJ583812 actinobacterium clone DGGE band 27 prokMSA_id:062318 AY124393 actinobacterium clone ASb07 prokMSA_id:062302 AY124413 actinobacterium clone CSd09 prokMSA_id:079113 AY186806 clone unel17 prokMSA_id:079294 AY186871 clone uvel26 prokMSA_id:093727 AY357964 actinobacterium cEV21 prokMSA_id:095569 AY395145 clone D29ST prokMSA_id:095813 AY395151 clone D36ST prokMSA_id:011446 D26193 soil from paddy field clone PAD6. prokMSA_id:011424 S70135 Frankia sp. str. AnpUS4. prokMSA_id:011430 Z73374 clone Ep_T1.48. 2.30.1.7.2 SCH.POLYMORPHA_SUBGROUP 44 seqs 2.30.1.7.2.001 OTU 4 seqs prokMSA_id:025897 AB006163 actinomycete isolate YU 736-21 prokMSA_id:073031 AB006164 Sporichthya brevicatena prokMSA_id:011451 AB025317 Sporichthya polymorpha IFO 12702. prokMSA_id:011449 X72377 Sporichthya polymorpha DSM 46113. 2.30.1.7.2.002 OTU 1 seq prokMSA_id:011450 AB021332 str. rJ14. 2.30.1.7.2.003 OTU 2 seqs prokMSA_id:030680 AF418967 clone HT2E3 prokMSA_id:084436 AF534431 actinobacterium clone TLM07/TLMdgge34 2.30.1.7.2.004 OTU 3 seqs prokMSA_id:049659 AF316665 Crater Lake CL500-95 prokMSA_id:030865 AJ007655 clone 1405-72 prokMSA_id:095914 AJ575542 actinobacterium clone W3 2.30.1.7.2.005 OTU 2 seqs prokMSA_id:032457 AJ277694 ARFS-21 prokMSA_id:034574 AJ277695 ARFS-24 2.30.1.7.2.006 OTU 1 seq prokMSA_id:034253 AJ222835 sp. clone 1404-31 2.30.1.7.2.007 OTU 1 seq prokMSA_id:037747 AJ244799 Gram-positive SOGA22 2.30.1.7.2.008 OTU 1 seq prokMSA_id:038121 AJ007644 clone 25/5-66 2.30.1.7.2.009 OTU 1 seq prokMSA_id:045664 AJ290054 FukuS81 2.30.1.7.2.010 OTU 1 seq prokMSA_id:070691 AJ007646 clone 404-57 2.30.1.7.2.011 OTU 1 seq prokMSA_id:083082 AY250865 actinobacterium clone FBP218 2.30.1.7.2.012 OTU 1 seq prokMSA_id:083120 AY250885 actinobacterium clone FBP468 2.30.1.7.2.013 OTU 1 seq prokMSA_id:083363 AY250849 actinobacterium clone BPS013 2.30.1.7.2.014 OTU 1 seq prokMSA_id:084785 AY250876 actinobacterium clone FBP304 2.30.1.7.2.015 OTU 1 seq prokMSA_id:086523 AY250882 actinobacterium clone FBP406 2.30.1.7.2.016 OTU 1 seq prokMSA_id:096214 AJ575554 actinobacterium clone SW10 2.30.1.7.2.017 OTU 1 seq prokMSA_id:096584 AJ575509 actinobacterium clone S8 2.30.1.7.2.018 OTU 1 seq prokMSA_id:097218 AJ575534 actinobacterium clone NM1 2.30.1.7.2.019 OTU 1 seq prokMSA_id:098193 AJ575536 actinobacterium clone NM3 2.30.1.7.2.999 poor quality 18 seqs prokMSA_id:050395 AB054908 Sporichthya sp. 1252 prokMSA_id:027299 AF078406 Grassland soil clone sl2_723 prokMSA_id:028810 AF428701 clone CRP99-47 prokMSA_id:066648 AF432249 Ellin425 prokMSA_id:058129 AF498690 Ellin308 prokMSA_id:058128 AF498691 Ellin309 prokMSA_id:034525 AJ404596 US16 prokMSA_id:057129 AJ518403 clone Neu4P2-3 prokMSA_id:055611 AJ518458 clone Neu4P3-73 prokMSA_id:061353 AY043894 actinobacterium clone SMS9.13WL prokMSA_id:061350 AY043897 actinobacterium clone SMS9.134WL prokMSA_id:065575 AY095385 yard-trimming-compost clone S-13 prokMSA_id:062325 AY124382 actinobacterium clone ASa04 prokMSA_id:069092 AY143734 Cellulomonas sp. clone V23 prokMSA_id:055648 AY143752 Sporichthya sp. clone Lur5 prokMSA_id:091021 AY330263 actinobacterium clone g99-H3 prokMSA_id:091731 AY330268 actinobacterium clone g99-H9 prokMSA_id:091519 AY330269 actinobacterium clone g99-H8 2.30.1.7.3 ACDT.CELLULOLYTICUS 1 seq 2.30.1.7.3.999 poor quality 1 seq prokMSA_id:011452 X70635 Acidothermus cellulolyticus str. 11B ATCC 43068 . 2.30.1.7.4 FRANKIA_SUBGROUP 436 seqs 2.30.1.7.4.004 OTU 1 seq prokMSA_id:011693 Z73371 clone Ep_T1.173. 2.30.1.7.4.007 OTU 6 seqs prokMSA_id:040609 AJ408869 Frankia sp. M16386 isolate M16386 prokMSA_id:011531 L18977 Frankia sp. str. Cn3 atypical. prokMSA_id:011684 L18978 Frankia sp. str. Dc2 atypical. prokMSA_id:011689 L18982 Frankia sp. str. Cn7 atypical. prokMSA_id:011537 U72717 Frankia Cea1.3 str. Cea1.3. prokMSA_id:011538 U72718 Frankia Cea5.1 str. Cea5.1. 2.30.1.7.4.008 OTU 1 seq prokMSA_id:011639 Z73372 clone Ep_T1.235. 2.30.1.7.4.009 OTU 1 seq prokMSA_id:011638 Z73370 clone Ep_T1.148. 2.30.1.7.4.010 OTU 1 seq prokMSA_id:011633 AJ232691 clone WB013. 2.30.1.7.4.011 OTU 1 seq prokMSA_id:011632 X92702 clone TM187. 2.30.1.7.4.012 OTU 1 seq prokMSA_id:011631 X92698 clone TM112. 2.30.1.7.4.014 OTU 51 seqs prokMSA_id:011495 AF034776 Frankia sp. prokMSA_id:024386 AF050758 Frankia sp. FrCam prokMSA_id:020753 AF050759 Frankia sp. FrCth prokMSA_id:011494 AF063639 Frankia sp. prokMSA_id:011535 AF063640 Frankia sp. prokMSA_id:011620 AF063641 Frankia sp. prokMSA_id:011630 AF063642 Frankia sp. prokMSA_id:011704 AF158687 Frankia FE12 str. FE12. prokMSA_id:018201 AJ408870 Frankia sp. M16467 isolate M16467 prokMSA_id:022175 AJ408871 Frankia sp. M16464 isolate M16464 prokMSA_id:052184 AJ408872 Frankia sp. MpI1 isolate MpI1 prokMSA_id:036926 AJ408874 Frankia sp. Sn4-3 isolate Sn4-3 prokMSA_id:042219 AJ408875 Frankia sp. Sn5-8 isolate Sn5-8 prokMSA_id:034093 AJ408876 Frankia sp. MRn2-2 isolate MRn2-2 prokMSA_id:094094 AJ549319 Frankia sp. BMG5.3 strain BMG5.3 prokMSA_id:093215 AJ549320 Frankia sp. BMG5.5 strain BMG5.5 prokMSA_id:093696 AJ549322 Frankia sp. BMG5.10 strain BMG5.10 prokMSA_id:093347 AJ549323 Frankia sp. BMG5.2 strain BMG5.2 prokMSA_id:094110 AJ549324 Frankia sp. BMG5.4 strain BMG5.4 prokMSA_id:093808 AJ549325 Frankia sp. BMG5.12 strain BMG5.12 prokMSA_id:093924 AJ549326 Frankia sp. BMG5.11 strain BMG5.11 prokMSA_id:011690 L18976 Frankia sp. str. AgKG'4/84. prokMSA_id:011685 L18979 Frankia sp. prokMSA_id:011714 L18981 Frankia sp. prokMSA_id:011548 L40610 Frankia sp. str. ACoN24d. prokMSA_id:011453 L40612 Frankia sp. str. ARgP5. prokMSA_id:011637 L40613 Frankia sp. str. AVN17s. prokMSA_id:011492 L40616 Frankia sp. str. Dryas. prokMSA_id:011534 L40617 Frankia sp. str. HR27-14. prokMSA_id:011503 L40618 Frankia sp. str. Ea1-28. prokMSA_id:011629 L40619 Frankia sp. str. SCN10a. prokMSA_id:011692 L40622 Frankia "myricanod". prokMSA_id:011594 L40956 Frankia sp. prokMSA_id:011540 M55343 Frankia sp. str. CeD ORS 020606. prokMSA_id:011598 M88466 Frankia sp. str. AcN14a. prokMSA_id:011624 U60284 Frankia sp. str. Darj16. prokMSA_id:011682 U60285 Frankia sp. str. Darj18. prokMSA_id:011625 U60286 Frankia sp. str. lawj13. prokMSA_id:011626 U60287 Frankia sp. str. Shil19. prokMSA_id:011493 U69265 Frankia sp. prokMSA_id:011677 Y12840 Frankia sp. str. AgBe3122. prokMSA_id:011678 Y12841 Frankia sp. str. AgBe3252. prokMSA_id:011706 Y12842 Frankia sp. str. AgBi26. prokMSA_id:011619 Y12843 Frankia sp. str. AgBi34. prokMSA_id:011707 Y12844 Frankia sp. str. AgBi40. prokMSA_id:011679 Y12845 Frankia sp. str. AgHe3210. prokMSA_id:011708 Y12846 Frankia sp. str. AgHi12. prokMSA_id:011709 Y12847 Frankia sp. str. AgHi30. prokMSA_id:011710 Y12848 Frankia sp. str. AgHi38. prokMSA_id:011711 Y12849 Frankia sp. str. AgZi42. prokMSA_id:011712 Y12850 Frankia sp. str. AgVD7i3. 2.30.1.7.4.015 OTU 1 seq prokMSA_id:011627 AJ007290 Acidothermus cellulolyticus str. 11B ATCC 43068 . 2.30.1.7.4.016 OTU 1 seq prokMSA_id:011622 L43598 str. Alnus rhizosphere soil amplicon. 2.30.1.7.4.017 OTU 2 seqs prokMSA_id:064049 AB087322 clone:CF51 prokMSA_id:011621 L43597 str. Alnus rhizosphere soil amplicon. 2.30.1.7.4.018 OTU 1 seq prokMSA_id:011618 AF142808 clone ACE-33. 2.30.1.7.4.019 OTU 2 seqs prokMSA_id:011591 AF027014 clone OPB41. prokMSA_id:011592 AF027016 clone OPS102. 2.30.1.7.4.020 OTU 2 seqs prokMSA_id:011593 AF186415 clone UC43f. prokMSA_id:028280 AF333519 actinobacterium clone R124 2.30.1.7.4.021 OTU 2 seqs prokMSA_id:011547 AF110142 clone SAR432. prokMSA_id:079512 AF382115 clone ZA3111c 2.30.1.7.4.022 OTU 2 seqs prokMSA_id:011546 U47132 Frankia sp. str. AgW1. prokMSA_id:011545 X95393 Frankia sp. str. AgW1. 2.30.1.7.4.023 OTU 1 seq prokMSA_id:011544 L40611 Frankia sp. str. AgB1-9. 2.30.1.7.4.024 OTU 1 seq prokMSA_id:011536 X92700 clone TM167. 2.30.1.7.4.025 OTU 1 seq prokMSA_id:011490 X53208 Frankia sp. str. Ag45/Mut15. 2.30.1.7.4.026 OTU 1 seq prokMSA_id:019440 AF333521 actinobacterium clone R18 2.30.1.7.4.027 OTU 1 seq prokMSA_id:026582 AF234143 #0319-7F3 2.30.1.7.4.028 OTU 1 seq prokMSA_id:027048 AF234072 #0319-6E4 2.30.1.7.4.029 OTU 1 seq prokMSA_id:069036 AF333520 actinobacterium clone R11 2.30.1.7.4.030 OTU 1 seq prokMSA_id:028271 AJ277701 ARFS-35 2.30.1.7.4.031 OTU 1 seq prokMSA_id:032487 AF424431 actinobacterium MERTZ_21CM_319 2.30.1.7.4.032 OTU 1 seq prokMSA_id:034356 AY053485 AT425_EubC5 2.30.1.7.4.033 OTU 3 seqs prokMSA_id:036404 AJ277691 ARFS-9 prokMSA_id:043222 AJ277693 ARFS-15 prokMSA_id:050077 AJ277700 ARFS-34 2.30.1.7.4.034 OTU 1 seq prokMSA_id:037339 AF286033 Saltmarsh clone LCP-68 2.30.1.7.4.035 OTU 1 seq prokMSA_id:041130 AJ408873 Frankia sp. MgI5 isolate MgI5 2.30.1.7.4.036 OTU 1 seq prokMSA_id:042261 AF234156 #0319-7L14 2.30.1.7.4.037 OTU 2 seqs prokMSA_id:044017 AB072735 Gemmimonas aurantiaca prokMSA_id:042760 AF255632 clone Ebpr21 2.30.1.7.4.038 OTU 2 seqs prokMSA_id:050024 AF234139 #0319-7E19 prokMSA_id:044411 AF234148 #0319-7G21 2.30.1.7.4.039 OTU 1 seq prokMSA_id:046349 AF424428 actinobacterium MERTZ_21CM_170 2.30.1.7.4.040 OTU 1 seq prokMSA_id:055634 AY095900 actinobacterium SH-102 2.30.1.7.4.041 OTU 1 seq prokMSA_id:048548 AF234118 #0425-2M17 2.30.1.7.4.042 OTU 1 seq prokMSA_id:055589 AY093463 clone MB-A2-108 2.30.1.7.4.043 OTU 1 seq prokMSA_id:073544 AF498729 Ellin347 2.30.1.7.4.044 OTU 1 seq prokMSA_id:051617 AF361216 actinomycete clone SUBT-5 2.30.1.7.4.045 OTU 1 seq prokMSA_id:072815 AB074931 actinobacterium clone:KB20 2.30.1.7.4.046 OTU 1 seq prokMSA_id:064014 AB087362 clone:F39 2.30.1.7.4.047 OTU 1 seq prokMSA_id:064923 AY095853 cyanobacterium pT-113 2.30.1.7.4.048 OTU 2 seqs prokMSA_id:065194 AY095564 firmicute WR-32 prokMSA_id:065085 AY095732 firmicute NL-125 2.30.1.7.4.049 OTU 1 seq prokMSA_id:065420 AF513101 clone 7 2.30.1.7.4.050 OTU 1 seq prokMSA_id:070048 AF498688 Ellin306 2.30.1.7.4.051 OTU 1 seq prokMSA_id:074263 AJ277698 ARFS-32 2.30.1.7.4.052 OTU 1 seq prokMSA_id:075241 AJ519401 actinobacterium clone JG37-AG-115 2.30.1.7.4.053 OTU 1 seq prokMSA_id:075656 AJ532700 clone Gitt-KF-183 2.30.1.7.4.054 OTU 1 seq prokMSA_id:076142 AJ534679 actinobacterium clone S15A-MN29 2.30.1.7.4.055 OTU 1 seq prokMSA_id:076217 AY154508 earthworm intestine clone ew31 2.30.1.7.4.056 OTU 1 seq prokMSA_id:076386 AY150886 Acidimicrobidae clone glen99_24 2.30.1.7.4.057 OTU 1 seq prokMSA_id:076768 AY150912 actinobacterium clone WYO13C 2.30.1.7.4.058 OTU 1 seq prokMSA_id:076800 AJ532728 clone JG34-KF-418 2.30.1.7.4.059 OTU 2 seqs prokMSA_id:080602 AJ538048 actinobacterium clone CF44 prokMSA_id:083329 AJ555205 Actinobacteridae clone ACF37 2.30.1.7.4.060 OTU 1 seq prokMSA_id:083514 AY250883 actinobacterium clone FBP417 2.30.1.7.4.061 OTU 1 seq prokMSA_id:085805 AY250884 actinobacterium clone FBP460 2.30.1.7.4.062 OTU 1 seq prokMSA_id:086105 AJ555231 actinomycete clone AOF47 2.30.1.7.4.063 OTU 1 seq prokMSA_id:088636 AF432636 clone N14.40WL 2.30.1.7.4.064 OTU 1 seq prokMSA_id:090194 AY289480 soil clone ABS-650 2.30.1.7.4.065 OTU 1 seq prokMSA_id:093039 AY354165 clone pIR3BC03 2.30.1.7.4.066 OTU 1 seq prokMSA_id:093368 AJ582059 actinobacterium clone KCM-C-117 2.30.1.7.4.067 OTU 1 seq prokMSA_id:093504 AJ582208 clone Gitt-GS-55 2.30.1.7.4.068 OTU 1 seq prokMSA_id:093508 AJ581611 clone KCM-B-19 2.30.1.7.4.069 OTU 1 seq prokMSA_id:093621 AJ549321 Frankia sp. BMG5.6 strain BMG5.6 2.30.1.7.4.070 OTU 1 seq prokMSA_id:093889 AJ582060 clone KCM-C-27 2.30.1.7.4.071 OTU 1 seq prokMSA_id:095507 AY381289 clone Lgja-42 2.30.1.7.4.072 OTU 1 seq prokMSA_id:098267 AY225656 actinobacterium clone AT-s3-3 2.30.1.7.4.999 poor quality 304 seqs prokMSA_id:047925 AB036500 KH1-2-12 prokMSA_id:032205 AB041322 ECS52 prokMSA_id:064030 AB087341 clone:F40 prokMSA_id:064025 AB087346 clone:F47 prokMSA_id:064022 AB087350 clone:F7 prokMSA_id:011539 AF027017 clone OPT96A. prokMSA_id:038220 AF063643 Frankia sp. symbiont in root nodule FE46 prokMSA_id:011518 AF063644 Frankia sp. prokMSA_id:011519 AF063645 Frankia sp. prokMSA_id:011520 AF064144 Frankia sp. prokMSA_id:011521 AF064145 Frankia sp. prokMSA_id:011522 AF064146 Frankia DtI2 str. DtI2. prokMSA_id:011523 AF064147 Frankia TqI15 str. TqI15. prokMSA_id:011524 AF064148 Frankia ChI5 str. ChI5. prokMSA_id:011525 AF064149 Frankia Ds12B str. Ds12B. prokMSA_id:011526 AF064150 Frankia ReI6 str. ReI6. prokMSA_id:011527 AF064151 Frankia TtI1 str. TtI1. prokMSA_id:011601 AF116075 Frankia sp. prokMSA_id:011640 AF116076 Frankia sp. prokMSA_id:011641 AF116077 Frankia sp. prokMSA_id:011554 AF116078 Frankia sp. prokMSA_id:011555 AF116079 Frankia sp. prokMSA_id:011556 AF116080 Frankia sp. prokMSA_id:011557 AF116081 Frankia sp. prokMSA_id:011558 AF116082 Frankia sp. prokMSA_id:011559 AF116083 Frankia sp. prokMSA_id:011560 AF116084 Frankia sp. prokMSA_id:011561 AF116085 Frankia sp. prokMSA_id:011562 AF116086 Frankia sp. prokMSA_id:011563 AF116087 Frankia sp. prokMSA_id:011564 AF116088 Frankia sp. prokMSA_id:011565 AF116089 Frankia sp. prokMSA_id:011566 AF116090 Frankia sp. prokMSA_id:011567 AF116091 Frankia sp. prokMSA_id:011568 AF116092 Frankia sp. prokMSA_id:011569 AF116093 Frankia sp. prokMSA_id:011602 AF116094 Frankia sp. prokMSA_id:011603 AF116095 Frankia sp. prokMSA_id:011604 AF116096 Frankia sp. prokMSA_id:011605 AF116097 Frankia sp. prokMSA_id:011606 AF116098 Frankia sp. prokMSA_id:011607 AF116099 Frankia sp. prokMSA_id:011694 AF116100 Frankia sp. prokMSA_id:011695 AF116101 Frankia sp. prokMSA_id:011696 AF116102 Frankia sp. prokMSA_id:011697 AF116103 Frankia sp. prokMSA_id:011698 AF116104 Frankia sp. prokMSA_id:011699 AF116105 Frankia sp. prokMSA_id:011700 AF116106 Frankia sp. prokMSA_id:011701 AF116107 Frankia sp. prokMSA_id:011702 AF116108 Frankia sp. prokMSA_id:011703 AF116109 Frankia sp. prokMSA_id:011471 AF116110 Frankia sp. prokMSA_id:011642 AF116111 Frankia sp. prokMSA_id:011643 AF116112 Frankia sp. prokMSA_id:011644 AF116113 Frankia sp. prokMSA_id:011645 AF116114 Frankia sp. prokMSA_id:011646 AF116115 Frankia sp. prokMSA_id:011647 AF116116 Frankia sp. prokMSA_id:011648 AF116117 Frankia sp. prokMSA_id:011649 AF116118 Frankia sp. prokMSA_id:011650 AF116119 Frankia sp. prokMSA_id:011651 AF116120 Frankia sp. prokMSA_id:011652 AF116121 Frankia sp. prokMSA_id:011653 AF116122 Frankia sp. prokMSA_id:011654 AF116123 Frankia sp. prokMSA_id:011655 AF116124 Frankia sp. prokMSA_id:011656 AF116125 Frankia sp. prokMSA_id:011657 AF116126 Frankia sp. prokMSA_id:011658 AF116127 Frankia sp. prokMSA_id:011659 AF116128 Frankia sp. prokMSA_id:011660 AF116129 Frankia sp. prokMSA_id:011661 AF116130 Frankia sp. prokMSA_id:011570 AF116131 Frankia sp. prokMSA_id:011571 AF116132 Frankia sp. prokMSA_id:011572 AF116133 Frankia sp. prokMSA_id:011573 AF116134 Frankia sp. prokMSA_id:011574 AF116135 Frankia sp. prokMSA_id:011575 AF116136 Frankia sp. prokMSA_id:011576 AF116137 Frankia sp. prokMSA_id:011577 AF116138 Frankia sp. prokMSA_id:011505 AF116139 Frankia sp. prokMSA_id:017834 AF116140 Frankia sp. FE61 prokMSA_id:037927 AF116141 Frankia sp. FE223 prokMSA_id:023381 AF116142 Frankia sp. FE62 prokMSA_id:030185 AF116143 Frankia sp. FE207 prokMSA_id:011506 AF116144 Frankia sp. prokMSA_id:030707 AF116145 Frankia sp. FE63b prokMSA_id:011578 AF116146 Frankia sp. prokMSA_id:011662 AF116147 Frankia sp. prokMSA_id:011663 AF116148 Frankia sp. prokMSA_id:011472 AF116149 Frankia sp. prokMSA_id:011473 AF116150 Frankia sp. prokMSA_id:011474 AF116151 Frankia sp. prokMSA_id:011475 AF116152 Frankia sp. prokMSA_id:011476 AF116153 Frankia sp. prokMSA_id:011664 AF116154 Frankia sp. prokMSA_id:011665 AF116155 Frankia sp. prokMSA_id:011666 AF116156 Frankia sp. prokMSA_id:011667 AF116157 Frankia sp. prokMSA_id:011668 AF116158 Frankia sp. prokMSA_id:011669 AF116159 Frankia sp. prokMSA_id:011670 AF116160 Frankia sp. prokMSA_id:011671 AF116161 Frankia sp. prokMSA_id:011507 AF116162 Frankia sp. prokMSA_id:011508 AF116163 Frankia sp. prokMSA_id:011509 AF116164 Frankia sp. prokMSA_id:011510 AF116165 Frankia sp. prokMSA_id:011511 AF116166 Frankia sp. prokMSA_id:011512 AF116167 Frankia sp. prokMSA_id:011513 AF116168 Frankia sp. prokMSA_id:011514 AF116169 Frankia sp. prokMSA_id:011515 AF116170 Frankia sp. prokMSA_id:011672 AF116171 Frankia sp. prokMSA_id:011673 AF116172 Frankia sp. prokMSA_id:011477 AF116173 Frankia sp. prokMSA_id:011478 AF116174 Frankia sp. prokMSA_id:011454 AF130789 Frankia sp. str. Ai11. prokMSA_id:011455 AF130790 Frankia sp. str. Ai21-2. prokMSA_id:011456 AF130791 Frankia sp. str. Ai22-2. prokMSA_id:011457 AF130792 Frankia sp. str. Ai24. prokMSA_id:011458 AF130793 Frankia sp. str. Ai43-2. prokMSA_id:011459 AF130794 Frankia sp. str. Ai2-2. prokMSA_id:011460 AF130795 Frankia sp. str. Ai13-3. prokMSA_id:011461 AF130796 Frankia sp. str. Ai14-2. prokMSA_id:011462 AF130797 Frankia sp. str. Ai38-1. prokMSA_id:011463 AF130798 Frankia sp. str. Ai40-2. prokMSA_id:011464 AF130799 Frankia sp. str. Ai42-2. prokMSA_id:011465 AF130800 Frankia sp. str. Ai45-1. prokMSA_id:011466 AF130801 Frankia sp. str. Ai45-3. prokMSA_id:011467 AF130802 Frankia sp. str. Ai46-1. prokMSA_id:011468 AF130803 Frankia sp. str. Ai48-1. prokMSA_id:011469 AF130804 Frankia sp. str. Ai48-2. prokMSA_id:011549 AF130805 Frankia sp. str. Ai21. prokMSA_id:011550 AF130806 Frankia sp. str. Ai23-2. prokMSA_id:011470 AF130807 Frankia sp. str. Ai57-2. prokMSA_id:011551 AF130808 Frankia sp. str. Ai58-2. prokMSA_id:011552 AF130809 Frankia sp. str. Ai20-4. prokMSA_id:011600 AF130810 Frankia sp. str. Ai17-1. prokMSA_id:011553 AF130811 Frankia sp. str. CpI1. prokMSA_id:011674 AF131893 Frankia sp. str. FE19. prokMSA_id:011579 AF131894 Frankia sp. str. FE22. prokMSA_id:011479 AF131895 Frankia sp. str. FE8a. prokMSA_id:011480 AF131896 Frankia sp. str. FE8b. prokMSA_id:011481 AF131897 Frankia sp. str. FE9. prokMSA_id:011580 AF131898 Frankia sp. str. FE112. prokMSA_id:011581 AF131899 Frankia sp. str. FE113. prokMSA_id:011582 AF131900 Frankia sp. str. FE114. prokMSA_id:011583 AF131901 Frankia sp. str. FE119. prokMSA_id:011584 AF131902 Frankia sp. str. FE120. prokMSA_id:011585 AF131903 Frankia sp. str. FE121. prokMSA_id:011586 AF131904 Frankia sp. str. FE122. prokMSA_id:011587 AF131905 Frankia sp. str. FE123. prokMSA_id:011588 AF131906 Frankia sp. str. FE129. prokMSA_id:011589 AF131907 Frankia sp. str. FE124. prokMSA_id:011590 AF131908 Frankia sp. str. FE125. prokMSA_id:052198 AF131909 Frankia sp. strain FE127 prokMSA_id:041033 AF145850 Metal-contaminated soil clone K20-55 prokMSA_id:028416 AF145861 Metal-contaminated soil clone K20-71 prokMSA_id:011543 AF149268 Frankia HFPCCI3 str. HFPCcI3. prokMSA_id:045279 AF149269 Frankia sp. FE245 prokMSA_id:011498 AF149270 Frankia FE137 str. FE137. prokMSA_id:011499 AF149271 Frankia FE140 str. FE140. prokMSA_id:011500 AF149272 Frankia FE141 str. FE141. prokMSA_id:011501 AF149273 Frankia FE142 str. FE142. prokMSA_id:011502 AF149274 Frankia FE143 str. FE143. prokMSA_id:030316 AF149275 Frankia sp. FE138 prokMSA_id:051686 AF149276 Frankia sp. FE139 prokMSA_id:011482 AF158664 Frankia FE150 str. FE150. prokMSA_id:011483 AF158665 Frankia FE151 str. FE151. prokMSA_id:011484 AF158666 Frankia FE152 str. FE152. prokMSA_id:011485 AF158667 Frankia FE153 str. FE153. prokMSA_id:011486 AF158668 Frankia FE154 str. FE154. prokMSA_id:011516 AF158669 Frankia FE155 str. FE155. prokMSA_id:011487 AF158670 Frankia FE156 str. FE156. prokMSA_id:011488 AF158671 Frankia FE157 str. FE157. prokMSA_id:011489 AF158672 Frankia FE158 str. FE158. prokMSA_id:011517 AF158673 Frankia FE159 str. FE159. prokMSA_id:011608 AF158674 Frankia FE160 str. FE160. prokMSA_id:011609 AF158675 Frankia FE161 str. FE161. prokMSA_id:011610 AF158676 Frankia FE162 str. FE162. prokMSA_id:011611 AF158677 Frankia FE163 str. FE163. prokMSA_id:011612 AF158678 Frankia FE164 str. FE164. prokMSA_id:011613 AF158679 Frankia FE165 str. FE165. prokMSA_id:011614 AF158680 Frankia FE166 str. FE166. prokMSA_id:011615 AF158681 Frankia FE167 str. FE167. prokMSA_id:011616 AF158682 Frankia FE168 str. FE168. prokMSA_id:011617 AF158683 Frankia FE169 str. FE169. prokMSA_id:011675 AF158684 Frankia FE34 str. FE34. prokMSA_id:011676 AF158685 Frankia FE136 str. FE136. prokMSA_id:024951 AF158686 Frankia sp. FE31d prokMSA_id:068066 AF365681 clone BT60DS1BA3 prokMSA_id:067987 AF365776 clone BT60DS4BH9 prokMSA_id:020159 AF388317 clone Ac77 prokMSA_id:045104 AF428710 clone CRP99-56 prokMSA_id:019650 AF428909 clone CR98-35-27 prokMSA_id:017319 AF428913 clone CR98-35-31 prokMSA_id:043897 AF428953 clone CR98-35-71 prokMSA_id:047478 AF428982 clone CR99-35-24 prokMSA_id:025852 AF429011 clone CR99-35-53 prokMSA_id:036217 AF429018 clone CR99-35-60 prokMSA_id:027045 AF429156 clone CR99-24-46 prokMSA_id:076100 AF431544 actinobacterium clone S21.51WL prokMSA_id:070826 AF432245 Ellin420 prokMSA_id:070810 AF432258 Ellin438 prokMSA_id:061213 AF432688 clone SMS9.3WL prokMSA_id:061201 AF432696 clone SMS9.77WL prokMSA_id:077111 AF432717 clone C17.58WL prokMSA_id:037810 AF434970 sponge symbiont JAWS13 prokMSA_id:080172 AF448184 actinobacterium clone ML110J-31 prokMSA_id:080603 AF448187 actinobacterium clone ML513M-9 prokMSA_id:080581 AF448188 actinobacterium clone ML516J-11 prokMSA_id:079851 AF448190 actinobacterium clone ML516J-5 prokMSA_id:028675 AF473993 firmicute 68-91 prokMSA_id:058148 AF544063 actinobacterium DGGE gel band H11-8 prokMSA_id:057974 AF544274 actinobacterium isolate T50 prokMSA_id:057970 AF544279 actinobacterium isolate T09 prokMSA_id:057963 AF544290 actinobacterium isolate T15 prokMSA_id:057938 AF544324 actinobacterium isolate M35 prokMSA_id:024532 AJ232712 actinobacterium WB035 prokMSA_id:023607 AJ233560 clone WR160 prokMSA_id:044478 AJ247094 Bulk8 prokMSA_id:030429 AJ344200 isolate BUG-161 prokMSA_id:047650 AJ400553 clone Hb6-K8 prokMSA_id:036137 AJ400573 clone G4-K30 prokMSA_id:053868 AJ404866 Frankia sp. AnpHR 23S and internal transcribed spacer 1 ITS1 prokMSA_id:052985 AJ404867 Frankia sp. AnpNHR 23S and internal transcribed spacer 1 ITS1 prokMSA_id:053854 AJ404868 Frankia sp. AnpOR 23S and internal transcribed spacer 1 ITS1 prokMSA_id:053972 AJ404869 Frankia sp. AnpUSR 23S and internal transcribed spacer 1 ITS1 prokMSA_id:054068 AJ404870 Frankia sp. AntKR 23S and internal transcribed spacer 1 ITS1 prokMSA_id:054626 AJ404871 Frankia sp. AgTR 23S and internal transcribed spacer 1 ITS1 prokMSA_id:071290 AJ416175 clone Urk0-40 prokMSA_id:060123 AJ427641 actinomycete clone ACT-A7 prokMSA_id:060112 AJ427654 actinomycete clone ACT-C4 prokMSA_id:040514 AJ431311 firmicute clone 2_16 prokMSA_id:058352 AJ489406 clone NS-X16 prokMSA_id:062547 AJ504580 isolate P2CN31 prokMSA_id:062542 AJ504587 isolate P2CN40 prokMSA_id:062541 AJ504589 isolate P2CN42 prokMSA_id:070242 AJ504596 isolate P2CN55 prokMSA_id:062517 AJ504615 isolate P2CN78 prokMSA_id:056379 AJ507789 clone BUG-161 prokMSA_id:056862 AJ518742 clone Sai4P3-68 prokMSA_id:093407 AJ582588 clone M50-01 prokMSA_id:033828 AY027645 Frankia sp. R2 prokMSA_id:038498 AY027646 Frankia sp. PtI6 prokMSA_id:016791 AY037752 earthworm cast clone C150 prokMSA_id:055426 AY043868 actinobacterium clone SMW4.106WL prokMSA_id:061365 AY043878 actinobacterium clone SMW4.61WL prokMSA_id:055576 AY043890 actinobacterium clone SMS9.108WL prokMSA_id:056534 AY043907 actinobacterium clone SMS9.78WL prokMSA_id:065187 AY095572 firmicute WR-42 prokMSA_id:065128 AY095680 firmicute OR-106 prokMSA_id:065107 AY095705 firmicute OR-217 prokMSA_id:065073 AY095744 firmicute NL-142R prokMSA_id:064999 AY095910 firmicute SH-215 prokMSA_id:065446 AY102340 clone a13154 prokMSA_id:062316 AY124394 actinobacterium clone ASb09 prokMSA_id:062298 AY124417 actinobacterium clone SAa06 prokMSA_id:062295 AY124425 actinobacterium clone SAc01 prokMSA_id:062288 AY124430 actinobacterium clone SDa04 prokMSA_id:062287 AY124433 actinobacterium clone SDa11 prokMSA_id:056453 AY124440 actinobacterium clone SDb12 prokMSA_id:062278 AY124443 actinobacterium clone SDc04 prokMSA_id:062275 AY124445 actinobacterium clone SDc06 prokMSA_id:062271 AY124448 actinobacterium clone SDd01 prokMSA_id:062261 AY124456 actinobacterium clone SDe05 prokMSA_id:062260 AY124457 actinobacterium clone SDe09 prokMSA_id:069648 AY143767 Frankia sp. clone Lur44 prokMSA_id:069134 AY143785 Frankia sp. clone Vr3 prokMSA_id:078846 AY177765 low G+C Gram-positive prokMSA_id:082754 AY242634 soil clone Tc120-141 prokMSA_id:086878 AY283144 clone NS-51 prokMSA_id:011491 L11307 Frankia sp. str. ArI4. prokMSA_id:011636 M74475 Frankia alni str. ArI3 HFP 013003. prokMSA_id:011634 M74476 Frankia sp. str. AVN17o ULF 014101715. prokMSA_id:011715 M74477 Frankia sp. str. ARgP5AG ULQ 0132105009. prokMSA_id:011596 M74478 Frankia sp. prokMSA_id:011532 M74479 Frankia sp. str. Ea1-12 ULF 130100112. prokMSA_id:011691 M74480 Frankia sp. str. Col ORS 060501. prokMSA_id:011628 M74481 Frankia sp. str. EUN1f ULQ 132500106. prokMSA_id:011597 M74482 Frankia sp. str. HRN18a ULF 140101801. prokMSA_id:011683 M74483 Frankia sp. str. CH ORS 140102. prokMSA_id:011688 M74484 Frankia sp. str. D11 ORS 020602. prokMSA_id:011635 M74485 Frankia sp. str. CeD. prokMSA_id:011533 M74486 Frankia sp. str. M2 ORS 020609. prokMSA_id:011687 M74487 Frankia sp. str. PtI1 DDB 17020110. prokMSA_id:011686 S70679 Frankia sp. prokMSA_id:011705 U35707 Frankia HFPCCI3 str. HFPCCI3. prokMSA_id:011496 U54608 Frankia sp. prokMSA_id:011530 U54609 Frankia sp. prokMSA_id:011595 U54610 Frankia sp. prokMSA_id:011497 U54611 Frankia sp. prokMSA_id:011623 U68285 Frankia sp. str. 32-85. prokMSA_id:011713 U68286 Frankia sp. str. Ahp1. prokMSA_id:011528 U82099 Frankia sp. prokMSA_id:027376 U82100 Frankia sp. prokMSA_id:011680 U82101 Frankia sp. prokMSA_id:011529 U82102 Frankia sp. prokMSA_id:011681 U82103 Frankia sp. prokMSA_id:011542 U82104 Frankia sp. prokMSA_id:011599 Z73373 clone Ep_T1.203. prokMSA_id:011541 Z73402 clone Ep_T1.248. prokMSA_id:011504 Z73406 clone Ep_T1.280. 2.30.1.8 STREPTOMYCES_SUBDIVISION 3287 seqs 2.30.1.8.1 STREPTOMYCES_AND_RELATIVES 2429 seqs 2.30.1.8.1.1 STM.ALBUS_SUBSPECIES_ALBUS 2 seqs 2.30.1.8.1.1.001 OTU 1 seq prokMSA_id:011716 X53163 Streptomyces albus subsp. albus DSM 40313 . 2.30.1.8.1.1.999 poor quality 1 seq prokMSA_id:097849 AY262295 Streptomyces sp. E5 2.30.1.8.1.2 STM.SCABIEI_SUBGROUP 869 seqs 2.30.1.8.1.2.016 OTU 1 seq prokMSA_id:011724 X53170 Streptomyces purpureus DSM 43460 . 2.30.1.8.1.2.021 OTU 1 seq prokMSA_id:070639 AF290616 Streptomyces roseoflavus 2.30.1.8.1.2.022 OTU 1 seq prokMSA_id:033286 AB030585 Streptomyces ushikuensis 2.30.1.8.1.2.023 OTU 1 seq prokMSA_id:037786 AF131585 Streptomyces sp. IM-7338 2.30.1.8.1.2.026 OTU 1 seq prokMSA_id:045520 AF356018 Actinobacterium NZ3 2.30.1.8.1.2.029 OTU 1 seq prokMSA_id:046555 AJ391817 Streptomyces sparsogenes strain NRRL 2940T 2.30.1.8.1.2.031 OTU 201 seqs prokMSA_id:039463 AB022873 Kitasatospora paracochleata prokMSA_id:053367 AB026199 Streptomyces scabies 23S complete and strain:ATCC 49173 prokMSA_id:054131 AB026200 Streptomyces scabies 23S complete and strain:SNS-26 prokMSA_id:054735 AB026201 Streptomyces scabies 23S complete and strain:ATCC 33282 prokMSA_id:054645 AB026202 Streptomyces scabies 23S complete and strain:8722 prokMSA_id:053324 AB026203 Streptomyces scabies 23S complete and strain:84232 prokMSA_id:054153 AB026204 Streptomyces scabies 23S complete and strain:RB2 prokMSA_id:054757 AB026205 Streptomyces scabies 23S complete and strain:R90-3 prokMSA_id:053328 AB026206 Streptomyces scabies 23S complete and strain:CEK-037 prokMSA_id:054201 AB026207 Streptomyces scabies 23S complete and strain:84174 prokMSA_id:053444 AB026208 Streptomyces scabies 23S complete and strain:84102 prokMSA_id:053692 AB026209 Streptomyces scabies 23S complete and strain:8779 prokMSA_id:054803 AB026210 Streptomyces scabies 23S complete and strain:LM5MT-2 prokMSA_id:054520 AB026211 Streptomyces scabies 23S complete and strain:LQH-4 prokMSA_id:054076 AB026212 Streptomyces scabies 23S complete and strain:8770 prokMSA_id:054425 AB026213 Streptomyces scabies 23S complete and strain:8776 prokMSA_id:054981 AB026214 Streptomyces scabies 23S complete and strain:DNK-G01 prokMSA_id:054792 AB026215 Streptomyces scabies 23S complete and strain:E-1 prokMSA_id:053580 AB026216 Streptomyces scabies 23S complete and strain:E-2 prokMSA_id:054184 AB026217 Streptomyces bottropensis 23S complete and strain:ATCC 25435 prokMSA_id:053091 AB026218 Streptomyces diastatochromogenes 23S complete and strain:ATCC 12309 prokMSA_id:053139 AB026219 Streptomyces neyagawaensis 23S complete and strain:ATCC 27449 prokMSA_id:054710 AB026220 Streptomyces acidiscabies 23S complete and strain:ATCC 49003 prokMSA_id:052924 AB026221 Streptomyces turgidiscabies 23S complete and strain:ATCC 700248 prokMSA_id:027887 AB045858 Streptomyces viridochromogenes prokMSA_id:043097 AB045860 Streptomyces panayensis prokMSA_id:052561 AB045863 Streptomyces jumonjinensis prokMSA_id:069713 AB045868 Streptomyces fimbriatus prokMSA_id:040019 AB045877 Streptomyces capoamus prokMSA_id:021602 AB045885 Streptomyces argillaceus prokMSA_id:078360 AB078897 Streptomyces avermitilis Streptomyces avermectinius prokMSA_id:077970 AB088069 Streptomyces sp. TP-A0274 prokMSA_id:011734 AF068055 Streptomyces Z2 str. Z2. prokMSA_id:011752 AF076309 Streptomyces EF-73. prokMSA_id:011753 AF101414 Streptomyces JL164 str. JL 164. prokMSA_id:047420 AF112154 Streptomyces sp. EF-35 prokMSA_id:037682 AF112156 Streptomyces sp. OB-2 prokMSA_id:026657 AF112159 Streptomyces sp. EF-52 prokMSA_id:034932 AF112166 Streptomyces sp. EF-4 prokMSA_id:020285 AF112167 Streptomyces sp. EF-79 prokMSA_id:051426 AF112180 Streptomyces mirabilis strain ATCC27447 prokMSA_id:028892 AF131500 Streptomyces sp. IM-0080 prokMSA_id:031543 AF131501 Streptomyces sp. IM-0086 prokMSA_id:052549 AF131504 Streptomyces sp. IM-1055 prokMSA_id:045854 AF131513 Streptomyces sp. IM-6784 prokMSA_id:045523 AF131514 Streptomyces sp. IM-6815 prokMSA_id:035816 AF131516 Streptomyces sp. IM-6826 prokMSA_id:036676 AF131517 Streptomyces sp. IM-6831 prokMSA_id:029587 AF131519 Streptomyces sp. IM-6862 prokMSA_id:020472 AF131520 Streptomyces sp. IM-6863 prokMSA_id:022961 AF131524 Streptomyces sp. IM-6869 prokMSA_id:017065 AF131525 Streptomyces sp. IM-6880 prokMSA_id:073150 AF131530 Streptomyces sp. IM-6926 prokMSA_id:046154 AF131531 Streptomyces sp. IM-6937 prokMSA_id:039433 AF131532 Streptomyces sp. IM-6950 prokMSA_id:024000 AF131533 Streptomyces sp. IM-6951 prokMSA_id:074796 AF131534 Streptomyces sp. IM-6956 prokMSA_id:017658 AF131540 Streptomyces sp. IM-6976 prokMSA_id:039799 AF131542 Streptomyces sp. IM-6985 prokMSA_id:027061 AF131543 Streptomyces sp. IM-6989 prokMSA_id:044777 AF131544 Streptomyces sp. IM-6991 prokMSA_id:024653 AF131547 Streptomyces sp. IM-7043 prokMSA_id:033743 AF131551 Streptomyces sp. IM-7112 prokMSA_id:048220 AF131555 Streptomyces sp. IM-7144 prokMSA_id:022884 AF131556 Streptomyces sp. IM-7145 prokMSA_id:031217 AF131557 Streptomyces sp. IM-7154 prokMSA_id:029236 AF131559 Streptomyces sp. IM-7166 prokMSA_id:043085 AF131560 Streptomyces sp. IM-7167 prokMSA_id:021554 AF131562 Streptomyces sp. IM-7170 prokMSA_id:025092 AF131564 Streptomyces sp. IM-7181 prokMSA_id:016773 AF131565 Streptomyces sp. IM-7182 prokMSA_id:039029 AF131566 Streptomyces sp. IM-7184 prokMSA_id:042292 AF131567 Streptomyces sp. IM-7185 prokMSA_id:048027 AF131568 Streptomyces sp. IM-7197 prokMSA_id:017292 AF131569 Streptomyces sp. IM-7201 prokMSA_id:037548 AF131572 Streptomyces sp. IM-7230 prokMSA_id:028042 AF131580 Streptomyces sp. IM-7259 prokMSA_id:027097 AF131584 Streptomyces sp. IM-7320 prokMSA_id:035532 AF131588 Streptomyces sp. IM-7353 prokMSA_id:022494 AF131590 Streptomyces sp. IM-7357 prokMSA_id:025567 AF131591 Streptomyces sp. IM-7362 prokMSA_id:018331 AF131592 Streptomyces sp. IM-7363 prokMSA_id:046185 AF131593 Streptomyces sp. IM-7368 prokMSA_id:054773 AF131596 Streptomyces sp. IM-7425 prokMSA_id:016419 AF131599 Streptomyces sp. IM-7474 prokMSA_id:045308 AF131600 Streptomyces sp. IM-7529 prokMSA_id:035469 AF131603 Streptomyces sp. IM-7580 prokMSA_id:043014 AF131605 Streptomyces sp. IM-8021 prokMSA_id:019132 AF131606 Streptomyces sp. IM-8053 prokMSA_id:023928 AF131607 Streptomyces sp. IM-8062 prokMSA_id:049539 AF131608 Streptomyces sp. IM-8072 prokMSA_id:027362 AF131609 Streptomyces sp. IM-8073 prokMSA_id:011735 AF145223 Streptomyces avermitilis str. NCIBM 12804T. prokMSA_id:047571 AF275257 Streptomyces sp. LS-1 prokMSA_id:071929 AF306639 Streptomyces sp. 11709 prokMSA_id:027954 AF331830 Streptomyces sp. R25 prokMSA_id:067682 AF346474 Streptomyces indigocolor strain NRRL B-12336 complete prokMSA_id:067683 AF346475 Streptomyces cyaneus strain NRRL B-2296 complete prokMSA_id:067680 AF346476 Streptomyces tumescens strain B-7-2 complete prokMSA_id:067679 AF346477 Streptomyces tumescens strain B-9-1 complete prokMSA_id:067678 AF346478 Streptomyces tumescens strain CO-2 complete prokMSA_id:067677 AF346479 Streptomyces tumescens strain CO-7 complete prokMSA_id:067676 AF346480 Streptomyces tumescens strain Cu-2-1 complete prokMSA_id:067675 AF346481 Streptomyces tumescens strain Cu-3-1 complete prokMSA_id:067674 AF346482 Streptomyces tumescens strain Km-1-1 complete prokMSA_id:056543 AF346483 Streptomyces tumescens strain Km-2-1 complete prokMSA_id:056592 AF346484 Streptomyces tumescens strain OTP-3-1 complete prokMSA_id:067673 AF346485 Streptomyces tumescens strain OTP-4-2 complete prokMSA_id:035613 AF361781 Streptomyces scabiei strain S33 prokMSA_id:026679 AF361782 Streptomyces turgidiscabies strain S27 prokMSA_id:026374 AF361783 Streptomyces acidiscabies strain S71 prokMSA_id:040357 AF361785 Streptomyces sp. S77 prokMSA_id:032361 AF361786 Streptomyces sp. S78 prokMSA_id:049929 AF385181 Streptomyces scabiei strain B-4 prokMSA_id:032477 AF385182 Streptomyces sp. DNK-G02 prokMSA_id:047730 AF385183 Streptomyces scabiei strain DNK-043 prokMSA_id:050088 AF385184 Streptomyces sp. DNK-G10 prokMSA_id:030608 AF385185 Streptomyces scabiei strain SBH-3 prokMSA_id:042671 AF385186 Streptomyces scabiei strain KD75173 prokMSA_id:049115 AF397892 Streptomyces bottropensis strain LE-2 prokMSA_id:030552 AF397893 Streptomyces bottropensis strain LE-3A prokMSA_id:051561 AF455813 Streptomyces padanus prokMSA_id:051904 AJ007401 Streptomyces somaliensis strain M29 prokMSA_id:011742 AJ007423 Streptomyces sp. str. CFBP4497. prokMSA_id:011743 AJ007424 Streptomyces sp. str. CFBP4509. prokMSA_id:011744 AJ007425 Streptomyces sp. str. CFBP4508. prokMSA_id:011745 AJ007426 Streptomyces sp. str. CFBP4498. prokMSA_id:011728 AJ007427 Streptomyces sp. str. CFBP4530. prokMSA_id:011738 AJ007429 Streptomyces sp. str. CFBP4521. prokMSA_id:026779 AJ276569 Streptomyces bicolor strain ISP 5140 prokMSA_id:041040 AJ278758 Streptomyces sp. strain 7 prokMSA_id:040540 AJ278759 Streptomyces sp. strain 65 prokMSA_id:045416 AJ278760 Streptomyces sp. strain 206 prokMSA_id:031047 AJ278761 Streptomyces sp. strain 346 prokMSA_id:050040 AJ308573 Streptomyces sp. Nu40 strain Nu40 prokMSA_id:024460 AJ310923 Streptomyces griseochromogenes strain DSM 40499 prokMSA_id:069890 AJ310924 Streptomyces peruviensis strain DSM 40592 prokMSA_id:030466 AJ310926 Streptomyces resistomycificus strain DSM 40133 prokMSA_id:050437 AJ310927 Streptomyces cyaneus strain DSM 40108 prokMSA_id:046425 AJ315072 Streptomyces sp. 19504 prokMSA_id:016715 AJ391813 Streptomyces sp. NRRL 2834 prokMSA_id:028121 AJ399464 Streptomyces indigocolor strain ISP 5432 prokMSA_id:052098 AJ399465 Streptomyces echinatus strain ISP 5013 prokMSA_id:031211 AJ399468 Streptomyces chartreusis strain ISP 5085 prokMSA_id:048040 AJ399469 Streptomyces lanatus strain ISP 5090 prokMSA_id:023390 AJ399471 Streptomyces cyaneus strain ISP 5107 prokMSA_id:025321 AJ399481 Streptomyces pseudovenezuelae strain ISP 5212 prokMSA_id:027863 AJ399487 Streptomyces cinnabarinus strain ISP 5467 prokMSA_id:048118 AJ399488 Streptomyces griseorubiginosus strain ISP 5469 prokMSA_id:048669 AJ399493 Streptomyces neyagawaensis strain ISP 5588 prokMSA_id:082111 AJ519792 Streptomyces sp. S-76 strain S-76 prokMSA_id:082087 AJ519793 Streptomyces sp. S-96 strain S-96 prokMSA_id:077075 AJ519938 Streptomyces sp. GE 90852 strain GE 90852 prokMSA_id:084140 AJ555230 actinomycete clone AOF42 prokMSA_id:083435 AP005031 Streptomyces avermitilis genomic complete genome section 11/30 prokMSA_id:083052 AP005037 Streptomyces avermitilis genomic complete genome section 17/30 prokMSA_id:083711 AP005040 Streptomyces avermitilis genomic complete genome section 20/30 prokMSA_id:082552 AP005041 Streptomyces avermitilis genomic complete genome section 21/30 prokMSA_id:082834 AP005046 Streptomyces avermitilis genomic complete genome section 26/30 prokMSA_id:084589 AP005048 Streptomyces avermitilis genomic complete genome section 28/30 prokMSA_id:026928 AY029696 Streptomyces sp. KN-0647 prokMSA_id:044433 AY037709 earthworm cast clone C059 prokMSA_id:051985 AY057090 Streptomyces scabiei subsp. chosun prokMSA_id:066698 AY094365 Streptomyces laceyi C762 prokMSA_id:066697 AY094366 Streptomyces laceyi c765 prokMSA_id:066696 AY094367 Streptomyces laceyi c7654 prokMSA_id:066694 AY094370 Streptomyces olivochromogenes DSM 40451 prokMSA_id:066692 AY094585 Streptomyces griseoruber prokMSA_id:060363 AY127079 Streptomyces sp. NRRL 30562 prokMSA_id:075542 AY148077 Streptomyces sp. EN3 prokMSA_id:075046 AY154478 Streptomyces sp. A3 prokMSA_id:082955 AY237556 Streptomyces sp. YIM 35551 prokMSA_id:082693 AY242623 soil clone Tc128-1 prokMSA_id:089015 AY295795 Streptomyces sp. 40013 prokMSA_id:091118 AY336563 Streptomyces sp. pfB34 prokMSA_id:091841 AY345419 K2-36A prokMSA_id:011736 D63862 Streptomyces scabiei ATCC 49173 . prokMSA_id:011741 D63863 Streptomyces scabiei ATCC 33282. prokMSA_id:011723 D63864 Streptomyces scabiei str. SNS-26. prokMSA_id:011739 D63865 Streptomyces acidiscabies ATCC 49003 . prokMSA_id:011726 D63866 Streptomyces sp. str. 91-Sy-13. prokMSA_id:011718 D63867 Streptomyces diastatochromogenes ATCC 12309 . prokMSA_id:011737 D63868 Streptomyces bottropensis ATCC 25435 . prokMSA_id:011719 D63869 Streptomyces neyagawaensis ATCC 27449 . prokMSA_id:011733 X79325 Streptomyces galbus DSM 40480. prokMSA_id:011754 X79852 Streptomyces galbus. prokMSA_id:011740 X79853 Streptomyces hygroscopicus. prokMSA_id:011720 X79854 Streptomyces lincolnensis. prokMSA_id:011721 X87312 str. SR 168. prokMSA_id:011755 X87320 str. SR 70. prokMSA_id:011727 Y10843 Streptomyces sp. str. C7655. prokMSA_id:011746 Y15493 Streptomyces scabies str. SSC101. prokMSA_id:011730 Y15495 Streptomyces sp. str. 287. prokMSA_id:011731 Y15496 Streptomyces sp. str. 298. prokMSA_id:011747 Y15497 Streptomyces scabies str. 364. prokMSA_id:011732 Y15499 Streptomyces sp. str. 300. prokMSA_id:011748 Y15500 Streptomyces scabies str. 267. prokMSA_id:011749 Y15506 Streptomyces scabies str. 380. prokMSA_id:011750 Y15508 Streptomyces scabies str. 302. prokMSA_id:011751 Y15509 Streptomyces scabies str. 289. prokMSA_id:011725 Z71365 Streptomyces seoulensis str. IMSNU-1 IMSNU 21266. 2.30.1.8.1.2.032 OTU 1 seq prokMSA_id:073610 AF131537 Streptomyces sp. IM-6964 2.30.1.8.1.2.033 OTU 1 seq prokMSA_id:091947 AY328956 Streptomyces sp. SM9-8 2.30.1.8.1.2.034 OTU 1 seq prokMSA_id:098153 AJ574924 Streptomyces sp. BC595 clone BC595 2.30.1.8.1.2.999 poor quality 659 seqs prokMSA_id:074509 AB054890 Streptomyces sp. 1095a prokMSA_id:074600 AB054891 Streptomyces sp. 1113b prokMSA_id:074707 AB054897 Streptomyces sp. 1038 prokMSA_id:041298 AB054916 Streptomyces sp. 1100 prokMSA_id:027399 AB054920 Streptomyces sp. 1022 prokMSA_id:027597 AB054922 Streptomyces sp. 1039 prokMSA_id:031342 AB054930 Streptomyces sp. 1737 prokMSA_id:035653 AB054932 Streptomyces sp. 1715 prokMSA_id:097302 AB122714 Streptomyces yerevanensis prokMSA_id:096678 AB122721 Streptomyces phaeofaciens prokMSA_id:096445 AB122729 Streptomyces phaeopurpureus prokMSA_id:095990 AB122730 Streptomyces phaeoviridis prokMSA_id:096940 AB122734 Streptomyces blastmyceticus prokMSA_id:095571 AB122755 Streptomyces hygroscopicus subsp. ossamyceticus prokMSA_id:097608 AB122763 Streptomyces griseoruber prokMSA_id:097337 AB122765 Streptomyces regensis prokMSA_id:096910 AB122779 Streptomyces cacaoi subsp. asoensis prokMSA_id:096622 AB122800 Streptomyces sp. 384B12 prokMSA_id:097652 AB122801 Streptomyces sp. 384C01 prokMSA_id:095316 AB122804 Streptomyces sp. 384C04 prokMSA_id:097645 AB122805 Streptomyces sp. 384C05 prokMSA_id:095966 AB122814 Streptomyces sp. 384D03 prokMSA_id:096481 AB122815 Streptomyces sp. 384D04 prokMSA_id:098443 AB122816 Streptomyces sp. 384D06 prokMSA_id:095224 AB122817 Streptomyces sp. 384D07 prokMSA_id:095291 AB122819 Streptomyces sp. 384D09 prokMSA_id:098147 AB122826 Streptomyces sp. 384E06 prokMSA_id:097819 AB122839 Streptomyces sp. 384F12 prokMSA_id:097460 AB122855 Streptomyces sp. 387A04 prokMSA_id:098220 AB122856 Streptomyces sp. 387A05 prokMSA_id:097850 AB122859 Streptomyces sp. 387A09 prokMSA_id:095303 AB122861 Streptomyces sp. 387A12 prokMSA_id:096519 AB122862 Streptomyces sp. 387B02 prokMSA_id:097427 AB122863 Streptomyces sp. 387B03 prokMSA_id:098577 AB122864 Streptomyces sp. 387B06 prokMSA_id:098145 AB122865 Streptomyces sp. 387B07 prokMSA_id:096619 AB122868 Streptomyces sp. 387C01 prokMSA_id:096456 AB122869 Streptomyces sp. 387C03 prokMSA_id:098408 AB122875 Streptomyces sp. 387D06 prokMSA_id:098161 AB122876 Streptomyces sp. 387D07 prokMSA_id:095280 AB122878 Streptomyces sp. 387D09 prokMSA_id:096068 AB122880 Streptomyces sp. 387D11 prokMSA_id:097764 AB122890 Streptomyces sp. 387F03 prokMSA_id:097450 AB122891 Streptomyces sp. 387F04 prokMSA_id:096879 AB122894 Streptomyces sp. 387F07 prokMSA_id:096242 AB122895 Streptomyces sp. 387F09 prokMSA_id:097355 AB122897 Streptomyces sp. 387F11 prokMSA_id:095351 AB122901 Streptomyces sp. 387G03 prokMSA_id:098129 AB122903 Streptomyces sp. 387G05 prokMSA_id:098626 AB122905 Streptomyces sp. 387G07 prokMSA_id:096594 AB122907 Streptomyces sp. 387G09 prokMSA_id:098139 AB122908 Streptomyces sp. 387G10 prokMSA_id:097675 AB122909 Streptomyces sp. 387G11 prokMSA_id:097919 AB122910 Streptomyces sp. 387G12 prokMSA_id:096278 AB122913 Streptomyces sp. 387H03 prokMSA_id:097520 AB122915 Streptomyces sp. 387H06 prokMSA_id:095702 AB122917 Streptomyces sp. 387H09 prokMSA_id:098799 AB122918 Streptomyces sp. 387H10 prokMSA_id:096541 AB122919 Streptomyces sp. 387H11 prokMSA_id:096805 AB122920 Streptomyces sp. 387H12 prokMSA_id:096439 AB122923 Streptomyces sp. 410A08 prokMSA_id:097916 AB122925 Streptomyces sp. 410A10 prokMSA_id:097189 AB122926 Streptomyces sp. 410A11 prokMSA_id:096903 AB122927 Streptomyces sp. 410A12 prokMSA_id:097112 AB122928 Streptomyces sp. 410B01 prokMSA_id:098441 AB122931 Streptomyces sp. 410B04 prokMSA_id:096683 AB122933 Streptomyces sp. 410B06 prokMSA_id:096668 AB122934 Streptomyces sp. 410B07 prokMSA_id:097756 AB122935 Streptomyces sp. 410B08 prokMSA_id:098625 AB122936 Streptomyces sp. 410B09 prokMSA_id:096130 AB122937 Streptomyces sp. 410B10 prokMSA_id:095392 AB122938 Streptomyces sp. 410B11 prokMSA_id:097588 AB122940 Streptomyces sp. 410C03 prokMSA_id:098487 AB122941 Streptomyces sp. 410C04 prokMSA_id:095997 AB122942 Streptomyces sp. 410C08 prokMSA_id:096080 AB122945 Streptomyces sp. 410C11 prokMSA_id:096950 AB122946 Streptomyces sp. 410D02 prokMSA_id:095943 AB122948 Streptomyces sp. 410D06 prokMSA_id:097530 AB122950 Streptomyces sp. 410D11 prokMSA_id:096654 AB122951 Streptomyces sp. 410E01 prokMSA_id:096860 AB122952 Streptomyces sp. 410E02 prokMSA_id:097684 AB122970 Streptomyces sp. 410G05 prokMSA_id:098611 AB122971 Streptomyces sp. 410G06 prokMSA_id:098699 AB122973 Streptomyces sp. 410G11 prokMSA_id:098025 AB122977 Streptomyces sp. 411A03 prokMSA_id:095513 AB122984 Streptomyces sp. 411B05 prokMSA_id:096002 AB122985 Streptomyces sp. 411B06 prokMSA_id:098279 AB122989 Streptomyces sp. 411C02 prokMSA_id:098429 AB122990 Streptomyces sp. 411C04 prokMSA_id:095228 AB122995 Streptomyces sp. 411C11 prokMSA_id:098531 AB122997 Streptomyces sp. 411D02 prokMSA_id:095382 AB122998 Streptomyces sp. 411D03 prokMSA_id:098150 AB123000 Streptomyces sp. 411D07 prokMSA_id:095464 AB123001 Streptomyces sp. 411D09 prokMSA_id:096792 AB123002 Streptomyces sp. 411D11 prokMSA_id:097843 AB123003 Streptomyces sp. 411D12 prokMSA_id:096689 AB123006 Streptomyces sp. 411E06 prokMSA_id:098049 AB123008 Streptomyces sp. 411E08 prokMSA_id:097409 AB123009 Streptomyces sp. 411E09 prokMSA_id:096282 AB123011 Streptomyces sp. 411E11 prokMSA_id:095367 AB123013 Streptomyces sp. 411F02 prokMSA_id:098375 AB123014 Streptomyces sp. 411F03 prokMSA_id:098212 AB123017 Streptomyces sp. 411F06 prokMSA_id:097486 AB123018 Streptomyces sp. 411F07 prokMSA_id:098376 AB123019 Streptomyces sp. 411F09 prokMSA_id:097551 AB123020 Streptomyces sp. 411F10 prokMSA_id:098340 AB123022 Streptomyces sp. 411F12 prokMSA_id:098248 AB123024 Streptomyces sp. 411G02 prokMSA_id:097247 AB123025 Streptomyces sp. 411G03 prokMSA_id:097042 AB123026 Streptomyces sp. 411G04 prokMSA_id:095250 AB123027 Streptomyces sp. 411G05 prokMSA_id:096097 AB123028 Streptomyces sp. 411G06 prokMSA_id:096128 AB123030 Streptomyces sp. 411G08 prokMSA_id:095856 AB123031 Streptomyces sp. 411G09 prokMSA_id:096632 AB123032 Streptomyces sp. 411G10 prokMSA_id:095814 AB123033 Streptomyces sp. 411G11 prokMSA_id:095829 AB123038 Streptomyces sp. 411H05 prokMSA_id:095212 AB123042 Streptomyces sp. 411H11 prokMSA_id:096070 AB123043 Streptomyces sp. 411H12 prokMSA_id:097644 AB123044 Streptomyces sp. 413A06 prokMSA_id:096816 AB123045 Streptomyces sp. 413A07 prokMSA_id:097232 AB123046 Streptomyces sp. 413A08 prokMSA_id:097230 AB123047 Streptomyces sp. 413A10 prokMSA_id:097907 AB123048 Streptomyces sp. 413A11 prokMSA_id:097364 AB123049 Streptomyces sp. 413B01 prokMSA_id:097749 AB123050 Streptomyces sp. 413B02 prokMSA_id:097864 AB123051 Streptomyces sp. 413B03 prokMSA_id:097793 AB123077 Streptomyces sp. 413F09 prokMSA_id:096151 AB123084 Streptomyces sp. 413G06 prokMSA_id:095283 AB123097 Streptomyces sp. 415A07 prokMSA_id:096660 AB123099 Streptomyces sp. 415A09 prokMSA_id:096138 AB123136 Streptomyces sp. 415E08 prokMSA_id:098130 AB123139 Streptomyces sp. 415E12 prokMSA_id:097195 AB123140 Streptomyces sp. 415F01 prokMSA_id:098586 AB123141 Streptomyces sp. 415F02 prokMSA_id:095952 AB123142 Streptomyces sp. 415F03 prokMSA_id:098034 AB123143 Streptomyces sp. 415F04 prokMSA_id:096091 AB123145 Streptomyces sp. 415F08 prokMSA_id:097817 AB123146 Streptomyces sp. 415F10 prokMSA_id:097922 AB123147 Streptomyces sp. 415F11 prokMSA_id:096379 AB123148 Streptomyces sp. 415F12 prokMSA_id:098547 AB123149 Streptomyces sp. 415G01 prokMSA_id:095792 AB123150 Streptomyces sp. 415G02 prokMSA_id:096573 AB123151 Streptomyces sp. 415G03 prokMSA_id:097924 AB123152 Streptomyces sp. 415G04 prokMSA_id:095902 AB123153 Streptomyces sp. 415G05 prokMSA_id:098057 AB123154 Streptomyces sp. 415G06 prokMSA_id:098277 AB123155 Streptomyces sp. 415G07 prokMSA_id:096947 AB123156 Streptomyces sp. 415G08 prokMSA_id:097524 AB123158 Streptomyces sp. 415G10 prokMSA_id:098121 AB123159 Streptomyces sp. 415G11 prokMSA_id:098349 AB123160 Streptomyces sp. 415G12 prokMSA_id:098507 AB123162 Streptomyces sp. 415H02 prokMSA_id:097054 AB123163 Streptomyces sp. 415H03 prokMSA_id:096939 AB123164 Streptomyces sp. 415H04 prokMSA_id:097071 AB123165 Streptomyces sp. 415H05 prokMSA_id:095718 AB123167 Streptomyces sp. 415H08 prokMSA_id:097219 AB123168 Streptomyces sp. 415H09 prokMSA_id:095775 AB123171 Streptomyces sp. 415H12 prokMSA_id:095550 AB123173 Streptomyces sp. 418A04 prokMSA_id:096304 AB123175 Streptomyces sp. 418A06 prokMSA_id:095613 AB123176 Streptomyces sp. 418A07 prokMSA_id:096378 AB123177 Streptomyces sp. 418A08 prokMSA_id:097635 AB123178 Streptomyces sp. 418A09 prokMSA_id:097357 AB123180 Streptomyces sp. 418A11 prokMSA_id:098578 AB123181 Streptomyces sp. 418B01 prokMSA_id:095200 AB123184 Streptomyces sp. 418B04 prokMSA_id:097441 AB123186 Streptomyces sp. 418B06 prokMSA_id:097767 AB123189 Streptomyces sp. 418B09 prokMSA_id:098399 AB123190 Streptomyces sp. 418B10 prokMSA_id:097396 AB123191 Streptomyces sp. 418B11 prokMSA_id:098591 AB123192 Streptomyces sp. 418B12 prokMSA_id:095521 AB123194 Streptomyces sp. 418C02 prokMSA_id:098583 AB123195 Streptomyces sp. 418C03 prokMSA_id:098294 AB123198 Streptomyces sp. 418C06 prokMSA_id:095773 AB123199 Streptomyces sp. 418C07 prokMSA_id:098397 AB123202 Streptomyces sp. 418C11 prokMSA_id:096424 AB123204 Streptomyces sp. 418D03 prokMSA_id:096911 AB123207 Streptomyces sp. 418D08 prokMSA_id:098236 AB123215 Streptomyces sp. 418E07 prokMSA_id:097573 AB123219 Streptomyces sp. 418F01 prokMSA_id:098809 AB123224 Streptomyces sp. 418F06 prokMSA_id:098335 AB123228 Streptomyces sp. 418F12 prokMSA_id:098386 AB123234 Streptomyces sp. 418G09 prokMSA_id:097606 AB123235 Streptomyces sp. 418G12 prokMSA_id:096591 AB123236 Streptomyces sp. 418H02 prokMSA_id:098830 AB123238 Streptomyces sp. 418H04 prokMSA_id:098404 AB123240 Streptomyces sp. 418H07 prokMSA_id:098393 AB123252 Streptomyces sp. 419B01 prokMSA_id:098478 AB123274 Streptomyces sp. 419D01 prokMSA_id:096136 AB123277 Streptomyces sp. 419D04 prokMSA_id:098238 AB123278 Streptomyces sp. 419D05 prokMSA_id:097593 AB123279 Streptomyces sp. 419D06 prokMSA_id:097221 AB123282 Streptomyces sp. 419D11 prokMSA_id:096838 AB123283 Streptomyces sp. 419D12 prokMSA_id:096589 AB123284 Streptomyces sp. 419E01 prokMSA_id:095207 AB123289 Streptomyces sp. 419E06 prokMSA_id:098028 AB123291 Streptomyces sp. 419E08 prokMSA_id:096395 AB123293 Streptomyces sp. 419E10 prokMSA_id:095230 AB123295 Streptomyces sp. 419E12 prokMSA_id:097620 AB123298 Streptomyces sp. 419F04 prokMSA_id:098754 AB123300 Streptomyces sp. 419F06 prokMSA_id:095296 AB123301 Streptomyces sp. 419F07 prokMSA_id:097521 AB123302 Streptomyces sp. 419F10 prokMSA_id:097541 AB123311 Streptomyces sp. 419G09 prokMSA_id:098488 AB123315 Streptomyces sp. 419H09 prokMSA_id:097737 AB123317 Streptomyces sp. 424A03 prokMSA_id:098368 AB123318 Streptomyces sp. 424A04 prokMSA_id:098777 AB123319 Streptomyces sp. 424A05 prokMSA_id:097548 AB123320 Streptomyces sp. 424A07 prokMSA_id:096897 AB123323 Streptomyces sp. 424B04 prokMSA_id:098217 AB123330 Streptomyces sp. 424C10 prokMSA_id:096105 AB123332 Streptomyces sp. 424D04 prokMSA_id:095323 AB123347 Streptomyces sp. 424F03 prokMSA_id:096671 AB123350 Streptomyces sp. 424F09 prokMSA_id:098708 AB123351 Streptomyces sp. 424F10 prokMSA_id:098717 AB123354 Streptomyces sp. 424G09 prokMSA_id:097643 AB123356 Streptomyces sp. 424G11 prokMSA_id:095271 AB123357 Streptomyces sp. 424G12 prokMSA_id:098614 AB123358 Streptomyces sp. 424H02 prokMSA_id:098540 AB123370 Streptomyces sp. 428A11 prokMSA_id:098728 AB123372 Streptomyces sp. 428B01 prokMSA_id:096954 AB123376 Streptomyces sp. 428B06 prokMSA_id:096877 AB123379 Streptomyces sp. 428B10 prokMSA_id:095196 AB123385 Streptomyces sp. 428C04 prokMSA_id:098402 AB123386 Streptomyces sp. 428C05 prokMSA_id:098685 AB123389 Streptomyces sp. 428C09 prokMSA_id:097810 AB123392 Streptomyces sp. 428D01 prokMSA_id:097149 AB123404 Streptomyces sp. 428E04 prokMSA_id:095970 AB123406 Streptomyces sp. 428E08 prokMSA_id:098833 AB123407 Streptomyces sp. 428E09 prokMSA_id:095410 AB123408 Streptomyces sp. 428E12 prokMSA_id:098357 AB123409 Streptomyces sp. 428F01 prokMSA_id:097478 AB123410 Streptomyces sp. 428F03 prokMSA_id:098381 AB123411 Streptomyces sp. 428F04 prokMSA_id:097574 AB123412 Streptomyces sp. 428F05 prokMSA_id:097984 AB123413 Streptomyces sp. 428F08 prokMSA_id:098769 AB123416 Streptomyces sp. 428F12 prokMSA_id:096261 AB123418 Streptomyces sp. 428G02 prokMSA_id:096290 AB123429 Streptomyces sp. 428H09 prokMSA_id:095298 AB123436 Streptomyces sp. 431A08 prokMSA_id:097417 AB123441 Streptomyces sp. 431B03 prokMSA_id:097686 AB123470 Streptomyces sp. 431E01 prokMSA_id:096964 AB123472 Streptomyces sp. 431E03 prokMSA_id:098874 AB123473 Streptomyces sp. 431E04 prokMSA_id:097175 AB123475 Streptomyces sp. 431E07 prokMSA_id:097171 AB123476 Streptomyces sp. 431E08 prokMSA_id:098521 AB123477 Streptomyces sp. 431E11 prokMSA_id:096418 AB123478 Streptomyces sp. 431F02 prokMSA_id:098218 AB123482 Streptomyces sp. 431F12 prokMSA_id:095833 AB123485 Streptomyces sp. 431G03 prokMSA_id:096299 AB123486 Streptomyces sp. 431G04 prokMSA_id:096211 AB123487 Streptomyces sp. 431G05 prokMSA_id:097885 AB123489 Streptomyces sp. 431G08 prokMSA_id:095772 AB123490 Streptomyces sp. 431G10 prokMSA_id:095749 AB123491 Streptomyces sp. 431G11 prokMSA_id:098817 AB123492 Streptomyces sp. 431G12 prokMSA_id:096031 AB123493 Streptomyces sp. 431H01 prokMSA_id:095838 AB123495 Streptomyces sp. 431H05 prokMSA_id:097522 AB123496 Streptomyces sp. 431H06 prokMSA_id:096569 AB123497 Streptomyces sp. 431H09 prokMSA_id:096485 AB123499 Streptomyces sp. 431H11 prokMSA_id:098445 AB123502 Streptomyces sp. 434A04 prokMSA_id:098348 AB123507 Streptomyces sp. 434A12 prokMSA_id:095594 AB123509 Streptomyces sp. 434B02 prokMSA_id:095751 AB123515 Streptomyces sp. 434B08 prokMSA_id:098796 AB123530 Streptomyces sp. 434D10 prokMSA_id:095567 AB123531 Streptomyces sp. 434D11 prokMSA_id:098421 AB123532 Streptomyces sp. 434D12 prokMSA_id:095472 AB123533 Streptomyces sp. 434E02 prokMSA_id:095501 AB123534 Streptomyces sp. 434E03 prokMSA_id:096292 AB123535 Streptomyces sp. 434E04 prokMSA_id:096672 AB123540 Streptomyces sp. 434E09 prokMSA_id:095237 AB123544 Streptomyces sp. 434F01 prokMSA_id:096765 AB123546 Streptomyces sp. 434F03 prokMSA_id:095729 AB123548 Streptomyces sp. 434F05 prokMSA_id:098144 AB123552 Streptomyces sp. 434G01 prokMSA_id:095488 AB123553 Streptomyces sp. 434G03 prokMSA_id:098719 AB123554 Streptomyces sp. 434G04 prokMSA_id:097581 AB123555 Streptomyces sp. 434G06 prokMSA_id:095306 AB123556 Streptomyces sp. 434G07 prokMSA_id:098475 AB123560 Streptomyces sp. 434G11 prokMSA_id:095205 AB123561 Streptomyces sp. 434G12 prokMSA_id:097795 AB123564 Streptomyces sp. 434H03 prokMSA_id:098304 AB123566 Streptomyces sp. 434H05 prokMSA_id:095557 AB123568 Streptomyces sp. 434H07 prokMSA_id:095520 AB123597 Streptomyces sp. 303C06 prokMSA_id:096827 AB123612 Streptomyces sp. 303D11 prokMSA_id:095939 AB123615 Streptomyces sp. 303E02 prokMSA_id:096659 AB123616 Streptomyces sp. 303E03 prokMSA_id:098835 AB123618 Streptomyces sp. 303E05 prokMSA_id:095740 AB123620 Streptomyces sp. 303E08 prokMSA_id:097649 AB123623 Streptomyces sp. 303E11 prokMSA_id:095468 AB123624 Streptomyces sp. 303E12 prokMSA_id:096274 AB123625 Streptomyces sp. 303F01 prokMSA_id:098825 AB123629 Streptomyces sp. 303F05 prokMSA_id:098738 AB123630 Streptomyces sp. 303F07 prokMSA_id:098101 AB123631 Streptomyces sp. 303F08 prokMSA_id:097656 AB123633 Streptomyces sp. 303F10 prokMSA_id:098313 AB123638 Streptomyces sp. 303G05 prokMSA_id:097811 AB123641 Streptomyces sp. 303G08 prokMSA_id:097246 AB123642 Streptomyces sp. 303G09 prokMSA_id:097264 AB123644 Streptomyces sp. 303G12 prokMSA_id:096598 AB123649 Streptomyces sp. 303H05 prokMSA_id:098501 AB123655 Streptomyces sp. 303H12 prokMSA_id:096166 AB123656 Streptomyces sp. 306A03 prokMSA_id:098167 AB123673 Streptomyces sp. 306B11 prokMSA_id:097992 AB123674 Streptomyces sp. 306B12 prokMSA_id:097485 AB123677 Streptomyces sp. 306C03 prokMSA_id:095963 AB123679 Streptomyces sp. 306C05 prokMSA_id:098289 AB123683 Streptomyces sp. 306C09 prokMSA_id:095779 AB123686 Streptomyces sp. 306D02 prokMSA_id:095413 AB123687 Streptomyces sp. 306D03 prokMSA_id:097887 AB123692 Streptomyces sp. 306D08 prokMSA_id:096527 AB123693 Streptomyces sp. 306D09 prokMSA_id:098160 AB123695 Streptomyces sp. 306D12 prokMSA_id:097831 AB123697 Streptomyces sp. 306E02 prokMSA_id:098589 AB123698 Streptomyces sp. 306E03 prokMSA_id:098023 AB123700 Streptomyces sp. 306E05 prokMSA_id:098840 AB123701 Streptomyces sp. 306E06 prokMSA_id:098341 AB123711 Streptomyces sp. 306F06 prokMSA_id:098001 AB123713 Streptomyces sp. 306F08 prokMSA_id:095653 AB123722 Streptomyces sp. 306G09 prokMSA_id:097284 AB123724 Streptomyces sp. 306G12 prokMSA_id:096823 AB123731 Streptomyces sp. 306H08 prokMSA_id:096574 AB123733 Streptomyces sp. 306H12 prokMSA_id:097670 AB123739 Streptomyces sp. 310A08 prokMSA_id:095238 AB123742 Streptomyces sp. 310A11 prokMSA_id:098411 AB123743 Streptomyces sp. 310A12 prokMSA_id:096156 AB123744 Streptomyces sp. 310B01 prokMSA_id:095639 AB123747 Streptomyces sp. 310B04 prokMSA_id:096435 AB123749 Streptomyces sp. 310B06 prokMSA_id:095802 AB123751 Streptomyces sp. 310B08 prokMSA_id:097084 AB123754 Streptomyces sp. 310B11 prokMSA_id:096675 AB123757 Streptomyces sp. 310C02 prokMSA_id:095293 AB123759 Streptomyces sp. 310C04 prokMSA_id:096060 AB123760 Streptomyces sp. 310C05 prokMSA_id:096257 AB123762 Streptomyces sp. 310C07 prokMSA_id:097208 AB123768 Streptomyces sp. 310D03 prokMSA_id:098494 AB123769 Streptomyces sp. 310D04 prokMSA_id:097174 AB123770 Streptomyces sp. 310D05 prokMSA_id:098759 AB123771 Streptomyces sp. 310D06 prokMSA_id:097902 AB123774 Streptomyces sp. 310D09 prokMSA_id:098241 AB123775 Streptomyces sp. 310D10 prokMSA_id:097249 AB123779 Streptomyces sp. 310E02 prokMSA_id:096799 AB123784 Streptomyces sp. 310E08 prokMSA_id:097025 AB123785 Streptomyces sp. 310E09 prokMSA_id:098575 AB123794 Streptomyces sp. 310F06 prokMSA_id:095615 AB123811 Streptomyces sp. 310G12 prokMSA_id:098528 AB123815 Streptomyces sp. 310H04 prokMSA_id:098781 AB123816 Streptomyces sp. 310H05 prokMSA_id:095491 AB123818 Streptomyces sp. 310H07 prokMSA_id:096125 AB123819 Streptomyces sp. 310H08 prokMSA_id:097110 AB123820 Streptomyces sp. 310H09 prokMSA_id:098650 AB123825 Streptomyces sp. 313A04 prokMSA_id:095309 AB123826 Streptomyces sp. 313A05 prokMSA_id:095385 AB123827 Streptomyces sp. 313A06 prokMSA_id:095508 AB123828 Streptomyces sp. 313A07 prokMSA_id:098126 AB123836 Streptomyces sp. 313B03 prokMSA_id:096842 AB123837 Streptomyces sp. 313B04 prokMSA_id:095810 AB123840 Streptomyces sp. 313B07 prokMSA_id:095394 AB123842 Streptomyces sp. 313B09 prokMSA_id:097598 AB123844 Streptomyces sp. 313B11 prokMSA_id:097188 AB123845 Streptomyces sp. 313B12 prokMSA_id:098143 AB123846 Streptomyces sp. 313C01 prokMSA_id:096183 AB123847 Streptomyces sp. 313C02 prokMSA_id:098847 AB123848 Streptomyces sp. 313C03 prokMSA_id:095179 AB123851 Streptomyces sp. 313C06 prokMSA_id:098502 AB123852 Streptomyces sp. 313C07 prokMSA_id:095915 AB123853 Streptomyces sp. 313C08 prokMSA_id:098154 AB123854 Streptomyces sp. 313C09 prokMSA_id:098170 AB123855 Streptomyces sp. 313C10 prokMSA_id:097128 AB123857 Streptomyces sp. 313D01 prokMSA_id:098480 AB123859 Streptomyces sp. 313D03 prokMSA_id:098866 AB123863 Streptomyces sp. 313D08 prokMSA_id:098609 AB123864 Streptomyces sp. 313D09 prokMSA_id:097899 AB123866 Streptomyces sp. 313D12 prokMSA_id:097750 AB123868 Streptomyces sp. 313E02 prokMSA_id:097224 AB123870 Streptomyces sp. 313E04 prokMSA_id:098081 AB123873 Streptomyces sp. 313E08 prokMSA_id:096872 AB123874 Streptomyces sp. 313E09 prokMSA_id:096881 AB123876 Streptomyces sp. 313E11 prokMSA_id:096344 AB123877 Streptomyces sp. 313F01 prokMSA_id:095715 AB123878 Streptomyces sp. 313F02 prokMSA_id:097625 AB123879 Streptomyces sp. 313F03 prokMSA_id:097104 AB123882 Streptomyces sp. 313F06 prokMSA_id:096033 AB123883 Streptomyces sp. 313F07 prokMSA_id:095365 AB123884 Streptomyces sp. 313F08 prokMSA_id:095325 AB123887 Streptomyces sp. 313F11 prokMSA_id:095233 AB123888 Streptomyces sp. 313F12 prokMSA_id:096786 AB123890 Streptomyces sp. 313G02 prokMSA_id:098758 AB123899 Streptomyces sp. 313G12 prokMSA_id:097678 AB123900 Streptomyces sp. 313H01 prokMSA_id:096962 AB123911 Streptomyces sp. 316A03 prokMSA_id:095289 AB123912 Streptomyces sp. 316A05 prokMSA_id:096039 AB123913 Streptomyces sp. 316A06 prokMSA_id:095975 AB123915 Streptomyces sp. 316A09 prokMSA_id:097067 AB123916 Streptomyces sp. 316A10 prokMSA_id:097431 AB123920 Streptomyces sp. 316B02 prokMSA_id:095954 AB123927 Streptomyces sp. 316B10 prokMSA_id:095282 AB123931 Streptomyces sp. 316C02 prokMSA_id:095561 AB123933 Streptomyces sp. 316C04 prokMSA_id:096979 AB123936 Streptomyces sp. 316C08 prokMSA_id:097205 AB123942 Streptomyces sp. 316D05 prokMSA_id:096605 AB123943 Streptomyces sp. 316D06 prokMSA_id:097412 AB123945 Streptomyces sp. 316D08 prokMSA_id:098244 AB123949 Streptomyces sp. 316D12 prokMSA_id:097967 AB123950 Streptomyces sp. 316E03 prokMSA_id:095218 AB123951 Streptomyces sp. 316E04 prokMSA_id:095272 AB123952 Streptomyces sp. 316E06 prokMSA_id:097936 AB123954 Streptomyces sp. 316E08 prokMSA_id:096565 AB123955 Streptomyces sp. 316E09 prokMSA_id:096370 AB123956 Streptomyces sp. 316E10 prokMSA_id:097362 AB123958 Streptomyces sp. 316E12 prokMSA_id:095627 AB123959 Streptomyces sp. 316F02 prokMSA_id:098801 AB123961 Streptomyces sp. 316F05 prokMSA_id:096244 AB123965 Streptomyces sp. 316F11 prokMSA_id:096725 AB123966 Streptomyces sp. 316F12 prokMSA_id:095842 AB123968 Streptomyces sp. 316G02 prokMSA_id:098425 AB123969 Streptomyces sp. 316G03 prokMSA_id:097536 AB123972 Streptomyces sp. 316G06 prokMSA_id:096192 AB123973 Streptomyces sp. 316G07 prokMSA_id:095216 AB123974 Streptomyces sp. 316G09 prokMSA_id:096667 AB123978 Streptomyces sp. 316H02 prokMSA_id:095929 AB123979 Streptomyces sp. 316H03 prokMSA_id:095574 AB123980 Streptomyces sp. 316H04 prokMSA_id:095705 AB123981 Streptomyces sp. 316H05 prokMSA_id:096431 AB123982 Streptomyces sp. 316H06 prokMSA_id:095821 AB123983 Streptomyces sp. 316H08 prokMSA_id:097697 AB123984 Streptomyces sp. 316H09 prokMSA_id:097177 AB123985 Streptomyces sp. 316H10 prokMSA_id:096929 AB123986 Streptomyces sp. 319A03 prokMSA_id:097718 AB123989 Streptomyces sp. 319A09 prokMSA_id:097858 AB123991 Streptomyces sp. 319A11 prokMSA_id:097585 AB123992 Streptomyces sp. 319A12 prokMSA_id:096935 AB123993 Streptomyces sp. 319B01 prokMSA_id:098331 AB123994 Streptomyces sp. 319B02 prokMSA_id:098580 AB123997 Streptomyces sp. 319B05 prokMSA_id:096891 AB123999 Streptomyces sp. 319B07 prokMSA_id:098080 AB124000 Streptomyces sp. 319B08 prokMSA_id:097231 AB124003 Streptomyces sp. 319C01 prokMSA_id:098305 AB124004 Streptomyces sp. 319C02 prokMSA_id:097191 AB124027 Streptomyces sp. 319E03 prokMSA_id:098644 AB124029 Streptomyces sp. 319E05 prokMSA_id:098436 AB124031 Streptomyces sp. 319E08 prokMSA_id:097449 AB124032 Streptomyces sp. 319E09 prokMSA_id:097681 AB124033 Streptomyces sp. 319E11 prokMSA_id:098792 AB124035 Streptomyces sp. 319F01 prokMSA_id:095398 AB124037 Streptomyces sp. 319F05 prokMSA_id:097526 AB124039 Streptomyces sp. 319F07 prokMSA_id:096189 AB124040 Streptomyces sp. 319F08 prokMSA_id:098808 AB124041 Streptomyces sp. 319F09 prokMSA_id:097381 AB124043 Streptomyces sp. 319F11 prokMSA_id:097538 AB124044 Streptomyces sp. 319G01 prokMSA_id:096949 AB124046 Streptomyces sp. 319G03 prokMSA_id:096303 AB124047 Streptomyces sp. 319G04 prokMSA_id:096149 AB124050 Streptomyces sp. 319G07 prokMSA_id:097818 AB124057 Streptomyces sp. 319H07 prokMSA_id:096960 AB124058 Streptomyces sp. 319H08 prokMSA_id:096998 AB124062 Streptomyces sp. 322A04 prokMSA_id:095474 AB124065 Streptomyces sp. 322A07 prokMSA_id:097601 AB124067 Streptomyces sp. 322A10 prokMSA_id:095816 AB124074 Streptomyces sp. 322B06 prokMSA_id:098704 AB124080 Streptomyces sp. 322B12 prokMSA_id:098495 AB124096 Streptomyces sp. 322D06 prokMSA_id:096907 AB124099 Streptomyces sp. 322D09 prokMSA_id:097542 AB124105 Streptomyces sp. 322E04 prokMSA_id:097800 AB124106 Streptomyces sp. 322E05 prokMSA_id:096250 AB124107 Streptomyces sp. 322E06 prokMSA_id:095819 AB124110 Streptomyces sp. 322E09 prokMSA_id:097281 AB124112 Streptomyces sp. 322E11 prokMSA_id:098072 AB124119 Streptomyces sp. 322F07 prokMSA_id:098419 AB124129 Streptomyces sp. 322G08 prokMSA_id:096402 AB124130 Streptomyces sp. 322G09 prokMSA_id:095434 AB124133 Streptomyces sp. 322H04 prokMSA_id:095707 AB124137 Streptomyces sp. 322H12 prokMSA_id:098596 AB124141 Streptomyces sp. 331A07 prokMSA_id:096733 AB124142 Streptomyces sp. 331A08 prokMSA_id:097796 AB124146 Streptomyces sp. 331B03 prokMSA_id:097407 AB124151 Streptomyces sp. 331B08 prokMSA_id:096094 AB124153 Streptomyces sp. 331B10 prokMSA_id:096769 AB124158 Streptomyces sp. 331C03 prokMSA_id:097683 AB124161 Streptomyces sp. 331C06 prokMSA_id:095360 AB124162 Streptomyces sp. 331C07 prokMSA_id:095214 AB124168 Streptomyces sp. 331D02 prokMSA_id:096657 AB124172 Streptomyces sp. 331D07 prokMSA_id:097335 AB124206 Streptomyces sp. 331G06 prokMSA_id:097030 AB124213 Streptomyces sp. 331H02 prokMSA_id:097194 AB124215 Streptomyces sp. 331H04 prokMSA_id:095913 AB124216 Streptomyces sp. 331H05 prokMSA_id:098369 AB124220 Streptomyces sp. 331H10 prokMSA_id:096145 AB124221 Streptomyces sp. 331H11 prokMSA_id:097687 AB124223 Streptomyces sp. 334A03 prokMSA_id:095458 AB124228 Streptomyces sp. 334A12 prokMSA_id:095579 AB124229 Streptomyces sp. 334B01 prokMSA_id:095857 AB124230 Streptomyces sp. 334B02 prokMSA_id:095454 AB124231 Streptomyces sp. 334B03 prokMSA_id:097736 AB124234 Streptomyces sp. 334B06 prokMSA_id:095723 AB124235 Streptomyces sp. 334B07 prokMSA_id:098771 AB124237 Streptomyces sp. 334B09 prokMSA_id:097964 AB124238 Streptomyces sp. 334B10 prokMSA_id:097765 AB124239 Streptomyces sp. 334B12 prokMSA_id:097056 AB124240 Streptomyces sp. 334C01 prokMSA_id:096372 AB124241 Streptomyces sp. 334C02 prokMSA_id:095928 AB124242 Streptomyces sp. 334C03 prokMSA_id:095403 AB124243 Streptomyces sp. 334C05 prokMSA_id:097880 AB124245 Streptomyces sp. 334C07 prokMSA_id:098124 AB124246 Streptomyces sp. 334C08 prokMSA_id:096263 AB124247 Streptomyces sp. 334C09 prokMSA_id:095415 AB124248 Streptomyces sp. 334C10 prokMSA_id:097138 AB124250 Streptomyces sp. 334C12 prokMSA_id:096154 AB124255 Streptomyces sp. 334D07 prokMSA_id:096824 AB124259 Streptomyces sp. 334D11 prokMSA_id:097968 AB124261 Streptomyces sp. 334E01 prokMSA_id:095881 AB124262 Streptomyces sp. 334E02 prokMSA_id:097401 AB124267 Streptomyces sp. 334E09 prokMSA_id:097303 AB124268 Streptomyces sp. 334E11 prokMSA_id:097242 AB124269 Streptomyces sp. 334E12 prokMSA_id:098389 AB124271 Streptomyces sp. 334F02 prokMSA_id:097088 AB124272 Streptomyces sp. 334F03 prokMSA_id:095279 AB124273 Streptomyces sp. 334F04 prokMSA_id:096249 AB124274 Streptomyces sp. 334F05 prokMSA_id:097798 AB124276 Streptomyces sp. 334F07 prokMSA_id:097610 AB124278 Streptomyces sp. 334F09 prokMSA_id:097911 AB124279 Streptomyces sp. 334F11 prokMSA_id:098850 AB124280 Streptomyces sp. 334G01 prokMSA_id:098461 AB124281 Streptomyces sp. 334G02 prokMSA_id:097781 AB124286 Streptomyces sp. 334G07 prokMSA_id:096287 AB124289 Streptomyces sp. 334G10 prokMSA_id:096436 AB124290 Streptomyces sp. 334G11 prokMSA_id:098524 AB124291 Streptomyces sp. 334G12 prokMSA_id:097846 AB124292 Streptomyces sp. 334H01 prokMSA_id:097464 AB124293 Streptomyces sp. 334H02 prokMSA_id:096405 AB124295 Streptomyces sp. 334H04 prokMSA_id:098224 AB124298 Streptomyces sp. 334H07 prokMSA_id:096219 AB124299 Streptomyces sp. 334H08 prokMSA_id:096764 AB124310 Streptomyces sp. 337A11 prokMSA_id:097611 AB124311 Streptomyces sp. 337A12 prokMSA_id:098439 AB124313 Streptomyces sp. 337B02 prokMSA_id:097774 AB124314 Streptomyces sp. 337B03 prokMSA_id:097874 AB124315 Streptomyces sp. 337B04 prokMSA_id:098413 AB124319 Streptomyces sp. 337B08 prokMSA_id:098052 AB124320 Streptomyces sp. 337B09 prokMSA_id:096388 AB124321 Streptomyces sp. 337B10 prokMSA_id:095190 AB124324 Streptomyces sp. 337C01 prokMSA_id:095752 AB124325 Streptomyces sp. 337C02 prokMSA_id:096766 AB124327 Streptomyces sp. 337C04 prokMSA_id:097709 AB124328 Streptomyces sp. 337C05 prokMSA_id:096845 AB124336 Streptomyces sp. 337D02 prokMSA_id:096719 AB124340 Streptomyces sp. 337D06 prokMSA_id:097856 AB124344 Streptomyces sp. 337D10 prokMSA_id:096044 AB124349 Streptomyces sp. 337E04 prokMSA_id:096085 AB124351 Streptomyces sp. 337E06 prokMSA_id:098173 AB124353 Streptomyces sp. 337E08 prokMSA_id:096165 AB124361 Streptomyces sp. 337F04 prokMSA_id:098342 AB124362 Streptomyces sp. 337F05 prokMSA_id:098648 AB124366 Streptomyces sp. 337F09 prokMSA_id:097051 AB124367 Streptomyces sp. 337F10 prokMSA_id:097543 AB124368 Streptomyces sp. 337F11 prokMSA_id:096017 AB124373 Streptomyces sp. 337G05 prokMSA_id:096981 AB124374 Streptomyces sp. 337G06 prokMSA_id:095861 AB124375 Streptomyces sp. 337G07 prokMSA_id:097845 AB124376 Streptomyces sp. 337G08 prokMSA_id:097087 AB124384 Streptomyces sp. 337H07 prokMSA_id:095644 AB124388 Streptomyces sp. 337H12 prokMSA_id:097394 AB124392 Streptomyces sp. 340A06 prokMSA_id:097405 AB124398 Streptomyces sp. 340A12 prokMSA_id:096821 AB124399 Streptomyces sp. 340B01 prokMSA_id:096938 AB124401 Streptomyces sp. 340B04 prokMSA_id:095619 AB124403 Streptomyces sp. 340B06 prokMSA_id:095700 AB124405 Streptomyces sp. 340B08 prokMSA_id:096901 AB124406 Streptomyces sp. 340B09 prokMSA_id:096294 AB124407 Streptomyces sp. 340B10 prokMSA_id:095923 AB124445 Streptomyces sp. 340F06 prokMSA_id:095402 AB124461 Streptomyces sp. 340G12 prokMSA_id:098204 AB124464 Streptomyces sp. 340H03 prokMSA_id:096140 AB124467 Streptomyces sp. 340H07 prokMSA_id:097882 AB124468 Streptomyces sp. 340H08 prokMSA_id:096958 AB124471 Streptomyces sp. 343A03 prokMSA_id:095971 AB124474 Streptomyces sp. 343A06 prokMSA_id:095202 AB124475 Streptomyces sp. 343A08 prokMSA_id:096714 AB124476 Streptomyces sp. 343A09 prokMSA_id:098300 AB124477 Streptomyces sp. 343A10 prokMSA_id:098100 AB124483 Streptomyces sp. 343B05 prokMSA_id:098106 AB124484 Streptomyces sp. 343B06 prokMSA_id:096604 AB124493 Streptomyces sp. 343C03 prokMSA_id:097546 AB124495 Streptomyces sp. 343C05 prokMSA_id:097628 AB124504 Streptomyces sp. 343D02 prokMSA_id:097691 AB124508 Streptomyces sp. 343D06 prokMSA_id:096179 AB124512 Streptomyces sp. 343D10 prokMSA_id:098721 AB124514 Streptomyces sp. 343E01 prokMSA_id:095480 AB124516 Streptomyces sp. 343E04 prokMSA_id:096383 AB124525 Streptomyces sp. 343F02 prokMSA_id:097576 AB124526 Streptomyces sp. 343F03 prokMSA_id:098296 AB124527 Streptomyces sp. 343F04 prokMSA_id:098043 AB124530 Streptomyces sp. 343F07 prokMSA_id:096679 AB124531 Streptomyces sp. 343F08 prokMSA_id:098776 AB124533 Streptomyces sp. 343F10 prokMSA_id:095379 AB124534 Streptomyces sp. 343F11 prokMSA_id:097898 AB124535 Streptomyces sp. 343G01 prokMSA_id:098492 AB124537 Streptomyces sp. 343G05 prokMSA_id:096885 AB124538 Streptomyces sp. 343G06 prokMSA_id:096187 AB124539 Streptomyces sp. 343G07 prokMSA_id:095677 AB124540 Streptomyces sp. 343G08 prokMSA_id:096371 AB124543 Streptomyces sp. 343G11 prokMSA_id:098309 AB124544 Streptomyces sp. 343H01 prokMSA_id:097377 AB124545 Streptomyces sp. 343H02 prokMSA_id:095921 AB124546 Streptomyces sp. 343H04 prokMSA_id:098042 AB124549 Streptomyces sp. 343H09 prokMSA_id:074743 AF038635 Streptomyces sp. 1034 prokMSA_id:017056 AF038639 Streptomyces sp. PD260 prokMSA_id:042957 AF038646 Streptomyces sp. 8.17 prokMSA_id:030783 AF091221 Streptomyces sp. 8.17 prokMSA_id:024254 AF091223 Streptomyces sp. PD260 prokMSA_id:032125 AF091224 Streptomyces sp. 1034 prokMSA_id:028774 AF091226 Streptomyces sp. ATCC 49173 prokMSA_id:047910 AF112155 Streptomyces sp. R90-8 prokMSA_id:046133 AF112157 Streptomyces sp. OB-5 prokMSA_id:032424 AF112158 Streptomyces sp. CG11 prokMSA_id:025287 AF332188 Streptomyces acidiscabies prokMSA_id:023782 AF332542 Streptomyces sp. B66 risbosomal prokMSA_id:072156 AF393460 A30 prokMSA_id:047360 AF417593 Streptomyces antibioticus prokMSA_id:041155 AF424747 Streptomyces sp. clone M4rb3 prokMSA_id:040091 AF424748 Streptomyces sp. clone M4rb4 prokMSA_id:048479 AF424751 Streptomyces sp. clone M3sb7 prokMSA_id:072514 AF516280 Streptomyces sp. LS151 prokMSA_id:078565 AF543366 clone H prokMSA_id:078671 AF547035 302 prokMSA_id:078496 AF547048 370 prokMSA_id:078620 AF547049 429 prokMSA_id:011729 AJ007428 Streptomyces sp. str. CFBP4531. prokMSA_id:037688 AJ132634 Streptomyces peucetius prokMSA_id:030368 AJ247091 Bulk1 prokMSA_id:060091 AJ427676 actinomycete clone STM-A1 prokMSA_id:060088 AJ427678 actinomycete clone STM-A3 prokMSA_id:060089 AJ427682 actinomycete clone STM-A7 prokMSA_id:060084 AJ427683 actinomycete clone STM-A8 prokMSA_id:060083 AJ427685 actinomycete clone STM-A10 prokMSA_id:074163 AJ437449 clone 1_32_303 prokMSA_id:045837 AJ437457 clone 1_32_318 prokMSA_id:097414 AJ574929 Streptomyces sp. 605 clone 605 prokMSA_id:049875 AY039480 Soil S100D1 prokMSA_id:028173 AY039483 Soil S31M1 prokMSA_id:047605 AY039490 Soil S55D1 prokMSA_id:040928 AY039495 Soil S65M1 prokMSA_id:041513 AY039509 Soil S97D1 prokMSA_id:061621 AY043571 Streptomyces sp. 1S2.H7 prokMSA_id:050104 AY048909 L10-22hw8-2 prokMSA_id:063036 AY122311 Denitrifying WA2 prokMSA_id:063034 AY122314 Denitrifying WL prokMSA_id:070818 AY128706 Streptomyces sp. 15 prokMSA_id:069831 AY143727 Streptomyces sp. clone P59 prokMSA_id:075739 AY148071 Streptomyces sp. EN10 prokMSA_id:076472 AY148084 Streptomyces sp. EN59 prokMSA_id:075961 AY148085 Streptomyces sp. EN6 prokMSA_id:078503 AY178859 Streptomyces sp. A39 prokMSA_id:011717 X53167 Streptomyces mobaraensis DSM 40587 . prokMSA_id:011722 X53172 Streptomyces luteoverticillatus DPDU 0081. 2.30.1.8.1.3 KTS.SETAE_SUBGROUP 750 seqs 2.30.1.8.1.3.001 OTU 5 seqs prokMSA_id:011827 AF074409 str. J 195. prokMSA_id:011828 AF074410 str. JL 206 DSM 41755. prokMSA_id:011793 AF074412 str. JL 415 DSM 41754. prokMSA_id:011798 AF074413 str. JL 134. prokMSA_id:011831 AF074415 str. JL 83 DSM 41753. 2.30.1.8.1.3.002 OTU 5 seqs prokMSA_id:011829 AF074411 str. CN 671 DSM 41752. prokMSA_id:011830 AF074414 str. CN 668. prokMSA_id:089875 AY314780 Streptacidiphilus jiangxiensis 33214 prokMSA_id:090474 AY314781 Streptacidiphilus jiangxiensis 32214 prokMSA_id:098108 AY389139 Streptacidiphilus jiangxiensis 22202 2.30.1.8.1.3.007 OTU 39 seqs prokMSA_id:020942 AB022868 Kitasatospora setae prokMSA_id:050005 AB022869 Kitasatospora phosalacinea prokMSA_id:045323 AB022870 Kitasatospora griseola prokMSA_id:032322 AB022871 Kitasatospora cochleata prokMSA_id:018850 AB022872 Kitasatospora cystarginea prokMSA_id:052818 AB022874 Kitasatospora kifunense prokMSA_id:051815 AB022875 Kitasatospora sp. SK-3255 prokMSA_id:026737 AB022876 Kitasatospora sp. SK-3406 prokMSA_id:032241 AB022877 Kitasatospora sp. SK-3412 prokMSA_id:040717 AB022878 Kitasatospora sp. SK-3421 prokMSA_id:023352 AB022879 Kitasatospora sp. OM-5023 prokMSA_id:027121 AB045881 Streptomyces aureofaciens prokMSA_id:011816 AF050493 Kitasatospora cheerisanensis str. YC75. prokMSA_id:011825 AF060792 Kitasatospora C2 str. C2. prokMSA_id:042575 AF131374 Kitasatospora sp. IM-103B prokMSA_id:047402 AF131375 Kitasatospora sp. IM-1725 prokMSA_id:050621 AF131376 Kitasatospora sp. IM-6571 prokMSA_id:032156 AF131377 Kitasatospora sp. IM-6573 prokMSA_id:050795 AF131378 Kitasatospora sp. IM-6832 prokMSA_id:044130 AF131379 Kitasatospora sp. IM-7206 prokMSA_id:042545 AF131380 Kitasatospora sp. IM-8074 prokMSA_id:042735 AF306638 Streptomyces sp. PR4.0307 prokMSA_id:036266 AJ427923 Kitasatospora sp. PU22869 prokMSA_id:086939 AY260167 Streptomyces sampliensis strain VT-36 prokMSA_id:090076 AY314782 Streptomyces sp. FXJ14 prokMSA_id:011801 U93312 Kitasatospora azatica IFO 13803 . prokMSA_id:011790 U93314 Kitasatospora brunnea IFO 14627. prokMSA_id:024904 U93316 Kitasatospora cochleata strain IFO 14768 prokMSA_id:011821 U93318 Kitasatospora cystarginea str. RK-419 JCM 7356 . prokMSA_id:011796 U93320 Kitasatospora griseola str. AM-9660 JCM 3339. prokMSA_id:011802 U93322 Kitasatospora kifunense JCM 9081. prokMSA_id:011823 U93324 Kitasatospora mediocidica IFO 14789. prokMSA_id:011797 U93326 Kitasatospora melanogena JCM 3337. prokMSA_id:011795 U93328 Kitasatospora paracochleata str. 14769. prokMSA_id:011789 U93330 Kitasatospora phosalacinea str. KA-338 JCM 3340 . prokMSA_id:011815 U93332 Kitasatospora setae JCM 3304 . prokMSA_id:011792 U93334 Kitasatospora streptosporus IFO 14362. prokMSA_id:011824 Y15504 Streptomyces aureofaciens str. A-377 NRRL 2209 . prokMSA_id:011826 Y15505 Streptomyces sp. str. 317. 2.30.1.8.1.3.013 OTU 1 seq prokMSA_id:011791 AF170772 clone QSSC8L-12. 2.30.1.8.1.3.016 OTU 1 seq prokMSA_id:011756 X53173 Streptomyces lavendulae subsp. lavendulae DSM 2014 . 2.30.1.8.1.3.021 OTU 1 seq prokMSA_id:030101 AB045864 Streptomyces hygroscopicus subsp. hygroscopicus 2.30.1.8.1.3.024 OTU 1 seq prokMSA_id:033773 AF112169 Streptomyces sp. EF-16 2.30.1.8.1.3.025 OTU 1 seq prokMSA_id:036230 AF385681 Streptomyces beijiangensis 2.30.1.8.1.3.026 OTU 1 seq prokMSA_id:037731 AJ308572 Streptomyces sp. Soll14 strain Soll14 2.30.1.8.1.3.027 OTU 1 seq prokMSA_id:045079 AF318046 Streptomyces olivaceus 2.30.1.8.1.3.028 OTU 1 seq prokMSA_id:048363 AY053479 AT425_EubY10 2.30.1.8.1.3.029 OTU 1 seq prokMSA_id:075266 AY154567 earthworm cast clone c203 2.30.1.8.1.3.030 OTU 1 seq prokMSA_id:076164 AY150885 Rubrobacteridae clone glen99_12 2.30.1.8.1.3.031 OTU 1 seq prokMSA_id:076330 AY148079 Streptomyces sp. EN35 2.30.1.8.1.3.032 OTU 1 seq prokMSA_id:081060 AB105068 Streptomyces aureofaciens strain:CMUAc130 2.30.1.8.1.3.033 OTU 1 seq prokMSA_id:082871 AJ555222 actinomycete clone AOF16 2.30.1.8.1.3.034 OTU 1 seq prokMSA_id:083589 AY214725 actinobacterium clone SL2-2-F7F 2.30.1.8.1.3.035 OTU 1 seq prokMSA_id:084468 AJ555229 actinomycete clone AOF41 2.30.1.8.1.3.036 OTU 1 seq prokMSA_id:090663 AF443587 clone C-F-28 2.30.1.8.1.3.038 OTU 114 seqs prokMSA_id:011807 AB006154 Trichotomospora caesia IFO 14562. prokMSA_id:011777 AB006159 Streptomyces microstreptospora IFO 14669. prokMSA_id:011783 AB030567 Streptomyces griseus subsp. griseus str. 2247. prokMSA_id:011784 AB030568 Streptomyces griseus subsp. griseus str. 2247. prokMSA_id:011785 AB030569 Streptomyces griseus subsp. griseus str. 2247. prokMSA_id:011786 AB030570 Streptomyces griseus subsp. griseus str. 2247. prokMSA_id:011787 AB030571 Streptomyces griseus subsp. griseus str. 2247. prokMSA_id:011788 AB030572 Streptomyces griseus subsp. griseus str. 2247. prokMSA_id:044772 AB045869 Streptomyces clavuligerus prokMSA_id:045786 AB045872 Streptomyces argenteolus prokMSA_id:041535 AB045876 Streptomyces bobili prokMSA_id:032576 AB045879 Streptomyces tauricus prokMSA_id:049364 AB045887 Streptomyces peucetius prokMSA_id:017191 AB045890 Streptomyces venezuelae prokMSA_id:011780 AF012736 Streptomyces ASSF13 str. ASSF13. prokMSA_id:011772 AF012738 Streptomyces ASSF22 str. ASSF22. prokMSA_id:011773 AF012739 Streptomyces ASB27 str. ASB27. prokMSA_id:011781 AF012740 Streptomyces ASB33 str. ASB33. prokMSA_id:019804 AF112160 Streptomyces caviscabies strain ATCC51928 prokMSA_id:048947 AF112170 Streptomyces sp. EF-25 prokMSA_id:020768 AF112174 Streptomyces sp. EF-91 prokMSA_id:035011 AF112175 Streptomyces sp. EF-93 prokMSA_id:031028 AF112179 Streptomyces sp. OB-35 prokMSA_id:017927 AF131535 Streptomyces sp. IM-6958 prokMSA_id:017705 AF131539 Streptomyces sp. IM-6975 prokMSA_id:023079 AF131549 Streptomyces sp. IM-7082 prokMSA_id:048467 AF131553 Streptomyces sp. IM-7138 prokMSA_id:050043 AF131561 Streptomyces sp. IM-7169 prokMSA_id:041830 AF131570 Streptomyces sp. IM-7203 prokMSA_id:042243 AF131574 Streptomyces sp. IM-7235 prokMSA_id:069641 AF131578 Streptomyces sp. IM-7255 prokMSA_id:021093 AF131586 Streptomyces sp. IM-7341 prokMSA_id:029907 AF131587 Streptomyces sp. IM-7347 prokMSA_id:038424 AF131589 Streptomyces sp. IM-7356 prokMSA_id:027519 AF131597 Streptomyces sp. IM-7452 prokMSA_id:024555 AF221837 Streptomyces sp. AA8321 prokMSA_id:045302 AF332543 Streptomyces sp. B7 prokMSA_id:038300 AF361784 Streptomyces sp. S63 prokMSA_id:051675 AF389343 Streptomyces sp. YIM26 prokMSA_id:050476 AF389344 Streptomyces sp. YIM8 prokMSA_id:064271 AF395539 Streptomyces sp. YU100 prokMSA_id:062750 AF401982 Streptomyces sp. P5 prokMSA_id:062746 AF403713 Streptomyces sp. C1 prokMSA_id:058872 AF423076 Actinobacterium '#59 white' prokMSA_id:072661 AF423240 soil clone 228-1 prokMSA_id:035160 AF423260 soil clone 41-1 prokMSA_id:043555 AF429390 Streptomyces sp. VTT E-99-1326 A4 prokMSA_id:033895 AF429391 Streptomyces sp. VTT E-99-1327 A6 prokMSA_id:030648 AF429392 Streptomyces sp. VTT E-99-1328 A14 prokMSA_id:034787 AF429395 Streptomyces sp. VTT E-99-1331 A91 prokMSA_id:043914 AF429396 Streptomyces sp. VTT E-99-1332 B301 prokMSA_id:021902 AF429398 Streptomyces sp. VTT E-99-1334 B309 prokMSA_id:054592 AF429399 Streptomyces sp. VTT E-99-1335 B323 prokMSA_id:037181 AF454764 Streptomyces lateritius prokMSA_id:067018 AF500071 Streptomyces phaeochromogenes prokMSA_id:093822 AF503490 Streptomyces cyaneogriseus prokMSA_id:065596 AF513223 Streptomyces viridocyaneus prokMSA_id:011768 AJ007430 Streptomyces sp. str. CFBP4543. prokMSA_id:042621 AJ308571 Streptomyces sp. Sm22 strain Sm22 prokMSA_id:043763 AJ308574 Streptomyces sp. Soll53 strain Soll53 prokMSA_id:017449 AJ308575 Streptomyces sp. So10 strain So10 prokMSA_id:044555 AJ308576 Streptomyces sp. So54 strain So54 prokMSA_id:035685 AJ308577 Streptomyces sp. Nm5 strain Nm5 prokMSA_id:023098 AJ391815 Streptomyces sp. NRRL 5182 prokMSA_id:063868 AJ494864 Streptomyces flavogriseus strain CBS 101.34T prokMSA_id:078850 AJ536294 Streptomyces sp. AP19-1 strain AP19-1 prokMSA_id:038469 AY015428 Streptomyces kathirae prokMSA_id:030880 AY029698 Streptomyces sp. KN-0479 prokMSA_id:035664 AY029699 Streptomyces sp. KN-1220 prokMSA_id:066695 AY094368 Streptomyces aureus B7319 prokMSA_id:066693 AY094371 Streptomyces griseus subsp. griseus ISP 5236 prokMSA_id:056621 AY114179 Streptomyces sp. AS 4.1182 prokMSA_id:075518 AY148074 Streptomyces sp. EN23 prokMSA_id:076054 AY148078 Streptomyces sp. EN30 prokMSA_id:077191 AY148083 Streptomyces sp. EN57 prokMSA_id:076219 AY154479 Streptomyces sp. A13 prokMSA_id:077539 AY167847 Streptomyces caviscabies strain SAFR-024 prokMSA_id:083521 AY217498 Actinobacterium WCIP5 prokMSA_id:089816 AY227781 Streptomyces sp. NRRL 30566 prokMSA_id:088857 AY277559 Streptomyces lateritius strain CSC113.1 prokMSA_id:087482 AY278870 Streptomyces sp. CT3 prokMSA_id:087674 AY291590 Streptomyces sp. EN22 prokMSA_id:089186 AY295790 Streptomyces sp. 40001 prokMSA_id:088179 AY295792 Streptomyces sp. 40004 prokMSA_id:089386 AY295794 Streptomyces sp. 40006 prokMSA_id:087626 AY299621 Streptomyces sp. YIM G-Q-14 prokMSA_id:088020 AY299622 Streptomyces sp. YIM 80038 prokMSA_id:087374 AY299623 Streptomyces sp. YIM 80136 prokMSA_id:087716 AY299624 Streptomyces sp. YIM 80138 prokMSA_id:087444 AY299625 Streptomyces sp. YIM 80147 prokMSA_id:090690 AY314784 Streptomyces sp. FXJ04 prokMSA_id:092939 AY360338 Streptomyces sp. 050702/A379 prokMSA_id:094180 AY370772 Streptomyces himgiriensis prokMSA_id:011764 D63872 Streptomyces setonii ATCC 25497 . prokMSA_id:011811 D85112 Streptomyces lavendulae subsp. lavendulae IFO 12344. prokMSA_id:011757 D85119 Streptomyces virginiae IFO 3729 . prokMSA_id:054173 M76388 S.griseus 23S and 5S prokMSA_id:011762 U22972 Streptomyces sp. str. GP 772; isolate E. Atalan A46R47. prokMSA_id:011804 U22973 Streptomyces sp. str. GP 773; isolate E. Atalan A81319. prokMSA_id:011800 U22974 Streptomyces sp. str. GP 770; isolate E. Atalan A46R51. prokMSA_id:011766 U93336 Streptomyces JCM7249 JCM 7249. prokMSA_id:011767 U93338 Streptomyces JCM7250 JCM 7250. prokMSA_id:011776 X61478 Streptomyces griseus subsp. griseus KCTC 9080 =rrnE . prokMSA_id:011794 X79326 Streptomyces ornatus DSM 40307. prokMSA_id:073604 X79326 S.ornatus DSM 40307 prokMSA_id:011806 X80825 Streptomyces subrutilus DSM 40445 . prokMSA_id:011770 X87309 str. SR 119. prokMSA_id:011769 X92614 Micromonospora megalomicea subsp. megalomicea str. DSM 43892. prokMSA_id:011808 X95471 Actinomyces sp. str. SR 25. prokMSA_id:011805 Y10842 Streptomyces sp. str. A46R62. prokMSA_id:011765 Y10844 Streptomyces sp. str. B71277. prokMSA_id:011771 Y15498 Streptomyces sp. str. 254. prokMSA_id:011778 Y15501 Streptomyces griseus ATCC 10137. prokMSA_id:011779 Y15502 Streptomyces griseus. 2.30.1.8.1.3.999 poor quality 571 seqs prokMSA_id:011774 AB015854 Streptomyces microstreptospora str. AS4.1146. prokMSA_id:074748 AB054902 Streptomyces sp. 1117 prokMSA_id:036329 AB054906 Streptomyces sp. 1733 prokMSA_id:046811 AB054929 Streptomyces sp. 1705a prokMSA_id:026229 AB054931 Streptomyces sp. 1707 prokMSA_id:098344 AB122708 Streptomyces flavovirens prokMSA_id:095629 AB122709 Streptomyces olivochromogenes prokMSA_id:096135 AB122710 Streptomyces sindenensis prokMSA_id:097993 AB122712 Streptomyces cinereus prokMSA_id:095962 AB122715 Streptomyces kanamyceticus prokMSA_id:096413 AB122719 Streptomyces galilaeus prokMSA_id:098598 AB122722 Streptomyces avellaneus prokMSA_id:097791 AB122736 Streptomyces toxytricini prokMSA_id:095993 AB122737 Streptomyces vinaceus prokMSA_id:096003 AB122738 Streptomyces nashvillensis prokMSA_id:095545 AB122740 Streptomyces rubiginosohelvolus prokMSA_id:098837 AB122746 Streptomyces aburaviensis prokMSA_id:095276 AB122747 Streptomyces nitrosporeus prokMSA_id:096336 AB122749 Streptomyces misakiensis prokMSA_id:095213 AB122750 Streptomyces xantholiticus prokMSA_id:097777 AB122751 Streptomyces griseoplanus prokMSA_id:098112 AB122756 Streptomyces noboritoensis prokMSA_id:096455 AB122757 Streptomyces purpeofuscus prokMSA_id:096360 AB122764 Streptomyces albovinaceus prokMSA_id:098152 AB122768 Streptomyces atratus prokMSA_id:098162 AB122769 Streptomyces avidinii prokMSA_id:098171 AB122770 Streptomyces lavendulae subsp. grasserius prokMSA_id:098741 AB122773 Streptomyces halstedii prokMSA_id:097158 AB122774 Streptomyces willmorei prokMSA_id:096802 AB122778 Streptomyces peucetius prokMSA_id:095442 AB122789 Streptomyces sp. 384A12 prokMSA_id:096063 AB122790 Streptomyces sp. 384B01 prokMSA_id:096267 AB122791 Streptomyces sp. 384B02 prokMSA_id:095837 AB122792 Streptomyces sp. 384B03 prokMSA_id:097453 AB122793 Streptomyces sp. 384B05 prokMSA_id:098275 AB122794 Streptomyces sp. 384B06 prokMSA_id:096381 AB122795 Streptomyces sp. 384B07 prokMSA_id:098451 AB122799 Streptomyces sp. 384B11 prokMSA_id:095982 AB122802 Streptomyces sp. 384C02 prokMSA_id:096975 AB122803 Streptomyces sp. 384C03 prokMSA_id:097932 AB122807 Streptomyces sp. 384C07 prokMSA_id:096513 AB122809 Streptomyces sp. 384C09 prokMSA_id:098315 AB122810 Streptomyces sp. 384C11 prokMSA_id:098469 AB122811 Streptomyces sp. 384C12 prokMSA_id:096815 AB122812 Streptomyces sp. 384D01 prokMSA_id:096922 AB122813 Streptomyces sp. 384D02 prokMSA_id:095243 AB122818 Streptomyces sp. 384D08 prokMSA_id:098852 AB122822 Streptomyces sp. 384D12 prokMSA_id:098347 AB122824 Streptomyces sp. 384E04 prokMSA_id:097226 AB122825 Streptomyces sp. 384E05 prokMSA_id:096458 AB122831 Streptomyces sp. 384F03 prokMSA_id:095552 AB122832 Streptomyces sp. 384F05 prokMSA_id:096347 AB122833 Streptomyces sp. 384F06 prokMSA_id:098498 AB122835 Streptomyces sp. 384F08 prokMSA_id:095767 AB122836 Streptomyces sp. 384F09 prokMSA_id:097353 AB122838 Streptomyces sp. 384F11 prokMSA_id:095820 AB122840 Streptomyces sp. 384G01 prokMSA_id:098690 AB122845 Streptomyces sp. 384G12 prokMSA_id:097091 AB122852 Streptomyces sp. 384H11 prokMSA_id:098205 AB122853 Streptomyces sp. 384H12 prokMSA_id:095495 AB122854 Streptomyces sp. 387A03 prokMSA_id:096010 AB122866 Kitasatospora sp. 387B08 prokMSA_id:095343 AB122881 Streptomyces sp. 387D12 prokMSA_id:095377 AB122892 Streptomyces sp. 387F05 prokMSA_id:098555 AB122896 Streptomyces sp. 387F10 prokMSA_id:095307 AB122900 Streptomyces sp. 387G02 prokMSA_id:098630 AB122902 Streptomyces sp. 387G04 prokMSA_id:096073 AB122912 Streptomyces sp. 387H02 prokMSA_id:097509 AB122943 Streptomyces sp. 410C09 prokMSA_id:095299 AB122947 Streptomyces sp. 410D03 prokMSA_id:095339 AB122974 Streptomyces sp. 410H01 prokMSA_id:095900 AB122975 Streptomyces sp. 410H08 prokMSA_id:096715 AB122987 Streptomyces sp. 411B12 prokMSA_id:095335 AB122992 Streptomyces sp. 411C07 prokMSA_id:098838 AB123021 Streptomyces sp. 411F11 prokMSA_id:098791 AB123066 Streptomyces sp. 413D06 prokMSA_id:095753 AB123067 Streptomyces sp. 413D07 prokMSA_id:095989 AB123072 Streptomyces sp. 413E10 prokMSA_id:098810 AB123133 Streptomyces sp. 415E05 prokMSA_id:097503 AB123135 Streptomyces sp. 415E07 prokMSA_id:097893 AB123166 Streptomyces sp. 415H07 prokMSA_id:095560 AB123183 Streptomyces sp. 418B03 prokMSA_id:098095 AB123187 Streptomyces sp. 418B07 prokMSA_id:098646 AB123196 Streptomyces sp. 418C04 prokMSA_id:095294 AB123203 Streptomyces sp. 418C12 prokMSA_id:098512 AB123218 Streptomyces sp. 418E10 prokMSA_id:097605 AB123226 Streptomyces sp. 418F09 prokMSA_id:097975 AB123231 Streptomyces sp. 418G06 prokMSA_id:096408 AB123232 Streptomyces sp. 418G07 prokMSA_id:097883 AB123233 Streptomyces sp. 418G08 prokMSA_id:096578 AB123243 Streptomyces sp. 418H12 prokMSA_id:098336 AB123244 Streptomyces sp. 419A03 prokMSA_id:095834 AB123245 Streptomyces sp. 419A04 prokMSA_id:098260 AB123246 Streptomyces sp. 419A05 prokMSA_id:095865 AB123247 Streptomyces sp. 419A06 prokMSA_id:095177 AB123250 Streptomyces sp. 419A10 prokMSA_id:097233 AB123256 Streptomyces sp. 419B05 prokMSA_id:098214 AB123271 Streptomyces sp. 419C09 prokMSA_id:097220 AB123273 Streptomyces sp. 419C11 prokMSA_id:097433 AB123275 Streptomyces sp. 419D02 prokMSA_id:096047 AB123290 Streptomyces sp. 419E07 prokMSA_id:097876 AB123297 Streptomyces sp. 419F02 prokMSA_id:098188 AB123355 Streptomyces sp. 424G10 prokMSA_id:097587 AB123361 Streptomyces sp. 424H06 prokMSA_id:097253 AB123363 Streptomyces sp. 424H08 prokMSA_id:097563 AB123374 Streptomyces sp. 428B03 prokMSA_id:095509 AB123375 Streptomyces sp. 428B05 prokMSA_id:098269 AB123377 Streptomyces sp. 428B08 prokMSA_id:097157 AB123380 Streptomyces sp. 428B11 prokMSA_id:096701 AB123391 Streptomyces sp. 428C12 prokMSA_id:095625 AB123393 Streptomyces sp. 428D04 prokMSA_id:097809 AB123395 Streptomyces sp. 428D06 prokMSA_id:095953 AB123397 Streptomyces sp. 428D08 prokMSA_id:097636 AB123398 Streptomyces sp. 428D09 prokMSA_id:095519 AB123433 Streptomyces sp. 431A03 prokMSA_id:097237 AB123435 Streptomyces sp. 431A06 prokMSA_id:098395 AB123445 Streptomyces sp. 431B09 prokMSA_id:096626 AB123450 Streptomyces sp. 431C03 prokMSA_id:097752 AB123451 Streptomyces sp. 431C04 prokMSA_id:096384 AB123452 Streptomyces sp. 431C05 prokMSA_id:097440 AB123454 Streptomyces sp. 431C07 prokMSA_id:096887 AB123474 Streptomyces sp. 431E05 prokMSA_id:096482 AB123483 Streptomyces sp. 431G01 prokMSA_id:097222 AB123484 Streptomyces sp. 431G02 prokMSA_id:097980 AB123505 Streptomyces sp. 434A07 prokMSA_id:098526 AB123506 Streptomyces sp. 434A11 prokMSA_id:098705 AB123525 Streptomyces sp. 434D05 prokMSA_id:095544 AB123527 Streptomyces sp. 434D07 prokMSA_id:095911 AB123545 Streptomyces sp. 434F02 prokMSA_id:097660 AB123547 Streptomyces sp. 434F04 prokMSA_id:096245 AB123562 Streptomyces sp. 434H01 prokMSA_id:097393 AB123563 Streptomyces sp. 434H02 prokMSA_id:095390 AB123571 Streptomyces sp. 303A04 prokMSA_id:098747 AB123572 Streptomyces sp. 303A05 prokMSA_id:095742 AB123573 Streptomyces sp. 303A06 prokMSA_id:096236 AB123574 Streptomyces sp. 303A07 prokMSA_id:097184 AB123575 Streptomyces sp. 303A08 prokMSA_id:096450 AB123577 Streptomyces sp. 303A10 prokMSA_id:095210 AB123578 Streptomyces sp. 303A11 prokMSA_id:096524 AB123580 Streptomyces sp. 303B01 prokMSA_id:096056 AB123581 Streptomyces sp. 303B02 prokMSA_id:096529 AB123582 Streptomyces sp. 303B03 prokMSA_id:097339 AB123583 Streptomyces sp. 303B04 prokMSA_id:096123 AB123584 Streptomyces sp. 303B05 prokMSA_id:095737 AB123585 Streptomyces sp. 303B06 prokMSA_id:095806 AB123587 Streptomyces sp. 303B08 prokMSA_id:098855 AB123590 Streptomyces sp. 303B11 prokMSA_id:096586 AB123591 Streptomyces sp. 303B12 prokMSA_id:098050 AB123592 Streptomyces sp. 303C01 prokMSA_id:097599 AB123593 Streptomyces sp. 303C02 prokMSA_id:096906 AB123598 Streptomyces sp. 303C07 prokMSA_id:096566 AB123599 Streptomyces sp. 303C08 prokMSA_id:097805 AB123601 Streptomyces sp. 303C10 prokMSA_id:098695 AB123604 Streptomyces sp. 303D01 prokMSA_id:097475 AB123606 Kitasatospora sp. 303D03 prokMSA_id:098655 AB123607 Streptomyces sp. 303D04 prokMSA_id:098181 AB123609 Streptomyces sp. 303D08 prokMSA_id:097619 AB123610 Streptomyces sp. 303D09 prokMSA_id:096452 AB123611 Streptomyces sp. 303D10 prokMSA_id:097190 AB123614 Streptomyces sp. 303E01 prokMSA_id:096710 AB123617 Streptomyces sp. 303E04 prokMSA_id:098607 AB123622 Streptomyces sp. 303E10 prokMSA_id:095322 AB123627 Streptomyces sp. 303F03 prokMSA_id:096338 AB123632 Streptomyces sp. 303F09 prokMSA_id:097728 AB123634 Streptomyces sp. 303F12 prokMSA_id:096525 AB123635 Streptomyces sp. 303G02 prokMSA_id:095329 AB123637 Streptomyces sp. 303G04 prokMSA_id:097566 AB123639 Streptomyces sp. 303G06 prokMSA_id:096814 AB123643 Streptomyces sp. 303G10 prokMSA_id:097316 AB123646 Streptomyces sp. 303H02 prokMSA_id:097780 AB123648 Streptomyces sp. 303H04 prokMSA_id:097028 AB123650 Streptomyces sp. 303H06 prokMSA_id:096968 AB123651 Streptomyces sp. 303H07 prokMSA_id:095912 AB123652 Streptomyces sp. 303H08 prokMSA_id:098136 AB123657 Streptomyces sp. 306A04 prokMSA_id:095983 AB123659 Streptomyces sp. 306A07 prokMSA_id:096965 AB123660 Streptomyces sp. 306A08 prokMSA_id:095281 AB123661 Streptomyces sp. 306A09 prokMSA_id:097918 AB123663 Streptomyces sp. 306B01 prokMSA_id:095848 AB123664 Streptomyces sp. 306B02 prokMSA_id:097502 AB123666 Streptomyces sp. 306B04 prokMSA_id:096904 AB123667 Streptomyces sp. 306B05 prokMSA_id:096808 AB123669 Streptomyces sp. 306B07 prokMSA_id:098489 AB123676 Streptomyces sp. 306C02 prokMSA_id:095208 AB123678 Streptomyces sp. 306C04 prokMSA_id:096796 AB123680 Streptomyces sp. 306C06 prokMSA_id:097160 AB123682 Streptomyces sp. 306C08 prokMSA_id:096967 AB123684 Streptomyces sp. 306C10 prokMSA_id:097074 AB123690 Streptomyces sp. 306D06 prokMSA_id:096112 AB123694 Streptomyces sp. 306D10 prokMSA_id:098010 AB123714 Streptomyces sp. 306F09 prokMSA_id:095669 AB123725 Streptomyces sp. 306H01 prokMSA_id:097637 AB123726 Streptomyces sp. 306H02 prokMSA_id:096994 AB123727 Streptomyces sp. 306H03 prokMSA_id:095869 AB123728 Streptomyces sp. 306H05 prokMSA_id:098718 AB123729 Streptomyces sp. 306H06 prokMSA_id:098518 AB123730 Streptomyces sp. 306H07 prokMSA_id:095321 AB123732 Streptomyces sp. 306H10 prokMSA_id:096932 AB123734 Streptomyces sp. 310A03 prokMSA_id:097001 AB123735 Streptomyces sp. 310A04 prokMSA_id:098519 AB123737 Streptomyces sp. 310A06 prokMSA_id:097657 AB123738 Streptomyces sp. 310A07 prokMSA_id:096488 AB123740 Streptomyces sp. 310A09 prokMSA_id:098723 AB123741 Streptomyces sp. 310A10 prokMSA_id:096486 AB123745 Streptomyces sp. 310B02 prokMSA_id:095896 AB123746 Streptomyces sp. 310B03 prokMSA_id:095532 AB123748 Kitasatospora sp. 310B05 prokMSA_id:097621 AB123750 Streptomyces sp. 310B07 prokMSA_id:095583 AB123752 Streptomyces sp. 310B09 prokMSA_id:095825 AB123753 Streptomyces sp. 310B10 prokMSA_id:096322 AB123755 Streptomyces sp. 310B12 prokMSA_id:096707 AB123756 Streptomyces sp. 310C01 prokMSA_id:096848 AB123758 Streptomyces sp. 310C03 prokMSA_id:096323 AB123761 Streptomyces sp. 310C06 prokMSA_id:096119 AB123778 Streptomyces sp. 310E01 prokMSA_id:097662 AB123780 Streptomyces sp. 310E03 prokMSA_id:097699 AB123781 Streptomyces sp. 310E04 prokMSA_id:096643 AB123783 Streptomyces sp. 310E07 prokMSA_id:098749 AB123788 Streptomyces sp. 310E12 prokMSA_id:098505 AB123792 Streptomyces sp. 310F04 prokMSA_id:098536 AB123796 Streptomyces sp. 310F08 prokMSA_id:098553 AB123797 Streptomyces sp. 310F09 prokMSA_id:095693 AB123798 Streptomyces sp. 310F10 prokMSA_id:096164 AB123799 Streptomyces sp. 310F11 prokMSA_id:096888 AB123801 Streptomyces sp. 310G01 prokMSA_id:098543 AB123802 Streptomyces sp. 310G02 prokMSA_id:098339 AB123803 Streptomyces sp. 310G03 prokMSA_id:095534 AB123810 Streptomyces sp. 310G11 prokMSA_id:096630 AB123813 Streptomyces sp. 310H02 prokMSA_id:097199 AB123814 Streptomyces sp. 310H03 prokMSA_id:095242 AB123817 Streptomyces sp. 310H06 prokMSA_id:095421 AB123824 Streptomyces sp. 313A03 prokMSA_id:096740 AB123829 Streptomyces sp. 313A08 prokMSA_id:095760 AB123830 Streptomyces sp. 313A09 prokMSA_id:098670 AB123833 Streptomyces sp. 313A12 prokMSA_id:095475 AB123834 Streptomyces sp. 313B01 prokMSA_id:095780 AB123835 Streptomyces sp. 313B02 prokMSA_id:095465 AB123838 Streptomyces sp. 313B05 prokMSA_id:095358 AB123839 Streptomyces sp. 313B06 prokMSA_id:098513 AB123841 Streptomyces sp. 313B08 prokMSA_id:098156 AB123843 Streptomyces sp. 313B10 prokMSA_id:096464 AB123849 Streptomyces sp. 313C04 prokMSA_id:097558 AB123850 Streptomyces sp. 313C05 prokMSA_id:095852 AB123869 Streptomyces sp. 313E03 prokMSA_id:095514 AB123875 Streptomyces sp. 313E10 prokMSA_id:096536 AB123880 Streptomyces sp. 313F04 prokMSA_id:098551 AB123881 Streptomyces sp. 313F05 prokMSA_id:098548 AB123885 Streptomyces sp. 313F09 prokMSA_id:095675 AB123886 Streptomyces sp. 313F10 prokMSA_id:098409 AB123889 Streptomyces sp. 313G01 prokMSA_id:096693 AB123891 Streptomyces sp. 313G03 prokMSA_id:096271 AB123892 Streptomyces sp. 313G04 prokMSA_id:096983 AB123893 Streptomyces sp. 313G05 prokMSA_id:095580 AB123894 Streptomyces sp. 313G06 prokMSA_id:095470 AB123895 Streptomyces sp. 313G07 prokMSA_id:095592 AB123896 Streptomyces sp. 313G08 prokMSA_id:095430 AB123897 Streptomyces sp. 313G09 prokMSA_id:098714 AB123898 Streptomyces sp. 313G11 prokMSA_id:096647 AB123901 Streptomyces sp. 313H02 prokMSA_id:096114 AB123903 Streptomyces sp. 313H04 prokMSA_id:097279 AB123904 Streptomyces sp. 313H05 prokMSA_id:095315 AB123906 Streptomyces sp. 313H07 prokMSA_id:095440 AB123907 Streptomyces sp. 313H08 prokMSA_id:096492 AB123908 Streptomyces sp. 313H09 prokMSA_id:095539 AB123925 Streptomyces sp. 316B08 prokMSA_id:097813 AB123926 Streptomyces sp. 316B09 prokMSA_id:098280 AB123928 Streptomyces sp. 316B11 prokMSA_id:095832 AB123929 Streptomyces sp. 316B12 prokMSA_id:095701 AB123932 Streptomyces sp. 316C03 prokMSA_id:098467 AB123935 Streptomyces sp. 316C07 prokMSA_id:097929 AB123946 Streptomyces sp. 316D09 prokMSA_id:098119 AB123947 Streptomyces sp. 316D10 prokMSA_id:095435 AB123948 Streptomyces sp. 316D11 prokMSA_id:098053 AB123957 Streptomyces sp. 316E11 prokMSA_id:096223 AB123962 Streptomyces sp. 316F06 prokMSA_id:098200 AB123967 Streptomyces sp. 316G01 prokMSA_id:097676 AB123970 Streptomyces sp. 316G04 prokMSA_id:097359 AB123971 Streptomyces sp. 316G05 prokMSA_id:096674 AB123976 Streptomyces sp. 316G12 prokMSA_id:096396 AB123977 Streptomyces sp. 316H01 prokMSA_id:095719 AB123987 Streptomyces sp. 319A05 prokMSA_id:097832 AB123988 Streptomyces sp. 319A06 prokMSA_id:097788 AB123990 Streptomyces sp. 319A10 prokMSA_id:097896 AB124010 Streptomyces sp. 319C09 prokMSA_id:096556 AB124011 Streptomyces sp. 319C10 prokMSA_id:098637 AB124023 Streptomyces sp. 319D11 prokMSA_id:096221 AB124024 Streptomyces sp. 319D12 prokMSA_id:097457 AB124026 Streptomyces sp. 319E02 prokMSA_id:095566 AB124030 Streptomyces sp. 319E06 prokMSA_id:095925 AB124045 Streptomyces sp. 319G02 prokMSA_id:097897 AB124049 Streptomyces sp. 319G06 prokMSA_id:097095 AB124061 Streptomyces sp. 322A03 prokMSA_id:097070 AB124064 Streptomyces sp. 322A06 prokMSA_id:097073 AB124070 Streptomyces sp. 322B01 prokMSA_id:096720 AB124073 Streptomyces sp. 322B05 prokMSA_id:097090 AB124076 Streptomyces sp. 322B08 prokMSA_id:097363 AB124077 Streptomyces sp. 322B09 prokMSA_id:096302 AB124084 Streptomyces sp. 322C05 prokMSA_id:097794 AB124087 Streptomyces sp. 322C08 prokMSA_id:097480 AB124089 Streptomyces sp. 322C10 prokMSA_id:097136 AB124090 Streptomyces sp. 322C11 prokMSA_id:097888 AB124091 Streptomyces sp. 322D01 prokMSA_id:097671 AB124098 Streptomyces sp. 322D08 prokMSA_id:098423 AB124102 Streptomyces sp. 322E01 prokMSA_id:098651 AB124108 Streptomyces sp. 322E07 prokMSA_id:098565 AB124111 Streptomyces sp. 322E10 prokMSA_id:096201 AB124113 Streptomyces sp. 322E12 prokMSA_id:095485 AB124116 Streptomyces sp. 322F03 prokMSA_id:096465 AB124122 Streptomyces sp. 322F11 prokMSA_id:096878 AB124127 Streptomyces sp. 322G06 prokMSA_id:096606 AB124131 Streptomyces sp. 322G10 prokMSA_id:096623 AB124132 Streptomyces sp. 322H03 prokMSA_id:096412 AB124134 Streptomyces sp. 322H06 prokMSA_id:098015 AB124136 Streptomyces sp. 322H10 prokMSA_id:098406 AB124138 Streptomyces sp. 331A04 prokMSA_id:097613 AB124144 Streptomyces sp. 331A11 prokMSA_id:095712 AB124152 Streptomyces sp. 331B09 prokMSA_id:096592 AB124163 Streptomyces sp. 331C08 prokMSA_id:095716 AB124164 Streptomyces sp. 331C09 prokMSA_id:096694 AB124166 Streptomyces sp. 331C11 prokMSA_id:095443 AB124169 Streptomyces sp. 331D03 prokMSA_id:095427 AB124176 Streptomyces sp. 331D11 prokMSA_id:095807 AB124183 Streptomyces sp. 331E06 prokMSA_id:098778 AB124195 Streptomyces sp. 331F06 prokMSA_id:098739 AB124205 Kitasatospora sp. 331G05 prokMSA_id:096924 AB124208 Streptomyces sp. 331G08 prokMSA_id:096004 AB124209 Streptomyces sp. 331G09 prokMSA_id:096122 AB124214 Streptomyces sp. 331H03 prokMSA_id:096863 AB124217 Kitasatospora sp. 331H06 prokMSA_id:095366 AB124218 Streptomyces sp. 331H07 prokMSA_id:098416 AB124219 Streptomyces sp. 331H08 prokMSA_id:097535 AB124222 Streptomyces sp. 331H12 prokMSA_id:096199 AB124226 Streptomyces sp. 334A09 prokMSA_id:097934 AB124227 Streptomyces sp. 334A11 prokMSA_id:096599 AB124232 Streptomyces sp. 334B04 prokMSA_id:095827 AB124244 Streptomyces sp. 334C06 prokMSA_id:098696 AB124254 Streptomyces sp. 334D06 prokMSA_id:098678 AB124256 Streptomyces sp. 334D08 prokMSA_id:096758 AB124258 Streptomyces sp. 334D10 prokMSA_id:097097 AB124263 Streptomyces sp. 334E03 prokMSA_id:096161 AB124270 Streptomyces sp. 334F01 prokMSA_id:096175 AB124282 Streptomyces sp. 334G03 prokMSA_id:095418 AB124283 Streptomyces sp. 334G04 prokMSA_id:098581 AB124284 Streptomyces sp. 334G05 prokMSA_id:098843 AB124285 Streptomyces sp. 334G06 prokMSA_id:096331 AB124287 Streptomyces sp. 334G08 prokMSA_id:096028 AB124294 Streptomyces sp. 334H03 prokMSA_id:096403 AB124300 Streptomyces sp. 334H09 prokMSA_id:098574 AB124306 Streptomyces sp. 337A05 prokMSA_id:095636 AB124307 Streptomyces sp. 337A08 prokMSA_id:098846 AB124308 Streptomyces sp. 337A09 prokMSA_id:097915 AB124309 Streptomyces sp. 337A10 prokMSA_id:098178 AB124312 Streptomyces sp. 337B01 prokMSA_id:098116 AB124316 Streptomyces sp. 337B05 prokMSA_id:097275 AB124317 Streptomyces sp. 337B06 prokMSA_id:095409 AB124318 Streptomyces sp. 337B07 prokMSA_id:095666 AB124322 Streptomyces sp. 337B11 prokMSA_id:097927 AB124323 Kitasatospora sp. 337B12 prokMSA_id:096503 AB124329 Streptomyces sp. 337C06 prokMSA_id:098283 AB124330 Kitasatospora sp. 337C08 prokMSA_id:098798 AB124333 Kitasatospora sp. 337C11 prokMSA_id:096516 AB124334 Kitasatospora sp. 337C12 prokMSA_id:096819 AB124335 Streptomyces sp. 337D01 prokMSA_id:095728 AB124337 Streptomyces sp. 337D03 prokMSA_id:098353 AB124339 Streptomyces sp. 337D05 prokMSA_id:096986 AB124342 Streptomyces sp. 337D08 prokMSA_id:097416 AB124348 Kitasatospora sp. 337E02 prokMSA_id:097926 AB124352 Streptomyces sp. 337E07 prokMSA_id:096293 AB124355 Streptomyces sp. 337E10 prokMSA_id:097731 AB124359 Streptomyces sp. 337F02 prokMSA_id:095690 AB124363 Streptomyces sp. 337F06 prokMSA_id:095226 AB124365 Streptomyces sp. 337F08 prokMSA_id:095645 AB124369 Streptomyces sp. 337F12 prokMSA_id:095733 AB124372 Streptomyces sp. 337G03 prokMSA_id:097456 AB124377 Streptomyces sp. 337G09 prokMSA_id:096237 AB124383 Streptomyces sp. 337H05 prokMSA_id:096181 AB124390 Streptomyces sp. 340A04 prokMSA_id:097862 AB124394 Streptomyces sp. 340A08 prokMSA_id:097533 AB124396 Streptomyces sp. 340A10 prokMSA_id:098691 AB124400 Kitasatospora sp. 340B03 prokMSA_id:097332 AB124402 Streptomyces sp. 340B05 prokMSA_id:098403 AB124404 Streptomyces sp. 340B07 prokMSA_id:097178 AB124408 Streptomyces sp. 340B12 prokMSA_id:097925 AB124426 Streptomyces sp. 340D08 prokMSA_id:095656 AB124427 Streptomyces sp. 340D09 prokMSA_id:098097 AB124428 Streptomyces sp. 340D10 prokMSA_id:097197 AB124429 Streptomyces sp. 340D11 prokMSA_id:097493 AB124430 Streptomyces sp. 340D12 prokMSA_id:097884 AB124431 Streptomyces sp. 340E01 prokMSA_id:097748 AB124434 Streptomyces sp. 340E04 prokMSA_id:096162 AB124435 Streptomyces sp. 340E06 prokMSA_id:095332 AB124436 Streptomyces sp. 340E07 prokMSA_id:095776 AB124437 Streptomyces sp. 340E09 prokMSA_id:098623 AB124438 Streptomyces sp. 340E10 prokMSA_id:095423 AB124440 Streptomyces sp. 340F01 prokMSA_id:097904 AB124441 Streptomyces sp. 340F02 prokMSA_id:098546 AB124442 Streptomyces sp. 340F03 prokMSA_id:095471 AB124443 Streptomyces sp. 340F04 prokMSA_id:098358 AB124444 Streptomyces sp. 340F05 prokMSA_id:095794 AB124446 Streptomyces sp. 340F07 prokMSA_id:095622 AB124448 Streptomyces sp. 340F11 prokMSA_id:097973 AB124449 Streptomyces sp. 340F12 prokMSA_id:097448 AB124451 Streptomyces sp. 340G02 prokMSA_id:097109 AB124452 Streptomyces sp. 340G03 prokMSA_id:095245 AB124453 Streptomyces sp. 340G04 prokMSA_id:096335 AB124456 Streptomyces sp. 340G07 prokMSA_id:095450 AB124457 Streptomyces sp. 340G08 prokMSA_id:097722 AB124458 Streptomyces sp. 340G09 prokMSA_id:097411 AB124460 Streptomyces sp. 340G11 prokMSA_id:095478 AB124462 Streptomyces sp. 340H01 prokMSA_id:098729 AB124463 Streptomyces sp. 340H02 prokMSA_id:097429 AB124465 Streptomyces sp. 340H04 prokMSA_id:098180 AB124466 Streptomyces sp. 340H05 prokMSA_id:097350 AB124469 Streptomyces sp. 340H10 prokMSA_id:095506 AB124470 Streptomyces sp. 340H11 prokMSA_id:097010 AB124472 Streptomyces sp. 343A04 prokMSA_id:096222 AB124478 Streptomyces sp. 343A11 prokMSA_id:098713 AB124479 Streptomyces sp. 343A12 prokMSA_id:095845 AB124482 Streptomyces sp. 343B04 prokMSA_id:098085 AB124489 Streptomyces sp. 343B11 prokMSA_id:097037 AB124491 Streptomyces sp. 343C01 prokMSA_id:098322 AB124492 Streptomyces sp. 343C02 prokMSA_id:095704 AB124494 Streptomyces sp. 343C04 prokMSA_id:098190 AB124496 Streptomyces sp. 343C06 prokMSA_id:097552 AB124497 Streptomyces sp. 343C07 prokMSA_id:095936 AB124498 Streptomyces sp. 343C08 prokMSA_id:097452 AB124499 Streptomyces sp. 343C09 prokMSA_id:095241 AB124501 Streptomyces sp. 343C11 prokMSA_id:097565 AB124503 Streptomyces sp. 343D01 prokMSA_id:095673 AB124506 Streptomyces sp. 343D04 prokMSA_id:097730 AB124509 Streptomyces sp. 343D07 prokMSA_id:096661 AB124513 Streptomyces sp. 343D12 prokMSA_id:095696 AB124515 Streptomyces sp. 343E03 prokMSA_id:098701 AB124517 Streptomyces sp. 343E05 prokMSA_id:098629 AB124519 Streptomyces sp. 343E07 prokMSA_id:096861 AB124522 Streptomyces sp. 343E11 prokMSA_id:095684 AB124523 Streptomyces sp. 343E12 prokMSA_id:098642 AB124529 Streptomyces sp. 343F06 prokMSA_id:096544 AB124532 Streptomyces sp. 343F09 prokMSA_id:097145 AB124547 Streptomyces sp. 343H07 prokMSA_id:098485 AB124548 Streptomyces sp. 343H08 prokMSA_id:097822 AB124550 Streptomyces sp. 343H10 prokMSA_id:097616 AB124551 Streptomyces sp. 343H11 prokMSA_id:028605 AF038636 Streptomyces sp. ISP5078 prokMSA_id:043193 AF038638 Streptomyces sp. ATCC3352 prokMSA_id:070373 AF038642 Streptomyces sp. ATCC15485 prokMSA_id:011799 AF056711 Streptomyces griseus subsp. griseus ATCC 23345 . prokMSA_id:023783 AF083612 Amazonian soil P9 prokMSA_id:045643 AF091225 Streptomyces sp. ATCC 3352 prokMSA_id:037831 AF091228 Streptomyces sp. ATCC 15485 prokMSA_id:048818 AF091229 Streptomyces sp. ATCC 23962 prokMSA_id:034306 AF112161 Streptomyces sp. EF-31 prokMSA_id:027052 AF112162 Streptomyces sp. EF-41 prokMSA_id:034939 AF112163 Streptomyces sp. EF-69 prokMSA_id:034172 AF112164 Streptomyces sp. 1-23 prokMSA_id:027563 AF112177 Streptomyces sp. OB-23 prokMSA_id:045139 AF112178 Streptomyces sp. OB-33 prokMSA_id:052389 AF240132 Grassland soil TSA-4 prokMSA_id:039495 AF240135 Grassland soil TSA-9 prokMSA_id:027929 AF240146 Grassland soil TSA-21 prokMSA_id:039618 AF318044 Streptomyces fulvoviridis prokMSA_id:023464 AF332183 Streptomyces griseus prokMSA_id:049578 AF393456 A22 prokMSA_id:027648 AF393457 A25 prokMSA_id:070508 AF393461 A31 prokMSA_id:032748 AF393465 A40 prokMSA_id:027389 AF417595 Streptomyces griseus prokMSA_id:018814 AF417596 Streptomyces jumonjinensis prokMSA_id:076715 AF431554 actinobacterium clone C47.25PG prokMSA_id:070782 AF516278 Streptomyces sp. LS177 prokMSA_id:070819 AF516279 Streptomyces sp. LS182 prokMSA_id:070872 AF516281 Streptomyces sp. LS166 prokMSA_id:057957 AF544294 actinobacterium isolate T06 prokMSA_id:057948 AF544306 actinobacterium isolate T59 prokMSA_id:057919 AF544343 actinobacterium isolate D06 prokMSA_id:057912 AF544353 actinobacterium isolate D35 prokMSA_id:050661 AJ132625 Streptomyces griseus isolate HKI352-16 prokMSA_id:048774 AJ132626 Streptomyces griseus isolate HKI352-165 prokMSA_id:047821 AJ132627 Streptomyces griseus isolate HKI352-1 prokMSA_id:043310 AJ132629 Streptomyces griseus isolate IMET4023 prokMSA_id:041823 AJ132630 Streptomyces globisporus isolate 1912 prokMSA_id:025468 AJ132631 Streptomyces griseus isolate N2-3-11 prokMSA_id:051237 AJ132632 Streptomyces griseus isolate JA3933 prokMSA_id:037852 AJ295386 Rape rhizosphere M9012 prokMSA_id:043516 AJ344118 clone A-11 prokMSA_id:049940 AJ344122 clone A-45 prokMSA_id:035455 AJ344125 clone A-116 prokMSA_id:027959 AJ344126 clone B-142 prokMSA_id:039713 AJ344127 clone B-153 prokMSA_id:035490 AJ344131 clone B-163 prokMSA_id:071302 AJ344132 clone B-164 prokMSA_id:042430 AJ421134 clone C13-K17 prokMSA_id:060113 AJ427653 actinomycete clone ACT-C3 prokMSA_id:060092 AJ427675 actinomycete clone STM-C8 prokMSA_id:056390 AJ427681 actinomycete clone STM-A6 prokMSA_id:033849 AJ438274 streptomycete clone K-177 prokMSA_id:042428 AJ438286 streptomycete clone S-206 prokMSA_id:035846 AJ438287 streptomycete clone S-207 prokMSA_id:082528 AJ555878 Streptomyces sp. B342 isolate B342 prokMSA_id:086445 AJ555881 Streptomyces sp. B345 isolate B345 prokMSA_id:086179 AJ555882 Streptomyces sp. B346 isolate B346 prokMSA_id:083281 AJ555883 Streptomyces sp. B347 isolate B347 prokMSA_id:085036 AJ555884 Streptomyces sp. B348 isolate B348 prokMSA_id:085466 AJ555886 Streptomyces sp. B350 isolate B350 prokMSA_id:086017 AJ555887 Streptomyces sp. B351 isolate B351 prokMSA_id:085583 AJ555889 Streptomyces sp. B354 isolate B354 prokMSA_id:085172 AJ555890 Streptomyces sp. B357 isolate B357 prokMSA_id:083951 AJ555891 Streptomyces sp. B358 isolate B358 prokMSA_id:084200 AJ555892 Streptomyces sp. B359 isolate B359 prokMSA_id:097209 AJ574917 Streptomyces sp. BC583 clone BC583 prokMSA_id:098707 AJ574922 Streptomyces sp. BC592 clone BC592 prokMSA_id:097341 AJ574928 Streptomyces sp. BC599 clone BC599 prokMSA_id:020498 AY028324 Streptomyces sp. ES14 prokMSA_id:024030 AY039469 Earthworm cast NC6 prokMSA_id:037524 AY039471 Earthworm cast NC8 prokMSA_id:027436 AY039484 Soil S32D1 prokMSA_id:061619 AY043570 Streptomyces sp. 3S2.C7 prokMSA_id:056274 AY043600 Forest soil 1S2.C12 prokMSA_id:061599 AY043601 Forest soil 5S2.F8 prokMSA_id:061598 AY043602 Forest soil 4S2.A7 prokMSA_id:066843 AY096171 clone F2-39 prokMSA_id:066061 AY114124 Streptomyces sp. AR 5 prokMSA_id:066060 AY114125 Streptomyces sp. CR 14 prokMSA_id:066057 AY114127 Streptomyces sp. CR 13 prokMSA_id:066055 AY114129 Streptomyces sp. CW 20 prokMSA_id:066054 AY114130 Streptomyces sp. CW 13 prokMSA_id:066053 AY114131 Streptomyces sp. CW 18 prokMSA_id:066051 AY114133 Streptomyces sp. DW 12 prokMSA_id:056066 AY118113 Streptomyces sp. SL1 prokMSA_id:062315 AY124395 actinobacterium clone ASb10 prokMSA_id:071459 AY143764 Streptomyces sp. clone Lur36 prokMSA_id:071292 AY143790 Streptomyces sp. clone Vr81 prokMSA_id:069867 AY144122 Streptomyces sp. clone P6 prokMSA_id:075594 AY148072 Streptomyces sp. EN16 prokMSA_id:076268 AY148075 Streptomyces sp. EN27 prokMSA_id:075165 AY148076 Streptomyces sp. EN28 prokMSA_id:077002 AY148086 Streptomyces sp. EN60 prokMSA_id:076823 AY148088 Streptomyces sp. SE1 prokMSA_id:077193 AY148089 Streptomyces sp. SE2 prokMSA_id:085351 AY217500 Actinobacterium WCIF4 prokMSA_id:082478 AY222322 Streptomyces rosealbus prokMSA_id:096266 AY262293 Streptomyces sp. E7 prokMSA_id:097978 AY262298 Streptomyces griseus clone E3 prokMSA_id:087520 AY277375 Streptomyces sp. LK2-12 prokMSA_id:087264 AY277378 Streptomyces sp. LK4-24 prokMSA_id:086849 AY277379 Streptomyces sp. LK10-3 prokMSA_id:086854 AY277380 Streptomyces sp. DL93 prokMSA_id:086836 AY277381 Streptomyces sp. LK4-20 prokMSA_id:087440 AY277382 Streptomyces sp. LK4-21 prokMSA_id:087288 AY277384 Streptomyces sp. LK6-14 prokMSA_id:011809 D85106 Streptomyces lavendulae subsp. lavendulae IFO 3125. prokMSA_id:011758 D85107 Streptomyces lavendulae subsp. lavendulae IFO 3145. prokMSA_id:011759 D85109 Streptomyces lavendulae subsp. lavendulae IFO 12340. prokMSA_id:011782 D85110 Streptomyces lavendulae subsp. lavendulae IFO 12341. prokMSA_id:011810 D85111 Streptomyces lavendulae subsp. lavendulae IFO 12343. prokMSA_id:011812 D85113 Streptomyces lavendulae subsp. lavendulae IFO 13710. prokMSA_id:011813 D85114 Streptomyces lavendulae subsp. fuscus IFO 14028. prokMSA_id:011760 D85115 Streptomyces lavendulae subsp. lavendulae IFO 13709. prokMSA_id:011775 D85116 Streptomyces lavendulae subsp. lavendulae IFO 12789 . prokMSA_id:011818 D85117 Streptomyces virginiae subsp. lipoxae JCM 4974. prokMSA_id:011761 D85118 Streptomyces virginiae IFO 3392. prokMSA_id:011814 D85121 Streptomyces virginiae ATCC 13161. prokMSA_id:011819 D85122 Streptomyces virginiae ATCC 15894. prokMSA_id:011817 D85123 Streptomyces virginiae IFO 12827 . prokMSA_id:011763 M55220 Kitasatospora setae DSM 43861 . prokMSA_id:011820 M55221 Kitasatospora griseola str. AM-9660 DSM 43859 . prokMSA_id:011803 M55223 Kitasatospora phosalacinea str. KA-338 DSM 43860 . prokMSA_id:011822 X86652 Streptomyces sp. str. 05-46. prokMSA_id:034925 Y17513 Streptomyces griseus strain 8/ppi prokMSA_id:048005 Y17514 Streptomyces griseus strain 10/ppi prokMSA_id:045231 Y17516 Streptomyces griseus strain 157 2.30.1.8.1.4 STM.BIKINIENSIS_SUBGROUP 22 seqs 2.30.1.8.1.4.001 OTU 1 seq prokMSA_id:011833 AF184082 Streptomyces sp. A36 2.30.1.8.1.4.002 OTU 11 seqs prokMSA_id:034014 AB045861 Streptomyces lipmanii prokMSA_id:025502 AF131558 Streptomyces sp. IM-7159 prokMSA_id:031376 AF131563 Streptomyces sp. IM-7175 prokMSA_id:052476 AF131583 Streptomyces sp. IM-7307 prokMSA_id:022704 AF331829 Streptomyces sp. R22 prokMSA_id:093153 AF534565 Streptomyces sp. LS143 prokMSA_id:092143 AF534566 Streptomyces sp. LS153 prokMSA_id:050889 AJ399475 Streptomyces longisporus strain ISP 5166 prokMSA_id:027046 AY043395 Streptomyces sp. KJ-72 complete prokMSA_id:077149 AY148087 Streptomyces sp. EN9 prokMSA_id:011832 X79851 Streptomyces bikiniensis DSM 40581 . 2.30.1.8.1.4.003 OTU 1 seq prokMSA_id:040593 AF423208 soil clone 1056-2 2.30.1.8.1.4.999 poor quality 9 seqs prokMSA_id:097757 AB122739 Streptomyces roseosporus prokMSA_id:098040 AB122741 Streptomyces filamentosus prokMSA_id:098832 AB122744 Streptomyces cinereoruber subsp. cinereoruber prokMSA_id:095384 AB122762 Streptomyces cuspidosporus prokMSA_id:097866 AB122777 Streptomyces olivaceus prokMSA_id:097270 AB123902 Streptomyces sp. 313H03 prokMSA_id:016473 AF234138 #0319-7E12 prokMSA_id:057975 AF544275 actinobacterium isolate T52 prokMSA_id:055413 AY124397 actinobacterium clone ASc02 2.30.1.8.1.5 STM.CINNAMONEUS_SUBGROUP 6 seqs 2.30.1.8.1.5.999 poor quality 6 seqs prokMSA_id:039399 AJ413600 Streptomyces sp. dtb1 strain dtb1 prokMSA_id:011834 D26262 soil from soybean field clone FIE10. prokMSA_id:011838 X53164 Streptomyces roseoverticillatus DPDU 0819 . prokMSA_id:011837 X53165 Streptomyces cinnamoneus subsp. azacolutus DPDU 0074 . prokMSA_id:011836 X53166 Streptomyces olivoreticuli subsp. cellulophilus DPDU 0278 . prokMSA_id:011835 X53171 Streptomyces cinnamoneus subsp. cinnamoneus DPDU 0093 . 2.30.1.8.1.6 STM.SALMONIS 1 seq 2.30.1.8.1.6.001 OTU 1 seq prokMSA_id:011839 X53169 Streptomyces salmonis DPDU 00098 . 2.30.1.8.1.7 STM.ABIKOENSIS 1 seq 2.30.1.8.1.7.999 poor quality 1 seq prokMSA_id:011840 X53168 Streptomyces abikoensis DSM 40831 . 2.30.1.8.1.8 STM.ARMENIACUS_SUBGROUP 147 seqs 2.30.1.8.1.8.002 OTU 1 seq prokMSA_id:011852 AF101415 Streptomyces CN732 str. CN 732. 2.30.1.8.1.8.005 OTU 1 seq prokMSA_id:011848 X87316 str. SR 257. 2.30.1.8.1.8.010 OTU 3 seqs prokMSA_id:011843 AB018092 Streptomyces armeniacus JCM 3070 . prokMSA_id:011842 AB018093 Streptomyces armeniacus JCM 3070 . prokMSA_id:011841 AB018094 Streptomyces armeniacus JCM 3070 . 2.30.1.8.1.8.011 OTU 1 seq prokMSA_id:019464 AJ229209 from anoxic bulk soil clone BSV58 2.30.1.8.1.8.012 OTU 1 seq prokMSA_id:023521 AY040614 Streptomyces sp. F50970 2.30.1.8.1.8.014 OTU 55 seqs prokMSA_id:011855 AB024440 Streptomyces albulus str. IMC S-0802 ISP 5492. prokMSA_id:011856 AB024441 Streptomyces kasugaensis str. M338-M1. prokMSA_id:011857 AB024442 Streptomyces kasugaensis str. MB273-C4. prokMSA_id:011858 AB024443 Streptomyces albulus str. MF861-C4. prokMSA_id:051375 AB045880 Streptomyces albofaciens prokMSA_id:042935 AB045882 Streptomyces platensis prokMSA_id:052271 AB045883 Streptomyces rimosus subsp. rimosus prokMSA_id:011847 AF117304 Streptomyces malaysiensis str. ATB-11. prokMSA_id:035072 AF131503 Streptomyces sp. IM-0885 prokMSA_id:028082 AF131509 Streptomyces sp. IM-2504 prokMSA_id:050917 AF131510 Streptomyces sp. IM-3959 prokMSA_id:050511 AF131512 Streptomyces sp. IM-6438 prokMSA_id:033739 AF131522 Streptomyces sp. IM-6866 prokMSA_id:033374 AF131526 Streptomyces sp. IM-6885 prokMSA_id:071296 AF131527 Streptomyces sp. IM-6886 prokMSA_id:072011 AF131528 Streptomyces sp. IM-6887 prokMSA_id:074680 AF131546 Streptomyces sp. IM-7034 prokMSA_id:027781 AF131554 Streptomyces sp. IM-7140 prokMSA_id:018387 AF131579 Streptomyces sp. IM-7256 prokMSA_id:037048 AF131582 Streptomyces sp. IM-7292 prokMSA_id:028078 AF131602 Streptomyces sp. IM-7556 prokMSA_id:017895 AF336800 Streptomyces yatensis prokMSA_id:023870 AF346818 Streptomyces yunnanensis prokMSA_id:065595 AF513222 Streptomyces albogriseus prokMSA_id:037438 AJ007399 Streptomyces somaliensis strain DSM 40760 prokMSA_id:046620 AJ271887 Streptomyces melanosporofaciens strain NRRL B-12234T prokMSA_id:043737 AJ391812 Streptomyces sp. NRRL B-1356 prokMSA_id:040872 AJ391816 Streptomyces sp. NRRL 8097 prokMSA_id:019021 AJ391818 Streptomyces sp. NRRL B-1865 prokMSA_id:047677 AJ391819 Streptomyces hygroscopicus strain NRRL B-1477 prokMSA_id:049805 AJ391820 Streptomyces hygroscopicus strain NRRL 2387T prokMSA_id:039533 AJ391822 Streptomyces violaceusniger strain NRRL B-1476T prokMSA_id:024293 AJ391823 Streptomyces violaceusniger strain NRRL-ISP 5563T prokMSA_id:037355 AJ391824 Streptomyces geldanus strain NRRL 3602T prokMSA_id:043665 AJ391825 Streptomyces sp. B23P1 S1 prokMSA_id:029997 AJ391826 Streptomyces sp. D6R1 S2 prokMSA_id:042266 AJ391827 Streptomyces sp. C4R3 S3 prokMSA_id:036466 AJ391828 Streptomyces sp. C9P3 S4 prokMSA_id:023819 AJ391829 Streptomyces sp. A23R2 S6 prokMSA_id:024056 AJ391831 Streptomyces sp. D13P3 S23 prokMSA_id:048254 AJ391832 Streptomyces sp. A33R1 S24 prokMSA_id:042859 AJ391833 Streptomyces sp. B22P3 S26 prokMSA_id:032226 AJ391834 Streptomyces sp. A10P1 S27 prokMSA_id:020194 AJ391836 Streptomyces sp. B13P3 S35 prokMSA_id:043242 AJ391837 Streptomyces melanosporofaciens strain NRRL B-12234T prokMSA_id:075213 AJ519937 Streptomyces sp. GE 90930 strain GE 90930 prokMSA_id:083902 AJ560629 Streptomyces cibimarensis strain DSM 41798T prokMSA_id:077446 AY167807 Streptomyces platensis strain SAFN-030 prokMSA_id:088883 AY314785 Streptomyces sp. FXJ23 prokMSA_id:094790 AY376166 Streptomyces halotolerans strain YIM 90017 prokMSA_id:073438 X62884 Streptomyces rimosus 23S and 5S genes prokMSA_id:011845 X62884 Streptomyces rimosus =rrnF . prokMSA_id:011846 X81573 Amycolatopsis orientalis subsp. lurida DSM 43187. prokMSA_id:011849 X99943 Streptomyces griseocarneus DSM 40004. prokMSA_id:011853 Y15507 Streptomyces lydicus str. D-45 ATCC 25470 . 2.30.1.8.1.8.015 OTU 1 seq prokMSA_id:027478 AF131518 Streptomyces sp. IM-6840 2.30.1.8.1.8.016 OTU 1 seq prokMSA_id:030701 AB045871 Streptomyces cattleya 2.30.1.8.1.8.017 OTU 1 seq prokMSA_id:032976 AF131536 Streptomyces sp. IM-6960 2.30.1.8.1.8.018 OTU 1 seq prokMSA_id:036636 AF131577 Streptomyces sp. IM-7248 2.30.1.8.1.8.019 OTU 1 seq prokMSA_id:046451 AF345862 Streptomyces sp. KACC 20159 2.30.1.8.1.8.020 OTU 1 seq prokMSA_id:070381 AF131529 Streptomyces sp. IM-6899 2.30.1.8.1.8.021 OTU 1 seq prokMSA_id:090545 AY331685 Streptomyces alkalophilus 2.30.1.8.1.8.022 OTU 1 seq prokMSA_id:096357 AY382292 Streptomyces sp. AA-98 2.30.1.8.1.8.999 poor quality 77 seqs prokMSA_id:039373 AB054911 Streptomyces sp. 1267 prokMSA_id:017150 AB073623 Streptomyces hygroscopicus strain:SMUM3697 prokMSA_id:096835 AB122716 Streptomyces clavuligerus prokMSA_id:098694 AB122726 Streptomyces libani subsp. libani prokMSA_id:096315 AB122735 Streptomyces orinoci prokMSA_id:096787 AB122743 Streptomyces sioyaensis prokMSA_id:095541 AB122745 Streptomyces platensis prokMSA_id:095786 AB122748 Streptomyces catenulae prokMSA_id:097432 AB122752 Streptomyces antimycoticus prokMSA_id:096041 AB122753 Streptomyces hygroscopicus subsp. decoyicus prokMSA_id:097276 AB122754 Streptomyces hygroscopicus subsp. glebosus prokMSA_id:098320 AB122760 Streptomyces libani subsp. rufus prokMSA_id:098168 AB122771 Streptomyces cacaoi subsp. cacaoi prokMSA_id:095687 AB122772 Streptomyces flocculus prokMSA_id:097106 AB122784 Streptomyces sp. 384A06 prokMSA_id:098590 AB122828 Streptomyces sp. 384E09 prokMSA_id:097155 AB123500 Streptomyces sp. 431H12 prokMSA_id:098259 AB123510 Streptomyces sp. 434B03 prokMSA_id:095783 AB123529 Streptomyces sp. 434D09 prokMSA_id:097045 AB123558 Streptomyces sp. 434G09 prokMSA_id:095526 AB123559 Streptomyces sp. 434G10 prokMSA_id:097206 AB123576 Streptomyces sp. 303A09 prokMSA_id:095640 AB123594 Streptomyces sp. 303C03 prokMSA_id:096469 AB123595 Streptomyces sp. 303C04 prokMSA_id:098083 AB123600 Streptomyces sp. 303C09 prokMSA_id:098516 AB123658 Streptomyces sp. 306A06 prokMSA_id:097043 AB123670 Streptomyces sp. 306B08 prokMSA_id:097881 AB123681 Streptomyces sp. 306C07 prokMSA_id:098497 AB123721 Streptomyces sp. 306G08 prokMSA_id:097444 AB123861 Streptomyces sp. 313D05 prokMSA_id:097408 AB124341 Streptomyces sp. 337D07 prokMSA_id:097830 AB124345 Streptomyces sp. 337D11 prokMSA_id:095872 AB124347 Streptomyces sp. 337E01 prokMSA_id:098595 AB124356 Streptomyces sp. 337E11 prokMSA_id:098818 AB124379 Streptomyces sp. 337G11 prokMSA_id:098529 AB124385 Streptomyces sp. 337H08 prokMSA_id:096467 AB124386 Streptomyces sp. 337H10 prokMSA_id:098814 AB124433 Streptomyces sp. 340E03 prokMSA_id:097920 AB124450 Streptomyces sp. 340G01 prokMSA_id:097762 AB124454 Streptomyces sp. 340G05 prokMSA_id:011851 AF056716 Streptomyces autolyticus str. JX-47. prokMSA_id:011854 AF060789 Streptomyces Z1 str. Z1. prokMSA_id:018922 AF083607 Amazonian soil P50 prokMSA_id:071259 AF283239 Uni-MO3 prokMSA_id:023086 AF388361 clone Ac56 prokMSA_id:031878 AF417594 Streptomyces cattleya prokMSA_id:046081 AF417598 Streptomyces olivaceus prokMSA_id:041524 AF417600 Streptomyces clavuligerus prokMSA_id:055492 AF544321 actinobacterium isolate M16 prokMSA_id:050810 AJ298935 Streptomyces sp. d19 strain d19 prokMSA_id:047641 AJ344119 clone B-15 prokMSA_id:035351 AJ413601 Streptomyces sp. dtb233 strain dtb233 prokMSA_id:060099 AJ427668 actinomycete clone STM-C1 prokMSA_id:073769 AJ427669 actinomycete clone STM-C2 prokMSA_id:060097 AJ427670 actinomycete clone STM-C3 prokMSA_id:060098 AJ427671 actinomycete clone STS-C4 prokMSA_id:060095 AJ427672 actinomycete clone STM-C5 prokMSA_id:060094 AJ427673 actinomycete clone STM-C6 prokMSA_id:060093 AJ427674 actinomycete clone STM-C7 prokMSA_id:060085 AJ427684 actinomycete clone STM-A9 prokMSA_id:033478 AJ438283 streptomycete clone S-113 prokMSA_id:016648 AJ438285 streptomycete clone S-197 prokMSA_id:075219 AJ517837 Streptomyces sp. KU52 strain KU52 prokMSA_id:086490 AJ555226 actinomycete clone AOF31 prokMSA_id:044070 AY028322 Streptomyces sp. ES9 prokMSA_id:045880 AY028323 Streptomyces sp. ES16 prokMSA_id:048704 AY048900 L11-6hw16 prokMSA_id:039993 AY048902 L11-6hw17 prokMSA_id:027687 AY048906 L11-DL5Bhw4 prokMSA_id:019115 AY048910 L10-22hw8-3 prokMSA_id:066063 AY114123 Streptomyces sp. AR 28 prokMSA_id:055417 AY114126 Streptomyces sp. CR 20 prokMSA_id:097890 AY262296 Streptomyces sp. E4 prokMSA_id:096206 AY262299 Streptomyces albus clone E1 prokMSA_id:087300 AY277376 Streptomyces sp. LK4-2 prokMSA_id:011850 X86651 Streptomyces sp. str. 05-35. prokMSA_id:011844 X91516 clone K1. 2.30.1.8.1.9 STM.MASHUENSIS_SUBGROUP 71 seqs 2.30.1.8.1.9.001 OTU 2 seqs prokMSA_id:076694 AY154617 earthworm cast clone c266 prokMSA_id:011866 X92699 clone TM146. 2.30.1.8.1.9.002 OTU 1 seq prokMSA_id:011864 X79323 Streptomyces mashuensis DSM 40221 . 2.30.1.8.1.9.003 OTU 1 seq prokMSA_id:011863 Z68097 Streptomyces thermolineatus DSM 41451 . 2.30.1.8.1.9.004 OTU 1 seq prokMSA_id:011862 AF027015 clone OPS17. 2.30.1.8.1.9.005 OTU 1 seq prokMSA_id:011861 Z68100 Streptomyces megasporus DSM 41476 . 2.30.1.8.1.9.006 OTU 1 seq prokMSA_id:011860 AF027018 clone OPT29. 2.30.1.8.1.9.007 OTU 1 seq prokMSA_id:011859 Z68099 Streptomyces macrosporus DSM 41449 . 2.30.1.8.1.9.008 OTU 1 seq prokMSA_id:019964 AF391982 thermal soil clone YNPFFP59 2.30.1.8.1.9.009 OTU 1 seq prokMSA_id:072508 AY039806 Earthworm burrow B33D1 2.30.1.8.1.9.010 OTU 1 seq prokMSA_id:021912 AF131604 Streptomyces sp. IM-7585 2.30.1.8.1.9.011 OTU 4 seqs prokMSA_id:026087 AF233375 Streptomyces sp. 11AG8 prokMSA_id:084823 AY236339 Streptomyces sp. YIM 80305 prokMSA_id:087210 AY299619 Streptomyces sp. YIM 80250 prokMSA_id:087471 AY299620 Streptomyces sp. YIM 80244 2.30.1.8.1.9.012 OTU 1 seq prokMSA_id:027571 AF234119 #0649-1G9 2.30.1.8.1.9.013 OTU 1 seq prokMSA_id:063773 AY114332 candidate division WS3 clone LD1-PB19 2.30.1.8.1.9.014 OTU 1 seq prokMSA_id:063785 AY114321 Verrucomicrobia clone LD1-PA32 2.30.1.8.1.9.015 OTU 1 seq prokMSA_id:066545 AY100535 clone cvf70163 2.30.1.8.1.9.016 OTU 1 seq prokMSA_id:069481 AB045870 Streptomyces cattleya 2.30.1.8.1.9.017 OTU 1 seq prokMSA_id:070355 AY129782 actinobacterium clone GCPF6 2.30.1.8.1.9.018 OTU 1 seq prokMSA_id:075252 AY154577 earthworm cast clone c219 2.30.1.8.1.9.019 OTU 1 seq prokMSA_id:075823 AY150916 Rubrobacteridae clone WYO2C 2.30.1.8.1.9.020 OTU 1 seq prokMSA_id:075965 AY154599 earthworm cast clone c244 2.30.1.8.1.9.021 OTU 1 seq prokMSA_id:076171 AY150872 Rubrobacteridae clone glen99_25 2.30.1.8.1.9.022 OTU 1 seq prokMSA_id:076235 AY150911 Rubrobacteridae clone WYO33C 2.30.1.8.1.9.023 OTU 2 seqs prokMSA_id:078720 AJ536866 clone JG30-KF-A23 prokMSA_id:093876 AJ582207 Actinobacterium clone Gitt-GS-71a 2.30.1.8.1.9.024 OTU 1 seq prokMSA_id:079924 AY192287 actinobacterium clone W3-3Hb 2.30.1.8.1.9.025 OTU 2 seqs prokMSA_id:085213 AY242763 soil clone Tc121-E06 prokMSA_id:082962 AY242764 soil clone Tc122-B08 2.30.1.8.1.9.026 OTU 1 seq prokMSA_id:083037 AY242761 soil clone Tc123-F09 2.30.1.8.1.9.027 OTU 2 seqs prokMSA_id:083492 AY242758 soil clone Tc124-C11 prokMSA_id:086109 AY242759 soil clone Tc122-D08 2.30.1.8.1.9.028 OTU 1 seq prokMSA_id:083997 AY242757 soil clone Tc135-226 2.30.1.8.1.9.029 OTU 1 seq prokMSA_id:084556 AY242754 soil clone Tc124-D11 2.30.1.8.1.9.030 OTU 2 seqs prokMSA_id:084834 AY242766 soil clone Tc122-H08 prokMSA_id:086402 AY242767 soil clone Tc119-E02 2.30.1.8.1.9.031 OTU 1 seq prokMSA_id:085476 AY242756 soil clone Tc121-F06 2.30.1.8.1.9.032 OTU 1 seq prokMSA_id:088335 AF443581 clone C-F-1 2.30.1.8.1.9.033 OTU 1 seq prokMSA_id:088360 AF443573 clone C-F-19 2.30.1.8.1.9.034 OTU 1 seq prokMSA_id:089479 AF443579 clone C-F-2 2.30.1.8.1.9.035 OTU 1 seq prokMSA_id:093602 AJ581607 Actinobacterium clone KCM-B-44 2.30.1.8.1.9.999 poor quality 28 seqs prokMSA_id:016296 AB036506 KH1-5-09 prokMSA_id:050174 AF128739 soil C010 prokMSA_id:024067 AF234135 #0319-6M6 prokMSA_id:025319 AF428773 clone CR98-5-43 prokMSA_id:033638 AF428949 clone CR98-35-67 prokMSA_id:065860 AF507467 soil clone S046 prokMSA_id:065862 AF507468 soil clone S059 prokMSA_id:065859 AF507469 soil clone S068 prokMSA_id:065857 AF507471 soil clone S073 prokMSA_id:055549 AF507554 soil clone S0240 prokMSA_id:031447 AJ292915 WR890 clone WR890 prokMSA_id:089855 AJ577314 clone 178 prokMSA_id:018354 AY037594 soil clone S066 prokMSA_id:046960 AY037739 earthworm cast clone C136 prokMSA_id:022909 AY037875 firmicute clone CD2H9 prokMSA_id:061499 AY043721 actinobacterium clone NOW2.KWL prokMSA_id:061382 AY043862 actinobacterium clone NMW3.213WL prokMSA_id:061359 AY043884 actinobacterium clone NMS8.22WL prokMSA_id:055849 AY044028 clone S9P.06WL prokMSA_id:061255 AY044046 clone S64P.17PG prokMSA_id:069576 AY143698 actinobacterium clone Lu9 prokMSA_id:073899 AY143699 actinobacterium clone Lu11 prokMSA_id:069229 AY143771 Solirubrobacter sp. clone Lur75 prokMSA_id:056261 AY143789 Rubrobacteridae clone Vr33 prokMSA_id:075698 AY154635 earthworm cast clone c290 prokMSA_id:080333 AY193072 actinobacterium clone OBPB53 prokMSA_id:011867 U68681 clone P58. prokMSA_id:011865 U72173 Streptomyces mashuensis ATCC 23934. 2.30.1.8.1.10 THERMOPHILIC_STREPTOMYCES 112 seqs 2.30.1.8.1.10.002 OTU 3 seqs prokMSA_id:011882 AB015539 str. BD2-10. prokMSA_id:011881 AF154093 clone BPC063. prokMSA_id:025901 AF424425 actinobacterium MERTZ_21CM_2 2.30.1.8.1.10.004 OTU 19 seqs prokMSA_id:011872 AB018095 Streptomyces thermodiastaticus JCM 4840 . prokMSA_id:011880 AB018096 Streptomyces thermodiastaticus JCM 4840 . prokMSA_id:046851 AF131550 Streptomyces sp. IM-7085 prokMSA_id:036096 AF333113 Streptomyces sp. AT10 prokMSA_id:044142 AF441168 Streptomyces sp. CH-M-1035 prokMSA_id:011889 AJ000284 Streptomyces thermoalcalitolerans str. TA56 DSM 41741 . prokMSA_id:011879 AJ001434 Streptomyces thermodiastaticus str. NAR 85. prokMSA_id:038018 AJ007402 Streptomyces thermocoprophilus strain B19 prokMSA_id:016836 AJ399483 Streptomyces afghaniensis strain ISP 5228 prokMSA_id:016961 AY029353 Streptomyces thermoviolaceus strain AB106 prokMSA_id:085226 AY247715 Streptomyces tendae prokMSA_id:011876 U94487 Streptomyces thermocarboxydovorans DSM 44294. prokMSA_id:011877 U94488 Streptomyces thermocarboxydovorans DSM 44295. prokMSA_id:011878 U94489 Streptomyces thermocarboxydovorans DSM 44296. prokMSA_id:011883 Z68094 Streptomyces thermovulgaris str. ISP 5444 DSM 40444 . prokMSA_id:011873 Z68095 Streptomyces thermoviolaceus subsp. apingens DSM 41392 . prokMSA_id:011870 Z68096 Streptomyces thermoviolaceus subsp. thermoviolaceus str. ISP 5443 prokMSA_id:011884 Z68098 Streptomyces thermovulgaris str. ISP 5579 DSM 40579 . prokMSA_id:011868 Z68101 Streptomyces thermodiastaticus DSM 40573 . 2.30.1.8.1.10.005 OTU 1 seq prokMSA_id:011875 X87315 str. SR 247. 2.30.1.8.1.10.006 OTU 3 seqs prokMSA_id:011874 AF060793 Streptomyces X13 str. X13. prokMSA_id:052437 AF131541 Streptomyces sp. IM-6979 prokMSA_id:027995 AF131575 Streptomyces sp. IM-7236 2.30.1.8.1.10.007 OTU 1 seq prokMSA_id:011871 X76705 Streptomyces sp. str. TB3481. 2.30.1.8.1.10.008 OTU 1 seq prokMSA_id:011869 AF146264 clone SCALE-12. 2.30.1.8.1.10.009 OTU 1 seq prokMSA_id:024170 AF424423 actinobacterium MERTZ_0CM_206 2.30.1.8.1.10.010 OTU 1 seq prokMSA_id:024466 AF142967 TAYNAYA-19 2.30.1.8.1.10.011 OTU 1 seq prokMSA_id:024961 AF328190 clone KS49 2.30.1.8.1.10.012 OTU 1 seq prokMSA_id:026571 AF142805 ACE-30 2.30.1.8.1.10.013 OTU 1 seq prokMSA_id:038349 AF424429 actinobacterium MERTZ_21CM_172 2.30.1.8.1.10.014 OTU 1 seq prokMSA_id:044460 AF419679 a2b044 2.30.1.8.1.10.015 OTU 1 seq prokMSA_id:059821 AY133368 clone BB2_192 2.30.1.8.1.10.016 OTU 1 seq prokMSA_id:067031 AJ306762 clone SHA-34 2.30.1.8.1.10.017 OTU 1 seq prokMSA_id:068935 AJ391835 Streptomyces sp. A4R2 S34 2.30.1.8.1.10.018 OTU 1 seq prokMSA_id:079332 AB099997 sequences clone: IndB1-23 2.30.1.8.1.10.019 OTU 1 seq prokMSA_id:080057 AY193208 actinobacterium clone Bol7 2.30.1.8.1.10.020 OTU 1 seq prokMSA_id:086461 AY274149 clone D144 2.30.1.8.1.10.021 OTU 1 seq prokMSA_id:088803 AY245480 ML17_DCC3 2.30.1.8.1.10.022 OTU 1 seq prokMSA_id:094651 AY373407 clone A20 complete 2.30.1.8.1.10.999 poor quality 70 seqs prokMSA_id:051812 AB031615 TIHP302-29 prokMSA_id:030304 AB054904 Streptomyces sp. 1017 prokMSA_id:097751 AB122727 Streptomyces spiralis prokMSA_id:095204 AB122731 Streptomyces chromofuscus prokMSA_id:096262 AB122732 Streptomyces durhamensis prokMSA_id:098125 AB122733 Streptomyces filipinensis prokMSA_id:096013 AB122787 Streptomyces sp. 384A10 prokMSA_id:096048 AB122857 Streptomyces sp. 387A07 prokMSA_id:095876 AB122877 Streptomyces sp. 387D08 prokMSA_id:095893 AB122879 Streptomyces sp. 387D10 prokMSA_id:097382 AB122884 Streptomyces sp. 387E03 prokMSA_id:098816 AB122886 Streptomyces sp. 387E05 prokMSA_id:097954 AB122911 Streptomyces sp. 387H01 prokMSA_id:098746 AB122930 Streptomyces sp. 410B03 prokMSA_id:096620 AB123012 Streptomyces sp. 411E12 prokMSA_id:096348 AB123161 Streptomyces sp. 415H01 prokMSA_id:096987 AB123174 Streptomyces sp. 418A05 prokMSA_id:096635 AB123179 Streptomyces sp. 418A10 prokMSA_id:095665 AB123185 Streptomyces sp. 418B05 prokMSA_id:096438 AB123188 Streptomyces sp. 418B08 prokMSA_id:098164 AB123193 Streptomyces sp. 418C01 prokMSA_id:095389 AB123387 Streptomyces sp. 428C07 prokMSA_id:097680 AB123388 Streptomyces sp. 428C08 prokMSA_id:096286 AB123390 Streptomyces sp. 428C10 prokMSA_id:097933 AB123394 Streptomyces sp. 428D05 prokMSA_id:098868 AB123396 Streptomyces sp. 428D07 prokMSA_id:097962 AB123399 Streptomyces sp. 428D10 prokMSA_id:097891 AB123401 Streptomyces sp. 428D12 prokMSA_id:096913 AB123402 Streptomyces sp. 428E01 prokMSA_id:098096 AB123403 Streptomyces sp. 428E03 prokMSA_id:095958 AB123426 Streptomyces sp. 428H04 prokMSA_id:097183 AB123428 Streptomyces sp. 428H08 prokMSA_id:096900 AB123430 Streptomyces sp. 428H10 prokMSA_id:098782 AB123431 Streptomyces sp. 428H11 prokMSA_id:097514 AB123442 Streptomyces sp. 431B05 prokMSA_id:096558 AB123444 Streptomyces sp. 431B07 prokMSA_id:097265 AB123471 Streptomyces sp. 431E02 prokMSA_id:096308 AB123518 Streptomyces sp. 434C08 prokMSA_id:096831 AB123565 Streptomyces sp. 434H04 prokMSA_id:098410 AB123786 Streptomyces sp. 310E10 prokMSA_id:096102 AB124167 Streptomyces sp. 331D01 prokMSA_id:098291 AB124296 Streptomyces sp. 334H05 prokMSA_id:097019 AB124297 Streptomyces sp. 334H06 prokMSA_id:096559 AB124381 Streptomyces sp. 337H01 prokMSA_id:096961 AB124520 Streptomyces sp. 343E08 prokMSA_id:011886 AF056712 Streptomyces thermogriseus str. Y-4027 CCTCC AA97012. prokMSA_id:011887 AF056713 Streptomyces thermogriseus str. Y-5114 CCTCC AA97013. prokMSA_id:011885 AF056714 Streptomyces thermogriseus str. Y-14046 CCTCC AA97014 . prokMSA_id:011888 AF056715 Streptomyces thermogriseus str. Y-14082 CCTCC AA97015. prokMSA_id:023324 AF083610 Amazonian soil P80 prokMSA_id:044241 AF210799 Soil CAFB-JP4-5 prokMSA_id:029615 AF317495 Streptomyces wadayamensis prokMSA_id:031907 AF332299 clone T26-11 prokMSA_id:068065 AF365682 clone BT60DS1BA6 prokMSA_id:057990 AF544254 actinobacterium isolate T11 prokMSA_id:057989 AF544256 actinobacterium isolate T02 prokMSA_id:057987 AF544259 actinobacterium isolate T03 prokMSA_id:057977 AF544272 actinobacterium isolate T47 prokMSA_id:057976 AF544273 actinobacterium isolate T49 prokMSA_id:057972 AF544278 actinobacterium isolate T60 prokMSA_id:057964 AF544287 actinobacterium isolate T23 prokMSA_id:057952 AF544297 actinobacterium isolate T05 prokMSA_id:057950 AF544305 actinobacterium isolate T57 prokMSA_id:031408 AJ344128 clone B-160 prokMSA_id:057096 AJ518440 clone Neu4P3-53 prokMSA_id:018404 AY037573 soil clone S037 prokMSA_id:061380 AY043863 actinobacterium clone NMW3.32WL prokMSA_id:066056 AY114128 Streptomyces sp. CR 5 prokMSA_id:063033 AY122316 Denitrifying VL prokMSA_id:095328 AY262297 Streptomyces somaliensis clone E2 2.30.1.8.1.11 STM.ALBIDOFLAVUS_SUBGROUP 85 seqs 2.30.1.8.1.11.001 OTU 1 seq prokMSA_id:011924 AF050572 clone WCHB1-81. 2.30.1.8.1.11.002 OTU 32 seqs prokMSA_id:074503 AB045859 Streptomyces panayensis prokMSA_id:025222 AB045866 Streptomyces griseus subsp. griseus prokMSA_id:069484 AB045867 Streptomyces griseus subsp. griseus prokMSA_id:033840 AB052845 Streptomyces sp. AP77 prokMSA_id:031593 AF131552 Streptomyces sp. IM-7125 prokMSA_id:049844 AF429393 Streptomyces sp. VTT E-99-1329 A52 prokMSA_id:024956 AF429394 Streptomyces sp. VTT E-99-1330 A83 prokMSA_id:020295 AF429400 Streptomyces sp. VTT E-99-1336 B329 prokMSA_id:026614 AJ007400 Streptomyces somaliensis strain DSM 40267 prokMSA_id:048414 AJ391814 Streptomyces sp. NRRL 5799 prokMSA_id:052286 AJ399472 Streptomyces sp. strain ISP 5133 prokMSA_id:039888 AJ399473 Streptomyces coeruleofuscus strain ISP 5144 prokMSA_id:074668 AJ399491 Streptomyces sp. strain ISP 5499 prokMSA_id:019795 AJ399494 Streptomyces sp. strain ISP 5592 prokMSA_id:033034 AY029697 Streptomyces sp. KN-0260 prokMSA_id:081466 AY079156 Streptomyces sp. VK-A60 prokMSA_id:082694 AY222323 Streptomyces plemorphus prokMSA_id:011917 D63871 Streptomyces sampsonii ATCC 25495 . prokMSA_id:049146 Y15503 Streptomyces sp. strain ATCC10246 prokMSA_id:011890 Z76676 Streptomyces albidoflavus DSM 40455 . prokMSA_id:011892 Z76677 Streptomyces albidoflavus DSM 40792. prokMSA_id:011916 Z76678 Streptomyces coelicolor DSM 40233 . prokMSA_id:011914 Z76679 Streptomyces limosus DSM 40131 . prokMSA_id:011913 Z76680 Streptomyces sampsonii DSM 40394 . prokMSA_id:011915 Z76681 Streptomyces felleus DSM 40130 . prokMSA_id:011912 Z76682 Streptomyces odorifer DSM 40347 . prokMSA_id:011893 Z76683 Streptomyces albidoflavus DSM 40880. prokMSA_id:011891 Z76684 Streptomyces canescens DSM 40001 . prokMSA_id:011894 Z76685 Streptomyces albidoflavus DSM 46452. prokMSA_id:011921 Z76686 Streptomyces intermedius DSM 40372 . prokMSA_id:011923 Z76687 Streptomyces gougerotii DSM 40324 . prokMSA_id:011919 Z76688 Streptomyces rutgersensis subsp. rutgersensis DSM 40077 . 2.30.1.8.1.11.003 OTU 1 seq prokMSA_id:011922 AF114034 Streptomyces nodosus ATCC 14899. 2.30.1.8.1.11.004 OTU 1 seq prokMSA_id:011920 X76702 Streptomyces sp. str. D921. 2.30.1.8.1.11.005 OTU 1 seq prokMSA_id:011918 X53161 Streptomyces diastaticus subsp. diastaticus DSM 40496 . 2.30.1.8.1.11.006 OTU 1 seq prokMSA_id:033908 AF131576 Streptomyces sp. IM-7239 2.30.1.8.1.11.007 OTU 1 seq prokMSA_id:050283 AY053493 At425_EubF1 2.30.1.8.1.11.008 OTU 1 seq prokMSA_id:080391 AB094955 clone:OHKB16.29 2.30.1.8.1.11.009 OTU 1 seq prokMSA_id:090342 AY314783 Streptomyces sp. FXJ46 2.30.1.8.1.11.010 OTU 1 seq prokMSA_id:093417 AY370677 Streptomyces roseoflavus strain Men-myco-93-63 2.30.1.8.1.11.011 OTU 1 seq prokMSA_id:097060 AJ536836 clone 122 2.30.1.8.1.11.999 poor quality 43 seqs prokMSA_id:097528 AB123074 Streptomyces sp. 413F03 prokMSA_id:097159 AB123378 Streptomyces sp. 428B09 prokMSA_id:029756 AF038634 Streptomyces sp. ATCC10246 prokMSA_id:040527 AF038640 Streptomyces sp. 8.2 prokMSA_id:049306 AF038641 Streptomyces sp. 8.16 prokMSA_id:031097 AF038647 Streptomyces sp. ISS prokMSA_id:032085 AF083564 Amazonian soil M1bc prokMSA_id:047142 AF091219 Streptomyces sp. 8.2 prokMSA_id:021867 AF091220 Streptomyces sp. 8.16 prokMSA_id:042017 AF091222 Streptomyces sp. ISS prokMSA_id:043894 AF091227 Streptomyces sp. ATCC 10246 prokMSA_id:049808 AF112176 Streptomyces sp. EF-100 prokMSA_id:037713 AJ290985 SHE-139 prokMSA_id:074783 AJ296626 GR-WP-54-8 clone GR-WP-54-8 prokMSA_id:073390 AJ344129 clone B-161 prokMSA_id:060090 AJ427677 actinomycete clone STM-A2 prokMSA_id:035190 AJ438273 streptomycete clone K-171 prokMSA_id:078787 AJ536444 Streptomyces somaliensis isolate 9:3 588BP prokMSA_id:079011 AJ536445 Streptomyces somaliensis isolate 9:3 567BP prokMSA_id:085100 AJ555888 Streptomyces sp. B352 isolate B352 prokMSA_id:096385 AJ574921 Streptomyces sp. BC590 clone BC590 prokMSA_id:097633 AJ574923 Streptomyces sp. BC594 clone BC594 prokMSA_id:096143 AJ574926 Streptomyces sp. BC597 clone BC597 prokMSA_id:055678 AY114122 Streptomyces sp. AR 22 prokMSA_id:066052 AY114132 Streptomyces sp. DW 32 prokMSA_id:028996 Y17517 Streptomyces albidoflavus strain 703 prokMSA_id:011895 Z76689 Streptomyces albus DSM 40890. prokMSA_id:011896 Z76690 Streptomyces cellulosae DSM 40802. prokMSA_id:011897 Z76691 Streptomyces coelicolor DSM 40624. prokMSA_id:011898 Z76692 Streptomyces coelicolor DSM 40665. prokMSA_id:011899 Z76693 Streptomyces coelicolor DSM 40674. prokMSA_id:011900 Z76694 Streptomyces coelicolor DSM 40675. prokMSA_id:011901 Z76695 Streptomyces coelicolor DSM 40678. prokMSA_id:011902 Z76696 Streptomyces coelicolor DSM 40679. prokMSA_id:011903 Z76697 Streptomyces coelicolor DSM 40681. prokMSA_id:011904 Z76698 Streptomyces coelicolor DSM 40682. prokMSA_id:011905 Z76699 Streptomyces coelicolor DSM 40683. prokMSA_id:011906 Z76700 Streptomyces griseus DSM 40882. prokMSA_id:011907 Z76701 Streptomyces sp. DSM 40485. prokMSA_id:011908 Z76702 Streptomyces sp. DSM 40557. prokMSA_id:011909 Z76703 Streptomyces sp. DSM 40691. prokMSA_id:011910 Z76704 Streptomyces sp. DSM 40770. prokMSA_id:011911 Z76705 Streptomyces sp. DSM 40869. 2.30.1.8.1.12 STM.COELICOLOR_SUBGROUP 363 seqs 2.30.1.8.1.12.004 OTU 1 seq prokMSA_id:011961 AF146260 clone SCALE-8. 2.30.1.8.1.12.011 OTU 1 seq prokMSA_id:011953 X53162 Streptomyces brasiliensis str. CCIB 71 DSM 43159 . 2.30.1.8.1.12.012 OTU 3 seqs prokMSA_id:028782 AB054006 anoxic sludge KU1 prokMSA_id:054215 AF375994 Candidatus Brocadia anammoxidans complete ; internal transcribed spacer 1 complete ; tRNA-Ile and tRNA-Ala genes complete ; and 23S prokMSA_id:011950 AJ131819 clone 14. 2.30.1.8.1.12.013 OTU 1 seq prokMSA_id:011944 X81574 Streptomyces sp. NRRL 3890. 2.30.1.8.1.12.016 OTU 1 seq prokMSA_id:011932 X80826 Streptomyces espinosus NRRL 5729. 2.30.1.8.1.12.017 OTU 4 seqs prokMSA_id:051353 AF131538 Streptomyces sp. IM-6973 prokMSA_id:016460 AF131548 Streptomyces sp. IM-7054 prokMSA_id:029415 AF131598 Streptomyces sp. IM-7464 prokMSA_id:083184 AY237555 Streptomyces sp. YIM 30823 2.30.1.8.1.12.018 OTU 2 seqs prokMSA_id:063139 AF112173 Streptomyces sp. EF-76 prokMSA_id:016585 AJ391830 Streptomyces sp. A14P1 S17 2.30.1.8.1.12.020 OTU 131 seqs prokMSA_id:035830 AB045865 Streptomyces heteromorphus prokMSA_id:052246 AB045884 Streptomyces albus subsp. albus prokMSA_id:069739 AB045886 Streptomyces nogalater prokMSA_id:026260 AB045888 Streptomyces purpurascens prokMSA_id:051020 AB045889 Streptomyces steffisburgensis prokMSA_id:088725 AB098079 Streptomyces thermocarboxydus prokMSA_id:093759 AB119009 Streptomyces sp. X9 prokMSA_id:028806 AF005018 Nocardioides thermolilacinus prokMSA_id:047276 AF005019 Nocardioides thermolilacinus prokMSA_id:011930 AF012737 Streptomyces ASSF15 str. ASSF15. prokMSA_id:011931 AF012741 Streptomyces ASB37 str. ASB37. prokMSA_id:011951 AF026080 Streptomyces CHR3 str. CHR3. prokMSA_id:011955 AF026081 Streptomyces CHR28 str. CHR28. prokMSA_id:047723 AF112165 Streptomyces sp. EF-2 prokMSA_id:016535 AF112168 Streptomyces sp. EF-14 prokMSA_id:054479 AF112171 Streptomyces sp. EF-51 prokMSA_id:037883 AF112172 Streptomyces sp. EF-60 prokMSA_id:011941 AF114033 Streptomyces nodosus ATCC 14899. prokMSA_id:011942 AF114035 Streptomyces nodosus ATCC 14899. prokMSA_id:011943 AF114036 Streptomyces nodosus ATCC 14899. prokMSA_id:049221 AF131502 Streptomyces sp. IM-0594 prokMSA_id:043372 AF131505 Streptomyces sp. IM-1436 prokMSA_id:052530 AF131506 Streptomyces sp. IM-1760 prokMSA_id:031089 AF131507 Streptomyces sp. IM-1808 prokMSA_id:041610 AF131508 Streptomyces sp. IM-1817 prokMSA_id:017985 AF131511 Streptomyces sp. IM-6172 prokMSA_id:048915 AF131515 Streptomyces sp. IM-6825 prokMSA_id:020010 AF131521 Streptomyces sp. IM-6865 prokMSA_id:026263 AF131523 Streptomyces sp. IM-6868 prokMSA_id:040583 AF131571 Streptomyces sp. IM-7204 prokMSA_id:050617 AF131573 Streptomyces sp. IM-7234 prokMSA_id:037146 AF131581 Streptomyces sp. IM-7262 prokMSA_id:048297 AF131594 Streptomyces sp. IM-7410 prokMSA_id:016395 AF131595 Streptomyces sp. IM-7414 prokMSA_id:011952 AF170913 Streptomyces goraiensis str. MTCC 3154. prokMSA_id:011934 AF184081 Streptomyces sp. A25 prokMSA_id:035911 AF233338 Streptomyces maritimus prokMSA_id:049899 AF295602 Streptomyces sp. SNG9 complete prokMSA_id:030298 AF306657 Streptomyces thermosacchari strain K127 prokMSA_id:030734 AF306658 Streptomyces thermosacchari strain K126 prokMSA_id:030686 AF306659 Streptomyces thermosacchari strain K122 prokMSA_id:053467 AF306660 Streptomyces sacchari prokMSA_id:026713 AF369704 Streptomyces roseoflavus prokMSA_id:024827 AF429397 Streptomyces sp. VTT E-99-1333 B306 prokMSA_id:059982 AF452714 Streptomyces speibonae prokMSA_id:019036 AF474177 Streptomyces sp. LS-A24 prokMSA_id:055414 AF492841 Actinomycete NK951 prokMSA_id:067229 AF492844 Streptomyces sp. NK1057 prokMSA_id:093447 AF503491 Streptomyces humiferus prokMSA_id:093429 AF503492 Streptomyces violaceoruber strain ICSSB 1016 prokMSA_id:094217 AF503493 Streptomyces tuirus prokMSA_id:093516 AF503494 Streptomyces violaceoruber strain ICSSB 1018 prokMSA_id:093913 AF503495 Streptomyces caesius prokMSA_id:094280 AF503496 Streptomyces coelescens prokMSA_id:093258 AF503497 Streptomyces violaceolatus prokMSA_id:093300 AF503498 Streptomyces lividans prokMSA_id:093295 AF503499 Streptomyces cyanocolor prokMSA_id:094015 AF503500 Streptomyces cyanogenus prokMSA_id:093952 AF503501 Streptomyces rubrogriseus prokMSA_id:066282 AF506064 Streptomyces sp. LCSAOTU5 prokMSA_id:011927 AJ001433 Streptomyces NT 322 str. NT 322 strain. prokMSA_id:022974 AJ007403 Streptomyces somaliensis strain DSM 40738 prokMSA_id:011926 AJ249627 Streptomyces thermocarboxydus str. NH50. prokMSA_id:021817 AJ276570 Streptomyces paradoxus strain MAV prokMSA_id:039006 AJ306622 Streptomyces coeruleorubidus strain ISP 5145 prokMSA_id:032909 AJ306623 Streptomyces collinus strain DSM 40129 prokMSA_id:040300 AJ306624 Streptomyces sp. ISP5207 strain ISP 5207 prokMSA_id:017866 AJ310925 Streptomyces purpurascens strain DSM 40310 prokMSA_id:025920 AJ399462 Streptomyces coerulescens strain ISP 5146 prokMSA_id:017946 AJ399463 Streptomyces fumanus strain ISP 5154 prokMSA_id:028316 AJ399466 Streptomyces hawaiiensis strain ISP 5042 prokMSA_id:047534 AJ399467 Streptomyces caelestis strain ISP 5084 prokMSA_id:025540 AJ399470 Streptomyces cyaneus strain ISP 5106 prokMSA_id:032483 AJ399476 Streptomyces bellus strain ISP 5185 prokMSA_id:026848 AJ399477 Streptomyces violarus strain ISP 5205 prokMSA_id:031629 AJ399478 Streptomyces janthinus strain ISP 5206 prokMSA_id:052150 AJ399480 Streptomyces violatus strain ISP 5209 prokMSA_id:044263 AJ399482 Streptomyces thermotolerans strain ISP 5227 prokMSA_id:037337 AJ399484 Streptomyces roseoviolaceus strain ISP 5277 prokMSA_id:047324 AJ399485 Streptomyces arenae strain ISP 5293 prokMSA_id:027371 AJ399486 Streptomyces sp. strain ISP 5310 prokMSA_id:021790 AJ399489 Streptomyces iakyrus strain ISP 5482 prokMSA_id:024987 AJ399490 Streptomyces luteogriseus strain ISP 5483 prokMSA_id:031407 AJ399492 Streptomyces pallidus strain ISP 5531 prokMSA_id:039423 AJ420320 Streptomyces sp. UAH44 strain UAH44 prokMSA_id:063867 AJ494865 Streptomyces albogriseolus strain NRRL B-1305T prokMSA_id:095093 AJ508062 Streptomyces caelestis strain US24 prokMSA_id:038551 AL031260 Streptomyces coelicolor cosmid 9A10 prokMSA_id:045542 AL079345 Streptomyces coelicolor cosmid E68 prokMSA_id:024646 AL109848 Streptomyces coelicolor cosmid I51 prokMSA_id:040365 AL353861 Streptomyces coelicolor cosmid 1A8A prokMSA_id:024163 AL353862 Streptomyces coelicolor cosmid E34 prokMSA_id:036606 AL356612 Streptomyces coelicolor cosmid D72A prokMSA_id:057773 AL939108 Streptomyces coelicolor A32 complete genome; segment 5/29 prokMSA_id:057771 AL939114 Streptomyces coelicolor A32 complete genome; segment 11/29 prokMSA_id:057770 AL939116 Streptomyces coelicolor A32 complete genome; segment 13/29 prokMSA_id:057726 AL939119 Streptomyces coelicolor A32 complete genome; segment 16/29 prokMSA_id:019075 AY039029 Streptomyces lividans strain TK24 prokMSA_id:078531 AY177662 Streptomyces sp. 40003 prokMSA_id:097006 AY208912 Streptomyces africanus prokMSA_id:082727 AY222320 Streptomyces nanningensis prokMSA_id:089435 AY232254 Streptomyces cyaneus prokMSA_id:089621 AY232255 Streptomyces tendae prokMSA_id:090237 AY232256 Streptomyces caelestis prokMSA_id:083402 AY247716 Streptomyces maritimus prokMSA_id:085361 AY277529 Streptomyces hebeiensis prokMSA_id:087478 AY278903 Streptomyces sp. T3-22 prokMSA_id:087863 AY278904 Streptomyces sp. T4-4 prokMSA_id:086869 AY289116 Streptomyces aureofaciens strain IMET 43577 prokMSA_id:088208 AY295791 Streptomyces sp. 40002 prokMSA_id:090416 AY295793 Streptomyces sp. 40005 prokMSA_id:093020 AY347526 Streptomyces tendae MO2030 prokMSA_id:011940 D63870 Streptomyces eurythermus ATCC 14975 . prokMSA_id:011954 D63873 Streptomyces tendae ATCC 19812 . prokMSA_id:011933 M27245 Streptomyces ambofaciens. prokMSA_id:011925 U94490 Streptomyces thermocarboxydus str. AT37 DSM 44293 . prokMSA_id:011936 X60514 Streptomyces coelicolor. prokMSA_id:011935 X60514 Streptomyces coelicolor str. M145; A32. prokMSA_id:011959 X63847 Streptomyces lividans str. TK64. prokMSA_id:011948 X79322 Streptomyces glaucescens. prokMSA_id:011964 X79324 Streptomyces bluensis. prokMSA_id:011960 X80824 Streptomyces caelestis NRRL 2418 . prokMSA_id:011949 X80827 Streptomyces pseudogriseolus NRRL 3985. prokMSA_id:011937 X86354 Streptomyces lividans str. TK21. prokMSA_id:011956 X95470 str. SR 179c. prokMSA_id:011938 X95968 Streptomyces lividans str. TK21. prokMSA_id:011939 X95969 Streptomyces lividans str. TK21. prokMSA_id:011962 X99942 Streptomyces vellosus NRRL 8037. prokMSA_id:011946 Y00411 Streptomyces coelicolor str. A32. prokMSA_id:011928 Y00484 Streptomyces lividans str. TK21 =rrnB . prokMSA_id:011963 Y15494 Streptomyces sp. str. SSC122. 2.30.1.8.1.12.021 OTU 7 seqs prokMSA_id:080775 AF448192 actinobacterium clone ML615J-2 prokMSA_id:080446 AF448193 actinobacterium clone ML615J-23 prokMSA_id:080623 AF448198 actinobacterium clone ML817J-9 prokMSA_id:081134 AF486498 actinobacterium ML602J-44 prokMSA_id:081614 AF486500 actinobacterium ML602J-32 prokMSA_id:081635 AF486501 actinobacterium ML602J-34 prokMSA_id:062707 AF507852 actinobacterium clone ML602J-44 2.30.1.8.1.12.022 OTU 1 seq prokMSA_id:067228 AF492845 Streptomyces sp. NK528 2.30.1.8.1.12.023 OTU 1 seq prokMSA_id:090557 AY262826 Streptomyces ferralitis 2.30.1.8.1.12.999 poor quality 210 seqs prokMSA_id:030041 AB037564 Streptomyces lazureus strain:ISP 5433 prokMSA_id:051746 AB037565 Streptomyces lividans strain:ISP 5434 prokMSA_id:033150 AB037566 Streptomyces lividans strain:TK24 prokMSA_id:097392 AB122707 Streptomyces arabicus prokMSA_id:097366 AB122711 Streptomyces werraensis prokMSA_id:095698 AB122717 Streptomyces griseosporeus prokMSA_id:098559 AB122718 Streptomyces violaceus prokMSA_id:095326 AB122720 Streptomyces massasporeus prokMSA_id:098709 AB122723 Streptomyces variabilis prokMSA_id:095859 AB122724 Streptomyces rubiginosus prokMSA_id:097144 AB122725 Streptomyces flaviscleroticus prokMSA_id:097489 AB122766 Streptomyces lusitanus prokMSA_id:097229 AB122767 Streptomyces parvulus prokMSA_id:096213 AB122776 Streptomyces nogalater prokMSA_id:097430 AB122780 Streptomyces djakartensis prokMSA_id:098862 AB122796 Streptomyces sp. 384B08 prokMSA_id:096043 AB122820 Streptomyces sp. 384D10 prokMSA_id:096177 AB122860 Streptomyces sp. 387A11 prokMSA_id:098828 AB122874 Streptomyces sp. 387D05 prokMSA_id:096810 AB122883 Streptomyces sp. 387E02 prokMSA_id:095649 AB122885 Streptomyces sp. 387E04 prokMSA_id:097022 AB122887 Streptomyces sp. 387E06 prokMSA_id:098824 AB122888 Streptomyces sp. 387E12 prokMSA_id:096129 AB122889 Streptomyces sp. 387F01 prokMSA_id:096247 AB122893 Streptomyces sp. 387F06 prokMSA_id:097169 AB122898 Streptomyces sp. 387F12 prokMSA_id:095422 AB122921 Streptomyces sp. 410A04 prokMSA_id:098229 AB122929 Streptomyces sp. 410B02 prokMSA_id:097578 AB122932 Streptomyces sp. 410B05 prokMSA_id:096688 AB122968 Streptomyces sp. 410G03 prokMSA_id:098751 AB122972 Streptomyces sp. 410G08 prokMSA_id:098639 AB122976 Streptomyces sp. 410H11 prokMSA_id:096466 AB122979 Streptomyces sp. 411A07 prokMSA_id:097029 AB122980 Streptomyces sp. 411A09 prokMSA_id:097156 AB122981 Streptomyces sp. 411A12 prokMSA_id:098730 AB122982 Streptomyces sp. 411B01 prokMSA_id:096202 AB122983 Streptomyces sp. 411B02 prokMSA_id:097484 AB122986 Streptomyces sp. 411B08 prokMSA_id:095376 AB122988 Streptomyces sp. 411C01 prokMSA_id:098585 AB122991 Streptomyces sp. 411C06 prokMSA_id:096752 AB122993 Streptomyces sp. 411C08 prokMSA_id:096157 AB122994 Streptomyces sp. 411C09 prokMSA_id:098774 AB122999 Streptomyces sp. 411D06 prokMSA_id:096721 AB123004 Streptomyces sp. 411E02 prokMSA_id:095559 AB123007 Streptomyces sp. 411E07 prokMSA_id:096853 AB123015 Streptomyces sp. 411F04 prokMSA_id:095463 AB123016 Streptomyces sp. 411F05 prokMSA_id:097266 AB123023 Streptomyces sp. 411G01 prokMSA_id:095812 AB123029 Streptomyces sp. 411G07 prokMSA_id:097960 AB123035 Streptomyces sp. 411H01 prokMSA_id:097495 AB123037 Streptomyces sp. 411H04 prokMSA_id:097445 AB123039 Streptomyces sp. 411H07 prokMSA_id:096387 AB123041 Streptomyces sp. 411H10 prokMSA_id:096732 AB123052 Streptomyces sp. 413B04 prokMSA_id:098693 AB123054 Streptomyces sp. 413B07 prokMSA_id:098610 AB123138 Streptomyces sp. 415E11 prokMSA_id:097763 AB123144 Streptomyces sp. 415F05 prokMSA_id:095374 AB123157 Streptomyces sp. 415G09 prokMSA_id:098819 AB123169 Streptomyces sp. 415H10 prokMSA_id:096866 AB123170 Streptomyces sp. 415H11 prokMSA_id:096978 AB123197 Streptomyces sp. 418C05 prokMSA_id:097952 AB123201 Streptomyces sp. 418C10 prokMSA_id:097492 AB123208 Streptomyces sp. 418D09 prokMSA_id:098187 AB123210 Streptomyces sp. 418D12 prokMSA_id:095301 AB123211 Streptomyces sp. 418E01 prokMSA_id:096809 AB123212 Streptomyces sp. 418E02 prokMSA_id:096295 AB123214 Streptomyces sp. 418E05 prokMSA_id:097976 AB123216 Streptomyces sp. 418E08 prokMSA_id:095188 AB123217 Streptomyces sp. 418E09 prokMSA_id:098364 AB123220 Streptomyces sp. 418F02 prokMSA_id:096522 AB123221 Streptomyces sp. 418F03 prokMSA_id:098601 AB123223 Streptomyces sp. 418F05 prokMSA_id:098541 AB123227 Streptomyces sp. 418F10 prokMSA_id:097358 AB123229 Streptomyces sp. 418G01 prokMSA_id:095248 AB123239 Streptomyces sp. 418H06 prokMSA_id:096352 AB123241 Streptomyces sp. 418H09 prokMSA_id:096898 AB123242 Streptomyces sp. 418H11 prokMSA_id:095909 AB123248 Streptomyces sp. 419A07 prokMSA_id:096126 AB123249 Streptomyces sp. 419A08 prokMSA_id:097979 AB123251 Streptomyces sp. 419A12 prokMSA_id:097623 AB123253 Streptomyces sp. 419B02 prokMSA_id:097167 AB123263 Streptomyces sp. 419C01 prokMSA_id:097173 AB123267 Streptomyces sp. 419C05 prokMSA_id:095391 AB123269 Streptomyces sp. 419C07 prokMSA_id:097023 AB123270 Streptomyces sp. 419C08 prokMSA_id:096974 AB123272 Streptomyces sp. 419C10 prokMSA_id:095667 AB123276 Streptomyces sp. 419D03 prokMSA_id:098603 AB123294 Streptomyces sp. 419E11 prokMSA_id:096775 AB123303 Streptomyces sp. 419F11 prokMSA_id:097706 AB123304 Streptomyces sp. 419G01 prokMSA_id:096404 AB123306 Streptomyces sp. 419G03 prokMSA_id:098007 AB123307 Streptomyces sp. 419G04 prokMSA_id:096554 AB123309 Streptomyces sp. 419G07 prokMSA_id:096248 AB123310 Streptomyces sp. 419G08 prokMSA_id:096959 AB123312 Streptomyces sp. 419G10 prokMSA_id:095679 AB123314 Streptomyces sp. 419H06 prokMSA_id:097472 AB123316 Streptomyces sp. 419H12 prokMSA_id:098762 AB123322 Streptomyces sp. 424B01 prokMSA_id:098616 AB123337 Streptomyces sp. 424D12 prokMSA_id:096532 AB123340 Streptomyces sp. 424E04 prokMSA_id:095897 AB123341 Streptomyces sp. 424E05 prokMSA_id:098346 AB123348 Streptomyces sp. 424F06 prokMSA_id:098388 AB123349 Streptomyces sp. 424F08 prokMSA_id:096081 AB123353 Streptomyces sp. 424G03 prokMSA_id:098804 AB123362 Streptomyces sp. 424H07 prokMSA_id:098831 AB123405 Streptomyces sp. 428E07 prokMSA_id:097061 AB123414 Streptomyces sp. 428F09 prokMSA_id:095788 AB123432 Streptomyces sp. 428H12 prokMSA_id:095178 AB123434 Streptomyces sp. 431A04 prokMSA_id:097550 AB123437 Streptomyces sp. 431A10 prokMSA_id:097365 AB123439 Streptomyces sp. 431B01 prokMSA_id:096150 AB123440 Streptomyces sp. 431B02 prokMSA_id:095187 AB123443 Streptomyces sp. 431B06 prokMSA_id:096583 AB123479 Streptomyces sp. 431F03 prokMSA_id:097825 AB123488 Streptomyces sp. 431G06 prokMSA_id:095978 AB123494 Streptomyces sp. 431H03 prokMSA_id:098334 AB123498 Streptomyces sp. 431H10 prokMSA_id:096926 AB123504 Streptomyces sp. 434A06 prokMSA_id:098430 AB123508 Streptomyces sp. 434B01 prokMSA_id:096868 AB123511 Streptomyces sp. 434B04 prokMSA_id:098378 AB123512 Streptomyces sp. 434B05 prokMSA_id:096670 AB123514 Streptomyces sp. 434B07 prokMSA_id:096351 AB123520 Streptomyces sp. 434C11 prokMSA_id:098391 AB123521 Streptomyces sp. 434C12 prokMSA_id:097443 AB123522 Streptomyces sp. 434D01 prokMSA_id:097058 AB123523 Streptomyces sp. 434D03 prokMSA_id:095254 AB123524 Streptomyces sp. 434D04 prokMSA_id:098222 AB123528 Streptomyces sp. 434D08 prokMSA_id:096746 AB123536 Streptomyces sp. 434E05 prokMSA_id:096818 AB123537 Streptomyces sp. 434E06 prokMSA_id:098864 AB123538 Streptomyces sp. 434E07 prokMSA_id:096410 AB123539 Streptomyces sp. 434E08 prokMSA_id:098496 AB123541 Streptomyces sp. 434E10 prokMSA_id:097553 AB123543 Streptomyces sp. 434E12 prokMSA_id:095383 AB123550 Streptomyces sp. 434F11 prokMSA_id:095648 AB123567 Streptomyces sp. 434H06 prokMSA_id:096053 AB123569 Streptomyces sp. 434H09 prokMSA_id:097977 AB123662 Streptomyces sp. 306A10 prokMSA_id:096506 AB123665 Streptomyces sp. 306B03 prokMSA_id:097035 AB123668 Streptomyces sp. 306B06 prokMSA_id:098350 AB124371 Streptomyces sp. 337G02 prokMSA_id:097595 AB124485 Streptomyces sp. 343B07 prokMSA_id:095227 AB124518 Streptomyces sp. 343E06 prokMSA_id:098450 AB124524 Streptomyces sp. 343F01 prokMSA_id:071590 AF038637 Streptomyces sp. S46 prokMSA_id:026626 AF038643 Streptomyces sp. MP2 prokMSA_id:038458 AF038644 Streptomyces sp. S47 prokMSA_id:030209 AF038645 Streptomyces sp. MP9 prokMSA_id:018851 AF038648 Streptomyces sp. R2 prokMSA_id:069527 AF083589 Amazonian soil P19a prokMSA_id:032758 AF083591 Amazonian soil P1 prokMSA_id:022957 AF083608 Amazonian soil P79 prokMSA_id:026859 AF083611 Amazonian soil P8 prokMSA_id:074537 AF091217 Streptomyces sp. S46 prokMSA_id:028837 AF091218 Streptomyces sp. S47 prokMSA_id:028798 AF091230 Streptomyces sp. MP2 prokMSA_id:026020 AF091231 Streptomyces sp. MP9 prokMSA_id:026098 AF091232 Streptomyces sp. R2 prokMSA_id:074532 AF223892 Streptomyces sp. LA5 prokMSA_id:043145 AF393455 A20 prokMSA_id:071856 AF393458 A28 prokMSA_id:025285 AF417597 Streptomyces lipmanii prokMSA_id:016993 AF417599 Streptomyces parvulus prokMSA_id:036200 AF434717 Streptomyces violaceoruber complete prokMSA_id:049289 AF434942 sponge symbiont RSWS13 prokMSA_id:056277 AF544260 actinobacterium isolate T22 prokMSA_id:057986 AF544261 actinobacterium isolate T27 prokMSA_id:057984 AF544264 actinobacterium isolate T32 prokMSA_id:057981 AF544266 actinobacterium isolate T36 prokMSA_id:057978 AF544271 actinobacterium isolate T45 prokMSA_id:057969 AF544280 actinobacterium isolate T37 prokMSA_id:057967 AF544285 actinobacterium isolate T26 prokMSA_id:057954 AF544300 actinobacterium isolate T42 prokMSA_id:078980 AF547041 405 prokMSA_id:029299 AJ132633 Streptomyces noursei isolate NG13/14 prokMSA_id:051341 AJ291995 Streptomyces rochei strain DSM 40231T prokMSA_id:038581 AJ291996 Streptomyces plicatus strain DSM 40319T prokMSA_id:018553 AJ344120 clone B-19 prokMSA_id:052427 AJ344121 clone B-34 prokMSA_id:029061 AJ344123 clone A-53 prokMSA_id:021200 AJ344124 clone A-67 prokMSA_id:033104 AJ344130 clone B-162 prokMSA_id:060086 AJ427679 actinomycete clone STM-A4 prokMSA_id:060087 AJ427680 actinomycete clone STM-A5 prokMSA_id:049723 AJ438272 streptomycete clone K-35 prokMSA_id:071712 AJ438284 streptomycete clone S-192 prokMSA_id:024915 AJ438288 streptomycete clone S-208 prokMSA_id:084706 AJ555879 Streptomyces sp. B343 isolate B343 prokMSA_id:085696 AJ555880 Streptomyces sp. B344 isolate B344 prokMSA_id:085253 AJ555885 Streptomyces sp. B349 isolate B349 prokMSA_id:098390 AJ574919 Streptomyces sp. BC580 clone BC580 prokMSA_id:096131 AJ574920 Streptomyces sp. BC586 clone BC586 prokMSA_id:096024 AJ574925 Streptomyces sp. BC596 clone BC596 prokMSA_id:096152 AJ574927 Streptomyces sp. BC598 clone BC598 prokMSA_id:096997 AJ583703 Streptomyces sp. 'Khe che' isolate Khe che prokMSA_id:042692 AY039459 Earthworm cast C17M1 prokMSA_id:049410 AY039493 Soil S60D1 prokMSA_id:063039 AY122306 Denitrifying ZC2 prokMSA_id:063038 AY122307 Denitrifying YC2 prokMSA_id:055708 AY144607 Actinobacterium MS 3/20 prokMSA_id:098453 AY262292 Streptomyces sp. E8 prokMSA_id:087426 AY278877 Streptomyces sp. T2-10 prokMSA_id:087819 AY278901 Streptomyces sp. T2-7 prokMSA_id:087542 AY278902 Streptomyces sp. T2-8 prokMSA_id:096320 AY396146 Streptomyces danangensis 11 prokMSA_id:011957 D85108 Streptomyces lavendulae subsp. lavendulae IFO 3361. prokMSA_id:011958 D85120 Streptomyces virginiae ATCC 13013. prokMSA_id:011945 U68677 clone P51. prokMSA_id:011947 U72176 Streptomyces coelicolor str. A32. prokMSA_id:011929 U72179 Streptomyces lividans str. TK21. 2.30.1.8.2 ACTINOMADURA_SUBGROUP 339 seqs 2.30.1.8.2.1 NOCARDIOPSIS_SUBGROUP 119 seqs 2.30.1.8.2.1.1 TBF.FUSCA_SUBGROUP 17 seqs 2.30.1.8.2.1.1.001 OTU 3 seqs prokMSA_id:032820 AB006171 Thermomonospora fusca strain IFO 14071 prokMSA_id:011970 AF002264 Thermobifida fusca str. 190Th ATCC 27730 . prokMSA_id:011968 AF028245 Thermobifida fusca str. 190Th ATCC 27730 . 2.30.1.8.2.1.1.002 OTU 2 seqs prokMSA_id:011969 AF142818 clone ACE-43. prokMSA_id:036942 AF424413 MERTZ_2CM_212 2.30.1.8.2.1.1.003 OTU 4 seqs prokMSA_id:045805 AB006170 Thermomonospora mesophila strain IFO 14179 prokMSA_id:011965 AF002260 Thermobifida alba JCM 3077 . prokMSA_id:011967 AF002265 Thermomonospora mesouviformis str. 3169. prokMSA_id:011966 AF028247 Thermobifida alba str. T-3 ATCC 27644 . 2.30.1.8.2.1.1.004 OTU 3 seqs prokMSA_id:023192 AF351232 actinobacterium clone 4-42 prokMSA_id:063110 AY093472 clone MB-B2-107 prokMSA_id:063108 AY093478 clone MC-C2-120 2.30.1.8.2.1.1.005 OTU 1 seq prokMSA_id:049061 AF424410 MERTZ_2CM_64 2.30.1.8.2.1.1.006 OTU 1 seq prokMSA_id:052732 AJ298058 Thermobifida cellulolytica strain TB100 2.30.1.8.2.1.1.999 poor quality 3 seqs prokMSA_id:042028 AJ298059 Thermobifida cellulolytica strain K21 prokMSA_id:047323 AJ298060 Thermobifida cellulolytica strain TB108 prokMSA_id:028448 AJ298061 Thermobifida cellulolytica strain TB110 2.30.1.8.2.1.2 NRP.DASSONVILLEI_SUBGROUP 102 seqs 2.30.1.8.2.1.2.003 OTU 70 seqs prokMSA_id:041607 AF105971 Nocardiopsis tropica prokMSA_id:052650 AF131449 Nocardiopsis sp. IM-1287 prokMSA_id:025480 AF131450 Nocardiopsis sp. IM-3701 prokMSA_id:037863 AF131451 Nocardiopsis sp. IM-3791 prokMSA_id:067687 AF360735 Nocardiopsis alba KS21 prokMSA_id:023374 AF479269 Nocardiopsis dassonvillei strain 823 prokMSA_id:055246 AF540000 Nocardiopsis tangguensis prokMSA_id:024444 AJ290448 Nocardiopsis halototerans strain DSM 44410 prokMSA_id:044792 AJ420769 Nocardiopsis metallicus strain R2A prokMSA_id:079107 AJ539401 Nocardiopsis aegyptica strain DSM 44442 prokMSA_id:052175 AY027776 Nocardiopsis alba prokMSA_id:035537 AY028325 Nocardiopsis sp. ES10.1 prokMSA_id:047196 AY030320 Nocardiopsis dassonvillei strain JPL-3 prokMSA_id:030188 AY036000 Nocardiopsis exhalans prokMSA_id:026617 AY036001 Nocardiopsis umidischolae prokMSA_id:023931 AY036002 Nocardiopsis sp. 123 prokMSA_id:033658 AY036003 Nocardiopsis sp. 704a prokMSA_id:025877 AY036004 Nocardiopsis sp. 64/93 prokMSA_id:055606 AY117435 Nocardiopsis viridoflava prokMSA_id:060273 AY129814 Nocardiopsis sp. clone GCPF48 prokMSA_id:083383 AY230848 Nocardiopsis egyptensis prokMSA_id:088777 AY277558 Nocardiopsis dassonvillei strain F101 prokMSA_id:088443 AY295798 Nocardiopsis sp. 40009 prokMSA_id:088992 AY295800 Streptomyces sp. 10036 prokMSA_id:088578 AY297774 Nocardiopsis sp. 10002 prokMSA_id:089384 AY297775 Nocardiopsis sp. 10010 prokMSA_id:090186 AY297776 Nocardiopsis sp. 10021 prokMSA_id:088924 AY297777 Nocardiopsis sp. 10030 prokMSA_id:090646 AY297779 Nocardiopsis sp. 60002 prokMSA_id:090151 AY297780 Nocardiopsis sp. 60006 prokMSA_id:086971 AY299626 Streptomyces sp. YIM 80125 prokMSA_id:087828 AY299627 Nocardiopsis sp. YIM 80129 prokMSA_id:087523 AY299628 Nocardiopsis sp. YIM 80130 prokMSA_id:087657 AY299629 Nocardiopsis sp. YIM 80133 prokMSA_id:087611 AY299630 Nocardiopsis sp. YIM 80174 prokMSA_id:087030 AY299631 Nocardiopsis sp. YIM 80181 prokMSA_id:087267 AY299632 Nocardiopsis sp. YIM 80182 prokMSA_id:087973 AY299633 Nocardiopsis sp. YIM 80251 prokMSA_id:086708 AY299634 Nocardiopsis sp. YIM 80191 prokMSA_id:088588 AY331686 Nocardiopsis sp. DSM 44659 prokMSA_id:091818 AY336502 Nocardiopsis sp. 20027 prokMSA_id:091470 AY336503 Nocardiopsis sp. 20028 prokMSA_id:091076 AY336504 Nocardiopsis sp. 20029 prokMSA_id:091188 AY336505 Nocardiopsis sp. 20030 prokMSA_id:091801 AY336506 Nocardiopsis sp. 20031 prokMSA_id:091800 AY336507 Nocardiopsis sp. 20032 prokMSA_id:091371 AY336508 Nocardiopsis sp. 20033 prokMSA_id:091744 AY336509 Nocardiopsis sp. 20034 prokMSA_id:091100 AY336510 Nocardiopsis sp. 20035 prokMSA_id:091483 AY336511 Nocardiopsis sp. 20036 prokMSA_id:091919 AY336512 Nocardiopsis sp. 20037 prokMSA_id:091763 AY336513 Nocardiopsis sp. 20038 prokMSA_id:091843 AY336514 Nocardiopsis sp. 20039 prokMSA_id:091943 AY336516 Nocardiopsis sp. 20041 prokMSA_id:091976 AY336517 Nocardiopsis sp. 20052 prokMSA_id:091364 AY336518 Nocardiopsis sp. 20057 prokMSA_id:091114 AY336519 Nocardiopsis sp. 20088 prokMSA_id:094557 AY373032 Nocardiopsis sp. YIM 90039 prokMSA_id:011977 D85492 Nocardiopsis dassonvillei IFO 14626 . prokMSA_id:011971 X97882 Nocardiopsis dassonvillei DSM 40465 . prokMSA_id:011979 X97883 Nocardiopsis alba DSM 43377 . prokMSA_id:011983 X97884 Nocardiopsis prasina DSM 43845 . prokMSA_id:011973 X97885 Nocardiopsis dassonvillei DSM 43884 . prokMSA_id:011976 X97886 Nocardiopsis dassonvillei DSM 43111 . prokMSA_id:011982 X97887 Nocardiopsis listeri DSM 40297 . prokMSA_id:011978 X97888 Nocardiopsis lucentensis DSM 44048 . prokMSA_id:011980 Y07678 Prauseria hordei str. SH261. prokMSA_id:046028 Y07679 P.hordei isolate SH36 prokMSA_id:011981 Y07680 Prauseria hordei str. SH82. prokMSA_id:011975 Y13593 Nocardiopsis synnemataformans str. D-1215 JCM 10456 . 2.30.1.8.2.1.2.004 OTU 1 seq prokMSA_id:011974 X87313 str. SR 210. 2.30.1.8.2.1.2.005 OTU 2 seqs prokMSA_id:011972 AF178988 str. YIM90002. prokMSA_id:044196 AF462347 Streptomonospora albus 2.30.1.8.2.1.2.007 OTU 2 seqs prokMSA_id:039955 AF195411 Nocardiopsis halophila prokMSA_id:041061 AJ421018 Nocardiopsis halophila strain DSM 44494T 2.30.1.8.2.1.2.008 OTU 12 seqs prokMSA_id:045876 AF105972 Nocardiopsis trehalosi prokMSA_id:063704 AF328401 Nocardiopsis sp. 97-38-018A complete prokMSA_id:063706 AF328402 Nocardiopsis sp. 98-10-097A complete prokMSA_id:063709 AF328403 Nocardiopsis sp. 98-29-191A complete prokMSA_id:063708 AF328404 Nocardiopsis sp. 98-52-146A complete prokMSA_id:063707 AF328405 Nocardiopsis sp. 98-52-148A complete prokMSA_id:063705 AF328406 Nocardiopsis sp. 98-52-149A complete prokMSA_id:063703 AF328407 Nocardiopsis sp. 98-52-204A complete prokMSA_id:063701 AF328408 Nocardiopsis sp. 98-08-290A complete prokMSA_id:063702 AF328409 Nocardiopsis sp. 99-21-444A complete prokMSA_id:063697 AF328410 Nocardiopsis sp. 99-20-007A complete prokMSA_id:063691 AF361322 Nocardiopsis sp. 99-08-186A complete 2.30.1.8.2.1.2.011 OTU 2 seqs prokMSA_id:067690 AF360733 Nocardiopsis compostus KS8 prokMSA_id:067689 AF360734 Nocardiopsis compostus KS9 2.30.1.8.2.1.2.013 OTU 7 seqs prokMSA_id:053459 AF195412 Nocardiopsis kunsanensis HA-9T prokMSA_id:025615 AF251709 Brachystreptospora xinjiangensis prokMSA_id:068398 AY082064 Nocardiopsis sp. YIM90006 prokMSA_id:068397 AY082065 Nocardiopsis sp. YIM90009 prokMSA_id:068396 AY082066 Nocardiopsis sp. YIM90014 prokMSA_id:091978 AY336515 Nocardiopsis sp. 10063 prokMSA_id:094921 AY373031 Nocardiopsis salina 2.30.1.8.2.1.2.014 OTU 1 seq prokMSA_id:089696 AY331687 Nocardiopsis benisuefensis 2.30.1.8.2.1.2.999 poor quality 5 seqs prokMSA_id:019695 AJ251951 clone Hb5K24 prokMSA_id:046423 AJ400543 clone Hb3-K23 prokMSA_id:084293 AY217501 Actinobacterium WCIP6 prokMSA_id:011984 X86601 unnamed organism. prokMSA_id:050452 Y17515 Nocardiopsis alba strain 123 2.30.1.8.2.2 THS.BISPORA_SUBGROUP 6 seqs 2.30.1.8.2.2.001 OTU 2 seqs prokMSA_id:011989 U83909 Thermobispora bispora str. R51 ATCC 19993 =. prokMSA_id:011990 U83911 Thermobispora bispora str. R51 ATCC 19993 =rrnC. 2.30.1.8.2.2.002 OTU 4 seqs prokMSA_id:011988 U58523 Thermobispora bispora str. R51 ATCC 19993 . prokMSA_id:011987 U58524 Microbispora bispora JCM 3082. prokMSA_id:011985 U83910 Thermobispora bispora str. R51 ATCC 19993 =rrnB. prokMSA_id:011986 U83912 Thermobispora bispora str. R51 ATCC 19993 =rrnD. 2.30.1.8.2.3 TMMS.CURVATA_SUBGROUP 16 seqs 2.30.1.8.2.3.001 OTU 3 seqs prokMSA_id:011998 AF002262 Thermomonospora curvata JCM 3096 . prokMSA_id:011999 D86945 Thermomonospora curvata IFO 15933. prokMSA_id:011996 X97893 Thermomonospora curvata DSM 43183 . 2.30.1.8.2.3.002 OTU 1 seq prokMSA_id:011997 Z73383 clone Ep_T1.21. 2.30.1.8.2.3.003 OTU 3 seqs prokMSA_id:016752 AF131317 Actinomadura sp. IM-7012 prokMSA_id:038367 AJ420135 Actinomadura echinospora strain DSM 43163T prokMSA_id:011991 U49004 Actinomadura echinospora IFO 14042 . 2.30.1.8.2.3.004 OTU 1 seq prokMSA_id:067265 AF495423 clone F13.25 2.30.1.8.2.3.005 OTU 1 seq prokMSA_id:088328 AY297977 clone TA55_Ba_69 2.30.1.8.2.3.999 poor quality 7 seqs prokMSA_id:045860 AF315416 temperate forest soil C6017 prokMSA_id:062310 AY124406 actinobacterium clone CSc02 prokMSA_id:091738 AY330266 actinobacterium clone g99-H2 prokMSA_id:011994 Z73394 clone Ep_T1.22. prokMSA_id:011995 Z73408 clone Ep_T1.36. prokMSA_id:011992 Z73410 clone Ep_T1.100. prokMSA_id:011993 Z73411 clone Ep_T1.142. 2.30.1.8.2.4 AMD.HERBIDA_SUBGROUP 41 seqs 2.30.1.8.2.4.002 OTU 1 seq prokMSA_id:012010 Z73382 clone Ep_T1.9. 2.30.1.8.2.4.003 OTU 1 seq prokMSA_id:012008 Z73381 clone Ep_T1.5. 2.30.1.8.2.4.004 OTU 1 seq prokMSA_id:012007 Z73384 clone Ep_T1.46. 2.30.1.8.2.4.007 OTU 8 seqs prokMSA_id:012012 AB006160 Sarraceniospora aurea IFO 15120. prokMSA_id:012013 AB006177 Sarraceniospora aurea IFO 14752. prokMSA_id:039765 AF131298 Actinocorallia sp. IM-5291 prokMSA_id:020201 AF134066 Actinomadura aurantiaca prokMSA_id:088697 AY295796 Actinomadura sp. 40007 prokMSA_id:089686 AY295797 Actinomadura sp. 40008 prokMSA_id:012004 D85473 Actinocorallia herbida str. AL-50780 IFO 15485 . prokMSA_id:012002 U49007 Actinomadura libanotica IFO 14095 . 2.30.1.8.2.4.008 OTU 1 seq prokMSA_id:018830 AF163123 Spirillospora rubra 2.30.1.8.2.4.010 OTU 5 seqs prokMSA_id:012003 AB015267 str. JTB31. prokMSA_id:039129 AF419678 a2b024 prokMSA_id:041000 AF424426 actinobacterium MERTZ_21CM_124 prokMSA_id:075070 AY164398 actinobacterium clone DLIB-23 prokMSA_id:092550 AY354150 clone pIR3BD05 2.30.1.8.2.4.011 OTU 1 seq prokMSA_id:046523 AF424419 actinobacterium MERTZ_2CM_158 2.30.1.8.2.4.012 OTU 2 seqs prokMSA_id:074068 AF134068 Actinomadura glomerata prokMSA_id:051620 AF163117 Actinomadura longicatena 2.30.1.8.2.4.013 OTU 1 seq prokMSA_id:072811 AF498716 Ellin334 2.30.1.8.2.4.014 OTU 1 seq prokMSA_id:077197 AY154618 earthworm cast clone c267 2.30.1.8.2.4.015 OTU 1 seq prokMSA_id:098009 AY225655 actinobacterium clone AT-s2-33 2.30.1.8.2.4.999 poor quality 18 seqs prokMSA_id:055473 AB087292 clone:CF14 prokMSA_id:068078 AF365666 clone BM89DS6BbE2 prokMSA_id:068023 AF365728 clone BT60DS4BA8 prokMSA_id:067934 AF365839 clone BT60PA10BE11 prokMSA_id:078961 AF543365 clone G prokMSA_id:060126 AJ427639 actinomycete clone ACT-A5 prokMSA_id:060110 AJ427655 actinomycete clone ACT-C5 prokMSA_id:060080 AJ427687 actinomycete clone TMM-B1 prokMSA_id:068809 AJ438275 actinobacterium clone S-85 prokMSA_id:061354 AY043891 actinobacterium clone SMS9.112WL prokMSA_id:066829 AY096182 clone F2-69 prokMSA_id:069361 AY143784 Actinocorallia sp. clone Vr1 prokMSA_id:012000 D50660 Actinomadura glomerata str. I-226 JCM 9376 . prokMSA_id:012001 D50669 Actinomadura aurantiaca JCM 8201 . prokMSA_id:012011 U35709 str. L4. prokMSA_id:012005 Z73397 clone Ep_T1.102. prokMSA_id:012009 Z73409 clone Ep_T1.86. prokMSA_id:012006 Z73414 clone Ep_T1.288. 2.30.1.8.2.5 AMD.MADURAE_SUBGROUP 157 seqs 2.30.1.8.2.5.002 OTU 2 seqs prokMSA_id:012050 Z73387 clone Ep_T1.11. prokMSA_id:012053 Z73389 clone Ep_T1.204. 2.30.1.8.2.5.003 OTU 1 seq prokMSA_id:012051 Z73385 clone Ep_T1.12. 2.30.1.8.2.5.004 OTU 5 seqs prokMSA_id:074550 AF131494 Spirillospora sp. IM-1018 prokMSA_id:050211 AF131495 Spirillospora sp. IM-1043 prokMSA_id:031336 AF131496 Spirillospora sp. IM-3041 prokMSA_id:046173 AF163124 Spirillospora sp. JCM3123 prokMSA_id:012049 D85498 Spirillospora albida IFO 12248 . 2.30.1.8.2.5.006 OTU 3 seqs prokMSA_id:040889 AJ420134 Actinomadura namibiensis strain DSM 44197T prokMSA_id:012047 U49006 Actinomadura kijaniata IFO 14229 . prokMSA_id:012046 X97890 Actinomadura kijaniata DSM 43764 . 2.30.1.8.2.5.007 OTU 1 seq prokMSA_id:012045 AB006157 Parvopolyspora pallida IFO 14788. 2.30.1.8.2.5.008 OTU 1 seq prokMSA_id:012044 Z73391 clone Ep_T1.240. 2.30.1.8.2.5.009 OTU 2 seqs prokMSA_id:032859 AJ420138 Actinomadura atramentaria strain DSM 43919T prokMSA_id:012043 U49000 Actinomadura atramentaria IFO 14695 . 2.30.1.8.2.5.012 OTU 1 seq prokMSA_id:012039 AF154127 Actinomadura catellatospora str. AS4.1522T. 2.30.1.8.2.5.013 OTU 1 seq prokMSA_id:012034 Z73393 clone Ep_T1.145. 2.30.1.8.2.5.014 OTU 2 seqs prokMSA_id:027241 AF134069 Actinomadura rubrobrunea prokMSA_id:012031 D86943 Excellospora viridilutea IFO 14480. 2.30.1.8.2.5.018 OTU 1 seq prokMSA_id:012028 U49009 Actinomadura macra IFO 14102 . 2.30.1.8.2.5.019 OTU 1 seq prokMSA_id:012027 U49010 Actinomadura rugatobispora IFO 14382 . 2.30.1.8.2.5.020 OTU 1 seq prokMSA_id:012025 AJ232680 clone WB002. 2.30.1.8.2.5.024 OTU 3 seqs prokMSA_id:016959 AF134067 Actinomadura cremea subsp. cremea prokMSA_id:028823 AF223348 Pseudonocardiaceae str. PA123 complete prokMSA_id:012030 U49003 Actinomadura cremea subsp. rifamycini IFO 14183 . 2.30.1.8.2.5.027 OTU 1 seq prokMSA_id:021234 AF357993 clone LO12.2 2.30.1.8.2.5.029 OTU 4 seqs prokMSA_id:022030 AF163115 Actinomadura hibisca prokMSA_id:024572 AJ420136 Actinomadura hibisca strain DSM 44148T prokMSA_id:018352 AJ420137 Actinomadura fulvescens strain DSM 43923T prokMSA_id:012058 U49005 Actinomadura fulvescens str. IFO 14347 . 2.30.1.8.2.5.030 OTU 1 seq prokMSA_id:022484 AF163120 Actinomadura spadix 2.30.1.8.2.5.032 OTU 56 seqs prokMSA_id:012038 AB006155 Streptomycoides glaucoflavus IFO 14668. prokMSA_id:025601 AB006172 Thermomonospora formosensis strain IFO 14204 prokMSA_id:012014 AF002263 Actinomadura formosensis str. C-36820 JCM 7474 . prokMSA_id:029222 AF131299 Actinomadura sp. IM-1232 prokMSA_id:044527 AF131300 Actinomadura sp. IM-1290 prokMSA_id:026709 AF131301 Actinomadura sp. IM-2953 prokMSA_id:053251 AF131302 Actinomadura sp. IM-3046 prokMSA_id:030155 AF131303 Actinomadura sp. IM-3889 prokMSA_id:046689 AF131304 Actinomadura sp. IM-5243 prokMSA_id:036940 AF131305 Actinomadura sp. IM-5508 prokMSA_id:028320 AF131306 Actinomadura sp. IM-5556 prokMSA_id:038101 AF131307 Actinomadura sp. IM-5929 prokMSA_id:028332 AF131308 Actinomadura sp. IM-6226 prokMSA_id:047587 AF131309 Actinomadura sp. IM-6793 prokMSA_id:025779 AF131310 Actinomadura sp. IM-6830 prokMSA_id:036307 AF131311 Actinomadura sp. IM-6847 prokMSA_id:020218 AF131312 Actinomadura sp. IM-6849 prokMSA_id:038376 AF131313 Actinomadura sp. IM-6891 prokMSA_id:038328 AF131314 Actinomadura sp. IM-6895 prokMSA_id:053897 AF131315 Actinomadura sp. IM-6933 prokMSA_id:040449 AF131316 Actinomadura sp. IM-6993 prokMSA_id:029909 AF131318 Actinomadura sp. IM-7044 prokMSA_id:042232 AF131319 Actinomadura sp. IM-7045 prokMSA_id:053937 AF131320 Actinomadura sp. IM-7056 prokMSA_id:034334 AF131321 Actinomadura sp. IM-7057 prokMSA_id:043129 AF131322 Actinomadura sp. IM-7092 prokMSA_id:052564 AF131323 Actinomadura sp. IM-7177 prokMSA_id:041881 AF131324 Actinomadura sp. IM-7187 prokMSA_id:044955 AF131325 Actinomadura sp. IM-7212 prokMSA_id:022578 AF131326 Actinomadura sp. IM-7213 prokMSA_id:033968 AF131327 Actinomadura sp. IM-7214 prokMSA_id:039563 AF131328 Actinomadura sp. IM-7222 prokMSA_id:045338 AF131329 Actinomadura sp. IM-7258 prokMSA_id:019840 AF131330 Actinomadura sp. IM-7397 prokMSA_id:040894 AF131331 Actinomadura sp. IM-7435 prokMSA_id:041894 AF131332 Actinomadura sp. IM-8473 prokMSA_id:026732 AF134070 Actinomadura vinacea prokMSA_id:012040 AF153881 Actinomadura glucoflavus str. As4.1202T. prokMSA_id:022138 AF163114 Actinomadura fibrosa prokMSA_id:037892 AF163119 Actinomadura pelletieri prokMSA_id:029010 AF163122 Actinomadura yumaensis prokMSA_id:029049 AF223350 Pseudonocardiaceae str. PA151 complete prokMSA_id:037666 AF277195 Actinomadura mexicana prokMSA_id:045056 AJ420139 Actinomadura citrea strain DSM 43461T prokMSA_id:039421 AJ420140 Actinomadura formosensis strain DSM 43997T prokMSA_id:038388 AJ420141 Actinomadura viridis strain DSM 43175T prokMSA_id:051435 AY035999 Actinomadura nitritigenes prokMSA_id:097245 AY273787 Actinomadura meyerii A288 prokMSA_id:012029 D85467 Actinomadura viridis str. Mt-1 IFO 15238. prokMSA_id:012048 D85468 Actinomadura madurae IFO 14623 . prokMSA_id:012035 U49001 Actinomadura citrea IFO 14678 . prokMSA_id:012041 U49002 Actinomadura coerulea IFO 14679 . prokMSA_id:012037 U49008 Actinomadura luteofluorescens IFO 13057 . prokMSA_id:012036 U49011 Actinomadura verrucosospora IFO 14100 . prokMSA_id:012032 U58527 Actinomadura madurae JCM 7436 . prokMSA_id:012033 X97889 Actinomadura madurae DSM 43067 . 2.30.1.8.2.5.033 OTU 6 seqs prokMSA_id:027884 AF131641 Thermomonosporaceae str. IM-6903 prokMSA_id:023017 AF131643 Thermomonosporaceae str. IM-6932 prokMSA_id:022727 AF131644 Thermomonosporaceae str. IM-7042 prokMSA_id:025933 AF131645 Thermomonosporaceae str. IM-7058 prokMSA_id:046915 AF131646 Thermomonosporaceae str. IM-7209 prokMSA_id:042058 AF131647 Thermomonosporaceae str. IM-7387 2.30.1.8.2.5.034 OTU 1 seq prokMSA_id:026839 AF163118 Actinomadura oligospora 2.30.1.8.2.5.035 OTU 1 seq prokMSA_id:030118 AF163121 Actinomadura umbrina 2.30.1.8.2.5.036 OTU 1 seq prokMSA_id:031446 AF163116 Actinomadura livida 2.30.1.8.2.5.037 OTU 1 seq prokMSA_id:034148 AJ252667 Agricultural soil clone SC-I-92 2.30.1.8.2.5.038 OTU 1 seq prokMSA_id:050802 AF131642 Thermomonosporaceae str. IM-6923 2.30.1.8.2.5.039 OTU 1 seq prokMSA_id:051116 AY035998 Actinomadura latina 2.30.1.8.2.5.040 OTU 2 seqs prokMSA_id:060079 AJ427691 actinomycete clone TMM-B5 prokMSA_id:060081 AJ427692 actinomycete clone TMM-B6 2.30.1.8.2.5.041 OTU 1 seq prokMSA_id:063222 AF524002 clone FW53 2.30.1.8.2.5.042 OTU 1 seq prokMSA_id:066838 AY096176 clone F2-48 2.30.1.8.2.5.043 OTU 1 seq prokMSA_id:075236 AY150867 delta clone glen99_27 2.30.1.8.2.5.044 OTU 1 seq prokMSA_id:075776 AY150919 actinobacterium clone WYO5bC 2.30.1.8.2.5.045 OTU 2 seqs prokMSA_id:076900 AY150874 Rubrobacteridae clone glen99_5 prokMSA_id:077272 AY150878 Rubrobacteridae clone glen99_13 2.30.1.8.2.5.046 OTU 1 seq prokMSA_id:080124 AJ538056 actinobacterium clone OF33 2.30.1.8.2.5.047 OTU 1 seq prokMSA_id:080174 AJ538051 actinobacterium clone OF13 2.30.1.8.2.5.048 OTU 1 seq prokMSA_id:083429 AJ555219 actinomycete clone AOF10 2.30.1.8.2.5.999 poor quality 47 seqs prokMSA_id:097050 AB122867 Actinomadura sp. 387B11 prokMSA_id:098158 AB122916 Actinomadura sp. 387H07 prokMSA_id:097517 AB123068 Actinomadura sp. 413D10 prokMSA_id:095319 AB123075 Actinomadura sp. 413F04 prokMSA_id:098273 AB123081 Actinomadura sp. 413G02 prokMSA_id:098700 AB123101 Actinomadura sp. 415A12 prokMSA_id:098822 AB123237 Actinomadura sp. 418H03 prokMSA_id:098550 AB123260 Actinomadura sp. 419B09 prokMSA_id:095407 AB123423 Actinomadura sp. 428G07 prokMSA_id:098063 AB123461 Actinomadura sp. 431D03 prokMSA_id:097499 AB123466 Actinomadura sp. 431D09 prokMSA_id:096057 AB123688 Actinomadura sp. 306D04 prokMSA_id:095447 AB124085 Actinomadura sp. 322C06 prokMSA_id:098104 AB124123 Actinomadura sp. 322G01 prokMSA_id:095899 AB124253 Actinomadura sp. 334D05 prokMSA_id:096493 AB124265 Actinomadura sp. 334E07 prokMSA_id:095831 AB124382 Actinomadura sp. 337H02 prokMSA_id:073307 AF200730 MRUNI5 prokMSA_id:069957 AF200731 MRUNI4 prokMSA_id:050680 AJ419645 clone R25 prokMSA_id:060111 AJ427652 actinomycete clone ACT-C2 prokMSA_id:056726 AJ427657 actinomycete clone ACT-C7 prokMSA_id:071266 AJ427659 actinomycete clone ACT-C9 prokMSA_id:060106 AJ427661 actinomycete clone ACT-C11 prokMSA_id:060077 AJ427688 actinomycete clone TMM-B2 prokMSA_id:060078 AJ427689 actinomycete clone TMM-B3 prokMSA_id:056141 AJ427690 actinomycete clone TMM-B4 prokMSA_id:079616 AY192286 actinobacterium clone W2b-5B prokMSA_id:095504 AY262333 Actinomadura madurae clone B2 prokMSA_id:098067 AY262334 Actinomadura madurae clone B1 prokMSA_id:012057 D50667 Actinomadura verrucosospora JCM 3147 . prokMSA_id:012056 D50668 Actinomadura madurae JCM 7436 . prokMSA_id:012054 U35701 str. 6201. prokMSA_id:012055 U35703 str. 7702B. prokMSA_id:012026 U68669 clone P42. prokMSA_id:012052 Z73392 clone Ep_T1.170. prokMSA_id:012020 Z73395 clone Ep_T1.20. prokMSA_id:012023 Z73396 clone Ep_T1.79. prokMSA_id:012024 Z73398 clone Ep_T1.93. prokMSA_id:012015 Z73399 clone Ep_T1.101. prokMSA_id:012016 Z73400 clone Ep_T1.117. prokMSA_id:012019 Z73401 clone Ep_T1.181. prokMSA_id:012022 Z73403 clone Ep_T1.256. prokMSA_id:012017 Z73404 clone Ep_T1.156. prokMSA_id:012021 Z73405 clone Ep_T1.229. prokMSA_id:012018 Z73413 clone Ep_T1.177. prokMSA_id:012042 Z73415 clone Ep_T1.112. 2.30.1.8.3 STREPTOSPORANGIUM_SUBGROUP 519 seqs 2.30.1.8.3.1 STS.NONDIASTATICUM_SUBGROUP 9 seqs 2.30.1.8.3.1.001 OTU 1 seq prokMSA_id:012062 X70425 Streptosporangium roseum DSM 43021 . 2.30.1.8.3.1.002 OTU 1 seq prokMSA_id:012061 Y07606 DA016 2.30.1.8.3.1.003 OTU 1 seq prokMSA_id:012060 Z73390 clone Ep_T1.217. 2.30.1.8.3.1.004 OTU 1 seq prokMSA_id:012059 U48996 Streptosporangium roseum JCM 3005 . 2.30.1.8.3.1.005 OTU 1 seq prokMSA_id:063225 AF524001 clone FW95 2.30.1.8.3.1.006 OTU 1 seq prokMSA_id:063300 AF523918 clone RCP2-68 2.30.1.8.3.1.999 poor quality 3 seqs prokMSA_id:091871 AY330264 actinobacterium clone g99-H7 prokMSA_id:091942 AY330267 actinobacterium clone g99-H4 prokMSA_id:012063 X70426 Streptosporangium nondiastaticum DSM 43348 . 2.30.1.8.3.2 STS.PSEUDOVULGARE_SUBGROUP 20 seqs 2.30.1.8.3.2.003 OTU 16 seqs prokMSA_id:027933 AF131616 Streptosporangium sp. IM-6771.2 prokMSA_id:024620 AF131617 Streptosporangium sp. IM-6844 prokMSA_id:049575 AF131618 Streptosporangium sp. IM-6852 prokMSA_id:052898 AF131619 Streptosporangium sp. IM-6894 prokMSA_id:019484 AF131620 Streptosporangium sp. IM-6913 prokMSA_id:049189 AF131622 Streptosporangium sp. IM-7016 prokMSA_id:052045 AF131623 Streptosporangium sp. IM-7017 prokMSA_id:019443 AF131624 Streptosporangium sp. IM-7048 prokMSA_id:031351 AF131625 Streptosporangium sp. IM-7087 prokMSA_id:012072 U48992 Streptosporangium fragile IFO 14311 . prokMSA_id:012070 U48994 Streptosporangium nondiastaticum IFO 13990 . prokMSA_id:012069 U48995 Streptosporangium pseudovulgare IFO 13991 . prokMSA_id:012071 X89942 Streptosporangium fragile DSM 43847 . prokMSA_id:012065 X89945 Streptosporangium nondiastaticum DSM 43848 . prokMSA_id:012068 X89946 Streptosporangium pseudovulgare DSM 43181 . prokMSA_id:012067 X89954 Streptosporangium viridialbum DSM 46131. 2.30.1.8.3.2.999 poor quality 4 seqs prokMSA_id:096018 AB124502 Streptosporangium sp. 343C12 prokMSA_id:097624 AB124505 Streptosporangium sp. 343D03 prokMSA_id:012064 X70428 Streptosporangium pseudovulgare. prokMSA_id:012066 Z73412 clone Ep_T1.143. 2.30.1.8.3.3 STS.ROSEUM_SUBGROUP 155 seqs 2.30.1.8.3.3.003 OTU 24 seqs prokMSA_id:024432 AF131613 Streptosporangium sp. IM-6627 prokMSA_id:026782 AF131621 Streptosporangium sp. IM-7005 prokMSA_id:012095 AF191733 Streptosporangium 11007 str. 11007. prokMSA_id:012080 AF191734 Streptosporangium 7113 str. 7113. prokMSA_id:012096 AF191735 Streptosporangium 15110 str. 15110. prokMSA_id:089211 AY295802 Streptosporangium sp. 40012 prokMSA_id:012077 D85469 Streptosporangium album IFO 13900. prokMSA_id:012075 U48993 Streptosporangium longisporum IFO 13141 . prokMSA_id:012093 U48999 Streptosporangium vulgare IFO 13985 . prokMSA_id:012074 X87319 str. SR 58. prokMSA_id:012076 X89934 Streptosporangium album DSM 43023 . prokMSA_id:012083 X89935 Streptosporangium amethystogenes subsp. amethystogenes DSM 43179 prokMSA_id:012089 X89936 Streptosporangium amethystogenes DSM 46128. prokMSA_id:012087 X89937 Streptosporangium "brasiliense" DSM 44109. prokMSA_id:012090 X89943 Streptosporangium "koreanum" DSM 44110. prokMSA_id:012091 X89944 Streptosporangium longisporum DSM 43180 . prokMSA_id:012088 X89947 Streptosporangium roseum DSM 43021 . prokMSA_id:012078 X89948 Streptosporangium roseum DSM 43871. prokMSA_id:012082 X89949 Streptosporangium roseum subsp. "incarnatum" DSM 44111. prokMSA_id:012084 X89950 Streptosporangium "rubrum" DSM 44095. prokMSA_id:012092 X89955 Streptosporangium vulgare DSM 43802 . prokMSA_id:012079 X89956 Streptosporangium vulgare DSM 46133. prokMSA_id:012081 X89957 Streptosporangium vulgare subsp. "antibioticum" DSM 44112. prokMSA_id:012073 X89958 Streptosporangium sp. DSM 43137. 2.30.1.8.3.3.004 OTU 1 seq prokMSA_id:012085 Z73386 clone Ep_T1.10. 2.30.1.8.3.3.999 poor quality 130 seqs prokMSA_id:098813 AB123056 Streptosporangium sp. 413B12 prokMSA_id:098345 AB123258 Streptosporangium sp. 419B07 prokMSA_id:098775 AB123305 Streptosporangium sp. 419G02 prokMSA_id:098851 AB123360 Streptosporangium sp. 424H05 prokMSA_id:095614 AB123517 Streptosporangium sp. 434C04 prokMSA_id:097415 AB123588 Streptosporangium sp. 303B09 prokMSA_id:096539 AB123613 Streptosporangium sp. 303D12 prokMSA_id:096116 AB123621 Streptosporangium sp. 303E09 prokMSA_id:098823 AB123628 Streptosporangium sp. 303F04 prokMSA_id:097368 AB123636 Streptosporangium sp. 303G03 prokMSA_id:097089 AB123640 Streptosporangium sp. 303G07 prokMSA_id:097716 AB123645 Streptosporangium sp. 303H01 prokMSA_id:096767 AB123647 Streptosporangium sp. 303H03 prokMSA_id:096741 AB123772 Streptosporangium sp. 310D07 prokMSA_id:096280 AB123789 Streptosporangium sp. 310F01 prokMSA_id:096826 AB123790 Streptosporangium sp. 310F02 prokMSA_id:097012 AB123791 Streptosporangium sp. 310F03 prokMSA_id:095785 AB123793 Streptosporangium sp. 310F05 prokMSA_id:096038 AB123795 Streptosporangium sp. 310F07 prokMSA_id:097948 AB123804 Streptosporangium sp. 310G04 prokMSA_id:097085 AB123805 Streptosporangium sp. 310G05 prokMSA_id:097580 AB123807 Streptosporangium sp. 310G08 prokMSA_id:096437 AB123808 Streptosporangium sp. 310G09 prokMSA_id:097617 AB123809 Streptosporangium sp. 310G10 prokMSA_id:098016 AB123812 Streptosporangium sp. 310H01 prokMSA_id:095676 AB123914 Streptosporangium sp. 316A07 prokMSA_id:096108 AB123918 Streptosporangium sp. 316A12 prokMSA_id:095273 AB123922 Streptosporangium sp. 316B04 prokMSA_id:096238 AB123923 Streptosporangium sp. 316B05 prokMSA_id:095486 AB123924 Streptosporangium sp. 316B07 prokMSA_id:095531 AB123934 Streptosporangium sp. 316C06 prokMSA_id:095596 AB123953 Streptosporangium sp. 316E07 prokMSA_id:096862 AB123963 Streptosporangium sp. 316F08 prokMSA_id:095938 AB123995 Streptosporangium sp. 319B03 prokMSA_id:098656 AB123996 Streptosporangium sp. 319B04 prokMSA_id:097487 AB123998 Streptosporangium sp. 319B06 prokMSA_id:097537 AB124001 Streptosporangium sp. 319B09 prokMSA_id:097126 AB124002 Streptosporangium sp. 319B10 prokMSA_id:098826 AB124005 Streptosporangium sp. 319C03 prokMSA_id:097895 AB124007 Streptosporangium sp. 319C06 prokMSA_id:095678 AB124008 Streptosporangium sp. 319C07 prokMSA_id:097901 AB124009 Streptosporangium sp. 319C08 prokMSA_id:096797 AB124012 Streptosporangium sp. 319C12 prokMSA_id:097705 AB124013 Streptosporangium sp. 319D01 prokMSA_id:097322 AB124014 Streptosporangium sp. 319D02 prokMSA_id:095680 AB124015 Streptosporangium sp. 319D03 prokMSA_id:096234 AB124016 Streptosporangium sp. 319D04 prokMSA_id:095755 AB124017 Streptosporangium sp. 319D05 prokMSA_id:098196 AB124019 Streptosporangium sp. 319D07 prokMSA_id:098454 AB124020 Streptosporangium sp. 319D08 prokMSA_id:097604 AB124021 Streptosporangium sp. 319D09 prokMSA_id:095843 AB124022 Streptosporangium sp. 319D10 prokMSA_id:096773 AB124025 Streptosporangium sp. 319E01 prokMSA_id:095766 AB124028 Streptosporangium sp. 319E04 prokMSA_id:098456 AB124034 Streptosporangium sp. 319E12 prokMSA_id:095359 AB124036 Streptosporangium sp. 319F03 prokMSA_id:095996 AB124038 Streptosporangium sp. 319F06 prokMSA_id:097384 AB124042 Streptosporangium sp. 319F10 prokMSA_id:098743 AB124052 Streptosporangium sp. 319G09 prokMSA_id:097291 AB124053 Streptosporangium sp. 319G12 prokMSA_id:098003 AB124054 Streptosporangium sp. 319H01 prokMSA_id:096512 AB124055 Streptosporangium sp. 319H02 prokMSA_id:095789 AB124056 Streptosporangium sp. 319H04 prokMSA_id:095612 AB124063 Streptosporangium sp. 322A05 prokMSA_id:098302 AB124066 Streptosporangium sp. 322A08 prokMSA_id:097852 AB124068 Streptosporangium sp. 322A11 prokMSA_id:096925 AB124069 Streptosporangium sp. 322A12 prokMSA_id:095671 AB124075 Streptosporangium sp. 322B07 prokMSA_id:095565 AB124078 Streptosporangium sp. 322B10 prokMSA_id:097078 AB124093 Streptosporangium sp. 322D03 prokMSA_id:096852 AB124095 Streptosporangium sp. 322D05 prokMSA_id:095605 AB124100 Streptosporangium sp. 322D10 prokMSA_id:098446 AB124101 Planotetraspora sp. 322D11 prokMSA_id:096533 AB124103 Streptosporangium sp. 322E02 prokMSA_id:097869 AB124104 Streptosporangium sp. 322E03 prokMSA_id:096227 AB124117 Streptosporangium sp. 322F04 prokMSA_id:098374 AB124118 Streptosporangium sp. 322F06 prokMSA_id:096400 AB124120 Streptosporangium sp. 322F08 prokMSA_id:098698 AB124121 Streptosporangium sp. 322F10 prokMSA_id:097761 AB124124 Streptosporangium sp. 322G02 prokMSA_id:095395 AB124139 Streptosporangium sp. 331A05 prokMSA_id:096220 AB124140 Streptosporangium sp. 331A06 prokMSA_id:098070 AB124145 Streptosporangium sp. 331B02 prokMSA_id:098621 AB124147 Streptosporangium sp. 331B04 prokMSA_id:098301 AB124148 Streptosporangium sp. 331B05 prokMSA_id:098271 AB124150 Streptosporangium sp. 331B07 prokMSA_id:095529 AB124154 Streptosporangium sp. 331B11 prokMSA_id:096111 AB124155 Streptosporangium sp. 331B12 prokMSA_id:096857 AB124156 Streptosporangium sp. 331C01 prokMSA_id:098620 AB124157 Streptosporangium sp. 331C02 prokMSA_id:097940 AB124170 Streptosporangium sp. 331D05 prokMSA_id:097213 AB124171 Streptosporangium sp. 331D06 prokMSA_id:097193 AB124173 Streptosporangium sp. 331D08 prokMSA_id:098449 AB124174 Streptosporangium sp. 331D09 prokMSA_id:095311 AB124175 Streptosporangium sp. 331D10 prokMSA_id:097701 AB124177 Streptosporangium sp. 331D12 prokMSA_id:095399 AB124178 Streptosporangium sp. 331E01 prokMSA_id:096215 AB124180 Streptosporangium sp. 331E03 prokMSA_id:095727 AB124181 Streptosporangium sp. 331E04 prokMSA_id:096610 AB124182 Streptosporangium sp. 331E05 prokMSA_id:098859 AB124184 Streptosporangium sp. 331E07 prokMSA_id:096494 AB124185 Streptosporangium sp. 331E08 prokMSA_id:096680 AB124186 Streptosporangium sp. 331E09 prokMSA_id:097693 AB124187 Streptosporangium sp. 331E10 prokMSA_id:097803 AB124188 Streptosporangium sp. 331E11 prokMSA_id:098579 AB124204 Streptosporangium sp. 331G04 prokMSA_id:098834 AB124207 Streptosporangium sp. 331G07 prokMSA_id:095924 AB124224 Streptosporangium sp. 334A04 prokMSA_id:095754 AB124233 Streptosporangium sp. 334B05 prokMSA_id:098422 AB124249 Streptosporangium sp. 334C11 prokMSA_id:097057 AB124264 Streptosporangium sp. 334E05 prokMSA_id:097860 AB124275 Streptosporangium sp. 334F06 prokMSA_id:097324 AB124277 Streptosporangium sp. 334F08 prokMSA_id:097771 AB124326 Streptosporangium sp. 337C03 prokMSA_id:098114 AB124343 Streptosporangium sp. 337D09 prokMSA_id:096478 AB124357 Streptosporangium sp. 337E12 prokMSA_id:095774 AB124360 Streptosporangium sp. 337F03 prokMSA_id:096197 AB124387 Streptosporangium sp. 337H11 prokMSA_id:096945 AB124439 Streptosporangium sp. 340E12 prokMSA_id:095655 AB124447 Streptosporangium sp. 340F09 prokMSA_id:096224 AB124486 Streptosporangium sp. 343B08 prokMSA_id:098641 AB124490 Streptosporangium sp. 343B12 prokMSA_id:098207 AB124500 Streptosporangium sp. 343C10 prokMSA_id:097390 AB124507 Streptosporangium sp. 343D05 prokMSA_id:097602 AB124536 Streptosporangium sp. 343G03 prokMSA_id:060109 AJ427656 actinomycete clone ACT-C6 prokMSA_id:060100 AJ427667 actinomycete clone STP-C6 prokMSA_id:091685 AY330265 actinobacterium clone g99-H1 prokMSA_id:012086 Z73388 clone Ep_T1.179. prokMSA_id:012094 Z73407 clone Ep_T1.35. 2.30.1.8.3.4 STS.VIOLACEOCHROMOGENES_SUBGROUP 4 seqs 2.30.1.8.3.4.001 OTU 4 seqs prokMSA_id:031777 AF131615 Streptosporangium sp. IM-6654 prokMSA_id:012097 U48997 Streptosporangium violaceochromogenes JCM 3281 . prokMSA_id:012099 X89951 Streptosporangium violaceochromogenes DSM 43849 . prokMSA_id:012098 X89952 Streptosporangium violaceochromogenes DSM 43872. 2.30.1.8.3.5 STS.CARNEUM_SUBGROUP 3 seqs 2.30.1.8.3.5.001 OTU 1 seq prokMSA_id:012101 AF191736 Streptosporangium 5866 str. 5866. 2.30.1.8.3.5.002 OTU 1 seq prokMSA_id:012100 X89938 Streptosporangium carneum DSM 44125 . 2.30.1.8.3.5.999 poor quality 1 seq prokMSA_id:098074 AB123717 Streptosporangium sp. 306G02 2.30.1.8.3.6 PMS.PARONTOSPORA_SUBGROUP 10 seqs 2.30.1.8.3.6.001 OTU 1 seq prokMSA_id:012104 AB028655 Planomonospora venezuelensis JCM 3167. 2.30.1.8.3.6.002 OTU 5 seqs prokMSA_id:012103 AB028653 Planomonospora parontospora subsp. antibiotica JCM 3094. prokMSA_id:046051 AB062382 Planomonospora sphaerica prokMSA_id:052948 AF131477 Planomonospora sp. IM-7023 prokMSA_id:012102 D85495 Planomonospora parontospora subsp. parontospora IFO 13880 . prokMSA_id:072045 D85495 Planomonospora parontospora strain IFO13880 2.30.1.8.3.6.003 OTU 1 seq prokMSA_id:017513 AB062380 Clavisporangium rectum 2.30.1.8.3.6.004 OTU 2 seqs prokMSA_id:060076 AJ427693 actinomycete clone TMM-B7 prokMSA_id:060075 AJ427694 actinomycete clone TMM-B8 2.30.1.8.3.6.999 poor quality 1 seq prokMSA_id:060124 AJ427642 actinomycete clone ACT-B1 2.30.1.8.3.7 STS.VIRIDIALBUM_SUBGROUP 9 seqs 2.30.1.8.3.7.001 OTU 2 seqs prokMSA_id:012106 U48998 Streptosporangium viridialbum JCM 3027 . prokMSA_id:012105 X89953 Streptosporangium viridialbum DSM 43801 . 2.30.1.8.3.7.999 poor quality 7 seqs prokMSA_id:097583 AB123062 Streptosporangium sp. 413C07 prokMSA_id:098054 AB123365 Streptosporangium sp. 424H10 prokMSA_id:098405 AB124086 Streptosporangium sp. 322C07 prokMSA_id:098400 AB124088 Streptosporangium sp. 322C09 prokMSA_id:097252 AB124126 Streptosporangium sp. 322G04 prokMSA_id:098299 AB124252 Streptosporangium sp. 334D03 prokMSA_id:097688 AB124288 Streptosporangium sp. 334G09 2.30.1.8.3.8 PBS.LONGISPORA_SUBGROUP 36 seqs 2.30.1.8.3.8.001 OTU 1 seq prokMSA_id:012109 AB028654 Planobispora rosea JCM 3166. 2.30.1.8.3.8.002 OTU 2 seqs prokMSA_id:012108 D85494 Planobispora longispora IFO 13918. prokMSA_id:073964 D85494 Planobispora longispora strain IFO13918 2.30.1.8.3.8.003 OTU 3 seqs prokMSA_id:050123 AF131639 Streptosporangiaceae str. IM-7097 prokMSA_id:046890 AF131640 Streptosporangiaceae str. IM-7193 prokMSA_id:012107 X89939 Streptosporangium "cinnabarium" DSM 44094. 2.30.1.8.3.8.004 OTU 1 seq prokMSA_id:016975 AF131638 Streptosporangiaceae str. IM-6876 2.30.1.8.3.8.005 OTU 1 seq prokMSA_id:045962 AB043101 Nonomuraea roseoviolacea 2.30.1.8.3.8.999 poor quality 28 seqs prokMSA_id:096912 AB122904 Streptosporangium sp. 387G06 prokMSA_id:095439 AB123034 Streptosporangium sp. 411G12 prokMSA_id:095269 AB123053 Nonomuraea sp. 413B06 prokMSA_id:096462 AB123057 Streptosporangium sp. 413C02 prokMSA_id:098174 AB123134 Streptosporangium sp. 415E06 prokMSA_id:098877 AB123230 Streptosporangium sp. 418G04 prokMSA_id:096411 AB123257 Streptosporangium sp. 419B06 prokMSA_id:097738 AB123259 Streptosporangium sp. 419B08 prokMSA_id:097240 AB123262 Streptosporangium sp. 419B11 prokMSA_id:096107 AB123264 Streptosporangium sp. 419C02 prokMSA_id:097455 AB123266 Streptosporangium sp. 419C04 prokMSA_id:097442 AB123287 Streptosporangium sp. 419E04 prokMSA_id:095731 AB123447 Streptosporangium sp. 431B11 prokMSA_id:098316 AB123519 Streptosporangium sp. 434C09 prokMSA_id:095732 AB123654 Streptosporangium sp. 303H10 prokMSA_id:098815 AB124018 Streptosporangium sp. 319D06 prokMSA_id:095476 AB124048 Herbidospora sp. 319G05 prokMSA_id:096191 AB124059 Streptosporangium sp. 319H09 prokMSA_id:097192 AB124083 Streptosporangium sp. 322C04 prokMSA_id:097418 AB124092 Acrocarpospora sp. 322D02 prokMSA_id:098764 AB124097 Acrocarpospora sp. 322D07 prokMSA_id:096737 AB124149 Streptosporangium sp. 331B06 prokMSA_id:098227 AB124165 Streptosporangium sp. 331C10 prokMSA_id:097436 AB124251 Streptosporangium sp. 334D02 prokMSA_id:097724 AB124378 Streptosporangium sp. 337G10 prokMSA_id:097839 AB124488 Streptosporangium sp. 343B10 prokMSA_id:072369 AF107512 SY2-69 prokMSA_id:021589 AJ286741 Arthrobacter sp. isolate DGGE bands R & r 2.30.1.8.3.9 NM.SALMONEA_SUBGROUP 135 seqs 2.30.1.8.3.9.004 OTU 1 seq prokMSA_id:012119 U48845 Nonomuria ferruginea str. 487-2 IFO 14094 . 2.30.1.8.3.9.012 OTU 3 seqs prokMSA_id:021050 AF131465 Nonomuraea sp. IM-6230 prokMSA_id:012113 D85491 Nonomuria pusilla IFO 14684 . prokMSA_id:012112 U48978 Nonomuria pusilla IFO 14684 . 2.30.1.8.3.9.017 OTU 1 seq prokMSA_id:019369 AB039960 Nonomuraea roseoviolacea strain:SF 2303 2.30.1.8.3.9.018 OTU 1 seq prokMSA_id:024563 AF277200 Nonomuraea rubra 2.30.1.8.3.9.020 OTU 1 seq prokMSA_id:041992 AF277196 Nonomuraea asiatica 2.30.1.8.3.9.021 OTU 1 seq prokMSA_id:073039 AF302078 Nonomuraea terranata 2.30.1.8.3.9.023 OTU 51 seqs prokMSA_id:012125 AB006156 Sebekia benihana IFO 14309. prokMSA_id:012116 AB006158 Cathayosporangium alboflavum IFO 16009. prokMSA_id:012117 AB018787 Nonomuraea longicatena NRRL 15532. prokMSA_id:025422 AB039959 Nonomuraea roseoviolacea strain:IFO 14098T prokMSA_id:018645 AB039961 Nonomuraea roseoviolacea strain:IFO 15903T prokMSA_id:031237 AF131452 Nonomuraea sp. IM-0194 prokMSA_id:016815 AF131453 Nonomuraea sp. IM-0975 prokMSA_id:024360 AF131454 Nonomuraea sp. IM-0984 prokMSA_id:054454 AF131455 Nonomuraea sp. IM-1409 prokMSA_id:039825 AF131456 Nonomuraea sp. IM-1682 prokMSA_id:028142 AF131457 Nonomuraea sp. IM-1930 prokMSA_id:034353 AF131458 Nonomuraea sp. IM-1968 prokMSA_id:021970 AF131459 Nonomuraea sp. IM-1996 prokMSA_id:032863 AF131460 Nonomuraea sp. IM-2156 prokMSA_id:034684 AF131461 Nonomuraea sp. IM-2224 prokMSA_id:030470 AF131462 Nonomuraea sp. IM-2637 prokMSA_id:049025 AF131463 Nonomuraea sp. IM-3235 prokMSA_id:030955 AF131464 Nonomuraea sp. IM-3385 prokMSA_id:017069 AF131466 Nonomuraea sp. IM-6588 prokMSA_id:018460 AF131467 Nonomuraea sp. IM-6794 prokMSA_id:027043 AF131468 Nonomuraea sp. IM-6911 prokMSA_id:018559 AF131469 Nonomuraea sp. IM-6942 prokMSA_id:023212 AF131470 Nonomuraea sp. IM-6943 prokMSA_id:017188 AF131471 Nonomuraea sp. IM-6949 prokMSA_id:054973 AF131472 Nonomuraea sp. IM-6966 prokMSA_id:023470 AF131473 Nonomuraea sp. IM-7031 prokMSA_id:039892 AF131474 Nonomuraea sp. IM-7062 prokMSA_id:028523 AF131475 Nonomuraea sp. IM-7078 prokMSA_id:039611 AF131476 Nonomuraea sp. IM-7116 prokMSA_id:025272 AF135374 Microtetraspora sp. ATCC39727 prokMSA_id:020028 AF223349 Pseudonocardiaceae str. PA83 complete prokMSA_id:074780 AF277197 Nonomuraea latina prokMSA_id:052334 AF277201 Nonomuraea turkmeniaca prokMSA_id:029802 AJ269555 Nonomuraea africana strain DSM 43748 prokMSA_id:074555 AJ278220 Sebekia benihana strain DSM 44320 prokMSA_id:031484 AJ278221 Nonomuraea roseola strain DSM 43767T prokMSA_id:072465 AJ294350 Sebekia benihana strain NRRL 11111 prokMSA_id:040820 AJ404230 Nonomuraea recticatena strain DSM 43937T prokMSA_id:094263 AJ582011 Nonomuraea sp. ATCC 39727 strain ATCC 39727 prokMSA_id:047254 AY039254 Nonomuraea aurea prokMSA_id:048988 AY039255 Nonomuraea rubescens prokMSA_id:012122 U48842 Nonomuria africana IFO 14745 . prokMSA_id:012114 U48843 Nonomuria angiospora IFO 13155 . prokMSA_id:012121 U48844 Nonomuria fastidiosa IFO 14680 . prokMSA_id:012111 U48975 Nonomuria helvata IFO 14681 . prokMSA_id:012120 U48977 Nonomuria polychroma IFO 14345 . prokMSA_id:012124 U48979 Nonomuria recticatena IFO 14525 . prokMSA_id:012123 U48980 Nonomuria roseola IFO 14685 . prokMSA_id:012118 U48982 Nonomuria salmonea IFO 14687 . prokMSA_id:012110 U48983 Nonomuria spiralis IFO 14097 . prokMSA_id:012115 X97892 Nonomuria salmonea DSM 43678 . 2.30.1.8.3.9.999 poor quality 76 seqs prokMSA_id:096646 AB122781 Nonomuraea sp. 384A03 prokMSA_id:098745 AB122782 Nonomuraea sp. 384A04 prokMSA_id:096252 AB122848 Nonomuraea sp. 384H05 prokMSA_id:095223 AB122850 Nonomuraea sp. 384H09 prokMSA_id:096794 AB122858 Nonomuraea sp. 387A08 prokMSA_id:095286 AB122882 Nonomuraea sp. 387E01 prokMSA_id:098311 AB122906 Nonomuraea sp. 387G08 prokMSA_id:095944 AB122914 Nonomuraea sp. 387H05 prokMSA_id:096069 AB122939 Nonomuraea sp. 410B12 prokMSA_id:095317 AB122966 Nonomuraea sp. 410F12 prokMSA_id:096064 AB123010 Nonomuraea sp. 411E10 prokMSA_id:097559 AB123036 Nonomuraea sp. 411H03 prokMSA_id:096702 AB123040 Nonomuraea sp. 411H09 prokMSA_id:095890 AB123061 Nonomuraea sp. 413C06 prokMSA_id:097461 AB123063 Nonomuraea sp. 413C09 prokMSA_id:097905 AB123064 Nonomuraea sp. 413C11 prokMSA_id:096088 AB123065 Nonomuraea sp. 413D02 prokMSA_id:096453 AB123070 Nonomuraea sp. 413E07 prokMSA_id:096397 AB123082 Nonomuraea sp. 413G03 prokMSA_id:095346 AB123085 Nonomuraea sp. 413G07 prokMSA_id:096231 AB123090 Nonomuraea sp. 413H05 prokMSA_id:095340 AB123095 Nonomuraea sp. 413H11 prokMSA_id:097098 AB123104 Nonomuraea sp. 415B05 prokMSA_id:098361 AB123172 Nonomuraea sp. 418A03 prokMSA_id:096742 AB123209 Nonomuraea sp. 418D11 prokMSA_id:095397 AB123254 Nonomuraea sp. 419B03 prokMSA_id:096212 AB123255 Nonomuraea sp. 419B04 prokMSA_id:097717 AB123261 Nonomuraea sp. 419B10 prokMSA_id:096052 AB123265 Nonomuraea sp. 419C03 prokMSA_id:098045 AB123280 Nonomuraea sp. 419D07 prokMSA_id:098667 AB123299 Nonomuraea sp. 419F05 prokMSA_id:098243 AB123321 Nonomuraea sp. 424A10 prokMSA_id:097802 AB123324 Nonomuraea sp. 424B05 prokMSA_id:097446 AB123325 Nonomuraea sp. 424B06 prokMSA_id:096350 AB123326 Nonomuraea sp. 424B08 prokMSA_id:095292 AB123327 Nonomuraea sp. 424B11 prokMSA_id:098151 AB123328 Nonomuraea sp. 424C05 prokMSA_id:097076 AB123329 Nonomuraea sp. 424C09 prokMSA_id:096193 AB123331 Nonomuraea sp. 424C11 prokMSA_id:098372 AB123333 Nonomuraea sp. 424D06 prokMSA_id:096972 AB123334 Nonomuraea sp. 424D08 prokMSA_id:098702 AB123335 Nonomuraea sp. 424D09 prokMSA_id:096748 AB123336 Nonomuraea sp. 424D11 prokMSA_id:096528 AB123338 Nonomuraea sp. 424E01 prokMSA_id:095683 AB123339 Nonomuraea sp. 424E03 prokMSA_id:097481 AB123342 Nonomuraea sp. 424E09 prokMSA_id:097319 AB123343 Nonomuraea sp. 424E10 prokMSA_id:095643 AB123344 Nonomuraea sp. 424E11 prokMSA_id:096127 AB123345 Nonomuraea sp. 424F01 prokMSA_id:098245 AB123346 Nonomuraea sp. 424F02 prokMSA_id:096393 AB123364 Nonomuraea sp. 424H09 prokMSA_id:096576 AB123366 Nonomuraea sp. 424H12 prokMSA_id:095219 AB123367 Nonomuraea sp. 428A04 prokMSA_id:097307 AB123368 Nonomuraea sp. 428A09 prokMSA_id:096055 AB123369 Nonomuraea sp. 428A10 prokMSA_id:096615 AB123371 Nonomuraea sp. 428A12 prokMSA_id:096837 AB123373 Nonomuraea sp. 428B02 prokMSA_id:098203 AB123382 Nonomuraea sp. 428C01 prokMSA_id:097005 AB123383 Nonomuraea sp. 428C02 prokMSA_id:097162 AB123384 Nonomuraea sp. 428C03 prokMSA_id:097469 AB123446 Nonomuraea sp. 431B10 prokMSA_id:095388 AB123448 Nonomuraea sp. 431B12 prokMSA_id:098588 AB123449 Nonomuraea sp. 431C01 prokMSA_id:095201 AB123457 Nonomuraea sp. 431C11 prokMSA_id:095249 AB123460 Nonomuraea sp. 431D02 prokMSA_id:095221 AB123464 Nonomuraea sp. 431D06 prokMSA_id:096026 AB123480 Nonomuraea sp. 431F04 prokMSA_id:095692 AB123542 Nonomuraea sp. 434E11 prokMSA_id:096730 AB123626 Nonomuraea sp. 303F02 prokMSA_id:095804 AB123776 Acrocarpospora sp. 310D11 prokMSA_id:095735 AB124071 Nonomuraea sp. 322B02 prokMSA_id:096327 AB124072 Nonomuraea sp. 322B04 prokMSA_id:097861 AB124135 Nonomuraea sp. 322H07 prokMSA_id:069994 AJ427662 actinomycete clone STP-C1 prokMSA_id:072946 AJ427663 actinomycete clone STP-C2 prokMSA_id:061375 AY043869 actinobacterium clone SMW4.115WL 2.30.1.8.3.10 TMMS.CHROMOGENA_SUBGROUP 11 seqs 2.30.1.8.3.10.001 OTU 7 seqs prokMSA_id:012126 AF002261 Thermomonospora chromogena str. Agre 577 JCM 6244 . prokMSA_id:012132 AF028246 Thermomonospora chromogena ATCC 43196 . prokMSA_id:012127 AF116558 Thermomonospora chromogena ATCC 43196 . prokMSA_id:012129 AF116560 Thermomonospora chromogena ATCC 43196 . prokMSA_id:012130 AF116561 Thermomonospora chromogena ATCC 43196 . prokMSA_id:012131 AF116562 Thermomonospora chromogena ATCC 43196 . prokMSA_id:054694 AF116563 Thermomonospora chromogena strain ATCC43196 rrnF operon 23S 5S and complete 2.30.1.8.3.10.002 OTU 1 seq prokMSA_id:012128 AF116559 Thermomonospora chromogena ATCC 43196 . 2.30.1.8.3.10.003 OTU 2 seqs prokMSA_id:025544 AF345861 Streptosporangiaceae str. KACC 20141 prokMSA_id:034539 AY039253 Krassilnikovia flexuosa 2.30.1.8.3.10.999 poor quality 1 seq prokMSA_id:062281 AY124437 actinobacterium clone SDb05 2.30.1.8.3.11 STS.CORRUGATUM_SUBGROUP 18 seqs 2.30.1.8.3.11.003 OTU 7 seqs prokMSA_id:048138 AF131370 Herbidospora sp. IM-7096 prokMSA_id:036922 AF131610 Streptosporangium sp. IM-0216 prokMSA_id:043034 AF131611 Streptosporangium sp. IM-6156 prokMSA_id:012137 D85485 Herbidospora cretacea str. K-319 IFO 15474. prokMSA_id:012134 U48991 Streptosporangium corrugatum IFO 13972 . prokMSA_id:012136 X89940 Streptosporangium claviforme DSM 44127 . prokMSA_id:012135 X89941 Streptosporangium corrugatum DSM 43316 . 2.30.1.8.3.11.004 OTU 1 seq prokMSA_id:012133 X70427 Streptosporangium corrugatum. 2.30.1.8.3.11.005 OTU 1 seq prokMSA_id:036455 AB006174 actinomycete strain:R-31 2.30.1.8.3.11.006 OTU 1 seq prokMSA_id:039163 AF131612 Streptosporangium sp. IM-6284 2.30.1.8.3.11.999 poor quality 8 seqs prokMSA_id:030729 AB025318 Acrocarpaspora pleiomorpha prokMSA_id:098571 AB122851 Planotetraspora sp. 384H10 prokMSA_id:095333 AB123069 Planotetraspora sp. 413D11 prokMSA_id:098827 AB123096 Planotetraspora sp. 415A06 prokMSA_id:096504 AB123182 Planotetraspora sp. 418B02 prokMSA_id:096477 AB123285 Planotetraspora sp. 419E02 prokMSA_id:096652 AB123292 Planotetraspora sp. 419E09 prokMSA_id:097055 AB123777 Herbidospora sp. 310D12 2.30.1.8.3.12 MTT.GLAUCA_SUBGROUP 36 seqs 2.30.1.8.3.12.001 OTU 13 seqs prokMSA_id:069415 AB006175 actinomycete strain IFO16010 prokMSA_id:023223 AB062383 Microtetraspora malaysiensis strain:H47-7 prokMSA_id:049520 AB062384 Microtetraspora malaysiensis strain:Y1-5-3 prokMSA_id:031910 AB062385 Microtetraspora malaysiensis strain:Y25-12 prokMSA_id:019184 AF131433 Microtetraspora sp. IM-3183 prokMSA_id:020000 AF131434 Microtetraspora sp. IM-6228 prokMSA_id:025917 AF131435 Microtetraspora sp. IM-7010 prokMSA_id:033372 AF131436 Microtetraspora sp. IM-7249 prokMSA_id:012142 D85490 Microtetraspora glauca IFO 14761 . prokMSA_id:012138 U48973 Microtetraspora fusca IFO 13915 . prokMSA_id:012140 U48974 Microtetraspora glauca IFO 14761 . prokMSA_id:012139 U48976 Microtetraspora niveoalba IFO 15239 . prokMSA_id:012141 X97891 Microtetraspora glauca DSM 43311 . 2.30.1.8.3.12.999 poor quality 23 seqs prokMSA_id:095511 AB122870 Microtetraspora sp. 387C11 prokMSA_id:098194 AB122872 Microtetraspora sp. 387D03 prokMSA_id:096875 AB122873 Microtetraspora sp. 387D04 prokMSA_id:097666 AB122899 Microtetraspora sp. 387G01 prokMSA_id:098722 AB123055 Microtetraspora sp. 413B09 prokMSA_id:096391 AB123086 Microtetraspora sp. 413G08 prokMSA_id:097985 AB123087 Microtetraspora sp. 413G12 prokMSA_id:097314 AB123088 Microtetraspora sp. 413H02 prokMSA_id:095694 AB123089 Microtetraspora sp. 413H04 prokMSA_id:095535 AB123091 Microtetraspora sp. 413H06 prokMSA_id:095818 AB123092 Microtetraspora sp. 413H08 prokMSA_id:095264 AB123205 Microtetraspora sp. 418D04 prokMSA_id:098398 AB123206 Microtetraspora sp. 418D05 prokMSA_id:095492 AB123213 Microtetraspora sp. 418E03 prokMSA_id:097917 AB123225 Microtetraspora sp. 418F08 prokMSA_id:098753 AB123308 Microtetraspora sp. 419G05 prokMSA_id:098666 AB123313 Microtetraspora sp. 419H03 prokMSA_id:097096 AB123359 Microtetraspora sp. 424H03 prokMSA_id:096158 AB123415 Microtetraspora sp. 428F11 prokMSA_id:097483 AB123438 Microtetraspora sp. 431A12 prokMSA_id:096442 AB123468 Microtetraspora sp. 431D11 prokMSA_id:098479 AB123516 Microtetraspora sp. 434C02 prokMSA_id:095523 AB124473 Microtetraspora sp. 343A05 2.30.1.8.3.13 MBSP.ROSEA_SUBGROUP 73 seqs 2.30.1.8.3.13.011 OTU 20 seqs prokMSA_id:012146 AB018046 Microbispora corallina str. DF-32. prokMSA_id:012151 AF002266 Microbispora mesophila str. T-1 JCM 3151 . prokMSA_id:019298 AF131381 Microbispora sp. IM-2876 prokMSA_id:021191 AF131382 Microbispora sp. IM-2878 prokMSA_id:019642 AF131383 Microbispora sp. IM-3022 prokMSA_id:029426 AF131384 Microbispora sp. IM-7541 prokMSA_id:052041 AF131385 Microbispora sp. IM-7566 prokMSA_id:023064 AF131478 Planotetraspora sp. IM-6232 prokMSA_id:020526 AF223346 Streptosporangiaceae str. PA154 complete prokMSA_id:030485 AF223347 Streptosporangiaceae str. PA147 complete prokMSA_id:067226 AF492842 Microbispora sp. V2 prokMSA_id:012143 D85496 Planotetraspora mira IFO 15435 . prokMSA_id:012144 D86936 Microbispora rosea subsp. rosea IFO 14044 . prokMSA_id:012148 U48984 Microbispora rosea subsp. aerata ATCC 15448 . prokMSA_id:012145 U48985 Microbispora rosea subsp. rosea ATCC 33326 . prokMSA_id:012147 U48986 Microbispora rosea subsp. rosea ATCC 27098 . prokMSA_id:012149 U48987 Microbispora rosea subsp. rosea ATCC 27099 . prokMSA_id:012150 U48988 Microbispora rosea subsp. rosea JCM 3021 . prokMSA_id:012152 U48989 Microbispora rosea subsp. rosea IFO 14876 . prokMSA_id:012153 U48990 Microbispora rosea subsp. rosea IFO 14041 . 2.30.1.8.3.13.999 poor quality 53 seqs prokMSA_id:046673 AB054927 Microbispora sp. 1724 prokMSA_id:098394 AB122871 Planotetraspora sp. 387D02 prokMSA_id:098679 AB122969 Microbispora sp. 410G04 prokMSA_id:097204 AB122978 Microbispora sp. 411A05 prokMSA_id:098767 AB122996 Microbispora sp. 411C12 prokMSA_id:097310 AB123005 Microbispora sp. 411E05 prokMSA_id:098192 AB123083 Microbispora sp. 413G05 prokMSA_id:096505 AB123137 Microbispora sp. 415E10 prokMSA_id:096089 AB123200 Microbispora sp. 418C09 prokMSA_id:097665 AB123222 Microbispora sp. 418F04 prokMSA_id:096703 AB123268 Planotetraspora sp. 419C06 prokMSA_id:096497 AB123281 Microbispora sp. 419D10 prokMSA_id:095525 AB123286 Microbispora sp. 419E03 prokMSA_id:096071 AB123288 Microbispora sp. 419E05 prokMSA_id:097075 AB123296 Microbispora sp. 419F01 prokMSA_id:097398 AB123352 Microbispora sp. 424F12 prokMSA_id:097851 AB123453 Microbispora sp. 431C06 prokMSA_id:095417 AB123608 Planotetraspora sp. 303D06 prokMSA_id:098481 AB123619 Microbispora sp. 303E06 prokMSA_id:098090 AB123800 Planotetraspora sp. 310F12 prokMSA_id:097801 AB123917 Planotetraspora sp. 316A11 prokMSA_id:095672 AB123919 Planotetraspora sp. 316B01 prokMSA_id:096500 AB123921 Planotetraspora sp. 316B03 prokMSA_id:096113 AB123930 Planotetraspora sp. 316C01 prokMSA_id:097872 AB123937 Planotetraspora sp. 316C09 prokMSA_id:097125 AB123938 Planotetraspora sp. 316C10 prokMSA_id:095277 AB123939 Planotetraspora sp. 316D01 prokMSA_id:096312 AB123940 Planotetraspora sp. 316D02 prokMSA_id:097228 AB123941 Planotetraspora sp. 316D03 prokMSA_id:097816 AB123944 Planotetraspora sp. 316D07 prokMSA_id:096531 AB123964 Planotetraspora sp. 316F10 prokMSA_id:095556 AB123975 Planotetraspora sp. 316G10 prokMSA_id:095257 AB124094 Planotetraspora sp. 322D04 prokMSA_id:097179 AB124114 Planotetraspora sp. 322F01 prokMSA_id:098155 AB124115 Planotetraspora sp. 322F02 prokMSA_id:095331 AB124143 Planotetraspora sp. 331A09 prokMSA_id:098185 AB124159 Planotetraspora sp. 331C04 prokMSA_id:096310 AB124179 Planotetraspora sp. 331E02 prokMSA_id:098545 AB124236 Planotetraspora sp. 334B08 prokMSA_id:095497 AB124257 Planotetraspora sp. 334D09 prokMSA_id:096540 AB124260 Planotetraspora sp. 334D12 prokMSA_id:098002 AB124301 Planotetraspora sp. 334H10 prokMSA_id:096311 AB124480 Planotetraspora sp. 343B02 prokMSA_id:095186 AB124481 Planotetraspora sp. 343B03 prokMSA_id:096588 AB124487 Planotetraspora sp. 343B09 prokMSA_id:098677 AB124510 Planotetraspora sp. 343D08 prokMSA_id:098710 AB124511 Planotetraspora sp. 343D09 prokMSA_id:097383 AB124521 Planotetraspora sp. 343E09 prokMSA_id:073961 AJ427664 actinomycete clone STP-C3 prokMSA_id:071497 AJ427665 actinomycete clone STP-C4 prokMSA_id:060101 AJ427666 actinomycete clone STP-C5 prokMSA_id:066861 AY096151 clone F2-3 prokMSA_id:075678 AY148073 Streptosporangiacae EN2 2.30.1.9 ARTHROBACTER_SUBDIVISION 2818 seqs 2.30.1.9.1 ARTHROBACTER_AND_RELATIVES 2288 seqs 2.30.1.9.1.1 LEUCOBACTER_ASSEMBLAGE 86 seqs 2.30.1.9.1.1.001 OTU 1 seq prokMSA_id:012168 AF170739 Agrococcus QSSC2-2 str. QSSC2-2. 2.30.1.9.1.1.002 OTU 4 seqs prokMSA_id:061996 AJ244681 Corynebacterium cf. aquaticum V4.BO.26 marine isolate prokMSA_id:070211 AY145536 Microbacteriaceae GP-8 prokMSA_id:091847 AY345524 clone W1A-C08 prokMSA_id:012167 X92492 Agrococcus jenensis DSM 9580 . 2.30.1.9.1.1.003 OTU 1 seq prokMSA_id:012166 U31489 str. S10. 2.30.1.9.1.1.004 OTU 1 seq prokMSA_id:012165 D17751 Leucobacter komagatae. 2.30.1.9.1.1.005 OTU 3 seqs prokMSA_id:042597 AB007419 Leucobacter komagatae prokMSA_id:012164 AB012594 unnamed organism. prokMSA_id:012163 D45063 Leucobacter komagatae. 2.30.1.9.1.1.007 OTU 1 seq prokMSA_id:012160 AF050573 clone WCHB1-08. 2.30.1.9.1.1.008 OTU 1 seq prokMSA_id:012155 M87484 Tropheryma whippelii str. patient 1. 2.30.1.9.1.1.009 OTU 1 seq prokMSA_id:024450 AJ292034 actinobacterium d13 strain d13 2.30.1.9.1.1.010 OTU 1 seq prokMSA_id:035127 AF323267 Gram positive W5P-3 2.30.1.9.1.1.011 OTU 2 seqs prokMSA_id:045333 Y14595 Nostocoida limicola II strain Ver1 prokMSA_id:049131 Y14596 Nostocoida limicola II strain Ver2 2.30.1.9.1.1.013 OTU 16 seqs prokMSA_id:012161 AB016985 Clavibacter xyli subsp. cynodontis str. TB1A JCM 9733. prokMSA_id:049214 AB028940 Microbacteriaceae str. DB102 prokMSA_id:074625 AB028941 Microbacteriaceae str. DB103 prokMSA_id:078023 AB074617 actinobacterium clone:APe2_47 prokMSA_id:046404 AF116342 Leifsonia poae prokMSA_id:073757 AF531474 Naphthalene-utilizing IS1 prokMSA_id:073704 AJ244675 Leifsonia sp. V4.MO.14 marine isolate prokMSA_id:076764 AJ518815 Leifsonia aquatica isolate B15 prokMSA_id:076971 AJ518816 Leifsonia aquatica isolate B21 prokMSA_id:075782 AJ518823 Leifsonia aquatica isolate B13 prokMSA_id:075519 AJ518824 Leifsonia aquatica isolate B14 prokMSA_id:066837 AY096178 clone F2-56 prokMSA_id:012158 D45057 Corynebacterium "aquaticum" JCM 1368. prokMSA_id:012159 M60935 Clavibacter xyli subsp. cynodontis str. Cxc. prokMSA_id:012162 U96183 Clavibacter xyli subsp. xyli str. F1A. prokMSA_id:012157 X77450 Corynebacterium "aquaticum" DSM 20146. 2.30.1.9.1.1.014 OTU 9 seqs prokMSA_id:080269 AF468438 Arctic sea ice ARK10062 prokMSA_id:069434 AF513392 Agreia sp. 5-1 prokMSA_id:069507 AF513393 Agreia sp. 37-4 prokMSA_id:056556 AF539697 Marine KMM3673 prokMSA_id:060321 AF539698 Marine KMM3670 prokMSA_id:060322 AF539699 Marine KMM3928 prokMSA_id:072839 AJ244680 Clavibacter-like sp. V4.BE.53 marine isolate prokMSA_id:081180 AY167331 Actinobacterium ANT9067 prokMSA_id:080318 AY188942 Marine P_wp0234 2.30.1.9.1.1.015 OTU 1 seq prokMSA_id:048634 AF142943 PENDANT-31 2.30.1.9.1.1.016 OTU 1 seq prokMSA_id:061927 AJ292036 actinobacterium d8 strain d8 2.30.1.9.1.1.017 OTU 1 seq prokMSA_id:064159 AF477860 clone 28-UMH 8% pond 2.30.1.9.1.1.018 OTU 2 seqs prokMSA_id:067357 AJ438585 Leifsonia rubeus strain CMS 76r prokMSA_id:066699 AJ459101 Rhodoglobus vestali strain LV3 2.30.1.9.1.1.019 OTU 1 seq prokMSA_id:067358 AJ438586 Leifsonia aureus strain CMS 81 2.30.1.9.1.1.020 OTU 1 seq prokMSA_id:091136 AY345361 Ph2 2.30.1.9.1.1.021 OTU 1 seq prokMSA_id:091918 AY345365 Ph1_Loihi 2.30.1.9.1.1.022 OTU 1 seq prokMSA_id:097013 AY378265 Permafrost DT-IQ19 2.30.1.9.1.1.999 poor quality 36 seqs prokMSA_id:042021 AB054903 Clavibacter sp. 1033 prokMSA_id:091476 AB101568 Microbacteriaceae GF25 prokMSA_id:049533 AF018010 T27104c prokMSA_id:019263 AF018011 T27107c prokMSA_id:051553 AF078334 Grassland soil clone sl1_107 prokMSA_id:037766 AF141463 actinomycete clone CRE-FL43 prokMSA_id:052735 AF141476 actinomycete clone CRE-FL60 prokMSA_id:040375 AF143751 actinomycete clone A8 prokMSA_id:031808 AF226191 Maize root ZmrIs35 prokMSA_id:020542 AF299364 Leifsonia aquatica prokMSA_id:075801 AF431555 actinobacterium clone S52.21PG prokMSA_id:066653 AF432244 Leifsonia sp. Ellin419 prokMSA_id:066643 AF432255 Leifsonia sp. Ellin432 prokMSA_id:061231 AF432669 clone NOS7.7WL prokMSA_id:064174 AF477837 prokaryote isolate DGGE Band 3-UIB 11% pond prokMSA_id:065382 AF511521 Microbacterium sp. HhOS4 prokMSA_id:055375 AF531012 Actinobacterium Msj2 prokMSA_id:076980 AF538343 isolate ENV-MO-0011 prokMSA_id:057944 AF544313 actinobacterium isolate M39 prokMSA_id:012169 AJ012826 Agrococcus citreus DSM 12453. prokMSA_id:073629 AJ309928 Agrococcus baldri strain V-108 prokMSA_id:063998 AJ491833 Corynebacterium aquaticum strain B25 prokMSA_id:076958 AJ518811 Leifsonia aquatica isolate B5 prokMSA_id:075113 AJ518812 Leifsonia aquatica isolate B7 prokMSA_id:089312 AJ568009 actinobacterium isolate DGGE-40 prokMSA_id:098035 AJ583815 actinobacterium clone DGGE band 37 prokMSA_id:061646 AY043544 Clavibacter sp. 5S2.D11 prokMSA_id:061612 AY043582 Forest soil 5S2.E7 prokMSA_id:061611 AY043583 Forest soil 5S2.A10 prokMSA_id:080401 AY192285 actinobacterium clone W1-4F prokMSA_id:088012 AY278885 Agrococcus jenensis prokMSA_id:096006 AY395155 actinobacterium clone E07ST prokMSA_id:012156 M77832 unnamed organism. prokMSA_id:012171 X89278 clone 16a. prokMSA_id:012154 X89323 clone 5011. prokMSA_id:012170 X89324 clone 5111. 2.30.1.9.1.2 AGROMYCES_SUBGROUP 43 seqs 2.30.1.9.1.2.001 OTU 5 seqs prokMSA_id:012182 AF148968 str. STS_R2A_07. prokMSA_id:012183 D45052 Agromyces mediolanus JCM 1376. prokMSA_id:012184 D45054 Agromyces mediolanus str. CNF 186; K. Aoki AN-15 JCM 9632. prokMSA_id:012185 D45056 Agromyces mediolanus str. CNF 208 JCM 9633. prokMSA_id:012179 X77449 Agromyces mediolanus DSM 20152 . 2.30.1.9.1.2.002 OTU 1 seq prokMSA_id:012181 AB023359 Agromyces IFO16238 IFO 16238. 2.30.1.9.1.2.003 OTU 1 seq prokMSA_id:012180 AB023356 Agromyces IFO16235 IFO 16235. 2.30.1.9.1.2.004 OTU 1 seq prokMSA_id:012178 D45060 Agromyces cerinus subsp. cerinus JCM 9083 . 2.30.1.9.1.2.005 OTU 7 seqs prokMSA_id:085975 AF503917 Agromyces albus prokMSA_id:087098 AY158025 Agromyces fucosus prokMSA_id:087117 AY277619 Agromyces cerinus subsp. nitratus strain IMET 11532 prokMSA_id:012172 D45055 Agromyces succinolyticus str. CNF 201. prokMSA_id:012173 D45061 Agromyces fucosus subsp. hippuratus JCM 9086 . prokMSA_id:012174 X77447 Agromyces ramosus DSM 43045 . prokMSA_id:012177 X77448 Agromyces cerinus subsp. cerinus DSM 8595 . 2.30.1.9.1.2.006 OTU 2 seqs prokMSA_id:012175 AB023357 Agromyces IFO16237 IFO 16236. prokMSA_id:012176 AB023358 Agromyces IFO16237 IFO 16237. 2.30.1.9.1.2.007 OTU 1 seq prokMSA_id:017726 AJ252586 Rhizosphere soil isolate RSI-19 2.30.1.9.1.2.008 OTU 1 seq prokMSA_id:030568 AF389342 Agromyces bannaensis 2.30.1.9.1.2.009 OTU 1 seq prokMSA_id:038522 AF224722 Subtercola boreus 2.30.1.9.1.2.010 OTU 1 seq prokMSA_id:068768 AF479332 Glacial ice G500K-1 2.30.1.9.1.2.011 OTU 1 seq prokMSA_id:070824 AF423078 Actinobacterium '#33 yellow' 2.30.1.9.1.2.012 OTU 1 seq prokMSA_id:089072 AB100411 Actinobacterium Shinshu-ah4 2.30.1.9.1.2.013 OTU 2 seqs prokMSA_id:095889 AY427830 Agromyces ulmi strain XIL01 complete prokMSA_id:095950 AY427831 Agromyces ulmi strain XIL05 complete 2.30.1.9.1.2.999 poor quality 18 seqs prokMSA_id:035118 AB054928 Agromyces sp. 1708b prokMSA_id:030951 AF078413 Grassland soil clone sl3_606 prokMSA_id:071352 AF423074 Actinobacterium '#33 white' prokMSA_id:078748 AF547034 64 prokMSA_id:078727 AF547046 150 prokMSA_id:017290 AJ252590 Rhizosphere soil isolate RSI-23 prokMSA_id:030173 AJ252594 Rhizosphere soil isolate RSI-27 prokMSA_id:051979 AY039463 Earthworm cast C21D1 prokMSA_id:027651 AY039466 Earthworm cast NC14 prokMSA_id:069505 AY143763 Agromyces sp. clone Lur25 prokMSA_id:098447 AY395163 actinobacterium clone F10ST prokMSA_id:012186 D45053 Agromyces mediolanus str. CNF 183; K. Aoki AN-9 JCM 9631. prokMSA_id:045781 D84587 Actinomycetes prokMSA_id:052077 D84589 Actinomycetes prokMSA_id:023663 D84602 Actinomycetes prokMSA_id:030511 D84610 Actinomycetes prokMSA_id:020700 D84613 Actinomycetes prokMSA_id:017905 X93582 Agromyces sp. 2.30.1.9.1.3 MICROBACTERIUM_SUBGROUP 347 seqs 2.30.1.9.1.3.1 MBM.BARKERI 7 seqs 2.30.1.9.1.3.1.001 OTU 1 seq prokMSA_id:012187 X77446 Microbacterium barkeri DSM 20145 . 2.30.1.9.1.3.1.002 OTU 2 seqs prokMSA_id:027703 AF263563 Microbacterium gubbeenense strain LMG S-19263 prokMSA_id:033272 AF263565 Microbacterium gubbeenense strain DPC 5284 2.30.1.9.1.3.1.003 OTU 1 seq prokMSA_id:044902 AF263564 Microbacterium gubbeenense strain DPC 5285 2.30.1.9.1.3.1.004 OTU 1 seq prokMSA_id:097664 AY395034 actinobacterium clone NAB30 2.30.1.9.1.3.1.999 poor quality 2 seqs prokMSA_id:087128 AJ561125 actinobacterium clone ANT-RB 48 prokMSA_id:070613 AY124486 S4-26 2.30.1.9.1.3.2 MBM.ESTERAROMATICUM_SUBGROUP 11 seqs 2.30.1.9.1.3.2.001 OTU 5 seqs prokMSA_id:065230 AB070467 Microbacterium sp. YK18 prokMSA_id:078299 AB099656 Microbacterium esteraromaticum complete strain: S38 prokMSA_id:077610 AB099657 Microbacterium esteraromaticum complete strain: S51 prokMSA_id:078245 AB099658 Microbacterium esteraromaticum complete strain: S29 prokMSA_id:012190 Y17231 Microbacterium esteraromaticum DSM 8609. 2.30.1.9.1.3.2.002 OTU 2 seqs prokMSA_id:080180 AF468437 Arctic sea ice ARK10030 prokMSA_id:077236 AY154603 earthworm cast clone c248 2.30.1.9.1.3.2.003 OTU 1 seq prokMSA_id:082555 AY241454 Microbacterium sp. UST020129-018 2.30.1.9.1.3.2.999 poor quality 3 seqs prokMSA_id:031158 AY037725 earthworm cast clone C121 prokMSA_id:012189 NONE Microbacterium esteraromaticum ATCC 8091 . prokMSA_id:012188 X89327 clone 5411. 2.30.1.9.1.3.3 MBM.ARABINOGALACTANOLYTICUM_SUBGROUP 24 seqs 2.30.1.9.1.3.3.001 OTU 3 seqs prokMSA_id:012193 AF154098 clone BPC090. prokMSA_id:091028 AY336544 Microbacterium sp. pfB15 prokMSA_id:012192 Y17228 Microbacterium arabinogalactanolyticum str. M-2 DSM 8611. 2.30.1.9.1.3.3.002 OTU 1 seq prokMSA_id:037173 AY048891 Q3-24C2 2.30.1.9.1.3.3.003 OTU 1 seq prokMSA_id:062478 AF513961 Actinobacteridae clone LA1-B9 2.30.1.9.1.3.3.004 OTU 6 seqs prokMSA_id:088998 AF465409 Plantibacter elymi prokMSA_id:089769 AF465410 Plantibacter cousiniae prokMSA_id:090513 AF465411 Plantibacter agrosticola prokMSA_id:066594 AF474326 Microbacterium sp. LB030 prokMSA_id:085042 AY273209 Curtobacterium fangii prokMSA_id:091011 AY336540 Microbacterium sp. pfB11 2.30.1.9.1.3.3.005 OTU 1 seq prokMSA_id:077657 AB089079 Actinobacteridae clone:Rs-F20 2.30.1.9.1.3.3.999 poor quality 12 seqs prokMSA_id:012191 AB004715 Microbacterium arabinogalactanolyticum str. M-2 IFO 14344 . prokMSA_id:027724 AF250420 Microbacterium sp. D59 prokMSA_id:069109 AY143762 Microbacterium sp. clone Lur22 prokMSA_id:086311 AY267524 Microbacterium sp. 3CBZ4 prokMSA_id:084461 AY267525 Microbacterium sp. 3CBL prokMSA_id:085478 AY267526 Microbacterium sp. 4CBAL prokMSA_id:085482 AY267527 Microbacterium sp. 4CBAH3 prokMSA_id:086605 AY267528 Microbacterium sp. 4CBAH2 prokMSA_id:085223 AY267529 Microbacterium sp. 4CBS prokMSA_id:084962 AY267530 Microbacterium sp. 3CBK prokMSA_id:086149 AY267531 Microbacterium sp. 3CBF prokMSA_id:012194 U27861 clone py3. 2.30.1.9.1.3.4 MBM.KERATANOLYTICUM_SUBGROUP 104 seqs 2.30.1.9.1.3.4.004 OTU 1 seq prokMSA_id:012195 X62913 str. UW 103/A31. 2.30.1.9.1.3.4.005 OTU 1 seq prokMSA_id:025807 AJ310412 Subtercola pratensis strain DSM 14226T 2.30.1.9.1.3.4.006 OTU 2 seqs prokMSA_id:058765 AJ508609 Microbacterium phyllosphaerae isolate MBRG 4.30 prokMSA_id:073512 AJ508704 Microbacterium phyllosphaerae isolate MBRG 4.30 2.30.1.9.1.3.4.007 OTU 1 seq prokMSA_id:037441 AB042093 Curtobacterium sp. VKM Ac-2058 2.30.1.9.1.3.4.009 OTU 57 seqs prokMSA_id:012202 AB004717 Microbacterium keratanolyticum IFO 13309 . prokMSA_id:012205 AB004719 Microbacterium saperdae str. 48-1-4 IFO 15038 . prokMSA_id:022179 AB042071 Microbacterium sp. VKM Ac-1391 prokMSA_id:044274 AB042074 Microbacterium sp. VKM Ac-1807 prokMSA_id:044945 AB042075 Microbacterium sp. VKM Ac-1808 prokMSA_id:023056 AB042076 Microbacterium sp. VKM Ac-2011 prokMSA_id:052309 AB042077 Microbacterium sp. VKM Ac-2012 prokMSA_id:054001 AB042078 Microbacterium sp. VKM Ac-2013 prokMSA_id:050641 AB042079 Microbacterium sp. VKM Ac-2014 prokMSA_id:021283 AB042080 Microbacterium sp. VKM Ac-2015 prokMSA_id:049197 AB042082 Microbacterium sp. VKM Ac-2047 prokMSA_id:038519 AB042084 Microbacterium sp. VKM Ac-2050 prokMSA_id:050251 AB042085 Microbacterium sp. VKM Ac-2051 prokMSA_id:042905 AB042092 Curtobacterium sp. VKM Ac-2057 prokMSA_id:018883 AB042096 Curtobacterium sp. VKM Ac-2061 prokMSA_id:025944 AF260714 Microbacterium sp. S10 prokMSA_id:070127 AF262735 Endocytic Noc1 prokMSA_id:042385 AF306541 Microbacterium sp. K49 prokMSA_id:019310 AF306542 Microbacterium sp. I33 prokMSA_id:036788 AF348727 Actinobacterium MPD-60 prokMSA_id:033980 AF403727 Actinobacterium MPD-93 prokMSA_id:054324 AF417868 Microbacterium sp. YSS/2001-1 prokMSA_id:020016 AF423215 soil clone 1245-2 prokMSA_id:035759 AF441321 PAH-contaminated sludge PB-26 prokMSA_id:068378 AF487795 Microbacterium sp. RZ-109 prokMSA_id:066278 AF506067 Microbacterium sp. LCSAOTU21 prokMSA_id:065385 AF511519 Microbacterium sp. SoO6 prokMSA_id:048968 AH010480 Microbacterium sp. A8-2 prokMSA_id:061995 AJ244676 Microbacterium sp. V4.MO.42 marine isolate prokMSA_id:061994 AJ244678 Microbacterium sp. V4.BO.47 marine isolate prokMSA_id:012201 AJ249780 Microbacterium foliorum str. P 333/02 DSM 12966. prokMSA_id:043773 AJ277840 Microbacterium phyllosphaerae strain DSM 13468 prokMSA_id:027593 AJ295433 Rape rhizosphere tsb033 prokMSA_id:072814 AJ309929 Microbacterium aerolatum prokMSA_id:033862 AJ391205 Microbacterium sp. AS-44 prokMSA_id:081759 AJ491806 Microbacterium paraoxydans strain CF36 prokMSA_id:090118 AJ576066 Microbacterium oxydans clone MR32Y prokMSA_id:093882 AJ581908 Microbacterium paraoxydans strain C57-33 prokMSA_id:042930 AY017057 Microbacterium sp. A8-2 5'- prokMSA_id:030590 AY017058 Microbacterium sp. A8-2 3'- prokMSA_id:026827 AY038630 clone GL178.9 prokMSA_id:027506 AY038631 clone GL182.38 prokMSA_id:034587 AY038632 clone GL184.20 prokMSA_id:064366 AY082800 Microbacterium sp. 210784 prokMSA_id:066631 AY094492 Microbacterium sp. clone 1-7 prokMSA_id:066620 AY094493 Microbacterium sp. clone 8-1 prokMSA_id:072348 AY144450 Microbacterium sp. 170702P4 prokMSA_id:077572 AY167852 Microbacterium phyllosphaerae strain SAFR-012 prokMSA_id:086965 AY278889 Microbacterium sp. T2-22 prokMSA_id:097612 AY378197 Extreme arid zone HX-IIF68 prokMSA_id:098211 AY395021 Microbacterium sp. NAB17 prokMSA_id:096178 AY395032 Micrococcus sp. clone NAB28 prokMSA_id:012197 X77444 Microbacterium liquefaciens DSM 20638 . prokMSA_id:012203 Y14786 Microbacterium keratanolyticum DSM 8606 . prokMSA_id:043813 Y15325 Aureobacterium sp. isolate PRLIST4 prokMSA_id:012199 Y17227 Microbacterium oxydans DSM 20578. prokMSA_id:012204 Y17233 Microbacterium keratanolyticum DSM 8606 . 2.30.1.9.1.3.4.010 OTU 1 seq prokMSA_id:068742 AF479358 Glacial ice SB12K-2-1 2.30.1.9.1.3.4.011 OTU 3 seqs prokMSA_id:080946 AF468336 clone ARKMP-30 prokMSA_id:084759 AJ441003 Antarctic R-9112 strain R-9112 prokMSA_id:079650 AY198112 clone ARKMP3 2.30.1.9.1.3.4.012 OTU 1 seq prokMSA_id:091806 AY345476 K32 2.30.1.9.1.3.4.013 OTU 1 seq prokMSA_id:095862 AY378239 Glacial ice MS-T2-07 2.30.1.9.1.3.4.014 OTU 1 seq prokMSA_id:097743 AY378179 Extreme arid zone HX-IE04 2.30.1.9.1.3.4.999 poor quality 35 seqs prokMSA_id:012206 AB004718 Microbacterium luteolum str. 69 IFO 15074 . prokMSA_id:084752 AB106924 Gram-positive 6-3 prokMSA_id:045117 AF047639 TRB50 prokMSA_id:048747 AF321067 Microbacterium oxydans strain U33 prokMSA_id:027210 AF360367 Microbacterium sp. NM005 prokMSA_id:032474 AF406681 Microbacterium sp. B13 strain B13 prokMSA_id:033056 AF441318 PAH-contaminated sludge PB-23 prokMSA_id:024780 AF441319 PAH-contaminated sludge PB-24 prokMSA_id:030154 AF441320 PAH-contaminated sludge PB-25 prokMSA_id:045924 AF441322 PAH-contaminated sludge PB-27 prokMSA_id:058130 AF498687 Ellin305 prokMSA_id:056409 AF498723 Ellin341 prokMSA_id:058094 AF498726 Ellin344 prokMSA_id:058083 AF498736 Ellin354 prokMSA_id:018921 AJ252737 Potato plant root clone RC-III-86 prokMSA_id:051325 AJ289968 isolate CBM5-27 prokMSA_id:045485 AJ295363 Rape rhizosphere cse042 prokMSA_id:021527 AJ295425 Rape rhizosphere tsb019 prokMSA_id:050899 AJ295426 Rape rhizosphere tsb021 prokMSA_id:033867 AJ295432 Rape rhizosphere tsb032 prokMSA_id:072236 AJ295434 Rape rhizosphere tsb034 prokMSA_id:050177 AJ295442 Rape rhizosphere tsb052 prokMSA_id:016399 AJ295443 Rape rhizosphere tsb053 prokMSA_id:073840 AJ516054 Aureobacterium liquefaciens strain L1/15 prokMSA_id:077130 AJ517831 Microbacterium sp. E1 strain E1 prokMSA_id:078416 AJ534852 Microbacterium sp. DW129 isolate DW129 prokMSA_id:039503 AY039447 Earthworm burrow B11D2 prokMSA_id:041662 AY039502 Soil S86D1 prokMSA_id:086065 AY267534 Microbacterium sp. 4CBAG5 prokMSA_id:086446 AY275515 Microbacterium sp. MSB2098 prokMSA_id:096537 AY378223 Glacial ice ML-D1 prokMSA_id:012196 NONE Microbacterium maritypicum ATCC 19260 . prokMSA_id:012207 X93589 Microbacterium sp. str. Mainz. prokMSA_id:012198 Y17235 Microbacterium luteolum str. 69 DSM 20143 . prokMSA_id:012200 Y17236 Microbacterium saperdae str. 48-1-4 DSM 20169. 2.30.1.9.1.3.5 MBM.IMPERIALE_SUBGROUP 136 seqs 2.30.1.9.1.3.5.001 OTU 2 seqs prokMSA_id:012248 D21339 Microbacterium arborescens IFO 3750 . prokMSA_id:012237 D21342 Microbacterium imperiale IFO 12610 . 2.30.1.9.1.3.5.003 OTU 1 seq prokMSA_id:012246 D21340 Microbacterium aurum IFO 15204 . 2.30.1.9.1.3.5.010 OTU 1 seq prokMSA_id:012231 AB002637 str. HTA064. 2.30.1.9.1.3.5.015 OTU 1 seq prokMSA_id:012221 AB007418 Microbacterium aurum IFO 15204 . 2.30.1.9.1.3.5.026 OTU 1 seq prokMSA_id:021520 AJ318140 Actinobacterium clone BIhi33 2.30.1.9.1.3.5.027 OTU 2 seqs prokMSA_id:040018 AJ318158 Actinobacterium clone BIlii24 prokMSA_id:026311 AJ318159 Actinobacterium clone BIlii24b 2.30.1.9.1.3.5.028 OTU 1 seq prokMSA_id:029862 AF369644 Microbacterium sp. AB005 2.30.1.9.1.3.5.029 OTU 2 seqs prokMSA_id:032010 AF188176 Actinobacterium KE27CII-4 prokMSA_id:095873 AJ575541 actinobacterium clone W2 2.30.1.9.1.3.5.032 OTU 1 seq prokMSA_id:035197 AB042073 Microbacterium sp. VKM Ac-1782 2.30.1.9.1.3.5.033 OTU 1 seq prokMSA_id:039537 AB042081 Microbacterium sp. VKM Ac-2016 2.30.1.9.1.3.5.035 OTU 56 seqs prokMSA_id:012244 AB002638 str. HTA459. prokMSA_id:012245 AB002639 str. HTA212. prokMSA_id:012232 AB004716 Microbacterium flavescens IFO 15039 . prokMSA_id:012226 AB004721 Microbacterium terregens str. 88 IFO 12961 . prokMSA_id:012228 AB004723 Microbacterium schleiferi str. S 110 IFO 15075 . prokMSA_id:012210 AB004725 Microbacterium chocolatum IFO 3758 . prokMSA_id:012238 AB004726 Microbacterium aurantiacum IFO 15234 . prokMSA_id:012222 AB004727 Microbacterium hominis IFO 15708 . prokMSA_id:012225 AB004728 Microbacterium sp. IFO 15709. prokMSA_id:012209 AB007414 Microbacterium imperiale. prokMSA_id:012212 AB007415 Microbacterium lacticum. prokMSA_id:012220 AB007416 Microbacterium laevaniformans. prokMSA_id:012224 AB007417 Microbacterium dextranolyticum. prokMSA_id:012217 AB007421 Microbacterium arborescens IFO 3750 . prokMSA_id:012229 AB008512 str. 13-2. prokMSA_id:012239 AB010861 str. HTB113. prokMSA_id:012240 AB010862 str. HTB096. prokMSA_id:012241 AB013907 Microbacterium Aureobacterium kitamiense str. kitami C2. prokMSA_id:012242 AB013919 Microbacterium Aureobacterium kitamiense str. kitami C2. prokMSA_id:012243 AB013920 Microbacterium Aureobacterium kitamiense str. kitami A1. prokMSA_id:012218 AB015562 str. BD4-12. prokMSA_id:012223 AB021324 str. rJ6. prokMSA_id:033247 AB042070 Microbacterium sp. VKM Ac-1389 prokMSA_id:031690 AB074751 Actinobacterium S-Sund-11A prokMSA_id:041497 AB078839 Microbacteriaceae str. W7 prokMSA_id:096585 AB114267 Microbacterium sp. Sukashi-2 prokMSA_id:024767 AF287752 Microbacterium sp. oral strain C24KA prokMSA_id:048197 AF306835 Microbacterium sp. VA22800_00 prokMSA_id:047252 AF329727 Microbacterium sp. absalar prokMSA_id:026169 AF349766 TCE16 prokMSA_id:072245 AF385527 Microbacterium sp. oral clone AV005b prokMSA_id:042242 AF394172 Blackwater bioreactor BW7 prokMSA_id:062998 AF526906 Microbacterium imperiale strain 51-6c rrn prokMSA_id:062992 AF526916 Microbacterium imperiale strain 27v1b rrn prokMSA_id:029423 AJ251194 Microbacterium sp. MAS133 strain MAS133 prokMSA_id:041920 AJ296094 Microbacterium sp. OS-6 strain OS-6 prokMSA_id:077157 AJ534677 actinobacterium clone S15A-MN4 prokMSA_id:095703 AJ575543 actinobacterium clone W4 prokMSA_id:033935 AY062021 Xylanomicrobium cellulosilyticum complete prokMSA_id:064365 AY082801 Microbacterium sp. 44574 prokMSA_id:093821 AY238940 Microbacterium arborescens kr10 prokMSA_id:084398 AY244780 Microbacterium lacticum prokMSA_id:083680 AY262001 Microbacterium kitamiense strain OB-2 prokMSA_id:087526 AY278906 Microbacterium imperiale prokMSA_id:012247 D21341 Microbacterium dextranolyticum str. M-73 IFO 14592 . prokMSA_id:012219 D21343 Microbacterium lacticum IFO 14135 . prokMSA_id:012215 D21344 Microbacterium laevaniformans IFO 14471 . prokMSA_id:012211 X77441 Microbacterium lacticum DSM 20427 . prokMSA_id:012208 X77442 Microbacterium imperiale DSM 20530 . prokMSA_id:012216 X77443 Microbacterium arborescens DSM 20754 . prokMSA_id:012233 X95482 Microbacterium sp. str. gh942. prokMSA_id:012214 Y07842 Microbacterium SB22 str. SB22. prokMSA_id:012213 Y17229 Microbacterium aurum DSM 8600. prokMSA_id:012234 Y17230 Microbacterium dextranolyticum str. M-73 DSM 8607. prokMSA_id:012235 Y17234 Microbacterium laevaniformans DSM 20140. prokMSA_id:012230 Y17237 Microbacterium schleiferi str. S 110 DSM 20489 . 2.30.1.9.1.3.5.036 OTU 1 seq prokMSA_id:044928 AF390085 Microbacterium sp. Pla-1 2.30.1.9.1.3.5.037 OTU 2 seqs prokMSA_id:049537 AJ297438 Cryobacterium aff. psychrophilum A1/C-aer/OI prokMSA_id:062238 AY124341 CS117 2.30.1.9.1.3.5.038 OTU 1 seq prokMSA_id:067622 AF489290 Microbacterium sp. isolate K454 2.30.1.9.1.3.5.039 OTU 1 seq prokMSA_id:071669 AF535159 Microbacterium laevaniformans LA complete 2.30.1.9.1.3.5.040 OTU 1 seq prokMSA_id:080270 AF468273 clone ARKCH4-34 2.30.1.9.1.3.5.041 OTU 1 seq prokMSA_id:081735 AY192047 actinobacterium 2.30.1.9.1.3.5.042 OTU 2 seqs prokMSA_id:082704 AF505513 Cryocola antiquus strain VKM Ac-2070 prokMSA_id:082683 AF505514 Cryocola antiquus strain VKM 103PF 2.30.1.9.1.3.5.043 OTU 1 seq prokMSA_id:085163 AY217497 Actinobacterium WCIR1 2.30.1.9.1.3.5.044 OTU 1 seq prokMSA_id:085798 AJ555228 actinomycete clone AOF36 2.30.1.9.1.3.5.045 OTU 2 seqs prokMSA_id:097982 AY378243 Glacial ice MS-T6-04 prokMSA_id:098533 AY378277 Permafrost DT-IIF6 2.30.1.9.1.3.5.999 poor quality 54 seqs prokMSA_id:033616 AB010618 Microbacterium sp. clone ASB007 prokMSA_id:022292 AB027701 Microbacterium sp. B24 prokMSA_id:048748 AB027703 Corynebacterium-like B27 prokMSA_id:070836 AB081582 Microbacterium sp. A49 prokMSA_id:098127 AB124358 Streptomyces sp. 337F01 prokMSA_id:029589 AF078272 Grassland soil clone saf3_001 prokMSA_id:052604 AF106599 Microbacterium imperiale prokMSA_id:047287 AF125111 Aquatic RUB_R2A_46 prokMSA_id:037862 AF125112 Aquatic RUB_R2A_64 prokMSA_id:023970 AF128735 soil C075 prokMSA_id:032401 AF148966 Aquatic RUB_R2A_63 prokMSA_id:021078 AF182016 Microbacterium sp. SCB57 prokMSA_id:044547 AF182023 Actinomycete BAL6 prokMSA_id:037008 AF226167 Maize root ZmrIs2 prokMSA_id:050809 AF226169 Maize root ZmrIs4 prokMSA_id:046604 AF295663 Microbacterium sp. 050 prokMSA_id:026560 AF323562 Microbacterium sp. F6 prokMSA_id:024401 AF392709 clone CRC3 prokMSA_id:080794 AF448172 actinobacterium clone ML1218M-29 prokMSA_id:079679 AF448173 actinobacterium clone ML310M-13 prokMSA_id:080802 AF448175 actinobacterium clone ML310M-41 prokMSA_id:079906 AF448176 actinobacterium clone ML320J-25 prokMSA_id:080811 AF448181 actinobacterium clone ML817J-5 prokMSA_id:080800 AF448182 actinobacterium clone ML602M-18 prokMSA_id:056348 AF497895 actinobacterium isolate WL5-18 prokMSA_id:066139 AF510044 Microbacterium imperiale prokMSA_id:073232 AF530278 Microbacterium sp. S4-24 prokMSA_id:071287 AF530279 Microbacterium sp. S7-08 prokMSA_id:069325 AF530969 Actinobacterium so05 prokMSA_id:040143 AJ295413 Rape rhizosphere M9085 prokMSA_id:029207 AJ295447 Rape rhizosphere tsb063 prokMSA_id:019081 AJ299566 Microbacterium sp. CZ245b isolate CZ245b prokMSA_id:033433 AJ309966 Microbacterium sp. dtb18 prokMSA_id:097244 AJ585239 Microbacterium sp. PS-PfuK3 strain PS-PfuK3 prokMSA_id:036725 AY039460 Earthworm cast C1M1 prokMSA_id:035069 AY039461 Earthworm cast C10D1 prokMSA_id:021978 AY039468 Earthworm cast NC5 prokMSA_id:022406 AY039472 Soil NS1 prokMSA_id:024817 AY039478 Soil NS6 prokMSA_id:072755 AY149469 Microbacterium sp. clone LTUGr00156 prokMSA_id:069589 AY149470 Microbacterium sp. clone LTUGr02356 prokMSA_id:077021 AY154503 earthworm intestine clone ew17 prokMSA_id:076789 AY159170 MF_isolate_42 prokMSA_id:075207 AY159211 RO_isolate_18 prokMSA_id:087347 AY278908 Microbacterium arborescens isolate T5-14 prokMSA_id:087234 AY278922 Microbacterium arborescens isolate TB11 prokMSA_id:087489 AY278924 Microbacterium sp. TB14 prokMSA_id:087746 AY278926 Microbacterium arborescens isolate TB2 prokMSA_id:090344 AY321980 Microbacterium imperiale strain CN2 prokMSA_id:091414 AY344426 clone L4-25 prokMSA_id:036807 D84638 Actinomycetes prokMSA_id:012236 U58343 str. e428122. prokMSA_id:022433 U78941 Marine R2A170 prokMSA_id:012227 Y17239 Microbacterium terregens str. 88 DSM 20449. 2.30.1.9.1.3.6 MBM.THALASSIUM_SUBGROUP 65 seqs 2.30.1.9.1.3.6.002 OTU 3 seqs prokMSA_id:012255 AB004714 Microbacterium halophilum str. N 76 IFO 16062 . prokMSA_id:012256 AB023369 Microbacterium IFO16248 IFO 16248. prokMSA_id:012257 AB023370 Microbacterium IFO16249 IFO 16249. 2.30.1.9.1.3.6.013 OTU 2 seqs prokMSA_id:047210 AB042090 Curtobacterium sp. VKM Ac-2052 prokMSA_id:030709 AF159363 Agrevia bicolorata 2.30.1.9.1.3.6.018 OTU 1 seq prokMSA_id:068755 AF479346 Glacial ice G50-L3 2.30.1.9.1.3.6.020 OTU 35 seqs prokMSA_id:012254 AB004713 Microbacterium thalassium IFO 16060 . prokMSA_id:012251 AB004720 Microbacterium terrae IFO 15300. prokMSA_id:012250 AB004724 Microbacterium ketosireducens IFO 14548 . prokMSA_id:018236 AB032250 RSB-1 prokMSA_id:039691 AB042072 Microbacterium sp. VKM Ac-1781 prokMSA_id:026967 AB042083 Microbacterium sp. VKM Ac-2048 prokMSA_id:018263 AB042094 Curtobacterium sp. VKM Ac-2059 prokMSA_id:041086 AB042097 Curtobacterium sp. VKM Ac-2062 prokMSA_id:041897 AF306834 Microbacterium sp. VA8728_00 prokMSA_id:019202 AF319539 Microbacterium nematophilum prokMSA_id:033383 AF388031 Microbacterium sp. 46 prokMSA_id:066595 AF474325 Microbacterium testaceum strain SE017 prokMSA_id:066592 AF474327 Microbacterium testaceum strain SE034 prokMSA_id:066583 AF474330 Microbacterium testaceum strain CE648 prokMSA_id:068771 AF479329 Glacial ice G500K-10 prokMSA_id:068740 AF479361 Glacial ice SB12K-2-3 prokMSA_id:073476 AF479366 Glacial ice SB12K-6-3 prokMSA_id:063001 AF526904 Microbacterium imperiale strain 51-9c rrn prokMSA_id:055850 AF526910 Microbacterium imperiale strain 47v1 rrn prokMSA_id:062990 AF526917 Microbacterium testaceum strain 27v1a rrn prokMSA_id:059548 AF538744 CAGY3 strain CAGY-3 prokMSA_id:059260 AF540988 Microbacteriaceae 110602K2 prokMSA_id:061998 AJ244677 Microbacterium sp. V4.BP.11 marine isolate prokMSA_id:076132 AY154614 earthworm cast clone c262 prokMSA_id:078414 AY177373 Phenanthrene-degrading 78 prokMSA_id:086183 AY244784 Microbacterium resistens prokMSA_id:088097 AY277553 Microbacterium resistens strain AGP4-3 prokMSA_id:088137 AY336119 Microbacterium terrae strain SD-4 prokMSA_id:090597 AY336120 Microbacterium sp. SD-9 prokMSA_id:091438 AY345421 K2-33 prokMSA_id:012259 X77445 Microbacterium testaceum DSM 20166 . prokMSA_id:012258 Y14699 Aureobacterium resistens DMMZ 1710 . prokMSA_id:012252 Y17232 Microbacterium flavescens DSM 20643. prokMSA_id:012253 Y17238 Microbacterium terrae DSM 8610. prokMSA_id:032634 Y17240 Microbacterium trichotecenolyticum 2.30.1.9.1.3.6.021 OTU 2 seqs prokMSA_id:087491 AY278865 Microbacterium testaceum isolate CT11 prokMSA_id:087527 AY278868 Microbacterium testaceum isolate CT14 2.30.1.9.1.3.6.022 OTU 1 seq prokMSA_id:087745 AY268339 clone D1 small subunit 2.30.1.9.1.3.6.023 OTU 1 seq prokMSA_id:094370 AY376165 Microbacterium halophilum strain YIM 70130 2.30.1.9.1.3.6.999 poor quality 20 seqs prokMSA_id:012249 AB004722 Microbacterium trichothecenolyticum str. 114-2 IFO 15077 . prokMSA_id:051949 AB027702 Microbacterium sp. B19 prokMSA_id:033687 AF406665 Microbacterium sp. A16 strain A16 prokMSA_id:025822 AF406669 Microbacterium kitamiense strain A20 prokMSA_id:042990 AF406687 Microbacterium sp. B20 strain B20 prokMSA_id:073603 AF530280 Microbacterium sp. S4-20 prokMSA_id:072181 AF530281 Microbacterium sp. S4-23 prokMSA_id:078607 AF547028 357 prokMSA_id:078800 AJ534857 Microbacterium sp. DW8 isolate DW8 prokMSA_id:031420 AY039473 Soil NS10 prokMSA_id:037644 AY039487 Soil S3D2 prokMSA_id:023914 AY039497 Soil S71M1 prokMSA_id:041811 AY039504 Soil S86M2 prokMSA_id:059551 AY135481 Microbacterium sp. S5-31 prokMSA_id:083981 AY256604 DGGE band S3-11 prokMSA_id:082933 AY256605 DGGE band S3-4 prokMSA_id:087397 AY278867 Microbacterium sp. CT13 prokMSA_id:087190 AY278895 Microbacterium testaceum isolate T2-30 prokMSA_id:091280 AY336536 Microbacterium sp. pfB7 prokMSA_id:095661 AY395287 VA-F-3 2.30.1.9.1.4 CLAVIBACTER_SUBGROUP 393 seqs 2.30.1.9.1.4.1 CLV.MICHIGANENSE_SUBGROUP 113 seqs 2.30.1.9.1.4.1.001 OTU 19 seqs prokMSA_id:045123 AB042095 Curtobacterium sp. VKM Ac-2060 prokMSA_id:066587 AF474328 Clavibacter michiganensis prokMSA_id:073009 AF479348 Glacial ice G50-PD1 prokMSA_id:039549 AJ310415 Clavibacter michiganensis strain P 202/10 prokMSA_id:019936 AJ310416 Clavibacter michiganensis strain P 250/01 prokMSA_id:091386 AY336551 Clavibacter sp. pfB22 prokMSA_id:012269 D45059 Clavibacter michiganense subsp. michiganense JCM 3345. prokMSA_id:012261 D84128 Clavibacter michiganensis subsp. michiganensis str. JCM 1370. prokMSA_id:012272 L43096 Clavibacter michiganense. prokMSA_id:070525 L43096 Clavibacter michiganensis complete prokMSA_id:012266 U09761 Clavibacter michiganense subsp. insidiosum LMG 3663 . prokMSA_id:012268 U09762 Clavibacter michiganense subsp. michiganense LMG 7333 . prokMSA_id:012265 U09763 Clavibacter michiganense subsp. nebraskense LMG 5627 . prokMSA_id:012270 U09764 Clavibacter michiganense subsp. sepedonicum LMG 2889 . prokMSA_id:012273 U30254 Clavibacter michiganense. prokMSA_id:012262 U96181 Clavibacter michiganense subsp. tessellarius ATCC 33566 . prokMSA_id:012271 U96182 Clavibacter michiganensis subsp. nebraskensis ATCC 27822. prokMSA_id:012263 X77434 Clavibacter michiganense subsp. nebraskense DSM 7483 . prokMSA_id:012260 X77435 Clavibacter michiganense subsp. michiganense DSM 46364 . 2.30.1.9.1.4.1.002 OTU 1 seq prokMSA_id:016443 AJ289982 FukuN101 2.30.1.9.1.4.1.004 OTU 1 seq prokMSA_id:025777 AJ289933 1404-25l 2.30.1.9.1.4.1.005 OTU 5 seqs prokMSA_id:037764 AF157478 Frigoribacterium sp. 227 prokMSA_id:043521 AF157479 Frigoribacterium sp. 301 prokMSA_id:031778 AF157480 Frigoribacterium sp. 312 prokMSA_id:096120 AY378261 Permafrost DT-IIK32 prokMSA_id:045654 Y18807 Frigoribacter sp. 801 2.30.1.9.1.4.1.006 OTU 2 seqs prokMSA_id:079897 AF468441 Arctic sea ice ARK10186 prokMSA_id:079704 AF468442 Arctic sea ice ARK10190 2.30.1.9.1.4.1.008 OTU 13 seqs prokMSA_id:080750 AF468439 Arctic sea ice ARK10165 prokMSA_id:059853 AJ507460 Actinobacterium MWH-Mo1 prokMSA_id:056496 AJ507461 Actinobacterium MWH-Mo2 prokMSA_id:059525 AJ507462 Actinobacterium MWH-Mo3 prokMSA_id:059856 AJ507464 Actinobacterium MWH-Wo1 prokMSA_id:059854 AJ507466 Actinobacterium MWH-Ta1 prokMSA_id:059857 AJ507467 Actinobacterium MWH-Ta2 prokMSA_id:089495 AJ565412 Microbacteriaceae MWH-Man1 isolate MWH-Man1 prokMSA_id:088133 AJ565413 Microbacteriaceae MWH-VicE1 isolate MWH-VicE1 prokMSA_id:089732 AJ565414 Actinobacterium MWH-TaSIIW17 isolate MWH-TaSIIW17 prokMSA_id:089130 AJ565435 Actinobacterium MWH-Tana7 isolate MWH-Tana7 prokMSA_id:090191 AJ565436 Actinobacterium MWH-Uga2 isolate MWH-Uga2 prokMSA_id:088993 AY315169 Glacier FJS11 2.30.1.9.1.4.1.009 OTU 1 seq prokMSA_id:083306 AJ440992 Antarctic R-8287 strain R-8287 2.30.1.9.1.4.1.010 OTU 1 seq prokMSA_id:094524 AY372075 Hindgut symbiont C3 of Tipula abdominalis 2.30.1.9.1.4.1.011 OTU 2 seqs prokMSA_id:096124 AJ575511 actinobacterium clone S10 prokMSA_id:097560 AJ575539 actinobacterium clone D3 2.30.1.9.1.4.1.012 OTU 3 seqs prokMSA_id:096328 AJ575497 actinobacterium clone R1 prokMSA_id:097410 AJ575498 actinobacterium clone R2 prokMSA_id:097092 AJ575528 actinobacterium clone N1 2.30.1.9.1.4.1.013 OTU 2 seqs prokMSA_id:097841 AJ575502 actinobacterium clone R6 prokMSA_id:097258 AJ575531 actinobacterium clone N4 2.30.1.9.1.4.1.999 poor quality 63 seqs prokMSA_id:012274 AF170740 Corynebacterium QSSC3-5 str. QSSC3-5. prokMSA_id:023066 AF406667 Clavibacter michiganensis strain A18 prokMSA_id:037454 AF406677 Clavibacter michiganensis strain B7 prokMSA_id:059399 AF428586 clone CRD99-08 prokMSA_id:041852 AF428591 clone CRD99-13 prokMSA_id:028637 AF428602 clone CRD99-24 prokMSA_id:026078 AF428632 clone CRD99-54 prokMSA_id:034127 AF428637 clone CRD99-59 prokMSA_id:036879 AF428657 clone CRP99-03 prokMSA_id:052188 AF428686 clone CRP99-32 prokMSA_id:040638 AF428758 clone CR98-5-28 prokMSA_id:017892 AF428760 clone CR98-5-30 prokMSA_id:046418 AF428767 clone CR98-5-37 prokMSA_id:034382 AF428799 clone CR98-5-69 prokMSA_id:043582 AF428845 clone CR98-24-39 prokMSA_id:048109 AF428850 clone CR98-24-44 prokMSA_id:034425 AF428860 clone CR98-24-54 prokMSA_id:039612 AF428867 clone CR98-24-61 prokMSA_id:039455 AF428895 clone CR98-35-13 prokMSA_id:038850 AF428926 clone CR98-35-44 prokMSA_id:032318 AF428966 clone CR99-35-08 prokMSA_id:030751 AF428967 clone CR99-35-09 prokMSA_id:022348 AF428979 clone CR99-35-21 prokMSA_id:040350 AF428996 clone CR99-35-38 prokMSA_id:026340 AF429003 clone CR99-35-45 prokMSA_id:051201 AF429024 clone CR99-35-66 prokMSA_id:051474 AF429042 clone CR99-7-08 prokMSA_id:039210 AF429043 clone CR99-7-09 prokMSA_id:043961 AF429047 clone CR99-7-13 prokMSA_id:042812 AF429048 clone CR99-7-14 prokMSA_id:035961 AF429052 clone CR99-7-18 prokMSA_id:019100 AF429053 clone CR99-7-19 prokMSA_id:046383 AF429062 clone CR99-7-28 prokMSA_id:038177 AF429075 clone CR99-7-41 prokMSA_id:039823 AF429094 clone CR99-7-60 prokMSA_id:044966 AF429097 clone CR99-7-63 prokMSA_id:022282 AF429098 clone CR99-7-64 prokMSA_id:041929 AF429186 clone CR99-24-76 prokMSA_id:033125 AF429204 clone CR99-2-18 prokMSA_id:020719 AF429217 clone CR99-2-31 prokMSA_id:026757 AF429218 clone CR99-2-32 prokMSA_id:033844 AF429219 clone CR99-2-33 prokMSA_id:037400 AF429226 clone CR99-2-40 prokMSA_id:028884 AF440441 Frigoribacterium sp. W10.5 prokMSA_id:073967 AF451847 Clavibacter michiganensis strain dO prokMSA_id:079962 AF468235 clone ARKCH2Br2-39 prokMSA_id:068700 AF484062 clone p93 prokMSA_id:065380 AF511523 Frigoribacterium sp. VincaUS5 prokMSA_id:012264 AJ243012 Frigoribacterium NS/4 str. NS/4. prokMSA_id:071023 AJ318209 Actinobacterium isolate Lake-5 prokMSA_id:072503 AJ318210 Actinobacterium isolate Lake-6 prokMSA_id:059985 AJ507508 clone VE44-99 prokMSA_id:082077 AJ550436 clone AS 35 prokMSA_id:081406 AJ550437 clone AS 38 prokMSA_id:081729 AJ550438 clone AS 67 prokMSA_id:086491 AY271859 clone BSW 4 prokMSA_id:091974 AY336533 Clavibacter sp. pfB4 prokMSA_id:091182 AY336543 Clavibacter sp. pfB14 prokMSA_id:091265 AY336555 Clavibacter sp. pfB26 prokMSA_id:091959 AY336557 Clavibacter sp. pfB28 prokMSA_id:012275 D45051 Clavibacter michiganense subsp. insidiosum JCM 1369 . prokMSA_id:012267 S70780 Clavibacter michiganense subsp. sepedonicum. prokMSA_id:052250 X86603 sp. strain IF-06 2.30.1.9.1.4.2 RTB.RATHAYI_SUBGROUP 192 seqs 2.30.1.9.1.4.2.001 OTU 10 seqs prokMSA_id:021685 AF159364 Rathayibacter carexis prokMSA_id:071625 AF159365 Rathayibacter festuci prokMSA_id:075983 AY150910 actinobacterium clone WYO9C prokMSA_id:077324 AY167853 Rathayibacter tritici strain SAFR-009 prokMSA_id:085118 AY244990 rumen clone BS39 prokMSA_id:012287 D45062 Rathayibacter rathayi JCM 9307 . prokMSA_id:012289 U96184 Rathayibacter iranicus str. 1. prokMSA_id:012279 U96185 Rathayibacter tritici ATCC 11402. prokMSA_id:012278 X77438 Rathayibacter tritici DSM 7486 . prokMSA_id:012288 X77439 Rathayibacter rathayi DSM 7485 . 2.30.1.9.1.4.2.002 OTU 1 seq prokMSA_id:012286 D84127 Rathayibacter toxicus str. CS14 JCM 9669 . 2.30.1.9.1.4.2.003 OTU 2 seqs prokMSA_id:025558 AF050574 WCHB1-18 prokMSA_id:012285 AF170755 str. QSSC9-20. 2.30.1.9.1.4.2.005 OTU 1 seq prokMSA_id:012280 AB008510 str. 12-8. 2.30.1.9.1.4.2.006 OTU 1 seq prokMSA_id:012276 U31485 str. RS28. 2.30.1.9.1.4.2.008 OTU 1 seq prokMSA_id:018160 AF321022 Frigoribacterium sp. GOBB3-206 2.30.1.9.1.4.2.010 OTU 24 seqs prokMSA_id:039435 AB022620 gram-positive SB01 prokMSA_id:052378 AB022623 gram-positive SB11 prokMSA_id:020699 AB022624 gram-positive SB19 prokMSA_id:051469 AB022625 gram-positive SB20 prokMSA_id:038222 AB022627 gram-positive SB26 prokMSA_id:020628 AB022628 gram-positive SB33 prokMSA_id:033170 AB022629 gram-positive SB39 prokMSA_id:031526 AB022630 gram-positive SB53 prokMSA_id:021429 AB022631 gram-positive SB60 prokMSA_id:047131 AB022632 gram-positive SB66 prokMSA_id:039382 AB022633 gram-positive TK01 prokMSA_id:036086 AB022636 gram-positive TK19 prokMSA_id:019476 AB022637 gram-positive TK36 prokMSA_id:052485 AB022640 gram-positive TK100 prokMSA_id:016324 AF356010 clone BA4 prokMSA_id:030944 AF356014 clone RO23 prokMSA_id:017543 AF356023 clone S45 prokMSA_id:035723 AF356026 clone S56 prokMSA_id:095180 AJ575515 actinobacterium clone SV1-1 prokMSA_id:096596 AJ575517 actinobacterium clone SV1-7 prokMSA_id:095198 AJ575519 actinobacterium clone SV1-10 prokMSA_id:097172 AJ575520 actinobacterium clone SV1-11 prokMSA_id:097372 AJ575521 actinobacterium clone SV1-12 prokMSA_id:098221 AJ575522 actinobacterium clone SV1-16 2.30.1.9.1.4.2.011 OTU 1 seq prokMSA_id:034321 AF195447 Clavibacter kpa40f 2.30.1.9.1.4.2.012 OTU 1 seq prokMSA_id:035440 AJ310413 Curtobacterium herbarum strain DSM 14013T 2.30.1.9.1.4.2.013 OTU 1 seq prokMSA_id:035764 AJ290023 FukuN15 2.30.1.9.1.4.2.014 OTU 1 seq prokMSA_id:046295 AJ297441 Frigoribacterium aff. faeni A-1/C-an/E 2.30.1.9.1.4.2.015 OTU 1 seq prokMSA_id:050557 AF224723 Subtercola frigoramans 2.30.1.9.1.4.2.016 OTU 1 seq prokMSA_id:059851 AJ507468 Actinobacterium MWH-Ta3 2.30.1.9.1.4.2.017 OTU 2 seqs prokMSA_id:059852 AJ507463 Actinobacterium MWH-Po1 prokMSA_id:059855 AJ507465 Actinobacterium MWH-Bo1 2.30.1.9.1.4.2.018 OTU 29 seqs prokMSA_id:079920 AF445364 actinobacterium ML110J-7 prokMSA_id:079782 AF445365 actinobacterium ML110M-12 prokMSA_id:079487 AF447768 actinobacterium ML320J-19 prokMSA_id:080013 AF448168 actinobacterium clone ML110J-11 prokMSA_id:080234 AF448170 actinobacterium clone ML110M-5 prokMSA_id:080474 AF448171 actinobacterium clone ML1218M-10 prokMSA_id:080358 AF448177 actinobacterium clone ML320J-32 prokMSA_id:081025 AF448180 actinobacterium clone ML602M-15 prokMSA_id:082444 AF486490 actinobacterium ML602J-51 prokMSA_id:081544 AF486502 actinobacterium ML602J-39 prokMSA_id:082395 AF486503 actinobacterium ML602J-2 prokMSA_id:081825 AF486504 actinobacterium ML602J-22 prokMSA_id:082052 AF486505 actinobacterium ML602J-27 prokMSA_id:062711 AF507842 actinobacterium clone ML602J-4 prokMSA_id:062710 AF507843 actinobacterium clone ML602J-62 prokMSA_id:062709 AF507844 actinobacterium clone ML602J-39 prokMSA_id:062708 AF507845 actinobacterium clone ML602J-48 prokMSA_id:062712 AF507846 actinobacterium clone ML602J-51 prokMSA_id:062704 AF507847 actinobacterium clone ML602J-2 prokMSA_id:062705 AF507848 actinobacterium clone ML617.5J-10 prokMSA_id:062703 AF507849 actinobacterium clone ML617.5J-4 prokMSA_id:097094 AJ575516 actinobacterium clone SV1-3 prokMSA_id:097424 AJ575518 actinobacterium clone SV1-8 prokMSA_id:096376 AJ575523 actinobacterium clone SV2-17 prokMSA_id:098272 AJ575524 actinobacterium clone SV2-20 prokMSA_id:097223 AJ575525 actinobacterium clone SV2-21 prokMSA_id:096768 AJ575526 actinobacterium clone SV2-22 prokMSA_id:095858 AJ575527 actinobacterium clone SV2-23 prokMSA_id:091955 AY344420 clone K2-30-8 2.30.1.9.1.4.2.019 OTU 1 seq prokMSA_id:067398 AJ456967 Gram-positive LIg-3 isolate LIg-3 2.30.1.9.1.4.2.020 OTU 1 seq prokMSA_id:067401 AJ456966 Gram-positive LCm-11 isolate LCm-11 2.30.1.9.1.4.2.022 OTU 7 seqs prokMSA_id:012281 AB012646 Detolaasinbacter tsukamotoae str. CM-05. prokMSA_id:012282 AB012647 Detolaasinbacter shiratae str. CM-01. prokMSA_id:012283 AB012648 Detolaasinbacter muratae str. CM-10. prokMSA_id:012284 AB020204 Detolaasinbacter OM-A1 str. OM-A1. prokMSA_id:045224 AB074152 Mycetocola tolaasinivorans prokMSA_id:068745 AF479355 Glacial ice G50-TB8 prokMSA_id:097836 AY378198 Extreme arid zone HX-IIF87 2.30.1.9.1.4.2.023 OTU 1 seq prokMSA_id:068759 AF479342 Glacial ice G200-C11 2.30.1.9.1.4.2.024 OTU 1 seq prokMSA_id:075120 AY154578 earthworm cast clone c220 2.30.1.9.1.4.2.025 OTU 1 seq prokMSA_id:079297 AY187316 clone csbio160358 2.30.1.9.1.4.2.026 OTU 1 seq prokMSA_id:079881 AJ544063 Cryobacterium psychrophilum strain DSM 4854 2.30.1.9.1.4.2.027 OTU 3 seqs prokMSA_id:080754 AF468262 clone ARKDMS-27 prokMSA_id:080323 AF468272 clone ARKCH4-90 prokMSA_id:080677 AF468440 Arctic sea ice ARK10173 2.30.1.9.1.4.2.028 OTU 1 seq prokMSA_id:081576 AY205295 Cellulomonas sp. CR1-1 2.30.1.9.1.4.2.029 OTU 2 seqs prokMSA_id:086460 AY177726 Microbacteriaceae HP5 prokMSA_id:082894 AY177729 Microbacteriaceae HP20a 2.30.1.9.1.4.2.030 OTU 2 seqs prokMSA_id:091542 AY336546 Frigoribacterium sp. pfB17 prokMSA_id:091366 AY336560 Frigoribacterium sp. pfB31 2.30.1.9.1.4.2.031 OTU 2 seqs prokMSA_id:096415 AY378220 Glacial ice ML-C4 prokMSA_id:098861 AY378270 Permafrost DT-IV25 2.30.1.9.1.4.2.032 OTU 1 seq prokMSA_id:096421 AJ575538 actinobacterium clone D2 2.30.1.9.1.4.2.033 OTU 1 seq prokMSA_id:096644 AY378232 Glacial ice MS-T10-03 2.30.1.9.1.4.2.999 poor quality 90 seqs prokMSA_id:037977 AB047133 ONG6 prokMSA_id:084531 AB098019 Actinobacterium ANRW14-2 prokMSA_id:083434 AB098020 Actinobacterium ANRW15-2 prokMSA_id:029066 AF018024 T2772c prokMSA_id:034656 AF078257 Grassland soil clone saf2_224 prokMSA_id:050037 AF078368 Grassland soil clone sl2_508 prokMSA_id:049944 AF078412 Grassland soil clone sl3_605 prokMSA_id:048036 AF128632 soil C012 prokMSA_id:073026 AF187311 JIII-15-98 prokMSA_id:051590 AF226166 Maize root ZmrIs1 prokMSA_id:074291 AF289150 firmicute clone PRD01a002B prokMSA_id:051723 AF428597 clone CRD99-19 prokMSA_id:059394 AF428663 clone CRP99-09 prokMSA_id:028663 AF428672 clone CRP99-18 prokMSA_id:038982 AF428689 clone CRP99-35 prokMSA_id:019570 AF428692 clone CRP99-38 prokMSA_id:049103 AF428704 clone CRP99-50 prokMSA_id:026853 AF428707 clone CRP99-53 prokMSA_id:037568 AF428708 clone CRP99-54 prokMSA_id:059393 AF428716 clone CRP99-62 prokMSA_id:059392 AF428717 clone CRP99-63 prokMSA_id:059391 AF428730 clone CRP99-76 prokMSA_id:045280 AF428768 clone CR98-5-38 prokMSA_id:025908 AF428808 clone CR98-24-02 prokMSA_id:030208 AF428879 clone CR98-24-73 prokMSA_id:059388 AF428886 clone CR98-35-04 prokMSA_id:033413 AF428901 clone CR98-35-19 prokMSA_id:050136 AF428920 clone CR98-35-38 prokMSA_id:027992 AF428923 clone CR98-35-41 prokMSA_id:049512 AF428924 clone CR98-35-42 prokMSA_id:035293 AF428947 clone CR98-35-65 prokMSA_id:016990 AF428948 clone CR98-35-66 prokMSA_id:048723 AF428969 clone CR99-35-11 prokMSA_id:030647 AF428985 clone CR99-35-27 prokMSA_id:059387 AF428993 clone CR99-35-35 prokMSA_id:023340 AF429002 clone CR99-35-44 prokMSA_id:052124 AF429044 clone CR99-7-10 prokMSA_id:029523 AF429079 clone CR99-7-45 prokMSA_id:040162 AF429129 clone CR99-24-19 prokMSA_id:024870 AF429143 clone CR99-24-33 prokMSA_id:076623 AF445361 actinobacterium ML110-16 prokMSA_id:076283 AF445362 actinobacterium ML110J-21 prokMSA_id:076738 AF445363 actinobacterium ML110J-32 prokMSA_id:080216 AF445366 actinobacterium ML1218M-12 prokMSA_id:080922 AF445367 actinobacterium ML310M-22 prokMSA_id:079715 AF445368 actinobacterium ML310M-30 prokMSA_id:079948 AF445369 actinobacterium ML310M-35 prokMSA_id:079346 AF447766 actinobacterium ML310M-47 prokMSA_id:079439 AF447770 actinobacterium ML516J-14 prokMSA_id:079469 AF447771 actinobacterium ML516J-4 prokMSA_id:079160 AF447772 actinobacterium ML602M-14 prokMSA_id:079289 AF447773 actinobacterium ML812M-11 prokMSA_id:079422 AF447774 actinobacterium ML812M-15 prokMSA_id:079520 AF447775 actinobacterium ML812M-28 prokMSA_id:079247 AF447777 actinobacterium ML817J-8 prokMSA_id:079854 AF448167 actinobacterium clone ML110J-22 prokMSA_id:080049 AF448174 actinobacterium clone ML310M-33 prokMSA_id:080657 AF448178 actinobacterium clone ML516J-3 prokMSA_id:080381 AF448179 actinobacterium clone ML516J-7 prokMSA_id:064171 AF477841 prokaryote isolate DGGE Band 54-UIB 11% pond prokMSA_id:081607 AF486489 actinobacterium ML602J-5 prokMSA_id:060502 AF488638 Gram-positive Z3 prokMSA_id:064509 AF517542 RiMSX131 prokMSA_id:057934 AF544326 actinobacterium isolate M29 prokMSA_id:070128 AJ132329 actinomycete clone DDGE band C prokMSA_id:018885 AJ309984 Actinobacterium dtb36 prokMSA_id:042343 AJ404514 SB3 prokMSA_id:051346 AJ404589 US8 prokMSA_id:034673 AJ409159 Actinobacterium dtb52 strain dtb52 prokMSA_id:046922 AJ437418 clone 1_34_121 prokMSA_id:066154 AJ487532 actinobacterium clone NCh25-RI16 prokMSA_id:062634 AJ504476 isolate P1CN05 prokMSA_id:062584 AJ504535 isolate P1CN77 prokMSA_id:076984 AJ517835 Rathayibacter sp. E66 strain E66 prokMSA_id:081040 AJ550439 clone AS 16 prokMSA_id:085052 AJ557836 clone B16 prokMSA_id:093330 AJ582571 clone G4 prokMSA_id:038539 AY039458 Earthworm cast C11M1 prokMSA_id:027498 AY039823 Frigoribacterium sp. jshs33 prokMSA_id:086232 AY177728 Microbacteriaceae HP20 prokMSA_id:081046 AY193960 clone SC121 prokMSA_id:085284 AY275510 Actinobacterium MSB2131 isolate MSB2131 prokMSA_id:086106 AY275511 Actinobacterium MSB2127 isolate MSB2127 prokMSA_id:083722 AY275519 Actinobacterium MSB3012 isolate MSB3012 prokMSA_id:091769 AY336534 Actinobacterium pfB5 prokMSA_id:091827 AY336535 Frigoribacterium sp. pfB6 prokMSA_id:093262 AY358012 Actinobacterium iRIV12 prokMSA_id:094179 AY364021 Actinobacterium iEII7 prokMSA_id:096298 AY378192 Extreme arid zone HX-IIF22 prokMSA_id:012277 D45058 Cryobacterium psychrophilum str. 27-O-b JCM 1463 . 2.30.1.9.1.4.3 CUB.CITREUM_SUBGROUP 88 seqs 2.30.1.9.1.4.3.001 OTU 29 seqs prokMSA_id:025955 AB027700 Curtobacterium sp. B9 prokMSA_id:035312 AB042086 Curtobacterium sp. VKM Ac-1376 prokMSA_id:051851 AB042087 Curtobacterium sp. VKM Ac-1387 prokMSA_id:074824 AB042088 Curtobacterium sp. VKM Ac-1809 prokMSA_id:030962 AB042089 Curtobacterium sp. VKM Ac-1811 prokMSA_id:027533 AB042091 Curtobacterium sp. VKM Ac-2056 prokMSA_id:017229 AB046363 Curtobacterium albidum prokMSA_id:071860 AB046364 Curtobacterium sp. IFO 12674T prokMSA_id:017773 AF190221 Curtobacterium sp. RSppiD3 prokMSA_id:024970 AF348972 Curtobacterium flaccumfaciens pv. flaccumfaciens strain 558 prokMSA_id:027682 AF348973 Curtobacterium flaccumfaciens pv. flaccumfaciens strain 2584 prokMSA_id:023865 AF348974 Curtobacterium flaccumfaciens pv. betae prokMSA_id:027058 AF348975 Curtobacterium flaccumfaciens pv. oorti prokMSA_id:033904 AF348976 Curtobacterium flaccumfaciens pv. poinsettiae prokMSA_id:066584 AF474329 Curtobacterium sp. SG041 prokMSA_id:062995 AF526909 Curtobacterium flaccumfaciens strain 48v2 rrn prokMSA_id:059541 AF538747 CAGY8 strain CAGY8 prokMSA_id:041734 AJ310414 Curtobacterium flaccumfaciens strain P 259/26 prokMSA_id:051971 AJ312209 Curtobacterium flaccumfaciens pv. flaccumfaciens strain LMG3645 prokMSA_id:077377 AY167854 Curtobacterium flaccumfaciens strain SAFR-008 prokMSA_id:077520 AY167857 Curtobacterium flaccumfaciens strain SAFR-003 prokMSA_id:077447 AY167859 Curtobacterium flaccumfaciens strain SAFR-001 prokMSA_id:083268 AY273208 Curtobacterium flaccumfaciens pv. beticila prokMSA_id:084851 AY273210 Curtobacterium flaccumfaciens pv. basellae prokMSA_id:087254 AY278888 Curtobacterium sp. T2-21 prokMSA_id:086741 AY278943 Curtobacterium sp. TB9 prokMSA_id:098795 AY395035 Bacteroidetes clone NAB31 prokMSA_id:012299 X77436 Curtobacterium citreum DSM 20528 . prokMSA_id:012298 X77437 Curtobacterium luteum DSM 20542 . 2.30.1.9.1.4.3.002 OTU 9 seqs prokMSA_id:080508 AE016850 Tropheryma whipplei str. Twist section 1 of 3 of the complete genome prokMSA_id:040919 AF190687 Tropheryma whippelii from patient 2 operon complete prokMSA_id:025685 AF190688 Tropheryma whippelii from patient 3 operon complete prokMSA_id:046722 AF202891 Tropheryma whippelii prokMSA_id:039437 AF251035 Tropheryma whippelii prokMSA_id:084780 AJ551273 Tropheryma whippelii IGS and 23S prokMSA_id:080600 BX251412 Tropheryma whipplei TW08/27 complete genome; segment 3/3 prokMSA_id:079992 NC_004572 Tropheryma whipplei str. Twist complete genome prokMSA_id:012297 X99636 Tropheryma whippelii 23S 5S genes and IGS isolated from patient 1 2.30.1.9.1.4.3.003 OTU 4 seqs prokMSA_id:012291 AB012589 IFO 15614. prokMSA_id:012294 AB012592 IFO 15777. prokMSA_id:012296 AB012595 unnamed organism. prokMSA_id:021404 AJ251780 Brevibacterium equis 2.30.1.9.1.4.3.004 OTU 2 seqs prokMSA_id:012292 AB012590 IFO 15616. prokMSA_id:012295 AB012593 IFO 15702. 2.30.1.9.1.4.3.005 OTU 2 seqs prokMSA_id:012293 AB012591 IFO 15706. prokMSA_id:023409 AF300651 Corynebacterium bovis 2.30.1.9.1.4.3.006 OTU 3 seqs prokMSA_id:096597 AY395277 A-S-20 prokMSA_id:095548 AY395282 A-F-12 prokMSA_id:012290 X77440 Brevibacterium "helvolum" DSM 20419. 2.30.1.9.1.4.3.007 OTU 1 seq prokMSA_id:073379 AJ306835 actinomycete isolate ON4 2.30.1.9.1.4.3.008 OTU 1 seq prokMSA_id:074957 AY154610 earthworm cast clone c256 2.30.1.9.1.4.3.009 OTU 1 seq prokMSA_id:082494 AY250879 actinobacterium clone FBP391 2.30.1.9.1.4.3.010 OTU 4 seqs prokMSA_id:090772 AJ565415 Actinobacterium MWH-Dar1 isolate MWH-Dar1 prokMSA_id:088901 AJ565417 Actinobacterium MWH-VicMua1 isolate MWH-VicMua1 prokMSA_id:096614 AJ575503 actinobacterium clone R7 prokMSA_id:098654 AJ575540 actinobacterium clone W1 2.30.1.9.1.4.3.011 OTU 2 seqs prokMSA_id:097391 AJ575510 actinobacterium clone S9 prokMSA_id:095650 AJ575514 actinobacterium clone S13 2.30.1.9.1.4.3.012 OTU 4 seqs prokMSA_id:096696 AJ575500 actinobacterium clone R4 prokMSA_id:096502 AJ575544 actinobacterium clone NZ1 prokMSA_id:097102 AJ575552 actinobacterium clone SW8 prokMSA_id:096894 AJ575559 actinobacterium clone NO7 2.30.1.9.1.4.3.999 poor quality 26 seqs prokMSA_id:044371 AB027696 Curtobacterium sp. B8 prokMSA_id:033998 AB027697 Curtobacterium sp. B26 prokMSA_id:048204 AB027698 Curtobacterium sp. B14 prokMSA_id:034784 AB027699 Curtobacterium sp. B18 prokMSA_id:047258 AF018002 T2703a prokMSA_id:080666 AF448169 actinobacterium clone ML110J-18 prokMSA_id:065386 AF511520 Brevibacterium helvolum prokMSA_id:018047 AJ233562 clone WR179 prokMSA_id:024621 AJ292914 WR857 clone WR857 prokMSA_id:023619 AJ298939 Curtobacterium citreum strain d28 prokMSA_id:093371 AJ581989 Curtobacterium flaccumfaciens strain 3Pe2-14 prokMSA_id:059362 AY081209 DGGE band U3 prokMSA_id:060906 AY135861 clone SG1-6 prokMSA_id:082758 AY275506 Actinobacterium MSB3004 isolate MSB3004 prokMSA_id:086934 AY278912 Curtobacterium sp. T5-18 prokMSA_id:087150 AY278927 Curtobacterium sp. TB21 prokMSA_id:088550 AY307369 Curtobacterium sp. M84 prokMSA_id:094153 AY357998 Actinobacterium iRII14 prokMSA_id:094186 AY357999 Actinobacterium iRII17 prokMSA_id:093663 AY358003 Actinobacterium iRIII11 prokMSA_id:093359 AY358011 Actinobacterium iRIV11 prokMSA_id:093905 AY358019 Actinobacterium iRV16 prokMSA_id:094101 AY364017 Actinobacterium iEI7 prokMSA_id:093216 AY364061 actinobacterium clone cRI18d prokMSA_id:095846 AY378231 Glacial ice MS-T10-02 prokMSA_id:030471 U78940 Marine R2A160 2.30.1.9.1.5 CELLULOMONAS_SUBGROUP 536 seqs 2.30.1.9.1.5.1 CLLM.FLAVIGENA_SUBGROUP 221 seqs 2.30.1.9.1.5.1.001 OTU 3 seqs prokMSA_id:012357 AB023361 Cellulomonas sp. IFO16240 prokMSA_id:012355 AB023362 Cellulomonas sp. IFO16241 prokMSA_id:012325 AB023367 Cellulomonas sp. IFO16246 2.30.1.9.1.5.1.002 OTU 4 seqs prokMSA_id:012321 X79460 Cellulomonas fimi DSM 20113 . prokMSA_id:012331 X79462 Cellulomonas biazotea DSM 20112 . prokMSA_id:012334 X83802 Cellulomonas biazotea. prokMSA_id:012348 X83803 Cellulomonas fimi. 2.30.1.9.1.5.1.006 OTU 1 seq prokMSA_id:012344 AF170785 Cellulomonas Cellulomonas sp. QSSC9L-7. 2.30.1.9.1.5.1.008 OTU 10 seqs prokMSA_id:025310 AB078818 Cellulomonadaceae str. K3 prokMSA_id:039459 AB078838 Cellulomonadaceae str. W6 prokMSA_id:042732 AB078856 Cellulomonadaceae str. WB18 prokMSA_id:012345 AJ229241 str. PB90-5. prokMSA_id:012346 AJ229245 str. VeCb6. prokMSA_id:012347 AJ229252 str. KCB45. prokMSA_id:062002 AJ244671 Cellulomonas sp. V4.BO.29 prokMSA_id:077444 AY167843 Cellulomonas fermentans strain SAFR-046 prokMSA_id:012343 X79458 Cellulomonas fermentans DSM 3133 . prokMSA_id:012322 X83805 Cellulomonas fermentans. 2.30.1.9.1.5.1.009 OTU 5 seqs prokMSA_id:047463 AF282627 Cellulomonas gelida complete prokMSA_id:012320 X79457 Cellulomonas uda NCIMB 8200 . prokMSA_id:012329 X79461 Cellulomonas gelida NCIMB 8076 . prokMSA_id:012338 X83800 Cellulomonas gelida. prokMSA_id:012342 X83801 Cellulomonas uda. 2.30.1.9.1.5.1.010 OTU 1 seq prokMSA_id:012341 AF142834 clone BURTON-14. 2.30.1.9.1.5.1.011 OTU 8 seqs prokMSA_id:024025 AF237956 Cellulomonas sp. UFZ-B529 prokMSA_id:024741 AJ314848 Oerskovia jenensis strain DSM 46000 prokMSA_id:054867 AJ314849 Oerskovia jenensis strain DSM 46001 prokMSA_id:052623 AJ314850 Oerskovia jenensis strain DSM 46097 prokMSA_id:032173 AJ314851 Oerskovia paurometabola strain DSM 14281 prokMSA_id:012340 X79454 Cellulomonas turbata NCIMB 10587 . prokMSA_id:012328 X83806 Cellulomonas turbata. prokMSA_id:012339 X83807 Promicromonospora enterophila. 2.30.1.9.1.5.1.012 OTU 5 seqs prokMSA_id:012337 AB023360 Cellulomonas IFO16239 IFO 16239. prokMSA_id:012304 AB023363 Cellulomonas IFO16242 IFO 16242. prokMSA_id:012305 AB023364 Cellulomonas IFO16243 IFO 16243. prokMSA_id:012306 AB023365 Cellulomonas IFO16244 IFO 16244. prokMSA_id:012307 AB023366 Cellulomonas IFO16245 IFO 16245. 2.30.1.9.1.5.1.013 OTU 2 seqs prokMSA_id:052667 AJ298873 Cellulomonas variformis strain MX5 prokMSA_id:012336 X87310 str. SR 272. 2.30.1.9.1.5.1.014 OTU 16 seqs prokMSA_id:072122 AB004731 Cellulomonas sp. complete strain 16063T prokMSA_id:012302 AB023354 Cellulomonas cellulans IFO 15013. prokMSA_id:012303 AB023355 Cellulomonas cellulans IFO 16148. prokMSA_id:073058 AB056131 Promicromonospora sp. IFO 16225 prokMSA_id:077900 AB098580 Cellulosimicrobium cellulans prokMSA_id:083742 AB109293 Cellulosimicrobium cellulans prokMSA_id:025449 AF131357 Cellulomonas sp. IM-8170 prokMSA_id:041760 AF306540 Cellulomonas cellulans prokMSA_id:084538 AF500208 Cellulomonas sp. CJ10597 prokMSA_id:026533 AJ313025 Cellulomonas sp. MN 60.3 isolate MN 60.3 prokMSA_id:044339 AJ315029 Cellulomonas variformis clone KHC4 prokMSA_id:055343 AY114178 Cellulosimicrobium cellulans strain AS 4.1333 prokMSA_id:012309 X79453 Oerskovia xanthineolytica NCIMB 11025. prokMSA_id:012301 X79455 Cellulomonas cellulans DSM 43879. prokMSA_id:012308 X79456 Cellulomonas cellulans str. MSD 20106. prokMSA_id:012335 X83809 Cellulomonas cellulans. 2.30.1.9.1.5.1.015 OTU 4 seqs prokMSA_id:038546 AJ252580 Agricultural soil isolate SI-13 prokMSA_id:034035 AJ252581 Agricultural soil isolate SI-14 prokMSA_id:088451 AY303668 Cellulomonas xylanilytica complete prokMSA_id:012333 X82449 Actinomyces humiferus NCTC 25174. 2.30.1.9.1.5.1.016 OTU 1 seq prokMSA_id:012332 AJ245568 Cellulomonas GM13 str. GM13. 2.30.1.9.1.5.1.017 OTU 18 seqs prokMSA_id:029389 AB078822 Cellulomonadaceae str. K8 prokMSA_id:052372 AB078823 Cellulomonadaceae str. K10 prokMSA_id:025340 AB078834 Cellulomonadaceae str. Ke prokMSA_id:042792 AB078840 Cellulomonadaceae str. W10 prokMSA_id:042537 AB078844 Cellulomonadaceae str. WB6 prokMSA_id:039890 AB078845 Cellulomonadaceae str. WB7 prokMSA_id:030724 AB078846 Cellulomonadaceae str. WB8 prokMSA_id:032484 AB078847 Cellulomonadaceae str. WB9 prokMSA_id:047814 AB078848 Cellulomonadaceae str. WB10 prokMSA_id:047319 AB078850 Cellulomonadaceae str. WB12 prokMSA_id:026813 AB078851 Cellulomonadaceae str. WB13 prokMSA_id:050055 AB078852 Cellulomonadaceae str. WB14 prokMSA_id:028551 AB078853 Cellulomonadaceae str. WB15 prokMSA_id:024202 AB078854 Cellulomonadaceae str. WB16 prokMSA_id:030843 AB078855 Cellulomonadaceae str. WB17 prokMSA_id:061987 AJ292035 Cellulomonas sp. d6 strain d6 prokMSA_id:012300 X79459 Cellulomonas cellasea DSM 20118 . prokMSA_id:012330 X83804 Cellulomonas cellasea. 2.30.1.9.1.5.1.018 OTU 4 seqs prokMSA_id:068735 AF479365 Glacial ice SB12K-6-2 prokMSA_id:012324 X82598 Cellulomonas hominis str. DMMZ CE40 CDC group A-3 DSM 9581 . prokMSA_id:012326 Y09658 Cellulomonas sp. str. 1533. prokMSA_id:012327 Y09659 Cellulomonas sp. str. 1781. 2.30.1.9.1.5.1.020 OTU 1 seq prokMSA_id:012319 AF064702 Cellulomonas iranensis str. O. 2.30.1.9.1.5.1.022 OTU 5 seqs prokMSA_id:012318 AF064701 Cellulomonas persica str. I. prokMSA_id:012316 AF140036 Cellulomonas flavigena str. GG. prokMSA_id:012315 X79463 Cellulomonas flavigena NCIMB 8073 . prokMSA_id:012323 X83799 Cellulomonas flavigena. prokMSA_id:012317 Y09656 Cellulomonas sp. str. 794. 2.30.1.9.1.5.1.023 OTU 7 seqs prokMSA_id:012313 AB023353 Promicromonospora sukumoe IFO 15062. prokMSA_id:012314 AB023375 Promicromonospora sukumoe IFO 14650. prokMSA_id:071309 AB056130 Promicromonospora sukumoe prokMSA_id:012311 AF060791 Cellulomonas X7 str. X7. prokMSA_id:022867 AJ272024 Promicromonospora sukumoe strain DSM 44121 prokMSA_id:072500 AJ487302 Promicromonospora vindobonesis strain V-45T prokMSA_id:012310 X83808 Promicromonospora citrea. 2.30.1.9.1.5.1.024 OTU 1 seq prokMSA_id:012312 AF105422 Cellulomonas pachnodae str. VPCX2. 2.30.1.9.1.5.1.025 OTU 1 seq prokMSA_id:017507 AB062830 clone:BCf6-05 2.30.1.9.1.5.1.026 OTU 4 seqs prokMSA_id:029059 AB078821 Cellulomonadaceae str. K6 prokMSA_id:024489 AB078824 Cellulomonadaceae str. K12 prokMSA_id:018563 AB078828 Cellulomonadaceae str. KB8 prokMSA_id:019709 AB078857 Cellulomonadaceae str. Wa 2.30.1.9.1.5.1.027 OTU 2 seqs prokMSA_id:024497 AF356021 clone S35 prokMSA_id:091603 AY344423 clone L3-35 2.30.1.9.1.5.1.028 OTU 1 seq prokMSA_id:026352 Y18378 Beutenbergia cavernosa 2.30.1.9.1.5.1.029 OTU 2 seqs prokMSA_id:072333 AB004732 Cellulomonas sp. complete strain IFO16064T prokMSA_id:029639 AB004733 Cellulomonas sp. complete strain IFO16066 2.30.1.9.1.5.1.030 OTU 1 seq prokMSA_id:032157 AB078836 Cellulomonadaceae str. W2 2.30.1.9.1.5.1.031 OTU 1 seq prokMSA_id:058582 AJ508455 Actinomyces nasicol strain CCUG 46092 2.30.1.9.1.5.1.032 OTU 1 seq prokMSA_id:037000 AF328189 clone KS48 2.30.1.9.1.5.1.033 OTU 1 seq prokMSA_id:038534 AB078841 Actinobacterium WB2 2.30.1.9.1.5.1.034 OTU 1 seq prokMSA_id:039609 AF131479 Promicromonospora sp. IM-0635 2.30.1.9.1.5.1.035 OTU 1 seq prokMSA_id:039735 AJ298927 Cellulomonas sp. d20 strain d20 2.30.1.9.1.5.1.036 OTU 1 seq prokMSA_id:040050 AF328226 clone KS95 2.30.1.9.1.5.1.037 OTU 1 seq prokMSA_id:040713 AF287753 Dermabacter sp. oral strain B46KS 2.30.1.9.1.5.1.038 OTU 1 seq prokMSA_id:043619 AB078849 Cellulomonadaceae str. WB11 2.30.1.9.1.5.1.039 OTU 1 seq prokMSA_id:044206 AJ400627 Salana multivorans strain Se-3111 2.30.1.9.1.5.1.040 OTU 1 seq prokMSA_id:045648 AJ277688 ARFS-4 2.30.1.9.1.5.1.041 OTU 1 seq prokMSA_id:046611 X92152 sp. Lake Bogoria isolate 69B4 2.30.1.9.1.5.1.042 OTU 1 seq prokMSA_id:062747 AF403541 Xylanomonas cellulosilytica 2.30.1.9.1.5.1.043 OTU 1 seq prokMSA_id:067658 AJ300767 Arcanobacterium hippocoleae strain CCUG 44697 2.30.1.9.1.5.1.044 OTU 3 seqs prokMSA_id:079056 AB094466 Georgenia sp. 2216.35.28 prokMSA_id:070481 AJ308598 Georgenia sp. strain 3A-1 prokMSA_id:073976 X94155 Georgenia muralis strain 1A-C 2.30.1.9.1.5.1.045 OTU 1 seq prokMSA_id:071022 AB056129 Rarobacter incanus 2.30.1.9.1.5.1.046 OTU 3 seqs prokMSA_id:080247 AF468233 clone ARKCH2Br2-13 prokMSA_id:080107 AF468234 clone ARKCH2Br2-52 prokMSA_id:080505 AF468240 clone ARKCH2Br2-66 2.30.1.9.1.5.1.047 OTU 1 seq prokMSA_id:081680 AY218565 clone KD1-70 2.30.1.9.1.5.1.048 OTU 1 seq prokMSA_id:081704 AY080989 Cellulomonas sp. clone ckl27 2.30.1.9.1.5.1.049 OTU 1 seq prokMSA_id:081808 AY218605 clone KD3-138 2.30.1.9.1.5.1.050 OTU 1 seq prokMSA_id:086751 AY273185 Xylanibacterium ulmi complete 2.30.1.9.1.5.1.051 OTU 1 seq prokMSA_id:088945 AY297773 Cellulomonadaceae 10001 2.30.1.9.1.5.1.052 OTU 1 seq prokMSA_id:091162 AY345426 K2-27 2.30.1.9.1.5.1.053 OTU 1 seq prokMSA_id:092021 AY344422 clone L6-16 2.30.1.9.1.5.1.054 OTU 1 seq prokMSA_id:095543 AJ575549 actinobacterium clone SW5 2.30.1.9.1.5.1.055 OTU 1 seq prokMSA_id:096557 AJ575533 actinobacterium clone N6 2.30.1.9.1.5.1.056 OTU 1 seq prokMSA_id:097651 AY378259 Permafrost DT-IIK29 2.30.1.9.1.5.1.999 poor quality 84 seqs prokMSA_id:074825 AB054828 Terrabacter sp. 1196b prokMSA_id:074501 AB054829 Terrabacter sp. 1254 prokMSA_id:030488 AB054913 Cellulomonas sp. 1248 prokMSA_id:070034 AB081584 Cellulomonadaceae str. A4c prokMSA_id:037675 AF016725 soil clone S-10 prokMSA_id:043146 AF078242 Grassland soil clone saf2_208 prokMSA_id:050414 AF078377 Grassland soil clone sl2_517 prokMSA_id:017650 AF078379 Grassland soil clone sl2_519 prokMSA_id:039679 AF124650 Px12-DGGE band d prokMSA_id:071143 AF124651 Px12-DGGE band c prokMSA_id:070001 AF124655 Px2-DGGE band c prokMSA_id:043288 AF143761 actinomycete clone A20 prokMSA_id:027094 AF240133 Grassland soil TSA-7 prokMSA_id:052917 AF428612 clone CRD99-34 prokMSA_id:037003 AF428626 clone CRD99-48 prokMSA_id:032198 AF428661 clone CRP99-07 prokMSA_id:016321 AF428665 clone CRP99-11 prokMSA_id:050321 AF428683 clone CRP99-29 prokMSA_id:052257 AF428684 clone CRP99-30 prokMSA_id:033795 AF428722 clone CRP99-68 prokMSA_id:032221 AF428746 clone CR98-5-16 prokMSA_id:036964 AF428771 clone CR98-5-41 prokMSA_id:042717 AF428774 clone CR98-5-44 prokMSA_id:019160 AF428780 clone CR98-5-50 prokMSA_id:036803 AF428807 clone CR98-24-01 prokMSA_id:054363 AF428821 clone CR98-24-15 prokMSA_id:019419 AF428830 clone CR98-24-24 prokMSA_id:052860 AF428868 clone CR98-24-62 prokMSA_id:024362 AF428870 clone CR98-24-64 prokMSA_id:029485 AF428889 clone CR98-35-07 prokMSA_id:017486 AF428933 clone CR98-35-51 prokMSA_id:042199 AF428973 clone CR99-35-15 prokMSA_id:049463 AF429019 clone CR99-35-61 prokMSA_id:053564 AF429056 clone CR99-7-22 prokMSA_id:029723 AF429118 clone CR99-24-08 prokMSA_id:037762 AF429165 clone CR99-24-55 prokMSA_id:044721 AF429184 clone CR99-24-74 prokMSA_id:088492 AF491900 Actinomycete symbiont 4 of Acromyrmex octospinosus prokMSA_id:062702 AF507851 actinobacterium clone ML602J-38 prokMSA_id:066138 AF510046 MF35 prokMSA_id:065342 AF513617 clone Dpcom12 prokMSA_id:074604 AJ289929 1204-39l prokMSA_id:069951 AJ289948 1605-35 prokMSA_id:031606 AJ289955 404-11 prokMSA_id:070309 AJ289957 404-23 prokMSA_id:030733 AJ292911 WR831 clone WR831 prokMSA_id:036734 AJ292912 WR840 clone WR840 prokMSA_id:018431 AJ292913 WR842 clone WR842 prokMSA_id:025429 AJ296274 Cellulomonas sp. KMaC5 prokMSA_id:042590 AJ298936 Cellulomonas turbata strain d11 prokMSA_id:073134 AJ313329 Cellulomonas sp. KNec1 isolate KNec1 prokMSA_id:033090 AJ344531 Cellulomonas turbata strain MBT2 prokMSA_id:044611 AJ400565 clone G4-K20 prokMSA_id:073136 AJ487303 Promicromonospora aerolata strain V-54AT prokMSA_id:064711 AJ489365 Oerskovia sp. Lgg15.9 strain Lgg15.9 prokMSA_id:059973 AJ507515 clone VEL1-98 prokMSA_id:059972 AJ507517 clone VEL8-99 prokMSA_id:057531 AJ516055 Brevibacteriacium sp. L1/9B strain L1/9B prokMSA_id:082078 AJ550440 clone AS 50 prokMSA_id:087083 AJ561132 actinobacterium clone ANT-RB 58 prokMSA_id:094944 AJ582249 Cellulomonadaceae clone AC51 prokMSA_id:069894 AY006569 rumen prokMSA_id:020813 AY039457 Earthworm burrow B6D2 prokMSA_id:031401 AY039465 Earthworm cast NC13 prokMSA_id:052090 AY039494 Soil S62M2 prokMSA_id:034519 AY039501 Soil S81M1 prokMSA_id:061369 AY043874 actinobacterium clone SMW4.135WL prokMSA_id:062326 AY124383 actinobacterium clone ASa05 prokMSA_id:071898 AY143715 Cellulomonas sp. clone Lu97 prokMSA_id:055396 AY143730 Cellulomonas sp. clone V1 prokMSA_id:069483 AY143754 Intrasporangiaceae clone Lur7 prokMSA_id:073578 AY143773 Cellulomonadaceae clone Lur86 prokMSA_id:075531 AY150962 actinobacterium clone uvi17 prokMSA_id:076929 AY150968 actinobacterium clone uvi37 prokMSA_id:076140 AY157085 Gram-positive isolate WB-16 prokMSA_id:079204 AY186852 actinobacterium clone uvi17 prokMSA_id:079279 AY186858 actinobacterium clone uvi37 prokMSA_id:087394 AY226109 DGGE gel band e66' prokMSA_id:087067 AY274234 actinobacterium isolate DGGE band GWS-FL-8 prokMSA_id:082521 AY275520 Cellulomonas sp. MSB3037 prokMSA_id:088926 AY321976 Georgenia sp. BR3 prokMSA_id:089174 AY327194 clone ZB138 prokMSA_id:020868 X86604 sp. strain AC-41 prokMSA_id:023053 X86653 Streptomyces sp. strain AG-07 2.30.1.9.1.5.2 STR.MEDIEVAL_SUBGROUP 4 seqs 2.30.1.9.1.5.2.001 OTU 1 seq prokMSA_id:012350 X94155 unnamed organism. 2.30.1.9.1.5.2.002 OTU 1 seq prokMSA_id:085310 AY239537 clone CARB_ESS_6 2.30.1.9.1.5.2.003 OTU 1 seq prokMSA_id:085311 AY239544 clone CARB_ESS_13 2.30.1.9.1.5.2.999 poor quality 1 seq prokMSA_id:012349 L09057 clone CY 44. 2.30.1.9.1.5.3 SGB.INULINUS_SUBGROUP 165 seqs 2.30.1.9.1.5.3.001 OTU 5 seqs prokMSA_id:038749 AF371710 clone p-3370-23G2 prokMSA_id:012361 X79450 Sanguibacter keddieii str. ST-74 ATCC 51767 . prokMSA_id:012356 X79451 Sanguibacter inulinus str. ST-50 NCFB 3024 . prokMSA_id:012353 X79452 Sanguibacter suarezii str. ST-26. prokMSA_id:012358 Y09657 Sanguibacter sp. str. 1234. 2.30.1.9.1.5.3.002 OTU 2 seqs prokMSA_id:016565 AB031628 gram-positive TIHP368-02 prokMSA_id:012360 AJ241019 clone Sva1007. 2.30.1.9.1.5.3.003 OTU 1 seq prokMSA_id:012359 AJ240976 clone Sva0389. 2.30.1.9.1.5.3.004 OTU 1 seq prokMSA_id:012354 U85190 clone ACK-M1. 2.30.1.9.1.5.3.005 OTU 1 seq prokMSA_id:016619 AF316647 Crater Lake CL0-42 2.30.1.9.1.5.3.006 OTU 1 seq prokMSA_id:071979 AJ289988 FukuN105 2.30.1.9.1.5.3.008 OTU 20 seqs prokMSA_id:035381 AF316648 Crater Lake CL0-47 prokMSA_id:021976 AF316660 Crater Lake CL500-17 prokMSA_id:084180 AF534430 actinobacterium clone TLM06/TLMdgge30 prokMSA_id:023427 AJ289996 FukuN30 prokMSA_id:031769 AJ290004 FukuN44 prokMSA_id:032861 AJ290008 FukuN8 prokMSA_id:045942 AJ290024 GKS2-103 prokMSA_id:050803 AJ290031 GKS2-189 prokMSA_id:096076 AJ575499 actinobacterium clone R3 prokMSA_id:096268 AJ575501 actinobacterium clone R5 prokMSA_id:096722 AJ575513 actinobacterium clone S12 prokMSA_id:097567 AJ575532 actinobacterium clone N5 prokMSA_id:095931 AJ575545 actinobacterium clone NZ2 prokMSA_id:097083 AJ575546 actinobacterium clone SW1 prokMSA_id:095369 AJ575547 actinobacterium clone SW2 prokMSA_id:095275 AJ575550 actinobacterium clone SW6 prokMSA_id:098434 AJ575551 actinobacterium clone SW7 prokMSA_id:097386 AJ575555 actinobacterium clone NO1 prokMSA_id:096171 AJ575556 actinobacterium clone NO3 prokMSA_id:060850 AY135928 clone SG2-138 2.30.1.9.1.5.3.010 OTU 1 seq prokMSA_id:055307 AJ416268 clone Sta5-26 2.30.1.9.1.5.3.011 OTU 9 seqs prokMSA_id:037439 AF316645 Crater Lake CL0-33 prokMSA_id:035564 AF316649 Crater Lake CL0-48 prokMSA_id:040740 AF316651 Crater Lake CL0-96 prokMSA_id:027163 AF316653 Crater Lake CL0-113 prokMSA_id:035026 AF316662 Crater Lake CL500-41 prokMSA_id:030520 AJ290029 GKS2-176 prokMSA_id:030090 AJ290039 GKS2-38 prokMSA_id:054833 AJ290041 GKS2-79 prokMSA_id:097119 AJ575508 actinobacterium clone S7 2.30.1.9.1.5.3.013 OTU 7 seqs prokMSA_id:069006 AF316643 Crater Lake CL0-2 prokMSA_id:046182 AF316646 Crater Lake CL0-39 prokMSA_id:051231 AF316650 Crater Lake CL0-64 prokMSA_id:052304 AF316652 Crater Lake CL0-105 prokMSA_id:027273 AF316657 Crater Lake CL120-55 prokMSA_id:042835 AF316658 Crater Lake CL120-62 prokMSA_id:022436 AF316667 Crater Lake CL500-99 2.30.1.9.1.5.3.014 OTU 1 seq prokMSA_id:029388 AF434940 sponge symbiont RSWS10 2.30.1.9.1.5.3.015 OTU 3 seqs prokMSA_id:072525 AB056127 Rarobacter faecitabidus strain:IFO 14760 prokMSA_id:073335 AB056128 Rarobacter faecitabidus strain:IFO 15223 prokMSA_id:037802 Y17870 Rarobacter faecitabidus 2.30.1.9.1.5.3.016 OTU 1 seq prokMSA_id:041145 AF316655 Crater Lake CL120-19 2.30.1.9.1.5.3.017 OTU 1 seq prokMSA_id:041456 AF316654 Crater Lake CL120-5 2.30.1.9.1.5.3.018 OTU 1 seq prokMSA_id:043920 AB031661 actinobacterium TIHP368-75 2.30.1.9.1.5.3.019 OTU 1 seq prokMSA_id:044712 AF316644 Crater Lake CL0-27 2.30.1.9.1.5.3.021 OTU 5 seqs prokMSA_id:021435 AF316659 Crater Lake CL120-137 prokMSA_id:053454 AF316664 Crater Lake CL500-67 prokMSA_id:056381 AF491664 actinomycete clone SFD1-21 prokMSA_id:060781 AF491671 actinomycete clone SFD1-38 prokMSA_id:061730 AJ416212 clone Sta2-30 2.30.1.9.1.5.3.022 OTU 1 seq prokMSA_id:059844 AJ507791 clone LES-138 2.30.1.9.1.5.3.023 OTU 1 seq prokMSA_id:059845 AJ507790 clone BUG-57 2.30.1.9.1.5.3.024 OTU 1 seq prokMSA_id:060791 AF491663 actinomycete clone SFD1-20 2.30.1.9.1.5.3.025 OTU 1 seq prokMSA_id:068758 AF479343 Glacial ice G200-C18 2.30.1.9.1.5.3.026 OTU 1 seq prokMSA_id:072286 AJ290036 GKS61 2.30.1.9.1.5.3.027 OTU 1 seq prokMSA_id:077691 AB089082 Actinobacteridae clone:Rs-Q71 2.30.1.9.1.5.3.028 OTU 1 seq prokMSA_id:077790 AB089076 Actinobacteridae clone:Rs-M95 2.30.1.9.1.5.3.029 OTU 1 seq prokMSA_id:087160 AY289118 CHPR4 2.30.1.9.1.5.3.030 OTU 1 seq prokMSA_id:095992 AJ536838 clone 253 2.30.1.9.1.5.3.031 OTU 1 seq prokMSA_id:096951 AJ575530 actinobacterium clone N3 2.30.1.9.1.5.3.032 OTU 1 seq prokMSA_id:098560 AY375106 clone C47 2.30.1.9.1.5.3.999 poor quality 93 seqs prokMSA_id:030721 AB010620 firmicute clone ASB017 prokMSA_id:036591 AB010621 firmicute clone ASB019 prokMSA_id:074475 AB054900 Sanguibacter sp. 1161 prokMSA_id:056121 AF107500 SY1-40 prokMSA_id:072953 AF107509 SY2-33 prokMSA_id:018548 AF107524 SY4-1 prokMSA_id:023438 AF141389 actinomycete clone CR-FL3 prokMSA_id:040821 AF141426 actinomycete prokMSA_id:051724 AF141442 actinomycete clone CRE-FL13 prokMSA_id:041773 AF141445 actinomycete clone CRE-FL18 prokMSA_id:033882 AF141484 actinomycete clone CRE-FL70 prokMSA_id:050118 AF141587 actinomycete clone CRO-FL9 prokMSA_id:036766 AF141592 actinomycete clone CRO-FL14 prokMSA_id:070962 AF187309 JIII-07-98 prokMSA_id:069964 AF187312 JIII-17-98 prokMSA_id:016667 AF268296 firmicute ESR 12 prokMSA_id:048064 AF311996 isolate DGGE-2 prokMSA_id:038179 AF311997 isolate DGGE-3 prokMSA_id:030078 AF316661 Crater Lake CL500-32 prokMSA_id:049772 AF316663 Crater Lake CL500-58 prokMSA_id:029591 AF316666 Crater Lake CL500-96 prokMSA_id:037284 AF332260 clone C12-2 prokMSA_id:016973 AF337197 clone LCo21 prokMSA_id:024164 AF337198 clone LCo22 prokMSA_id:026950 AF337205 clone LCo39 prokMSA_id:033695 AF337208 clone LCo72 prokMSA_id:030660 AF337213 clone LCo78 prokMSA_id:043032 AF361179 actinobacterium prokMSA_id:068164 AF365568 clone BT49MF4BE1 prokMSA_id:068050 AF365695 clone BT60DS1BC5 prokMSA_id:068049 AF365700 clone BT60DS1BD2 prokMSA_id:067928 AF365846 clone BT60PA10BE9 prokMSA_id:025560 AF434941 sponge symbiont RSWS12 prokMSA_id:060499 AF488643 Gram-positive Z8 prokMSA_id:060472 AF488669 Gram-positive Z34 prokMSA_id:060473 AF488670 Gram-positive clone Z35 prokMSA_id:056477 AF488673 Gram-positive clone Z38 prokMSA_id:060468 AF488674 Gram-positive clone Z39 prokMSA_id:066441 AF497875 actinobacterium isolate WB5-41 prokMSA_id:066438 AF497876 actinobacterium isolate WB5-42 prokMSA_id:066424 AF497893 actinobacterium isolate WL5-10 prokMSA_id:074165 AF497896 actinobacterium isolate WL8-1 prokMSA_id:066419 AF497897 actinobacterium isolate WL11-2 prokMSA_id:061133 AF530126 isolate MGP DGGE Band 26 prokMSA_id:061132 AF530127 isolate MGP DGGE Band 27 prokMSA_id:072027 AF530947 Actinobacterium zj04 prokMSA_id:058798 AF540050 actinobacterium DGGE gel band ESR BR 15 prokMSA_id:058070 AF547396 actinobacterium clone CL-S63-226 prokMSA_id:039968 AJ231070 clone 32 prokMSA_id:022002 AJ240000 gram positive highGC strain DGGE band CIBAC-13 prokMSA_id:039781 AJ289938 1405-41 prokMSA_id:024690 AJ289944 1605-10 prokMSA_id:070711 AJ289950 25-4-33 prokMSA_id:040461 AJ289952 25-5-64 prokMSA_id:074028 AJ289953 25-5-69 prokMSA_id:071086 AJ289956 404-19 prokMSA_id:074749 AJ289959 404-45l prokMSA_id:045437 AJ289961 404-50 prokMSA_id:017904 AJ309914 Sanguibacter inulinus strain dtb 62 prokMSA_id:029234 AJ311507 gram positive Sau 6 prokMSA_id:088614 AJ315789 clone 9 prokMSA_id:061717 AJ416225 clone Sta3-20 prokMSA_id:061688 AJ416260 clone Sta5-14 prokMSA_id:058342 AJ489410 clone NS-G56 prokMSA_id:059847 AJ507788 clone BUG-153 prokMSA_id:098032 AJ583811 actinobacterium clone DGGE band 26 prokMSA_id:096433 AJ583814 actinobacterium clone DGGE band 35 prokMSA_id:034805 AY037582 soil clone S048 prokMSA_id:041815 AY037583 soil clone S049 prokMSA_id:066962 AY038576 clone CD2A6 prokMSA_id:046218 AY039475 Soil NS13 prokMSA_id:039663 AY039825 Sanguibacter keddieii strain jshs7 prokMSA_id:074811 AY124423 actinobacterium clone SAb11 prokMSA_id:060888 AY135884 clone SG1-111 prokMSA_id:069079 AY145574 actinobacterium clone DC5-0-1 prokMSA_id:070160 AY145575 actinobacterium clone DC5-0-2 prokMSA_id:070571 AY145576 actinobacterium clone DC5-0-3 prokMSA_id:074345 AY145607 actinobacterium clone DC11-0-6 prokMSA_id:069124 AY145608 actinobacterium clone DC11-0-7 prokMSA_id:073459 AY145612 actinobacterium clone DC11-0-15 prokMSA_id:085789 AY275516 Sanguibacter suarezii isolate MSB2114 prokMSA_id:088055 AY283127 actinobacterium clone NS-55 prokMSA_id:043395 D84615 Actinomycetes prokMSA_id:041726 U85176 actinomycetales clone ACK-C65 prokMSA_id:033495 U85177 actinomycetales clone ACK-M15 prokMSA_id:046737 U85178 actinomycetales clone ACK-M19 prokMSA_id:017744 U85179 actinomycetales clone ACK-SA3 prokMSA_id:036843 U85180 actinomycetales clone ACK-W8 prokMSA_id:030535 U85182 actinomycetales clone ACK-GR8 prokMSA_id:074269 U85187 actinomycetales clone ACK-C58 prokMSA_id:073588 U85188 actinomycetales clone ACK-M3 prokMSA_id:012352 X78634 clone SMK143. prokMSA_id:012351 X78650 clone SMK5. 2.30.1.9.1.5.4 TRB.TUMESCENS_SUBGROUP 146 seqs 2.30.1.9.1.5.4.001 OTU 4 seqs prokMSA_id:064018 AB087359 clone:F32 prokMSA_id:024661 AF005023 Terrabacter tumescens prokMSA_id:075243 AY154515 earthworm intestine clone ew42 prokMSA_id:012372 X83812 Terrabacter tumescens. 2.30.1.9.1.5.4.004 OTU 1 seq prokMSA_id:012369 AF170746 Janibacter QSSC8-6 str. QSSC8-6. 2.30.1.9.1.5.4.006 OTU 5 seqs prokMSA_id:018874 AF125090 Tetrasphaera australiensis strain 110 prokMSA_id:021157 AF125091 Tetrasphaera australiensis strain 109 prokMSA_id:043992 X85211 Nostocoida limicola II Ben17 strain prokMSA_id:029284 X85212 Nostocoida limicola II Ben18 strain prokMSA_id:026805 Y14597 Nostocoida limicola II strain Ben67 2.30.1.9.1.5.4.009 OTU 1 seq prokMSA_id:022538 AF109793 High G+C Gram-positive lpha7 2.30.1.9.1.5.4.010 OTU 1 seq prokMSA_id:024962 AF255628 clone Ebpr20 2.30.1.9.1.5.4.011 OTU 1 seq prokMSA_id:029636 Y17869 Ornithinicoccus hortensis 2.30.1.9.1.5.4.013 OTU 4 seqs prokMSA_id:030551 AF131371 Intrasporangium sp. IM-3749 prokMSA_id:090541 AJ566282 Intrasporangium calvum strain DSM 43043T prokMSA_id:075456 AY154509 earthworm intestine clone ew32 prokMSA_id:012364 Y11928 Terracoccus luteus DSM 44267 . 2.30.1.9.1.5.4.014 OTU 1 seq prokMSA_id:055532 AF467332 Terrabacter sp. clone 1593 2.30.1.9.1.5.4.018 OTU 15 seqs prokMSA_id:012371 AB030911 str. Lp2. prokMSA_id:046307 AB051430 Tetrasphaera elongata strain:ASP12 prokMSA_id:058688 AB072496 Lochheadia duodecas prokMSA_id:047168 AF255629 clone Ebpr19 prokMSA_id:025117 AF387307 actinobacterium clone SBRA22 prokMSA_id:024977 AF387308 actinobacterium clone SBRA282 prokMSA_id:051139 AF387311 actinobacterium clone SBRB1 prokMSA_id:050153 AF387312 actinobacterium clone GCP1 prokMSA_id:032048 AF387313 actinobacterium clone GCP18 prokMSA_id:037445 AF387314 actinobacterium clone GCP69 prokMSA_id:059354 AF502212 clone HP1A06 prokMSA_id:059353 AF502213 clone HP1B09 prokMSA_id:056542 AF513087 clone 14 prokMSA_id:062954 AF527598 clone LPU43 prokMSA_id:062567 AJ504573 isolate P2CN24 2.30.1.9.1.5.4.019 OTU 1 seq prokMSA_id:034447 AJ318104 clone BIai11 2.30.1.9.1.5.4.020 OTU 1 seq prokMSA_id:040007 AF109792 High G+C Gram-positive lpha5 2.30.1.9.1.5.4.021 OTU 1 seq prokMSA_id:040102 AF388884 firmicute clone GOBB3-CL124 2.30.1.9.1.5.4.022 OTU 1 seq prokMSA_id:040964 AF125092 Tetrasphaera japonica strain T1-X7 2.30.1.9.1.5.4.023 OTU 1 seq prokMSA_id:041096 AJ316319 strain LMG 20242 2.30.1.9.1.5.4.024 OTU 1 seq prokMSA_id:055750 AF513090 clone 16 2.30.1.9.1.5.4.025 OTU 2 seqs prokMSA_id:050307 AF423286 soil clone 672-2 prokMSA_id:049745 AJ277650 Ornithinimicrobium humiphilum strain DSM 12362 2.30.1.9.1.5.4.026 OTU 1 seq prokMSA_id:060784 AF491672 actinomycete clone SFD1-39 2.30.1.9.1.5.4.027 OTU 1 seq prokMSA_id:063005 AF526897 Terracoccus sp. 84-2c rrn 2.30.1.9.1.5.4.028 OTU 1 seq prokMSA_id:064598 AF467375 Terrabacter sp. clone 1530 2.30.1.9.1.5.4.029 OTU 1 seq prokMSA_id:064607 AF467357 Terrabacter sp. clone 1522 2.30.1.9.1.5.4.030 OTU 1 seq prokMSA_id:065429 AF513092 clone 21 2.30.1.9.1.5.4.032 OTU 27 seqs prokMSA_id:023747 AB004564 Terrabacter sp. prokMSA_id:042562 AB016438 Janibacter brevis strain:10N prokMSA_id:031576 AB016439 Janibacter brevis strain:16N prokMSA_id:055617 AB070457 Terrabacter sp. YK1 prokMSA_id:065242 AB070459 Terrabacter sp. YK3 prokMSA_id:065241 AB070460 Terrabacter sp. YK7 prokMSA_id:065237 AB070461 Terrabacter sp. YK8 prokMSA_id:065236 AB070462 Terrabacter sp. YK10 prokMSA_id:065235 AB070463 Terrabacter sp. YK11 prokMSA_id:065234 AB070464 Terrabacter sp. YK13 prokMSA_id:065233 AB070465 Terrabacter sp. YK14 prokMSA_id:065232 AB070466 Terrabacter sp. YK16 prokMSA_id:065231 AB070468 Terrabacter sp. YK21 prokMSA_id:075998 AB089480 Janibacter sp. YY-1 prokMSA_id:036954 AF176948 Janibacter terrae prokMSA_id:065431 AF513091 clone 17 prokMSA_id:061984 AJ244673 Janibacter like sp. V4.BE.21 prokMSA_id:061983 AJ244674 Janibacter like sp. V4.BO.43 marine isolate prokMSA_id:021333 AJ294412 Knoellia sinensis strain DSM 12331 prokMSA_id:049344 AJ294413 Knoellia subterranea strain HKI 0120 prokMSA_id:026312 AJ310085 Janibacter brevis strain DSM 13953T prokMSA_id:077483 AY167851 Knoellia sinensis strain SAFR-013 prokMSA_id:086704 AY278993 Terrabacter sp. 211002/XP prokMSA_id:012366 U96645 Terrabacter DDE-1 str. DDE-1. prokMSA_id:012365 Y08539 Janibacter limosus str. 2003-10 DSM 11140 . prokMSA_id:012370 Y08540 Janibacter thuringensis DSM 11141. prokMSA_id:012368 Y08853 Terrabacter sp. str. DPO 1361. 2.30.1.9.1.5.4.033 OTU 1 seq prokMSA_id:067250 AF495440 clone F13.46 2.30.1.9.1.5.4.034 OTU 1 seq prokMSA_id:070294 AJ277696 ARFS-29 2.30.1.9.1.5.4.035 OTU 1 seq prokMSA_id:070697 AY145531 Actinomycetales GP-3 2.30.1.9.1.5.4.036 OTU 1 seq prokMSA_id:076454 AY154506 earthworm intestine clone ew28 2.30.1.9.1.5.4.037 OTU 1 seq prokMSA_id:076746 AY154480 earthworm intestine clone wi06 2.30.1.9.1.5.4.038 OTU 1 seq prokMSA_id:076982 AY154600 earthworm cast clone c245 2.30.1.9.1.5.4.039 OTU 1 seq prokMSA_id:077117 AY154520 earthworm intestine clone ew56 2.30.1.9.1.5.4.040 OTU 1 seq prokMSA_id:078162 AB098588 Ornithinicoccus sp. TUT1020 2.30.1.9.1.5.4.041 OTU 1 seq prokMSA_id:081412 AY218557 clone KD1-21 2.30.1.9.1.5.4.042 OTU 1 seq prokMSA_id:086013 AY242627 soil clone Tc121-G05 2.30.1.9.1.5.4.043 OTU 1 seq prokMSA_id:086198 AB096085 Tonsillophilus suis strain:HT1-19 2.30.1.9.1.5.4.044 OTU 1 seq prokMSA_id:091892 AY345490 clone W4B-B08 2.30.1.9.1.5.4.999 poor quality 61 seqs prokMSA_id:035326 AB013414 High G+C gram-positive MB14 prokMSA_id:027434 AB013415 High G+C gram-positive MB15 prokMSA_id:074770 AB054826 Terrabacter sp. 1037 prokMSA_id:019278 AB054827 Terrabacter sp. 1185a prokMSA_id:047538 AB054914 Janibacter sp. 1165a prokMSA_id:037366 AB055425 Terrabacter sp. 1261 prokMSA_id:055298 AB070469 Terrabacter sp. YK4 prokMSA_id:065224 AB070470 Terrabacter sp. YK6 prokMSA_id:065223 AB070472 Terrabacter sp. YK17 prokMSA_id:068633 AB081822 seuence clone:B-05 prokMSA_id:083388 AB096084 Tonsillophilus suis strain:W254 prokMSA_id:045122 AF078428 Grassland soil clone sl3_621 prokMSA_id:022809 AF141411 actinomycete clone CR-FL30 prokMSA_id:069801 AF216510 actinomycete SkelCos5-20 prokMSA_id:035059 AF268859 glc16 prokMSA_id:057485 AF447794 firmicute clone S9 prokMSA_id:057480 AF447798 firmicute clone S22 prokMSA_id:088363 AF491904 Actinomycete symbiont 8 of Acromyrmex octospinosus prokMSA_id:065336 AF514791 clone Dpcom15 prokMSA_id:056301 AF515484 Terrabacter tumescens prokMSA_id:043321 AJ225335 Terrabacter tumescens-like species ; clone 30 prokMSA_id:044552 AJ225341 Terrabacter tumescens-like species ; clone 26 prokMSA_id:071113 AJ225342 Terrabacter tumescens-like species ; clone 57 prokMSA_id:037896 AJ225348 Terrabacter tumescens-like species ; clone 39 prokMSA_id:047446 AJ225351 Terrabacter tumescens-like species ; clone 43 prokMSA_id:026682 AJ225353 Terrabacter tumescens-like species ; clone 45 prokMSA_id:039762 AJ225355 Terrabacter tumescens-like species ; clone 48 prokMSA_id:025720 AJ225356 Terrabacter tumescens-like species ; clone 49 prokMSA_id:043262 AJ225360 Terrabacter tumescens-like species ; clone 58 prokMSA_id:016436 AJ225364 Terrabacter tumescens-like species ; clone 62 prokMSA_id:031909 AJ225370 Terrabacter tumescens-like species ; clone 12 prokMSA_id:029938 AJ225376 Terrabacter tumescens-like species ; clone 20 prokMSA_id:029200 AJ225377 Terrabacter tumescens-like species ; clone 1 prokMSA_id:029554 AJ225378 Terrabacter tumescens-like species ; clone 2 prokMSA_id:039157 AJ225379 Terrabacter tumescens-like species ; clone 24 prokMSA_id:070414 AJ244672 Dermatophilus like sp. V4.MS.34 prokMSA_id:073619 AJ404586 Janibacter JB1 prokMSA_id:056544 AJ504478 isolate P1CN07 prokMSA_id:062627 AJ504482 isolate P1CN11 prokMSA_id:055826 AJ504505 isolate P1CN38 prokMSA_id:062604 AJ504514 isolate P1CN53 prokMSA_id:062586 AJ504533 isolate P1CN75 prokMSA_id:056478 AJ504561 isolate P2CN12 prokMSA_id:062559 AJ504564 isolate P2CN15 prokMSA_id:062536 AJ504595 isolate P2CN54 prokMSA_id:062532 AJ504599 isolate P2CN58 prokMSA_id:031287 AY039449 Earthworm burrow B33M1 prokMSA_id:072129 AY143720 Terrabacter sp. clone P15 prokMSA_id:069703 AY143777 Teracoccus sp. clone Pr33 prokMSA_id:038909 D84597 Actinomycetes prokMSA_id:021974 D84599 Actinomycetes prokMSA_id:051783 D84600 Actinomycetes prokMSA_id:046033 D84612 Actinomycetes prokMSA_id:027803 D84618 Actinomycetes prokMSA_id:019698 D84622 Actinomycetes prokMSA_id:031389 D84624 Actinomycetes prokMSA_id:047257 D84628 Actinomycetes prokMSA_id:012363 D85486 Intrasporangium calvum str. No.7 KIP IFO 12989 . prokMSA_id:012373 X53215 Terrabacter tumescens NCIMB 8914 . prokMSA_id:012362 X84507 str. SBR1075. prokMSA_id:012367 Y15796 clone 37. 2.30.1.9.1.6 ARTHROBACTER_SUBGROUP 812 seqs 2.30.1.9.1.6.1 ARB.GLOBIFORMIS_SUBGROUP 293 seqs 2.30.1.9.1.6.1.002 OTU 2 seqs prokMSA_id:028143 AF180950 Renibacterium salmoninarum complete prokMSA_id:012425 X76977 Renibacterium salmoninarum str. K272/88 Icelandic isolate. 2.30.1.9.1.6.1.013 OTU 4 seqs prokMSA_id:086472 AY244783 Arthrobacter cumminsii prokMSA_id:012400 X93354 Arthrobacter sp. str. 445. prokMSA_id:012401 X93355 Arthrobacter sp. str. 483. prokMSA_id:012402 X93356 Arthrobacter sp. str. 537. 2.30.1.9.1.6.1.016 OTU 1 seq prokMSA_id:012398 AB024412 Arthrobacter SN16A str. SN16A. 2.30.1.9.1.6.1.017 OTU 1 seq prokMSA_id:012397 AF170748 Arthrobacter QSSC8-13 str. QSSC8-13. 2.30.1.9.1.6.1.018 OTU 1 seq prokMSA_id:012396 AJ009463 clone SJA-43. 2.30.1.9.1.6.1.026 OTU 1 seq prokMSA_id:020720 AF332384 Arthrobacter sp. B44 2.30.1.9.1.6.1.031 OTU 116 seqs prokMSA_id:049703 AB017539 Arthrobacter sp. H-I-2 prokMSA_id:044320 AB017541 Arthrobacter sp. R-II-1 prokMSA_id:043708 AB039736 Arthrobacter sp. CAB1 prokMSA_id:044124 AB070602 Arthrobacter sp. JCM 1339 prokMSA_id:059471 AB071950 Arthrobacter russicus prokMSA_id:077855 AB074600 actinobacterium clone:APe4_57 prokMSA_id:056186 AB079098 Arthrobacter sp. YTK36 prokMSA_id:094614 AB089841 Arthrobacter globiformis prokMSA_id:078280 AB098573 Arthrobacter globiformis prokMSA_id:012394 AF099202 Arthrobacter 'RSX II' str. RSX II. prokMSA_id:012393 AF102267 Arthrobacter chlorophenolicus str. A-6. prokMSA_id:038049 AF131353 Arthrobacter sp. IM-6025 prokMSA_id:012417 AF134179 Arthrobacter psychrolactophilus. prokMSA_id:012418 AF134180 Arthrobacter psychrolactophilus str. D10. prokMSA_id:012419 AF134181 Arthrobacter psychrolactophilus str. D2. prokMSA_id:012420 AF134182 Arthrobacter psychrolactophilus str. D5. prokMSA_id:012421 AF134183 Arthrobacter psychrolactophilus str. RG1. prokMSA_id:031820 AF150716 Elbe River snow isolate IsoC2 prokMSA_id:073750 AF197022 Arthrobacter sp. 'SMCC G950' prokMSA_id:016350 AF197025 Arthrobacter sp. 'SMCC G960' prokMSA_id:054157 AF197026 Arthrobacter sp. 'SMCC G961' prokMSA_id:051367 AF197028 Arthrobacter sp. 'SMCC G963' prokMSA_id:017243 AF197029 Arthrobacter sp. 'SMCC G964' prokMSA_id:037318 AF197031 Arthrobacter sp. 'SMCC G966' prokMSA_id:040653 AF197034 Arthrobacter sp. 'SMCC G970' prokMSA_id:039160 AF197036 Arthrobacter sp. 'SMCC G980' prokMSA_id:028569 AF197040 Arthrobacter sp. 'SMCC G991' prokMSA_id:049669 AF197041 Arthrobacter sp. 'SMCC G993' prokMSA_id:033777 AF197045 Arthrobacter sp. 'SMCC ZAT005' prokMSA_id:069351 AF197046 Arthrobacter sp. 'SMCC ZAT012' prokMSA_id:033476 AF197050 Arthrobacter sp. 'SMCC ZAT054' prokMSA_id:053229 AF197051 Arthrobacter sp. 'SMCC ZAT055' prokMSA_id:039179 AF197053 Arthrobacter sp. 'SMCC ZAT200' prokMSA_id:052833 AF197054 Arthrobacter sp. 'SMCC ZAT255' prokMSA_id:017928 AF197055 Arthrobacter sp. 'SMCC ZAT262' prokMSA_id:041138 AF214142 Arthrobacter sp. P18L1047 prokMSA_id:035909 AF214143 Arthrobacter sp. P2G285 prokMSA_id:027187 AF235091 Arthrobacter sulfonivorans prokMSA_id:023506 AF260708 Arthrobacter sp. S1 prokMSA_id:046937 AF330692 Arthrobacter sp. YH-2001 prokMSA_id:049314 AF388034 Arthrobacter sp. 53 prokMSA_id:019879 AF423236 soil clone 208-1 prokMSA_id:025283 AF423241 soil clone 239-1 prokMSA_id:037511 AF423261 soil clone 425-1 prokMSA_id:037813 AF423282 soil clone 623-1 prokMSA_id:039874 AF423301 soil clone 960-2 prokMSA_id:031087 AF423303 soil clone 987-1 prokMSA_id:088958 AF443564 clone O-CF-1 prokMSA_id:068761 AF479339 Glacial ice CanDirty7 prokMSA_id:068760 AF479340 Glacial ice Guliya200-A1 prokMSA_id:055711 AF487785 Arthrobacter sp. RZ-43 prokMSA_id:066782 AF500322 Arthrobacter sp. PF3 prokMSA_id:066276 AF506065 Arthrobacter sp. LCSAOTU6 prokMSA_id:012416 AJ243423 Arthrobacter CF-46 str. CF-46. prokMSA_id:042452 AJ252579 Agricultural soil isolate SI-12 prokMSA_id:078130 AJ271409 Arthrobacter sp. isolate Py21 prokMSA_id:016396 AJ278869 Arthrobacter roseus strain CMS92 prokMSA_id:040881 AJ278870 Arthrobacter roseus strain CMS90 prokMSA_id:048874 AJ298940 Micrococcus lylae strain d10 prokMSA_id:074109 AJ315071 Arthrobacter sp. 19503 prokMSA_id:074925 AJ519399 actinobacterium clone JG37-AG-83 prokMSA_id:075889 AJ532699 clone Gitt-KF-106 prokMSA_id:079237 AJ539170 clone AB07 prokMSA_id:093987 AJ551151 Arthrobacter sp. An12 isolate An12 prokMSA_id:094075 AJ551154 Arthrobacter sp. An16 isolate An16 prokMSA_id:093478 AJ551170 Arthrobacter sp. An32 isolate An32 prokMSA_id:093611 AJ551172 Arthrobacter sp. An34 isolate An34 prokMSA_id:084837 AJ557832 clone B3 prokMSA_id:090654 AJ576068 Arthrobacter pascens clone 3W prokMSA_id:093884 AJ582205 Actinobacterium clone Gitt-GS-137 prokMSA_id:094065 AJ582206 Actinobacterium clone Gitt-GS-68 prokMSA_id:019221 AY005127 Arthrobacter sp. RP17 prokMSA_id:056625 AY102314 clone a13107 prokMSA_id:064981 AY112986 Arthrobacter woluwensis prokMSA_id:060292 AY129789 Arthrobacter sp. clone GCPF14 prokMSA_id:059890 AY133106 actinobacterium clone ccspost2208 prokMSA_id:077488 AY167845 Arthrobacter chlorophenolicus strain SAFR-044 prokMSA_id:077502 AY167856 Arthrobacter globiformis strain SAFR-004 prokMSA_id:078941 AY176765 Arthrobacter sp. HJ4 prokMSA_id:078418 AY177350 Arthrobacter sp. I3 prokMSA_id:078801 AY177353 Arthrobacter sp. I4 prokMSA_id:078996 AY177360 Arthrobacter sp. M4 prokMSA_id:079779 AY191847 Arthrobacter sp. 12E prokMSA_id:092828 AY238501 Arthrobacter sp. 108 prokMSA_id:092730 AY238502 Arthrobacter sp. 110 prokMSA_id:090080 AY315168 Glacier FXS8 prokMSA_id:091700 AY327445 Arthrobacter sp. SB prokMSA_id:088471 AY336111 Arthrobacter woluwensis strain PSD-1 prokMSA_id:089291 AY336113 Arthrobacter woluwensis strain PSD-3 prokMSA_id:089560 AY336114 Arthrobacter woluwensis strain PSD-4 prokMSA_id:088203 AY336115 Arthrobacter woluwensis strain PSD-5 prokMSA_id:091802 AY336532 Arthrobacter sp. pfB3 prokMSA_id:091129 AY336539 Arthrobacter sp. pfB10 prokMSA_id:091088 AY345525 W10 prokMSA_id:093698 AY371215 Arthrobacter sp. AL24 prokMSA_id:093242 AY371223 Arthrobacter sp. AS18 prokMSA_id:093713 AY371243 Arthrobacter sp. BS20 prokMSA_id:093538 AY371259 Arthrobacter sp. CS17 prokMSA_id:093862 AY371260 Arthrobacter sp. CS18 prokMSA_id:098681 AY378184 Extreme arid zone HX-IE11 prokMSA_id:098219 AY378262 Permafrost DT-IIT23 prokMSA_id:096390 AY383043 Arthrobacter sp. DY12-2 prokMSA_id:012395 M23411 Arthrobacter globiformis str. 168 DSM 20124 . prokMSA_id:012424 U12221 str. B0620. prokMSA_id:012404 U31487 str. RS4. prokMSA_id:045425 U87110 Arthrobacter sp. 'SMCC B0518' prokMSA_id:048864 U87113 Arthrobacter sp. 'SMCC B0703' prokMSA_id:012427 X80736 Arthrobacter globiformis str. 168 DSM 20124 . prokMSA_id:012405 X80740 Arthrobacter pascens str. B89 DSM 20545 . prokMSA_id:012392 X80741 Arthrobacter polychromogenes str. 2568 DSM 20136 . prokMSA_id:012374 X80742 Arthrobacter ramosus str. I Gm 25 DSM 20546 . prokMSA_id:012407 X83408 Arthrobacter oxydans DSM 20119 . prokMSA_id:012415 X86595 Arthrobacter sp. str. AC-51. prokMSA_id:012399 X93353 Arthrobacter sp. str. 1551. prokMSA_id:012389 Y15884 Arthrobacter rhombi str. F58.3CB57. prokMSA_id:012403 Y15885 Arthrobacter rhombi str. F98.3HR69. 2.30.1.9.1.6.1.032 OTU 1 seq prokMSA_id:049877 AF441731 Arthrobacter sp. Kaza-36 2.30.1.9.1.6.1.033 OTU 1 seq prokMSA_id:072934 AJ344143 Citrococcus muralis strain 4-0 2.30.1.9.1.6.1.034 OTU 1 seq prokMSA_id:060285 AY129796 Arthrobacter sp. clone GCPF25 2.30.1.9.1.6.1.035 OTU 2 seqs prokMSA_id:072155 AF531475 Naphthalene-utilizing IS4 prokMSA_id:071392 AF531478 Naphthalene-utilizing IS13 2.30.1.9.1.6.1.036 OTU 2 seqs prokMSA_id:075585 AJ535636 Arthrobacter sp. SB28 strain SB28 prokMSA_id:076404 AJ535637 Arthrobacter sp. SB30 strain SB30 2.30.1.9.1.6.1.037 OTU 2 seqs prokMSA_id:078533 AJ428402 Varibaculum cambriensis strain CCUG 44998 prokMSA_id:080455 AJ491326 Varibaculum cambriensis strain CCUG 44998T 2.30.1.9.1.6.1.038 OTU 2 seqs prokMSA_id:081633 AY080984 Arthrobacter sp. clone ckl22 prokMSA_id:085092 AY228479 Yania halophila strain YIM 70085 2.30.1.9.1.6.1.039 OTU 1 seq prokMSA_id:087323 AY278872 Arthrobacter sp. CT5 2.30.1.9.1.6.1.040 OTU 1 seq prokMSA_id:091914 AY345444 KA72 2.30.1.9.1.6.1.041 OTU 1 seq prokMSA_id:094028 AY371218 Arthrobacter sp. AS13 2.30.1.9.1.6.1.042 OTU 1 seq prokMSA_id:095967 AY378221 Glacial ice ML-C10 2.30.1.9.1.6.1.043 OTU 1 seq prokMSA_id:098189 AY382898 Actinobacterium JC1078 2.30.1.9.1.6.1.999 poor quality 151 seqs prokMSA_id:026747 AB011771 high G+C gram-positive strain: G12010 prokMSA_id:027732 AB029419 43-45:1 prokMSA_id:063051 AB088763 Micrococcus luteus genes -23S ISR 23S and complete strain:JCM3348 prokMSA_id:063050 AB088764 Micrococcus luteus genes -23S ISR 23S and complete strain:JCM3347 prokMSA_id:092763 AB097838 Arthrobacter psychrolactophilus strain:F1 prokMSA_id:092468 AB097839 Arthrobacter psychrolactophilus strain:F2 prokMSA_id:092558 AB097840 Arthrobacter psychrolactophilus strain:F3 prokMSA_id:092734 AB097841 Arthrobacter psychrolactophilus strain:F4 prokMSA_id:092477 AB097842 Arthrobacter psychrolactophilus strain:F5 prokMSA_id:016499 AF010102 prokMSA_id:049331 AF078254 Grassland soil clone saf2_221 prokMSA_id:026291 AF078395 Grassland soil clone sl2_711 prokMSA_id:031609 AF078415 Grassland soil clone sl3_608 prokMSA_id:021606 AF078422 Grassland soil clone sl3_615 prokMSA_id:033675 AF128752 Soil ic129 prokMSA_id:039159 AF143747 actinomycete clone A2 prokMSA_id:041788 AF143763 actinomycete clone K2 prokMSA_id:031163 AF143765 actinomycete clone K5 prokMSA_id:074829 AF143770 actinomycete clone K6 prokMSA_id:043522 AF183151 Soil isolate KBS-EC3 prokMSA_id:038371 AF183153 Soil isolate KBS-EC5 prokMSA_id:030287 AF187315 JIII-wt-98 prokMSA_id:049518 AF197020 Arthrobacter sp. 'SMCC G915' prokMSA_id:016785 AF197023 Arthrobacter sp. 'SMCC G954' prokMSA_id:052598 AF197024 Arthrobacter sp. 'SMCC G959' prokMSA_id:028185 AF197027 Arthrobacter sp. 'SMCC G962' prokMSA_id:072427 AF197030 Arthrobacter sp. 'SMCC G965' prokMSA_id:035216 AF197032 Arthrobacter sp. 'SMCC G968' prokMSA_id:028359 AF197033 Arthrobacter sp. 'SMCC G969' prokMSA_id:033821 AF197035 Arthrobacter sp. 'SMCC G979' prokMSA_id:019719 AF197037 Arthrobacter sp. 'SMCC G982' prokMSA_id:017067 AF197038 Arthrobacter sp. 'SMCC G984' prokMSA_id:028043 AF197039 Arthrobacter sp. 'SMCC G986' prokMSA_id:018030 AF197042 Arthrobacter sp. 'SMCC ZAT001' prokMSA_id:048876 AF197043 Arthrobacter sp. 'SMCC ZAT002' prokMSA_id:050956 AF197044 Arthrobacter sp. 'SMCC ZAT004' prokMSA_id:025853 AF197047 Arthrobacter sp. 'SMCC ZAT013' prokMSA_id:019403 AF197048 Arthrobacter sp. 'SMCC ZAT014' prokMSA_id:052555 AF197052 Arthrobacter sp. 'SMCC ZAT056' prokMSA_id:049538 AF197056 Arthrobacter sp. 'SMCC ZAT263' prokMSA_id:019199 AF210795 Soil CAFB-JP4-1 prokMSA_id:074159 AF227843 str. 71381 prokMSA_id:047592 AF234055 #0319-2C8 prokMSA_id:027155 AF234077 #0319-6K1 prokMSA_id:018913 AF234083 #0319-6N24 prokMSA_id:031122 AF234088 #0319-7D16 prokMSA_id:032395 AF234093 #0319-7F7 prokMSA_id:028179 AF234095 #0319-7G2 prokMSA_id:022189 AF234110 #0319-8H5 prokMSA_id:027132 AF234112 #0319-8J20 prokMSA_id:041495 AF234113 #0319-8M8 prokMSA_id:038971 AF250405 Arthrobacter sp. 363 prokMSA_id:072066 AF321068 Arthrobacter globiformis strain U17 prokMSA_id:074535 AF335919 Arthrobacter sp. N6 prokMSA_id:030756 AF353696 Arthrobacter sp. PR-P3 prokMSA_id:028905 AF388334 clone Ac50 prokMSA_id:023117 AF406653 Bacillus megaterium strain A1 prokMSA_id:037934 AF406654 Arthrobacter oxydans strain A2 prokMSA_id:050788 AF423234 soil clone 167-2 prokMSA_id:028151 AF423266 soil clone 455-2 prokMSA_id:033817 AF429209 clone CR99-2-23 prokMSA_id:068383 AF487786 Arthrobacter sp. RZ-133 prokMSA_id:039337 AJ232832 clone LBS29 prokMSA_id:024258 AJ295349 Rape rhizosphere cse001 prokMSA_id:020983 AJ295369 Rape rhizosphere cse057 prokMSA_id:040901 AJ298933 Arthrobacter sp. d24 strain d24 prokMSA_id:016909 AJ344532 Arthrobacter sp. strain MBT7 prokMSA_id:043265 AJ404499 Micrococcus MC4 prokMSA_id:093471 AJ581948 Arthrobacter globiformis strain 2P3-25 prokMSA_id:023943 AY039445 Earthworm burrow B10D1 prokMSA_id:047315 AY039448 Earthworm burrow B1D1 prokMSA_id:031096 AY039452 Earthworm burrow B36M1 prokMSA_id:044283 AY039453 Earthworm burrow B37D1 prokMSA_id:024189 AY039474 Soil NS12 prokMSA_id:036203 AY039485 Soil S32M1 prokMSA_id:028916 AY039500 Soil S79D1 prokMSA_id:061651 AY043535 Arthrobacter sp. 4S2.H12 prokMSA_id:061649 AY043537 Arthrobacter sp. 4S2.H9 prokMSA_id:061648 AY043539 Arthrobacter sp. 4S2.G12 prokMSA_id:056426 AY043540 Arthrobacter sp. 4S2.A11 prokMSA_id:061645 AY043545 Forest soil 3S3.G2 prokMSA_id:020460 AY048904 L11-DesAhw2 prokMSA_id:066082 AY099233 clone MTU-8 prokMSA_id:056429 AY102342 clone a13157 prokMSA_id:062328 AY124384 actinobacterium clone ASa07 prokMSA_id:069551 AY143725 Arthrobacter sp. clone P47 prokMSA_id:069873 AY143726 Arthrobacter sp. clone P55 prokMSA_id:055406 AY143731 Arthrobacter sp. clone V11 prokMSA_id:075721 AY164337 clone ALIB-113 prokMSA_id:077286 AY170456 Arthrobacter sp. AQ19 prokMSA_id:083923 AY177727 Micrococcaceae HP7 prokMSA_id:078910 AY178857 Arthrobacter sp. B85 prokMSA_id:080059 AY191843 Arthrobacter sp. 11I prokMSA_id:079863 AY191844 Arthrobacter sp. 11J prokMSA_id:086666 AY220354 Arthrobacter sp. UVvi prokMSA_id:083484 AY275514 Arthrobacter sp. MSB2040 prokMSA_id:087153 AY278931 Arthrobacter sp. TB28 prokMSA_id:089863 AY307363 Arthrobacter sp. L62 prokMSA_id:093853 AY371204 Arthrobacter sp. AL13 prokMSA_id:093947 AY371207 Arthrobacter sp. AL16 prokMSA_id:093314 AY371210 Arthrobacter sp. AL19 prokMSA_id:093388 AY371214 Arthrobacter sp. AL23 prokMSA_id:093823 AY371219 Arthrobacter sp. AS14 prokMSA_id:093223 AY371229 Arthrobacter sp. BL15 prokMSA_id:094064 AY371234 Arthrobacter sp. BS11 prokMSA_id:094054 AY371235 Arthrobacter sp. BS12 prokMSA_id:094136 AY371239 Arthrobacter sp. BS16 prokMSA_id:094281 AY371240 Arthrobacter sp. BS17 prokMSA_id:093728 AY371242 Arthrobacter sp. BS19 prokMSA_id:093623 AY371244 Arthrobacter sp. BS21 prokMSA_id:094203 AY371247 Arthrobacter sp. CL12 prokMSA_id:093959 AY371251 Arthrobacter sp. CL16 prokMSA_id:096341 AY378181 Extreme arid zone HX-IE05 prokMSA_id:012423 D28793 str. H61. prokMSA_id:044938 D28799 Oligotrophic isolate S147 prokMSA_id:012376 D84561 Arthrobacter sp. str. S21003. prokMSA_id:012428 D84562 Arthrobacter sp. str. S21004. prokMSA_id:012377 D84563 Arthrobacter sp. str. S21011. prokMSA_id:012378 D84566 Arthrobacter sp. str. S21020. prokMSA_id:012379 D84567 Arthrobacter sp. str. S21022. prokMSA_id:012429 D84569 Arthrobacter sp. str. S21031. prokMSA_id:012380 D84571 Arthrobacter sp. str. S21102. prokMSA_id:012381 D84573 Arthrobacter sp. str. S21106. prokMSA_id:012382 D84575 Arthrobacter sp. str. S21114. prokMSA_id:012383 D84578 Arthrobacter sp. str. S21130. prokMSA_id:012384 D84579 Arthrobacter sp. str. S21135. prokMSA_id:012385 D84583 Arthrobacter sp. str. S22209. prokMSA_id:012409 D84585 Arthrobacter sp. str. S22215. prokMSA_id:012386 D84588 Arthrobacter sp. str. S22227. prokMSA_id:012410 D84591 Arthrobacter sp. str. S22232. prokMSA_id:012387 D84592 Arthrobacter sp. str. S22234. prokMSA_id:012430 D84594 Arthrobacter sp. str. S22236. prokMSA_id:012411 D84595 Arthrobacter sp. str. S22237. prokMSA_id:012388 D84596 Arthrobacter sp. str. S22242. prokMSA_id:012412 D84608 Arthrobacter sp. str. S23329. prokMSA_id:012375 L13136 unnamed organism. prokMSA_id:012390 U12219 str. B0603. prokMSA_id:012432 U12220 str. B0612. prokMSA_id:012391 U12224 str. B0672. prokMSA_id:012431 U12225 str. B0686. prokMSA_id:012422 U12228 str. B0723. prokMSA_id:012426 U31484 str. S7. prokMSA_id:012408 U85900 Arthrobacter sp. str. MB6-20. prokMSA_id:037032 U87109 Arthrobacter sp. 'SMCC B0422' prokMSA_id:044301 U87111 Arthrobacter sp. 'SMCC B0537' prokMSA_id:043532 U87112 Arthrobacter sp. 'SMCC B0543' prokMSA_id:022054 U87114 Arthrobacter sp. 'SMCC B0776' prokMSA_id:022443 U87115 Arthrobacter sp. 'SMCC B0755' prokMSA_id:012406 X51601 Renibacterium salmoninarum str. Les-1-74 ATCC 33209 . prokMSA_id:012413 X86593 Arthrobacter sp. str. AC-38. prokMSA_id:012414 X86594 Arthrobacter sp. str. AC-48. 2.30.1.9.1.6.2 ARB.AGILIS_SUBGROUP 174 seqs 2.30.1.9.1.6.2.004 OTU 1 seq prokMSA_id:012448 AB017354 Arthrobacter sp. str. RC100. 2.30.1.9.1.6.2.005 OTU 1 seq prokMSA_id:012447 AJ243421 Arthrobacter CF-43 str. CF-43. 2.30.1.9.1.6.2.015 OTU 1 seq prokMSA_id:012434 U85895 Arthrobacter sp. str. IC044. 2.30.1.9.1.6.2.017 OTU 24 seqs prokMSA_id:012437 AB002635 str. HTA275. prokMSA_id:012438 AB002636 str. HTA218. prokMSA_id:012436 AF041789 Arthrobacter S23H2 str. S23H2. prokMSA_id:012439 AF134184 Arthrobacter agilis str. LV7. prokMSA_id:019576 AF197049 Arthrobacter sp. 'SMCC ZAT031' prokMSA_id:018132 AF197057 Arthrobacter sp. 'SMCC ZAT277' prokMSA_id:071476 AF218242 Arthrobacter sp. prokMSA_id:022116 AF408268 Arthrobacter sp. clone KL-93-1-9 prokMSA_id:072673 AF479341 Glacial ice G200-C1 prokMSA_id:068747 AF479354 Glacial ice G50-TB7 prokMSA_id:065387 AF511518 Arthrobacter agilis prokMSA_id:061835 AF529327 actinobacterium clone CLi20 prokMSA_id:072942 AJ244667 Arthrobacter like sp. V4.BS.11 prokMSA_id:062006 AJ244668 Arthrobacter like sp. V4.BO.40 prokMSA_id:070897 AJ315069 Arthrobacter sp. 19501 prokMSA_id:085512 AJ440978 Antarctic R-7549 strain R-7549 prokMSA_id:089737 AJ577725 Arthrobacter agilis prokMSA_id:060440 AY131225 Arthrobacter sp. Fa21 prokMSA_id:085235 AY250864 Arthrobacter sp. prokMSA_id:098476 AY378196 Extreme arid zone HX-IIF63 prokMSA_id:097040 AY378244 Glacial ice MS-T10-08 prokMSA_id:096756 AY378256 Permafrost DT-IIK14 prokMSA_id:096087 AY378260 Permafrost DT-IIK30 prokMSA_id:012433 X80748 Arthrobacter agilis str. W.O. 219 DSM 20550 . 2.30.1.9.1.6.2.018 OTU 1 seq prokMSA_id:017468 AJ315070 Arthrobacter sp. 19502 2.30.1.9.1.6.2.020 OTU 43 seqs prokMSA_id:012446 AB017649 Arthrobacter sp. str. 19B. prokMSA_id:012453 AB017650 Arthrobacter sp. str. 19C. prokMSA_id:062947 AB079095 Arthrobacter sp. YTK13 prokMSA_id:062945 AB079097 Arthrobacter histidinolovorans prokMSA_id:019838 AF235090 Arthrobacter methylotrophus prokMSA_id:041769 AF256196 Arthrobacter keyseri 12B prokMSA_id:042596 AF467106 Arthrobacter aurescens strain TA13 prokMSA_id:066786 AF500318 Arthrobacter sp. PC12 prokMSA_id:065524 AF501335 Arthrobacter aurescens strain HAMBI2373 prokMSA_id:065510 AF501356 Arthrobacter histidinolovorans strain HAMBI2381 prokMSA_id:065507 AF501358 Arthrobacter histidinolovorans strain HAMBI2372 prokMSA_id:065508 AF501359 Arthrobacter histidinolovorans strain HAMBI2379 prokMSA_id:065506 AF501360 Arthrobacter histidinolovorans strain HAMBI2383 prokMSA_id:065499 AF501369 Arthrobacter aurescens strain HAMBI2377 prokMSA_id:060994 AF531476 Naphthalene-utilizing IS5 prokMSA_id:077476 AF543695 Arthrobacter sp. AD1 prokMSA_id:012442 AJ243422 Arthrobacter CF-25 str. CF-25. prokMSA_id:077583 AJ316140 Arthrobacter gandensis strain R5812T prokMSA_id:064361 AJ491107 Arthrobacter gandensis strain R5814 prokMSA_id:064360 AJ491108 Arthrobacter gandensis strain R5815 prokMSA_id:075566 AJ512504 Arthrobacter nitroguaiacolicus strain DSM 4924 prokMSA_id:079429 AJ539172 clone AF501 prokMSA_id:044226 AY053487 AT425_EubD11 prokMSA_id:063458 AY116496 Arthrobacter koreensis strain CA15-8 prokMSA_id:063457 AY116497 Arthrobacter koreensis strain CA15-9 prokMSA_id:089908 AY247743 Arthrobacter sp. IBN110 prokMSA_id:091022 AY336531 Arthrobacter sp. pfB2 prokMSA_id:092005 AY345527 W8 prokMSA_id:093461 AY371221 Arthrobacter sp. AS16 prokMSA_id:094011 AY371224 Arthrobacter sp. AS19 prokMSA_id:093888 AY371252 Arthrobacter sp. CL17 prokMSA_id:093786 AY371258 Arthrobacter sp. CS16 prokMSA_id:095948 AY378267 Permafrost DT-IV06 prokMSA_id:012445 U85897 Arthrobacter sp. str. MB6-07. prokMSA_id:012441 U96186 Rathayibacter rathayi ATCC 13659. prokMSA_id:012440 X80737 Arthrobacter citreus str. C7 DSM 20133 . prokMSA_id:012444 X80743 Arthrobacter nicotinovorans DSM 420 . prokMSA_id:012443 X80744 Arthrobacter ureafaciens str. NC DSM 20126 . prokMSA_id:012452 X83405 Arthrobacter aurescens DSM 20116 . prokMSA_id:012449 X83406 Arthrobacter histidinolovorans DSM 20115 . prokMSA_id:012451 X83407 Arthrobacter ilicis DSM 20138 . prokMSA_id:018301 Y13325 Arthrobacter ilicis prokMSA_id:033100 Y13326 Arthrobacter sp. 825 bp 2.30.1.9.1.6.2.021 OTU 1 seq prokMSA_id:019887 AJ242532 Arthrobacter haridrum isolate CMS-19Y 2.30.1.9.1.6.2.022 OTU 1 seq prokMSA_id:068681 AJ292364 Arthrobacter nasiphocae strain M597/99/10 2.30.1.9.1.6.2.023 OTU 1 seq prokMSA_id:068776 AF479325 Glacial ice CanDirty1 2.30.1.9.1.6.2.024 OTU 1 seq prokMSA_id:072484 AJ298578 Hb7-K5 2.30.1.9.1.6.2.025 OTU 1 seq prokMSA_id:077874 AB089072 Actinobacteridae clone:Rs-N91 2.30.1.9.1.6.2.026 OTU 1 seq prokMSA_id:078448 AY179187 Arthrobacter keyseri clone ALK-8 2.30.1.9.1.6.2.027 OTU 1 seq prokMSA_id:082623 AY217496 Actinobacterium WCIR2 2.30.1.9.1.6.2.028 OTU 1 seq prokMSA_id:089790 AJ577108 Arthrobacter sp. clone 20 2.30.1.9.1.6.2.029 OTU 1 seq prokMSA_id:090394 AJ577111 Arthrobacter sp. clone 80 2.30.1.9.1.6.2.030 OTU 1 seq prokMSA_id:091640 AY337600 Actinobacterium EC5 2.30.1.9.1.6.2.999 poor quality 93 seqs prokMSA_id:031075 AB011763 high G+C gram-positive strain: G11008 prokMSA_id:026568 AB011764 high G+C gram-positive strain: G11009 prokMSA_id:036319 AB011765 high G+C gram-positive strain: G11020 prokMSA_id:036911 AB011766 high G+C gram-positive strain: G12022 prokMSA_id:052152 AB011767 high G+C gram-positive strain: G12043 prokMSA_id:041834 AB011768 high G+C gram-positive strain: G12001 prokMSA_id:037924 AB011769 high G+C gram-positive strain: G12002 prokMSA_id:044049 AB011770 high G+C gram-positive strain: G12006 prokMSA_id:049815 AB011772 high G+C gram-positive strain: G12015 prokMSA_id:026764 AB011773 high G+C gram-positive strain: G12003 prokMSA_id:036453 AB011774 high G+C gram-positive strain: G12017 prokMSA_id:016494 AB011775 high G+C gram-positive strain: G12018 prokMSA_id:022327 AB011776 high G+C gram-positive strain: G12019 prokMSA_id:049545 AB011777 high G+C gram-positive strain: G22004 prokMSA_id:046934 AB011778 high G+C gram-positive strain: G22001 prokMSA_id:049649 AB011779 high G+C gram-positive strain: G22005 prokMSA_id:041262 AB011780 high G+C gram-positive strain: G22014 prokMSA_id:037159 AB011781 high G+C gram-positive strain: G22029 prokMSA_id:030049 AB054918 Arthrobacter sp. 1034 prokMSA_id:075484 AB075109 clone:KSRS10 prokMSA_id:075066 AB075113 clone:KSRS17 prokMSA_id:084289 AB107170 Actinobacterium W-2005 parital prokMSA_id:084624 AB107176 Actinobacterium W-2012 parital prokMSA_id:082833 AB107177 Actinobacterium W-2013 parital prokMSA_id:086694 AB107178 Actinobacterium W-2014 parital prokMSA_id:082572 AB107184 Actinobacterium W-2020 parital prokMSA_id:085271 AB107187 Actinobacterium W-2023b parital prokMSA_id:085405 AB107196 Actinobacterium W-2048a parital prokMSA_id:022215 AF128665 soil C0163 prokMSA_id:043274 AF128745 Soil ic024 prokMSA_id:023657 AF182014 Arthrobacter sp. KAT17 prokMSA_id:017655 AF197021 Arthrobacter sp. 'SMCC G919' prokMSA_id:025467 AF205372 Arthrobacter sp. QSSC1-6 prokMSA_id:032188 AF231413 Humic substances-degrading HS143 prokMSA_id:041461 AF240138 Grassland soil TSA-12 prokMSA_id:034933 AF250408 Arthrobacter sp. D20 prokMSA_id:047010 AF250421 Arthrobacter sp. D61 prokMSA_id:046911 AF440440 Arthrobacter agilis strain W2.2 prokMSA_id:055438 AF481836 Arthrobacter sp. TRP6:2-2 prokMSA_id:076681 AF538346 clone ENV-MO-014 Fig. 6 DGGE gel band g prokMSA_id:051337 AJ251072 Arthrobacter agilis strain 6A20Z prokMSA_id:017392 AJ400555 clone Hb6-K17 prokMSA_id:020806 AJ421810 clone CFB-6MS-1 prokMSA_id:076515 AJ517834 Arthrobacter sp. E53 strain E53 prokMSA_id:089110 AJ577109 Arthrobacter sp. clone 41 prokMSA_id:089672 AJ577110 Arthrobacter sp. clone 45 prokMSA_id:088262 AJ577112 Arthrobacter sp. clone 127 prokMSA_id:068813 AY039446 Earthworm burrow B11D1 prokMSA_id:044757 AY039454 Earthworm burrow B37M1 prokMSA_id:044214 AY039824 Arthrobacter nicotinovorans strain jshs4 prokMSA_id:073555 AY044092 Arthrobacter sp. 20 prokMSA_id:063054 AY122289 Denitrifying AC1 prokMSA_id:083811 AY217495 actinobacterium prokMSA_id:091203 AY266428 Marine SIMO-1582 prokMSA_id:094250 AY371202 Arthrobacter sp. AL11 prokMSA_id:093501 AY371203 Arthrobacter sp. AL12 prokMSA_id:093901 AY371205 Arthrobacter sp. AL14 prokMSA_id:093753 AY371206 Arthrobacter sp. AL15 prokMSA_id:094191 AY371208 Arthrobacter sp. AL17 prokMSA_id:093486 AY371209 Arthrobacter sp. AL18 prokMSA_id:094178 AY371211 Arthrobacter sp. AL20 prokMSA_id:093770 AY371212 Arthrobacter sp. AL21 prokMSA_id:093869 AY371213 Arthrobacter sp. AL22 prokMSA_id:094209 AY371216 Arthrobacter sp. AS11 prokMSA_id:093264 AY371217 Arthrobacter sp. AS12 prokMSA_id:094111 AY371220 Arthrobacter sp. AS15 prokMSA_id:094009 AY371222 Arthrobacter sp. AS17 prokMSA_id:094167 AY371225 Arthrobacter sp. BL11 prokMSA_id:093187 AY371226 Arthrobacter sp. BL12 prokMSA_id:093995 AY371227 Arthrobacter sp. BL13 prokMSA_id:093866 AY371228 Arthrobacter sp. BL14 prokMSA_id:093545 AY371230 Arthrobacter sp. BL16 prokMSA_id:094132 AY371231 Arthrobacter sp. BL17 prokMSA_id:093945 AY371232 Arthrobacter sp. BL18 prokMSA_id:093983 AY371236 Arthrobacter sp. BS13 prokMSA_id:093714 AY371237 Arthrobacter sp. BS14 prokMSA_id:094254 AY371238 Arthrobacter sp. BS15 prokMSA_id:093831 AY371241 Arthrobacter sp. BS18 prokMSA_id:093732 AY371245 Arthrobacter sp. BS22 prokMSA_id:093928 AY371246 Arthrobacter sp. CL11 prokMSA_id:094085 AY371248 Arthrobacter sp. CL13 prokMSA_id:094218 AY371249 Arthrobacter sp. CL14 prokMSA_id:093941 AY371250 Arthrobacter sp. CL15 prokMSA_id:093607 AY371253 Arthrobacter sp. CS11 prokMSA_id:093787 AY371254 Arthrobacter sp. CS12 prokMSA_id:093342 AY371255 Arthrobacter sp. CS13 prokMSA_id:093766 AY371256 Arthrobacter sp. CS14 prokMSA_id:093316 AY371257 Arthrobacter sp. CS15 prokMSA_id:094045 AY371261 Arthrobacter sp. CS19 prokMSA_id:012450 NONE Rhizobium sp. str. 3466.Rhizobium isolate. prokMSA_id:039950 U31477 actinomycete RS1W rrs prokMSA_id:049316 U78939 Marine R2A54 prokMSA_id:012435 U85896 Arthrobacter sp. str. MB8-13. 2.30.1.9.1.6.3 ARB.SULFUREUS_SUBGROUP 138 seqs 2.30.1.9.1.6.3.002 OTU 1 seq prokMSA_id:012482 AF170745 Micrococcus QSSC8-1 str. QSSC8-1. 2.30.1.9.1.6.3.003 OTU 1 seq prokMSA_id:012481 AF068463 Treponema Treponema clone RFS10. 2.30.1.9.1.6.3.004 OTU 1 seq prokMSA_id:012479 D88211 Arthrobacter creatinolyticus str. GIFU 12498 GIFU 12498 . 2.30.1.9.1.6.3.009 OTU 40 seqs prokMSA_id:012467 AB023371 Micrococcus luteus IFO 16250. prokMSA_id:034415 AB074737 Actinobacterium S-Nnd-5-1 prokMSA_id:012466 AF057289 Micrococcus luteus str. HN2-11. prokMSA_id:012483 AF057290 Micrococcus lylae str. W1IMSNU 50712. prokMSA_id:012464 AF105024 Micrococcus DD75 str. DD75. prokMSA_id:022419 AF218240 Micrococcus sp. prokMSA_id:034226 AF234843 Micrococcus luteus strain FO-003 prokMSA_id:038976 AF234861 Micrococcus luteus strain FO-084a prokMSA_id:021230 AF262752 Endocytic Noc3 prokMSA_id:042345 AF336358 Micrococcus sp. Wuba57 prokMSA_id:025226 AF343930 Microccous sp. NBF9 prokMSA_id:072015 AF394169 Blackwater bioreactor BW4 prokMSA_id:068736 AF479368 Glacial ice SB19K-1 prokMSA_id:065501 AF501366 Micrococcus luteus strain HAMBI2408 prokMSA_id:075881 AF542073 Micrococcus luteus prokMSA_id:049962 AJ005932 Micrococcus psychrophilum mRNA prokMSA_id:061982 AJ244663 Micrococcus sp. V4.MO.30 prokMSA_id:072344 AJ244664 Micrococcus sp. V4.BP.16 prokMSA_id:030108 AJ250438 Micrococcus luteus strain 2.13 prokMSA_id:072261 AJ276811 Micrococcus sp. strain LMG-19421 prokMSA_id:042695 AJ295375 Rape rhizosphere cse077 prokMSA_id:042163 AJ296288 Micrococcus sp. 667-16 prokMSA_id:029883 AJ313024 Micrococcus sp. MN 8.1d.1c isolate MN 8.1d.1c prokMSA_id:023916 AJ409096 Micrococcus luteus strain Ballarat prokMSA_id:083602 AJ441006 Antarctic R-9183 strain R-9183 prokMSA_id:063995 AJ491837 Micrococcus luteus strain B34 prokMSA_id:078140 AJ536198 Micrococcus luteus strain DSM 20030T prokMSA_id:038653 AY039499 Soil S78D1 prokMSA_id:069600 AY144446 Micrococcus luteus prokMSA_id:078396 AY159885 Micrococcus sp. 98TH11318 prokMSA_id:078221 AY159886 Micrococcus sp. 98TH11319 prokMSA_id:078312 AY159888 Micrococcus sp. 98TH11321 prokMSA_id:077783 AY159889 Micrococcus sp. 98TH11322 prokMSA_id:077387 AY167858 Micrococcus luteus strain SAFR-002 prokMSA_id:084540 AY241413 Micrococcus sp. UST010620-003 prokMSA_id:095587 AY378257 Permafrost DT-IIK15 prokMSA_id:012480 X80750 Micrococcus lylae str. JL 178 DSM 20315 . prokMSA_id:012468 X86608 Micrococcus sp. str. 1F-15. prokMSA_id:012469 X86609 Micrococcus sp. str. AC-47. prokMSA_id:012465 Y15857 unnamed organism. 2.30.1.9.1.6.3.011 OTU 12 seqs prokMSA_id:078055 AB098571 Arthrobacter sp. TUT1003 prokMSA_id:077664 AB098572 Arthrobacter sp. TUT1004 prokMSA_id:054177 AF200218 Psychrophilic marine PS32 complete and -23S intergenic spacer region prokMSA_id:065389 AF511517 Arthrobacter nicotianae prokMSA_id:017863 AJ251417 Brevibacterium liquefaciens strain DSM 20579 prokMSA_id:045136 AJ315492 Arthrobacter nicotianae strain SB42 prokMSA_id:093546 AJ551144 Arthrobacter sp. An4 isolate An4 prokMSA_id:093370 AJ551163 Arthrobacter sp. An25 isolate An25 prokMSA_id:093655 AJ551167 Arthrobacter sp. An29 isolate An29 prokMSA_id:012474 X80739 Arthrobacter nicotianae str. 94 DSM 20123 . prokMSA_id:012456 X80745 Arthrobacter protophormiae str. M-570 DSM 20168 . prokMSA_id:012462 X83410 Arthrobacter uratoxydans DSM 20647 . 2.30.1.9.1.6.3.012 OTU 1 seq prokMSA_id:012457 U85893 Arthrobacter sp. str. MB90. 2.30.1.9.1.6.3.013 OTU 9 seqs prokMSA_id:071728 AB046358 Arthrobacter sulfureus prokMSA_id:025056 AF336357 Arthrobacter sp. Wuba49 prokMSA_id:074823 AJ289962 isolate AH13 prokMSA_id:063471 AJ495808 Arthrobacter sp. p20G prokMSA_id:093638 AJ551149 Arthrobacter sp. An10 isolate An10 prokMSA_id:093690 AJ551164 Arthrobacter sp. An26 isolate An26 prokMSA_id:098047 AY378180 Extreme arid zone HX-IE03 prokMSA_id:098137 AY392127 Arthrobacter sulfureus strain BW1010 prokMSA_id:012454 X83409 Arthrobacter sulfureus DSM 20167 . 2.30.1.9.1.6.3.014 OTU 1 seq prokMSA_id:041786 AF132859 Arthrobacter sp. FeS9Lb 2.30.1.9.1.6.3.015 OTU 1 seq prokMSA_id:042157 AF194538 Methylomicrobium sp. 6G 2.30.1.9.1.6.3.016 OTU 7 seqs prokMSA_id:079015 AB094464 Citricoccus sp. 2216.25.22 prokMSA_id:061986 AJ244665 Micrococcus sp. V4.MO.20 prokMSA_id:061979 AJ244666 Micrococcus sp. V4.MO.09 prokMSA_id:044949 AJ307945 mRNA clone sipK5 prokMSA_id:084784 AY177730 Micrococcaceae HP42 prokMSA_id:080644 AY188937 Micrococcus sp. P_wp0222 prokMSA_id:094681 AY376164 Citricoccus halotolerans strain YIM 70010 2.30.1.9.1.6.3.017 OTU 1 seq prokMSA_id:066789 AF500313 Arthrobacter sp. PB8 2.30.1.9.1.6.3.018 OTU 1 seq prokMSA_id:071816 AF513395 Arthrobacter sp. 34-1 2.30.1.9.1.6.3.019 OTU 1 seq prokMSA_id:074845 AF513394 Arthrobacter sp. 17-2 2.30.1.9.1.6.3.020 OTU 1 seq prokMSA_id:077625 AB089081 Actinobacteridae clone:Rs-N96 2.30.1.9.1.6.3.021 OTU 1 seq prokMSA_id:077938 AB089073 Actinobacteridae clone:Rs-K96 2.30.1.9.1.6.3.022 OTU 1 seq prokMSA_id:077943 AB089080 Actinobacteridae clone:Rs-M66 2.30.1.9.1.6.3.023 OTU 1 seq prokMSA_id:078363 AJ271410 Arthrobacter sp. isolate Py22 2.30.1.9.1.6.3.024 OTU 1 seq prokMSA_id:092449 AY327446 Arthrobacter sp. 42-1 2.30.1.9.1.6.3.025 OTU 1 seq prokMSA_id:093394 AJ551162 Arthrobacter sp. An24 isolate An24 2.30.1.9.1.6.3.999 poor quality 55 seqs prokMSA_id:051133 AB054909 Arthrobacter sp. 1264c prokMSA_id:043176 AB054915 Micrococcus sp. 1182 prokMSA_id:019008 AF058372 Micrococcus clone MT2 prokMSA_id:045573 AF078255 Grassland soil clone saf2_222 prokMSA_id:073684 AF148972 Aquatic STS_R2A_38 prokMSA_id:046215 AF175581 WJGRT-3 prokMSA_id:046093 AF300983 Skdkislt3 prokMSA_id:066712 AF325149 Micrococcus sp. F16 prokMSA_id:064601 AF467371 actinomycete clone 1532 prokMSA_id:066137 AF510043 MF32 prokMSA_id:025436 AJ251071 Micrococcus luteus strain 5A39Z prokMSA_id:053876 AJ295383 Rape rhizosphere M9001 prokMSA_id:045863 AJ295384 Rape rhizosphere M9003 prokMSA_id:034430 AJ298937 Micrococcus luteus strain d2 prokMSA_id:028756 AJ309917 Micrococcus luteus strain dtb113 prokMSA_id:074259 AJ312751 Micrococcus luteus strain 118 prokMSA_id:029939 AJ344529 Micrococcus luteus strain OFLB2 prokMSA_id:037167 AJ344530 Micrococcus luteus strain OFLB8 prokMSA_id:048718 AJ404500 Micrococcus MC1 prokMSA_id:072575 AJ421103 clone C10-K22 prokMSA_id:064701 AJ489375 Micrococcus sp. Lgg20.4 strain Lgg20.4 prokMSA_id:063151 AJ496321 Micrococcus luteus strain ZS50B prokMSA_id:057541 AJ516037 Micrococcus sp. L3/36 strain L3/36 prokMSA_id:057540 AJ516038 Micrococcus luteus strain L1/54 prokMSA_id:057538 AJ516039 Micrococcus sp. LE/29 strain LE/29 prokMSA_id:056647 AJ516052 Micrococcus luteus strain L2/33 prokMSA_id:027834 AY039479 Soil NS8 prokMSA_id:022827 AY039503 Soil S86D3 prokMSA_id:075019 AY158033 Arthrobacter sulfureus strain CSQ5 prokMSA_id:080449 AY190162 Georgenia sp. R2 prokMSA_id:084771 AY241455 Micrococcus sp. UST020129-027 prokMSA_id:085164 AY275508 Actinobacterium MSB2110 isolate MSB2110 prokMSA_id:083799 AY275509 Plantibacter flavus isolate MSB2139 prokMSA_id:085970 AY275512 Micrococcus sp. MSB2038 prokMSA_id:084564 AY275513 Micrococcus sp. MSB3029 prokMSA_id:094834 AY321533 Marine 13707 prokMSA_id:094293 AY321534 Marine 13720 prokMSA_id:092275 AY357893 Micrococcus sp. NRL-CB8 prokMSA_id:093649 AY364022 Actinobacterium iEII8 prokMSA_id:012455 L13137 str. B686. prokMSA_id:012478 L13145 str. B755. prokMSA_id:012463 M38242 Micrococcus luteus str. Hucker S66 ATCC 381. prokMSA_id:012477 U27844 clone pCON14. prokMSA_id:012460 U27845 clone pCON17. prokMSA_id:012484 U27860 clone pX1. prokMSA_id:012459 U31483 str. S25. prokMSA_id:012475 U31496 str. S23. prokMSA_id:012461 U31499 str. S36. prokMSA_id:074184 U85894 Arthrobacter sp. IC048 prokMSA_id:012470 X86610 Micrococcus sp. str. AG-03. prokMSA_id:012471 X86611 Micrococcus sp. str. S2-03. prokMSA_id:012472 X86612 Micrococcus sp. str. S2-07. prokMSA_id:012473 X86613 Micrococcus sp. str. S2-08. prokMSA_id:012476 Z11494 Arthrobacter sp. str. H1. prokMSA_id:012458 Z48283 Arthrobacter sp. str. S2. 2.30.1.9.1.6.4 NK.HALOBIA_SUBGROUP 18 seqs 2.30.1.9.1.6.4.001 OTU 1 seq prokMSA_id:012490 X80746 Arthrobacter atrocyaneus DSM 20127 . 2.30.1.9.1.6.4.002 OTU 1 seq prokMSA_id:012488 AJ241006 clone Sva0506. 2.30.1.9.1.6.4.003 OTU 1 seq prokMSA_id:012486 AF140001 str. ML-162. 2.30.1.9.1.6.4.004 OTU 1 seq prokMSA_id:012485 X80747 Nesterenkonia halobia str. 28-3 DSM 20541 . 2.30.1.9.1.6.4.005 OTU 1 seq prokMSA_id:059474 AJ290397 Nesterenkonia sp. EL-30 strain EL-30 2.30.1.9.1.6.4.006 OTU 2 seqs prokMSA_id:044941 X92154 sp. Lake Elmenteita isolate WE2 prokMSA_id:023405 X92155 sp. Crater Lake isolate 13C1 2.30.1.9.1.6.4.007 OTU 2 seqs prokMSA_id:080189 AF468444 Arctic sea ice ARK9983 prokMSA_id:084282 AY226508 Nesterenkonia sp. YIM 70084 2.30.1.9.1.6.4.008 OTU 1 seq prokMSA_id:083543 AY226510 Nesterenkonia sp. YIM 70097 2.30.1.9.1.6.4.009 OTU 1 seq prokMSA_id:091950 AY345484 K28 2.30.1.9.1.6.4.999 poor quality 7 seqs prokMSA_id:074689 AB054893 Arthrobacter sp. 1736 prokMSA_id:043856 AF335264 Nesterenkonia halobia LS-12C prokMSA_id:068054 AF365694 clone BT60DS1BC3 prokMSA_id:079815 AY193033 actinobacterium clone BMSA8 prokMSA_id:012489 U12223 str. B0629. prokMSA_id:018207 U87116 Arthrobacter sp. 'SMCC B0626' prokMSA_id:012487 Y13857 Nesterenkonia halobia str. Rh-59. 2.30.1.9.1.6.5 ARB.CRYSTALLOPOIETES_SUBGROUP 23 seqs 2.30.1.9.1.6.5.001 OTU 1 seq prokMSA_id:012492 AF013544 unnamed organism. 2.30.1.9.1.6.5.002 OTU 3 seqs prokMSA_id:048838 AF329834 Arthrobacter crystallopoietes prokMSA_id:072222 AJ316305 Arthrobacter sp. LMG 20239 strain LMG 20239 prokMSA_id:012491 X80738 Arthrobacter crystallopoietes DSM 20117 . 2.30.1.9.1.6.5.003 OTU 2 seqs prokMSA_id:062008 AJ244669 Arthrobacter like sp. V4.BE.52 prokMSA_id:062004 AJ244670 Arthrobacter like sp. V4.BE.47 2.30.1.9.1.6.5.999 poor quality 17 seqs prokMSA_id:074817 AF234060 #0319-2F1 prokMSA_id:080420 AF448183 actinobacterium clone ML110J-30 prokMSA_id:080734 AF448185 actinobacterium clone ML110J-6 prokMSA_id:079832 AF448186 actinobacterium clone ML316M-12 prokMSA_id:080351 AF448189 actinobacterium clone ML516J-2 prokMSA_id:080858 AF448191 actinobacterium clone ML615J-11 prokMSA_id:079986 AF448194 actinobacterium clone ML812M-10 prokMSA_id:080354 AF448195 actinobacterium clone ML812M-12 prokMSA_id:080919 AF448196 actinobacterium clone ML812M-9 prokMSA_id:080670 AF448197 actinobacterium clone ML817J-11 prokMSA_id:024684 AJ297615 clone C44K10 prokMSA_id:031361 AJ309967 Actinobacterium dtb63 strain dtb63 prokMSA_id:033411 AJ400568 clone G4-K26 prokMSA_id:072396 AJ421208 clone C4-K9 prokMSA_id:012493 U43646 clone EH-4. prokMSA_id:012494 U43647 clone EH-13. prokMSA_id:036883 U85892 Micrococcus sp. MB6-12 2.30.1.9.1.6.6 STT.MUCILAGINOSUS_SUBGROUP 23 seqs 2.30.1.9.1.6.6.001 OTU 4 seqs prokMSA_id:035167 AF202003 Human oral C70 prokMSA_id:095135 AJ583197 Actinobacterium clone S15D-MN233 prokMSA_id:012497 X87758 Stomatococcus mucilaginosus DSM 20746 . prokMSA_id:012498 X95483 Stomatococcus mucilaginosus str. strain DSM . 2.30.1.9.1.6.6.002 OTU 6 seqs prokMSA_id:059468 AB071952 Rothia aerius prokMSA_id:050851 AF332382 Arthrobacter sp. B10 prokMSA_id:058301 AF543279 Rothia sp. ChDC B201 prokMSA_id:058299 AF543280 Rothia sp. ChDC B202 prokMSA_id:033563 AJ131122 Rothia sp. CCUG 25688 prokMSA_id:012496 Y13025 Actinomyces sp. str. CCUG 25688. 2.30.1.9.1.6.6.003 OTU 5 seqs prokMSA_id:058305 AF543276 Rothia dentocariosa strain ChDC B198 prokMSA_id:058302 AF543277 Rothia dentocariosa strain ChDC B199 prokMSA_id:058300 AF543278 Rothia dentocariosa strain ChDC B200 prokMSA_id:058293 AF543284 Rothia dentocariosa strain ChDC OS32 prokMSA_id:012495 M59055 Rothia dentocariosa ATCC 17931 . 2.30.1.9.1.6.6.004 OTU 1 seq prokMSA_id:074187 AF364948 clone clL38b 2.30.1.9.1.6.6.999 poor quality 7 seqs prokMSA_id:047204 AB028338 oral SH17 prokMSA_id:025177 AB073624 Rothia dentocariosa strain:SMUM3682 prokMSA_id:016580 AJ404531 Micrococcus MC6 prokMSA_id:095663 AJ555132 Rothia mucilaginosa prokMSA_id:087705 AY269876 Rothia sp. 13 prokMSA_id:082816 AY275518 Actinobacterium MSB3008 isolate MSB3008 prokMSA_id:034032 Y12925 R.dentocariosa 2.30.1.9.1.6.7 KOCURIA_SUBGROUP 63 seqs 2.30.1.9.1.6.7.001 OTU 1 seq prokMSA_id:012510 AB008899 clone Cd45. 2.30.1.9.1.6.7.002 OTU 1 seq prokMSA_id:012509 AB008898 clone Cd10. 2.30.1.9.1.6.7.003 OTU 5 seqs prokMSA_id:043126 AF323746 Kocuria kristinae prokMSA_id:065497 AF501368 Kocuria kristinae strain HAMBI2407 prokMSA_id:027944 AJ316579 Kocuria kristinae prokMSA_id:089571 AY327845 Streptomyces sp. MSU 2110 prokMSA_id:012508 X80749 Kocuria kristinae str. PM 129 DSM 20032 . 2.30.1.9.1.6.7.004 OTU 9 seqs prokMSA_id:075116 AF542072 Kocuria rhizophila prokMSA_id:076966 AF542074 Kocuria varians prokMSA_id:075322 AJ518817 Leifsonia aquatica isolate B26 prokMSA_id:016551 AY030315 Kocuria rhizophila strain JPL-9 prokMSA_id:019877 AY030341 Kocuria rhizophila strain KL-057 prokMSA_id:081250 AY211385 Kocuria sp. KMM 3905 prokMSA_id:012507 X86605 unnamed organism. prokMSA_id:012505 X87754 Kocuria varians DSM 20033 . prokMSA_id:012506 Y16264 Kocuria rhizophila str. TA68 strain DSM 11926. 2.30.1.9.1.6.7.007 OTU 1 seq prokMSA_id:021109 AJ131121 Rothia-like sp. CCUG 35957 2.30.1.9.1.6.7.008 OTU 1 seq prokMSA_id:024670 AJ344225 Kocuria rhizophila strain RNF1 2.30.1.9.1.6.7.009 OTU 1 seq prokMSA_id:037075 AY043359 Rothia amarae complete 2.30.1.9.1.6.7.010 OTU 2 seqs prokMSA_id:050169 AF385532 Kocuria sp. oral clone AW006 prokMSA_id:097729 AY378219 Glacial ice ML-B10 2.30.1.9.1.6.7.011 OTU 1 seq prokMSA_id:066473 AY100617 clone cvf63018 2.30.1.9.1.6.7.012 OTU 1 seq prokMSA_id:066476 AY100614 clone cvf70114 2.30.1.9.1.6.7.013 OTU 1 seq prokMSA_id:067402 AJ456965 Kocuria sp. RSc-6 isolate RSc-6 2.30.1.9.1.6.7.014 OTU 13 seqs prokMSA_id:012503 AB021326 str. rJ8. prokMSA_id:078681 AB094467 Kocuria sp. 2216.35.31 prokMSA_id:012500 AF196342 Micrococcus SMCC ZAT351 SMCC ZAT351. prokMSA_id:012501 AF196343 Micrococcus SMCC ZAT352 SMCC ZAT352. prokMSA_id:035999 AF336354 Gram-positive Wuba45 prokMSA_id:035206 AJ278868 Kocuria polaris strain CMS76or prokMSA_id:069365 AY144445 Kocuria palustris prokMSA_id:091666 AY345428 K2-25 prokMSA_id:095877 AY378194 Extreme arid zone HX-IIF25 prokMSA_id:097829 AY378268 Permafrost DT-IV20 prokMSA_id:012499 X87756 Kocuria rosea DSM 20447 . prokMSA_id:012502 Y11330 Kocuria rosea str. KSE ATCC 187 . prokMSA_id:012504 Y16263 Kocuria palustris str. TAGA27 strain DSM 11925. 2.30.1.9.1.6.7.015 OTU 1 seq prokMSA_id:085795 AY241411 Micrococcus sp. UST010620-001 2.30.1.9.1.6.7.016 OTU 1 seq prokMSA_id:086477 AY241412 Kocuria sp. UST010620-002 2.30.1.9.1.6.7.017 OTU 1 seq prokMSA_id:091153 AY345364 Ph10 2.30.1.9.1.6.7.018 OTU 1 seq prokMSA_id:091077 AY345408 K2-66 2.30.1.9.1.6.7.999 poor quality 22 seqs prokMSA_id:086396 AB092803 Kocuria kristinae strain:AMM003 prokMSA_id:080426 AB103093 Micrococcus luteus genes -23S ISR 23S and complete prokMSA_id:044018 AF175654 WJGRT-157 prokMSA_id:042659 AF182017 Kocuria sp. SCB58 prokMSA_id:027460 AF195448 Kocuria varians prokMSA_id:048817 AF226184 Maize root ZmrIs16 prokMSA_id:038030 AF323561 Arthrobacter sp. F5 prokMSA_id:043008 AF375912 Kocuria kristinae strain RRW1 prokMSA_id:069126 AF530935 Actinobacterium wj08 prokMSA_id:021457 AJ404497 Micrococcus MC2 prokMSA_id:039166 AJ404498 Micrococcus MC3 prokMSA_id:069878 AJ404588 Micrococcus MC7 prokMSA_id:057004 AJ518555 clone Qui4P1-83 prokMSA_id:055364 AJ518566 clone Qui4P2-17 prokMSA_id:078984 AJ536438 Kocuria palustris isolate 6:18 554BP prokMSA_id:078705 AJ536439 Kocuria palustris isolate 6:18 560BP prokMSA_id:061644 AY043546 Kocuria sp. 1S2.E12 prokMSA_id:079030 AY189618 clone EarCan091 prokMSA_id:078545 AY189619 actinobacterium clone EarCan092 prokMSA_id:086922 AY269864 Kocuria sp. 1 prokMSA_id:087851 AY278921 Kocuria sp. TB10 prokMSA_id:098263 AY378271 Permafrost DT-IX13 2.30.1.9.1.6.8 BRB.LINENS_SUBGROUP 80 seqs 2.30.1.9.1.6.8.002 OTU 5 seqs prokMSA_id:012512 AF133534 Brevibacterium otitidis str. Marseille 1998-67770 CIP 105044-UR. prokMSA_id:012513 AF133537 Oerskovia CIP101491 str. 491 CIP 101. prokMSA_id:073538 AJ488509 Brevibacterium lutescens strain CF87T prokMSA_id:012518 D88212 Brevibacterium sp. prokMSA_id:012514 X93593 Brevibacterium otitidis str. A37/73 NCFB 3053 . 2.30.1.9.1.6.8.003 OTU 3 seqs prokMSA_id:020188 AJ251418 Brevibacterium casei strain DSM 20657 prokMSA_id:086772 AY282467 Marine pd-17 prokMSA_id:012517 X76564 Brevibacterium casei NCDO 2048 . 2.30.1.9.1.6.8.004 OTU 2 seqs prokMSA_id:070723 AY017070 Brevibacterium linens AC825 prokMSA_id:012516 X76566 Brevibacterium linens NCDO 739 . 2.30.1.9.1.6.8.005 OTU 2 seqs prokMSA_id:089653 AJ564859 Brevibacterium sanguinis strain CF63T prokMSA_id:012515 X76703 str. GH443. 2.30.1.9.1.6.8.006 OTU 12 seqs prokMSA_id:072872 AF426142 Brevibacterium linens WS3541 prokMSA_id:072412 AF426143 Brevibacterium linens WS3542 prokMSA_id:074396 AY017066 Brevibacterium linens ATCC 9174 prokMSA_id:055232 AY017069 Brevibacterium linens WS1917; Seiler 195 prokMSA_id:064498 AY017073 Brevibacterium linens AC251 prokMSA_id:064496 AY017075 Brevibacterium linens NCDO 1002 prokMSA_id:064495 AY017076 Brevibacterium linens AC831 prokMSA_id:064494 AY017078 Brevibacterium linens WS2904 prokMSA_id:064490 AY017080 Brevibacterium linens WS2909 prokMSA_id:064489 AY017081 Brevibacterium linens WS2910 prokMSA_id:064504 AY017083 Brevibacterium linens WS3030 prokMSA_id:064488 AY017084 Brevibacterium linens WS3033 2.30.1.9.1.6.8.007 OTU 2 seqs prokMSA_id:036025 AJ251463 Brevibacterium paucivorans strain CF 62 prokMSA_id:078516 AY189633 clone EarCan106 2.30.1.9.1.6.8.008 OTU 1 seq prokMSA_id:055747 AY017074 Brevibacterium linens AC578 2.30.1.9.1.6.8.010 OTU 11 seqs prokMSA_id:044766 AF441323 PAH-contaminated sludge PB-28 prokMSA_id:064493 AY017077 Brevibacterium linens WS2903 prokMSA_id:064492 AY017079 Brevibacterium linens WS2906 prokMSA_id:082417 AY080985 Brevibacterium sp. clone ckl23 prokMSA_id:089248 AY299091 Brevibacterium aureum strain Enb12 prokMSA_id:089206 AY299092 Brevibacterium aureum strain Enb15 prokMSA_id:088687 AY299093 Brevibacterium aureum strain Enb17 prokMSA_id:012519 X76565 Brevibacterium epidermidis NCDO 2286 . prokMSA_id:012520 X76567 Brevibacterium iodinum NCDO 613 . prokMSA_id:012521 X77451 Brevibacterium linens. prokMSA_id:012522 X83813 Brevibacterium iodinum. 2.30.1.9.1.6.8.011 OTU 1 seq prokMSA_id:064499 AY017072 Brevibacterium linens AC478 2.30.1.9.1.6.8.012 OTU 1 seq prokMSA_id:064502 AY017067 Brevibacterium linens DSM 20426 2.30.1.9.1.6.8.013 OTU 1 seq prokMSA_id:072235 AY017071 Brevibacterium linens AC252 2.30.1.9.1.6.8.014 OTU 1 seq prokMSA_id:073628 AY017082 Brevibacterium linens WS2911 2.30.1.9.1.6.8.015 OTU 1 seq prokMSA_id:078601 AY189617 actinobacterium clone EarCan090 2.30.1.9.1.6.8.016 OTU 1 seq prokMSA_id:089039 AJ577724 Brevibacterium antarcticum strain DVS 5a2 2.30.1.9.1.6.8.017 OTU 1 seq prokMSA_id:091338 AY345569 clone T7-3-B09 2.30.1.9.1.6.8.999 poor quality 35 seqs prokMSA_id:032067 AF229116 Brevibacterium sp. HZM-1 prokMSA_id:073620 AF343951 Brevibacterium sp. NBF30 prokMSA_id:073416 AF426135 Brevibacterium linens DSM20425T prokMSA_id:072258 AF426136 Brevibacterium linens WS2801 prokMSA_id:070685 AF426137 Brevibacterium linens WS2888 prokMSA_id:072007 AF426138 Brevibacterium linens WS2890 prokMSA_id:073160 AF426139 Brevibacterium linens WS3211 prokMSA_id:070507 AF426140 Brevibacterium linens WS3215 prokMSA_id:074127 AF426141 Brevibacterium linens WS3460 prokMSA_id:066140 AF510045 Brevibacterium casei prokMSA_id:070157 AJ315491 Brevibacterium linens strain SB1 prokMSA_id:045095 AJ421814 clone CFA-6MS-2 prokMSA_id:028006 AJ421816 clone CFA-6MS-1 prokMSA_id:029694 AJ421821 clone CFB-6MS-2 prokMSA_id:023539 AJ421824 clone CFB-6MS-3 prokMSA_id:064006 AJ491826 Oerskovia sp. B6 strain B6 prokMSA_id:064002 AJ491829 Oerskovia sp. B17 strain B17 prokMSA_id:063999 AJ491830 Oerskovia sp. B18 strain B18 prokMSA_id:064000 AJ491831 Oerskovia sp. B19 strain B19 prokMSA_id:063997 AJ491834 Oerskovia sp. B28 strain B28 prokMSA_id:064503 AY017065 Corynebacterium sp. AC474 prokMSA_id:072593 AY017085 Brevibacterium linens WS3037 prokMSA_id:073297 AY017086 Brevibacterium linens WS3038 prokMSA_id:072008 AY017087 Brevibacterium linens WS3459 prokMSA_id:082332 AY080986 Brevibacterium sp. clone ckl24 prokMSA_id:075184 AY159166 MF_isolate_31 prokMSA_id:082960 AY228463 Brevibacterium celer KMM 3637 prokMSA_id:091056 AY266429 Marine SIMO-1579 prokMSA_id:085312 AY275507 Brevibacterium sp. MSB2033 prokMSA_id:088206 AY297139 marine strain 13686 prokMSA_id:095019 AY321538 Marine 13729 prokMSA_id:088236 AY321975 Brevibacterium casei strain BR1 prokMSA_id:012511 X93594 Brevibacterium mcbrellneri str. E2cr ATCC 49030 . prokMSA_id:022581 Y17962 Brevibacterium avium strain NCFB 3055 prokMSA_id:044536 Z77576 1-700 C1 2.30.1.9.1.7 DERMATOPHILUS_SUBGROUP 68 seqs 2.30.1.9.1.7.1 BCB.FAECIUM_SUBGROUP 39 seqs 2.30.1.9.1.7.1.008 OTU 3 seqs prokMSA_id:012527 X89560 Microthrix parvicella. prokMSA_id:012524 X89561 Microthrix parvicella. prokMSA_id:012525 X89774 Microthrix parvicella. 2.30.1.9.1.7.1.014 OTU 27 seqs prokMSA_id:077876 AB098579 Brachybacterium paraconglomeratum prokMSA_id:081998 AB101583 Jellyfish-degrading TN-2003 prokMSA_id:012530 AF041790 Brachybacterium S21F1 str. S21F1. prokMSA_id:030645 AF324202 Brachybacterium sp. V589 prokMSA_id:070209 AF434185 Brachybacterium arcticum strain Lact 5.2 complete prokMSA_id:071482 AF513397 Brachybacterium sp. Lact5.2 prokMSA_id:031079 AJ415376 Brachybacterium rhamnosum isolate LMG 19848 T prokMSA_id:071795 AJ415377 Brachybacterium paraconglomeratum isolate LMG 19861 T prokMSA_id:050941 AJ415378 Brachybacterium fresconis isolate LMG 20336 T prokMSA_id:029857 AJ415379 Brachybacterium fresconis isolate LMG 20333 prokMSA_id:074355 AJ415380 Brachybacterium sacelli isolate LMG 20338 prokMSA_id:019170 AJ415381 Brachybacterium sacelli isolate LMG 20339 prokMSA_id:073577 AJ415382 Brachybacterium sacelli isolate LMG 20343 prokMSA_id:070437 AJ415383 Brachybacterium sacelli isolate LMG 20342 prokMSA_id:070869 AJ415384 Brachybacterium sacelli isolate LMG 20345 T prokMSA_id:078446 AJ537574 Brachybacterium sp. C3H-21 strain C3H-21 prokMSA_id:081279 AY080987 Brachybacterium sp. clone ckl25 prokMSA_id:077571 AY167842 Brachybacterium conglomeratum strain SAFR-049 prokMSA_id:089178 AY336116 Brachybacterium paraconglomeratum strain SD-1 prokMSA_id:088994 AY336118 Brachybacterium paraconglomeratum strain SD-2 prokMSA_id:096867 AY378186 Extreme arid zone HX-IE19 prokMSA_id:012523 X83810 Brachybacterium faecium. prokMSA_id:012528 X91030 Brachybacterium conglomeratum NCIMB 9859. prokMSA_id:012531 X91031 Brachybacterium alimentarium CNRZ 925 . prokMSA_id:012526 X91032 Brachybacterium faecium DSM 4810 . prokMSA_id:012532 X91033 Brachybacterium nesterenkovii DSM 9573 . prokMSA_id:012529 X91657 Brachybacterium tyrofermentans CNRZ 926 . 2.30.1.9.1.7.1.015 OTU 1 seq prokMSA_id:080363 AF468445 Arctic sea ice ARK9984 2.30.1.9.1.7.1.016 OTU 1 seq prokMSA_id:081701 AY080988 Brachybacterium sp. clone ckl26 2.30.1.9.1.7.1.017 OTU 1 seq prokMSA_id:091430 AY345516 clone W4A-A01 2.30.1.9.1.7.1.999 poor quality 6 seqs prokMSA_id:019583 AF392749 clone LAH5 prokMSA_id:021047 AF428811 clone CR98-24-05 prokMSA_id:067669 AF485390 clone G3 prokMSA_id:025357 AJ404590 US19 prokMSA_id:025419 AJ421817 clone CFA-6MS-3 prokMSA_id:032007 AJ421819 clone CFA-6MS-4 2.30.1.9.1.7.2 DRB.HOMINIS_SUBGROUP 6 seqs 2.30.1.9.1.7.2.001 OTU 6 seqs prokMSA_id:051660 AF306837 Dermabacter hominis prokMSA_id:025478 AF343728 Dermabacter hominis prokMSA_id:012535 S71384 Dermabacter sp. str. CDC group 5 8. prokMSA_id:012534 X76728 Dermabacter hominis NCFB 2769 . prokMSA_id:012536 X76733 Dermabacter sp. str. CDC group 3 427. prokMSA_id:012533 X91034 Dermabacter hominis DSM 7083 . 2.30.1.9.1.7.3 DER.CONGOLENSIS_SUBGROUP 23 seqs 2.30.1.9.1.7.3.001 OTU 3 seqs prokMSA_id:018159 AJ243918 Dermatophilus congolensis DSM 44180 strain prokMSA_id:012540 L40615 Dermatophilus congolensis ATCC 14637 . prokMSA_id:012541 M59057 Dermatophilus congolensis ATCC 14637 . 2.30.1.9.1.7.3.002 OTU 1 seq prokMSA_id:012539 X87755 Kytococcus sedentarius DSM 20547 . 2.30.1.9.1.7.3.003 OTU 1 seq prokMSA_id:012538 Y14152 Demetria terragena str. HKI 0089 DSM 11295 . 2.30.1.9.1.7.3.004 OTU 1 seq prokMSA_id:012537 X87757 Dermacoccus nishinomiyaensis DSM 20448 . 2.30.1.9.1.7.3.005 OTU 4 seqs prokMSA_id:025122 AF387305 actinobacterium clone SBRA20 prokMSA_id:020014 AF387306 actinobacterium clone SBRA213 prokMSA_id:019760 AF387309 actinobacterium clone SBRA375 prokMSA_id:019020 AF387310 actinobacterium clone SBRA95 2.30.1.9.1.7.3.006 OTU 4 seqs prokMSA_id:062967 AF527583 clone LPB21 prokMSA_id:062962 AF527588 clone LPB61 prokMSA_id:056412 AF527591 clone LPU10 prokMSA_id:026586 AJ243919 Dermatophilus chelonae DSM 44178 strain 2.30.1.9.1.7.3.007 OTU 1 seq prokMSA_id:033876 AF226615 Dermatophilus crocodyli 2.30.1.9.1.7.3.008 OTU 1 seq prokMSA_id:052125 AJ297722 Kytococcus sp. Muenster 2000 2.30.1.9.1.7.3.009 OTU 1 seq prokMSA_id:081871 AY218579 clone KD2-23 2.30.1.9.1.7.3.999 poor quality 6 seqs prokMSA_id:049203 AB054926 Micrococcus sp. 1710 prokMSA_id:090488 AF491905 Actinomycete symbiont 9 of Acromyrmex octospinosus prokMSA_id:029511 AJ011367 clone D47 OTU K prokMSA_id:076126 AY159208 RO_isolate_12 prokMSA_id:086943 AY269868 Micrococcus sp. 5 prokMSA_id:096820 AY388631 Dermatophilus chelonae 2.30.1.9.1.8 BG.CASEILYTICA 3 seqs 2.30.1.9.1.8.001 OTU 1 seq prokMSA_id:012542 Y09911 Bogoriella caseilytica HKI 0088 . 2.30.1.9.1.8.999 poor quality 2 seqs prokMSA_id:068642 AB081815 seuence clone:A-08 prokMSA_id:022162 AF143753 actinomycete clone A10 2.30.1.9.2 ACTINOMYCES_AND_RELATIVES 449 seqs 2.30.1.9.2.1 ACTINOMYCES_SUBGROUP 218 seqs 2.30.1.9.2.1.1 ACT.VISCOSUS_SUBGROUP 87 seqs 2.30.1.9.2.1.1.001 OTU 2 seqs prokMSA_id:050137 AF355191 Actinomyces europaeus prokMSA_id:012562 Y08828 Actinomyces europaeus CCUG 32789A . 2.30.1.9.2.1.1.002 OTU 1 seq prokMSA_id:012561 X80412 Actinomyces denticolens NCTC 11490 . 2.30.1.9.2.1.1.003 OTU 2 seqs prokMSA_id:084683 AY244765 Actinomyces sp. 2002-42188 prokMSA_id:012560 X80414 Actinomyces gerencseriae DSM 6844 . 2.30.1.9.2.1.1.004 OTU 1 seq prokMSA_id:012558 X80411 Actinomyces howellii NCTC 11636 . 2.30.1.9.2.1.1.008 OTU 1 seq prokMSA_id:012548 X81061 Actinomyces bovis NCTC 11535 . 2.30.1.9.2.1.1.009 OTU 3 seqs prokMSA_id:040753 AJ234066 Actinomyces slackii strain CCUG 32792 clone 1 prokMSA_id:049536 AJ234067 Actinomyces slackii strain CCUG 32792 clone 2 prokMSA_id:012547 X82452 Actinomyces slackii NCTC 11923 . 2.30.1.9.2.1.1.011 OTU 28 seqs prokMSA_id:049418 AB062278 Actinomyces naeslundii prokMSA_id:017982 AF201993 Human oral AC1 prokMSA_id:045738 AF201994 Human oral AC3 prokMSA_id:046052 AF287747 Actinomyces sp. oral clone AG004 prokMSA_id:071223 AF287749 Actinomyces sp. oral clone AP064 prokMSA_id:046190 AF385553 Actinomyces sp. oral clone BL008 prokMSA_id:058304 AF543275 Actinomyces sp. ChDC B197 prokMSA_id:058296 AF543282 Actinomyces naeslundii prokMSA_id:058292 AF543286 Actinomyces viscosus prokMSA_id:058283 AF543297 Actinomyces sp. ChDC OS47 prokMSA_id:033822 AJ234038 Actinomyces naeslundii prokMSA_id:050539 AJ234045 Actinomyces naeslundii strain CCUG 33519 prokMSA_id:030901 AJ234048 Actinomyces naeslundii strain CCUG 33914 prokMSA_id:023267 AJ234049 Actinomyces sp. strain CCUG 33931 prokMSA_id:019228 AJ234050 Actinomyces naeslundii strain CCUG 34285 prokMSA_id:045176 AJ234051 Actinomyces naeslundii strain CCUG 34286 clone 1 prokMSA_id:074701 AJ234052 Actinomyces naeslundii strain strain CCUG 34286 clone 2 prokMSA_id:047140 AJ234053 Actinomyces viscosus strain CCUG 34288 prokMSA_id:016880 AJ234055 Actinomyces naeslundii strain CCUG 34808 prokMSA_id:027124 AJ234056 Actinomyces viscosus strain CCUG 35332 prokMSA_id:034481 AJ234057 Actinomyces naeslundii strain CCUG 3533 prokMSA_id:042280 AY008314 Actinomyces sp. oral clone EP005 prokMSA_id:022197 AY008315 Actinomyces sp. oral clone EP011 prokMSA_id:078526 AY189649 clone EarCan122 prokMSA_id:092445 AY349367 Actinomyces sp. oral clone JA063 prokMSA_id:012551 X81062 Actinomyces naeslundii NCTC 10301 . prokMSA_id:012553 X81063 Actinomyces sp. ATCC 49338. prokMSA_id:012545 X82453 Actinomyces viscosus NCTC 10951 . 2.30.1.9.2.1.1.012 OTU 2 seqs prokMSA_id:026061 AF479270 Actinomyces israelii strain A1 prokMSA_id:012543 X82450 Actinomyces israelii CIP 103259 . 2.30.1.9.2.1.1.013 OTU 4 seqs prokMSA_id:040580 AJ243791 Actinomyces urogenitalis prokMSA_id:016513 AJ243792 Actinomyces sp. M560/98/1 prokMSA_id:017127 AJ243893 Actinomyces urogenitalis mRNA prokMSA_id:021028 AJ243894 Actinomyces urogenitalis mRNA 2.30.1.9.2.1.1.014 OTU 2 seqs prokMSA_id:022109 AF202026 human oral A15 prokMSA_id:092289 AY349365 Actinomyces sp. oral clone IP073 2.30.1.9.2.1.1.015 OTU 2 seqs prokMSA_id:025076 AF202023 human oral A12 prokMSA_id:023149 AF287748 Actinomyces sp. oral strain B19SC 2.30.1.9.2.1.1.016 OTU 1 seq prokMSA_id:023668 AF201996 Human oral C5 2.30.1.9.2.1.1.017 OTU 1 seq prokMSA_id:024150 AJ234039 Actinomyces bowdenii strain M1956/95/1 2.30.1.9.2.1.1.018 OTU 1 seq prokMSA_id:026223 AJ251986 Actinomyces radicidentis 2.30.1.9.2.1.1.019 OTU 1 seq prokMSA_id:027867 AF202002 human oral A11 2.30.1.9.2.1.1.020 OTU 3 seqs prokMSA_id:028461 AJ234063 Actinomyces sp. strain M2231/94/1 prokMSA_id:031181 AJ249328 Actinomyces sp. CCUG 41709 prokMSA_id:047874 AJ276805 Actinomyces catuli 2.30.1.9.2.1.1.021 OTU 1 seq prokMSA_id:033488 AB062818 clone:BCf3-22 2.30.1.9.2.1.1.022 OTU 2 seqs prokMSA_id:045030 AJ249327 Actinomyces sp. CCUG 41710 prokMSA_id:033765 AJ276405 Actinomyces marimamalium strain CCUG 41710 2.30.1.9.2.1.1.023 OTU 1 seq prokMSA_id:058541 AJ507295 Actinomyces oricola strain CCUG 46090T 2.30.1.9.2.1.1.024 OTU 2 seqs prokMSA_id:044824 AF202025 human oral A14 prokMSA_id:043104 AF202027 human oral A16 2.30.1.9.2.1.1.025 OTU 1 seq prokMSA_id:051318 AF201995 human oral A4 2.30.1.9.2.1.1.026 OTU 1 seq prokMSA_id:070706 AY008316 Actinomyces sp. oral clone EP053 2.30.1.9.2.1.1.027 OTU 1 seq prokMSA_id:072081 AF253357 human infant N13B3 2.30.1.9.2.1.1.028 OTU 1 seq prokMSA_id:074646 AF385517 Actinomyces sp. oral clone DR002 2.30.1.9.2.1.1.029 OTU 1 seq prokMSA_id:079234 AJ540309 Actinomyces graevenitzii strain CCUG 27294T 2.30.1.9.2.1.1.030 OTU 1 seq prokMSA_id:092262 AY349363 Actinomyces sp. oral clone IO076 2.30.1.9.2.1.1.031 OTU 1 seq prokMSA_id:092721 AY349366 Actinomyces sp. oral clone IP081 2.30.1.9.2.1.1.032 OTU 1 seq prokMSA_id:092874 AY349364 Actinomyces sp. oral clone IO077 2.30.1.9.2.1.1.033 OTU 1 seq prokMSA_id:092907 AY349362 Actinomyces sp. oral clone GU067 2.30.1.9.2.1.1.999 poor quality 17 seqs prokMSA_id:012552 AF058052 Actinomyces naeslundii ATCC 12104 . prokMSA_id:033157 AF201997 human oral A6 prokMSA_id:035839 AF201998 human oral A7 prokMSA_id:046635 AF202024 human oral A13 prokMSA_id:028887 AJ234046 Actinomyces viscosus strain CCUG 33710 prokMSA_id:037360 AJ234060 Actinomyces sp. strain M1349/94/1 prokMSA_id:051499 AJ404526 Actinomyces AM2 prokMSA_id:032792 AJ428518 isolate B9 prokMSA_id:012557 M33908 Actinomyces viscosus DSM 43027. prokMSA_id:012555 M33911 Actinomyces naeslundii DSM 43013 . prokMSA_id:012546 M33912 Actinomyces israelii. prokMSA_id:012550 M33913 Actinomyces gerencseriae str. WVU 307 DSM 43322. prokMSA_id:012549 X53224 Actinomyces bovis DSM 43014 . prokMSA_id:012544 X53225 Actinomyces viscosus DSM 43027. prokMSA_id:012559 X53226 Actinomyces naeslundii DSM 43013 . prokMSA_id:012554 X67453 Actinomyces gerencseriae str. WVU 307 DSM 43322. prokMSA_id:012556 Y09589 Actinomyces graevenitzii CCUG 27294 . 2.30.1.9.2.1.2 ACT.NEUII_SUBGROUP 68 seqs 2.30.1.9.2.1.2.002 OTU 3 seqs prokMSA_id:074130 AF385522 Actinomyces sp. oral strain Hal-1083 prokMSA_id:087494 AY278611 Actinomyces genomosp. C2 prokMSA_id:012574 X78721 Actinomyces sp. str. APL11. 2.30.1.9.2.1.2.003 OTU 2 seqs prokMSA_id:030746 AF202001 human oral A10 prokMSA_id:012571 X82451 Actinomyces meyeri CIP 103148 . 2.30.1.9.2.1.2.004 OTU 3 seqs prokMSA_id:031717 AF202000 human oral A9 prokMSA_id:029001 AF287750 Actinomyces sp. oral strain B27SC prokMSA_id:012570 X80413 Actinomyces georgiae DSM 6843 . 2.30.1.9.2.1.2.006 OTU 2 seqs prokMSA_id:012567 X78720 Actinomyces turicensis str. APL10 DSM 9168 . prokMSA_id:012566 X87133 unnamed organism. 2.30.1.9.2.1.2.007 OTU 4 seqs prokMSA_id:086043 AY244767 Actinomyces sp. 2002-112570 prokMSA_id:012564 X71861 Actinomyces neuii subsp. neuii str. 97/90. prokMSA_id:012563 X71862 Actinomyces neuii subsp. anitratus str. 50/90. prokMSA_id:022903 Z33613 A.neuii LCDC 87-080 2.30.1.9.2.1.2.008 OTU 2 seqs prokMSA_id:023235 AF355192 Actinomyces sp. VA20732_01 prokMSA_id:072536 AJ404889 Actinomyces funkeii strain CCUG 42773 2.30.1.9.2.1.2.010 OTU 14 seqs prokMSA_id:012572 AF159688 clone HstpL15. prokMSA_id:070945 AF385504 Actinomyces sp. oral clone CT047 prokMSA_id:071551 AF385505 Actinomyces sp. oral clone CT068 prokMSA_id:029527 AF385521 Actinomyces sp. oral strain Hal-1065 prokMSA_id:024252 AJ234037 Actinomyces odontolyticus strain CCUG 18309 prokMSA_id:052899 AJ234040 Actinomyces odontolyticus strain CCUG 20536T prokMSA_id:045427 AJ234041 Actinomyces odontolyticus strain CCUG 28084 prokMSA_id:028910 AJ234042 Actinomyces odontolyticus strain CCUG 32834 prokMSA_id:037429 AJ234043 Actinomyces odontolyticus strain CCUG 32897 prokMSA_id:023262 AJ234047 Actinomyces odontolyticus strain CCUG 33767 prokMSA_id:025517 AJ234054 Actinomyces odontolyticus strain CCUG 34689 prokMSA_id:018829 AJ234058 Actinomyces sp. strain CCUG 37290 prokMSA_id:044463 AJ271894 Actinomyces lingnae strain CCUG 3286 prokMSA_id:012575 X80504 Actinomyces odontolyticus. 2.30.1.9.2.1.2.011 OTU 3 seqs prokMSA_id:050842 AJ234061 Actinomyces sp. strain M1429/94/1 prokMSA_id:047127 AJ243891 Actinomyces sp. CCUG 41706 mRNA prokMSA_id:044425 AJ243892 Actinomyces sp. CCUG 34479 mRNA 2.30.1.9.2.1.2.013 OTU 4 seqs prokMSA_id:094067 AF489584 Actinomyces hyovaginalis strain D3 prokMSA_id:094199 AF489585 Actinomyces hyovaginalis strain E6 prokMSA_id:047631 AJ293302 Actinomyces hyovaginalis strain UZCOR144 prokMSA_id:012569 X69616 Actinomyces hyovaginalis NCFB 2983 . 2.30.1.9.2.1.2.014 OTU 1 seq prokMSA_id:060136 AJ421779 Actinomyces sp. CCUG 44997 2.30.1.9.2.1.2.015 OTU 1 seq prokMSA_id:067513 AJ277385 Actinomyces suimastitidis strain CCUG 39276 2.30.1.9.2.1.2.016 OTU 1 seq prokMSA_id:082476 AJ427451 Actinomyces vaccimaxillae strain R10176T 2.30.1.9.2.1.2.017 OTU 1 seq prokMSA_id:086678 AY230769 Actinomyces sp. 'Smarlab BioMol-2300463' 2.30.1.9.2.1.2.018 OTU 1 seq prokMSA_id:090040 AY221601 soil clone HN1-52 2.30.1.9.2.1.2.019 OTU 1 seq prokMSA_id:092123 AY349361 Actinomyces sp. oral clone GU009 2.30.1.9.2.1.2.999 poor quality 25 seqs prokMSA_id:039037 AF096601 isolate JA50 prokMSA_id:052331 AF201999 Human oral AC8 prokMSA_id:041300 AF287751 Actinomyces sp. oral strain C29KA prokMSA_id:022838 AF457638 Actinomyces sp. VAMC 3971 prokMSA_id:036037 AF457639 Actinomyces meyeri S3008 prokMSA_id:032978 AF457640 Actinomyces meyeri S3672 prokMSA_id:070358 AF457641 Actinomyces sp. VAMC ref 103 prokMSA_id:020713 AJ234044 Actinomyces odontolyticus strain CCUG 3293 prokMSA_id:022416 AJ234064 Actinomyces hyovaginalis-like strain P31/96/2 prokMSA_id:038793 AJ234065 Actinomyces hyovaginalis-like strain S45/96/1 prokMSA_id:050503 AJ298641 Actinomyces hyovaginalis strain HJ28-BK2183.6 prokMSA_id:036127 AJ298644 Actinomyces hyovaginalis strain HJ39-BK2249.4 prokMSA_id:017508 AJ298645 Actinomyces hyovaginalis strain HJ40-BK3186.6 prokMSA_id:049504 AJ298646 Actinomyces hyovaginalis strain HJ44-BK2514.4 prokMSA_id:034741 AJ298647 Actinomyces hyovaginalis strain HJ45-BN2088.3 prokMSA_id:016414 AJ298648 Actinomyces hyovaginalis strain HJ46-BO2944.5 prokMSA_id:016368 AJ298650 Actinomyces hyovaginalis strain HJ61-BN960.6 prokMSA_id:036619 AJ298651 Actinomyces hyovaginalis strain HJ62-BL4739.2 prokMSA_id:045046 AJ298652 Actinomyces hyovaginalis strain HJ49-BN3304.2 prokMSA_id:020644 AJ404525 Actinomyces AM1 prokMSA_id:012577 M33910 Actinomyces odontolyticus DSM 43331. prokMSA_id:012576 X53227 Actinomyces odontolyticus DSM 43331. prokMSA_id:012568 X78719 Actinomyces radingae str. APL1 DSM 9169 . prokMSA_id:012565 X82608 Mobiluncus sp. str. 0960. prokMSA_id:012573 X82611 Actinomyces sp. 2.30.1.9.2.1.3 MOB.CURTISII_SUBGROUP 11 seqs 2.30.1.9.2.1.3.999 poor quality 11 seqs prokMSA_id:012581 X53186 Mobiluncus curtisii subsp. curtisii str. BV 345-16 ATCC 35241 . prokMSA_id:012583 X53187 Mobiluncus mulieris str. SV 17J ATCC 35243 . prokMSA_id:012578 X82602 Mobiluncus mulieris str. SV 17J ATCC 35243 . prokMSA_id:012585 X82603 Mobiluncus curtisii subsp. curtisii str. BV 345-16 ATCC 35241 . prokMSA_id:012584 X82604 Mobiluncus curtisii subsp. holmesii ATCC 35242 . prokMSA_id:012586 X82605 Mobiluncus sp. str. A294. prokMSA_id:012588 X82606 Mobiluncus sp. str. A345. prokMSA_id:012587 X82607 Mobiluncus sp. str. A543. prokMSA_id:012579 X86004 Mobiluncus mulieris str. SV 17J ATCC 35243 . prokMSA_id:012582 X86005 Mobiluncus curtisii subsp. curtisii str. BV 345-16 ATCC 35241 . prokMSA_id:012580 X86006 Mobiluncus curtisii subsp. holmesii ATCC 35242 . 2.30.1.9.2.1.4 ACT.HORDEOVULNERIS 2 seqs 2.30.1.9.2.1.4.001 OTU 1 seq prokMSA_id:012589 X82448 Actinomyces hordeovulneris CIP 103149 . 2.30.1.9.2.1.4.999 poor quality 1 seq prokMSA_id:053241 AF175652 WJGRT-153 2.30.1.9.2.1.5 ABC.PYOGENES_SUBGROUP 45 seqs 2.30.1.9.2.1.5.003 OTU 5 seqs prokMSA_id:047347 AJ298656 Arcanobacterium sp. HJ55-94AV329.2 strain HJ55-94AV329.2 prokMSA_id:029935 AJ298658 Arcanobacterium sp. HJ57-14E strain HJ57-14E prokMSA_id:012595 X79224 Arcanobacterium bernardiae str. LCDC 89-0504 DSM 9152 . prokMSA_id:012597 X79225 Arcanobacterium pyogenes NCTC 5224 . prokMSA_id:029290 Z33616 Actinomyces CDC group 2 LCDC 89-055 2.30.1.9.2.1.5.004 OTU 4 seqs prokMSA_id:081251 AF487680 Actinobaculum schaalii strain LL prokMSA_id:081857 AF487681 Actinobaculum schaalii strain PA prokMSA_id:012594 Y10773 Actinobaculum schaalii CCUG 27420 . prokMSA_id:012593 Y12329 Actinobaculum schaalii CCUG 27420 . 2.30.1.9.2.1.5.005 OTU 1 seq prokMSA_id:012592 S83623 Actinobaculum suis DSM 20639 . 2.30.1.9.2.1.5.006 OTU 1 seq prokMSA_id:012591 X73952 Arcanobacterium haemolyticum str. 53/W/1 NCTC 9697. 2.30.1.9.2.1.5.007 OTU 1 seq prokMSA_id:012590 X97049 Arcanobacterium phocae str. M2546/94/1 DSM 10004. 2.30.1.9.2.1.5.008 OTU 2 seqs prokMSA_id:016861 AJ243793 Arcanobacterium sp. CCUG 41704# prokMSA_id:025077 AJ243794 Arcanobacterium sp. CCUG 41705# 2.30.1.9.2.1.5.009 OTU 1 seq prokMSA_id:019270 AF433168 Actinomyces hongkongensis 2.30.1.9.2.1.5.010 OTU 11 seqs prokMSA_id:019834 AJ318410 Mobiluncus mulieris strain CCUG 20071T prokMSA_id:077875 AJ427625 Mobiluncus mulieris strain CCUG 20071T prokMSA_id:094183 AJ576048 Mobiluncus mulieris strain CCUG 14426 prokMSA_id:093725 AJ576050 Mobiluncus mulieris strain CCUG 17992 prokMSA_id:094295 AJ576076 Mobiluncus mulieris strain CCUG 22331 prokMSA_id:094392 AJ576077 Mobiluncus mulieris strain CCUG 22332 prokMSA_id:094880 AJ576078 Mobiluncus mulieris strain CCUG 22333 prokMSA_id:094580 AJ576079 Mobiluncus mulieris strain CCUG 22334 prokMSA_id:094292 AJ576080 Mobiluncus mulieris strain CCUG 22335 prokMSA_id:094305 AJ576081 Mobiluncus mulieris strain CCUG 22336 prokMSA_id:094860 AJ576087 Mobiluncus mulieris strain CCUG 30101 2.30.1.9.2.1.5.011 OTU 1 seq prokMSA_id:024783 AJ234059 Arcanobacterium haemolyticum strain CIP 103370 2.30.1.9.2.1.5.012 OTU 1 seq prokMSA_id:033696 AJ250959 Arcanobacterium sp. strain M430/94/2 2.30.1.9.2.1.5.013 OTU 1 seq prokMSA_id:071888 AF487679 Actinobaculum massiliae strain CIP 107404 2.30.1.9.2.1.5.014 OTU 3 seqs prokMSA_id:073602 AY008311 Actinobaculum sp. oral clone EL030 prokMSA_id:083011 AY207066 Actinobaculum sp. P2P_19 P1 prokMSA_id:087175 AY282578 Actinobaculum sp. BM#101342 2.30.1.9.2.1.5.015 OTU 1 seq prokMSA_id:080785 AJ439453 Actinobaculum urinalis strain CCUG 46093T 2.30.1.9.2.1.5.999 poor quality 12 seqs prokMSA_id:022720 AF096602 isolate JA55 prokMSA_id:045447 AF457642 Actinomyces sp. VAMC Ref 113 prokMSA_id:031123 AJ234062 Arcanobacterium sp. strain M214/96/1 prokMSA_id:036531 AJ298639 Arcanobacterium bernardiae strain LMG-18721 prokMSA_id:034852 AJ298640 Arcanobacterium pyogenes strain LMG-16162 prokMSA_id:042088 AJ298642 Actinomyces sp. HJ31-A strain HJ31-A prokMSA_id:022799 AJ298643 Actinomyces sp. HJ32-BO2946.8 strain HJ32-BO2946.8 prokMSA_id:047022 AJ298653 Arcanobacterium sp. HJ51-B strain HJ51-B prokMSA_id:027690 AJ298654 Arcanobacterium sp. HJ52-Da strain HJ52-Da prokMSA_id:031281 AJ298655 Arcanobacterium sp. HJ54-96AV737 strain HJ54-96AV737 prokMSA_id:052741 AJ298657 Arcanobacterium sp. HJ56-2F170.1 strain HJ56-2F170.1 prokMSA_id:012596 M29552 Arcanobacterium pyogenes ATCC 19411 . 2.30.1.9.2.1.6 JNS.DENITRIFICANS_SUBGROUP 5 seqs 2.30.1.9.2.1.6.001 OTU 4 seqs prokMSA_id:078074 AB098583 Jonesia sp. TUT1015 prokMSA_id:077730 AB098584 Jonesia sp. TUT1016 prokMSA_id:012600 X78420 Jonesia denitrificans NCTC 10816 . prokMSA_id:012599 X83811 Jonesia denitrificans. 2.30.1.9.2.1.6.002 OTU 1 seq prokMSA_id:012598 U27850 clone pCON4. 2.30.1.9.2.2 BIFIDOBACTERIUM_SUBGROUP 231 seqs 2.30.1.9.2.2.1 BIF.MINIMUM_SUBGROUP 14 seqs 2.30.1.9.2.2.1.002 OTU 1 seq prokMSA_id:012604 D86188 Bifidobacterium indicum JCM 1302. 2.30.1.9.2.2.1.003 OTU 1 seq prokMSA_id:019706 AF458075 Gardnerella vaginalis 2.30.1.9.2.2.1.004 OTU 1 seq prokMSA_id:024773 AF321296 Bifidobacterium sp. group II-3 2.30.1.9.2.2.1.005 OTU 1 seq prokMSA_id:034238 AF371711 clone p-3348-23G2 2.30.1.9.2.2.1.007 OTU 3 seqs prokMSA_id:095211 AY388408 clone Adhuright25 prokMSA_id:012606 D86182 Bifidobacterium angulatum str. strain ATCC 27535 . prokMSA_id:043993 D86192 Bifidobacterium merycicum 2.30.1.9.2.2.1.008 OTU 1 seq prokMSA_id:078420 AY174103 Bifidobacterium minimum 2.30.1.9.2.2.1.999 poor quality 6 seqs prokMSA_id:068393 AY013816 Bifidobacterium sp. 3-3A prokMSA_id:012601 M58730 Bifidobacterium asteroides ATCC 25910 . prokMSA_id:012603 M58733 Bifidobacterium coryneforme ATCC 25911 . prokMSA_id:012605 M58741 Bifidobacterium minimum ATCC 27538 . prokMSA_id:012607 M58744 Gardnerella vaginalis ATCC 14018 . prokMSA_id:012602 U10151 Bifidobacterium thermophilum ATCC 25525 . 2.30.1.9.2.2.2 BIF.CATENULATUM_SUBGROUP 66 seqs 2.30.1.9.2.2.2.005 OTU 32 seqs prokMSA_id:058023 AB094149 clone:C-34 prokMSA_id:058019 AB094151 clone:C-18 prokMSA_id:070397 AF253349 human infant S3M prokMSA_id:070122 AF253364 human infant N55G prokMSA_id:016594 AF275881 Bifidobacterium adolescentis clone nru-1 prokMSA_id:030243 AF275882 Bifidobacterium adolescentis clone nru-5 prokMSA_id:022676 AF275883 Bifidobacterium sp. 15B prokMSA_id:039484 AF275885 Bifidobacterium sp. 15A prokMSA_id:045910 AF275893 Bifidobacterium sp. 9B prokMSA_id:029658 AF287759 Bifidobacterium sp. oral strain A32ED prokMSA_id:050025 AF306789 Bifidobacterium sp. PL1 prokMSA_id:021503 AF432082 Bifidobacterium catenulatum prokMSA_id:056572 AF530323 clone cadhufec19d06yvb prokMSA_id:061042 AF530355 clone cadhufec18e04sav prokMSA_id:069089 AY166521 Bifidobacterium pseudocatenulatum strain T1-3-15 prokMSA_id:070695 AY166523 Bifidobacterium pseudocatenulatum strain Z2-3 prokMSA_id:092007 AY338285 clone BREC_36 prokMSA_id:091349 AY338286 clone BREC_48 prokMSA_id:091112 AY338287 clone BREC_6 prokMSA_id:091355 AY338335 clone BREC_84 prokMSA_id:092451 AY343162 clone REC1M_31 prokMSA_id:092631 AY343264 clone DONOR_74 prokMSA_id:094767 AY373326 clone Dpcom132 prokMSA_id:097931 AY388403 clone Adhuright10 prokMSA_id:095823 AY388412 clone Adhuright33 prokMSA_id:095747 AY388428 clone Adhuleft05 prokMSA_id:097397 AY388449 clone Adhuleft72 prokMSA_id:012613 D86183 Bifidobacterium dentium ATCC 27534. prokMSA_id:012610 D86187 Bifidobacterium pseudocatenulatum str. strain JCM 1200. prokMSA_id:012615 D86197 Bifidobacterium ruminantium JCM 8222. prokMSA_id:012608 M84784 Bifidobacterium catenulatum str. B669 ATCC 27539 . prokMSA_id:012611 M84785 Bifidobacterium pseudocatenulatum ATCC 27919 . 2.30.1.9.2.2.2.006 OTU 1 seq prokMSA_id:049417 AF333390 Bifidobacterium pseudocatenulatum 2.30.1.9.2.2.2.007 OTU 1 seq prokMSA_id:078797 AY174108 Bifidobacterium psychroaerophilum 2.30.1.9.2.2.2.999 poor quality 32 seqs prokMSA_id:062118 AB064844 Bifidobacterium sp. clone:NB2C2 prokMSA_id:062117 AB064845 Bifidobacterium sp. clone:NS2A7 prokMSA_id:062114 AB064847 Bifidobacterium sp. clone:NS2E2 prokMSA_id:062048 AB064925 Bifidobacterium sp. CB8 prokMSA_id:062046 AB064927 Bifidobacterium sp. CS16 prokMSA_id:058686 AB080903 Bifidobacterium sp. CJ59 prokMSA_id:071537 AF253360 human infant N62C prokMSA_id:071686 AF253366 human infant S7B prokMSA_id:069933 AF253367 human infant S7A prokMSA_id:071274 AF253371 human infant L14E prokMSA_id:070979 AF253372 human infant L14B prokMSA_id:071650 AF253373 human infant L157C prokMSA_id:071024 AF253376 human infant L127dC prokMSA_id:041283 AF275884 Bifidobacterium sp. 13D prokMSA_id:023359 AF275886 Bifidobacterium sp. 15D prokMSA_id:035797 AF275887 Bifidobacterium sp. 16B prokMSA_id:033870 AF275888 Bifidobacterium sp. 16C prokMSA_id:037945 AF275889 Bifidobacterium sp. 16F prokMSA_id:037674 AF275890 Bifidobacterium sp. 7B prokMSA_id:036261 AF275891 Bifidobacterium sp. 7G prokMSA_id:023623 AF275892 Bifidobacterium sp. 9A prokMSA_id:023491 AF275894 Bifidobacterium sp. 9C prokMSA_id:068394 AY013814 Bifidobacterium sp. 1-2A prokMSA_id:068395 AY013815 Bifidobacterium sp. 1-2B prokMSA_id:068392 AY013818 Bifidobacterium sp. 3-4B prokMSA_id:068391 AY013819 Bifidobacterium sp. 2-3A prokMSA_id:068390 AY013820 Bifidobacterium sp. 1-5A prokMSA_id:069291 AY166524 Bifidobacterium thermacidophilum strain 2h4 prokMSA_id:012614 M58729 Bifidobacterium adolescentis ATCC 15703 . prokMSA_id:012609 M58732 Bifidobacterium catenulatum str. B669 ATCC 27539 . prokMSA_id:012612 M58735 Bifidobacterium dentium ATCC 15423. prokMSA_id:012616 M84775 Bifidobacterium angulatum str. strain ATCC 27535 . 2.30.1.9.2.2.3 BIF.BIFIDUM_SUBGROUP 37 seqs 2.30.1.9.2.2.3.001 OTU 4 seqs prokMSA_id:012628 M84777 Bifidobacterium bifidum. prokMSA_id:012627 S83624 Bifidobacterium bifidum DSM 20456 . prokMSA_id:012624 U25951 Bifidobacterium bifidum KCTC 3202. prokMSA_id:012617 U25952 Bifidobacterium bifidum KCTC 3202. 2.30.1.9.2.2.3.003 OTU 2 seqs prokMSA_id:012622 D89378 Bifidobacterium subtile DSM 20096. prokMSA_id:012623 D89379 Bifidobacterium subtile JCM 7109. 2.30.1.9.2.2.3.004 OTU 1 seq prokMSA_id:012621 D89332 Bifidobacterium inopinatum str. strain DSM 10107. 2.30.1.9.2.2.3.005 OTU 1 seq prokMSA_id:012620 D89331 Bifidobacterium denticolens str. strain DSM 10105. 2.30.1.9.2.2.3.006 OTU 1 seq prokMSA_id:012619 AB029087 Bifidobacterium inopinatum str. strain DSM 10107. 2.30.1.9.2.2.3.009 OTU 2 seqs prokMSA_id:017910 AF227870 Bifidobacterium sp. 65947 prokMSA_id:063018 AJ307005 Bifidobacterium scardovii strain CCUG 13008 2.30.1.9.2.2.3.011 OTU 9 seqs prokMSA_id:012618 AB016246 Bifidobacterium thermophilum. prokMSA_id:025225 AB034094 rumen 3C3d-20 prokMSA_id:042077 AB034095 rumen 4C3d-16 prokMSA_id:017245 AF321295 Bifidobacterium sp. group I-3 prokMSA_id:035146 AF357558 mpn-isolate group 10 prokMSA_id:055846 AY148470 Bifidobacterium thermacidophilum subsp. suis complete prokMSA_id:069182 AY166525 Bifidobacterium thermacidophilum strain 2h6 prokMSA_id:069534 AY166526 Bifidobacterium thermacidophilum strain B12 prokMSA_id:012625 D86190 Bifidobacterium boum JCM 1211. 2.30.1.9.2.2.3.012 OTU 3 seqs prokMSA_id:072858 AF385524 Bifidobacterium sp. oral strain H6-M4 prokMSA_id:063870 AJ278694 Bifidobacterium urinalis strain CCUG 26938 prokMSA_id:063869 AJ278695 Bifidobacterium urinalis strain CCUG 34444 2.30.1.9.2.2.3.013 OTU 1 seq prokMSA_id:070033 AY166528 Bifidobacterium thermacidophilum subsp. suis strain P3-11 2.30.1.9.2.2.3.014 OTU 2 seqs prokMSA_id:070349 AF287758 Bifidobacterium sp. oral clone CX010 prokMSA_id:086784 AY278626 Scardovia genomosp. C1 2.30.1.9.2.2.3.999 poor quality 11 seqs prokMSA_id:062115 AB064848 Bifidobacterium sp. clone:NS4E10 prokMSA_id:062047 AB064926 Bifidobacterium sp. CB38 prokMSA_id:062044 AB064929 Bifidobacterium sp. CS30 prokMSA_id:074293 AF253395 human infant D39Ebif prokMSA_id:070312 AF253397 human infant N14A prokMSA_id:073241 AY166522 Bifidobacterium pseudocatenulatum strain T2-3-4 prokMSA_id:070126 AY166527 Bifidobacterium thermacidophilum strain I-1 prokMSA_id:074292 AY166529 Bifidobacterium boum strain 03-4-8 prokMSA_id:069235 AY166530 Bifidobacterium boum strain P2-12 prokMSA_id:091610 AY336962 Bifidobacterium sp. MW-81 prokMSA_id:012626 M38018 Bifidobacterium bifidum ATCC 29521 . 2.30.1.9.2.2.4 BIF.LACTIS_SUBGROUP 41 seqs 2.30.1.9.2.2.4.001 OTU 1 seq prokMSA_id:012640 D86193 Bifidobacterium magnum JCM 8219. 2.30.1.9.2.2.4.003 OTU 1 seq prokMSA_id:012633 D86189 Bifidobacterium gallicum JCM 8224. 2.30.1.9.2.2.4.004 OTU 1 seq prokMSA_id:012632 D86186 Bifidobacterium choerinum ATCC 27686. 2.30.1.9.2.2.4.007 OTU 11 seqs prokMSA_id:042998 AB027536 Bifidobacterium animalis prokMSA_id:036651 AB050135 Bifidobacterium animalis strain:Y 93050 prokMSA_id:048030 AB050136 Bifidobacterium lactis strain:YIT 4121 prokMSA_id:052295 AB050137 Bifidobacterium animalis strain:YIT 4119 prokMSA_id:044833 AB050138 Bifidobacterium animalis strain:YIT 4090 prokMSA_id:051788 AJ311604 Bifidobacterium infantis strain Y1 prokMSA_id:073912 AY166508 Bifidobacterium animalis strain B83 prokMSA_id:012631 D86185 Bifidobacterium animalis JCM 1190. prokMSA_id:012630 X89111 Bifidobacterium sp. prokMSA_id:012629 X89513 Bifidobacterium lactis str. UR1. prokMSA_id:071420 X89513 B.lactis and 23S 2.30.1.9.2.2.4.009 OTU 9 seqs prokMSA_id:069743 AY166515 Bifidobacterium pseudolongum subsp. globosum strain 02-2 prokMSA_id:069649 AY166516 Bifidobacterium pseudolongum subsp. globosum strain 7#-3-7 prokMSA_id:069376 AY166518 Bifidobacterium pseudolongum subsp. globosum strain 09-25-2 prokMSA_id:070773 AY166519 Bifidobacterium pseudolongum subsp. globosum strain Fb9 prokMSA_id:072459 AY166520 Bifidobacterium pseudolongum subsp. globosum strain MU8 prokMSA_id:078906 AY174105 Bifidobacterium pseudolongum subsp. globosum prokMSA_id:078584 AY174106 Bifidobacterium pseudolongum subsp. pseudolongum prokMSA_id:012636 D86194 Bifidobacterium pseudolongum subsp. globosum JCM 5820. prokMSA_id:012637 D86195 Bifidobacterium pseudolongum subsp. pseudolongum JCM 1205. 2.30.1.9.2.2.4.999 poor quality 18 seqs prokMSA_id:035779 AB050132 Bifidobacterium animalis strain:Y 98067 prokMSA_id:039051 AB050133 Bifidobacterium animalis strain:Y 96007 prokMSA_id:041870 AB050134 Bifidobacterium animalis strain:Y 93050 prokMSA_id:059302 AY122355 Bifidobacterium sp. clone III-11 prokMSA_id:057329 AY151397 Bifidobacterium animalis prokMSA_id:056597 AY166509 Bifidobacterium animalis strain D1 prokMSA_id:071683 AY166510 Bifidobacterium animalis strain III-1 prokMSA_id:069371 AY166511 Bifidobacterium animalis strain III-6 prokMSA_id:073790 AY166512 Bifidobacterium animalis strain JB-1 prokMSA_id:069112 AY166513 Bifidobacterium pseudolongum subsp. globosum strain 1-23-3 prokMSA_id:069472 AY166514 Bifidobacterium pseudolongum subsp. globosum strain 1-25-3 prokMSA_id:069681 AY166517 Bifidobacterium pseudolongum subsp. globosum strain 7#-10-11 prokMSA_id:091339 AY336964 Bifidobacterium sp. MW-623 prokMSA_id:091078 AY336965 Bifidobacterium sp. MW-222 prokMSA_id:012638 M58734 Bifidobacterium cuniculi ATCC 27916 . prokMSA_id:012635 M58736 Bifidobacterium pseudolongum subsp. globosum ATCC 25865 . prokMSA_id:012639 M58740 Bifidobacterium magnum ATCC 27540 . prokMSA_id:012634 X70971 Bifidobacterium animalis ATCC 25527 . 2.30.1.9.2.2.5 BIF.INFANTIS_SUBGROUP 73 seqs 2.30.1.9.2.2.5.004 OTU 6 seqs prokMSA_id:040795 AF376434 ckncm201-F4M.1C2 prokMSA_id:012646 D86191 Bifidobacterium gallinarum JCM 6291. prokMSA_id:012647 D86196 Bifidobacterium pullorum JCM 1214. prokMSA_id:012648 D89328 Bifidobacterium saeculare str. strain DSM 6531. prokMSA_id:012649 D89329 Bifidobacterium subtile JCM 7109. prokMSA_id:012650 D89330 Bifidobacterium saeculare DSM 6533. 2.30.1.9.2.2.5.006 OTU 29 seqs prokMSA_id:046223 AB006658 Bifidobacterium breve prokMSA_id:058020 AB094150 clone:C-73 prokMSA_id:055819 AB094179 clone:G-92 prokMSA_id:057999 AB094180 clone:G-8 prokMSA_id:057996 AB094181 clone:G-7 prokMSA_id:072820 AF253365 human infant S6C prokMSA_id:071297 AF321297 Bifidobacterium sp. group III-3 prokMSA_id:056345 AF491832 Bifidobacterium breve strain JCM 1273 prokMSA_id:068379 AF491833 Bifidobacterium breve strain JCM 7020 prokMSA_id:068377 AF491834 Bifidobacterium breve strain JCM 7016 prokMSA_id:068373 AF491835 Bifidobacterium breve strain JCM 7017 prokMSA_id:068376 AF491836 Bifidobacterium breve strain JCM 7019 prokMSA_id:032427 AJ270492 Butyrate-producing T1-817 prokMSA_id:028109 AJ311605 Bifidobacterium breve strain Y8 prokMSA_id:037229 AJ311606 Bifidobacterium longum strain Y10 prokMSA_id:057338 AY151398 Bifidobacterium infantis strain KB 10 prokMSA_id:055278 AY151399 Bifidobacterium longum strain KB 6 prokMSA_id:069636 AY166532 Bifidobacterium infantis strain D6-9-6 prokMSA_id:071956 AY166534 Bifidobacterium infantis strain D30-3-10 prokMSA_id:078304 AY172656 Bifidobacterium breve strain KB 69 prokMSA_id:077771 AY172657 Bifidobacterium breve strain KB 72 prokMSA_id:082861 AY267190 Bifidobacterium breve strain KB76 prokMSA_id:096324 AY388409 clone Adhuright26 prokMSA_id:095951 AY388450 clone Adhuleft76 prokMSA_id:012645 D86184 Bifidobacterium infantis ATCC 15697 . prokMSA_id:012659 M84776 Bifidobacterium breve. prokMSA_id:012662 M84781 Bifidobacterium longum ATCC 15707 . prokMSA_id:012641 M84782 Bifidobacterium infantis ATCC 25962. prokMSA_id:012657 M84783 Bifidobacterium infantis ATCC 15697 . 2.30.1.9.2.2.5.007 OTU 2 seqs prokMSA_id:078555 AY174104 Bifidobacterium aerophilum prokMSA_id:078586 AY174107 Bifidobacterium aerophilum 2.30.1.9.2.2.5.008 OTU 1 seq prokMSA_id:087249 AY278612 Bifidobacteriaceae genomosp. C1 2.30.1.9.2.2.5.999 poor quality 35 seqs prokMSA_id:062116 AB064846 Bifidobacterium sp. clone:NS2C2 prokMSA_id:062042 AB064928 Bifidobacterium sp. CS2 prokMSA_id:058684 AB080904 Bifidobacterium sp. CJ75 prokMSA_id:072355 AF253362 human infant N158-7 prokMSA_id:071040 AF253363 human infant N158A prokMSA_id:070489 AF253368 human infant S6A prokMSA_id:070994 AF253369 human infant D5D prokMSA_id:074379 AF253370 human infant D35A1 prokMSA_id:072304 AF253392 human infant N108D prokMSA_id:070183 AF253394 human infant L14D prokMSA_id:070546 AF316538 D26B3 prokMSA_id:025146 AF376456 ckncm223-F4M.2C7 prokMSA_id:071056 AF481819 clone N62A prokMSA_id:061793 AF528507 Bifidobacterium infantis PL9503 prokMSA_id:059719 AF538862 Bifidobacterium infantis strain PL9506 prokMSA_id:056292 AY013817 Bifidobacterium sp. 3-4A prokMSA_id:074660 AY166531 Bifidobacterium infantis strain 6w-50 prokMSA_id:070569 AY166533 Bifidobacterium infantis strain D30-3-3 prokMSA_id:069276 AY166535 Bifidobacterium infantis strain D30-3-11 prokMSA_id:069603 AY166536 Bifidobacterium infantis strain L2 prokMSA_id:069120 AY166537 Bifidobacterium longum strain L4 prokMSA_id:056202 AY166538 Bifidobacterium longum strain TJ prokMSA_id:091432 AY336963 Bifidobacterium sp. MW-613 prokMSA_id:012653 M58731 Bifidobacterium infantis ATCC 15700. prokMSA_id:012643 M58737 Bifidobacterium indicum ATCC 25912 . prokMSA_id:012642 M58738 Bifidobacterium infantis ATCC 15697 . prokMSA_id:012644 M58739 Bifidobacterium longum ATCC 15707 . prokMSA_id:012656 M58742 Bifidobacterium pseudolongum subsp. pseudolongum str. PNC-2-9G ATCC prokMSA_id:012651 M58743 Bifidobacterium suis ATCC 27533 . prokMSA_id:012658 U10152 Bifidobacterium longum ATCC 15708. prokMSA_id:012660 X70972 Bifidobacterium breve ATCC 15698. prokMSA_id:012652 X70973 Bifidobacterium infantis CIP 6469 . prokMSA_id:012654 X70974 Bifidobacterium infantis ATCC 15697 . prokMSA_id:012655 X70974 Bifidobacterium infantis ATCC 15697 . prokMSA_id:012661 X70974 Bifidobacterium infantis CIP 6469 . 2.30.1.9.3 KINEOSPORIA_GROUP 77 seqs 2.30.1.9.3.003 OTU 8 seqs prokMSA_id:012700 AB003931 Kineosporia aurantiaca JCM 3230 . prokMSA_id:012698 AB003932 Kineosporia succinea str. I-273 JCM 9957 . prokMSA_id:024568 AF095336 Kineosporia aurantiaca prokMSA_id:041029 AF131372 Kineosporia sp. IM-0098 prokMSA_id:042783 AF131373 Kineosporia sp. IM-1356 prokMSA_id:012688 D86937 Kineosporia aurantiaca IFO 14067 . prokMSA_id:012686 X87110 Kineosporia aurantiaca ATCC 29727 . prokMSA_id:012699 X87617 str. SR 11. 2.30.1.9.3.004 OTU 1 seq prokMSA_id:012697 X87311 str. SR 139. 2.30.1.9.3.005 OTU 1 seq prokMSA_id:012696 AB003933 Kineosporia rhizophila str. I-449 JCM 9960 . 2.30.1.9.3.006 OTU 5 seqs prokMSA_id:012692 AF060671 str. AS2988. prokMSA_id:012693 AF060672 str. AS2987. prokMSA_id:012694 AF060676 str. AS2978. prokMSA_id:025938 AF060686 Kineococcus-like AS3138 complete prokMSA_id:012695 AF060689 str. AS3187. 2.30.1.9.3.007 OTU 2 seqs prokMSA_id:012691 AB003934 Kineosporia rhamnosa str. I-113 JCM 9953. prokMSA_id:012689 AB003935 Kineosporia rhamnosa str. I-132 JCM 9954 . 2.30.1.9.3.008 OTU 1 seq prokMSA_id:012690 X92365 str. G10 dolomite marbel Namibia. 2.30.1.9.3.009 OTU 1 seq prokMSA_id:012687 AF013533 unnamed organism. 2.30.1.9.3.010 OTU 10 seqs prokMSA_id:012666 AF060670 str. AS2989. prokMSA_id:012668 AF060674 str. AS2964. prokMSA_id:012669 AF060675 str. AS2965. prokMSA_id:012670 AF060677 str. AS2985. prokMSA_id:012677 AF060685 str. AS3090. prokMSA_id:012678 AF060687 str. AS3142. prokMSA_id:012680 AF060690 str. AS3380. prokMSA_id:012685 AF060695 str. AS3641. prokMSA_id:033896 AF095334 Kineococcus-like str. AS3642 prokMSA_id:031916 AF095335 Kineococcus-like str. AS3650 2.30.1.9.3.012 OTU 1 seq prokMSA_id:012681 AF060691 str. AS3381. 2.30.1.9.3.013 OTU 4 seqs prokMSA_id:012674 AF060682 str. AS3079. prokMSA_id:012675 AF060683 str. AS3080. prokMSA_id:012676 AF060684 str. AS3088. prokMSA_id:012679 AF060688 str. AS3148. 2.30.1.9.3.014 OTU 4 seqs prokMSA_id:012667 AF060673 str. AS2960. prokMSA_id:012671 AF060679 str. AS2953. prokMSA_id:012672 AF060680 str. AS3041. prokMSA_id:012673 AF060681 str. AS3042. 2.30.1.9.3.015 OTU 1 seq prokMSA_id:012665 AB007420 Kineococcus aurantiacus IFO 15268 . 2.30.1.9.3.017 OTU 6 seqs prokMSA_id:012682 AF060692 str. AS3382. prokMSA_id:012683 AF060693 str. AS3630. prokMSA_id:012684 AF060694 str. AS3635. prokMSA_id:033667 AF247813 Kineococcus-like str. SRS30216 prokMSA_id:087555 AY278881 Kineococcus sp. T2-15 prokMSA_id:012664 X77958 Kineococcus aurantiacus IFO 15268 . 2.30.1.9.3.018 OTU 1 seq prokMSA_id:012663 D17527 Kineococcus aurantiacus IFO 15268 . 2.30.1.9.3.019 OTU 1 seq prokMSA_id:041979 AF388895 firmicute clone GOBB3-CL171 2.30.1.9.3.020 OTU 1 seq prokMSA_id:052532 AJ232864 clone LRE25 2.30.1.9.3.021 OTU 1 seq prokMSA_id:060847 AY135923 clone SG2-125 2.30.1.9.3.022 OTU 1 seq prokMSA_id:061737 AJ416173 clone Urk0-14 2.30.1.9.3.023 OTU 1 seq prokMSA_id:075990 AY154645 earthworm cast clone c308 2.30.1.9.3.024 OTU 1 seq prokMSA_id:076713 AY154621 earthworm cast clone c270 2.30.1.9.3.025 OTU 1 seq prokMSA_id:077154 AY154595 earthworm cast clone c239 2.30.1.9.3.026 OTU 1 seq prokMSA_id:084686 AY242626 soil clone Tc135-219 2.30.1.9.3.027 OTU 1 seq prokMSA_id:086480 AY250880 actinobacterium clone FBP402 2.30.1.9.3.999 poor quality 22 seqs prokMSA_id:024511 AF078230 Grassland soil clone saf2_113 prokMSA_id:018450 AF128728 soil C058 prokMSA_id:056311 AF141402 actinomycete clone CR-FL20 prokMSA_id:018123 AF316656 Crater Lake CL120-52 prokMSA_id:042668 AF316677 Crater Lake CL120-145 prokMSA_id:029606 AF429127 clone CR99-24-17 prokMSA_id:066655 AF432243 Ellin416 prokMSA_id:057959 AF544292 actinobacterium isolate T13 prokMSA_id:029043 AJ244792 Gram-positive SOGA15 prokMSA_id:074603 AJ244793 Alpha SOGA16 prokMSA_id:040854 AJ244800 Gram-positive SOGA23 prokMSA_id:020708 AJ438276 actinobacterium clone S-95 prokMSA_id:062585 AJ504534 isolate P1CN76 prokMSA_id:056994 AJ518572 clone Qui4P2-27 prokMSA_id:056853 AJ518753 clone Sai4P3-85 prokMSA_id:051216 AY037734 earthworm cast clone C131 prokMSA_id:061381 AY043861 actinobacterium clone NMW3.208WL prokMSA_id:061340 AY043908 actinobacterium clone SMS9.83WL prokMSA_id:074245 AY144124 Kineosporia sp. prokMSA_id:076629 AY150952 actinobacterium clone uvi11 prokMSA_id:086626 AY242630 soil clone Tc128-213 prokMSA_id:087810 AY293510 clone FL12G08 2.30.1.9.4 THERMOCRISPUM_GROUP 4 seqs 2.30.1.9.4.001 OTU 1 seq prokMSA_id:012703 X79183 Thermocrispum agreste str. CHB77 DSM 44070 . 2.30.1.9.4.002 OTU 1 seq prokMSA_id:012701 X79184 Thermocrispum municipale str. MKD 35 DSM 44069 . 2.30.1.9.4.003 OTU 1 seq prokMSA_id:046191 AJ249326 Actinomyces sp. CCUG 41708 2.30.1.9.4.999 poor quality 1 seq prokMSA_id:012702 X79185 Thermocrispum municipale str. MKD 19. 2.30.1.10 PROPIONIBACTERIUM_GROUP 519 seqs 2.30.1.10.1 PRP.ACNES_SUBGROUP 91 seqs 2.30.1.10.1.002 OTU 2 seqs prokMSA_id:012706 AJ003055 Propionibacterium avidum DSM 4901 . prokMSA_id:012704 AJ003058 Propionibacterium propionicus DSM 43307 . 2.30.1.10.1.003 OTU 1 seq prokMSA_id:064594 AF467382 Nocardioides sp. clone 1519 2.30.1.10.1.004 OTU 1 seq prokMSA_id:078386 AY172308 clone 110 2.30.1.10.1.005 OTU 1 seq prokMSA_id:078766 AY189616 clone EarCan089 2.30.1.10.1.007 OTU 51 seqs prokMSA_id:017399 AB041617 Propionibacterium acnes isolate:#1447 prokMSA_id:026462 AB041618 Propionibacterium acnes isolate:#3004 and #7256 prokMSA_id:023665 AB042286 Propionibacterium acnes isolate:0432 prokMSA_id:026332 AB042287 Propionibacterium acnes isolate:#4584 prokMSA_id:032473 AB042288 Propionibacterium acnes ATCC6919 prokMSA_id:016987 AB042289 Propionibacterium acnes isolate:#7168 prokMSA_id:029154 AB042290 Propionibacterium acnes isolate:#7375 prokMSA_id:018812 AB042291 Propionibacterium acnes isolate:#8261 prokMSA_id:078295 AB074624 actinobacterium clone:APe2_6 prokMSA_id:037428 AB078819 Propionibacteriaceae str. K4 prokMSA_id:067360 AB084066 Propionibacterium sp. MSP09A prokMSA_id:075387 AB097215 Propionibacterium acnes complete prokMSA_id:086231 AB108477 Propionibacterium acnes isolate: #8644 prokMSA_id:084599 AB108478 Propionibacterium acnes isolate: #4860 prokMSA_id:085076 AB108479 Propionibacterium acnes isolate: #6119 prokMSA_id:082570 AB108480 Propionibacterium acnes isolate: #5317 prokMSA_id:085289 AB108481 Propionibacterium acnes isolate: #8800 prokMSA_id:085285 AB108482 Propionibacterium acnes isolate: #5255 prokMSA_id:083740 AB108483 Propionibacterium acnes isolate: #1003 prokMSA_id:083144 AB108484 Propionibacterium acnes isolate: #2929 prokMSA_id:012714 AF076032 Propionibacterium acnes. prokMSA_id:012709 AF145256 Propionibacterium acnes str. 63597. prokMSA_id:012710 AF146370 Propionibacterium acnes str. 76995. prokMSA_id:012713 AF154099 clone BPC009. prokMSA_id:012711 AF154832 Propionibacterium acnes str. MZ 169082. prokMSA_id:020375 AF290481 sheep mite Llangefni 35 prokMSA_id:037223 AF290482 sheep mite Llangefni 57 prokMSA_id:070065 AF419680 a2b011 prokMSA_id:052577 AF442045 firmicute clone CD1401C2 prokMSA_id:088061 AF443571 clone O-F-1 prokMSA_id:089974 AF443575 clone O-F-26 prokMSA_id:089757 AF443576 clone O-F-15 prokMSA_id:088922 AF443577 clone O-F-20 prokMSA_id:062481 AF513962 Propionibacterineae clone PH-B24N prokMSA_id:025486 AJ309523 Red Sea KT-2K12 prokMSA_id:043212 AJ309527 Red Sea KT-2K38 prokMSA_id:076441 AJ534680 actinobacterium clone S15A-MN99 prokMSA_id:094494 AJ583195 Actinobacterium clone S15B-MN4 prokMSA_id:018144 AY053491 AT425_EubE10 prokMSA_id:066602 AY096033 Propionibacterium sp. WJ6 prokMSA_id:076007 AY154504 earthworm intestine clone ew24 prokMSA_id:075115 AY154545 earthworm intestine clone lw29 prokMSA_id:079445 AY187905 clone M3 prokMSA_id:079089 AY189621 Propionibacterium sp. clone EarCan094 prokMSA_id:085057 AY242621 soil clone Tc134-108 prokMSA_id:088014 AY278876 Actinobacterium T2-1 prokMSA_id:093056 AY343975 Propionibacterium acnes B15 prokMSA_id:092471 AY354921 Propionibacterium sp. LG prokMSA_id:012707 M61903 Propionibacterium acnes DSM 1897 . prokMSA_id:050830 Y17821 Propionibacterium sp. V07/12348 prokMSA_id:012708 Z73375 clone Ep_T1.150. 2.30.1.10.1.999 poor quality 35 seqs prokMSA_id:042116 AB041321 ECS51 prokMSA_id:058683 AB080905 Propionibacterium sp. CJ82 prokMSA_id:072624 AF059764 HdEPI1 prokMSA_id:022802 AF128736 soil C089 prokMSA_id:074731 AF240478 atmospheric RM1A-12 prokMSA_id:053098 AF362021 Acidithiobacillus thiooxidans strain 8930P ; -23S intergenic spacer region complete ; and 23S prokMSA_id:074228 AF364931 clone clL1a prokMSA_id:026851 AF364950 clone clL61b prokMSA_id:046794 AF379034 clone EV20 prokMSA_id:040863 AF441982 firmicute clone CD12F11 prokMSA_id:037985 AF442029 firmicute clone CD14B4 prokMSA_id:024213 AF442034 firmicute clone CD14E12 prokMSA_id:077559 AF477818 actinomycete prokMSA_id:071408 AF544929 actinobacterium prokMSA_id:071418 AH007000 HdEPI1 and genes prokMSA_id:017416 AJ404530 Propionibacterium acnes clone PA prokMSA_id:051955 AJ405044 A18-K1 clone A18-K1 prokMSA_id:022067 AJ416652 actinomycete clone env.S052 prokMSA_id:032146 AJ416653 actinomycete clone env.S029 prokMSA_id:038241 AY006650 rumen prokMSA_id:066877 AY096134 clone M1-58 prokMSA_id:071435 AY145680 actinobacterium FL11F05 prokMSA_id:078640 AY189615 actinobacterium clone EarCan088 prokMSA_id:080417 AY193123 actinobacterium clone OBPB31 prokMSA_id:085546 AY256608 DGGE band B2-17 prokMSA_id:088001 AY278920 Propionibacterium sp. T6-2 prokMSA_id:097207 AY394637 Propionibacterium sp. clone W2-3 prokMSA_id:072300 M29560 M.chitae prokMSA_id:012716 U02904 Propionibacterium acnes ATCC 6919 . prokMSA_id:012705 U02905 Propionibacterium avidum ATCC 25577. prokMSA_id:012715 X53218 Propionibacterium acnes DSM 1897 . prokMSA_id:012717 X53228 Actinomyces israelii DSM 43020. prokMSA_id:012712 Y12288 Propionibacterium acnes str. LIP4. prokMSA_id:012718 Z69317 str. s13. prokMSA_id:034150 Z73442 species isolate Boom-3m-08 2.30.1.10.2 PRP.THOENII_SUBGROUP 13 seqs 2.30.1.10.2.001 OTU 2 seqs prokMSA_id:012724 AJ003057 Propionibacterium granulosum DSM 20700 . prokMSA_id:033816 AY053481 AT425_EubA8 2.30.1.10.2.002 OTU 2 seqs prokMSA_id:049248 AF234623 Propionibacterium microaerophilus prokMSA_id:093749 AY360222 Propionibacterium acidipropionici strain DH42 2.30.1.10.2.003 OTU 1 seq prokMSA_id:093935 AY363382 Propionibacterium sp. rennanqilfy60 2.30.1.10.2.999 poor quality 8 seqs prokMSA_id:023704 AF296651 Propionibacterium sp. 6D11 small subunit prokMSA_id:012722 L34614 combesii ATCC 25545 . prokMSA_id:012720 NONE Propionibacterium thoenii DSM 20276 . prokMSA_id:012725 U02906 Propionibacterium granulosum ATCC 25564. prokMSA_id:012719 X53219 Propionibacterium jensenii DSM 20535 . prokMSA_id:012721 X53220 Propionibacterium thoenii DSM 20276 . prokMSA_id:012723 X53221 Propionibacterium acidipropionici DSM 20272. prokMSA_id:044477 Z73456 species isolate Boom-3m-06 2.30.1.10.3 PRP.FREUDENREICHII_SUBGROUP 9 seqs 2.30.1.10.3.001 OTU 2 seqs prokMSA_id:012729 AJ009989 Propionibacterium freudenreichii subsp. globosum str. JS53. prokMSA_id:012727 Y10819 Propionibacterium freudenreichii subsp. shermanii str. E11.1 DSM 2.30.1.10.3.002 OTU 1 seq prokMSA_id:012728 D82046 Propionibacterium cyclohexanicum. 2.30.1.10.3.003 OTU 1 seq prokMSA_id:023815 AF225962 Propionibacterium sp. LCDC-98A072 2.30.1.10.3.004 OTU 1 seq prokMSA_id:067236 AF495454 clone T19 2.30.1.10.3.005 OTU 1 seq prokMSA_id:073295 AF287756 Propionibacterium sp. oral strain FMA5 2.30.1.10.3.999 poor quality 3 seqs prokMSA_id:012731 NONE Propionibacterium freudenreichii subsp. freudenreichii DSM 20271 prokMSA_id:012730 X53217 Propionibacterium freudenreichii subsp. freudenreichii DSM 20271 prokMSA_id:012726 X53217 Propionibacterium freudenreichii subsp. freudenreichii DSM 20271 2.30.1.10.4 PRP.PROPIONICUS 2 seqs 2.30.1.10.4.001 OTU 1 seq prokMSA_id:078651 AY174096 Propionibacterium propionicum 2.30.1.10.4.999 poor quality 1 seq prokMSA_id:012732 X53216 Propionibacterium propionicus DSM 43307 . 2.30.1.10.5 TSC.BENDIGOENSIS 5 seqs 2.30.1.10.5.001 OTU 1 seq prokMSA_id:012733 AF038504 Tessaracoccus bendigoensis str. Ben106 ACM 5119 . 2.30.1.10.5.002 OTU 2 seqs prokMSA_id:017374 AF285117 Propionibacterium propionicus prokMSA_id:018155 AJ315953 Propionibacterium propionicus strain DSM 43307T 2.30.1.10.5.003 OTU 1 seq prokMSA_id:019216 AF287757 Propionibacterium sp. oral clone BN085 2.30.1.10.5.999 poor quality 1 seq prokMSA_id:017783 U81764 clone vadinHA41 2.30.1.10.6 PRP.LYMPHOPHILUM_SUBGROUP 5 seqs 2.30.1.10.6.001 OTU 1 seq prokMSA_id:012734 AJ003056 Propionibacterium lymphophilum DSM 4903 . 2.30.1.10.6.999 poor quality 4 seqs prokMSA_id:048699 AB011303 clone: MUG11 prokMSA_id:019172 AB011304 clone: MUG12 prokMSA_id:052007 AF427951 clone 3C prokMSA_id:012735 U02907 Propionibacterium lymphophilum ATCC 27520. 2.30.1.10.7 LUT.JAPONICUS_SUBGROUP 6 seqs 2.30.1.10.7.001 OTU 1 seq prokMSA_id:012738 D21245 Luteococcus japonicus IFO 12422 . 2.30.1.10.7.002 OTU 2 seqs prokMSA_id:012736 D85487 Luteococcus japonicus IFO 12422 . prokMSA_id:012737 Z78208 Luteococcus japonicus DSM 10546 . 2.30.1.10.7.003 OTU 1 seq prokMSA_id:047148 AJ132334 Luteococcus sp. CCUG38120 2.30.1.10.7.004 OTU 1 seq prokMSA_id:077680 AJ416758 Luteococcus sanguinus strain CCUG 33897T 2.30.1.10.7.005 OTU 1 seq prokMSA_id:088371 AY221602 soil clone HN1-55 2.30.1.10.8 PRF.INNOCUA 1 seq 2.30.1.10.8.999 poor quality 1 seq prokMSA_id:012739 S93388 Propioniferax innocua NCTC 11082 . 2.30.1.10.9 MCL.PHOSPHOVORUS_SUBGROUP 62 seqs 2.30.1.10.9.001 OTU 6 seqs prokMSA_id:019175 AB078820 Actinobacterium K5 prokMSA_id:023881 AB078835 Actinobacterium W1 prokMSA_id:047074 AB078858 Actinobacterium Wd prokMSA_id:049459 AB078859 Actinobacterium Wf prokMSA_id:012753 AJ229243 str. VeSm15. prokMSA_id:082323 AY211075 actinobacterium clone VC20 2.30.1.10.9.002 OTU 1 seq prokMSA_id:012752 AJ224541 str. clone koll13. 2.30.1.10.9.003 OTU 1 seq prokMSA_id:012751 AB012607 str. Lg2. 2.30.1.10.9.004 OTU 5 seqs prokMSA_id:077575 AJ535742 Microlunatus sp. clone OF27 prokMSA_id:085727 AJ555196 Actinobacteridae clone ACF3 prokMSA_id:012749 D26169 Microlunatus phosphovorus str. NM-1. prokMSA_id:012750 D26170 Microlunatus phosphovorus str. NM-2. prokMSA_id:012745 Z78207 Microlunatus phosphovorus DSM 10555 . 2.30.1.10.9.005 OTU 1 seq prokMSA_id:012746 AJ009505 clone SJA-181. 2.30.1.10.9.006 OTU 2 seqs prokMSA_id:012744 D50065 Microlunatus sp. str. Y-73. prokMSA_id:071877 D50065 Microlunatus sp. 2.30.1.10.9.007 OTU 2 seqs prokMSA_id:012743 AF084529 Friedmanniella capsulatus str. Ben 108; J47 ACM 5120. prokMSA_id:047043 AJ132943 Friedmanniella sp. EL-17a 2.30.1.10.9.008 OTU 3 seqs prokMSA_id:012742 AF062535 Friedmanniella spumicola str. Ben 107 ACM 5121. prokMSA_id:068737 AF479364 Glacial ice SB12K-2-7 prokMSA_id:012741 Z78206 Friedmanniella antarctica str. AA-1042 DSM 11053 . 2.30.1.10.9.009 OTU 1 seq prokMSA_id:028529 AB031649 TIHP368-34 2.30.1.10.9.010 OTU 1 seq prokMSA_id:031964 AB078817 Actinobacterium K2 2.30.1.10.9.011 OTU 1 seq prokMSA_id:041906 AF445119 clone Tc57 2.30.1.10.9.012 OTU 1 seq prokMSA_id:048003 AF281118 sp. sbr-gs28 2.30.1.10.9.013 OTU 1 seq prokMSA_id:075130 AY154636 earthworm cast clone c291 2.30.1.10.9.014 OTU 1 seq prokMSA_id:078333 AB089071 Actinobacteridae clone:Rs-Q42 2.30.1.10.9.015 OTU 1 seq prokMSA_id:089789 AF491902 Actinomycete symbiont 6 of Acromyrmex octospinosus 2.30.1.10.9.999 poor quality 34 seqs prokMSA_id:024705 AF234043 #0324-1C20 prokMSA_id:036571 AF268847 glc4 prokMSA_id:026410 AF268849 glc6 prokMSA_id:074739 AF268854 glc11 prokMSA_id:025997 AF268864 glc21 prokMSA_id:039506 AF268865 glc22 prokMSA_id:025875 AF268867 glc24 prokMSA_id:074765 AF281092 sp. sbr-gs2 prokMSA_id:050068 AF281103 sp. sbr-gs13 prokMSA_id:031131 AF281109 sp. sbr-gs19 prokMSA_id:039107 AF281113 sp. sbr-gs23 prokMSA_id:068966 AF392745 clone LEC3 prokMSA_id:076739 AF432629 clone S52.30PG prokMSA_id:089518 AF432645 clone C34.09SM prokMSA_id:050852 AF447146 clone TDC-C3 prokMSA_id:090429 AF491903 Actinomycete symbiont 7 of Acromyrmex octospinosus prokMSA_id:065812 AF507521 soil clone S084 prokMSA_id:062308 AY124405 actinobacterium clone CSb12 prokMSA_id:069674 AY143787 Propionibacterineae clone Vr26 prokMSA_id:076199 AY150942 actinobacterium clone uv83 prokMSA_id:077153 AY150951 actinobacterium clone uvi12 prokMSA_id:075107 AY150956 clone uvi15 prokMSA_id:076307 AY150966 actinobacterium clone uvi33 prokMSA_id:079568 AY186832 actinobacterium clone uv83 prokMSA_id:079405 AY186841 actinobacterium clone uvi12 prokMSA_id:079407 AY186846 clone uvi15 prokMSA_id:079491 AY186856 actinobacterium clone uvi33 prokMSA_id:079215 AY186870 clone uvel24 prokMSA_id:079122 AY186873 clone uvel37 prokMSA_id:079399 AY186879 clone uvel38b prokMSA_id:084075 AY242636 soil clone Tc130-28 prokMSA_id:012748 D32041 Microlunatus phosphovorus str. UMT-1. prokMSA_id:012747 U68642 clone P6. prokMSA_id:012740 Z29531 Tropheryma whippelii. 2.30.1.10.10 ARMB.FASTIDIOSUM_SUBGROUP 30 seqs 2.30.1.10.10.003 OTU 5 seqs prokMSA_id:012760 AF005021 Aeromicrobium erythreum NRRL B-3381 . prokMSA_id:039886 AF005022 Aeromicrobium fastidiosum prokMSA_id:012758 X76178 Nocardioides sp. NCFB 3005. prokMSA_id:012757 X76179 Nocardioides sp. NCFB 3007. prokMSA_id:012756 Z78209 Aeromicrobium fastidiosum DSM 10552 . 2.30.1.10.10.004 OTU 1 seq prokMSA_id:026274 AJ007645 clone 404-2 2.30.1.10.10.005 OTU 2 seqs prokMSA_id:043363 AJ299232 Nocardioides sp. 2.14 strain 2.14 prokMSA_id:037432 AJ299233 Nocardioides sp. 2.20 strain 2.20 2.30.1.10.10.006 OTU 2 seqs prokMSA_id:061957 AJ244657 Nocardioides sp. V4.BE.17 prokMSA_id:097703 AY423718 Nocardioides sp. JC2055 2.30.1.10.10.007 OTU 1 seq prokMSA_id:065576 AY095384 yard-trimming-compost clone S-12 2.30.1.10.10.008 OTU 1 seq prokMSA_id:084596 AY166703 Aeromicrobium marinum 2.30.1.10.10.999 poor quality 18 seqs prokMSA_id:027865 AF078266 Grassland soil clone saf2_418 prokMSA_id:025776 AF078342 Grassland soil clone sl1_203 prokMSA_id:041427 AF078344 Grassland soil clone sl1_206 prokMSA_id:045137 AF078354 Grassland soil clone sl1_217 prokMSA_id:034955 AF379022 clone EV7 prokMSA_id:064585 AF467394 Nocardioides sp. clone 1516 prokMSA_id:090605 AF491901 Actinomycete symbiont 5 of Acromyrmex octospinosus prokMSA_id:057940 AF544320 actinobacterium isolate M20 prokMSA_id:035573 AJ132328 actinomycete clone DDGE band B prokMSA_id:060129 AJ427636 actinomycete clone ACT-A2 prokMSA_id:062592 AJ504527 isolate P1CN66 prokMSA_id:027281 AY034839 CA10 prokMSA_id:022112 AY034840 CA11 prokMSA_id:043815 AY037694 earthworm cast clone C041 prokMSA_id:034666 AY039476 Soil NS15 prokMSA_id:012759 M37200 Aeromicrobium erythreum NRRL B-3381 . prokMSA_id:012755 X53189 Aeromicrobium fastidiosum NCIMB 12713 . prokMSA_id:012754 X76862 Aeromicrobium fastidiosum NCIMB 12713 . 2.30.1.10.11 NCR.ALBUS_SUBGROUP 237 seqs 2.30.1.10.11.001 OTU 1 seq prokMSA_id:012799 U27856 clone FJ21A. 2.30.1.10.11.005 OTU 26 seqs prokMSA_id:012789 AF004988 Nocardioides albus KCTC 9186 . prokMSA_id:024003 AF004989 Nocardioides albus prokMSA_id:074703 AF004990 Nocardioides albus prokMSA_id:035182 AF004991 Nocardioides albus prokMSA_id:027416 AF004992 Nocardioides albus prokMSA_id:029505 AF004993 Nocardioides albus prokMSA_id:074487 AF004994 Nocardioides albus prokMSA_id:034255 AF004995 Nocardioides albus prokMSA_id:026246 AF004996 Nocardioides albus prokMSA_id:035067 AF004997 Nocardioides albus prokMSA_id:038858 AF004998 Nocardioides albus prokMSA_id:031018 AF004999 Nocardioides albus prokMSA_id:038492 AF005000 Nocardioides albus prokMSA_id:045925 AF005001 Nocardioides albus prokMSA_id:043015 AF005002 Nocardioides albus prokMSA_id:044488 AF005003 Nocardioides albus prokMSA_id:025935 AF005004 Nocardioides albus prokMSA_id:048672 AF005005 Nocardioides albus prokMSA_id:023823 AF005007 Nocardioides luteus prokMSA_id:045362 AF005014 Nocardioides flavus prokMSA_id:044064 AF005015 Nocardioides flavus prokMSA_id:046696 AF005016 Nocardioides fulvus prokMSA_id:077241 AY148082 Nocardioides sp. EN47 prokMSA_id:012793 X86617 Nocardioides sp. str. 15-59. prokMSA_id:012794 X86618 Nocardioides sp. str. 30-71. prokMSA_id:012796 X86620 Nocardioides sp. str. 80-83. 2.30.1.10.11.006 OTU 2 seqs prokMSA_id:012761 AF005008 Nocardioides plantarum str. Grainger J70 NCIMB 12834 . prokMSA_id:012788 Z78211 Nocardioides plantarum DSM 11054 . 2.30.1.10.11.011 OTU 17 seqs prokMSA_id:077979 AB074621 actinobacterium clone:APe4_47 prokMSA_id:063875 AB087721 Nocardioides sp. H-1 prokMSA_id:070751 AB087722 Nocardioides sp. NSA1-1 prokMSA_id:063873 AB087723 Nocardioides sp. NSA1-2 prokMSA_id:063872 AB087724 Nocardioides sp. A-3 prokMSA_id:063871 AB087725 Nocardioides sp. H-2 prokMSA_id:012780 AF005009 Nocardioides simplex KCTC 9106 . prokMSA_id:032654 AF005010 Nocardioides simplex prokMSA_id:029872 AF005011 Nocardioides simplex prokMSA_id:047949 AF005012 Nocardioides simplex prokMSA_id:033375 AF005013 Nocardioides simplex prokMSA_id:012782 AF005024 Nocardioides nitrophenolicus str. NSP41. prokMSA_id:077975 AJ535740 Nocardioides sp. clone CF1 prokMSA_id:082319 AJ549286 Nocardioides sp. NS/27 strain NS/27 prokMSA_id:096649 AY423719 Nocardioides sp. JC2056 prokMSA_id:012798 M37693 Nocardioides simplex ATCC 6946 . prokMSA_id:012769 Z78212 Nocardioides simplex DSM 20130 . 2.30.1.10.11.012 OTU 3 seqs prokMSA_id:012776 AJ009714 isolate K44 prokMSA_id:075390 AY027587 Nocardioides sp. 4P1-A prokMSA_id:078438 AY177374 Phenanthrene-degrading L31B 2.30.1.10.11.013 OTU 1 seq prokMSA_id:012770 U27857 clone Nb. 2.30.1.10.11.014 OTU 5 seqs prokMSA_id:021031 AF465213 Nocardioides sp. JS884 prokMSA_id:060763 AF498652 Nocardioides sp. JS614 prokMSA_id:060989 AF529063 Nocardioides aquiterrae strain GW-9 prokMSA_id:055932 AY145529 Nocardioides sp. GP-1 prokMSA_id:012768 U61298 Nocardioides sp. str. OS4. 2.30.1.10.11.015 OTU 2 seqs prokMSA_id:012762 X90830 Nocardioides sp. str. EL-17 lawson. prokMSA_id:012763 X94145 Nocardioides sp. 2.30.1.10.11.016 OTU 4 seqs prokMSA_id:016538 AF210769 Nocardioides sp. CF8 prokMSA_id:052210 AJ252592 Rhizosphere soil isolate RSI-25 prokMSA_id:068678 AJ438186 1152 bp prokMSA_id:096050 AY378258 Permafrost DT-IIK26 2.30.1.10.11.017 OTU 9 seqs prokMSA_id:045463 AB064679 clone:NK201 prokMSA_id:021254 AB064681 clone:NK203 prokMSA_id:043337 AB064684 clone:NK206 prokMSA_id:025295 AB064689 clone:NK212 prokMSA_id:022309 AB064691 clone:NK214 prokMSA_id:025250 AB064695 clone:NK219 prokMSA_id:032843 AB064696 clone:NK221 prokMSA_id:045658 AB064706 clone:NK235 prokMSA_id:052738 AB064707 clone:NK236 2.30.1.10.11.018 OTU 1 seq prokMSA_id:055698 AY129809 Nocardioides sp. clone GCPF41 2.30.1.10.11.021 OTU 7 seqs prokMSA_id:055921 AJ244652 Nocardioides sp. V4.MO.04 prokMSA_id:061784 AJ244653 Nocardioides sp. V4.BE.05 prokMSA_id:061956 AJ244654 Nocardioides sp. V4.BE.54 prokMSA_id:061958 AJ244655 Nocardioides sp. V4.BO.15 prokMSA_id:073212 AJ244656 Nocardioides sp. V4.ME.19 prokMSA_id:095357 AY394879 Nocardioides sp. EPR 26 W prokMSA_id:098424 AY394881 Nocardioides sp. EPR 28 W 2.30.1.10.11.022 OTU 3 seqs prokMSA_id:034725 AJ316318 Nocardioides sp. LMG 20237 strain LMG 20237 prokMSA_id:084145 AJ555206 Actinobacteridae clone ACF41 prokMSA_id:084786 AJ555223 actinomycete clone AOF20 2.30.1.10.11.023 OTU 2 seqs prokMSA_id:044269 AF253509 Nocardioides sp. C157 prokMSA_id:084238 AF537327 Nocardioides sp. SP12 2.30.1.10.11.024 OTU 1 seq prokMSA_id:051010 AF279792 Nocardioides sp. SAC-4 2.30.1.10.11.025 OTU 1 seq prokMSA_id:052736 AF253510 Nocardioides sp. C190 2.30.1.10.11.026 OTU 1 seq prokMSA_id:060272 AY129813 Nocardioides sp. clone GCPF27 2.30.1.10.11.027 OTU 1 seq prokMSA_id:060279 AY129808 Nocardioides sp. clone GCPF40 2.30.1.10.11.028 OTU 1 seq prokMSA_id:060284 AY129798 Nocardioides sp. clone GCPF29 2.30.1.10.11.029 OTU 1 seq prokMSA_id:060294 AY129785 actinobacterium clone GCPF9 2.30.1.10.11.030 OTU 1 seq prokMSA_id:060300 AY129780 Nocardioides sp. clone GCPF3 2.30.1.10.11.031 OTU 1 seq prokMSA_id:061952 AJ244658 Nocardioides sp. V4.BO.42 2.30.1.10.11.032 OTU 1 seq prokMSA_id:065555 AY095406 yard-trimming-compost clone S-35 2.30.1.10.11.033 OTU 1 seq prokMSA_id:074673 AY145530 Nocardioides sp. GP-2 2.30.1.10.11.034 OTU 1 seq prokMSA_id:074973 AY154527 earthworm intestine clone ew65 2.30.1.10.11.035 OTU 1 seq prokMSA_id:074983 AY154602 earthworm cast clone c247 2.30.1.10.11.036 OTU 1 seq prokMSA_id:075210 AY154643 earthworm cast clone c306 2.30.1.10.11.037 OTU 1 seq prokMSA_id:075273 AY154604 earthworm cast clone c250 2.30.1.10.11.038 OTU 1 seq prokMSA_id:075567 AY154519 earthworm intestine clone ew52 2.30.1.10.11.039 OTU 1 seq prokMSA_id:075707 AY154619 earthworm cast clone c268 2.30.1.10.11.040 OTU 1 seq prokMSA_id:075726 AY154591 earthworm cast clone c235 2.30.1.10.11.041 OTU 1 seq prokMSA_id:076263 AY154593 earthworm cast clone c237 2.30.1.10.11.042 OTU 1 seq prokMSA_id:076264 AY154561 earthworm intestine clone lw67 2.30.1.10.11.043 OTU 1 seq prokMSA_id:076388 AY154512 earthworm intestine clone ew35 2.30.1.10.11.044 OTU 1 seq prokMSA_id:076433 AY154556 earthworm intestine clone lw61 2.30.1.10.11.045 OTU 1 seq prokMSA_id:076665 AY154521 earthworm intestine clone ew57 2.30.1.10.11.046 OTU 1 seq prokMSA_id:076779 AY154613 earthworm cast clone c260 2.30.1.10.11.047 OTU 2 seqs prokMSA_id:076816 AY154494 earthworm intestine clone wi83 prokMSA_id:076869 AY154597 earthworm cast clone c241 2.30.1.10.11.048 OTU 1 seq prokMSA_id:076827 AY154581 earthworm cast clone c224 2.30.1.10.11.049 OTU 1 seq prokMSA_id:077655 AJ535738 Nocardioides sp. clone CF48 2.30.1.10.11.050 OTU 1 seq prokMSA_id:077714 AY144584 soil clone Dpcom43 2.30.1.10.11.051 OTU 1 seq prokMSA_id:078330 AJ535743 Nocardioides sp. clone OF32 2.30.1.10.11.052 OTU 1 seq prokMSA_id:078532 AY159796 Nocardioides sp. B33 2.30.1.10.11.053 OTU 1 seq prokMSA_id:082839 AJ555221 actinomycete clone AOF13 2.30.1.10.11.054 OTU 1 seq prokMSA_id:083139 AJ555227 actinomycete clone AOF34 2.30.1.10.11.055 OTU 1 seq prokMSA_id:083955 AJ555199 Actinobacteridae clone ACF6 2.30.1.10.11.057 OTU 9 seqs prokMSA_id:074690 AF005006 Nocardioides jensenii prokMSA_id:085335 AJ555194 Actinobacteridae clone ACF1 prokMSA_id:085500 AJ555195 Actinobacteridae clone ACF2 prokMSA_id:084062 AJ555198 Actinobacteridae clone ACF5 prokMSA_id:086457 AJ555201 Actinobacteridae clone ACF21 prokMSA_id:086669 AJ555204 Actinobacteridae clone ACF30 prokMSA_id:012787 D87974 Nocardioides sp. str. KP7. prokMSA_id:032247 Y18629 Marmoricola aurantiacus prokMSA_id:012785 Z78210 Nocardioides jensenii DSM 20641 . 2.30.1.10.11.058 OTU 1 seq prokMSA_id:085493 AJ555203 Actinobacteridae clone ACF23 2.30.1.10.11.059 OTU 1 seq prokMSA_id:087587 AY278896 Nocardioides sp. T2-31 2.30.1.10.11.060 OTU 1 seq prokMSA_id:089986 AY327193 clone ZB135 2.30.1.10.11.999 poor quality 109 seqs prokMSA_id:074508 AB054830 Nocardioides sp. 1185c prokMSA_id:074802 AB054831 Nocardioides sp. 1263b prokMSA_id:074678 AB054832 Nocardioides sp. 1265b prokMSA_id:074859 AB054833 Nocardioides sp. 1272 prokMSA_id:041316 AB054834 Pimelobacter simplex prokMSA_id:046767 AB054835 Pimelobacter simplex prokMSA_id:043549 AB054899 Nocardioides sp. 1279b prokMSA_id:074797 AB054925 Nocardioides sp. 1713 prokMSA_id:029816 AB055426 Nocardioides sp. 1169 prokMSA_id:048410 AB064705 clone:NK233 prokMSA_id:083499 AB097967 Actinobacterium ANRS3-1 prokMSA_id:012797 AF064977 Pseudonocardia 'CIBE A5' str. CIBE A5. prokMSA_id:012771 AF078245 unnamed organism. prokMSA_id:012781 AF078287 unnamed organism. prokMSA_id:012790 AF078347 unnamed organism. prokMSA_id:012784 AF078370 unnamed organism. prokMSA_id:041020 AF078383 Grassland soil clone sl2_523 prokMSA_id:012773 AF078407 unnamed organism. prokMSA_id:012786 AF078410 unnamed organism. prokMSA_id:012772 AF078419 unnamed organism. prokMSA_id:012792 AF078425 unnamed organism. prokMSA_id:012791 AF078435 unnamed organism. prokMSA_id:039223 AF083588 Amazonian soil P18 prokMSA_id:012777 AF083590 str. P19b. prokMSA_id:037057 AF143752 actinomycete clone A9 prokMSA_id:048783 AF143756 actinomycete clone A13 prokMSA_id:040674 AF143758 actinomycete clone A16 prokMSA_id:074402 AF143759 actinomycete clone A18 prokMSA_id:019899 AF143760 actinomycete clone A19 prokMSA_id:028800 AF220534 prokMSA_id:042660 AF240480 atmospheric RM2B-6 prokMSA_id:041493 AF297698 Nocardioides albus prokMSA_id:054551 AF423243 soil clone 255-2 prokMSA_id:047663 AF432344 firmicute 4%N-26d-91 prokMSA_id:067046 AF499423 clone BL-80 prokMSA_id:065345 AF513607 clone Dpcom01 prokMSA_id:065348 AF513609 clone Dpcom03 prokMSA_id:065347 AF513611 clone Dpcom05 prokMSA_id:065349 AF513613 clone Dpcom07 prokMSA_id:065340 AF513615 clone Dpcom09 prokMSA_id:065341 AF513618 clone Dpcom11 prokMSA_id:065337 AF514790 clone Dpcom14 prokMSA_id:065221 AF515616 clone Dpcom16 prokMSA_id:065218 AF515618 clone Dpcom18 prokMSA_id:065217 AF515619 clone Dpcom19 prokMSA_id:055552 AF521024 clone Dpcom20 prokMSA_id:055984 AF521028 clone Dpcom24 prokMSA_id:064347 AF521030 clone Dpcom26 prokMSA_id:064344 AF521032 clone Dpcom28 prokMSA_id:055817 AF521034 clone Dpcom30 prokMSA_id:064343 AF521035 clone Dpcom32 prokMSA_id:073935 AF530932 Actinobacterium sj74 prokMSA_id:012775 AJ009713 str. K103. prokMSA_id:012778 AJ229240 str. PB90-4. prokMSA_id:061954 AJ244651 Nocardioides sp. V4.BO.33 prokMSA_id:049931 AJ252593 Rhizosphere soil isolate RSI-26 prokMSA_id:017376 AJ278483 Actinomyces sp. isolate AM4 prokMSA_id:069960 AJ289954 400-141l prokMSA_id:045588 AJ298580 Hbr-K11 prokMSA_id:031558 AJ344526 Nocardioides sp. strain SFLA20 prokMSA_id:044733 AJ344527 Nocardioides sp. strain SFLA21 prokMSA_id:037467 AJ404528 US20 prokMSA_id:060119 AJ427643 actinomycete clone ACT-B2 prokMSA_id:060125 AJ427644 actinomycete clone ACT-B3 prokMSA_id:060120 AJ427646 actinomycete clone ACT-B5 prokMSA_id:060118 AJ427648 actinomycete clone ACT-B7 prokMSA_id:060115 AJ427649 actinomycete clone ACT-B8 prokMSA_id:060116 AJ427650 actinomycete clone ACT-B9 prokMSA_id:062623 AJ504488 isolate P1CN17 prokMSA_id:062622 AJ504491 isolate P1CN20 prokMSA_id:062619 AJ504494 isolate P1CN24 prokMSA_id:056160 AJ504542 isolate P1CN87 prokMSA_id:062577 AJ504544 isolate P1CN89 prokMSA_id:062578 AJ504545 isolate P1CN91 prokMSA_id:062545 AJ504581 isolate P2CN32 prokMSA_id:071653 AJ504593 isolate P2CN52 prokMSA_id:078093 AJ535736 Bacillus sp. clone CF29 prokMSA_id:093541 AJ582587 clone M20-09 prokMSA_id:016316 AY037629 soil clone S116 prokMSA_id:026541 AY037634 soil clone S123 prokMSA_id:042787 AY039450 Earthworm burrow B34M1 prokMSA_id:053456 AY039470 Earthworm cast NC7 prokMSA_id:018428 AY039477 Soil NS5 prokMSA_id:040898 AY039492 Soil S58M2 prokMSA_id:047793 AY039498 Soil S72D1 prokMSA_id:061497 AY043722 actinobacterium clone NOW2.PWL prokMSA_id:062319 AY124392 actinobacterium clone ASb06 prokMSA_id:062306 AY124408 actinobacterium clone CSc04 prokMSA_id:055645 AY124412 actinobacterium clone CSd06 prokMSA_id:074054 AY143701 actinobacterium clone Lu16 prokMSA_id:069176 AY143713 Marmoricola sp. clone Lu77 prokMSA_id:056376 AY143750 Nocardioides sp. clone Lur3 prokMSA_id:075425 AY154580 earthworm cast clone c223 prokMSA_id:077015 AY154611 earthworm cast clone c258 prokMSA_id:085370 AY251205 actinobacterium clone 1B_5 prokMSA_id:088106 AY317113 Actinobacterium BAL60 prokMSA_id:091881 AY345502 clone W4-B24 prokMSA_id:093299 AY364071 actinobacterium clone cRI36d prokMSA_id:096822 AY378209 Glacial ice ML-20 prokMSA_id:095318 AY395156 actinobacterium clone E11ST prokMSA_id:012800 D84609 unnamed organism. prokMSA_id:012774 D84616 str. S23405. prokMSA_id:012766 U09779 clone JAP416. prokMSA_id:012779 X53211 Nocardioides albus DSM 43109 . prokMSA_id:012765 X53212 Nocardioides luteus NCIMB 11455 . prokMSA_id:012764 X53213 Nocardioides simplex NCIMB 8929 . prokMSA_id:012767 X53214 Nocardioides jensenii DSM 20641 . prokMSA_id:012783 X69973 Nocardioides plantarum str. Grainger J70 NCIMB 12834 . prokMSA_id:012795 X86619 Nocardioides sp. str. 80-80. 2.30.1.10.12 KRIBBELLA_SUBGROUP 58 seqs 2.30.1.10.12.001 OTU 1 seq prokMSA_id:012805 AF142934 clone PENDANT-22. 2.30.1.10.12.002 OTU 11 seqs prokMSA_id:012801 AF005017 Kribbella flavida IFO 14399 . prokMSA_id:012804 AF005020 Kribbella sandramycini ATCC 39419 . prokMSA_id:045801 AF131632 Nocardioidaceae str. IM-7029 prokMSA_id:033303 AF131633 Nocardioidaceae str. IM-7091 prokMSA_id:044933 AF131634 Nocardioidaceae str. IM-7757 prokMSA_id:048151 AF131635 Nocardioidaceae str. IM-7770 prokMSA_id:065647 AF507746 soil clone S198 prokMSA_id:068399 AY082061 Nocardioides sp. YIM30006 prokMSA_id:055745 AY082062 Nocardioides sp. YIM31075 prokMSA_id:055832 AY082063 Nocardioides sp. YIM31530 prokMSA_id:012803 Y09159 Hongia koreensis str. LM 161T =IMSNU 50530T. 2.30.1.10.12.003 OTU 3 seqs prokMSA_id:025755 AF131636 Nocardioidaceae str. IM-7744 prokMSA_id:074789 AF131637 Nocardioidaceae str. IM-7747 prokMSA_id:045777 AF237815 Actinosingapura polymorpha 2.30.1.10.12.004 OTU 1 seq prokMSA_id:030134 AF423273 soil clone 528-1 2.30.1.10.12.999 poor quality 42 seqs prokMSA_id:095618 AB122806 Hongia sp. 384C06 prokMSA_id:096718 AB122843 Hongia sp. 384G08 prokMSA_id:096032 AB123100 Hongia sp. 415A10 prokMSA_id:095697 AB123579 Hongia sp. 303A12 prokMSA_id:097966 AB123586 Hongia sp. 303B07 prokMSA_id:095822 AB123589 Hongia sp. 303B10 prokMSA_id:096430 AB123675 Hongia sp. 306C01 prokMSA_id:097421 AB123691 Hongia sp. 306D07 prokMSA_id:098030 AB123856 Hongia sp. 313C12 prokMSA_id:097182 AB123860 Hongia sp. 313D04 prokMSA_id:096144 AB123862 Hongia sp. 313D07 prokMSA_id:096789 AB123871 Hongia sp. 313E05 prokMSA_id:098249 AB123872 Hongia sp. 313E07 prokMSA_id:098230 AB124198 Hongia sp. 331F09 prokMSA_id:096186 AB124201 Hongia sp. 331G01 prokMSA_id:095262 AB124346 Hongia sp. 337D12 prokMSA_id:097971 AB124350 Hongia sp. 337E05 prokMSA_id:095771 AB124354 Hongia sp. 337E09 prokMSA_id:098732 AB124364 Hongia sp. 337F07 prokMSA_id:097439 AB124389 Hongia sp. 340A03 prokMSA_id:096931 AB124391 Hongia sp. 340A05 prokMSA_id:096690 AB124397 Hongia sp. 340A11 prokMSA_id:098197 AB124455 Hongia sp. 340G06 prokMSA_id:043774 AF256049 actinomycete GT34-1b prokMSA_id:059390 AF428796 clone CR98-5-66 prokMSA_id:064351 AF521026 clone Dpcom22 prokMSA_id:064345 AF521031 clone Dpcom27 prokMSA_id:064342 AF521033 clone Dpcom29 prokMSA_id:058261 AF544641 actinobacterium DGGE gel band H11-2 prokMSA_id:060117 AJ427647 actinomycete clone ACT-B6 prokMSA_id:059984 AJ507509 clone VE5-98 prokMSA_id:059980 AJ507512 clone VE92-99 prokMSA_id:082354 AJ550435 clone AS 51 prokMSA_id:069368 AY143711 Nocardioides sp. clone Lu67 prokMSA_id:056692 AY143738 Nocardioides sp. clone V39 prokMSA_id:072644 AY143739 Nocardioides sp. clone V46 prokMSA_id:075227 AY150924 actinobacterium clone uv9 prokMSA_id:075973 AY150971 actinobacterium clone uvi34 prokMSA_id:079485 AY186814 actinobacterium clone uv9 prokMSA_id:079378 AY186861 actinobacterium clone uvi34 prokMSA_id:012802 Z77626 str. 2-400 C2.16. prokMSA_id:031872 Z77638 2-400 C2.6 2.30.1.11 MICROMONOSPORA_GROUP 549 seqs 2.30.1.11.1 ENVIRONMENTAL_CLONE_SMK3 1 seq 2.30.1.11.1.999 poor quality 1 seq prokMSA_id:012806 X78647 clone SMK3. 2.30.1.11.2 PLM.TEREVASA_SUBGROUP 4 seqs 2.30.1.11.2.001 OTU 4 seqs prokMSA_id:012809 D86946 Pilimelia terevasa IFO 15964. prokMSA_id:072263 D86946 Pilimelia terevasa strain IFO15964 prokMSA_id:012807 X93189 Pilimelia anulata DSM 43039 . prokMSA_id:012808 X93190 Pilimelia terevasa DSM 43040 . 2.30.1.11.3 APL.PHILIPPINENSIS_SUBGROUP 53 seqs 2.30.1.11.3.005 OTU 22 seqs prokMSA_id:012817 AB013495 Actinoplanes capillaceus str. K95-5561. prokMSA_id:036425 AB036995 Actinoplanes campanulatus prokMSA_id:050704 AB037006 Actinoplanes lobatus prokMSA_id:039135 AB047489 Actinoplanes arizonaensis prokMSA_id:026671 AB047500 Actinoplanes purpeobrunneus prokMSA_id:024378 AB047505 Actinoplanes sarveparensis prokMSA_id:018388 AB047509 Actinoplanes sp. IFO 14264 prokMSA_id:036612 AB047510 Actinoplanes sp. IFO 14265 prokMSA_id:021601 AF131335 Actinoplanes sp. IM-1126 prokMSA_id:018017 AF131336 Actinoplanes sp. IM-1127 prokMSA_id:046909 AF131339 Actinoplanes sp. IM-2109 prokMSA_id:018780 AF131340 Actinoplanes sp. IM-2563 prokMSA_id:022731 AF131341 Actinoplanes sp. IM-2601 prokMSA_id:045057 AF131346 Actinoplanes sp. IM-3000 prokMSA_id:043385 AF131349 Actinoplanes sp. IM-3234 prokMSA_id:028089 AJ277581 Actinoplanes purpeobrunneus strain IMSNU 22130 prokMSA_id:084117 AJ488567 Actinoplanes sp. strain 96 prokMSA_id:071458 D85474 Actinoplanes philippinensis strain IFO13878 prokMSA_id:012811 D85474 Actinoplanes philippinensis IFO 13878 . prokMSA_id:012815 U58525 Actinoplanes philippinensis ATCC 12427 . prokMSA_id:012816 U58526 Actinoplanes auranticolor IFO 12245 . prokMSA_id:012810 X93187 Actinoplanes philippinensis DSM 43019 . 2.30.1.11.3.007 OTU 1 seq prokMSA_id:026880 AF469389 clone 33-PA134B99 2.30.1.11.3.009 OTU 13 seqs prokMSA_id:012813 AF001652 clone OCS155. prokMSA_id:053290 AY033296 actinobacterium MB11A03 and 23S genes prokMSA_id:054456 AY033302 actinobacterium MB11C06 and 23S genes prokMSA_id:092794 AY354854 actinobacterium clone PLY-P1-35 prokMSA_id:093025 AY354855 actinobacterium clone PLY-P1-83 prokMSA_id:092959 AY354856 actinobacterium clone PLY-P1-85 prokMSA_id:092713 AY354857 actinobacterium clone PLY-P1-111 prokMSA_id:092074 AY354858 actinobacterium clone PLY-P3-65 prokMSA_id:092145 AY354859 actinobacterium clone PLY-P1-11 prokMSA_id:092033 AY354860 actinobacterium clone PLY-P1-96 prokMSA_id:093096 AY354861 actinobacterium clone PLY-P3-53 prokMSA_id:092342 AY354862 actinobacterium clone PLY-P3-97 prokMSA_id:012812 U70710 clone OM1. 2.30.1.11.3.010 OTU 1 seq prokMSA_id:060632 AF406543 firmicute clone AEGEAN_163 2.30.1.11.3.011 OTU 1 seq prokMSA_id:060634 AF406542 firmicute clone AEGEAN_193 2.30.1.11.3.012 OTU 1 seq prokMSA_id:072061 AF406530 gamma clone AEGEAN_195 2.30.1.11.3.013 OTU 1 seq prokMSA_id:080695 AY220717 Gram-positive clone WCPAP13 2.30.1.11.3.999 poor quality 13 seqs prokMSA_id:095882 AB123424 Actinoplanes sp. 428G10 prokMSA_id:035796 AF141440 firmicute clone CRE-FL10 prokMSA_id:052160 AF141485 clone CRE-FL72 prokMSA_id:022034 AF141520 firmicute clone CRE-PA39 prokMSA_id:019481 AF141597 firmicute prokMSA_id:058066 AF547400 alpha clone CL-S77-287 prokMSA_id:058045 AF547423 alpha clone CL-S77-310 prokMSA_id:060069 AJ427703 actinomycete clone MMS-A1 prokMSA_id:060066 AJ427709 actinomycete clone MMS-A7 prokMSA_id:061364 AY043879 actinobacterium clone SMW4.81WL prokMSA_id:062303 AY124411 actinobacterium clone CSd05 prokMSA_id:019664 U70711 firmicute OM231 prokMSA_id:012814 X72864 Actinoplanes philippinensis. 2.30.1.11.4 APL.UTAHENSIS_SUBGROUP 115 seqs 2.30.1.11.4.012 OTU 1 seq prokMSA_id:021558 AF131347 Actinoplanes sp. IM-3104 2.30.1.11.4.013 OTU 2 seqs prokMSA_id:037247 AB047504 Actinoplanes rutilosporangius prokMSA_id:023680 AJ277567 Actinoplanes digitatis strain IMSNU 22123T 2.30.1.11.4.015 OTU 1 seq prokMSA_id:023957 AF131333 Actinoplanes sp. IM-1051 2.30.1.11.4.020 OTU 1 seq prokMSA_id:028201 AF316671 Crater Lake CL120-38 2.30.1.11.4.021 OTU 1 seq prokMSA_id:030362 AF316674 Crater Lake CL120-123 2.30.1.11.4.022 OTU 56 seqs prokMSA_id:039010 AB036996 Actinoplanes consettensis prokMSA_id:021002 AB036997 Actinoplanes cyaneus prokMSA_id:032651 AB036999 Actinoplanes derwentensis prokMSA_id:024528 AB037000 Actinoplanes digitatis prokMSA_id:023936 AB037004 Actinoplanes humidus complete prokMSA_id:026230 AB037005 Actinoplanes italicus complete prokMSA_id:048199 AB037009 Actinoplanes palleronii complete prokMSA_id:031041 AB037010 Actinoplanes rectilineatus complete prokMSA_id:041503 AB037011 Actinoplanes regularis prokMSA_id:051900 AB037012 Actinoplanes utahensis prokMSA_id:040835 AB047492 Actinoplanes awajinensis subsp. mycoplanecinus prokMSA_id:027565 AB047493 Actinoplanes garbadinensis prokMSA_id:034180 AB047494 Actinoplanes ianthinogenes subsp. octamycini prokMSA_id:029970 AB047495 Actinoplanes ianthinogenes prokMSA_id:045208 AB047496 Actinoplanes kinshanensis prokMSA_id:042133 AB047497 Actinoplanes liguriae prokMSA_id:018871 AB047499 Actinoplanes philippinensis prokMSA_id:017803 AB047501 Actinoplanes pyriformis prokMSA_id:049393 AB047502 Actinoplanes regularis prokMSA_id:036605 AB047503 Actinoplanes roseosporangius prokMSA_id:017991 AB047506 Actinoplanes sp. IFO 13943 prokMSA_id:044805 AB047507 Actinoplanes sp. IFO 13944 prokMSA_id:036834 AB047508 Actinoplanes sp. IFO 14066 prokMSA_id:047233 AB047514 Actinoplanes tuftoflagellus prokMSA_id:019482 AB048213 Actinoplanes digitatis prokMSA_id:051111 AB048214 Actinoplanes consettensis prokMSA_id:049449 AB048216 Actinoplanes palleronii prokMSA_id:024733 AB048217 Actinoplanes italicus prokMSA_id:046439 AF131334 Actinoplanes sp. IM-1096 prokMSA_id:041395 AF131337 Actinoplanes sp. IM-1598 prokMSA_id:049857 AF131338 Actinoplanes sp. IM-1817 prokMSA_id:024753 AF131342 Actinoplanes sp. IM-2618 prokMSA_id:040132 AF131343 Actinoplanes sp. IM-2648 prokMSA_id:042313 AF131344 Actinoplanes sp. IM-2805 prokMSA_id:039475 AF131345 Actinoplanes sp. IM-2947 prokMSA_id:031721 AJ277566 Actinoplanes derwentensis strain IMSNU 20027T prokMSA_id:052270 AJ277571 Actinoplanes humidus strain IMSNU 22051T prokMSA_id:044085 AJ277572 Actinoplanes missouriensis strain IMSNU 22051T prokMSA_id:075832 AJ277573 Actinoplanes palleronii strain IMSNU 20038T prokMSA_id:020207 AJ277574 Actinoplanes utahensis strain IMSNU 20044T prokMSA_id:037443 AJ277575 Actinoplanes garbadinensis strain IMSNU 20040 prokMSA_id:017385 AJ277576 Actinoplanes ianthinogenes strain IMSNU 20032 prokMSA_id:024564 AJ277577 Actinoplanes kinshanensis strain IMSNU 20034 prokMSA_id:039832 AJ277578 Actinoplanes pallidoaurantiacus strain IMSNU 22128 prokMSA_id:019569 AJ277579 Actinoplanes liguriae strain IMSNU 22127 prokMSA_id:033156 AJ277580 Actinoplanes penicillatus strain IMSNU 22129 prokMSA_id:046305 AJ277582 Actinoplanes pyriformis strain IMSNU 22131 prokMSA_id:051486 AJ277583 Actinoplanes roseosporangius strain IMSNU 22133 prokMSA_id:022339 AJ277585 Actinoplanes tuftoflagellus strain IMSNU 22135 prokMSA_id:027800 AJ277586 Actinoplanes violaceus strain IMSNU 22136 prokMSA_id:084925 AJ488566 Actinoplanes sp. strain 46 prokMSA_id:076168 AY154526 earthworm intestine clone ew64 prokMSA_id:012821 X80823 Actinoplanes utahensis str. Bayer AG SE50/110 ATCC 31044. prokMSA_id:012819 X87322 str. SR 83. prokMSA_id:012818 X93186 Actinoplanes cyaneus DSM 46137 . prokMSA_id:012820 X93188 Actinoplanes regularis DSM 43151 . 2.30.1.11.4.023 OTU 1 seq prokMSA_id:032300 AF316672 Crater Lake CL120-45 2.30.1.11.4.024 OTU 1 seq prokMSA_id:038128 AF316669 Crater Lake CL120-22 2.30.1.11.4.025 OTU 2 seqs prokMSA_id:052957 AB037001 Actinoplanes durhamensis prokMSA_id:043093 AJ277568 Actinoplanes durhamensis strain IMSNU 22124T 2.30.1.11.4.026 OTU 3 seqs prokMSA_id:060801 AF491653 actinomycete clone SFD1-1 prokMSA_id:060799 AF491655 actinomycete clone SFD1-11 prokMSA_id:060782 AF491674 actinomycete clone SFD1-5 2.30.1.11.4.027 OTU 1 seq prokMSA_id:071699 AJ416178 clone Sta1-26 2.30.1.11.4.028 OTU 1 seq prokMSA_id:074732 AJ416163 clone Sta0-16 2.30.1.11.4.029 OTU 1 seq prokMSA_id:075935 AY154579 earthworm cast clone c222 2.30.1.11.4.030 OTU 1 seq prokMSA_id:086255 AJ488568 Actinoplanes sp. strain 8 2.30.1.11.4.999 poor quality 42 seqs prokMSA_id:016965 AB010619 firmicute clone ASB016 prokMSA_id:095554 AB122829 Actinoplanes sp. 384E12 prokMSA_id:097370 AB122922 Actinoplanes sp. 410A07 prokMSA_id:098617 AB122924 Actinoplanes sp. 410A09 prokMSA_id:096729 AB124191 Actinoplanes sp. 331F02 prokMSA_id:097032 AB124196 Actinoplanes sp. 331F07 prokMSA_id:097910 AB124197 Actinoplanes sp. 331F08 prokMSA_id:095907 AB124199 Actinoplanes sp. 331F10 prokMSA_id:044182 AF078269 Grassland soil clone saf2_421 prokMSA_id:044120 AF107519 SY3-22 prokMSA_id:045736 AF128637 soil C0224 prokMSA_id:045961 AF141400 firmicute clone CR-FL16 prokMSA_id:030526 AF141401 firmicute clone CR-FL18 prokMSA_id:037951 AF141420 firmicute clone CR-PA21 prokMSA_id:040261 AF141423 firmicute clone CR-PA26 prokMSA_id:025903 AF141427 firmicute clone CR-PA38 prokMSA_id:026730 AF141433 firmicute clone CR-PA52 prokMSA_id:012824 AF141467 clone CRE-FL47. prokMSA_id:022929 AF141471 firmicute clone CRE-FL53 prokMSA_id:033266 AF141481 firmicute clone CRE-FL67 prokMSA_id:050878 AF141522 firmicute clone CRE-PA41 prokMSA_id:022648 AF268310 firmicute ESR 26 prokMSA_id:037844 AF270947 clone IAFR119 prokMSA_id:045114 AF316668 Crater Lake CL120-17 prokMSA_id:030455 AF316673 Crater Lake CL120-59 prokMSA_id:045815 AF316676 Crater Lake CL120-139 prokMSA_id:019811 AF316679 Crater Lake CL500-91 prokMSA_id:068587 AF486681 clone W6-38-SC1-102 prokMSA_id:012822 AJ011161 clone 4-45. prokMSA_id:012823 AJ011164 clone 4-59. prokMSA_id:049741 AJ237544 BIWA919 prokMSA_id:074795 AJ416158 clone Med0-06 prokMSA_id:061739 AJ416170 clone Urk0-03 prokMSA_id:061679 AJ416272 clone Sta4-42 prokMSA_id:061674 AJ416278 clone Sta6-03 prokMSA_id:060072 AJ427698 actinomycete clone MMS-C4 prokMSA_id:060068 AJ427707 actinomycete clone MMS-A5 prokMSA_id:060067 AJ427708 actinomycete clone MMS-A6 prokMSA_id:060064 AJ427711 actinomycete clone MMS-A9 prokMSA_id:057008 AJ518557 clone Qui4P1-85 prokMSA_id:060889 AY135879 clone SG1-91 prokMSA_id:060846 AY135922 clone SG2-119 2.30.1.11.5 CATENULOPLANES_SUBGROUP 59 seqs 2.30.1.11.5.1 CAT.JAPONICUS_SUBGROUP 3 seqs 2.30.1.11.5.1.001 OTU 1 seq prokMSA_id:012826 D14644 Catenuloplanes japonicus str. RA330. 2.30.1.11.5.1.002 OTU 1 seq prokMSA_id:012825 D14642 Catenuloplanes japonicus IFO 14176 . 2.30.1.11.5.1.999 poor quality 1 seq prokMSA_id:012827 D14643 Catenuloplanes japonicus str. N381-14; N406-14 IFO 14177. 2.30.1.11.5.2 GM.TENUIS_SUBGROUP 18 seqs 2.30.1.11.5.2.001 OTU 5 seqs prokMSA_id:051528 AF131368 Glycomyces sp. IM-0566 prokMSA_id:042823 AF131369 Glycomyces sp. IM-0594 prokMSA_id:033446 AJ293747 Glycomyces harbinensis strain IMSNU 20070T prokMSA_id:042225 AJ293748 Glycomyces rutgersensis strain IMSNU 22074T prokMSA_id:012832 D85483 Glycomyces harbinensis str. LL-DO5139 IFO 14487 . 2.30.1.11.5.2.002 OTU 1 seq prokMSA_id:012831 D85482 Glycomyces tenuis IFO 15904. 2.30.1.11.5.2.005 OTU 6 seqs prokMSA_id:012829 AB024701 Planopolyspora crispa JCM 9312. prokMSA_id:077587 AJ294716 Catenuloplanes atrovinosus strain IMSNU 22012T prokMSA_id:078124 AJ294717 Catenuloplanes indicus strain IMSNU 22099T prokMSA_id:064356 AY113684 Catenuloplanes sp. SS-3 prokMSA_id:012830 D85476 Catenuloplanes japonicus IFO 14176 . prokMSA_id:012828 X93201 Catenuloplanes japonicus DSM 44102 . 2.30.1.11.5.2.006 OTU 1 seq prokMSA_id:051035 AB048218 Actinoplanes derwentensis 2.30.1.11.5.2.999 poor quality 5 seqs prokMSA_id:034743 AB054910 Catellatospora sp. 1258 prokMSA_id:097741 AB123766 Actinoplanes sp. 310C12 prokMSA_id:060061 AJ427714 actinomycete clone MMS-B2 prokMSA_id:093507 AJ581634 actinobacterium clone SB10 prokMSA_id:012833 D85484 Glycomyces rutgersensis IFO 14488. 2.30.1.11.5.3 CCP.CAERULEUS_SUBGROUP 38 seqs 2.30.1.11.5.3.002 OTU 1 seq prokMSA_id:012835 D14645 Couchioplanes caeruleus subsp. caeruleus IFO 13939 . 2.30.1.11.5.3.007 OTU 2 seqs prokMSA_id:038986 AB037003 Actinoplanes globisporus prokMSA_id:052031 AB048219 Actinoplanes globisporus 2.30.1.11.5.3.009 OTU 16 seqs prokMSA_id:023551 AB036998 Actinoplanes deccanensis prokMSA_id:041171 AB037002 Actinoplanes ferrugineus prokMSA_id:041400 AB037008 Actinoplanes missouriensis prokMSA_id:040127 AB047491 Actinoplanes auranticolor prokMSA_id:049242 AB047498 Actinoplanes nipponensis prokMSA_id:046296 AB047511 Actinoplanes sp. IFO 14428 prokMSA_id:017380 AB047516 Actinoplanes yunnanensis prokMSA_id:030667 AB048221 Actinoplanes ferrugineus prokMSA_id:032431 AF131348 Actinoplanes sp. IM-3145 prokMSA_id:033313 AF131358 Couchioplanes sp. IM-2175 prokMSA_id:044122 AJ277565 Actinoplanes deccanensis strain IMSNU 20026T prokMSA_id:064357 AY113685 Actinoplanes sp. YM-3 prokMSA_id:012838 D85478 Couchioplanes caeruleus subsp. azureus IFO 13993 . prokMSA_id:012836 D85479 Couchioplanes caeruleus subsp. caeruleus IFO 13939 . prokMSA_id:012834 X93185 Actinoplanes brasiliensis DSM 43805 . prokMSA_id:012837 X93202 Catenuloplanes caeruleus subsp. azureus DSM 44103 . 2.30.1.11.5.3.999 poor quality 19 seqs prokMSA_id:098183 AB122944 Actinoplanes sp. 410C10 prokMSA_id:097345 AB122949 Actinoplanes sp. 410D08 prokMSA_id:097290 AB122953 Actinoplanes sp. 410E03 prokMSA_id:098649 AB122954 Actinoplanes sp. 410E04 prokMSA_id:096020 AB122956 Actinoplanes sp. 410E07 prokMSA_id:096229 AB122957 Actinoplanes sp. 410E08 prokMSA_id:097235 AB122958 Actinoplanes sp. 410E09 prokMSA_id:098742 AB123706 Actinoplanes sp. 306F01 prokMSA_id:095588 AB123716 Actinoplanes sp. 306G01 prokMSA_id:098514 AB123767 Actinoplanes sp. 310D02 prokMSA_id:098568 AB124060 Actinoplanes sp. 319H11 prokMSA_id:096174 AB124200 Actinoplanes sp. 331F12 prokMSA_id:097921 AB124415 Actinoplanes sp. 340C08 prokMSA_id:095444 AB124416 Actinoplanes sp. 340C09 prokMSA_id:097375 AB124417 Actinoplanes sp. 340C10 prokMSA_id:095568 AB124424 Micromonospora sp. 340D05 prokMSA_id:074677 AF234074 #0319-6H8 prokMSA_id:060073 AJ427696 actinomycete clone MMS-C2 prokMSA_id:060065 AJ427710 actinomycete clone MMS-A8 2.30.1.11.6 SP.YAMANASHIENSIS 3 seqs 2.30.1.11.6.001 OTU 2 seqs prokMSA_id:012839 D63912 Spirilliplanes yamanashiensis str. YU127-1 IFO 15828 . prokMSA_id:070178 D63912 Spirilliplanes yamanashiensis strain IFO 15828 2.30.1.11.6.002 OTU 1 seq prokMSA_id:040065 AJ277570 Actinoplanes globisporus strain IMSNU 20030T 2.30.1.11.7 VS.GIFHORNENSIS 11 seqs 2.30.1.11.7.001 OTU 5 seqs prokMSA_id:034678 AF131630 Verrucosispora sp. IM-2301 prokMSA_id:037998 AF131631 Verrucosispora sp. IM-6907 prokMSA_id:093220 AY360149 Verrucosispora sp. e37 prokMSA_id:093720 AY360150 Verrucosispora sp. e80 prokMSA_id:012840 Y15523 Verrucosispora gifhornensis str. HR1-2 DSM 44337 . 2.30.1.11.7.002 OTU 1 seq prokMSA_id:045698 AY037719 earthworm cast clone C070 2.30.1.11.7.003 OTU 1 seq prokMSA_id:076063 AY154628 earthworm cast clone c278 2.30.1.11.7.999 poor quality 4 seqs prokMSA_id:095738 AB123123 Verrucosispora sp. 415D04 prokMSA_id:098312 AB123503 Micromonospora sp. 434A05 prokMSA_id:057953 AF544299 actinobacterium isolate T01 prokMSA_id:022790 AJ318775 soil clone FHM1563 2.30.1.11.8 MMS.OLIVASTEROSPORA_SUBGROUP 31 seqs 2.30.1.11.8.001 OTU 11 seqs prokMSA_id:044866 AF131409 Micromonospora sp. IM-6882 prokMSA_id:020070 AF131410 Micromonospora sp. IM-6893 prokMSA_id:046850 AF131414 Micromonospora sp. IM-6983 prokMSA_id:034721 AF131418 Micromonospora sp. IM-7065 prokMSA_id:037987 AF131421 Micromonospora sp. IM-7076 prokMSA_id:027580 AF131424 Micromonospora sp. IM-7221 prokMSA_id:038837 AF131430 Micromonospora sp. IM-7701 prokMSA_id:037265 AF131629 Verrucosispora sp. IM-0835 prokMSA_id:088326 AY295799 Micromonospora sp. 40010 prokMSA_id:012842 X92603 Micromonospora peucetica str. DSM 43363 strain. prokMSA_id:012841 X92613 Micromonospora olivasterospora str. MK70 DSM 43868 . 2.30.1.11.8.002 OTU 3 seqs prokMSA_id:055498 AY040617 Salinospora sp. CNH440 prokMSA_id:059323 AY040618 Salinospora sp. CNH536 prokMSA_id:059320 AY040622 Salinospora sp. CNH898 2.30.1.11.8.003 OTU 1 seq prokMSA_id:028575 AB047512 Actinoplanes sp. IFO 14460 2.30.1.11.8.004 OTU 1 seq prokMSA_id:044279 AF171700 Catellatospora koreensis 2.30.1.11.8.005 OTU 4 seqs prokMSA_id:051864 AB047515 Actinoplanes violaceus prokMSA_id:084068 AJ488563 Actinoplanes sp. strain 19 prokMSA_id:083420 AJ488564 Actinoplanes sp. strain 20 prokMSA_id:085492 AJ488565 Actinoplanes sp. strain 159 2.30.1.11.8.999 poor quality 11 seqs prokMSA_id:097419 AB122955 Micromonospora sp. 410E05 prokMSA_id:096134 AB123116 Micromonospora sp. 415C08 prokMSA_id:096253 AB123481 Couchioplanes sp. 431F10 prokMSA_id:097622 AB123549 Micromonospora sp. 434F09 prokMSA_id:097609 AB123703 Micromonospora sp. 306E08 prokMSA_id:095562 AB123704 Micromonospora sp. 306E09 prokMSA_id:096307 AB124190 Micromonospora sp. 331F01 prokMSA_id:097241 AB124211 Micromonospora sp. 331G12 prokMSA_id:098250 AB124528 Micromonospora sp. 343F05 prokMSA_id:066661 AF432236 Ellin406 prokMSA_id:058076 AF498749 Ellin367 2.30.1.11.9 MMS.ECHINOSPORA_SUBGROUP 140 seqs 2.30.1.11.9.006 OTU 1 seq prokMSA_id:012861 X92706 clone TM214. 2.30.1.11.9.008 OTU 98 seqs prokMSA_id:028174 AB074671 Actinobacterium D-N0-7 prokMSA_id:023560 AF131386 Micromonospora sp. IM-0059 prokMSA_id:036912 AF131387 Micromonospora sp. IM-0060 prokMSA_id:040023 AF131389 Micromonospora sp. IM-0641 prokMSA_id:024787 AF131392 Micromonospora sp. IM-1062 prokMSA_id:031349 AF131393 Micromonospora sp. IM-1078 prokMSA_id:026119 AF131394 Micromonospora sp. IM-1105 prokMSA_id:028667 AF131395 Micromonospora sp. IM-1238 prokMSA_id:019940 AF131396 Micromonospora sp. IM-1479 prokMSA_id:036900 AF131397 Micromonospora sp. IM-1514 prokMSA_id:044905 AF131398 Micromonospora sp. IM-1601 prokMSA_id:031357 AF131399 Micromonospora sp. IM-2205 prokMSA_id:051180 AF131400 Micromonospora sp. IM-2217 prokMSA_id:030634 AF131401 Micromonospora sp. IM-2726 prokMSA_id:032780 AF131402 Micromonospora sp. IM-2827 prokMSA_id:047532 AF131404 Micromonospora sp. IM-3018 prokMSA_id:018035 AF131405 Micromonospora sp. IM-6760 prokMSA_id:044803 AF131406 Micromonospora sp. IM-6821 prokMSA_id:051210 AF131407 Micromonospora sp. IM-6856 prokMSA_id:040213 AF131408 Micromonospora sp. IM-6875 prokMSA_id:048551 AF131412 Micromonospora sp. IM-6946 prokMSA_id:023939 AF131413 Micromonospora sp. IM-6948 prokMSA_id:027960 AF131415 Micromonospora sp. IM-7009 prokMSA_id:029191 AF131416 Micromonospora sp. IM-7020 prokMSA_id:033868 AF131417 Micromonospora sp. IM-7028 prokMSA_id:044390 AF131419 Micromonospora sp. IM-7070 prokMSA_id:051095 AF131420 Micromonospora sp. IM-7072 prokMSA_id:029283 AF131422 Micromonospora sp. IM-7086 prokMSA_id:038587 AF131423 Micromonospora sp. IM-7199 prokMSA_id:050203 AF131425 Micromonospora sp. IM-7241 prokMSA_id:047634 AF131426 Micromonospora sp. IM-7242 prokMSA_id:028063 AF131427 Micromonospora sp. IM-7416 prokMSA_id:044179 AF131428 Micromonospora sp. IM-7442 prokMSA_id:048190 AF131431 Micromonospora sp. IM-7705 prokMSA_id:016537 AF131432 Micromonospora sp. IM-8945 prokMSA_id:042214 AF367587 Micromonospora sp. 0138 prokMSA_id:068757 AF479344 Glacial ice G200-C39 prokMSA_id:012856 AJ245712 Micromonospora aurantiaca str. W2b. prokMSA_id:082514 AJ560635 Micromonospora endolithica strain DSM 44398T prokMSA_id:085407 AJ560636 Micromonospora sp. DSM 44397 strain DSM 44397 prokMSA_id:083628 AJ560637 Micromonospora sp. DSM 44396 strain DSM 44396 prokMSA_id:059317 AY040619 Salinospora sp. CNH643 prokMSA_id:059322 AY040620 Salinospora sp. CNH646 prokMSA_id:059321 AY040621 Salinospora sp. CNH725 prokMSA_id:059318 AY040623 Salinospora sp. CNH964 prokMSA_id:056010 AY040624 Micromonospora sp. CNH512 prokMSA_id:059319 AY040625 Micromonospora sp. CNH394 prokMSA_id:084817 AY221489 Micromonospora sp. N0088 prokMSA_id:085587 AY221490 Micromonospora sp. N0093 prokMSA_id:084757 AY221493 Micromonospora sp. N0152 prokMSA_id:085857 AY221497 Micromonospora sp. N0157 prokMSA_id:085374 AY221498 Micromonospora sp. N0158 prokMSA_id:089019 AY295801 Micromonospora sp. 40011 prokMSA_id:093232 AY360151 Micromonospora sp. e3 prokMSA_id:094058 AY360152 Micromonospora sp. e4 prokMSA_id:094262 AY360153 Micromonospora sp. e5 prokMSA_id:093841 AY360156 Micromonospora sp. e16 prokMSA_id:093650 AY360157 Micromonospora sp. e17 prokMSA_id:093937 AY360160 Micromonospora sp. e33 prokMSA_id:094204 AY360161 Micromonospora sp. e35 prokMSA_id:093252 AY360162 Micromonospora sp. e36 prokMSA_id:093484 AY360165 Micromonospora sp. i19 prokMSA_id:093498 AY360166 Micromonospora sp. ANT 25-001 prokMSA_id:093923 AY360167 Micromonospora sp. ARG 13-042 prokMSA_id:093293 AY360169 Micromonospora sp. POR 21-001 prokMSA_id:012862 D85489 Micromonospora chalcea IFO 12135. prokMSA_id:012876 L11306 Frankia sp. str. G48. prokMSA_id:012863 U58531 Micromonospora chalcea ATCC 12452 . prokMSA_id:012846 U58532 Micromonospora echinospora subsp. echinospora ATCC 15837 . prokMSA_id:012860 X92594 Micromonospora chalcea DSM 43026 . prokMSA_id:012874 X92595 Micromonospora purpurea DSM 43036 . prokMSA_id:012875 X92596 Micromonospora melanospora str. DSM 43126. prokMSA_id:012870 X92597 Micromonospora echinospora subsp. ferruginea DSM 43141 . prokMSA_id:012852 X92598 Micromonospora coerulea DSM 43143 . prokMSA_id:012858 X92600 Micromonospora globosa str. DSM 43170. prokMSA_id:012848 X92601 Micromonospora halophytica subsp. halophytica. prokMSA_id:012844 X92602 Micromonospora narashino str. DSM 43172. prokMSA_id:012855 X92604 Micromonospora aurantiaca DSM 43813 . prokMSA_id:012864 X92605 Micromonospora brunnea DSM 43814 . prokMSA_id:012853 X92607 Micromonospora echinospora subsp. echinospora DSM 43816 . prokMSA_id:012877 X92608 Micromonospora echinospora subsp. pallida DSM 43817 . prokMSA_id:012868 X92609 Micromonospora halophytica subsp. nigra DSM 43818 . prokMSA_id:012867 X92610 Micromonospora inositola DSM 43819 . prokMSA_id:012843 X92611 Micromonospora purpureochromogenes DSM 43821 . prokMSA_id:012866 X92612 Micromonospora rhodorangea DSM 43822 . prokMSA_id:012847 X92615 Micromonospora globosa str. DSM 43893. prokMSA_id:012845 X92616 Micromonospora brunnescens str. DSM 43902 strain. prokMSA_id:012850 X92617 Micromonospora citrea str. DSM 43903. prokMSA_id:012872 X92618 Micromonospora echinoaurantiaca str. DSM 44390. prokMSA_id:012854 X92620 Micromonospora fulviviridis str. DSM 43906. prokMSA_id:012859 X92622 Micromonospora lacustris str. DSM 43908. prokMSA_id:012878 X92623 Micromonospora viridifaciens str. DSM 43909. prokMSA_id:012871 X92624 Micromonospora sagamiensis subsp. sagamiensis str. DSM 43912. prokMSA_id:012851 X92625 Micromonospora echinobrunnea str. DSM 43913. prokMSA_id:012857 X92627 Micromonospora fulvopurpureus str. DSM 43918. prokMSA_id:012849 X92628 Micromonospora chersinia DSM 44151 . prokMSA_id:012873 X92629 Micromonospora inyoensis str. DSM 46123. prokMSA_id:012865 X92631 Micromonospora rosaria DSM 803 . 2.30.1.11.9.009 OTU 1 seq prokMSA_id:022701 AJ277569 Actinoplanes ferrugineus strain IMSNU 22125T 2.30.1.11.9.010 OTU 1 seq prokMSA_id:059130 AY121828 clone P-22 2.30.1.11.9.011 OTU 1 seq prokMSA_id:030373 AF131350 Actinoplanes sp. IM-4188 2.30.1.11.9.012 OTU 1 seq prokMSA_id:058318 AF543499 clone ASL8 2.30.1.11.9.013 OTU 1 seq prokMSA_id:051187 AB048215 Actinoplanes durhamensis 2.30.1.11.9.014 OTU 1 seq prokMSA_id:052136 AJ277584 Actinoplanes teichomyceticus strain IMSNU 20043 2.30.1.11.9.015 OTU 1 seq prokMSA_id:076227 AY154582 earthworm cast clone c225 2.30.1.11.9.016 OTU 1 seq prokMSA_id:078784 AY177764 actinobacterium 2.30.1.11.9.999 poor quality 33 seqs prokMSA_id:068644 AB081814 seuence clone:A-07 prokMSA_id:096603 AB123105 Micromonospora sp. 415B06 prokMSA_id:097031 AB123106 Micromonospora sp. 415B08 prokMSA_id:095808 AB123107 Micromonospora sp. 415B09 prokMSA_id:097523 AB123109 Verrucosispora sp. 415B12 prokMSA_id:098146 AB123110 Micromonospora sp. 415C01 prokMSA_id:097304 AB123112 Verrucosispora sp. 415C03 prokMSA_id:097248 AB123113 Verrucosispora sp. 415C05 prokMSA_id:096487 AB123114 Micromonospora sp. 415C06 prokMSA_id:098327 AB123115 Verrucosispora sp. 415C07 prokMSA_id:096772 AB123117 Micromonospora sp. 415C09 prokMSA_id:096886 AB123118 Verrucosispora sp. 415C10 prokMSA_id:097692 AB123119 Micromonospora sp. 415C11 prokMSA_id:098133 AB123129 Verrucosispora sp. 415D11 prokMSA_id:098169 AB123130 Verrucosispora sp. 415E01 prokMSA_id:097700 AB123421 Verrucosispora sp. 428G05 prokMSA_id:097531 AB123427 Micromonospora sp. 428H05 prokMSA_id:098069 AB123455 Verrucosispora sp. 431C08 prokMSA_id:095533 AB123456 Verrucosispora sp. 431C09 prokMSA_id:095998 AB123458 Verrucosispora sp. 431C12 prokMSA_id:097614 AB123463 Verrucosispora sp. 431D05 prokMSA_id:096691 AB123467 Micromonospora sp. 431D10 prokMSA_id:066652 AF432247 Ellin423 prokMSA_id:060121 AJ427645 actinomycete clone ACT-B4 prokMSA_id:060074 AJ427699 actinomycete clone MMS-C5 prokMSA_id:060071 AJ427701 actinomycete clone MMS-C7 prokMSA_id:060070 AJ427702 actinomycete clone MMS-C8 prokMSA_id:056152 AJ427706 actinomycete clone MMS-A4 prokMSA_id:060063 AJ427712 actinomycete clone MMS-A10 prokMSA_id:060059 AJ427715 actinomycete clone MMS-B3 prokMSA_id:060058 AJ427716 actinomycete clone MMS-B4 prokMSA_id:066862 AY096150 clone F2-1 prokMSA_id:012869 M59075 Frankia sp. str. L27. 2.30.1.11.10 MMS.CARBONACEA_SUBGROUP 49 seqs 2.30.1.11.10.001 OTU 34 seqs prokMSA_id:012880 AF068056 Micromonospora Y10 str. Y10. prokMSA_id:021801 AF131388 Micromonospora sp. IM-0564 prokMSA_id:050606 AF131390 Micromonospora sp. IM-0643 prokMSA_id:039229 AF131391 Micromonospora sp. IM-0649 prokMSA_id:020384 AF131403 Micromonospora sp. IM-2857 prokMSA_id:025513 AF131429 Micromonospora sp. IM-7450 prokMSA_id:044843 AF152109 Micromonospora matsumotoense prokMSA_id:083918 AY221484 Micromonospora sp. N0072 prokMSA_id:082551 AY221485 Micromonospora sp. N0073 prokMSA_id:084504 AY221486 Micromonospora sp. N0074 prokMSA_id:082848 AY221487 Micromonospora sp. N0075 prokMSA_id:085416 AY221491 Micromonospora sp. N0097 prokMSA_id:086565 AY221492 Micromonospora sp. N0098 prokMSA_id:085256 AY221495 Micromonospora sp. N0155 prokMSA_id:085320 AY221496 Micromonospora sp. N0156 prokMSA_id:083284 AY221499 Micromonospora sp. N0161 prokMSA_id:082786 AY221500 Micromonospora sp. N0162 prokMSA_id:085111 AY221501 Micromonospora sp. N0163 prokMSA_id:085915 AY221502 Micromonospora sp. N0168 prokMSA_id:083827 AY221503 Micromonospora sp. N0179 prokMSA_id:087823 AY291589 Micromonospora sp. EN43 prokMSA_id:093558 AY360154 Micromonospora sp. e7 prokMSA_id:094036 AY360155 Micromonospora sp. e15 prokMSA_id:094056 AY360158 Micromonospora sp. e24 prokMSA_id:093360 AY360159 Micromonospora sp. e32 prokMSA_id:093491 AY360163 Micromonospora sp. e78 prokMSA_id:094233 AY360164 Micromonospora sp. e79 prokMSA_id:093892 AY360168 Micromonospora sp. JPN 18-047 prokMSA_id:012884 X87321 str. SR 53. prokMSA_id:012879 X92599 Micromonospora carbonacea subsp. carbonacea DSM 43168 . prokMSA_id:012885 X92606 Micromonospora carbonacea subsp. aurantiaca. prokMSA_id:012882 X92619 Micromonospora fulvoviolaceus str. DSM 43905. prokMSA_id:012883 X92621 Micromonospora floridensis str. DSM 43907. prokMSA_id:012881 X92626 Micromonospora yulongensis str. DSM 43915. 2.30.1.11.10.002 OTU 1 seq prokMSA_id:037529 AB047513 Actinoplanes teichomyceticus 2.30.1.11.10.999 poor quality 14 seqs prokMSA_id:091712 AB089241 Longispora albida prokMSA_id:098148 AB122964 Micromonospora sp. 410F05 prokMSA_id:095396 AB123425 Actinoplanes sp. 428G11 prokMSA_id:098021 AB123603 Actinoplanes sp. 303C12 prokMSA_id:095730 AB123605 Actinoplanes sp. 303D02 prokMSA_id:097854 AB123764 Actinoplanes sp. 310C09 prokMSA_id:096314 AB124160 Micromonospora sp. 331C05 prokMSA_id:097113 AB124302 Micromonospora sp. 334H11 prokMSA_id:095919 AB124303 Micromonospora sp. 334H12 prokMSA_id:027880 AF234092 #0319-7F6 prokMSA_id:031508 AF311998 Micromonospora matsumotoense axC10 prokMSA_id:066659 AF432238 Micromonospora sp. Ellin410 prokMSA_id:066656 AF432240 Micromonospora sp. Ellin412 prokMSA_id:029018 AJ404529 Micromonospora MM1 2.30.1.11.11 CTL.FERRUGINEA 10 seqs 2.30.1.11.11.001 OTU 4 seqs prokMSA_id:027139 AF131355 Catellatospora sp. IM-6046 prokMSA_id:038053 AF152108 Catellatospora ferruginea prokMSA_id:078090 AJ294715 Catellatospora ishikariense strain IMSNU 22004 prokMSA_id:012886 X93199 Catellatospora ferruginea DSM 44099 . 2.30.1.11.11.999 poor quality 6 seqs prokMSA_id:095670 AB122959 Catellatospora sp. 410E10 prokMSA_id:097909 AB122965 Catellatospora sp. 410F08 prokMSA_id:098652 AB123381 Catellatospora sp. 428B12 prokMSA_id:095361 AB124210 Actinoplanes sp. 331G10 prokMSA_id:062312 AY124399 actinobacterium clone CSa01 prokMSA_id:062304 AY124410 actinobacterium clone CSc10 2.30.1.11.12 CTL.CITREA_SUBGROUP 13 seqs 2.30.1.11.12.001 OTU 2 seqs prokMSA_id:042584 AF152110 Catellatospora tsunoense prokMSA_id:012890 X93200 Catellatospora tsunoense DSM 44101 . 2.30.1.11.12.002 OTU 8 seqs prokMSA_id:025278 AF131354 Catellatospora sp. IM-3766 prokMSA_id:035366 AF152106 Catellatospora citrea subsp. citrea prokMSA_id:046148 AF152107 Catellatospora citrea subsp. methionotrophica prokMSA_id:012888 D85477 Catellatospora citrea subsp. citrea IFO 14495 . prokMSA_id:074352 D85477 Catellatospora citrea strain IFO14495 prokMSA_id:012889 X93197 Catellatospora citrea subsp. citrea DSM 44097 . prokMSA_id:012887 X93198 Catellatospora citrea DSM 44098 . prokMSA_id:034467 Y09219 Catellatospora sp. 2.30.1.11.12.003 OTU 1 seq prokMSA_id:045550 AF131356 Catellatospora sp. IM-7774 2.30.1.11.12.004 OTU 1 seq prokMSA_id:083620 AY242625 soil clone Tc123-F10 2.30.1.11.12.999 poor quality 1 seq prokMSA_id:055283 AY143744 Catellatospora sp. clone V93 2.30.1.11.13 DCT.AURANTIACUM_SUBGROUP 60 seqs 2.30.1.11.13.003 OTU 30 seqs prokMSA_id:026254 AB017374 Actinomycete SF2809 complete prokMSA_id:042817 AF131359 Dactylosporangium sp. IM-6276 prokMSA_id:016332 AF131360 Dactylosporangium sp. IM-6719 prokMSA_id:017704 AF131361 Dactylosporangium sp. IM-7021 prokMSA_id:029239 AF131362 Dactylosporangium sp. IM-7022 prokMSA_id:042973 AF131363 Dactylosporangium sp. IM-7068 prokMSA_id:040715 AF131364 Dactylosporangium sp. IM-7152 prokMSA_id:035427 AF131365 Dactylosporangium sp. IM-7157 prokMSA_id:025431 AF131366 Dactylosporangium sp. IM-7210 prokMSA_id:066863 AY096152 clone F2-4 prokMSA_id:012895 D85480 Dactylosporangium aurantiacum str. D-748 IFO 12592 . prokMSA_id:073463 D85480 Dactylosporangium auranticum strain IFO12592 prokMSA_id:073448 D85481 Dactylosporangium thailandense strain IFO12593 prokMSA_id:012901 D85481 Dactylosporangium thailandense IFO 12593 . prokMSA_id:012897 D86938 Dactylosporangium "salmoneum" IFO 14103. prokMSA_id:070854 D86939 Dactylosporangium vinaceum strain IFO14181 prokMSA_id:012891 D86939 Dactylosporangium vinaceum IFO 14181 . prokMSA_id:012904 D86940 Dactylosporangium matsuzakiense IFO 14259 . prokMSA_id:012893 D86941 Dactylosporangium roseum IFO 14352 . prokMSA_id:071488 D86941 Dactylosporangium roseum strain IFO14352 prokMSA_id:012898 D86942 Dactylosporangium fulvum IFO 14381 . prokMSA_id:073995 D86942 Dactylosporangium fulvum strain IFO14381 prokMSA_id:012892 U58528 Dactylosporangium aurantiacum str. D-748 ATCC 23491 . prokMSA_id:012899 U58529 Dactylosporangium roseum IFO 14352 . prokMSA_id:012905 X93191 Dactylosporangium aurantiacum str. D-748 DSM 43157 . prokMSA_id:012907 X93192 Dactylosporangium fulvum DSM 43917 . prokMSA_id:012900 X93193 Dactylosporangium matsuzakiense DSM 43810 . prokMSA_id:012903 X93194 Dactylosporangium roseum DSM 43916 . prokMSA_id:012896 X93195 Dactylosporangium "salmoneum" DSM 43910. prokMSA_id:012906 X93196 Dactylosporangium vinaceum DSM 43823 . 2.30.1.11.13.004 OTU 1 seq prokMSA_id:012902 X92630 Dactylosporangium thailandense DSM 43158 . 2.30.1.11.13.005 OTU 4 seqs prokMSA_id:037925 AB006161 Virgosporangium ochraceum strain:YU794-41 prokMSA_id:034942 AB006162 Virgosporangium ochraceum strain:YU793-41 prokMSA_id:052890 AB006167 Virgosporangium ochraceum strain:YU655-43 prokMSA_id:028171 AB006169 Virgosporangium aurantiacum strain:YU438-5 2.30.1.11.13.999 poor quality 25 seqs prokMSA_id:098486 AB122786 Dactylosporangium sp. 384A08 prokMSA_id:098544 AB122808 Dactylosporangium sp. 384C08 prokMSA_id:097824 AB122827 Dactylosporangium sp. 384E08 prokMSA_id:096946 AB122849 Dactylosporangium sp. 384H07 prokMSA_id:096763 AB122967 Dactylosporangium sp. 410G01 prokMSA_id:095878 AB123058 Dactylosporangium sp. 413C03 prokMSA_id:098680 AB123093 Dactylosporangium sp. 413H09 prokMSA_id:095352 AB123094 Dactylosporangium sp. 413H10 prokMSA_id:098660 AB123417 Dactylosporangium sp. 428G01 prokMSA_id:095743 AB123419 Dactylosporangium sp. 428G03 prokMSA_id:098134 AB123469 Dactylosporangium sp. 431D12 prokMSA_id:098020 AB123513 Dactylosporangium sp. 434B06 prokMSA_id:097555 AB123526 Dactylosporangium sp. 434D06 prokMSA_id:096916 AB123551 Dactylosporangium sp. 434F12 prokMSA_id:098056 AB123570 Dactylosporangium sp. 434H10 prokMSA_id:098848 AB123806 Dactylosporangium sp. 310G07 prokMSA_id:096873 AB124189 Virgosporangium sp. 331E12 prokMSA_id:042443 AF429064 clone CR99-7-30 prokMSA_id:071381 AF432233 Ellin402 prokMSA_id:060057 AJ427717 actinomycete clone DCT-C1 prokMSA_id:073953 AJ427718 actinomycete clone DCT-C2 prokMSA_id:072321 AJ427719 actinomycete clone DCT-A1 prokMSA_id:073939 AJ427720 actinomycete clone DCT-A2 prokMSA_id:072404 AJ427721 actinomycete clone DCT-A3 prokMSA_id:012894 X72779 Dactylosporangium aurantiacum str. D-748 DSM 43157 . 2.30.1.12 SACCHAROPOLYSPORA_GROUP 455 seqs 2.30.1.12.1 PSC.HALOPHOBICA_SUBGROUP 96 seqs 2.30.1.12.1.003 OTU 11 seqs prokMSA_id:012932 AF118130 Pseudonocardia DB1 str. DB1. prokMSA_id:018128 AF378364 Pseudonocardia sulfidoxydans prokMSA_id:012931 AJ249200 Pseudonocardia K1 str. K1. prokMSA_id:018313 AJ252826 Pseudonocardia hydrocarbonoxydans strain IMSNU 22140T prokMSA_id:020264 AJ252827 Pseudonocardia halophobica strain IMSNU 21327T prokMSA_id:085008 AJ556156 Pseudonocardia benzenivorans prokMSA_id:085863 AY247276 Pseudonocardia sp. M1 prokMSA_id:091804 AY340622 Pseudonocardia dioxanivorans prokMSA_id:012927 Y08534 Pseudonocardia halophobica DSM 43089 . prokMSA_id:012930 Y08537 Pseudonocardia sulfidoxydans str. 592 DSM 44248 . prokMSA_id:012913 Z14111 Pseudonocardia halophobica DSM 43089 . 2.30.1.12.1.004 OTU 1 seq prokMSA_id:012926 Y08536 Pseudonocardia asaccharolytica str. 580 DSM 44247 . 2.30.1.12.1.005 OTU 1 seq prokMSA_id:012923 X87314 str. SR 244a. 2.30.1.12.1.006 OTU 5 seqs prokMSA_id:017516 AJ252823 Pseudonocardia alni strain IMSNU 20049T prokMSA_id:074545 AJ252831 Pseudonocardia sp. strain IMSNU 22071 prokMSA_id:088738 AJ576010 Pseudonocardia antarctica strain DVS 5a1T prokMSA_id:082726 AY177725 Pseudonocardiaceae T4 prokMSA_id:012922 Y08535 Pseudonocardia alni str. 3LS DSM 44104 . 2.30.1.12.1.008 OTU 1 seq prokMSA_id:012915 AJ007000 str. LAA2. 2.30.1.12.1.011 OTU 1 seq prokMSA_id:018239 AF325728 Actinobispora xinjiangensis 2.30.1.12.1.012 OTU 1 seq prokMSA_id:069562 AF306652 Tinker soil 1 2.30.1.12.1.014 OTU 7 seqs prokMSA_id:022784 AF234120 #0649-1I18 prokMSA_id:050638 AF325725 Pseudonocardia zijingensis prokMSA_id:017003 AF325726 Actinobispora alaniniphila prokMSA_id:027130 AF325727 Actinobispora aurantiaca prokMSA_id:031830 AJ252822 Actinobispora yunnanensis strain IMSNU 22019T prokMSA_id:082690 AJ555207 Actinobacteridae clone ACF42 prokMSA_id:012916 D85472 Actinobispora yunnanensis IFO 15681. 2.30.1.12.1.015 OTU 3 seqs prokMSA_id:043762 AJ252824 Pseudonocardia autotrophica strain IMSNU 20050T prokMSA_id:051374 AJ252825 Pseudonocardia compacta strain IMSNU 20111T prokMSA_id:030436 AJ252833 Soil strain LM 157 2.30.1.12.1.016 OTU 1 seq prokMSA_id:033771 AF131481 Pseudonocardia sp. IM-6071 2.30.1.12.1.017 OTU 1 seq prokMSA_id:035860 AF465644 Actinobacterium YNPRH1P-1 2.30.1.12.1.018 OTU 1 seq prokMSA_id:035897 AF422576 clone t001 2.30.1.12.1.019 OTU 1 seq prokMSA_id:042025 AJ249206 Pseudonocardia spinospora isolate LM 141T 2.30.1.12.1.020 OTU 2 seqs prokMSA_id:077990 AB074634 actinobacterium clone:APe4_52 prokMSA_id:043413 AJ252828 Pseudonocardia petroleophila strain IMSNU 22072T 2.30.1.12.1.021 OTU 1 seq prokMSA_id:044587 AJ252830 Pseudonocardia thermophila strain IMSNU 20112T 2.30.1.12.1.022 OTU 1 seq prokMSA_id:046023 AF234127 #0319-6A24 2.30.1.12.1.023 OTU 1 seq prokMSA_id:051028 AJ252829 Pseudonocardia saturnea strain IMSNU 20052T 2.30.1.12.1.024 OTU 1 seq prokMSA_id:066811 AF454510 Pseudonocardia chlorethenivorans 2.30.1.12.1.025 OTU 1 seq prokMSA_id:074623 AF131480 Pseudonocardia sp. IM-6067 2.30.1.12.1.026 OTU 1 seq prokMSA_id:081904 AY192059 alpha clone P51-GM4R 2.30.1.12.1.027 OTU 1 seq prokMSA_id:088338 AY221600 gamma clone HN1-47 2.30.1.12.1.999 poor quality 52 seqs prokMSA_id:033073 AB054907 Pseudonocardia sp. 1732b prokMSA_id:095628 AB123059 Streptosporangineae 413C04 prokMSA_id:097569 AB123060 Streptosporangineae 413C05 prokMSA_id:069304 AF017804 S1C26 prokMSA_id:012934 AF056706 Actinobispora yunnanensis str. Y-11981 CCTCC M90959 . prokMSA_id:012933 AF056707 Actinobispora aurantiaca str. Y-14860 CCTCC AA97002 . prokMSA_id:012929 AF056708 Actinobispora alaniniphila str. Y-16303 CCTCC AA97001 . prokMSA_id:012910 AF056709 Actinobispora xinjiangensis str. XJ-45 CCTCC AA97020 . prokMSA_id:020165 AF064968 Pseudonocardia sp. 'CIBE G7' 5' end prokMSA_id:012917 AF064970 Pseudonocardia 'CIBE D11' str. CIBE D11. prokMSA_id:027442 AF064971 Pseudonocardia sp. 'CIBE O1' 5' end prokMSA_id:022369 AF064972 Pseudonocardia sp. 'CIBE O1' 3' end prokMSA_id:012924 AF064976 Pseudonocardia 'CIBE A12' str. CIBE A12. prokMSA_id:041890 AF131482 Pseudonocardia sp. IM-6074 prokMSA_id:051056 AF333553 Actinobacterium NW-Sp3EI prokMSA_id:050653 AF465663 DGGE band YNPRH-B4 prokMSA_id:090232 AF491897 Actinomycete symbiont 1 of Acromyrmex octospinosus prokMSA_id:088467 AF491898 Actinomycete symbiont 2 of Acromyrmex octospinosus prokMSA_id:089761 AF491899 Actinomycete symbiont 3 of Acromyrmex octospinosus prokMSA_id:057929 AF544330 actinobacterium isolate M17 prokMSA_id:034435 AH006990 Pseudonocardia sp. 'CIBE G7' and genes prokMSA_id:044288 AH006991 Pseudonocardia sp. 'CIBE O1' strain CIBE O1 prokMSA_id:012914 AJ006999 str. LAA1. prokMSA_id:021262 AJ251948 clone Hb5K2 prokMSA_id:032206 AJ251950 clone Hb5K19 prokMSA_id:027591 AJ251952 clone Hb5K41 prokMSA_id:033624 AJ251956 clone Hb5K56 prokMSA_id:047397 AJ298591 Hbr-K12 prokMSA_id:071560 AJ400508 clone Hb1-K67 prokMSA_id:072058 AJ400512 clone Hb1-K94 prokMSA_id:040963 AJ400519 clone Hb1-K52 prokMSA_id:017009 AJ400541 clone Hb3-K18 prokMSA_id:037331 AJ400545 clone Hb3-K26 prokMSA_id:073847 AJ421172 clone C8-K12 prokMSA_id:060128 AJ427635 actinomycete clone ACT-A1 prokMSA_id:062621 AJ504490 isolate P1CN19 prokMSA_id:062309 AY124401 actinobacterium clone CSb01 prokMSA_id:074128 AY143779 Pseudonocardia sp. clone Pr45 prokMSA_id:069084 AY144123 Pseudonocardia sp. clone P83 prokMSA_id:079222 AY186803 clone unel12 prokMSA_id:098384 AY395165 actinobacterium clone F12ST prokMSA_id:012909 M20389 Pseudonocardia thermophila str. A18 ATCC 19285 . prokMSA_id:012912 X53195 Pseudonocardia thermophila str. A18 ATCC 19285 . prokMSA_id:012935 X54288 Pseudonocardia autotrophica. prokMSA_id:012921 X55608 Amycolata petrophilea. prokMSA_id:012908 X55609 Amycolata nitrificans. prokMSA_id:012919 X76954 Pseudonocardia alni str. 3LS VKM AC901 . prokMSA_id:012918 X76955 Pseudonocardia hydrocarbonoxydans DSM 43281 . prokMSA_id:012928 X76956 Pseudonocardia saturnea DSM 43195 . prokMSA_id:012920 X76959 Pseudonocardia compacta DSM 43592 . prokMSA_id:012925 X80596 Pseudonocardia petroleophila ATCC 15777 . prokMSA_id:012911 X91527 clone K12. 2.30.1.12.2 KIB.ARIDUM_SUBGROUP 6 seqs 2.30.1.12.2.001 OTU 3 seqs prokMSA_id:030607 AJ311174 Kibdelosporangium aridum subsp. aridum strain DSM 43828T prokMSA_id:056399 AJ512463 Kibdelosporangium aridum subsp. largum strain DSM 44150T prokMSA_id:012937 X53191 Kibdelosporangium aridum subsp. aridum. 2.30.1.12.2.002 OTU 1 seq prokMSA_id:012936 X53190 Kibdelosporangium aridum subsp. aridum. 2.30.1.12.2.999 poor quality 2 seqs prokMSA_id:037698 AF234104 #0319-8A2 prokMSA_id:021045 M29283 K.aridum 2.30.1.12.3 SCP.HIRSUTA_SUBGROUP 51 seqs 2.30.1.12.3.001 OTU 1 seq prokMSA_id:012952 X54287 Actinopolyspora halophila. 2.30.1.12.3.002 OTU 1 seq prokMSA_id:012950 Z22730 Actinopolyspora mortivallis JCM 7550 . 2.30.1.12.3.003 OTU 1 seq prokMSA_id:012944 U93341 Saccharopolyspora hirsuta subsp. hirsuta ATCC 27875 . 2.30.1.12.3.004 OTU 1 seq prokMSA_id:012943 AF002819 Saccharopolyspora taberi str. LL-WRAT-210 DSM 43856 . 2.30.1.12.3.005 OTU 1 seq prokMSA_id:012942 AF154128 Saccharopolyspora flava str. AS4.1520T. 2.30.1.12.3.006 OTU 1 seq prokMSA_id:012941 AF127526 Saccharopolyspora thermophilus str. str216. 2.30.1.12.3.007 OTU 1 seq prokMSA_id:012940 AF002818 Saccharopolyspora spinosa str. A83543.1 DSM 44228 . 2.30.1.12.3.008 OTU 2 seqs prokMSA_id:016982 AF131485 Saccharopolyspora sp. IM-6850 prokMSA_id:037273 AF131486 Saccharopolyspora sp. IM-6889 2.30.1.12.3.009 OTU 2 seqs prokMSA_id:070980 AF131488 Saccharopolyspora sp. IM-7019 prokMSA_id:017258 AF131490 Saccharopolyspora sp. IM-8127 2.30.1.12.3.010 OTU 1 seq prokMSA_id:017604 AF131487 Saccharopolyspora sp. IM-6897 2.30.1.12.3.011 OTU 12 seqs prokMSA_id:036897 AJ318408 Mobiluncus curtisii subsp. curtisii strain CCUG 21018 prokMSA_id:032595 AJ318409 Mobiluncus curtisii subsp. holmesii strain CCUG 17762T prokMSA_id:078008 AJ427623 Mobiluncus curtisii subsp. curtisii strain CCUG 21018T prokMSA_id:078135 AJ427624 Mobiluncus curtisii subsp. holmesii strain CCUG 17762T prokMSA_id:094023 AJ576047 Mobiluncus curtisii strain CCUG 14425 prokMSA_id:093318 AJ576049 Mobiluncus curtisii strain CCUG 14552 prokMSA_id:094483 AJ576074 Mobiluncus curtisii strain CCUG 17993 prokMSA_id:094776 AJ576075 Mobiluncus curtisii strain CCUG 17994 prokMSA_id:095061 AJ576084 Mobiluncus curtisii strain CCUG 22339 prokMSA_id:094485 AJ576085 Mobiluncus curtisii strain CCUG 22340 prokMSA_id:094989 AJ576086 Mobiluncus curtisii strain CCUG 24716 prokMSA_id:095111 AJ576088 Mobiluncus curtisii strain CCUG 44166B 2.30.1.12.3.012 OTU 1 seq prokMSA_id:041449 AY015427 Actinopolyspora indiensis 2.30.1.12.3.013 OTU 1 seq prokMSA_id:045443 AF131489 Saccharopolyspora sp. IM-8110 2.30.1.12.3.014 OTU 1 seq prokMSA_id:050663 AF131491 Saccharopolyspora sp. IM-8155 2.30.1.12.3.999 poor quality 24 seqs prokMSA_id:035324 AF064978 Saccharopolyspora sp. 'CIBE A15' prokMSA_id:020631 AF064979 Saccharopolyspora sp. 'CIBE C21' prokMSA_id:021948 AF064980 Saccharopolyspora sp. 'CIBE E10' prokMSA_id:021911 AF064981 Saccharopolyspora sp. 'CIBE H3' prokMSA_id:050248 AF064983 Saccharopolyspora sp. 'CIBE E20' 3' end prokMSA_id:040053 AH006993 Saccharopolyspora sp. 'CIBE E20' and genes prokMSA_id:071916 AJ251949 clone Hb5K3 prokMSA_id:016563 AJ251953 clone Hb5K44 prokMSA_id:027136 AJ251954 clone Hb5K48 prokMSA_id:044793 AJ251955 clone Hb5K49 prokMSA_id:023673 AJ298586 Hbr-K9 prokMSA_id:049038 AJ400544 clone Hb3-K24 prokMSA_id:045546 AJ400547 clone Hb3-K35 prokMSA_id:082571 AY214733 Gemmatimonadetes clone BB-1-H6 prokMSA_id:012939 M20387 Saccharopolyspora rectivirgula. prokMSA_id:012953 M20388 Saccharopolyspora hirsuta subsp. hirsuta ATCC 27875 . prokMSA_id:012948 X53194 Saccharopolyspora rectivirgula ATCC 33515 . prokMSA_id:012946 X53196 Saccharopolyspora hirsuta subsp. hirsuta ATCC 27875 . prokMSA_id:012954 X53197 Saccharopolyspora hordei str. A54 ATCC 49856 . prokMSA_id:012949 X53198 Saccharopolyspora erythraea str. M5-12259 NRRL 2338 . prokMSA_id:012951 X54287 Actinopolyspora halophila ATCC 27976 . prokMSA_id:012938 X76962 Saccharopolyspora gregorii str. A85 NCIMB 12823 . prokMSA_id:012945 X76967 Saccharopolyspora sp. str. A215. prokMSA_id:012947 Y09571 Saccharopolyspora spinosporotrichia str. AS4.198 DSM 44350 . 2.30.1.12.4 SCT.AUSTRALIENSIS_SUBGROUP 117 seqs 2.30.1.12.4.002 OTU 1 seq prokMSA_id:012995 AF114799 Actinokineospora inagensis NRRL B-24050. 2.30.1.12.4.003 OTU 1 seq prokMSA_id:012994 AF114802 Actinokineospora riparia NRRL B-16432. 2.30.1.12.4.004 OTU 1 seq prokMSA_id:012992 X70429 Kutzneria viridogrisea DSM 43850 . 2.30.1.12.4.005 OTU 1 seq prokMSA_id:012990 AB006178 Actinoalloteichus cyanogriseus IFO 14455. 2.30.1.12.4.006 OTU 1 seq prokMSA_id:012989 AF114801 Kutzneria kofuensis NRRL B-24061. 2.30.1.12.4.008 OTU 1 seq prokMSA_id:012987 U58530 Kutzneria viridogrisea JCM 3282 . 2.30.1.12.4.009 OTU 2 seqs prokMSA_id:012986 D85475 Actinosynnema mirum IFO 14064 . prokMSA_id:070383 D85475 Actinosynnema mirum strain IFO14064 2.30.1.12.4.011 OTU 1 seq prokMSA_id:012984 AB020031 Saccharothrix tangerinus str. MK27-91F2. 2.30.1.12.4.012 OTU 1 seq prokMSA_id:012980 AF183956 Saccharothrixopsis albidus str. AS4.0423. 2.30.1.12.4.014 OTU 5 seqs prokMSA_id:035192 AB048863 Actinokineospora sp. YU 873-1 prokMSA_id:040462 AB058394 Actinokineospora terrae prokMSA_id:045191 AB058396 Actinokineospora auranticolor prokMSA_id:012979 AF114797 Actinokineospora diospyrosa NRRL B-24047. prokMSA_id:012996 AF114798 Actinokineospora globicatena NRRL B-24048. 2.30.1.12.4.015 OTU 1 seq prokMSA_id:012978 AF114800 Actinosynnema pretiosum subsp. pretiosum NRRL B-16060. 2.30.1.12.4.016 OTU 2 seqs prokMSA_id:012975 AF114809 Saccharothrix longispora NRRL B-116116. prokMSA_id:087357 AY278910 Actinosynnema mirum 2.30.1.12.4.019 OTU 23 seqs prokMSA_id:012960 AF114803 Saccharothrix australiensis str. LL-BM782Ce8 NRRL 11239. prokMSA_id:012963 AF114805 Saccharothrix coeruleofusca NRRL B-16115. prokMSA_id:012959 AF114807 Saccharothrix espanaensis NRRL 15764. prokMSA_id:012974 AF114810 Saccharothrix NRRL B-16108 NRRL B-16108. prokMSA_id:012958 AF114811 Saccharothrix NRRL B-16133 NRRL B-16133. prokMSA_id:012973 AF114812 Saccharothrix syringae NRRL B-16468. prokMSA_id:012971 AF114814 Saccharothrix texasensis NRRL B-16134. prokMSA_id:012970 AF114815 Saccharothrix texasensis NRRL B-16107. prokMSA_id:051370 AF131492 Saccharothrix sp. IM-0212-2 prokMSA_id:071761 AF328411 Saccharothrix sp. 98-05-041A complete prokMSA_id:070891 AF328412 Saccharothrix sp. 99-08-221A complete prokMSA_id:070369 AF328413 Saccharothrix sp. 99-08-222A complete prokMSA_id:073943 AF328414 Saccharothrix sp. 99-08-236A complete prokMSA_id:063696 AF328415 Saccharothrix sp. 98-10-099A complete prokMSA_id:063695 AF328416 Saccharothrix sp. 98-41-143A complete prokMSA_id:063694 AF328417 Saccharothrix sp. 98-41-338A complete prokMSA_id:063693 AF328418 Saccharothrix sp. 98-41-281A complete prokMSA_id:050409 AF350247 Saccharothrix texasensis strain AS4.1186 prokMSA_id:069794 AF361323 Saccharothrix sp. 99-08-211A complete prokMSA_id:071267 AF361324 Saccharothrix sp. 99-08-243A complete prokMSA_id:060450 AY054972 Saccharothrix algeriensis prokMSA_id:012957 X53192 Saccharothrix australiensis str. LL-BM782Ce8 ATCC 31497 . prokMSA_id:028213 X53193 Saccharothrix australiensis 2.30.1.12.4.024 OTU 21 seqs prokMSA_id:012981 AB006176 Asiosporangium albidum IFO 16102. prokMSA_id:012982 AB020029 Saccharothrix waywayandensis JCM 9114. prokMSA_id:012983 AB020030 Saccharothrix aerocolonigenes subsp. aerocolonigenes ISP 5034. prokMSA_id:012985 AB024287 Saccharothrix aerocolonigenes subsp. staurosporea JCM 9734. prokMSA_id:012977 AF114804 Saccharothrix aerocolonigenes NRRL B-3298. prokMSA_id:012976 AF114808 Saccharothrix flava NRRL B-16131. prokMSA_id:012972 AF114813 Saccharothrix waywayandensis NRRL B-16159. prokMSA_id:033070 AF174435 Saccharothrix aerocolonigenes strain NRRL B-16137 prokMSA_id:025805 AF174436 Saccharothrix aerocolonigenes strain NRRL B-16139 prokMSA_id:012967 AF183957 Lentzea flavoverrucosus prokMSA_id:012968 AF183958 unnamed organism. prokMSA_id:063757 AF521642 Lentzea longissima prokMSA_id:046572 AJ242633 Saccharothrix violacea strain LM 036T prokMSA_id:030376 AJ242634 Saccharothrix violacea strain LM 044 prokMSA_id:063345 AY114176 Lentzea flaviverrucosa strain AS 4.0463 prokMSA_id:063557 AY117436 Lentzea albida strain 37-28 prokMSA_id:063556 AY117437 Lentzea albida strain 45-22 prokMSA_id:098572 AY186078 clone EACUL1E6 small subunit prokMSA_id:081131 AY196703 Lechevalieria aerocolonigenes strain VK-A9 prokMSA_id:012965 X84321 Lentzea albidocapillata str. IMMIB D-958 DSM 44073 . prokMSA_id:012966 Y09158 Lentzea koreensis str. LM 121T =IMSNU 50711T. 2.30.1.12.4.025 OTU 1 seq prokMSA_id:020152 AF142912 ORGANIC-10 2.30.1.12.4.026 OTU 2 seqs prokMSA_id:020703 AJ400710 Amycolatopsis fastidiosa strain IMSNU 20054T prokMSA_id:096538 AY389140 Amycolatopsis fastidiosa AS 4.1172 2.30.1.12.4.029 OTU 1 seq prokMSA_id:033829 AB058395 Actinokineospora enzanensis 2.30.1.12.4.030 OTU 1 seq prokMSA_id:064354 AY113686 Lentzea sp. YM-11 2.30.1.12.4.032 OTU 7 seqs prokMSA_id:012988 AF114806 NRRL B-16238. prokMSA_id:025539 AF131493 Saccharothrix sp. IM-5978 prokMSA_id:043430 AF131497 Streptoalloteichus sp. IM-0154 prokMSA_id:039062 AF131498 Streptoalloteichus sp. IM-0911 prokMSA_id:047834 AF131499 Streptoalloteichus sp. IM-5630 prokMSA_id:041579 AF245017 Crossiella equi prokMSA_id:063692 AF361325 Saccharothrix sp. 99-10-550A complete 2.30.1.12.4.033 OTU 1 seq prokMSA_id:057772 AJ512462 Kibdelosporangium albatum strain DSM 44149T 2.30.1.12.4.034 OTU 1 seq prokMSA_id:057769 AJ512464 Kibdelosporangium philippinense strain DSM 44226T 2.30.1.12.4.035 OTU 1 seq prokMSA_id:047825 AB048864 Actinokineospora sp. YU 923-201 2.30.1.12.4.036 OTU 1 seq prokMSA_id:060437 AY135693 Saccharothrix sp. AS 4.1731 2.30.1.12.4.038 OTU 3 seqs prokMSA_id:030103 AF131351 Actinosynnema sp. IM-1402 prokMSA_id:063350 AY114175 Lechevalieria fradiae strain AS 4.0423 prokMSA_id:012969 X84447 Actinosynnema mirum DSM 43827 . 2.30.1.12.4.039 OTU 1 seq prokMSA_id:089337 AY331684 Actinoalloteichus alkalophilus 2.30.1.12.4.040 OTU 1 seq prokMSA_id:090217 AY328768 DSSD70 2.30.1.12.4.041 OTU 1 seq prokMSA_id:097400 AY186079 clone EACUL1F4 small subunit 2.30.1.12.4.999 poor quality 33 seqs prokMSA_id:028668 AB054894 Saccharothrix flava strain:1028 prokMSA_id:074799 AB054895 Saccharothrix flava strain:1036 prokMSA_id:098856 AB122775 Actinosynnema pretiosum subsp. auranticum prokMSA_id:096942 AB123420 Kibdelosporangium sp. 428G04 prokMSA_id:096607 AB123718 Kutzneria sp. 306G04 prokMSA_id:097180 AB123719 Saccharothrix sp. 306G05 prokMSA_id:023228 AF083597 Amazonian soil P2 prokMSA_id:048552 AF234045 #0319-23B1 prokMSA_id:037196 AF318045 Nocardia uniformis subsp. tsuyamanensis prokMSA_id:019791 AF318047 Actinosynnema mirum prokMSA_id:078831 AF543367 clone I prokMSA_id:055303 AF544307 actinobacterium isolate M11 prokMSA_id:078925 AF547038 392 prokMSA_id:078497 AF547050 347 prokMSA_id:036361 AJ005994 clone TBS1 prokMSA_id:071939 AJ400557 clone Hb6-K28 prokMSA_id:033434 AJ421130 clone C12-K40 prokMSA_id:020807 AJ421157 clone C6-K18 prokMSA_id:019469 AJ421159 clone C6-K26 prokMSA_id:028054 AJ421161 clone C7-K3 prokMSA_id:060127 AJ427637 actinomycete clone ACT-A3 prokMSA_id:084234 AJ555225 actinomycete clone AOF29 prokMSA_id:095431 AJ574930 Lechevalieria sp. 603 clone 603 prokMSA_id:062314 AY124398 actinobacterium clone ASc04 prokMSA_id:087631 AY278878 Saccharothrix texasensis isolate T2-11 prokMSA_id:087410 AY278899 Saccharothrix texasensis isolate T2-5 prokMSA_id:012991 D85497 Streptoalloteichus hindustanus IFO 15115. prokMSA_id:012961 M29282 Saccharothrix australiensis str. LL-BM782Ce8 ATCC 31497 . prokMSA_id:012993 X76953 Actinokineospora riparia IFO 14541 . prokMSA_id:012962 X76963 Saccharothrix coeruleofusca DSM 43679 . prokMSA_id:012964 X76964 Saccharothrix longispora DSM 43749 . prokMSA_id:012956 X76965 Saccharothrix mutabilis subsp. capreolus DSM 40225 . prokMSA_id:012955 X76966 Saccharothrix mutabilis subsp. mutabilis DSM 43853 . 2.30.1.12.5 AMY.ORIENTALIS_SUBGROUP 134 seqs 2.30.1.12.5.001 OTU 3 seqs prokMSA_id:063973 AF453717 Amycolatopsis sp. GY024 prokMSA_id:063970 AF466097 Amycolatopsis sp. GY142 prokMSA_id:013007 AJ000285 Amycolatopsis sp. str. NT202. 2.30.1.12.5.002 OTU 3 seqs prokMSA_id:013006 AF052390 Amycolatopsis thermoflava str. N1165. prokMSA_id:063969 AF466101 Amycolatopsis sp. GY307 prokMSA_id:027705 AJ249135 Amycolatopsis methanolica strain IMSNU 20055T 2.30.1.12.5.003 OTU 2 seqs prokMSA_id:013005 AF051343 Amycolatopsis sulphurea DSM 46092 . prokMSA_id:091887 AJ293756 Amycolatopsis sulphurea strain IMSNU 20060T 2.30.1.12.5.008 OTU 1 seq prokMSA_id:032724 AF222022 Amycolatopsis rubidus 2.30.1.12.5.009 OTU 1 seq prokMSA_id:035684 AJ252832 Amycolatopsis albidoflavus strain IMSNU 22139T 2.30.1.12.5.010 OTU 1 seq prokMSA_id:037332 AF223354 Amycolatopsis sacchari 2.30.1.12.5.013 OTU 1 seq prokMSA_id:047068 AF131352 Amycolatopsis sp. IM-1163 2.30.1.12.5.014 OTU 3 seqs prokMSA_id:070505 AB045862 Streptomyces lactamdurans prokMSA_id:049974 AF214482 Streptomyces lactamdurans prokMSA_id:054677 AJ243301 Nocardia lactamdurans and 23S genes and ITS1 2.30.1.12.5.015 OTU 63 seqs prokMSA_id:013002 AF051340 Amycolatopsis alba str. A83850 DSM 44262 . prokMSA_id:013003 AF051341 Amycolatopsis coloradensis NRRL 3218 . prokMSA_id:063976 AF453718 Amycolatopsis sp. GY051 prokMSA_id:063974 AF466092 Amycolatopsis sp. GY055 prokMSA_id:063972 AF466093 Amycolatopsis sp. GY073 prokMSA_id:063975 AF466094 Amycolatopsis sp. GY109 prokMSA_id:063971 AF466096 Amycolatopsis sp. GY124 prokMSA_id:063968 AF466098 Amycolatopsis sp. GY144 prokMSA_id:063967 AF466099 Amycolatopsis sp. GY208 prokMSA_id:055272 AF466100 Amycolatopsis sp. GY295 prokMSA_id:023414 AJ278496 Amycolatopsis keratinophila strain DSM 44409T prokMSA_id:091582 AJ293753 Amycolatopsis coloradensis strain MSNU 22096T prokMSA_id:091736 AJ293754 Amycolatopsis mediterranei strain IMSNU 20056T prokMSA_id:091198 AJ293755 Amycolatopsis orientalis strain IMSNU 20057T prokMSA_id:091993 AJ293757 Amycolatopsis tolypophorous strain IMSNU 20061T prokMSA_id:025029 AJ400709 Amycolatopsis azurea strain IMSNU 20053T prokMSA_id:023759 AJ400711 Amycolatopsis orientalis strain IMSNU 20058T prokMSA_id:051483 AJ421142 Amycolatopsis coloradensis strain DSM 44225T prokMSA_id:059492 AJ508236 Amycolatopsis japonica strain DSM 44213T prokMSA_id:055883 AJ508237 Amycolatopsis decaplanensis strain DSM 44594T prokMSA_id:059484 AJ508238 Amycolatopsis nogabecetica strain DSM 44586T prokMSA_id:059482 AJ508239 Amycolatopsis balhimycetica strain DSM 44591T prokMSA_id:059483 AJ508240 Amycolatopsis vancoresmycetica strain DSM 44592T prokMSA_id:059481 AJ508241 Amycolatopsis tolypophora strain DSM 44544T prokMSA_id:088764 AJ577997 Amycolatopsis orientalis subsp. lurida strain DSM 43134T prokMSA_id:067635 AY083603 Amycolatopsis mediterranei strain DSM 46095 prokMSA_id:067634 AY083604 Amycolatopsis mediterranei strain F1/24 prokMSA_id:063752 AY125600 Amycolatopsis mediterranei strain KCTC 1739T prokMSA_id:059978 AY129753 Amycolatopsis sp. GY048 prokMSA_id:059977 AY129754 Amycolatopsis sp. GY049 prokMSA_id:059975 AY129755 Amycolatopsis sp. GY052 prokMSA_id:055702 AY129756 Amycolatopsis sp. GY053 prokMSA_id:059976 AY129757 Amycolatopsis sp. GY056 prokMSA_id:059974 AY129758 Amycolatopsis sp. GY062 prokMSA_id:059971 AY129759 Amycolatopsis sp. GY064 prokMSA_id:059970 AY129760 Amycolatopsis sp. GY080 prokMSA_id:059969 AY129761 Amycolatopsis sp. GY091 prokMSA_id:059968 AY129762 Amycolatopsis sp. GY116 prokMSA_id:059964 AY129764 Amycolatopsis sp. GY211 prokMSA_id:059967 AY129765 Amycolatopsis sp. GY212 prokMSA_id:059966 AY129766 Amycolatopsis sp. GY246 prokMSA_id:059965 AY129767 Amycolatopsis sp. GY249 prokMSA_id:059963 AY129768 Amycolatopsis sp. GY248 prokMSA_id:059962 AY129769 Amycolatopsis sp. GY293 prokMSA_id:059960 AY129770 Amycolatopsis sp. GY269 prokMSA_id:059961 AY129771 Amycolatopsis sp. GY276 prokMSA_id:059959 AY129772 Amycolatopsis sp. GY286 prokMSA_id:059958 AY129773 Amycolatopsis sp. GY207 prokMSA_id:059957 AY129775 Amycolatopsis sp. GY122 prokMSA_id:055691 AY129776 Amycolatopsis sp. GY131 prokMSA_id:059956 AY129777 Amycolatopsis sp. GY311 prokMSA_id:079251 AY183356 Amycolatopsis pretoriensis prokMSA_id:079479 AY183357 Amycolatopsis kentuckyensis prokMSA_id:079423 AY183358 Amycolatopsis lexingtonensis prokMSA_id:079363 AY184424 Amycolatopsis mediterranei strain NRRL B-3240 prokMSA_id:085800 AY222826 Amycolatopsis sp. GY082 prokMSA_id:085299 AY222827 Amycolatopsis sp. GY125 prokMSA_id:082587 AY222829 Amycolatopsis sp. GY154 prokMSA_id:085001 AY222831 Amycolatopsis sp. GY179 prokMSA_id:085437 AY222833 Amycolatopsis sp. GY203 prokMSA_id:085854 AY222836 Amycolatopsis sp. GY299 prokMSA_id:088192 AY262825 Amycolatopsis plumensis prokMSA_id:012998 X77959 Amycolatopsis sp. str. MG 417. 2.30.1.12.5.016 OTU 1 seq prokMSA_id:059955 AY129774 Amycolatopsis sp. GY088 2.30.1.12.5.017 OTU 1 seq prokMSA_id:076577 AY154626 earthworm cast clone c276 2.30.1.12.5.999 poor quality 54 seqs prokMSA_id:012999 AB019221 Amycolatopsis sp. str. KT-s-9. prokMSA_id:042880 AB054898 Amycolatopsis sp. 1738 prokMSA_id:074597 AB054923 Amycolatopsis sp. 1012 prokMSA_id:096706 AB122823 Amycolatopsis sp. 384E03 prokMSA_id:098128 AB122842 Amycolatopsis sp. 384G07 prokMSA_id:096784 AB122844 Amycolatopsis sp. 384G10 prokMSA_id:096771 AB122846 Amycolatopsis sp. 384H01 prokMSA_id:095934 AB123103 Amycolatopsis sp. 415B02 prokMSA_id:095484 AB123672 Amycolatopsis sp. 306B10 prokMSA_id:096666 AB123685 Amycolatopsis sp. 306D01 prokMSA_id:096349 AB123689 Amycolatopsis sp. 306D05 prokMSA_id:097129 AB123707 Amycolatopsis sp. 306F02 prokMSA_id:095222 AB123709 Amycolatopsis sp. 306F04 prokMSA_id:095874 AB123715 Amycolatopsis sp. 306F12 prokMSA_id:096708 AB123831 Amycolatopsis sp. 313A10 prokMSA_id:097140 AB123832 Amycolatopsis sp. 313A11 prokMSA_id:096346 AB123905 Amycolatopsis sp. 313H06 prokMSA_id:098006 AB123909 Amycolatopsis sp. 313H11 prokMSA_id:097994 AB124079 Amycolatopsis sp. 322B11 prokMSA_id:096432 AB124082 Amycolatopsis sp. 322C02 prokMSA_id:095917 AB124125 Amycolatopsis sp. 322G03 prokMSA_id:096367 AB124128 Amycolatopsis sp. 322G07 prokMSA_id:098037 AB124194 Amycolatopsis sp. 331F05 prokMSA_id:095942 AB124212 Amycolatopsis sp. 331H01 prokMSA_id:097413 AB124331 Amycolatopsis sp. 337C09 prokMSA_id:097838 AB124332 Amycolatopsis sp. 337C10 prokMSA_id:097906 AB124338 Amycolatopsis sp. 337D04 prokMSA_id:098482 AB124380 Amycolatopsis sp. 337G12 prokMSA_id:095483 AB124393 Amycolatopsis sp. 340A07 prokMSA_id:096564 AB124410 Amycolatopsis sp. 340C02 prokMSA_id:096656 AB124411 Amycolatopsis sp. 340C03 prokMSA_id:098366 AB124412 Amycolatopsis sp. 340C05 prokMSA_id:097470 AB124414 Amycolatopsis sp. 340C07 prokMSA_id:095986 AB124418 Amycolatopsis sp. 340C11 prokMSA_id:098634 AB124419 Amycolatopsis sp. 340C12 prokMSA_id:098031 AB124420 Amycolatopsis sp. 340D01 prokMSA_id:095685 AB124421 Amycolatopsis sp. 340D02 prokMSA_id:095817 AB124422 Amycolatopsis sp. 340D03 prokMSA_id:098256 AB124423 Amycolatopsis sp. 340D04 prokMSA_id:097269 AB124425 Amycolatopsis sp. 340D06 prokMSA_id:097211 AB124459 Amycolatopsis sp. 340G10 prokMSA_id:089610 AF432647 clone N41.44PG prokMSA_id:090576 AF432649 clone S54.44PG prokMSA_id:057966 AF544284 actinobacterium isolate T28 prokMSA_id:057955 AF544298 actinobacterium isolate T04 prokMSA_id:066866 AY096146 clone F1-18 prokMSA_id:082793 AY222830 Amycolatopsis sp. GY173 prokMSA_id:013000 D86935 Amycolatopsis orientalis subsp. orientalis IFO 12806 . prokMSA_id:013001 X53199 Amycolatopsis azurea NRRL 11412 . prokMSA_id:013009 X53200 Amycolatopsis fastidiosa ATCC 31181 . prokMSA_id:013008 X54274 Amycolatopsis methanolica NCIMB 11946 . prokMSA_id:013004 X76957 Amycolatopsis mediterranei str. ME 83/973 ATCC 13685 . prokMSA_id:012997 X76958 Amycolatopsis orientalis subsp. orientalis DSM 40040 . prokMSA_id:072288 X91529 sp. clone group K14 2.30.1.12.6 SCM.VIRIDIS_SUBGROUP 51 seqs 2.30.1.12.6.001 OTU 1 seq prokMSA_id:013031 AF127524 Saccharomonospora guangxiensis str. str4. 2.30.1.12.6.003 OTU 1 seq prokMSA_id:013028 AJ241017 clone Sva0985. 2.30.1.12.6.004 OTU 1 seq prokMSA_id:013027 AF142968 clone TAYNAYA-20. 2.30.1.12.6.005 OTU 5 seqs prokMSA_id:043601 AF139879 Saccharomonospora glauca strain KCTC 9645 prokMSA_id:074805 AF139880 Saccharomonospora glauca strain KCTC 3673 prokMSA_id:013022 Z38003 Saccharomonospora glauca str. K169 DSM 43769 . prokMSA_id:013026 Z38004 Saccharomonospora glauca str. K202; J-S.Ruan 350. prokMSA_id:013015 Z38006 Saccharomonospora glauca str. SB-37. 2.30.1.12.6.007 OTU 9 seqs prokMSA_id:028485 AJ306300 Saccharomonospora xinjiangensis strain DSM 44391T prokMSA_id:081456 AY224197 Saccharomonospora sp. PAN A5 prokMSA_id:013030 Z38017 Saccharomonospora azurea str. K161; NA128 . prokMSA_id:013024 Z38018 Saccharomonospora cyanea str. K168; NA134 . prokMSA_id:013029 Z38019 Saccharomonospora caesia str. K163 DSM 43068. prokMSA_id:013010 Z38020 Saccharomonospora sp. str. K180; 30Urbakt. prokMSA_id:013011 Z38022 Saccharomonospora caesia str. SB-01. prokMSA_id:013014 Z38023 Saccharomonospora caesia str. SB-22. prokMSA_id:013023 Z38024 Saccharomonospora caesia str. SB-58. 2.30.1.12.6.008 OTU 5 seqs prokMSA_id:013020 AF127525 Saccharomonospora thermoviridis str. str22.1. prokMSA_id:063751 AY114168 Saccharomonospora viridis strain RVH210302A prokMSA_id:013017 Z38005 Saccharomonospora viridis str. SB-33. prokMSA_id:013019 Z38007 Saccharomonospora viridis str. K73 NCIMB 9602 . prokMSA_id:013013 Z38021 Saccharomonospora viridis str. K191; Greiner-Mai R25. 2.30.1.12.6.009 OTU 1 seq prokMSA_id:013016 AF051342 Prauserella rugosa DSM 43194 . 2.30.1.12.6.010 OTU 2 seqs prokMSA_id:017556 AF435077 Prauserella salina prokMSA_id:045408 AF466190 Prauserella sp. 1009326338-17914-11126 2.30.1.12.6.011 OTU 1 seq prokMSA_id:018682 AF328202 clone KS65 2.30.1.12.6.012 OTU 1 seq prokMSA_id:019135 AJ278497 Saccharomonospora halophila strain DSM 44411T 2.30.1.12.6.013 OTU 3 seqs prokMSA_id:050134 AF424422 actinobacterium MERTZ_2CM_348 prokMSA_id:048844 AF424424 actinobacterium MERTZ_0CM_320 prokMSA_id:026772 AF424427 actinobacterium MERTZ_21CM_154 2.30.1.12.6.014 OTU 1 seq prokMSA_id:059820 AY133369 clone OB3_78 2.30.1.12.6.015 OTU 1 seq prokMSA_id:079434 AB099989 sequences clone: IheB3-34 2.30.1.12.6.999 poor quality 19 seqs prokMSA_id:068641 AB081816 seuence clone:A-09 prokMSA_id:013012 AF056710 Saccharomonospora xinjiangensis str. XJ-54 CCTCC AA97021 . prokMSA_id:059268 AF540959 Saccharomonospora asparaginophila prokMSA_id:049469 AJ270373 Saccharomonospora sp. 12-82 isolate 12-82 prokMSA_id:032478 AJ270374 Saccharomonospora sp. 02-103 isolate 02-103 prokMSA_id:048273 AJ270375 Saccharomonospora sp. 42-146 isolate 42-146 prokMSA_id:074670 AJ270376 Saccharomonospora sp. 42-147 isolate 42-147 prokMSA_id:048477 AJ270377 Saccharomonospora sp. 42-157 isolate 42-157 prokMSA_id:027965 AJ270379 Saccharomonospora sp. 42-162 isolate 42-162 prokMSA_id:031436 AJ270380 Saccharomonospora sp. 42-17 isolate 42-17 prokMSA_id:043130 AJ270381 Saccharomonospora sp. 42-182 isolate 42-182 prokMSA_id:030591 AJ270382 Saccharomonospora sp. 42-187 isolate 42-187 prokMSA_id:027476 AJ270385 Saccharomonospora sp. 42-27 isolate 42-27 prokMSA_id:025388 AJ270386 Saccharomonospora sp. 42-78 isolate 42-78 prokMSA_id:035694 AJ270387 Saccharomonospora sp. 42-82 isolate 42-82 prokMSA_id:028904 AJ270388 Saccharomonospora sp. 42-86 isolate 42-86 prokMSA_id:013021 X54286 Saccharomonospora viridis ATCC 15386 . prokMSA_id:013025 X76960 Saccharomonospora caesia INMI 19125 . prokMSA_id:013018 X76961 Saccharomonospora sp. str. A1206. 2.30.1.13 MYCOBACTERIUM_SUBDIVISION 2508 seqs 2.30.1.13.1 MYCOBACTERIA_GROUP 1089 seqs 2.30.1.13.1.1 MYB.TUBERCULOSIS_SUBGROUP 1037 seqs 2.30.1.13.1.1.001 OTU 1 seq prokMSA_id:013266 NONE Mycobacterium tuberculosis str. H37/Rv. 2.30.1.13.1.1.006 OTU 2 seqs prokMSA_id:013187 X65528 Mycobacterium fortuitum. prokMSA_id:013256 X65529 Mycobacterium fortuitum. 2.30.1.13.1.1.016 OTU 2 seqs prokMSA_id:013232 NONE Mycobacterium avium subsp. avium str. chester DSM 43216. prokMSA_id:013082 NONE Mycobacterium intracellulare str. serovar 4 ATCC 35767. 2.30.1.13.1.1.020 OTU 2 seqs prokMSA_id:018116 AF480574 Mycobacterium branderi prokMSA_id:013228 X82234 Mycobacterium branderi str. H 52157 ATCC 51789 . 2.30.1.13.1.1.026 OTU 1 seq prokMSA_id:013223 AF142816 Mycobacterium ACE-41. 2.30.1.13.1.1.027 OTU 5 seqs prokMSA_id:070429 AJ416914 Mycobacterium celatum strain MB72 prokMSA_id:077688 AJ536040 Mycobacterium celatum prokMSA_id:013224 L08169 Mycobacterium celatum ATCC 51131 . prokMSA_id:013104 L08170 Mycobacterium celatum ATCC 51130. prokMSA_id:013086 Z46664 Mycobacterium celatum str. 3 NCTC 12882. 2.30.1.13.1.1.028 OTU 1 seq prokMSA_id:013222 AF142949 Mycobacterium PENDANT-38. 2.30.1.13.1.1.031 OTU 1 seq prokMSA_id:013218 Z50172 Mycobacterium tilburgii. 2.30.1.13.1.1.047 OTU 1 seq prokMSA_id:013166 Z73380 clone Ep_T1.252. 2.30.1.13.1.1.048 OTU 1 seq prokMSA_id:013153 X88917 Mycobacterium sp. str. IWGMT 90247. 2.30.1.13.1.1.049 OTU 1 seq prokMSA_id:013151 X55602 Mycobacterium thermoresistibile ATCC 19527 . 2.30.1.13.1.1.055 OTU 1 seq prokMSA_id:013140 X88924 Mycobacterium triviale ATCC 23292 . 2.30.1.13.1.1.060 OTU 1 seq prokMSA_id:013130 AF145831 clone K20-33. 2.30.1.13.1.1.061 OTU 1 seq prokMSA_id:013127 Z26917 Mycobacterium sp. 2.30.1.13.1.1.066 OTU 1 seq prokMSA_id:013115 U65104 Mycobacterium sp. 2.30.1.13.1.1.071 OTU 2 seqs prokMSA_id:013070 AF000225 Mycobacterium buckleii. prokMSA_id:013069 U49401 Mycobacterium hassiacum. 2.30.1.13.1.1.079 OTU 1 seq prokMSA_id:070047 AJ277836 ARFS-3 2.30.1.13.1.1.085 OTU 2 seqs prokMSA_id:074060 AY012578 Mycobacterium fortuitum subsp. pseudoperegrinum strain ATCC 35755 prokMSA_id:071931 AY012582 Mycobacterium porcinum strain W6243 2.30.1.13.1.1.087 OTU 8 seqs prokMSA_id:027854 AF101243 Mycobacterium sydneyiensis prokMSA_id:032230 AF174290 Mycobacterium heckeshornense prokMSA_id:013236 AJ012756 Mycobacterium botniense str. E347. prokMSA_id:039844 AJ243481 Mycobacterium cf. xenopi 'Hymi_Wue Tb_939/99' prokMSA_id:078273 AJ536033 Mycobacterium xenopi prokMSA_id:068389 AY082373 Mycobacterium xenopi prokMSA_id:013162 M61664 Mycobacterium xenopi ATCC 19250 . prokMSA_id:013235 X52929 Mycobacterium xenopi ATCC 19250 . 2.30.1.13.1.1.094 OTU 379 seqs prokMSA_id:086938 AB009578 Mycobacterium sp. PP1 strain:RP1 prokMSA_id:087944 AB009579 Mycobacterium sp. FM30 strain:FM30 prokMSA_id:087291 AB009580 Mycobacterium sp. BM04 strain:BM04 prokMSA_id:086892 AB009581 Mycobacterium sp. BM01 strain:BM01 prokMSA_id:086745 AB009582 Mycobacterium sp. LM20 strain:LM20 prokMSA_id:087205 AB009583 Mycobacterium sp. LM32 strain:LM32 prokMSA_id:087349 AB009584 Mycobacterium sp. FM10 strain:FM10 prokMSA_id:088025 AB009585 Mycobacterium sp. BM06 strain:BM06 prokMSA_id:087035 AB009586 Mycobacterium sp. BM05 strain:BM05 prokMSA_id:087216 AB009587 Mycobacterium sp. LM40 strain:LM40 prokMSA_id:013185 AB010910 Mycobacterium sp. str. SRB1151-113. prokMSA_id:013099 AB010912 Mycobacterium sp. str. SRB1948-E04. prokMSA_id:013192 AB023372 Mycobacterium IFO16251 IFO 16251. prokMSA_id:033066 AB028482 Mycobacterium sp. TA27 prokMSA_id:039806 AB028483 Mycobacterium sp. TA5 prokMSA_id:074742 AB035741 Mycobacterium sp. MU99402 prokMSA_id:019717 AB074710 Actinobacterium S-A1-8A prokMSA_id:066122 AB074889 Mycobacterium sp. 9912 prokMSA_id:013205 AF014935 Mycobacterium interjectum str. patient 1. prokMSA_id:013206 AF014936 Mycobacterium interjectum str. patient 2. prokMSA_id:013207 AF014937 Mycobacterium interjectum str. patient 3. prokMSA_id:013226 AF016407 Mycobacterium IMVS B76676 IMVS B76676. prokMSA_id:013183 AF023664 Mycobacterium alvei str. CR-21 CIP 103464 . prokMSA_id:013184 AF054278 Mycobacterium CH-1 str. CH-1. prokMSA_id:013118 AF055331 Mycobacterium ratisbonense. prokMSA_id:013194 AF055332 Mycobacterium M0183 str. M0183. prokMSA_id:013114 AF055333 Mycobacterium farcinogenes ATCC 35753 . prokMSA_id:013076 AF058299 Mycobacterium FI-25796 str. FI-25796. prokMSA_id:013251 AF058712 Mycobacterium peregrinum str. Schering 20 ATCC 14467 . prokMSA_id:013150 AF107039 Mycobacterium monacense str. B9-21-178. prokMSA_id:018390 AF111809 Mycobacterium septicum prokMSA_id:041798 AF130308 Mycobacterium peregrinum prokMSA_id:038495 AF133902 Mycobacterium kubicae prokMSA_id:036394 AF150708 Elbe River snow isolate Iso37neu prokMSA_id:013119 AF152558 Mycobacterium n. sp. 'Fuerth 1999' str. 01.22.181. prokMSA_id:013042 AF152559 Mycobacterium 'MCRO 33' str. MCRO 33. prokMSA_id:013079 AF152560 Mycobacterium malmoense str. RV423C. prokMSA_id:013158 AF165182 Mycobacterium C2-3 str. C2-3. prokMSA_id:072204 AF174289 Mycobacterium flavescens prokMSA_id:013096 AF190800 str. IFP2173. prokMSA_id:018959 AF217192 Mycobacterium sp. 'Sydney 2453' prokMSA_id:047182 AF221084 Mycobacterium sp. isolate JKD2379 prokMSA_id:048858 AF221085 Mycobacterium sp. isolate JKD2380 prokMSA_id:030377 AF221086 Mycobacterium sp. isolate JKD2381 prokMSA_id:046005 AF221087 Mycobacterium sp. isolate JKD2384 prokMSA_id:040764 AF221088 Mycobacterium sp. isolate JKD2385 prokMSA_id:045744 AF221089 Mycobacterium sp. isolate JKD2386 prokMSA_id:041162 AF221090 Mycobacterium sp. isolate JKD2387 prokMSA_id:028577 AF221091 Mycobacterium sp. isolate JKD2388 prokMSA_id:016921 AF221092 Mycobacterium sp. isolate JKD2389 prokMSA_id:036113 AF221093 Mycobacterium sp. isolate JKD2390 prokMSA_id:074656 AF221094 Mycobacterium sp. isolate JKD2391 prokMSA_id:032734 AF236827 Mycobacterium sp. STR-1 prokMSA_id:023006 AF236828 Mycobacterium sp. STR-2 prokMSA_id:074570 AF236829 Mycobacterium sp. STR-3 prokMSA_id:031032 AF236830 Mycobacterium sp. STR-4 prokMSA_id:033329 AF236831 Mycobacterium sp. STR-9 prokMSA_id:019690 AF236832 Mycobacterium sp. STR-6 prokMSA_id:039248 AF236833 Mycobacterium sp. STR-7 prokMSA_id:048035 AF236834 Mycobacterium sp. STR-8 prokMSA_id:018758 AF236835 Mycobacterium sp. STR-19 prokMSA_id:021012 AF236836 Mycobacterium sp. STR-17 prokMSA_id:054337 AF236837 Mycobacterium sp. STR-21 prokMSA_id:074404 AF236838 Mycobacterium sp. STR-11 prokMSA_id:030700 AF236839 Mycobacterium sp. STR-12 prokMSA_id:039354 AF236840 Mycobacterium sp. STR-13 prokMSA_id:022256 AF236841 Mycobacterium sp. STR-18 prokMSA_id:022237 AF247497 Mycobacterium sp. SM7.6.1 prokMSA_id:050858 AF251565 Mycobacterium marinum prokMSA_id:071298 AF264700 Mycobacterium doricum prokMSA_id:030438 AF268445 Mycobacterium neoaurum prokMSA_id:032619 AF284430 Mycobacterium sp. ESD prokMSA_id:019386 AF306455 Mycobacterium avium prokMSA_id:042486 AF316618 Mycobacterium fuerth prokMSA_id:066700 AF367025 Mycobacterium malmoense ; internal transcribed spacer complete ; and 23S prokMSA_id:027836 AF385898 Mycobacterium elephantis prokMSA_id:020317 AF387803 Mycobacterium sp. MCS prokMSA_id:023135 AF387804 Mycobacterium sp. JLS prokMSA_id:018950 AF406783 Mycobacterium lacus prokMSA_id:064868 AF410479 Mycobacterium avium Myc373 -23S internal transcribed spacer complete ; and 23S prokMSA_id:032952 AF418956 clone HTDD3 prokMSA_id:034657 AF448435 Mycobacterium sp. MEU-1 prokMSA_id:069678 AF456238 Mycobacterium marinum strain eilaticum DL240490 prokMSA_id:069661 AF456239 Mycobacterium marinum strain cyprinum CC240299 prokMSA_id:069220 AF456240 Mycobacterium marinum strain ATCC 927 prokMSA_id:072489 AF456241 Mycobacterium marinum strain hellenicum DL045 prokMSA_id:069729 AF456242 Mycobacterium sp. 'graecum DL049' prokMSA_id:038174 AF466821 Mycobacterium parmense complete prokMSA_id:068741 AF479359 Glacial ice SB12K-2-16 prokMSA_id:021089 AF480575 Mycobacterium acapulcensis prokMSA_id:034222 AF480576 Mycobacterium brumae prokMSA_id:042140 AF480577 Mycobacterium engbaekii prokMSA_id:025000 AF480578 Mycobacterium flavescens strain ATCC 23008 prokMSA_id:036933 AF480579 Mycobacterium flavescens strain ATCC 23033 prokMSA_id:028402 AF480580 Mycobacterium fortuitum strain ATCC 49403 prokMSA_id:047184 AF480581 Mycobacterium fortuitum strain ATCC 49404 prokMSA_id:028954 AF480582 Mycobacterium lacticola prokMSA_id:028531 AF480583 Mycobacterium lentiflavum prokMSA_id:052725 AF480584 Mycobacterium microti prokMSA_id:049558 AF480585 Mycobacterium mucogenicum strain ATCC 49649 prokMSA_id:028701 AF480586 Mycobacterium mucogenicum strain ATCC 49650 prokMSA_id:073949 AF480587 Mycobacterium petroleophilum prokMSA_id:045568 AF480588 Mycobacterium porcinum prokMSA_id:070152 AF480589 Mycobacterium poriferae prokMSA_id:032288 AF480590 Mycobacterium tokaiense prokMSA_id:023360 AF480591 Mycobacterium vaccae prokMSA_id:019458 AF480592 Mycobacterium abscessus prokMSA_id:020364 AF480593 Mycobacterium neoaurum prokMSA_id:033483 AF480594 Mycobacterium chelonae prokMSA_id:031828 AF480595 Mycobacterium asiaticum prokMSA_id:043972 AF480596 Mycobacterium senegalense prokMSA_id:022210 AF480597 Mycobacterium chubuense prokMSA_id:036821 AF480598 Mycobacterium cookii prokMSA_id:030995 AF480599 Mycobacterium diernhoferi prokMSA_id:072357 AF480600 Mycobacterium fallax prokMSA_id:037486 AF480601 Mycobacterium kansasii prokMSA_id:019621 AF480602 Mycobacterium gastri prokMSA_id:023960 AF480603 Mycobacterium phlei prokMSA_id:038629 AF480604 Mycobacterium scrofulaceum prokMSA_id:032152 AF480605 Mycobacterium africanum prokMSA_id:086633 AF491284 Mycobacterium sp. Myc399 ; intergenic spacer complete ; and 23S prokMSA_id:067346 AF494537 Mycobacterium sp. BPC5 prokMSA_id:060765 AF498650 Mycobacterium rhodesiae strain JS60 prokMSA_id:070827 AF498656 Mycobacterium aichiense strain JS618 prokMSA_id:074381 AF498659 Mycobacterium sp. JS621 prokMSA_id:066586 AF502574 Mycobacterium pinnipedii prokMSA_id:065316 AF513815 Mycobacterium goodii strain X7B prokMSA_id:088845 AF537362 Mycobacterium peregrinum strain RE21 prokMSA_id:085394 AF541924 Mycobacterium sp. YM12 prokMSA_id:058279 AF544622 Mycobacterium austroafricanum isolate VM0456 complete prokMSA_id:070204 AF544623 Mycobacterium austroafricanum isolate VM0450 complete prokMSA_id:074074 AF544624 Mycobacterium austroafricanum isolate VM0451 complete prokMSA_id:058277 AF544625 Mycobacterium austroafricanum isolate VM0447 complete prokMSA_id:058276 AF544626 Mycobacterium austroafricanum isolate VM0452 complete prokMSA_id:058274 AF544627 Mycobacterium austroafricanum isolate VM0573 complete prokMSA_id:058273 AF544628 Mycobacterium frederiksbergense isolate VM0503 complete prokMSA_id:058269 AF544633 Mycobacterium gilvum isolate VM0505 complete prokMSA_id:058267 AF544634 Mycobacterium gilvum isolate VM0504 complete prokMSA_id:058268 AF544635 Mycobacterium gilvum isolate VM0552 complete prokMSA_id:058265 AF544636 Mycobacterium gilvum isolate VM0442 complete prokMSA_id:058266 AF544637 Mycobacterium gilvum isolate VM0583 complete prokMSA_id:058263 AF544638 Mycobacterium vaccae isolate VM0587 complete prokMSA_id:058264 AF544639 Mycobacterium vaccae isolate VM0588 complete prokMSA_id:013040 AJ000684 Mycobacterium heidelbergense str. 2554/91 ATCC 51253 . prokMSA_id:045075 AJ001220 Mycobacterial columbarii prokMSA_id:013055 AJ005005 Mycobacterium shimoidei ATCC 27962 . prokMSA_id:013186 AJ007009 Mycobacterium sp. str. LAB2. prokMSA_id:013146 AJ010747 Mycobacterium elephantis. prokMSA_id:013254 AJ011335 Mycobacterium mageritense str. 1336. prokMSA_id:013193 AJ011510 Mycobacterium sp. str. DhA-55. prokMSA_id:013116 AJ011771 Mycobacterium immunogen str. MN 3744. prokMSA_id:013075 AJ012626 Mycobacterium sp. str. GP1. prokMSA_id:013160 AJ012738 Mycobacterium HE5 str. HE5. prokMSA_id:013178 AJ131120 Mycobacterium tuberculosis subsp. caprae str. gM-1. prokMSA_id:013248 AJ131761 Mycobacterium smegmatis ATCC 19420 . prokMSA_id:073637 AJ245702 Mycobacterium sp. strain LB501T prokMSA_id:048549 AJ245703 Mycobacterium sp. strain LB307T prokMSA_id:032286 AJ245704 Mycobacterium sp. strain LB208 prokMSA_id:019289 AJ271863 Mycobacterium ratisbonense strain SD4 prokMSA_id:030291 AJ272088 Mycobacterium interjectum isolate MB739 prokMSA_id:046211 AJ276274 Mycobacterium frederiksbergense strain DSM 44346 prokMSA_id:053023 AJ276890 Mycobacterium cf. triplex 'isolate 23' and internal transcribed spacer 1 ITS1 prokMSA_id:052968 AJ277283 Mycobacterium bohemicum and internal transcribed spacer 1 ITS1 strain E590 prokMSA_id:054160 AJ277284 Mycobacterium bohemicum and internal transcribed spacer 1 ITS1 strain E743 prokMSA_id:070701 AJ306570 Mycobacterium africanum isolate MB874 010/835 prokMSA_id:054449 AJ308603 Mycobacterium palustre and internal transcribed spacer 1 ITS1 strain E846 prokMSA_id:027078 AJ310467 Mycobacterium holsaticum strain 1406 prokMSA_id:023238 AJ416909 Mycobacterium septicum strain MB804 prokMSA_id:026463 AJ416910 Mycobacterium fortuitum strain MB44 prokMSA_id:050846 AJ416911 Mycobacterium sp. MB65 strain MB65 prokMSA_id:017299 AJ416913 Mycobacterium sp. MB69 strain MB69 prokMSA_id:048527 AJ416915 Mycobacterium fortuitum strain MB935 prokMSA_id:037469 AJ416939 Mycobacterium chelonae strain MB300 prokMSA_id:029667 AJ416940 Mycobacterium abscessus strain MB849 prokMSA_id:073622 AJ416941 Mycobacterium chelonae strain MB834 prokMSA_id:042323 AJ419968 Mycobacterium chelonae strain ITG 96-0295 prokMSA_id:041214 AJ419969 Mycobacterium chelonae strain ITG 95-0026 prokMSA_id:032018 AJ419970 Mycobacterium abscessus strain ITG 98-1292 prokMSA_id:029962 AJ422046 Mycobacterium peregrinum strain ATCC14467 prokMSA_id:038808 AJ422047 Mycobacterium intracellulare isolate MB971 prokMSA_id:073821 AJ422048 Mycobacterium heidelbergense strain ITG 7971 MB43 prokMSA_id:025348 AJ429044 Mycobacterium moriokaense strain DSM 44221T prokMSA_id:028966 AJ429045 Mycobacterium agri strain DSM 44515T prokMSA_id:032216 AJ429046 Mycobacterium pulveris strain DSM 44222T prokMSA_id:038064 AJ429047 Mycobacterium rhodesiae strain DSM 44223T prokMSA_id:075651 AJ431371 Mycobacterium sp. DSM 44605 strain DSM 44605 prokMSA_id:067497 AJ441306 Mycobacterium sp. HXN100 prokMSA_id:067500 AJ441307 Mycobacterium fuerth strain HXN1000 prokMSA_id:067481 AJ457055 Mycobacterium septicum strain HXN500 prokMSA_id:067482 AJ457056 Mycobacterium septicum strain HXN1900 prokMSA_id:067483 AJ457057 Mycobacterium sp. HXN1500 strain HXN1500 prokMSA_id:058772 AJ509013 Mycobacterium sp. CF1 strain CF1 prokMSA_id:078549 AJ534886 Mycobacterium psychrotolerans strain WA101T prokMSA_id:078264 AJ536031 Mycobacterium tuberculosis prokMSA_id:077782 AJ536032 Mycobacterium marinum prokMSA_id:077825 AJ536035 Mycobacterium kansasii prokMSA_id:077589 AJ536036 Mycobacterium intracellulare prokMSA_id:077631 AJ536037 Mycobacterium avium subsp. avium prokMSA_id:078097 AJ536038 Mycobacterium abscessus prokMSA_id:078325 AJ536039 Mycobacterium fortuitum subsp. fortuitum prokMSA_id:077608 AJ536041 Mycobacterium smegmatis prokMSA_id:078351 AJ536042 Mycobacterium gordonae prokMSA_id:078035 AJ536100 Mycobacterium elephantis strain FI-13900 prokMSA_id:081784 AJ548480 Mycobacterium chimerae and ITS1 strain FI-0169T prokMSA_id:085375 AJ550515 Mycobacterium sp. SA394 and ITS1 isolate SA394 prokMSA_id:093004 AJ580826 Mycobacterium tilburgii prokMSA_id:092964 AJ581472 Mycobacterium gordonae strain agha3 prokMSA_id:031099 AR086358 1 from patent US 5985569 prokMSA_id:023068 AY005147 Mycobacterium sp. M175 prokMSA_id:030001 AY012573 Mycobacterium bonickei strain ATCC 49935 prokMSA_id:028739 AY012574 Mycobacterium porcinum strain ATCC BAA-328 prokMSA_id:025175 AY012575 Mycobacterium neworleansense strain ATCC 49404 prokMSA_id:025519 AY012576 Mycobacterium concordense strain ATCC BAA-329 prokMSA_id:073627 AY012577 Mycobacterium brisbanense strain ATCC 49938 prokMSA_id:022634 AY012579 Mycobacterium houstonense strain ATCC 49403 prokMSA_id:071981 AY012580 Mycobacterium porcinum strain ATCC 49939 prokMSA_id:071967 AY012581 Mycobacterium porcinum strain W6236 prokMSA_id:061373 AY043872 actinobacterium clone SMW4.128WL prokMSA_id:028341 AY065649 Mycobacterium sp. 2333 prokMSA_id:059294 AY082001 Mycobacterium manitobense ; and internal transcribed spacer 1 complete prokMSA_id:068650 AY083217 Mycobacterium sp. KMS prokMSA_id:086344 AY147261 Mycobacterium sp. DSM 3803 prokMSA_id:076087 AY154573 earthworm cast clone c211 prokMSA_id:069861 AY162028 Mycobacterium sp. JS623 prokMSA_id:070548 AY162029 Mycobacterium sp. JS624 prokMSA_id:077271 AY163334 Mycobacterium sp. IP20010510 prokMSA_id:077138 AY163335 Mycobacterium sp. IP20010516 prokMSA_id:075860 AY163336 Mycobacterium sp. IP20010531 prokMSA_id:076686 AY163337 Mycobacterium sp. IP20010660 prokMSA_id:075354 AY163338 Mycobacterium sp. IP20010664 prokMSA_id:075521 AY163339 Mycobacterium sp. IP20010718 prokMSA_id:075697 AY163340 Mycobacterium sp. IP20010947 prokMSA_id:076473 AY163341 Mycobacterium sp. IP20010961 prokMSA_id:078930 AY177352 Mycobacterium sp. I5 prokMSA_id:079404 AY184225 Mycobacterium sp. HSC 1852 prokMSA_id:079505 AY188086 Mycobacterium sp. NB01 prokMSA_id:081725 AY211074 Mycobacterium sp. clone VC17 prokMSA_id:083869 AY242618 soil clone Tc134-104 prokMSA_id:082657 AY242619 soil clone Tc134-105 prokMSA_id:084890 AY242620 soil clone Tc122-G08 prokMSA_id:084497 AY255478 Mycobacterium canariense strain 502329 prokMSA_id:084713 AY266138 Mycobacterium sp. TH-2003 prokMSA_id:089294 AY306204 Mycobacterium sp. HSC2034 prokMSA_id:090701 AY328725 DSSD26 prokMSA_id:091680 AY337273 Mycobacterium parascrofulaceum strain BAA-614 prokMSA_id:091979 AY337605 Mycobacterium sp. PX3.15 prokMSA_id:092637 AY345111 Mycobacterium sp. clone AndE/LB1 prokMSA_id:092661 AY345112 Mycobacterium sp. clone AndE/LB2 prokMSA_id:093084 AY345113 Mycobacterium sp. clone AndE/LB3 prokMSA_id:092437 AY345114 Mycobacterium sp. clone AndE/LB4 prokMSA_id:092889 AY345115 Mycobacterium sp. clone AndE/LB5 prokMSA_id:092211 AY345116 Mycobacterium sp. clone AndE/LB6 prokMSA_id:092548 AY345117 Mycobacterium sp. clone AndE/LB7 prokMSA_id:092061 AY345118 Mycobacterium sp. clone AndE/LB8 prokMSA_id:093149 AY345119 Mycobacterium sp. clone AndE/LB9 prokMSA_id:093989 AY351648 Mycobacterium sp. LC6 complete prokMSA_id:093107 AY353699 Mycobacterium sherrisii prokMSA_id:092711 AY360325 Mycobacterium sp. NIPHL130302 prokMSA_id:092162 AY360326 Mycobacterium asiaticum prokMSA_id:092593 AY360327 Mycobacterium abscessus prokMSA_id:092994 AY360328 Mycobacterium gordonae prokMSA_id:092729 AY360329 Mycobacterium avium prokMSA_id:092127 AY360330 Mycobacterium malmoense prokMSA_id:092923 AY360331 Mycobacterium bovis prokMSA_id:092991 AY360332 Mycobacterium sp. 030203A prokMSA_id:093212 AY368456 Mycobacterium nebraskiae complete prokMSA_id:013227 L24800 Mycobacterium haemophilum. prokMSA_id:013182 M20940 Mycobacterium bovis str. BCG. prokMSA_id:013233 M29568 Mycobacterium terrae str. W-45 ATCC 15755 . prokMSA_id:013072 M61681 Mycobacterium leprae. prokMSA_id:013039 M95488 Mycobacterium sp. prokMSA_id:042375 NC_000962 Mycobacterium tuberculosis H37Rv complete genome prokMSA_id:054279 NC_002755 Mycobacterium tuberculosis CDC1551 complete genome prokMSA_id:050546 U00014 Mycobacterium leprae cosmid B1549 prokMSA_id:013165 U06638 Mycobacterium haemophilum. prokMSA_id:013246 U15186 Mycobacterium leprae str. cosmid L471. prokMSA_id:013073 U30661 Mycobacterium sp. str. RJGll.135 Fast Growing Pyrene Degrader. prokMSA_id:013221 U30662 Mycobacterium sp. str. PYR-I Fast Growing PAH Degrader. prokMSA_id:013199 U46146 Mycobacterium sp. prokMSA_id:047839 U57632 Mycobacterium triplex prokMSA_id:013097 U62889 Mycobacterium T103 str. T103. prokMSA_id:013098 U62890 Mycobacterium T104 str. T104. prokMSA_id:013167 U84502 Mycobacterium bohemicum. prokMSA_id:013074 U90876 Mycobacterium RF002 str. RF002. prokMSA_id:013033 U90877 Mycobacterium WF2 str. WF2. prokMSA_id:043453 U92088 Mycobacterium marinum ATCC 927 prokMSA_id:030392 U92089 Mycobacterium fortuitum ATCC 6841 prokMSA_id:042388 U92090 Mycobacterium chelonae ATCC 14472 prokMSA_id:013145 U94745 Mycobacterium duvalii str. C-63 ATCC 43910 . prokMSA_id:013065 U96747 Mycobacterium novocastrense str. 73 DSM 44203 . prokMSA_id:013139 X15916 Mycobacterium kansasii str. SN 502 DSM 43224. prokMSA_id:013071 X52917 Mycobacterium tuberculosis str. H37/Rv. prokMSA_id:013133 X52918 Mycobacterium avium subsp. avium str. chester DSM 43216. prokMSA_id:013230 X52919 Mycobacterium gastri str. W-417 ATCC 15754 . prokMSA_id:013202 X52920 Mycobacterium marinum. prokMSA_id:013190 X52921 Mycobacterium chelonae ATCC 14472. prokMSA_id:013244 X52922 Mycobacterium smegmatis str. W-113 ATCC 14468. prokMSA_id:013085 X52925 Mycobacterium terrae str. W-45 ATCC 15755 . prokMSA_id:013152 X52927 Mycobacterium intracellulare str. SN 424 ATCC 15985. prokMSA_id:013197 X52928 Mycobacterium nonchromogenicum ATCC 19530 . prokMSA_id:013078 X52930 Mycobacterium malmoense str. Mo 816 ATCC 29571 . prokMSA_id:013050 X52933 Mycobacterium fortuitum subsp. fortuitum ATCC 6841 . prokMSA_id:013061 X52934 Mycobacterium avium subsp. paratuberculosis ATCC 19698 . prokMSA_id:013067 X53999 Mycobacterium leprae. prokMSA_id:013163 X55022 Mycobacterium leprae. prokMSA_id:013173 X55588 Mycobacterium tuberculosis str. H37/Rv. prokMSA_id:013077 X55589 Mycobacterium bovis str. vallee. prokMSA_id:013142 X55591 Mycobacterium komossense str. Ko2 ATCC 33013 . prokMSA_id:013035 X55593 Mycobacterium diernhoferi str. SN 1418 ATCC 19340 . prokMSA_id:013172 X55594 Mycobacterium gadium ATCC 27726 . prokMSA_id:013105 X55595 Mycobacterium aurum ATCC 23366 . prokMSA_id:013164 X55596 Mycobacterium chubuense ATCC 27278 . prokMSA_id:013056 X55597 Mycobacterium obuense ATCC 27023 . prokMSA_id:013174 X55598 Mycobacterium aichiense ATCC 27280 . prokMSA_id:013141 X55599 Mycobacterium gilvum ATCC 43909 . prokMSA_id:013048 X55600 Mycobacterium madagascariense ATCC 49865 . prokMSA_id:013179 X55601 Mycobacterium vaccae ATCC 15483 . prokMSA_id:013120 X55603 Mycobacterium chitae ATCC 19627 . prokMSA_id:013129 X55604 Mycobacterium asiaticum str. N6IH ATCC 25276 . prokMSA_id:013144 X58888 Mycobacterium leprae str. armadillo grown. prokMSA_id:013177 X58890 Mycobacterium tuberculosis. prokMSA_id:013058 X58954 Mycobacterium ulcerans. prokMSA_id:013200 X60070 Mycobacterium genavense str. 2289 ATCC 51233 . prokMSA_id:013261 X63608 Mycobacterium confluentis. prokMSA_id:013047 X67096 Mycobacterium hiberniae str. Hi 11 ATCC 49874 . prokMSA_id:013262 X67847 Mycobacterium intermedium. prokMSA_id:013041 X70960 Mycobacterium heidelbergense. prokMSA_id:013204 X70961 Mycobacterium interjectum str. 4185/92 DSM 44064 . prokMSA_id:013264 X73630 Mycobacterium sp. str. 94-92. prokMSA_id:013188 X79094 Mycobacterium chlorophenolicum str. PCP-I DSM 43826 . prokMSA_id:013032 X79292 Mycobacterium chlorophenolicum str. PCP-I DSM 43826 . prokMSA_id:013138 X80768 Mycobacterium isoniacini str. INA-I. prokMSA_id:013068 X80769 Mycobacterium lentiflavum str. 2186/92 ATCC 51985 . prokMSA_id:013134 X80770 Mycobacterium lentiflavum str. 439/93 ATCC 51986. prokMSA_id:013159 X81891 Mycobacterium sp. str. BB1. prokMSA_id:013126 X81926 Mycobacterium chlorophenolicum str. PCP-I NCIMB 12325 . prokMSA_id:013157 X81996 Mycobacterium gilvum ATCC 43909 . prokMSA_id:013054 X82459 Mycobacterium shimoidei ATCC 27962 . prokMSA_id:013057 X84977 Mycobacterium sp. str. PYR-1. prokMSA_id:013053 X84978 Mycobacterium sp. str. PAH135. prokMSA_id:013091 X88906 Mycobacterium sp. str. IWGMT 90143. prokMSA_id:013131 X88907 Mycobacterium sp. str. IWGMT 90018. prokMSA_id:013043 X88908 Mycobacterium sp. str. IWGMT 90174. prokMSA_id:013210 X88909 Mycobacterium sp. str. IWGMT 90203. prokMSA_id:013211 X88910 Mycobacterium sp. str. IWGMT 90093. prokMSA_id:013123 X88911 Mycobacterium sp. str. IWGMT 90160. prokMSA_id:013124 X88912 Mycobacterium sp. str. IWGMT 90236. prokMSA_id:013111 X88913 Mycobacterium sp. str. IWGMT 90210. prokMSA_id:013263 X88914 Mycobacterium sp. str. IWGMT 90161. prokMSA_id:013209 X88915 Mycobacterium sp. str. IWGMT 90100. prokMSA_id:013181 X88922 Mycobacterium conspicuum str. 3895/92. prokMSA_id:013168 X88923 Mycobacterium haemophilum. prokMSA_id:013122 X88925 Mycobacterium paraffinicum ATCC 12670. prokMSA_id:013059 X88926 Mycobacterium ulcerans str. Borstel 10564/70. prokMSA_id:013148 X93026 Mycobacterium sp. str. MCRO 10. prokMSA_id:026897 X93027 Mycobacterium sp. strain MCRO 16 prokMSA_id:013110 X93029 Mycobacterium sp. str. MCRO 18. prokMSA_id:037418 X93030 Mycobacterium sp. strain MCRO 19 prokMSA_id:049725 X93031 Mycobacterium sp. strain MCRO 24 prokMSA_id:013198 X93032 Mycobacterium sp. str. MCRO 6. prokMSA_id:013147 X93033 Mycobacterium sp. str. MCRO 7. prokMSA_id:013208 X93034 Mycobacterium sp. str. MCRO 8. prokMSA_id:013095 X93182 Mycobacterium austroafricanum str. E9789-SA124 ATCC 33464 . prokMSA_id:013066 X93183 Mycobacterium parafortuitum str. 311 DSM 43528 . prokMSA_id:013137 X93184 Mycobacterium hodleri str. EMI2 DSM 44183 . prokMSA_id:013108 X93995 Mycobacterium lentiflavum str. 89-446 ATCC 51988. prokMSA_id:036522 X99838 M.mageritense prokMSA_id:013250 Y08453 Mycobacterium smegmatis str. mc2 155. prokMSA_id:013253 Y08857 Mycobacterium sp. str. MA-112/96. prokMSA_id:013255 Y12871 Mycobacterium wolinsky ATCC 700009. prokMSA_id:013249 Y12872 Mycobacterium smegmatis str. M069. prokMSA_id:013252 Y12873 Mycobacterium wolinsky str. 700010. prokMSA_id:013191 Y15709 Mycobacterium anthracenicum. prokMSA_id:013102 Z13990 Mycobacterium ulcerans. prokMSA_id:072241 Z50172 M.tilburgii prokMSA_id:013225 Z73377 clone Ep_T1.27. prokMSA_id:013229 Z73378 clone Ep_T1.178. prokMSA_id:013109 Z73379 clone Ep_T1.194. prokMSA_id:049893 Z83862 Mycobacterium tuberculosis H37Rv complete genome; segment 58/162 2.30.1.13.1.1.095 OTU 1 seq prokMSA_id:042979 X85244 Gordonia-like sp. strain J81 2.30.1.13.1.1.096 OTU 1 seq prokMSA_id:046792 AJ277838 ARFS-14 2.30.1.13.1.1.097 OTU 1 seq prokMSA_id:074421 AF220427 Mycobacterium sp. AT-3 2.30.1.13.1.1.098 OTU 1 seq prokMSA_id:075008 AY154484 earthworm intestine clone wi18 2.30.1.13.1.1.099 OTU 1 seq prokMSA_id:075178 AY159150 MF_clone_143 2.30.1.13.1.1.100 OTU 2 seqs prokMSA_id:086670 AY227355 Mycobacterium sp. 1BCD clone 1 prokMSA_id:084725 AY227356 Mycobacterium sp. 1BCD clone 2 2.30.1.13.1.1.101 OTU 1 seq prokMSA_id:087618 AY268332 clone D6 small subunit 2.30.1.13.1.1.102 OTU 1 seq prokMSA_id:092235 AJ580380 Mycobacterium sp. 'Bavariae' 2.30.1.13.1.1.999 poor quality 614 seqs prokMSA_id:051389 AB010622 firmicute clone ASB024 prokMSA_id:013034 AB023373 Mycobacterium IFO16252 IFO 16252. prokMSA_id:064238 AB049920 sludge v9-1 prokMSA_id:073518 AB054917 Mycobacterium sp. 1032b prokMSA_id:085739 AB098004 Actinobacterium ANRB21-5 prokMSA_id:084630 AB098005 Actinobacterium ANRB21-6 prokMSA_id:083669 AB106917 Gram-positive 1-3 prokMSA_id:084189 AB106918 Gram-positive 1-6 prokMSA_id:083817 AB106919 Gram-positive 2-1 prokMSA_id:097641 AB122961 Mycobacterium sp. 410E12 prokMSA_id:098525 AB123400 Mycobacterium sp. 428D11 prokMSA_id:097309 AB123459 Mycobacterium sp. 431D01 prokMSA_id:096712 AB123465 Mycobacterium sp. 431D07 prokMSA_id:016898 AF078445 Grassland soil clone sl3_815 prokMSA_id:040109 AF144747 Mycobacterium sp. Murphy prokMSA_id:034149 AF217193 Mycobacterium sp. 'Sydney 1558' prokMSA_id:047129 AF220428 Mycobacterium sp. CT-11 prokMSA_id:074016 AF220429 Mycobacterium sp. CT-12 prokMSA_id:028510 AF220430 Mycobacterium sp. JT-15 prokMSA_id:047777 AF220431 Mycobacterium sp. KT-19 prokMSA_id:071915 AF220432 Mycobacterium sp. KT-22 prokMSA_id:073891 AF220433 Mycobacterium sp. KT-23 prokMSA_id:046549 AF240131 Grassland soil TSA-3 prokMSA_id:018870 AF257216 Mycobacterium chesapeaki prokMSA_id:054483 AF271347 Mycobacterium marinum prokMSA_id:045115 AF273022 Mycobacterium ulcerans prokMSA_id:047856 AF277795 Mycobacterium sp. 1B prokMSA_id:051669 AF277796 Mycobacterium sp. 2B prokMSA_id:040769 AF277797 Mycobacterium sp. 3B prokMSA_id:036718 AF277798 Mycobacterium sp. 4B prokMSA_id:051654 AF277799 Mycobacterium sp. 5B prokMSA_id:037789 AF277800 Mycobacterium sp. 6B prokMSA_id:021681 AF294742 Mycobacterium sp. AC-1 prokMSA_id:019266 AF294743 Mycobacterium sp. CT-9 prokMSA_id:044691 AF294744 Mycobacterium sp. CT-10 prokMSA_id:025299 AF294745 Mycobacterium sp. CT-24 prokMSA_id:041565 AF294746 Mycobacterium sp. CT-25 prokMSA_id:024559 AF294747 Mycobacterium sp. JC-13 prokMSA_id:023727 AF294748 Mycobacterium sp. JC-14 prokMSA_id:069887 AF294749 Mycobacterium sp. KT-26 prokMSA_id:074368 AF294750 Mycobacterium sp. KT-27 prokMSA_id:021861 AF325531 Mycobacterium sp. prokMSA_id:018010 AF330695 Mycobacterium sp. CC-4 prokMSA_id:073165 AF349966 Mycobacterium sp. CT-26 prokMSA_id:071595 AF349967 Mycobacterium sp. CT-27 prokMSA_id:069968 AF349968 Mycobacterium sp. CT-28 prokMSA_id:032959 AF349969 Mycobacterium sp. CT-29 prokMSA_id:026786 AF349970 Mycobacterium sp. CT-30 prokMSA_id:027750 AF349971 Mycobacterium sp. CT-31 prokMSA_id:072886 AF349972 Mycobacterium sp. CT-32 prokMSA_id:038688 AF349973 Mycobacterium sp. CT-33 prokMSA_id:068063 AF365683 clone BT60DS1BA7 prokMSA_id:051372 AF379019 clone EV4 prokMSA_id:027114 AF379033 clone EV19 prokMSA_id:024585 AF379035 clone EV21 prokMSA_id:051271 AF379696 clone SL25 prokMSA_id:041382 AF433134 Mycobacterium xenopi strain GUMRVH prokMSA_id:019868 AF433135 Mycobacterium celatum strain L8BCH prokMSA_id:064622 AF467340 Gordonia sp. clone 1588 prokMSA_id:055522 AF498651 Mycobacterium aichiense strain JS61 prokMSA_id:060762 AF498653 Mycobacterium rhodesiae strain JS615 prokMSA_id:060761 AF498654 Mycobacterium gadium strain JS616 prokMSA_id:060756 AF498655 Mycobacterium tusciae strain JS617 prokMSA_id:060754 AF498657 Mycobacterium moriokaense strain JS619 prokMSA_id:060753 AF498658 Mycobacterium rhodesiae strain JS620 prokMSA_id:060752 AF498660 Mycobacterium rhodesiae strain K1 prokMSA_id:060751 AF498661 Mycobacterium rhodesiae strain TM1 prokMSA_id:067016 AF504926 Mycobacterium celatum strain SS/AIIMS/HIV9 prokMSA_id:057982 AF544262 actinobacterium isolate T29 prokMSA_id:057961 AF544289 actinobacterium isolate T17 prokMSA_id:056598 AF544302 actinobacterium isolate T48 prokMSA_id:057924 AF544337 actinobacterium isolate M38 prokMSA_id:057922 AF544340 actinobacterium isolate M46 prokMSA_id:057918 AF544342 actinobacterium isolate D05 prokMSA_id:057911 AF544351 actinobacterium isolate D27 prokMSA_id:057908 AF544356 actinobacterium isolate D42 prokMSA_id:057899 AF544367 actinobacterium isolate D58 prokMSA_id:071982 AF544629 Mycobacterium frederiksbergense isolate VM0531 complete prokMSA_id:073982 AF544630 Mycobacterium frederiksbergense isolate VM0458 complete prokMSA_id:070944 AF544631 Mycobacterium frederiksbergense isolate VM0579 complete prokMSA_id:071162 AF544632 Mycobacterium frederiksbergense isolate VM0585 complete prokMSA_id:078907 AF547892 Mycobacterium abscessus strain CIP 104536 prokMSA_id:078434 AF547893 Mycobacterium africanum strain CIP 105147 prokMSA_id:078917 AF547894 Mycobacterium aichiense strain DSM 44147 prokMSA_id:078730 AF547895 Mycobacterium alvei strain CIP 103464 prokMSA_id:078454 AF547896 Mycobacterium asiaticum strain DSM 44297 prokMSA_id:078762 AF547897 Mycobacterium austroafricanum strain CIP 105395 prokMSA_id:078703 AF547898 Mycobacterium avium subsp. avium strain CIP 104244 prokMSA_id:079059 AF547899 Mycobacterium avium subsp. paratuberculosis strain CIP 103963 prokMSA_id:078711 AF547900 Mycobacterium avium subsp. silvaticum strain CIP 103317 prokMSA_id:078997 AF547901 Mycobacterium bohemicum strain CIP 105811 prokMSA_id:078937 AF547902 Mycobacterium botniense strain DSM 44537 prokMSA_id:078501 AF547903 Mycobacterium bovis strain CIP 105234 prokMSA_id:078542 AF547904 Mycobacterium bovis strain CIP 105050 prokMSA_id:078873 AF547905 Mycobacterium bovis strain BCG prokMSA_id:078560 AF547906 Mycobacterium branderi strain CIP 104592 prokMSA_id:078795 AF547907 Mycobacterium brumae strain CIP 103465 prokMSA_id:078425 AF547908 Mycobacterium celatum strain CIP 106109 prokMSA_id:078672 AF547909 Mycobacterium chelonae strain CIP 104535 prokMSA_id:078645 AF547910 Mycobacterium chitae strain CIP 105383 prokMSA_id:078488 AF547911 Mycobacterium chlorophenolicum strain CIP 104189 prokMSA_id:078437 AF547912 Mycobacterium chubuense strain CIP 106810 prokMSA_id:079022 AF547913 Mycobacterium confluentis strain CIP 105510 prokMSA_id:079039 AF547914 Mycobacterium conspicuum strain CIP 105165 prokMSA_id:078847 AF547915 Mycobacterium cookii strain CIP 105396 prokMSA_id:078439 AF547916 Mycobacterium diernhoferi strain CIP 105384 prokMSA_id:078922 AF547917 Mycobacterium doricum strain DSM 44339 prokMSA_id:078704 AF547918 Mycobacterium duvalii strain CIP 104539 prokMSA_id:078472 AF547919 Mycobacterium elephantis strain CIP 106831 prokMSA_id:079032 AF547920 Mycobacterium fallax strain CIP 81.39 prokMSA_id:078469 AF547921 Mycobacterium farcinogenes strain DSM 43637 prokMSA_id:078854 AF547922 Mycobacterium flavescens strain CIP 104533 prokMSA_id:079051 AF547923 Mycobacterium fortuitum subsp. acetamidolyticum strain CIP 105423 prokMSA_id:078665 AF547924 Mycobacterium fortuitum subsp. fortuitum strain CIP 104534 prokMSA_id:078427 AF547925 Mycobacterium frederiksbergense strain DSM 44346 prokMSA_id:078903 AF547926 Mycobacterium gadium strain CIP 105388 prokMSA_id:078693 AF547927 Mycobacterium gastri strain CIP 104530 prokMSA_id:078553 AF547928 Mycobacterium genavense strain DSM 44424 prokMSA_id:078719 AF547929 Mycobacterium gilvum strain DSM 44503 prokMSA_id:078742 AF547930 Mycobacterium goodii strain CIP 106439 prokMSA_id:078498 AF547931 Mycobacterium gordonae strain CIP 104529 prokMSA_id:078458 AF547932 Mycobacterium haemophilum strain CIP 105049 prokMSA_id:078965 AF547933 Mycobacterium hassiacum strain CIP 105218 prokMSA_id:078661 AF547934 Mycobacterium heckeshornense strain DSM 44428 prokMSA_id:079027 AF547935 Mycobacterium heidelbergense strain CIP 105424 prokMSA_id:078450 AF547936 Mycobacterium hodleri strain CIP 104909 prokMSA_id:078753 AF547937 Mycobacterium interjectum strain DSM 44064 prokMSA_id:078745 AF547938 Mycobacterium intermedium strain CIP 104542 prokMSA_id:078660 AF547939 Mycobacterium intracellulare strain CIP 104243 prokMSA_id:078714 AF547940 Mycobacterium kansasii strain CIP 104589 prokMSA_id:078967 AF547941 Mycobacterium kubicae strain CIP 106428 prokMSA_id:078859 AF547942 Mycobacterium lentiflavum strain CIP 105465 prokMSA_id:078659 AF547943 Mycobacterium madagascariense strain CIP 104538 prokMSA_id:078666 AF547944 Mycobacterium mageritense strain CIP 104973 prokMSA_id:078888 AF547945 Mycobacterium malmoense strain CIP 105775 prokMSA_id:078999 AF547946 Mycobacterium marinum strain CIP 104528 prokMSA_id:078494 AF547947 Mycobacterium microti strain CIP 104256 prokMSA_id:078725 AF547948 Mycobacterium moriokaense strain CIP 105393 prokMSA_id:078949 AF547949 Mycobacterium mucogenicum strain CIP 105223 prokMSA_id:078789 AF547950 Mycobacterium murale strain CIP 105980 prokMSA_id:078874 AF547951 Mycobacterium neoaurum strain CIP 105387 prokMSA_id:078834 AF547952 Mycobacterium nonchromogenicum strain DSM 44164 prokMSA_id:078441 AF547953 Mycobacterium novocastrense strain CIP 105546 prokMSA_id:078868 AF547954 Mycobacterium obuense strain CIP 106803 prokMSA_id:078895 AF547955 Mycobacterium parafortuitum strain CIP 106802 prokMSA_id:078476 AF547956 Mycobacterium peregrinum strain CIP 105382 prokMSA_id:078461 AF547957 Mycobacterium phlei strain CIP 105389 prokMSA_id:078932 AF547958 Mycobacterium porcinum strain DSM 44242 prokMSA_id:078502 AF547959 Mycobacterium poriferae strain CIP 105394 prokMSA_id:078751 AF547960 Mycobacterium pulveris strain CIP 106804 prokMSA_id:078819 AF547961 Mycobacterium rhodesiae strain CIP 106806 prokMSA_id:078792 AF547962 Mycobacterium scrofulaceum strain CIP 105416 prokMSA_id:078637 AF547963 Mycobacterium senegalense strain CIP 104941 prokMSA_id:078618 AF547964 Mycobacterium septicum strain CIP 106642 prokMSA_id:078567 AF547965 Mycobacterium shimoidei strain DSM 44152 prokMSA_id:079037 AF547966 Mycobacterium simiae strain CIP 104531 prokMSA_id:078470 AF547967 Mycobacterium smegmatis strain CIP 104444 prokMSA_id:078869 AF547968 Mycobacterium sphagni strain DSM 44076 prokMSA_id:078507 AF547969 Mycobacterium szulgai strain CIP 104532 prokMSA_id:078431 AF547970 Mycobacterium terrae strain CIP 104321 prokMSA_id:078845 AF547971 Mycobacterium thermoresistibile strain CIP 105390 prokMSA_id:078761 AF547972 Mycobacterium tokaiense strain CIP 106807 prokMSA_id:078779 AF547973 Mycobacterium triplex strain CIP 106108 prokMSA_id:078747 AF547974 Mycobacterium triviale strain DSM 44153 prokMSA_id:078673 AF547975 Mycobacterium bovis subsp. caprae strain CIP 105776 prokMSA_id:078436 AF547976 Mycobacterium tuberculosis subsp. tuberculosis strain CIP 105795 prokMSA_id:078669 AF547977 Mycobacterium tuberculosis subsp. tuberculosis strain CIP 64.31 prokMSA_id:078479 AF547978 Mycobacterium tusciae strain CIP 106367 prokMSA_id:079087 AF547979 Mycobacterium ulcerans strain CIP 105425 prokMSA_id:078471 AF547980 Mycobacterium vaccae strain CIP 105934 prokMSA_id:078694 AF547981 Mycobacterium wolinskyi strain CIP 106348 prokMSA_id:078417 AF547982 Mycobacterium xenopi strain CIP 104035 prokMSA_id:026556 AJ007315 Mycobacterium canettii variant A prokMSA_id:013117 AJ011511 Mycobacterium sp. str. IpA-13. prokMSA_id:070382 AJ269557 Mycobacterium sp. clone myco1 prokMSA_id:046030 AJ269558 Mycobacterium sp. clone myco2 prokMSA_id:073698 AJ269559 Mycobacterium sp. clone myco3 prokMSA_id:023296 AJ269560 Mycobacterium sp. clone myco4 prokMSA_id:031699 AJ269561 Mycobacterium sp. clone myco5 prokMSA_id:052151 AJ269562 Mycobacterium sp. clone myco6 prokMSA_id:030195 AJ269564 Mycobacterium sp. clone myco8 prokMSA_id:042843 AJ269565 Mycobacterium sp. clone myco9 prokMSA_id:051032 AJ269566 Mycobacterium sp. clone myco10 prokMSA_id:038353 AJ279017 Mycobacterium lepraemurium prokMSA_id:020766 AJ294740 Mycobacterium sp. 'cat' isolate Gus prokMSA_id:023312 AJ294741 Mycobacterium sp. 'cat' isolate Martin prokMSA_id:043570 AJ294742 Mycobacterium sp. 'cat' isolate Blackie prokMSA_id:036044 AJ294743 Mycobacterium sp. 'cat' Caramenica prokMSA_id:051085 AJ294744 Mycobacterium sp. 'cat' isolate Early prokMSA_id:045526 AJ294745 Mycobacterium sp. 'cat' isolate NZ1 prokMSA_id:047253 AJ294746 Mycobacterium sp. 'cat' isolate NZ2 prokMSA_id:042425 AJ318762 soil clone FHM2110 prokMSA_id:016844 AJ318769 soil clone FHM146 prokMSA_id:036009 AJ318776 soil clone FHM730 prokMSA_id:031387 AJ413603 Mycobacterium sp. dtb94 strain dtb94 prokMSA_id:026432 AJ416908 Mycobacterium fortuitum strain MB18 prokMSA_id:034778 AJ416912 Mycobacterium terrae strain MB66 prokMSA_id:030543 AJ420143 Mycobacterium sp. clone soil132a prokMSA_id:049938 AJ420144 Mycobacterium sp. clone soil132c prokMSA_id:046513 AJ420145 Mycobacterium sp. clone soil164 prokMSA_id:038015 AJ420146 Mycobacterium sp. clone soilcKPSa prokMSA_id:031982 AJ420147 Mycobacterium sp. clone soil133 prokMSA_id:043188 AJ420148 Mycobacterium sp. clone soil134a prokMSA_id:045668 AJ420149 Mycobacterium sp. clone soil8mjd prokMSA_id:032554 AJ420150 Mycobacterium sp. clone soil126 prokMSA_id:044879 AJ420151 Mycobacterium sp. clone soil8MJa prokMSA_id:046653 AJ420152 Mycobacterium sp. clone soil128c prokMSA_id:022344 AJ420153 Mycobacterium sp. clone soilcKPSb prokMSA_id:049526 AJ420154 Mycobacterium sp. clone soil93 prokMSA_id:019617 AJ420155 Mycobacterium sp. clone soil115 prokMSA_id:032904 AJ420156 Mycobacterium sp. clone soil58 prokMSA_id:028266 AJ420157 Mycobacterium sp. clone soil66 prokMSA_id:023136 AJ420158 Mycobacterium sp. clone soil2525c prokMSA_id:041759 AJ420159 Mycobacterium sp. clone soil160 prokMSA_id:047798 AJ420160 Mycobacterium sp. clone soil2525b prokMSA_id:019012 AJ420161 Mycobacterium sp. clone soil128a prokMSA_id:047753 AJ420162 Mycobacterium sp. clone soil133a prokMSA_id:050943 AJ420163 Mycobacterium sp. clone soil68 prokMSA_id:022826 AJ420164 Mycobacterium sp. clone soil134b prokMSA_id:060122 AJ427640 actinomycete clone ACT-A6 prokMSA_id:060114 AJ427651 actinomycete clone ACT-C1 prokMSA_id:060107 AJ427660 actinomycete clone ACT-C10 prokMSA_id:056643 AJ458948 Mycobacterium sp. LIV-1836 prokMSA_id:073818 AJ458949 Mycobacterium sp. LIV-2052 prokMSA_id:073298 AJ458950 Mycobacterium sp. LIV-2123 prokMSA_id:066995 AJ458951 Mycobacterium sp. LIV-2129 prokMSA_id:066993 AJ458952 Mycobacterium sp. LIV-2255 prokMSA_id:055713 AJ458953 Mycobacterium sp. LIV-2304 prokMSA_id:066991 AJ458954 Mycobacterium sp. LIV-2071 prokMSA_id:066990 AJ458955 Mycobacterium sp. LIV-2318 prokMSA_id:066986 AJ458956 Mycobacterium sp. LIV-1499 prokMSA_id:066987 AJ458957 Mycobacterium sp. LIV-389 prokMSA_id:072006 AJ488914 Mycobacterium sp. clone M1 prokMSA_id:064193 AJ488915 Mycobacterium sp. clone M2 prokMSA_id:055722 AJ488916 Mycobacterium sp. clone M3 prokMSA_id:064191 AJ488917 Mycobacterium sp. clone M4 prokMSA_id:064188 AJ488918 Mycobacterium sp. clone M5 prokMSA_id:064185 AJ488919 Mycobacterium sp. clone M6 prokMSA_id:064186 AJ488920 Mycobacterium sp. clone A1 prokMSA_id:064183 AJ488921 Mycobacterium sp. clone A2 prokMSA_id:073845 AJ488922 Mycobacterium sp. clone A4 prokMSA_id:064181 AJ488923 Mycobacterium sp. clone A6 prokMSA_id:055674 AJ488924 Mycobacterium sp. clone A7 prokMSA_id:074913 AJ535505 Mycobacterium cf. triplex isolate ANT prokMSA_id:093063 AJ581473 Mycobacterium lentiflavum strain agha13 prokMSA_id:092264 AJ581474 Mycobacterium lentiflavum strain M2 prokMSA_id:092756 AJ581475 Mycobacterium lentiflavum strain M3 prokMSA_id:092599 AJ581476 Mycobacterium lentiflavum strain M4 prokMSA_id:092735 AJ581477 Mycobacterium lentiflavum strain M6 prokMSA_id:092788 AJ581478 Mycobacterium lentiflavum strain M7 prokMSA_id:092689 AJ581479 Mycobacterium sp. MH1 strain MH1 prokMSA_id:035853 AY037720 earthworm cast clone C071 prokMSA_id:047970 AY039462 Earthworm cast C20M2 prokMSA_id:045558 AY039467 Earthworm cast NC4 prokMSA_id:041600 AY039481 Soil S103M1 prokMSA_id:028235 AY039507 Soil S90D1 prokMSA_id:061501 AY043719 actinobacterium clone NOW2.35WL prokMSA_id:061388 AY043853 actinobacterium clone NMW3.100WL prokMSA_id:061385 AY043857 actinobacterium clone NMW3.138WL prokMSA_id:061372 AY043871 actinobacterium clone SMW4.125WL prokMSA_id:061346 AY043900 actinobacterium clone SMS9.37WL prokMSA_id:061345 AY043901 actinobacterium clone SMS9.49WL prokMSA_id:044744 AY055074 clone S33 prokMSA_id:025378 AY055077 clone S42 prokMSA_id:030886 AY055087 clone B30 prokMSA_id:070802 AY056467 Mycobacterium phlei prokMSA_id:072413 AY057889 Mycobacterium sp. PCO1 prokMSA_id:017687 AY061984 Mycobacterium visibilis strain Saskatchewan prokMSA_id:016655 AY061985 Mycobacterium visibilis strain Oregon prokMSA_id:071928 AY061986 Mycobacterium visibilis strain Idaho prokMSA_id:068385 AY082372 Mycobacterium hiberniae prokMSA_id:064340 AY112744 Mycobacterium tusciae prokMSA_id:062307 AY124407 actinobacterium clone CSc03 prokMSA_id:062305 AY124409 actinobacterium clone CSc07 prokMSA_id:062297 AY124418 actinobacterium clone SAa11 prokMSA_id:062276 AY124442 actinobacterium clone SDc03 prokMSA_id:055291 AY143729 Mycobacterium sp. clone P80 prokMSA_id:069215 AY143742 Mycobacterium sp. clone V81 prokMSA_id:073822 AY143753 Mycobacterium sp. clone Lur6 prokMSA_id:069056 AY143761 Mycobacterium sp. clone Lur21 prokMSA_id:069924 AY144121 Mycobacterium sp. clone P36 prokMSA_id:074388 AY148196 Mycobacterium moriokaense clone TM/6 prokMSA_id:057514 AY148197 Mycobacterium gadium clone K3840/7 prokMSA_id:057515 AY148198 Mycobacterium holsaticum clone B101/3 prokMSA_id:070961 AY148199 Mycobacterium isoniacini clone B101/2 prokMSA_id:057512 AY148200 Mycobacterium frederiksbergense clone K3840/2 prokMSA_id:057510 AY148201 Mycobacterium frederiksbergense clone K3840/4 prokMSA_id:072173 AY148202 Mycobacterium sp. clone B101/1 prokMSA_id:057504 AY148203 Mycobacterium tusciae clone TM/3 prokMSA_id:072533 AY148204 Mycobacterium tusciae clone B101/4 prokMSA_id:074067 AY148205 Mycobacterium tusciae clone TM/4 prokMSA_id:070570 AY148206 Mycobacterium tusciae clone TM/5 prokMSA_id:057506 AY148207 Mycobacterium tusciae clone K3840/3 prokMSA_id:057502 AY148208 Mycobacterium tusciae clone TM/8 prokMSA_id:070741 AY148209 Mycobacterium tusciae clone TM/2 prokMSA_id:057501 AY148210 Mycobacterium tusciae clone K3480/8 prokMSA_id:057498 AY148211 Mycobacterium tusciae clone TM/1 prokMSA_id:073103 AY148212 Mycobacterium septicum clone B101/5 prokMSA_id:070356 AY148213 Mycobacterium septicum clone TM/7 prokMSA_id:057496 AY148214 Mycobacterium austroafricanum clone K3840/6 prokMSA_id:074343 AY148215 Mycobacterium sp. clone B101/7 prokMSA_id:056080 AY148216 Mycobacterium sp. clone K3840/1 prokMSA_id:072306 AY148217 Mycobacterium petroleophilum clone B101/6 prokMSA_id:069409 AY149471 Mycobacterium sp. clone LTUGr07856 prokMSA_id:076065 AY150970 actinobacterium clone uvi39 prokMSA_id:076720 AY157071 Gram-positive isolate WC-21 prokMSA_id:075626 AY157100 Gram-positive isolate WB-23 prokMSA_id:076143 AY159803 Mycobacterium neoaurum strain M97 prokMSA_id:069613 AY162027 Mycobacterium rhodesiae prokMSA_id:069525 AY162030 Mycobacterium mageritense prokMSA_id:079415 AY184226 Mycobacterium sp. HSC 1658 prokMSA_id:079532 AY185814 Mycobacterium sp. UC3 prokMSA_id:079214 AY186860 actinobacterium clone uvi39 prokMSA_id:079480 AY186878 clone uvel36 prokMSA_id:080441 AY215201 Mycobacterium sp. N233 prokMSA_id:080271 AY215202 Mycobacterium sp. N523 prokMSA_id:080430 AY215203 Mycobacterium sp. N105 prokMSA_id:079714 AY215204 Mycobacterium sp. N1728C prokMSA_id:080597 AY215205 Mycobacterium sp. N1873C prokMSA_id:080631 AY215206 Mycobacterium sp. N094 prokMSA_id:080796 AY215207 Mycobacterium sp. N083 prokMSA_id:079718 AY215208 Mycobacterium sp. N109C prokMSA_id:080140 AY215209 Mycobacterium sp. N115 prokMSA_id:080836 AY215210 Mycobacterium sp. N1725C prokMSA_id:080599 AY215211 Mycobacterium sp. N179 prokMSA_id:080865 AY215212 Mycobacterium sp. N183 prokMSA_id:080771 AY215213 Mycobacterium sp. N198 prokMSA_id:080412 AY215214 Mycobacterium sp. N199 prokMSA_id:079691 AY215215 Mycobacterium sp. N532C prokMSA_id:080917 AY215216 Mycobacterium sp. N548 prokMSA_id:080537 AY215217 Mycobacterium sp. N586 prokMSA_id:080456 AY215218 Mycobacterium sp. N661 prokMSA_id:079904 AY215219 Mycobacterium alvei prokMSA_id:080895 AY215220 Mycobacterium sp. N422 prokMSA_id:080991 AY215221 Mycobacterium asiaticum isolate N058 prokMSA_id:080769 AY215222 Mycobacterium asiaticum isolate N067 prokMSA_id:080464 AY215223 Mycobacterium asiaticum isolate N222 prokMSA_id:080409 AY215224 Mycobacterium asiaticum isolate N223 prokMSA_id:079607 AY215225 Mycobacterium asiaticum isolate N230 prokMSA_id:080840 AY215226 Mycobacterium sp. N061 prokMSA_id:080369 AY215227 Mycobacterium sp. N102 prokMSA_id:079918 AY215228 Mycobacterium sp. N110 prokMSA_id:080517 AY215229 Mycobacterium aurum isolate N1726C prokMSA_id:080478 AY215230 Mycobacterium aurum isolate N196 prokMSA_id:080905 AY215231 Mycobacterium aurum isolate N226 prokMSA_id:080928 AY215232 Mycobacterium celatum isolate N1798T prokMSA_id:080436 AY215233 Mycobacterium celatum isolate N224 prokMSA_id:079756 AY215234 Mycobacterium abscessus isolate N019 prokMSA_id:079975 AY215235 Mycobacterium abscessus isolate N416 prokMSA_id:080959 AY215236 Mycobacterium abscessus isolate N418 prokMSA_id:079831 AY215237 Mycobacterium sp. N570 prokMSA_id:080036 AY215238 Mycobacterium sp. N573 prokMSA_id:080392 AY215239 Mycobacterium sp. N608 prokMSA_id:080551 AY215240 Mycobacterium chubuense prokMSA_id:080580 AY215241 Mycobacterium sp. N485 prokMSA_id:080011 AY215242 Mycobacterium flavescens isolate N072P prokMSA_id:079905 AY215243 Mycobacterium flavescens isolate N090 prokMSA_id:080877 AY215244 Mycobacterium flavescens isolate N098 prokMSA_id:080255 AY215245 Mycobacterium fortuitum isolate 6841A prokMSA_id:080327 AY215246 Mycobacterium fortuitum isolate N313 prokMSA_id:080166 AY215247 Mycobacterium fortuitum isolate N419 prokMSA_id:080940 AY215248 Mycobacterium fortuitum isolate N625 prokMSA_id:080549 AY215249 Mycobacterium sp. N1734C prokMSA_id:079612 AY215250 Mycobacterium sp. N1874 prokMSA_id:080880 AY215251 Mycobacterium sp. N665 prokMSA_id:079781 AY215252 Mycobacterium sp. N667 prokMSA_id:080380 AY215253 Mycobacterium gallinarum prokMSA_id:079980 AY215254 Mycobacterium gordonae isolate N092 prokMSA_id:080136 AY215255 Mycobacterium gordonae isolate N1735C prokMSA_id:079766 AY215256 Mycobacterium gordonae isolate N306 prokMSA_id:079873 AY215257 Mycobacterium gordonae isolate N332 prokMSA_id:080335 AY215258 Mycobacterium gordonae isolate N391 prokMSA_id:079892 AY215259 Mycobacterium gordonae isolate N392 prokMSA_id:079800 AY215260 Mycobacterium gordonae isolate N393 prokMSA_id:080519 AY215261 Mycobacterium gordonae isolate N396 prokMSA_id:080780 AY215262 Mycobacterium haemophilum isolate N285 prokMSA_id:079859 AY215263 Mycobacterium haemophilum isolate N438 prokMSA_id:080079 AY215264 Mycobacterium haemophilum isolate N447 prokMSA_id:080860 AY215265 Mycobacterium haemophilum isolate N664 prokMSA_id:080744 AY215266 Mycobacterium immunogenum prokMSA_id:080659 AY215267 Mycobacterium sp. N499RC prokMSA_id:080001 AY215268 Mycobacterium sp. N516C prokMSA_id:080276 AY215269 Mycobacterium interjectum isolate N085C prokMSA_id:080941 AY215270 Mycobacterium interjectum isolate N364C prokMSA_id:080610 AY215271 Mycobacterium intermedium prokMSA_id:080736 AY215272 Mycobacterium kansasii isolate N350 prokMSA_id:079772 AY215273 Mycobacterium kansasii isolate N397 prokMSA_id:080632 AY215274 Mycobacterium kansasii isolate N398 prokMSA_id:080560 AY215275 Mycobacterium kansasii isolate N399 prokMSA_id:079971 AY215276 Mycobacterium kansasii isolate N400 prokMSA_id:081020 AY215277 Mycobacterium lentiflavum isolate N1770T prokMSA_id:080222 AY215278 Mycobacterium lentiflavum isolate N1781T prokMSA_id:080716 AY215279 Mycobacterium lentiflavum isolate N1783T prokMSA_id:080139 AY215280 Mycobacterium mageritense prokMSA_id:079656 AY215281 Mycobacterium malmoense isolate 29571A prokMSA_id:080408 AY215282 Mycobacterium malmoense isolate N207 prokMSA_id:079773 AY215283 Mycobacterium malmoense isolate N227 prokMSA_id:080793 AY215284 Mycobacterium malmoense isolate N475 prokMSA_id:080322 AY215285 Mycobacterium sp. N246 prokMSA_id:080264 AY215286 Mycobacterium sp. N633 prokMSA_id:080674 AY215287 Mycobacterium mucogenicum isolate N241 prokMSA_id:080568 AY215288 Mycobacterium mucogenicum isolate N242 prokMSA_id:080930 AY215289 Mycobacterium mucogenicum isolate N248 prokMSA_id:079771 AY215290 Mycobacterium mucogenicum isolate N249 prokMSA_id:079604 AY215291 Mycobacterium mucogenicum isolate N252 prokMSA_id:080274 AY215292 Mycobacterium mucogenicum isolate N281 prokMSA_id:080067 AY215293 Mycobacterium mucogenicum isolate N519C prokMSA_id:080839 AY215294 Mycobacterium sp. N343 prokMSA_id:080689 AY215295 Mycobacterium nonchromogenicum isolate N220 prokMSA_id:080502 AY215296 Mycobacterium nonchromogenicum isolate N239 prokMSA_id:080365 AY215297 Mycobacterium nonchromogenicum isolate N245 prokMSA_id:080545 AY215298 Mycobacterium nonchromogenicum isolate N250 prokMSA_id:080132 AY215299 Mycobacterium nonchromogenicum isolate N308 prokMSA_id:079837 AY215300 Mycobacterium nonchromogenicum isolate N554 prokMSA_id:079961 AY215301 Mycobacterium sp. N101 prokMSA_id:079721 AY215302 Mycobacterium sp. N135 prokMSA_id:079639 AY215303 Mycobacterium sp. N675 prokMSA_id:080194 AY215304 Mycobacterium rhodesiae prokMSA_id:080163 AY215305 Mycobacterium sp. N304 prokMSA_id:079748 AY215306 Mycobacterium sp. N431 prokMSA_id:080947 AY215307 Mycobacterium scrofulaceum isolate N134 prokMSA_id:080196 AY215308 Mycobacterium scrofulaceum isolate N269 prokMSA_id:081017 AY215309 Mycobacterium scrofulaceum isolate N270 prokMSA_id:080882 AY215310 Mycobacterium simiae isolate N106 prokMSA_id:079798 AY215311 Mycobacterium simiae isolate N478 prokMSA_id:080241 AY215312 Mycobacterium simiae isolate N497 prokMSA_id:080112 AY215313 Mycobacterium simiae isolate N501C prokMSA_id:079930 AY215314 Mycobacterium smegmatis isolate N126 prokMSA_id:079685 AY215315 Mycobacterium smegmatis isolate N144 prokMSA_id:080701 AY215316 Mycobacterium sp. N009T prokMSA_id:080838 AY215317 Mycobacterium sp. N056 prokMSA_id:080911 AY215318 Mycobacterium sp. N097 prokMSA_id:079642 AY215319 Mycobacterium sp. N103 prokMSA_id:080975 AY215320 Mycobacterium sp. N116N prokMSA_id:080329 AY215321 Mycobacterium sp. N119 prokMSA_id:080167 AY215322 Mycobacterium sp. N120 prokMSA_id:080211 AY215323 Mycobacterium sp. N123C prokMSA_id:080149 AY215324 Mycobacterium sp. N141 prokMSA_id:080805 AY215325 Mycobacterium sp. N160CC prokMSA_id:080427 AY215326 Mycobacterium sp. N161CC prokMSA_id:080902 AY215327 Mycobacterium sp. N165 prokMSA_id:079660 AY215328 Mycobacterium sp. N169 prokMSA_id:079818 AY215329 Mycobacterium sp. N1729C prokMSA_id:080109 AY215330 Mycobacterium sp. N173 prokMSA_id:080614 AY215331 Mycobacterium sp. N1730C prokMSA_id:080686 AY215332 Mycobacterium sp. N1764T prokMSA_id:079751 AY215333 Mycobacterium sp. N1766T prokMSA_id:080996 AY215334 Mycobacterium sp. N1767T prokMSA_id:080332 AY215335 Mycobacterium sp. N1768T prokMSA_id:080901 AY215336 Mycobacterium sp. N1772T prokMSA_id:080923 AY215337 Mycobacterium sp. N1773T prokMSA_id:080236 AY215338 Mycobacterium sp. N1774T prokMSA_id:079878 AY215339 Mycobacterium sp. N228 prokMSA_id:079973 AY215340 Mycobacterium sp. N271 prokMSA_id:081024 AY215341 Mycobacterium sp. N288 prokMSA_id:080081 AY215342 Mycobacterium sp. N346 prokMSA_id:079886 AY215343 Mycobacterium sp. N508 prokMSA_id:080543 AY215344 Mycobacterium sp. N530 prokMSA_id:079753 AY215345 Mycobacterium sp. N535C prokMSA_id:080756 AY215346 Mycobacterium sp. N582 prokMSA_id:080243 AY215347 Mycobacterium sp. N641C prokMSA_id:080246 AY215348 Mycobacterium sp. N845T prokMSA_id:080590 AY215349 Mycobacterium sp. N883T prokMSA_id:079641 AY215350 Mycobacterium sp. N526 prokMSA_id:080347 AY215351 Mycobacterium szulgai prokMSA_id:080407 AY215352 Mycobacterium sp. N256 prokMSA_id:080491 AY215353 Mycobacterium sp. N405 prokMSA_id:080074 AY215354 Mycobacterium sp. N406 prokMSA_id:079913 AY215355 Mycobacterium sp. N1739C prokMSA_id:080591 AY215356 Mycobacterium sp. N1740C prokMSA_id:080257 AY215357 Mycobacterium sp. N1742C prokMSA_id:079661 AY215358 Mycobacterium sp. N662 prokMSA_id:079875 AY215359 Mycobacterium terrae isolate N116 prokMSA_id:080663 AY215360 Mycobacterium terrae isolate N174 prokMSA_id:080806 AY215361 Mycobacterium terrae isolate N177 prokMSA_id:080301 AY215362 Mycobacterium terrae isolate N188 prokMSA_id:080532 AY215363 Mycobacterium terrae isolate N191 prokMSA_id:079745 AY215364 Mycobacterium terrae isolate N236 prokMSA_id:080529 AY215365 Mycobacterium terrae isolate N309 prokMSA_id:079625 AY215366 Mycobacterium sp. N146 prokMSA_id:080467 AY215367 Mycobacterium triplex isolate N1752T prokMSA_id:079939 AY215368 Mycobacterium triplex isolate N1765T prokMSA_id:080343 AY215369 Mycobacterium triviale prokMSA_id:080903 AY215370 Mycobacterium wolinskyi isolate N1756T prokMSA_id:079623 AY215371 Mycobacterium wolinskyi isolate N1776T prokMSA_id:080199 AY215372 Mycobacterium xenopi isolate 19250A prokMSA_id:080451 AY215373 Mycobacterium xenopi isolate MCRN086 prokMSA_id:080179 AY215374 Mycobacterium xenopi isolate N155 prokMSA_id:080295 AY215375 Mycobacterium xenopi isolate N434 prokMSA_id:079770 AY215376 Mycobacterium xenopi isolate N474 prokMSA_id:079931 AY215377 Mycobacterium xenopi isolate N524 prokMSA_id:080495 AY215378 Mycobacterium sp. N344 prokMSA_id:079825 AY215379 Mycobacterium sp. N1760T prokMSA_id:080414 AY215380 Mycobacterium celatum isolate N225C prokMSA_id:089208 AY306200 Mycobacterium sp. HSC970 prokMSA_id:088617 AY306201 Mycobacterium sp. 1351 prokMSA_id:088375 AY306202 Mycobacterium sp. HSC324 prokMSA_id:088343 AY306203 Mycobacterium sp. HSC468 prokMSA_id:089953 AY306205 Mycobacterium sp. HSC507 prokMSA_id:090494 AY306206 Mycobacterium sp. HSC514 prokMSA_id:088780 AY306207 Mycobacterium sp. HSC1158 prokMSA_id:089695 AY312270 Mycobacterium sp. 01-627 prokMSA_id:089420 AY312271 Mycobacterium sp. 01-628 prokMSA_id:088185 AY312272 Mycobacterium sp. 01-629 prokMSA_id:088812 AY312273 Mycobacterium sp. 01-632 prokMSA_id:088835 AY312274 Mycobacterium sp. 01-633 prokMSA_id:090241 AY312275 Mycobacterium sp. 01-636 prokMSA_id:090471 AY312276 Mycobacterium sp. 01-664 prokMSA_id:090143 AY312277 Mycobacterium sp. 01-665 prokMSA_id:093073 AY345102 Mycobacterium sp. clone TM/LB1 prokMSA_id:092747 AY345103 Mycobacterium sp. clone TM/LB2 prokMSA_id:093133 AY345104 Mycobacterium sp. clone TM/LB3 prokMSA_id:092787 AY345105 Mycobacterium sp. clone TM/LB4 prokMSA_id:092271 AY345106 Mycobacterium sp. clone TM/LB5 prokMSA_id:093065 AY345107 Mycobacterium sp. clone TM/LB6 prokMSA_id:092951 AY345108 Mycobacterium sp. clone TM/LB7 prokMSA_id:092780 AY345109 Mycobacterium sp. clone TM/LB8 prokMSA_id:092565 AY345110 Mycobacterium sp. clone TM/LB9 prokMSA_id:093179 AY364041 actinobacterium clone cRI18c prokMSA_id:093246 AY367018 Mycobacterium fortuitum prokMSA_id:093825 AY367019 Mycobacterium sp. Mc2 prokMSA_id:093645 AY367020 Mycobacterium sp. Mc3 prokMSA_id:093894 AY367021 Mycobacterium sp. Mc4 prokMSA_id:093752 AY367022 Mycobacterium sp. Mc5 prokMSA_id:093981 AY367023 Mycobacterium sp. Mc6 prokMSA_id:097501 AY394635 Mycobacterium sp. clone W1-11 prokMSA_id:096407 AY395148 actinobacterium clone D32ST prokMSA_id:098314 AY395149 actinobacterium clone D34ST prokMSA_id:097373 AY395154 actinobacterium clone E02ST prokMSA_id:095284 AY395175 clone G36K prokMSA_id:013100 M29554 Mycobacterium sp. str. chromogen. prokMSA_id:013049 M29555 Mycobacterium sp. str. 3937. prokMSA_id:013239 M29556 Mycobacterium asiaticum str. N6IH ATCC 25276 . prokMSA_id:013128 M29558 Mycobacterium aurum ATCC 23366 . prokMSA_id:013241 M29559 Mycobacterium abscessus str. L948 ATCC 19977 . prokMSA_id:013112 M29561 Mycobacterium flavescens ATCC 14474 . prokMSA_id:013093 M29562 Mycobacterium fallax ATCC 35219 . prokMSA_id:013103 M29563 Mycobacterium gordonae str. P-15 ATCC 14470 . prokMSA_id:013216 M29564 Mycobacterium neoaurum ATCC 25795 . prokMSA_id:013083 M29565 Mycobacterium nonchromogenicum ATCC 19530 . prokMSA_id:013212 M29566 Mycobacterium phlei ATCC 11758 . prokMSA_id:013081 M29567 Mycobacterium senegalense ATCC 35796 . prokMSA_id:013036 M29569 Mycobacterium avium subsp. paratuberculosis str. 18. prokMSA_id:013143 M29570 Mycobacterium thermoresistibile ATCC 19527 . prokMSA_id:013101 M29571 Mycobacterium triviale ATCC 23292 . prokMSA_id:013237 M29572 Mycobacterium avium str. serovar 4. prokMSA_id:013176 M29573 Mycobacterium avium str. serovar 1. prokMSA_id:013051 M29575 Mycobacterium kansasii str. G133 A. Pollak ATCC 12478 . prokMSA_id:013219 M58020 Mycobacterium leprae. prokMSA_id:013240 M61662 Mycobacterium chitae ATCC 19630. prokMSA_id:013080 M61663 Mycobacterium gadium ATCC 27726 . prokMSA_id:013092 M61665 Mycobacterium szulgai ATCC 35799 . prokMSA_id:013107 M61666 Mycobacterium malmoense str. Mo 816 ATCC 29571 . prokMSA_id:013045 M61667 Mycobacterium avium str. SJB#2. prokMSA_id:013132 M61668 Mycobacterium avium str. 9-60. prokMSA_id:013038 M61669 Mycobacterium avium str. IIIb TMC-1462. prokMSA_id:013201 M61670 Mycobacterium avium str. Hiberry 1244. prokMSA_id:013087 M61671 Mycobacterium avium str. Brennan#34. prokMSA_id:013106 M61672 Mycobacterium avium str. 8-2 Brennan#35. prokMSA_id:013060 M61673 Mycobacterium avium str. 11-11 Brennan#38. prokMSA_id:013243 M61674 Mycobacterium avium subsp. paratuberculosis str. peip. prokMSA_id:013084 M61675 Mycobacterium avium subsp. paratuberculosis. prokMSA_id:013231 M61676 Mycobacterium avium subsp. paratuberculosis str. Linda. prokMSA_id:013175 M61677 Mycobacterium avium subsp. paratuberculosis str. wein. prokMSA_id:013196 M61678 Mycobacterium avium subsp. paratuberculosis str. Dx8610316. prokMSA_id:013259 M61679 Mycobacterium avium subsp. paratuberculosis str. Dx8709991. prokMSA_id:013171 M61680 Mycobacterium avium subsp. paratuberculosis str. Y-37. prokMSA_id:013094 M61682 Mycobacterium intracellulare CDC 1214. prokMSA_id:013161 M61683 Mycobacterium intracellulare str. 1-18 Brennan#30. prokMSA_id:013125 M61684 Mycobacterium intracellulare str. 1-19 Brennan#31. prokMSA_id:013052 M61685 Mycobacterium intracellulare str. 1-13 Brennan#29. prokMSA_id:013247 M61686 Mycobacterium intracellulare str. 8-3 Brennan#36. prokMSA_id:013203 M95469 Mycobacterium kansasii. prokMSA_id:013195 NONE Mycobacterium intracellulare str. serovar 12 ATCC 35762. prokMSA_id:013242 NONE Mycobacterium intracellulare str. serovar 18 ATCC 35770. prokMSA_id:013220 NONE Mycobacterium intracellulare str. serovar 7 ATCC 35847. prokMSA_id:013245 S69216 Mycobacterium marinum. prokMSA_id:013265 U17276 Mycobacterium sp. str. 333. prokMSA_id:013156 U19365 Mycobacterium sp. str. 321. prokMSA_id:013088 U19366 Mycobacterium sp. str. 51. prokMSA_id:013189 X52923 Mycobacterium gordonae str. P-15 ATCC 14470 . prokMSA_id:013121 X52924 Mycobacterium scrofulaceum ATCC 19981 . prokMSA_id:013213 X52926 Mycobacterium szulgai ATCC 35799 . prokMSA_id:013090 X52931 Mycobacterium simiae ATCC 25275 . prokMSA_id:013180 X52932 Mycobacterium flavescens ATCC 14474 . prokMSA_id:013260 X53895 Mycobacterium xenopi ATCC 19250 . prokMSA_id:013046 X53896 Mycobacterium cookii str. NZ2 ATCC 49103 . prokMSA_id:013234 X55587 Mycobacterium leprae str. LTB. prokMSA_id:013214 X55590 Mycobacterium sphagni str. Sph29 ATCC 33026. prokMSA_id:013089 X55592 Mycobacterium farcinogenes DSM 43294. prokMSA_id:013258 X58889 Mycobacterium microti str. OV 254. prokMSA_id:013217 X67874 Mycobacterium chitae ATCC 19627 . prokMSA_id:013257 X78658 clone SMKN22. prokMSA_id:013170 X78659 clone SMKN23. prokMSA_id:013113 X78957 Mycobacterium sp. str. 8/18. prokMSA_id:013238 X80771 Mycobacterium mucogenicum ATCC 49650 . prokMSA_id:013169 X80772 Mycobacterium chelonae ATCC 49651. prokMSA_id:013215 X80773 Mycobacterium chelonae ATCC 49649. prokMSA_id:013136 X82235 Mycobacterium abscessus str. L948 ATCC 19977 . prokMSA_id:013135 X82236 Mycobacterium chelonae subsp. chelonae ATCC 35752 . prokMSA_id:013044 X88563 Mycobacterium conspicuum DSM 44146. prokMSA_id:013062 X88916 Mycobacterium sp. str. IWGMT 90147. prokMSA_id:013154 X88918 Mycobacterium sp. str. IWGMT 90233. prokMSA_id:013063 X88919 Mycobacterium sp. str. IWGMT 90242. prokMSA_id:013155 X88920 Mycobacterium sp. str. IWGMT 90237. prokMSA_id:013064 X88921 Mycobacterium sp. str. IWGMT 90238. prokMSA_id:013149 X93028 Mycobacterium sp. str. MCRO 17. prokMSA_id:074564 Y07954 Mycobacterium sp. prokMSA_id:051088 Y08205 Mycobacterium sp. isolate BN910 prokMSA_id:039408 Y08206 Mycobacterium sp. isolate BN1850 prokMSA_id:053787 Y09325 M.fortuitum prokMSA_id:021992 Y11581 Mycobacterium farcinogenes prokMSA_id:028792 Y11582 Mycobacterium senegalense prokMSA_id:013037 Z27069 Mycobacterium shimoidei. 2.30.1.13.1.2 TSU.PAUROMETABOLA_SUBGROUP 52 seqs 2.30.1.13.1.2.001 OTU 30 seqs prokMSA_id:013272 AF001011 Tsukamurella pulmonis str. KUL50. prokMSA_id:034660 AF093131 Tsukamurella sp. AM4.1 prokMSA_id:031438 AF131627 Tsukamurella sp. IM-6287 prokMSA_id:045059 AF131628 Tsukamurella sp. IM-7430 prokMSA_id:013277 AF150494 Tsukamurella U5 str. U5. prokMSA_id:069803 AF272835 Tsukamurella columbiensis complete prokMSA_id:045072 AF283280 Tsukamurella paurometabola complete prokMSA_id:020974 AF283281 Tsukamurella inchonensis strain ATCC700082 complete prokMSA_id:023307 AF283282 Tsukamurella inchonensis strain ATCC25938 complete prokMSA_id:042701 AF283283 Tsukamurella strandjordae strain ATCCBAA-173 complete prokMSA_id:047206 AF475083 Tsukamurella tyrosinosolvens prokMSA_id:084348 AY238512 Tsukamurella spumae strain N1173 complete prokMSA_id:086173 AY238513 Tsukamurella spumae strain N1176 complete prokMSA_id:083812 AY238514 Tsukamurella tyrosinosolvens strain DSM 44234 complete prokMSA_id:086153 AY253916 Tsukamurella tyrosinosolvens strain M95570 prokMSA_id:086558 AY254698 Tsukamurella pulmonis strain M67570 prokMSA_id:086078 AY254699 Tsukamurella tyrosinosolvens strain M12400 prokMSA_id:086184 AY259830 Tsukamurella tyrosinosolvens prokMSA_id:091598 AY333425 Tsukamurella pseudospumae prokMSA_id:013270 X80628 Tsukamurella paurometabola DSM 20162 . prokMSA_id:013267 X85955 Tsukamurella inchonensis str. IMMIB D-771 DSM 44067 . prokMSA_id:013271 X92981 Tsukamurella pulmonis IMMIB D-1321 . prokMSA_id:013276 Y12245 Tsukamurella tyrosinovorans str. D-1498. prokMSA_id:013274 Y12246 Tsukamurella tyrosinovorans str. D-1397. prokMSA_id:013273 Y12247 Tsukamurella tyrosinovorans str. D-1437. prokMSA_id:013275 Y12248 Tsukamurella tyrosinovorans str. D-1411. prokMSA_id:013278 Z36933 Tsukamurella paurometabola str. N663 NCTC 10741. prokMSA_id:013279 Z37150 Tsukamurella spumae str. M. Goodfellow N1171 strain. prokMSA_id:013269 Z37151 Tsukamurella paurometabola. prokMSA_id:013282 Z46751 Tsukamurella paurometabola DSM 20162 . 2.30.1.13.1.2.002 OTU 2 seqs prokMSA_id:065423 AF513097 clone 53 prokMSA_id:065416 AF513105 clone 799 2.30.1.13.1.2.003 OTU 1 seq prokMSA_id:078033 AB074644 actinobacterium clone:APe2_64 2.30.1.13.1.2.999 poor quality 19 seqs prokMSA_id:075581 AB075129 clone:TCS3 prokMSA_id:075627 AF432708 clone N12.44WL prokMSA_id:031736 AF441324 PAH-contaminated sludge PB-29 prokMSA_id:035976 AF441325 PAH-contaminated sludge PB-30 prokMSA_id:026019 AF441326 PAH-contaminated sludge PB-31 prokMSA_id:042177 AF475937 Tsukamurella sp. 051001 prokMSA_id:066752 AF502958 Marine actinobacterium K362 prokMSA_id:057985 AF544263 actinobacterium isolate T30 prokMSA_id:057973 AF544276 actinobacterium isolate T56 prokMSA_id:096147 AY262285 Tsukamurella inchonensis clone F7 prokMSA_id:097935 AY262286 Tsukamurella tyrosinosolvens clone F6 prokMSA_id:098491 AY262287 Tsukamurella tyrosinosolvens clone F5 prokMSA_id:096176 AY262288 Tsukamurella tyrosinosolvens clone F4 prokMSA_id:097318 AY262289 Tsukamurella tyrosinosolvens clone F3 prokMSA_id:097152 AY262290 Tsukamurella pulmonis clone F2 prokMSA_id:095555 AY262291 Tsukamurella paurometabola clone F1 prokMSA_id:013280 NONE Tsukamurella paurometabola DSM 20162 . prokMSA_id:013268 X53206 Tsukamurella paurometabola DSM 20162 . prokMSA_id:013281 X53207 Tsukamurella paurometabola str. N663 NCTC 10741. 2.30.1.13.2 CORYNEBACTERIUM_GROUP 601 seqs 2.30.1.13.2.1 GRD.AMARAE_SUBGROUP 65 seqs 2.30.1.13.2.1.004 OTU 7 seqs prokMSA_id:013298 AF020329 Gordonia amarae str. ASAC1. prokMSA_id:013299 AF020330 Gordonia amarae str. SE-102 ATCC 27809. prokMSA_id:013300 AF020331 Gordonia amarae str. ASF3. prokMSA_id:013301 AF020332 Gordonia amarae str. NM23. prokMSA_id:013310 X75902 Gordonia amarae str. N667 ATCC 27808 . prokMSA_id:013307 X80601 Gordonia amarae str. N667 ATCC 27808 . prokMSA_id:013296 X80635 Gordonia amarae. 2.30.1.13.2.1.005 OTU 1 seq prokMSA_id:013303 X87340 Gordonia hydrophobica str. 1610/1b DSM 44015 . 2.30.1.13.2.1.006 OTU 1 seq prokMSA_id:013302 X93485 Gordonia hirsuta str. K718a DSM 44140 . 2.30.1.13.2.1.007 OTU 1 seq prokMSA_id:071243 AF380834 Gordonia sinesedis 2.30.1.13.2.1.008 OTU 1 seq prokMSA_id:031840 X85238 Gordonia-like sp. strain J82 2.30.1.13.2.1.009 OTU 1 seq prokMSA_id:032142 X85245 Gordonia sp. strain J4 2.30.1.13.2.1.010 OTU 1 seq prokMSA_id:036832 AJ251724 Gordonia spumae strain T4 2.30.1.13.2.1.012 OTU 29 seqs prokMSA_id:013292 AB010903 Gordonia IBT2679-051 str. IBT2679-051. prokMSA_id:047244 AB065369 Gordonia alkalivorans prokMSA_id:013293 AF101416 Gordonia 213E str. 213E. prokMSA_id:013294 AF101417 Gordonia 213F str. 213F. prokMSA_id:013313 AF101418 Gordonia RR str. RR. prokMSA_id:025110 AF148947 Gordonia nitida prokMSA_id:013284 AF154833 Gordonia terrae str. MZ 230973. prokMSA_id:041790 AF323266 Gram positive W5P-2 prokMSA_id:041303 AF380930 Gordonia namibiensis NAM-BN063A prokMSA_id:038169 AF380931 Gordonia namibiensis NAM-BN063B prokMSA_id:062869 AF397061 Gordonia terrae AB111113 prokMSA_id:035930 AF432348 Gordonia sp. HD321 prokMSA_id:016517 AF467984 Gordonia terrae strain COE-O1 prokMSA_id:068728 AF479377 Glacial ice SIA1K-2A1 prokMSA_id:064242 AF517683 PSRB3 prokMSA_id:017608 AJ312907 Gordonia westfalica strain Kb1/Kb2 prokMSA_id:042155 AJ416151 Gordonia sihwaniensis strain DSM 44576 prokMSA_id:096137 AJ586615 Gordonia rubripertinctus strain NCIMB 12566 prokMSA_id:069119 AY145535 Actinomycetales GP-7 prokMSA_id:088069 AY277554 Gordonia rubripertinctus strain AGP1-3 prokMSA_id:090273 AY294405 Gordonia nitida complete prokMSA_id:013283 X79286 Gordonia terrae. prokMSA_id:013312 X80632 Gordonia rubropertincta. prokMSA_id:013291 X81915 Gordonia rubropertincta ATCC 25593. prokMSA_id:013311 X81922 Gordonia terrae ATCC 25594 . prokMSA_id:013287 X87318 str. SR 259. prokMSA_id:013286 X92482 Gordonia terrae CDC W5151. prokMSA_id:013285 X92483 Gordonia sp. prokMSA_id:027224 Y18054 Gordonia alkalivorans 2.30.1.13.2.1.013 OTU 1 seq prokMSA_id:064240 AF517684 Gordonia sp. PSRB12 2.30.1.13.2.1.014 OTU 2 seqs prokMSA_id:095720 AJ536840 clone 331 prokMSA_id:096577 AJ536841 clone 361 2.30.1.13.2.1.999 poor quality 20 seqs prokMSA_id:037577 AF296229 SE-42 prokMSA_id:077095 AJ517833 Gordonia sp. K58/B strain K58/B prokMSA_id:068811 AY037640 soil clone S133 prokMSA_id:046056 AY039464 Earthworm cast NC10 prokMSA_id:097406 AY262331 Gordonia bronchialis clone C2 prokMSA_id:086816 AY268240 clone E8 small subunit prokMSA_id:086994 AY268341 clone G3 small subunit prokMSA_id:013295 X53202 Gordonia terrae DSM 43249 . prokMSA_id:013290 X78654 clone SMKN12. prokMSA_id:013306 X78655 clone SMKN14. prokMSA_id:013308 X78656 clone SMKN15. prokMSA_id:013305 X78657 clone SMKN17. prokMSA_id:070442 X78660 sp.SMKN27 prokMSA_id:013288 X78660 clone SMKN27. prokMSA_id:013309 X78661 clone SMKN29. prokMSA_id:073146 X78661 sp.SMKN29 prokMSA_id:013304 X78662 clone SMKN35. prokMSA_id:013289 X78663 clone SMKN4. prokMSA_id:013297 X82243 Gordonia amarae. prokMSA_id:048423 X85243 Gordonia sp. strain J59 2.30.1.13.2.2 GRD.SPUTI_SUBGROUP 18 seqs 2.30.1.13.2.2.001 OTU 13 seqs prokMSA_id:097225 AB122026 Gordonia sp. IFM 10032 prokMSA_id:095805 AB122027 Gordonia sp. IFM 10148 prokMSA_id:013321 AF150493 Gordonia U1 str. U1. prokMSA_id:074558 AF251791 Gordonia jacobaea prokMSA_id:013317 X80627 Gordonia sputi DSM 44019 . prokMSA_id:013315 X80633 Gordonia aichiensis. prokMSA_id:013318 X80634 Gordonia sputi. prokMSA_id:013323 X81923 Gordonia sputi CIP 1833.89 . prokMSA_id:013316 X81924 Gordonia sputi CIP 1835.89. prokMSA_id:013314 X81925 Gordonia aichiensis ATCC 33611 . prokMSA_id:013322 X81927 Gordonia sputi CIP 1781.88. prokMSA_id:013320 X92481 Gordonia CDC W4604 CDC W4604. prokMSA_id:013319 X92484 Gordonia sputi CDC W5640. 2.30.1.13.2.2.999 poor quality 5 seqs prokMSA_id:046608 AF078364 Grassland soil clone sl2_503 prokMSA_id:096204 AY262329 Gordonia sputi clone C4 prokMSA_id:096953 AY262330 Gordonia sputi clone C3 prokMSA_id:098858 AY262332 Gordonia aichiensis clone C1 prokMSA_id:087606 AY288507 Gordonia columbarii 2.30.1.13.2.3 GRD.BRONCHIALIS_SUBGROUP 18 seqs 2.30.1.13.2.3.005 OTU 11 seqs prokMSA_id:069925 AB004729 Gordonia rhizophera strain IFO16068T prokMSA_id:013325 AB023368 Gordonia rhizosphera IFO 16247. prokMSA_id:025722 AB054838 Gordonia polyisoprenivorans strain:P8219 prokMSA_id:038457 AF416719 Gordonia polyisoprenivorans prokMSA_id:073085 AJ313023 Gordonia sp. MN 110a isolate MN 110a prokMSA_id:017721 AJ344450 Gordonia polyisoprenivorans strain VH2 prokMSA_id:088695 AY278367 Gordonia polyisoprenivorans prokMSA_id:013329 X75903 Gordonia bronchialis. prokMSA_id:013324 X79287 Gordonia bronchialis. prokMSA_id:013326 X81919 Gordonia bronchialis CIP 1780.88 . prokMSA_id:013327 Y18310 Gordonia polyisoprenivorans DSM 44302. 2.30.1.13.2.3.006 OTU 1 seq prokMSA_id:064617 AF467354 Gordonia sp. clone 1592 2.30.1.13.2.3.007 OTU 1 seq prokMSA_id:064754 AY115594 Gordonia sp. FWA92 2.30.1.13.2.3.008 OTU 1 seq prokMSA_id:065225 AF512840 Rhodococcus rhodnii specimen-voucher CNCM 2206 2.30.1.13.2.3.009 OTU 1 seq prokMSA_id:075420 AY154538 earthworm intestine clone lw16 2.30.1.13.2.3.999 poor quality 3 seqs prokMSA_id:083426 AB107114 Gordonia sp. TM414 prokMSA_id:075152 AY159167 MF_isolate_33 prokMSA_id:013328 X53201 Gordonia bronchialis DSM 43247 . 2.30.1.13.2.4 SK.PINIFORMIS_SUBGROUP 4 seqs 2.30.1.13.2.4.001 OTU 2 seqs prokMSA_id:046901 AJ416152 Skermania piniformis strain DSM 43998T prokMSA_id:013330 Z35435 Skermania piniformis str. UQM3063 IFO 15059 . 2.30.1.13.2.4.002 OTU 1 seq prokMSA_id:055796 AF507505 soil clone S0131 2.30.1.13.2.4.999 poor quality 1 seq prokMSA_id:013331 X82242 Skermania piniformis. 2.30.1.13.2.5 WLM.MURALIS_SUBGROUP 8 seqs 2.30.1.13.2.5.001 OTU 1 seq prokMSA_id:013333 AB010909 Williamsia maris strain:SJS0289-JS1 2.30.1.13.2.5.002 OTU 1 seq prokMSA_id:013332 Y17384 Williamsia muralis str. MA140/96. 2.30.1.13.2.5.003 OTU 1 seq prokMSA_id:041242 AB038407 Chibacore 1500 2.30.1.13.2.5.999 poor quality 5 seqs prokMSA_id:026656 AF143750 actinomycete clone A7 prokMSA_id:066650 AF432246 Ellin422 prokMSA_id:078735 AF547051 303 prokMSA_id:024527 AJ233561 clone WR169 prokMSA_id:062286 AY124432 actinobacterium clone SDa10 2.30.1.13.2.6 DZ.MARIS_SUBGROUP 50 seqs 2.30.1.13.2.6.004 OTU 1 seq prokMSA_id:013338 X86632 Rhodococcus sp. str. AC-43. 2.30.1.13.2.6.008 OTU 31 seqs prokMSA_id:013340 AB002634 str. HTA 474. prokMSA_id:013342 AB010904 Dietzia JTS6048-306 str. JTS6048-306. prokMSA_id:013339 AB010905 Dietzia JTS6455-250 str. JTS6455-250. prokMSA_id:034366 AB049630 Dietzia psychroalcalophilus prokMSA_id:078736 AB094465 Dietzia sp. 2216.35.9 prokMSA_id:089054 AF537361 Dietzia maris strain RE20 prokMSA_id:072130 AJ244662 Dietzia maris like sp. V4.BE.23 prokMSA_id:079063 AJ536443 Dietzia natronolimnaea isolate 6:22 633BP prokMSA_id:038355 AY028326 Dietzia sp. ES18 prokMSA_id:077352 AY167848 Dietzia maris strain SAFR-020 prokMSA_id:077557 AY167849 Dietzia maris strain SAFR-019 prokMSA_id:081642 AY205297 Dietzia sp. CR1-3 prokMSA_id:093589 AY360061 Dietzia daqingensis strain 32D prokMSA_id:093197 AY360062 Dietzia maris strain 263 prokMSA_id:016387 D87093 Dietzia maris prokMSA_id:013345 X76704 Rhodococcus sp. prokMSA_id:013334 X79290 Dietzia maris str. IMV 195; AUCNM-A-593; VKM Ac-593 DSM 43672 . prokMSA_id:013341 X79291 Dietzia maris DSM 46102. prokMSA_id:013344 X81920 Dietzia maris str. IMV 195; AUCNM-A-593; VKM Ac-593 ATCC 35013 . prokMSA_id:020469 X92156 sp. Little Lake Naivasha isolate 14LN1 prokMSA_id:043960 X92157 Dietzia natronolimnaea strain 15LN1; CBS 107.95 prokMSA_id:035177 Y08311 D.maris prokMSA_id:020345 Y08312 Dietzia sp. strain CIP104289 prokMSA_id:037758 Y08314 Dietzia sp. strain R18 prokMSA_id:019332 Y08315 Dietzia sp. strain R19 prokMSA_id:030014 Y08316 Dietzia sp. strain R23 prokMSA_id:046127 Y08317 Dietzia sp. strain R30 prokMSA_id:044005 Y08318 Dietzia sp. strain R32 prokMSA_id:013335 Y17518 Dietzia 147 str. 147. prokMSA_id:013336 Y17519 Dietzia 148 str. 148. prokMSA_id:013337 Y18883 unnamed organism. 2.30.1.13.2.6.009 OTU 1 seq prokMSA_id:064244 AF517682 PSRB11 2.30.1.13.2.6.010 OTU 1 seq prokMSA_id:065425 AF513096 clone 5 2.30.1.13.2.6.011 OTU 1 seq prokMSA_id:078623 AY189620 clone EarCan093 2.30.1.13.2.6.999 poor quality 15 seqs prokMSA_id:069656 AF530924 Actinobacterium sj41 prokMSA_id:057988 AF544257 actinobacterium isolate T16 prokMSA_id:057983 AF544265 actinobacterium isolate T34 prokMSA_id:056257 AF544269 actinobacterium isolate T41 prokMSA_id:057980 AF544270 actinobacterium isolate T43 prokMSA_id:057956 AF544295 actinobacterium isolate T08 prokMSA_id:057928 AF544332 actinobacterium isolate M12 prokMSA_id:057907 AF544357 actinobacterium isolate D43 prokMSA_id:057896 AF544368 actinobacterium isolate D61 prokMSA_id:022029 AJ298928 Dietzia sp. d30 strain d30 prokMSA_id:054841 AJ404594 US18 prokMSA_id:057529 AJ516050 Dietzia sp. B2/13 strain B2/13 prokMSA_id:078835 AJ536442 Dietzia natronolimnaea isolate 6:22 639BP prokMSA_id:062329 AY124381 actinobacterium clone ASa03 prokMSA_id:013343 Z69275 clone JN10c. 2.30.1.13.2.7 COR.XEROSIS_SUBGROUP 19 seqs 2.30.1.13.2.7.002 OTU 1 seq prokMSA_id:013354 AF115939 Corynebacterium Corynebacterium sp. MTcory13R. 2.30.1.13.2.7.004 OTU 13 seqs prokMSA_id:013349 AF024653 Corynebacterium xerosis str. K132. prokMSA_id:013348 AF145257 Corynebacterium xerosis str. 71376. prokMSA_id:073485 AJ292762 Corynebacterium freneyi strain 20695110 prokMSA_id:037739 AJ292763 Corynebacterium freneyi strain 20395347 prokMSA_id:082042 AY210513 Corynebacterium freneyi strain 116594 prokMSA_id:083313 AY230773 Corynebacterium sp. 'Smarlab BioMol-2301292' prokMSA_id:013350 X81914 Corynebacterium xerosis ATCC 373 . prokMSA_id:013352 X82050 Corynebacterium asperum CIP 52.13. prokMSA_id:013355 X82057 Corynebacterium amycolatum CIP 103452 . prokMSA_id:013353 X84244 Corynebacterium amycolatum NCFB 2768 . prokMSA_id:013347 X84446 Corynebacterium xerosis DSM 20743 . prokMSA_id:022734 Z33614 Corynebacterium CDC group I-2 F5771 prokMSA_id:040867 Z33615 Corynebacterium CDC group F-2 A5608 2.30.1.13.2.7.999 poor quality 5 seqs prokMSA_id:067015 AF504927 Mycobacterium smegmatis strain SS/AIIMS/ENV1 prokMSA_id:040368 AJ405029 A7-K1 clone A7-K1 prokMSA_id:051566 AJ405050 A3-K2 clone A3-K2 prokMSA_id:013351 M59058 Corynebacterium xerosis ATCC 373 . prokMSA_id:013346 U02895 Corynebacterium xerosis ATCC 373 . 2.30.1.13.2.8 COR.GLUTAMICUM_SUBGROUP 55 seqs 2.30.1.13.2.8.001 OTU 2 seqs prokMSA_id:013365 X82053 Corynebacterium callunae CCUG 28793. prokMSA_id:013363 X84251 Corynebacterium callunae NCIMB 10338 . 2.30.1.13.2.8.002 OTU 9 seqs prokMSA_id:022730 AB055963 Corynebacterium efficiens strain:YS-314 prokMSA_id:018481 AB055964 Corynebacterium efficiens strain:YS-52 prokMSA_id:071077 AB055965 Corynebacterium efficiens strain:YS-155 prokMSA_id:072099 AP005217 Corynebacterium efficiens YS-314 complete genome section 4/11 prokMSA_id:070786 AP005219 Corynebacterium efficiens YS-314 complete genome section 6/11 prokMSA_id:069327 AP005222 Corynebacterium efficiens YS-314 complete genome section 9/11 prokMSA_id:069308 AP005223 Corynebacterium efficiens YS-314 complete genome section 10/11 prokMSA_id:055922 NC_004369 Corynebacterium efficiens YS-314 complete genome prokMSA_id:013364 X89005 Corynebacterium sp. str. EL-180. 2.30.1.13.2.8.004 OTU 1 seq prokMSA_id:013361 Y12792 ATCC 13869. 2.30.1.13.2.8.010 OTU 36 seqs prokMSA_id:030193 AF314192 Corynebacterium glutamicum rrnE operon complete prokMSA_id:074149 AF426144 Corynebacterium glutamicum strain ATCC 19165 prokMSA_id:073254 AF426145 Corynebacterium glutamicum strain NCIB 9666 prokMSA_id:071128 AF426146 Corynebacterium glutamicum strain ATCC 14399 prokMSA_id:071194 AF426147 Corynebacterium glutamicum strain WS1863 prokMSA_id:064400 AF426148 Corynebacterium glutamicum strain WS1912 prokMSA_id:072298 AF426149 Corynebacterium glutamicum strain DSM 20300T prokMSA_id:055669 AP005274 Corynebacterium glutamicum ATCC 13032 complete genome section 1/10 prokMSA_id:062383 AP005276 Corynebacterium glutamicum ATCC 13032 complete genome section 3/10 prokMSA_id:062382 AP005278 Corynebacterium glutamicum ATCC 13032 complete genome section 5/10 prokMSA_id:056681 AP005282 Corynebacterium glutamicum ATCC 13032 complete genome section 9/10 prokMSA_id:062381 AP005283 Corynebacterium glutamicum ATCC 13032 complete genome section 10/10 prokMSA_id:071909 AY017088 Brevibacterium chang-fua prokMSA_id:064460 AY017089 Brevibacterium glutamigenes prokMSA_id:055240 AY017090 Brevibacterium saccharolyticum prokMSA_id:064458 AY017091 Brevibacterium seonmiso prokMSA_id:064457 AY017093 Brevibacterium taipei prokMSA_id:064456 AY017094 Brevibacterium thiogenitalis prokMSA_id:070597 AY017095 Microbacterium sp. ATCC 15283 prokMSA_id:070310 AY017096 Corynebacterium glutamicum ATCC 13059 prokMSA_id:070328 AY017097 Corynebacterium glutamicum ATCC 13060 prokMSA_id:064452 AY017099 Corynebacterium glutamicum ATCC 13286 prokMSA_id:064451 AY017100 Corynebacterium glutamicum ATCC 13287 prokMSA_id:073358 AY017101 Corynebacterium glutamicum ATCC 15025 prokMSA_id:064449 AY017102 Corynebacterium glutamicum ATCC 13746 prokMSA_id:070180 AY017103 Corynebacterium glutamicum ATCC 21517 prokMSA_id:064459 AY017107 Corynebacterium glutamicum DSM 20163 prokMSA_id:072296 AY017109 Corynebacterium glutamicum DSM 20137 prokMSA_id:064442 AY017111 Corynebacterium glutamicum ATCC 21492 prokMSA_id:013356 X80620 Rhodococcus globerulus DSM 43953. prokMSA_id:013357 X80629 Corynebacterium glutamicum DSM 20300 . prokMSA_id:013362 X82061 Corynebacterium glutamicum IAM 12435 . prokMSA_id:013359 X84240 Corynebacterium "acetoacidophilum" CIP 103776. prokMSA_id:013358 X84257 Corynebacterium glutamicum NCIMB 10025 . prokMSA_id:034960 Y11001 Corynebacterium sp. T14433 prokMSA_id:013360 Z46753 Corynebacterium glutamicum NCIMB 10025 . 2.30.1.13.2.8.011 OTU 1 seq prokMSA_id:073587 AY017098 Corynebacterium glutamicum ATCC 13232 2.30.1.13.2.8.999 poor quality 6 seqs prokMSA_id:025869 AF175600 WJGRT-39 prokMSA_id:023651 AF392801 clone LBG1 prokMSA_id:036609 AJ295475 rape rhizosphere wr0014 prokMSA_id:073715 AY017104 Corynebacterium glutamicum ATCC 21179 prokMSA_id:070688 AY017108 Corynebacterium glutamicum ATCC 14067 prokMSA_id:072652 AY017110 Corynebacterium glutamicum ATCC 13655 2.30.1.13.2.9 COR.UREALYTICUM_SUBGROUP 96 seqs 2.30.1.13.2.9.001 OTU 2 seqs prokMSA_id:069669 AF537598 Corynebacterium kroppenstedtii isolate 00-0244 prokMSA_id:013390 Y10077 Corynebacterium kroppenstedtii CCUG 35717 . 2.30.1.13.2.9.002 OTU 7 seqs prokMSA_id:016747 AB035918 Corynebacterium sp. YM204B prokMSA_id:091111 AB116137 Corynebacterium variabile strain:T133 prokMSA_id:091216 AB116139 Low G+C Gram-positive T135 strain:T135 prokMSA_id:043991 AF276640 Corynebacterium sp. IC10 prokMSA_id:013386 AJ222815 Corynebacterium variabilis str. AC 256 DSM 20132. prokMSA_id:013387 AJ222816 Corynebacterium variabilis str. AC 256 DSM 20536. prokMSA_id:013388 AJ222817 LMG 3820. 2.30.1.13.2.9.003 OTU 48 seqs prokMSA_id:023997 AF311389 Corynebacterium bovis strain 32 prokMSA_id:037493 AF311390 Corynebacterium bovis strain 33 prokMSA_id:074552 AF311391 Corynebacterium bovis strain 34 prokMSA_id:045174 AF311392 Corynebacterium bovis strain 36 prokMSA_id:030812 AF311393 Corynebacterium bovis strain 38 prokMSA_id:043566 AF311394 Corynebacterium bovis strain 39 prokMSA_id:026616 AF311395 Corynebacterium bovis strain 41 prokMSA_id:043368 AF311396 Corynebacterium bovis strain 50 prokMSA_id:027527 AF311397 Corynebacterium bovis strain 51 prokMSA_id:049613 AF311398 Corynebacterium bovis strain 52 prokMSA_id:042585 AF311399 Corynebacterium bovis strain 53 prokMSA_id:034732 AF311400 Corynebacterium bovis strain 54 prokMSA_id:047588 AF311401 Corynebacterium bovis strain 55 prokMSA_id:024259 AF311402 Corynebacterium bovis strain 62 prokMSA_id:023969 AF311403 Corynebacterium bovis strain 64 prokMSA_id:030760 AF311404 Corynebacterium bovis strain 65 prokMSA_id:035145 AF311405 Corynebacterium bovis strain 66 prokMSA_id:038365 AF311406 Corynebacterium bovis strain 67 prokMSA_id:034906 AF311407 Corynebacterium bovis strain 68 prokMSA_id:035805 AF311410 Corynebacterium bovis strain 89 prokMSA_id:035923 AF311411 Corynebacterium bovis strain 96 prokMSA_id:035972 AF311412 Corynebacterium bovis strain 97 prokMSA_id:021243 AF311414 Corynebacterium bovis strain 114 prokMSA_id:033060 AF311415 Corynebacterium bovis strain 115 prokMSA_id:044972 AF311416 Corynebacterium bovis strain 136 prokMSA_id:037776 AF311417 Corynebacterium bovis strain 139 prokMSA_id:037725 AF311418 Corynebacterium bovis strain 140 prokMSA_id:031503 AF311419 Corynebacterium bovis strain 143 prokMSA_id:026444 AF311421 Corynebacterium bovis strain 159 prokMSA_id:019039 AF311422 Corynebacterium bovis strain 172 prokMSA_id:045755 AF311423 Corynebacterium bovis strain 184 prokMSA_id:048907 AF311424 Corynebacterium bovis strain 185 prokMSA_id:021189 AF311425 Corynebacterium bovis strain 196 prokMSA_id:045238 AF311426 Corynebacterium bovis strain 197 prokMSA_id:046369 AF311428 Corynebacterium bovis strain 225 prokMSA_id:031837 AF311429 Corynebacterium bovis strain 226 prokMSA_id:044615 AF311430 Corynebacterium bovis strain 230 prokMSA_id:045770 AF311431 Corynebacterium bovis strain 231 prokMSA_id:047923 AF311432 Corynebacterium bovis strain 232 prokMSA_id:052118 AF311433 Corynebacterium bovis strain 233 prokMSA_id:023835 AF311434 Corynebacterium bovis strain 234 prokMSA_id:051875 AF311435 Corynebacterium bovis strain 236 prokMSA_id:017694 AF311436 Corynebacterium bovis strain 238 prokMSA_id:070297 AF537590 Corynebacterium bovis isolate 99-0033 prokMSA_id:013384 AJ222965 Corynebacterium bovis str. 5232 and 4428/4. prokMSA_id:075132 AY168882 Corynebacterium bovis prokMSA_id:013383 X82051 Corynebacterium bovis NCTC 3224 . prokMSA_id:013381 X84444 Corynebacterium bovis NCTC 3224 . 2.30.1.13.2.9.004 OTU 1 seq prokMSA_id:013382 D38575 Corynebacterium bovis ATCC 7715 . 2.30.1.13.2.9.008 OTU 1 seq prokMSA_id:013378 U87820 Corynebacterium "genitalium" ATCC 33033. 2.30.1.13.2.9.011 OTU 1 seq prokMSA_id:013375 U87816 Corynebacterium jeikeium ATCC 43216. 2.30.1.13.2.9.012 OTU 1 seq prokMSA_id:013374 U87818 Corynebacterium "genitalium" ATCC 33031. 2.30.1.13.2.9.013 OTU 3 seqs prokMSA_id:013371 AJ243819 Corynebacterium auriscanis CCUG 39784. prokMSA_id:019141 AJ243820 Corynebacterium auriscarnis strain CCUG 39783 prokMSA_id:013372 Y13777 Corynebacterium auriscanis str. M135/96/2. 2.30.1.13.2.9.014 OTU 1 seq prokMSA_id:013370 AB004730 Corynebacterium terpenotabidum IFO 14764. 2.30.1.13.2.9.016 OTU 8 seqs prokMSA_id:013377 AF115940 Corynebacterium Corynebacterium sp. MTcory14R. prokMSA_id:022688 AF115954 Corynebacterium sp. MT13M86 prokMSA_id:071101 AF537594 Corynebacterium falsenii isolate 97-0205 prokMSA_id:013379 U87815 Corynebacterium jeikeium ATCC 43217. prokMSA_id:013373 U87823 Corynebacterium jeikeium ATCC 43734 . prokMSA_id:013380 X82062 Corynebacterium jeikeium CIP 103337 . prokMSA_id:013376 X84250 Corynebacterium jeikeium NCTC 11913 . prokMSA_id:013369 Y13024 Corynebacterium falsenii str. CCUG 33651 DSM 44353 . 2.30.1.13.2.9.017 OTU 1 seq prokMSA_id:013368 U87824 Corynebacterium "genitalium" ATCC 33978. 2.30.1.13.2.9.018 OTU 1 seq prokMSA_id:013366 X81913 Corynebacterium urealyticum ATCC 43042 . 2.30.1.13.2.9.019 OTU 1 seq prokMSA_id:025532 AJ295841 Corynebacterium testudinoris strain CCUG 41823T 2.30.1.13.2.9.020 OTU 1 seq prokMSA_id:027440 AF423280 soil clone 586-1 2.30.1.13.2.9.021 OTU 1 seq prokMSA_id:028246 AF311413 Corynebacterium bovis strain 101 2.30.1.13.2.9.022 OTU 1 seq prokMSA_id:037219 AF311420 Corynebacterium bovis strain 150 2.30.1.13.2.9.023 OTU 1 seq prokMSA_id:064184 AF322369 Corynebacterium sp. 'Triatoma infestans' 2.30.1.13.2.9.024 OTU 1 seq prokMSA_id:076803 AY164392 clone DLIB-13 2.30.1.13.2.9.025 OTU 1 seq prokMSA_id:081096 AJ504424 Corynebacterium sp. S-81/02 strain S-81/02 2.30.1.13.2.9.999 poor quality 14 seqs prokMSA_id:043041 AB029413 13-13:2 prokMSA_id:068630 AB081826 seuence clone:C-03 prokMSA_id:073374 AF267148 Corynebacterium mooreparkensis LMG S-19265 prokMSA_id:073738 AF267149 Corynebacterium mooreparkensis DPC 5305 prokMSA_id:071019 AF267150 Corynebacterium mooreparkensis DPC 5315 prokMSA_id:073050 AF267151 Corynebacterium mooreparkensis DPC 5307 prokMSA_id:072145 AJ405043 A4-K2 clone A4-K2 prokMSA_id:032307 AJ421811 clone CFB-6MS-4 prokMSA_id:025759 AJ421822 clone CFB-6MS-5 prokMSA_id:057225 AJ518266 clone Mul2P2-87 prokMSA_id:013385 NONE Corynebacterium variabilis str. AC 256 NCDO 2097 . prokMSA_id:040541 U81765 clone vadinHA55 prokMSA_id:013389 X53185 Corynebacterium variabilis str. AC 256 NCIMB 9455 . prokMSA_id:013367 X84439 Corynebacterium urealyticum DSM 7109 . 2.30.1.13.2.10 COR.PSEUDOTUBERCULOSIS_SUBGROUP 52 seqs 2.30.1.13.2.10.001 OTU 2 seqs prokMSA_id:069384 AF537589 Corynebacterium argentoratense isolate 98-0075 prokMSA_id:013418 X83955 Corynebacterium argentoratense str. IBS B10697 CIP 104296 . 2.30.1.13.2.10.002 OTU 10 seqs prokMSA_id:013416 D37803 Corynebacterium renale str. HR56. prokMSA_id:071449 D37803 Corynebacterium renale strain:HR56 prokMSA_id:013415 D37804 Corynebacterium renale str. HR57. prokMSA_id:072642 D37804 Corynebacterium renale strain:HR57 prokMSA_id:013401 D37805 Corynebacterium renale str. HR58. prokMSA_id:069759 D37805 Corynebacterium renale strain:HR58 prokMSA_id:013404 D37806 Corynebacterium renale str. HR59. prokMSA_id:070082 D37806 Corynebacterium renale strain:HR59 prokMSA_id:013410 X81909 Corynebacterium renale str. Charita-a CIP 103421. prokMSA_id:013413 X84249 Corynebacterium renale str. Charita-a CIP 103421. 2.30.1.13.2.10.003 OTU 6 seqs prokMSA_id:013392 X81907 Corynebacterium pseudotuberculosis CIP 52.97. prokMSA_id:013397 X81911 Corynebacterium ulcerans CCUG 2708 . prokMSA_id:013402 X81912 Corynebacterium ulcerans CIP 54.53. prokMSA_id:013394 X81916 Corynebacterium pseudotuberculosis CIP 102968 . prokMSA_id:013414 X84255 Corynebacterium pseudotuberculosis NCTC 3450 . prokMSA_id:013400 X84256 Corynebacterium ulcerans NCTC 7910 . 2.30.1.13.2.10.004 OTU 1 seq prokMSA_id:013405 X84680 Corynebacterium vitarumen NCTC 20294 . 2.30.1.13.2.10.006 OTU 1 seq prokMSA_id:013399 X84443 Corynebacterium matruchotii DSM 20635 . 2.30.1.13.2.10.007 OTU 3 seqs prokMSA_id:026734 A58083 92 from Patent EP0745691 prokMSA_id:013398 X82059 Corynebacterium diphtheriae CIP 100721 . prokMSA_id:013395 X84248 Corynebacterium diphtheriae NCTC 11397 . 2.30.1.13.2.10.008 OTU 3 seqs prokMSA_id:071635 AF537593 Corynebacterium durum isolate 99-0047 prokMSA_id:058295 AF543285 Corynebacterium durum prokMSA_id:013396 Z97069 Corynebacterium durum str. IBS G15036 IBS G15036 . 2.30.1.13.2.10.010 OTU 4 seqs prokMSA_id:013403 D37802 Corynebacterium kutscheri ATCC 15677 . prokMSA_id:070499 D37802 Corynebacterium kutscheri prokMSA_id:013393 X81871 Corynebacterium kutscheri CIP 103423. prokMSA_id:013391 X82063 Corynebacterium kutscheri CIP 103423. 2.30.1.13.2.10.011 OTU 2 seqs prokMSA_id:033029 AF260434 Corynebacterium sp. ATCC43833 prokMSA_id:018932 AF262996 Corynebacterium sp. ATCC43833 2.30.1.13.2.10.012 OTU 4 seqs prokMSA_id:028787 AF201992 Human oral AC69 prokMSA_id:043893 AF287755 Corynebacterium sp. oral clone AK153 prokMSA_id:058291 AF543287 Corynebacterium matruchotii strain ChDC OS35 prokMSA_id:058290 AF543288 Corynebacterium matruchotii strain ChDC OS36 2.30.1.13.2.10.013 OTU 1 seq prokMSA_id:060234 AJ429234 Corynebacterium spheniscorum strain CCUG 45512T 2.30.1.13.2.10.014 OTU 2 seqs prokMSA_id:065332 AY101387 Boyliae praeputiale strain FD233 prokMSA_id:065331 AY101388 Boyliae praeputiale strain FD234 2.30.1.13.2.10.015 OTU 1 seq prokMSA_id:073471 AF366275 Corynebacterium sp. clone DS081 2.30.1.13.2.10.016 OTU 1 seq prokMSA_id:086061 AY226509 Corynebacterium halophilum 2.30.1.13.2.10.017 OTU 1 seq prokMSA_id:086131 AY244775 Corynebacterium sp. 2002-2300500 2.30.1.13.2.10.999 poor quality 10 seqs prokMSA_id:013406 AB012207 Corynebacterium sp. str. kpu 002. prokMSA_id:057958 AF544293 actinobacterium isolate T10 prokMSA_id:043577 AJ404509 Corynebacterium CB7 prokMSA_id:064003 AJ491828 Corynebacterium pseudotuberculosis strain B16 prokMSA_id:013411 D38576 Corynebacterium pseudotuberculosis str. OR1. prokMSA_id:013407 D38577 Corynebacterium pseudotuberculosis str. OT1. prokMSA_id:013409 D38578 Corynebacterium pseudotuberculosis str. S1. prokMSA_id:013417 D38579 Corynebacterium pseudotuberculosis. prokMSA_id:013412 M29553 Corynebacterium renale str. Charita-a ATCC 19412 . prokMSA_id:013408 X82065 Corynebacterium matruchotii CIP 81.82 . 2.30.1.13.2.11 COR.AFERMENTANS_SUBGROUP 105 seqs 2.30.1.13.2.11.002 OTU 6 seqs prokMSA_id:013456 AF010474 Corynebacterium thomssenii. prokMSA_id:013455 AF115942 Corynebacterium Corynebacterium sp. MTcory17R. prokMSA_id:069927 AF537605 Corynebacterium sundsvallense isolate 93-0639 prokMSA_id:071061 AF537606 Corynebacterium sundsvallense isolate 99-0121 prokMSA_id:072293 AF537607 Corynebacterium thomssenii isolate 97-0130 prokMSA_id:013454 Y09655 Corynebacterium sundsvallense. 2.30.1.13.2.11.003 OTU 1 seq prokMSA_id:013451 U87817 Corynebacterium "genitalium" ATCC 33030. 2.30.1.13.2.11.004 OTU 2 seqs prokMSA_id:038871 AF115929 Corynebacterium sp. MT2R prokMSA_id:013450 X84253 Corynebacterium "genitalium" NCTC 11859. 2.30.1.13.2.11.005 OTU 1 seq prokMSA_id:013449 U87821 Corynebacterium "genitalium" ATCC 33034. 2.30.1.13.2.11.006 OTU 2 seqs prokMSA_id:069866 AF537602 Corynebacterium riegelii isolate 99-0185 prokMSA_id:013448 Y14651 Corynebacterium riegelii. 2.30.1.13.2.11.009 OTU 2 seqs prokMSA_id:078722 AY189624 actinobacterium clone EarCan097 prokMSA_id:013446 X81873 Corynebacterium auris str. DZZM 328 DSM 44122 . 2.30.1.13.2.11.010 OTU 2 seqs prokMSA_id:069614 AF537597 Corynebacterium imitans isolate 01-0063 prokMSA_id:013445 Y09044 Corynebacterium sp. str. 2023. 2.30.1.13.2.11.011 OTU 2 seqs prokMSA_id:013444 X82066 Corynebacterium mycetoides. prokMSA_id:013441 X84241 Corynebacterium mycetoides NCTC 9864 . 2.30.1.13.2.11.012 OTU 1 seq prokMSA_id:013442 Y09045 Corynebacterium sp. str. 1944. 2.30.1.13.2.11.013 OTU 3 seqs prokMSA_id:013440 D37914 Corynebacterium cystitidis ATCC 29593 . prokMSA_id:013421 X82058 Corynebacterium cystitidis CIP 103424 . prokMSA_id:013428 X84252 Corynebacterium cystitidis NCTC 11863 . 2.30.1.13.2.11.014 OTU 1 seq prokMSA_id:013439 X81904 Corynebacterium sp. str. taxon 2 CDC G5911. 2.30.1.13.2.11.015 OTU 2 seqs prokMSA_id:013437 Y09569 Corynebacterium camporealensis str. CRS-51 CECT 4897 . prokMSA_id:013438 Y13427 Corynebacterium sp. str. 1 ex sheep. 2.30.1.13.2.11.017 OTU 3 seqs prokMSA_id:013432 AF115937 Corynebacterium Corynebacterium sp. MTcory5K. prokMSA_id:013434 AF115944 Corynebacterium Corynebacterium sp. MTcory21R. prokMSA_id:013435 AF115946 Corynebacterium Corynebacterium sp. MTcory24T. 2.30.1.13.2.11.020 OTU 4 seqs prokMSA_id:020324 AF115933 Corynebacterium sp. MT28T prokMSA_id:013427 AF115945 Corynebacterium Corynebacterium sp. MTcory11W. prokMSA_id:029375 AF115948 Corynebacterium sp. MT7ER prokMSA_id:043709 AF115949 Corynebacterium sp. MT11A 2.30.1.13.2.11.021 OTU 6 seqs prokMSA_id:031488 AF115952 Corynebacterium sp. MT30Y prokMSA_id:074005 AF537595 Corynebacterium glucuronolyticum isolate 98-0013 prokMSA_id:073162 AF537596 Corynebacterium glucuronolyticum isolate 98-0098 prokMSA_id:023811 AJ277970 Corynebacterium glucuronolyticum strain COR 232 prokMSA_id:038303 AJ277971 Corynebacterium glucuronolyticum strain COR 252 prokMSA_id:013425 X86688 Corynebacterium glucuronolyticum str. GF 838 DSM 44120 . 2.30.1.13.2.11.022 OTU 1 seq prokMSA_id:013424 U87819 Corynebacterium "genitalium" ATCC 33032. 2.30.1.13.2.11.025 OTU 20 seqs prokMSA_id:078871 AY189561 Turicella sp. clone EarCan034 prokMSA_id:078966 AY189564 Turicella sp. clone EarCan037 prokMSA_id:078605 AY189565 Turicella sp. clone EarCan038 prokMSA_id:079088 AY189566 Turicella sp. clone EarCan039 prokMSA_id:078809 AY189567 Turicella sp. clone EarCan040 prokMSA_id:078877 AY189568 Turicella sp. clone EarCan041 prokMSA_id:078864 AY189570 Turicella sp. clone EarCan043 prokMSA_id:078892 AY189571 Turicella sp. clone EarCan044 prokMSA_id:078590 AY189572 Turicella sp. clone EarCan045 prokMSA_id:078462 AY189573 Turicella sp. clone EarCan046 prokMSA_id:078772 AY189574 Turicella sp. clone EarCan047 prokMSA_id:078572 AY189575 Turicella sp. clone EarCan048 prokMSA_id:078551 AY189576 Turicella sp. clone EarCan049 prokMSA_id:078880 AY189577 Turicella sp. clone EarCan050 prokMSA_id:078638 AY189578 Turicella sp. clone EarCan051 prokMSA_id:078995 AY189579 Turicella sp. clone EarCan052 prokMSA_id:078849 AY189580 Turicella sp. clone EarCan053 prokMSA_id:078707 AY189581 Turicella sp. clone EarCan054 prokMSA_id:013420 X73976 Turicella otitidis str. 234/92 DSM 8821 . prokMSA_id:016359 Z33617 T.otitidis CDC group ANF-1-like ATCC 51308 2.30.1.13.2.11.026 OTU 1 seq prokMSA_id:013419 X81872 Corynebacterium pseudogenitalium NCTC 11860. 2.30.1.13.2.11.027 OTU 17 seqs prokMSA_id:024392 AF115930 Corynebacterium sp. MT8R prokMSA_id:013431 AF115936 Corynebacterium Corynebacterium sp. MTcory3P. prokMSA_id:013433 AF115938 Corynebacterium Corynebacterium sp. MTcory8W. prokMSA_id:013436 AF115947 Corynebacterium Corynebacterium sp. MTcory19R. prokMSA_id:020360 AF227825 Corynebacterium sp. 47081 prokMSA_id:017363 AF227854 Corynebacterium sp. 96447 prokMSA_id:073330 AF537592 Corynebacterium coyleae isolate 97-0171 prokMSA_id:074212 AF537599 Corynebacterium mucifaciens isolate 87-0436 prokMSA_id:072264 AF537600 Corynebacterium mucifaciens isolate 01-0118 prokMSA_id:070911 AF537601 Corynebacterium mucifaciens isolate 97-0160 prokMSA_id:082663 AY244774 Corynebacterium sp. 2002-79006 prokMSA_id:071216 X81874 Corynebacterium afermentans prokMSA_id:013447 X81874 Corynebacterium afermentans str. DMMZ 545 DMMZ 525?. prokMSA_id:013457 X82054 Corynebacterium afermentans subsp. afermentans CIP 103499 . prokMSA_id:013422 X82055 Corynebacterium afermentans subsp. liphophilum CIP 103500 . prokMSA_id:013430 X96497 Corynebacterium coyleiae DMMZ 214 . prokMSA_id:013423 Y11200 Corynebacterium mucifaciens DMMZ 2278 . 2.30.1.13.2.11.028 OTU 1 seq prokMSA_id:025821 AJ297402 Corynebacterium capitovis strain CCUG 39779 strain 2.30.1.13.2.11.029 OTU 1 seq prokMSA_id:050265 AF227828 Corynebacterium sp. 61722 2.30.1.13.2.11.030 OTU 1 seq prokMSA_id:061783 AJ314919 Corynebacterium appendicis strain DSM 44531T 2.30.1.13.2.11.031 OTU 1 seq prokMSA_id:078429 AY189623 clone EarCan096 2.30.1.13.2.11.032 OTU 1 seq prokMSA_id:078453 AY189563 Turicella sp. clone EarCan036 2.30.1.13.2.11.033 OTU 1 seq prokMSA_id:078564 AY189569 Turicella sp. clone EarCan042 2.30.1.13.2.11.034 OTU 1 seq prokMSA_id:088316 AJ431634 Corynebacterium glaucum strain IMMIB R-5091 2.30.1.13.2.11.999 poor quality 21 seqs prokMSA_id:027538 AF115950 Corynebacterium sp. MT25Y prokMSA_id:073590 AF287754 Corynebacterium sp. oral strain A43SC prokMSA_id:057941 AF544316 actinobacterium isolate M28 prokMSA_id:057932 AF544329 actinobacterium isolate M23 prokMSA_id:057925 AF544336 actinobacterium isolate M03 prokMSA_id:038347 AJ001221 Corynebacterium sp. prokMSA_id:031839 AJ277972 Corynebacterium glucuronolyticum strain COR 259 prokMSA_id:040448 AJ277973 Corynebacterium glucuronolyticum strain COR 260 prokMSA_id:030780 AJ277974 Corynebacterium glucuronolyticum strain COR 261 prokMSA_id:038600 AJ277975 Corynebacterium glucuronolyticum strain COR 262 prokMSA_id:050689 AJ277976 Corynebacterium glucuronolyticum strain COR 178 prokMSA_id:031746 AJ404502 Corynebacterium CB5 prokMSA_id:020050 AJ404504 Corynebacterium CB8 prokMSA_id:049516 AJ404508 Corynebacterium CB4 prokMSA_id:030845 AJ405034 A2-K2 clone A2-K2 prokMSA_id:078443 AY189562 Turicella sp. clone EarCan035 prokMSA_id:013426 D83375 Corynebacterium sp. str. SC8. prokMSA_id:013453 X81905 Corynebacterium sp. str. taxon 1 CDC G4330. prokMSA_id:013452 X82493 Corynebacterium auris str. DZZM 328 DSM 44122 . prokMSA_id:013443 X84375 Corynebacterium seminale CIP 104297 . prokMSA_id:013429 X97107 str. TM72. 2.30.1.13.2.12 COR.FLAVESCENS_SUBGROUP 19 seqs 2.30.1.13.2.12.001 OTU 1 seq prokMSA_id:013469 X81908 Corynebacterium pilosum str. 46 Hara ATCC 29592 . 2.30.1.13.2.12.002 OTU 1 seq prokMSA_id:013468 D37915 Corynebacterium pilosum str. 46 Hara ATCC 29592 . 2.30.1.13.2.12.003 OTU 1 seq prokMSA_id:013467 X84246 Corynebacterium pilosum str. 46 Hara NCTC 11862 . 2.30.1.13.2.12.004 OTU 2 seqs prokMSA_id:013466 X82060 Corynebacterium flavescens CIP 69.5 . prokMSA_id:013463 X84441 Corynebacterium flavescens NCDO 1320 . 2.30.1.13.2.12.005 OTU 1 seq prokMSA_id:013465 AB010906 Corynebacterium sp. str. QKT1393-078. 2.30.1.13.2.12.006 OTU 1 seq prokMSA_id:013460 X89778 Corynebacterium sp. str. EL-68. 2.30.1.13.2.12.007 OTU 2 seqs prokMSA_id:082018 AY080983 Corynebacterium sp. clone ckl21 prokMSA_id:013459 X84440 Corynebacterium ammoniagenes CIP 101283 . 2.30.1.13.2.12.008 OTU 1 seq prokMSA_id:013458 X82056 Corynebacterium ammoniagenes CIP 101283 . 2.30.1.13.2.12.009 OTU 1 seq prokMSA_id:027896 Y11000 Corynebacterium sp. B55443 2.30.1.13.2.12.010 OTU 1 seq prokMSA_id:040564 AJ408210 equine intestinal sp. PL02 clone PL02 2.30.1.13.2.12.011 OTU 1 seq prokMSA_id:050892 AF267152 Corynebacterium casei LMG S-19264 2.30.1.13.2.12.999 poor quality 6 seqs prokMSA_id:042370 AF267154 Corynebacterium casei DPC 5294 prokMSA_id:017080 AF267155 Corynebacterium casei DPC 5300 prokMSA_id:027455 AF392752 clone CBF3 prokMSA_id:013461 X86606 Corynebacterium sp. str. AG-32. prokMSA_id:013462 X86607 Corynebacterium sp. str. S2-13. prokMSA_id:013464 Y10076 Corynebacterium sp. str. CORSP 31. 2.30.1.13.2.13 COR.MINUTISSIMUM_SUBGROUP 34 seqs 2.30.1.13.2.13.007 OTU 14 seqs prokMSA_id:013478 AF033314 Corynebacterium 'CDC B8037' CDC B8037. prokMSA_id:034059 AF115931 Corynebacterium sp. MT12R prokMSA_id:013481 AF115934 Corynebacterium Corynebacterium sp. MTcory1P. prokMSA_id:013482 AF115941 Corynebacterium Corynebacterium sp. MTcory16R. prokMSA_id:030005 AF220220 Corynebacterium nigricans sp. nov. prokMSA_id:069059 AF537608 Corynebacterium nigricans isolate 92-0360 prokMSA_id:057712 AJ309207 Corynebacterium aurimucosum strain IMMIB D-1488 prokMSA_id:057711 AJ315961 Corynebacterium aurimucosum strain IMMIB R-222 prokMSA_id:086381 AY227208 Corynebacterium nigricans prokMSA_id:094099 AY271720 Corynebacterium nigricans strain CN-2 prokMSA_id:088549 AY321294 Corynebacterium nigricans isolate 91-0032 prokMSA_id:013477 X84678 Corynebacterium minutissimum str. clone 1 NCTC 10288 . prokMSA_id:013479 X84679 Corynebacterium minutissimum str. clone 1 NCTC 10288 . prokMSA_id:013476 Y10999 Corynebacterium singulare str. B52218 IBS B52218 . 2.30.1.13.2.13.010 OTU 10 seqs prokMSA_id:023758 AF115951 Corynebacterium sp. MT17L prokMSA_id:070353 AF537603 Corynebacterium simulans isolate 81-0613 prokMSA_id:073498 AF537604 Corynebacterium simulans isolate 00-0186 prokMSA_id:013472 AJ012836 Corynebacterium sp. str. UCL301. prokMSA_id:013473 AJ012837 Corynebacterium sp. str. UCL553. prokMSA_id:013474 AJ012838 Corynebacterium sp. str. UCL557. prokMSA_id:045813 AY008302 Corynebacterium striatum prokMSA_id:013475 X81906 Corynebacterium xerosis IAM 12431. prokMSA_id:013470 X81910 Corynebacterium striatum CIP 81.15 . prokMSA_id:013471 X84442 Corynebacterium striatum NCTC 764 . 2.30.1.13.2.13.011 OTU 1 seq prokMSA_id:037997 AJ401282 Corynebacterium felinum strain CCUG 39943 2.30.1.13.2.13.012 OTU 1 seq prokMSA_id:074894 AY150562 Rhodococcus sp. 2.30.1.13.2.13.999 poor quality 8 seqs prokMSA_id:057931 AF544334 actinobacterium isolate M07 prokMSA_id:021190 AJ404505 Corynebacterium CB2 prokMSA_id:045963 AJ404506 Corynebacterium CB3 prokMSA_id:040218 AJ404507 Corynebacterium CB1 prokMSA_id:032305 D63354 Corynebacterium striatum prokMSA_id:037600 D63355 Corynebacterium mycetoides prokMSA_id:042109 U81644 clone vadinBA21 prokMSA_id:013480 X82064 Corynebacterium minutissimum str. clone 1 NCTC 10288 . 2.30.1.13.2.14 COR.MACGINLEYI_SUBGROUP 18 seqs 2.30.1.13.2.14.001 OTU 10 seqs prokMSA_id:025485 AF115928 Corynebacterium sp. MT4P prokMSA_id:067684 AF490772 Corynebacterium macginleyi prokMSA_id:083943 AJ439344 Corynebacterium segmentosum strain CIP107068 prokMSA_id:084689 AJ439345 Corynebacterium macginleyi strain CIP104099T prokMSA_id:083750 AJ439346 Corynebacterium accolens strain CIP104783T prokMSA_id:083558 AJ439347 Corynebacterium fastidiosum strain CIP103808 prokMSA_id:013483 X80499 Corynebacterium macginleyi str. JCL-2 CIP 104099 . prokMSA_id:013484 X80500 Corynebacterium accolens CCUG 28779 . prokMSA_id:013486 X84245 Corynebacterium "fastidiosum" CIP 103808. prokMSA_id:013487 X84437 Corynebacterium "segmentosum" NCTC 934. 2.30.1.13.2.14.002 OTU 1 seq prokMSA_id:013485 Y09806 Corynebacterium sp. str. MC8. 2.30.1.13.2.14.003 OTU 1 seq prokMSA_id:090728 AJ441057 Corynebacterium atypicalis strain R10176 2.30.1.13.2.14.004 OTU 1 seq prokMSA_id:092299 AJ566641 Corynebacterium caspium strain CCUG 44566T 2.30.1.13.2.14.999 poor quality 5 seqs prokMSA_id:071347 AJ289184 E2-K3 prokMSA_id:073755 AJ405042 A4-K1 clone A4-K1 prokMSA_id:043077 AJ405049 A3-K1 clone A3-K1 prokMSA_id:072732 AJ405055 A13-K1 clone A13-K1 prokMSA_id:059364 AY081207 DGGE band U4 2.30.1.13.2.15 COR.TUBERCULOSTEARICUM_SUBGROUP 30 seqs 2.30.1.13.2.15.001 OTU 24 seqs prokMSA_id:013494 AF018035 clone I-109. prokMSA_id:042890 AF115927 Corynebacterium sp. MT1P prokMSA_id:016531 AF115932 Corynebacterium sp. MT20T prokMSA_id:013490 AF115935 Corynebacterium Corynebacterium sp. MTcory2P. prokMSA_id:013491 AF115943 Corynebacterium Corynebacterium sp. MTcory20R. prokMSA_id:022102 AF234634 Corynebacterium sp. 61720 prokMSA_id:089305 AF443574 clone O-F-5 prokMSA_id:055629 AF510731 Corynebacterium tuberculostearicum prokMSA_id:019533 AJ291838 Corynebacterium sp. IrT-R5M2-141 prokMSA_id:083125 AJ438041 Corynebacterium sp. CIP102857 prokMSA_id:082897 AJ438042 Corynebacterium sp. CIP102645 prokMSA_id:085890 AJ438043 Corynebacterium sp. CIP102622 prokMSA_id:084608 AJ438044 Corynebacterium sp. CIP102590 prokMSA_id:082489 AJ438045 Corynebacterium sp. CIP102346 prokMSA_id:084542 AJ438046 Corynebacterium sp. CIP102211 prokMSA_id:083910 AJ438047 Corynebacterium sp. CIP102124 prokMSA_id:085185 AJ438048 Corynebacterium sp. CIP102076 prokMSA_id:084297 AJ438049 Corynebacterium sp. CIP101775 prokMSA_id:086463 AJ438050 Corynebacterium sp. CIP107291 prokMSA_id:082584 AJ438051 Corynebacterium sp. CIP107067 prokMSA_id:084459 AJ439348 Corynebacterium pseudogenitalium strain CIP106714 prokMSA_id:013492 X80498 Corynebacterium sp. CDC G5840. prokMSA_id:013488 X84247 Corynebacterium "tuberculostearicum" ATCC 35692. prokMSA_id:013489 Z73376 clone Ep_T1.167. 2.30.1.13.2.15.002 OTU 1 seq prokMSA_id:013493 U87822 Corynebacterium pseudogenitalium ATCC 33035. 2.30.1.13.2.15.999 poor quality 5 seqs prokMSA_id:023875 AF115953 Corynebacterium sp. MT9M86 prokMSA_id:057965 AF544286 actinobacterium isolate T24 prokMSA_id:049278 AJ404510 Corynebacterium CB9 prokMSA_id:045861 AJ405041 A5-K1 clone A5-K1 prokMSA_id:078589 AY189622 actinobacterium clone EarCan095 2.30.1.13.2.16 COR.PSEUDODIPHTHERITICUM_SUBGROUP 10 seqs 2.30.1.13.2.16.001 OTU 3 seqs prokMSA_id:073184 AF537591 Corynebacterium confusum isolate 99-0145 prokMSA_id:013499 Y15886 Corynebacterium confusum DMMZ 2439 . prokMSA_id:013500 Y15887 Corynebacterium confusum DMMZ 3259. 2.30.1.13.2.16.002 OTU 7 seqs prokMSA_id:082696 AJ439343 Corynebacterium pseudodiphthericum strain CIP103420T prokMSA_id:085717 AY244785 Corynebacterium propinquum prokMSA_id:084553 AY244786 Rothia mucilaginosa prokMSA_id:013496 X81917 Corynebacterium propinquum CIP 103792 . prokMSA_id:013498 X81918 Corynebacterium pseudodiphtheriticum CIP 103420 . prokMSA_id:013497 X84258 Corynebacterium pseudodiphtheriticum NCTC 11136 . prokMSA_id:013495 X84438 Corynebacterium propinquum CIP 103792 . 2.30.1.13.3 RCO.RHODOCHROUS_GROUP 78 seqs 2.30.1.13.3.008 OTU 1 seq prokMSA_id:013505 X92701 clone TM177. 2.30.1.13.3.011 OTU 1 seq prokMSA_id:020961 AF439261 Rhodococcus rhodochrous 2.30.1.13.3.012 OTU 1 seq prokMSA_id:024660 AF131484 Rhodococcus sp. IM-43760 2.30.1.13.3.013 OTU 1 seq prokMSA_id:034259 AY013691 Banisveld landfill BVC83 2.30.1.13.3.014 OTU 3 seqs prokMSA_id:039131 AJ290022 FukuS5 prokMSA_id:042263 AJ290080 FukuS24 prokMSA_id:098880 AJ575548 actinobacterium clone SW3 2.30.1.13.3.015 OTU 1 seq prokMSA_id:063301 AF523917 clone RCP2-103 2.30.1.13.3.016 OTU 1 seq prokMSA_id:065427 AF513094 clone 4 2.30.1.13.3.017 OTU 4 seqs prokMSA_id:068739 AF479362 Glacial ice SB12K-2-4 prokMSA_id:090777 AJ565419 Nocardioides sp. MWH-CaK6 isolate MWH-CaK6 prokMSA_id:077309 AY167844 Nocardioides fulvus strain SAFR-045 prokMSA_id:077501 AY167855 Nocardioides fulvus strain SAFR-005 2.30.1.13.3.018 OTU 1 seq prokMSA_id:069420 AJ511294 Nocardioides sp. ND6 2.30.1.13.3.020 OTU 42 seqs prokMSA_id:013508 AB010902 Rhodococcus sp. str. IBT2679-024. prokMSA_id:019630 AB066343 Rhodococcus sp. B184 prokMSA_id:083971 AB087282 Rhodococcus sp. AN-22 prokMSA_id:077648 AB098592 Rhodococcus sp. TUT1024 prokMSA_id:077968 AB098593 Rhodococcus sp. TUT1025 prokMSA_id:013504 AF103733 Rhodococcus YH1 str. YH1. prokMSA_id:036043 AF131483 Rhodococcus sp. IM-0792 prokMSA_id:023734 AF173005 Rhodococcus pyridinovorans prokMSA_id:013510 AF191343 Rhodococcus zopfii DSM 44108. prokMSA_id:051915 AF323255 Gram positive B1G-1B prokMSA_id:032848 AF350248 Rhodococcus ruber strain AS4.1187 prokMSA_id:064675 AF420413 Rhodococcus sp. USA-AN012 prokMSA_id:064670 AF420423 Rhodococcus sp. ARG-BN062 prokMSA_id:067233 AF447391 Rhodococcus aetherovorans strain 10bc312 prokMSA_id:067231 AF447392 Rhodococcus aetherovorans strain Bc663 prokMSA_id:054731 AF459741 Rhodococcus pyridinivorans strain R04 prokMSA_id:060987 AF529079 Rhodococcus sp. An prokMSA_id:013509 AJ007001 Rhodococcus sp. str. LB1. prokMSA_id:013514 AJ007002 Rhodococcus sp. str. LC1. prokMSA_id:013515 AJ007003 Rhodococcus sp. str. LG3. prokMSA_id:045855 AJ306401 Rhodococcus coprophilus isolate red NZRM 4029 prokMSA_id:043835 AJ306402 Rhodococcus coprophilus isolate orange NZRM 4028 prokMSA_id:055547 AJ457068 Rhodococcus sp. PA prokMSA_id:066761 AJ459106 Rhodococcus sp. HN strain HN prokMSA_id:055435 AY090021 Rhodococcus sp. PNAN 5 prokMSA_id:064753 AY114109 Rhodococcus sp. E33 prokMSA_id:063346 AY114177 Rhodococcus ruber strain AS 4.1038 prokMSA_id:082133 AY233201 Rhodococcus gordoniae strain W4937 prokMSA_id:082199 AY233202 Rhodococcus gordoniae strain MTCC 1534 prokMSA_id:085556 AY247275 Rhodococcus ruber M2 prokMSA_id:087677 AY286493 Rhodococcus sp. T104 prokMSA_id:039501 D87090 Rhodococcus rhodochrous prokMSA_id:018787 D87091 Rhodococcus rhodochrous prokMSA_id:043203 D87092 Rhodococcus sp. prokMSA_id:013511 U93340 Rhodococcus coprophilus JCM 3200 . prokMSA_id:013517 X79288 Rhodococcus rhodochrous str. 372 DSM 43241 . prokMSA_id:013513 X80624 Rhodococcus rhodochrous DSM 43274 . prokMSA_id:013503 X80625 Rhodococcus ruber DSM 43338 . prokMSA_id:013507 X80626 Rhodococcus coprophilus DSM 43347 . prokMSA_id:013506 X81928 Rhodococcus coprophilus ATCC 29080 . prokMSA_id:013501 X81934 Rhodococcus zopfii ATCC 51349 . prokMSA_id:013516 X81936 Rhodococcus rhodochrous str. 372 CIP 1759.88 . 2.30.1.13.3.021 OTU 1 seq prokMSA_id:077658 AJ271411 Corynebacterium sp. isolate PY11 2.30.1.13.3.022 OTU 1 seq prokMSA_id:082135 AJ549287 Nocardioides sp. NS/33 strain NS/33 2.30.1.13.3.023 OTU 1 seq prokMSA_id:084039 AY250898 actinobacterium clone TLT173 2.30.1.13.3.024 OTU 1 seq prokMSA_id:088910 AY281106 Rhodococcus erythropolis 2.30.1.13.3.025 OTU 1 seq prokMSA_id:091212 AY345538 clone LWSR-4 2.30.1.13.3.999 poor quality 17 seqs prokMSA_id:033796 AF125114 Aquatic STS_R2A_44 prokMSA_id:040519 AF130413 Aquatic STS_R2A_36 prokMSA_id:026097 AF273616 Rhodococcus rhodochrous isolate DY5 prokMSA_id:031887 AF273617 Rhodococcus rhodochrous isolate DY6 prokMSA_id:032935 AF353289 Tui2-2 prokMSA_id:028338 AF353688 Rhodococcus sp. PR-N14 prokMSA_id:057960 AF544291 actinobacterium isolate T14 prokMSA_id:057949 AF544308 actinobacterium isolate M08 prokMSA_id:074513 AJ290019 FukuS98 prokMSA_id:045799 AJ298938 Rhodococcus coprophilus strain d32 prokMSA_id:089919 AJ565926 Rhodococcus rhodochrous isolate B31 prokMSA_id:021022 AY072745 Rhodococcus pyridinivorans strain R04 prokMSA_id:096228 AY382310 Rhodococcus sp. C208 prokMSA_id:013502 M20905 Mycobacterium leprae. prokMSA_id:045201 U68711 Rhodococcus sp. 2N40 prokMSA_id:013518 X70295 Rhodococcus rhodochrous. prokMSA_id:013512 X81921 Rhodococcus rhodochrous ATCC 271 . 2.30.1.13.4 RCO.RHODNII_GROUP 5 seqs 2.30.1.13.4.001 OTU 4 seqs prokMSA_id:013521 X80621 Rhodococcus rhodnii str. N 445 DSM 43336 . prokMSA_id:013520 X80622 Rhodococcus rhodnii str. N 443 DSM 43337. prokMSA_id:013522 X80623 Rhodococcus rhodnii str. N 444 DSM 43959. prokMSA_id:013519 X81935 Rhodococcus rhodnii ATCC 35071 . 2.30.1.13.4.002 OTU 1 seq prokMSA_id:078149 AB089078 Actinobacteridae clone:Rs-K09 2.30.1.13.5 NOC.CORYNEBACTEROIDES_GROUP 9 seqs 2.30.1.13.5.001 OTU 7 seqs prokMSA_id:032826 AF356016 Actinobacterium NZ2 prokMSA_id:081710 AF430066 Nocardia corynebacterioides strain DSM 20151 complete prokMSA_id:068738 AF479363 Glacial ice SB12K-2-5 prokMSA_id:077378 AY167850 Nocardia corynebacterioides strain SAFR-015 prokMSA_id:013523 X80615 Nocardia corynebacteroides DSM 20151 . prokMSA_id:013524 Y07813 Rhodococcus corynebacteroides CIP 104291. prokMSA_id:013525 Y07849 Rhodococcus corynebacteroides CIP 104294. 2.30.1.13.5.002 OTU 1 seq prokMSA_id:073846 AF227864 Nocardia sp. 86349 2.30.1.13.5.999 poor quality 1 seq prokMSA_id:075616 AY157677 Nocardia corynebacterioides strain QBTo 2.30.1.13.6 RHODOCOCCUS_GROUP 726 seqs 2.30.1.13.6.1 RCO.OPACUS_SUBGROUP 261 seqs 2.30.1.13.6.1.007 OTU 185 seqs prokMSA_id:013539 AB010911 Rhodococcus sp. str. SRB1948-A07. prokMSA_id:013546 AB023374 Rhodococcus IFO16253 IFO 16253. prokMSA_id:037637 AB032565 Rhodococcus opacus prokMSA_id:033786 AB037099 Rhodococcus opacus strain:SNK102 prokMSA_id:031328 AB037100 Rhodococcus opacus strain:SNK103 prokMSA_id:033934 AB037101 Rhodococcus opacus strain:SNK104 prokMSA_id:036548 AB037102 Rhodococcus opacus strain:SNK106 prokMSA_id:025409 AB037103 Rhodococcus opacus strain:SNK110 prokMSA_id:020342 AB037104 Nocardioides simplex strain:SNK120 prokMSA_id:021162 AB037105 Nocardia calcarea strain:D3213 prokMSA_id:040695 AB037246 Rhodococcus opacus prokMSA_id:042265 AB044557 Rhodococcus sp. PN1 prokMSA_id:072226 AB046357 Rhodococcus sp. IFO16295 prokMSA_id:069972 AB046362 Rhodococcus erythropolis prokMSA_id:041754 AB060974 Rhodococcus opacus prokMSA_id:045758 AB064677 clone:NK198 prokMSA_id:041269 AB064678 clone:NK200 prokMSA_id:054772 AB064686 clone:NK208 prokMSA_id:034501 AB064692 clone:NK216 prokMSA_id:031189 AB064694 clone:NK218 prokMSA_id:046703 AB064697 clone:NK223 prokMSA_id:039669 AB064699 clone:NK225 prokMSA_id:028729 AB064700 clone:NK227 prokMSA_id:020035 AB064704 clone:NK232 prokMSA_id:025483 AB064708 clone:NK237 prokMSA_id:062436 AB067734 Rhodococcus tukisamuensis prokMSA_id:059470 AB071951 Rhodococcus baikonurus prokMSA_id:063076 AB079099 Rhodococcus opacus strain:YTK42 prokMSA_id:063075 AB079100 Rhodococcus opacus strain:YTK46 prokMSA_id:063074 AB079101 Rhodococcus opacus strain:YTK47 prokMSA_id:078857 AB094463 Rhodococcus sp. 2216.25.15 prokMSA_id:082864 AB108557 Rhodococcus sp. TMP2 prokMSA_id:084166 AB108558 Rhodococcus sp. T12 prokMSA_id:013534 AF001265 Rhodococcus erythropolis str. IGTS8 ATCC 53968. prokMSA_id:013537 AF046885 Rhodococcus Q15 str. Q15. prokMSA_id:013549 AF095715 Rhodococcus opacus str. M213. prokMSA_id:013545 AF124342 Rhodococcus koreensis str. DNP505. prokMSA_id:013563 AF124343 Rhodococcus koreensis str. DNP505. prokMSA_id:013554 AF130412 str. STS_R2A_30. prokMSA_id:033267 AF131626 Tsukamurella sp. IM-0683 prokMSA_id:013538 AF181691 Rhodococcus 7/1 str. 7/1. prokMSA_id:050828 AF230876 Rhodococcus erythropolis prokMSA_id:021207 AF235012 Rhodococcus sp. UFZ-B528 prokMSA_id:049466 AF260709 Nocardioides sp. S2 prokMSA_id:023071 AF328195 clone KS54 prokMSA_id:043639 AF416566 Rhodococcus maanshanensis prokMSA_id:064678 AF420412 Rhodococcus sp. ANT-AN007 prokMSA_id:064676 AF420414 Rhodococcus sp. IND-AN014 prokMSA_id:064677 AF420415 Rhodococcus sp. 870-AN019 prokMSA_id:064674 AF420416 Rhodococcus sp. ARG-AN024 prokMSA_id:064673 AF420417 Rhodococcus sp. ARG-AN025 prokMSA_id:064671 AF420419 Rhodococcus sp. ENG-AN033 prokMSA_id:073218 AF420421 Rhodococcus sp. 871-AN040 prokMSA_id:064669 AF420422 Rhodococcus sp. 871-AN053 prokMSA_id:070501 AF426151 Rhodococcus erythropolis WS3526 prokMSA_id:064397 AF426152 Rhodococcus erythropolis WS3527 prokMSA_id:064395 AF426153 Rhodococcus erythropolis WS3528 prokMSA_id:081495 AF430065 Nocardia globerula strain DSM 46019 complete prokMSA_id:070376 AF435009 Rhodococcus opacus HL PM-1 prokMSA_id:073025 AF442524 Bromate-reducing B8 prokMSA_id:068494 AF487704 Nocardia sp. H17-1 prokMSA_id:066787 AF500316 Rhodococcus sp. PC10 prokMSA_id:066779 AF500326 Rhodococcus sp. PG6 prokMSA_id:065523 AF501338 Rhodococcus erythropolis strain HAMBI2393 prokMSA_id:065520 AF501339 Rhodococcus erythropolis strain HAMBI2390 prokMSA_id:065518 AF501342 Rhodococcus erythropolis strain HAMBI2378 prokMSA_id:065516 AF501344 Rhodococcus erythropolis strain HAMBI2404 prokMSA_id:056468 AF501345 Rhodococcus erythreus strain HAMBI2403 prokMSA_id:074654 AF501353 Rhodococcus erythropolis strain HAMBI2399 prokMSA_id:056657 AF501355 Rhodococcus erythropolis strain HAMBI2392 prokMSA_id:065503 AF501364 Rhodococcus erythropolis strain HAMBI2382 prokMSA_id:066280 AF506066 Rhodococcus erythreus LCSA0TU10 prokMSA_id:064298 AF512836 Rhodococcus erythropolis specimen-voucher CNCM 2204 prokMSA_id:065228 AF512837 Rhodococcus erythropolis specimen-voucher CNCM 2205 prokMSA_id:065229 AF512838 Rhodococcus erythropolis specimen-voucher CNCM 2207 prokMSA_id:065227 AF512839 Rhodococcus erythropolis specimen-voucher CNCM 2208 prokMSA_id:073730 AF513396 Rhodococcus sp. Lact1 prokMSA_id:091239 AF532870 Rhodococcus erythropolis prokMSA_id:013544 AJ002749 Rhodococcus sp. str. GW-86a. prokMSA_id:072835 AJ009591 Rhodococcus erythropolis prokMSA_id:039711 AJ011328 Rhodococcus erythropolis isolate HN41 prokMSA_id:013555 AJ131637 Rhodococcus erythropolis str. DCL14. prokMSA_id:038125 AJ237967 Rhodococcus erythropolis isolate EK5 prokMSA_id:061953 AJ244660 Rhodococcus sp. V4.BO.16 prokMSA_id:061949 AJ244661 Rhodococcus sp. V4.MO.13 prokMSA_id:034073 AJ250924 Rhodococcus erythropolis strain TB2 prokMSA_id:021646 AJ250925 Rhodococcus erythropolis strain m15-3 prokMSA_id:035065 AJ250926 Rhodococcus erythropolis strain HA1 prokMSA_id:040386 AJ250927 Rhodococcus erythropolis strain Y2 prokMSA_id:030786 AJ250928 Rhodococcus erythropolis strain NCIMB13064 prokMSA_id:037773 AJ250929 Rhodococcus erythropolis strain GJ70 prokMSA_id:032093 AJ313018 Rhodococcus sp. MN 38 isolate MN 38 prokMSA_id:067484 AJ457058 Rhodococcus erythropolis strain HXN2000 prokMSA_id:059505 AJ490526 Rhodococcus erythropolis strain AJ270 prokMSA_id:059996 AJ505559 Rhodococcus sp. 4115 isolate 4115 prokMSA_id:093301 AJ551100 rhodococcus sp. wp20 isolate wp20 prokMSA_id:093735 AJ551145 Rhodococcus sp. An6 isolate An6 prokMSA_id:093177 AJ551166 Rhodococcus sp. An28 isolate An28 prokMSA_id:088661 AJ576250 Rhodococcus erythropolis isolate MR32W prokMSA_id:064484 AY017113 Arthrobacter oxamicetus prokMSA_id:064483 AY017114 Arthrobacter oxamicetus subsp. propiophenicolus prokMSA_id:073080 AY017115 Arthrobacter paraffineus prokMSA_id:064482 AY017116 Rhodococcus erythropolis DSM 20665 prokMSA_id:064480 AY017117 Brevibacterium healii prokMSA_id:064479 AY017118 Brevibacterium paraffinoliticum prokMSA_id:072854 AY017119 Corynebacterium alkanum prokMSA_id:064476 AY017121 Corynebacterium humiferum prokMSA_id:064474 AY017124 Rhodococcus erythropolis DSM 312 prokMSA_id:064472 AY017125 Arthrobacter hydrocarboglutamicus prokMSA_id:070278 AY017131 Rhodococcus erythropolis DSM 43060 prokMSA_id:064467 AY017132 Rhodococcus erythropolis DSM 313 prokMSA_id:072682 AY017133 Rhodococcus erythropolis IAM 1474 prokMSA_id:064465 AY017134 Corynebacterium sp. WS2071 prokMSA_id:071273 AY017136 Rhodococcus sp. NCIB 9646 prokMSA_id:073171 AY017137 Rhodococcus erythropolis DSM 311 prokMSA_id:064462 AY017138 Rhodococcus erythropolis IAM 1399 prokMSA_id:045944 AY024343 Rhodococcus sp. DTB prokMSA_id:075621 AY027583 Rhodococcus opacus strain CB 24-1 prokMSA_id:076475 AY027584 Rhodococcus opacus strain HL 24-1 prokMSA_id:075703 AY027585 Rhodococcus opacus strain DNP14-5 prokMSA_id:076659 AY027586 Rhodococcus opacus strain DNP14-9 prokMSA_id:072913 AY044095 Rhodococcus sp. 122-AN065 prokMSA_id:035273 AY044096 Rhodococcus sp. 67-BEN001 prokMSA_id:050108 AY077846 Rhodococcus sp. 1awq prokMSA_id:066626 AY094491 Rhodococcus sp. prokMSA_id:059274 AY147846 Rhodococcus erythropolis strain NVI 00/50/6670 prokMSA_id:075836 AY167968 Swine manure 37-6 prokMSA_id:078547 AY177354 Rhodococcus sp. I7 prokMSA_id:083380 AY249053 Rhodococcus sp. BDC14 prokMSA_id:088858 AY281107 Rhodococcus erythropolis strain ATCC 11048 prokMSA_id:090439 AY281109 Rhodococcus erythropolis prokMSA_id:089846 AY281110 Rhodococcus erythropolis strain ATCC 25544 prokMSA_id:090282 AY281111 Rhodococcus erythropolis strain ATCC 4277 prokMSA_id:089968 AY281113 Rhodococcus erythropolis prokMSA_id:090159 AY281114 Rhodococcus erythropolis prokMSA_id:088535 AY281115 Rhodococcus erythropolis strain D-1 prokMSA_id:089401 AY281116 Rhodococcus opacus strain MR11 prokMSA_id:088827 AY281117 Rhodococcus opacus strain MR22 prokMSA_id:089692 AY281118 Rhodococcus erythropolis strain N1-36 prokMSA_id:089564 AY281119 Rhodococcus erythropolis strain N1-43 prokMSA_id:088861 AY281120 Rhodococcus erythropolis strain Q1a-22 prokMSA_id:089689 AY281121 Rhodococcus erythropolis locus A prokMSA_id:090700 AY281122 Rhodococcus erythropolis locus B prokMSA_id:090627 AY281123 Rhodococcus erythropolis locus C prokMSA_id:089302 AY281124 Rhodococcus erythropolis locus D prokMSA_id:090443 AY281125 Rhodococcus erythropolis locus E prokMSA_id:089889 AY305274 Rhodococcus sp. J-5 prokMSA_id:091591 AY345526 W14 prokMSA_id:097500 AY395278 A-S-15 prokMSA_id:044751 D87088 Rhodococcus erythropolis prokMSA_id:035080 D87089 Rhodococcus erythropolis prokMSA_id:013565 NONE Rhodococcus sp. str. RHA3. prokMSA_id:013528 U16312 Rhodococcus sp. str. RHA1. prokMSA_id:013567 U16313 Rhodococcus sp. str. RHA2. prokMSA_id:013532 U16314 Rhodococcus sp. str. RHA3. prokMSA_id:013542 U16315 Rhodococcus sp. str. RHA7. prokMSA_id:013575 U16316 Rhodococcus sp. str. RHA6. prokMSA_id:013527 U16317 Rhodococcus sp. str. RHA4. prokMSA_id:013526 U27579 Rhodococcus sp. prokMSA_id:013569 U31493 str. S13A. prokMSA_id:013535 U81990 Nocardioides simplex ATCC 13260. prokMSA_id:013556 U82666 Nocardioides simplex ATCC 19565. prokMSA_id:013557 U82667 Nocardioides simplex ATCC 19566. prokMSA_id:013552 U87968 Rhodococcus X309 str. X309. prokMSA_id:013553 U87969 Rhodococcus B1 str. B1. prokMSA_id:013576 U89713 Rhodococcus globerulus str. PWD1 NCIMB 12315 . prokMSA_id:013536 X76690 Rhodococcus sp. str. PH114. prokMSA_id:013561 X77779 Rhodococcus globerulus str. PWD1 NCIMB 12315 . prokMSA_id:072488 X77779 R.globerulus NCIMB 12315 prokMSA_id:013551 X79289 Rhodococcus erythropolis DSM 43066 . prokMSA_id:013562 X80616 Rhodococcus sp. prokMSA_id:013574 X80617 Rhodococcus marinonascens. prokMSA_id:013533 X80618 Rhodococcus erythropolis DSM 43188 . prokMSA_id:013531 X80619 Rhodococcus globerulus DSM 43954 . prokMSA_id:013573 X80630 Rhodococcus opacus DSM 43205 . prokMSA_id:013560 X80631 Rhodococcus opacus DSM 43206 . prokMSA_id:013530 X81929 Rhodococcus erythropolis ATCC 4277 . prokMSA_id:013559 X81931 Rhodococcus globerulus str. PWD1 NCIMB 12315 . prokMSA_id:013571 X81933 Rhodococcus marinonascens ATCC 35653 . prokMSA_id:020687 X85239 Rhodococcus sp. strain J32 prokMSA_id:013540 X89240 Rhodococcus sp. str. DN-22. prokMSA_id:013572 X89710 Rhodococcus opacus. prokMSA_id:013548 Y11892 Rhodococcus opacus str. GM-29. prokMSA_id:013547 Y11893 Rhodococcus opacus str. 1CP. prokMSA_id:013543 Z37138 Tsukamurella wratislaviensis. 2.30.1.13.6.1.008 OTU 1 seq prokMSA_id:013541 U20791 Rhodococcus sp. 2.30.1.13.6.1.009 OTU 2 seqs prokMSA_id:029752 X85241 Rhodococcus sp. strain J71 prokMSA_id:047805 X85242 Rhodococcus sp. strain J72 2.30.1.13.6.1.010 OTU 1 seq prokMSA_id:037109 AF468521 Rhodococcus sp. DK17 2.30.1.13.6.1.011 OTU 4 seqs prokMSA_id:068351 AF481211 Dietzia sp. E9_2 E1 oral isolate prokMSA_id:065438 AF513084 clone 10 prokMSA_id:065421 AF513099 clone 61 prokMSA_id:044836 Y08313 Dietzia sp. strain CIP104293 2.30.1.13.6.1.012 OTU 1 seq prokMSA_id:082515 AH012635 Rhodococcus sp. ADH and genes 2.30.1.13.6.1.013 OTU 1 seq prokMSA_id:089000 AY281112 Rhodococcus erythropolis 2.30.1.13.6.1.014 OTU 1 seq prokMSA_id:089033 AY281108 Rhodococcus erythropolis strain ATCC 19369 2.30.1.13.6.1.999 poor quality 65 seqs prokMSA_id:031183 AB032365 Rhodococcus sp. KSM-B-3 prokMSA_id:098098 AB122830 Rhodococcus sp. 384F01 prokMSA_id:097640 AB123124 Rhodococcus sp. 415D05 prokMSA_id:024698 AF104294 176 prokMSA_id:034071 AF104299 191 prokMSA_id:020077 AF240136 Grassland soil TSA-10 prokMSA_id:072622 AF240142 Grassland soil TSA-17 prokMSA_id:017751 AF250398 Rhodococcus sp. D15 prokMSA_id:043443 AF250413 Rhodococcus sp. D40 prokMSA_id:036673 AF250417 Rhodococcus sp. C27 prokMSA_id:023634 AF353689 Tsukamurella sp. PR-N15 prokMSA_id:068088 AF365654 clone BM89DS6BbA4 prokMSA_id:073660 AF426150 Rhodococcus erythropolis DSM43066T prokMSA_id:043150 AF441327 PAH-contaminated sludge PB-32 prokMSA_id:045706 AF469396 clone 33-PA76B00 prokMSA_id:058132 AF498685 Ellin303 prokMSA_id:070772 AF498686 Ellin304 prokMSA_id:065504 AF501363 Rhodococcus erythropolis strain HAMBI2385 prokMSA_id:057748 AF543313 Nocardia globerula prokMSA_id:057942 AF544314 actinobacterium isolate M36 prokMSA_id:057930 AF544331 actinobacterium isolate M15 prokMSA_id:079062 AF547040 358 prokMSA_id:022722 AJ292459 ZI-6 clone ZI-6 prokMSA_id:048839 AJ298930 Rhodococcus globerulus strain d37 prokMSA_id:029739 AJ298931 Rhodococcus opacus strain d40 prokMSA_id:025209 AJ302331 Rhodococcus sp. EJP75 isolate EJP75 prokMSA_id:042827 AJ309915 Rhodococcus globerulus strain dtb74 prokMSA_id:025890 AJ404527 Rhodococcus RC1 prokMSA_id:079893 AJ437131 clone lf3-01 prokMSA_id:056467 AJ489362 Rhodococcus sp. Lgg15.6 strain Lgg15.6 prokMSA_id:056966 AJ518610 clone Qui4P2-85 prokMSA_id:091279 AJ578492 Rhodococcus sp. TD23 prokMSA_id:091104 AJ578493 Rhodococcus sp. SY38 prokMSA_id:092566 AJ580651 clone NN325-13 prokMSA_id:071719 AY017120 Corynebacterium aurantiacum prokMSA_id:072507 AY017122 Rhodococcus sp. ATCC 15961 prokMSA_id:072322 AY017123 Rhodococcus sp. ATCC 15108 prokMSA_id:071424 AY017126 Rhodococcus erythropolis WS1510 prokMSA_id:073283 AY017128 Rhodococcus sp. ATCC 21035 prokMSA_id:069932 AY017129 Brevibacterium ketoglutamicum prokMSA_id:074225 AY017130 Rhodococcus erythropolis ATCC 19369 prokMSA_id:072346 AY017135 Corynebacterium sp. WS2072 prokMSA_id:047084 AY039506 Soil S89M1 prokMSA_id:061627 AY043563 Rhodococcus sp. 1S2.E8 prokMSA_id:055441 AY043586 Forest soil 4S2.D9 prokMSA_id:061607 AY043587 Forest soil 2S2.G4 prokMSA_id:066064 AY099256 clone MTU-32 prokMSA_id:083744 AY220355 Rhodococcus sp. ADH prokMSA_id:082479 AY220356 Rhodococcus sp. ADH prokMSA_id:086539 AY251217 Rhodococcus sp. prokMSA_id:083593 AY275517 Rhodococcus sp. MSB3003 prokMSA_id:089340 AY293883 Rhodococcus erythropolis prokMSA_id:093674 AY357220 Rhodococcus erythropolis ITCBP prokMSA_id:098355 AY394636 Rhodococcus sp. clone W2-17 prokMSA_id:013558 D84420 Rhodococcus sp. str. PR4. prokMSA_id:044022 U68710 Rhodococcus sp. MB1 prokMSA_id:035214 U68712 Rhodococcus sp. 6S48 prokMSA_id:013529 X53203 Rhodococcus erythropolis DSM 43188 . prokMSA_id:013566 X76691 Rhodococcus erythropolis. prokMSA_id:013568 X77780 Rhodococcus sp. str. P6. prokMSA_id:069889 X77780 Rhodococcus sp. P6 prokMSA_id:021119 X85240 Rhodococcus sp. strain J27 prokMSA_id:013564 X86631 Rhodococcus sp. str. AG-10. prokMSA_id:013570 X92114 Rhodococcus percolatus str. BMS1; LMAU.R292 HAMBI 1752 . prokMSA_id:013550 Z37137 Tsukamurella wratislaviensis str. M. Goodfellow N802. 2.30.1.13.6.2 RCO.FASCIANS_SUBGROUP 76 seqs 2.30.1.13.6.2.001 OTU 26 seqs prokMSA_id:013584 AB010907 Rhodococcus sp. str. SGB1168-116. prokMSA_id:013585 AB010908 Rhodococcus sp. str. SGB1168-118. prokMSA_id:013586 AB010913 Rhodococcus sp. str. SRB1948-Z40. prokMSA_id:065243 AB070458 Rhodococcus sp. YK2 prokMSA_id:079369 AB088667 Rhodococcus sp. MBIC01430 prokMSA_id:013582 AF181689 Rhodococcus 5/1 str. 5/1. prokMSA_id:013583 AF181690 Rhodococcus 5/14 str. 5/14. prokMSA_id:035057 AF205371 Rhodococcus fascians prokMSA_id:042627 AF235011 Rhodococcus sp. UFZ-B520 prokMSA_id:018740 AF260713 Rhodococcus sp. S9 prokMSA_id:059542 AF538745 CAGY6 strain CAGY6 prokMSA_id:037131 AJ011329 Rhodococcus fascians isolate KM6 prokMSA_id:061955 AJ244659 Rhodococcus sp. V4.ME.27 prokMSA_id:070233 AJ278779 strain R7212 prokMSA_id:070020 AJ293818 Antarctic seawater R7241 prokMSA_id:073382 AJ293819 Arctic seawater R7851 prokMSA_id:070795 AJ295711 Polar sea R7704 prokMSA_id:089578 AJ576249 Rhodococcus luteus isolate 7Y prokMSA_id:080394 AY188941 Rhodococcus sp. P_wp0233 prokMSA_id:080384 AY189683 Rhodococcus sp. P_wp0223 prokMSA_id:091661 AY336559 Rhodococcus sp. pfB30 prokMSA_id:096788 AY395020 Rhodococcus sp. NAB16 prokMSA_id:013580 X79186 Rhodococcus fascians. prokMSA_id:013577 X79187 Rhodococcus fascians. prokMSA_id:013587 X81930 Rhodococcus fascians ATCC 12974 . prokMSA_id:013581 Y11196 Rhodococcus fascians str. D188. 2.30.1.13.6.2.999 poor quality 50 seqs prokMSA_id:065222 AB070471 Rhodococcus sp. YK9 prokMSA_id:070955 AF288731 Rhodococcus sp. Fp2 prokMSA_id:057947 AF544309 actinobacterium isolate M47 prokMSA_id:056112 AF544310 actinobacterium isolate M45 prokMSA_id:057946 AF544311 actinobacterium isolate M43 prokMSA_id:057945 AF544312 actinobacterium isolate M40 prokMSA_id:057943 AF544315 actinobacterium isolate M30 prokMSA_id:057939 AF544318 actinobacterium isolate M24 prokMSA_id:057937 AF544319 actinobacterium isolate M22 prokMSA_id:056225 AF544322 actinobacterium isolate M14 prokMSA_id:057936 AF544323 actinobacterium isolate M37 prokMSA_id:057935 AF544325 actinobacterium isolate M33 prokMSA_id:057933 AF544327 actinobacterium isolate M27 prokMSA_id:056492 AF544328 actinobacterium isolate M25 prokMSA_id:057927 AF544333 actinobacterium isolate M09 prokMSA_id:057926 AF544335 actinobacterium isolate M06 prokMSA_id:057923 AF544338 actinobacterium isolate M41 prokMSA_id:057921 AF544339 actinobacterium isolate M44 prokMSA_id:057920 AF544341 actinobacterium isolate D02 prokMSA_id:057916 AF544344 actinobacterium isolate D11 prokMSA_id:057917 AF544345 actinobacterium isolate D13 prokMSA_id:057915 AF544346 actinobacterium isolate D16 prokMSA_id:055511 AF544347 actinobacterium isolate D17 prokMSA_id:057914 AF544348 actinobacterium isolate D22 prokMSA_id:057913 AF544350 actinobacterium isolate D26 prokMSA_id:056094 AF544352 actinobacterium isolate D32 prokMSA_id:057910 AF544354 actinobacterium isolate D36 prokMSA_id:057909 AF544355 actinobacterium isolate D41 prokMSA_id:057906 AF544358 actinobacterium isolate D44 prokMSA_id:057905 AF544359 actinobacterium isolate D45 prokMSA_id:057904 AF544361 actinobacterium isolate D48 prokMSA_id:057902 AF544362 actinobacterium isolate D50 prokMSA_id:057903 AF544364 actinobacterium isolate D54 prokMSA_id:057901 AF544365 actinobacterium isolate D55 prokMSA_id:057900 AF544366 actinobacterium isolate D57 prokMSA_id:057898 AF544369 actinobacterium isolate D62 prokMSA_id:076091 AJ517832 Rhodococcus sp. KU18 strain KU18 prokMSA_id:057010 AJ518563 clone Qui4P1-93 prokMSA_id:056970 AJ518599 clone Qui4P2-65 prokMSA_id:088040 AJ561177 Rhodococcus sp. GA-05 isolate GA-05 prokMSA_id:094231 AY358008 Rhodococcus sp. iRIV4 prokMSA_id:093587 AY358009 Rhodococcus sp. iRIV6 prokMSA_id:093618 AY358010 Rhodococcus sp. iRIV10 prokMSA_id:093953 AY358016 Rhodococcus sp. iRV8 prokMSA_id:093733 AY358017 Rhodococcus sp. iRV10 prokMSA_id:093467 AY358018 Rhodococcus sp. iRV15 prokMSA_id:093169 AY364018 Rhodococcus sp. iEI10 prokMSA_id:094002 AY364028 Rhodococcus sp. iEIII14 prokMSA_id:013579 X53204 Rhodococcus fascians str. CF19 DSM 20131. prokMSA_id:013578 X81932 Rhodococcus fascians ATCC 35014. 2.30.1.13.6.3 RCO.EQUI_SUBGROUP 41 seqs 2.30.1.13.6.3.001 OTU 16 seqs prokMSA_id:073279 AF273613 Rhodococcus equi isolate DY1 prokMSA_id:064672 AF420418 Rhodococcus sp. 871-AN029 prokMSA_id:055331 AF420420 Rhodococcus sp. 871-AN030 prokMSA_id:083293 AF490539 Rhodococcus equi strain DSM 20307T complete prokMSA_id:074538 AJ272467 Rhodococcus equi strain CUB 1063 NCTC 4219 prokMSA_id:046329 AJ272468 Rhodococcus equi strain CUB 1116 prokMSA_id:049374 AJ272469 Rhodococcus equi strain CUB1156 prokMSA_id:054298 AJ272470 Rhodococcus equi strain CUB1152 prokMSA_id:027935 AJ272471 Rhodococcus equi strain CUB 1232 prokMSA_id:017579 AJ272472 Rhodococcus equi strain CUB 1239 prokMSA_id:025876 AJ272473 Rhodococcus equi strain CUB 1242 prokMSA_id:013591 X80594 Rhodococcus equi ATCC 33707. prokMSA_id:013592 X80603 Rhodococcus equi ATCC 6939 . prokMSA_id:013594 X80613 Rhodococcus equi str. 545 DSM 43199 . prokMSA_id:013593 X80614 Rhodococcus equi DSM 20307 . prokMSA_id:013588 X82052 Corynebacterium hoagii ATCC 7005 . 2.30.1.13.6.3.999 poor quality 25 seqs prokMSA_id:096045 AB123111 Corynebacterium sp. 415C02 prokMSA_id:032630 AF141487 Planctomycetaceae clone CRE-FL74 prokMSA_id:047643 AF149885 010.96.107 prokMSA_id:069567 AF149886 010.96.123 prokMSA_id:020249 AF273614 Rhodococcus equi isolate DY2 prokMSA_id:034755 AF273615 Rhodococcus equi isolate DY4 prokMSA_id:031556 AF273619 Rhodococcus equi isolate DY8 prokMSA_id:040304 AF273620 Rhodococcus equi isolate DY9 prokMSA_id:047812 AF298835 Corynebacterium hoagii prokMSA_id:035578 AF400099 Da3-45 prokMSA_id:035105 AY039456 Earthworm burrow B39M1 prokMSA_id:020022 AY039491 Soil S55M2 prokMSA_id:060875 AY135891 clone SG1-151 prokMSA_id:076421 AY150958 actinobacterium clone uvi14 prokMSA_id:079183 AY186848 actinobacterium clone uvi14 prokMSA_id:096474 AY262300 Rhodococcus equi clone D2 prokMSA_id:096291 AY262301 Rhodococcus equi clone D1 prokMSA_id:013590 D37876 Rhodococcus equi ATCC 33701. prokMSA_id:070533 D37876 Rhodococcus equi prokMSA_id:013589 M29574 Rhodococcus equi str. equine lung isolate U of Illinois Vet Med prokMSA_id:013596 X78664 clone SMKN41. prokMSA_id:013595 X78665 clone SMKN6. prokMSA_id:013597 X89281 clone 21a. prokMSA_id:013598 X89291 clone 41a. prokMSA_id:013599 X89297 clone 53a. 2.30.1.13.6.4 NOC.ASTEROIDES_SUBGROUP 348 seqs 2.30.1.13.6.4.017 OTU 35 seqs prokMSA_id:031723 AF277199 Nocardia soli prokMSA_id:026611 AF277202 Nocardia cummidelens strain R89 prokMSA_id:022063 AF277203 Nocardia sp. S24 prokMSA_id:036433 AF277204 Nocardia fluminea prokMSA_id:047333 AF277205 Nocardia sp. W32 prokMSA_id:045886 AF277206 Nocardia sp. W138 prokMSA_id:022010 AF277207 Nocardia sp. W148 prokMSA_id:049884 AF277208 Nocardia sp. R112 prokMSA_id:052632 AF277209 Nocardia sp. W433 prokMSA_id:025032 AF277210 Nocardia sp. R7 prokMSA_id:035733 AF277211 Nocardia sp. R25 prokMSA_id:045989 AF277212 Nocardia sp. R18 prokMSA_id:048203 AF277213 Nocardia sp. R11 prokMSA_id:031681 AF277214 Nocardia sp. R32 prokMSA_id:033810 AF277215 Nocardia sp. R31 prokMSA_id:029293 AF277216 Nocardia sp. R26 prokMSA_id:044760 AF277217 Nocardia sp. R47 prokMSA_id:037262 AF277218 Nocardia sp. R86 prokMSA_id:036510 AF277219 Nocardia sp. W504 prokMSA_id:043173 AF277220 Nocardia sp. W410 prokMSA_id:039158 AF277221 Nocardia sp. R66 prokMSA_id:047624 AF277222 Nocardia sp. R133 prokMSA_id:048639 AF277224 Nocardia sp. R147 prokMSA_id:024815 AF277225 Nocardia sp. R95 prokMSA_id:043502 AF277226 Nocardia sp. R98 prokMSA_id:033953 AF277227 Nocardia sp. R441 prokMSA_id:082203 AF430050 Nocardia salmonicida strain DSM 40472 complete prokMSA_id:082373 AF430051 Nocardia soli strain DSM 44488 complete prokMSA_id:081721 AF430052 Nocardia cummidelens strain DSM 44490 complete prokMSA_id:081778 AF430053 Nocardia fluminea strain DSM 44489 complete prokMSA_id:081098 AF430063 Nocardia sp. DSM 6249 complete prokMSA_id:054743 AJ303008 Nocardia ignorata strain DSM 44496 prokMSA_id:090175 AY191254 Nocardia ignorata strain DSM 44496T prokMSA_id:085369 AY217499 Actinobacterium WCIP2 prokMSA_id:013630 Z46750 Nocardia salmonicida JCM 4826 . 2.30.1.13.6.4.024 OTU 4 seqs prokMSA_id:081719 AF430049 Nocardia crassostreae strain JCM 10500 complete prokMSA_id:013615 U92799 Nocardia crassostrae str. RB1. prokMSA_id:013616 U92800 Nocardia crassostrae str. OB3. prokMSA_id:013614 Z37989 Nocardia crassostreae str. NB4H C.S. Friedman ATCC 700418 . 2.30.1.13.6.4.027 OTU 1 seq prokMSA_id:020154 AJ277837 ARFS-10 2.30.1.13.6.4.029 OTU 4 seqs prokMSA_id:043187 Z82234 N.otitidis-caviarum N1053 prokMSA_id:038252 Z82237 N.otitidis-caviarum N133 prokMSA_id:025221 Z82238 N.otitidis-caviarum N230 prokMSA_id:029166 Z82239 N.otitidis-caviarum N299 2.30.1.13.6.4.034 OTU 1 seq prokMSA_id:039505 AF314425 PHOS-HE93 2.30.1.13.6.4.035 OTU 1 seq prokMSA_id:040439 AF277223 Nocardia soli 2.30.1.13.6.4.036 OTU 1 seq prokMSA_id:072409 AF545656 candidate division BD clone stbd7 2.30.1.13.6.4.037 OTU 1 seq prokMSA_id:046104 AF131447 Nocardia sp. IM-5391 2.30.1.13.6.4.040 OTU 1 seq prokMSA_id:074674 AF219974 Nocardia sp. 7031 2.30.1.13.6.4.041 OTU 1 seq prokMSA_id:082059 AF430064 Nocardia sp. DSM 46067 complete 2.30.1.13.6.4.043 OTU 194 seqs prokMSA_id:013622 AB024312 Nocardia MK703-102F1 str. MK703-102F1. prokMSA_id:020876 AB035565 Nocardia sp. MU99401 prokMSA_id:092485 AB080196 Nocardia pseudobrasiliensis prokMSA_id:092592 AB084444 Nocardia transvalensis strain:IFM 0396 prokMSA_id:092117 AB084445 Nocardia transvalensis strain:IFM 0505 prokMSA_id:093071 AB084446 Nocardia transvalensis strain:IFM 0513 prokMSA_id:092434 AB084447 Nocardia transvalensis strain:IFM 0998 prokMSA_id:092185 AB084448 Nocardia transvalensis strain:IFM 10065 prokMSA_id:064359 AB086861 Nocardia pseudobrasiliensis strain:IFM 10098 prokMSA_id:058653 AB092437 Nocardia sp. YU011-1 prokMSA_id:058654 AB092438 Nocardia sp. YU019-2 prokMSA_id:084442 AB092560 Nocardia sp. IFM 0092 prokMSA_id:084206 AB092561 Nocardia sp. IFM 0265 prokMSA_id:083505 AB092562 Nocardia sp. IFM 0260 prokMSA_id:082698 AB092563 Nocardia sp. IFM 0330 prokMSA_id:082942 AB092564 Nocardia sp. IFM 0636 prokMSA_id:084353 AB092565 Nocardia sp. IFM 0833 prokMSA_id:076153 AB092566 Nocardia sp. IFM 0245 prokMSA_id:076978 AB092567 Nocardia sp. IFM 0263 prokMSA_id:075424 AB092568 Nocardia sp. IFM 0425 prokMSA_id:077166 AB092569 Nocardia sp. IFM 0731 prokMSA_id:075323 AB092570 Nocardia sp. IFM 0860 prokMSA_id:084484 AB097453 Nocardia sp. IFM 0299 prokMSA_id:084268 AB097454 Nocardia sp. IFM 0430 prokMSA_id:084390 AB097455 Nocardia sp. IFM 0583 prokMSA_id:089625 AB097456 Nocardia sp. IFM 0762 prokMSA_id:089954 AB097457 Nocardia sp. IFM 0909 prokMSA_id:090695 AB097458 Nocardia sp. IFM 10205 prokMSA_id:091745 AB108775 Nocardia sp. YZ-96 prokMSA_id:091450 AB108776 Nocardia sp. YZ-107 prokMSA_id:091578 AB108777 Nocardia sp. YZ-166 prokMSA_id:091839 AB108778 Nocardia sp. IFM 10084 prokMSA_id:087801 AB110907 Nocardia otitidiscaviarum prokMSA_id:088995 AB115182 Nocardia abscessus strain:KNJ59 prokMSA_id:013633 AF060790 Nocardia Y9 str. Y9. prokMSA_id:027365 AF131437 Nocardia sp. IM-0213 prokMSA_id:053146 AF131438 Nocardia sp. IM-0352 prokMSA_id:027274 AF131439 Nocardia sp. IM-0482 prokMSA_id:016720 AF131440 Nocardia sp. IM-1627 prokMSA_id:039311 AF131441 Nocardia sp. IM-2608 prokMSA_id:017075 AF131442 Nocardia sp. IM-3553 prokMSA_id:044705 AF131443 Nocardia sp. IM-4165 prokMSA_id:073709 AF131444 Nocardia sp. IM-4166 prokMSA_id:050314 AF131445 Nocardia sp. IM-4849 prokMSA_id:040424 AF131446 Nocardia sp. IM-5233 prokMSA_id:044480 AF131448 Nocardia sp. IM-6653 prokMSA_id:013609 AF154129 Nocardia amycolata str. AS4.1521T. prokMSA_id:073425 AF162772 Nocardia asteroides prokMSA_id:071423 AF162773 Nocardia nova prokMSA_id:070464 AF163818 Nocardia asteroides prokMSA_id:025440 AF179865 Nocardia paucivorans complete prokMSA_id:041041 AF218292 Nocardia abscessus strain IMMIB D-1592T prokMSA_id:019715 AF218293 Nocardia abscessus strain IMMIB D-1599 prokMSA_id:028259 AF218294 Nocardia abscessus strain IMMIB V-12 prokMSA_id:040613 AF251566 Nocardia seriolae prokMSA_id:043711 AF254417 Nocardia seriolae strain NA109 complete prokMSA_id:047578 AF254418 Nocardia seriolae strain NA111 complete prokMSA_id:039702 AF254419 Nocardia seriolae strain NA115 complete prokMSA_id:019445 AF254420 Nocardia seriolae strain NA118 complete prokMSA_id:017289 AF254421 Nocardia seriolae strain NA117 complete prokMSA_id:020332 AF277198 Nocardia africana prokMSA_id:024358 AF278572 Nocardia veterana prokMSA_id:035195 AF282889 Nocardia cyriacigeorgici complete prokMSA_id:038297 AF302230 Nocardia africana SD925 prokMSA_id:043786 AF302231 Nocardia africana SD910 prokMSA_id:040966 AF302232 Nocardia africana SD880 prokMSA_id:019866 AF331799 Nocardia sp. 4.1177 prokMSA_id:066022 AF380936 Nocardia seriolae strain NA2 prokMSA_id:056684 AF380937 Nocardia seriolae complete prokMSA_id:066021 AF380938 Nocardia seriolae strain NA114K prokMSA_id:062867 AF397063 Nocardia sp. AB111111 prokMSA_id:063689 AF421563 Nocardia sp. 98-37-068A prokMSA_id:063690 AF421564 Nocardia sp. 99-08-244A prokMSA_id:063688 AF421565 Nocardia sp. 97-21-103A prokMSA_id:081452 AF430018 Nocardia abscessus strain JCM 6043 complete prokMSA_id:082196 AF430019 Nocardia asteroides strain DSM 43757 complete prokMSA_id:081647 AF430020 Nocardia cyriacigeorgica strain DSM 43005 complete prokMSA_id:081540 AF430021 Nocardia sp. DSM 43253 complete prokMSA_id:081678 AF430022 Nocardia sp. DSM 43576 complete prokMSA_id:081064 AF430023 Nocardia sp. DSM 43254 complete prokMSA_id:081999 AF430024 Nocardia sp. DSM 43260 complete prokMSA_id:081174 AF430025 Nocardia asteroides strain DSM 43258 complete prokMSA_id:082420 AF430026 Nocardia asteroides strain DSM 43255 complete prokMSA_id:081150 AF430027 Nocardia cyriacigeorgica strain DSM 44484 complete prokMSA_id:081101 AF430028 Nocardia nova strain JCM 6044 complete prokMSA_id:082005 AF430029 Nocardia nova strain S556 complete prokMSA_id:081390 AF430030 Nocardia nova strain S559 complete prokMSA_id:082030 AF430031 Nocardia nova strain DSM 43256 complete prokMSA_id:081217 AF430033 Nocardia farcinica strain DSM 43665 complete prokMSA_id:082387 AF430034 Nocardia farcinica strain S560 complete prokMSA_id:081484 AF430035 Nocardia carnea strain DSM 43397 complete prokMSA_id:081651 AF430036 Nocardia carnea strain S547 complete prokMSA_id:081766 AF430037 Nocardia carnea strain DSM 46071 complete prokMSA_id:081612 AF430038 Nocardia brasiliensis strain DSM 43758 complete prokMSA_id:082195 AF430039 Nocardia seriolae strain DSM 44129 complete prokMSA_id:081432 AF430040 Nocardia brevicatena strain DSM 43024 complete prokMSA_id:082341 AF430041 Nocardia paucivorans strain DSM 44386 complete prokMSA_id:081200 AF430042 Nocardia pseudobrasiliensis strain DSM 44290 complete prokMSA_id:082307 AF430043 Nocardia pseudobrasiliensis strain JCM 9883 complete prokMSA_id:081184 AF430044 Nocardia uniformis strain DSM 43136 complete prokMSA_id:081458 AF430045 Nocardia vaccinii strain DSM 43285 complete prokMSA_id:082429 AF430046 Nocardia pseudovaccinii strain DSM 43406 complete prokMSA_id:082063 AF430047 Nocardia transvalensis strain DSM 43405 complete prokMSA_id:081205 AF430048 Nocardia flavorosea strain JCM 3342 complete prokMSA_id:082272 AF430054 Nocardia africana strain DSM 44491 complete prokMSA_id:082356 AF430055 Nocardia veterana strain DSM 44445 complete prokMSA_id:081660 AF430056 Nocardia sp. DSM 43301 complete prokMSA_id:081707 AF430057 Nocardia sp. DSM 43395 complete prokMSA_id:082175 AF430058 Nocardia sp. DSM 43399 complete prokMSA_id:081459 AF430059 Nocardia veterana strain DSM 40777 complete prokMSA_id:082068 AF430060 Nocardia sp. DSM 40872 complete prokMSA_id:082279 AF430061 Nocardia sp. DSM 46070 complete prokMSA_id:081737 AF430062 Nocardia sp. DSM 43396 complete prokMSA_id:082443 AF430067 Nocardia otitidiscaviarum strain DSM 43242 complete prokMSA_id:081683 AF430068 Nocardia otitidiscaviarum strain S639 complete prokMSA_id:047640 AF459443 Nocardia caishijiensis prokMSA_id:084635 AF490540 Nocardia veterana strain DSM 43557 complete prokMSA_id:013611 AJ131211 Nocardia farcinica. prokMSA_id:059479 AJ508414 Nocardia cyriacigeorgica strain 0202 93908 prokMSA_id:086269 AJ508748 Nocardia puris strain IMMIB R-145T prokMSA_id:084646 AJ556157 Nocardia tenerifenis prokMSA_id:019134 AY017474 Nocardia seriolae prokMSA_id:036906 AY036053 Nocardia novocastrensa strain N1251 prokMSA_id:071341 AY036054 Nocardia devorans strain N1086 prokMSA_id:083004 AY089701 Nocardia africana strain DSM 44491 prokMSA_id:055920 AY149599 Nocardia veterana isolate B430 prokMSA_id:079112 AY155203 Nocardia sp. ATCC 49872 complete prokMSA_id:085655 AY171039 Nocardia veterana prokMSA_id:088885 AY191250 Nocardia nova strain ATCC 33726T prokMSA_id:089842 AY191251 Nocardia asteroides strain ATCC 49872 prokMSA_id:089609 AY191252 Nocardia vaccinii strain ATCC 11092T prokMSA_id:089234 AY191253 Nocardia veterana strain DSM 44445T prokMSA_id:084366 AY222321 Nocardia alba prokMSA_id:083908 AY244782 Nocardia cyriacigeorgica prokMSA_id:083250 AY245543 Nocardia brasiliensis prokMSA_id:090115 AY282603 Nocardia neocaledonica prokMSA_id:088685 AY333115 Nocardia xishanensis prokMSA_id:013629 X57949 Nocardia asteroides. prokMSA_id:013642 X80591 Nocardia brasiliensis str. M. Goodfellow N318 ATCC 19296 . prokMSA_id:013612 X80592 Nocardia seriolae ATCC 43993 . prokMSA_id:013605 X80593 Nocardia nova ATCC 33726 . prokMSA_id:013620 X80595 Nocardia farcinica str. M. Goodfellow N898 ATCC 3318 . prokMSA_id:013628 X80597 Nocardia vaccinii ATCC 11092 . prokMSA_id:013602 X80598 Nocardia transvalensis ATCC 6865 . prokMSA_id:013636 X80599 Nocardia otitidiscaviarum ATCC 14629 . prokMSA_id:013641 X80600 Nocardia brevicatena ATCC 15333 . prokMSA_id:013606 X80602 Nocardia carnea ATCC 6847 . prokMSA_id:013613 X80604 Nocardia farcinica CIP 3029.92. prokMSA_id:013626 X80605 Nocardia farcinica CIP 3030.92. prokMSA_id:013624 X80606 Nocardia asteroides DSM 43757 . prokMSA_id:013644 X80607 Nocardia carnea. prokMSA_id:013631 X80608 Nocardia brasiliensis. prokMSA_id:013639 X80609 Nocardia transvalensis str. N1202 DSM 43405 . prokMSA_id:013604 X80610 Nocardia farcinica. prokMSA_id:013608 X80611 Nocardia otitidiscaviarum. prokMSA_id:013617 X84850 Nocardia asteroides str. M. Goodfellow N317 ATCC 19247 . prokMSA_id:013627 X84851 Nocardia asteroides ATCC 23824. prokMSA_id:013647 X84852 Nocardia pseudobrasiliensis CIP 92604. prokMSA_id:013648 X84853 Nocardia pseudobrasiliensis CDC N1049. prokMSA_id:013649 X84854 Nocardia pseudobrasiliensis CDC N249. prokMSA_id:013650 X84855 Nocardia pseudobrasiliensis CDC N649. prokMSA_id:013646 X84856 Nocardia pseudobrasiliensis ATCC 51511. prokMSA_id:013645 X84857 Nocardia pseudobrasiliensis ATCC 51512 . prokMSA_id:013610 X91041 Nocardia farcinica str. GD1. prokMSA_id:013643 Z36925 Nocardia seriolae str. N1116 JCM 3360 . prokMSA_id:013638 Z36926 Nocardia transvalensis str. N1202 DSM 43405 . prokMSA_id:013632 Z36927 Nocardia vaccinii str. N1199 DSM 43285 . prokMSA_id:013603 Z36928 Nocardia brevicatena str. N1201 DSM 43024 . prokMSA_id:013600 Z36929 Nocardia carnea str. N1200 DSM 43397 . prokMSA_id:013621 Z36930 Nocardia nova str. N1112 JCM 6044 . prokMSA_id:013635 Z36934 Nocardia asteroides str. M. Goodfellow N317 ATCC 19247 . prokMSA_id:013640 Z36935 Nocardia brasiliensis str. M. Goodfellow N318 ATCC 19296 . prokMSA_id:013619 Z36936 Nocardia farcinica str. M. Goodfellow N898 ATCC 3318 . prokMSA_id:013623 Z37136 Nocardia pseudosporangifera JCM 3288. prokMSA_id:013637 Z46752 Nocardia uniformis JCM 3224. prokMSA_id:013601 Z46754 Nocardia flavorozea JCM 3332. prokMSA_id:026947 Z82218 N.asteroides ATCC 14759 prokMSA_id:027789 Z82219 N.asteroides N1064 prokMSA_id:035040 Z82220 N.asteroides N168 prokMSA_id:048486 Z82221 N.asteroides N206 prokMSA_id:052328 Z82223 N.asteroides N394 prokMSA_id:036370 Z82224 N.asteroides N411 prokMSA_id:049182 Z82225 N.asteroides N419 prokMSA_id:028472 Z82226 N.asteroides ATCC 49873 prokMSA_id:040151 Z82227 N.asteroides N450 prokMSA_id:029160 Z82228 N.asteroides N488 prokMSA_id:025190 Z82229 N.asteroides ATCC 49872 prokMSA_id:018053 Z82230 N.asteroides N565 prokMSA_id:021724 Z82231 N.asteroides N569 prokMSA_id:022413 Z82232 N.transvalensis N1045 prokMSA_id:050336 Z82233 N.transvalensis N1408 prokMSA_id:043592 Z82235 N.transvalensis N1080 prokMSA_id:048062 Z82236 N.transvalensis N1082 prokMSA_id:034077 Z82240 N.transvalensis N630 2.30.1.13.6.4.044 OTU 1 seq prokMSA_id:087186 AY268234 clone G4 small subunit 2.30.1.13.6.4.045 OTU 1 seq prokMSA_id:087548 AY268238 clone F6 small subunit 2.30.1.13.6.4.999 poor quality 102 seqs prokMSA_id:050090 AB054924 Nocardia sp. 1040 prokMSA_id:053258 AB060281 Nocardia seriolae genes ITS1 23S strain:N.21 prokMSA_id:054362 AB060282 Nocardia seriolae genes ITS1 23S strain:N.99001 prokMSA_id:098612 AB122713 Streptomyces gardneri prokMSA_id:098215 AB122797 Nocardia sp. 384B09 prokMSA_id:096163 AB122798 Nocardia sp. 384B10 prokMSA_id:095235 AB122821 Nocardia sp. 384D11 prokMSA_id:097352 AB122841 Nocardia sp. 384G06 prokMSA_id:096409 AB122847 Nocardia sp. 384H03 prokMSA_id:095456 AB122960 Nocardia sp. 410E11 prokMSA_id:095217 AB122962 Nocardia sp. 410F01 prokMSA_id:098523 AB122963 Nocardia sp. 410F03 prokMSA_id:098051 AB123071 Streptomyces sp. 413E08 prokMSA_id:097333 AB123073 Streptomyces sp. 413E12 prokMSA_id:097694 AB123076 Nocardia sp. 413F06 prokMSA_id:096036 AB123078 Nocardia sp. 413F10 prokMSA_id:095278 AB123079 Nocardia sp. 413F12 prokMSA_id:096663 AB123080 Nocardia sp. 413G01 prokMSA_id:096061 AB123098 Nocardia sp. 415A08 prokMSA_id:098703 AB123102 Nocardia sp. 415B01 prokMSA_id:096943 AB123108 Streptomyces sp. 415B11 prokMSA_id:098566 AB123120 Streptomyces sp. 415D01 prokMSA_id:097766 AB123121 Nocardia sp. 415D02 prokMSA_id:097082 AB123122 Nocardia sp. 415D03 prokMSA_id:097262 AB123125 Nocardia sp. 415D06 prokMSA_id:095577 AB123126 Nocardia sp. 415D07 prokMSA_id:096471 AB123127 Nocardia sp. 415D08 prokMSA_id:096548 AB123128 Nocardia sp. 415D10 prokMSA_id:096265 AB123131 Nocardia sp. 415E02 prokMSA_id:096309 AB123132 Nocardia sp. 415E03 prokMSA_id:097343 AB123462 Nocardia sp. 431D04 prokMSA_id:097786 AB123596 Nocardia sp. 303C05 prokMSA_id:097277 AB123653 Nocardia sp. 303H09 prokMSA_id:095516 AB123696 Nocardia sp. 306E01 prokMSA_id:098570 AB123699 Nocardia sp. 306E04 prokMSA_id:098092 AB123702 Nocardia sp. 306E07 prokMSA_id:098076 AB123708 Nocardia sp. 306F03 prokMSA_id:096325 AB123710 Nocardia sp. 306F05 prokMSA_id:098530 AB123723 Nocardia sp. 306G10 prokMSA_id:098615 AB123763 Nocardia sp. 310C08 prokMSA_id:096476 AB123765 Nocardia sp. 310C10 prokMSA_id:097338 AB123773 Streptomyces sp. 310D08 prokMSA_id:096444 AB123782 Streptomyces sp. 310E06 prokMSA_id:098863 AB123821 Nocardia sp. 310H10 prokMSA_id:095726 AB123822 Nocardia sp. 310H11 prokMSA_id:095725 AB123823 Nocardia sp. 310H12 prokMSA_id:097937 AB123858 Nocardia sp. 313D02 prokMSA_id:097529 AB123865 Nocardia sp. 313D11 prokMSA_id:096074 AB123867 Rhodococcus sp. 313E01 prokMSA_id:097997 AB123910 Nocardia sp. 313H12 prokMSA_id:096631 AB124081 Nocardia sp. 322C01 prokMSA_id:098082 AB124109 Nocardia sp. 322E08 prokMSA_id:097913 AB124192 Nocardia sp. 331F03 prokMSA_id:095466 AB124193 Nocardia sp. 331F04 prokMSA_id:098018 AB124304 Nocardia sp. 337A03 prokMSA_id:097490 AB124305 Streptomyces sp. 337A04 prokMSA_id:097638 AB124395 Nocardia sp. 340A09 prokMSA_id:097785 AB124409 Nocardia sp. 340C01 prokMSA_id:097944 AB124432 Nocardia sp. 340E02 prokMSA_id:031664 AF475084 Nocardia otitidiscaviarum prokMSA_id:026081 AJ298932 Nocardia salmonicida strain d25 prokMSA_id:034650 AJ409154 Nocardia sp. strain dtb42 prokMSA_id:021630 AJ437309 Nocardia paucivorans strain MB955 prokMSA_id:093320 AJ582584 clone M20-10 prokMSA_id:029899 AY039482 Soil S105D1 prokMSA_id:035566 AY039508 Soil S91D1 prokMSA_id:059363 AY081208 DGGE band U1 prokMSA_id:098231 AY262302 Nocardia transvalensis clone A27 prokMSA_id:095184 AY262303 Nocardia transvalensis clone A26 prokMSA_id:096780 AY262304 Nocardia transvalensis clone A25 prokMSA_id:098182 AY262305 Nocardia transvalensis clone A24 prokMSA_id:097682 AY262306 Nocardia transvalensis clone A23 prokMSA_id:096642 AY262307 Nocardia transvalensis clone A22 prokMSA_id:096791 AY262308 Nocardia transvalensis clone A21 prokMSA_id:097955 AY262309 Nocardia pseudobrasiliensis clone A20 prokMSA_id:098266 AY262310 Nocardia otitidiscaviarum clone A19 prokMSA_id:098455 AY262311 Nocardia otitidiscaviarum clone A18 prokMSA_id:096428 AY262312 Nocardia otitidiscaviarum clone A17 prokMSA_id:097217 AY262313 Nocardia otitidiscaviarum clone A16 prokMSA_id:098086 AY262314 Nocardia otitidiscaviarum clone A15 prokMSA_id:096241 AY262315 Nocardia otitidiscaviarum clone A14 prokMSA_id:096813 AY262316 Nocardia otitidiscaviarum clone A13 prokMSA_id:098365 AY262317 Nocardia nova clone A12 prokMSA_id:098262 AY262318 Nocardia nova clone A11 prokMSA_id:098359 AY262319 Nocardia nova clone A10 prokMSA_id:096083 AY262320 Nocardia nova clone A9 prokMSA_id:097908 AY262321 Nocardia farcinica clone A8 prokMSA_id:096726 AY262322 Nocardia brasiliensis clone A7 prokMSA_id:097340 AY262323 Nocardia brasiliensis clone A6 prokMSA_id:096865 AY262324 Nocardia paucivorans clone A4 prokMSA_id:097804 AY262325 Nocardia asteroides clone A2 prokMSA_id:095710 AY262326 Nocardia asteroides clone A5 prokMSA_id:095782 AY262327 Nocardia asteroides clone A3 prokMSA_id:095510 AY262328 Nocardia asteroides clone A1 prokMSA_id:087640 AY268242 clone A9 small subunit prokMSA_id:093846 AY358001 Actinobacterium iRIII6 prokMSA_id:094014 AY358002 Actinobacterium iRIII7 prokMSA_id:098558 AY376450 actinobacterium clone Ha1 prokMSA_id:013634 M59056 Nocardia otitidiscaviarum ATCC 14629 . prokMSA_id:013625 U27849 clone pCON32. prokMSA_id:013607 X53205 Nocardia asteroides str. N 19 DSM 43005. prokMSA_id:013618 Z46885 Nocardia otitidiscaviarum. 2.30.2 THERMOANAEROBACTER_AND_RELATIVES 1001 seqs 2.30.2.1 DFM.GEOTHERMICUM_GROUP 202 seqs 2.30.2.1.001 OTU 2 seqs prokMSA_id:013683 AF072863 str. strain 7. prokMSA_id:089131 AY327251 Anaerobic LR7.2 complete 2.30.2.1.002 OTU 3 seqs prokMSA_id:038022 AJ294431 Desulfotomaculum sp. DSM 7213 strain DSM 7213 clone 19A prokMSA_id:034816 AJ294432 Desulfotomaculum sp. DSM 7213 strain DSM 7213 clone 10 prokMSA_id:013682 Y11576 Desulfotomaculum sp. DSM 7213. 2.30.2.1.003 OTU 2 seqs prokMSA_id:013664 Y11575 Desulfotomaculum thermosapovorans str. MLF DSM 6562 . prokMSA_id:013681 Z26315 Desulfotomaculum thermosapovorans str. MLF DSM 6562 . 2.30.2.1.004 OTU 1 seq prokMSA_id:013678 Y11566 Desulfotomaculum acetoxidans str. 5575 DSM 771 . 2.30.2.1.005 OTU 1 seq prokMSA_id:013676 AF142890 clone EKHO-6. 2.30.2.1.007 OTU 1 seq prokMSA_id:013675 AF050589 clone WCHA1-17. 2.30.2.1.008 OTU 1 seq prokMSA_id:013674 AF050588 clone WCHB1-89. 2.30.2.1.009 OTU 1 seq prokMSA_id:013673 AF050576 clone WFeA1-02. 2.30.2.1.012 OTU 1 seq prokMSA_id:013669 AF009646 Desulfotomaculum kuznetsovii. 2.30.2.1.013 OTU 5 seqs prokMSA_id:029438 AJ294427 Desulfotomaculum kuznetsovii strain DSM 6115 prokMSA_id:045024 AY036903 Desulfotomaculum kuznetsovii strain 17 complete prokMSA_id:020277 AY036904 Desulfotomaculum kuznetsovii strain 17 rrnB complete prokMSA_id:067543 AY084078 Desulfotomaculum sp. V21 complete prokMSA_id:013668 Y11569 Desulfotomaculum kuznetsovii str. 17 DSM 6115 . 2.30.2.1.014 OTU 1 seq prokMSA_id:013667 Y14845 Sporotomaculum hydroxybenzoicum str. BT DSM 5475 . 2.30.2.1.015 OTU 1 seq prokMSA_id:013666 X91170 str. sporeB. 2.30.2.1.016 OTU 1 seq prokMSA_id:013662 X91169 str. sporeA. 2.30.2.1.017 OTU 1 seq prokMSA_id:013661 L15628 Desulfotomaculum thermobenzoicum. 2.30.2.1.018 OTU 1 seq prokMSA_id:013659 U88891 Desulfotomaculum halophilum SEBR 3139 . 2.30.2.1.019 OTU 4 seqs prokMSA_id:047271 AF442687 Desulfotomaculum sp. WW1 prokMSA_id:013657 M96665 Desulfotomaculum australicum str. AB33 ACM 3917 . prokMSA_id:013651 U33455 Desulfotomaculum thermocisternum str. ST90 DSM 10259 . prokMSA_id:013658 U33456 Desulfotomaculum sp. str. T93B. 2.30.2.1.020 OTU 1 seq prokMSA_id:013656 Y11580 Desulfotomaculum sp. DSM 7475. 2.30.2.1.022 OTU 6 seqs prokMSA_id:051349 AJ294430 Desulfotomaculum thermobenzoicum strain DSM 6193 clone 11 prokMSA_id:074466 AY007190 Desulfotomaculum sp. TPO complete prokMSA_id:013655 Y11573 Desulfotomaculum thermoacetoxidans str. CAMZ DSM 5813 . prokMSA_id:013671 Y11574 Desulfotomaculum thermobenzoicum str. TSB DSM 6193 . prokMSA_id:030024 Y11577 Desulfotomaculum sp. DSM 7474 prokMSA_id:013677 Y11578 Desulfotomaculum sp. DSM 7476. 2.30.2.1.023 OTU 1 seq prokMSA_id:013654 AF069293 Desulfotomaculum luciae str. SLT SMCC W644 . 2.30.2.1.024 OTU 1 seq prokMSA_id:013653 U68591 clone M4. 2.30.2.1.025 OTU 2 seqs prokMSA_id:047128 AJ294428 Desulfotomaculum geothermicum strain DSM 3669 prokMSA_id:013652 Y11567 Desulfotomaculum geothermicum str. BSD DSM 3669 . 2.30.2.1.026 OTU 1 seq prokMSA_id:017431 AB076610 Sporotomaculum syntrophicum 2.30.2.1.027 OTU 2 seqs prokMSA_id:017524 AF282252 Ferribacter thermoautotrophicus strain JW/JH-Fiji-2 prokMSA_id:021124 AF282253 Ferribacter thermoautotrophicus clone KA2a 2.30.2.1.028 OTU 1 seq prokMSA_id:021704 AF321086 TGO complete 2.30.2.1.029 OTU 1 seq prokMSA_id:022769 AB052383 Symbiobacterium sp. MN13 2.30.2.1.030 OTU 1 seq prokMSA_id:023108 AF424306 MERTZ_2CM_174 2.30.2.1.031 OTU 1 seq prokMSA_id:023520 AJ271450 Natronoanaerobium salstagnum isolate O-M12SP-2 2.30.2.1.032 OTU 1 seq prokMSA_id:023525 AY069974 Desulfotomaculum sp. Mechichi-2001 2.30.2.1.033 OTU 1 seq prokMSA_id:025424 AF465653 low G+C Gram-positive YNPRH70A 2.30.2.1.034 OTU 1 seq prokMSA_id:027351 AB077817 Sulfate-reducing Na82 2.30.2.1.035 OTU 2 seqs prokMSA_id:047626 AF269007 TM7LH12 prokMSA_id:027652 AF269023 NoosaAW44 2.30.2.1.036 OTU 1 seq prokMSA_id:030331 AB035723 Thermophilic propionate-oxidizing SI 2.30.2.1.037 OTU 5 seqs prokMSA_id:030367 AJ276558 Desulfotomaculum sp. DEM-KMe98-4 prokMSA_id:074775 AJ276559 Desulfotomaculum sp. DEM-KMe98-5 prokMSA_id:041122 AJ276561 Desulfotomaculum sp. DEM-KMe98-7 prokMSA_id:051415 AJ276562 Desulfotomaculum sp. DEM-KMe98-8 prokMSA_id:033888 AJ276563 Desulfotomaculum sp. DEM-KMe98-9 2.30.2.1.038 OTU 1 seq prokMSA_id:034470 AJ276566 Desulfotomaculum sp. DEM-KMe99-3 2.30.2.1.039 OTU 1 seq prokMSA_id:037250 AJ276565 Desulfotomaculum sp. DEM-KMe99-2 2.30.2.1.040 OTU 1 seq prokMSA_id:038532 AJ276564 Desulfotomaculum sp. DEM-KMe99-1 2.30.2.1.041 OTU 1 seq prokMSA_id:042719 AF423181 Toluene-degrading methanogenic consortium Eub 1 2.30.2.1.042 OTU 1 seq prokMSA_id:043356 AF407206 clone GIF17 2.30.2.1.043 OTU 1 seq prokMSA_id:072206 AJ271452 Natronoanaerobium aggerbacterium isolate G-M16NWC-4 2.30.2.1.044 OTU 1 seq prokMSA_id:045871 AF224801 clone Car63a 2.30.2.1.045 OTU 1 seq prokMSA_id:049033 AB004914 Symbiobacterium sp. No. 67 2.30.2.1.046 OTU 1 seq prokMSA_id:050826 AJ431344 firmicute isolate ikaite un-c22 2.30.2.1.047 OTU 1 seq prokMSA_id:051740 AJ294433 Desulfotomaculum sp. DSM 7213 strain DSM 7213 clone 14 2.30.2.1.048 OTU 1 seq prokMSA_id:070079 AF364910 clone clB14 2.30.2.1.049 OTU 1 seq prokMSA_id:060012 AB091328 clone:UT-2 2.30.2.1.050 OTU 1 seq prokMSA_id:060015 AB091326 clone:UP 2.30.2.1.051 OTU 1 seq prokMSA_id:060016 AB091324 clone:JP 2.30.2.1.052 OTU 1 seq prokMSA_id:068349 AF481213 Firmicutes oral clone MCE7_107 E1 2.30.2.1.053 OTU 1 seq prokMSA_id:071451 AF364908 clone clB70 2.30.2.1.054 OTU 2 seqs prokMSA_id:071619 AF295656 Desulfotomaculum sp. 175 prokMSA_id:072988 AF295662 Desulfotomaculum sp. 171 2.30.2.1.055 OTU 1 seq prokMSA_id:072617 AF545655 candidate division BD clone 13stbd 2.30.2.1.056 OTU 1 seq prokMSA_id:073391 AF295657 Desulfotomaculum sp. 176 2.30.2.1.057 OTU 1 seq prokMSA_id:073970 AJ271451 Natronoanaerobium halophilum isolate G-M14CH-4 2.30.2.1.058 OTU 1 seq prokMSA_id:078145 AY171379 clone s56 2.30.2.1.059 OTU 1 seq prokMSA_id:078677 AY181049 clone 1026B114 2.30.2.1.060 OTU 2 seqs prokMSA_id:078817 AY181044 clone 1026B117 prokMSA_id:078818 AY181047 clone 1026B3 2.30.2.1.061 OTU 1 seq prokMSA_id:079013 AY181050 clone 1026B236 2.30.2.1.062 OTU 1 seq prokMSA_id:080783 AJ538045 clone CF27 2.30.2.1.063 OTU 2 seqs prokMSA_id:081111 AY218623 clone KD4-106 prokMSA_id:081374 AY218732 clone KD5-16 2.30.2.1.064 OTU 3 seqs prokMSA_id:081356 AY218709 clone KD7-38 prokMSA_id:081713 AY218711 clone KD7-47 prokMSA_id:081348 AY218764 clone KD6-66 2.30.2.1.065 OTU 1 seq prokMSA_id:082251 AY218678 clone KD8-105 2.30.2.1.066 OTU 1 seq prokMSA_id:082640 AB092904 clone:AHU19 2.30.2.1.067 OTU 2 seqs prokMSA_id:084932 AB092869 clone:ALU27 prokMSA_id:083718 AB092903 clone:AHU18 2.30.2.1.068 OTU 1 seq prokMSA_id:084697 AY228700 clone SSE8 2.30.2.1.069 OTU 1 seq prokMSA_id:085314 AB092897 clone:AHU12 2.30.2.1.070 OTU 1 seq prokMSA_id:086129 AB092894 clone:AHU09 2.30.2.1.071 OTU 1 seq prokMSA_id:086260 AB092871 clone:ALU29 2.30.2.1.072 OTU 1 seq prokMSA_id:086580 AB092893 clone:AHU08 2.30.2.1.073 OTU 1 seq prokMSA_id:088120 AY297965 clone TA55_Ba_5 2.30.2.1.074 OTU 1 seq prokMSA_id:088814 AY297970 clone TA55_Ba_18 2.30.2.1.075 OTU 1 seq prokMSA_id:089364 AY289488 soil clone DS-127 2.30.2.1.076 OTU 1 seq prokMSA_id:089556 AY297976 clone TA55_Ba_61 2.30.2.1.077 OTU 1 seq prokMSA_id:089600 AY245489 ML23_ANME11 2.30.2.1.078 OTU 1 seq prokMSA_id:089876 AY297968 clone TA55_Ba_12 2.30.2.1.079 OTU 1 seq prokMSA_id:090083 AY297984 clone TA55_Ba_132 2.30.2.1.080 OTU 1 seq prokMSA_id:094004 AJ582053 clone KCM-C-23 2.30.2.1.081 OTU 1 seq prokMSA_id:097951 AY160825 clone COB P4-16 2.30.2.1.999 poor quality 96 seqs prokMSA_id:047951 AB011344 clone: TUG16 prokMSA_id:074525 AB011345 clone: TUG17 prokMSA_id:044203 AB036499 KH1-2-10 prokMSA_id:049964 AB036504 KH1-5-06 prokMSA_id:042748 AB036505 KH1-5-08 prokMSA_id:021376 AB079464 clone:TOYO-3-B prokMSA_id:025545 AB079466 clone:TOYO-5-B prokMSA_id:042460 AB079468 clone:TOYO-7-C prokMSA_id:013670 AF027052 clone OPS54A. prokMSA_id:013672 AF027056 clone OPT76. prokMSA_id:013660 AF097024 Desulfotomaculum alkaliphilum str. S1. prokMSA_id:036614 AF168365 Desulfotomaculum sapomandens prokMSA_id:072567 AF364909 clone clB32 prokMSA_id:040590 AF364922 clone clI59 prokMSA_id:068037 AF365714 clone BT60DS1BG8 prokMSA_id:061247 AF432650 clone NOW2.133WL prokMSA_id:061227 AF432673 clone NMS8.160WL prokMSA_id:075895 AF432730 clone S22.47WL prokMSA_id:076299 AF432773 clone C47.41PG prokMSA_id:042422 AF442686 Desulfotomaculum sp. TPOSR prokMSA_id:046751 AF459047 E5-46-SC1-119 prokMSA_id:035426 AF459048 E5-46-SC1-120 prokMSA_id:036244 AF459052 E5-46-SC1-124 prokMSA_id:019094 AF459053 E5-46-SC1-125 prokMSA_id:051123 AF459054 E5-46-SC1-126 prokMSA_id:050940 AF459056 E5-46-SC1-128 prokMSA_id:018114 AF459058 E5-46-SC1-130 prokMSA_id:027192 AF459059 E5-46-SC1-131 prokMSA_id:041136 AF459060 E5-46-SC1-132 prokMSA_id:019138 AF459061 E5-46-SC1-133 prokMSA_id:040409 AF459063 E5-46-SC1-135 prokMSA_id:037602 AF459065 E5-46-SC1-137 prokMSA_id:051144 AF459068 E5-46-SC1-140 prokMSA_id:033510 AF459075 E5-46-SC1-147 prokMSA_id:045000 AF459076 E5-46-SC1-148 prokMSA_id:068584 AF486686 clone W6-38-SC1-108 prokMSA_id:068582 AF486689 clone W6-38-SC1-111 prokMSA_id:068777 AF490371 low G+C Gram-positive clone AKB12 prokMSA_id:082317 AF510407 LS1701/01 prokMSA_id:073409 AF544857 Gram-positive clone D1C-46 prokMSA_id:073121 AF544863 Gram-positive clone D1C-69 prokMSA_id:057878 AF546908 clone E5-46-BF1-151 prokMSA_id:057877 AF546910 clone E5-46-BF1-153 prokMSA_id:057874 AF546912 clone E5-46-BF1-156 prokMSA_id:057869 AF546915 clone E5-46-BF1-159 prokMSA_id:057868 AF546918 clone E5-46-BF1-162 prokMSA_id:055470 AF546919 clone E5-46-BF1-163 prokMSA_id:055370 AF546925 clone E5-46-BF1-169 prokMSA_id:057862 AF546927 clone E5-46-BF1-171 prokMSA_id:057855 AF546934 clone E5-46-BH1-12/7/98-007 prokMSA_id:057854 AF546935 clone E5-46-BH1-12/7/98-008 prokMSA_id:057853 AF546936 clone E5-46-BH1-12/7/98-009 prokMSA_id:057851 AF546937 clone E5-46-BH1-12/7/98-010 prokMSA_id:057852 AF546939 clone E5-46-BH1-12/7/98-012 prokMSA_id:057846 AF546940 clone E5-46-BH1-12/7/98-013 prokMSA_id:057849 AF546941 clone E5-46-BH1-12/7/98-014 prokMSA_id:057850 AF546943 clone E5-46-BH1-12/7/98-016 prokMSA_id:055695 AF546944 clone E5-46-BH1-12/7/98-017 prokMSA_id:057845 AF546945 clone E5-46-BH1-12/7/98-018 prokMSA_id:057844 AF546946 clone E5-46-BH1-12/7/98-019 prokMSA_id:057840 AF546947 clone E5-46-BH1-12/7/98-020 prokMSA_id:057835 AF546955 clone E5-46-BH1-12/7/98-028 prokMSA_id:057834 AF546958 clone E5-46-BH1-12/7/98-031 prokMSA_id:057827 AF546962 clone E5-46-BH1-2/2/99-065 prokMSA_id:057828 AF546963 clone E5-46-BH1-2/2/99-066 prokMSA_id:055350 AF546964 clone E5-46-BH1-2/2/99-067 prokMSA_id:057826 AF546965 clone E5-46-BH1-2/2/99-068 prokMSA_id:057821 AF546967 clone E5-46-BH1-2/2/99-070 prokMSA_id:057819 AF546968 clone E5-46-BH1-2/2/99-071 prokMSA_id:057825 AF546969 clone E5-46-BH1-2/2/99-072 prokMSA_id:057824 AF546970 clone E5-46-BH1-2/2/99-073 prokMSA_id:057820 AF546972 clone E5-46-BH1-2/2/99-075 prokMSA_id:056314 AF546973 clone E5-46-BH1-2/2/99-076 prokMSA_id:057818 AF546975 clone E5-46-BH1-2/2/99-078 prokMSA_id:055500 AF546976 clone E5-46-BH1-2/2/99-079 prokMSA_id:057822 AF546977 clone E5-46-BH1-2/2/99-080 prokMSA_id:057813 AF546980 clone E5-46-BH1-2/2/99-083 prokMSA_id:057815 AF546983 clone E5-46-BH1-2/2/99-086 prokMSA_id:057812 AF546986 clone E5-46-BH1-2/2/99-089 prokMSA_id:057811 AF546987 clone E5-46-BH1-2/2/99-090 prokMSA_id:057808 AF546988 clone E5-46-BH1-2/2/99-091 prokMSA_id:057806 AF546989 clone E5-46-BH1-2/2/99-092 prokMSA_id:057797 AF546990 clone E5-46-BH1-2/2/99-093 prokMSA_id:013665 AJ012599 unnamed organism. prokMSA_id:013679 AJ012600 unnamed organism. prokMSA_id:013680 AJ012601 unnamed organism. prokMSA_id:022299 AJ232824 clone LBS21 prokMSA_id:024756 AJ276370 Desulfotomaculum sp. strain ASRB-Zg prokMSA_id:056533 AJ517870 clone C30.2 prokMSA_id:063030 AY122596 clone MW2-07 prokMSA_id:063021 AY122603 clone OSS-33 prokMSA_id:075808 AY174194 Acidobacteriales clone WS096 prokMSA_id:077164 AY174195 Acidobacteriales clone WS089 prokMSA_id:080360 AY192279 candidate division BD clone P1-7G prokMSA_id:089193 AY305281 clone BND4 prokMSA_id:013663 X80789 Desulfotomaculum geothermicum str. BSD DSM 3669 . 2.30.2.2 SYNTROPHOMONAS_ASSEMBLAGE 55 seqs 2.30.2.2.001 OTU 1 seq prokMSA_id:013692 AF022249 Syntrophomonas sapovorans. 2.30.2.2.002 OTU 1 seq prokMSA_id:013691 AB021305 str. TGB-C1. 2.30.2.2.003 OTU 1 seq prokMSA_id:013690 AF050586 clone WCHB1-82. 2.30.2.2.004 OTU 1 seq prokMSA_id:013689 X99980 Thermosyntropha lipolytica str. JW/VS-265. 2.30.2.2.005 OTU 1 seq prokMSA_id:013688 AF022248 Syntrophomonas wolfei str. LYB. 2.30.2.2.006 OTU 1 seq prokMSA_id:013687 AB021306 Syntrophomonas MGB-C1 str. MGB-C1. 2.30.2.2.007 OTU 1 seq prokMSA_id:013685 AF050585 clone WCHB1-71. 2.30.2.2.008 OTU 2 seqs prokMSA_id:021349 AJ347757 clone ST-12K17 prokMSA_id:018783 AJ347758 clone ST-3K15 2.30.2.2.009 OTU 1 seq prokMSA_id:024671 AF349760 TCE4 2.30.2.2.010 OTU 1 seq prokMSA_id:024677 AY064218 Anaerobranca californiensis strain Paoha-1 2.30.2.2.011 OTU 1 seq prokMSA_id:026077 AF286032 Saltmarsh clone LCP-89 2.30.2.2.012 OTU 1 seq prokMSA_id:034346 AJ251214 Pelospora glutarica strain WoGl3 2.30.2.2.013 OTU 1 seq prokMSA_id:034976 AF058003 RFLP11 2.30.2.2.014 OTU 1 seq prokMSA_id:045167 AF203703 Anaerobranca bogoriae complete 2.30.2.2.015 OTU 1 seq prokMSA_id:062405 AF529116 Gram-positive clone FTLM142 2.30.2.2.016 OTU 1 seq prokMSA_id:066121 AB074932 low G+C Gram-positive clone:KB11 2.30.2.2.017 OTU 1 seq prokMSA_id:070498 AF275925 AA64 2.30.2.2.018 OTU 1 seq prokMSA_id:072821 AF455062 clone B8 2.30.2.2.019 OTU 1 seq prokMSA_id:073316 AF455055 clone B1 2.30.2.2.020 OTU 1 seq prokMSA_id:077374 AF482448 clone R6b2 2.30.2.2.021 OTU 3 seqs prokMSA_id:090607 AB098336 Syntrophomonas sp. TB-6 prokMSA_id:077544 AF482442 clone R4b6 prokMSA_id:077471 AF482445 clone R5p27 2.30.2.2.022 OTU 1 seq prokMSA_id:077473 AF482440 clone R4b14 2.30.2.2.023 OTU 1 seq prokMSA_id:078758 AJ536887 clone JG30-KF-AS9 2.30.2.2.024 OTU 1 seq prokMSA_id:082994 AY231346 clone ER2_21 2.30.2.2.025 OTU 1 seq prokMSA_id:083865 AY231341 clone ER2_16 2.30.2.2.026 OTU 1 seq prokMSA_id:084167 AY280637 low G+C Gram-positive clone G1-1 2.30.2.2.027 OTU 1 seq prokMSA_id:086052 AY280638 low G+C Gram-positive clone G1-6 2.30.2.2.028 OTU 1 seq prokMSA_id:086635 AY231328 clone ER2_3 2.30.2.2.029 OTU 1 seq prokMSA_id:087293 AY290767 Syntrophomonas flectens 2.30.2.2.030 OTU 1 seq prokMSA_id:092321 AY341821 Syntrophomonadaceae genomosp. P1 clone P4PB_66 2.30.2.2.031 OTU 1 seq prokMSA_id:093240 AJ582200 firmicute clone Gitt-GS-89A 2.30.2.2.032 OTU 1 seq prokMSA_id:096419 AJ543755 clone 1 2.30.2.2.999 poor quality 20 seqs prokMSA_id:037960 AB011325 clone: MUG33 prokMSA_id:040110 AB011343 clone: TUG15 prokMSA_id:052775 AB079467 clone:TOYO-6-C prokMSA_id:072548 AF455064 clone B10 prokMSA_id:019357 AJ238369 DGGE band 4 prokMSA_id:038729 AJ290987 SHE-145 prokMSA_id:071524 AJ431343 firmicute isolate ikaite un-c18 prokMSA_id:036649 AY061974 Carboxydocella thermoautotrophica prokMSA_id:072753 AY064217 Anaerobranca californiensis strain Paoha-2 prokMSA_id:083612 AY092226 clone BF12 prokMSA_id:081771 AY217432 MTCE-T2 1A prokMSA_id:088022 AY261414 clone RFLP U92 prokMSA_id:096874 AY422350 Anaerobic F1/B-2 prokMSA_id:097292 AY422351 Anaerobic F1/B-1 prokMSA_id:097099 AY422352 Anaerobic F4/B-1 prokMSA_id:096359 AY422353 Anaerobic F4/B-2 prokMSA_id:013684 M26491 Syntrophospora bryantii DSM 3014B . prokMSA_id:013686 M26492 Syntrophomonas wolfei DSM 2245 . prokMSA_id:013693 U21809 Anaerobranca horikoshii str. JW/YL-138 DSM 9786 . prokMSA_id:019074 U81675 clone vadinBC32 2.30.2.3 MOORELLA_GROUP 149 seqs 2.30.2.3.003 OTU 1 seq prokMSA_id:013718 AJ131537 clone ST12. 2.30.2.3.004 OTU 1 seq prokMSA_id:013717 AB020336 str. PB. 2.30.2.3.009 OTU 1 seq prokMSA_id:013712 AF027087 clone OPB54. 2.30.2.3.010 OTU 1 seq prokMSA_id:013711 AF142787 clone ACE-5. 2.30.2.3.011 OTU 1 seq prokMSA_id:013710 AF142965 clone TAYNAYA-2. 2.30.2.3.012 OTU 1 seq prokMSA_id:013709 AJ133615 clone KTK 14. 2.30.2.3.013 OTU 1 seq prokMSA_id:013708 U82327 Moorella glycerini str. JW/AS-Y6 DSM 11254 . 2.30.2.3.014 OTU 3 seqs prokMSA_id:013703 AJ242494 Moorella thermoacetica str. ET-5a. prokMSA_id:013704 L09168 Moorella thermoautotrophica str. JW 701/3 DSM 1974 . prokMSA_id:013697 L09168 Moorella thermoautotrophica. 2.30.2.3.015 OTU 1 seq prokMSA_id:013702 AF142820 clone ACE-45. 2.30.2.3.016 OTU 1 seq prokMSA_id:013701 AF142824 clone BURTON-4. 2.30.2.3.017 OTU 1 seq prokMSA_id:013700 AF142848 clone BURTON-30. 2.30.2.3.018 OTU 1 seq prokMSA_id:013699 AF142966 clone TAYNAYA-18. 2.30.2.3.019 OTU 3 seqs prokMSA_id:013698 AF125206 clone I025. prokMSA_id:081310 AY144353 candidate division TM7 clone SBG1 prokMSA_id:091484 AY331416 Candidate division TM7 genomosp. P1 clone P4PB_40 2.30.2.3.020 OTU 1 seq prokMSA_id:019248 AY053496 AT425_EubA5 2.30.2.3.021 OTU 1 seq prokMSA_id:019542 AF333543 clone R141 2.30.2.3.022 OTU 1 seq prokMSA_id:020457 AB062280 Thermoanaerobacter sp. ToBE 2.30.2.3.023 OTU 1 seq prokMSA_id:021153 AF146255 CLEAR-33 2.30.2.3.024 OTU 1 seq prokMSA_id:022245 AF323760 clone BA021 complete 2.30.2.3.025 OTU 1 seq prokMSA_id:023167 AF323773 clone BA087 complete 2.30.2.3.026 OTU 1 seq prokMSA_id:027974 AF391985 thermal soil clone YNPFFP2 2.30.2.3.027 OTU 1 seq prokMSA_id:028429 AF351216 clone 12-31 2.30.2.3.028 OTU 1 seq prokMSA_id:056514 AF507696 soil clone C062 2.30.2.3.029 OTU 1 seq prokMSA_id:055535 AB069805 clone:CS8.21 2.30.2.3.032 OTU 1 seq prokMSA_id:038133 AJ131536 thermophilic ST10 2.30.2.3.033 OTU 1 seq prokMSA_id:038187 AF391987 thermal soil clone YNPFFP6 2.30.2.3.034 OTU 1 seq prokMSA_id:038879 AF254401 UASB_TL94 complete 2.30.2.3.035 OTU 1 seq prokMSA_id:038927 AF146232 CLEAR-6 2.30.2.3.036 OTU 1 seq prokMSA_id:043264 AF408641 clone PCEDR63 2.30.2.3.037 OTU 1 seq prokMSA_id:046382 AF323764 clone BA042 complete 2.30.2.3.038 OTU 1 seq prokMSA_id:048617 AF209779 VC2.1 Bac47 complete 2.30.2.3.039 OTU 1 seq prokMSA_id:051926 AF339745 V5 2.30.2.3.040 OTU 1 seq prokMSA_id:062677 AF507885 low G+C Gram-positive clone ML635J-16 2.30.2.3.041 OTU 1 seq prokMSA_id:062678 AF507881 low G+C Gram-positive clone ML635J-7 2.30.2.3.042 OTU 2 seqs prokMSA_id:074641 AF507875 low G+C Gram-positive clone ML635J-9 prokMSA_id:062680 AF507876 low G+C Gram-positive clone ML623J-3 2.30.2.3.043 OTU 1 seq prokMSA_id:062682 AF507879 low G+C Gram-positive clone ML623J-19 2.30.2.3.044 OTU 1 seq prokMSA_id:063105 AY093477 clone MB-C2-106 2.30.2.3.048 OTU 1 seq prokMSA_id:063234 AF523992 clone FW32 2.30.2.3.049 OTU 1 seq prokMSA_id:063297 AF523920 clone RCP2-24 2.30.2.3.050 OTU 1 seq prokMSA_id:063298 AF523922 clone RCP1-41 2.30.2.3.051 OTU 1 seq prokMSA_id:063782 AY114325 Verrucomicrobia clone LD1-PA39 2.30.2.3.052 OTU 1 seq prokMSA_id:066114 AB074938 low G+C Gram-positive clone:KU8 2.30.2.3.053 OTU 1 seq prokMSA_id:066541 AY100540 clone cvf61023 2.30.2.3.054 OTU 1 seq prokMSA_id:066555 AY100526 clone cvf65091 2.30.2.3.055 OTU 1 seq prokMSA_id:072683 AF419682 CS_B013 2.30.2.3.057 OTU 21 seqs prokMSA_id:013719 AB015269 str. JTB138. prokMSA_id:013720 AB015271 str. JTB243. prokMSA_id:063578 AB069793 clone:CS5.10 prokMSA_id:080312 AB094811 clone:OHKB2.35 prokMSA_id:013715 AF029043 clone SB-15. prokMSA_id:013716 AF029050 clone SB-45. prokMSA_id:030883 AF142964 TAYNAYA-1 prokMSA_id:013713 AF154105 clone GCA018. prokMSA_id:013714 AF154106 clone GCA025. prokMSA_id:074279 AF419693 C1_B023 prokMSA_id:052885 AF424416 MERTZ_21CM_107 prokMSA_id:077784 AJ535219 clone Hyd01-10 prokMSA_id:063127 AY093459 clone MA-A2-104 prokMSA_id:063112 AY093469 clone MB-B2-103 prokMSA_id:089931 AY191329 isolate ODP1176A1H3z_16_B prokMSA_id:088610 AY191332 isolate ODP1176A1H3z_3_B prokMSA_id:089182 AY191337 isolate ODP1176A1H_4_B prokMSA_id:085667 AY197377 clone B01R005 prokMSA_id:086362 AY197412 clone B04R002 prokMSA_id:096510 AY211667 Gram-positive clone GoM GC234 019E prokMSA_id:096092 AY211673 Gram-positive clone GoM GC234 602E 2.30.2.3.058 OTU 1 seq prokMSA_id:075104 AB086398 Moorella sp. F21 cds 2.30.2.3.059 OTU 1 seq prokMSA_id:075551 AJ519408 clone JG37-AG-4 2.30.2.3.060 OTU 3 seqs prokMSA_id:076993 AY164344 clone ALIB-33 prokMSA_id:075639 AY164379 clone BLIB-54 prokMSA_id:076904 AY164443 clone ULIB-62 2.30.2.3.061 OTU 1 seq prokMSA_id:078308 AY171344 clone s101 2.30.2.3.062 OTU 1 seq prokMSA_id:078653 AY181043 clone 1026B104 2.30.2.3.063 OTU 1 seq prokMSA_id:079090 AJ536865 clone JG30-KF-A11 2.30.2.3.064 OTU 1 seq prokMSA_id:079670 AB094940 clone:OHKB11.51 2.30.2.3.065 OTU 1 seq prokMSA_id:079814 AB094867 clone:OHKB6.20 2.30.2.3.066 OTU 1 seq prokMSA_id:079847 AB094873 clone:OHKB6.47 2.30.2.3.067 OTU 1 seq prokMSA_id:079855 AB094880 clone:OHKB6.89 2.30.2.3.068 OTU 1 seq prokMSA_id:079909 AB094956 clone:OHKB16.55 2.30.2.3.069 OTU 1 seq prokMSA_id:079917 AB094805 clone:OHKB2.22 2.30.2.3.070 OTU 1 seq prokMSA_id:079923 AB094910 clone:OHKB7.80 2.30.2.3.071 OTU 1 seq prokMSA_id:079957 AB094827 clone:OHKB2.85 2.30.2.3.072 OTU 1 seq prokMSA_id:080035 AB094874 clone:OHKB6.48 2.30.2.3.073 OTU 1 seq prokMSA_id:080039 AB094863 clone:OHKB6.1 2.30.2.3.074 OTU 1 seq prokMSA_id:080251 AB094943 clone:OHKB11.70 2.30.2.3.075 OTU 1 seq prokMSA_id:080479 AB094868 clone:OHKB6.22 2.30.2.3.076 OTU 1 seq prokMSA_id:080520 AB094826 clone:OHKB2.83 2.30.2.3.077 OTU 1 seq prokMSA_id:080555 AB094878 clone:OHKB6.61 2.30.2.3.078 OTU 1 seq prokMSA_id:080706 AB094869 clone:OHKB6.24 2.30.2.3.079 OTU 1 seq prokMSA_id:080745 AB094876 clone:OHKB6.52 2.30.2.3.080 OTU 1 seq prokMSA_id:080835 AB094819 clone:OHKB2.65 2.30.2.3.081 OTU 2 seqs prokMSA_id:080859 AB094921 clone:OHKB9.37 prokMSA_id:089379 AY191353 isolate ODP1176A6H_16_B 2.30.2.3.082 OTU 1 seq prokMSA_id:080883 AB094816 clone:OHKB2.44 2.30.2.3.083 OTU 1 seq prokMSA_id:080886 AB094901 clone:OHKB7.51 2.30.2.3.084 OTU 1 seq prokMSA_id:080893 AB094958 clone:OHKB16.70 2.30.2.3.085 OTU 1 seq prokMSA_id:081021 AB094872 clone:OHKB6.45 2.30.2.3.086 OTU 1 seq prokMSA_id:082633 AF487538 Moorella sp. TMS 2.30.2.3.087 OTU 3 seqs prokMSA_id:085421 AB106352 Anaerobic syntrophic JE prokMSA_id:083916 AB106353 Anaerobic syntrophic JL prokMSA_id:082872 AB106354 Anaerobic syntrophic OL 2.30.2.3.088 OTU 1 seq prokMSA_id:083567 AB092911 clone:AHU26 2.30.2.3.089 OTU 1 seq prokMSA_id:083693 AY197406 clone B03R012 2.30.2.3.090 OTU 1 seq prokMSA_id:084533 AY250853 clone BPS103 2.30.2.3.091 OTU 1 seq prokMSA_id:084829 AB092913 clone:AHU28 2.30.2.3.092 OTU 1 seq prokMSA_id:089268 AY191352 isolate ODP1176A6H_15_B 2.30.2.3.093 OTU 1 seq prokMSA_id:089604 AY297982 clone TA55_Ba_115 2.30.2.3.094 OTU 1 seq prokMSA_id:089635 AY297969 clone TA55_Ba_15 2.30.2.3.095 OTU 1 seq prokMSA_id:090354 AY191338 isolate ODP1176A1H_5_B 2.30.2.3.096 OTU 1 seq prokMSA_id:095875 AY211679 delta clone GoM GC234 618E 2.30.2.3.097 OTU 1 seq prokMSA_id:098105 AJ575942 Bacteroidetes clone Genesis T2-PP12-425 2.30.2.3.999 poor quality 34 seqs prokMSA_id:040560 AB011308 clone: MUG16 prokMSA_id:046287 AB011341 clone: TUG13 prokMSA_id:032567 AB011346 clone: TUG18 prokMSA_id:080073 AB094802 clone:OHKB2.15 prokMSA_id:068969 AF146256 SCALE-3 prokMSA_id:074757 AF147496 SCALE-16 prokMSA_id:043850 AF353300 Tui4-28 prokMSA_id:067115 AF499338 clone JCL4-63 prokMSA_id:062676 AF507882 low G+C Gram-positive clone ML635J-10 prokMSA_id:062671 AF507886 low G+C Gram-positive clone ML635J-43 prokMSA_id:055472 AF540822 clone DP10u25 prokMSA_id:059440 AF540823 clone DP10u24 prokMSA_id:071184 AF544852 Gram-positive clone D1C-29 prokMSA_id:069623 AF544865 Gram-positive clone D1C-73 prokMSA_id:071682 AJ305054 43-2 prokMSA_id:072778 AJ305056 38-1 prokMSA_id:074380 AJ305060 63-1 prokMSA_id:058345 AJ489415 clone NS-G38 prokMSA_id:082509 AJ495642 isolate SA-46 prokMSA_id:057066 AJ518478 clone Qui2P1-32 prokMSA_id:056917 AJ518675 clone Sai4P1-29 prokMSA_id:055476 AJ518733 clone Sai4P3-57 prokMSA_id:030418 AY038519 firmicute clone CD1G1 prokMSA_id:068847 AY072256 temperate forest soil C6041 prokMSA_id:066881 AY096130 clone M1-29 prokMSA_id:076671 AY159200 RO_clone_116 prokMSA_id:084679 AY197414 clone B04R010 prokMSA_id:087417 AY261425 clone RFLP U125 prokMSA_id:013705 M59121 Moorella thermoacetica ATCC 39073. prokMSA_id:013707 X58352 Moorella thermoacetica str. LJD . prokMSA_id:013695 X58353 Moorella thermoautotrophica str. JW 701/3 DSM 1974 . prokMSA_id:013696 X58354 Moorella thermoautotrophica str. JW 701/5. prokMSA_id:013694 X77849 Moorella thermoautotrophica str. JW 701/3 DSM 1974 . prokMSA_id:013706 X84489 unnamed organism. 2.30.2.4 TAR.MARIANENSIS_GROUP 105 seqs 2.30.2.4.001 OTU 1 seq prokMSA_id:013727 AB015272 str. JTB326. 2.30.2.4.002 OTU 1 seq prokMSA_id:013726 AB015578 str. BD7-2. 2.30.2.4.003 OTU 1 seq prokMSA_id:013725 AF068809 VC2.1 Bac35 complete 2.30.2.4.004 OTU 1 seq prokMSA_id:013724 AF015925 clone OctSpA1-106. 2.30.2.4.005 OTU 1 seq prokMSA_id:013722 AF013536 unnamed organism. 2.30.2.4.006 OTU 3 seqs prokMSA_id:013721 AB011495 Thermaerobacter marianensis str. 7p75a. prokMSA_id:050462 AB061441 Thermaerobacter nagasakiense prokMSA_id:022146 AF343566 Thermaerobacter subterraneus complete 2.30.2.4.007 OTU 1 seq prokMSA_id:069069 AF545647 candidate division BD clone bdgeo17 2.30.2.4.008 OTU 1 seq prokMSA_id:019489 AF358013 clone LO13.20 2.30.2.4.009 OTU 1 seq prokMSA_id:056650 AF524020 clone FW125 2.30.2.4.010 OTU 1 seq prokMSA_id:022051 AY053483 AT425_EubC11 2.30.2.4.011 OTU 1 seq prokMSA_id:069580 AF545653 candidate division BD clone bdgeo53 2.30.2.4.012 OTU 1 seq prokMSA_id:031174 AJ252607 Agricultural soil clone SC-I-2 2.30.2.4.013 OTU 1 seq prokMSA_id:055965 AF545652 candidate division BD clone bdb2 2.30.2.4.014 OTU 1 seq prokMSA_id:031896 AF333522 actinobacterium clone R171 2.30.2.4.015 OTU 1 seq prokMSA_id:036253 AF424420 actinobacterium MERTZ_2CM_192 2.30.2.4.016 OTU 1 seq prokMSA_id:071826 AF545641 candidate division BD clone 13ful 2.30.2.4.017 OTU 1 seq prokMSA_id:069186 AF545644 candidate division BD clone BDWYO7 2.30.2.4.018 OTU 2 seqs prokMSA_id:071271 AF351214 clone 12-24 prokMSA_id:045522 AF351217 clone 12-48 2.30.2.4.019 OTU 1 seq prokMSA_id:049727 AF424432 actinobacterium MERTZ_21CM_395 2.30.2.4.020 OTU 1 seq prokMSA_id:055368 AF491670 clone SFD1-37 2.30.2.4.021 OTU 1 seq prokMSA_id:060181 AJ347028 clone TK19 2.30.2.4.022 OTU 1 seq prokMSA_id:062410 AF529103 Gram-positive clone FTL22 2.30.2.4.023 OTU 1 seq prokMSA_id:065681 AF507703 soil clone C114 2.30.2.4.024 OTU 1 seq prokMSA_id:069097 AF545645 candidate division BD clone BDWYO14 2.30.2.4.025 OTU 1 seq prokMSA_id:069317 AF545650 candidate division BD clone pbd5 2.30.2.4.026 OTU 1 seq prokMSA_id:069760 AF545643 candidate division BD clone BDWYO8 2.30.2.4.027 OTU 1 seq prokMSA_id:074132 AY145852 candidate division BD clone BDGEO13 2.30.2.4.028 OTU 1 seq prokMSA_id:074941 AJ532726 clone JG34-KF-314 2.30.2.4.029 OTU 1 seq prokMSA_id:075411 AY154572 earthworm cast clone c210 2.30.2.4.030 OTU 1 seq prokMSA_id:076374 AF432621 clone C17.51WL 2.30.2.4.031 OTU 1 seq prokMSA_id:079951 AY192277 candidate division BD clone W2a-1F 2.30.2.4.032 OTU 1 seq prokMSA_id:080909 AY192990 Gemmatimonas sp. clone BolB6 2.30.2.4.033 OTU 1 seq prokMSA_id:085540 AY217504 Gemmatimonadetes clone WCB100 2.30.2.4.034 OTU 1 seq prokMSA_id:086373 AY226305 delta clone DBBB-60 2.30.2.4.035 OTU 1 seq prokMSA_id:088657 AJ567559 clone MBMPE45 2.30.2.4.036 OTU 2 seqs prokMSA_id:088919 AJ567536 clone MBMPE10 prokMSA_id:090275 AJ567538 clone MBMPE12 2.30.2.4.037 OTU 1 seq prokMSA_id:089061 AY289483 soil clone DS-143 2.30.2.4.038 OTU 1 seq prokMSA_id:093550 AJ582057 clone KCM-C-51 2.30.2.4.999 poor quality 63 seqs prokMSA_id:069298 AF009987 complete prokMSA_id:013723 AF009988 unnamed organism. prokMSA_id:024711 AF078378 Grassland soil clone sl2_518 prokMSA_id:038731 AF128678 soil S0134 prokMSA_id:039522 AF181925 clone 23d/3 prokMSA_id:022492 AF186453 sponge symbiont PAWS68 prokMSA_id:077423 AF188873 M11 prokMSA_id:077569 AF188877 40 prokMSA_id:053590 AF193568 clone n11d prokMSA_id:047260 AF337824 copper smeltery D54 prokMSA_id:030237 AF388333 clone Ac61 prokMSA_id:052127 AF388342 clone Ac13 prokMSA_id:060964 AF432603 clone NOW2.30WL prokMSA_id:060967 AF432604 clone NMW3.55WL prokMSA_id:060965 AF432605 clone NMW3.71WL prokMSA_id:055397 AF432606 clone SMW4.66WL prokMSA_id:060966 AF432608 clone NOS7.60WL prokMSA_id:060963 AF432609 clone NMS8.159WL prokMSA_id:060962 AF432610 clone SMS9.124WL prokMSA_id:056686 AF432611 clone SMS9.35WL prokMSA_id:074958 AF432613 clone N11.128WL prokMSA_id:075014 AF432614 clone N11.131WL prokMSA_id:074961 AF432620 clone C17.47WL prokMSA_id:076193 AF432622 clone N26.100SM prokMSA_id:076965 AF432624 clone N26.99SM prokMSA_id:089116 AF432634 clone N14.01WL prokMSA_id:088942 AF432637 clone C19.40WL prokMSA_id:088344 AF432640 clone C20.25WL prokMSA_id:088813 AF432641 clone C20.40WL prokMSA_id:089558 AF432643 clone S24.16WL prokMSA_id:061241 AF432658 clone SMW4.15WL prokMSA_id:045527 AF434967 sponge symbiont JAWS1 prokMSA_id:055324 AF545646 candidate division BD clone BDWYO4 prokMSA_id:026313 AJ232830 clone LBS11 prokMSA_id:037373 AJ244317 Riz1011 prokMSA_id:069011 AJ244327 Riz1028 prokMSA_id:019454 AJ244335 Riz1045 prokMSA_id:034682 AJ244338 Riz1048 prokMSA_id:060147 AJ347071 clone TK100 prokMSA_id:062557 AJ504571 isolate P2CN22 prokMSA_id:057320 AJ518119 clone Mul01-30 prokMSA_id:057259 AJ518234 clone Mul2P2-31 prokMSA_id:056450 AJ518447 clone Neu4P3-61 prokMSA_id:056969 AJ518597 clone Qui4P2-63 prokMSA_id:056847 AJ518758 clone Sai4P3-94 prokMSA_id:079991 AJ538050 clone CF9 prokMSA_id:095084 AJ582240 Acidothermus sp. clone AC19 prokMSA_id:094888 AJ582266 Rhodothermus sp. clone AC118 prokMSA_id:052173 AY037604 soil clone S079 prokMSA_id:021227 AY037632 soil clone S121 prokMSA_id:024973 AY037641 soil clone S135 prokMSA_id:044818 AY037667 earthworm cast clone C008 prokMSA_id:056672 AY095631 OS3.5K-19 prokMSA_id:065010 AY095845 ARCT2-48 prokMSA_id:062327 AY124385 actinobacterium clone ASa10 prokMSA_id:062324 AY124386 actinobacterium clone ASa11 prokMSA_id:062322 AY124388 actinobacterium clone ASb02 prokMSA_id:069306 AY145851 candidate division BD clone BDGEO1 prokMSA_id:080350 AY161238 clone SSADM_EE2 prokMSA_id:083624 AY214645 Gemmatimonadetes clone SL2-1-C8 prokMSA_id:085359 AY221051 clone CCM17b prokMSA_id:089012 AY289484 soil clone DS-156 prokMSA_id:095686 AY395200 clone Kolm18 2.30.2.5 DICTYOGLOMUS_GROUP 332 seqs 2.30.2.5.1 TTR.FERRIREDUCENS_SUBGROUP 7 seqs 2.30.2.5.1.001 OTU 1 seq prokMSA_id:013730 U76364 Thermoterrabacterium ferrireducens. 2.30.2.5.1.002 OTU 1 seq prokMSA_id:013729 AF050577 clone WCHA1-37. 2.30.2.5.1.003 OTU 1 seq prokMSA_id:013728 U76363 Thermoterrabacterium ferrireducens. 2.30.2.5.1.004 OTU 1 seq prokMSA_id:065649 AF507744 soil clone S180 2.30.2.5.1.005 OTU 1 seq prokMSA_id:065677 AF507711 soil clone S098 2.30.2.5.1.999 poor quality 2 seqs prokMSA_id:042531 AF244579 Carboxydothermus hydrogenoformans prokMSA_id:068576 AF486697 clone W6-38-SC1-119 2.30.2.5.2 AM.DEGENSII 1 seq 2.30.2.5.2.999 poor quality 1 seq prokMSA_id:013731 U34975 Ammonifex degensii str. KC4 DSM 10501 . 2.30.2.5.3 DGL.THERMOPHILUM_SUBGROUP 15 seqs 2.30.2.5.3.001 OTU 1 seq prokMSA_id:013737 AF027078 clone OPS145. 2.30.2.5.3.002 OTU 1 seq prokMSA_id:013736 AF027077 clone OPS61. 2.30.2.5.3.003 OTU 2 seqs prokMSA_id:013733 L39875 Dictyoglomus thermophilum str. Rt46B.1. prokMSA_id:013735 X69194 Dictyoglomus thermophilum str. H-6-12 DSM 3960 . 2.30.2.5.3.004 OTU 1 seq prokMSA_id:013732 Z14090 Dictyoglomus sp. str. Rt46-B1. 2.30.2.5.3.999 poor quality 10 seqs prokMSA_id:068483 AB081520 clone:NAB27 prokMSA_id:063137 AB081525 clone:YSb prokMSA_id:013734 AF027080 clone OPS133A. prokMSA_id:040372 AF446260 firmicute FL01F09 prokMSA_id:056881 AJ518726 clone Sai4P3-47 prokMSA_id:080307 AY193074 Dictyoglomus sp. clone OBPB55 prokMSA_id:080250 AY193078 Dictyoglomus sp. clone OBPB68 prokMSA_id:080955 AY193080 Dictyoglomus sp. clone OBPB74 prokMSA_id:080178 AY193086 Dictyoglomus sp. clone OBPB91 prokMSA_id:080512 AY193122 Dictyoglomus sp. clone OBPB83 2.30.2.5.4 ENVIRONMENTAL_CLONE_OPB9_SUBGROUP 33 seqs 2.30.2.5.4.001 OTU 2 seqs prokMSA_id:013740 AF154084 clone BPC110. prokMSA_id:025493 AF424393 green nonsulfur MERTZ_21CM_32 2.30.2.5.4.002 OTU 2 seqs prokMSA_id:013738 AF027043 clone OPB9. prokMSA_id:013739 AF027044 clone OPB34. 2.30.2.5.4.003 OTU 1 seq prokMSA_id:017280 AF323774 clone BA068 complete 2.30.2.5.4.004 OTU 1 seq prokMSA_id:018683 AB031632 green non-sulfur TIHP368-10 2.30.2.5.4.005 OTU 1 seq prokMSA_id:025356 AY037597 soil clone S070 2.30.2.5.4.006 OTU 1 seq prokMSA_id:030894 AF234134 #0319-6M15 2.30.2.5.4.007 OTU 1 seq prokMSA_id:046370 AF254390 UASB_TL84 complete 2.30.2.5.4.008 OTU 1 seq prokMSA_id:075029 AJ519641 Chlorobi clone Sh765B-TzT/AG-5 2.30.2.5.4.009 OTU 1 seq prokMSA_id:076541 AY150914 Chloroflexus sp. clone WYO20C 2.30.2.5.4.010 OTU 1 seq prokMSA_id:082558 AY221060 clone CCM2b 2.30.2.5.4.999 poor quality 21 seqs prokMSA_id:023995 AB011300 clone: MUG8 prokMSA_id:046345 AB011335 clone: TUG7 prokMSA_id:024998 AF345832 green nonsulfur isolate DGGE-band-8 prokMSA_id:048492 AF345840 green nonsulfur isolate DGGE-band-16 prokMSA_id:032466 AF345841 green nonsulfur isolate DGGE-band-17 prokMSA_id:033323 AF345843 green nonsulfur isolate DGGE-band-19 prokMSA_id:068304 AF361659 clone MN16BT2-22 prokMSA_id:020759 AF392759 clone LBG4 prokMSA_id:068961 AF392798 clone CDG5 prokMSA_id:066913 AJ306791 clone SHD-6 prokMSA_id:058346 AJ489420 clone NS-G28 prokMSA_id:057273 AJ518205 clone Mul2P1-52 prokMSA_id:056139 AJ518214 clone Mul2P1-81 prokMSA_id:057155 AJ518371 clone Neu4P1-43 prokMSA_id:057090 AJ518448 clone Neu4P3-62 prokMSA_id:018574 AY037564 soil clone S014 prokMSA_id:017731 AY037638 soil clone S130 prokMSA_id:080232 AY193071 Chloroflexi clone OBPB48 prokMSA_id:080161 AY193085 Chloroflexi clone OBPB90 prokMSA_id:084232 AY197416 clone B04R015 prokMSA_id:086897 AY283151 delta clone NS-62 2.30.2.5.5 DH.ETHENOGENES_SUBGROUP 214 seqs 2.30.2.5.5.001 OTU 1 seq prokMSA_id:013749 U62842 clone RB21. 2.30.2.5.5.002 OTU 2 seqs prokMSA_id:013748 AF005750 clone H3.93. prokMSA_id:070341 AF005750 H3.93 2.30.2.5.5.003 OTU 1 seq prokMSA_id:013747 AF005745 clone t0.6.f. 2.30.2.5.5.004 OTU 2 seqs prokMSA_id:013746 AF005748 clone H1.4.f. prokMSA_id:073071 AF005748 H1.4.f 2.30.2.5.5.005 OTU 2 seqs prokMSA_id:013744 AF005746 clone t0.8.f. prokMSA_id:074334 AF005746 t0.8.f 2.30.2.5.5.006 OTU 1 seq prokMSA_id:013743 U81649 clone vadinBA26. 2.30.2.5.5.007 OTU 1 seq prokMSA_id:013742 AF142799 clone ACE-22. 2.30.2.5.5.009 OTU 1 seq prokMSA_id:016981 AF058005 RFLP17 2.30.2.5.5.012 OTU 1 seq prokMSA_id:020089 AF333545 clone R6 2.30.2.5.5.014 OTU 48 seqs prokMSA_id:013741 AF004928 Dehalococcoides ethenogenes str. 195. prokMSA_id:074423 AF004928 Dehalococcoides ethenogenes prokMSA_id:018518 AF230641 CBDB1 prokMSA_id:019679 AF349755 DCE17 prokMSA_id:029355 AF357918 Dehalococcoides sp. FL2 prokMSA_id:031301 AF388530 Dehalococcoides sp. clone DHC-asd prokMSA_id:050281 AF388531 Dehalococcoides sp. clone DHC-bmtc prokMSA_id:018992 AF388532 Dehalococcoides sp. clone DHC-bmtp prokMSA_id:039818 AF388533 Dehalococcoides sp. clone DHC-bmtv prokMSA_id:034971 AF388534 Dehalococcoides sp. clone DHC-chd prokMSA_id:048395 AF388535 Dehalococcoides sp. clone DHC-dab prokMSA_id:031803 AF388536 Dehalococcoides sp. clone DHC-dll prokMSA_id:022470 AF388537 Dehalococcoides sp. clone DHC-kafb prokMSA_id:025968 AF388539 Dehalococcoides sp. clone DHC-kb1C prokMSA_id:031094 AF388540 Dehalococcoides sp. clone DHC-kb1P prokMSA_id:045746 AF388541 Dehalococcoides sp. clone DHC-klf prokMSA_id:026309 AF388542 Dehalococcoides sp. clone DHC-lf13 prokMSA_id:020043 AF388543 Dehalococcoides sp. clone DHC-lnz prokMSA_id:028945 AF388544 Dehalococcoides sp. clone DHC-nfdpc prokMSA_id:051878 AF388545 Dehalococcoides sp. clone DHC-nfpp prokMSA_id:025537 AF388546 Dehalococcoides sp. clone DHC-nftx prokMSA_id:027776 AF388547 Dehalococcoides sp. clone DHC-nrk prokMSA_id:045091 AF388548 Dehalococcoides sp. clone DHC-pin prokMSA_id:033280 AF388549 Dehalococcoides sp. clone DHC-plk prokMSA_id:045038 AF388550 Dehalococcoides sp. clone DHC-vic prokMSA_id:048806 AF427907 clone 4D prokMSA_id:023297 AF427908 clone 5G prokMSA_id:029714 AF427909 clone 12G prokMSA_id:041208 AF427912 clone 8a prokMSA_id:051551 AF427937 clone 5H prokMSA_id:041192 AF447150 clone TDC-S1:33 prokMSA_id:062426 AF529088 Dehalococcoides sp. clone FTLM prokMSA_id:062397 AF529119 Dehalococcoides sp. clone FTLM182 prokMSA_id:071949 AJ249262 DCEH2 prokMSA_id:059912 AY133080 Dehalococcoides sp. clone ccslm202 prokMSA_id:055484 AY133097 Dehalococcoides sp. clone ccslm5 prokMSA_id:073942 AY146779 Dehalococcoides sp. KB-1/VC prokMSA_id:073418 AY146780 Dehalococcoides sp. KB-1/PCE prokMSA_id:056507 AY146781 Dehalococcoides sp. Pinellas prokMSA_id:076593 AY165308 Dehalococcoides sp. BAV1 prokMSA_id:079443 AY185313 Dehalococcoides sp. clone ARC13 prokMSA_id:079375 AY185314 Dehalococcoides sp. clone ARC18 prokMSA_id:079207 AY185317 Dehalococcoides sp. clone ARC61 prokMSA_id:079293 AY185320 Dehalococcoides sp. clone AKS14 prokMSA_id:079135 AY185324 Dehalococcoides sp. clone AKS31 prokMSA_id:082136 AY217439 MTCE-T2 10H prokMSA_id:088839 AY323233 VS prokMSA_id:092766 AY351859 Dehalococcoides sp. clone M7B1 2.30.2.5.5.015 OTU 1 seq prokMSA_id:024666 AF424387 green nonsulfur MERTZ_2CM_250 2.30.2.5.5.016 OTU 1 seq prokMSA_id:027710 AF424388 green nonsulfur MERTZ_2CM_281 2.30.2.5.5.017 OTU 1 seq prokMSA_id:028770 AF424390 green nonsulfur MERTZ_0CM_109 2.30.2.5.5.018 OTU 1 seq prokMSA_id:031352 AF224860 clone Car147fc 2.30.2.5.5.019 OTU 1 seq prokMSA_id:031890 AF407200 clone GIF9 2.30.2.5.5.020 OTU 1 seq prokMSA_id:033361 AF424379 green nonsulfur MERTZ_2CM_4 2.30.2.5.5.021 OTU 1 seq prokMSA_id:035933 AF407195 clone GIF3 2.30.2.5.5.022 OTU 1 seq prokMSA_id:036910 AF424401 green nonsulfur MERTZ_21CM_329 2.30.2.5.5.023 OTU 1 seq prokMSA_id:041231 AF393781 DF-1 2.30.2.5.5.024 OTU 1 seq prokMSA_id:042208 AF142946 PENDANT-35 2.30.2.5.5.025 OTU 1 seq prokMSA_id:043985 AF424381 green nonsulfur MERTZ_2CM_111 2.30.2.5.5.026 OTU 1 seq prokMSA_id:049414 AF211299 green non-sulfur MT61 2.30.2.5.5.027 OTU 1 seq prokMSA_id:053827 AF407406 clone RA13C7 2.30.2.5.5.028 OTU 1 seq prokMSA_id:056484 AJ347041 clone TK30 2.30.2.5.5.029 OTU 2 seqs prokMSA_id:079846 AB094813 clone:OHKB2.39 prokMSA_id:056382 AY093456 clone MB-A2-101 2.30.2.5.5.030 OTU 1 seq prokMSA_id:063104 AY093480 clone MB-C2-127 2.30.2.5.5.031 OTU 1 seq prokMSA_id:063106 AY093479 clone MB-C2-126 2.30.2.5.5.032 OTU 1 seq prokMSA_id:063109 AY093473 clone MB-B2-113 2.30.2.5.5.033 OTU 2 seqs prokMSA_id:080588 AB094799 clone:OHKB2.8 prokMSA_id:063120 AY093464 clone MB-A2-110 2.30.2.5.5.034 OTU 1 seq prokMSA_id:063128 AY093458 clone MB-A2-103 2.30.2.5.5.035 OTU 1 seq prokMSA_id:063214 AF524013 clone FW22 2.30.2.5.5.036 OTU 1 seq prokMSA_id:063215 AF524011 clone FW21 2.30.2.5.5.037 OTU 1 seq prokMSA_id:065678 AF507709 soil clone S0145 2.30.2.5.5.038 OTU 1 seq prokMSA_id:065705 AF507680 soil clone C022 2.30.2.5.5.039 OTU 1 seq prokMSA_id:067849 AY082458 Chloroflexi clone 44a-B1-13 2.30.2.5.5.040 OTU 1 seq prokMSA_id:072735 AJ347086 clone TK98 2.30.2.5.5.041 OTU 1 seq prokMSA_id:074169 AF524015 clone FW60 2.30.2.5.5.042 OTU 1 seq prokMSA_id:074881 AJ519646 Chlorobi clone Sh765B-AG-111 2.30.2.5.5.043 OTU 1 seq prokMSA_id:074987 AY150887 candidate division OP10 clone GR25 2.30.2.5.5.044 OTU 1 seq prokMSA_id:075600 AJ519647 Chlorobi clone Sh765B-AG-130 2.30.2.5.5.045 OTU 1 seq prokMSA_id:076182 AJ519642 Chlorobi clone Sh765B-TzT-6 2.30.2.5.5.046 OTU 1 seq prokMSA_id:076237 AY164386 clone BLIB-81 2.30.2.5.5.047 OTU 1 seq prokMSA_id:076471 AY154571 earthworm cast clone c208 2.30.2.5.5.048 OTU 1 seq prokMSA_id:076559 AJ519645 Chlorobi clone Sh765B-AG-72 2.30.2.5.5.049 OTU 1 seq prokMSA_id:077052 AY154633 earthworm cast clone c288 2.30.2.5.5.050 OTU 1 seq prokMSA_id:077206 AJ519643 Chlorobi clone Sh765B-TzT-20 2.30.2.5.5.051 OTU 1 seq prokMSA_id:078594 AJ536886 clone JG30-KF-AS1 2.30.2.5.5.052 OTU 1 seq prokMSA_id:079605 AB094803 clone:OHKB2.17 2.30.2.5.5.053 OTU 1 seq prokMSA_id:079657 AB094809 clone:OHKB2.30 2.30.2.5.5.054 OTU 1 seq prokMSA_id:079727 AB094800 clone:OHKB2.9 2.30.2.5.5.055 OTU 1 seq prokMSA_id:079729 AB094807 clone:OHKB2.27 2.30.2.5.5.056 OTU 1 seq prokMSA_id:079760 AB094891 clone:OHKB7.26 2.30.2.5.5.057 OTU 1 seq prokMSA_id:079829 AB094795 clone:OHKB2.1 2.30.2.5.5.058 OTU 1 seq prokMSA_id:079848 AB094822 clone:OHKB2.71 2.30.2.5.5.059 OTU 1 seq prokMSA_id:079865 AB094812 clone:OHKB2.37 2.30.2.5.5.060 OTU 1 seq prokMSA_id:079876 AB094957 clone:OHKB16.65 2.30.2.5.5.061 OTU 1 seq prokMSA_id:079943 AB094830 clone:OHKB2.90 2.30.2.5.5.062 OTU 1 seq prokMSA_id:079987 AB094796 clone:OHKB2.2 2.30.2.5.5.063 OTU 1 seq prokMSA_id:080054 AB094814 clone:OHKB2.40 2.30.2.5.5.064 OTU 1 seq prokMSA_id:080121 AB094882 clone:OHKB7.6 2.30.2.5.5.065 OTU 1 seq prokMSA_id:080195 AB094798 clone:OHKB2.6 2.30.2.5.5.066 OTU 1 seq prokMSA_id:080252 AB094881 clone:OHKB7.2 2.30.2.5.5.067 OTU 1 seq prokMSA_id:080259 AB094808 clone:OHKB2.29 2.30.2.5.5.068 OTU 1 seq prokMSA_id:080294 AB094806 clone:OHKB2.23 2.30.2.5.5.069 OTU 1 seq prokMSA_id:080371 AB094831 clone:OHKB2.92 2.30.2.5.5.070 OTU 1 seq prokMSA_id:080434 AB094797 clone:OHKB2.5 2.30.2.5.5.071 OTU 1 seq prokMSA_id:080506 AB094829 clone:OHKB2.88 2.30.2.5.5.072 OTU 1 seq prokMSA_id:080516 AB094871 clone:OHKB6.43 2.30.2.5.5.073 OTU 1 seq prokMSA_id:080539 AB094949 clone:OHKB13.34 2.30.2.5.5.074 OTU 1 seq prokMSA_id:080566 AB094820 clone:OHKB2.67 2.30.2.5.5.075 OTU 1 seq prokMSA_id:080651 AB094905 clone:OHKB7.59 2.30.2.5.5.076 OTU 1 seq prokMSA_id:080680 AB094962 clone:OHKB16.92 2.30.2.5.5.077 OTU 1 seq prokMSA_id:080700 AB094959 clone:OHKB16.71 2.30.2.5.5.078 OTU 1 seq prokMSA_id:080709 AB094801 clone:OHKB2.14 2.30.2.5.5.079 OTU 1 seq prokMSA_id:080761 AB094825 clone:OHKB2.77 2.30.2.5.5.080 OTU 1 seq prokMSA_id:080781 AB094818 clone:OHKB2.50 2.30.2.5.5.081 OTU 1 seq prokMSA_id:080891 AB094824 clone:OHKB2.74 2.30.2.5.5.082 OTU 1 seq prokMSA_id:080925 AB094823 clone:OHKB2.73 2.30.2.5.5.083 OTU 1 seq prokMSA_id:080929 AB094950 clone:OHKB13.50 2.30.2.5.5.084 OTU 1 seq prokMSA_id:080949 AB094865 clone:OHKB6.5 2.30.2.5.5.085 OTU 1 seq prokMSA_id:080965 AB094828 clone:OHKB2.87 2.30.2.5.5.086 OTU 1 seq prokMSA_id:082007 AY218649 clone KD4-96 2.30.2.5.5.087 OTU 1 seq prokMSA_id:082039 AY217417 MTCE-T2 4A 2.30.2.5.5.088 OTU 1 seq prokMSA_id:083085 AY250894 clone TLT128 2.30.2.5.5.089 OTU 1 seq prokMSA_id:084030 AY226253 clone BBBB-5 2.30.2.5.5.090 OTU 1 seq prokMSA_id:084301 AJ495646 isolate SA-51 2.30.2.5.5.091 OTU 1 seq prokMSA_id:084827 AY280648 clone G3-11 2.30.2.5.5.092 OTU 1 seq prokMSA_id:088151 AY191351 Chloroflexi isolate ODP1176A6H_1_B 2.30.2.5.5.093 OTU 1 seq prokMSA_id:088251 AY191327 Chloroflexi isolate ODP1176A1H3z_11_B 2.30.2.5.5.094 OTU 1 seq prokMSA_id:088297 AY191325 Chloroflexi isolate ODP1176A11H_17_B 2.30.2.5.5.095 OTU 1 seq prokMSA_id:088342 AY289463 soil clone ABS-705 2.30.2.5.5.096 OTU 1 seq prokMSA_id:088485 AY191356 Chloroflexi isolate ODP1176A6H_5_B 2.30.2.5.5.097 OTU 1 seq prokMSA_id:088604 AF523033 2.30.2.5.5.098 OTU 1 seq prokMSA_id:089261 AY191335 Chloroflexi isolate ODP1176A1H3z_8_B 2.30.2.5.5.099 OTU 1 seq prokMSA_id:090124 AY191331 Chloroflexi isolate ODP1176A1H3z_2_B 2.30.2.5.5.100 OTU 1 seq prokMSA_id:090486 AY191326 Chloroflexi isolate ODP1176A11H_26_B 2.30.2.5.5.101 OTU 1 seq prokMSA_id:090752 AY191333 Chloroflexi isolate ODP1176A1H3z_6_B 2.30.2.5.5.999 poor quality 65 seqs prokMSA_id:022767 AF078451 Grassland soil clone sl3_822 prokMSA_id:021715 AF104282 124 prokMSA_id:069646 AF128642 soil S0145 prokMSA_id:017945 AF145846 Metal-contaminated soil clone K20-51 prokMSA_id:035544 AF186452 sponge symbiont PAWS67 prokMSA_id:024161 AF295747 isolate RFLP 287 prokMSA_id:021693 AF298520 Seq3Z1 prokMSA_id:049726 AF298522 Seq5Z1 prokMSA_id:017629 AF298523 Seq6Z1 prokMSA_id:074619 AF298524 Seq7S3 prokMSA_id:032303 AF298525 Seq8S3 prokMSA_id:019325 AF298526 Seq9S4 prokMSA_id:047156 AF298528 Seq11S4 prokMSA_id:039442 AF298529 Seq12S4 prokMSA_id:020626 AF298530 Seq13S5 prokMSA_id:068032 AF365719 clone BT60DS1BH6 prokMSA_id:029720 AF427911 clone 2A prokMSA_id:036771 AF427936 clone 12C prokMSA_id:061245 AF432653 clone NMW3.214WL prokMSA_id:061220 AF432680 clone SMS9.102WL prokMSA_id:061221 AF432681 clone SMS9.104WL prokMSA_id:061218 AF432683 clone SMS9.117WL prokMSA_id:061211 AF432689 clone SMS9.31WL prokMSA_id:061206 AF432697 clone SMS9.95WL prokMSA_id:075118 AF432746 clone C31.23SM prokMSA_id:075194 AF432751 clone C32.03SM prokMSA_id:075364 AF432823 clone S39.44SM prokMSA_id:063213 AF524012 clone FW64 prokMSA_id:062430 AF529087 Dehalococcoides sp. clone FTLpre prokMSA_id:062424 AF529089 Dehalococcoides sp. clone FTLpost prokMSA_id:061841 AF529316 Dehalococcoides sp. clone CL2S2 prokMSA_id:061840 AF529317 Dehalococcoides sp. clone 2I1 prokMSA_id:043223 AJ290980 SHE-134 prokMSA_id:029892 AJ290981 SHE-135 prokMSA_id:052029 AJ290982 SHE-136 prokMSA_id:035766 AJ290984 SHE-138 prokMSA_id:070460 AJ305057 38-3 prokMSA_id:072698 AJ305058 38-4 prokMSA_id:072612 AJ305062 38-2 prokMSA_id:060171 AJ347037 clone TK18 prokMSA_id:060159 AJ347055 clone TK10 prokMSA_id:074209 AJ347079 clone TK74 prokMSA_id:050732 AJ437417 clone 1_34_120 prokMSA_id:051965 AJ437425 clone 1_34_224 prokMSA_id:056671 AJ489411 clone NS-X24 prokMSA_id:058370 AJ489418 clone NS-D24 prokMSA_id:057239 AJ518248 clone Mul2P2-52 prokMSA_id:057236 AJ518265 clone Mul2P2-84 prokMSA_id:057204 AJ518302 clone Mul2P3-82 prokMSA_id:057162 AJ518362 clone Neu4P1-23 prokMSA_id:057102 AJ518435 clone Neu4P3-42 prokMSA_id:057092 AJ518446 clone Neu4P3-60 prokMSA_id:057091 AJ518449 clone Neu4P3-63 prokMSA_id:088705 AJ577306 clone 46 prokMSA_id:047673 AY037754 earthworm cast clone C152 prokMSA_id:059888 AY133109 Dehalococcoides sp. clone CCSpre prokMSA_id:059887 AY133110 Dehalococcoides sp. clone CCSLM prokMSA_id:059886 AY133111 Dehalococcoides sp. clone CCSpost prokMSA_id:075822 AY154623 earthworm cast clone c273 prokMSA_id:081570 AY217416 MTCE-T2 3A prokMSA_id:085465 AY226222 clone ABBB-73 prokMSA_id:087886 AY261423 clone RFLP U117 prokMSA_id:087422 AY283124 low G+C Gram-positive clone NS-39 prokMSA_id:087191 AY283125 low G+C Gram-positive clone NS-56 prokMSA_id:013745 Z69320 str. s16. 2.30.2.5.6 ENVIRONMENTAL_CLONE_SAR202_SUBGROUP 62 seqs 2.30.2.5.6.001 OTU 2 seqs prokMSA_id:013754 AF005747 clone H1.2.f. prokMSA_id:074429 AF005747 H1.2.f 2.30.2.5.6.002 OTU 1 seq prokMSA_id:013753 U20797 Sargasso Sea Bermuda Atlantic Time-Series Study clone SAR 202. 2.30.2.5.6.003 OTU 1 seq prokMSA_id:013752 AF186417 clone WS52f. 2.30.2.5.6.004 OTU 1 seq prokMSA_id:013750 U20798 Sargasso Sea Bermuda Atlantic Time-Series Study clone SAR 307. 2.30.2.5.6.005 OTU 1 seq prokMSA_id:019169 AF333544 clone R43 2.30.2.5.6.006 OTU 2 seqs prokMSA_id:020758 AF355053 Chloroflexaceae group Arctic96BD-6 prokMSA_id:065022 AY095831 Chloroflexales ARCT2-17 2.30.2.5.6.007 OTU 1 seq prokMSA_id:021495 AF355054 Chloroflexaceae group Arctic95A-18 2.30.2.5.6.008 OTU 1 seq prokMSA_id:023743 AF333547 clone R177 2.30.2.5.6.009 OTU 2 seqs prokMSA_id:027223 AF440722 Chloroflexi ARCT1-50 prokMSA_id:027000 AF440725 marine ARCT1-55 2.30.2.5.6.010 OTU 1 seq prokMSA_id:030149 U86461 marine pN1-52 2.30.2.5.6.011 OTU 1 seq prokMSA_id:031608 AF333546 clone R98 2.30.2.5.6.012 OTU 1 seq prokMSA_id:043615 AF142817 ACE-42 2.30.2.5.6.013 OTU 1 seq prokMSA_id:044260 AF316763 Crater Lake CL500-9 2.30.2.5.6.014 OTU 1 seq prokMSA_id:060148 AJ347074 clone TK106 2.30.2.5.6.015 OTU 1 seq prokMSA_id:060636 AF406538 green nonsulfur clone AEGEAN_116 2.30.2.5.6.016 OTU 1 seq prokMSA_id:065684 AF507700 soil clone C083 2.30.2.5.6.017 OTU 1 seq prokMSA_id:065691 AF507693 soil clone S085 2.30.2.5.6.018 OTU 1 seq prokMSA_id:069005 AF316764 Crater Lake CL500-10 2.30.2.5.6.019 OTU 1 seq prokMSA_id:074658 AF529110 Chloroflexi clone FTL276 2.30.2.5.6.020 OTU 1 seq prokMSA_id:078515 AJ536892 clone JG30-KF-CM66 2.30.2.5.6.021 OTU 1 seq prokMSA_id:083381 AY226250 clone BBBB-46 2.30.2.5.6.022 OTU 1 seq prokMSA_id:085433 AY226219 clone ABBB-68 2.30.2.5.6.023 OTU 1 seq prokMSA_id:086168 AY226335 clone UBBB-57 2.30.2.5.6.024 OTU 3 seqs prokMSA_id:088795 AJ567610 green non-sulfur clone MBAE69 prokMSA_id:088632 AJ567611 green non-sulfur clone MBAE70 prokMSA_id:089943 AJ567614 green non-sulfur clone MBAE74 2.30.2.5.6.025 OTU 1 seq prokMSA_id:088715 AJ567609 green non-sulfur clone MBAE68 2.30.2.5.6.026 OTU 2 seqs prokMSA_id:090127 AJ567543 green non-sulfur clone MBMPE25 prokMSA_id:089404 AJ567560 green non-sulfur clone MBMPE46 2.30.2.5.6.027 OTU 1 seq prokMSA_id:090508 AJ567556 green non-sulfur clone MBMPE42 2.30.2.5.6.999 poor quality 29 seqs prokMSA_id:033194 AF128641 soil C083 prokMSA_id:018125 AF186450 sponge symbiont PAWS63 prokMSA_id:039564 AF186457 sponge symbiont PAWS74 prokMSA_id:019743 AF320964 Lake Michigan sediment LMBA51 prokMSA_id:068857 AF332291 clone T26-4 prokMSA_id:044891 AF332294 clone T26-7 prokMSA_id:068855 AF332305 clone T26-2 prokMSA_id:068854 AF332313 clone T26-3 prokMSA_id:055605 AF332316 clone T26-5 prokMSA_id:048608 AF332323 clone T26-6 prokMSA_id:068853 AF332325 clone C26-5 prokMSA_id:038703 AF332332 clone C26-6 prokMSA_id:040906 AF332333 clone C26-7 prokMSA_id:027198 AF332339 clone C26-3 prokMSA_id:068852 AF332351 clone C26-2 prokMSA_id:020409 AF332353 clone C26-4 prokMSA_id:023646 AF434974 sponge symbiont JAWS18 prokMSA_id:026822 AF434979 sponge symbiont JAWS3 prokMSA_id:038744 AF434981 sponge symbiont JAWS4 prokMSA_id:058789 AF540056 DGGE gel band ESR BR 21 prokMSA_id:070491 AJ347033 clone TK04 prokMSA_id:060172 AJ347036 clone TK17 prokMSA_id:071609 AJ347080 clone TK77 prokMSA_id:060131 AJ347084 clone TK93 prokMSA_id:035122 AJ421911 clone Alt9-K96 prokMSA_id:065021 AY095830 Chloroflexales ARCT2-16 prokMSA_id:082472 AY221034 clone CCD20 prokMSA_id:051131 U21682 clone SAR263 from Sargasso Sea prokMSA_id:013751 Z77416 str. 1-420 C46. 2.30.2.6 THERMOANAEROBACTER_GROUP 158 seqs 2.30.2.6.1 TBM.THERMOSULFURIGENES_SUBGROUP 32 seqs 2.30.2.6.1.006 OTU 1 seq prokMSA_id:013759 U40229 unnamed organism. 2.30.2.6.1.007 OTU 1 seq prokMSA_id:013758 U75993 str. mel2. 2.30.2.6.1.010 OTU 1 seq prokMSA_id:059208 AY140670 Thermoanaerobacterium bryantii 2.30.2.6.1.012 OTU 14 seqs prokMSA_id:027592 AF247003 Thermoanaerobacterium thermosaccharolyticum strain D120-70 complete prokMSA_id:036399 AF280823 tbr1-8 prokMSA_id:036077 AF280836 tbr4-78 prokMSA_id:079500 AY179752 Thermoanaerobacterium sp. clone OTU-C2 prokMSA_id:079452 AY179754 Thermoanaerobacterium sp. clone OTU-C9 prokMSA_id:079371 AY185511 Thermoanaerobacterium sp. clone OTU-S27 prokMSA_id:079167 AY185512 Thermoanaerobacterium sp. clone OTU-S3 prokMSA_id:079446 AY185513 Thermoanaerobacterium sp. clone OTU-S30 prokMSA_id:079220 AY185515 Thermoanaerobacterium sp. clone OTU-S7 prokMSA_id:013761 L09169 Thermoanaerobacterium saccharolyticum str. B6A-RI; B6A DSM 7060 prokMSA_id:013760 L09170 Thermoanaerobium "lactoethylicum" str. ZE-1 DSM 9003. prokMSA_id:013757 L09171 Thermoanaerobacterium thermosulfurigenes str. 4B ATCC 33743 . prokMSA_id:013762 X76743 Clostridium thermoamylolyticum DSM 2335. prokMSA_id:013763 X93359 Thermoanaerobacterium aotearoense str. JW/SL-NZ613 . 2.30.2.6.1.013 OTU 1 seq prokMSA_id:092845 AY350594 Thermoanaerobacterium sp. 761-119 2.30.2.6.1.999 poor quality 14 seqs prokMSA_id:073859 AB059411 Thermoanaerobacterium thermosaccharolyticum prokMSA_id:050708 AB059473 Thermoanaerobacterium sp. C-1 prokMSA_id:050609 AB059474 Clostridium sp. C-4 prokMSA_id:025011 AB059476 Thermoanaerobacterium sp. C38-4 prokMSA_id:030381 AB059478 Desulfotomaculum sp. C40-3 prokMSA_id:046346 AB059479 Clostridium sp. C41-3 prokMSA_id:040920 AJ400507 clone Hb1-K86 prokMSA_id:028394 AJ400549 clone Hb3-K8 prokMSA_id:063892 AJ493386 clone m6-1 prokMSA_id:079489 AY185509 Thermoanaerobacterium sp. clone OTU-S13 prokMSA_id:079169 AY185514 Thermoanaerobacterium sp. clone OTU-S6 prokMSA_id:013755 L09172 Thermoanaerobacterium xylanolyticum str. LX-II DSM 7097 . prokMSA_id:013764 M59119 Thermoanaerobacterium thermosaccharolyticum ATCC 7956 . prokMSA_id:013756 X58351 Thermoanaerobacterium thermosulfurigenes str. 4B . 2.30.2.6.2 THERMOANAEROBACTER.KIVUI 6 seqs 2.30.2.6.2.001 OTU 1 seq prokMSA_id:013765 L09160 Thermoanaerobacter kivui DSM 2030 . 2.30.2.6.2.002 OTU 1 seq prokMSA_id:034323 Y18182 Clostridium uzonii strain DSM 9752 2.30.2.6.2.003 OTU 1 seq prokMSA_id:066678 AE013109 Thermoanaerobacter tengcongensis strain MB4T section 136 of 244 of the complete genome 2.30.2.6.2.999 poor quality 3 seqs prokMSA_id:017587 AF325230 isolate P-132 prokMSA_id:046416 AF325231 isolate P-36 prokMSA_id:016572 AF325234 isolate P-4 2.30.2.6.3 TAB.ETHANOLICUS_SUBGROUP 33 seqs 2.30.2.6.3.001 OTU 9 seqs prokMSA_id:013775 AJ133616 clone KTK 27. prokMSA_id:013776 AJ133619 clone KTK 41. prokMSA_id:040722 AJ347769 KB1 group clone ST-12K35 prokMSA_id:042260 AJ347770 KB1 group clone ST-3K6 prokMSA_id:022143 AJ347771 KB1 group clone ST-3K7 prokMSA_id:032158 AJ347772 KB1 group clone ST-3K22 prokMSA_id:032063 AJ347773 KB1 group clone ST-12K21 prokMSA_id:077050 AY164346 clone ALIB-37 prokMSA_id:086494 AY226197 KB1 group clone ABBB-20 2.30.2.6.3.002 OTU 2 seqs prokMSA_id:013774 L09161 Thermoanaerobacter thermohydrosulfuricus str. E100-69 DSM 567 . prokMSA_id:013773 L23477 Clostridium sp. str. AZ3 B.1. 2.30.2.6.3.003 OTU 3 seqs prokMSA_id:013772 L09162 Thermoanaerobacter ethanolicus str. JW200 ATCC 31550. prokMSA_id:013770 L09163 Thermoanaerobacter acetoethylicus str. HTB2/W ATCC 33265 . prokMSA_id:013769 X69336 Thermoanaerobacter acetoethylicus str. HTB2/W ATCC 33265 . 2.30.2.6.3.004 OTU 3 seqs prokMSA_id:013767 U51198 Thermoanaerobacter sp. str. AB11 Ad. prokMSA_id:013766 X92513 Thermoanaerobacter wiegelii str. Rt8.B1. prokMSA_id:013768 Y16940 Thermoanaerobacter sulfurophilus str. L-64 DSM 11584 . 2.30.2.6.3.005 OTU 1 seq prokMSA_id:029733 AF234164 Thermoanaerobacter sulfurigignens 2.30.2.6.3.006 OTU 2 seqs prokMSA_id:033710 AF120479 Thermoanaerobacter siderophilus prokMSA_id:092361 AY350590 Thermoanaerobacter sp. clone 711-12 2.30.2.6.3.007 OTU 1 seq prokMSA_id:034225 AJ133620 'KTK 42' 2.30.2.6.3.008 OTU 1 seq prokMSA_id:071844 AJ306759 clone SHA-102 2.30.2.6.3.009 OTU 2 seqs prokMSA_id:074905 AY164347 clone ALIB-4 prokMSA_id:085282 AY226286 KB1 group clone DBBB-30 2.30.2.6.3.010 OTU 1 seq prokMSA_id:093070 AY350591 Thermoanaerobacter sp. clone 711-b25 2.30.2.6.3.999 poor quality 8 seqs prokMSA_id:073004 AF220346 str. vp188 prokMSA_id:031231 AF332270 clone C12-1 prokMSA_id:084622 AY226317 KB1 group clone DBBB-89 prokMSA_id:086147 AY226339 KB1 group clone UBBB-80 prokMSA_id:092691 AY350592 Thermoanaerobacter sp. 518-21 prokMSA_id:092239 AY350593 Thermoanaerobacter sp. 711-75 prokMSA_id:013777 NONE Thermoanaerobacter thermohydrosulfuricus str. E100-69 ATCC 35045 prokMSA_id:013771 X58347 Thermoanaerobacter ethanolicus str. JW200 . 2.30.2.6.4 TAB.THERMOCOPRIAE_SUBGROUP 39 seqs 2.30.2.6.4.001 OTU 7 seqs prokMSA_id:013782 AF068784 VC2.1 Bac2 complete prokMSA_id:013783 AF068785 clone VC2.1 Bac3. prokMSA_id:013784 AF068787 VC2.1 Bac5 complete prokMSA_id:013785 AF068793 VC2.1 Bac13 complete prokMSA_id:013786 AF068799 clone VC2.1 Bac23. prokMSA_id:013788 AF068808 VC2.1 Bac34 complete prokMSA_id:085051 AJ507320 Desulfurobacterium crinifex strain NE 1206 2.30.2.6.4.002 OTU 1 seq prokMSA_id:013787 AF068800 VC2.1 Bac24 complete 2.30.2.6.4.003 OTU 1 seq prokMSA_id:013781 Y11279 Thermoanaerobacter mathranii str. A3 DSM 11426 . 2.30.2.6.4.004 OTU 2 seqs prokMSA_id:013780 L09167 Thermoanaerobacter thermocopriae str. JT-3 IAM 13577 . prokMSA_id:013778 L09167 Thermoanaerobacter thermocopriae str. JT-3 IAM 13577 . 2.30.2.6.4.005 OTU 1 seq prokMSA_id:013779 AF068811 VC2.1 Bac48 complete 2.30.2.6.4.006 OTU 1 seq prokMSA_id:026307 AJ132736 CHA3-27 clone CHA3-27 2.30.2.6.4.007 OTU 1 seq prokMSA_id:028514 AJ132734 CHA3-125 clone CHA3-125 2.30.2.6.4.008 OTU 1 seq prokMSA_id:039086 AJ132733 CHA3-117 clone CHA3-117 2.30.2.6.4.009 OTU 1 seq prokMSA_id:049867 AF469394 clone 33-PA42B99 2.30.2.6.4.010 OTU 1 seq prokMSA_id:083837 AY263403 Thermovibrio ammonificans strain HB-1 2.30.2.6.4.011 OTU 1 seq prokMSA_id:088538 AY311393 Thermovibrio sp. HB-4 2.30.2.6.4.012 OTU 1 seq prokMSA_id:089121 AY311392 Thermovibrio sp. HB-2 2.30.2.6.4.013 OTU 1 seq prokMSA_id:089562 AB113166 Aquificales clone:pCIRB-E 2.30.2.6.4.014 OTU 1 seq prokMSA_id:089663 AB113183 Aquificales clone:pCIRB-70 2.30.2.6.4.999 poor quality 18 seqs prokMSA_id:020275 AB079476 clone:TOYO-15-Bm prokMSA_id:082697 AB096623 clone: SUIYO-E10 prokMSA_id:040925 AF459049 E5-46-SC1-121 prokMSA_id:044473 AF459051 E5-46-SC1-123 prokMSA_id:046821 AF459055 E5-46-SC1-127 prokMSA_id:026991 AF459062 E5-46-SC1-134 prokMSA_id:038527 AF459064 E5-46-SC1-136 prokMSA_id:026678 AF459069 E5-46-SC1-141 prokMSA_id:046887 AF459070 E5-46-SC1-142 prokMSA_id:040832 AF459071 E5-46-SC1-143 prokMSA_id:020174 AF459074 E5-46-SC1-146 prokMSA_id:057823 AF546971 clone E5-46-BH1-2/2/99-074 prokMSA_id:057816 AF546979 clone E5-46-BH1-2/2/99-082 prokMSA_id:057814 AF546982 clone E5-46-BH1-2/2/99-085 prokMSA_id:057796 AF546991 clone E5-46-BH1-2/2/99-094 prokMSA_id:071213 AJ132735 CHA3-131 clone CHA3-131 prokMSA_id:038062 AJ250846 Thermoanaerobacter italicus strain DSM 9252 prokMSA_id:071677 AY033493 Thermovenabulum ferriphilus 2.30.2.6.5 TAB.BROCKII_SUBGROUP 48 seqs 2.30.2.6.5.001 OTU 1 seq prokMSA_id:013793 U14330 Thermoanaerobacter brockii subsp. lactiethylicus DSM 9801 . 2.30.2.6.5.002 OTU 8 seqs prokMSA_id:059096 AF542517 Thermoanaerobacter ethanolicus strain X514 prokMSA_id:059097 AF542518 Thermoanaerobacter ethanolicus strain X561 prokMSA_id:059095 AF542519 Thermoanaerobacter ethanolicus strain X521 prokMSA_id:059094 AF542520 Thermoanaerobacter ethanolicus strain X513 prokMSA_id:059098 AF542521 Thermoanaerobacter ethanolicus strain X524 prokMSA_id:013789 L09164 Thermoanaerobacter ethanolicus str. 39E ATCC 33223. prokMSA_id:013790 L09165 Thermoanaerobacter brockii str. HTD4 DSM 1457 . prokMSA_id:013792 L09166 Thermoanaerobacter brockii subsp. finnii str. AKo-1 DSM 3389 . 2.30.2.6.5.004 OTU 1 seq prokMSA_id:020103 AF325224 isolate P-3 2.30.2.6.5.010 OTU 13 seqs prokMSA_id:066681 AE012979 Thermoanaerobacter tengcongensis strain MB4T section 6 of 244 of the complete genome prokMSA_id:066680 AE012982 Thermoanaerobacter tengcongensis strain MB4T section 9 of 244 of the complete genome prokMSA_id:066677 AE013169 Thermoanaerobacter tengcongensis strain MB4T section 196 of 244 of the complete genome prokMSA_id:039044 AF174484 Carboxydobrachium pacificus prokMSA_id:016510 AF209708 Thermoanaerobacter tengcongensis prokMSA_id:026976 AF212925 Thermoanaerobacter yonseii prokMSA_id:016675 AF220304 o18b3 prokMSA_id:034305 AF220311 O11E1 prokMSA_id:043460 AF220317 O14B12 prokMSA_id:071328 AF220322 O14E7 prokMSA_id:085134 AY216596 Thermoanaerobacter subterraneus strain OCA1 prokMSA_id:085550 AY216597 Thermoanaerobacter subterraneus strain SL9 prokMSA_id:087364 AY278483 Thermoanaerobacter keratinophilus strain 2KXI 2.30.2.6.5.011 OTU 1 seq prokMSA_id:050612 AF195797 Thermoanaerobacter subterraneus 2.30.2.6.5.012 OTU 1 seq prokMSA_id:067033 AJ306758 clone SHA-98 2.30.2.6.5.013 OTU 1 seq prokMSA_id:070136 AF220318 O14C2 2.30.2.6.5.999 poor quality 22 seqs prokMSA_id:052467 AF325225 isolate A-35 prokMSA_id:047255 AF325226 isolate P-2 prokMSA_id:041963 AF325227 isolate P-26 prokMSA_id:051266 AF325228 isolate A-55 prokMSA_id:026385 AF325229 isolate A-100 prokMSA_id:074617 AF325232 isolate P-1 prokMSA_id:029898 AF325233 isolate A-15 prokMSA_id:043138 AF325235 isolate P-47 prokMSA_id:024952 AF325236 isolate P-5 prokMSA_id:028273 AF325238 isolate H-12 prokMSA_id:046746 AF325239 isolate H-22 prokMSA_id:041099 AF325240 isolate A-40 prokMSA_id:032251 AF325241 isolate H-92 prokMSA_id:045356 AF325242 isolate H-52 prokMSA_id:021933 AF325243 isolate A-112 prokMSA_id:032052 AF325244 isolate H-112 prokMSA_id:062674 AF507884 low G+C Gram-positive clone ML623J-26 prokMSA_id:087991 AY280871 Thermoanaerobacter sp. K67 prokMSA_id:013791 NONE str. from Siljan ring drill ~3 km down. prokMSA_id:013795 X58348 Thermoanaerobacter acetoethylicus str. HTB2/W . prokMSA_id:013796 X58349 Thermoanaerobacter brockii str. HTD4 . prokMSA_id:013794 X58350 Thermoanaerobacter ethanolicus str. 39E ATCC 33223. 2.30.3 SPOROMUSA_AND_RELATIVES 827 seqs 2.30.3.1 SPOROMUSA_GROUP 540 seqs 2.30.3.1.1 SLN.RUMINA_SUBGROUP 199 seqs 2.30.3.1.1.001 OTU 2 seqs prokMSA_id:037190 AF373027 Pectinatus frisingensis prokMSA_id:013818 NONE Pectinatus cerevisiiphilus ATCC 29359 . 2.30.3.1.1.002 OTU 2 seqs prokMSA_id:036295 AF373025 Zymophilus paucivorans prokMSA_id:013817 NONE Zymophilus paucivorans str. SH2 DSM 20756 . 2.30.3.1.1.004 OTU 2 seqs prokMSA_id:013815 AB009216 clone RFN69. prokMSA_id:038984 AB034191 Anaerovibrio lipolytica 2.30.3.1.1.008 OTU 1 seq prokMSA_id:013807 AF018567 clone 30-20. 2.30.3.1.1.009 OTU 1 seq prokMSA_id:013804 AF001737 clone RF4. 2.30.3.1.1.010 OTU 3 seqs prokMSA_id:088706 AB113712 clone:OAB24 prokMSA_id:088101 AB113729 clone:OAB43 prokMSA_id:013803 Y09434 Schwartzia succinivorans str. S1-1 DSM 10502 . 2.30.3.1.1.011 OTU 2 seqs prokMSA_id:024490 AF373024 Selenomonas lacticifex prokMSA_id:013802 NONE Selenomonas lacticifex str. VB4b DSM 20757 . 2.30.3.1.1.017 OTU 1 seq prokMSA_id:017375 AB034138 rumen 4C28d-14 2.30.3.1.1.018 OTU 1 seq prokMSA_id:059529 AF538861 Selenomonas sp. oral clone P4PA_36 P2 2.30.3.1.1.019 OTU 1 seq prokMSA_id:021285 AF287791 Selenomonas-like sp. oral clone CS015 2.30.3.1.1.020 OTU 1 seq prokMSA_id:021823 AF371704 clone p-2858-6C5 2.30.3.1.1.022 OTU 1 seq prokMSA_id:022425 AF287796 Selenomonas sp. oral clone CS024 2.30.3.1.1.024 OTU 5 seqs prokMSA_id:043268 AF287789 Selenomonas-like sp. oral strain GAA14 prokMSA_id:023591 AF287790 Selenomonas-like sp. oral clone DM071 prokMSA_id:051787 AF385502 Selenomonas sp. oral clone EW079 prokMSA_id:087223 AY278628 Selenomonas genomosp. C2 prokMSA_id:092443 AY349410 Selenomonas sp. oral clone JS031 2.30.3.1.1.025 OTU 4 seqs prokMSA_id:031775 AB034078 rumen 3C3d-9 prokMSA_id:051519 AB034079 rumen 3C3d-10 prokMSA_id:024283 AB034081 rumen 3C3d-5 prokMSA_id:046245 AB034137 rumen 4C28d-3 2.30.3.1.1.026 OTU 5 seqs prokMSA_id:036002 AF201987 human oral A38 prokMSA_id:025406 AF201988 human oral A39 prokMSA_id:071192 AF287798 Selenomonas noxia-like sp. oral clone CI002 prokMSA_id:040840 AF287799 Selenomonas noxia prokMSA_id:072188 AF385495 Selenomonas sp. oral clone EQ054 2.30.3.1.1.027 OTU 1 seq prokMSA_id:027326 AB034132 rumen 3C28d-7 2.30.3.1.1.028 OTU 1 seq prokMSA_id:056293 AF538860 Schwartzia sp. oral clone P2PC_32 P2 2.30.3.1.1.029 OTU 1 seq prokMSA_id:028118 AF287804 Selenomonas flueggei-like sp. clone AH132 2.30.3.1.1.032 OTU 1 seq prokMSA_id:029056 AF385503 Selenomonas sp. oral clone EW084 2.30.3.1.1.033 OTU 1 seq prokMSA_id:029533 Y18190 Propionispira arboris strain DSM 2179 2.30.3.1.1.038 OTU 1 seq prokMSA_id:031620 AF287792 Selenomonas-like sp. oral strain FNA3 2.30.3.1.1.039 OTU 7 seqs prokMSA_id:072672 AF201986 human oral A37 prokMSA_id:031951 AF287793 Selenomonas sputigena prokMSA_id:052640 AF287794 Selenomonas sp. oral clone DD020 prokMSA_id:017310 AF373023 Selenomonas sputingena prokMSA_id:022780 AF385497 Selenomonas sp. oral clone EW051a prokMSA_id:073837 AJ289175 E1-K17 prokMSA_id:013809 NONE Selenomonas sputigena ATCC 35185 . 2.30.3.1.1.040 OTU 1 seq prokMSA_id:032169 AB034082 rumen 4C3d-9 2.30.3.1.1.041 OTU 1 seq prokMSA_id:033071 AF366273 Selenomonas sp. clone DS051 2.30.3.1.1.044 OTU 6 seqs prokMSA_id:022408 AB034129 rumen 3C28d-2 prokMSA_id:041385 AB034130 rumen 3C28d-9 prokMSA_id:038382 AB034131 rumen 3C28d-11 prokMSA_id:034271 AB034133 rumen 4C28d-5 prokMSA_id:042912 AB034134 rumen 4C28d-6 prokMSA_id:031161 AF371698 clone p-2400-55G5 2.30.3.1.1.045 OTU 1 seq prokMSA_id:034987 AF371701 clone p-2365-55G5 2.30.3.1.1.046 OTU 2 seqs prokMSA_id:035331 AF371697 clone p-2403-55G5 prokMSA_id:041482 AF479674 Mitsuokella jalaludinii strain M9 complete 2.30.3.1.1.047 OTU 3 seqs prokMSA_id:036536 AF371702 clone p-365-a3 prokMSA_id:072926 AF371703 clone p-73-a5 prokMSA_id:039457 AJ241722 microorganism clone Cal18 2.30.3.1.1.048 OTU 1 seq prokMSA_id:037768 AJ420107 Megamonas hypermegale strain DSM 1672T 2.30.3.1.1.049 OTU 1 seq prokMSA_id:039572 AF458222 Centipeda periodontii strain HB-2 2.30.3.1.1.050 OTU 1 seq prokMSA_id:039975 AF366274 Selenomonas sp. clone DS071 2.30.3.1.1.051 OTU 1 seq prokMSA_id:041729 AF371699 clone p-4726-2Wb2 2.30.3.1.1.053 OTU 8 seqs prokMSA_id:016970 AF287800 Selenomonas sp. oral clone AJ036 prokMSA_id:042483 AF287802 Selenomonas infelix prokMSA_id:070073 AF385492 Selenomonas sp. oral clone DY027 prokMSA_id:071930 AF385493 sp. oral clone DZ073 prokMSA_id:070887 AF385501 Selenomonas sp. oral clone EW076 prokMSA_id:072580 AF385576 Selenomonas sp. oral clone EY047 prokMSA_id:092541 AY349405 Selenomonas sp. oral clone GT010 prokMSA_id:092124 AY349407 Selenomonas sp. oral clone IK004 2.30.3.1.1.054 OTU 1 seq prokMSA_id:042552 AF385578 Selenomonas sp. oral clone EZ011 2.30.3.1.1.056 OTU 4 seqs prokMSA_id:043296 AB034083 rumen 6C3d-30 prokMSA_id:031559 AB034084 rumen 6C3d-34 prokMSA_id:089406 AB113707 clone:OAB20 prokMSA_id:089697 AB113718 clone:OAB31 2.30.3.1.1.057 OTU 2 seqs prokMSA_id:045515 AB034051 rumen 5C0d-24 prokMSA_id:048795 AB034135 rumen 4C28d-2 2.30.3.1.1.058 OTU 1 seq prokMSA_id:070619 AF287797 Selenomonas sp. oral clone AA024 2.30.3.1.1.059 OTU 1 seq prokMSA_id:051109 AB034140 rumen 2C28d-11 2.30.3.1.1.060 OTU 1 seq prokMSA_id:054146 AY013649 Banisveld landfill BVB22 2.30.3.1.1.061 OTU 1 seq prokMSA_id:063201 AF524026 clone FW17 2.30.3.1.1.062 OTU 1 seq prokMSA_id:069175 AF530374 clone cadhufec43c10 2.30.3.1.1.063 OTU 2 seqs prokMSA_id:071745 AF385514 Selenomonas sp. oral clone DO042 prokMSA_id:092034 AY349404 Selenomonas sp. oral clone GI064 2.30.3.1.1.064 OTU 1 seq prokMSA_id:072198 AF357557 mpn-isolate group 9 2.30.3.1.1.065 OTU 2 seqs prokMSA_id:074175 AF287795 Selenomonas sp. oral clone CS002 prokMSA_id:086707 AY278627 Selenomonas genomosp. C1 2.30.3.1.1.066 OTU 1 seq prokMSA_id:083279 AY207052 Selenomonas sp. oral clone P2PA_80 P4 2.30.3.1.1.067 OTU 1 seq prokMSA_id:085199 AY244883 rumen clone BF5 2.30.3.1.1.068 OTU 1 seq prokMSA_id:085751 AY244971 rumen clone BS17 2.30.3.1.1.070 OTU 16 seqs prokMSA_id:013812 AB003379 Selenomonas ruminantium subsp. lactilytica JCM 6582 . prokMSA_id:013814 AB009188 clone RFN3. prokMSA_id:013816 AB017195 Selenomonas ruminantium str. S20. prokMSA_id:033404 AB034031 rumen 4C0d-18 prokMSA_id:089944 AB113706 clone:OAB19 prokMSA_id:013813 AF001774 clone RFP7. prokMSA_id:013799 AF161581 Selenomonas ruminantium str. K2. prokMSA_id:029567 AF221598 Selenomonas ruminantium isolate EAT2 prokMSA_id:039424 AF221599 Selenomonas ruminantium isolate EG19 prokMSA_id:045161 AF221600 Selenomonas ruminantium isolate ES3 prokMSA_id:028227 AF371700 clone p-1976-s962-5 prokMSA_id:040982 AF373022 Selenomonas ruminatium prokMSA_id:085930 AY244891 rumen clone BF13 prokMSA_id:086616 AY244910 rumen clone BF32 prokMSA_id:013800 M62703 Selenomonas ruminantium subsp. lactilytica str. HD4. prokMSA_id:013801 NONE Selenomonas ruminantium subsp. lactilytica DSM 2872 . 2.30.3.1.1.071 OTU 1 seq prokMSA_id:089235 AB113723 clone:OAB36 2.30.3.1.1.072 OTU 1 seq prokMSA_id:089978 AB113700 clone:OAB13 2.30.3.1.1.073 OTU 1 seq prokMSA_id:092161 AY349406 Selenomonas sp. oral clone HU051 2.30.3.1.1.074 OTU 1 seq prokMSA_id:092263 AY341820 Selenomonas genomosp. P5 clone P4PA_145 2.30.3.1.1.075 OTU 1 seq prokMSA_id:092349 AY349409 Selenomonas sp. oral clone JI021 2.30.3.1.1.076 OTU 1 seq prokMSA_id:092913 AY349408 Selenomonas sp. oral clone IQ048 2.30.3.1.1.077 OTU 1 seq prokMSA_id:093019 AY349403 Selenomonas sp. oral clone FT050 2.30.3.1.1.078 OTU 1 seq prokMSA_id:097870 AY423746 Clostridiales clone 9-1-7 2.30.3.1.1.999 poor quality 84 seqs prokMSA_id:034036 AB028414 oral RP55-5 prokMSA_id:074768 AB034139 rumen 2C28d-3 prokMSA_id:041334 AB056179 rumen clone:1SR prokMSA_id:036039 AB056180 rumen clone:2SR prokMSA_id:024467 AB056181 rumen clone:3SR prokMSA_id:018194 AB056182 rumen clone:4SR prokMSA_id:049529 AB056183 rumen clone:5SR prokMSA_id:032707 AB056184 rumen clone:6SR prokMSA_id:048765 AB056185 rumen clone:7SR prokMSA_id:050311 AB056186 rumen clone:8SR prokMSA_id:024375 AB056187 rumen clone:9SR prokMSA_id:022213 AB056188 rumen clone:10SR prokMSA_id:020965 AB056189 rumen clone:11SR prokMSA_id:035701 AB056190 rumen clone:12SR prokMSA_id:036827 AB056191 rumen clone:13SR prokMSA_id:053097 AB056192 rumen clone:14SR prokMSA_id:036704 AB056193 rumen clone:15SR prokMSA_id:052489 AB056194 rumen clone:16SR prokMSA_id:072873 AB056195 rumen clone:17SR prokMSA_id:048178 AB056196 rumen clone:18SR prokMSA_id:020206 AB056197 rumen clone:19SR prokMSA_id:031439 AB056198 rumen clone:20SR prokMSA_id:071708 AB056199 rumen clone:21SR prokMSA_id:025614 AB056200 rumen clone:22SR prokMSA_id:017206 AB056201 rumen clone:23SR prokMSA_id:039659 AB056202 rumen clone:24SR prokMSA_id:024721 AB056203 rumen clone:25SR prokMSA_id:071047 AB056204 rumen clone:26SR prokMSA_id:051249 AB056205 rumen clone:27SR prokMSA_id:071176 AB056206 rumen clone:28SR prokMSA_id:073381 AB056207 rumen clone:29SR prokMSA_id:071172 AB056208 rumen clone:30SR prokMSA_id:074383 AB056209 rumen clone:31SR prokMSA_id:048281 AB056210 rumen clone:32SR prokMSA_id:073691 AB056211 rumen clone:33SR prokMSA_id:070124 AB056212 rumen clone:34SR prokMSA_id:072581 AB056213 rumen clone:35SR prokMSA_id:071899 AB056214 rumen clone:36SR prokMSA_id:062110 AB064852 firmicute clone:NB4D9 prokMSA_id:062107 AB064853 firmicute clone:NB5E1 prokMSA_id:086810 AB099753 clone: OLDB-B2 prokMSA_id:087707 AB099772 clone: OLDC-C6 prokMSA_id:086718 AB099773 clone: OLDC-D7 prokMSA_id:013798 AF001901 Selenomonas lipolytica str. CF1B. prokMSA_id:049507 AF078401 Grassland soil clone sl2_717 prokMSA_id:031426 AF175672 WJGRT-211 prokMSA_id:024024 AF261793 swine feces F30 prokMSA_id:028692 AF287801 Selenomonas dianae prokMSA_id:071474 AF287803 Selenomonas flueggei prokMSA_id:072144 AF357556 mpn-isolate group 8 prokMSA_id:027264 AF373026 Pectinatus cerevisiiphilus prokMSA_id:047330 AF376163 ckncm259-c8h12 prokMSA_id:068882 AF376166 ckncm262-c8b6 prokMSA_id:068881 AF376167 ckncm263-2m8f1 prokMSA_id:051612 AF376173 ckncm269-2m5e10 prokMSA_id:041534 AF376174 ckncm270-m8c10 prokMSA_id:030866 AF376176 ckncm272-c8f11 prokMSA_id:068880 AF376177 ckncm273-2m8f2 prokMSA_id:074753 AF376178 ckncm274-m5g9 prokMSA_id:036759 AF376179 ckncm275-m5g1 prokMSA_id:031637 AF376181 ckncm277-m5d3 prokMSA_id:046676 AF376182 ckncm278-c8g10 prokMSA_id:031132 AF376184 ckncm280-2c5e7 prokMSA_id:030454 AF429188 clone CR99-2-02 prokMSA_id:026932 AF445222 Swine fecal FPC61 prokMSA_id:051379 AF445223 Swine fecal FPC77 prokMSA_id:036136 AF445245 Swine manure pit PPC97 prokMSA_id:013805 AJ010959 Anaerovibrio lipolytica DSM 3074. prokMSA_id:013806 AJ010963 Centipeda periodontii DSM 2778. prokMSA_id:029164 AJ241755 microorganism clone *Cow6 prokMSA_id:043276 AJ241758 microorganism clone *Cow8 prokMSA_id:026483 AJ241761 microorganism clone *Cow15 prokMSA_id:021884 AJ241764 microorganism clone *Cow17 prokMSA_id:041711 AJ241766 microorganism clone Cow6 prokMSA_id:041312 AY006716 rumen prokMSA_id:022263 AY006736 rumen prokMSA_id:090740 AY311696 clone YRCD35 prokMSA_id:090672 AY311766 clone YRCF06 prokMSA_id:090174 AY315203 rumen clone JRCG15 prokMSA_id:013808 M62701 Quinella ovalis. prokMSA_id:013797 M62702 Selenomonas ruminantium subsp. ruminantium str. GA192 . prokMSA_id:013819 NONE Pectinatus frisingensis ATCC 33332 . prokMSA_id:013811 X81878 Mitsuokella multacida str. A 405-1 NCTC 10934 . prokMSA_id:013810 X84517 unnamed organism. 2.30.3.1.2 VLN.PARVULA_SUBGROUP 155 seqs 2.30.3.1.2.001 OTU 14 seqs prokMSA_id:046322 AB034085 rumen 3C3d-7 prokMSA_id:050822 AB034086 rumen 5C3d-9 prokMSA_id:052166 AB034087 rumen 3C3d-18 prokMSA_id:074182 AF283705 Megasphaera elsdenii strain La03 prokMSA_id:020064 AF371696 clone p-1934-s962-3 prokMSA_id:025188 AY038993 Megasphaera elsdenii strain JL1 prokMSA_id:046919 AY038994 Megasphaera elsdenii strain AW106 prokMSA_id:071785 AY038995 Megasphaera elsdenii strain T81 prokMSA_id:024370 AY038996 Megasphaera elsdenii strain YJ-4 prokMSA_id:081738 AY196919 Megasphaera elsdenii strain 7-11 prokMSA_id:013829 M26493 Megasphaera elsdenii str. B159 ATCC 17752. prokMSA_id:020560 U95027 Megasphaera elsdenii ATCC 25940 prokMSA_id:036860 U95028 Megasphaera elsdenii S2 prokMSA_id:053032 U95029 Megasphaera elsdenii S3 2.30.3.1.2.002 OTU 1 seq prokMSA_id:013828 L37040 Megasphaera cerevisiae str. VTT-E-85230. 2.30.3.1.2.003 OTU 3 seqs prokMSA_id:013826 U13040 sp. str. SC 3D. prokMSA_id:013827 X82500 Dialister pneumosintes ATCC 33048 . prokMSA_id:013825 Z36297 sp. str. SC -5. 2.30.3.1.2.004 OTU 6 seqs prokMSA_id:057997 AB094185 clone:G-39 prokMSA_id:013823 AF186071 Veillonella ratti ATCC 17746. prokMSA_id:013824 AF186072 Veillonella criceti ATCC 17747. prokMSA_id:082021 AY211542 Veillonella ratti strain ADV4313.2 prokMSA_id:097329 AY355138 Veillonella ratti prokMSA_id:096523 AY355139 Veillonella rodentium 2.30.3.1.2.005 OTU 18 seqs prokMSA_id:052223 AF201991 human oral A43 prokMSA_id:033416 AF287781 Veillonella sp. oral clone X042 prokMSA_id:021762 AF287782 Veillonella sp. oral clone AA050 prokMSA_id:040553 AF366266 Veillonella sp. clone BU083 prokMSA_id:054075 AF371939 clone p-5279-2Wa3 prokMSA_id:025275 AF439639 Veillonella dispar prokMSA_id:030716 AF439640 Veillonella parvula prokMSA_id:035224 AF439641 Veillonella atypica prokMSA_id:035913 AF439642 Veillonella sp. ADV 360.00 prokMSA_id:031257 AF439643 Veillonella sp. ADV 360.00 prokMSA_id:031205 AF439644 Veillonella sp. ADV 360.00 prokMSA_id:036712 AF439645 Veillonella sp. ADV 360.00 prokMSA_id:086428 AF499900 clone ABLCf8 prokMSA_id:061067 AF530329 clone cadhufec19f09yvb prokMSA_id:078650 AY189644 low G+C Gram-positive clone EarCan117 prokMSA_id:095347 AY355140 Veillonella caviae prokMSA_id:013820 X84006 Veillonella dispar DSM 20735 . prokMSA_id:013822 X84007 Veillonella atypica DSM 20739 . 2.30.3.1.2.006 OTU 6 seqs prokMSA_id:072316 AF287787 Dialister sp. oral clone BS095 prokMSA_id:070158 AF287788 Dialister sp. oral strain GBA27 prokMSA_id:068355 AF481209 Dialister sp. E2_20 E1 oral isolate prokMSA_id:061048 AF530347 clone cadhufec18a06sav prokMSA_id:059563 AY134907 Dialister sp. oral clone FY011 prokMSA_id:085145 AY162469 Dialister invisus 2.30.3.1.2.007 OTU 2 seqs prokMSA_id:071202 AF287786 Dialister sp. oral clone BS016 prokMSA_id:055383 AF481210 Dialister sp. oral clone MCE7_134 E2 2.30.3.1.2.008 OTU 1 seq prokMSA_id:023368 AF473837 Dialister sp. ADV 04.01 2.30.3.1.2.009 OTU 5 seqs prokMSA_id:074093 AF385566 Megasphaera sp. oral clone BU057 prokMSA_id:028862 AF473833 Anaerosphaera nuciformis strain AIP 49.01 prokMSA_id:038606 AF473834 Anaerosphaera nuciformis strain AIP 412.00 prokMSA_id:087238 AY278622 Megasphaera genomosp. C1 prokMSA_id:090550 AY328359 inhufecA-11 2.30.3.1.2.010 OTU 4 seqs prokMSA_id:026894 AF473836 Veillonella sp. ADV 281.99 prokMSA_id:085594 AY244769 Veillonella sp. 2001-112662 prokMSA_id:096612 AY355141 Veillonella sp. ADV 2216.03 prokMSA_id:096711 AY355142 Veillonella sp. ADV 3198.03 2.30.3.1.2.011 OTU 1 seq prokMSA_id:028369 AJ409007 clone HuCB85 2.30.3.1.2.012 OTU 3 seqs prokMSA_id:032378 AB034146 rumen 2C28d-8 prokMSA_id:052521 AF371693 clone p-922-s962-5 prokMSA_id:048207 AF371694 clone p-1941-s962-3 2.30.3.1.2.013 OTU 3 seqs prokMSA_id:032722 AB034144 rumen 4C28d-7 prokMSA_id:039342 AB034145 rumen 4C28d-10 prokMSA_id:037391 AF371695 clone p-1740-b3 2.30.3.1.2.014 OTU 3 seqs prokMSA_id:035000 AF287783 Megasphaera sp. oral clone BB166 prokMSA_id:043739 AF338413 Anaerococcus geminatus prokMSA_id:068342 AF481223 Megasphaera sp. oral clone MCE3_141 P1 2.30.3.1.2.015 OTU 1 seq prokMSA_id:058262 AF548373 Allisonella histaminiformans 2.30.3.1.2.016 OTU 2 seqs prokMSA_id:042721 AF287784 Megasphaera sp. oral clone CS025 prokMSA_id:041128 AF287785 Megasphaera sp. oral clone BS073 2.30.3.1.2.017 OTU 1 seq prokMSA_id:055140 AY152842 clone PIC29 2.30.3.1.2.018 OTU 1 seq prokMSA_id:077363 AF349425 A4 2.30.3.1.2.019 OTU 23 seqs prokMSA_id:085502 AY271931 Megasphaera sp. clone FX13-5 prokMSA_id:082562 AY271932 Megasphaera sp. clone FX17-5 prokMSA_id:085236 AY271933 Megasphaera sp. clone FX27-5 prokMSA_id:084013 AY271934 Megasphaera sp. clone FX31-5 prokMSA_id:085222 AY271935 Megasphaera sp. clone FX32-5 prokMSA_id:084370 AY271936 Megasphaera sp. clone FX46-5 prokMSA_id:084040 AY271937 Megasphaera sp. clone FX51-5 prokMSA_id:085801 AY271938 Megasphaera sp. clone FX62-5 prokMSA_id:083508 AY271939 Megasphaera sp. clone FX65-5 prokMSA_id:083842 AY271940 Megasphaera sp. clone FX7-5 prokMSA_id:083807 AY271941 Megasphaera sp. clone FX82-5 prokMSA_id:085720 AY271942 Megasphaera sp. clone FX84-5 prokMSA_id:084969 AY271943 Megasphaera sp. clone FX88-5 prokMSA_id:084404 AY271944 Megasphaera sp. clone FX98-5 prokMSA_id:085911 AY271945 Megasphaera sp. clone FX107-5 prokMSA_id:085516 AY271946 Megasphaera sp. clone FX114-5 prokMSA_id:085171 AY271947 Megasphaera sp. clone FX117-5 prokMSA_id:084645 AY271948 Megasphaera sp. clone FX121-5 prokMSA_id:086382 AY271949 Megasphaera sp. clone FX127-5 prokMSA_id:082796 AY271950 Megasphaera sp. clone FX130-5 prokMSA_id:085575 AY271951 Megasphaera sp. clone FX164-5 prokMSA_id:085917 AY271952 Megasphaera sp. clone FX167-5 prokMSA_id:086007 AY271953 Megasphaera sp. clone FX189-5 2.30.3.1.2.020 OTU 2 seqs prokMSA_id:095828 AY371262 clone Dpcom123 prokMSA_id:094802 AY373330 clone Dpcom136 2.30.3.1.2.021 OTU 3 seqs prokMSA_id:095268 AY394004 Veillonella sp. clone 59-7-18 prokMSA_id:098784 AY423747 Veillonella sp. clone 59-7-6 prokMSA_id:097039 AY423748 Veillonella sp. clone 59-8-23 2.30.3.1.2.022 OTU 1 seq prokMSA_id:096225 AY371267 clone Dpcom129 2.30.3.1.2.999 poor quality 51 seqs prokMSA_id:019685 AB028340 oral SH20 prokMSA_id:029465 AB028346 oral SH45 prokMSA_id:024060 AB028355 oral SH67 prokMSA_id:044099 AB028391 oral AP60-35 prokMSA_id:033827 AB028394 oral AP60-39 prokMSA_id:045644 AB028412 oral RP55-2 prokMSA_id:041722 AB028416 oral RP55-7 prokMSA_id:029611 AB028418 oral RP55-9 prokMSA_id:024689 AB028422 oral RP55-13 prokMSA_id:050939 AB028424 oral RP55-16 prokMSA_id:027976 AB028425 oral RP55-17 prokMSA_id:028220 AB028426 oral RP55-18 prokMSA_id:043292 AB028428 oral RP55-20 prokMSA_id:022625 AB028431 oral RP55-23 prokMSA_id:031308 AB028432 oral RP55-24 prokMSA_id:022757 AB028439 oral RP55-42 prokMSA_id:062113 AB064854 Megasphaera sp. clone:NB2G11 prokMSA_id:062111 AB064855 Megasphaera sp. clone:NB2G7 prokMSA_id:062112 AB064856 Megasphaera sp. clone:NS2E7 prokMSA_id:055943 AB064857 Veillonella sp. clone:NB2F1 prokMSA_id:062106 AB064858 firmicute clone:NB2H2 prokMSA_id:062105 AB064859 firmicute clone:NS2B11 prokMSA_id:062041 AB064933 Human intestinal firmicute CS32 prokMSA_id:087022 AB099774 clone: OLDC-D10 prokMSA_id:086786 AB099775 clone: OLDC-C8 prokMSA_id:087092 AB099776 clone: OLDC-E3 prokMSA_id:044531 AF201989 human oral A40 prokMSA_id:020613 AF201990 human oral A41 prokMSA_id:069962 AF253329 human infant D1F prokMSA_id:069969 AF253336 human infant D13F prokMSA_id:074419 AF253342 human infant D29E prokMSA_id:032092 AF261784 swine feces F10 prokMSA_id:040138 AF261787 swine feces F13 prokMSA_id:037444 AF376169 ckncm265-2c5b12 prokMSA_id:019328 AF376171 ckncm267-m5h2 prokMSA_id:041616 AF376172 ckncm268-c8b11 prokMSA_id:016804 AF445203 Swine fecal FPC65 prokMSA_id:027660 AF445204 Swine fecal FPC23B prokMSA_id:067251 AF495437 clone F13.41 prokMSA_id:083698 AF499846 clone LCLC47 prokMSA_id:061026 AF530371 clone cadhufec16c10 prokMSA_id:042339 AJ320168 Veillonella sp. clone 00701 prokMSA_id:062581 AJ504538 isolate P1CN83 prokMSA_id:057141 AJ518393 clone Neu4P1-80 prokMSA_id:095757 AJ555140 Veillonella atypica prokMSA_id:040965 AY006583 rumen prokMSA_id:081317 AY196917 Megasphaera elsdenii strain 2-9 prokMSA_id:082178 AY196918 Megasphaera elsdenii strain 4-13 prokMSA_id:016907 U81733 clone vadinHA75 prokMSA_id:013821 X84005 Veillonella parvula DSM 2008 . prokMSA_id:041941 Z82969 sp. clone group T12B 2.30.3.1.3 SPM.PAUCIVORANS_SUBGROUP 116 seqs 2.30.3.1.3.002 OTU 1 seq prokMSA_id:013850 AJ229242 str. SB90. 2.30.3.1.3.003 OTU 1 seq prokMSA_id:013849 U68674 clone P47. 2.30.3.1.3.004 OTU 2 seqs prokMSA_id:021147 AJ279799 Sporomusa malonica strain DSM 5090 prokMSA_id:013847 Y17763 Sporomusa DR1/8 str. DR1/8. 2.30.3.1.3.005 OTU 3 seqs prokMSA_id:036727 AJ229183 from anoxic bulk soil clone BSV16 prokMSA_id:013844 Y17760 Sporomusa DR6 str. DR6. prokMSA_id:013846 Y17762 Sporomusa DR15 str. DR15. 2.30.3.1.3.006 OTU 2 seqs prokMSA_id:023304 AJ279800 Sporomusa ovata strain DSM 2662 prokMSA_id:013845 Y17761 Sporomusa DR5 str. DR5. 2.30.3.1.3.007 OTU 1 seq prokMSA_id:013843 AJ009494 clone SJA-143. 2.30.3.1.3.008 OTU 1 seq prokMSA_id:013842 AJ009486 clone SJA-112. 2.30.3.1.3.009 OTU 1 seq prokMSA_id:013841 AJ009477 clone SJA-84. 2.30.3.1.3.010 OTU 1 seq prokMSA_id:013840 AJ009459 clone SJA-29. 2.30.3.1.3.011 OTU 1 seq prokMSA_id:013839 AJ010964 Acetonema longum str. APO-1 DSM 6540 . 2.30.3.1.3.012 OTU 1 seq prokMSA_id:013837 AJ010960 Anaerovibrio glycerini DSM 5192. 2.30.3.1.3.013 OTU 1 seq prokMSA_id:013836 Y09976 Sporomusa silvacetica str. DG-1 DSM 10669 . 2.30.3.1.3.014 OTU 1 seq prokMSA_id:016834 AJ229233 from anoxic bulk soil clone BSV90 2.30.3.1.3.015 OTU 1 seq prokMSA_id:020905 AF275924 AA56 2.30.3.1.3.017 OTU 9 seqs prokMSA_id:013851 AF071415 Anaeromusa acidaminophila DSM 3853. prokMSA_id:021178 AF150722 Elbe River snow isolate SeqSRB5 prokMSA_id:028534 AF349761 DCE13 prokMSA_id:033760 AF349762 TCE33 prokMSA_id:013838 AJ010961 Anaerovibrio burkinabensis DSM 6283. prokMSA_id:066184 AJ488080 clone IB-27 prokMSA_id:066175 AJ488089 clone IIB-7 prokMSA_id:066172 AJ488092 clone IIIA-2 prokMSA_id:094366 AY373336 clone Dpcom142 2.30.3.1.3.018 OTU 1 seq prokMSA_id:025868 AJ279801 Sporomusa sphaeroides strain DSM 2875 2.30.3.1.3.019 OTU 1 seq prokMSA_id:026966 AF295661 spore-forming 169 2.30.3.1.3.020 OTU 1 seq prokMSA_id:027433 AF391988 thermal soil clone YNPFFP9 2.30.3.1.3.021 OTU 1 seq prokMSA_id:029693 AJ229225 from anoxic bulk soil clone BSV81 2.30.3.1.3.022 OTU 1 seq prokMSA_id:072075 AF275913 AA01 2.30.3.1.3.023 OTU 1 seq prokMSA_id:031050 AJ279798 Sporomusa acidovorans strain DSM 3132 2.30.3.1.3.024 OTU 1 seq prokMSA_id:031092 AJ279802 Propionispora vibrioides isolate FKBS1 2.30.3.1.3.025 OTU 1 seq prokMSA_id:034224 AJ229198 from anoxic bulk soil clone BSV43 2.30.3.1.3.026 OTU 1 seq prokMSA_id:055680 AB087357 clone:F30 2.30.3.1.3.027 OTU 1 seq prokMSA_id:060600 AF407698 clone G07 2.30.3.1.3.028 OTU 2 seqs prokMSA_id:060709 AJ506191 Sporomusa aerovorans strain TMAO3 prokMSA_id:060705 AJ506192 Sporomusa aerovorans strain TMAM3 2.30.3.1.3.029 OTU 1 seq prokMSA_id:063284 AF523935 clone RCP2-18 2.30.3.1.3.030 OTU 2 seqs prokMSA_id:066174 AJ488090 clone IIIA-1 prokMSA_id:066173 AJ488091 clone IIIA-10 2.30.3.1.3.031 OTU 2 seqs prokMSA_id:066181 AJ488084 clone IIA-26 prokMSA_id:072034 AJ488098 clone IIIB-2 2.30.3.1.3.032 OTU 1 seq prokMSA_id:066494 AY100595 clone cvf118047 2.30.3.1.3.033 OTU 1 seq prokMSA_id:066500 AY100588 clone cvf63077 2.30.3.1.3.034 OTU 1 seq prokMSA_id:066919 AJ306783 clone SHA-109 2.30.3.1.3.035 OTU 1 seq prokMSA_id:070372 AY114315 candidate division BRC1 clone LD1-PA21 2.30.3.1.3.036 OTU 1 seq prokMSA_id:077768 AJ508927 Propionispora hippei clone 5 2.30.3.1.3.037 OTU 1 seq prokMSA_id:079562 AY185322 clone AKS21 2.30.3.1.3.038 OTU 1 seq prokMSA_id:081047 AY218598 clone KD2-97 2.30.3.1.3.039 OTU 1 seq prokMSA_id:082164 AY218581 clone KD2-28 2.30.3.1.3.040 OTU 1 seq prokMSA_id:082350 AY214180 clone ZZ12C4 2.30.3.1.3.041 OTU 1 seq prokMSA_id:085463 AY239542 clone CARB_ESS_11 2.30.3.1.3.042 OTU 3 seqs prokMSA_id:094360 AY372050 Anaerospora hongkongensis prokMSA_id:094847 AY372051 Anaerospora hongkongensis prokMSA_id:095174 AY372052 Anaerospora hongkongensis 2.30.3.1.3.043 OTU 2 seqs prokMSA_id:095976 AY330127 Clostridium sp. clone AC039 prokMSA_id:095835 AY330129 Clostridium sp. clone AC007 2.30.3.1.3.044 OTU 1 seq prokMSA_id:096971 AJ538359 clone 280 2.30.3.1.3.999 poor quality 56 seqs prokMSA_id:051507 AB011312 clone: MUG20 prokMSA_id:058540 AB064837 Gram-positive clone:NB4B4 prokMSA_id:062108 AB064850 firmicute clone:NB2D6 prokMSA_id:056020 AB064851 firmicute clone:NS2A2 prokMSA_id:062045 AB064931 Human intestinal firmicute CB15 prokMSA_id:062040 AB064932 Human intestinal firmicute CS13 prokMSA_id:067929 AF365851 clone BT60PA10BF5 prokMSA_id:068883 AF376159 ckncm255-c8e3 prokMSA_id:052828 AF390938 clone ICBAI4 prokMSA_id:038891 AF429045 clone CR99-7-11 prokMSA_id:052584 AF459067 E5-46-SC1-139 prokMSA_id:017725 AJ006604 Sulfate-reducing strain STP2 prokMSA_id:051018 AJ006605 Sulfate-reducing strain STP3 prokMSA_id:035634 AJ006606 Sulfate-reducing strain STP11 prokMSA_id:039595 AJ006608 Sulfate-reducing strain STP13 prokMSA_id:025895 AJ006609 Sulfate-reducing strain STP14 prokMSA_id:013833 AJ010962 DSM 1736. prokMSA_id:017184 AJ287691 low G+C Gram-positive 111ev prokMSA_id:020186 AJ287692 low G+C Gram-positive 43ev prokMSA_id:017339 AJ287693 low G+C Gram-positive 411ev prokMSA_id:036005 AJ287694 low G+C Gram-positive 370ev prokMSA_id:051905 AJ287695 low G+C Gram-positive 82ev prokMSA_id:052781 AJ287696 low G+C Gram-positive 135ev prokMSA_id:025740 AJ287697 low G+C Gram-positive 75ev prokMSA_id:034626 AJ287698 low G+C Gram-positive 108ev prokMSA_id:055677 AJ287699 low G+C Gram-positive 132ev prokMSA_id:024074 AJ287700 low G+C Gram-positive 225ev prokMSA_id:033457 AJ287701 low G+C Gram-positive 310ev prokMSA_id:052149 AJ287740 low G+C Gram-positive 121ev prokMSA_id:024869 AJ287741 low G+C Gram-positive 377ev prokMSA_id:028583 AJ287742 low G+C Gram-positive 275ev prokMSA_id:021747 AJ287743 low G+C Gram-positive 5ev prokMSA_id:050931 AJ287744 low G+C Gram-positive 59ev prokMSA_id:045002 AJ287745 low G+C Gram-positive 77ev prokMSA_id:026411 AJ289211 RSb12 prokMSA_id:030935 AJ289228 RSD12 prokMSA_id:018312 AJ289230 RSD14 prokMSA_id:077872 AJ459912 Acidaminococcaceae clone BED 4 DGGE ME7 prokMSA_id:083343 AY092217 clone BF112 prokMSA_id:086397 AY092218 clone BF57 prokMSA_id:083038 AY092219 clone BF65 prokMSA_id:083389 AY092220 clone BF188 prokMSA_id:085422 AY092221 clone BF20 prokMSA_id:085643 AY092222 clone BF55 prokMSA_id:085344 AY092223 clone BF66 prokMSA_id:085685 AY092224 clone BF103 prokMSA_id:084417 AY092225 clone BF27 prokMSA_id:083007 AY214789 low G+C Gram-positive clone BB-1-A9 prokMSA_id:084146 AY256617 DGGE band A2-3 prokMSA_id:013831 L09060 clone CY 69. prokMSA_id:013832 M59110 Clostridium quercicolum ATCC 25974 . prokMSA_id:013834 M59117 Sporomusa paucivorans str. X DSM 3697 . prokMSA_id:013830 M61919 Acetonema longum str. APO-1 DSM 6540 . prokMSA_id:013835 M61920 Sporomusa termitida str. JSN-2. prokMSA_id:013848 U68630 clone M50. prokMSA_id:052552 Z96944 strain MR56A 2.30.3.1.4 PHA.FAECIUM_SUBGROUP 70 seqs 2.30.3.1.4.001 OTU 3 seqs prokMSA_id:013862 AJ006980 Succinispira mobilis str. 19gly1. prokMSA_id:066179 AJ488085 clone IIA-29 prokMSA_id:066171 AJ488094 clone IIIA-4 2.30.3.1.4.002 OTU 1 seq prokMSA_id:013861 U81750 clone vadinHB04. 2.30.3.1.4.003 OTU 4 seqs prokMSA_id:061029 AF530370 clone cadhufec137c10 prokMSA_id:013858 X72865 Phascolarctobacterium faecium ACM 3679 . prokMSA_id:013859 X72866 Phascolarctobacterium faecium ACM 3681. prokMSA_id:013860 X72867 Phascolarctobacterium faecium ACM 3680. 2.30.3.1.4.004 OTU 2 seqs prokMSA_id:013857 AB009201 clone RFN45. prokMSA_id:013855 X81137 Succiniclasticum ruminis str. SE10 DSM 9236 . 2.30.3.1.4.005 OTU 14 seqs prokMSA_id:013856 AB009182 clone RFN24. prokMSA_id:085413 AY244885 rumen clone BF7 prokMSA_id:086657 AY244887 rumen clone BF9 prokMSA_id:084160 AY244889 rumen clone BF11 prokMSA_id:085652 AY244892 rumen clone BF14 prokMSA_id:084795 AY244956 rumen clone BS2 prokMSA_id:085534 AY244962 rumen clone BS8 prokMSA_id:084451 AY244964 rumen clone BS10 prokMSA_id:085821 AY244969 rumen clone BS15 prokMSA_id:083931 AY244970 rumen clone BS16 prokMSA_id:083021 AY244972 rumen clone BS18 prokMSA_id:085301 AY244974 rumen clone BS20 prokMSA_id:082841 AY244975 rumen clone BS24 prokMSA_id:086614 AY244976 rumen clone BS25 2.30.3.1.4.006 OTU 2 seqs prokMSA_id:013853 X77951 Acidaminococcus fermentans str. AO. prokMSA_id:013852 X78017 Acidaminococcus fermentans str. VR4 DSM 20731 . 2.30.3.1.4.007 OTU 1 seq prokMSA_id:020105 AF473835 Acidaminococcus sp. ADV 255.99 2.30.3.1.4.008 OTU 2 seqs prokMSA_id:028188 AB034141 rumen 3C28d-10 prokMSA_id:022697 AB034143 rumen 4C28d-16 2.30.3.1.4.009 OTU 1 seq prokMSA_id:025947 AF371708 clone p-3420-SwA2 2.30.3.1.4.010 OTU 3 seqs prokMSA_id:035430 AJ408061 equine intestinal sp. CL27 clone CL27 prokMSA_id:029062 AJ408079 equine intestinal sp. CW09 clone CW09 prokMSA_id:026270 AJ408232 equine intestinal sp. PL25 clone PL25 2.30.3.1.4.011 OTU 1 seq prokMSA_id:029289 AF280848 mle1-9 2.30.3.1.4.012 OTU 2 seqs prokMSA_id:045688 AF371705 clone p-286-a3 prokMSA_id:031564 AF371706 clone p-369-a3 2.30.3.1.4.013 OTU 2 seqs prokMSA_id:032193 AF220326 O16B1 prokMSA_id:070334 AF220334 O18G7 2.30.3.1.4.014 OTU 1 seq prokMSA_id:033044 AF371707 clone p-2464-18B5 2.30.3.1.4.015 OTU 4 seqs prokMSA_id:069824 AF132234 adhufec395 prokMSA_id:040064 AF376431 ckncm198-F4M.1B9 prokMSA_id:073552 AF530309 clone cadhufec079h7 prokMSA_id:092149 AY343237 clone REC6M_49 2.30.3.1.4.016 OTU 1 seq prokMSA_id:044259 AB056671 equine intestinal clone:YT11 2.30.3.1.4.017 OTU 1 seq prokMSA_id:083079 AY244967 rumen clone BS13 2.30.3.1.4.018 OTU 1 seq prokMSA_id:084124 AY244973 rumen clone BS19 2.30.3.1.4.019 OTU 2 seqs prokMSA_id:086218 AY244955 rumen clone BS1 prokMSA_id:085094 AY244957 rumen clone BS3 2.30.3.1.4.020 OTU 1 seq prokMSA_id:086208 AY244888 rumen clone BF10 2.30.3.1.4.021 OTU 1 seq prokMSA_id:086664 AY231317 clone ER1_17 2.30.3.1.4.022 OTU 1 seq prokMSA_id:098761 AY160827 clone COB P3-14 2.30.3.1.4.999 poor quality 19 seqs prokMSA_id:062109 AB064849 firmicute clone:NB4G9 prokMSA_id:065269 AB075666 chicken cecal clone:1A7 prokMSA_id:058724 AB080850 human intestinal clone:JW2E11 prokMSA_id:087321 AB099771 clone: OLDB-D6 prokMSA_id:026992 AF376161 ckncm257-2m5b7 prokMSA_id:029858 AF376329 ckncm096-B412.1D1 prokMSA_id:038664 AF376331 ckncm098-B412.1F6 prokMSA_id:051357 AF376334 ckncm101-B412.2A8 prokMSA_id:049758 AY006589 rumen prokMSA_id:069330 AY006594 rumen prokMSA_id:025448 AY006707 rumen prokMSA_id:082055 AY217387 LTCE-T2A 5A prokMSA_id:089276 AY311732 clone YRCE26 prokMSA_id:089441 AY315229 rumen clone JRCG58 prokMSA_id:090049 AY315251 rumen clone JRCH48 prokMSA_id:089655 AY315263 rumen clone JRCI15 prokMSA_id:088544 AY315298 rumen clone JRCI67 prokMSA_id:025985 U81690 clone vadinBE78 prokMSA_id:013854 X65935 Acidaminococcus fermentans str. VR4 ATCC 25085 . 2.30.3.2 HELIOBACTERIUM_GROUP 284 seqs 2.30.3.2.1 DFI.DEHALOGENANS_SUBGROUP 198 seqs 2.30.3.2.1.004 OTU 2 seqs prokMSA_id:050658 AF357919 Desulfitobacterium sp. Viet-1 prokMSA_id:013900 X81032 Desulfitobacterium sp. str. PCE1. 2.30.3.2.1.006 OTU 1 seq prokMSA_id:013895 AJ009450 clone SJA-7. 2.30.3.2.1.007 OTU 1 seq prokMSA_id:013894 X99706 Syntrophobotulus glycolicus str. FlGlyR. 2.30.3.2.1.008 OTU 1 seq prokMSA_id:013893 X55797 Peptococcus niger. 2.30.3.2.1.009 OTU 1 seq prokMSA_id:013890 Y11571 Desulfosporosinus orientis DSM 8344. 2.30.3.2.1.013 OTU 2 seqs prokMSA_id:013883 AF159121 Desulfosporosinus Blif str. Blif. prokMSA_id:070768 AF295659 Desulfosporosinus sp. 159 2.30.3.2.1.014 OTU 1 seq prokMSA_id:013882 Z73452 str. Boom-3m-02. 2.30.3.2.1.015 OTU 1 seq prokMSA_id:013881 U81652 clone vadinBA43. 2.30.3.2.1.016 OTU 1 seq prokMSA_id:013880 AJ009503 clone SJA-173. 2.30.3.2.1.017 OTU 1 seq prokMSA_id:013879 AJ009489 clone SJA-118. 2.30.3.2.1.018 OTU 1 seq prokMSA_id:013873 AF050591 clone WCHB1-84. 2.30.3.2.1.019 OTU 2 seqs prokMSA_id:013872 AF050590 clone WCHB1-77. prokMSA_id:081849 AY214183 clone ZZ12C8 2.30.3.2.1.020 OTU 1 seq prokMSA_id:013871 AF001725 clone RCP1. 2.30.3.2.1.021 OTU 2 seqs prokMSA_id:063748 AJ493052 Desulfosporosinus orientis strain DSMZ 7493 prokMSA_id:013870 Y11570 Desulfosporosinus orientis str. Singapore I DSM 765 . 2.30.3.2.1.024 OTU 1 seq prokMSA_id:013866 AB009212 clone RFN65. 2.30.3.2.1.026 OTU 9 seqs prokMSA_id:072154 AF320982 Desulfitobacterium frappieri strain G2 prokMSA_id:045375 AJ276701 Desulfitobacterium frappieri strain DP7 prokMSA_id:049693 AJ404686 Desulfitobacterium frappieri strain TCP-A prokMSA_id:097238 AJ512772 Desulfitobacterium sp. PCE-S strain PCE-S prokMSA_id:013863 U40078 Desulfitobacterium frappieri str. PCP-1. prokMSA_id:013865 U68528 Desulfitobacterium chlororespirans str. Co23. prokMSA_id:013901 X94975 Desulfitobacterium hafniense str. DCB-2. prokMSA_id:013902 X95742 Desulfitobacterium sp. str. TCE1. prokMSA_id:013867 X95972 Desulfitobacterium sp. 2.30.3.2.1.027 OTU 1 seq prokMSA_id:013864 AB015580 str. BD7-4. 2.30.3.2.1.028 OTU 1 seq prokMSA_id:017148 Z73455 species isolate Boom-3m-05 2.30.3.2.1.029 OTU 1 seq prokMSA_id:018032 AB052396 Symbiobacterium sp. HN9 2.30.3.2.1.030 OTU 1 seq prokMSA_id:056724 AF507702 soil clone C0133 2.30.3.2.1.031 OTU 1 seq prokMSA_id:070151 AJ289179 E1-K16 2.30.3.2.1.032 OTU 5 seqs prokMSA_id:035128 AJ006607 Sulfate-reducing strain STP12 prokMSA_id:095633 AJ582756 Desulfosporosinus idahoense strain A10 prokMSA_id:096132 AJ582757 Desulfosporosinus limneticum strain STP12 prokMSA_id:059920 AY133077 low G+C Gram-positive clone ccs270 prokMSA_id:056240 AY133090 low G+C Gram-positive clone ccslm233 2.30.3.2.1.033 OTU 1 seq prokMSA_id:019343 AF407393 clone RB9C2 2.30.3.2.1.034 OTU 1 seq prokMSA_id:020587 AY007666 Desulfosporosinus sp. P1 2.30.3.2.1.036 OTU 9 seqs prokMSA_id:022205 AF422637 clone d025 prokMSA_id:029474 AF422677 clone d154 prokMSA_id:013896 AJ009454 clone SJA-19. prokMSA_id:013897 AJ009464 clone SJA-47. prokMSA_id:072453 AJ249096 SHA-67 prokMSA_id:065484 AJ278164 Dehalobacter sp. SHD-11 prokMSA_id:066193 AJ488071 clone IA-18 prokMSA_id:013898 U84497 Dehalobacter restrictus str. PER-K23. prokMSA_id:013899 Y10164 Dehalobacter restrictus str. TEA. 2.30.3.2.1.037 OTU 1 seq prokMSA_id:023528 AJ242834 Thermophilic JA2 2.30.3.2.1.038 OTU 1 seq prokMSA_id:023611 AF469399 clone 33-PA24B00 2.30.3.2.1.039 OTU 1 seq prokMSA_id:023926 AB062775 clone:BCf10-04 2.30.3.2.1.040 OTU 1 seq prokMSA_id:025249 AF427080 Desulfosporosinus sp. P3 2.30.3.2.1.041 OTU 1 seq prokMSA_id:026036 AF414568 clone P3IB-51 2.30.3.2.1.042 OTU 1 seq prokMSA_id:026918 AF422631 clone d011 2.30.3.2.1.043 OTU 1 seq prokMSA_id:028888 AF297871 Desulfitobacterium metallireducens 2.30.3.2.1.044 OTU 1 seq prokMSA_id:029453 AF371709 clone p-2785-24E5 2.30.3.2.1.045 OTU 1 seq prokMSA_id:029646 AB034035 rumen 3C0d-20 2.30.3.2.1.046 OTU 1 seq prokMSA_id:056444 AJ306804 clone SHD-17 2.30.3.2.1.047 OTU 1 seq prokMSA_id:031142 AF351218 low G+C Gram-positive clone 36-3 2.30.3.2.1.048 OTU 2 seqs prokMSA_id:033138 AJ249098 SHA-15 prokMSA_id:066943 AJ306750 clone SHA-15 2.30.3.2.1.049 OTU 3 seqs prokMSA_id:051930 AF351223 low G+C Gram-positive clone 36-28 prokMSA_id:050913 AY050581 clone GOUTA9 prokMSA_id:033994 AY050591 clone GOUTB3 2.30.3.2.1.050 OTU 1 seq prokMSA_id:035990 AF424452 candidate division OP11 MERTZ_21CM_286 2.30.3.2.1.051 OTU 1 seq prokMSA_id:036188 AY007667 Desulfosporosinus sp. PFB 2.30.3.2.1.052 OTU 1 seq prokMSA_id:036687 AY037620 soil clone S102 2.30.3.2.1.053 OTU 1 seq prokMSA_id:038434 AJ306706 Desulfosporosinus sp. ML7-SRB15 strain ML7-SRB15 2.30.3.2.1.054 OTU 1 seq prokMSA_id:039065 AF424453 candidate division OP11 MERTZ_21CM_334 2.30.3.2.1.055 OTU 1 seq prokMSA_id:040595 AJ229187 from anoxic bulk soil clone BSV24 2.30.3.2.1.056 OTU 1 seq prokMSA_id:042091 AF287780 Peptococcus-like sp. oral clone I070 2.30.3.2.1.057 OTU 1 seq prokMSA_id:042236 AF376446 ckncm213-F4M.1G2 2.30.3.2.1.058 OTU 1 seq prokMSA_id:046259 AJ408051 equine intestinal sp. CL16 clone CL16 2.30.3.2.1.059 OTU 1 seq prokMSA_id:046485 AB049340 Desulfitobacterium sp. Y51 2.30.3.2.1.060 OTU 1 seq prokMSA_id:046527 AF280849 mle1-12 2.30.3.2.1.061 OTU 1 seq prokMSA_id:046816 AF224842 clone Car112fc 2.30.3.2.1.062 OTU 1 seq prokMSA_id:048659 AF424449 candidate division OP11 MERTZ_21CM_115 2.30.3.2.1.063 OTU 1 seq prokMSA_id:069301 AF507944 Dehalobacter sp. TCA1 2.30.3.2.1.064 OTU 1 seq prokMSA_id:061053 AF530343 clone cadhufec17f05sav 2.30.3.2.1.065 OTU 1 seq prokMSA_id:063100 AY093483 clone MB-C2-152 2.30.3.2.1.066 OTU 2 seqs prokMSA_id:063113 AY093470 clone MB-B2-105 prokMSA_id:098258 AY375144 clone D5 2.30.3.2.1.067 OTU 1 seq prokMSA_id:063203 AF524024 clone FW129 2.30.3.2.1.068 OTU 1 seq prokMSA_id:063299 AF523919 clone RCP2-71 2.30.3.2.1.069 OTU 1 seq prokMSA_id:066903 AJ306803 clone SHD-2 2.30.3.2.1.070 OTU 1 seq prokMSA_id:066904 AJ306802 clone SHD-269 2.30.3.2.1.071 OTU 1 seq prokMSA_id:068340 AF481224 Peptococcus sp. oral clone MCE10_265 E1 2.30.3.2.1.072 OTU 1 seq prokMSA_id:069967 AF455061 clone B7 2.30.3.2.1.073 OTU 1 seq prokMSA_id:070866 AJ302078 Desulfosporosinus sp. LauIII isolate LauIII 2.30.3.2.1.074 OTU 1 seq prokMSA_id:071962 AF407196 clone GIF4 2.30.3.2.1.076 OTU 10 seqs prokMSA_id:013888 AF076247 Desulfosporosinus S8 str. S8. prokMSA_id:013889 AF076248 Desulfosporosinus S5 str. S5. prokMSA_id:013876 AF076526 Desulfosporosinus T2 str. T2. prokMSA_id:013877 AF076527 Desulfosporosinus S10 str. S10. prokMSA_id:013884 AF159120 Desulfosporosinus 5apy str. 5apy. prokMSA_id:063750 AJ493051 Desulfotomaculum auripigmentum strain DSMZ 13351 prokMSA_id:027123 AY050602 clone GOUTB5 prokMSA_id:072325 AY082482 Desulfosporosinus sp. 44a-T3a prokMSA_id:081121 AY214172 clone ZZ9C1 prokMSA_id:081460 AY214191 clone ZZ14C3 2.30.3.2.1.077 OTU 1 seq prokMSA_id:074312 AF414575 clone P3IB-3 2.30.3.2.1.078 OTU 1 seq prokMSA_id:075179 AJ519648 clone Sh765B-AG-14 2.30.3.2.1.079 OTU 1 seq prokMSA_id:077725 AB089019 Clostridiaceae clone:Rs-J36 2.30.3.2.1.080 OTU 1 seq prokMSA_id:077865 AB089014 Clostridiaceae clone:Rs-A28 2.30.3.2.1.081 OTU 1 seq prokMSA_id:077906 AB089013 Clostridiaceae clone:Rs-D61 2.30.3.2.1.082 OTU 1 seq prokMSA_id:078141 AB089015 Clostridiaceae clone:Rs-D04 2.30.3.2.1.083 OTU 1 seq prokMSA_id:078152 AB089018 Clostridiaceae clone:Rs-H17 2.30.3.2.1.084 OTU 1 seq prokMSA_id:078210 AB088985 Clostridiaceae clone:Rs-K66 2.30.3.2.1.085 OTU 1 seq prokMSA_id:078366 AB089017 Clostridiaceae clone:Rs-P50 2.30.3.2.1.086 OTU 1 seq prokMSA_id:078413 AY189650 clone EarCan123 2.30.3.2.1.087 OTU 1 seq prokMSA_id:080400 AY193193 candidate division OD1 clone SRC17 2.30.3.2.1.088 OTU 1 seq prokMSA_id:081303 AB100497 Desulfosporosinus sp. clone: Rs-L07 2.30.3.2.1.089 OTU 1 seq prokMSA_id:081636 AY214189 clone ZZ12AC8 2.30.3.2.1.090 OTU 1 seq prokMSA_id:082915 AB092854 clone:ALU12 2.30.3.2.1.091 OTU 1 seq prokMSA_id:084411 AB092855 clone:ALU13 2.30.3.2.1.092 OTU 1 seq prokMSA_id:085514 AY239582 clone CARB_ER2_2 2.30.3.2.1.093 OTU 1 seq prokMSA_id:086209 AB092898 clone:AHU13 2.30.3.2.1.094 OTU 1 seq prokMSA_id:086338 AB092902 clone:AHU17 2.30.3.2.1.095 OTU 1 seq prokMSA_id:088219 AY191347 delta isolate ODP1176A22X_22_B 2.30.3.2.1.096 OTU 1 seq prokMSA_id:088351 AY327241 clone ZB17 2.30.3.2.1.097 OTU 1 seq prokMSA_id:089151 AY328731 DSSD32 2.30.3.2.1.098 OTU 1 seq prokMSA_id:089517 AY311609 clone YRCA21 2.30.3.2.1.099 OTU 1 seq prokMSA_id:090270 AY221604 soil clone HN4-24 2.30.3.2.1.100 OTU 1 seq prokMSA_id:091012 AY345500 clone W4-B29 2.30.3.2.1.101 OTU 1 seq prokMSA_id:093438 AB118592 Endosymbiont 'TC1' of Trimyema compressum 2.30.3.2.1.102 OTU 1 seq prokMSA_id:094154 AJ565938 Desulfitobacterium dichloroeliminans strain LMG P-21439 2.30.3.2.1.999 poor quality 71 seqs prokMSA_id:052669 AB011317 clone: MUG25 prokMSA_id:034935 AB036495 KH1-2-06 prokMSA_id:023245 AB036496 KH1-2-07 prokMSA_id:074778 AB036502 KH1-5-04 prokMSA_id:032671 AB036503 KH1-5-05 prokMSA_id:028693 AF018007 T2705a prokMSA_id:013874 AF050627 clone WsCH1. prokMSA_id:013885 AF076244 Desulfosporosinus S7 str. S7. prokMSA_id:013886 AF076245 Desulfosporosinus S6 str. S6. prokMSA_id:013887 AF076246 Desulfosporosinus S4 str. S4. prokMSA_id:013875 AF076525 Desulfosporosinus T1 str. T1. prokMSA_id:030683 AF104278 85 prokMSA_id:040806 AF141483 clone CRE-FL69 prokMSA_id:030330 AF427931 clone 6D prokMSA_id:016765 AF447126 clone TDC-412 prokMSA_id:068824 AF469408 clone 33-FL71B00 prokMSA_id:059435 AF540829 clone DP11u10 prokMSA_id:059429 AF540833 clone DP11u3 prokMSA_id:055694 AF546974 clone E5-46-BH1-2/2/99-077 prokMSA_id:024051 AJ278520 firmicute 10-8 prokMSA_id:036685 AJ278521 firmicute 8-7 prokMSA_id:046820 AJ287702 low G+C Gram-positive 358ev prokMSA_id:033238 AJ290979 SHE-133 prokMSA_id:040277 AJ290988 SHE-146 prokMSA_id:041123 AJ290989 SHE-147 prokMSA_id:044710 AJ290990 SHE-148 prokMSA_id:036583 AJ290991 SHE-149 prokMSA_id:030597 AJ290992 SHE-150 prokMSA_id:039095 AJ290993 SHE-151 prokMSA_id:069918 AJ306703 Desulfosporosinus sp. ML1/10-SRB14 strain ML1/10-SRB14 prokMSA_id:025878 AJ306705 Desulfosporosinus sp. ML1/10-SRB3 strain ML1/10-SRB3 prokMSA_id:017328 AJ306707 Desulfosporosinus sp. ML7-SRB7 strain ML7-SRB7 prokMSA_id:048121 AJ306708 Desulfosporosinus sp. ML1/10-SRB10 strain ML1/10-SRB10 prokMSA_id:030761 AJ306709 Desulfosporosinus sp. ML1/10-SRB11 strain ML1/10-SRB11 prokMSA_id:020496 AJ307028 Desulfitobacterium hafniense strain GBFH prokMSA_id:057296 AJ518180 clone Mul1P3-90 prokMSA_id:057290 AJ518186 clone Mul2P1-12 prokMSA_id:057240 AJ518262 clone Mul2P2-80 prokMSA_id:057171 AJ518353 clone Neu2P3-83 prokMSA_id:056974 AJ518602 clone Qui4P2-69 prokMSA_id:049986 AY013655 Banisveld landfill BVB24b prokMSA_id:044056 AY013657 Banisveld landfill BVB36b prokMSA_id:016383 AY038528 firmicute clone CD4B5 prokMSA_id:085345 AY092227 clone BF34 prokMSA_id:083323 AY092344 clone BF40 prokMSA_id:060813 AY118141 Desulfosporosinus sp. clone OR-M1 prokMSA_id:060809 AY118145 firmicute clone OR-M5 prokMSA_id:084083 AY221042 clone CCM11b prokMSA_id:084046 AY223534 clone ATIA-6 prokMSA_id:084385 AY223535 clone ATIA-12 prokMSA_id:085391 AY223537 clone ATIA-3 prokMSA_id:085296 AY231324 clone ER1_24 prokMSA_id:087226 AY261407 clone RFLP U48 prokMSA_id:089323 AY311608 clone YRCA18 prokMSA_id:090248 AY311655 clone YRCC28 prokMSA_id:088372 AY311679 clone YRCD02 prokMSA_id:088782 AY311708 clone YRCD52 prokMSA_id:090591 AY311730 clone YRCE23 prokMSA_id:090328 AY311751 clone YRCE54 prokMSA_id:089612 AY311763 clone YRCF03 prokMSA_id:088960 AY311764 clone YRCF04 prokMSA_id:088882 AY311781 clone YRCF28 prokMSA_id:094027 AY357982 Desulfitobacterium sp. cEV43 prokMSA_id:013891 L28946 Desulfitobacterium dehalogenans str. JW/IU-DC1 DSM 9161 . prokMSA_id:013868 M34417 Desulfosporosinus orientis str. Singapore I NCIMB 8382 . prokMSA_id:036778 U81701 clone vadinDC22 prokMSA_id:013878 U85624 Desulfotomaculum auripigmentum str. ORex. prokMSA_id:013892 X91472 clone A49u. prokMSA_id:013869 X91473 clone A50u. prokMSA_id:042002 Z73437 species isolate Boom-7m-13 prokMSA_id:043355 Z82959 sp. clone group T2A 2.30.3.2.2 DFM.RUMINIS_SUBGROUP 46 seqs 2.30.3.2.2.001 OTU 1 seq prokMSA_id:013918 AF053933 Desulfotomaculum putei SMCC W463. 2.30.3.2.2.002 OTU 1 seq prokMSA_id:013914 U95951 Desulfotomaculum reducens str. MI-1. 2.30.3.2.2.003 OTU 1 seq prokMSA_id:013913 X98407 Desulfotomaculum aeronauticum str. 9 DSM 10349 . 2.30.3.2.2.004 OTU 1 seq prokMSA_id:013912 Y11579 Desulfotomaculum sp. DSM 7440. 2.30.3.2.2.005 OTU 1 seq prokMSA_id:013911 AB026550 Desulfotomaculum nigrificans. 2.30.3.2.2.006 OTU 1 seq prokMSA_id:013906 AJ012602 unnamed organism. 2.30.3.2.2.007 OTU 2 seqs prokMSA_id:013905 AF050587 clone WCHB1-20. prokMSA_id:066938 AJ306756 clone SHA-86 2.30.3.2.2.008 OTU 1 seq prokMSA_id:013904 Y11572 Desulfotomaculum ruminis str. DL DSM 2154 . 2.30.3.2.2.009 OTU 2 seqs prokMSA_id:035107 AJ276557 Desulfotomaculum sp. DEM-KMe98-10 prokMSA_id:020582 AJ276560 Desulfotomaculum sp. DEM-KMe98-6 2.30.3.2.2.010 OTU 2 seqs prokMSA_id:027610 AF364911 clone clB02 prokMSA_id:029529 AF364927 clone clI20 2.30.3.2.2.011 OTU 1 seq prokMSA_id:055903 AF422689 clone d165 2.30.3.2.2.012 OTU 2 seqs prokMSA_id:041028 AF351221 low G+C Gram-positive clone 36-20 prokMSA_id:047304 AF351222 low G+C Gram-positive clone 36-22 2.30.3.2.2.013 OTU 1 seq prokMSA_id:055408 AB074935 low G+C Gram-positive clone:KB13 2.30.3.2.2.014 OTU 1 seq prokMSA_id:060009 AB091323 Pelotomaculum sp. JT 2.30.3.2.2.015 OTU 1 seq prokMSA_id:060013 AB091327 clone:UT-1 2.30.3.2.2.016 OTU 1 seq prokMSA_id:060014 AB091325 clone:JI 2.30.3.2.2.017 OTU 1 seq prokMSA_id:066117 AB074934 low G+C Gram-positive clone:KU26 2.30.3.2.2.018 OTU 1 seq prokMSA_id:066118 AB074933 low G+C Gram-positive clone:KB32 2.30.3.2.2.019 OTU 1 seq prokMSA_id:084187 AB092857 clone:ALU15 2.30.3.2.2.020 OTU 1 seq prokMSA_id:084615 AB092858 clone:ALU16 2.30.3.2.2.021 OTU 1 seq prokMSA_id:086114 AY231350 clone ER2_25 2.30.3.2.2.022 OTU 1 seq prokMSA_id:089170 AY340811 Desulfotomaculum sp. MPNeg1 2.30.3.2.2.023 OTU 1 seq prokMSA_id:090411 AY328596 HOClCi47 2.30.3.2.2.999 poor quality 19 seqs prokMSA_id:073278 A30643 Sulphate-reducing ATCC 19858 region prokMSA_id:013903 AF053929 Desulfotomaculum putei str. TH-11 SMCC W459 . prokMSA_id:013915 AF053930 Desulfotomaculum putei SMCC W460. prokMSA_id:013916 AF053931 Desulfotomaculum putei SMCC W461. prokMSA_id:013917 AF053932 Desulfotomaculum putei SMCC W462. prokMSA_id:013907 AF053934 Desulfotomaculum putei SMCC W464. prokMSA_id:037823 AF361206 firmicute clone SUBT-2 prokMSA_id:071506 AF364924 clone clI29 prokMSA_id:055501 AF529223 Desulfotomaculum sp. ECP-C5 prokMSA_id:089736 AJ577273 Desulfobacillum sp. Ox39 strain Ox39 prokMSA_id:073446 AY062015 Desulfotomaculum sp. SRB-M prokMSA_id:070912 AY062016 Desulfotomaculum sp. SRB-M prokMSA_id:063025 AY122599 clone MW2-66 prokMSA_id:082780 AY271760 low G+C Gram-positive clone 11 prokMSA_id:083709 AY280644 low G+C Gram-positive clone G2-5 prokMSA_id:088600 AY340810 Desulfotomaculum ruminis prokMSA_id:013908 M34418 Desulfotomaculum ruminis str. DL NCIMB 8452 . prokMSA_id:013909 M34418 Desulfotomaculum ruminis str. DL NCIMB 8452 . prokMSA_id:013910 X62176 Desulfotomaculum nigrificans NCIMB 8395 . 2.30.3.2.3 HEL.CHLORUM_SUBGROUP 40 seqs 2.30.3.2.3.001 OTU 1 seq prokMSA_id:013924 AF079102 Heliorestis daurensis str. BT-H1. 2.30.3.2.3.002 OTU 1 seq prokMSA_id:013923 M11212 Heliobacterium chlorum ATCC 35205 . 2.30.3.2.3.003 OTU 26 seqs prokMSA_id:054890 AB004913 Symbiobacterium thermophilum prokMSA_id:031811 AB052368 Symbiobacterium sp. MO87 prokMSA_id:028304 AB052369 Symbiobacterium sp. YK88 prokMSA_id:048078 AB052370 Symbiobacterium sp. YK63 prokMSA_id:029828 AB052371 Symbiobacterium sp. MO16 prokMSA_id:051749 AB052372 Symbiobacterium sp. YK1 prokMSA_id:042519 AB052373 Symbiobacterium sp. MO33 prokMSA_id:047548 AB052374 Symbiobacterium sp. MO17 prokMSA_id:046046 AB052375 Symbiobacterium sp. MO22 prokMSA_id:051828 AB052376 Symbiobacterium sp. YK2 prokMSA_id:048690 AB052377 Symbiobacterium sp. YK66 prokMSA_id:033425 AB052378 Symbiobacterium sp. HN15 prokMSA_id:032767 AB052379 Symbiobacterium sp. MO32 prokMSA_id:029246 AB052380 Symbiobacterium sp. MN128 prokMSA_id:035473 AB052381 Symbiobacterium sp. MO31 prokMSA_id:052147 AB052382 Symbiobacterium sp. YK3 prokMSA_id:032202 AB052384 Symbiobacterium sp. MN124 prokMSA_id:042424 AB052385 Symbiobacterium sp. MN117 prokMSA_id:019552 AB052387 Symbiobacterium sp. HN7 prokMSA_id:038028 AB052388 Symbiobacterium sp. MN5 prokMSA_id:018747 AB052389 Symbiobacterium sp. HN13 prokMSA_id:024885 AB052390 Symbiobacterium sp. MO312 prokMSA_id:025809 AB052391 Symbiobacterium sp. MO313 prokMSA_id:052563 AB052392 Symbiobacterium sp. MO314 prokMSA_id:051026 AB052393 Symbiobacterium sp. MO311 prokMSA_id:042682 AB052394 Symbiobacterium sp. HN3 2.30.3.2.3.004 OTU 1 seq prokMSA_id:073860 AF249678 Heliobacterium sulfidophilum complete 2.30.3.2.3.005 OTU 1 seq prokMSA_id:083853 AY280641 low G+C Gram-positive clone G2-14 2.30.3.2.3.999 poor quality 10 seqs prokMSA_id:074045 AF249679 Heliobacterium undosum prokMSA_id:071716 AF249680 Heliorestis baculata prokMSA_id:013919 L36197 Heliophilum fasciatum str. Tanzania ATCC 51790 . prokMSA_id:013925 L36198 Heliobacterium gestii str. Chainat ATCC 43375 . prokMSA_id:013921 L36199 Heliobacillus mobilis ATCC 43427 . prokMSA_id:013928 L36200 Heliobacterium modesticaldum str. Ice1. prokMSA_id:013920 U14557 Heliophilum fasciatum str. Tanzania ATCC 51790 . prokMSA_id:013926 U14558 Heliobacterium gestii str. Chainat ATCC 43375 . prokMSA_id:013927 U14559 Heliobacterium modesticaldum str. Ice1. prokMSA_id:013922 U14560 Heliobacillus mobilis ATCC 43427 . 2.30.3.3 CLOSTRIDIUM_STRAIN_DMC 3 seqs 2.30.3.3.001 OTU 1 seq prokMSA_id:013929 X86690 Clostridium sp. str. DMC. 2.30.3.3.002 OTU 1 seq prokMSA_id:086590 AB092859 clone:ALU17 2.30.3.3.999 poor quality 1 seq prokMSA_id:029162 U81693 clone vadinBE65 2.30.4 EUBACTERIUM_AND_RELATIVES 2186 seqs 2.30.4.1 C.COCCOIDES_GROUP 1596 seqs 2.30.4.1.1 C.XYLANOLYTICUM_SUBGROUP 370 seqs 2.30.4.1.1.001 OTU 1 seq prokMSA_id:013959 AF001769 clone RF38. 2.30.4.1.1.002 OTU 16 seqs prokMSA_id:070424 AB075772 Clostridium sphenoides prokMSA_id:013963 AF067965 Clostridium methoxybenzovorans str. SR3 DSM 12182. prokMSA_id:088374 AF443594 Clostridium sp. ArC5 prokMSA_id:072750 AF479585 Clostridium sp. HAAP-2 prokMSA_id:085783 AF520990 Clostridium sp. TDO prokMSA_id:017743 AJ295659 Clostridium celerecrescens clone IrT-JG1-12 prokMSA_id:048944 AJ295660 Clostridium celerecrescens clone IrT-JG1-22 prokMSA_id:039305 AJ404679 ZF1 prokMSA_id:085342 AY221993 Clostridium sp. CITR8 prokMSA_id:013964 X71848 Clostridium celerecrescens DSM 5628 . prokMSA_id:013957 X73449 Clostridium sphenoides ATCC 19403 . prokMSA_id:013961 Y10029 Clostridium sp. str. DR6B. prokMSA_id:013971 Y10030 Clostridium sp. str. DR7. prokMSA_id:013958 Y11568 Desulfotomaculum guttoideum str. 50 DSM 4024 . prokMSA_id:026602 Y18184 Clostridium indolis strain DSM 755 prokMSA_id:052311 Y18185 Clostridium saccharolyticum strain DSM 2544 2.30.4.1.1.003 OTU 2 seqs prokMSA_id:013955 AF153861 clone adhufec13.25. prokMSA_id:090276 AY328370 inhufecA-44 2.30.4.1.1.004 OTU 5 seqs prokMSA_id:090481 AB113709 clone:OAB22 prokMSA_id:048412 AF349661 Butyrivibrio fibrisolvens strain OB237 prokMSA_id:048290 AF349662 Butyrivibrio fibrisolvens strain OB247 prokMSA_id:074571 AF349663 Butyrivibrio fibrisolvens strain OB249 prokMSA_id:013952 U77341 Butyrivibrio fibrisolvens str. OB251. 2.30.4.1.1.005 OTU 1 seq prokMSA_id:013951 AF084837 TW2 str. TW2. 2.30.4.1.1.008 OTU 3 seqs prokMSA_id:088444 AB113691 clone:OAB4 prokMSA_id:089628 AB113722 clone:OAB35 prokMSA_id:013947 X89973 Butyrivibrio fibrisolvens NCDO 2432. 2.30.4.1.1.010 OTU 1 seq prokMSA_id:013945 X89971 Butyrivibrio fibrisolvens NCDO 2222. 2.30.4.1.1.012 OTU 1 seq prokMSA_id:013943 AF018566 clone 30-2. 2.30.4.1.1.013 OTU 1 seq prokMSA_id:013942 AF018556 clone JW28. 2.30.4.1.1.014 OTU 1 seq prokMSA_id:013941 AF018545 clone JW5. 2.30.4.1.1.015 OTU 1 seq prokMSA_id:013940 AF001772 clone RFP4. 2.30.4.1.1.016 OTU 1 seq prokMSA_id:013939 AF001728 clone RCP17. 2.30.4.1.1.017 OTU 2 seqs prokMSA_id:026280 AB034190 Rumen RC7r-54 prokMSA_id:013936 AF001700 clone RC7. 2.30.4.1.1.018 OTU 16 seqs prokMSA_id:013944 AB009172 clone RFN13. prokMSA_id:018393 AB045743 fiber-attaching rumen SY10 prokMSA_id:089779 AB113683 clone:AAB47 prokMSA_id:090256 AB113695 clone:OAB8 prokMSA_id:090575 AB113701 clone:OAB14 prokMSA_id:088920 AB113733 clone:OAB47 prokMSA_id:013935 AF001696 clone RC3. prokMSA_id:013937 AF001712 clone RC22. prokMSA_id:013938 AF001726 clone RCP5. prokMSA_id:013934 AF125902 Butyrivibrio fibrisolvens str. H17cSA. prokMSA_id:041384 AJ428553 Butyrivibrio hungatei strain JK 615 prokMSA_id:098638 AY178635 Butyrivibrio hungatei strain Su6 prokMSA_id:013933 U37378 Clostridium proteoclasticum str. B316 ATCC 51982 . prokMSA_id:013946 X89972 Butyrivibrio fibrisolvens NCDO 2398. prokMSA_id:013949 X89975 Butyrivibrio fibrisolvens NCDO 2435. prokMSA_id:013950 X89976 Butyrivibrio fibrisolvens str. Bu 43. 2.30.4.1.1.019 OTU 1 seq prokMSA_id:013932 AF001776 clone RFP18. 2.30.4.1.1.020 OTU 4 seqs prokMSA_id:037898 AF396926 Butyrivibrio fibrisolvens strain C211 prokMSA_id:046567 AF396927 Butyrivibrio fibrisolvens strain WV1 prokMSA_id:013930 U41172 Butyrivibrio fibrisolvens str. D1. prokMSA_id:013931 X89970 Butyrivibrio fibrisolvens NCDO 2221 . 2.30.4.1.1.021 OTU 2 seqs prokMSA_id:016853 AF371556 clone p-2593-9F5 prokMSA_id:020439 AF371557 clone p-202-o5 2.30.4.1.1.022 OTU 1 seq prokMSA_id:017500 AJ408215 equine intestinal sp. PL07 clone PL07 2.30.4.1.1.023 OTU 1 seq prokMSA_id:018619 AF371567 clone p-662-a5 2.30.4.1.1.024 OTU 2 seqs prokMSA_id:019529 AJ315486 isolate HuCC34 prokMSA_id:090287 AY328368 inhufecA-34 2.30.4.1.1.026 OTU 2 seqs prokMSA_id:085225 AF499908 clone ABLCf20 prokMSA_id:020024 AJ270472 Butyrate-producing T2-145 2.30.4.1.1.027 OTU 4 seqs prokMSA_id:033837 AF371661 clone p-59-a5 prokMSA_id:028767 AF371662 clone p-373-a3 prokMSA_id:054048 AF371663 clone p-1676-b3 prokMSA_id:020244 AJ270485 Butyrate-producing A2-175 2.30.4.1.1.028 OTU 1 seq prokMSA_id:020478 AB056636 fiber-attaching rumen clone:SY20 2.30.4.1.1.029 OTU 1 seq prokMSA_id:020690 AB056635 fiber-attaching rumen clone:SY19 2.30.4.1.1.030 OTU 1 seq prokMSA_id:020799 AF371569 clone p-2529-18B5 2.30.4.1.1.031 OTU 3 seqs prokMSA_id:020886 AJ408039 equine intestinal sp. CL04 clone CL04 prokMSA_id:023089 AJ408078 equine intestinal sp. CW08 clone CW08 prokMSA_id:029915 AJ408131 equine intestinal sp. DW06 clone DW06 2.30.4.1.1.032 OTU 1 seq prokMSA_id:021065 AJ408158 equine intestinal sp. ML12 clone ML12 2.30.4.1.1.033 OTU 2 seqs prokMSA_id:038154 AJ408092 equine intestinal sp. DL04 clone DL04 prokMSA_id:021714 AJ408192 equine intestinal sp. MW05 clone MW05 2.30.4.1.1.035 OTU 5 seqs prokMSA_id:023380 AB034009 rumen 3C0d-9 prokMSA_id:019729 AB034018 rumen 4C0d-5 prokMSA_id:053486 AB034057 rumen 4C3d-2 prokMSA_id:021995 AB034058 rumen 5C3d-13 prokMSA_id:027777 AB034059 rumen 6C3d-11 2.30.4.1.1.036 OTU 1 seq prokMSA_id:022771 AF371554 clone p-214-o5 2.30.4.1.1.037 OTU 1 seq prokMSA_id:024175 AF371944 clone p-5263-4Wb5 2.30.4.1.1.038 OTU 1 seq prokMSA_id:024389 AB056634 fiber-attaching rumen clone:SY16 2.30.4.1.1.040 OTU 1 seq prokMSA_id:025210 AF371565 clone p-2489-18B5 2.30.4.1.1.041 OTU 9 seqs prokMSA_id:013986 AJ002591 Clostridium sp. str. Lip1 DSM 10643. prokMSA_id:025309 AJ400244 clone L7-11 prokMSA_id:034591 AJ400248 clone L7-20 prokMSA_id:083226 AJ508452 Clostridium boltei strain 16351 prokMSA_id:091421 AY338299 clone BREC_21 prokMSA_id:091047 AY338300 clone BREC_99 prokMSA_id:091306 AY338339 clone BREC_74 prokMSA_id:013979 M59089 Clostridium clostridiiforme ATCC 25537 . prokMSA_id:013985 Y10028 Clostridium sp. str. DR6A. 2.30.4.1.1.042 OTU 1 seq prokMSA_id:028123 AF429376 CCAJG151 2.30.4.1.1.043 OTU 1 seq prokMSA_id:028175 AB062774 clone:BCf1-20 2.30.4.1.1.044 OTU 1 seq prokMSA_id:028412 AJ295658 Clostridium sp. IrT-JG1-67 2.30.4.1.1.045 OTU 1 seq prokMSA_id:028618 AF287772 Firmicutes sp. oral clone BB124 2.30.4.1.1.046 OTU 1 seq prokMSA_id:029237 AJ408105 equine intestinal sp. DL18 clone DL18 2.30.4.1.1.047 OTU 1 seq prokMSA_id:029965 AJ428552 Clostridium proteoclasticum strain UC 142 2.30.4.1.1.048 OTU 1 seq prokMSA_id:030277 AJ408162 equine intestinal sp. ML16 clone ML16 2.30.4.1.1.049 OTU 1 seq prokMSA_id:030587 AF371572 clone p-1028-a5 2.30.4.1.1.050 OTU 1 seq prokMSA_id:031499 AJ400251 clone L7-7 2.30.4.1.1.051 OTU 1 seq prokMSA_id:032108 AJ408047 equine intestinal sp. CL12 clone CL12 2.30.4.1.1.052 OTU 2 seqs prokMSA_id:046138 AJ408145 equine intestinal sp. DW20 clone DW20 prokMSA_id:032223 AJ408201 equine intestinal sp. MW14 clone MW14 2.30.4.1.1.053 OTU 3 seqs prokMSA_id:032267 AF201983 human oral A34 prokMSA_id:049856 AF385510 sp. oral clone DO016 prokMSA_id:086715 AY278618 Lachnospiraceae genomosp. C1 2.30.4.1.1.054 OTU 2 seqs prokMSA_id:033539 AJ400247 clone L7-1 prokMSA_id:041522 AJ400253 clone L7-15 2.30.4.1.1.055 OTU 1 seq prokMSA_id:033545 AJ408136 equine intestinal sp. DW11 clone DW11 2.30.4.1.1.056 OTU 1 seq prokMSA_id:034632 AJ408044 equine intestinal sp. CL09 clone CL09 2.30.4.1.1.057 OTU 1 seq prokMSA_id:035993 AJ408059 equine intestinal sp. CL25 clone CL25 2.30.4.1.1.058 OTU 1 seq prokMSA_id:036066 AB056648 fiber-attaching rumen clone:SY9 2.30.4.1.1.059 OTU 1 seq prokMSA_id:036330 AF371561 clone p-195-o5 2.30.4.1.1.060 OTU 3 seqs prokMSA_id:036565 AB034001 rumen 3C0d-1 prokMSA_id:052499 AB034049 rumen 5C0d-19 prokMSA_id:013982 AF018560 clone 12-74. 2.30.4.1.1.061 OTU 1 seq prokMSA_id:037723 AB034052 rumen 3C3d-17 2.30.4.1.1.062 OTU 1 seq prokMSA_id:037999 AJ408213 equine intestinal sp. PL05 clone PL05 2.30.4.1.1.063 OTU 2 seqs prokMSA_id:038358 AB034110 rumen 3C28d-6 prokMSA_id:045716 AB034111 rumen 4C28d-22 2.30.4.1.1.064 OTU 1 seq prokMSA_id:040768 AF287768 Butyrivibrio sp. oral clone DA074 2.30.4.1.1.065 OTU 1 seq prokMSA_id:041158 AB034053 rumen 3C3d-19 2.30.4.1.1.066 OTU 2 seqs prokMSA_id:052163 AB034006 rumen 3C0d-6 prokMSA_id:042145 AB034043 rumen 5C0d-10 2.30.4.1.1.067 OTU 1 seq prokMSA_id:042492 AF371590 clone p-228-o5 2.30.4.1.1.068 OTU 1 seq prokMSA_id:043700 AB062773 clone:BCf1-16 2.30.4.1.1.069 OTU 1 seq prokMSA_id:043789 AB038359 Coprococcus catus 2.30.4.1.1.070 OTU 1 seq prokMSA_id:044923 AF371578 clone p-619-a5 2.30.4.1.1.071 OTU 1 seq prokMSA_id:045129 AF376407 ckncm174-F3M.1E3 2.30.4.1.1.072 OTU 2 seqs prokMSA_id:013969 AF001734 clone RF1. prokMSA_id:045397 AF001744 rumen RF12 2.30.4.1.1.073 OTU 1 seq prokMSA_id:045632 AJ408237 equine intestinal sp. PL30 clone PL30 2.30.4.1.1.074 OTU 1 seq prokMSA_id:047954 AF132268 adhufec405 2.30.4.1.1.075 OTU 2 seqs prokMSA_id:070198 AF287770 Firmicutes sp. oral strain FTB41 prokMSA_id:055615 AF481222 Lachnospiraceae oral clone MCE10_236 E5 2.30.4.1.1.076 OTU 1 seq prokMSA_id:048559 AF153860 adhufec66.25 2.30.4.1.1.077 OTU 1 seq prokMSA_id:048768 AB034032 rumen 4C0d-19 2.30.4.1.1.078 OTU 1 seq prokMSA_id:048871 AJ408083 equine intestinal sp. CW14 clone CW14 2.30.4.1.1.079 OTU 1 seq prokMSA_id:049346 AJ408091 equine intestinal sp. DL03 clone DL03 2.30.4.1.1.080 OTU 1 seq prokMSA_id:049916 AF371941 clone p-4459-6Wb3 2.30.4.1.1.081 OTU 1 seq prokMSA_id:050166 AF371583 clone p-389-o3 2.30.4.1.1.082 OTU 1 seq prokMSA_id:050499 AF371579 clone p-4162-6Wa5 2.30.4.1.1.083 OTU 1 seq prokMSA_id:051880 AJ400256 clone L10-4 2.30.4.1.1.085 OTU 1 seq prokMSA_id:052933 AF287773 Firmicutes sp. oral clone CK030 2.30.4.1.1.086 OTU 1 seq prokMSA_id:053640 AF371588 clone p-2592-9F5 2.30.4.1.1.087 OTU 1 seq prokMSA_id:061071 AF530324 clone cadhufec19d09yvb 2.30.4.1.1.088 OTU 1 seq prokMSA_id:068844 AF371584 clone p-2876-6C5 2.30.4.1.1.089 OTU 1 seq prokMSA_id:013960 AB009177 clone RFN18. 2.30.4.1.1.091 OTU 1 seq prokMSA_id:013966 AF001710 clone RC20. 2.30.4.1.1.092 OTU 1 seq prokMSA_id:013967 AF001717 clone RC28. 2.30.4.1.1.093 OTU 1 seq prokMSA_id:013968 AF001727 clone RCP10. 2.30.4.1.1.094 OTU 1 seq prokMSA_id:013970 AB009229 clone RFN81. 2.30.4.1.1.095 OTU 8 seqs prokMSA_id:096459 AB114227 Clostridium sp. B907-1 prokMSA_id:095239 AB114228 Clostridium sp. U201 prokMSA_id:098149 AB114230 Clostridium sp. Kas203-2 prokMSA_id:095658 AB114231 Clostridium sp. Kas401-4 prokMSA_id:052289 AF092549 Clostridium algidixylanolyticum prokMSA_id:013973 X71855 Clostridium xylanolyticum ATCC 49623 . prokMSA_id:013965 X76163 Clostridium aerotolerans DSM 5434 . prokMSA_id:013972 X76739 Clostridium xylanolyticum DSM 6555 . 2.30.4.1.1.096 OTU 1 seq prokMSA_id:013974 AF001724 clone RC39. 2.30.4.1.1.097 OTU 1 seq prokMSA_id:013976 AB009185 clone RFN27. 2.30.4.1.1.098 OTU 1 seq prokMSA_id:013977 AF153852 clone adhufec49.25. 2.30.4.1.1.099 OTU 1 seq prokMSA_id:013981 AF018554 clone JW25. 2.30.4.1.1.100 OTU 1 seq prokMSA_id:013983 AF018563 clone 12-116. 2.30.4.1.1.101 OTU 1 seq prokMSA_id:013984 AF018565 clone 12-128. 2.30.4.1.1.102 OTU 1 seq prokMSA_id:069988 AF371577 clone p-386-o3 2.30.4.1.1.103 OTU 1 seq prokMSA_id:075199 AY154596 earthworm cast clone c240 2.30.4.1.1.104 OTU 1 seq prokMSA_id:077702 AB088989 clone:Rs-F92 2.30.4.1.1.105 OTU 1 seq prokMSA_id:077867 AB088950 clone:Rs-B88 2.30.4.1.1.106 OTU 2 seqs prokMSA_id:079158 AY187890 clone GG13 prokMSA_id:079513 AY187891 clone GG15 2.30.4.1.1.107 OTU 1 seq prokMSA_id:079804 AJ538057 Gram-positive clone OF38 2.30.4.1.1.108 OTU 1 seq prokMSA_id:083271 AF499906 clone ABLCf11 2.30.4.1.1.109 OTU 1 seq prokMSA_id:086202 AY231322 clone ER1_22 2.30.4.1.1.110 OTU 2 seqs prokMSA_id:090158 AY328365 inhufecA-29 prokMSA_id:088828 AY328369 inhufecA-43 2.30.4.1.1.111 OTU 1 seq prokMSA_id:088925 AB113679 clone:AAB43 2.30.4.1.1.112 OTU 1 seq prokMSA_id:088953 AB113684 clone:AAB49 2.30.4.1.1.113 OTU 2 seqs prokMSA_id:089091 AY328366 inhufecA-32 prokMSA_id:089188 AY328367 inhufecA-33 2.30.4.1.1.114 OTU 1 seq prokMSA_id:089106 AY311645 clone YRCC07 2.30.4.1.1.115 OTU 1 seq prokMSA_id:089295 AY315338 rumen clone JRCJ71 2.30.4.1.1.117 OTU 7 seqs prokMSA_id:033850 AF132269 adhufec406 prokMSA_id:049141 AF371568 clone p-355-a3 prokMSA_id:024781 AJ409005 clone HuCB40 prokMSA_id:089933 AY328363 inhufecA-26 prokMSA_id:093079 AY343186 clone REC6M_75 prokMSA_id:093157 AY343213 clone REC6M_27 prokMSA_id:092038 AY343214 clone REC6M_18 2.30.4.1.1.118 OTU 1 seq prokMSA_id:089945 AY311722 clone YRCE13 2.30.4.1.1.119 OTU 1 seq prokMSA_id:091486 AY179349 clone WYSK 0002 2.30.4.1.1.120 OTU 1 seq prokMSA_id:092512 AY349374 sp. oral clone GI038 2.30.4.1.1.121 OTU 1 seq prokMSA_id:093120 AY343136 clone REC1M_75 2.30.4.1.1.122 OTU 1 seq prokMSA_id:093123 AY343130 clone REC1M_28 2.30.4.1.1.123 OTU 1 seq prokMSA_id:094298 AB120810 Gram-positive clone:MC41C02 2.30.4.1.1.124 OTU 1 seq prokMSA_id:094447 AB120807 Gram-positive clone:MC41C04 2.30.4.1.1.125 OTU 1 seq prokMSA_id:094535 AB120787 Gram-positive clone:MC41D04 2.30.4.1.1.126 OTU 1 seq prokMSA_id:094718 AJ318527 Ruminococcus sp. I-52 isolate I-52 2.30.4.1.1.127 OTU 1 seq prokMSA_id:094783 AB120803 Gram-positive clone:MC41B01 2.30.4.1.1.128 OTU 1 seq prokMSA_id:094829 AB120809 Gram-positive clone:MC41A03 2.30.4.1.1.129 OTU 1 seq prokMSA_id:095045 AY368595 clone nc-07 2.30.4.1.1.130 OTU 1 seq prokMSA_id:095160 AB120802 Gram-positive clone:MC41D06 2.30.4.1.1.131 OTU 1 seq prokMSA_id:096194 AY239428 clone rc3-41 complete 2.30.4.1.1.132 OTU 1 seq prokMSA_id:096321 AY160822 clone COB P3-28 2.30.4.1.1.133 OTU 1 seq prokMSA_id:097871 AB114225 Clostridium sp. B556-1 2.30.4.1.1.999 poor quality 159 seqs prokMSA_id:049760 AB028371 oral AP60-12 prokMSA_id:039578 AB028446 oral RP55-58 prokMSA_id:062222 AB064711 firmicute clone:NB2A1 prokMSA_id:055239 AB064712 firmicute clone:NS2G4 prokMSA_id:062180 AB064769 firmicute clone:NS2G11 prokMSA_id:062179 AB064770 firmicute clone:NS4B5 prokMSA_id:062178 AB064771 firmicute clone:NO78 prokMSA_id:062177 AB064772 firmicute clone:NO59 prokMSA_id:062173 AB064776 firmicute clone:NB4F12 prokMSA_id:062172 AB064777 firmicute clone:NO33 prokMSA_id:062085 AB064880 firmicute clone:NS4A6 prokMSA_id:062069 AB064903 Human intestinal firmicute CO2 prokMSA_id:065295 AB075633 chicken cecal clone:2G8 prokMSA_id:065289 AB075639 chicken cecal clone:1H3 prokMSA_id:065279 AB075652 chicken cecal clone:2F5 prokMSA_id:065278 AB075653 chicken cecal clone:1G7 prokMSA_id:065277 AB075656 chicken cecal clone:2B2 prokMSA_id:058712 AB080871 human intestinal clone:JW1D8 prokMSA_id:058711 AB080872 human intestinal clone:JW1C1 prokMSA_id:058709 AB080873 human intestinal clone:JW1H4 prokMSA_id:058710 AB080874 human intestinal clone:JW1A2 prokMSA_id:087712 AB099736 clone: OLDA-E8 prokMSA_id:087728 AB099737 clone: OLDA-H6 prokMSA_id:098542 AB114226 Clostridium sp. Sukashi-1 prokMSA_id:095518 AB114229 Clostridium sp. U101-b prokMSA_id:094907 AB120782 Gram-positive clone:MC41G03 prokMSA_id:094430 AB120784 Gram-positive clone:MC42C11 prokMSA_id:095053 AB120785 Gram-positive clone:MC81C04 prokMSA_id:094730 AB120786 Gram-positive clone:MC41G03 prokMSA_id:094640 AB120798 Gram-positive clone:MC41F02 prokMSA_id:094865 AB120799 Gram-positive clone:MC82A12 prokMSA_id:094923 AB120801 Gram-positive clone:MC42F11 prokMSA_id:094792 AB120804 Gram-positive clone:MC82A07 prokMSA_id:094678 AB120805 Gram-positive clone:MC41D03 prokMSA_id:094570 AB120806 Gram-positive clone:MC81A04 prokMSA_id:013980 AF018548 clone JW13. prokMSA_id:013975 AF018552 clone JW23. prokMSA_id:040785 AF018561 rumen 12-76 prokMSA_id:031485 AF070465 Mixed culture ruminal PAD160 prokMSA_id:036552 AF070469 Mixed culture ruminal PAD193 prokMSA_id:070058 AF071192 Mixed culture ruminal PAD196 prokMSA_id:046693 AF146699 Clostridium sp. LP1 prokMSA_id:031549 AF153851 adhufec43.25 prokMSA_id:045938 AF293903 rumen clone 1 prokMSA_id:021545 AF293941 rumen clone 39 prokMSA_id:073491 AF365547 clone BT49MF4BA7 prokMSA_id:068884 AF376143 ckncm239-m5e10 prokMSA_id:037088 AF376148 ckncm244-2m5g8 prokMSA_id:042765 AF376151 ckncm247-c5f8 prokMSA_id:044912 AF376236 ckncm003-DS7 prokMSA_id:028411 AF376241 ckncm008-DC3 prokMSA_id:032308 AF376242 ckncm009-DS9 prokMSA_id:072892 AF376243 ckncm010-DC8 prokMSA_id:074868 AF376252 ckncm019-DS11 prokMSA_id:036511 AF376256 ckncm023-F4M.9 prokMSA_id:073196 AF376257 ckncm024-F3M.10 prokMSA_id:073204 AF376264 ckncm031-B1ds.2 prokMSA_id:017262 AF376265 ckncm032-C1.2 prokMSA_id:071665 AF376267 ckncm034-F4M.11 prokMSA_id:053250 AF376268 ckncm035-B5sc.7 prokMSA_id:020224 AF376290 ckncm057-MC.C11 prokMSA_id:071337 AF376291 ckncm058-C3.6 prokMSA_id:070133 AF376294 ckncm061-F3M.5 prokMSA_id:069784 AF376295 ckncm062-F1M.11 prokMSA_id:027716 AF376298 ckncm065-F1M.12 prokMSA_id:038134 AF376356 ckncm123-C21.F4 prokMSA_id:034383 AF376367 ckncm134-F1M.1C1 prokMSA_id:016545 AF376368 ckncm135-F1M.1C12 prokMSA_id:042436 AF376378 ckncm145-F1M.1E5 prokMSA_id:037078 AF376382 ckncm149-F1M.1G11 prokMSA_id:019565 AF376385 ckncm152-F1M.1G6 prokMSA_id:022805 AF376410 ckncm177-F3M.2F1 prokMSA_id:016317 AF376465 ckncm232-F4M.2G4 prokMSA_id:052195 AF388321 clone Ac58 prokMSA_id:031330 AF400102 Tb3-T prokMSA_id:051273 AF427921 clone 9G prokMSA_id:018410 AF442014 firmicute clone CD12H11 prokMSA_id:017404 AF445260 Swine manure pit PPC14 prokMSA_id:048324 AF445261 Swine manure pit PPC12B prokMSA_id:043670 AF445262 Swine manure pit PPC12A prokMSA_id:027248 AF447145 clone TDC-C1 prokMSA_id:045272 AF450010 Swine manure pit PPC104 prokMSA_id:019893 AF473923 firmicute 128-3 prokMSA_id:085326 AF499870 clone LCTI22 prokMSA_id:083563 AF499907 clone ABLCf44 prokMSA_id:055300 AF530376 clone cadhufec56c10 prokMSA_id:021418 AJ241719 microorganism clone Cal1 prokMSA_id:035900 AJ241769 microorganism clone Cow23 prokMSA_id:028935 AJ304797 Butyrivibrio fibrisolvens isolate UC 142 prokMSA_id:048744 AJ304798 Butyrivibrio fibrisolvens isolate X2D62 prokMSA_id:052363 AJ304799 Butyrivibrio fibrisolvens isolate JK 615 prokMSA_id:034008 AJ304800 Butyrivibrio fibrisolvens isolate JK 669 prokMSA_id:072621 AJ404683 MK1-309 prokMSA_id:048061 AJ418957 clone k020 prokMSA_id:044795 AJ418961 clone k033 prokMSA_id:050257 AJ418971 clone k054 prokMSA_id:045126 AJ418979 clone k064 prokMSA_id:020313 AJ419045 clone kl096 prokMSA_id:017415 AJ419084 clone kl316 prokMSA_id:041327 AY006519 rumen prokMSA_id:026488 AY006526 rumen prokMSA_id:019197 AY006537 rumen prokMSA_id:040467 AY006555 rumen prokMSA_id:018802 AY006566 rumen prokMSA_id:017668 AY006571 rumen prokMSA_id:045528 AY006601 rumen prokMSA_id:030981 AY006603 rumen prokMSA_id:043816 AY006661 rumen prokMSA_id:027147 AY006678 rumen prokMSA_id:030015 AY006715 rumen prokMSA_id:034001 AY006743 rumen prokMSA_id:025290 AY006763 rumen prokMSA_id:029612 AY006766 rumen prokMSA_id:017930 AY006789 rumen prokMSA_id:021469 AY006797 rumen prokMSA_id:033414 AY006836 rumen prokMSA_id:034438 AY006841 rumen prokMSA_id:020392 AY006907 rumen prokMSA_id:043358 AY006911 rumen prokMSA_id:031057 AY006914 rumen prokMSA_id:035752 AY006929 rumen prokMSA_id:095553 AY239421 clone rc1-13 complete prokMSA_id:096581 AY239429 clone rc4-10 complete prokMSA_id:086358 AY256587 DGGE band A2-7 prokMSA_id:085083 AY256589 DGGE band S5-4 prokMSA_id:083729 AY256590 DGGE band S2-9 prokMSA_id:088616 AY311605 clone YRCA09 prokMSA_id:089398 AY311612 clone YRCA25 prokMSA_id:088984 AY311633 clone YRCB49 prokMSA_id:089838 AY311647 clone YRCC11 prokMSA_id:088633 AY311657 clone YRCC31 prokMSA_id:089892 AY311658 clone YRCC32 prokMSA_id:089020 AY311660 clone YRCC34 prokMSA_id:090770 AY311661 clone YRCC35 prokMSA_id:090427 AY311664 clone YRCC43 prokMSA_id:088672 AY311671 clone YRCC51 prokMSA_id:089203 AY311691 clone YRCD26 prokMSA_id:088533 AY311694 clone YRCD32 prokMSA_id:090626 AY311700 clone YRCD40 prokMSA_id:088284 AY311703 clone YRCD45 prokMSA_id:089227 AY311707 clone YRCD51 prokMSA_id:089639 AY311714 clone YRCE01 prokMSA_id:089439 AY311752 clone YRCE55 prokMSA_id:088402 AY311765 clone YRCF05 prokMSA_id:090637 AY311780 clone YRCF24 prokMSA_id:088162 AY315323 rumen clone JRCJ28 prokMSA_id:088893 AY315380 rumen clone JRCK63 prokMSA_id:094610 AY368594 clone nc-06 prokMSA_id:013953 L04165 Clostridium aminophilum str. F VPI 14602 . prokMSA_id:013954 M59112 Clostridium symbiosum ATCC 14940 . prokMSA_id:037067 U65719 Mastodon intestinal AN-22-6 prokMSA_id:032626 U81657 clone vadinBA29 prokMSA_id:041008 U81664 clone vadinBA19 prokMSA_id:017765 U81695 clone vadinBE55 prokMSA_id:074593 U81737 clone vadinHA67 prokMSA_id:013956 X66000 Clostridium symbiosum. prokMSA_id:013978 X76747 Clostridium sp. str. FS 41 DSM 6877. prokMSA_id:013948 X89974 Butyrivibrio fibrisolvens NCDO 2434. prokMSA_id:013962 Y12289 Clostridium sp. str. LIP5. 2.30.4.1.2 RUC.HANSENII_SUBGROUP 219 seqs 2.30.4.1.2.001 OTU 4 seqs prokMSA_id:061030 AF530369 clone cadhufec129c10 prokMSA_id:016475 AJ408999 clone HuCB25 prokMSA_id:091647 AY338305 clone BREC_9 prokMSA_id:091509 AY338323 clone BREC_23 2.30.4.1.2.002 OTU 3 seqs prokMSA_id:047431 AB034112 rumen 4C28d-9 prokMSA_id:029937 AB034113 rumen 4C28d-24 prokMSA_id:017160 AF371551 clone p-2794-24E5 2.30.4.1.2.003 OTU 1 seq prokMSA_id:018024 AJ408191 equine intestinal sp. MW04 clone MW04 2.30.4.1.2.006 OTU 1 seq prokMSA_id:018897 AF376397 ckncm164-F3M.1B7 2.30.4.1.2.007 OTU 1 seq prokMSA_id:020389 AJ408097 equine intestinal sp. DL09 clone DL09 2.30.4.1.2.008 OTU 1 seq prokMSA_id:020783 AJ408243 equine intestinal sp. PL36 clone PL36 2.30.4.1.2.009 OTU 1 seq prokMSA_id:022899 AJ133124 Ruminococcus sp. bln9 2.30.4.1.2.010 OTU 1 seq prokMSA_id:022923 AF371547 clone p-2465-18B5 2.30.4.1.2.011 OTU 1 seq prokMSA_id:073450 AF385573 sp. oral clone EI074 2.30.4.1.2.012 OTU 2 seqs prokMSA_id:041867 AF202264 Syntrophococcus sucromutans prokMSA_id:025317 Y18191 Syntrophococcus sucromutans strain DSM 3224 2.30.4.1.2.013 OTU 1 seq prokMSA_id:025469 AF132270 adhufec40 2.30.4.1.2.014 OTU 1 seq prokMSA_id:026513 AJ408057 equine intestinal sp. CL23 clone CL23 2.30.4.1.2.015 OTU 1 seq prokMSA_id:027207 AF376381 ckncm148-F1M.2F9 2.30.4.1.2.016 OTU 1 seq prokMSA_id:028218 AJ408961 clone HuCA5 2.30.4.1.2.017 OTU 1 seq prokMSA_id:028275 AJ408050 equine intestinal sp. CL15 clone CL15 2.30.4.1.2.018 OTU 1 seq prokMSA_id:028901 AB034056 rumen 4C3d-8 2.30.4.1.2.019 OTU 1 seq prokMSA_id:029867 AJ408974 clone HuCA22 2.30.4.1.2.020 OTU 1 seq prokMSA_id:030215 AJ408183 equine intestinal sp. ML37 clone ML37 2.30.4.1.2.023 OTU 1 seq prokMSA_id:030968 AB034055 rumen 6C3d-13 2.30.4.1.2.024 OTU 1 seq prokMSA_id:031735 AF371548 clone p-192-o5 2.30.4.1.2.026 OTU 1 seq prokMSA_id:035015 AJ408233 equine intestinal sp. PL26 clone PL26 2.30.4.1.2.027 OTU 1 seq prokMSA_id:035055 AJ408253 equine intestinal sp. PW07 clone PW07 2.30.4.1.2.028 OTU 1 seq prokMSA_id:035314 AJ408120 equine intestinal sp. DL33 clone DL33 2.30.4.1.2.033 OTU 1 seq prokMSA_id:036624 AF371555 clone p-188-o5 2.30.4.1.2.034 OTU 1 seq prokMSA_id:036647 AF371576 clone p-247-o5 2.30.4.1.2.036 OTU 11 seqs prokMSA_id:036551 AF132244 adhufec172 prokMSA_id:073388 AF357567 mpn-isolate group 19 prokMSA_id:040507 AF371543 clone p-1977-s962-5 prokMSA_id:038418 AF371544 clone p-60-a5 prokMSA_id:061089 AF530301 clone cadhufec028h7 prokMSA_id:081645 AY169411 Ruminococcus obeum clone 1-4 prokMSA_id:092205 AY343314 clone DONOR_30 prokMSA_id:092538 AY343315 clone DONOR_31 prokMSA_id:097021 AY388453 clone Adhuleft84 prokMSA_id:013993 L76601 Ruminococcus obeum ATCC 29174 . prokMSA_id:013989 X85101 Ruminococcus obeum. 2.30.4.1.2.037 OTU 1 seq prokMSA_id:038657 AJ270486 Butyrate-producing L2-10 2.30.4.1.2.038 OTU 1 seq prokMSA_id:039208 AB056673 equine intestinal clone:YT15 2.30.4.1.2.039 OTU 1 seq prokMSA_id:039770 AJ400250 clone L7-6 2.30.4.1.2.040 OTU 1 seq prokMSA_id:040639 AF371560 clone p-2399-55G5 2.30.4.1.2.041 OTU 1 seq prokMSA_id:058011 AB094165 clone:C-86 2.30.4.1.2.043 OTU 6 seqs prokMSA_id:030895 AB050852 GA36 prokMSA_id:058010 AB094166 clone:C-21 prokMSA_id:069825 AF357568 mpn-isolate group 20 prokMSA_id:018687 AF371542 clone p-2000-s959-5 prokMSA_id:061056 AF530339 clone cadhufec17c09sav prokMSA_id:043588 AJ408993 clone HuCB12 2.30.4.1.2.046 OTU 2 seqs prokMSA_id:051976 AF376400 ckncm167-F3M.2D1 prokMSA_id:042130 AF376452 ckncm219-F4M.2A11 2.30.4.1.2.047 OTU 1 seq prokMSA_id:042647 AJ408147 equine intestinal sp. ML01 clone ML01 2.30.4.1.2.048 OTU 1 seq prokMSA_id:047813 AJ408140 equine intestinal sp. DW15 clone DW15 2.30.4.1.2.049 OTU 1 seq prokMSA_id:048088 AF371553 clone p-3663-18B3 2.30.4.1.2.050 OTU 1 seq prokMSA_id:069560 AF538858 Lachnospiraceae oral clone P4PC_43 P3 2.30.4.1.2.051 OTU 1 seq prokMSA_id:049915 AJ408159 equine intestinal sp. ML13 clone ML13 2.30.4.1.2.053 OTU 4 seqs prokMSA_id:052617 AJ408073 equine intestinal sp. CW03 clone CW03 prokMSA_id:037099 AJ408198 equine intestinal sp. MW11 clone MW11 prokMSA_id:036592 AJ408250 equine intestinal sp. PW04 clone PW04 prokMSA_id:050428 AJ408265 equine intestinal sp. PW19 clone PW19 2.30.4.1.2.054 OTU 1 seq prokMSA_id:050625 AJ408238 equine intestinal sp. PL31 clone PL31 2.30.4.1.2.055 OTU 1 seq prokMSA_id:050752 AJ408113 equine intestinal sp. DL26 clone DL26 2.30.4.1.2.056 OTU 1 seq prokMSA_id:051634 AF371546 clone p-2746-24E5 2.30.4.1.2.057 OTU 1 seq prokMSA_id:052043 AB034114 rumen 3C28d-5 2.30.4.1.2.058 OTU 1 seq prokMSA_id:052106 AF287775 Firmicutes sp. oral clone CH017 2.30.4.1.2.062 OTU 1 seq prokMSA_id:052624 AF371549 clone p-2595-9F5 2.30.4.1.2.065 OTU 1 seq prokMSA_id:054116 AF371552 clone p-2432-55G5 2.30.4.1.2.066 OTU 1 seq prokMSA_id:013988 X71860 cellulosolvens ATCC 43171 . 2.30.4.1.2.067 OTU 1 seq prokMSA_id:013991 AF153854 clone adhufec30.25. 2.30.4.1.2.068 OTU 1 seq prokMSA_id:013992 AF153853 clone adhufec35.25. 2.30.4.1.2.069 OTU 2 seqs prokMSA_id:013996 X94964 Ruminococcus sp. str. Bie 41. prokMSA_id:013995 X94965 Ruminococcus schinkii str. B DSM 10518 . 2.30.4.1.2.070 OTU 1 seq prokMSA_id:013997 X95624 Ruminococcus hydrogenotrophicus str. S5a33 DSM 10507 . 2.30.4.1.2.071 OTU 2 seqs prokMSA_id:089709 AB113696 clone:OAB9 prokMSA_id:013998 AF001692 clone RC25. 2.30.4.1.2.072 OTU 1 seq prokMSA_id:013999 AF001718 clone RC34. 2.30.4.1.2.073 OTU 3 seqs prokMSA_id:014007 L76595 Ruminococcus productus ATCC 27340 . prokMSA_id:014000 X94966 Ruminococcus productus ATCC 27340 . prokMSA_id:014001 Y10584 Clostridium sp. str. formate. 2.30.4.1.2.074 OTU 1 seq prokMSA_id:069958 AJ408971 clone HuCA19 2.30.4.1.2.075 OTU 1 seq prokMSA_id:070067 AF371550 clone p-31-a5 2.30.4.1.2.077 OTU 23 seqs prokMSA_id:058008 AB094168 clone:C-65 prokMSA_id:055797 AB094173 clone:C-76 prokMSA_id:058000 AB094178 clone:C-24 prokMSA_id:072691 AB095023 clone:C-29 prokMSA_id:071830 AF052417 A20 complete prokMSA_id:040035 AF132243 adhufec171 prokMSA_id:070796 AF253346 human infant P36G prokMSA_id:071824 AF253375 human infant L127dB prokMSA_id:077514 AF349429 A9 prokMSA_id:035844 AF357566 mpn-isolate group 18 prokMSA_id:068845 AF371540 clone p-2502-18B5 prokMSA_id:052321 AF371541 clone p-2482-18B5 prokMSA_id:070159 AF481816 clone P36B prokMSA_id:040308 AJ408958 clone HuCA2 prokMSA_id:033906 AJ408977 clone HuCA26 prokMSA_id:081272 AY169419 Ruminococcus obeum clone 1-33 prokMSA_id:081152 AY169424 Ruminococcus obeum clone 1-56 prokMSA_id:090996 AY338306 clone BREC_96 prokMSA_id:091641 AY338334 clone BREC_22 prokMSA_id:093077 AY343131 clone REC1M_17 prokMSA_id:092977 AY343132 clone REC1M_89 prokMSA_id:092854 AY343133 clone REC1M_43 prokMSA_id:092261 AY343225 clone REC6M_68 2.30.4.1.2.078 OTU 1 seq prokMSA_id:071965 AF371545 clone p-2624-9F5 2.30.4.1.2.079 OTU 1 seq prokMSA_id:072420 AF132274 adhufec52 2.30.4.1.2.080 OTU 1 seq prokMSA_id:073902 AF376145 ckncm241-c5d5 2.30.4.1.2.081 OTU 1 seq prokMSA_id:077322 AF349424 A39 2.30.4.1.2.082 OTU 1 seq prokMSA_id:077371 AF349421 A29 2.30.4.1.2.083 OTU 1 seq prokMSA_id:077466 AF349420 A22 2.30.4.1.2.084 OTU 1 seq prokMSA_id:077537 AF349417 A17 2.30.4.1.2.085 OTU 1 seq prokMSA_id:077785 AB088972 clone:Rs-H32 2.30.4.1.2.086 OTU 1 seq prokMSA_id:081963 AY080980 Ruminococcus sp. clone ckl19 2.30.4.1.2.087 OTU 1 seq prokMSA_id:090215 AY328364 inhufecA-27 2.30.4.1.2.088 OTU 1 seq prokMSA_id:090431 AJ311620 Clostridium hathewayi 2.30.4.1.2.089 OTU 6 seqs prokMSA_id:091235 AY338303 clone BREC_67 prokMSA_id:091194 AY338304 clone BREC_93 prokMSA_id:091048 AY338319 clone BREC_13 prokMSA_id:091616 AY338320 clone BREC_71 prokMSA_id:091200 AY338321 clone BREC_60 prokMSA_id:091534 AY338322 clone BREC_73 2.30.4.1.2.090 OTU 1 seq prokMSA_id:095910 AY239444 clone rc3-5 complete 2.30.4.1.2.091 OTU 1 seq prokMSA_id:095973 AY388436 clone Adhuleft28 2.30.4.1.2.999 poor quality 92 seqs prokMSA_id:062197 AB064749 firmicute clone:NO19 prokMSA_id:062196 AB064750 Ruminococcus sp. clone:NS2E3 prokMSA_id:062195 AB064751 Ruminococcus sp. clone:NO2-22 prokMSA_id:062194 AB064752 Ruminococcus sp. clone:NO54 prokMSA_id:062193 AB064753 Ruminococcus sp. clone:NB2F4 prokMSA_id:056583 AB064754 Ruminococcus sp. clone:N044 prokMSA_id:062191 AB064755 Ruminococcus sp. clone:NO3 prokMSA_id:056570 AB064756 Ruminococcus sp. clone:NO32 prokMSA_id:062192 AB064757 Ruminococcus sp. clone:NO57 prokMSA_id:062190 AB064758 Ruminococcus sp. clone:NB2A2 prokMSA_id:062189 AB064759 Ruminococcus sp. clone:NS2A4 prokMSA_id:062188 AB064760 Ruminococcus sp. clone:NB2E8 prokMSA_id:062187 AB064761 Ruminococcus sp. clone:NB2B8 prokMSA_id:062186 AB064762 Ruminococcus sp. clone:NO85 prokMSA_id:062185 AB064763 Ruminococcus sp. clone:NO67 prokMSA_id:062184 AB064764 Ruminococcus sp. clone:NB4E10 prokMSA_id:062183 AB064765 Ruminococcus sp. clone:NB4C1 prokMSA_id:062182 AB064766 Ruminococcus sp. clone:NS4F4 prokMSA_id:056065 AB064767 Ruminococcus sp. clone:NO2-38 prokMSA_id:062181 AB064768 Ruminococcus sp. clone:NO2-60 prokMSA_id:056591 AB064778 firmicute clone:NB4F10 prokMSA_id:062078 AB064893 Ruminococcus sp. CS1 prokMSA_id:062076 AB064894 Ruminococcus sp. CO34 prokMSA_id:062079 AB064895 Ruminococcus sp. CO7 prokMSA_id:062075 AB064896 Ruminococcus sp. CO12 prokMSA_id:062073 AB064897 Ruminococcus sp. CO22 prokMSA_id:062074 AB064898 Ruminococcus sp. CO1 prokMSA_id:056656 AB064899 Ruminococcus sp. CB3 prokMSA_id:062072 AB064900 Ruminococcus sp. CO27 prokMSA_id:062067 AB064901 Ruminococcus sp. CB10 prokMSA_id:062070 AB064902 Ruminococcus sp. CS6 prokMSA_id:065299 AB075627 chicken cecal clone:2D12 prokMSA_id:065296 AB075632 chicken cecal clone:2C7 prokMSA_id:065293 AB075635 chicken cecal clone:1E8 prokMSA_id:072800 AB075654 chicken cecal clone:1C11 prokMSA_id:058717 AB080864 human intestinal clone:JW1E5 prokMSA_id:058715 AB080867 human intestinal clone:JW1A6 prokMSA_id:055653 AB080868 human intestinal clone:JW1H7 prokMSA_id:058714 AB080869 human intestinal clone:JW1B11 prokMSA_id:058713 AB080870 human intestinal clone:JW2E8 prokMSA_id:087239 AB099746 clone: OLDB-C11 prokMSA_id:094854 AB120800 Gram-positive clone:MC41C05 prokMSA_id:021070 AF052413 A12 prokMSA_id:043855 AF052415 A14 prokMSA_id:013994 AF052422 clone A57. prokMSA_id:019373 AF211215 rumen 125cARRO prokMSA_id:070702 AF253344 human infant P36H prokMSA_id:074041 AF253374 human infant L127dA prokMSA_id:028998 AF261786 swine feces F12 prokMSA_id:035750 AF295108 marine anaerobic 90d11 prokMSA_id:042656 AF295110 marine anaerobic 90dCB10 prokMSA_id:068117 AF365619 clone BT60MF7BF10 prokMSA_id:043761 AF376146 ckncm242-m5d2 prokMSA_id:070068 AF376239 ckncm006-DC14 prokMSA_id:038431 AF376240 ckncm007-DS13 prokMSA_id:042346 AF376251 ckncm018-DS14 prokMSA_id:038553 AF376263 ckncm030-C3.15 prokMSA_id:074210 AF376276 ckncm043-F3M.2 prokMSA_id:072356 AF376278 ckncm045-B3sc.14 prokMSA_id:072671 AF376280 ckncm047-C1.10 prokMSA_id:027109 AF376281 ckncm048-F4M.13 prokMSA_id:071093 AF376296 ckncm063-F1M.13 prokMSA_id:023548 AF376390 ckncm157-F3M.1A10 prokMSA_id:021000 AF376403 ckncm170-F3M.1E10 prokMSA_id:050838 AF445201 Swine fecal FPC70 prokMSA_id:067661 AF485400 clone G13 prokMSA_id:062640 AF515496 clone 21B4 prokMSA_id:062636 AF515497 clone 24B14 prokMSA_id:061078 AF530312 clone cadhufec098h7 prokMSA_id:061034 AF530364 clone cadhufec102c10 prokMSA_id:021149 AJ270483 Butyrate-producing T2-132 prokMSA_id:026127 AY006502 rumen prokMSA_id:016623 AY006737 rumen prokMSA_id:023158 AY006835 rumen prokMSA_id:028199 AY038526 firmicute clone CD4B11 prokMSA_id:088606 AY311651 clone YRCC21 prokMSA_id:090495 AY311695 clone YRCD34 prokMSA_id:088118 AY311757 clone YRCE60 prokMSA_id:088362 AY311770 clone YRCF11 prokMSA_id:092961 AY343250 clone DONOR_81 prokMSA_id:096759 AY388405 clone Adhuright18 prokMSA_id:095244 AY388413 clone Adhuright46 prokMSA_id:097466 AY388427 clone Adhuleft04 prokMSA_id:014005 D14144 Ruminococcus productus ATCC 27340 . prokMSA_id:014003 D14155 Ruminococcus hansenii ATCC 27752 . prokMSA_id:013987 L34613 cellulosolvens ATCC 43171 . prokMSA_id:014006 M59090 Clostridium coccoides ATCC 29236 . prokMSA_id:014002 M59114 Ruminococcus hansenii ATCC 27752 . prokMSA_id:026595 U45699 activated sludge CL02 prokMSA_id:013990 U58237 Ruminococcus obeum. prokMSA_id:040860 U81747 clone vadinHB11 prokMSA_id:014004 X85333 str. 8. 2.30.4.1.3 EUB.SABURREUM_SUBGROUP 30 seqs 2.30.4.1.3.002 OTU 1 seq prokMSA_id:021881 AF371573 clone p-1616-c5 2.30.4.1.3.003 OTU 2 seqs prokMSA_id:022599 AF385557 sp. oral clone BR088 prokMSA_id:071649 AF385562 sp. oral clone BS091 2.30.4.1.3.006 OTU 1 seq prokMSA_id:068894 AJ408045 equine intestinal sp. CL10 clone CL10 2.30.4.1.3.007 OTU 1 seq prokMSA_id:029564 AF132264 adhufec363 2.30.4.1.3.008 OTU 1 seq prokMSA_id:071165 AF385567 sp. oral clone BU061 2.30.4.1.3.009 OTU 1 seq prokMSA_id:045298 AJ408164 equine intestinal sp. ML18 clone ML18 2.30.4.1.3.010 OTU 1 seq prokMSA_id:069672 AF481220 Lachnospiraceae oral clone MCE9_31 E3 2.30.4.1.3.011 OTU 1 seq prokMSA_id:014010 X87152 Johnsonella ignava ATCC 51276 . 2.30.4.1.3.013 OTU 10 seqs prokMSA_id:026238 AF201979 Human oral AC32 prokMSA_id:018045 AF201980 human oral A33 prokMSA_id:073044 AF201981 Human oral C73 prokMSA_id:044401 AF201982 human oral A72 prokMSA_id:072977 AF287777 cf. saburreum oral strain C27KA prokMSA_id:071550 AF385552 sp. oral clone BE088 prokMSA_id:086302 AY230771 sp. 'Smarlab BioMol-2301231' prokMSA_id:084694 AY230774 sp. 'Smarlab BioMol-2301166' prokMSA_id:092684 AY349376 sp. oral clone IR009 prokMSA_id:014009 NONE saburreum DSM 3986 . 2.30.4.1.3.014 OTU 1 seq prokMSA_id:077653 AB088990 clone:Rs-F27 2.30.4.1.3.015 OTU 1 seq prokMSA_id:092144 AY349379 sp. oral clone JI012 2.30.4.1.3.016 OTU 2 seqs prokMSA_id:093091 AY343187 clone REC6M_84 prokMSA_id:092625 AY343216 clone REC6M_80 2.30.4.1.3.999 poor quality 7 seqs prokMSA_id:049801 AB028403 oral AP60-50 prokMSA_id:086843 AB099793 clone: OLDA-D12 prokMSA_id:071868 AF376279 ckncm046-F1M.17 prokMSA_id:022437 AJ241744 microorganism clone Col68 prokMSA_id:090571 AY307990 clone UB033 prokMSA_id:090081 AY311713 clone YRCD58 prokMSA_id:014008 X89981 Butyrivibrio crossotus str. Bu 46 NCDO 2416 . 2.30.4.1.4 RUC.GNAVUS_SUBGROUP 428 seqs 2.30.4.1.4.002 OTU 1 seq prokMSA_id:016575 AJ408093 equine intestinal sp. DL05 clone DL05 2.30.4.1.4.003 OTU 3 seqs prokMSA_id:014035 AF157053 Clostridium ASF502 str. ASF 502. prokMSA_id:018180 AJ308396 C13-5 prokMSA_id:016757 AJ400255 clone L10-3 2.30.4.1.4.004 OTU 18 seqs prokMSA_id:016934 AF371596 clone p-2431-55G5 prokMSA_id:027488 AF371597 clone p-1561-b5 prokMSA_id:033011 AF446128 Clostridiaceae str. LEMV63 prokMSA_id:091608 AY338288 clone BREC_3 prokMSA_id:091176 AY338289 clone BREC_86 prokMSA_id:091276 AY338290 clone BREC_95 prokMSA_id:091702 AY338291 clone BREC_62 prokMSA_id:091624 AY338293 clone BREC_49 prokMSA_id:091068 AY338294 clone BREC_83 prokMSA_id:091743 AY338314 clone BREC_12 prokMSA_id:091995 AY338315 clone BREC_20 prokMSA_id:091098 AY338316 clone BREC_69 prokMSA_id:091051 AY338317 clone BREC_85 prokMSA_id:091783 AY338318 clone BREC_61 prokMSA_id:091380 AY338333 clone BREC_15 prokMSA_id:091681 AY338342 clone BREC_47 prokMSA_id:092201 AY343311 clone DONOR_18 prokMSA_id:092040 AY343313 clone DONOR_98 2.30.4.1.4.005 OTU 1 seq prokMSA_id:017263 AJ408125 equine intestinal sp. DL38 clone DL38 2.30.4.1.4.006 OTU 1 seq prokMSA_id:017494 AF126687 Clostridium fimetarium 2.30.4.1.4.007 OTU 1 seq prokMSA_id:018550 AB056647 fiber-attaching rumen clone:SY6 2.30.4.1.4.010 OTU 1 seq prokMSA_id:019275 AF280825 tbr1-10 2.30.4.1.4.011 OTU 2 seqs prokMSA_id:071397 AF287771 Firmicutes sp. oral clone AO068 prokMSA_id:059532 AF538857 Lachnospiraceae oral clone P4PC_12 P1 2.30.4.1.4.012 OTU 1 seq prokMSA_id:019426 AJ408182 equine intestinal sp. ML36 clone ML36 2.30.4.1.4.013 OTU 4 seqs prokMSA_id:048553 AB020728 Clostridium scindens strain:JCM 10419 Y-1113 prokMSA_id:039133 AB020729 Clostridium scindens strain:JCM 10420 M-18 prokMSA_id:019457 AB020806 Clostridium scindens strain:JCM 10423 36S prokMSA_id:054563 AF262236 sp. VPI 12708 2.30.4.1.4.014 OTU 1 seq prokMSA_id:019873 AF371570 clone p-416-o3 2.30.4.1.4.015 OTU 1 seq prokMSA_id:019932 AF429375 CCAJG116 2.30.4.1.4.016 OTU 7 seqs prokMSA_id:033482 AB020727 Clostridium scindens strain:JCM 10418 prokMSA_id:037201 AB020730 Clostridium scindens strain:JCM 10421 I-10 prokMSA_id:023008 AB020731 Clostridium scindens strain:JCM 10422 TH-82 prokMSA_id:045711 AB020883 Clostridium scindens strain:JCM 6567 prokMSA_id:050457 AF262238 Clostridium scindens prokMSA_id:086360 AY244789 Clostridium scindens prokMSA_id:020145 Y18186 Clostridium scindens strain DSM 5676 2.30.4.1.4.017 OTU 3 seqs prokMSA_id:021408 AB034123 rumen 4C28d-8 prokMSA_id:029758 AJ408967 clone HuCA13 prokMSA_id:031554 AJ408979 clone HuCA28 2.30.4.1.4.018 OTU 1 seq prokMSA_id:021596 AF376438 ckncm205-F4M.1D4 2.30.4.1.4.019 OTU 2 seqs prokMSA_id:040649 AF371631 clone p-2151-s959-3 prokMSA_id:022158 AF371632 clone p-1608-c5 2.30.4.1.4.020 OTU 1 seq prokMSA_id:022371 AF371633 clone p-2186-s959-3 2.30.4.1.4.021 OTU 2 seqs prokMSA_id:022721 AF371580 clone p-265-o5 prokMSA_id:047477 AF371581 clone p-217-o5 2.30.4.1.4.022 OTU 6 seqs prokMSA_id:035683 AF298662 Lachnobacterium bovis strain LRC 5357 prokMSA_id:037865 AF298663 Lachnobacterium bovis strain LRC 5382 prokMSA_id:052262 AF298664 Lachnobacterium bovis strain LRC 5405 prokMSA_id:036354 AF298665 Lachnobacterium bovis strain LRC 5436 prokMSA_id:024050 AF396923 sp. C12b prokMSA_id:023277 AF396924 sp. C124b 2.30.4.1.4.023 OTU 2 seqs prokMSA_id:025749 AF371606 clone p-2575-9F5 prokMSA_id:023714 AF371607 clone p-2580-9F5 2.30.4.1.4.024 OTU 1 seq prokMSA_id:024304 AF371563 clone p-4529-4Wb3 2.30.4.1.4.025 OTU 1 seq prokMSA_id:024522 AF371668 clone p-3487-9F3 2.30.4.1.4.026 OTU 3 seqs prokMSA_id:035150 AB023972 Clostridium hylemonae strain:TN-271 prokMSA_id:074779 AB023973 Clostridium hylemonae strain:TN-272 prokMSA_id:024546 AF262239 Clostridium leptum 2.30.4.1.4.027 OTU 2 seqs prokMSA_id:028819 AJ408063 equine intestinal sp. CL29 clone CL29 prokMSA_id:025277 AJ408184 equine intestinal sp. ML38 clone ML38 2.30.4.1.4.028 OTU 1 seq prokMSA_id:025534 AF371626 clone p-2035-s959-5 2.30.4.1.4.029 OTU 1 seq prokMSA_id:025842 AF371666 clone p-204-o5 2.30.4.1.4.030 OTU 1 seq prokMSA_id:025934 AF132278 adhufec68 2.30.4.1.4.032 OTU 1 seq prokMSA_id:027071 AF371598 clone p-3568-9F3 2.30.4.1.4.033 OTU 1 seq prokMSA_id:027190 AF461498 clone CIAJG45 2.30.4.1.4.034 OTU 1 seq prokMSA_id:027193 AF376386 ckncm153-F1M.2G8 2.30.4.1.4.035 OTU 1 seq prokMSA_id:029205 AF371582 clone p-57-a5 2.30.4.1.4.036 OTU 1 seq prokMSA_id:030334 AJ272036 Parasporobacterium paucivorans strain SYR1 2.30.4.1.4.038 OTU 1 seq prokMSA_id:030622 AF371634 clone p-1817-c3 2.30.4.1.4.039 OTU 1 seq prokMSA_id:032727 AF371667 clone p-1612-c5 2.30.4.1.4.040 OTU 1 seq prokMSA_id:033245 AF148533 TMB39 2.30.4.1.4.041 OTU 11 seqs prokMSA_id:070405 AF357564 mpn-isolate group 16 prokMSA_id:033341 AF371595 clone p-596-a5 prokMSA_id:038044 AJ408996 clone HuCB21 prokMSA_id:091953 AY338302 clone BREC_81 prokMSA_id:092969 AY343124 clone REC1M_83 prokMSA_id:092447 AY343125 clone REC1M_84 prokMSA_id:092315 AY343126 clone REC1M_49 prokMSA_id:093036 AY343226 clone REC6M_82 prokMSA_id:092207 AY343255 clone DONOR_65 prokMSA_id:092135 AY343256 clone DONOR_99 prokMSA_id:092208 AY343257 clone DONOR_21 2.30.4.1.4.042 OTU 1 seq prokMSA_id:033681 AF371604 clone p-2581-9F5 2.30.4.1.4.043 OTU 1 seq prokMSA_id:034020 AF371574 clone p-2044-s959-5 2.30.4.1.4.044 OTU 1 seq prokMSA_id:034116 AJ408211 equine intestinal sp. PL03 clone PL03 2.30.4.1.4.045 OTU 1 seq prokMSA_id:034413 AF371635 clone p-2182-959-3 2.30.4.1.4.046 OTU 1 seq prokMSA_id:034466 AF287774 Firmicutes sp. oral clone CK051 2.30.4.1.4.047 OTU 1 seq prokMSA_id:034649 AF371559 clone p-3075-SwA5 2.30.4.1.4.048 OTU 1 seq prokMSA_id:069696 AB094155 clone:C-55 2.30.4.1.4.049 OTU 1 seq prokMSA_id:034847 AF371585 clone p-242-o5 2.30.4.1.4.050 OTU 1 seq prokMSA_id:035682 AF429358 CCAJG140 2.30.4.1.4.051 OTU 1 seq prokMSA_id:036611 AF371558 clone p-3022-SwA5 2.30.4.1.4.052 OTU 1 seq prokMSA_id:037025 AF461499 clone CIAJG49 2.30.4.1.4.053 OTU 1 seq prokMSA_id:037325 AJ408124 equine intestinal sp. DL37 clone DL37 2.30.4.1.4.054 OTU 2 seqs prokMSA_id:038313 AJ408992 clone HuCB10 prokMSA_id:014012 L76604 Ruminococcus torques ATCC 27756 . 2.30.4.1.4.055 OTU 1 seq prokMSA_id:038374 AF132267 adhufec382 2.30.4.1.4.056 OTU 1 seq prokMSA_id:038415 AJ400271 clone L10-9 2.30.4.1.4.057 OTU 1 seq prokMSA_id:038625 AJ408178 equine intestinal sp. ML32 clone ML32 2.30.4.1.4.058 OTU 1 seq prokMSA_id:038812 AJ400260 clone L10-8 2.30.4.1.4.059 OTU 2 seqs prokMSA_id:070219 AJ270474 Butyrate-producing L1-83 prokMSA_id:039012 AJ409004 clone HuCB37 2.30.4.1.4.060 OTU 1 seq prokMSA_id:039350 AF371571 clone p-2168-959-3 2.30.4.1.4.061 OTU 1 seq prokMSA_id:040482 AF446130 Clostridiaceae str. LEMV78 2.30.4.1.4.062 OTU 1 seq prokMSA_id:058018 AB094153 clone:C-22 2.30.4.1.4.063 OTU 1 seq prokMSA_id:041448 AJ408130 equine intestinal sp. DW05 clone DW05 2.30.4.1.4.064 OTU 1 seq prokMSA_id:058015 AB094157 clone:C-17 2.30.4.1.4.065 OTU 1 seq prokMSA_id:058009 AB094167 clone:C-63 2.30.4.1.4.066 OTU 1 seq prokMSA_id:041575 AF429357 CCAJG155 2.30.4.1.4.067 OTU 1 seq prokMSA_id:041672 AF376421 ckncm188-F3M.1H3 2.30.4.1.4.069 OTU 1 seq prokMSA_id:042900 AJ408068 equine intestinal sp. CL34 clone CL34 2.30.4.1.4.070 OTU 1 seq prokMSA_id:042920 AJ408188 equine intestinal sp. MW01 clone MW01 2.30.4.1.4.071 OTU 1 seq prokMSA_id:043159 AF371599 clone p-1512-b5 2.30.4.1.4.072 OTU 2 seqs prokMSA_id:051916 AB034115 rumen 4C28d-17 prokMSA_id:043305 AB034116 rumen 4C28d-13 2.30.4.1.4.074 OTU 19 seqs prokMSA_id:029024 AB050853 GA21 prokMSA_id:058014 AB094160 clone:C-37 prokMSA_id:058013 AB094162 clone:C-38 prokMSA_id:014025 AF052421 clone A54. prokMSA_id:026562 AF132245 adhufec217 prokMSA_id:048755 AF371564 clone p-2823-6C5 prokMSA_id:061045 AF530353 clone cadhufec18d04sav prokMSA_id:043617 AJ408969 clone HuCA17 prokMSA_id:081160 AY169422 Clostridium clostridioforme prokMSA_id:091015 AY338348 clone BREC_10 prokMSA_id:091293 AY338349 clone BREC_18 prokMSA_id:091894 AY338351 clone BREC_30 prokMSA_id:091148 AY338352 clone BREC_51 prokMSA_id:093144 AY343185 clone REC6M_77 prokMSA_id:092441 AY343210 clone REC6M_11 prokMSA_id:092132 AY343211 clone REC6M_42 prokMSA_id:092522 AY343212 clone REC6M_37 prokMSA_id:092421 AY343249 clone DONOR_51 prokMSA_id:097773 AY388448 clone Adhuleft69 2.30.4.1.4.075 OTU 1 seq prokMSA_id:044311 AB034054 rumen 3C3d-15 2.30.4.1.4.076 OTU 1 seq prokMSA_id:044560 AF371618 clone p-196-o5 2.30.4.1.4.078 OTU 8 seqs prokMSA_id:058016 AB094156 clone:C-52 prokMSA_id:030495 AF132271 adhufec420 prokMSA_id:044883 AF371594 clone p-2486-18B5 prokMSA_id:038717 AF446129 Clostridiaceae str. LEMV61 prokMSA_id:061097 AF530297 clone cadhufec010h7 prokMSA_id:039079 AJ132842 sp. III-35 prokMSA_id:089849 AY328371 inhufecB-27 prokMSA_id:092241 AY343310 clone DONOR_41 2.30.4.1.4.079 OTU 1 seq prokMSA_id:045306 AJ400261 clone L11-5 2.30.4.1.4.080 OTU 1 seq prokMSA_id:045581 AF371589 clone p-3-a5 2.30.4.1.4.081 OTU 1 seq prokMSA_id:046103 AJ408975 clone HuCA23 2.30.4.1.4.082 OTU 1 seq prokMSA_id:046733 AJ408128 equine intestinal sp. DW03 clone DW03 2.30.4.1.4.084 OTU 12 seqs prokMSA_id:049841 AF153859 adhufec03.25 prokMSA_id:016544 AF371591 clone p-44-a5 prokMSA_id:046947 AF371592 clone p-2561-9F5 prokMSA_id:061037 AF530361 clone cadhufec18g03sav prokMSA_id:018972 AJ270484 Butyrate-producing A2-231 prokMSA_id:081063 AY169415 Clostridium nexile prokMSA_id:092309 AY343127 clone REC1M_1 prokMSA_id:092922 AY343258 clone DONOR_25 prokMSA_id:092673 AY343259 clone DONOR_69 prokMSA_id:092627 AY343296 clone DONOR_26 prokMSA_id:093030 AY343297 clone DONOR_43 prokMSA_id:092529 AY343298 clone DONOR_22 2.30.4.1.4.085 OTU 1 seq prokMSA_id:048120 AF371614 clone p-2184-s959-3 2.30.4.1.4.086 OTU 1 seq prokMSA_id:049764 AF376416 ckncm183-F3M.2G2 2.30.4.1.4.087 OTU 1 seq prokMSA_id:050105 AF371616 clone p-2195-s959-3 2.30.4.1.4.088 OTU 1 seq prokMSA_id:050579 AB056711 equine intestinal clone:YT29 2.30.4.1.4.089 OTU 1 seq prokMSA_id:051677 AJ308386 clone L10-21 2.30.4.1.4.090 OTU 1 seq prokMSA_id:052780 AJ408126 equine intestinal sp. DW01 clone DW01 2.30.4.1.4.092 OTU 9 seqs prokMSA_id:057998 AB094182 clone:G-90 prokMSA_id:061062 AF530334 clone cadhufec20c08yvb prokMSA_id:061028 AF530375 clone cadhufec46c10 prokMSA_id:088198 AY328362 inhufecA-23 prokMSA_id:088532 AY328372 inhufecB-28 prokMSA_id:091790 AY338301 clone BREC_66 prokMSA_id:091698 AY338313 clone BREC_55 prokMSA_id:014032 L76597 Ruminococcus gnavus ATCC 29149 . prokMSA_id:014034 X94967 Ruminococcus gnavus ATCC 29149 . 2.30.4.1.4.093 OTU 1 seq prokMSA_id:061064 AF530331 clone cadhufec20a04yvb 2.30.4.1.4.094 OTU 1 seq prokMSA_id:068343 AF481221 Lachnospiraceae oral clone MCE9_173 E4 2.30.4.1.4.095 OTU 1 seq prokMSA_id:068346 AF481218 Lachnospiraceae oral clone MCE7_60 E1 2.30.4.1.4.096 OTU 1 seq prokMSA_id:068842 AF371593 clone p-4575-4Wb3 2.30.4.1.4.097 OTU 1 seq prokMSA_id:068843 AF371587 clone p-393-o3 2.30.4.1.4.098 OTU 1 seq prokMSA_id:014013 AB009173 clone RFN14. 2.30.4.1.4.099 OTU 1 seq prokMSA_id:014015 AF153858 clone adhufec80.25. 2.30.4.1.4.100 OTU 1 seq prokMSA_id:014016 M59109 Clostridium oroticum ATCC 13619 . 2.30.4.1.4.101 OTU 2 seqs prokMSA_id:091593 AY338343 clone BREC_39 prokMSA_id:014017 NONE fissicatena DSM 3598 . 2.30.4.1.4.102 OTU 1 seq prokMSA_id:014018 AF125207 clone X112. 2.30.4.1.4.103 OTU 2 seqs prokMSA_id:014019 AF001715 clone RC26. prokMSA_id:014020 AF001721 clone RC35. 2.30.4.1.4.104 OTU 1 seq prokMSA_id:014021 AF116854 Sporobacterium olearius str. SR1 DSM 12504. 2.30.4.1.4.105 OTU 1 seq prokMSA_id:014022 AF018557 clone JW29. 2.30.4.1.4.107 OTU 2 seqs prokMSA_id:014026 AB009204 clone RFN48. prokMSA_id:089882 AB113697 clone:OAB10 2.30.4.1.4.108 OTU 1 seq prokMSA_id:014027 AB009213 clone RFN66. 2.30.4.1.4.109 OTU 1 seq prokMSA_id:014033 AF028349 Clostridium fusiformis str. CM973. 2.30.4.1.4.110 OTU 1 seq prokMSA_id:014036 X73443 Clostridium nexile DSM 1787 . 2.30.4.1.4.111 OTU 1 seq prokMSA_id:070254 AF371639 clone p-50-a5 2.30.4.1.4.112 OTU 1 seq prokMSA_id:071387 AF385508 sp. oral clone DO008 2.30.4.1.4.113 OTU 1 seq prokMSA_id:071430 AJ315487 isolate HuCC43 2.30.4.1.4.114 OTU 1 seq prokMSA_id:071434 AF357572 mpn-isolate group 24 2.30.4.1.4.115 OTU 1 seq prokMSA_id:071692 AF357570 mpn-isolate group 22 2.30.4.1.4.116 OTU 1 seq prokMSA_id:077315 AF349423 A36 2.30.4.1.4.117 OTU 1 seq prokMSA_id:077728 AB089125 candidate division OP11 clone:Rs-J47 2.30.4.1.4.118 OTU 1 seq prokMSA_id:077853 AB088998 clone:Rs-G40 2.30.4.1.4.119 OTU 1 seq prokMSA_id:078204 AB088993 clone:Rs-D48 2.30.4.1.4.120 OTU 1 seq prokMSA_id:080819 AY193200 candidate division SR1 clone SRB30 2.30.4.1.4.121 OTU 1 seq prokMSA_id:081593 AY216444 clone KM01 2.30.4.1.4.122 OTU 1 seq prokMSA_id:083163 AY239558 clone CARB_ER1_21 2.30.4.1.4.123 OTU 1 seq prokMSA_id:083649 AY239559 clone CARB_ER_19 2.30.4.1.4.124 OTU 1 seq prokMSA_id:084731 AY226309 clone DBBB-71 2.30.4.1.4.125 OTU 1 seq prokMSA_id:088129 AY327235 clone ZB18 2.30.4.1.4.126 OTU 1 seq prokMSA_id:091017 AY338344 clone BREC_40 2.30.4.1.4.128 OTU 4 seqs prokMSA_id:014023 AF052412 clone A11. prokMSA_id:091401 AY338345 clone BREC_89 prokMSA_id:091715 AY338346 clone BREC_90 prokMSA_id:091754 AY338347 clone BREC_82 2.30.4.1.4.129 OTU 1 seq prokMSA_id:092513 AY343308 clone DONOR_66 2.30.4.1.4.130 OTU 1 seq prokMSA_id:094296 AB120808 Gram-positive clone:MC41C03 2.30.4.1.4.131 OTU 1 seq prokMSA_id:094442 AB120794 Gram-positive clone:MC41D02 2.30.4.1.4.132 OTU 1 seq prokMSA_id:094476 AB120790 Gram-positive clone:MC42G11 2.30.4.1.4.133 OTU 1 seq prokMSA_id:094623 AB120789 Gram-positive clone:MC41C01 2.30.4.1.4.134 OTU 1 seq prokMSA_id:094672 AB120791 Gram-positive clone:MC82F09 2.30.4.1.4.135 OTU 1 seq prokMSA_id:095974 AY160788 clone COB P1-17 2.30.4.1.4.136 OTU 1 seq prokMSA_id:096495 AY160787 clone COB P1-14 2.30.4.1.4.137 OTU 1 seq prokMSA_id:097027 AY160789 clone COB P1-21 2.30.4.1.4.138 OTU 1 seq prokMSA_id:097161 AY388447 clone Adhuleft66 2.30.4.1.4.139 OTU 1 seq prokMSA_id:097348 AY160786 clone COB P1-8 2.30.4.1.4.140 OTU 1 seq prokMSA_id:097591 AY160791 clone COB P1-29 2.30.4.1.4.141 OTU 1 seq prokMSA_id:097679 AY239462 Clostridium sp. cTPY-17 complete 2.30.4.1.4.142 OTU 1 seq prokMSA_id:098763 AY160790 clone COB P1-28 2.30.4.1.4.999 poor quality 193 seqs prokMSA_id:031534 AB034050 rumen 5C0d-23 prokMSA_id:062216 AB064722 firmicute clone:NO1F3 prokMSA_id:062217 AB064723 firmicute clone:NS1B8 prokMSA_id:062218 AB064724 firmicute clone:NO1F8 prokMSA_id:062214 AB064725 firmicute clone:NS2A6 prokMSA_id:056663 AB064726 Ruminococcus sp. clone:NO26 prokMSA_id:062215 AB064727 firmicute clone:NO2-24 prokMSA_id:062213 AB064728 firmicute clone:NS2A3 prokMSA_id:062212 AB064729 firmicute clone:NO7 prokMSA_id:062211 AB064730 firmicute clone:NB2A8 prokMSA_id:062210 AB064731 firmicute clone:NS2C10 prokMSA_id:062206 AB064735 firmicute clone:NO36 prokMSA_id:069503 AB064738 firmicute clone:NS2C12 prokMSA_id:071045 AB064739 firmicute clone:NB2F7 prokMSA_id:062205 AB064740 firmicute clone:NO62 prokMSA_id:069422 AB064741 firmicute clone:NB2A10 prokMSA_id:062204 AB064742 firmicute clone:NO81 prokMSA_id:062203 AB064743 firmicute clone:NO31 prokMSA_id:062202 AB064744 firmicute clone:NO2 prokMSA_id:062200 AB064745 Ruminococcus sp. clone:NO41 prokMSA_id:062201 AB064746 firmicute clone:NO2-48 prokMSA_id:062199 AB064747 firmicute clone:NB4C3 prokMSA_id:062198 AB064748 firmicute clone:NB5G12 prokMSA_id:062176 AB064773 firmicute clone:NS2F9 prokMSA_id:062175 AB064774 firmicute clone:NO1D2 prokMSA_id:062174 AB064775 firmicute clone:NB2D12 prokMSA_id:062084 AB064885 Human intestinal firmicute CO10 prokMSA_id:062086 AB064886 Human intestinal firmicute CS26 prokMSA_id:062081 AB064888 Human intestinal firmicute CO4 prokMSA_id:074328 AB064889 Human intestinal firmicute CO39 prokMSA_id:071942 AB064890 Human intestinal firmicute CB17 prokMSA_id:062080 AB064891 Ruminococcus sp. CO28 prokMSA_id:062077 AB064892 Ruminococcus sp. CO41 prokMSA_id:065301 AB075626 chicken cecal clone:2H11 prokMSA_id:065300 AB075629 chicken cecal clone:1D1 prokMSA_id:065298 AB075630 chicken cecal clone:1F11 prokMSA_id:065297 AB075631 chicken cecal clone:2F2 prokMSA_id:065294 AB075634 chicken cecal clone:2E10 prokMSA_id:065292 AB075636 chicken cecal clone:1A4 prokMSA_id:065288 AB075640 chicken cecal clone:1A12 prokMSA_id:065287 AB075642 chicken cecal clone:1E9 prokMSA_id:065286 AB075643 chicken cecal clone:1E7 prokMSA_id:065284 AB075644 chicken cecal clone:1C12 prokMSA_id:065283 AB075645 chicken cecal clone:1C9 prokMSA_id:065285 AB075646 chicken cecal clone:2E8 prokMSA_id:056285 AB075647 chicken cecal clone:1G9 prokMSA_id:065282 AB075648 chicken cecal clone:2B4 prokMSA_id:065281 AB075649 chicken cecal clone:1G11 prokMSA_id:055672 AB075650 chicken cecal clone:1A1 prokMSA_id:065280 AB075651 chicken cecal clone:2C1 prokMSA_id:069454 AB075655 chicken cecal clone:1D4 prokMSA_id:065260 AB075678 Firmicutes str. C38 prokMSA_id:065259 AB075679 Ruminococcus sp. C36 prokMSA_id:058718 AB080859 human intestinal clone:JW1D1 prokMSA_id:069331 AB080860 human intestinal clone:JW1A12 prokMSA_id:074178 AB080861 human intestinal clone:JW1B8 prokMSA_id:069189 AB080862 human intestinal clone:JW1H4 prokMSA_id:072818 AB080863 human intestinal clone:JW2G3 prokMSA_id:058716 AB080866 human intestinal clone:JW1A10 prokMSA_id:058694 AB080891 Ruminococcus sp. CJ60 prokMSA_id:070493 AB080892 Clostridium sp. CJ67 prokMSA_id:071845 AB080893 Clostridium sp. CJ23 prokMSA_id:058693 AB080894 Ruminococcus sp. CJ63 prokMSA_id:087759 AB099735 clone: OLDB-F3 prokMSA_id:086756 AB099738 clone: OLDA-A12 prokMSA_id:086862 AB099739 clone: OLDA-F10 prokMSA_id:086726 AB099742 clone: OLDA-G10 prokMSA_id:094930 AB120783 Gram-positive clone:MC42D09 prokMSA_id:095137 AB120788 Gram-positive clone:MC42G08 prokMSA_id:094780 AB120792 Gram-positive clone:MC41F06 prokMSA_id:014024 AF052418 clone A21. prokMSA_id:014030 AF052423 clone A71. prokMSA_id:027069 AF070464 Mixed culture ruminal PAD156 prokMSA_id:025500 AF132253 adhufec250 prokMSA_id:073263 AF253333 human infant D8F prokMSA_id:071685 AF253389 human infant L37A prokMSA_id:016932 AF261783 swine feces F9 prokMSA_id:049209 AF261789 swine feces F18 prokMSA_id:042327 AF261790 swine feces F19 prokMSA_id:043245 AF261802 manure pit P314 prokMSA_id:030039 AF293929 rumen clone 27 prokMSA_id:077548 AF349418 A2 prokMSA_id:072840 AF357571 mpn-isolate group 23 prokMSA_id:021519 AF357575 mpn-isolate group 27 prokMSA_id:068079 AF365665 clone BM89DS6BbD8 prokMSA_id:041044 AF376138 ckncm234-c5b4 prokMSA_id:019670 AF376139 ckncm235-c5c9 prokMSA_id:016885 AF376141 ckncm237-2m5d10 prokMSA_id:019297 AF376142 ckncm238-m5e1 prokMSA_id:053413 AF376149 ckncm245-2c5e102 prokMSA_id:026632 AF376234 ckncm001-DS8 prokMSA_id:074500 AF376238 ckncm005-DS6 prokMSA_id:073401 AF376249 ckncm016-DS5 prokMSA_id:073655 AF376250 ckncm017-DC1 prokMSA_id:073675 AF376253 ckncm020-DC6 prokMSA_id:074167 AF376254 ckncm021-F4M.10 prokMSA_id:024981 AF376258 ckncm025-B2ds.5 prokMSA_id:070610 AF376260 ckncm027-F1M.6 prokMSA_id:074398 AF376261 ckncm028-F3M.7 prokMSA_id:069891 AF376262 ckncm029-F1M.1 prokMSA_id:034072 AF376266 ckncm033-C1.7 prokMSA_id:026977 AF376271 ckncm038-B1ds.1 prokMSA_id:074403 AF376274 ckncm041-A2.3 prokMSA_id:035672 AF376275 ckncm042-C1.5 prokMSA_id:021775 AF376277 ckncm044-B3sc.1 prokMSA_id:016398 AF376282 ckncm049-C2.8 prokMSA_id:034075 AF376285 ckncm052-C1.14 prokMSA_id:071874 AF376286 ckncm053-MC.M16 prokMSA_id:049612 AF376288 ckncm055-MC.C5 prokMSA_id:070409 AF376302 ckncm069-A1.6h8 prokMSA_id:020383 AF376326 ckncm093-B412.1A11 prokMSA_id:033756 AF376330 ckncm097-B412.1F5 prokMSA_id:048519 AF376359 ckncm126-C31.D8 prokMSA_id:041930 AF376371 ckncm138-F1M.2C8 prokMSA_id:029469 AF376377 ckncm144-F1M.2E3 prokMSA_id:044256 AF376379 ckncm146-F1M.1F10 prokMSA_id:032898 AF376391 ckncm158-F3M.1A3 prokMSA_id:021011 AF376423 ckncm190-F3M.2H8 prokMSA_id:033167 AF376425 ckncm192-F4M.1A12 prokMSA_id:032736 AF376447 ckncm214-F4M.1G5 prokMSA_id:029038 AF429365 CCAJG69 prokMSA_id:043900 AF429366 CCAJG94 prokMSA_id:075062 AF432759 clone N41.106PG prokMSA_id:029153 AF445197 Swine fecal FPC50 prokMSA_id:024581 AF445198 Swine fecal FPC47 prokMSA_id:022714 AF445199 Swine fecal FPC109 prokMSA_id:042496 AF445200 Swine fecal FPC73 prokMSA_id:035519 AF445237 Swine manure pit PPC91 prokMSA_id:020260 AF445238 Swine manure pit PPC82 prokMSA_id:028261 AF445239 Swine manure pit PPC80 prokMSA_id:050156 AF445254 Swine manure pit PPC92 prokMSA_id:045749 AF445255 Swine manure pit PPC43 prokMSA_id:032953 AF445256 Swine manure pit PPC42 prokMSA_id:030389 AF445257 Swine manure pit PPC95 prokMSA_id:020840 AF445258 Swine manure pit PPC108 prokMSA_id:052813 AF445259 Swine manure pit PPC90 prokMSA_id:039779 AF445263 Swine manure pit PPC17 prokMSA_id:044783 AF445264 Swine manure pit PPC18 prokMSA_id:048286 AF445285 Swine manure pit PPC31 prokMSA_id:050049 AF445286 Swine manure pit PPC93 prokMSA_id:030221 AF445287 Swine manure pit PPC39 prokMSA_id:020108 AF445288 Swine manure pit PPC37 prokMSA_id:016289 AF445289 Swine manure pit PPC88 prokMSA_id:043448 AF445290 Swine manure pit PPC89 prokMSA_id:082931 AF499838 clone LCLC23 prokMSA_id:085851 AF499839 clone LCLC63 prokMSA_id:082924 AF499840 clone LCLC1 prokMSA_id:084511 AF499847 clone LCLC8 prokMSA_id:085291 AF499853 clone LCRC42 prokMSA_id:083605 AF499854 clone LCRC36 prokMSA_id:085909 AF499855 clone LCRC24 prokMSA_id:084375 AF499860 clone LCRC3 prokMSA_id:085848 AF499871 clone LCTI66 prokMSA_id:083936 AF499872 clone LCTI34 prokMSA_id:083825 AF499873 clone LCTI6 prokMSA_id:083305 AF499880 clone ABLC30 prokMSA_id:085187 AF499881 clone ABLC1 prokMSA_id:083603 AF499904 clone ABLC75 prokMSA_id:085322 AF499909 clone ABLCf89 prokMSA_id:061085 AF530304 clone cadhufec064h7 prokMSA_id:061077 AF530314 clone cadhufec101h7 prokMSA_id:055624 AF530380 clone cadhufec69c10 prokMSA_id:019853 AJ241779 microorganism clone Cow38 prokMSA_id:045623 AJ400265 clone L10-2 prokMSA_id:049378 AJ418956 clone k019 prokMSA_id:029851 AJ419003 clone kl015 prokMSA_id:033803 AJ419026 clone kl069 prokMSA_id:041946 AY006495 rumen prokMSA_id:037953 AY038395 firmicute clone CD5E5 prokMSA_id:026006 AY038413 firmicute clone CD5C9 prokMSA_id:084171 AY092324 clone BM69 prokMSA_id:059309 AY122348 clone III-57 prokMSA_id:095460 AY160783 clone COB P1-2 prokMSA_id:098785 AY160784 clone COB P1-3 prokMSA_id:096498 AY160785 clone COB P1-4 prokMSA_id:097294 AY239460 Clostridium sp. cTPY-12 complete prokMSA_id:090058 AY311702 clone YRCD44 prokMSA_id:088650 AY315200 rumen clone JRCG06 prokMSA_id:089421 AY315294 rumen clone JRCI57 prokMSA_id:091746 AY338292 clone BREC_75re prokMSA_id:091823 AY338350 clone BREC_28 prokMSA_id:092218 AY341236 Ruminococcus gnavus clone B07 prokMSA_id:092125 AY341237 Ruminococcus gnavus clone B09 prokMSA_id:092035 AY343312 clone DONOR_58 prokMSA_id:096232 AY388402 clone Adhuright06 prokMSA_id:098618 AY388425 clone Adhuleft02 prokMSA_id:095225 AY388440 clone Adhuleft39 prokMSA_id:014031 D14136 Ruminococcus gnavus ATCC 29149 . prokMSA_id:014011 D14137 Ruminococcus torques ATCC 27756 . prokMSA_id:014028 L34615 contortum ATCC 25540 . prokMSA_id:014029 L34619 formicigenerans ATCC 27755 . prokMSA_id:014014 L76602 Ruminococcus lactaris ATCC 29176 . prokMSA_id:022912 U81758 clone vadinHB54 2.30.4.1.5 BTV.FIBRISOLVENS_SUBGROUP 234 seqs 2.30.4.1.5.001 OTU 1 seq prokMSA_id:016340 AF371601 clone p-43-a5 2.30.4.1.5.002 OTU 1 seq prokMSA_id:016353 AF371624 clone p-1925-962-3 2.30.4.1.5.003 OTU 2 seqs prokMSA_id:016628 AJ408119 equine intestinal sp. DL32 clone DL32 prokMSA_id:051234 AJ408196 equine intestinal sp. MW09 clone MW09 2.30.4.1.5.004 OTU 3 seqs prokMSA_id:027644 AJ408071 equine intestinal sp. CW01 clone CW01 prokMSA_id:017054 AJ408141 equine intestinal sp. DW16 clone DW16 prokMSA_id:032639 AJ408251 equine intestinal sp. PW05 clone PW05 2.30.4.1.5.005 OTU 2 seqs prokMSA_id:017208 AF132238 adhufec150 prokMSA_id:092487 AY343128 clone REC1M_10 2.30.4.1.5.006 OTU 3 seqs prokMSA_id:017906 AB034060 rumen 5C3d-5 prokMSA_id:023832 AB034061 rumen 5C3d-20 prokMSA_id:030898 AB034062 rumen 5C3d-16 2.30.4.1.5.008 OTU 1 seq prokMSA_id:018923 AJ408241 equine intestinal sp. PL34 clone PL34 2.30.4.1.5.009 OTU 3 seqs prokMSA_id:032762 AJ408069 equine intestinal sp. CL35 clone CL35 prokMSA_id:019514 AJ408197 equine intestinal sp. MW10 clone MW10 prokMSA_id:041381 AJ408231 equine intestinal sp. PL24 clone PL24 2.30.4.1.5.013 OTU 3 seqs prokMSA_id:021459 AF371621 clone p-952-s962-5 prokMSA_id:031083 AF371622 clone p-907-s962-5 prokMSA_id:039567 AF371623 clone p-986-s962-5 2.30.4.1.5.016 OTU 1 seq prokMSA_id:021868 AJ408107 equine intestinal sp. DL20 clone DL20 2.30.4.1.5.019 OTU 4 seqs prokMSA_id:034495 AB034117 rumen 2C28d-1 prokMSA_id:034221 AB034118 rumen 2C28d-12 prokMSA_id:023274 AB034119 rumen 2C28d-6 prokMSA_id:054674 AB034120 rumen 2C28d-5 2.30.4.1.5.020 OTU 1 seq prokMSA_id:024372 AJ408263 equine intestinal sp. PW17 clone PW17 2.30.4.1.5.021 OTU 1 seq prokMSA_id:025005 AF371617 clone p-1276-a5 2.30.4.1.5.022 OTU 2 seqs prokMSA_id:048918 AF371609 clone p-334-a3 prokMSA_id:026201 AF371610 clone p-969-s962-5 2.30.4.1.5.023 OTU 14 seqs prokMSA_id:027628 AJ408964 clone HuCA8 prokMSA_id:091785 AY338295 clone BREC_42 prokMSA_id:091132 AY338296 clone BREC_68 prokMSA_id:091191 AY338297 clone BREC_97 prokMSA_id:091209 AY338298 clone BREC_7 prokMSA_id:091590 AY338324 clone BREC_65 prokMSA_id:091289 AY338325 clone BREC_5 prokMSA_id:091814 AY338326 clone BREC_91 prokMSA_id:091333 AY338327 clone BREC_31 prokMSA_id:091345 AY338328 clone BREC_76 prokMSA_id:091004 AY338329 clone BREC_43 prokMSA_id:091316 AY338330 clone BREC_14 prokMSA_id:091835 AY338331 clone BREC_24 prokMSA_id:091990 AY338332 clone BREC_29 2.30.4.1.5.024 OTU 1 seq prokMSA_id:028914 AF371611 clone p-2418-55G5 2.30.4.1.5.025 OTU 1 seq prokMSA_id:029269 AJ408080 equine intestinal sp. CW10 clone CW10 2.30.4.1.5.026 OTU 1 seq prokMSA_id:068892 AJ408175 equine intestinal sp. ML29 clone ML29 2.30.4.1.5.027 OTU 1 seq prokMSA_id:030190 AJ408186 equine intestinal sp. ML40 clone ML40 2.30.4.1.5.028 OTU 1 seq prokMSA_id:030192 AJ408058 equine intestinal sp. CL24 clone CL24 2.30.4.1.5.029 OTU 1 seq prokMSA_id:030420 AJ408168 equine intestinal sp. ML22 clone ML22 2.30.4.1.5.032 OTU 11 seqs prokMSA_id:042286 AF132248 adhufec225 prokMSA_id:047398 AF153863 adhufec75.25 prokMSA_id:073965 AF371615 clone p-616-a5 prokMSA_id:020827 AJ270478 Butyrate-producing L1-93 prokMSA_id:026440 AJ270479 Butyrate-producing L1-952 prokMSA_id:072430 AJ270480 Butyrate-producing L1-81 prokMSA_id:034502 AJ270481 Butyrate-producing L1-810 prokMSA_id:032710 AJ270482 Butyrate-producing A2-183 prokMSA_id:070039 AJ312385 Roseburia intestinalis strain L1-82 prokMSA_id:058380 AJ312386 Roseburia intestinalis strain L1-8151 prokMSA_id:051641 AJ408986 clone HuCB1 2.30.4.1.5.033 OTU 1 seq prokMSA_id:034520 AF371612 clone p-2743-24E5 2.30.4.1.5.034 OTU 2 seqs prokMSA_id:034889 AB034121 rumen 2C28d-4 prokMSA_id:040464 AB034122 rumen 2C28d-7 2.30.4.1.5.036 OTU 1 seq prokMSA_id:036497 AJ428548 Pseudobutyrivibrio xylanovorans strain Mz 5 2.30.4.1.5.037 OTU 1 seq prokMSA_id:036823 AJ408155 equine intestinal sp. ML09 clone ML09 2.30.4.1.5.039 OTU 8 seqs prokMSA_id:044776 AF132260 adhufec310 prokMSA_id:037134 AF371625 clone p-2226-s959-3 prokMSA_id:069909 AJ011522 ramulus prokMSA_id:036059 AJ408980 clone HuCA29 prokMSA_id:092283 AY343183 clone REC6M_38 prokMSA_id:092585 AY343254 clone DONOR_8 prokMSA_id:093121 AY343292 clone DONOR_40 prokMSA_id:092714 AY343293 clone DONOR_55 2.30.4.1.5.040 OTU 1 seq prokMSA_id:038558 AF202258 oxidoreducens strain DAS110 2.30.4.1.5.041 OTU 2 seqs prokMSA_id:072301 AB034063 rumen 3C3d-8 prokMSA_id:073371 AB034064 rumen 4C3d-14 2.30.4.1.5.042 OTU 1 seq prokMSA_id:040098 AJ408244 equine intestinal sp. PL37 clone PL37 2.30.4.1.5.043 OTU 1 seq prokMSA_id:041063 AJ408065 equine intestinal sp. CL31 clone CL31 2.30.4.1.5.044 OTU 1 seq prokMSA_id:041204 AF371620 clone p-2354-55G5 2.30.4.1.5.045 OTU 1 seq prokMSA_id:041673 AF371605 clone p-2176-s959-3 2.30.4.1.5.046 OTU 1 seq prokMSA_id:041850 AJ408104 equine intestinal sp. DL17 clone DL17 2.30.4.1.5.047 OTU 1 seq prokMSA_id:042360 AF371627 clone p-2205-s959-3 2.30.4.1.5.048 OTU 3 seqs prokMSA_id:073645 AF385507 sp. oral clone DN050 prokMSA_id:070087 AF385570 sp. oral clone EH006 prokMSA_id:044493 AF399956 Shuttleworthia satelles 2.30.4.1.5.049 OTU 1 seq prokMSA_id:045296 AF371602 clone p-61-a5 2.30.4.1.5.050 OTU 1 seq prokMSA_id:045995 AJ408239 equine intestinal sp. PL32 clone PL32 2.30.4.1.5.051 OTU 1 seq prokMSA_id:055294 AY100587 clone cvf63067 2.30.4.1.5.052 OTU 1 seq prokMSA_id:048572 AJ428551 Pseudobutyrivibrio xylanovorans strain JK 633 2.30.4.1.5.053 OTU 1 seq prokMSA_id:049854 AF371629 clone p-3848-23G3 2.30.4.1.5.054 OTU 1 seq prokMSA_id:050416 AF371630 clone p-1584-c5 2.30.4.1.5.056 OTU 19 seqs prokMSA_id:070078 AF132286 adhufec8 prokMSA_id:073370 AF371600 clone p-1701-b3 prokMSA_id:052305 AF371603 clone p-1869-s962-3 prokMSA_id:055593 AF530363 clone cadhufec18h03sav prokMSA_id:035147 AJ270475 Butyrate-producing A1-86 prokMSA_id:044330 AJ270476 Butyrate-producing T1-815 prokMSA_id:032556 AJ270477 Butyrate-producing L2-21 prokMSA_id:036445 AJ408994 clone HuCB14 prokMSA_id:081674 AY169428 rectale prokMSA_id:088070 AY328375 inhufecB-36 prokMSA_id:092168 AY343182 clone REC6M_31 prokMSA_id:092626 AY343251 clone DONOR_53 prokMSA_id:092683 AY343252 clone DONOR_86 prokMSA_id:092423 AY343253 clone DONOR_80 prokMSA_id:092853 AY343281 clone DONOR_70 prokMSA_id:092834 AY343295 clone DONOR_94 prokMSA_id:092704 AY343303 clone DONOR_61 prokMSA_id:097833 AY371264 clone Dpcom126 prokMSA_id:096988 AY388442 clone Adhuleft47 2.30.4.1.5.058 OTU 1 seq prokMSA_id:014041 AF001695 clone RC32. 2.30.4.1.5.059 OTU 1 seq prokMSA_id:014043 AF001754 clone RF22. 2.30.4.1.5.060 OTU 1 seq prokMSA_id:014047 AF001716 clone RC27. 2.30.4.1.5.063 OTU 40 seqs prokMSA_id:014052 AB003392 Butyrivibrio sp. str. sp45. prokMSA_id:014053 AB003393 Butyrivibrio sp. str. sp42. prokMSA_id:014048 AB004910 Butyrivibrio fibrisolvens str. T63. prokMSA_id:014062 AB009190 clone RFN34. prokMSA_id:023954 AB034066 rumen 4C3d-11 prokMSA_id:042103 AB034067 rumen 4C3d-7 prokMSA_id:023234 AB056674 equine intestinal clone:YT16 prokMSA_id:090302 AB113702 clone:OAB15 prokMSA_id:088365 AB113708 clone:OAB21 prokMSA_id:088649 AB113730 clone:OAB44 prokMSA_id:014042 AF001704 clone RC13. prokMSA_id:014049 AF105403 Butyrivibrio fibrisolvens str. LP1265. prokMSA_id:014051 AF125217 Butyrivibrio fibrisolvens str. B835. prokMSA_id:019835 AF202260 Pseudobutyrivibrio ruminis strain pC-XS2 prokMSA_id:074850 AF202261 Pseudobutyrivibrio ruminis strain pC-XS6 prokMSA_id:026725 AF202262 Pseudobutyrivibrio ruminis strain pC-XS7 prokMSA_id:036852 AF264034 Butyrivibrio cf. fibrisolvens EAT6 prokMSA_id:052841 AF349660 Butyrivibrio fibrisolvens strain OB146 prokMSA_id:045953 AJ250365 Butyrivibrio fibrisolvens strain 16.4 prokMSA_id:042110 AJ270493 Butyrivibrio fibrisolvens strain 1.230 prokMSA_id:018666 AJ428549 Pseudobutyrivibrio ruminis strain JK 626 prokMSA_id:021769 AJ428550 Pseudobutyrivibrio xylanovorans strain JK 23/2 prokMSA_id:070650 AY029616 Butyrivibrio fibrisolvens prokMSA_id:089538 AY311726 clone YRCE17 prokMSA_id:014040 U41167 Butyrivibrio fibrisolvens str. 49. prokMSA_id:014059 U41168 Butyrivibrio fibrisolvens str. OB156. prokMSA_id:014058 U41169 Butyrivibrio fibrisolvens str. OB189. prokMSA_id:014067 U41170 Butyrivibrio fibrisolvens str. OB157. prokMSA_id:014066 U41171 Butyrivibrio fibrisolvens str. OB192. prokMSA_id:014054 U77337 Butyrivibrio fibrisolvens str. AR27. prokMSA_id:014065 U77338 Butyrivibrio fibrisolvens str. CF3. prokMSA_id:014045 U77339 Butyrivibrio fibrisolvens str. H10b. prokMSA_id:014055 U77340 Butyrivibrio fibrisolvens str. OB236. prokMSA_id:014056 U77342 Butyrivibrio fibrisolvens str. OR35. prokMSA_id:014057 U77343 Butyrivibrio fibrisolvens str. OR79. prokMSA_id:014044 X89977 Butyrivibrio fibrisolvens NCDO 2223. prokMSA_id:014050 X89978 Butyrivibrio fibrisolvens NCDO 2249. prokMSA_id:014063 X89979 Butyrivibrio fibrisolvens NCDO 2397. prokMSA_id:014061 X89980 Butyrivibrio fibrisolvens str. Bu 21 NCDO 2399. prokMSA_id:014046 X95893 Pseudobutyrivibrio ruminis str. A12-1 DSM 9787 . 2.30.4.1.5.064 OTU 1 seq prokMSA_id:014060 AF018549 clone JW18. 2.30.4.1.5.065 OTU 1 seq prokMSA_id:014064 U81763 clone vadinBC06. 2.30.4.1.5.066 OTU 1 seq prokMSA_id:071632 AF371628 clone p-341-a3 2.30.4.1.5.067 OTU 2 seqs prokMSA_id:072630 AF287776 saburreum-like sp. oral clone CK004 prokMSA_id:073120 AF481219 Lachnospiraceae oral clone MCE9_104 E2 2.30.4.1.5.068 OTU 1 seq prokMSA_id:081139 AY169412 Butyrivibrio fibrisolvens 2.30.4.1.5.069 OTU 2 seqs prokMSA_id:088978 AY323228 Lachnospiraceae AIP 354.02 prokMSA_id:092462 AY349377 sp. oral clone JN088 2.30.4.1.5.070 OTU 1 seq prokMSA_id:090635 AY311600 clone YRCA01 2.30.4.1.5.071 OTU 3 seqs prokMSA_id:092138 AY343134 clone REC1M_46 prokMSA_id:092054 AY343135 clone REC1M_47 prokMSA_id:092606 AY343316 clone DONOR_77 2.30.4.1.5.072 OTU 1 seq prokMSA_id:092464 AY347530 Butyrivibrio fibrisolvens strain 0/10 2.30.4.1.5.999 poor quality 69 seqs prokMSA_id:062219 AB064721 sp. clone:NB2A11 prokMSA_id:056454 AB064732 firmicute clone:NS2F5 prokMSA_id:062209 AB064733 firmicute clone:NB2C5 prokMSA_id:062208 AB064734 firmicute clone:NO15 prokMSA_id:058030 AB064884 sp. CB4 prokMSA_id:062082 AB064887 Human intestinal firmicute CO13 prokMSA_id:056315 AB075641 chicken cecal clone:1H2 prokMSA_id:086887 AB099745 clone: OLDC-E4 prokMSA_id:087206 AB099747 clone: OLDA-A9 prokMSA_id:095104 AB120795 Gram-positive clone:MC82F11 prokMSA_id:049953 AF052414 A13 prokMSA_id:032534 AF052419 A22 prokMSA_id:071624 AF125899 Butyrivibrio fibrisolvens strain A46 prokMSA_id:040324 AF125900 Butyrivibrio fibrisolvens strain CF3 prokMSA_id:022507 AF125901 Butyrivibrio fibrisolvens strain H17c prokMSA_id:027229 AF148320 Butyrivibrio fibrisolvens prokMSA_id:024657 AF261791 swine feces F22 prokMSA_id:026840 AF261798 manure pit P39 prokMSA_id:032367 AF293924 rumen clone 22 prokMSA_id:072189 AF293934 rumen clone 32 prokMSA_id:017899 AF293942 rumen clone 40 prokMSA_id:071705 AF376300 ckncm067-C2.3 prokMSA_id:084111 AF499882 clone ABLC21 prokMSA_id:023258 AJ241734 microorganism clone Cal68 prokMSA_id:040890 AJ302168 Butyrivibrio fibrisolvens isolate JK86 prokMSA_id:043278 AJ302169 Butyrivibrio fibrisolvens isolate JK10/1 prokMSA_id:053815 AJ302170 Butyrivibrio fibrisolvens isolate JK626 prokMSA_id:027279 AJ302171 Butyrivibrio fibrisolvens isolate JK633 prokMSA_id:024871 AJ418955 clone k018 prokMSA_id:032713 AJ419085 clone kl326 prokMSA_id:018800 AY006486 rumen prokMSA_id:035528 AY006508 rumen prokMSA_id:039884 AY006514 rumen prokMSA_id:041752 AY006570 rumen prokMSA_id:030019 AY006581 rumen prokMSA_id:029957 AY006586 rumen prokMSA_id:046298 AY006645 rumen prokMSA_id:024957 AY006651 rumen prokMSA_id:023239 AY006682 rumen prokMSA_id:039303 AY006741 rumen prokMSA_id:048990 AY006759 rumen prokMSA_id:041532 AY006771 rumen prokMSA_id:025100 AY006776 rumen prokMSA_id:052390 AY006777 rumen prokMSA_id:051080 AY006802 rumen prokMSA_id:037751 AY006844 rumen prokMSA_id:074695 AY006849 rumen prokMSA_id:074477 AY006861 rumen prokMSA_id:050672 AY006863 rumen prokMSA_id:097315 AY239437 clone rc3-33 complete prokMSA_id:090749 AY311613 clone YRCB06 prokMSA_id:089082 AY311617 clone YRCB16 prokMSA_id:088755 AY311622 clone YRCB32 prokMSA_id:089184 AY311636 clone YRCB52 prokMSA_id:090501 AY311637 clone YRCB53 prokMSA_id:088619 AY311642 clone YRCC03 prokMSA_id:089891 AY311653 clone YRCC25 prokMSA_id:090102 AY311659 clone YRCC33 prokMSA_id:088396 AY311675 clone YRCC55 prokMSA_id:089338 AY311687 clone YRCD19 prokMSA_id:090113 AY311731 clone YRCE24 prokMSA_id:090262 AY311743 clone YRCE43 prokMSA_id:089437 AY315374 rumen clone JRCK50 prokMSA_id:092675 AY343294 clone DONOR_44 prokMSA_id:096289 AY388410 clone Adhuright29 prokMSA_id:014037 L14676 Roseburia cecicola ATCC 33874 . prokMSA_id:014039 L34623 ramulus ATCC 29099 . prokMSA_id:014038 L34627 rectale ATCC 33656 . prokMSA_id:018494 U81686 clone vadinBD06 2.30.4.1.6 EUB.VENTRIOSUM_SUBGROUP 63 seqs 2.30.4.1.6.001 OTU 1 seq prokMSA_id:069111 AB094152 clone:C-95 2.30.4.1.6.002 OTU 1 seq prokMSA_id:016477 AF202259 oxidoreducens strain G2-2 2.30.4.1.6.004 OTU 1 seq prokMSA_id:020288 AJ408167 equine intestinal sp. ML21 clone ML21 2.30.4.1.6.005 OTU 1 seq prokMSA_id:073986 AB094164 clone:C-30 2.30.4.1.6.007 OTU 1 seq prokMSA_id:027728 AJ408209 equine intestinal sp. PL01 clone PL01 2.30.4.1.6.008 OTU 1 seq prokMSA_id:029079 AF371638 clone p-1894-s962-3 2.30.4.1.6.009 OTU 1 seq prokMSA_id:029903 AF371586 clone p-190-o5 2.30.4.1.6.010 OTU 1 seq prokMSA_id:031249 AF371640 clone p-1051-a5 2.30.4.1.6.012 OTU 4 seqs prokMSA_id:031621 AF149884 08.96.4 complete prokMSA_id:048557 AF275915 AA04 prokMSA_id:074649 AF332714 clone UASB_brew_B16 prokMSA_id:016944 AJ270487 Butyrate-producing L1-92 2.30.4.1.6.013 OTU 6 seqs prokMSA_id:050000 AF132252 adhufec24 prokMSA_id:074755 AF530292 clone cadhufec001h7 prokMSA_id:033369 AJ270488 Butyrate-producing L2-12 prokMSA_id:092066 AY343184 clone REC6M_60 prokMSA_id:096239 AY388454 clone Adhuleft85 prokMSA_id:014072 NONE ventriosum DSM 3988 . 2.30.4.1.6.014 OTU 1 seq prokMSA_id:033833 AF371673 clone p-1321-a5 2.30.4.1.6.017 OTU 1 seq prokMSA_id:037010 AB034046 rumen 5C0d-13 2.30.4.1.6.018 OTU 1 seq prokMSA_id:037397 AJ408146 equine intestinal sp. DW21 clone DW21 2.30.4.1.6.019 OTU 1 seq prokMSA_id:039205 AF132262 adhufec335 2.30.4.1.6.022 OTU 1 seq prokMSA_id:072606 AF275914 AA02 2.30.4.1.6.023 OTU 1 seq prokMSA_id:042123 AJ408052 equine intestinal sp. CL17 clone CL17 2.30.4.1.6.024 OTU 1 seq prokMSA_id:045535 AF441881 clone CD13F7 2.30.4.1.6.025 OTU 1 seq prokMSA_id:047001 AJ408177 equine intestinal sp. ML31 clone ML31 2.30.4.1.6.026 OTU 1 seq prokMSA_id:049088 AF132250 adhufec236 2.30.4.1.6.027 OTU 1 seq prokMSA_id:050208 AF371669 clone p-2169-s959-3 2.30.4.1.6.029 OTU 9 seqs prokMSA_id:069482 AB094161 clone:C-61 prokMSA_id:073626 AF132254 adhufec25 prokMSA_id:053144 AF153862 adhufec71.25 prokMSA_id:070522 AF530342 clone cadhufec17e01sav prokMSA_id:072481 AJ408972 clone HuCA20 prokMSA_id:091579 AY338354 clone BREC_87 prokMSA_id:092622 AY343129 clone REC1M_15 prokMSA_id:096104 AY388437 clone Adhuleft30 prokMSA_id:014068 NONE hadrum ATCC 29173 . 2.30.4.1.6.030 OTU 1 seq prokMSA_id:014069 AF028351 Clostridium indolis str. CM971. 2.30.4.1.6.031 OTU 1 seq prokMSA_id:077449 AF349416 A13 2.30.4.1.6.032 OTU 1 seq prokMSA_id:077458 AF349427 A47 2.30.4.1.6.033 OTU 1 seq prokMSA_id:081051 AB100463 clone: Rs-L15 2.30.4.1.6.034 OTU 1 seq prokMSA_id:083220 AY231309 clone ER1_9 2.30.4.1.6.035 OTU 1 seq prokMSA_id:094794 AJ583198 Firmicute clone S15B-MN35 2.30.4.1.6.999 poor quality 20 seqs prokMSA_id:069702 AB064714 firmicute clone:NB2G8 prokMSA_id:069185 AB064715 firmicute clone:NO16 prokMSA_id:070718 AB064716 firmicute clone:NO13 prokMSA_id:073299 AB064717 firmicute clone:NB4B8 prokMSA_id:071503 AB064882 Human intestinal firmicute CO31 prokMSA_id:072043 AB064883 Human intestinal firmicute CO35 prokMSA_id:065272 AB075664 chicken cecal clone:2C8 prokMSA_id:070263 AB080865 human intestinal clone:JW1A1 prokMSA_id:038800 AF218222 clone HSIII prokMSA_id:077516 AF349419 A20 prokMSA_id:069509 AF365645 clone BM89DS1BC4 prokMSA_id:084002 AF499841 clone LCLC2 prokMSA_id:085085 AF499856 clone LCRC9 prokMSA_id:025665 AJ418949 clone k010 prokMSA_id:018250 AY006597 rumen prokMSA_id:085773 AY092272 clone BI137 prokMSA_id:090257 AY304023 soil clone Dpcom62 prokMSA_id:095313 AY388418 clone Adhuright63 prokMSA_id:014071 L34421 ventriosum ATCC 27560 . prokMSA_id:014070 L34626 uniforme ATCC 35992 . 2.30.4.1.7 LCN.MULTIPARA_SUBGROUP 42 seqs 2.30.4.1.7.002 OTU 1 seq prokMSA_id:068841 AF371648 clone p-1594-c5 2.30.4.1.7.003 OTU 1 seq prokMSA_id:022236 AF371647 clone p-7-a5 2.30.4.1.7.005 OTU 9 seqs prokMSA_id:058012 AB094163 clone:C-72 prokMSA_id:051050 AF132285 adhufec85 prokMSA_id:034247 AF371644 clone p-1518-b5 prokMSA_id:033320 AF371645 clone p-1692-b3 prokMSA_id:026597 AF371646 clone p-1750-b3 prokMSA_id:061050 AF530350 clone cadhufec18c07sav prokMSA_id:021126 AJ408985 clone HuCA40 prokMSA_id:091008 AY179348 clone WYSK 0001 prokMSA_id:091803 AY338355 clone BREC_37 2.30.4.1.7.006 OTU 3 seqs prokMSA_id:042680 AF371641 clone p-327-a3 prokMSA_id:072033 AF371642 clone p-189-o5 prokMSA_id:046667 AF371643 clone p-268-o5 2.30.4.1.7.007 OTU 1 seq prokMSA_id:058017 AB094154 clone:C-2 2.30.4.1.7.008 OTU 1 seq prokMSA_id:042333 AJ408262 equine intestinal sp. PW16 clone PW16 2.30.4.1.7.009 OTU 1 seq prokMSA_id:047452 AF371664 clone p-17-a5 2.30.4.1.7.010 OTU 1 seq prokMSA_id:050530 AF371649 clone p-2016-s959-5 2.30.4.1.7.011 OTU 1 seq prokMSA_id:052718 AJ408142 equine intestinal sp. DW17 clone DW17 2.30.4.1.7.012 OTU 1 seq prokMSA_id:014073 X67097 "pectinii" str. P-1 DSM 6788. 2.30.4.1.7.013 OTU 1 seq prokMSA_id:082283 AY169414 Lachnospira pectinoschiza 2.30.4.1.7.014 OTU 1 seq prokMSA_id:084675 AF499905 clone ABLCf6 2.30.4.1.7.015 OTU 1 seq prokMSA_id:091314 AY338353 clone BREC_56 2.30.4.1.7.016 OTU 1 seq prokMSA_id:091359 AY179350 clone WYSK 0003 2.30.4.1.7.999 poor quality 18 seqs prokMSA_id:062207 AB064736 firmicute clone:NB4A11 prokMSA_id:056059 AB064737 firmicute clone:NS1D8 prokMSA_id:087567 AB099743 clone: OLDA-C4 prokMSA_id:087294 AB099744 clone: OLDA-E2 prokMSA_id:032633 AF376361 ckncm128-F1M.1A3 prokMSA_id:072491 AH000855 Lachnospira multiparus prokMSA_id:070223 AH000856 Lachnospira multiparus prokMSA_id:081287 AJ549100 clone E20 prokMSA_id:083844 AY092256 clone BM91 prokMSA_id:083253 AY092257 clone BM92 prokMSA_id:097783 AY239430 clone rc4-12 complete prokMSA_id:014077 L14675 Lachnospira pectinoschiza str. 150-1. prokMSA_id:014075 L14711 Lachnospira multipara str. 40. prokMSA_id:070545 L14712 Lachnospira multiparus prokMSA_id:070904 L14713 Lachnospira multiparus prokMSA_id:014074 L14719 Lachnospira multipara str. D32 ATCC 19207 . prokMSA_id:073140 L14720 Lachnospira multiparus prokMSA_id:014076 L34420 eligens ATCC 27750 . 2.30.4.1.8 C.POLYSACCHAROLYTICUM_SUBGROUP 136 seqs 2.30.4.1.8.002 OTU 1 seq prokMSA_id:016512 AF371660 clone p-2566-9F5 2.30.4.1.8.004 OTU 1 seq prokMSA_id:017752 AF376435 ckncm202-F4M.1C7 2.30.4.1.8.006 OTU 1 seq prokMSA_id:019446 AF371655 clone p-379-o3 2.30.4.1.8.007 OTU 1 seq prokMSA_id:020026 AB056169 rumen clone:8ER 2.30.4.1.8.008 OTU 1 seq prokMSA_id:020144 AJ408174 equine intestinal sp. ML28 clone ML28 2.30.4.1.8.011 OTU 8 seqs prokMSA_id:029242 AB056171 rumen clone:10ER prokMSA_id:016408 AB056172 rumen clone:11ER prokMSA_id:020164 AB056173 rumen clone:12ER prokMSA_id:050991 AB056174 rumen clone:13ER prokMSA_id:039757 AB056175 rumen clone:14ER prokMSA_id:045808 AB056176 rumen clone:15ER prokMSA_id:038136 AB056177 rumen clone:16ER prokMSA_id:017298 AB056178 rumen clone:17ER 2.30.4.1.8.012 OTU 1 seq prokMSA_id:020421 AF371657 clone p-444-o3 2.30.4.1.8.013 OTU 7 seqs prokMSA_id:050719 AF132276 adhufec57 prokMSA_id:051637 AF153855 adhufec29.25 prokMSA_id:034731 AF371650 clone p-1895-s962-3 prokMSA_id:022602 AF371651 clone p-917-s962-5 prokMSA_id:049521 AF371652 clone p-6-a5 prokMSA_id:061049 AF530348 clone cadhufec18b07sav prokMSA_id:027930 AJ270489 Butyrate-producing A2-166 2.30.4.1.8.014 OTU 3 seqs prokMSA_id:032471 AB034068 rumen 3C3d-14 prokMSA_id:023219 AB034069 rumen 5C3d-11 prokMSA_id:014082 AF001711 clone RC21. 2.30.4.1.8.015 OTU 1 seq prokMSA_id:025904 AF371659 clone p-197-o5 2.30.4.1.8.016 OTU 1 seq prokMSA_id:025995 AB034025 rumen 4C0d-12 2.30.4.1.8.018 OTU 1 seq prokMSA_id:026949 AJ408220 equine intestinal sp. PL12 clone PL12 2.30.4.1.8.020 OTU 1 seq prokMSA_id:027706 AJ408179 equine intestinal sp. ML33 clone ML33 2.30.4.1.8.021 OTU 1 seq prokMSA_id:027817 AB056645 fiber-attaching rumen clone:SY31 2.30.4.1.8.022 OTU 8 seqs prokMSA_id:029597 AF052409 A07 complete prokMSA_id:052410 AF371658 clone p-2001-s959-5 prokMSA_id:070163 AJ270490 Butyrate-producing L2-7 prokMSA_id:017859 AJ315482 isolate HuCC15 prokMSA_id:028879 AJ408968 clone HuCA15 prokMSA_id:027613 AJ409000 clone HuCB26 prokMSA_id:092859 AY343227 clone REC6M_81 prokMSA_id:095764 AY388430 clone Adhuleft09 2.30.4.1.8.023 OTU 1 seq prokMSA_id:031119 AJ408095 equine intestinal sp. DL07 clone DL07 2.30.4.1.8.024 OTU 1 seq prokMSA_id:031149 AJ408072 equine intestinal sp. CW02 clone CW02 2.30.4.1.8.025 OTU 8 seqs prokMSA_id:014081 AB008552 ruminantium str. GA 195 ATCC 17233 . prokMSA_id:034599 AB056162 rumen clone:1ER prokMSA_id:031710 AB056163 rumen clone:2ER prokMSA_id:036238 AB056164 rumen clone:3ER prokMSA_id:048656 AB056165 rumen clone:4ER prokMSA_id:031513 AB056166 rumen clone:5ER prokMSA_id:039286 AB056167 rumen clone:6ER prokMSA_id:031834 AB056168 rumen clone:7ER 2.30.4.1.8.026 OTU 1 seq prokMSA_id:034139 AF371678 clone p-1573-b5 2.30.4.1.8.028 OTU 4 seqs prokMSA_id:014085 AF052416 clone A19. prokMSA_id:035020 AF132241 adhufec157 prokMSA_id:026113 AF153856 adhufec46.25 prokMSA_id:095721 AY388429 clone Adhuleft08 2.30.4.1.8.029 OTU 1 seq prokMSA_id:037633 AF371656 clone p-2025-s959-5 2.30.4.1.8.030 OTU 1 seq prokMSA_id:040124 AJ270491 Butyrate-producing L2-50 2.30.4.1.8.031 OTU 2 seqs prokMSA_id:040708 AF385577 Catonella sp. oral clone EZ006 prokMSA_id:014096 X87151 Catonella morbi ATCC 51271 . 2.30.4.1.8.032 OTU 1 seq prokMSA_id:041212 AF132257 adhufec295 2.30.4.1.8.033 OTU 1 seq prokMSA_id:045430 AJ408048 equine intestinal sp. CL13 clone CL13 2.30.4.1.8.034 OTU 1 seq prokMSA_id:045915 AB056640 fiber-attaching rumen clone:SY24 2.30.4.1.8.035 OTU 1 seq prokMSA_id:046273 AF441880 firmicute clone CD13F11 2.30.4.1.8.036 OTU 1 seq prokMSA_id:046613 AB056170 rumen clone:9ER 2.30.4.1.8.037 OTU 1 seq prokMSA_id:047274 AB045746 fiber-attaching rumen SY13 2.30.4.1.8.038 OTU 1 seq prokMSA_id:047342 AJ408053 equine intestinal sp. CL18 clone CL18 2.30.4.1.8.039 OTU 2 seqs prokMSA_id:068840 AF371653 clone p-339-a3 prokMSA_id:047862 AF371654 clone p-600-a5 2.30.4.1.8.040 OTU 1 seq prokMSA_id:048583 AF385556 Catonella sp. oral clone BR063 2.30.4.1.8.041 OTU 1 seq prokMSA_id:051382 AJ408042 equine intestinal sp. CL07 clone CL07 2.30.4.1.8.042 OTU 1 seq prokMSA_id:062513 AF527773 MDA2477 2.30.4.1.8.043 OTU 1 seq prokMSA_id:014079 AF001738 clone RF5. 2.30.4.1.8.044 OTU 1 seq prokMSA_id:014080 AF001756 clone RF24. 2.30.4.1.8.045 OTU 1 seq prokMSA_id:014083 AF001722 clone RC36. 2.30.4.1.8.046 OTU 1 seq prokMSA_id:014084 AF018559 clone JW33. 2.30.4.1.8.047 OTU 1 seq prokMSA_id:014086 D14148 Coprococcus eutactus ATCC 27759 . 2.30.4.1.8.048 OTU 1 seq prokMSA_id:014088 AF018547 clone JW11. 2.30.4.1.8.049 OTU 2 seqs prokMSA_id:014089 X71858 Clostridium polysaccharolyticum ATCC 33142 . prokMSA_id:014090 X77839 Clostridium polysaccharolyticum DSM 1801 . 2.30.4.1.8.050 OTU 1 seq prokMSA_id:014091 AF001702 clone RC10. 2.30.4.1.8.051 OTU 1 seq prokMSA_id:014092 AF018553 clone JW24. 2.30.4.1.8.052 OTU 2 seqs prokMSA_id:014093 AF157054 plexicaudatum str. ASF 492. prokMSA_id:014094 AF157058 plexicaudatum ATCC 27514. 2.30.4.1.8.053 OTU 1 seq prokMSA_id:071783 AF376231 ckncm327-B6-72 2.30.4.1.8.054 OTU 1 seq prokMSA_id:073894 AF287769 Catonella sp. oral clone AH153 2.30.4.1.8.055 OTU 1 seq prokMSA_id:074874 AB045741 fiber-attaching rumen SY7 2.30.4.1.8.056 OTU 1 seq prokMSA_id:092316 AY349369 Catonella sp. oral clone FL037 2.30.4.1.8.057 OTU 1 seq prokMSA_id:095009 AB120793 Gram-positive clone:MC41E02 2.30.4.1.8.058 OTU 1 seq prokMSA_id:097351 AY239426 clone rc2-27 complete 2.30.4.1.8.999 poor quality 50 seqs prokMSA_id:073304 AB064713 firmicute clone:NO2-51 prokMSA_id:062221 AB064718 firmicute clone:NO1B9 prokMSA_id:056476 AB064719 sp. clone:NO49 prokMSA_id:062220 AB064720 firmicute clone:NO1A11 prokMSA_id:062171 AB064779 firmicute clone:NB5D7 prokMSA_id:065290 AB075637 chicken cecal clone:2C2 prokMSA_id:065291 AB075638 chicken cecal clone:2C5 prokMSA_id:065276 AB075657 chicken cecal clone:1G4 prokMSA_id:058708 AB080875 human intestinal clone:JW2C7 prokMSA_id:087002 AB099741 clone: OLDA-B9 prokMSA_id:087648 AB099748 clone: OLDA-C9 prokMSA_id:087330 AB099749 clone: OLDC-C9 prokMSA_id:094715 AB120796 Gram-positive clone:MC81C03 prokMSA_id:026050 AF195426 CFB group kpj254f prokMSA_id:029494 AF261794 manure pit P3OTU1 prokMSA_id:017138 AF293907 rumen clone 5 prokMSA_id:018727 AF293909 rumen clone 7 prokMSA_id:043767 AF293927 rumen clone 25 prokMSA_id:018106 AF293938 rumen clone 36 prokMSA_id:020620 AF376153 ckncm249-c8c5 prokMSA_id:040748 AF376272 ckncm039-F3M.14 prokMSA_id:019579 AF376273 ckncm040-MC.C8 prokMSA_id:070931 AF376301 ckncm068-F1M.16 prokMSA_id:046253 AF376325 ckncm092-B412.1A10 prokMSA_id:019068 AF376350 ckncm117-C21.A12 prokMSA_id:043868 AF376424 ckncm191-F3M.1H9 prokMSA_id:062645 AF515495 clone 10B11 prokMSA_id:055450 AF547395 low G+C Gram-positive clone CL-S63-225 prokMSA_id:044285 AJ418947 clone k006 prokMSA_id:046229 AJ418972 clone k055 prokMSA_id:022298 AJ419018 clone kl046 prokMSA_id:044406 AY006605 rumen prokMSA_id:018036 AY006641 rumen prokMSA_id:052169 AY006754 rumen prokMSA_id:020465 AY038540 clone CD1E3 prokMSA_id:098736 AY239441 clone rc2-3 complete prokMSA_id:096999 AY239463 sp. cTPY-18 prokMSA_id:088733 AY311638 clone YRCB55 prokMSA_id:089500 AY311674 clone YRCC54 prokMSA_id:090593 AY311710 clone YRCD54 prokMSA_id:088799 AY311747 clone YRCE49 prokMSA_id:090162 AY315275 rumen clone JRCI29 prokMSA_id:088829 AY315350 rumen clone JRCK16 prokMSA_id:090057 AY327240 clone ZB15 prokMSA_id:097137 AY388420 clone Adhuright71 prokMSA_id:014087 L34418 Clostridium herbivorans str. 54408 ATCC 49925 . prokMSA_id:014078 L34621 hallii ATCC 27751 . prokMSA_id:014095 M59083 Acetitomaculum ruminis str. 139B ATCC 43876 . prokMSA_id:034915 U58220 low G+C gram-positive small subunit prokMSA_id:018110 U58221 low G+C gram-positive small subunit 2.30.4.1.9 C.AMINOVALERICUM_SUBGROUP 74 seqs 2.30.4.1.9.001 OTU 1 seq prokMSA_id:016766 AF371670 clone p-1807-c3 2.30.4.1.9.002 OTU 1 seq prokMSA_id:018245 AB062822 clone:BCf4-09 2.30.4.1.9.003 OTU 3 seqs prokMSA_id:014098 AF153857 clone adhufec37.25. prokMSA_id:041178 AF371674 clone p-211-o5 prokMSA_id:020939 AJ409006 clone HuCB56 2.30.4.1.9.004 OTU 1 seq prokMSA_id:021698 AF371676 clone p-273-o5 2.30.4.1.9.005 OTU 1 seq prokMSA_id:023653 AJ229214 from anoxic bulk soil clone BSV70 2.30.4.1.9.006 OTU 1 seq prokMSA_id:024243 AF401542 clone g14Br5 2.30.4.1.9.007 OTU 1 seq prokMSA_id:028479 AB078860 Clostridiaceae str. 80Wc 2.30.4.1.9.008 OTU 1 seq prokMSA_id:028702 AF371672 clone p-322-a3 2.30.4.1.9.009 OTU 1 seq prokMSA_id:032228 AF371637 clone p-1529-b5 2.30.4.1.9.010 OTU 1 seq prokMSA_id:035649 AJ289204 RSa32 2.30.4.1.9.011 OTU 1 seq prokMSA_id:036892 AF371677 clone p-2409-55G5 2.30.4.1.9.012 OTU 1 seq prokMSA_id:038211 AJ229203 from anoxic bulk soil clone BSV51 2.30.4.1.9.013 OTU 1 seq prokMSA_id:041849 AJ408161 equine intestinal sp. ML15 clone ML15 2.30.4.1.9.014 OTU 1 seq prokMSA_id:057880 AB094344 clone:C-1 2.30.4.1.9.015 OTU 1 seq prokMSA_id:048887 AJ229210 from anoxic bulk soil clone BSV61 2.30.4.1.9.016 OTU 1 seq prokMSA_id:049154 AJ289215 RSb40 2.30.4.1.9.017 OTU 1 seq prokMSA_id:049372 AJ408150 equine intestinal sp. ML04 clone ML04 2.30.4.1.9.018 OTU 1 seq prokMSA_id:050468 AF371575 clone p-1921-s962-3 2.30.4.1.9.019 OTU 1 seq prokMSA_id:050757 AF371671 clone p-3181-SwA3 2.30.4.1.9.020 OTU 1 seq prokMSA_id:051036 AJ408084 equine intestinal sp. CW15 clone CW15 2.30.4.1.9.021 OTU 1 seq prokMSA_id:056460 AF507902 Verrucomicrobia clone ML623J-51 2.30.4.1.9.022 OTU 1 seq prokMSA_id:014099 X71853 Clostridium populeti ATCC 35295 . 2.30.4.1.9.023 OTU 1 seq prokMSA_id:014100 U68616 clone M30. 2.30.4.1.9.024 OTU 1 seq prokMSA_id:014101 AJ229234 Clostridium XB90 str. XB90. 2.30.4.1.9.025 OTU 2 seqs prokMSA_id:014103 AF116920 str. HESP1 DSM 12503. prokMSA_id:084603 AY244954 rumen clone BE38 2.30.4.1.9.026 OTU 1 seq prokMSA_id:014105 X73436 Clostridium aminovalericum DSM 1283 . 2.30.4.1.9.027 OTU 1 seq prokMSA_id:071089 AF371665 clone p-30-a5 2.30.4.1.9.028 OTU 1 seq prokMSA_id:075336 AY147272 clone THM-2 2.30.4.1.9.029 OTU 1 seq prokMSA_id:094563 AB120797 Gram-positive clone:MC41E03 2.30.4.1.9.030 OTU 2 seqs prokMSA_id:097059 AY330123 Clostridium sp. clone AC014 prokMSA_id:095597 AY330126 Clostridium sp. clone AC036 2.30.4.1.9.031 OTU 3 seqs prokMSA_id:097283 AB114232 Clostridium sp. Kas107-2 prokMSA_id:098138 AB114233 Clostridium sp. OkiF101 prokMSA_id:096817 AB114234 Clostridium sp. OkiN108 2.30.4.1.9.032 OTU 1 seq prokMSA_id:097286 AY239432 clone rc5-20 complete 2.30.4.1.9.999 poor quality 36 seqs prokMSA_id:014104 AF020431 Clostridium phytofermentans str. ISDg ATCC 700394. prokMSA_id:043913 AF226202 maize root Zmrc156 prokMSA_id:072867 AF376255 ckncm022-C1.8 prokMSA_id:024474 AF445265 Swine manure pit PPC24 prokMSA_id:032783 AF445266 Swine manure pit PPC28 prokMSA_id:049803 AF445267 Swine manure pit PPC25 prokMSA_id:031731 AF445268 Swine manure pit PPC29 prokMSA_id:049084 AF445269 Swine manure pit PPC26 prokMSA_id:023829 AF473925 firmicute 128-32 prokMSA_id:049983 AF473970 firmicute 34-42 prokMSA_id:072658 AF544868 Gram-positive clone D1-2 prokMSA_id:069733 AF544869 Gram-positive clone D1-4 prokMSA_id:074065 AF544875 Gram-positive clone D1-16 prokMSA_id:069319 AF544923 Gram-positive clone 3-6-4 prokMSA_id:072552 AF544944 Gram-positive clone 14-17 prokMSA_id:046617 AJ287687 low G+C Gram-positive 146ev prokMSA_id:031225 AJ289223 RSD7 prokMSA_id:036191 AJ400272 clone L11-10 prokMSA_id:052750 AY006806 rumen prokMSA_id:050608 AY050176 Clostridiaceae clone SRB-1 prokMSA_id:083087 AY092258 clone BM128 prokMSA_id:084598 AY092259 clone BM102 prokMSA_id:085161 AY092260 clone BM151 prokMSA_id:082488 AY092261 clone BM10 prokMSA_id:084490 AY092262 clone BM152 prokMSA_id:086298 AY092263 clone BM116 prokMSA_id:085475 AY092264 clone BF83 prokMSA_id:085091 AY092265 clone BM123 prokMSA_id:083885 AY092266 clone BF6 prokMSA_id:085852 AY092267 clone BM46 prokMSA_id:083409 AY092268 clone BM70 prokMSA_id:086510 AY092269 clone BM9 prokMSA_id:084793 AY092270 clone BM13 prokMSA_id:085864 AY092271 clone BM20 prokMSA_id:014097 L34628 xylanophilum ATCC 35991 . prokMSA_id:014102 M23929 Clostridium aminovalericum ATCC 13725 . 2.30.4.2 C.PROPIONICUM_GROUP 75 seqs 2.30.4.2.1 C.PROPIONICUM_SUBGROUP 51 seqs 2.30.4.2.1.001 OTU 1 seq prokMSA_id:029123 AF427924 clone 6B 2.30.4.2.1.002 OTU 1 seq prokMSA_id:031573 AF371680 clone p-4496-6Wb3 2.30.4.2.1.003 OTU 1 seq prokMSA_id:032467 AF371679 clone p-4247-4Wa3 2.30.4.2.1.004 OTU 1 seq prokMSA_id:037128 AB062772 clone:BCf1-11 2.30.4.2.1.005 OTU 1 seq prokMSA_id:044669 AF349756 DCE25 2.30.4.2.1.006 OTU 1 seq prokMSA_id:046494 AB062805 clone:BCf10-10 2.30.4.2.1.007 OTU 1 seq prokMSA_id:049274 AY033434 Clostridium lactatifermentans 2.30.4.2.1.008 OTU 1 seq prokMSA_id:050377 AF427938 clone 6A 2.30.4.2.1.009 OTU 1 seq prokMSA_id:014106 X77841 Clostridium propionicum DSM 1682 . 2.30.4.2.1.010 OTU 1 seq prokMSA_id:014107 AF152959 str. Iso11_2. 2.30.4.2.1.011 OTU 1 seq prokMSA_id:014108 AF157052 Clostridium ASF356 str. ASF 356. 2.30.4.2.1.012 OTU 1 seq prokMSA_id:014109 X76746 Clostridium neopropionicum DSM 3847 . 2.30.4.2.1.013 OTU 1 seq prokMSA_id:077584 AB088994 clone:Rs-G77 2.30.4.2.1.014 OTU 1 seq prokMSA_id:077642 AB088995 clone:Rs-A79 2.30.4.2.1.015 OTU 1 seq prokMSA_id:077672 AB088999 clone:Rs-K05 2.30.4.2.1.016 OTU 1 seq prokMSA_id:077674 AB088973 clone:Rs-B51 2.30.4.2.1.017 OTU 1 seq prokMSA_id:077712 AB088975 clone:Rs-K59 2.30.4.2.1.018 OTU 1 seq prokMSA_id:077765 AB089000 clone:Rs-N53 2.30.4.2.1.019 OTU 1 seq prokMSA_id:077862 AB089002 clone:Rs-B14 2.30.4.2.1.020 OTU 1 seq prokMSA_id:078100 AB089001 clone:Rs-B76 2.30.4.2.1.021 OTU 1 seq prokMSA_id:078278 AB088996 clone:Rs-Q35 2.30.4.2.1.022 OTU 1 seq prokMSA_id:078321 AB088956 clone:Rs-N81 2.30.4.2.1.023 OTU 1 seq prokMSA_id:078364 AB088997 clone:Rs-K57 2.30.4.2.1.024 OTU 1 seq prokMSA_id:078382 AB088957 clone:Rs-K95 2.30.4.2.1.025 OTU 1 seq prokMSA_id:081157 AB100462 clone: Rs-100 2.30.4.2.1.026 OTU 1 seq prokMSA_id:081404 AY217424 MTCE-T2 7C 2.30.4.2.1.027 OTU 1 seq prokMSA_id:081543 AB100465 clone: Rs-L24 2.30.4.2.1.028 OTU 1 seq prokMSA_id:082089 AY217423 MTCE-T2 4C 2.30.4.2.1.029 OTU 1 seq prokMSA_id:091788 AY338357 clone BREC_11 2.30.4.2.1.030 OTU 1 seq prokMSA_id:095195 AY160776 clone COB P4-9 2.30.4.2.1.031 OTU 1 seq prokMSA_id:095414 AY160779 clone COB P1-22 2.30.4.2.1.032 OTU 1 seq prokMSA_id:096001 AY160777 clone COB P5-4 2.30.4.2.1.033 OTU 1 seq prokMSA_id:097346 AY160819 clone COB P1-25 2.30.4.2.1.034 OTU 1 seq prokMSA_id:097557 AY160775 clone COB P3-19 2.30.4.2.1.999 poor quality 17 seqs prokMSA_id:062100 AB064861 Clostridium sp. clone:NO1D1 prokMSA_id:065258 AB075680 Firmicutes str. C33 prokMSA_id:058699 AB080884 human intestinal clone:JW1F1 prokMSA_id:087500 AB099794 clone: OLDA-G4 prokMSA_id:028707 AF096597 isolate BSR22 prokMSA_id:031940 AF376352 ckncm119-C21.C8 prokMSA_id:050202 AF427928 clone 9D prokMSA_id:032033 AF427929 clone 9F prokMSA_id:038590 AF445240 Swine manure pit PPC36 prokMSA_id:036257 AJ404685 MK2-413 prokMSA_id:037177 AJ419066 clone kl155 prokMSA_id:032776 AJ419079 clone kl251 prokMSA_id:064917 AY095860 firmicute pT-128 prokMSA_id:082423 AY217400 PTCE-T2A 2C prokMSA_id:081624 AY217425 MTCE-T2 5D prokMSA_id:096655 AY239424 clone rc2-11 complete prokMSA_id:092638 AY343232 clone REC6M_95 2.30.4.2.2 C.COLINUM_SUBGROUP 19 seqs 2.30.4.2.2.001 OTU 1 seq prokMSA_id:026279 AB062841 clone:BCf8-25 2.30.4.2.2.002 OTU 1 seq prokMSA_id:042607 AB031327 Clostridium sp. NT-1 2.30.4.2.2.003 OTU 1 seq prokMSA_id:047430 U66038 Clostridium piliforme 2.30.4.2.2.004 OTU 1 seq prokMSA_id:051807 AB031328 Clostridium sp. NT-2 2.30.4.2.2.005 OTU 3 seqs prokMSA_id:014113 D14638 str. RJ. prokMSA_id:014111 D14639 str. RT. prokMSA_id:014110 S72349 Clostridium piliforme. 2.30.4.2.2.006 OTU 1 seq prokMSA_id:014114 X76748 Clostridium colinum DSM 6011 . 2.30.4.2.2.007 OTU 1 seq prokMSA_id:077909 AB088949 clone:Rs-D68 2.30.4.2.2.008 OTU 1 seq prokMSA_id:078144 AB088974 clone:Rs-K41 2.30.4.2.2.009 OTU 2 seqs prokMSA_id:091106 AY338356 clone BREC_54 prokMSA_id:092093 AY343260 clone DONOR_97 2.30.4.2.2.010 OTU 1 seq prokMSA_id:092430 AY349389 Peptococcus sp. oral clone JM048 2.30.4.2.2.011 OTU 1 seq prokMSA_id:095305 AY160778 clone COB P1-10 2.30.4.2.2.012 OTU 1 seq prokMSA_id:096781 AY160820 clone COB P1-20 2.30.4.2.2.013 OTU 1 seq prokMSA_id:098297 AY160781 clone COB P3-25 2.30.4.2.2.999 poor quality 3 seqs prokMSA_id:039190 AF376454 ckncm221-F4M.2B10 prokMSA_id:096426 AY160780 clone COB P1-26 prokMSA_id:014112 L07416 Clostridium piliforme. 2.30.4.2.3 ENVIRONMENTAL_CLONE_UN117_SUBGROUP 5 seqs 2.30.4.2.3.999 poor quality 5 seqs prokMSA_id:014116 D63595 clone UN11. prokMSA_id:014115 D63599 clone UN117. prokMSA_id:014117 D63601 clone UN15. prokMSA_id:014119 D63602 clone UN16. prokMSA_id:014118 D63628 clone UN68. 2.30.4.3 C.LENTOCELLUM_GROUP 25 seqs 2.30.4.3.001 OTU 1 seq prokMSA_id:039361 AF371938 clone p-5278-2Wa3 2.30.4.3.002 OTU 1 seq prokMSA_id:039815 AJ408067 equine intestinal sp. CL33 clone CL33 2.30.4.3.003 OTU 1 seq prokMSA_id:050432 AB054173 gram-positive HOC39 2.30.4.3.004 OTU 2 seqs prokMSA_id:014121 AF067413 Epulopiscium fishelsoni str. Red Sea A1. prokMSA_id:014120 M99572 Epulopiscium sp. str. morphotype A1. 2.30.4.3.005 OTU 1 seq prokMSA_id:014123 AB015542 str. BD2-14. 2.30.4.3.006 OTU 1 seq prokMSA_id:014125 AF087643 str. PS7. 2.30.4.3.007 OTU 1 seq prokMSA_id:014126 U22331 Metabacterium polyspora. 2.30.4.3.008 OTU 1 seq prokMSA_id:014127 U22332 Metabacterium polyspora. 2.30.4.3.009 OTU 1 seq prokMSA_id:014128 M99574 Epulopiscium sp. str. morphotype B. 2.30.4.3.010 OTU 1 seq prokMSA_id:014129 M99573 Epulopiscium sp. str. morphotype A2. 2.30.4.3.011 OTU 1 seq prokMSA_id:014130 AF067414 Epulopiscium fishelsoni str. Red Sea A2. 2.30.4.3.012 OTU 2 seqs prokMSA_id:080797 AY193169 candidate division SR1 clone SRB44 prokMSA_id:079946 AY193171 candidate division SR1 clone SRB67 2.30.4.3.013 OTU 1 seq prokMSA_id:080119 AY193173 candidate division SR1 clone SRB2 2.30.4.3.014 OTU 1 seq prokMSA_id:080638 AY193172 candidate division SR1 clone SRB29 2.30.4.3.999 poor quality 9 seqs prokMSA_id:070332 AB036507 TK24-01 prokMSA_id:068233 AF365488 clone BM89MF5BA12 prokMSA_id:041080 AF473930 firmicute 128-44 prokMSA_id:069270 AJ287681 low G+C Gram-positive 29ev prokMSA_id:034301 AY038418 clone CD5F9 prokMSA_id:022268 AY038429 firmicute clone CD5A6 prokMSA_id:089226 AY327162 clone ZB49 prokMSA_id:014122 X71851 Clostridium lentocellum DSM 5427 . prokMSA_id:014124 X76162 Clostridium lentocellum DSM 5427 . 2.30.4.4 EUBACTERIUM_GROUP 204 seqs 2.30.4.4.1 C.HALOPHILUM 19 seqs 2.30.4.4.1.001 OTU 1 seq prokMSA_id:019072 AF211297 low G+C gram positive MT35 2.30.4.4.1.002 OTU 1 seq prokMSA_id:014131 X77837 Clostridium halophilum DSM 5387 . 2.30.4.4.1.999 poor quality 17 seqs prokMSA_id:068034 AF365717 clone BT60DS1BH4 prokMSA_id:049059 AF441946 firmicute clone CD12C9 prokMSA_id:022252 AF441989 firmicute clone CD12F4 prokMSA_id:054142 AF442006 firmicute clone CD12D12 prokMSA_id:031506 AF473956 firmicute A190-2 prokMSA_id:069579 AF544850 Gram-positive clone D1C-20 prokMSA_id:069209 AF544851 Gram-positive clone D1C-25 prokMSA_id:069203 AF544856 Gram-positive clone D1C-44 prokMSA_id:055892 AF544861 Gram-positive clone D1C-63 prokMSA_id:071946 AF544888 low G+C Gram-positive clone D1-79 prokMSA_id:052318 AY038394 firmicute clone CD5C11 prokMSA_id:019281 AY038538 firmicute clone CD3H12 prokMSA_id:028854 AY038541 firmicute clone CD1D5 prokMSA_id:097015 AY211742 Gram-positive clone GoM GC019S6 prokMSA_id:095578 AY211753 delta clone GoM GC234 612S6 prokMSA_id:087994 AY261416 clone RFLP U95 prokMSA_id:086778 AY279045 clone CS059 2.30.4.4.2 AAB.HYDROGENOFORMANS_SUBGROUP 62 seqs 2.30.4.4.2.001 OTU 1 seq prokMSA_id:017311 AF371946 clone p-5389-2Wb5 2.30.4.4.2.002 OTU 1 seq prokMSA_id:072230 AF275916 AA05 2.30.4.4.2.003 OTU 1 seq prokMSA_id:023874 AF158716 A32 small subunit 2.30.4.4.2.004 OTU 1 seq prokMSA_id:025067 AF195449 low-GC gram+ kpa86rc 2.30.4.4.2.005 OTU 1 seq prokMSA_id:056091 AB069798 clone:CS5.21 2.30.4.4.2.006 OTU 1 seq prokMSA_id:027616 AF275922 AA33 2.30.4.4.2.007 OTU 1 seq prokMSA_id:034789 AF371833 clone p-2801-24E5 2.30.4.4.2.008 OTU 1 seq prokMSA_id:036762 AF158717 PM33 small subunit 2.30.4.4.2.009 OTU 1 seq prokMSA_id:037414 AF158712 PM3 small subunit 2.30.4.4.2.010 OTU 1 seq prokMSA_id:040581 AF424417 low G+C Gram-positive MERTZ_21CM_237 2.30.4.4.2.011 OTU 1 seq prokMSA_id:041943 AF424414 low G+C Gram-positive MERTZ_0CM_115 2.30.4.4.2.012 OTU 1 seq prokMSA_id:041951 AF255644 clone Ebpr14 2.30.4.4.2.013 OTU 1 seq prokMSA_id:055824 AF523322 clone P4-52 2.30.4.4.2.014 OTU 1 seq prokMSA_id:050268 AF371945 clone p-5324-2Wa3 2.30.4.4.2.015 OTU 1 seq prokMSA_id:059830 AY133358 clone OB3_52 2.30.4.4.2.016 OTU 2 seqs prokMSA_id:014137 AB013836 str. 48.h. prokMSA_id:063576 AB069794 clone:CS5.11 2.30.4.4.2.017 OTU 1 seq prokMSA_id:066940 AJ306754 clone SHA-58 2.30.4.4.2.018 OTU 1 seq prokMSA_id:014132 AF016691 Acidaminobacter hydrogenoformans str. glu 65 DSM 2784 . 2.30.4.4.2.019 OTU 1 seq prokMSA_id:014133 U81761 clone vadinBB35. 2.30.4.4.2.020 OTU 1 seq prokMSA_id:014134 AF129866 clone CA19. 2.30.4.4.2.021 OTU 1 seq prokMSA_id:014135 AF050099 Fusibacter paucivorans SEBR 4211. 2.30.4.4.2.022 OTU 1 seq prokMSA_id:014136 AB015534 str. BD2-4. 2.30.4.4.2.023 OTU 1 seq prokMSA_id:074243 AF317379 feedlot manure B6 2.30.4.4.2.024 OTU 1 seq prokMSA_id:077890 AB088971 clone:Rs-N71 2.30.4.4.2.025 OTU 1 seq prokMSA_id:077959 AB089010 Clostridiaceae clone:Rs-F76 2.30.4.4.2.026 OTU 1 seq prokMSA_id:077964 AB089009 Clostridiaceae clone:Rs-E70 2.30.4.4.2.027 OTU 1 seq prokMSA_id:083754 AY197417 clone B04R016 2.30.4.4.2.028 OTU 1 seq prokMSA_id:085424 AF491333 Fusibacter sp. SA1 2.30.4.4.2.029 OTU 1 seq prokMSA_id:095868 AY160828 clone COB P5-13 2.30.4.4.2.999 poor quality 32 seqs prokMSA_id:017738 AB029415 24-45:3 prokMSA_id:068639 AB081818 seuence clone:B-01 prokMSA_id:037906 AF321211 delta wpd_25 prokMSA_id:041003 AF353267 compost clone SSCP10d5-7 prokMSA_id:068098 AF365639 clone BM89DS1BbB9 prokMSA_id:082071 AF466708 Clostridiaceae clone DBS6A prokMSA_id:046132 AF473937 firmicute 128-60 prokMSA_id:056223 AF544854 Gram-positive clone D1C-39 prokMSA_id:070099 AF544858 Gram-positive clone D1C-47 prokMSA_id:073667 AF544873 Gram-positive clone D1-9 prokMSA_id:048045 AJ011666 DGGE amplificate BS2.2 prokMSA_id:029120 AJ278522 beta clone 4-4 prokMSA_id:019044 AJ287713 low G+C Gram-positive 355ev prokMSA_id:024540 AJ418974 clone k057 prokMSA_id:078197 AJ535259 low G+C Gram-positive clone Hyd24-33 prokMSA_id:051954 AY038389 firmicute clone CD3D11 prokMSA_id:030191 AY038403 firmicute clone CD5D10 prokMSA_id:019402 AY038404 firmicute clone CD5F7 prokMSA_id:036240 AY038542 clone CD4D1 prokMSA_id:085649 AY092237 clone BM98 prokMSA_id:086355 AY092238 clone BM103 prokMSA_id:084006 AY092239 clone BM165 prokMSA_id:098873 AY211733 Gram-positive clone GoM GC185 538S5 prokMSA_id:085432 AY226267 clone BBBB-80 prokMSA_id:090041 AY245476 low G+C Gram-positive ML21_DSV12 prokMSA_id:088591 AY245478 low G+C Gram-positive ML23_DSV2 prokMSA_id:090027 AY245479 ML17_DSV3 prokMSA_id:088049 AY261396 clone RFLP U10 prokMSA_id:086978 AY279056 clone CS018 prokMSA_id:087375 AY281347 Clostridium sp. ANP2 prokMSA_id:088210 AY323195 Gram-positive clone A134-2 prokMSA_id:090098 AY327214 clone ZB131 2.30.4.4.3 ENVIRONMENTAL_UN_CLONES 7 seqs 2.30.4.4.3.999 poor quality 7 seqs prokMSA_id:014144 D63591 clone UN105. prokMSA_id:014143 D63603 clone UN17. prokMSA_id:014142 D63607 clone UN24. prokMSA_id:014141 D63614 clone UN38. prokMSA_id:014140 D63617 clone UN43. prokMSA_id:014138 D63620 clone UN48. prokMSA_id:014139 D63635 clone UN82. 2.30.4.4.4 C.AMINOBUTYRICUM_SUBGROUP 43 seqs 2.30.4.4.4.001 OTU 1 seq prokMSA_id:059564 AY134903 sp. oral clone FX028 2.30.4.4.4.002 OTU 1 seq prokMSA_id:059531 AF538855 oral clone P2PC_29 P2 2.30.4.4.4.003 OTU 1 seq prokMSA_id:020310 AF371685 clone p-4199-6Wa5 2.30.4.4.4.004 OTU 1 seq prokMSA_id:022544 AJ408208 equine intestinal sp. MW21 clone MW21 2.30.4.4.4.005 OTU 1 seq prokMSA_id:024052 AF376365 ckncm132-F1M.2B6 2.30.4.4.4.006 OTU 1 seq prokMSA_id:033133 AF371683 clone p-3212-42A2 2.30.4.4.4.007 OTU 1 seq prokMSA_id:041514 AB062845 clone:BCf9-13 2.30.4.4.4.008 OTU 1 seq prokMSA_id:041744 AF447137 clone TDC-S5:80 2.30.4.4.4.009 OTU 1 seq prokMSA_id:042984 AF395430 Eub No. 20 2.30.4.4.4.010 OTU 1 seq prokMSA_id:051211 AB062842 clone:BCf9-05 2.30.4.4.4.011 OTU 1 seq prokMSA_id:066192 AJ488072 clone IA-19 2.30.4.4.4.012 OTU 1 seq prokMSA_id:066939 AJ306755 clone SHA-74 2.30.4.4.4.013 OTU 2 seqs prokMSA_id:068350 AF481212 oral clone MCE10_174 E2 prokMSA_id:014147 AJ012604 PUS9.170. 2.30.4.4.4.014 OTU 1 seq prokMSA_id:014145 X76161 Clostridium aminobutyricum DSM 2634. 2.30.4.4.4.015 OTU 1 seq prokMSA_id:014148 AJ241007 clone Sva1064. 2.30.4.4.4.016 OTU 1 seq prokMSA_id:077744 AB088961 clone:Rs-B74 2.30.4.4.4.017 OTU 1 seq prokMSA_id:077824 AB088948 clone:Rs-M09 2.30.4.4.4.018 OTU 1 seq prokMSA_id:077831 AB088970 clone:Rs-Q64 2.30.4.4.4.019 OTU 1 seq prokMSA_id:077885 AB088954 clone:Rs-N27 2.30.4.4.4.020 OTU 1 seq prokMSA_id:078018 AB088986 clone:Rs-F43 2.30.4.4.4.021 OTU 1 seq prokMSA_id:078236 AB088987 clone:Rs-E61 2.30.4.4.4.022 OTU 1 seq prokMSA_id:078301 AB088960 clone:Rs-N82 2.30.4.4.4.023 OTU 1 seq prokMSA_id:082172 AB100461 clone: Rs-050 2.30.4.4.4.024 OTU 1 seq prokMSA_id:092043 AY349378 sp. oral clone JS001 2.30.4.4.4.025 OTU 1 seq prokMSA_id:093469 AB118593 TC8 2.30.4.4.4.026 OTU 1 seq prokMSA_id:094658 AY368599 clone nc-11a 2.30.4.4.4.027 OTU 1 seq prokMSA_id:095791 AY160815 clone COB P4-25 2.30.4.4.4.028 OTU 1 seq prokMSA_id:095905 AJ536839 clone 263 2.30.4.4.4.029 OTU 1 seq prokMSA_id:098253 AJ536837 clone 215 2.30.4.4.4.999 poor quality 13 seqs prokMSA_id:052461 AB028387 oral AP60-30 prokMSA_id:021564 AF296228 SE-23 prokMSA_id:021591 AF320300 SAB reactor band 5 prokMSA_id:025574 AF376383 ckncm150-F1M.2G2 prokMSA_id:029576 AF441943 firmicute clone CD12C11 prokMSA_id:026405 AF473951 firmicute A190-12 prokMSA_id:070244 AF544859 Gram-positive clone D1C-56 prokMSA_id:083721 AY092320 clone BM66 prokMSA_id:097592 AY160816 clone COB P4-22 prokMSA_id:097639 AY239431 clone rc5-14 complete prokMSA_id:039126 U81679 clone vadinBC14 prokMSA_id:014146 Z77462 str. 1-700 C4. prokMSA_id:043970 Z96940 strain MR61B 2.30.4.4.5 EUB.SAPHENUM 2 seqs 2.30.4.4.5.001 OTU 1 seq prokMSA_id:014149 U65987 saphenum ATCC 49989 . 2.30.4.4.5.999 poor quality 1 seq prokMSA_id:058701 AB080882 human intestinal clone:JW1D7 2.30.4.4.6 EUB.NODATUM_SUBGROUP 20 seqs 2.30.4.4.6.001 OTU 1 seq prokMSA_id:059533 AF538856 oral clone P2PB_46 P3 2.30.4.4.6.003 OTU 1 seq prokMSA_id:037961 AB034015 rumen 3C0d-17 2.30.4.4.6.005 OTU 4 seqs prokMSA_id:043800 AB034092 rumen 3C3d-6 prokMSA_id:039613 AB034093 rumen 4C3d-12 prokMSA_id:023113 AB034148 rumen 3C28d-4 prokMSA_id:050860 AJ310135 pyruvivorans 2.30.4.4.6.006 OTU 1 seq prokMSA_id:041364 AB062827 clone:BCf5-15 2.30.4.4.6.007 OTU 5 seqs prokMSA_id:014153 AB020885 minutum ATCC 700079 . prokMSA_id:014151 AJ005636 minutum ATCC 700079 . prokMSA_id:014154 U13037 tardum str. SC 87K. prokMSA_id:072513 U13037 tardum SC 87K subunit prokMSA_id:014150 Z36275 tardum str. SC 87K. 2.30.4.4.6.008 OTU 1 seq prokMSA_id:014152 AF044945 C2 str. C2. 2.30.4.4.6.009 OTU 2 seqs prokMSA_id:014155 U13041 nodatum str. AK-5 ATCC 33099 . prokMSA_id:014156 Z36274 nodatum str. AK-5 ATCC 33099 . 2.30.4.4.6.010 OTU 1 seq prokMSA_id:088694 AB113687 clone:AAB52 2.30.4.4.6.011 OTU 1 seq prokMSA_id:092840 AY349375 sp. oral clone HU029 2.30.4.4.6.999 poor quality 3 seqs prokMSA_id:020427 AF072859 albensis prokMSA_id:024160 AF261817 manure pit P69 prokMSA_id:032379 AY006513 rumen 2.30.4.4.7 EUB.BRACHY_SUBGROUP 51 seqs 2.30.4.4.7.001 OTU 1 seq prokMSA_id:016550 AB034147 rumen 4C28d-20 2.30.4.4.7.002 OTU 3 seqs prokMSA_id:017051 AB034004 rumen 3C0d-4 prokMSA_id:014165 AF001766 clone RF35. prokMSA_id:088456 AY315206 rumen clone JRCG19 2.30.4.4.7.003 OTU 1 seq prokMSA_id:018066 AB034010 rumen 3C0d-10 2.30.4.4.7.004 OTU 1 seq prokMSA_id:059565 AY134904 sp. oral clone FX033 2.30.4.4.7.005 OTU 4 seqs prokMSA_id:014164 AB021701 Mogibacterium pumilum str. D2-18. prokMSA_id:014167 AB021702 Mogibacterium vescum str. D5-2. prokMSA_id:018995 AB037874 Mogibacterium diversum prokMSA_id:046159 AB037875 Mogibacterium neglectum 2.30.4.4.7.006 OTU 1 seq prokMSA_id:021556 AF376442 ckncm209-F4M.1F3 2.30.4.4.7.007 OTU 1 seq prokMSA_id:028272 AB034007 rumen 3C0d-7 2.30.4.4.7.008 OTU 2 seqs prokMSA_id:028381 AF371687 clone p-1032-a5 prokMSA_id:076547 AY167964 Swine manure 37-2 2.30.4.4.7.009 OTU 3 seqs prokMSA_id:034881 AF287761 sp. oral strain A35MT prokMSA_id:014160 AJ006963 Fusobacterium sulci ATCC 35585 . prokMSA_id:071791 U13039 infirmum W 1471 subunit 2.30.4.4.7.010 OTU 1 seq prokMSA_id:036226 AF371681 clone p-3263-42A2 2.30.4.4.7.011 OTU 1 seq prokMSA_id:036792 AF371686 clone p-83-a5 2.30.4.4.7.012 OTU 1 seq prokMSA_id:043267 AF371688 clone p-648-a5 2.30.4.4.7.013 OTU 1 seq prokMSA_id:043339 AF287762 sp. oral clone CK047 2.30.4.4.7.014 OTU 1 seq prokMSA_id:044410 AB034014 rumen 3C0d-16 2.30.4.4.7.015 OTU 1 seq prokMSA_id:044950 AB034041 rumen 5C0d-8 2.30.4.4.7.016 OTU 1 seq prokMSA_id:045635 AB045745 fiber-attaching rumen SY12 2.30.4.4.7.017 OTU 1 seq prokMSA_id:046317 AJ408066 equine intestinal sp. CL32 clone CL32 2.30.4.4.7.018 OTU 1 seq prokMSA_id:052379 AJ251215 Anaerovorax odorimutans strain NorPut 2.30.4.4.7.019 OTU 2 seqs prokMSA_id:014158 U13038 brachy str. BR-179 ATCC 33089 . prokMSA_id:014157 Z36272 brachy str. BR-179 ATCC 33089 . 2.30.4.4.7.020 OTU 2 seqs prokMSA_id:014162 U13039 infirmum str. W 1471; clone 1471-3. prokMSA_id:014159 Z36273 infirmum str. W 1471; clone 1471-3. 2.30.4.4.7.021 OTU 1 seq prokMSA_id:014161 AF001753 clone RF21. 2.30.4.4.7.022 OTU 2 seqs prokMSA_id:014166 U13042 timidum. prokMSA_id:014163 Z36296 timidum. 2.30.4.4.7.023 OTU 1 seq prokMSA_id:078354 AB088955 clone:Rs-M13 2.30.4.4.7.024 OTU 1 seq prokMSA_id:092717 AY349373 sp. oral clone JH012 2.30.4.4.7.999 poor quality 16 seqs prokMSA_id:037278 AB028373 oral AP60-14 prokMSA_id:029973 AB028406 oral AP60-54 prokMSA_id:035585 AB034036 rumen 5C0d-2 prokMSA_id:043472 AB034037 rumen 5C0d-3 prokMSA_id:055780 AB064863 firmicute clone:NO2-69 prokMSA_id:058700 AB080883 human intestinal clone:JW1G2 prokMSA_id:034612 AF293914 rumen clone 12 prokMSA_id:035232 AF293919 rumen clone 17 prokMSA_id:018185 AF376363 ckncm130-F1M.1A6 prokMSA_id:028611 AJ241752 Streptococcus intestinalis clone Col114 prokMSA_id:070806 AJ249972 symbiont of Hodotermes mossambicus Hm9 clone Hm9 prokMSA_id:097118 AJ555136 brachy prokMSA_id:039525 AY006542 rumen prokMSA_id:047804 AY006562 rumen prokMSA_id:021166 U81705 clone vadinCA16 prokMSA_id:043360 Z77589 1-700 C4 2.30.4.5 C.LITUSEBURENSE_GROUP 286 seqs 2.30.4.5.1 C.FORMICOACETICUM_SUBGROUP 37 seqs 2.30.4.5.1.001 OTU 1 seq prokMSA_id:019154 AJ271453 Clostridium elmenteitii isolate E2SE1-B 2.30.4.5.1.002 OTU 1 seq prokMSA_id:025925 AB037677 Alkalliphilus auruminator 2.30.4.5.1.003 OTU 4 seqs prokMSA_id:028874 AF373919 Tindallia sp. APO prokMSA_id:040951 AJ271455 Clostridium aminovorans isolate B7FT-A prokMSA_id:051262 AJ271457 Clostridium bogorii isolate B8NS1-C prokMSA_id:014174 Y15626 Tindallia magadii str. Z-7934T DSM 10318. 2.30.4.5.1.004 OTU 1 seq prokMSA_id:058790 AY137848 Alkaliphils metalliredigenes small subunit 2.30.4.5.1.005 OTU 1 seq prokMSA_id:031552 AF349758 TCE8 2.30.4.5.1.006 OTU 1 seq prokMSA_id:055916 AF523884 clone RCP2-16 2.30.4.5.1.007 OTU 1 seq prokMSA_id:040259 Y18183 Clostridium aceticum strain DSM 1496 2.30.4.5.1.008 OTU 1 seq prokMSA_id:042001 AJ431342 firmicute isolate ikaite un-c24 2.30.4.5.1.009 OTU 1 seq prokMSA_id:043181 Y16716 Natronoincola histidinovorans 2.30.4.5.1.010 OTU 1 seq prokMSA_id:045283 AF467248 Alkaliphilus crotonoxidans 2.30.4.5.1.011 OTU 3 seqs prokMSA_id:051694 AJ320233 Caminibacillus sporogenes strain AM1114 prokMSA_id:079538 AJ431241 Clostridium sp. Dex60-28 strain Dex60-28 prokMSA_id:079586 AJ431242 Clostridium sp. Dex60-4 strain Dex60-4 2.30.4.5.1.012 OTU 1 seq prokMSA_id:060603 AF407695 clone R82 2.30.4.5.1.013 OTU 1 seq prokMSA_id:060608 AF407690 clone R35 2.30.4.5.1.014 OTU 1 seq prokMSA_id:062667 AF507894 low G+C Gram-positive clone ML623J-36 2.30.4.5.1.015 OTU 1 seq prokMSA_id:067640 AF458779 Clostridium subatlanticum 2.30.4.5.1.016 OTU 1 seq prokMSA_id:014168 X77836 Clostridium formicoaceticum DSM 92 . 2.30.4.5.1.017 OTU 1 seq prokMSA_id:014169 X77851 Clostridium felsineum DSM 794 . 2.30.4.5.1.018 OTU 1 seq prokMSA_id:014170 AF142918 clone PENDANT-5. 2.30.4.5.1.019 OTU 1 seq prokMSA_id:014171 AF142887 clone EKHO-3. 2.30.4.5.1.020 OTU 1 seq prokMSA_id:014172 AF142792 clone ACE-14. 2.30.4.5.1.021 OTU 1 seq prokMSA_id:014173 AF142789 clone ACE-8. 2.30.4.5.1.022 OTU 1 seq prokMSA_id:071603 AJ271456 Clostridium alcaliphilum isolate B8NS1-A 2.30.4.5.1.023 OTU 1 seq prokMSA_id:079318 AJ431244 Clostridium sp. Dex60-75 strain Dex60-75 2.30.4.5.1.024 OTU 1 seq prokMSA_id:085846 AY272039 Friburgia bovis strain OMZ913 2.30.4.5.1.025 OTU 1 seq prokMSA_id:089166 AF522323 Anoxynatronum sibiricum 2.30.4.5.1.999 poor quality 7 seqs prokMSA_id:040995 AF459050 E5-46-SC1-122 prokMSA_id:072205 AJ271454 Clostridium alcalibutyricum isolate E2SE1-C prokMSA_id:057408 AJ517868 clone B34.6 prokMSA_id:057405 AJ517874 clone M69.1 prokMSA_id:057403 AJ517875 clone N1.1 prokMSA_id:083245 AY092248 clone BF23 prokMSA_id:096695 AY211746 Gram-positive clone GoM GC234 058S5 2.30.4.5.2 C.STICKLANDII_SUBGROUP 32 seqs 2.30.4.5.2.001 OTU 2 seqs prokMSA_id:019395 AF058004 RFLP15 prokMSA_id:014180 X77845 Clostridium litorale DSM 5388 . 2.30.4.5.2.002 OTU 1 seq prokMSA_id:021233 AF287765 sp. oral strain A03MT 2.30.4.5.2.003 OTU 1 seq prokMSA_id:033619 AJ252596 Rhizosphere soil isolate RSI-29 2.30.4.5.2.004 OTU 2 seqs prokMSA_id:073998 AF287764 sp. oral clone BB142 prokMSA_id:086132 AY207060 P4P_50 P4 2.30.4.5.2.005 OTU 1 seq prokMSA_id:049266 AJ307951 mRNA clone sipK7 2.30.4.5.2.006 OTU 1 seq prokMSA_id:051973 AF450134 Frigovirgula patagoniensis 2.30.4.5.2.007 OTU 2 seqs prokMSA_id:060259 AF537211 Filifactor villosus strain DSM1645 prokMSA_id:014177 X73452 Filifactor villosus ATCC 33388 . 2.30.4.5.2.008 OTU 1 seq prokMSA_id:060617 AF407679 clone Y36 2.30.4.5.2.009 OTU 2 seqs prokMSA_id:066195 AJ488068 clone IA-11 prokMSA_id:014175 M26494 Clostridium sticklandii str. HF ATCC 12662 . 2.30.4.5.2.010 OTU 1 seq prokMSA_id:014178 AJ006962 Fusobacterium alocis ATCC 35896 . 2.30.4.5.2.011 OTU 1 seq prokMSA_id:014181 U81670 clone vadinBB60. 2.30.4.5.2.012 OTU 1 seq prokMSA_id:014182 AF071416 acidaminophilum str. a1-2 DSM 3953 . 2.30.4.5.2.999 poor quality 16 seqs prokMSA_id:050639 AB028365 oral AP60-5 prokMSA_id:051155 AF234746 sludge A28 prokMSA_id:045076 AF295114 marine anaerobic 90dCC18 prokMSA_id:068102 AF365634 clone BM89DS1BbA8 prokMSA_id:076890 AF432828 clone N44.44PG prokMSA_id:048364 AF473969 firmicute 34-36 prokMSA_id:072472 AF544899 Gram-positive clone A191-10 prokMSA_id:055553 AF544904 Gram-positive clone A191-15 prokMSA_id:070941 AF544931 Gram-positive clone 1-7-3 prokMSA_id:018400 AJ421820 clone CFA-6MS-5 prokMSA_id:039306 AJ428517 isolate B1 prokMSA_id:082381 AY187394 clone SA3 prokMSA_id:087459 AY261401 clone RFLP U27 prokMSA_id:089992 AY323196 Gram-positive clone A134-9 prokMSA_id:014176 L04167 Clostridium sticklandii str. SR VPI 14603. prokMSA_id:014179 L34629 yurii subsp. yurii ATCC 43713. 2.30.4.5.3 C.PARADOXUM_SUBGROUP 22 seqs 2.30.4.5.3.001 OTU 1 seq prokMSA_id:062675 AF507887 low G+C Gram-positive clone ML635J-4 2.30.4.5.3.002 OTU 1 seq prokMSA_id:014184 Z69942 Clostridium paradoxum str. JW-YL-7 DSM 7308 . 2.30.4.5.3.004 OTU 2 seqs prokMSA_id:014188 Z69940 Clostridium paradoxum str. JW-YL-7 DSM 7308 . prokMSA_id:014187 Z69941 Clostridium paradoxum str. JW-YL-7 DSM 7308 . 2.30.4.5.3.006 OTU 13 seqs prokMSA_id:014185 Z69927 Clostridium paradoxum str. JW-YL-7 DSM 7308 . prokMSA_id:014186 Z69928 Clostridium paradoxum str. JW-YL-7 DSM 7308 . prokMSA_id:014189 Z69929 Clostridium paradoxum str. JW-YL-7 DSM 7308 . prokMSA_id:014190 Z69930 Clostridium paradoxum str. JW-YL-7 DSM 7308 . prokMSA_id:014191 Z69931 Clostridium paradoxum str. JW-YL-7 DSM 7308 . prokMSA_id:014193 Z69932 Clostridium paradoxum str. JW-YL-7 DSM 7308 . prokMSA_id:014196 Z69933 Clostridium paradoxum str. JW-YL-7 DSM 7308 . prokMSA_id:014198 Z69934 Clostridium paradoxum str. JW-YL-7 DSM 7308 . prokMSA_id:014192 Z69935 Clostridium paradoxum str. JW-YL-7 DSM 7308 . prokMSA_id:014194 Z69936 Clostridium paradoxum str. JW-YL-7 DSM 7308 . prokMSA_id:014195 Z69937 Clostridium paradoxum str. JW-YL-7 DSM 7308 . prokMSA_id:014197 Z69938 Clostridium paradoxum str. JW-YL-7 DSM 7308 . prokMSA_id:014199 Z69939 Clostridium paradoxum str. JW-YL-7 DSM 7308 . 2.30.4.5.3.007 OTU 1 seq prokMSA_id:076251 AY158079 Tepidibacter thalassicus 2.30.4.5.3.008 OTU 1 seq prokMSA_id:083820 AY245527 Tepidibacter formicigenes 2.30.4.5.3.999 poor quality 3 seqs prokMSA_id:084063 AY092249 clone BM135 prokMSA_id:014183 L06838 Clostridium paradoxum str. JW-YL-7. prokMSA_id:014200 L11304 Clostridium thermoalcaliphilum str. JW/YL-23-2 DSM 7309 . 2.30.4.5.4 EUB.TENUE_SUBGROUP 77 seqs 2.30.4.5.4.001 OTU 1 seq prokMSA_id:016488 AJ318135 clone BIgi14 2.30.4.5.4.002 OTU 2 seqs prokMSA_id:016614 AF385568 TM7 phylum sp. oral clone BU080 prokMSA_id:081990 AY144354 candidate division TM7 clone SBG2 2.30.4.5.4.003 OTU 1 seq prokMSA_id:017873 AF445701 candidate division TM7 clone SM1G12 2.30.4.5.4.004 OTU 1 seq prokMSA_id:021239 AY005448 sp. oral clone BS003 2.30.4.5.4.005 OTU 2 seqs prokMSA_id:033869 AF269014 NoosaAW21 prokMSA_id:022919 AF269027 NoosaAW40 2.30.4.5.4.006 OTU 2 seqs prokMSA_id:022963 AF268998 SBR2096 prokMSA_id:023550 AF269011 NoosaAW07 2.30.4.5.4.007 OTU 1 seq prokMSA_id:024810 AF018045 O8SD 2.30.4.5.4.008 OTU 1 seq prokMSA_id:026128 AJ318136 clone BIgi18 2.30.4.5.4.009 OTU 2 seqs prokMSA_id:029561 AB023971 Clostridium hiranonis strain:HD-17 prokMSA_id:044695 AF262237 Clostridium sp. TO-931 2.30.4.5.4.010 OTU 1 seq prokMSA_id:031451 AF018037 O815 2.30.4.5.4.011 OTU 2 seqs prokMSA_id:033116 AF224674 Clostridium sp. FL3 prokMSA_id:039630 AF224675 Clostridium sp. FL4 2.30.4.5.4.012 OTU 1 seq prokMSA_id:034534 AF269025 NoosaAW91 2.30.4.5.4.013 OTU 1 seq prokMSA_id:037542 AF191226 Clostridium sp. 4 2.30.4.5.4.014 OTU 1 seq prokMSA_id:037628 AF269009 TM7LH21 2.30.4.5.4.015 OTU 1 seq prokMSA_id:039443 AF385506 TM7 phylum sp. oral clone CW040 2.30.4.5.4.016 OTU 1 seq prokMSA_id:042137 AF269022 NoosaAW89 2.30.4.5.4.017 OTU 1 seq prokMSA_id:045149 AF268999 SBR2060 2.30.4.5.4.018 OTU 2 seqs prokMSA_id:046716 AB075771 Clostridium sordellii prokMSA_id:014202 X73451 Clostridium ghoni NCIMB 10636 . 2.30.4.5.4.019 OTU 3 seqs prokMSA_id:065418 AF513103 clone 734 prokMSA_id:072510 AF513104 clone 75 prokMSA_id:065413 AF513108 clone 8A 2.30.4.5.4.020 OTU 1 seq prokMSA_id:065419 AF513102 clone 71 2.30.4.5.4.021 OTU 1 seq prokMSA_id:065428 AF513093 clone 22 2.30.4.5.4.022 OTU 1 seq prokMSA_id:065697 AF507686 soil clone C026 2.30.4.5.4.023 OTU 1 seq prokMSA_id:014201 M59118 tenue ATCC 25553 . 2.30.4.5.4.024 OTU 2 seqs prokMSA_id:014203 AF125204 clone AH040. prokMSA_id:081787 AY144358 candidate division TM7 clone SBG6 2.30.4.5.4.025 OTU 1 seq prokMSA_id:070379 AF385520 TM7 phylum sp. oral clone DR034 2.30.4.5.4.026 OTU 1 seq prokMSA_id:074315 AF018039 O8SA 2.30.4.5.4.027 OTU 3 seqs prokMSA_id:078118 AB074645 clone:APe4_11 prokMSA_id:077629 AB074646 clone:APe2_24 prokMSA_id:078146 AB074647 clone:APe2_91 2.30.4.5.4.028 OTU 1 seq prokMSA_id:081216 AB100499 candidate division TM7 clone: Rs-045 2.30.4.5.4.029 OTU 1 seq prokMSA_id:081926 AY144355 candidate division TM7 clone SBG3 2.30.4.5.4.030 OTU 1 seq prokMSA_id:086240 AY231316 clone ER1_16 2.30.4.5.4.031 OTU 1 seq prokMSA_id:093147 AY349415 TM7 phylum sp. oral clone HD027 2.30.4.5.4.032 OTU 1 seq prokMSA_id:095008 AJ583163 clone S15B-MN121 2.30.4.5.4.033 OTU 1 seq prokMSA_id:095632 AJ538354 clone 220 2.30.4.5.4.034 OTU 1 seq prokMSA_id:098073 AJ538353 clone 54 2.30.4.5.4.999 poor quality 32 seqs prokMSA_id:020251 AB011313 clone: MUG21 prokMSA_id:043387 AB028413 oral RP55-4 prokMSA_id:014204 AF030773 clone Adriatic87. prokMSA_id:031860 AF104297 186 prokMSA_id:023169 AF104298 187 prokMSA_id:049911 AF109142 freshwater LCK-60 prokMSA_id:044496 AF128717 soil C026 prokMSA_id:022122 AF128730 soil C062 prokMSA_id:017394 AF175579 WJGRT-1 prokMSA_id:048282 AF175582 WJGRT-4 prokMSA_id:040520 AF175586 WJGRT-8 prokMSA_id:051562 AF175590 WJGRT-17 prokMSA_id:017337 AF191230 Clostridium sp. 19 prokMSA_id:020363 AF191239 Clostridium sp. 36 prokMSA_id:042913 AF432326 4%N-0d-90 prokMSA_id:076754 AF432753 clone S36.48SM prokMSA_id:067666 AF485397 clone G10 prokMSA_id:067283 AF495406 clone F10.48 prokMSA_id:069424 AF544876 Gram-positive clone D1-17 prokMSA_id:020290 AJ232785 clone TRS16 prokMSA_id:029669 AJ232811 clone TRE14 prokMSA_id:016974 AJ419060 clone kl144 prokMSA_id:035203 AY013658 Banisveld landfill BVB43b prokMSA_id:029173 AY013661 Banisveld landfill BVB94b prokMSA_id:029304 AY037717 earthworm cast clone C068 prokMSA_id:046594 AY038419 clone CD5E4 prokMSA_id:039118 AY048193 clone PR-VFA-22 prokMSA_id:056158 AY154389 epsilon LTUE00114 prokMSA_id:057718 AY154390 epsilon LTUE03014 prokMSA_id:057717 AY154391 epsilon LTUE03114 prokMSA_id:079438 AY187884 clone CC9 prokMSA_id:014205 M59105 Clostridium sordellii ATCC 9714 . 2.30.4.5.5 C.BIFERMENTANS_SUBGROUP 25 seqs 2.30.4.5.5.001 OTU 9 seqs prokMSA_id:070590 AB075769 Clostridium paraputrificum prokMSA_id:036106 AF150692 Elbe River snow isolate Iso11_3 prokMSA_id:072328 AF224673 Clostridium sp. FL2 prokMSA_id:051941 AF320283 Clostridium bifermentans prokMSA_id:076631 AY167932 Swine manure RT-1A prokMSA_id:075054 AY167941 Swine manure RT-4B prokMSA_id:076955 AY167944 Swine manure RT-5A prokMSA_id:014207 X73437 Clostridium bifermentans NCIMB 10716 . prokMSA_id:029530 X75906 C.bifermentans 2.30.4.5.5.002 OTU 1 seq prokMSA_id:029925 AY038514 firmicute clone CD4C3 2.30.4.5.5.003 OTU 1 seq prokMSA_id:047750 AF191247 Clostridium sp. 50 2.30.4.5.5.004 OTU 1 seq prokMSA_id:014208 Z94008 clone T37. 2.30.4.5.5.005 OTU 1 seq prokMSA_id:014209 Y18787 Clostridium bifermentans str. DPH-1. 2.30.4.5.5.999 poor quality 12 seqs prokMSA_id:062093 AB064872 Clostridium sp. clone:NB4D7 prokMSA_id:045578 AF070466 Mixed culture ruminal PAD27 prokMSA_id:036449 AF191238 Clostridium sp. 32 prokMSA_id:022208 AF261788 swine feces F17 prokMSA_id:085323 AF499843 clone LCLC21 prokMSA_id:084509 AF499857 clone LCRC11 prokMSA_id:085165 AF499876 clone LCTI4 prokMSA_id:056044 AF540817 clone DP10-16 prokMSA_id:059447 AF540818 clone dp11-13 prokMSA_id:033501 U65715 Mastodon intestinal AN-17-3 prokMSA_id:014206 X89360 clone PAN031. prokMSA_id:014210 X89361 AEspoe hard rock 10-626m below ground surface clone AAN036. 2.30.4.5.6 C.LITUSEBURENSE 27 seqs 2.30.4.5.6.001 OTU 1 seq prokMSA_id:019162 AJ229220 from anoxic bulk soil clone BSV76 2.30.4.5.6.002 OTU 1 seq prokMSA_id:019559 AF193565 Clostridium a11r 2.30.4.5.6.003 OTU 1 seq prokMSA_id:022418 AF191245 Clostridium sp. 48 2.30.4.5.6.004 OTU 1 seq prokMSA_id:014211 M59107 Clostridium lituseburense ATCC 25759 . 2.30.4.5.6.005 OTU 5 seqs prokMSA_id:070837 AF371691 clone p-478-o2 prokMSA_id:070793 AJ306761 clone SHA-123 prokMSA_id:096258 AY239427 clone rc3-1 complete prokMSA_id:092671 AY343261 clone DONOR_20 prokMSA_id:092055 AY343299 clone DONOR_4 2.30.4.5.6.006 OTU 1 seq prokMSA_id:074100 AF018038 O8SE 2.30.4.5.6.999 poor quality 17 seqs prokMSA_id:056523 AB064876 firmicute clone:NS1E9 prokMSA_id:056289 AB075658 chicken cecal clone:2B12 prokMSA_id:087418 AB099796 clone: OLDB-G12 prokMSA_id:023334 AF191229 Clostridium sp. 17 prokMSA_id:028740 AF191233 Clostridium sp. 23 prokMSA_id:036050 AF191243 Clostridium sp. 46 prokMSA_id:017083 AF191244 Clostridium sp. 47 prokMSA_id:052186 AF193562 Clostridium lituseburense prokMSA_id:026703 AF193564 Clostridium a10r prokMSA_id:025716 AF193566 Clostridium a12r prokMSA_id:034140 AF376154 ckncm250-m8d8 prokMSA_id:018415 AF388344 clone Aclay31 prokMSA_id:022606 AJ241731 microorganism clone Cow49 prokMSA_id:029706 AJ241783 Clostridium lituseburense clone Cow44 prokMSA_id:020314 AJ247105 Riz76 prokMSA_id:059305 AY122352 Clostridium sp. clone I-16 prokMSA_id:044523 U35520 194R6 from Wisconsin agricultural soil 2.30.4.5.7 C.GLYCOLICUM_SUBGROUP 27 seqs 2.30.4.5.7.001 OTU 12 seqs prokMSA_id:025701 AF150690 Elbe River snow isolate Iso11_1 prokMSA_id:018262 AF371689 clone p-248-o5 prokMSA_id:046339 AF371690 clone p-55-a5 prokMSA_id:061055 AF530341 clone cadhufec17d10sav prokMSA_id:052802 AJ291746 Clostridium glycolicum strain RD-1 prokMSA_id:075941 AJ318903 Clostridium glycolinum strain MH5 prokMSA_id:038819 AJ404682 ZF5 prokMSA_id:021834 AJ409003 clone HuCB31 prokMSA_id:040074 AY007244 Clostridium glycolicum prokMSA_id:083050 AY238334 Clostridium sp. MDA2315 prokMSA_id:084941 AY244773 Clostridium glycolicum prokMSA_id:014212 X76750 Clostridium glycolicum DSM 1288 . 2.30.4.5.7.002 OTU 1 seq prokMSA_id:014214 X73447 Clostridium irregularis ATCC 25756 . 2.30.4.5.7.999 poor quality 14 seqs prokMSA_id:046506 AF018047 Oim29 prokMSA_id:022387 AF018640 OIm26 prokMSA_id:037155 AF095565 Clostridium sp. clone Pz507 prokMSA_id:027773 AF191235 Clostridium sp. 27 prokMSA_id:046734 AF191236 Clostridium sp. 30 prokMSA_id:028311 AF193563 Clostridium a8r prokMSA_id:042991 AF261779 swine feces F2 prokMSA_id:046886 AF261782 swine feces F5 prokMSA_id:023074 AF261814 manure pit P6OTU3 prokMSA_id:050833 AF376259 ckncm026-A2.7 prokMSA_id:037116 AF473927 firmicute 128-3-6 prokMSA_id:041230 AF473939 firmicute 128-69 prokMSA_id:086679 AY214782 low G+C Gram-positive clone BB-1-B8 prokMSA_id:014213 M62421 Clostridium mayombei str. SFC-5 DSM 6539 . 2.30.4.5.8 C.DIFFICILE_SUBGROUP 7 seqs 2.30.4.5.8.001 OTU 6 seqs prokMSA_id:070276 AB075770 Clostridium difficile prokMSA_id:014216 AF072473 Clostridium difficile VPI 10463. prokMSA_id:014217 AF072474 Clostridium difficile str. 79685. prokMSA_id:090108 AY328358 inhufecA-7 prokMSA_id:088644 AY328361 inhufecA-22 prokMSA_id:014215 X73450 Clostridium difficile str. N6; Clark 90556-M6S; Mc Clung 1780 NCTC 2.30.4.5.8.999 poor quality 1 seq prokMSA_id:073190 AJ310756 Clostridium aff. difficile AA1 strain AA1 2.30.4.5.9 C.MANGENOTII_SUBGROUP 9 seqs 2.30.4.5.9.001 OTU 1 seq prokMSA_id:075216 AJ318905 Clostridium mangenotii strain MH8 2.30.4.5.9.999 poor quality 8 seqs prokMSA_id:074964 AJ318904 Clostridium mangenotii strain AG24 prokMSA_id:014220 D63594 clone UN109. prokMSA_id:014218 D63613 clone UN36. prokMSA_id:014219 D63636 clone UN84. prokMSA_id:014221 M59098 Clostridium mangenotii str. A33N ATCC 25761 . prokMSA_id:039198 U65716 Mastodon intestinal AN-8.37.71 prokMSA_id:039036 U65717 Mastodon intestinal AN-12-12 prokMSA_id:028659 U65718 Mastodon intestinal AN-14-19 2.30.4.5.10 PPS.ANAEROBIUS_SUBGROUP 23 seqs 2.30.4.5.10.001 OTU 1 seq prokMSA_id:033092 AF287763 Peptostreptococcus sp. oral clone CK035 2.30.4.5.10.002 OTU 1 seq prokMSA_id:014228 AF044947 Peptostreptococcus D1 str. D1. 2.30.4.5.10.003 OTU 7 seqs prokMSA_id:075534 AY167949 Swine manure RT-8A prokMSA_id:076636 AY167952 Swine manure RT-10B prokMSA_id:076533 AY167954 Swine manure RT-13B prokMSA_id:075535 AY167956 Swine manure RT-18B prokMSA_id:076167 AY167957 Swine manure RT-19A prokMSA_id:075733 AY167962 Swine manure RT-23A prokMSA_id:076083 AY167963 Swine manure 37-1 2.30.4.5.10.004 OTU 1 seq prokMSA_id:088684 AY321397 clone L27 2.30.4.5.10.005 OTU 1 seq prokMSA_id:089770 AY326462 Peptostreptococcus anaerobius NCTC 11460 2.30.4.5.10.999 poor quality 12 seqs prokMSA_id:046091 AB028415 oral RP55-6 prokMSA_id:022546 AF445208 Swine fecal FPC59 prokMSA_id:045835 AF445209 Swine fecal FPC60 prokMSA_id:030530 AF445241 Swine manure pit PPC96A prokMSA_id:061079 AF530311 clone cadhufec096h7 prokMSA_id:094736 AY368608 clone nc-17 prokMSA_id:014226 D14150 Peptostreptococcus anaerobius str. LK54 ATCC 27337 . prokMSA_id:014225 L04166 Peptostreptococcus sp. str. C. prokMSA_id:014227 L04168 Peptostreptococcus anaerobius str. LK54 ATCC 27337 . prokMSA_id:014222 Z28984 Peptostreptococcus anaerobius str. LK16 ATCC 27227. prokMSA_id:014224 Z29059 Peptostreptococcus anaerobius str. LK54 ATCC 27337 . prokMSA_id:014223 Z29060 Peptostreptococcus anaerobius str. LK54 ATCC 27337 . 2.30.5 C.PURINOLYTICUM_GROUP 269 seqs 2.30.5.1 C.PURINOLYTICUM_SUBGROUP 119 seqs 2.30.5.1.001 OTU 1 seq prokMSA_id:017818 AY013607 Banisveld landfill BVA18 2.30.5.1.002 OTU 5 seqs prokMSA_id:046867 AB036759 Pseudoramibacter alactolyticus strain:23263T prokMSA_id:030675 AB036760 Pseudoramibacter alactolyticus strain:146-3 prokMSA_id:020221 AB036761 Pseudoramibacter alactolyticus strain:9p-21 prokMSA_id:070847 AF287778 Firmicutes sp. oral clone CK057 prokMSA_id:014238 NONE Pseudoramibacter alactolyticus DSM 3980 . 2.30.5.1.003 OTU 1 seq prokMSA_id:024041 AF424411 low G+C Gram-positive MERTZ_21CM_91 2.30.5.1.004 OTU 1 seq prokMSA_id:027312 AY013610 Banisveld landfill BVA53 2.30.5.1.005 OTU 2 seqs prokMSA_id:028584 AJ297449 Acetobacterium aff. tundrae DSM 9173 prokMSA_id:014249 X96958 Acetobacterium paludosum str. Z-4092 DSM 8237 . 2.30.5.1.006 OTU 1 seq prokMSA_id:028721 AF227847 str. 77003 2.30.5.1.007 OTU 1 seq prokMSA_id:029789 AF295745 isolate RFLP 194 2.30.5.1.008 OTU 1 seq prokMSA_id:031598 AJ295640 KF-Gitt2-16 2.30.5.1.010 OTU 1 seq prokMSA_id:033448 AF113543 Thermohalobacter berrensis complete 2.30.5.1.011 OTU 1 seq prokMSA_id:034061 AF371692 clone p-3402-SwA2 2.30.5.1.013 OTU 1 seq prokMSA_id:035996 AF254407 UASB_117 complete 2.30.5.1.014 OTU 6 seqs prokMSA_id:014241 AF064241 Clostridium 'Butyribacterium methylotrophicum'. prokMSA_id:014242 AF064242 limosum str. PM31. prokMSA_id:037240 AF427914 clone 9D prokMSA_id:014235 M59120 limosum ATCC 8486 . prokMSA_id:014243 U67159 limosum str. kist612. prokMSA_id:014240 X96961 callanderi str. FD DSM 3662 . 2.30.5.1.015 OTU 1 seq prokMSA_id:057452 AJ441231 firmicute clone P. palm C/A 17 2.30.5.1.016 OTU 1 seq prokMSA_id:049375 AF295751 isolate RFLP 415 2.30.5.1.017 OTU 1 seq prokMSA_id:060347 AF535205 clone CD4A6 2.30.5.1.018 OTU 27 seqs prokMSA_id:032798 AB030612 epsilon 1055 prokMSA_id:066115 AB074937 low G+C Gram-positive clone:KU21 prokMSA_id:075865 AB086092 Acetobacterium sp. TM20-2 prokMSA_id:014234 AF132739 Acetobacterium psammolithicum str. CN-E. prokMSA_id:034853 AF447128 clone TDC-S1:5 prokMSA_id:070260 AF479584 Acetobacterium sp. HAAP-1 prokMSA_id:066182 AJ488081 clone IB-28 prokMSA_id:077494 AJ535706 Acetobacterium sp. clone A4 prokMSA_id:079278 AY185310 Acetobacterium sp. clone ARC01 prokMSA_id:079235 AY185311 Acetobacterium sp. clone ARC03 prokMSA_id:079314 AY185312 Acetobacterium sp. clone ARC05 prokMSA_id:079573 AY185315 Acetobacterium sp. clone ARC44 prokMSA_id:079515 AY185318 Acetobacterium sp. clone AKS02 prokMSA_id:079098 AY185319 Acetobacterium sp. clone AKS04 prokMSA_id:079162 AY185321 Acetobacterium sp. clone AKS17 prokMSA_id:079093 AY185323 Acetobacterium sp. clone AKS29 prokMSA_id:079463 AY185326 Acetobacterium sp. clone AKS48 prokMSA_id:079527 AY185327 Acetobacterium sp. clone AKS55 prokMSA_id:079459 AY185330 Acetobacterium sp. clone AKS70 prokMSA_id:082262 AY214194 clone ZZ14C8 prokMSA_id:081143 AY214195 clone ZZ14C10 prokMSA_id:014233 X95232 clone Aspo4. prokMSA_id:014237 X96954 Acetobacterium woodii str. WB1 DSM 1030 . prokMSA_id:014230 X96955 Acetobacterium wieringae str. C DSM 1911 . prokMSA_id:014255 X96956 Acetobacterium carbinolicum str. WoProp 1 DSM 2925 . prokMSA_id:014232 X96957 Acetobacterium malicum str. MuME1 DSM 4132 . prokMSA_id:014257 X96959 Acetobacterium fimetarium str. Z-4290 DSM 8238 . 2.30.5.1.019 OTU 1 seq prokMSA_id:066116 AB074936 low G+C Gram-positive clone:KU25 2.30.5.1.020 OTU 1 seq prokMSA_id:067841 AY082466 low G+C Gram-positive clone 44a-B1-37 2.30.5.1.021 OTU 1 seq prokMSA_id:014231 X96960 Acetobacterium bakii str. Z-4391 DSM 8239 . 2.30.5.1.022 OTU 1 seq prokMSA_id:014239 AF142795 clone ACE-18. 2.30.5.1.023 OTU 2 seqs prokMSA_id:014245 AB015270 str. JTB215. prokMSA_id:096218 AY211678 Gram-positive clone GoM GC234 616E 2.30.5.1.024 OTU 2 seqs prokMSA_id:014252 M23927 barkeri ATCC 25849 . prokMSA_id:014248 NONE barkeri. 2.30.5.1.025 OTU 1 seq prokMSA_id:014250 L10086 thermomarinus. 2.30.5.1.026 OTU 1 seq prokMSA_id:014251 AF129868 clone BC13. 2.30.5.1.027 OTU 1 seq prokMSA_id:014253 AF073898 aggregans str. SR12 DSM 12183. 2.30.5.1.028 OTU 1 seq prokMSA_id:077666 AB089003 Clostridiaceae clone:Rs-G08 2.30.5.1.029 OTU 1 seq prokMSA_id:077821 AB088988 clone:Rs-H81 2.30.5.1.030 OTU 1 seq prokMSA_id:078343 AB088962 clone:Rs-J37 2.30.5.1.031 OTU 1 seq prokMSA_id:079549 AY185325 Acetobacterium sp. clone AKS42 2.30.5.1.032 OTU 1 seq prokMSA_id:083350 AY231323 clone ER1_23 2.30.5.1.033 OTU 1 seq prokMSA_id:085227 AY231313 clone ER1_13 2.30.5.1.034 OTU 1 seq prokMSA_id:089438 AY245472 low G+C Gram-positive ML17_DFM1 2.30.5.1.035 OTU 1 seq prokMSA_id:097742 AY211674 Gram-positive clone GoM GC234 604E 2.30.5.1.999 poor quality 48 seqs prokMSA_id:024718 AB011306 clone: MUG14 prokMSA_id:030741 AF096600 isolate BSR30 prokMSA_id:042105 AF142844 BURTON-25 prokMSA_id:038856 AF218219 clone LSV prokMSA_id:022864 AF295748 isolate RFLP 412 prokMSA_id:034236 AF295752 isolate RFLP 419 prokMSA_id:025857 AF295754 isolate RFLP 421 prokMSA_id:054719 AF427927 clone 3G prokMSA_id:046282 AF427933 clone 4E prokMSA_id:036546 AF447130 clone TDC-S1:6 prokMSA_id:043830 AF447144 clone TDC-S1:22 prokMSA_id:042307 AF473918 firmicute 128-2-3 prokMSA_id:054111 AF473946 firmicute 140-2-12 prokMSA_id:045806 AF473952 firmicute A190-13 prokMSA_id:081922 AF510411 isolate TGGE gel band B4 prokMSA_id:069518 AF544886 Gram-positive clone D1-61 prokMSA_id:034828 AJ287709 low G+C Gram-positive 414ev prokMSA_id:028058 AJ421818 clone CFA-6MS-6 prokMSA_id:022142 AY013613 Banisveld landfill BVA76a prokMSA_id:045533 AY013614 Banisveld landfill BVA76b prokMSA_id:041083 AY013615 Banisveld landfill BVA86a prokMSA_id:041185 AY038433 clone CD5E12 prokMSA_id:043043 AY038498 firmicute clone CD1F7 prokMSA_id:034692 AY038525 clone CD1C10 prokMSA_id:084143 AY092321 clone BI106 prokMSA_id:082625 AY092322 clone BI73 prokMSA_id:095736 AY160818 clone COB P1-23 prokMSA_id:098077 AY160833 clone COB P5-15 prokMSA_id:082134 AY187507 clone SD22 prokMSA_id:081659 AY193941 clone SB109 prokMSA_id:097166 AY211738 Gram-positive clone GoM GC185 601S6 prokMSA_id:081465 AY217415 MTCE-T2 1A prokMSA_id:088507 AY245471 low G+C Gram-positive ML17_DSV2 prokMSA_id:089478 AY245474 low G+C Gram-positive ML21_DSV8 prokMSA_id:090099 AY245477 low G+C Gram-positive ML21_DFM1 prokMSA_id:084737 AY256577 DGGE band A2-8 prokMSA_id:085770 AY271759 Acetobacterium sp. prokMSA_id:089746 AY312403 Alkalibacterium saccharovorans strain Z-79820 prokMSA_id:097820 AY422354 Anaerobic U3/B-2 prokMSA_id:014244 L34612 angustum ATCC 43737 . prokMSA_id:014229 M59084 Clostridium acidiurici ATCC 7906 . prokMSA_id:014254 M60491 Clostridium purinolyticum ATCC 33906 . prokMSA_id:014246 NONE limosum DSM 20543 . prokMSA_id:014256 U46533 clone EUBA7. prokMSA_id:037861 U81688 clone vadinBC53 prokMSA_id:028128 U81756 clone vadinHB61 prokMSA_id:014247 X91424 clone A1ghqi. prokMSA_id:014236 Z69311 str. s7. 2.30.5.2 C.HYDROXYBENZOICUM_SUBGROUP 30 seqs 2.30.5.2.002 OTU 1 seq prokMSA_id:034493 AF427155 Clostridium sp. LTR1 2.30.5.2.003 OTU 1 seq prokMSA_id:034536 AF276460 clone RFLP 62E 2.30.5.2.004 OTU 1 seq prokMSA_id:036368 Z73447 species isolate Boom-7m-01 2.30.5.2.006 OTU 7 seqs prokMSA_id:032248 AF349757 TCE41 prokMSA_id:051443 AJ404680 ZF2 prokMSA_id:041927 AJ404684 MK2-921 prokMSA_id:082336 AY217383 LTCE-T2A 2A prokMSA_id:082166 AY217384 LTCE-T2A 10A prokMSA_id:081271 AY217427 MTCE-T2 10D prokMSA_id:082374 AY217438 MTCE-T2 9H 2.30.5.2.007 OTU 1 seq prokMSA_id:049196 AF433166 Clostridium hongkongensis 2.30.5.2.008 OTU 1 seq prokMSA_id:059829 AY133357 clone OB3_23 2.30.5.2.009 OTU 1 seq prokMSA_id:066488 AY100602 clone cvf61077 2.30.5.2.010 OTU 1 seq prokMSA_id:014259 AF142889 clone EKHO-5. 2.30.5.2.011 OTU 1 seq prokMSA_id:014260 Z73443 str. Boom-3m-09. 2.30.5.2.012 OTU 1 seq prokMSA_id:081411 AY217394 LTCE-T2A 9C 2.30.5.2.013 OTU 1 seq prokMSA_id:081477 AY217448 BTCE-T2 2H 2.30.5.2.014 OTU 1 seq prokMSA_id:085712 AY221992 Sedimentibacter sp. BRS2 2.30.5.2.015 OTU 1 seq prokMSA_id:086628 AY239562 clone CARB_ER1_13 2.30.5.2.999 poor quality 11 seqs prokMSA_id:043379 AF400098 Da3-41 prokMSA_id:082825 AY092250 clone BM1 prokMSA_id:084388 AY092251 clone BM137 prokMSA_id:082637 AY092252 clone BM113 prokMSA_id:084715 AY092253 clone BM142 prokMSA_id:082585 AY092254 clone BM115 prokMSA_id:084575 AY092255 clone BF39 prokMSA_id:081877 AY217395 LTCE-T2A 7D prokMSA_id:082185 AY217410 BTCE-T2 3D prokMSA_id:081238 AY217444 BTCE-T2 1D prokMSA_id:014258 L11305 Clostridium hydroxybenzoicum str. JW/Z-1 ATCC 51151 . 2.30.5.3 TSS.PRAEACUTA_SUBGROUP 41 seqs 2.30.5.3.001 OTU 1 seq prokMSA_id:017195 AF408646 clone PCEDR696 2.30.5.3.002 OTU 1 seq prokMSA_id:059568 AY134899 Peptostreptococcus sp. oral clone EX153 2.30.5.3.003 OTU 1 seq prokMSA_id:019304 AF280819 tbr1-1 2.30.5.3.004 OTU 1 seq prokMSA_id:026654 AF395426 Eub No. 6 2.30.5.3.005 OTU 2 seqs prokMSA_id:035017 AF358114 Acetanaerobacter thermotolerans prokMSA_id:052800 AJ318205 Clostridium sp. 4 2.30.5.3.006 OTU 1 seq prokMSA_id:038592 AF317361 feedlot manure B1 2.30.5.3.007 OTU 1 seq prokMSA_id:046117 AF317363 feedlot manure B117 2.30.5.3.008 OTU 1 seq prokMSA_id:052451 AB052397 Symbiobacterium sp. HN1 2.30.5.3.009 OTU 4 seqs prokMSA_id:014264 X77848 Clostridium hastiforme DSM 5675 . prokMSA_id:014262 X80832 Tissierella praeacuta NCTC 11158. prokMSA_id:014261 X80833 Tissierella praeacuta ATCC 25539 . prokMSA_id:014263 X80841 Clostridium hastiforme DSM 5675 . 2.30.5.3.010 OTU 1 seq prokMSA_id:014265 X80227 Tissierella creatinophila str. KRE 4 DSM 6911 . 2.30.5.3.011 OTU 1 seq prokMSA_id:014266 X75909 Clostridium sp. str. BN II. 2.30.5.3.012 OTU 1 seq prokMSA_id:014267 X77847 Clostridium filamentosum DSM 6645. 2.30.5.3.013 OTU 1 seq prokMSA_id:014268 Z69293 Clostridium ultunense str. BS. 2.30.5.3.014 OTU 1 seq prokMSA_id:014269 AJ002593 Clostridium sp. str. PO. 2.30.5.3.015 OTU 1 seq prokMSA_id:070715 AF317371 feedlot manure B37 2.30.5.3.016 OTU 1 seq prokMSA_id:072660 AF280824 tbr1-9 2.30.5.3.017 OTU 1 seq prokMSA_id:082015 AY217429 MTCE-T2 1G 2.30.5.3.018 OTU 1 seq prokMSA_id:084656 AF550609 Peptostreptococcaceae 19gly3 2.30.5.3.019 OTU 1 seq prokMSA_id:088113 AF443595 Clostridium sp. ArC6 2.30.5.3.020 OTU 1 seq prokMSA_id:094465 AY368604 clone nc-13 2.30.5.3.021 OTU 1 seq prokMSA_id:094599 AY368610 clone nc-19 2.30.5.3.999 poor quality 16 seqs prokMSA_id:024943 AB029414 20-45:1 prokMSA_id:047421 AF175635 WJGRT-117 prokMSA_id:042166 AF175656 WJGRT-160 prokMSA_id:019190 AF175659 WJGRT-168 prokMSA_id:029110 AF175669 WJGRT-198 prokMSA_id:027395 AF181920 clone 9d/10 prokMSA_id:047715 AF261795 manure pit P34 prokMSA_id:073201 AF317366 feedlot manure B2 prokMSA_id:020347 AF353277 compost clone SSCP6d5-7 prokMSA_id:073854 AF364947 clone clH03 prokMSA_id:039404 AF390936 clone ICBBB9 prokMSA_id:043716 AF390939 clone ICBBC4 prokMSA_id:043749 AF445244 Swine manure pit PPC33B prokMSA_id:080214 AY161241 clone SSADM_EE9 prokMSA_id:081561 AY217401 PTCE-T2A 4C prokMSA_id:087909 AY261404 clone RFLP U43 2.30.5.4 HLC.KUNZII_SUBGROUP 3 seqs 2.30.5.4.001 OTU 1 seq prokMSA_id:063676 AF521147 Peptostreptococcaceae STV110602 2.30.5.4.002 OTU 1 seq prokMSA_id:014270 X69837 Helcococcus kunzii NCFB 2900 . 2.30.5.4.003 OTU 1 seq prokMSA_id:014271 Y16279 Helcococcus 'CCUG 37441' str. s840-96-2 CCUG 37441. 2.30.5.5 PPS.MICROS_SUBGROUP 31 seqs 2.30.5.5.001 OTU 12 seqs prokMSA_id:022487 AF201984 human oral A44 prokMSA_id:028712 AF385543 Peptostreptocooccus sp. oral clone FG014 prokMSA_id:036599 AF385559 Peptostreptococcus sp. oral clone BS044 prokMSA_id:083408 AF542231 Peptostreptococcus micros strain ATCC 33270 prokMSA_id:068360 AJ277208 Peptostreptococcus sp. strain CCUG 42997 prokMSA_id:083665 AY207059 Peptostreptococcus sp. P4P_31 P3 prokMSA_id:086380 AY244772 Peptostreptococcus sp. 2002-69396 prokMSA_id:087698 AY286545 Peptostreptococcus sp. MDA2346-2 prokMSA_id:090216 AY323523 Peptostreptococcus micros prokMSA_id:092862 AY349390 Peptostreptococcus sp. oral clone FJ023 prokMSA_id:092329 AY349391 Peptostreptococcus sp. oral clone FL008 prokMSA_id:014272 U43700 str. PUS8.29. 2.30.5.5.002 OTU 7 seqs prokMSA_id:087735 AB109769 Finegoldia magna operon 23S 5S complete prokMSA_id:086757 AB109770 Finegoldia magna rrnB operon 23S 5S tRNA-Ile complete prokMSA_id:087725 AB109771 Finegoldia magna rrnC operon complete prokMSA_id:087971 AB109772 Finegoldia magna rrnD operon complete prokMSA_id:084501 AF542227 Finegoldia magna strain CCUG 17636 prokMSA_id:081082 AY169413 Finegoldia magna clone 1-9 prokMSA_id:078202 AY171375 clone s4 2.30.5.5.003 OTU 1 seq prokMSA_id:090643 AY269034 Peptostreptococcus sp. clone FX38-1 2.30.5.5.999 poor quality 11 seqs prokMSA_id:046465 AB028442 oral RP55-45 prokMSA_id:046735 AB038361 Catonia barnesae prokMSA_id:068118 AF365618 clone BT60MF7BE9 prokMSA_id:068115 AF365621 clone BT60MF7BF9 prokMSA_id:068590 AF486680 clone W6-38-SC1-101 prokMSA_id:068578 AF486694 clone W6-38-SC1-116 prokMSA_id:074327 AJ514248 Peptostreptococcus sp. isolate MBRG 6.4 prokMSA_id:014273 D14143 Peptostreptococcus micros GIFU 7701. prokMSA_id:014274 D14149 Peptostreptococcus magnus ATCC 15794 . prokMSA_id:049485 U60326 Peptostreptococcus micros ATCC 33270 Sm prokMSA_id:019564 U60327 Peptostreptococcus micros HG 1467 Rg 2.30.5.6 PPS.IVORII_SUBGROUP 6 seqs 2.30.5.6.001 OTU 1 seq prokMSA_id:068341 AF481225 Peptostreptococcus sp. E3_32 E1 oral isolate 2.30.5.6.002 OTU 1 seq prokMSA_id:014275 Y07840 Peptostreptococcus ivorii str. SBH093 DSM 10022 . 2.30.5.6.003 OTU 1 seq prokMSA_id:070045 AF317377 feedlot manure B56 2.30.5.6.004 OTU 1 seq prokMSA_id:071841 AF317387 feedlot manure B90 2.30.5.6.999 poor quality 2 seqs prokMSA_id:038277 AF445243 Swine manure pit PPC41 prokMSA_id:014276 D14153 Peptostreptococcus prevotii GIFU 8124. 2.30.5.7 PPS.INDOLICUS_SUBGROUP 25 seqs 2.30.5.7.001 OTU 1 seq prokMSA_id:059528 AF538859 Peptostreptococcus sp. oral clone P4PA_156 P4 2.30.5.7.002 OTU 1 seq prokMSA_id:014277 D14147 Peptostreptococcus indolicus ATCC 29427 . 2.30.5.7.003 OTU 4 seqs prokMSA_id:072897 AF317364 feedlot manure B126 prokMSA_id:086390 AY244778 Peptoniphilus sp. 2002-38328 prokMSA_id:083803 AY244779 Peptoniphilus sp. 2002-2300004 prokMSA_id:014278 Y07839 Peptostreptococcus harei str. SBH432 DSM 10020 . 2.30.5.7.004 OTU 1 seq prokMSA_id:014280 D14141 Peptostreptococcus lacrimalis GIFU 7667 . 2.30.5.7.005 OTU 1 seq prokMSA_id:014281 X90471 Peptostreptococcus sp. str. 9succ1. 2.30.5.7.006 OTU 3 seqs prokMSA_id:014282 AF044946 Peptostreptococcus S1 str. S1. prokMSA_id:087119 AY153430 Peptoniphilus indolicus prokMSA_id:086504 AY153431 Peptoniphilus indolicus 2.30.5.7.007 OTU 1 seq prokMSA_id:070787 AF287766 sp. oral clone DA014 2.30.5.7.008 OTU 1 seq prokMSA_id:071578 AF317385 feedlot manure B85 2.30.5.7.009 OTU 1 seq prokMSA_id:073616 AF317368 feedlot manure B29 2.30.5.7.010 OTU 1 seq prokMSA_id:075475 AY167967 Swine manure 37-5 2.30.5.7.011 OTU 1 seq prokMSA_id:081585 AY169425 Finegoldia magna clone 1-68 2.30.5.7.012 OTU 1 seq prokMSA_id:083175 AF542230 Peptoniphilus lacrimalis strain CCUG 31350 2.30.5.7.013 OTU 1 seq prokMSA_id:084857 AF542228 Peptoniphilus asaccharolyticus strain CCUG 9988 2.30.5.7.999 poor quality 7 seqs prokMSA_id:030440 AB028383 oral AP60-24 prokMSA_id:042357 AB038360 Peptostreptococcus genosp. 4 prokMSA_id:038571 AF261805 manure pit P318 prokMSA_id:068114 AF365623 clone BT60MF7BG8 prokMSA_id:085026 AY256606 DGGE band S2-7 prokMSA_id:014283 D14138 Peptostreptococcus asaccharolyticus ATCC 14963 . prokMSA_id:014279 D14145 Peptostreptococcus asaccharolyticus GIFU 7717. 2.30.5.8 PPS.TETRADIUS_SUBGROUP 14 seqs 2.30.5.8.001 OTU 2 seqs prokMSA_id:030062 AF408269 Peptostreptococcus sp. clone KL-59-7-12 prokMSA_id:084746 AF542232 Anaerococcus prevotii strain CCUG 41932 2.30.5.8.002 OTU 1 seq prokMSA_id:014289 D14154 Peptostreptococcus lactolyticus GIFU 8586 . 2.30.5.8.003 OTU 1 seq prokMSA_id:014290 Y07841 Peptostreptococcus octavius str. Davey 1 NCTC 9810 . 2.30.5.8.004 OTU 1 seq prokMSA_id:084198 AF542233 Anaerococcus lactolyticus strain CCUG 31351 2.30.5.8.005 OTU 1 seq prokMSA_id:085470 AF542229 Anaerococcus vaginalis strain CCUG 31349 2.30.5.8.006 OTU 1 seq prokMSA_id:085988 AF542234 Anaerococcus tetradius strain CCUG 46590 2.30.5.8.999 poor quality 7 seqs prokMSA_id:025130 AF181921 clone 9d/12 prokMSA_id:061096 AF530294 clone cadhufec006h7 prokMSA_id:014285 D14139 Peptostreptococcus prevotii ATCC 9321 . prokMSA_id:014286 D14140 Peptostreptococcus hydrogenalis GIFU 7662 . prokMSA_id:014284 D14142 Peptostreptococcus tetradius GIFU 7672 . prokMSA_id:014288 D14146 Peptostreptococcus vaginalis GIFU 12669 . prokMSA_id:014287 D14152 Peptostreptococcus asaccharolyticus GIFU 7946. 2.30.6 ANAEROBIC_HALOPHILES 72 seqs 2.30.6.1 HLA.CHITINOVORANS_SUBGROUP 20 seqs 2.30.6.1.001 OTU 1 seq prokMSA_id:069790 Y18485 Orenia salinaria 2.30.6.1.002 OTU 1 seq prokMSA_id:014292 U32593 Haloanaerobacter lacunaris str. Z-7888 DSM 6640 . 2.30.6.1.003 OTU 2 seqs prokMSA_id:014294 X89076 Haloanaerobacter chitinovorans str. W5C8 OGC 229 . prokMSA_id:014293 Y14212 Haloanaerobacter salinarius str. SG3903. 2.30.6.1.004 OTU 1 seq prokMSA_id:014295 X89075 Haloanaerobacter lacunaris str. Z-7888 DSM 6640 . 2.30.6.1.005 OTU 1 seq prokMSA_id:014296 AF142899 clone EKHO-16. 2.30.6.1.006 OTU 1 seq prokMSA_id:014299 U32596 Haloanaerobacter chitinovorans str. W5C8 OCM 229 . 2.30.6.1.007 OTU 1 seq prokMSA_id:014300 U32595 Halobacteroides halobius str. MD-1 ATCC 35273 . 2.30.6.1.008 OTU 1 seq prokMSA_id:014301 X89074 Halobacteroides halobius str. MD-1 DSM 5150 . 2.30.6.1.009 OTU 1 seq prokMSA_id:014302 X89073 Orenia marismortui str. DY-1 DSM 5156 . 2.30.6.1.010 OTU 1 seq prokMSA_id:014303 X95817 Natroniella acetigena. 2.30.6.1.011 OTU 1 seq prokMSA_id:014304 AF152595 Orenia sivashensis str. Z-7191. 2.30.6.1.012 OTU 1 seq prokMSA_id:083871 AJ495677 low G+C Gram-positive isolate SB-31 2.30.6.1.013 OTU 1 seq prokMSA_id:096969 AJ575952 Bacteroidetes clone T2-PP12-516 2.30.6.1.999 poor quality 6 seqs prokMSA_id:014298 AJ238119 Halobacteroides elegans str. Z-7287. prokMSA_id:090134 AJ574874 clone GR115-17 prokMSA_id:072053 AY014858 Halonatronum saccharophilum prokMSA_id:086738 AY281346 Orenia sp. AND2 prokMSA_id:014291 L37421 Haloanaerobacter lacunaris str. Z-7888 DSM 6640 . prokMSA_id:014297 L37423 Halobacteroides halobius str. Z-7287 DSM 6639. 2.30.6.2 ACH.ARABATICUM_SUBGROUP 6 seqs 2.30.6.2.001 OTU 1 seq prokMSA_id:045870 AF310247 Selenohalobacter shriftii 2.30.6.2.002 OTU 1 seq prokMSA_id:014307 M59122 Sporohalobacter lortetii str. MD-2 ATCC 35059 . 2.30.6.2.003 OTU 1 seq prokMSA_id:014308 X89077 Acetohalobium arabaticum str. Z-7288 DSM 5501 . 2.30.6.2.999 poor quality 3 seqs prokMSA_id:067924 AF365847 clone BT60PA10BF1 prokMSA_id:014306 L37422 Acetohalobium arabaticum str. Z-7288 DSM 5501 . prokMSA_id:014305 Z21974 Acetohalobium arabaticum str. Z-7288. 2.30.6.3 HALOANAEROBIUM_GROUP 46 seqs 2.30.6.3.1 HTT.ORENII_SUBGROUP 9 seqs 2.30.6.3.1.001 OTU 1 seq prokMSA_id:032742 AF379690 clone SL16 2.30.6.3.1.002 OTU 1 seq prokMSA_id:014309 L22016 Halothermothrix orenii str. H168 OCM 544 . 2.30.6.3.1.003 OTU 1 seq prokMSA_id:014310 AF142892 clone EKHO-9. 2.30.6.3.1.999 poor quality 6 seqs prokMSA_id:043389 AF142969 TAYNAYA-21 prokMSA_id:074242 AF544845 Gram-positive clone D1C-1 prokMSA_id:069695 AF544847 Gram-positive clone D1C-4 prokMSA_id:069061 AF544853 Gram-positive clone D1C-33 prokMSA_id:073200 AF544860 Gram-positive clone D1C-58 prokMSA_id:046166 AJ005995 clone TBS6 2.30.6.3.2 HCL.CELLULOLYTICA_SUBGROUP 7 seqs 2.30.6.3.2.001 OTU 1 seq prokMSA_id:014311 X89072 Halocella cellulolytica str. Z-10151 DSM 7362. 2.30.6.3.2.002 OTU 1 seq prokMSA_id:014312 AF142885 clone EKHO-1. 2.30.6.3.2.999 poor quality 5 seqs prokMSA_id:055538 AB087368 clone:F73 prokMSA_id:055970 AF544855 Gram-positive clone D1C-42 prokMSA_id:084341 AJ495674 low G+C Gram-positive isolate SB-28 prokMSA_id:086587 AJ495676 low G+C Gram-positive isolate SB-30 prokMSA_id:082470 AJ495686 low G+C Gram-positive isolate SB-41 2.30.6.3.3 HAN.PRAEVALENS_SUBGROUP 30 seqs 2.30.6.3.3.001 OTU 5 seqs prokMSA_id:014320 AB023308 Haloanaerobium fermentum str. R-9. prokMSA_id:023398 AJ309520 Halanaerobium sp. KT-8-13 prokMSA_id:049272 AJ309521 Halanaerobium sp. S5L4 prokMSA_id:023710 AJ309524 Red Sea KT-2K23 prokMSA_id:024600 AJ309525 Red Sea KT-2K28 2.30.6.3.3.002 OTU 7 seqs prokMSA_id:014319 AB022034 Haloanaerobium praevalens DSM 2228 . prokMSA_id:014321 AB022035 Haloanaerobium praevalens str. strain S-8 from the can of Swedish prokMSA_id:049598 AJ309519 Halanaerobium sp. KT-2/3-3 prokMSA_id:014315 U32594 Haloanaerobium acetoethylicum str. EIGI DSM 3532 . prokMSA_id:014326 X89069 Haloanaerobium saccharolyticum subsp. saccharolyticum str. Z-7787 prokMSA_id:014324 X89070 Haloanaerobium saccharolyticum subsp. senegalense DSM 7379 . prokMSA_id:014316 X89071 Haloanaerobium acetoethylicum str. EIGI DSM 3532 . 2.30.6.3.3.003 OTU 1 seq prokMSA_id:014313 L22890 Haloanaerobium salsugo str. VS-752 ATCC 51327. 2.30.6.3.3.004 OTU 1 seq prokMSA_id:014314 L39787 Haloanaerobium lacuroseus str. H200 DSM 10165 . 2.30.6.3.3.005 OTU 1 seq prokMSA_id:014323 Z49116 Haloanaerobium saccharolyticum subsp. senegalense str. H150. 2.30.6.3.3.006 OTU 1 seq prokMSA_id:014328 Z49115 Haloanaerobium saccharolyticum subsp. saccharolyticum str. Z-7787. 2.30.6.3.3.007 OTU 1 seq prokMSA_id:077202 AY164416 Halanaerobiales clone DLIB-68 2.30.6.3.3.008 OTU 1 seq prokMSA_id:083922 AJ495622 low G+C Gram-positive isolate SA-23 2.30.6.3.3.009 OTU 1 seq prokMSA_id:084078 AJ495681 low G+C Gram-positive isolate SB-35 2.30.6.3.3.999 poor quality 11 seqs prokMSA_id:082471 AJ495614 low G+C Gram-positive isolate SA-14 prokMSA_id:086287 AJ495640 low G+C Gram-positive isolate SA-44 prokMSA_id:082643 AJ495682 low G+C Gram-positive isolate SB-36 prokMSA_id:083446 AJ495693 low G+C Gram-positive isolate SB-48 prokMSA_id:085149 AY256600 DGGE band A2-9 prokMSA_id:014327 L37424 Haloanaerobium saccharolyticum subsp. saccharolyticum str. Z-7787 prokMSA_id:014318 M59123 Haloanaerobium praevalens ATCC 33744 . prokMSA_id:014329 U76632 Haloanaerobium congolense SEBR 4224 . prokMSA_id:014325 U86446 Haloanaerobium kushnerii ATCC 700103. prokMSA_id:014317 U86448 Haloanaerobium acetoethylicum. prokMSA_id:014322 X81850 Haloanaerobium alcaliphilum str. GSLS DSM 8275 . 2.30.7 BACILLUS-LACTOBACILLUS-STREPTOCOCCUS_SUBDIVISION 7127 seqs 2.30.7.1 ALICYCLOBACILLUS_GROUP 189 seqs 2.30.7.1.001 OTU 2 seqs prokMSA_id:024598 AF450135 Alicyclobacillus sp. AGC-2 prokMSA_id:016300 AY007662 GSM 2.30.7.1.002 OTU 2 seqs prokMSA_id:017688 AF134868 Pasteuria sp. NA prokMSA_id:086730 AF516396 Pasteuria nishizawae 2.30.7.1.003 OTU 5 seqs prokMSA_id:018589 AB042057 Alicyclobacillus acidoterrestris prokMSA_id:018608 AB042058 Alicyclobacillus acidoterrestris prokMSA_id:025597 AB059675 Alicyclobacillus acidoterrestris strain:DSM 2498 prokMSA_id:030963 AB059676 Alicyclobacillus acidoterrestris strain:DSM 3924 prokMSA_id:023511 AJ133631 Alicyclobacillus acidoterrestris strain DSM 3922T 2.30.7.1.004 OTU 32 seqs prokMSA_id:014335 AB004579 Alicyclobacillus sp. str. UZ-1. prokMSA_id:014336 AB004580 Alicyclobacillus sp. str. MIH-2. prokMSA_id:014337 AB004581 Alicyclobacillus sp. str. KHA-31. prokMSA_id:038100 AB042056 Alicyclobacillus acidocaldarius prokMSA_id:024070 AB059663 Alicyclobacillus acidocaldarius strain:DSM 453 prokMSA_id:027630 AB059664 Alicyclobacillus acidocaldarius strain:DSM 454 prokMSA_id:038406 AB059665 Alicyclobacillus acidocaldarius strain:DSM 455 prokMSA_id:034693 AB059666 Alicyclobacillus sp. DSM 6481 strain:DSM 6481 prokMSA_id:039237 AB059667 Alicyclobacillus sp. FR-3 strain:DSM 11983 prokMSA_id:045336 AB059668 Alicyclobacillus hesperidum strain:DSM 11984T prokMSA_id:037680 AB059669 Alicyclobacillus sp. DSM 12490 strain:DSM 12490 prokMSA_id:049429 AB059670 Alicyclobacillus acidocaldarius strain:DSM 448 prokMSA_id:027818 AB059671 Alicyclobacillus acidocaldarius strain:DSM 449 prokMSA_id:032908 AB059672 Alicyclobacillus acidocaldarius strain:DSM 451 prokMSA_id:034592 AB059673 Alicyclobacillus acidocaldarius strain:DSM 452 prokMSA_id:030727 AB059674 Alicyclobacillus acidocaldarius strain:DSM 11297 prokMSA_id:048546 AB060161 Alicyclobacillus sp. UZ 1 prokMSA_id:041149 AB060162 Alicyclobacillus sp. MIH 2 prokMSA_id:018771 AB060163 Alicyclobacillus sp. KHC 3 prokMSA_id:036997 AB060164 Alicyclobacillus sp. KHA 31 prokMSA_id:041120 AB060165 Alicyclobacillus sp. MIH 332 prokMSA_id:026438 AB060166 Alicyclobacillus acidocaldarius prokMSA_id:067142 AB084128 Alicyclobacillus sendainensis prokMSA_id:094906 AB089859 Alicyclobacillus acidocaldarius subsp. rittmannii prokMSA_id:030162 AJ133634 Alicyclobacillus sp. strain FR-3 prokMSA_id:023797 AJ133635 Alicyclobacillus sp. strain FR-6 prokMSA_id:070726 AJ438297 Alicyclobacillus sp. R-10926 prokMSA_id:063594 AJ493667 Alicyclobacillus acidocaldarius subsp. rittmannii prokMSA_id:055934 AJ496806 Alicyclobacillus acidocaldarius strain DSM 446 prokMSA_id:076073 AY160968 Alicyclobacillus sp. PK-1 prokMSA_id:014334 X60742 Alicyclobacillus acidocaldarius str. 104-1A DSM 446 . prokMSA_id:014345 X60743 Alicyclobacillus acidoterrestris DSM 3923. 2.30.7.1.005 OTU 4 seqs prokMSA_id:019970 AB059678 Alicyclobacillus hesperidum strain:DSM 12489T prokMSA_id:023138 AB059679 Alicyclobacillus hesperidum strain:DSM 12766 prokMSA_id:038085 AJ133632 Alicyclobacillus hesperidensis strain FR-1B prokMSA_id:046515 AJ133633 Alicyclobacillus hesperidensis strain FR-11 2.30.7.1.006 OTU 3 seqs prokMSA_id:021716 AF226671 BU138 prokMSA_id:038687 AF460984 Sulfobacillus sp. K55 prokMSA_id:014351 X72853 gram neg iron oxidizing related to isolates BC and ALV clone A70. 2.30.7.1.007 OTU 5 seqs prokMSA_id:021935 AB042059 Alicyclobacillus cycloheptanicus prokMSA_id:045506 AB059680 Alicyclobacillus cycloheptanicus strain:DSM 4005 prokMSA_id:040466 AB059681 Alicyclobacillus cycloheptanicus strain:DSM 4007 prokMSA_id:014346 X51928 Alicyclobacillus cycloheptanicus. prokMSA_id:063190 X52489 Bacillus cycloheptanicus 2.30.7.1.008 OTU 2 seqs prokMSA_id:023447 AB059677 Alicyclobacillus sp. TA 67T strain:TA 67T prokMSA_id:058498 AB076660 Alicyclobacillus acidiphilus 2.30.7.1.010 OTU 1 seq prokMSA_id:025382 AF213055 Sulfobacillus sp. Fras1 2.30.7.1.011 OTU 4 seqs prokMSA_id:041279 AF460985 Sulfobacillus sp. P3-5 prokMSA_id:028088 AJ306700 Sulfobacillus sp. strain ML1/10-46 prokMSA_id:026544 AY007663 Sulfobacillus montserratensis strain L15 prokMSA_id:058320 AY140239 Sulfobacillus sp. Y0017 2.30.7.1.012 OTU 1 seq prokMSA_id:029451 AJ306699 Sulfobacillus sp. strain ML1/10-22 2.30.7.1.013 OTU 1 seq prokMSA_id:029823 AB052970 Mixotrophic iron-oxidizing 2.30.7.1.015 OTU 1 seq prokMSA_id:073543 AY007664 Sulfobacillus ambivalens strain RIV14 2.30.7.1.018 OTU 5 seqs prokMSA_id:095123 AB089842 Sulfobacillus acidophilus prokMSA_id:066335 AF507964 Sulfobacillus sp. YTF3 prokMSA_id:033263 AY007665 Sulfobacillus yellowstonensis strain YTF-1 prokMSA_id:064391 AY121610 Sulfobacillus sp. NC prokMSA_id:058331 AY140234 Sulfobacillus sp. GG6/1 2.30.7.1.019 OTU 1 seq prokMSA_id:058325 AY140235 Gram-positive iron-oxidizing acidophile Y0010 2.30.7.1.021 OTU 3 seqs prokMSA_id:045590 AF352791 Sulfobacillus sp. MPH6 prokMSA_id:024823 AF352792 Sulfobacillus sp. MPH5 prokMSA_id:058324 AY140236 Gram-positive heterotrophic acidophile Y004 2.30.7.1.022 OTU 1 seq prokMSA_id:058313 AF543505 clone BA8 2.30.7.1.024 OTU 3 seqs prokMSA_id:094867 AB089843 Sulfobacillus disulfidooxidans prokMSA_id:058152 AF544225 clone BW7 prokMSA_id:014332 U34974 Sulfobacillus disulfidooxidans str. SD-11. 2.30.7.1.025 OTU 1 seq prokMSA_id:040294 AJ306701 Sulfobacillus sp. strain ML1/10-19 2.30.7.1.026 OTU 1 seq prokMSA_id:044324 AF254387 Pasteuria sp. S-1 2.30.7.1.027 OTU 1 seq prokMSA_id:044616 AB042055 Alicyclobacillus herbarius 2.30.7.1.028 OTU 1 seq prokMSA_id:048425 AF391986 thermal soil clone YNPFFP5 2.30.7.1.030 OTU 1 seq prokMSA_id:051329 AY040739 Gram-positive iron-oxidizing acidophile SLC66 2.30.7.1.031 OTU 1 seq prokMSA_id:056554 AF523921 clone RCP2-66 2.30.7.1.033 OTU 6 seqs prokMSA_id:094490 AB089844 Sulfobacillus thermosulfidooxidans prokMSA_id:060544 AY079150 Sulfobacillus sibiricus prokMSA_id:058332 AY140233 Sulfobacillus sp. G2 prokMSA_id:014342 U75648 Sulfobacillus thermosulfidooxidans str. BC1. prokMSA_id:014339 X75270 Sulfobacillus sp. str. C-MT1. prokMSA_id:014341 X91080 Sulfobacillus thermosulfidooxidans. 2.30.7.1.034 OTU 3 seqs prokMSA_id:066883 AY096128 clone M1-16 prokMSA_id:066872 AY096139 clone M2-43 prokMSA_id:066839 AY096175 clone F2-46 2.30.7.1.035 OTU 1 seq prokMSA_id:066846 AY096169 clone F2-36 2.30.7.1.036 OTU 1 seq prokMSA_id:066852 AY096162 clone F2-26 2.30.7.1.037 OTU 1 seq prokMSA_id:066867 AY096144 clone F1-11 2.30.7.1.038 OTU 1 seq prokMSA_id:066882 AY096129 clone M1-24 2.30.7.1.039 OTU 1 seq prokMSA_id:068427 AY081940 Pasteuria sp. clone SV36 2.30.7.1.040 OTU 2 seqs prokMSA_id:068434 AY081933 Pasteuria sp. clone SIV7 prokMSA_id:068432 AY081934 Pasteuria sp. clone SIV8 2.30.7.1.041 OTU 11 seqs prokMSA_id:014344 AF077672 Pasteuria penetrans str. P-20; P-100. prokMSA_id:038647 AF375881 Pasteuria penetrans prokMSA_id:068451 AY081911 Pasteuria sp. clone NCf4 prokMSA_id:068452 AY081912 Pasteuria sp. clone NCf8 prokMSA_id:068449 AY081915 Pasteuria sp. clone NCp9 prokMSA_id:068453 AY081916 Pasteuria sp. clone Nf21 prokMSA_id:068454 AY081917 Pasteuria sp. clone Nf3 prokMSA_id:068450 AY081918 Pasteuria sp. clone Nf7 prokMSA_id:068447 AY081919 Pasteuria sp. clone Nf9 prokMSA_id:062227 AY123968 Pasteuria penetrans strain CJ-1 ; and tRNA-Ala complete prokMSA_id:062225 AY123969 Pasteuria penetrans strain 98-35 ; and tRNA-Ala complete 2.30.7.1.042 OTU 2 seqs prokMSA_id:085455 AB042062 Bacillus tusciae prokMSA_id:014331 Z26933 Bacillus tusciae DSM 2912 . 2.30.7.1.043 OTU 1 seq prokMSA_id:014343 U34688 symbiont of Daphnia sp. 2.30.7.1.044 OTU 1 seq prokMSA_id:014347 X60741 Alicyclobacillus acidocaldarius str. TDBrock 115-8 ATCC 43034. 2.30.7.1.045 OTU 1 seq prokMSA_id:014348 Z21979 Sulfobacillus thermosulfidooxidans. 2.30.7.1.046 OTU 1 seq prokMSA_id:078440 AY179184 Sulfobacillus thermosulfidooxidans clone MT-17 2.30.7.1.047 OTU 1 seq prokMSA_id:078942 AY179183 Sulfobacillus thermosulfidooxidans clone MT-16 2.30.7.1.048 OTU 1 seq prokMSA_id:087218 AF515699 Pasteuria goettingianae 2.30.7.1.049 OTU 1 seq prokMSA_id:094521 AY371272 Sulfobacillus sp. 4G 2.30.7.1.050 OTU 1 seq prokMSA_id:094825 AY371274 Alicyclobacillus sp. CLG 2.30.7.1.051 OTU 1 seq prokMSA_id:095171 AB089840 Alicyclobacillus pomorum 2.30.7.1.052 OTU 1 seq prokMSA_id:095977 AY425985 Alicyclobacillus vulcanis 2.30.7.1.999 poor quality 68 seqs prokMSA_id:036620 AB059475 Sulfobacillus sp. C38-3 prokMSA_id:074248 AF031643 Sulfobacillus sp. YTF1 prokMSA_id:069983 AF031644 Sulfobacillus sp. YS5-F1 prokMSA_id:014349 AF031645 Sulfobacillus YTH1 str. YTH1. prokMSA_id:014350 AF031646 Sulfobacillus YTH2 str. YTH2. prokMSA_id:014352 AF050169 Sulfobacillus acidophilus str. NAL DSM 10332 . prokMSA_id:073384 AF137501 Sulfobacillus thermosulfidooxidans prokMSA_id:071417 AF137502 K1 prokMSA_id:070189 AF137503 Sulfobacillus thermosulfidooxidans subsp. asporogenes prokMSA_id:033143 AF465660 DGGE band YNPRH-B1 prokMSA_id:027296 AF465661 DGGE band YNPRH-B2 prokMSA_id:051053 AF465662 DGGE band YNPRH-B3 prokMSA_id:068592 AF486676 clone W6-38-SC1-097 prokMSA_id:068585 AF486685 clone W6-38-SC1-106 prokMSA_id:072521 AH003322 ALV prokMSA_id:073615 AH003323 BC prokMSA_id:039420 AJ298267 SCBP-F14 prokMSA_id:023670 AJ298268 SCBP-F16 prokMSA_id:049128 AJ306702 Alicyclobacillus sp. strain ML1/10-18 prokMSA_id:061304 AY043949 low G+C Gram-positive clone NMW3.57WL prokMSA_id:056282 AY081913 Pasteuria sp. clone NCp2A5 prokMSA_id:068448 AY081914 Pasteuria sp. clone NCp2B5 prokMSA_id:068445 AY081920 Pasteuria sp. clone Np13 prokMSA_id:068443 AY081921 Pasteuria sp. clone Np16 prokMSA_id:068444 AY081922 Pasteuria sp. clone Np17 prokMSA_id:068442 AY081923 Pasteuria sp. clone Np3 prokMSA_id:068441 AY081924 Pasteuria sp. clone Np4 prokMSA_id:068446 AY081925 Pasteuria sp. clone Np6 prokMSA_id:068440 AY081926 Pasteuria sp. clone SI1 prokMSA_id:068439 AY081927 Pasteuria sp. clone SI10 prokMSA_id:068435 AY081928 Pasteuria sp. clone SI6 prokMSA_id:068438 AY081929 Pasteuria sp. clone SII12 prokMSA_id:068437 AY081930 Pasteuria sp. clone SII4 prokMSA_id:068436 AY081931 Pasteuria sp. clone SII8 prokMSA_id:068433 AY081932 Pasteuria sp. clone SIII6 prokMSA_id:068425 AY081935 Pasteuria sp. clone SV24 prokMSA_id:068426 AY081936 Pasteuria sp. clone SV25 prokMSA_id:068430 AY081937 Pasteuria sp. clone SV26 prokMSA_id:068429 AY081938 Pasteuria sp. clone SV27 prokMSA_id:068428 AY081939 Pasteuria sp. clone SV35 prokMSA_id:085822 AY092247 clone BI130 prokMSA_id:066886 AY096123 clone M1-1 prokMSA_id:066876 AY096137 clone M2-17 prokMSA_id:066869 AY096142 clone F1-1 prokMSA_id:066868 AY096143 clone F1-3 prokMSA_id:056247 AY096149 clone F1-42 prokMSA_id:056548 AY096157 clone F2-13 prokMSA_id:066836 AY096177 clone F2-49 prokMSA_id:066076 AY099243 clone MTU-18 prokMSA_id:066075 AY099244 clone MTU-19 prokMSA_id:066077 AY099245 clone MTU-20 prokMSA_id:066074 AY099246 clone MTU-21 prokMSA_id:066073 AY099247 clone MTU-22 prokMSA_id:066072 AY099248 clone MTU-23 prokMSA_id:066071 AY099249 clone MTU-25 prokMSA_id:066070 AY099250 clone MTU-26 prokMSA_id:066069 AY099251 clone MTU-27 prokMSA_id:066067 AY099252 clone MTU-28 prokMSA_id:066068 AY099253 clone MTU-29 prokMSA_id:079029 AY179182 Sulfobacillus thermosulfidooxidans clone MT-13 prokMSA_id:083921 AY262719 Sulfobacillus sp. prokMSA_id:085129 AY266367 Pasteuria penetrans strain PpTH prokMSA_id:014330 M79375 str. ALV. prokMSA_id:014333 M79380 str. BC. prokMSA_id:074650 M79382 BC prokMSA_id:070761 M80290 ALV prokMSA_id:014338 X62177 Alicyclobacillus acidocaldarius str. 104-1A NCIMB 11725 . prokMSA_id:014340 X86775 clone cOS77. 2.30.7.2 B.SCHLEGELII 2 seqs 2.30.7.2.001 OTU 1 seq prokMSA_id:083619 AB042060 Bacillus schlegelii 2.30.7.2.999 poor quality 1 seq prokMSA_id:014353 Z26934 Bacillus schlegelii DSM 2000 . 2.30.7.3 TA.VULGARIS_GROUP 3 seqs 2.30.7.3.999 poor quality 3 seqs prokMSA_id:014356 L16902 Thermoactinomyces dichotomicus str. N1595 NCIMB 10211 . prokMSA_id:014354 M77489 Paenibacillus validus NCIMB 12782 . prokMSA_id:014355 M77491 Thermoactinomyces vulgaris DSM 43016 . 2.30.7.4 PAE.POLYMYXA_GROUP 501 seqs 2.30.7.4.1 PAE.MACQUARIENSIS_SUBGROUP 205 seqs 2.30.7.4.1.001 OTU 1 seq prokMSA_id:018657 AJ272249 Paenibacillus sp. CM1 2.30.7.4.1.002 OTU 6 seqs prokMSA_id:018675 AF346495 Bacillus sp. USC14 complete prokMSA_id:093790 AJ575658 Paenibacillus cineris strain LMG 18439T prokMSA_id:093269 AJ575659 Paenibacillus cineris strain LMG 21976 prokMSA_id:080984 AY208751 Paenibacillus favisporus strain GMP01 prokMSA_id:086920 AY279193 Paenibacillus favisporus strain KNUC56 prokMSA_id:088800 AY308758 Paenibacillus favisporus strain GMP03 2.30.7.4.1.004 OTU 1 seq prokMSA_id:020794 AF446261 firmicute FL08D08 2.30.7.4.1.005 OTU 3 seqs prokMSA_id:048883 AB074746 Low G+C Gram-positive S-Stnd-7D2 prokMSA_id:014383 AJ223987 Paenibacillus sp. str. RS19. prokMSA_id:021436 AJ251193 Paenibacillus sp. TRO4 isolate TRO4 =LMG 19081 2.30.7.4.1.006 OTU 2 seqs prokMSA_id:021862 AB074690 Low G+C Gram-positive D-St1-3 prokMSA_id:051524 AB074739 Low G+C Gram-positive S-St1-6A 2.30.7.4.1.007 OTU 8 seqs prokMSA_id:036679 AF378694 Paenibacillus turicensis clone A1 complete prokMSA_id:022302 AF378695 Paenibacillus turicensis clone A2 complete prokMSA_id:047416 AF378696 Paenibacillus turicensis clone A3a complete prokMSA_id:037147 AF378697 Paenibacillus turicensis clone A3b prokMSA_id:049631 AF378698 Paenibacillus turicensis clone B1 complete prokMSA_id:047969 AF378699 Paenibacillus turicensis clone B2 complete prokMSA_id:046666 AF378700 Paenibacillus turicensis clone B3 complete prokMSA_id:042642 AJ297714 Paenibacillus sp. isolate P15-9 2.30.7.4.1.008 OTU 1 seq prokMSA_id:022513 AF395033 Paenibacillus sp. G296-78 2.30.7.4.1.009 OTU 7 seqs prokMSA_id:077752 AB073188 Paenibacillus lautus prokMSA_id:078298 AB073189 Paenibacillus glucanolyticus prokMSA_id:050444 AF395029 Paenibacillus sp. SB45-2B prokMSA_id:059265 AF540982 Paenibacillus sp. 080702C prokMSA_id:014368 AJ131119 Paenibacillus sp. str. vortex. prokMSA_id:078091 AJ491842 Paenibacillus lautus strain C2 prokMSA_id:083727 AJ509004 Paenibacillus sp. 6495m-C2 isolate 6495m-C2 2.30.7.4.1.010 OTU 1 seq prokMSA_id:027161 X99987 sp. clone 1200-12 2.30.7.4.1.012 OTU 1 seq prokMSA_id:034110 AF465647 Bacillus sp. YNPRH6P-1 2.30.7.4.1.013 OTU 1 seq prokMSA_id:038089 AJ316314 Paenibacillus sp. LMG 20244 strain LMG 20244 2.30.7.4.1.018 OTU 1 seq prokMSA_id:040899 AJ288158 Paenibacillus sp. isolate A-234 2.30.7.4.1.019 OTU 3 seqs prokMSA_id:048149 AJ316013 Paenibacillus stellifer strain IS prokMSA_id:085150 AY099471 Paenibacillus stellifer strain IS-5 prokMSA_id:083547 AY244777 Paenibacillus sp. 2002-56410 2.30.7.4.1.020 OTU 1 seq prokMSA_id:051119 AB046581 Paenibacillus sp. SM-XY60 2.30.7.4.1.021 OTU 1 seq prokMSA_id:066508 AY100579 clone cvf65054 2.30.7.4.1.022 OTU 1 seq prokMSA_id:066793 AF500311 Paenibacillus sp. PA9 2.30.7.4.1.023 OTU 3 seqs prokMSA_id:071618 AJ250319 LMG 18437 strain LMG 18437 prokMSA_id:067648 AJ438302 Paenibacillus sp. R-11600 prokMSA_id:086275 AY266990 Paenibacillus sp. 448-L5 2.30.7.4.1.025 OTU 29 seqs prokMSA_id:040008 AB052966 Bacillus sp. BE1 prokMSA_id:027118 AB052967 Bacillus sp. FE1 prokMSA_id:078079 AB073191 Paenibacillus pabuli prokMSA_id:078185 AB073192 Paenibacillus illinoisensis prokMSA_id:078619 AB094470 Paenibacillus sp. 2216.15.16 prokMSA_id:092017 AB115960 Paenibacillus amylolyticus strain:KT5501 prokMSA_id:019669 AF324200 Paenibacillus sp. V2 prokMSA_id:039149 AF395027 Paenibacillus sp. TB9 prokMSA_id:055541 AJ495806 Paenibacillus sp. p22D prokMSA_id:079208 AJ539165 clone D85 prokMSA_id:079556 AJ539166 clone AF32 prokMSA_id:079579 AJ539173 clone AJ49 prokMSA_id:059198 AY149236 Paenibacillus sp. CC-PN16A prokMSA_id:077327 AY167800 Paenibacillus sp. SAFN-035 prokMSA_id:077304 AY167825 Paenibacillus sp. SAFN-022b prokMSA_id:077398 AY167885 Bacillus pumilus prokMSA_id:084855 AY230772 Bacillus sp. 'Smarlab BioMol-2301285' prokMSA_id:091311 AY336548 Paenibacillus sp. pfB19 prokMSA_id:091391 AY336562 Paenibacillus sp. pfB33 prokMSA_id:091146 AY337581 Paenibacillus sp. CC-SB818D1 prokMSA_id:091692 AY345535 clone LWSR-64 prokMSA_id:091452 AY345554 H17 prokMSA_id:095960 AY378217 Glacial ice ML-B4 prokMSA_id:098103 AY378234 Glacial ice MS-T10-05 prokMSA_id:096930 AY395017 Paenibacillus sp. NAB13 prokMSA_id:096700 AY427832 Paenibacillus xyanilyticum strain XIL14 complete prokMSA_id:072202 D85396 Paenibacillus amylolyticus prokMSA_id:014359 D85396 Paenibacillus amylolyticus NRRL NRS-290 . prokMSA_id:014360 D85397 Paenibacillus illinoisensis str. 14 NRRL NRS-1356 . 2.30.7.4.1.026 OTU 3 seqs prokMSA_id:078345 AB073193 Paenibacillus macquariensis prokMSA_id:090362 AY315170 Glacier FJS42 prokMSA_id:014365 X60625 Paenibacillus macquariensis str. 673 NCTC 10419 . 2.30.7.4.1.027 OTU 6 seqs prokMSA_id:072049 AB043866 Paenibacillus sp. 38-2 prokMSA_id:069797 AB043867 Paenibacillus sp. S39 prokMSA_id:071978 AB043869 Paenibacillus sp. AG430 prokMSA_id:077903 AB073187 Paenibacillus campinasensis prokMSA_id:014367 AF021924 Paenibacillus campinasensis str. 324 KCTC 0364BP . prokMSA_id:085263 AY237109 Paenibacillus sp. A11 2.30.7.4.1.029 OTU 20 seqs prokMSA_id:082473 AB046422 Paenibacillus sp. HSCC 1657 prokMSA_id:078279 AB073364 Paenibacillus borealis prokMSA_id:071723 AF227827 Paenibacillus sp. 61724 prokMSA_id:014375 AJ011321 Paenibacillus sp. str. KM8. prokMSA_id:014376 AJ011322 Paenibacillus sp. str. KK19. prokMSA_id:014377 AJ011323 Paenibacillus sp. str. KK20. prokMSA_id:014378 AJ011324 Paenibacillus sp. str. KN24. prokMSA_id:014379 AJ011325 Paenibacillus sp. str. KN25. prokMSA_id:014380 AJ011326 Paenibacillus sp. str. HM26. prokMSA_id:014381 AJ011327 Paenibacillus sp. str. HM31. prokMSA_id:014384 AJ223990 Paenibacillus sp. str. TOD45. prokMSA_id:028853 AJ297712 Paenibacillus sp. isolate P14-7 prokMSA_id:050840 AJ297713 Paenibacillus sp. isolate P22-9 prokMSA_id:033249 AJ302026 T107 isolate T107 prokMSA_id:084469 AY266989 Paenibacillus sp. 436-1 prokMSA_id:091824 AY345548 H25 prokMSA_id:095527 AY378263 Permafrost DT-IL08 prokMSA_id:097003 AY378264 Permafrost DT-IO20 prokMSA_id:080571 Y13061 B.circulans strain 1-77 prokMSA_id:080385 Y13062 B.circulans strain WSBC 20030 2.30.7.4.1.030 OTU 1 seq prokMSA_id:014382 U68626 clone M45. 2.30.7.4.1.031 OTU 1 seq prokMSA_id:073761 AJ431333 Paenibacillus sp. ikaite c7 isolate ikaite c7 2.30.7.4.1.032 OTU 2 seqs prokMSA_id:074125 AB043868 Paenibacillus sp. 7-5 prokMSA_id:079325 AJ539171 clone AB04 2.30.7.4.1.033 OTU 1 seq prokMSA_id:077280 AJ318909 Earthworm gut MH21 2.30.7.4.1.034 OTU 1 seq prokMSA_id:077386 AY167820 Paenibacillus sp. SAFN-007 2.30.7.4.1.035 OTU 2 seqs prokMSA_id:084099 AF480935 Paenibacillus nematophilus strain NEM1a prokMSA_id:085675 AF480937 Paenibacillus nematophilus strain NEM1b 2.30.7.4.1.036 OTU 1 seq prokMSA_id:084777 AY257868 Paenibacillus lactis strain MB 1871 2.30.7.4.1.037 OTU 3 seqs prokMSA_id:084901 AY230766 Paenibacillus sp. 'Smarlab BioMol-2301065' prokMSA_id:085477 AY259129 Corynebacterium sp. 2301292 prokMSA_id:094821 AY373364 Paenibacillus sp. T7 2.30.7.4.1.038 OTU 1 seq prokMSA_id:088282 AY297964 clone TA55_Ba_4 2.30.7.4.1.039 OTU 1 seq prokMSA_id:094822 AB119649 Paenibacillus abekawaensis strain:MG1 2.30.7.4.1.040 OTU 1 seq prokMSA_id:096549 AY397766 Paenibacillus sp. R-6466 2.30.7.4.1.041 OTU 1 seq prokMSA_id:097369 AY382190 Paenibacillus sp. R-7204 2.30.7.4.1.999 poor quality 89 seqs prokMSA_id:045555 AB054941 Paenibacillus sp. 1084 prokMSA_id:069882 AB054942 Paenibacillus sp. 1102 prokMSA_id:066573 AB072237 Paenibacillus sp. JCM 11186 prokMSA_id:077701 AB073190 Paenibacillus amylolyticus prokMSA_id:078235 AB073194 Paenibacillus chibensis prokMSA_id:016958 AF010125 prokMSA_id:014374 AF039409 Bacillus vortex. prokMSA_id:023689 AF106594 Bacillus vortex prokMSA_id:028135 AF106597 Bacillus tipchiralis prokMSA_id:014370 AF156312 str. NRRLB-14912. prokMSA_id:020673 AF226168 Maize root ZmrIs3 prokMSA_id:042794 AF231420 Humic substances-degrading HS346 prokMSA_id:046018 AF231424 Humic substances-degrading HS412 prokMSA_id:026114 AF231425 Humic substances-degrading HS503 prokMSA_id:022782 AF231427 Humic substances-degrading HS596 prokMSA_id:028140 AF274245 Paenibacillus sp. B3 prokMSA_id:072727 AF286174 IAFBD8 prokMSA_id:074460 AF286177 IAFBG8 prokMSA_id:029800 AF315403 Forest soil AC02 prokMSA_id:033308 AF315405 Forest soil AV02 prokMSA_id:020203 AF315407 Forest soil YC05 prokMSA_id:026817 AF406691 Paenibacillus amylolyticus strain B24 prokMSA_id:067433 AF493310 clone pHS110 prokMSA_id:067431 AF493314 clone pHS114 prokMSA_id:056190 AF493320 clone pHS120 prokMSA_id:065806 AF507526 soil clone S0117 prokMSA_id:065797 AF507538 soil clone S0172 prokMSA_id:050425 AJ011426 isolate B8 prokMSA_id:014363 AJ223991 Bacillus longisporus LMG 13275. prokMSA_id:072632 AJ250317 LMG 18419 strain LMG 18419 prokMSA_id:074627 AJ299571 Bacillus sp. CZ225 isolate CZ225 prokMSA_id:049193 AJ299573 Paenibacillus sp. CZ89 isolate CZ89 prokMSA_id:028094 AJ302334 Bacillus sp. EJP70 isolate EJP70 prokMSA_id:041235 AJ302335 Bacillus sp. EJP59 isolate EJP59 prokMSA_id:075773 AJ318922 Paenibacillus sp. MH44 strain MH44 prokMSA_id:048776 AJ344523 Paenibacillus pabuli strain MBT3 prokMSA_id:080854 AJ437129 clone lb11-01 prokMSA_id:064715 AJ489359 Paenibacillus sp. Lgg15.3 strain Lgg15.3 prokMSA_id:064702 AJ489377 Paenibacillus sp. Lgg20.6 strain Lgg20.6 prokMSA_id:064697 AJ489381 Paenibacillus sp. Lgg20.10 strain Lgg20.10 prokMSA_id:064693 AJ489382 Paenibacillus sp. Lgg20.11 strain Lgg20.11 prokMSA_id:059286 AJ508713 Paenibacillus stellifer strain IS2 prokMSA_id:059298 AJ508714 Paenibacillus stellifer strain IS3 prokMSA_id:059296 AJ508715 Paenibacillus stellifer strain IS4 prokMSA_id:059300 AJ508716 Paenibacillus stellifer strain IS5 prokMSA_id:057420 AJ517852 clone mHK59.3 prokMSA_id:057418 AJ517853 clone mHK59.4 prokMSA_id:057412 AJ517860 clone mOO53.1 prokMSA_id:041862 AY036612 Paenibacillus illinoisensis prokMSA_id:044765 AY039405 Earthworm cast NC11 prokMSA_id:043858 AY039406 Earthworm cast NC12 prokMSA_id:025942 AY039408 Soil NS3 prokMSA_id:061641 AY043549 Paenibacillus sp. 2S2.H5 prokMSA_id:061640 AY043550 Paenibacillus sp. 5S2.A11 prokMSA_id:061608 AY043588 Forest soil 3H2.A12 prokMSA_id:055930 AY043589 Forest soil 5H2.D7 prokMSA_id:061604 AY043590 Forest soil 1H2.E3 prokMSA_id:074728 AY054745 Paenibacillus sp. WB1 prokMSA_id:048356 AY072242 Paenibacillus sp. AV01 prokMSA_id:032363 AY072243 Paenibacillus sp. AV03 prokMSA_id:033455 AY072244 Paenibacillus sp. AV04 prokMSA_id:066879 AY096131 clone M1-45 prokMSA_id:066875 AY096135 clone M2-1 prokMSA_id:063531 AY117605 Paenibacillus sp. DV40 prokMSA_id:063532 AY117606 Paenibacillus sp. DV42 prokMSA_id:069895 AY145669 low G+C Gram-positive CD21G04 prokMSA_id:080898 AY190156 Paenibacillus borealis prokMSA_id:083364 AY242547 Paenibacillus sp. clone A1516S prokMSA_id:085737 AY242548 Paenibacillus sp. clone G1916S prokMSA_id:082598 AY257869 Paenibacillus lactis strain MB 1928 prokMSA_id:087131 AY261406 clone RFLP U46 prokMSA_id:085793 AY275496 Paenibacillus sp. MSB3005 prokMSA_id:089289 AY305001 Paenibacillus sp. HPC251 5' prokMSA_id:089489 AY305002 Paenibacillus sp. HPC251 3' prokMSA_id:096270 AY378214 Glacial ice ML-45 prokMSA_id:098790 AY378253 Permafrost DT-ID25 prokMSA_id:014364 D78470 Paenibacillus glucanolyticus str. S93 DSM 5162 . prokMSA_id:014369 D78472 Paenibacillus lautus CCM 3892. prokMSA_id:014357 D78473 Paenibacillus lautus NRRL NRS-666 . prokMSA_id:014371 D85394 Paenibacillus lautus NRRL B-379. prokMSA_id:014358 D85395 Paenibacillus chibensis NRRL B-142 . prokMSA_id:050135 D85609 Paenibacillus lautus prokMSA_id:014372 D88514 Paenibacillus glucanolyticus DSMZ 5188. prokMSA_id:014373 D88515 Paenibacillus curdlanolyticus IFO 15726. prokMSA_id:033626 U65969 Bacillus sp. spanning the V3-V4 region prokMSA_id:014362 X57305 Paenibacillus macquariensis str. 673 DSM 2 . prokMSA_id:014361 X60606 Paenibacillus amylolyticus NCIMB 8144. prokMSA_id:014366 X60630 Paenibacillus pabuli NCIMB 12781. prokMSA_id:014385 Y11583 Paenibacillus sp. str. Mena 25/4-3 DSM 11456. 2.30.7.4.2 PAE.VALIDUS_SUBGROUP 154 seqs 2.30.7.4.2.001 OTU 3 seqs prokMSA_id:040413 AB021183 Bacillus chitinolyticus prokMSA_id:073805 AF181573 Paenibacillus cf. polymyxa prokMSA_id:092059 AY359637 Paenibacillus polymyxa strain KCTC3717 2.30.7.4.2.002 OTU 5 seqs prokMSA_id:035596 AB021184 Bacillus ehimensis prokMSA_id:042610 AF130254 Paenibacillus koreensis prokMSA_id:063561 AY116664 Bacillus ehimensis strain KCTC3747 prokMSA_id:056275 AY116665 Bacillus ehimensis strain KCTC3748 prokMSA_id:063560 AY116666 Bacillus ehimensis strain KCTC3757 2.30.7.4.2.003 OTU 5 seqs prokMSA_id:077646 AB073197 Paenibacillus thiaminolyticus prokMSA_id:078039 AB073198 Paenibacillus popilliae prokMSA_id:014387 AF071859 Paenibacillus popilliae ATCC 14706 . prokMSA_id:014395 AF071860 Paenibacillus popilliae NRRL B-4081. prokMSA_id:017491 AJ320490 Paenibacillus thiaminolyticus strain DSM 7262T 2.30.7.4.2.004 OTU 1 seq prokMSA_id:017949 AF182807 Paenibacillus velasolus 2.30.7.4.2.005 OTU 1 seq prokMSA_id:018617 AJ252587 Rhizosphere soil isolate RSI-20 2.30.7.4.2.006 OTU 2 seqs prokMSA_id:024845 AB041720 Paenibacillus sp. TB prokMSA_id:050544 AB041721 Paenibacillus sp. TK 2.30.7.4.2.007 OTU 1 seq prokMSA_id:026683 AJ345022 Paenibacillus sp. DSM 34 strain DSM 34 2.30.7.4.2.008 OTU 2 seqs prokMSA_id:026763 AJ345020 Paenibacillus agarexedens strain DSM 1327 prokMSA_id:031440 AJ345024 Paenibacillus sp. DSM 1481 strain DSM 1481 2.30.7.4.2.009 OTU 1 seq prokMSA_id:027231 AJ345021 Paenibacillus sp. DSM 1474 strain DSM 1474 2.30.7.4.2.011 OTU 2 seqs prokMSA_id:078175 AB073200 Paenibacillus alvei prokMSA_id:028165 AJ320491 Paenibacillus alvei strain DSM 29T 2.30.7.4.2.012 OTU 1 seq prokMSA_id:028736 AF290916 Paenibacillus sp. AP-20 2.30.7.4.2.013 OTU 2 seqs prokMSA_id:029848 AJ345018 Paenibacillus sp. DSM 6358 strain DSM 6358 prokMSA_id:037854 AJ345023 Paenibacillus agardevorans strain DSM 1355 2.30.7.4.2.014 OTU 1 seq prokMSA_id:032167 AF445685 firmicute clone SM1E07 2.30.7.4.2.015 OTU 1 seq prokMSA_id:034798 AF237682 Paenibacillus granivorans 2.30.7.4.2.016 OTU 7 seqs prokMSA_id:081558 AB091334 Paenibacillus sp. YK5 prokMSA_id:082278 AB091335 Paenibacillus sp. YK12 prokMSA_id:081627 AB091336 Paenibacillus sp. YK19 prokMSA_id:081244 AB091337 Paenibacillus sp. YK20 prokMSA_id:051767 AF353681 Paenibacillus naphthalenovorans strain PR-N1 prokMSA_id:035842 AF353683 Paenibacillus naphthalenovorans strain PR-N5 prokMSA_id:073273 AF353690 Paenibacillus naphthalenovorans strain PR-N16 2.30.7.4.2.018 OTU 6 seqs prokMSA_id:078225 AB073203 Paenibacillus validus prokMSA_id:037347 AF353676 Paenibacillus validus strain DS-N1 prokMSA_id:071092 AF353697 Paenibacillus validus strain PR-P9 prokMSA_id:027850 D87094 Bacillus sp. prokMSA_id:038639 D87095 Bacillus sp. prokMSA_id:014406 S73541 Paenibacillus validus DSM 3037 . 2.30.7.4.2.019 OTU 1 seq prokMSA_id:056346 AF507708 soil clone S052 2.30.7.4.2.020 OTU 1 seq prokMSA_id:039587 AJ252574 Agricultural soil isolate SI-4 2.30.7.4.2.021 OTU 1 seq prokMSA_id:041543 AY037677 earthworm cast clone C020 2.30.7.4.2.022 OTU 2 seqs prokMSA_id:043033 AJ303338 SCBP-S17 prokMSA_id:073768 AJ303340 2.30.7.4.2.023 OTU 1 seq prokMSA_id:043825 AB042938 Paenibacillus sp. DS-1 2.30.7.4.2.024 OTU 1 seq prokMSA_id:044415 AJ345019 Paenibacillus sp. DSM 1482 strain DSM 1482 2.30.7.4.2.025 OTU 1 seq prokMSA_id:046987 AF164345 Paenibacillus sp. WN9 2.30.7.4.2.026 OTU 1 seq prokMSA_id:048429 AJ229223 from anoxic bulk soil clone BSV79 2.30.7.4.2.027 OTU 4 seqs prokMSA_id:077692 AB073204 Paenibacillus larvae prokMSA_id:077802 AB073205 Paenibacillus larvae prokMSA_id:049027 AY030079 Paenibacillus larvae subsp. larvae prokMSA_id:049008 AY030080 Paenibacillus larvae subsp. pulvifaciens 2.30.7.4.2.028 OTU 1 seq prokMSA_id:050002 AJ229199 from anoxic bulk soil clone BSV44 2.30.7.4.2.029 OTU 1 seq prokMSA_id:054854 AF320074 Paenibacillus sp. NBT 2.30.7.4.2.030 OTU 1 seq prokMSA_id:060619 AF407677 clone Y27 2.30.7.4.2.031 OTU 1 seq prokMSA_id:066468 AY100624 clone cvf77076 2.30.7.4.2.032 OTU 1 seq prokMSA_id:066528 AY100553 clone cvf74069 2.30.7.4.2.033 OTU 3 seqs prokMSA_id:067227 AF492843 Bacillus sp. NK395 prokMSA_id:089996 AY090110 Paenibacillus elgii strain SD17 prokMSA_id:014409 X77792 Bacillus viscosus ATCC 51155. 2.30.7.4.2.034 OTU 2 seqs prokMSA_id:077770 AB073199 Paenibacillus lentimorbus prokMSA_id:014386 AF071861 Paenibacillus lentimorbus ATCC 14707 . 2.30.7.4.2.035 OTU 1 seq prokMSA_id:014390 Y16128 Paenibacillus sp. str. T-168. 2.30.7.4.2.036 OTU 1 seq prokMSA_id:014391 Y16129 Paenibacillus sp. str. C-168. 2.30.7.4.2.037 OTU 1 seq prokMSA_id:014393 Y07608 clone DA113 2.30.7.4.2.038 OTU 2 seqs prokMSA_id:014396 AJ000984 DA116 prokMSA_id:089782 AJ544774 Paenibacillus sp. IDA0415 isolate IDA0415 2.30.7.4.2.039 OTU 2 seqs prokMSA_id:077934 AB073362 Paenibacillus alginolyticus prokMSA_id:014402 D78465 Paenibacillus alginolyticus str. 3 DSM 5050 . 2.30.7.4.2.040 OTU 1 seq prokMSA_id:014404 AF006076 Bacillus edaphicus str. T7 VKPM B-7517 . 2.30.7.4.2.041 OTU 1 seq prokMSA_id:014405 AF006077 Bacillus mucilaginosus str. 1480D VKPM B-7519 . 2.30.7.4.2.042 OTU 1 seq prokMSA_id:014413 AJ005795 Thermobacillus xylanolyticus str. XE. 2.30.7.4.2.043 OTU 1 seq prokMSA_id:070633 AF309814 synthetic wastewater tmbr15-20 complete 2.30.7.4.2.044 OTU 3 seqs prokMSA_id:071863 AF309809 synthetic wastewater tmbr11-29 complete prokMSA_id:071897 AF309811 synthetic wastewater tmbr11-6 complete prokMSA_id:098371 AY382189 Paenibacillus sp. R-7652 2.30.7.4.2.045 OTU 1 seq prokMSA_id:072157 AJ315076 Paenibacillus sp. 19508 2.30.7.4.2.046 OTU 1 seq prokMSA_id:075026 AY154493 earthworm intestine clone wi79 2.30.7.4.2.047 OTU 1 seq prokMSA_id:075253 AY154485 earthworm intestine clone wi21 2.30.7.4.2.048 OTU 1 seq prokMSA_id:084807 AY257871 Paenibacillus sp. MB 2039 2.30.7.4.2.049 OTU 1 seq prokMSA_id:088154 AY283261 Paenibacillus sp. HM1 2.30.7.4.2.050 OTU 1 seq prokMSA_id:088221 AY328609 HOClCi60 2.30.7.4.2.051 OTU 1 seq prokMSA_id:091160 AB089250 Paenibacillus sp. M-2b 2.30.7.4.2.052 OTU 1 seq prokMSA_id:091115 AB089251 Paenibacillus sp. O-3b 2.30.7.4.2.053 OTU 2 seqs prokMSA_id:091644 AB089252 Paenibacillus sp. O-4c prokMSA_id:091340 AB089253 Paenibacillus sp. St-4 2.30.7.4.2.054 OTU 1 seq prokMSA_id:098712 AY397772 Paenibacillus sp. R-6928 2.30.7.4.2.999 poor quality 65 seqs prokMSA_id:031874 AB011783 low G+C gram-positive strain: G11012 prokMSA_id:077726 AB073206 Paenibacillus chondroitinus prokMSA_id:022683 AF010090 prokMSA_id:014392 AF039408 Bacillus tipchiralis. prokMSA_id:017141 AF083576 Amazonian soil M51a prokMSA_id:026754 AF083605 Amazonian soil P46 prokMSA_id:074384 AF097817 clone 49522 prokMSA_id:014410 AF156314 str. NRRLB-14909. prokMSA_id:021940 AF175601 WJGRT-40 prokMSA_id:070577 AF353677 Paenibacillus validus strain DS-N2 prokMSA_id:025367 AF353678 Paenibacillus validus strain DS-N3 prokMSA_id:071693 AF353679 Paenibacillus validus strain JG-N2 prokMSA_id:070932 AF353680 Paenibacillus naphthalenovorans strain SA-N1 prokMSA_id:074071 AF353682 Paenibacillus validus strain PR-N4 prokMSA_id:021615 AF353687 Paenibacillus validus strain PR-N13 prokMSA_id:045985 AF353691 Paenibacillus validus strain PR-N19 prokMSA_id:053788 AF353692 Paenibacillus validus strain PR-N20 prokMSA_id:042142 AF353693 Paenibacillus validus strain PR-N21 prokMSA_id:025688 AF353694 Paenibacillus validus strain PR-N22 prokMSA_id:074208 AF353695 Paenibacillus validus strain PR-P1 prokMSA_id:039339 AF353698 Paenibacillus validus strain PR-P10 prokMSA_id:070210 AF353699 Paenibacillus validus strain PR-P11 prokMSA_id:019318 AF353701 Paenibacillus validus strain PR-P13 prokMSA_id:073243 AF353702 Paenibacillus validus strain PR-B2 prokMSA_id:071096 AF353703 Paenibacillus naphthalenovorans strain PS-N1 prokMSA_id:051842 AF353704 Paenibacillus naphthalenovorans strain PS-N6 prokMSA_id:017026 AF458216 Bacillus ehimensis strain EM prokMSA_id:068586 AF486684 clone W6-38-SC1-105 prokMSA_id:068581 AF486691 clone W6-38-SC1-113 prokMSA_id:066281 AF506061 Paenibacillus sp. LCSAOTU12 prokMSA_id:075041 AF538344 isolate ENV-MO-0012 prokMSA_id:038779 AJ229204 from anoxic bulk soil clone BSV52 prokMSA_id:026310 AJ247102 Riz71 prokMSA_id:042767 AJ288297 Paenibacillus alginolyticus isolate UK4 prokMSA_id:073618 AJ298273 SCBP-D2 prokMSA_id:025220 AJ298274 SCBP-D3 prokMSA_id:037781 AJ298275 SCBP-D4 prokMSA_id:071008 AJ299570 Bacillus sp. CZ181a isolate CZ181a prokMSA_id:072110 AJ299572 Bacillus sp. CZ107b isolate CZ107b prokMSA_id:046642 AJ345017 Paenibacillus sp. DSM 1352 strain DSM 1352 prokMSA_id:031298 AJ409158 dtb17 strain dtb17 prokMSA_id:021487 AY039411 Soil S3D1 prokMSA_id:025413 AY039822 Paenibacillus sp. jshs8 prokMSA_id:089874 AY081186 Paenibacillus elgii strain SD18 prokMSA_id:055460 AY117607 Paenibacillus sp. DV19 prokMSA_id:069451 AY145667 low G+C Gram-positive CD21G01 prokMSA_id:076406 AY154488 earthworm intestine clone wi28 prokMSA_id:086277 AY260765 Paenibacillus larvae subsp. larvae haplotype A prokMSA_id:083354 AY260766 Paenibacillus larvae subsp. larvae haplotype B prokMSA_id:085024 AY260767 Paenibacillus larvae subsp. larvae haplotype C prokMSA_id:090246 AY323194 Gram-positive clone A114-8 prokMSA_id:014408 D78320 Paenibacillus validus DSM 3037 . prokMSA_id:014399 D78475 Paenibacillus thiaminolyticus str. AHU 1392 JCM 8360 . prokMSA_id:014403 D82064 Paenibacillus chondroitinus str. 12 DSM 5051 . prokMSA_id:014388 D88513 Paenibacillus thiaminolyticus JCM 7540. prokMSA_id:014389 D88516 Paenibacillus kobensis IFO 15730. prokMSA_id:014411 D88517 Paenibacillus alginolyticus NRRL NRS-1350. prokMSA_id:014412 D88518 Paenibacillus chondroitinus NRRL B-14420. prokMSA_id:014394 U68623 clone M38. prokMSA_id:042059 U85263 Paenibacillus larvae prokMSA_id:039944 U86605 Paenibacillus larvae strain ATCC 25747 prokMSA_id:025707 U86606 Paenibacillus larvae strain pK4-5 prokMSA_id:014407 X60617 Paenibacillus gordonae str. Q1 ATCC 29948 . prokMSA_id:014400 X60619 Paenibacillus larvae subsp. larvae ATCC 9545 . prokMSA_id:014401 X60636 Paenibacillus larvae subsp. pulvifaciens NCDO 1141. 2.30.7.4.3 PAE.ALVEI_SUBGROUP 25 seqs 2.30.7.4.3.001 OTU 2 seqs prokMSA_id:078004 AB073202 Paenibacillus curdlanolyticus prokMSA_id:014415 D78466 Paenibacillus curdlanolyticus str. YK9 IFO 15724 . 2.30.7.4.3.002 OTU 1 seq prokMSA_id:077737 AB073363 Paenibacillus kobensis 2.30.7.4.3.003 OTU 1 seq prokMSA_id:077745 AB073201 Paenibacillus apiarius 2.30.7.4.3.004 OTU 1 seq prokMSA_id:083751 AY214739 Bacilli clone BB-1-G10 2.30.7.4.3.005 OTU 1 seq prokMSA_id:084264 AY214842 Bacilli clone BB-2-C12F 2.30.7.4.3.999 poor quality 19 seqs prokMSA_id:022478 AF128750 Soil ic121 prokMSA_id:048584 AF392716 clone LBH1 prokMSA_id:037248 AF406674 Potato endoplant B4 strain B4 prokMSA_id:034903 AF406675 Potato endoplant B5 strain B5 prokMSA_id:042650 AF406679 Potato endoplant B9 strain B9 prokMSA_id:048668 AJ295370 Rape rhizosphere cse060 prokMSA_id:048413 AJ295419 Rape rhizosphere tsb007 prokMSA_id:023185 AJ298277 SCBP-D5 prokMSA_id:050246 AJ309986 dtb45 prokMSA_id:043474 AJ320492 Paenibacillus apiarius strain DSM 5581T prokMSA_id:027553 AJ404597 US1 prokMSA_id:021253 AY039402 Earthworm cast C16D2 prokMSA_id:085928 AY214812 Bacilli clone BB-2-E9R prokMSA_id:083513 AY214849 Bacilli clone BB-2-E3F prokMSA_id:014419 D78317 Paenibacillus alvei IFO 3343. prokMSA_id:014414 D78471 Paenibacillus kobensis str. YK205 IFO 15729 . prokMSA_id:014416 U49247 Paenibacillus apiarius NRRL NRS-1438 . prokMSA_id:014417 X57304 Paenibacillus alvei ATCC 6344 . prokMSA_id:014418 X60604 Paenibacillus alvei NCDO 1153. 2.30.7.4.4 PAE.MACERANS_SUBGROUP 12 seqs 2.30.7.4.4.001 OTU 2 seqs prokMSA_id:077819 AB073196 Paenibacillus macerans prokMSA_id:034851 AF306538 Paenibacillus sp. EE17 2.30.7.4.4.002 OTU 2 seqs prokMSA_id:077429 AY167814 Paeniacillus sp. SAFN-016 prokMSA_id:084186 AY230765 Paenibacillus sp. 'Smarlab BioMol-2301032' 2.30.7.4.4.003 OTU 1 seq prokMSA_id:083394 AY230764 Bacillus sp. 'Smarlab BioMol-2301283' 2.30.7.4.4.999 poor quality 7 seqs prokMSA_id:064709 AJ489366 Paenibacillus sp. Lgg15.10 strain Lgg15.10 prokMSA_id:055412 AJ489371 Paenibacillus sp. Lgg15.15 strain Lgg15.15 prokMSA_id:063533 AY117608 Paenibacillus sp. DV29 prokMSA_id:096375 AY397771 Paenibacillus sp. R-7487 prokMSA_id:014421 D78319 Paenibacillus macerans JCM 2500. prokMSA_id:014422 X57306 Paenibacillus macerans ATCC 8244 . prokMSA_id:014420 X60624 Paenibacillus macerans NCDO 1764. 2.30.7.4.5 PAE.AZOTOFIXANS_SUBGROUP 6 seqs 2.30.7.4.5.001 OTU 2 seqs prokMSA_id:046802 AJ251192 Paenibacillus azotofixans strain ATCC 35681T isolate P3L-5 prokMSA_id:035604 AJ251195 Paenibacillus azotofixans strain LMG 14658T isolate P3L-5 2.30.7.4.5.002 OTU 2 seqs prokMSA_id:071025 AB092351 Paenibacillus fujiensis prokMSA_id:014423 X77846 Paenibacillus azotofixans DSM 1735 . 2.30.7.4.5.999 poor quality 2 seqs prokMSA_id:077720 AB073195 Paenibacillus durus prokMSA_id:014424 X60608 Paenibacillus azotofixans str. P3L-5 ATCC 35681 . 2.30.7.4.6 PAE.POLYMYXA_SUBGROUP 99 seqs 2.30.7.4.6.001 OTU 45 seqs prokMSA_id:085775 AB042063 Paenibacillus polymyxa prokMSA_id:027285 AF273740 Paenibacillus sp. 172 prokMSA_id:042808 AF355463 Paenibacillus polymyxa prokMSA_id:020958 AF391123 Paenibacillus kribbensis prokMSA_id:022251 AF391124 Paenibacillus taejonensis prokMSA_id:068756 AF479345 Glacial ice G50-L2 prokMSA_id:064883 AF515611 Paenibacillus polymyxa strain GBR-1 prokMSA_id:014429 AJ011687 Paenibacillus burgondia str. B2. prokMSA_id:014431 AJ223988 Paenibacillus polymyxa str. PMD230. prokMSA_id:014432 AJ223989 Paenibacillus polymyxa str. CF43. prokMSA_id:016360 AJ271157 Paenibacillus jamilae strain CECT 5266 prokMSA_id:058395 AJ297715 Paenibacillus sp. isolate P51-3 prokMSA_id:077277 AJ318910 Earthworm gut MH72 prokMSA_id:076931 AJ318912 Paenibacillus burgondia strain MH14 prokMSA_id:038958 AJ320493 Paenibacillus polymyxa strain DSM 36T prokMSA_id:044105 AJ320494 Paenibacillus peoriae strain DSM 8320T prokMSA_id:093525 AJ581928 Paenibacillus peoriae strain 1P1-2 prokMSA_id:087679 AY292989 Paenibacillus sp. Cp_S316 prokMSA_id:090699 AY302187 Paenibacillus polymyxa BS04 prokMSA_id:089987 AY302439 Paenibacillus polymyxa strain WY110 prokMSA_id:092649 AY359614 Paenibacillus polymyxa strain GBR-2 prokMSA_id:092572 AY359615 Paenibacillus polymyxa strain GBR-27 prokMSA_id:092293 AY359616 Paenibacillus polymyxa strain GBR-180 prokMSA_id:092521 AY359617 Paenibacillus polymyxa strain GBR-192 prokMSA_id:093130 AY359618 Paenibacillus polymyxa strain GBR-325 prokMSA_id:092100 AY359619 Paenibacillus polymyxa strain GBR-11 prokMSA_id:092405 AY359620 Paenibacillus polymyxa strain GBR-447 prokMSA_id:092110 AY359621 Paenibacillus polymyxa strain GBR-462 prokMSA_id:092866 AY359622 Paenibacillus polymyxa strain GBR-464 prokMSA_id:093032 AY359623 Paenibacillus polymyxa strain GBR-465 prokMSA_id:092846 AY359624 Paenibacillus polymyxa strain GBR-472 prokMSA_id:092624 AY359625 Paenibacillus polymyxa strain GBR-477 prokMSA_id:092370 AY359626 Paenibacillus polymyxa strain GBR-478 prokMSA_id:092246 AY359627 Paenibacillus polymyxa strain GBR-485 prokMSA_id:092097 AY359628 Paenibacillus polymyxa strain GBR-501 prokMSA_id:092170 AY359629 Paenibacillus polymyxa strain GBR-515 prokMSA_id:092852 AY359630 Paenibacillus polymyxa strain GBR-540 prokMSA_id:092191 AY359631 Paenibacillus polymyxa strain GBR-602 prokMSA_id:093129 AY359632 Paenibacillus polymyxa strain GBR-603 prokMSA_id:092641 AY359633 Paenibacillus polymyxa strain KCTC1663 prokMSA_id:092257 AY359634 Paenibacillus polymyxa strain KCTC1761 prokMSA_id:092583 AY359635 Paenibacillus polymyxa strain KCTC3554 prokMSA_id:092844 AY359636 Paenibacillus polymyxa strain KCTC3627 prokMSA_id:094987 AY373363 Paenibacillus sp. g2 prokMSA_id:014428 D16276 Paenibacillus polymyxa IAM 13419 . 2.30.7.4.6.002 OTU 3 seqs prokMSA_id:016553 AF227835 str. 31295 prokMSA_id:028024 AF227859 str. 31293 prokMSA_id:096844 AY397765 Paenibacillus sp. R-6507 2.30.7.4.6.003 OTU 1 seq prokMSA_id:022087 AJ011424 isolate B6 2.30.7.4.6.004 OTU 1 seq prokMSA_id:055992 AY032949 Paenibacillus taejonensis 2.30.7.4.6.005 OTU 1 seq prokMSA_id:027158 AF433165 Paenibacillus hongkongensis 2.30.7.4.6.006 OTU 1 seq prokMSA_id:034044 AF312217 Pietermaritzburg Y14-3 2.30.7.4.6.007 OTU 1 seq prokMSA_id:038098 AF395028 Paenibacillus sp. C15 2.30.7.4.6.008 OTU 1 seq prokMSA_id:039053 AF312215 Pietermaritzburg Y14-1 2.30.7.4.6.009 OTU 2 seqs prokMSA_id:063836 AF454298 Bacillus sp. clone ML1228J-1 prokMSA_id:062679 AF507883 low G+C Gram-positive clone ML635J-5 2.30.7.4.6.010 OTU 1 seq prokMSA_id:062685 AF507877 low G+C Gram-positive clone ML635J-45 2.30.7.4.6.011 OTU 1 seq prokMSA_id:066841 AY096173 clone F2-42 2.30.7.4.6.012 OTU 1 seq prokMSA_id:066845 AY096168 clone F2-34 2.30.7.4.6.013 OTU 1 seq prokMSA_id:014430 AB024598 Bacillus GL1 str. GL1. 2.30.7.4.6.014 OTU 1 seq prokMSA_id:073496 AJ316315 Paenibacillus sp. LMG 20245 strain LMG 20245 2.30.7.4.6.015 OTU 1 seq prokMSA_id:083633 AY214853 Bacilli clone BB-2-B10F 2.30.7.4.6.016 OTU 1 seq prokMSA_id:084499 AF480934 Paenibacillus sp. NEM3 2.30.7.4.6.999 poor quality 36 seqs prokMSA_id:078234 AB073186 Paenibacillus peoriae prokMSA_id:083875 AB107162 Firmicutes K-2063 parital prokMSA_id:020097 AF210814 Soil TAFB-naph-1 prokMSA_id:054126 AF245034 Paenibacillus 5D2 prokMSA_id:030742 AF273741 Paenibacillus sp. 115 prokMSA_id:032225 AF393479 Paenibacillus sp. oral clone BZ008 prokMSA_id:060269 AH011809 Paenibacillus polymyxa 5' and 3' prokMSA_id:018241 AJ311396 maize rhizosphere c10_23 prokMSA_id:046140 AJ311406 maize rhizosphere c5_23 prokMSA_id:016852 AJ311407 maize rhizosphere c6_23 prokMSA_id:072203 AJ311408 maize rhizosphere c7/c8_23 prokMSA_id:019273 AJ311409 maize rhizosphere c9_23 prokMSA_id:037598 AJ311419 maize rhizosphere c5_45 prokMSA_id:026436 AJ311431 maize rhizosphere c18-2_68 prokMSA_id:047169 AJ311436 maize rhizosphere c4_68 prokMSA_id:022806 AJ311437 maize rhizosphere c5_68 prokMSA_id:023429 AJ311439 maize rhizosphere c6_68 prokMSA_id:042312 AJ311440 maize rhizosphere c7_68 prokMSA_id:076422 AJ318916 Paenibacillus sp. AG5 strain AG5 prokMSA_id:064708 AJ489368 Paenibacillus sp. Lgg15.12 strain Lgg15.12 prokMSA_id:064700 AJ489374 Paenibacillus sp. Lgg20.3 strain Lgg20.3 prokMSA_id:074158 AX537361 4 from Patent EP1241247 prokMSA_id:084766 AY092236 clone BI113 prokMSA_id:060265 AY135393 Paenibacillus polymyxa 5' prokMSA_id:060266 AY135394 Paenibacillus polymyxa 3' prokMSA_id:085745 AY242740 soil clone TcA4 prokMSA_id:014425 D78318 Paenibacillus azotofixans NRRL B-14372. prokMSA_id:014426 D78476 Paenibacillus peoriae str. 11.B.9 IFO 15541 . prokMSA_id:050386 U60654 Paenibacillus polymyxa prokMSA_id:022258 U60655 Paenibacillus polymyxa prokMSA_id:021562 U60656 Paenibacillus polymyxa prokMSA_id:032324 U60657 Paenibacillus polymyxa prokMSA_id:047311 U60658 Paenibacillus polymyxa prokMSA_id:032405 U60659 Paenibacillus polymyxa prokMSA_id:014427 X57308 Paenibacillus polymyxa DSM 36 . prokMSA_id:014433 X60632 Paenibacillus polymyxa NCDO 1774. 2.30.7.5 BB.BREVIS_GROUP 102 seqs 2.30.7.5.001 OTU 3 seqs prokMSA_id:020029 AY062020 Brevibacillus sp. SL8 prokMSA_id:082008 AY196006 Brevibacillus thermoruber prokMSA_id:014435 Z26921 Brevibacillus thermoruber str. BT2 DSM 7064 . 2.30.7.5.005 OTU 1 seq prokMSA_id:022135 AF145807 Metal-contaminated soil clone K20-03 2.30.7.5.007 OTU 31 seqs prokMSA_id:044838 AB039334 Brevibacillus agri strain:M1-5 prokMSA_id:027343 AB048253 Brevibacillus agri complete strain:MC-C1 prokMSA_id:048767 AB066340 Brevibacterium sp. BN53-1 prokMSA_id:027474 AB074677 Low G+C Gram-positive D-N1-3C prokMSA_id:060320 AB090803 Brevibacillus sp. YT-658 prokMSA_id:055876 AB090804 Brevibacillus sp. EK-287 prokMSA_id:079457 AB101593 Brevibacillus brevis prokMSA_id:091137 AB116134 Brevibacillus borstelensis strain:M63 prokMSA_id:020842 AF227853 Brevibacillus sp. 96452 prokMSA_id:025731 AF228763 Brevibacillus sp. Riau prokMSA_id:071869 AF252328 Brevibacillus sp. HC6 prokMSA_id:063084 AF378230 Brevibacillus borstelensis strain LMG 15536 prokMSA_id:072419 AF378231 Brevibacillus invocatus strain LMG 18167 prokMSA_id:072424 AF378233 Brevibacillus agri strain LMG 18172 prokMSA_id:070344 AF378234 Brevibacillus formosus strain LMG 16101 prokMSA_id:034619 AF408264 Brevibacillus sp. clone KL-13-4-4 prokMSA_id:038327 AF408265 Brevibacillus sp. clone KL-13-4-10 prokMSA_id:038999 AJ313027 Brevibacillus sp. MN 47.2a isolate MN 47.2a prokMSA_id:082855 AJ438305 Brevibacillus sp. R-12868 prokMSA_id:089836 AY319301 Brevibacillus agri strain NCHU1002 complete prokMSA_id:094939 AY373322 Brevibacillus borstelensis strain R-7201 prokMSA_id:097889 AY397767 Brevibacillus sp. R-6469 prokMSA_id:097426 AY397774 Brevibacillus sp. R-7745 prokMSA_id:098725 AY422983 Brevibacillus sp. R-6774 prokMSA_id:014451 D78454 Brevibacillus agri NRRL NRS-1219 . prokMSA_id:014441 D78456 Brevibacillus borstelensis NRRL NRS-818 . prokMSA_id:014449 D78459 Brevibacillus choshinensis str. HPD52. prokMSA_id:014443 D78460 Brevibacillus formosus NRRL NRS-863 . prokMSA_id:014442 D78463 Brevibacillus parabrevis IFO 12334 . prokMSA_id:014444 D78464 Brevibacillus reuszeri NRRL NRS-1206 . prokMSA_id:014436 U65892 Brevibacillus agri NRRL NRS-1689. 2.30.7.5.008 OTU 1 seq prokMSA_id:030464 AF269000 SBR2013 2.30.7.5.009 OTU 1 seq prokMSA_id:032738 AF268996 SBR1071 2.30.7.5.010 OTU 1 seq prokMSA_id:040165 AB048256 Brevibacillus sp. MC-Z complete 2.30.7.5.011 OTU 1 seq prokMSA_id:066523 AY100559 clone cvf76027 2.30.7.5.012 OTU 1 seq prokMSA_id:066539 AY100542 clone cvf61008 2.30.7.5.013 OTU 1 seq prokMSA_id:067396 AJ457160 Brevibacillus sp. AV-Pb 2.30.7.5.014 OTU 1 seq prokMSA_id:014438 AF145827 clone K20-27. 2.30.7.5.015 OTU 2 seqs prokMSA_id:091573 AY345359 Ph21 prokMSA_id:014445 D16271 Brevibacillus laterosporus IAM 12455 . 2.30.7.5.016 OTU 1 seq prokMSA_id:070010 AF269006 TM7LH20 2.30.7.5.017 OTU 1 seq prokMSA_id:071833 AF309812 synthetic wastewater tmbr11-7 complete 2.30.7.5.018 OTU 1 seq prokMSA_id:077296 AY072721 Brevibacillus sp. SE004 2.30.7.5.019 OTU 1 seq prokMSA_id:081579 AB100464 clone: Rs-L40 2.30.7.5.020 OTU 1 seq prokMSA_id:083397 AY274120 clone D110 2.30.7.5.021 OTU 1 seq prokMSA_id:091082 AY345499 clone W4-B31 2.30.7.5.022 OTU 1 seq prokMSA_id:091512 AY345503 clone W4-B20 2.30.7.5.023 OTU 1 seq prokMSA_id:095337 AY225653 candidate division TM7 clone AT-s2-18 2.30.7.5.024 OTU 1 seq prokMSA_id:095847 AY397773 Brevibacillus sp. R-7152 2.30.7.5.999 poor quality 49 seqs prokMSA_id:034711 AB013436 Brevibacillus sp. YB13 prokMSA_id:033533 AB013437 Brevibacillus sp. YB14 prokMSA_id:050756 AF078343 Grassland soil clone sl1_204 prokMSA_id:039253 AF083593 Amazonian soil P24a prokMSA_id:018080 AF083594 Amazonian soil P24bc prokMSA_id:045145 AF106606 Brevibacillus brevis prokMSA_id:031931 AF128755 Soil is019 prokMSA_id:019305 AF145856 Metal-contaminated soil clone K20-64 prokMSA_id:034680 AF242893 Brevibacillus borstelensis 5' prokMSA_id:022356 AF242894 Brevibacillus borstelensis 3' prokMSA_id:074372 AF378232 Brevibacillus invocatus strain LMG 18962 prokMSA_id:017838 AF424048 Brevibacillus brevis strain 50 prokMSA_id:032950 AF428593 clone CRD99-15 prokMSA_id:036698 AF460912 Marine SIMO-IS197 prokMSA_id:062024 AF523328 clone P4-29 prokMSA_id:074640 AF530274 Brevibacillus sp. S5-11 prokMSA_id:073217 AF530275 Brevibacillus sp. S5-16 prokMSA_id:029663 AH010495 Brevibacillus borstelensis and genes prokMSA_id:027753 AJ001243 Bacillus sp. 5' end prokMSA_id:040679 AJ001244 Bacillus sp. 3' end prokMSA_id:073767 AJ299567 Brevibacillus brevis isolate CZ207-1 prokMSA_id:075383 AJ428139 isolate band mw-b3 prokMSA_id:076571 AJ428141 isolate band mw-b5 prokMSA_id:067650 AJ438293 Brevibacillus sp. R-1223 prokMSA_id:026887 AY037607 soil clone S084 prokMSA_id:047929 AY037707 earthworm cast clone C057 prokMSA_id:030639 AY037738 earthworm cast clone C135 prokMSA_id:044408 AY039409 Soil S107D1 prokMSA_id:065560 AY095399 yard-trimming-compost clone S-28 prokMSA_id:065546 AY095419 yard-trimming-compost clone S-52 prokMSA_id:066874 AY096136 clone M2-6 prokMSA_id:077212 AY150930 clone uv17 prokMSA_id:075208 AY150937 clone uv38a_1 prokMSA_id:074930 AY150941 clone uv46 prokMSA_id:079508 AY186820 clone uv17 prokMSA_id:079382 AY186827 clone uv38a1 prokMSA_id:079103 AY186831 clone uv46 prokMSA_id:095368 AY378182 Extreme arid zone HX-IE07 prokMSA_id:097863 AY387586 Brevibacillus sp. B26 prokMSA_id:014450 D78457 Brevibacillus brevis JCM 2503 . prokMSA_id:014452 D78458 Brevibacillus centrosporus NRRL NRS-664 . prokMSA_id:014447 D78461 Brevibacillus laterosporus JCM 2496 . prokMSA_id:014453 M10111 Brevibacillus brevis ATCC 8185. prokMSA_id:014440 NONE Rhizobium sp. str. H4.Rhizobium isolate. prokMSA_id:014434 NONE Rhizobium sp. str. TM1.Rhizobium isolate. prokMSA_id:014437 X57307 Brevibacillus laterosporus ATCC 64 . prokMSA_id:014439 X60612 Brevibacillus brevis NCIMB 9372 . prokMSA_id:014448 X60620 Brevibacillus laterosporus NCDO 1763 . prokMSA_id:014446 X84503 unnamed organism. 2.30.7.6 AB.ANEURINILYTICUS_GROUP 37 seqs 2.30.7.6.001 OTU 1 seq prokMSA_id:018083 AF469397 clone 33-PA12B00 2.30.7.6.002 OTU 8 seqs prokMSA_id:014464 AF089892 Thermoactinomyces vulgaris ATCC 15734. prokMSA_id:022272 AF138737 Thermoactinomyces sacchari KCTC 9790 complete prokMSA_id:025830 AF138738 Thermoactinomyces thalpophilus KCTC 9789 complete prokMSA_id:038173 AF367589 Thermoactinomyces yunnanensis prokMSA_id:033006 AJ251776 Thermoactinomyces putidus prokMSA_id:070190 AJ251777 Thermoactinomyces thalpophilus prokMSA_id:033306 AJ251779 Thermoactinomyces sacchari prokMSA_id:063749 AY114169 Thermoactinomyces sacchari strain RVH210302A 2.30.7.6.003 OTU 1 seq prokMSA_id:022975 AF138735 Thermoactinomyces peptonophilus KCTC 9740 complete 2.30.7.6.005 OTU 4 seqs prokMSA_id:038737 AF252327 Bacillus sp. HC5 prokMSA_id:071633 AF309816 synthetic wastewater tmbr15-26 complete prokMSA_id:014460 X94196 Aneurinibacillus thermoaerophilus str. L420-91 DSM 10154 . prokMSA_id:014461 X94197 Aneurinibacillus thermoaerophilus DSM 10155. 2.30.7.6.006 OTU 3 seqs prokMSA_id:014463 AF089891 Thermoactinomyces vulgaris ATCC 43649. prokMSA_id:043719 AF367588 Thermoactinomyces albus prokMSA_id:063755 AY114167 Thermoactinomyces vulgaris strain RVH210302 2.30.7.6.007 OTU 1 seq prokMSA_id:051632 AF369870 Aneurinibacillus sp. DB4 2.30.7.6.008 OTU 1 seq prokMSA_id:066554 AY100527 clone cvf65109 2.30.7.6.009 OTU 5 seqs prokMSA_id:014457 D78455 Aneurinibacillus aneurinilyticus ATCC 12856 . prokMSA_id:014454 D78462 Aneurinibacillus migulanus ATCC 9999 . prokMSA_id:014455 X77789 Bacillus acidovorans ATCC 51159. prokMSA_id:014458 X94194 Aneurinibacillus aneurinilyticus DSM 5562 . prokMSA_id:014456 X94195 Aneurinibacillus migulanus DSM 2895 . 2.30.7.6.010 OTU 1 seq prokMSA_id:014462 AF089890 Thermoactinomyces sacchari ATCC 27349. 2.30.7.6.011 OTU 2 seqs prokMSA_id:014465 X77840 Oxalophagus oxalicus str. Alt Ox1 DSM 5503 . prokMSA_id:014466 Y14581 Oxalophagus oxalicus str. Alt Ox1 DSM 5503 . 2.30.7.6.013 OTU 4 seqs prokMSA_id:033013 AJ011364 clone C5 OTU G prokMSA_id:014468 Y14578 Ammoniphilus oxalaticus str. RAOx1. prokMSA_id:014469 Y14579 Ammoniphilus oxalaticus str. RAOx-FF. prokMSA_id:014467 Y14580 Ammoniphilus oxalivorans str. RAOx-FS DSM 11537 . 2.30.7.6.014 OTU 1 seq prokMSA_id:097575 AJ575982 Gram-positive clone T6-Ph07-819 2.30.7.6.999 poor quality 5 seqs prokMSA_id:032973 AF146261 SCALE-9 prokMSA_id:020705 AF181922 clone 14d/8 prokMSA_id:072629 AF309813 synthetic wastewater tmbr15-12 complete prokMSA_id:014470 D63598 clone UN116. prokMSA_id:014459 X60645 Aneurinibacillus aneurinilyticus NCIMB 10056. 2.30.7.7 B.HORTI_SUBGROUP 4 seqs 2.30.7.7.001 OTU 2 seqs prokMSA_id:014472 AF078813 Bacillus 5215 str. 5215. prokMSA_id:014471 D87035 Bacillus horti str. K13 JCM 9943 . 2.30.7.7.002 OTU 1 seq prokMSA_id:014473 AB002644 str. HTA454. 2.30.7.7.003 OTU 1 seq prokMSA_id:077144 AY147274 clone THM-4 2.30.7.8 MRC.HALOPHILUS_SUBGROUP 5 seqs 2.30.7.8.001 OTU 1 seq prokMSA_id:014474 X62171 Marinococcus halophilus NCIMB 2178 . 2.30.7.8.002 OTU 2 seqs prokMSA_id:082109 AY196980 Marinococcus sp. 3019cM prokMSA_id:014475 X90835 Marinococcus halophilus DSM 20408 . 2.30.7.8.003 OTU 1 seq prokMSA_id:014476 AB015022 str. MBIC3303. 2.30.7.8.999 poor quality 1 seq prokMSA_id:042754 AF181915 clone 5d/12 2.30.7.9 SPOROLACTOBACILLUS_GROUP 225 seqs 2.30.7.9.1 SPL.INULINUS_SUBGROUP 18 seqs 2.30.7.9.1.001 OTU 4 seqs prokMSA_id:079523 AB101595 Sporolactobacillus inulinus prokMSA_id:014477 D16283 Sporolactobacillus inulinus JCM 6014 . prokMSA_id:014490 D16284 Sporolactobacillus inulinus NRIC 1134. prokMSA_id:014489 D16288 Sporolactobacillus racemicus str. M-86 IAM 12384. 2.30.7.9.1.002 OTU 10 seqs prokMSA_id:014483 D16269 Bacillus laevolacticus str. M-1 IAM 12322. prokMSA_id:014486 D16270 Bacillus laevolacticus str. M-8 IAM 12321 . prokMSA_id:014480 D16274 Bacillus myxolacticus str. M-105 IAM 12326. prokMSA_id:014488 D16278 Bacillus laevolacticus str. M-14 IAM 12318. prokMSA_id:014478 D16285 Sporolactobacillus laevis str. M-103 IAM 12387. prokMSA_id:014482 D16286 Sporolactobacillus laevis str. M-114 IAM 12388. prokMSA_id:014484 D16287 Sporolactobacillus laevis str. M-18 IAM 14263. prokMSA_id:014479 D16289 Sporolactobacillus racemicus str. M-116 IAM 14264. prokMSA_id:014491 D16290 Sporolactobacillus racemicus str. M-16 IAM 12395. prokMSA_id:014481 D16291 Sporolactobacillus racemicus str. M-17 IAM 12396. 2.30.7.9.1.999 poor quality 4 seqs prokMSA_id:064071 AB087291 clone:CF11 prokMSA_id:030056 AY029594 Clostridium sp. clone HPG-S-1 prokMSA_id:014485 M58838 Sporolactobacillus inulinus ATCC 15538 . prokMSA_id:014487 X62179 Bacillus laevolacticus str. M-14 NCIMB 10274. 2.30.7.9.2 B.RACEMILACTICUS 7 seqs 2.30.7.9.2.001 OTU 1 seq prokMSA_id:014492 D16279 Bacillus racemilacticus str. M-5 IAM 12319. 2.30.7.9.2.002 OTU 1 seq prokMSA_id:091416 AJ535733 Bacillus sp. US149 strain US149 2.30.7.9.2.999 poor quality 5 seqs prokMSA_id:048629 AF395310 isopod gut clone RKPsA prokMSA_id:047934 AF395315 isopod gut clone RKPsG prokMSA_id:038117 AF395316 isopod gut clone RKPsAV prokMSA_id:038054 AF395319 isopod gut clone RKPsAA prokMSA_id:058565 AF544055 low G+C Gram-positive isolate DGGE gel band M5-3 2.30.7.9.3 B.ALCALOPHILUS_SUBGROUP 200 seqs 2.30.7.9.3.001 OTU 23 seqs prokMSA_id:022363 AB043853 Bacillus sp. O-4 prokMSA_id:069971 AB043855 Bacillus sp. IC prokMSA_id:073573 AB043859 Bacillus sp. H167 prokMSA_id:014512 AF142576 Bacillus Enterogermina str. Enterogermina. prokMSA_id:016342 AF172603 Bacillus clausii prokMSA_id:018096 AF172997 Bacillus clausii prokMSA_id:042534 AF173168 Bacillus clausii prokMSA_id:071598 AF329474 Bacillus clausii strain LMG 19610 prokMSA_id:024551 AF329475 Bacillus clausii strain LMG 19634 prokMSA_id:028811 AJ277904 Bacillus alcalophilus strain Domuvar prokMSA_id:049611 AJ297491 Bacillus clausii strain O/C Enterogermina prokMSA_id:042836 AJ297492 Bacillus clausii strain N/R Enterogermina prokMSA_id:037901 AJ297493 Bacillus clausii strain T Enterogermina prokMSA_id:021446 AJ297494 Bacillus clausii strain SIN Enterogermina prokMSA_id:042958 AJ297495 Bacillus clausii strain O/C84 Enterogermina prokMSA_id:042999 AJ297496 Bacillus clausii strain N/R84 Enterogermina prokMSA_id:046525 AJ297497 Bacillus clausii strain T84 Enterogermina prokMSA_id:034505 AJ297498 Bacillus clausii strain SIN84 Enterogermina prokMSA_id:017073 AY066000 Bacillus clausii strain za-w-3 prokMSA_id:055141 AY152839 Bacillus clausii strain GMBAE 42 complete prokMSA_id:083525 AY192145 Bacillus clausii strain I-58 prokMSA_id:084830 AY241449 Bacillus sp. UST020129-009 prokMSA_id:014511 X76440 Bacillus sp. DSM 8716. 2.30.7.9.3.002 OTU 1 seq prokMSA_id:016416 X92163 sp. Lake Natron isolate 103NT4 2.30.7.9.3.003 OTU 1 seq prokMSA_id:016669 AF199461 Bacillus sp. YUA25 2.30.7.9.3.004 OTU 2 seqs prokMSA_id:029235 AB044748 Bacillus sp. KSM-K38 complete prokMSA_id:016790 AF275701 Hailaer soda lake F23 2.30.7.9.3.005 OTU 1 seq prokMSA_id:016919 AY032601 Bacillus sp. JMM-4 2.30.7.9.3.006 OTU 29 seqs prokMSA_id:014495 AB002661 Bacillus sp. str. C-125. prokMSA_id:054430 AB013373 Bacillus halodurans C-125 23S 5S and genes and tRNA-Ala Arg Gly Leu Lys Pro Thr and Val genes region prokMSA_id:040528 AB021187 Bacillus halodurans prokMSA_id:036285 AB027713 Bacillus halodurans strain:AH-101 prokMSA_id:054543 AB031209 Bacillus halodurans orf1 orf2 - -23S -5S yaaC guaB and complete cds prokMSA_id:053545 AB031210 Bacillus halodurans dnaX yaaK recR yaaL bofA rrnB- rrnB-23S rrnB-5S orf1 csfB genes and complete cds prokMSA_id:053774 AB031211 Bacillus halodurans lysS rrnC- trn-Ile trn-Ala rrnC-23S rrnC-5S trnJ-Val trnJ-Thr trnJ-Lys trnJ-Leu1 trnJ-Gly trnJ-Leu2 trnJ-Arg trnJ-Pro trnJ-Ala rrnD- rrnD-23S yacH ykfC orf1 ctsR yacI genes and complete cds prokMSA_id:053960 AB031212 Bacillus halodurans orf1 orf2 kbaA ybaN rrnE- rrnE-23S rrnE-5S trn-Asn trn-Thr rrnE-23S rrnE-5S trn-Asn trn-Thr tnpA genes and complete cds prokMSA_id:054477 AB031213 Bacillus halodurans ydcI ydcK trn-Asn trn-Ser trn-Glu trn-Val trn-Asp trn-leu1 trn-leu2 trn-Arg trn-Gly trn-lle rrnF- rrnF-23S trnF-5S ykfC genes and complete cds prokMSA_id:054652 AB031214 Bacillus halodurans yvgQ rrnG- trn-lle trn-Ala rrnG-23S trn-5S ykfC nasA genes and complete cds prokMSA_id:053117 AB031215 Bacillus halodurans ygaG orf ygxA rrnH- rrnH-23S rrnH-5S trnD-Asn trnD-Ser trnD-Glu trnD-Val trnD-Met trnD-Asp trnD-Phe trnD-Thr trnD-Tyr trnD-His trnD-Gln trnD-Gly TnpA genes complete and cds prokMSA_id:036945 AB043844 Bacillus sp. 202-1 prokMSA_id:038836 AB043847 Bacillus sp. C-3 prokMSA_id:022552 AB043856 Bacillus sp. A-59 prokMSA_id:052107 AB043971 Bacillus halodurans complete prokMSA_id:021800 AB047684 Bacillus sp. GTC854 prokMSA_id:017467 AB047685 Bacillus sp. GTC855 prokMSA_id:094116 AF542086 Bacillus halodurans isolate 34 prokMSA_id:094086 AF542087 Bacillus halodurans isolate 314 prokMSA_id:037869 AJ302709 Bacillus halodurans strain DSM 497T prokMSA_id:046768 AP001507 Bacillus halodurans genomic section 1/14 prokMSA_id:071735 AP001508 Bacillus halodurans genomic section 2/14 prokMSA_id:028745 AP001509 Bacillus halodurans genomic section 3/14 prokMSA_id:069133 AP001510 Bacillus halodurans genomic section 4/14 prokMSA_id:042445 AY017348 Bacillus halodurans prokMSA_id:059207 AY144582 Bacillus halodurans strain SES4 prokMSA_id:088639 AY291122 Bacillus sp. YNUCCTCRQ1 prokMSA_id:054054 NC_002570 Bacillus halodurans complete genome prokMSA_id:014493 X76442 Bacillus sp. DSM 8718. 2.30.7.9.3.007 OTU 1 seq prokMSA_id:017639 AF275706 Hailaer soda lake T1 2.30.7.9.3.008 OTU 2 seqs prokMSA_id:018610 AF218243 Bacillus sp. prokMSA_id:021885 AF227837 str. 47083 2.30.7.9.3.010 OTU 8 seqs prokMSA_id:020318 AB029256 Bacillus pseudofirmus complete prokMSA_id:047686 AB043842 Bacillus sp. 8-1 prokMSA_id:038275 AB043845 Bacillus sp. 27-1 prokMSA_id:046785 AB043857 Bacillus sp. 2b-2 prokMSA_id:025923 AF326122 Bacillus sp. XE22-4-1 prokMSA_id:047837 AF406790 Bacillus pseudofirmus strain FTU prokMSA_id:014496 X76439 Bacillus sp. DSM 8715. prokMSA_id:024084 X92158 sp. Lake Bogoria isolate 66B4 2.30.7.9.3.011 OTU 1 seq prokMSA_id:020396 AF349724 Gram-positive MOL361 complete 2.30.7.9.3.012 OTU 1 seq prokMSA_id:023244 AB043852 Bacillus sp. N-4 2.30.7.9.3.013 OTU 1 seq prokMSA_id:023337 AF275707 Hailaer soda lake T10 2.30.7.9.3.014 OTU 1 seq prokMSA_id:023919 X92168 sp. Lake Nakuru isolate 17N1 2.30.7.9.3.015 OTU 1 seq prokMSA_id:026101 X92160 sp. Lake Bogoria isolate 64B4 2.30.7.9.3.016 OTU 1 seq prokMSA_id:026833 X92164 sp. Lake Elmenteita isolate WE1 2.30.7.9.3.018 OTU 1 seq prokMSA_id:029964 X92167 sp. Lake Bogoria isolate 9B1 2.30.7.9.3.019 OTU 3 seqs prokMSA_id:014506 AB018595 Bacillus alcaliinulinus str. AM31. prokMSA_id:031103 AB043851 Bacillus sp. N-1 prokMSA_id:092147 AY347311 Bacillus sp. A-09 2.30.7.9.3.020 OTU 1 seq prokMSA_id:031334 AB043864 Bacillus sp. AM-001 2.30.7.9.3.021 OTU 3 seqs prokMSA_id:072213 AF137020 Bacillus sp. WW3-SN6 prokMSA_id:032171 AJ431332 Bacillus sp. ikaite 27 isolate ikaite 27 prokMSA_id:014516 X76438 Bacillus sp. DSM 8714. 2.30.7.9.3.022 OTU 1 seq prokMSA_id:032984 AB052395 Symbiobacterium sp. HN16 2.30.7.9.3.023 OTU 1 seq prokMSA_id:033780 Y18214 Desulfonosporus thiosulfogenes 2.30.7.9.3.024 OTU 1 seq prokMSA_id:036300 X92166 sp. Lake Natron isolate 105NT4 2.30.7.9.3.025 OTU 4 seqs prokMSA_id:042049 AB043840 Bacillus sp. 135 prokMSA_id:037519 AB043841 Bacillus sp. 169 prokMSA_id:041956 AB043848 Bacillus sp. C-59-2 prokMSA_id:014508 X76449 Bacillus sp. DSM 8725. 2.30.7.9.3.026 OTU 5 seqs prokMSA_id:040868 AB043839 Bacillus sp. 13 prokMSA_id:037620 AB043843 Bacillus sp. 17-1 prokMSA_id:041599 AB043850 Bacillus sp. K12-5 prokMSA_id:070502 AJ507321 Bacillus sp. NER strain NER prokMSA_id:014513 X76441 Bacillus sp. DSM 8717. 2.30.7.9.3.027 OTU 1 seq prokMSA_id:040983 X92161 sp. Lake Elmenteita isolate WE4 2.30.7.9.3.028 OTU 2 seqs prokMSA_id:091764 AJ493660 Bacillus sp. 6AG strain 6AG prokMSA_id:044055 X92162 sp. Lake Elmenteita isolate 3E1 2.30.7.9.3.029 OTU 1 seq prokMSA_id:044577 X92159 sp. Lake Nakuru isolate 18N1 2.30.7.9.3.030 OTU 2 seqs prokMSA_id:045141 AB035091 Bacillus sp. KSM-S237 prokMSA_id:073180 AB043858 Bacillus sp. 1139 2.30.7.9.3.031 OTU 1 seq prokMSA_id:046071 AB043846 Bacillus sp. C-11 2.30.7.9.3.032 OTU 1 seq prokMSA_id:046652 X92165 sp. Little Lake Magadi isolate 95LM4 2.30.7.9.3.033 OTU 5 seqs prokMSA_id:059480 AF541965 Bacillus baekryungensis prokMSA_id:056525 AF541966 Bacillus hwajinpoensis prokMSA_id:024847 AJ296095 Bacillus sp. OS-5 strain OS-5 prokMSA_id:029745 AY038905 Marine SE165 prokMSA_id:086553 AY228462 Bacillus sp. KMM 3737 2.30.7.9.3.034 OTU 1 seq prokMSA_id:063570 AB069801 clone:CS8.2 2.30.7.9.3.035 OTU 1 seq prokMSA_id:063834 AF454300 Bacillus sp. clone ML615J-19 2.30.7.9.3.036 OTU 1 seq prokMSA_id:066899 AJ306808 clone SHA-118 2.30.7.9.3.037 OTU 7 seqs prokMSA_id:070984 AJ316316 Bacillus sp. LMG 21005 strain LMG 21005 prokMSA_id:067399 AJ456964 Bacillus horikoshii isolate WRs-7 prokMSA_id:077491 AY167815 Bacillus gibsonii strain SAFN-015 prokMSA_id:084332 AY242741 soil clone Tc131-41 prokMSA_id:091219 AY345477 K30 prokMSA_id:014510 X76443 Bacillus sp. DSM 8719. prokMSA_id:014509 X76446 Bacillus sp. DSM 8722. 2.30.7.9.3.038 OTU 1 seq prokMSA_id:014497 AF064705 Bacillus arsenicoselenatis str. E1H. 2.30.7.9.3.039 OTU 1 seq prokMSA_id:014499 X76444 Bacillus sp. DSM 8720. 2.30.7.9.3.040 OTU 2 seqs prokMSA_id:070518 AB043860 Bacillus sp. S2 prokMSA_id:014500 X76445 Bacillus sp. DSM 8721. 2.30.7.9.3.041 OTU 1 seq prokMSA_id:014502 AF140005 Bacillus ML-172 str. ML-172. 2.30.7.9.3.042 OTU 1 seq prokMSA_id:014503 Z48306 Bacillus vedderi str. JaH. 2.30.7.9.3.043 OTU 3 seqs prokMSA_id:014507 X60603 Bacillus alcalophilus DSM 485 . prokMSA_id:014505 X76436 Bacillus alcalophilus DSM 485 . prokMSA_id:014504 X76448 Bacillus sp. DSM 8724. 2.30.7.9.3.044 OTU 2 seqs prokMSA_id:071532 AJ315075 Bacillus decolorationis prokMSA_id:077521 AY167821 Bacillus sp. SAFN-006 2.30.7.9.3.045 OTU 1 seq prokMSA_id:075672 AY162956 clone ZB-Z54 2.30.7.9.3.046 OTU 1 seq prokMSA_id:075734 AY162945 clone ZB-Z18 2.30.7.9.3.048 OTU 1 seq prokMSA_id:076003 AJ532701 clone Gitt-KF-76 2.30.7.9.3.050 OTU 5 seqs prokMSA_id:075937 AY162954 clone ZB-Z42 prokMSA_id:077118 AY162955 clone ZB-Z49 prokMSA_id:076609 AY162957 clone ZB-Z65 prokMSA_id:076588 AY162958 clone ZB-Z76 prokMSA_id:076505 AY162959 clone ZB-Z78 2.30.7.9.3.051 OTU 1 seq prokMSA_id:078009 AB098576 Bacillus sp. TUT1007 2.30.7.9.3.052 OTU 1 seq prokMSA_id:078617 AB094471 Bacillus sp. 2216.25.2 2.30.7.9.3.053 OTU 1 seq prokMSA_id:091099 AY345448 KA40 2.30.7.9.3.054 OTU 1 seq prokMSA_id:092087 AY347312 Bacillus sp. A-11 2.30.7.9.3.055 OTU 1 seq prokMSA_id:093366 AJ582202 firmicute clone Gitt-GS-168 2.30.7.9.3.999 poor quality 59 seqs prokMSA_id:014494 AB022661 Bacillus lentus subsp. Group 3 str. C-125. prokMSA_id:077182 AB086897 Bacillus krulwichii prokMSA_id:058652 AB092342 Alkaliphilic AF112 prokMSA_id:014501 AF064704 Bacillus selenitireducens str. MLS10. prokMSA_id:014514 AF078812 Bacillus alcalophilus str. YB380. prokMSA_id:014515 AF078814 Bacillus 4830 str. 4830. prokMSA_id:014498 AF156311 str. NRRLB-14851. prokMSA_id:020652 AF181907 clone 5d/1 prokMSA_id:025475 AF199460 Bacillus sp. YUA1017 prokMSA_id:044981 AF260748 Bacillus sp. 4.2 prokMSA_id:026954 AF333090 Bacillus sp. A6 prokMSA_id:042897 AF335253 Bacillus sp. LS-1C prokMSA_id:035625 AF335254 Bacillus sp. LS-2C prokMSA_id:017669 AF335255 Bacillus sp. LS-3C prokMSA_id:037477 AF335256 Bacillus sp. LS-4C prokMSA_id:041751 AF335257 Bacillus sp. LS-5C prokMSA_id:035855 AF335259 Bacillus sp. LS-7C prokMSA_id:026065 AF335260 Bacillus sp. LS-8C prokMSA_id:028139 AF335263 Bacillus sp. LS-11C prokMSA_id:028321 AF335265 Bacillus sp. AL-125 prokMSA_id:048328 AF335266 Bacillus sp. AL-127 prokMSA_id:031519 AF335267 Bacillus sp. AR-188 prokMSA_id:048925 AF335268 Bacillus sp. AR-199 prokMSA_id:068318 AF361647 clone MN16BT2-4 prokMSA_id:045282 AF392711 clone CRG3 prokMSA_id:066311 AF507011 Br-z47 prokMSA_id:066309 AF507012 Br-z3 prokMSA_id:064524 AF517526 Bacillus sp. RiMSX20 prokMSA_id:064523 AF517527 Bacillus sp. RiMSX27 prokMSA_id:064519 AF517531 Bacillus sp. BnMSX21 prokMSA_id:064518 AF517532 Bacillus sp. BnMSX24 prokMSA_id:064514 AF517536 BnMSX26 prokMSA_id:064513 AF517537 BnMSX28 prokMSA_id:064511 AF517538 BnMSX29 prokMSA_id:064510 AF517539 RiMSX102 prokMSA_id:064508 AF517541 RiMSX129 prokMSA_id:064507 AF517543 A65 prokMSA_id:047126 AJ344522 Bacillus sp. strain MBT4 prokMSA_id:050255 AJ404488 Bacillus BS1 prokMSA_id:065376 AJ488579 Bacillus sp. C1 strain C1 prokMSA_id:063160 AJ496320 Bacillus sp. KU29 strain KU29 prokMSA_id:057419 AJ517850 clone mHK35.4 prokMSA_id:057415 AJ517858 clone mOO28.1 prokMSA_id:057414 AJ517859 clone mOO28.5 prokMSA_id:057404 AJ517871 clone C61.1 prokMSA_id:076970 AY162946 clone ZB-Z5 prokMSA_id:075229 AY162947 clone ZB-Z23 prokMSA_id:075393 AY162948 clone ZB-Z8 prokMSA_id:075400 AY162949 clone ZB-Z13 prokMSA_id:077023 AY162951 clone ZB-Z14 prokMSA_id:075370 AY162952 clone ZB-Z56 prokMSA_id:076425 AY162953 clone ZB-Z6 prokMSA_id:076880 AY162962 clone ZB-Z38 prokMSA_id:085420 AY172665 Bacillaceae HP16 prokMSA_id:078723 AY179186 Bacillus clausii clone ALK-7 prokMSA_id:085240 AY241452 Bacillus sp. UST020129-005 prokMSA_id:084032 AY258614 Bacillus sp. PAT 05 prokMSA_id:088732 AY304020 soil clone Dpcom59 prokMSA_id:092568 AY357905 Saltmarsh sediment NRL-SS2 2.30.7.10 B.MEGATERIUM_GROUP 1121 seqs 2.30.7.10.1 B.STEAROTHERMOPHILUS_SUBGROUP 263 seqs 2.30.7.10.1.001 OTU 1 seq prokMSA_id:017121 AF267509 Bacillus sp. Isopa9 2.30.7.10.1.003 OTU 27 seqs prokMSA_id:019352 AB040122 Bacillus sp. B-3 prokMSA_id:058678 AB089214 Bacillus sp. E1 prokMSA_id:058675 AB089216 Bacillus sp. E3 prokMSA_id:058676 AB089217 Bacillus sp. F1 prokMSA_id:058674 AB089218 Bacillus sp. F2 prokMSA_id:058673 AB089219 Bacillus sp. G1 prokMSA_id:058672 AB089220 Bacillus sp. G2 prokMSA_id:058671 AB089221 Bacillus sp. G3 prokMSA_id:074568 AB089222 Bacillus sp. G4 prokMSA_id:058670 AB089223 Bacillus sp. G5 prokMSA_id:058668 AB089225 Bacillus sp. G7 prokMSA_id:058667 AB089226 Bacillus sp. G8 prokMSA_id:058666 AB089227 Bacillus sp. H1 prokMSA_id:058662 AB089228 Bacillus sp. H2 prokMSA_id:058665 AB089229 Bacillus sp. H3 prokMSA_id:058663 AB089230 Bacillus sp. H4 prokMSA_id:058664 AB089231 Bacillus sp. H5 prokMSA_id:058661 AB089232 Bacillus sp. H6 prokMSA_id:056614 AB089233 Bacillus sp. IZ3 prokMSA_id:058660 AB089234 Bacillus sp. IZ4 prokMSA_id:058658 AB089235 Bacillus sp. IZ5 prokMSA_id:087853 AJ564609 Geobacillus sp. isolate F16 prokMSA_id:087910 AJ564615 Geobacillus sp. isolate Td prokMSA_id:079427 AY187918 clone X13 prokMSA_id:094874 AY373321 Bacillus pallidus strain R-7748 prokMSA_id:014566 Z26929 Bacillus sp. DSM 2349. prokMSA_id:014542 Z26930 Bacillus pallidus DSM 3670 . 2.30.7.10.1.006 OTU 1 seq prokMSA_id:026206 AF138736 Thermoactinomyces putidus KCTC 3666 complete 2.30.7.10.1.007 OTU 27 seqs prokMSA_id:047880 AB021197 Bacillus thermoglucosidasius prokMSA_id:091468 AB116116 Geobacillus toebii strain:T1640 prokMSA_id:091248 AB116117 Geobacillus toebii strain:T1650 prokMSA_id:091328 AB116119 Geobacillus toebii strain:T1671 prokMSA_id:091564 AB116120 Geobacillus toebii strain:T1680 prokMSA_id:014530 AF067651 Bacillus caldoxylolyticus str. S1812 ATCC 700356. prokMSA_id:040318 AF326278 Bacillus sp. SK-1 complete prokMSA_id:055454 AF537294 Bacillus sp. C1BN prokMSA_id:070262 AF537295 Bacillus sp. M5EXG prokMSA_id:070976 AF537296 Bacillus sp. M10EXG prokMSA_id:071319 AJ271738 Bacillus thermoterrestris strain TS2A prokMSA_id:074137 AJ271739 Bacillus thermoterrestris strain TS24A prokMSA_id:045291 AJ429136 Bacillus sp. md10-1 strain md10-1 prokMSA_id:027372 AJ429137 Bacillus sp. S1b-3 strain S1b-3 prokMSA_id:028566 AJ429138 Bacillus sp. 5-2 strain 5-2 prokMSA_id:069206 AJ489326 Geobacillus caldoxylosilyticus isolate B70 prokMSA_id:069159 AJ489327 Geobacillus sp. F70 prokMSA_id:086870 AJ564610 Geobacillus caldoxylosilyticus isolate F17 prokMSA_id:087594 AJ564613 Geobacillus caldoxylosilyticus isolate F38 prokMSA_id:086955 AJ564617 Geobacillus caldoxylosilyticus isolate Ti prokMSA_id:087339 AJ564618 Geobacillus caldoxylosilyticus isolate Tj prokMSA_id:087954 AJ564619 Geobacillus caldoxylosilyticus isolate Tk prokMSA_id:086077 AY248718 Geobacillus caldoxylosilyticus strain TK4 prokMSA_id:096582 AY397769 Geobacillus sp. R-7653 prokMSA_id:098682 AY397770 Geobacillus sp. R-6707 prokMSA_id:014529 L29507 Bacillus sp. str. Ak1. prokMSA_id:014532 U59630 Bacillus ICPS6 str. ICPS6. 2.30.7.10.1.008 OTU 1 seq prokMSA_id:027737 AF267508 Bacillus sp. Isopa5 2.30.7.10.1.013 OTU 2 seqs prokMSA_id:033289 AB043863 Bacillus sp. TX3 prokMSA_id:014557 AF113512 Bacillus TA2.A1 str. TA2.A1. 2.30.7.10.1.014 OTU 1 seq prokMSA_id:034112 AF411065 Geobacillus kaue strain HU 2.30.7.10.1.015 OTU 1 seq prokMSA_id:034691 AF138733 Thermoactinomyces dichotomicus KCTC 3667 complete 2.30.7.10.1.016 OTU 4 seqs prokMSA_id:078614 AB088361 Thermoactinomyces sp. 700375 prokMSA_id:078879 AB088362 Thermoactinomyces sp. 500275 prokMSA_id:078838 AB088363 Thermoactinomyces sp. C0170 prokMSA_id:064299 AF517773 Hyperthermophilic OGL-7B 2.30.7.10.1.017 OTU 5 seqs prokMSA_id:038956 AJ306648 Saccharococcus sp. clone ETV-T2 prokMSA_id:089370 AJ551330 Anoxybacillus contaminans strain LMG 21881T prokMSA_id:065579 AY095381 yard-trimming-compost clone S-9 prokMSA_id:079241 AY185510 Thermoanaerobacterium sp. clone OTU-S23 prokMSA_id:096417 Y14144 Bacillus sp. isolate ISR04 2.30.7.10.1.018 OTU 1 seq prokMSA_id:041281 AJ251778 Thermoactinomyces sanguinis 2.30.7.10.1.019 OTU 2 seqs prokMSA_id:041714 AB052386 Symbiobacterium sp. MO21 prokMSA_id:044578 AF190460 Symbiobacterium toebii 2.30.7.10.1.022 OTU 88 seqs prokMSA_id:014548 AB002645 str. HTA426. prokMSA_id:014549 AB002646 str. HTA462. prokMSA_id:014550 AB002647 str. HTA1418. prokMSA_id:025595 AB021196 Bacillus stearothermophilus prokMSA_id:014534 AB028234 Bacillus thermodenitrificans str. OHT-1. prokMSA_id:014545 AB034836 Bacillus thermoleovorans str. B23. prokMSA_id:014544 AB034902 Bacillus thermoleovorans str. H41. prokMSA_id:039078 AB051200 Bacillus sp. S prokMSA_id:067723 AB063312 Bacillus sp. TS-3 prokMSA_id:058685 AB089207 Bacillus sp. B1 prokMSA_id:056299 AB089208 Bacillus sp. B2 prokMSA_id:058687 AB089209 Bacillus sp. B3 prokMSA_id:058682 AB089210 Bacillus sp. B4 prokMSA_id:058681 AB089211 Bacillus sp. B5 prokMSA_id:058679 AB089212 Bacillus sp. B6 prokMSA_id:058680 AB089213 Bacillus sp. B7 prokMSA_id:058677 AB089215 Bacillus sp. E2 prokMSA_id:058669 AB089224 Bacillus sp. G62 prokMSA_id:058659 AB089236 Bacillus sp. V0 prokMSA_id:055616 AB089237 Bacillus sp. A3 prokMSA_id:058657 AB089238 Bacillus sp. VA2 prokMSA_id:058656 AB089239 Bacillus sp. G6 prokMSA_id:058655 AB089240 Bacillus sp. D1 prokMSA_id:091739 AB116101 Geobacillus thermodenitrificans strain:T1610 prokMSA_id:091139 AB116102 Geobacillus thermodenitrificans strain:T1611 prokMSA_id:091703 AB116104 Geobacillus thermodenitrificans strain:T1621 prokMSA_id:091379 AB116105 Geobacillus thermodenitrificans strain:T1630 prokMSA_id:091880 AB116106 Geobacillus thermodenitrificans strain:T1660 prokMSA_id:091373 AB116107 Geobacillus thermodenitrificans strain:T1690 prokMSA_id:091321 AB116108 Geobacillus thermodenitrificans strain:T1600 prokMSA_id:091348 AB116109 Geobacillus thermodenitrificans strain:T151 prokMSA_id:091569 AB116110 Geobacillus thermodenitrificans strain:M61 prokMSA_id:091576 AB116111 Geobacillus thermodenitrificans strain:M62 prokMSA_id:091419 AB116112 Geobacillus thermodenitrificans strain:S61 prokMSA_id:091636 AB116113 Geobacillus thermodenitrificans strain:S62 prokMSA_id:091058 AB116114 Geobacillus thermodenitrificans strain:S63 prokMSA_id:091295 AB116115 Geobacillus thermodenitrificans strain:S64 prokMSA_id:014536 AF114424 Bacillus thermodenitrificans str. NS. prokMSA_id:014538 AF114426 Bacillus thermodenitrificans str. T4. prokMSA_id:040665 AF228764 Bacillus sp. Papandayan prokMSA_id:018188 AF228765 Bacillus sp. Cimanggu prokMSA_id:073417 AF276304 Geobacillus uzenensis strain U prokMSA_id:023251 AF276305 Geobacillus uzenensis strain X prokMSA_id:046206 AF276306 Geobacillus subterraneus strain 34 prokMSA_id:026066 AF276307 Geobacillus subterraneus strain K prokMSA_id:073016 AF385083 Bacillus thermoleovorans complete prokMSA_id:045180 AF411064 Geobacillus anatolicus strain SB prokMSA_id:034397 AF465646 Bacillus sp. YNPRH2P-2 prokMSA_id:062656 AF512379 Geobacillus stearothermophilus prokMSA_id:014539 AJ005760 Bacillus stearothermophilus str. K1041. prokMSA_id:049475 AJ011361 clone C4 OTU E prokMSA_id:043124 AJ011362 clone C34 OTU E prokMSA_id:023576 AJ293805 Bacillus vulcani strain 3S-1 prokMSA_id:042405 AJ294817 Bacillus stearothermophilus strain DSM 22T prokMSA_id:058780 AJ315594 Bacillus thermoleovorans strain US105 prokMSA_id:070679 AJ489328 Geobacillus thermoleovorans isolate T70 prokMSA_id:071742 AJ489329 Geobacillus thermoleovorans isolate T80 prokMSA_id:070432 AJ489330 Geobacillus thermoleovorans isolate I80 prokMSA_id:078662 AJ536599 Bacillus thermoleovorans isolate CCR11 prokMSA_id:085750 AJ554207 Geobacillus stearothermophilus strain CECT 48 prokMSA_id:087356 AJ564612 Geobacillus thermoleovorans isolate F30 prokMSA_id:087363 AJ564614 Geobacillus thermoleovorans isolate T7 prokMSA_id:087887 AJ564620 Geobacillus thermoleovorans isolate Tl prokMSA_id:087246 AJ564737 Bacillus stearothermophilus strain CECT 49 prokMSA_id:060459 AY044052 Geobacillus stearothermophilus strain 3 complete prokMSA_id:060460 AY044053 Geobacillus stearothermophilus strain 32A complete prokMSA_id:074615 AY044054 Geobacillus stearothermophilus strain 28 complete prokMSA_id:060458 AY044055 Geobacillus lituanicus complete prokMSA_id:035138 AY062017 Bacillus sp. G2 prokMSA_id:028593 AY074879 Geobacillus sacchari prokMSA_id:057566 AY166603 Geobacillus sp. T1 complete prokMSA_id:078768 AY191842 Geobacillus sp. YMTC1049 prokMSA_id:080221 AY193888 Geobacillus gargaensis prokMSA_id:085270 AY248717 Geobacillus thermoleovorans strain G1 prokMSA_id:088437 AY297092 Geobacillus stearothermophilus strain BGSC 9A21 complete prokMSA_id:088427 AY312404 Geobacillus jurassicus strain DS1 prokMSA_id:090707 AY312405 Geobacillus jurassicus strain DS2 prokMSA_id:089907 AY323205 Geobacillus bogazici prokMSA_id:097474 AY397768 Geobacillus sp. R-7160 prokMSA_id:014564 M77488 Bacillus thermoleovorans ATCC 43513 . prokMSA_id:014552 X57309 Bacillus stearothermophilus str. T10. prokMSA_id:014567 X60618 Bacillus kaustophilus NCIMB 8547 . prokMSA_id:014568 Z26922 Bacillus caldotenax DSM 406. prokMSA_id:014543 Z26923 Bacillus thermoleovorans DSM 5366 . prokMSA_id:014551 Z26924 Bacillus caldolyticus DSM 405. prokMSA_id:014528 Z26925 Bacillus caldovelox DSM 411. prokMSA_id:014555 Z26926 Bacillus thermocatenulatus DSM 730 . prokMSA_id:014533 Z26927 Bacillus denitrificans DSM 466. 2.30.7.10.1.023 OTU 1 seq prokMSA_id:048294 AF411066 Geobacillus kaue strain NB 2.30.7.10.1.024 OTU 1 seq prokMSA_id:063107 AY093475 clone MB-C2-103 2.30.7.10.1.025 OTU 1 seq prokMSA_id:063745 AJ493665 Bacillus thermantarcticus 2.30.7.10.1.027 OTU 20 seqs prokMSA_id:014526 AB015568 str. BD5-12. prokMSA_id:014521 AF001960 Bacillus flavothermus str. AB001. prokMSA_id:014522 AF001961 Bacillus flavothermus str. AB002. prokMSA_id:014523 AF001962 Bacillus flavothermus str. AB003. prokMSA_id:014524 AF001963 Bacillus flavothermus str. AB004. prokMSA_id:014525 AF001964 Bacillus flavothermus str. AB005. prokMSA_id:014519 AF004589 Bacillus flavothermus DSM 2641. prokMSA_id:066045 AF510985 Anoxybacillus kamchatkensis prokMSA_id:014520 AJ010478 Bacillus sp. str. k-1. prokMSA_id:064346 AY122325 Anoxybacillus gonensis prokMSA_id:078530 AY198416 Bacillus sp. YMY1010 prokMSA_id:085315 AY248706 Anoxybacillus gonensis strain A2 prokMSA_id:084072 AY248707 Anoxybacillus gonensis strain A4 prokMSA_id:083767 AY248708 Anoxybacillus gonensis strain A7 prokMSA_id:084979 AY248709 Anoxybacillus kestanbolinensis strain K1 prokMSA_id:085346 AY248710 Anoxybacillus kestanbolinensis strain K2 prokMSA_id:085404 AY248711 Anoxybacillus kestanbolinensis strain K4 prokMSA_id:082680 AY248715 Anoxybacillus pushchinoensis strain A8 prokMSA_id:041783 U46747 Bacillus sp. OS-ac-18 prokMSA_id:014518 Z26932 Bacillus flavothermus DSM 2641. 2.30.7.10.1.028 OTU 2 seqs prokMSA_id:066490 AY100598 clone cvf56088 prokMSA_id:066466 AY100626 clone cvf77073 2.30.7.10.1.029 OTU 1 seq prokMSA_id:066828 AY096183 clone F2-70 2.30.7.10.1.030 OTU 1 seq prokMSA_id:066848 AY096166 clone F2-31 2.30.7.10.1.031 OTU 1 seq prokMSA_id:067271 AF495417 clone M10 2.30.7.10.1.032 OTU 1 seq prokMSA_id:014531 AJ005759 Bacillus stearothermophilus str. NUB3621. 2.30.7.10.1.033 OTU 1 seq prokMSA_id:014540 AJ242495 Thermicanus aegyptius str. ET-5b. 2.30.7.10.1.034 OTU 1 seq prokMSA_id:014541 AB012934 Bacillus sp. str. MH-1. 2.30.7.10.1.035 OTU 2 seqs prokMSA_id:014553 L09227 Saccharococcus thermophilus str. 657 ATCC 43125 . prokMSA_id:014565 X70430 Saccharococcus thermophilus str. 657 ATCC 43125 . 2.30.7.10.1.036 OTU 1 seq prokMSA_id:014558 U40230 unnamed organism. 2.30.7.10.1.037 OTU 1 seq prokMSA_id:014559 AB002648 str. HTA1422. 2.30.7.10.1.038 OTU 4 seqs prokMSA_id:014560 AB002649 str. HTA1417. prokMSA_id:014561 AB002650 str. HTA1420. prokMSA_id:014562 AB002651 str. HTA1416. prokMSA_id:014563 AB002652 str. HTA1415. 2.30.7.10.1.039 OTU 5 seqs prokMSA_id:087915 AJ564608 Geobacillus sp. isolate F10 prokMSA_id:086785 AJ564611 Geobacillus sp. isolate F20 prokMSA_id:087975 AJ564616 Geobacillus sp. isolate Tf prokMSA_id:088727 AY288912 Bacillus thermozeamaize prokMSA_id:014569 U62623 Bacillus sp. str. ICPS10. 2.30.7.10.1.040 OTU 1 seq prokMSA_id:078806 AB088364 Thermoactinomyces sp. H0165 2.30.7.10.1.041 OTU 1 seq prokMSA_id:085279 AB092860 clone:ALU18 2.30.7.10.1.999 poor quality 56 seqs prokMSA_id:044095 AB010623 firmicute clone ASB009 prokMSA_id:038039 AB048254 Bacillus stearothermophilus strain:MC-A prokMSA_id:060019 AB084521 ODP-193-02 prokMSA_id:060018 AB084522 ODP-193-14 prokMSA_id:088281 AB110008 Anoxybacillus voinovskiensis prokMSA_id:091254 AB116103 Geobacillus thermodenitrificans strain:T1620 prokMSA_id:091479 AB116118 Geobacillus toebii strain:T1670 prokMSA_id:072134 AF078909 Bacillus sp. prokMSA_id:014537 AF114425 Bacillus thermodenitrificans str. S. prokMSA_id:046634 AF141875 Bacillus sp. TP10A.1 prokMSA_id:054844 AF175645 WJGRT-133 prokMSA_id:046264 AF276308 Geobacillus subterraneus strain Sam prokMSA_id:028136 AF353274 compost clone SSCP5d0-5 prokMSA_id:060406 AF380929 Bacillus pallidus prokMSA_id:017856 AF422579 clone t004 prokMSA_id:061240 AF432659 clone SMW4.55WL prokMSA_id:050085 AF440439 Bacillus sp. TP1.1 prokMSA_id:025677 AF482430 Anoxybacillus flavithermus prokMSA_id:066146 AF509482 MF16 prokMSA_id:066141 AF509483 MF17 prokMSA_id:062652 AF512380 Anoxybacillus flavithermus strain B prokMSA_id:062654 AF512381 Anoxybacillus flavithermus strain C prokMSA_id:062653 AF512382 Anoxybacillus flavithermus strain D prokMSA_id:071033 AF517644 Bacillus sp. PS3D prokMSA_id:055842 AJ292908 WR8102 clone WR8102 prokMSA_id:038569 AJ298269 SCBP-D6 prokMSA_id:044858 AJ298270 SCBP-D7 prokMSA_id:036810 AJ298271 SCBP-D11 prokMSA_id:074756 AJ298272 SCBP-D12 prokMSA_id:026647 AJ404496 Bacillus BS3 prokMSA_id:074097 AY079151 Geobacillus uralicus prokMSA_id:084047 AY092232 clone BI160 prokMSA_id:082687 AY092233 clone BI87 prokMSA_id:083160 AY092234 clone BI94 prokMSA_id:085729 AY092235 clone BI120 prokMSA_id:066721 AY095261 Bacillus sp. Tosh prokMSA_id:066887 AY096125 clone M1-4 prokMSA_id:056569 AY096145 clone F1-13 prokMSA_id:066855 AY096159 clone F2-20 prokMSA_id:066089 AY099226 clone MTU-1 prokMSA_id:066086 AY099229 clone MTU-4 prokMSA_id:084582 AY271763 Geobacillus sp. prokMSA_id:084203 AY271780 clone 42 prokMSA_id:088558 AY307022 Bacillus sp. NR-1001 prokMSA_id:088095 AY330699 Geobacillus thermoleovorans prokMSA_id:059702 BD137583 Symbiotic microorganisms and decomposing means of organic wastes utilizing the symbiotic microorganisms prokMSA_id:070200 BD137584 Symbiotic microorganisms and decomposing means of organic wastes utilizing the symbiotic microorganisms prokMSA_id:014546 M77484 Bacillus caldolyticus. prokMSA_id:014547 M77485 Bacillus caldovelox. prokMSA_id:014535 M77487 Bacillus thermodenitrificans. prokMSA_id:014556 M77490 Thermoactinomyces candidus. prokMSA_id:014527 X60640 Bacillus stearothermophilus NCDO 1768 . prokMSA_id:014571 X60641 Bacillus thermoglucosidasius str. KP 1006 ATCC 43742 . prokMSA_id:014517 X62180 Bacillus caldotenax DSM 406. prokMSA_id:014570 Z26928 Bacillus thermodenitrificans DSM 465. prokMSA_id:014554 Z26931 Bacillus thermoalkalophilus DSM 6866. 2.30.7.10.2 B.SMITHII_SUBGROUP 10 seqs 2.30.7.10.2.001 OTU 3 seqs prokMSA_id:023483 AY062018 Bacillus sp. C7 prokMSA_id:094287 AY373319 Bacillus smithii strain R-7170 prokMSA_id:014573 Z26935 Bacillus smithii DSM 4216 . 2.30.7.10.2.002 OTU 1 seq prokMSA_id:076677 AJ504797 Bacillus eolicus strain 4-1T 2.30.7.10.2.003 OTU 1 seq prokMSA_id:078790 AY179190 Bacillus alcalophilus clone ALK-K 2.30.7.10.2.004 OTU 1 seq prokMSA_id:098079 AY422985 Bacillus sp. R-7413 2.30.7.10.2.999 poor quality 4 seqs prokMSA_id:030972 AF145858 Metal-contaminated soil clone K20-66 prokMSA_id:049175 AY062019 Bacillus sp. C7 prokMSA_id:014574 D78316 Bacillus smithii JCM 9076 . prokMSA_id:014572 X60643 Bacillus smithii DSM 4216 . 2.30.7.10.3 B.METHANOLICUS_SUBGROUP 24 seqs 2.30.7.10.3.001 OTU 3 seqs prokMSA_id:070683 AF519460 Bacillus pichinotyi strain RS1 prokMSA_id:069411 AF519463 Bacillus pichinotyi strain RS13 prokMSA_id:071589 AF519464 Bacillus pichinotyi strain RS2 2.30.7.10.3.002 OTU 1 seq prokMSA_id:069694 AF519462 Bacillus casamancensis 2.30.7.10.3.003 OTU 1 seq prokMSA_id:040866 AB034719 compost 5-18 2.30.7.10.3.004 OTU 1 seq prokMSA_id:041508 AF226216 maize root Zmrc174 2.30.7.10.3.005 OTU 1 seq prokMSA_id:064028 AB087351 clone:F10 2.30.7.10.3.006 OTU 1 seq prokMSA_id:066785 AF500320 Bacillus sp. PE4 2.30.7.10.3.007 OTU 1 seq prokMSA_id:069177 AY145532 Bacillus sp. GP-4 2.30.7.10.3.008 OTU 2 seqs prokMSA_id:014578 S42879 Bacillus methanolicus str. C1 NCIMB 13114. prokMSA_id:014575 X64465 Bacillus methanolicus str. C1 NCIMB 13114. 2.30.7.10.3.009 OTU 1 seq prokMSA_id:014576 AB009200 clone RFN44. 2.30.7.10.3.010 OTU 2 seqs prokMSA_id:014577 U20384 Bacillus infernus str. TH-22 =SMCC/W 478. prokMSA_id:014581 U20385 Bacillus infernus str. TH-23 =SMCC/W 479. 2.30.7.10.3.011 OTU 1 seq prokMSA_id:096553 AY382610 clone S441 2.30.7.10.3.999 poor quality 9 seqs prokMSA_id:024762 AF437539 clone PDSB036 prokMSA_id:072277 AJ316304 Bacillus decolorationis strain LMG 21001 prokMSA_id:031456 AJ421097 clone C9-K35 prokMSA_id:056338 AY099230 clone MTU-5 prokMSA_id:055379 AY099231 clone MTU-6 prokMSA_id:066084 AY099232 clone MTU-7 prokMSA_id:014582 U68653 clone P20. prokMSA_id:014580 U68679 clone P54. prokMSA_id:014579 Y11633 clone 615. 2.30.7.10.4 B.SPOROTHERMODURANS_SUBGROUP 134 seqs 2.30.7.10.4.001 OTU 1 seq prokMSA_id:016783 AB021182 Bacillus carboniphilus 2.30.7.10.4.003 OTU 11 seqs prokMSA_id:091581 AB116136 Bacillus coagulans strain:T132 prokMSA_id:091780 AB116140 Bacillus coagulans strain:T136 prokMSA_id:091516 AB116142 Bacillus coagulans strain:T153 prokMSA_id:091299 AB116143 Bacillus coagulans strain:T154 prokMSA_id:048301 AF252319 pPD6 prokMSA_id:028306 AF252329 Bacillus sp. HC15 prokMSA_id:056260 AF346895 Bacillus coagulans complete prokMSA_id:042356 AF466695 Bacillus coagulans strain IDSp complete prokMSA_id:094784 AJ563373 Bacillus coagulans clone LMG 12346 prokMSA_id:091762 AY294322 Bacillus coagulans isolate A from Chile prokMSA_id:014599 D16267 Bacillus coagulans IAM 12463 . 2.30.7.10.4.004 OTU 1 seq prokMSA_id:017956 AB020192 Bacillus sp. strain TGS137 2.30.7.10.4.005 OTU 13 seqs prokMSA_id:018183 AB020196 Bacillus sp. strain TGS537 prokMSA_id:044525 AB020197 Bacillus sp. strain TGS650 prokMSA_id:041225 AB034714 compost 4-50 prokMSA_id:097746 AB121094 Bacillus thermoamylovorans prokMSA_id:023833 AF252322 pPD10 prokMSA_id:062978 AF526932 Bacillus sp. clone 84-6 rrn prokMSA_id:091989 AY294319 Bacillus circulans isolate B from Poland prokMSA_id:094901 AY373320 Bacillus thermoamylovorans strain R-7499 prokMSA_id:014594 L27478 Bacillus thermoamylovorans str. DKP CNCM I-1378 . prokMSA_id:080062 Y13063 B.circulans strain WSBC 20059 prokMSA_id:079671 Y13064 B.circulans strain WSBC 20060 prokMSA_id:079728 Y13065 B.circulans strain WSBC 20061 prokMSA_id:096928 Y14141 Lactobacter thermoamylovorans isolate ISR01 2.30.7.10.4.007 OTU 1 seq prokMSA_id:021214 AB034717 compost 5-10 2.30.7.10.4.009 OTU 10 seqs prokMSA_id:043776 AB034705 compost 4-11 prokMSA_id:028732 AB034715 compost 4-57 prokMSA_id:047302 AB034716 compost 4-74 prokMSA_id:025041 AB066341 Bacillus sp. TAT112 prokMSA_id:016862 AB066342 Bacillus sp. TAT105 prokMSA_id:014596 AF071858 Bacillus 115898 str. 115898. prokMSA_id:051860 AF252326 pPD15 prokMSA_id:095107 AY368598 clone nc-10 prokMSA_id:094675 AY368606 clone nc-15 prokMSA_id:098060 AY397764 Bacillus sp. R-6488 2.30.7.10.4.010 OTU 1 seq prokMSA_id:033595 AB034721 compost 4-75 2.30.7.10.4.012 OTU 1 seq prokMSA_id:034734 AF326360 Bacillus sp. MB-11 2.30.7.10.4.013 OTU 1 seq prokMSA_id:036427 AF429355 CCAJG117 2.30.7.10.4.014 OTU 2 seqs prokMSA_id:040292 AB034711 compost 4-29 prokMSA_id:066467 AY100625 clone cvf77034 2.30.7.10.4.015 OTU 1 seq prokMSA_id:040429 AB034720 compost 5-33 2.30.7.10.4.017 OTU 2 seqs prokMSA_id:070759 AJ315061 Bacillus sp. 19493 prokMSA_id:073206 AJ315063 Bacillus sp. 19495 2.30.7.10.4.020 OTU 12 seqs prokMSA_id:014588 AB030930 Bacillus IPso1 str. IPso1. prokMSA_id:014589 AB030931 Bacillus IPso2 str. IPso2. prokMSA_id:071674 AF329476 Bacillus sporothermodurans prokMSA_id:048382 AF393508 Bacillus oleronius prokMSA_id:066283 AF506063 Bacillus sp. LCSAOTU16 prokMSA_id:071698 AF547209 Bacillus acidogenesis prokMSA_id:069789 AJ250318 LMG 18435 strain LMG 18435 prokMSA_id:019142 AJ302941 Bacillus sporothermodurans strain LMG 17897 MB 372 prokMSA_id:014585 U49078 Bacillus sporothermodurans str. M215 DSM 10599 . prokMSA_id:014587 U49079 Bacillus sporothermodurans str. M215 DSM 10599 . prokMSA_id:014584 U49080 Bacillus sporothermodurans str. M215 DSM 10599 . prokMSA_id:014591 X82492 Bacillus oleronius str. Rt 10 DSM 9356 . 2.30.7.10.4.021 OTU 1 seq prokMSA_id:066482 AY100608 clone cvf70075 2.30.7.10.4.022 OTU 1 seq prokMSA_id:066830 AY096181 clone F2-61 2.30.7.10.4.023 OTU 1 seq prokMSA_id:014593 Y07577 clone DA136. 2.30.7.10.4.024 OTU 1 seq prokMSA_id:014595 AF113134 Bacillus YP str. YP. 2.30.7.10.4.025 OTU 1 seq prokMSA_id:014600 D78310 Bacillus badius ATCC 14574 . 2.30.7.10.4.026 OTU 1 seq prokMSA_id:014601 D78313 Bacillus coagulans JCM 2257. 2.30.7.10.4.027 OTU 1 seq prokMSA_id:074252 AF227865 str. 86348 2.30.7.10.4.028 OTU 1 seq prokMSA_id:076944 AJ519637 Clostridium sp. clone Sh765B-AG-44 2.30.7.10.4.030 OTU 9 seqs prokMSA_id:035194 AF252317 pPD4 prokMSA_id:045759 AF252323 pPD12 prokMSA_id:036181 AF252324 pPD13 prokMSA_id:034699 AF252325 pPD14 prokMSA_id:076996 AY147275 clone THM-5 prokMSA_id:094875 AY368601 clone nc-12a prokMSA_id:095175 AY368602 clone nc-12b prokMSA_id:094553 AY368616 'c40-18b 40S1e' prokMSA_id:094620 AY368619 'c60-12a 60L1bb' 2.30.7.10.4.031 OTU 1 seq prokMSA_id:091420 AY294318 Bacillus circulans from Finland 2.30.7.10.4.032 OTU 1 seq prokMSA_id:091890 AB116133 Low G+C Gram-positive M55 strain:M55 2.30.7.10.4.999 poor quality 58 seqs prokMSA_id:019876 AB029410 4-13:1 prokMSA_id:017808 AB030928 Bacillus sporothermodurans strain:INGN3 prokMSA_id:068637 AB081821 seuence clone:B-04 prokMSA_id:017439 AF181906 clone 0d/12 prokMSA_id:026681 AF181908 clone 5d/2 prokMSA_id:036430 AF181910 clone 5d/4 prokMSA_id:020141 AF181918 clone 7d/4 prokMSA_id:073951 AF227850 Bacillus sp. 86348 prokMSA_id:035545 AF353268 compost clone SSCP9d3-7 prokMSA_id:039894 AF353269 compost clone SSCP16d9-14 prokMSA_id:068105 AF365630 clone BM89DS1BA1 prokMSA_id:042397 AF437516 clone PDSB005 prokMSA_id:043883 AF437543 clone PDSB040 prokMSA_id:051820 AF437546 clone PDSB043 prokMSA_id:024122 AF437553 clone PDSB050 prokMSA_id:019658 AF437554 clone PDSB051 prokMSA_id:040270 AF437557 clone PDSB054 prokMSA_id:042830 AF437560 clone PDSB058 prokMSA_id:018026 AF437561 clone PDSB059 prokMSA_id:019467 AF437563 clone PDSB061 prokMSA_id:039330 AF437582 clone PDSB084 prokMSA_id:040574 AF437587 clone PDSB089 prokMSA_id:031296 AF437588 clone PDSB092 prokMSA_id:019167 AF437589 clone PDSB093 prokMSA_id:029692 AF437604 clone PDSB115 prokMSA_id:041545 AF437606 clone PDSB117 prokMSA_id:067205 AF497254 Bacillus sp. BacB8 prokMSA_id:067009 AF500294 Marine SIMO IS-S74-237 prokMSA_id:065343 AF514789 clone Dpcom13 prokMSA_id:060469 AF515486 Bacillus sporothermodurans prokMSA_id:038624 AJ247092 Bulk4 prokMSA_id:027057 AJ302942 Bacillus sporothermodurans strain LMG 17883 MB 385 prokMSA_id:022932 AJ311417 maize rhizosphere c3_45 prokMSA_id:068835 AJ344518 Bacillus sp. strain SFLB12 prokMSA_id:018385 AJ404495 Bacillus BS2 prokMSA_id:074046 AJ438306 Bacillus sp. R-13753 prokMSA_id:078041 AJ491775 strain LMG 21540 prokMSA_id:094616 AJ563374 Bacillus coagulans clone LMG 21801 prokMSA_id:033277 AY062013 Bacillus sp. G911 prokMSA_id:033604 AY062014 Bacillus sp. G11 prokMSA_id:067349 AY095370 Marine SIMO IS-574-241 prokMSA_id:066598 AY095479 Marine SIMO IS-S74-239 prokMSA_id:075920 AY162950 clone ZB-Z66 prokMSA_id:081474 AY197332 Bacillus thermoamylovorans strain SW09 prokMSA_id:081788 AY197333 Bacillus thermoamylovorans strain SW25 prokMSA_id:091945 AY266435 Marine SIMO-1598 prokMSA_id:091844 AY294320 Bacillus circulans isolate B from Portugal prokMSA_id:091159 AY294321 Bacillus circulans isolate B from South Africa prokMSA_id:091663 AY294323 Bacillus coagulans isolate C from South Africa prokMSA_id:091967 AY294324 Bacillus coagulans isolate A from South Africa prokMSA_id:094288 AY368597 clone nc-09 prokMSA_id:094464 AY368620 'c60-28 60L7' prokMSA_id:014597 M58832 str. D. prokMSA_id:014590 NONE Bacillus sp. prokMSA_id:014586 U68665 clone P37. prokMSA_id:014583 X60602 Alicyclobacillus acidoterrestris DSM 3922 . prokMSA_id:014598 X60614 Bacillus coagulans NCDO 1761 . prokMSA_id:014592 X81130 Bacillus sp. str. Termite isolate iv. 2.30.7.10.5 VR.PANTOTHENTICUS_SUBGROUP 102 seqs 2.30.7.10.5.001 OTU 8 seqs prokMSA_id:014611 AB010863 firmicute strain HTE831 prokMSA_id:059720 AP004593 Oceanobacillus iheyensis genomic section 1/13 prokMSA_id:059716 AP004595 Oceanobacillus iheyensis genomic section 3/13 prokMSA_id:059718 AP004596 Oceanobacillus iheyensis genomic section 4/13 prokMSA_id:059715 AP004600 Oceanobacillus iheyensis genomic section 8/13 prokMSA_id:091699 AY345420 K2-35 prokMSA_id:091765 AY345480 K29 prokMSA_id:059386 NC_004193 Oceanobacillus iheyensis complete genome 2.30.7.10.5.002 OTU 1 seq prokMSA_id:016928 AJ238042 Filobacillus milensis 2.30.7.10.5.003 OTU 1 seq prokMSA_id:018640 AF275708 Hailaer soda lake T2 2.30.7.10.5.004 OTU 1 seq prokMSA_id:019694 AY057394 Lentibacillus salicampi 2.30.7.10.5.005 OTU 1 seq prokMSA_id:021848 AJ309562 Bacillus nitritophilus strain IB-256 2.30.7.10.5.006 OTU 1 seq prokMSA_id:022996 AF275698 Hailaer soda lake F10 2.30.7.10.5.007 OTU 3 seqs prokMSA_id:059261 AF540987 Bacillus litoralis prokMSA_id:034922 AJ309559 Bacillus litoralis strain IB-B8 prokMSA_id:047685 AJ309561 Bacillus litoralis strain IB-B4 2.30.7.10.5.008 OTU 2 seqs prokMSA_id:042141 AF326365 Bacillus sp. MB-9 prokMSA_id:023741 AJ391200 marine AS-39 2.30.7.10.5.009 OTU 3 seqs prokMSA_id:026016 AJ238041 Bacillus haloalkaliphilus prokMSA_id:091760 AJ493661 Bacillus sp. 4AG strain 4AG prokMSA_id:014602 X72876 Bacillus sp. str. WN13 DSM 5271. 2.30.7.10.5.010 OTU 2 seqs prokMSA_id:073885 AF166093 Bacillus permians complete prokMSA_id:014612 AJ009793 Bacillus marismortui str. 123. 2.30.7.10.5.011 OTU 1 seq prokMSA_id:063140 AY121439 Salibacillus sp. YIM-kkny16 2.30.7.10.5.012 OTU 1 seq prokMSA_id:032515 AF369646 Halobacillus sp. AB007 2.30.7.10.5.013 OTU 3 seqs prokMSA_id:039395 AB021186 Bacillus halodenitrificans prokMSA_id:087957 AJ488179 Bacillus sp. NT16 prokMSA_id:078606 AY179193 Bacillus halodenitrificans clone H3 2.30.7.10.5.015 OTU 1 seq prokMSA_id:040994 AB034713 compost 4-49 2.30.7.10.5.016 OTU 2 seqs prokMSA_id:041371 AB021188 Bacillus halophilus prokMSA_id:042873 AJ243920 Bacillus halophilus strain DSM 4771T 2.30.7.10.5.017 OTU 3 seqs prokMSA_id:042215 AB039331 Virgibacillus pantothenticus strain:M1-4 prokMSA_id:091251 AY345410 K2-60 prokMSA_id:014608 D16275 Virgibacillus pantothenticus IAM 11061 . 2.30.7.10.5.019 OTU 1 seq prokMSA_id:044456 AF418602 Amphibacillus tropicus 2.30.7.10.5.020 OTU 1 seq prokMSA_id:044837 AB034706 compost 4-13 2.30.7.10.5.021 OTU 2 seqs prokMSA_id:046172 AJ315056 Virgibacillus necropolis prokMSA_id:070340 AJ316302 Virgibacillus carmonensis strain LMG 20964 T 2.30.7.10.5.023 OTU 4 seqs prokMSA_id:039733 AJ291752 Halobacillus sp. K3-1 strain K3-1 prokMSA_id:072101 AJ291753 Halobacillus sp. I3 strain I3 prokMSA_id:071975 AJ291754 Halobacillus sp. I7 strain I7 prokMSA_id:063158 AY121429 Halobacillus sp. YIM-kkny2 2.30.7.10.5.024 OTU 1 seq prokMSA_id:056418 AB087828 Paraliobacillus ryukyuensis 2.30.7.10.5.026 OTU 12 seqs prokMSA_id:066685 AF500003 Halobacillus salinus strain HSL-3 prokMSA_id:060380 AF513459 Bacillaceae LA42 prokMSA_id:060368 AF513472 Bacillaceae PH28 prokMSA_id:044334 AJ310149 Halobacillus trueperi strain DSM 10404T prokMSA_id:066422 AJ486874 Halobacillus karajiensis strain DSM 14948 prokMSA_id:063146 AY121438 Halobacillus sp. YIM-kkny15 prokMSA_id:080237 AY190534 Halobacillus locisalis prokMSA_id:092113 AY351389 Halobacillus sp. AD-6 prokMSA_id:092555 AY351395 Halobacillus sp. D-8 prokMSA_id:014616 X62174 Sporosarcina ureae. prokMSA_id:014617 X62174 Halobacillus halophilus NCIMB 2269 . prokMSA_id:014614 X94558 Halobacillus litoralis str. SL-4 DSM 10405 . 2.30.7.10.5.027 OTU 1 seq prokMSA_id:062835 AJ496807 Amphibacillus xylanus strain DSM 6626 2.30.7.10.5.028 OTU 1 seq prokMSA_id:063145 AY121437 Gracilibacillus sp. YIM-kkny13 2.30.7.10.5.029 OTU 1 seq prokMSA_id:063156 AY121432 Amphibacillus sp. YIM-kkny6 2.30.7.10.5.030 OTU 1 seq prokMSA_id:063157 AY121430 Salibacillus sp. YIM-kkny3 2.30.7.10.5.031 OTU 1 seq prokMSA_id:066407 AF506966 Halophilic 1HS35b 2.30.7.10.5.032 OTU 1 seq prokMSA_id:014603 X82436 Gracilibacillus dipsosauri str. DD1. 2.30.7.10.5.033 OTU 1 seq prokMSA_id:014604 AF036922 Gracilibacillus halotolerans str. NN. 2.30.7.10.5.034 OTU 2 seqs prokMSA_id:014609 AJ012667 Virgibacillus proomii LMG 12370. prokMSA_id:094551 AY373323 Virgibacillus proomii strain R-6762 2.30.7.10.5.035 OTU 1 seq prokMSA_id:014615 X90834 Marinococcus albus DSM 20748 . 2.30.7.10.5.036 OTU 1 seq prokMSA_id:073499 AF295302 Bacillus endophyticus 2.30.7.10.5.037 OTU 1 seq prokMSA_id:089195 AB107894 Cerasibacillus quisquiliarum 2.30.7.10.5.038 OTU 2 seqs prokMSA_id:089467 AY321434 Bacillaceae 8-2 prokMSA_id:089985 AY321437 Bacillaceae W11-1 2.30.7.10.5.039 OTU 1 seq prokMSA_id:090097 Y13066 Bacillus sp. strain K13 2.30.7.10.5.040 OTU 1 seq prokMSA_id:090103 AY321435 Bacillaceae 20-5 2.30.7.10.5.041 OTU 1 seq prokMSA_id:090505 AY321436 Bacillaceae 25-7 2.30.7.10.5.042 OTU 4 seqs prokMSA_id:091668 AB116127 Low G+C Gram-positive M33 strain:M33 prokMSA_id:091897 AB116132 Low G+C Gram-positive M54 strain:M54 prokMSA_id:091536 AB116141 Low G+C Gram-positive T152 strain:T152 prokMSA_id:098115 AY422988 Virgibacillus sp. R-6767 2.30.7.10.5.043 OTU 1 seq prokMSA_id:097903 AY422987 Virgibacillus sp. R-7428 2.30.7.10.5.999 poor quality 25 seqs prokMSA_id:038199 AB029411 13-13:1 prokMSA_id:047565 AB029412 13-20:1 prokMSA_id:037358 AF181909 clone 5d/3 prokMSA_id:021863 AF257302 marine Gram-positive DH148-Z18 prokMSA_id:032912 AF277485 Virgibacillus SIC.42381 prokMSA_id:032490 AF329473 Bacillus sp. LMG 19636 prokMSA_id:050230 AF376345 ckncm112-B52.F1 prokMSA_id:021864 AF418603 Amphibacillus fermentum prokMSA_id:064512 AF517540 RiMSX118 prokMSA_id:051910 AJ316296 Virgibacillus picturae strain LMG 20958 prokMSA_id:046367 AJ316298 Virgibacillus picturae strain LMG 20960 prokMSA_id:070390 AJ316299 Virgibacillus picturae strain LMG 20961 prokMSA_id:022573 AJ316300 Virgibacillus picturae strain LMG 20962 prokMSA_id:042986 AJ316301 Virgibacillus picturae strain LMG 20963 prokMSA_id:051716 AJ316303 Virgibacillus carmonensis strain LMG 20966 prokMSA_id:078544 AJ536431 Bacillus sp. 6:21 isolate 6:21 558BP prokMSA_id:078506 AJ536432 Bacillus sp. 6:21 isolate 6:21 649BP prokMSA_id:063142 AY121434 Virgibacillus picturae prokMSA_id:086291 AY242551 Bacillus sp. clone A1116S prokMSA_id:093139 AY357892 Halobacillus sp. NRL-CB1 prokMSA_id:014610 D78477 Virgibacillus pantothenticus IAM 11061 . prokMSA_id:014606 D82065 Amphibacillus xylanus str. Ep01 JCM 7361 . prokMSA_id:014605 U85901 Halobacillus sp. str. MB6-08. prokMSA_id:014607 X60627 Virgibacillus pantothenticus NCDO 1765. prokMSA_id:014613 Y11603 Salibacillus salexigens str. C-20Mo CCM 4646 . 2.30.7.10.6 B.BADIUS_SUBGROUP 21 seqs 2.30.7.10.6.001 OTU 1 seq prokMSA_id:056705 AY100623 clone cvf64059 2.30.7.10.6.002 OTU 3 seqs prokMSA_id:073402 AF227844 Bacillus sp. 76992 prokMSA_id:047208 AF354665 Bacillus sp. UM14 prokMSA_id:068753 AF479347 Glacial ice G200-N5 2.30.7.10.6.003 OTU 1 seq prokMSA_id:052810 AF423288 soil clone 720-1 2.30.7.10.6.004 OTU 1 seq prokMSA_id:066778 AF500325 Bacillus sp. PG3 2.30.7.10.6.005 OTU 1 seq prokMSA_id:014618 X62178 Bacillus aminovorans NCIMB 8292 . 2.30.7.10.6.006 OTU 2 seqs prokMSA_id:077601 AB098575 Bacillus badius prokMSA_id:014620 X77790 Bacillus badius ATCC 14574 . 2.30.7.10.6.007 OTU 1 seq prokMSA_id:014621 AF071857 Bacillus '112442 JS2' str. 112442 JS2. 2.30.7.10.6.008 OTU 1 seq prokMSA_id:075296 AJ519634 Clostridium sp. clone Sh765B-TzT-10 2.30.7.10.6.009 OTU 1 seq prokMSA_id:075430 AY147276 clone THM-6 2.30.7.10.6.010 OTU 2 seqs prokMSA_id:077568 AY167801 Bacillus sp. SAFN-028 prokMSA_id:077436 AY167810 Bacillus sp. SAFN-020 2.30.7.10.6.011 OTU 1 seq prokMSA_id:091707 AB116130 Low G+C Gram-positive M52 strain:M52 2.30.7.10.6.012 OTU 1 seq prokMSA_id:096637 AY382192 Bacillus sp. R-6521 2.30.7.10.6.999 poor quality 5 seqs prokMSA_id:035488 AF181919 clone 7d/5 prokMSA_id:050561 AF423246 soil clone 309-1 prokMSA_id:067651 AJ438292 Bacillus sp. R-1168 prokMSA_id:083731 AY214780 Bacilli clone BB-1-B11 prokMSA_id:014619 X60610 Bacillus badius NCDO 1760 . 2.30.7.10.7 B.LENTUS_SUBGROUP 34 seqs 2.30.7.10.7.001 OTU 1 seq prokMSA_id:022216 AB062696 Bacillus aestuarii 2.30.7.10.7.002 OTU 1 seq prokMSA_id:059262 AF540986 Bacillus sp. 110602D 2.30.7.10.7.003 OTU 1 seq prokMSA_id:024211 AF286485 Bacillus sp. VAN26 2.30.7.10.7.004 OTU 1 seq prokMSA_id:028803 AB043854 Bacillus sp. N6 2.30.7.10.7.005 OTU 3 seqs prokMSA_id:071600 AB066336 Bacillus sp. TP50 prokMSA_id:040353 AB066337 Bacillus sp. TP81 prokMSA_id:032275 AB066346 Bacillus sp. TH64 2.30.7.10.7.006 OTU 1 seq prokMSA_id:039597 AJ276808 Virgibacillus picturae strain LMG-19416 2.30.7.10.7.007 OTU 1 seq prokMSA_id:039686 AF463535 Bacillus sp. HT-1 2.30.7.10.7.008 OTU 2 seqs prokMSA_id:047718 AB021189 Bacillus lentus prokMSA_id:014623 D16272 Bacillus lentus IAM 12466 . 2.30.7.10.7.009 OTU 1 seq prokMSA_id:049517 AB020194 Bacillus sp. strain TGS337 2.30.7.10.7.010 OTU 2 seqs prokMSA_id:050925 AY043085 Bacillus benzoevorans prokMSA_id:077312 AY167802 Bacillus benzoevorans strain SAFN-025 2.30.7.10.7.011 OTU 1 seq prokMSA_id:068750 AF479351 Glacial ice G200-T19 2.30.7.10.7.012 OTU 1 seq prokMSA_id:014624 Y14693 Bacillus benzoevorans str. YEO5. 2.30.7.10.7.013 OTU 1 seq prokMSA_id:071520 AY148429 Bacillus hackensackii complete 2.30.7.10.7.014 OTU 5 seqs prokMSA_id:091344 AB116128 Low G+C Gram-positive M34 strain:M34 prokMSA_id:091120 AB116129 Low G+C Gram-positive M51 strain:M51 prokMSA_id:091119 AB116144 Low G+C Gram-positive T155 strain:T155 prokMSA_id:077233 AJ535638 Bacillus galactosidasius strain LMG 17892T prokMSA_id:076722 AJ535639 Bacillus sp. strain R-6760 2.30.7.10.7.015 OTU 1 seq prokMSA_id:082173 AY080969 Staphylococcus sp. clone ckl7 2.30.7.10.7.999 poor quality 11 seqs prokMSA_id:029092 AF395313 isopod gut clone RKPsAL prokMSA_id:021244 AF395314 isopod gut clone RKPsAN prokMSA_id:043287 AF423237 soil clone 2-1 prokMSA_id:088519 AJ544777 Bacillus sp. IDA3295 isolate IDA3295 prokMSA_id:086912 AJ563528 Bacillus sp. IDA2072 isolate IDA2072 prokMSA_id:087036 AJ563535 Bacillus sp. IDA0325 isolate IDA0325 prokMSA_id:060901 AY135868 clone SG1-44 prokMSA_id:084316 AY214740 Bacilli clone BB-1-G9 prokMSA_id:082569 AY242557 Bacillus sp. clone G2516S prokMSA_id:014622 D78315 Bacillus lentus JCM 2511 . prokMSA_id:014625 X60601 Bacillus lentus NCDO 1127 . 2.30.7.10.8 B.PSEUDOMEGATERIUM_SUBGROUP 229 seqs 2.30.7.10.8.003 OTU 1 seq prokMSA_id:017518 AF252320 pPD7 2.30.7.10.8.010 OTU 6 seqs prokMSA_id:035899 AF326359 Bacillus sp. MB-1 prokMSA_id:028827 AF326362 Bacillus sp. MB-3 prokMSA_id:028572 AF326364 Bacillus sp. MB-7 prokMSA_id:027556 AJ315060 Virgibacillus picturae strain LMG 19492 T prokMSA_id:070179 AJ316297 Virgibacillus picturae strain LMG 20959 prokMSA_id:063154 AY121431 YIM-kkny4 2.30.7.10.8.011 OTU 1 seq prokMSA_id:027759 AJ011422 isolate B4 2.30.7.10.8.012 OTU 1 seq prokMSA_id:028095 AB034712 compost 4-34 2.30.7.10.8.013 OTU 1 seq prokMSA_id:035487 AF414570 clone P3IB-17 2.30.7.10.8.016 OTU 1 seq prokMSA_id:041936 AB034707 compost 4-15 2.30.7.10.8.019 OTU 1 seq prokMSA_id:070428 AF018046 I-110 2.30.7.10.8.022 OTU 1 seq prokMSA_id:063000 AF526905 Bacillus niacini strain 51-8c rrn 2.30.7.10.8.023 OTU 1 seq prokMSA_id:063143 AY121435 Amphibacillus sp. YIM-kkny10 2.30.7.10.8.026 OTU 2 seqs prokMSA_id:014652 Y07578 DA115 prokMSA_id:014631 Y07605 DA015 2.30.7.10.8.030 OTU 1 seq prokMSA_id:014633 Y07581 clone DA018. 2.30.7.10.8.031 OTU 2 seqs prokMSA_id:014644 AJ132749 Bacillus IDA629 str. IDA629. prokMSA_id:014637 AJ236890 Bacillus IDA216 str. IDA216. 2.30.7.10.8.032 OTU 1 seq prokMSA_id:014638 AJ236893 Bacillus IDA624 str. IDA624. 2.30.7.10.8.034 OTU 105 seqs prokMSA_id:034978 AB021194 Bacillus niacini prokMSA_id:038524 AB074676 Low G+C Gram-positive D-N1-2A prokMSA_id:028430 AB074684 Low G+C Gram-positive D-N2-3B2 prokMSA_id:025410 AB074694 Low G+C Gram-positive D-Su1-14A prokMSA_id:046848 AB074695 Low G+C Gram-positive D-Su1-19B prokMSA_id:048606 AB074698 Low G+C Gram-positive D-Su1-21C prokMSA_id:033397 AB074699 Low G+C Gram-positive D-Su1-22 prokMSA_id:040510 AB074704 Low G+C Gram-positive D-Su1-7B prokMSA_id:041893 AB074705 Low G+C Gram-positive D-Su1-7C prokMSA_id:022330 AB074706 Low G+C Gram-positive D-Su2-10 prokMSA_id:042016 AB074748 Low G+C Gram-positive S-Su1-8A prokMSA_id:024853 AF423209 soil clone 1104-1 prokMSA_id:034585 AF423214 soil clone 1200-1 prokMSA_id:054667 AF423249 soil clone 335-1 prokMSA_id:016708 AF423300 soil clone 912-1 prokMSA_id:055269 AF519461 Bacillus fucosivorans prokMSA_id:069114 AF519466 Bacillus senegalensis strain RS6 prokMSA_id:069657 AF519467 Bacillus djibelorensis prokMSA_id:072679 AF519468 Bacillus senegalensis strain RS8 prokMSA_id:069468 AF519469 Bacillus arbutinivorans prokMSA_id:014641 AJ000981 clone DA036. prokMSA_id:014642 AJ000982 DA066 prokMSA_id:014640 AJ000983 DA134 prokMSA_id:014628 AJ001222 clone DA154. prokMSA_id:014627 AJ222833 str. 5-28. prokMSA_id:033764 AJ229178 from anoxic bulk soil clone BSV04 prokMSA_id:027496 AJ229179 from anoxic bulk soil clone BSV05 prokMSA_id:052827 AJ229180 from anoxic bulk soil clone BSV06 prokMSA_id:048416 AJ229200 from anoxic bulk soil clone BSV45 prokMSA_id:043113 AJ229201 from anoxic bulk soil clone BSV46 prokMSA_id:040603 AJ229215 from anoxic bulk soil clone BSV71 prokMSA_id:039569 AJ229221 from anoxic bulk soil clone BSV77 prokMSA_id:019733 AJ229228 from anoxic bulk soil clone BSV84 prokMSA_id:071081 AJ250056 Bacillus fumarioli strain LMG 17489 prokMSA_id:072486 AJ250057 Bacillus fumarioli strain LMG 17492 prokMSA_id:073777 AJ250058 Bacillus fumarioli strain LMG 18409 prokMSA_id:071713 AJ250059 Bacillus fumarioli strain LMG 18418 prokMSA_id:044954 AJ289202 RSa20 prokMSA_id:029974 AJ315066 Bacillus sp. 19498 prokMSA_id:072371 AJ316313 Bacillus sp. LMG 20241 strain LMG 20241 prokMSA_id:069987 AJ438295 Bacillus sp. R-10919 prokMSA_id:067645 AJ438299 Bacillus sp. R-10944 prokMSA_id:075807 AJ519636 Clostridium sp. clone Sh765B-TzT-30 prokMSA_id:081391 AJ542505 Bacillus drentensis strain LMG 21830 prokMSA_id:081056 AJ542506 Bacillus drentensis strain LMG 21831 prokMSA_id:081960 AJ542507 Bacillus bataviensis strain LMG 21832 prokMSA_id:081770 AJ542508 Bacillus bataviensis strain LMG 21833 prokMSA_id:081794 AJ542509 Bacillus vireti strain LMG 21834 prokMSA_id:082044 AJ542510 Bacillus novalis strain LMG 21835 prokMSA_id:081371 AJ542511 Bacillus novalis strain LMG 21836 prokMSA_id:081403 AJ542512 Bacillus novalis strain LMG 21837 prokMSA_id:082239 AJ542513 Bacillus soli strain LMG 21838 prokMSA_id:081120 AJ542514 Bacillus soli strain LMG 21839 prokMSA_id:082298 AJ542515 Bacillus soli strain LMG 21840 prokMSA_id:089719 AJ544775 Bacillus sp. IDA1983 isolate IDA1983 prokMSA_id:089731 AJ544783 Bacillus sp. IDA1527 isolate IDA1527 prokMSA_id:088158 AJ544784 Bacillus sp. IDA3504 isolate IDA3504 prokMSA_id:087660 AJ563486 Bacillus sp. IDA0061 isolate IDA0061 prokMSA_id:087088 AJ563487 Bacillus sp. IDA0077 isolate IDA0077 prokMSA_id:087105 AJ563488 Bacillus sp. IDA0103 isolate IDA0103 prokMSA_id:087925 AJ563492 Bacillus sp. IDA0223 isolate IDA0223 prokMSA_id:088002 AJ563493 Bacillus sp. IDA0361 isolate IDA0361 prokMSA_id:086808 AJ563495 Bacillus sp. IDA1626 isolate IDA1626 prokMSA_id:087008 AJ563497 Bacillus sp. IDA2265 isolate IDA2265 prokMSA_id:087467 AJ563498 Bacillus sp. IDA2289 isolate IDA2289 prokMSA_id:087850 AJ563499 Bacillus sp. IDA2290 isolate IDA2290 prokMSA_id:087857 AJ563500 Bacillus sp. IDA1746 isolate IDA1746 prokMSA_id:087407 AJ563501 Bacillus sp. IDA1790 isolate IDA1790 prokMSA_id:087340 AJ563502 Bacillus sp. IDA1928 isolate IDA1928 prokMSA_id:086727 AJ563503 Bacillus sp. IDA1851 isolate IDA1851 prokMSA_id:087465 AJ563504 Bacillus sp. IDA1692 isolate IDA1692 prokMSA_id:086709 AJ563505 Bacillus sp. IDA1908 isolate IDA1908 prokMSA_id:086802 AJ563506 Bacillus sp. IDA2156 isolate IDA2156 prokMSA_id:087014 AJ563507 Bacillus sp. IDA2440 isolate IDA2440 prokMSA_id:087504 AJ563508 Bacillus sp. IDA1679 isolate IDA1679 prokMSA_id:088009 AJ563509 Bacillus sp. IDA3120 isolate IDA3120 prokMSA_id:086839 AJ563510 Bacillus sp. IDA3293 isolate IDA3293 prokMSA_id:088007 AJ563511 Bacillus sp. IDA3428 isolate IDA3428 prokMSA_id:087027 AJ563512 Bacillus sp. IDA3493 isolate IDA3493 prokMSA_id:087840 AJ563517 Bacillus sp. IDA4350 isolate IDA4350 prokMSA_id:087271 AJ563519 Bacillus sp. IDA1512 isolate IDA1512 prokMSA_id:087508 AJ563520 Bacillus sp. IDA4740 isolate IDA4740 prokMSA_id:087780 AJ563521 Bacillus sp. IDA1508 isolate IDA1508 prokMSA_id:086754 AJ563522 Bacillus sp. IDA4795 isolate IDA4795 prokMSA_id:087383 AJ563523 Bacillus sp. IDA1678 isolate IDA1678 prokMSA_id:087717 AJ563530 Bacillus sp. IDA1046 isolate IDA1046 prokMSA_id:087161 AJ563531 Bacillus sp. IDA2213 isolate IDA2213 prokMSA_id:087142 AJ563532 Bacillus sp. IDA0253 isolate IDA0253 prokMSA_id:087829 AJ563533 Bacillus sp. IDA0663 isolate IDA0663 prokMSA_id:087069 AJ563534 Bacillus sp. IDA2021 isolate IDA2021 prokMSA_id:087134 AJ563536 Bacillus sp. IDA1990 isolate IDA1990 prokMSA_id:086762 AJ563538 Bacillus sp. IDA0166 isolate IDA0166 prokMSA_id:016805 AY037670 earthworm cast clone C011 prokMSA_id:046016 AY039404 Earthworm cast C20D1 prokMSA_id:077044 AY150889 Bacillaceae clone GR21 prokMSA_id:075043 AY154646 earthworm cast clone c309 prokMSA_id:077431 AY167809 Bacillus niacini strain SAFN-021 prokMSA_id:077359 AY167811 Bacillus niacini strain SAFN-019 prokMSA_id:077490 AY167817 Bacillus niacini strain SAFN-011 prokMSA_id:086175 AY214757 Bacilli clone BB-1-E9 prokMSA_id:088513 AY221608 soil clone HS9-25 prokMSA_id:014626 X77791 Bacillus pseudomegaterium ATCC 49866. prokMSA_id:016306 X99966 DA056 mark02 prokMSA_id:046286 X99967 DA001 mark03 prokMSA_id:014632 Y07580 DA011 2.30.7.10.8.035 OTU 1 seq prokMSA_id:074752 AJ295689 TzT-JG-1-2 2.30.7.10.8.036 OTU 1 seq prokMSA_id:074967 AY154569 earthworm cast clone c205 2.30.7.10.8.037 OTU 3 seqs prokMSA_id:085077 AB092856 clone:ALU14 prokMSA_id:085484 AB092872 clone:ALU30 prokMSA_id:086563 AB092873 clone:ALU31 2.30.7.10.8.038 OTU 1 seq prokMSA_id:086484 AY214824 Bacilli clone BB-2-F12F 2.30.7.10.8.039 OTU 1 seq prokMSA_id:086773 AJ563513 Bacillus sp. IDA3943 isolate IDA3943 2.30.7.10.8.040 OTU 1 seq prokMSA_id:087372 AJ563490 Bacillus sp. IDA0154 isolate IDA0154 2.30.7.10.8.041 OTU 1 seq prokMSA_id:087591 AJ563489 Bacillus sp. IDA0115 isolate IDA0115 2.30.7.10.8.042 OTU 1 seq prokMSA_id:087629 AB110415 Bacillus senegalensis 2.30.7.10.8.043 OTU 1 seq prokMSA_id:087988 AJ563494 Bacillus sp. IDA1442 isolate IDA1442 2.30.7.10.8.044 OTU 1 seq prokMSA_id:088028 AJ563491 Bacillus sp. IDA0206 isolate IDA0206 2.30.7.10.8.045 OTU 1 seq prokMSA_id:088478 AJ544779 Bacillus sp. IDA4275 isolate IDA4275 2.30.7.10.8.046 OTU 1 seq prokMSA_id:089615 AY221612 gamma clone HS9-53 2.30.7.10.8.047 OTU 1 seq prokMSA_id:089645 AJ544778 Bacillus sp. IDA4146 isolate IDA4146 2.30.7.10.8.048 OTU 2 seqs prokMSA_id:091475 AB116125 Bacillus sp. M31 strain:M31 prokMSA_id:091397 AB116138 Low G+C Gram-positive T134 strain:T134 2.30.7.10.8.999 poor quality 87 seqs prokMSA_id:022747 AB011784 low G+C gram-positive strain: G11115 prokMSA_id:040592 AB011786 low G+C gram-positive strain: G11138 prokMSA_id:018441 AB011787 low G+C gram-positive strain: G11014 prokMSA_id:044666 AB011788 low G+C gram-positive strain: G21001 prokMSA_id:037385 AB054943 Bacillus sp. 1739 prokMSA_id:031722 AF083567 Amazonian soil M29 prokMSA_id:044609 AF083573 Amazonian soil M44c prokMSA_id:017442 AF126941 prokMSA_id:042570 AF128688 soil S072 prokMSA_id:028468 AF128706 soil S0232 prokMSA_id:040699 AF128747 Soil ic04 prokMSA_id:045663 AF128749 Soil ic12 prokMSA_id:028617 AF128751 Soil ic123 prokMSA_id:033442 AF128768 Soil is147 prokMSA_id:044284 AF181916 clone 7d/1 prokMSA_id:050992 AF183149 Soil isolate KBS-EC1 prokMSA_id:043258 AF388331 clone Ac7 prokMSA_id:052026 AF392713 clone LBA2 prokMSA_id:027339 AF392714 clone LBA4 prokMSA_id:035736 AF423298 soil clone 9-1 prokMSA_id:066657 AF432239 Bacillus sp. Ellin411 prokMSA_id:065346 AF513612 clone Dpcom06 prokMSA_id:072032 AF519465 Bacillus senegalensis strain RS4 prokMSA_id:051570 AJ236892 Bacillus sp. isolate IDA234/600 prokMSA_id:014643 AJ244307 clone Riz6D. prokMSA_id:043076 AJ244319 Riz1015 prokMSA_id:016496 AJ244350 Riz1074 prokMSA_id:052730 AJ247093 Bulk7 prokMSA_id:033889 AJ247095 Bulk11 prokMSA_id:074390 AJ286725 Bacillus sp. isolate DGGE band A prokMSA_id:023439 AJ286727 Bacillus sp. isolate DGGE bands C & c prokMSA_id:074415 AJ286728 Bacillus sp. isolate DGGE bands D & d prokMSA_id:048223 AJ289205 RSa35 prokMSA_id:024912 AJ421098 clone C9-K37 prokMSA_id:071150 AJ421099 clone C9-K39 prokMSA_id:039334 AJ431279 firmicute clone 1_24 prokMSA_id:073794 AJ438296 Bacillus sp. R-10925 prokMSA_id:067644 AJ438298 Bacillus sp. R-10940 prokMSA_id:087195 AJ563496 Bacillus sp. IDA1831 isolate IDA1831 prokMSA_id:087250 AJ563514 Bacillus sp. IDA3351 isolate IDA3351 prokMSA_id:087637 AJ563515 Bacillus sp. IDA3432 isolate IDA3432 prokMSA_id:087334 AJ563516 Bacillus sp. IDA4385 isolate IDA4385 prokMSA_id:087392 AJ563518 Bacillus sp. IDA2269 isolate IDA2269 prokMSA_id:087544 AJ563524 Bacillus sp. IDA0164 isolate IDA0164 prokMSA_id:087129 AJ563525 Bacillus sp. IDA1635 isolate IDA1635 prokMSA_id:086913 AJ563526 Bacillus sp. IDA1796 isolate IDA1796 prokMSA_id:087109 AJ563527 Bacillus sp. IDA1819 isolate IDA1819 prokMSA_id:086803 AJ563529 Bacillus sp. IDA2891 isolate IDA2891 prokMSA_id:087311 AJ563537 Bacillus sp. IDA4981 isolate IDA4981 prokMSA_id:094251 AJ582594 clone M50-09 prokMSA_id:069257 AY006866 rumen prokMSA_id:019322 AY037578 soil clone S044 prokMSA_id:039727 AY037591 soil clone S059 prokMSA_id:048415 AY037690 earthworm cast clone C037 prokMSA_id:040641 AY037713 earthworm cast clone C063 prokMSA_id:039554 AY037756 earthworm cast clone C154 prokMSA_id:038646 AY039407 Soil NS2 prokMSA_id:017541 AY039410 Soil S30D1 prokMSA_id:041241 AY039414 Soil S57D1 prokMSA_id:063754 AY114166 Bacillus sp. 010502 prokMSA_id:063046 AY122298 Denitrifying SA1 prokMSA_id:063044 AY122299 Denitrifying OA1 prokMSA_id:055304 AY122300 Denitrifying PA1 prokMSA_id:063042 AY122301 Denitrifying RA1 prokMSA_id:063040 AY122305 Denitrifying QA1 prokMSA_id:063032 AY122315 Denitrifying UL prokMSA_id:063029 AY122320 Denitrifying NA1 prokMSA_id:072985 AY143723 Bacillus sp. clone P39 prokMSA_id:078685 AY178858 Bacillus sp. B38 prokMSA_id:086431 AY214742 Bacilli clone BB-1-G6 prokMSA_id:082912 AY214752 Bacilli clone BB-1-F4 prokMSA_id:083621 AY214769 Bacilli clone BB-1-D5 prokMSA_id:085956 AY214829 Bacilli clone BB-2-G12F prokMSA_id:084727 AY242552 Bacillus sp. clone G3516S prokMSA_id:084156 AY242555 Bacillus sp. clone G2316S prokMSA_id:085591 AY242556 Bacillus sp. clone G2416S prokMSA_id:085894 AY242558 Bacillus sp. clone G2616S prokMSA_id:086518 AY242566 Bacillus sp. clone G31216S prokMSA_id:082608 AY242567 Bacillus sp. clone G1616S prokMSA_id:093208 AY357979 Bacillus sp. cEV40 prokMSA_id:014629 D84560 str. S21001. prokMSA_id:014630 D84565 str. S21018. prokMSA_id:014634 U68660 clone P29. prokMSA_id:014635 U68663 clone P35. prokMSA_id:014636 U68676 clone P50. prokMSA_id:014639 U68688 clone P72. prokMSA_id:073117 Y13417 strain mr31F 2.30.7.10.9 B.FIRMUS_SUBGROUP 67 seqs 2.30.7.10.9.001 OTU 1 seq prokMSA_id:017006 AF234863 Bacillus sp. FO-092 2.30.7.10.9.003 OTU 2 seqs prokMSA_id:042097 AB034708 compost 4-20 prokMSA_id:022904 AB034709 compost 4-21 2.30.7.10.9.004 OTU 1 seq prokMSA_id:022928 AF286486 Bacillus sp. VAN35 2.30.7.10.9.008 OTU 1 seq prokMSA_id:026443 AJ229207 from anoxic bulk soil clone BSV55 2.30.7.10.9.009 OTU 2 seqs prokMSA_id:028627 AF281158 Bacillus kangii prokMSA_id:014649 D88778 Bacillus sp. str. DSK25. 2.30.7.10.9.010 OTU 1 seq prokMSA_id:046942 AB049939 Thermoactinomyces kribbensis 2.30.7.10.9.011 OTU 1 seq prokMSA_id:061848 AF449262 clone R76-B150 2.30.7.10.9.014 OTU 1 seq prokMSA_id:014653 AF154080 clone BPC043. 2.30.7.10.9.016 OTU 28 seqs prokMSA_id:014656 AF071856 Bacillus 171544 str. 171544. prokMSA_id:014654 AF154081 clone BPC060. prokMSA_id:014655 AF154082 clone BPC094. prokMSA_id:028181 AF221061 Bacillus sp. YKJ-10 prokMSA_id:051532 AF221062 Bacillus sp. YKJ-11 prokMSA_id:027557 AF326363 Bacillus sp. MB-5 prokMSA_id:021215 AF326366 Bacillus sp. PL-12 prokMSA_id:028047 AF326367 Bacillus sp. PL-16 prokMSA_id:069993 AF326369 Bacillus sp. PL-26 prokMSA_id:074232 AF326371 Bacillus sp. PL-7 prokMSA_id:052616 AF348729 Low G+C Gram-positive MPD-62 prokMSA_id:035184 AF348731 Low G+C Gram-positive MPD-67 prokMSA_id:024811 AF423263 soil clone 432-1 prokMSA_id:024269 AF423299 soil clone 911-1 prokMSA_id:062989 AF526919 Bacillus firmus strain 10v2 rrn prokMSA_id:029853 AJ011368 clone D11 OTU L prokMSA_id:014658 AJ229238 Bacillus SB45 str. SB45. prokMSA_id:046433 AJ295684 IrT-RS2 prokMSA_id:023860 AJ315064 Bacillus sp. 19496 prokMSA_id:078276 AJ491843 Bacillus firmus strain D1 prokMSA_id:085211 AJ509006 Bacillus sp. 6160m-C1 isolate 6160m-C1 prokMSA_id:083941 AJ509007 Bacillus firmus isolate 5695m-D2 prokMSA_id:067863 AY082367 Bacillus sp. clone DGG2 prokMSA_id:086384 AY241450 Bacillus sp. UST020129-017 prokMSA_id:091142 AY345482 K2-83 prokMSA_id:095763 AY378233 Glacial ice MS-T10-04 prokMSA_id:014647 D16268 Bacillus firmus IAM 12464. prokMSA_id:014646 X60616 Bacillus firmus NCIMB 9366 . 2.30.7.10.9.018 OTU 5 seqs prokMSA_id:023280 AB021190 Bacillus marinus prokMSA_id:078625 AB094472 Bacillus sp. 2216.25.27 prokMSA_id:056298 AF530155 Marinibacillus marinus prokMSA_id:014648 AJ237708 Bacillus marinus DSM 1297. prokMSA_id:079732 AY190535 Marinibacillus campisalis 2.30.7.10.9.019 OTU 1 seq prokMSA_id:085875 AB092874 clone:ALU32 2.30.7.10.9.999 poor quality 23 seqs prokMSA_id:014650 AF156309 str. NRRLB-14906. prokMSA_id:014651 AF156313 str. NRRLB-14911. prokMSA_id:070528 AF228798 Bacillus sp. Domas clone A4 prokMSA_id:024457 AF261818 manure pit P610 prokMSA_id:071637 AF286484 Bacillus sp. VAN23 prokMSA_id:046015 AF332385 Bacillus sp. B5 prokMSA_id:048076 AF395322 isopod gut clone RKpsBD prokMSA_id:038636 AF423232 soil clone 154-1 prokMSA_id:048664 AF427932 clone 4G prokMSA_id:067202 AF497258 Bacillus sp. BacB12 prokMSA_id:056615 AF530994 Low G+C Gram-positive wo47 prokMSA_id:029301 AJ279498 Benzene-decomposing S18 strain S18 prokMSA_id:034161 AJ344525 Bacillus marinus strain MBT10 prokMSA_id:097311 AJ510038 clone BH-1 prokMSA_id:076322 AJ519638 Clostridium sp. clone Sh765B-TzT-70 prokMSA_id:083984 AY241448 Bacillus sp. UST020129-025 prokMSA_id:090522 AY307361 Bacillus sp. I17 prokMSA_id:091938 AY345357 R5B prokMSA_id:093114 AY357896 Bacillus firmus strain NRL-CB12 prokMSA_id:014657 D50612 Bacillus sp. str. Baikal-1. prokMSA_id:014645 D78314 Bacillus firmus JCM 2512 . prokMSA_id:072900 U78936 low G+C gram-positive prokMSA_id:031192 U78938 low G+C gram-positive 2.30.7.10.10 B.CIRCULANS_SUBGROUP 20 seqs 2.30.7.10.10.003 OTU 4 seqs prokMSA_id:059264 AF540984 Bacillus circulans prokMSA_id:017345 AJ011423 isolate B5 prokMSA_id:046961 AY043084 Bacillus circulans prokMSA_id:091798 AY345475 K34 2.30.7.10.10.004 OTU 2 seqs prokMSA_id:077545 AY167808 Bacillus benzoevorans strain SAFN-024 prokMSA_id:014659 X60611 Bacillus benzoevorans NCIMB 12555 . 2.30.7.10.10.999 poor quality 14 seqs prokMSA_id:050449 AF083570 Amazonian soil M37b prokMSA_id:022574 AF114719 Bacillus sp. m38b prokMSA_id:023895 AF388326 clone Ac11 prokMSA_id:044136 AF423256 soil clone 38-1 prokMSA_id:016798 AF423270 soil clone 511-1 prokMSA_id:034899 AJ247097 Bulk15 prokMSA_id:044369 AJ247106 Riz77 prokMSA_id:053275 AJ247107 Riz78 prokMSA_id:026250 AJ247110 Riz713 prokMSA_id:018513 AJ247111 Riz714 prokMSA_id:014660 D78311 Bacillus benzoevorans DSM 5391 . prokMSA_id:014663 D78312 Bacillus circulans IAM 12462 . prokMSA_id:014662 NONE Bacillus circulans ATCC 4513 . prokMSA_id:014661 X60613 Bacillus circulans NCDO 1775 . 2.30.7.10.11 B.SIMPLEX_SUBGROUP 89 seqs 2.30.7.10.11.003 OTU 32 seqs prokMSA_id:050445 AB016270 Bacillus sp. strain NIBH P3M26 complete prokMSA_id:052613 AB021195 Bacillus psychrosaccharolyticus prokMSA_id:014668 AF157696 Bacillus macroides str. dhr2. prokMSA_id:031293 AF423217 soil clone 1296-1 prokMSA_id:045468 AF441729 Bacillus sp. Kaza-34 prokMSA_id:068767 AF479334 Glacial ice G500K-17 prokMSA_id:068732 AF479370 Glacial ice SB100-8-1-1 prokMSA_id:068730 AF479374 Glacial ice SB150-2A2 prokMSA_id:065513 AF501351 Bacillus macroides strain HAMBI2395 prokMSA_id:065500 AF501367 Bacillus macroides strain HAMBI2406 prokMSA_id:055911 AF506058 Bacillus sp. LCSAOTU8 prokMSA_id:051045 AJ297717 Bacillus sp. isolate P51-5 prokMSA_id:052516 AJ297718 Bacillus sp. isolate P53-2 prokMSA_id:033158 AJ315057 Bacillus sp. 19489 prokMSA_id:072962 AJ315059 Bacillus sp. 19491 prokMSA_id:073022 AJ315062 Bacillus sp. 19494 prokMSA_id:026376 AJ316308 Bacillus sp. LMG 21002 strain LMG 21002 prokMSA_id:046809 AJ316309 Bacillus sp. LMG 20238 strain LMG 20238 prokMSA_id:068488 AJ439078 Bacillus simplex strain DSM 1321T prokMSA_id:064279 AJ491708 Bacillus macroides strain P4 prokMSA_id:025387 AY030319 Bacillus macroides strain JPL-4 prokMSA_id:071264 AY030324 Bacillus macroides strain KL-009 prokMSA_id:077384 AY167822 Bacillus macroides strain SAFN-005 prokMSA_id:075028 AY172987 Bacillus sp. 'kanghwensis' prokMSA_id:082125 AY237407 Bacillus sp. HJ8 prokMSA_id:081206 AY237408 Bacillus sp. HJ16 prokMSA_id:092154 AY359822 Bacillus sp. clone cEIII4 prokMSA_id:092690 AY359851 Bacillus sp. clone cEIII60 prokMSA_id:097894 AY378216 Glacial ice ML-A12 prokMSA_id:097016 AY378248 Glacial ice MS-T23-09 prokMSA_id:097726 AY378279 Permafrost DT-IIF30 prokMSA_id:014666 X70312 Bacillus macroides NCDO 1661. 2.30.7.10.11.004 OTU 1 seq prokMSA_id:026538 AB074750 Low G+C Gram-positive S-Su2-18 2.30.7.10.11.005 OTU 1 seq prokMSA_id:065846 AF507482 soil clone S060 2.30.7.10.11.006 OTU 1 seq prokMSA_id:066788 AF500315 Bacillus sp. PC6 2.30.7.10.11.007 OTU 1 seq prokMSA_id:014667 AF013547 unnamed organism. 2.30.7.10.11.008 OTU 1 seq prokMSA_id:014669 Y07574 DA032 2.30.7.10.11.009 OTU 1 seq prokMSA_id:075255 AY150866 Bacillaceae clone glen99_20 2.30.7.10.11.999 poor quality 51 seqs prokMSA_id:070457 AF240144 Grassland soil TSA-19 prokMSA_id:026798 AF315404 Forest soil AC03 prokMSA_id:028057 AF315408 Forest soil YC06 prokMSA_id:052201 AF388357 clone Ac52 prokMSA_id:040057 AF406673 Bacillus macroides strain B3 prokMSA_id:022865 AF423204 soil clone 10-1 prokMSA_id:064583 AF467391 CFB group clone 1524 prokMSA_id:067203 AF497255 Bacillus sp. BacB9 prokMSA_id:073528 AF501337 Bacillus macroides strain HAMBI2375 prokMSA_id:065865 AF507461 soil clone S0103 prokMSA_id:043559 AJ244313 Riz103 prokMSA_id:024520 AJ244324 Riz1025 prokMSA_id:019585 AJ244354 Riz1078 prokMSA_id:036835 AJ244358 Riz1083 prokMSA_id:061786 AJ244684 Bacillus sp. V4.BE.11 prokMSA_id:034768 AJ286726 Bacillus sp. isolate DGGE bands B & b prokMSA_id:069981 AJ289970 isolate CBM5-49 prokMSA_id:017085 AJ295377 Rape rhizosphere cse079 prokMSA_id:073269 AJ316306 Bacillus sp. LMG 21004 strain LMG 21004 prokMSA_id:045245 AJ316307 Bacillus sp. LMG 21003 strain LMG 21003 prokMSA_id:071060 AJ316321 Bacillus sp. LMG 20248 strain LMG 20248 prokMSA_id:076042 AJ428135 isolate band ns-b2 prokMSA_id:064716 AJ489357 Bacillus sp. Lgg15.1 strain Lgg15.1 prokMSA_id:098734 AJ510042 clone BH-7 prokMSA_id:097504 AJ510043 clone BH-8 prokMSA_id:075415 AJ517827 Bacillus sp. ZS50 strain ZS50 prokMSA_id:086876 AJ561140 Bacillus sp. clone ANT-RB 04 prokMSA_id:073347 AY030323 Bacillus macroides strain KL-002 prokMSA_id:056128 AY043541 Bacillus sp. 4H2.A2 prokMSA_id:061647 AY043542 Bacillus sp. 1S2.E9 prokMSA_id:056353 AY043547 Forest soil firmicute 3S2.A8 prokMSA_id:061642 AY043548 Forest soil 3S2.A12 prokMSA_id:069853 AY044088 Bacillus sp. C2 prokMSA_id:072797 AY072260 Bacillus sp. YC02 prokMSA_id:071696 AY072261 Bacillus sp. YC03 prokMSA_id:025398 AY072262 Bacillus sp. YC08 prokMSA_id:086644 AY092229 clone BI128 prokMSA_id:069749 AY143776 Bacillus sp. clone Pr27 prokMSA_id:082609 AY214807 Bacilli clone BB-2-G2R prokMSA_id:083851 AY242541 Bacillus sp. clone A1816S prokMSA_id:088823 AY307370 Bacillus sp. N79 prokMSA_id:094945 AY321537 Marine 13724 prokMSA_id:096682 AY378189 Extreme arid zone HX-IIF14 prokMSA_id:050101 U31481 low G+C gram-positive RS21 rrs prokMSA_id:036739 U31482 low G+C gram-positive RS21a rrs prokMSA_id:051454 U31488 low G+C gram-positive RS5 rrs prokMSA_id:014671 U39933 Bacillus simplex str. ZAN-044. prokMSA_id:014665 X60626 Bacillus maroccanus NCIMB 10500. prokMSA_id:014664 X60635 Bacillus psychrosaccharolyticus ATCC 23296 . prokMSA_id:014670 X60638 Bacillus simplex DSM 1321 . prokMSA_id:038921 Y15049 Bacillus macroides strain TC47-5 2.30.7.10.12 B.MEGATERIUM_SUBGROUP 128 seqs 2.30.7.10.12.006 OTU 1 seq prokMSA_id:041058 AF332544 Bacillus megaterium isolate B70 2.30.7.10.12.008 OTU 65 seqs prokMSA_id:052825 AB021185 Bacillus flexus prokMSA_id:014675 AB022310 Bacillus megaterium str. MB1. prokMSA_id:023021 AB066338 Bacillus sp. No.61 prokMSA_id:036437 AB066339 Bacillus sp. No.44 prokMSA_id:017758 AB066344 Bacillus sp. No.51 prokMSA_id:036736 AB066345 Bacillus sp. No.54 prokMSA_id:020365 AB066347 Bacillus sp. No.49 prokMSA_id:050633 AB074673 Low G+C Gram-positive D-N1-1B prokMSA_id:038740 AB074674 Low G+C Gram-positive D-N1-1C prokMSA_id:020055 AB074675 Low G+C Gram-positive D-N1-1D prokMSA_id:030444 AB074697 Low G+C Gram-positive D-Su1-21B prokMSA_id:050736 AB074721 Low G+C Gram-positive S-N0-17C prokMSA_id:095770 AB114265 Bacillus sp. Kas107-3 prokMSA_id:081816 AF142677 Bacillus megaterium plasmid pBM400 complete prokMSA_id:029536 AF217809 Bacillus sp. KYJ963 prokMSA_id:037276 AF228797 Bacillus sp. Domas clone A5 prokMSA_id:027227 AF286480 Bacillus sp. VAN12 prokMSA_id:047700 AF323260 Gram positive B4P-1B prokMSA_id:048235 AF323264 Gram positive W6G-1 prokMSA_id:070648 AF423213 soil clone 1175-1 prokMSA_id:023952 AF423258 soil clone 408-1 prokMSA_id:036408 AF423287 soil clone 716-1 prokMSA_id:031967 AF427153 Bacillus sp. PAR4 prokMSA_id:068766 AF479335 Glacial ice G500K-18 prokMSA_id:068388 AF487787 Bacillus sp. RZ-174 prokMSA_id:068387 AF487790 Bacillus sp. RZ-218 prokMSA_id:068380 AF487793 Bacillus sp. RZ-259 prokMSA_id:056000 AF513963 Bacillaceae clone PH-B53N prokMSA_id:062988 AF526918 Bacillus megaterium strain 25hs1 rrn prokMSA_id:050140 AJ011421 isolate B3 prokMSA_id:049480 AJ011425 isolate B7 prokMSA_id:035947 AJ252571 Agricultural soil isolate SI-1 prokMSA_id:028208 AJ315065 Bacillus sp. 19497 prokMSA_id:074302 AJ316310 Bacillus sp. LMG 20240 strain LMG 20240 prokMSA_id:078046 AJ491841 Bacillus megaterium strain C1 prokMSA_id:085097 AJ509005 Bacillus megaterium isolate 7636-C1 prokMSA_id:082893 AJ550461 Bacillus flexus prokMSA_id:083730 AJ550462 Bacillus megaterium prokMSA_id:087224 AJ563600 Bacillus flexus strain B14 prokMSA_id:033074 AY030336 Bacillus megaterium strain KL-181 prokMSA_id:022479 AY030338 Bacillus megaterium strain KL-197 prokMSA_id:030509 AY037703 earthworm cast clone C052 prokMSA_id:060442 AY131222 Bacillus sp. Fa29 prokMSA_id:071163 AY144451 Bacillus megaterium prokMSA_id:076257 AY150915 clone WYO3bC prokMSA_id:075093 AY154585 earthworm cast clone c228 prokMSA_id:078085 AY159884 Bacillus sp. 98TH11316 prokMSA_id:077353 AY167803 Bacillus megaterium strain SAFN-040 prokMSA_id:077415 AY167813 Bacillus megaterium strain SAFN-017 prokMSA_id:077354 AY167824 Bacillus megaterium strain SAFN-002 prokMSA_id:077319 AY167861 Bacillus megaterium strain SAFR-040 prokMSA_id:077310 AY167862 Bacillus megaterium strain SAFR-038 prokMSA_id:077554 AY167865 Bacillus megaterium strain SAFR-011 prokMSA_id:091210 AY345424 K22A prokMSA_id:091908 AY345432 K21A prokMSA_id:091907 AY345485 K2-79 prokMSA_id:095154 AY373358 Bacillus megaterium strain c5 prokMSA_id:094405 AY373360 Bacillus megaterium strain g1 prokMSA_id:097672 AY376876 Bacillus sp. M4 prokMSA_id:095880 AY394867 Bacillus sp. EPR 9 prokMSA_id:097150 AY422986 Bacillus flexus prokMSA_id:014673 D16273 Bacillus megaterium IAM 13418 . prokMSA_id:014678 D78478 Bacillus simplex DSM 1321 . prokMSA_id:081504 NC_004604 Bacillus megaterium plasmid pBM400 complete prokMSA_id:071294 X91428 sp. clone group A5g 2.30.7.10.12.009 OTU 1 seq prokMSA_id:075978 AY169819 Bacillus funiculus strain NK37.3 2.30.7.10.12.999 poor quality 61 seqs prokMSA_id:016539 AB011789 low G+C gram-positive strain: G21008 prokMSA_id:024735 AB048255 Bacillus sp. M1-19 prokMSA_id:074781 AB054936 Bacillus sp. 1732a prokMSA_id:095815 AB079793 Oil-susceptible OSB15 prokMSA_id:096677 AB079797 Oil-susceptible OSB74 prokMSA_id:068631 AB081825 seuence clone:C-02 prokMSA_id:071709 AB081829 seuence clone:D-03 prokMSA_id:097996 AB114271 Bacillus sp. Kas201-4 prokMSA_id:052012 AF010118 prokMSA_id:029769 AF128758 Soil is06 prokMSA_id:024623 AF128761 Soil is111 prokMSA_id:014674 AF156306 str. NRRLB-14910. prokMSA_id:016900 AF204107 Bacillus megaterium prokMSA_id:040755 AF226207 maize root Zmrc160 prokMSA_id:045193 AF247490 Bacillus sp. A6.3 prokMSA_id:071545 AF311995 Bacillus megaterium mxH12 prokMSA_id:054188 AF333557 Bacillus sp. NW-Sp3BO prokMSA_id:022949 AF355771 Bacillus sp. RS1 prokMSA_id:071052 AF406671 Bacillus megaterium strain B1 prokMSA_id:017156 AF423226 soil clone 14-1 prokMSA_id:048677 AF423272 soil clone 513-1 prokMSA_id:068382 AF487789 Bacillus sp. RZ-213 prokMSA_id:067208 AF497251 Bacillus sp. BacB5 prokMSA_id:067206 AF497252 Bacillus sp. BacB6 prokMSA_id:065835 AF507496 soil clone S0111 prokMSA_id:076296 AF539653 Bacillus sp. Ni12 prokMSA_id:017179 AJ252572 Agricultural soil isolate SI-2 prokMSA_id:052845 AJ252577 Agricultural soil isolate SI-10 prokMSA_id:020338 AJ252585 Rhizosphere soil isolate RSI-18 prokMSA_id:045196 AJ271044 Marine S7 strain S7 prokMSA_id:073989 AJ299568 Bacillus megaterium isolate CZ269b prokMSA_id:029365 AJ400582 Bacillus sp. LMG-19423 prokMSA_id:064731 AJ489341 Bacillus sp. Lgg5.11 strain Lgg5.11 prokMSA_id:064689 AJ489383 Bacillus sp. Lgg20.12 strain Lgg20.12 prokMSA_id:064691 AJ489384 Bacillus sp. Lgg20.13 strain Lgg20.13 prokMSA_id:056417 AJ518426 clone Neu4P3-28 prokMSA_id:078957 AJ536423 Bacillus megaterium isolate 1:1 536BP prokMSA_id:078982 AJ536424 Bacillus megaterium isolate 1:1 612BP prokMSA_id:096858 AJ586048 Bacillus danangensis strain BDN6 prokMSA_id:041614 AY039401 Earthworm burrow B5D3 prokMSA_id:028788 AY039412 Soil S52D1 prokMSA_id:017786 AY039820 Bacillus megaterium strain jshs19 prokMSA_id:085104 AY092231 clone BI95 prokMSA_id:063538 AY117600 Bacillus sp. DV41 prokMSA_id:063537 AY117601 Bacillus sp. DV28 prokMSA_id:062233 AY124483 S5-48 prokMSA_id:083303 AY214770 Bacilli clone BB-1-D4 prokMSA_id:083609 AY242540 Bacillus sp. clone A1716S prokMSA_id:085292 AY242560 Bacillus sp. clone G21016S prokMSA_id:083636 AY242564 Bacillus sp. clone A3716S prokMSA_id:083095 AY242570 Bacillus sp. clone G1716S prokMSA_id:084581 AY254571 Bacillus sp. A1 prokMSA_id:091319 AY266437 Marine SIMO-1596 prokMSA_id:086791 AY269865 Bacillus sp. 22003 prokMSA_id:086799 AY278933 Bacillus megaterium prokMSA_id:090642 AY289474 soil clone ABS-17 prokMSA_id:089853 AY307367 Bacillus sp. M29 prokMSA_id:014676 D84570 Bacillus sp. str. S21032. prokMSA_id:014672 X60629 Bacillus megaterium DSM 32 . prokMSA_id:014677 X91428 clone A5g. prokMSA_id:045406 Y15052 Bacillus megaterium strain MK64-1 2.30.7.11 B.SUBTILIS_GROUP 788 seqs 2.30.7.11.1 B.COHNII_SUBGROUP 74 seqs 2.30.7.11.1.001 OTU 1 seq prokMSA_id:020088 AJ316317 Bacillus sp. LMG 20243 strain LMG 20243 2.30.7.11.1.003 OTU 1 seq prokMSA_id:023879 AF348730 Low G+C Gram-positive MPD-63 2.30.7.11.1.004 OTU 1 seq prokMSA_id:024691 AF423203 soil clone 1005-1 2.30.7.11.1.005 OTU 1 seq prokMSA_id:026043 AB021193 Bacillus naganoensis 2.30.7.11.1.006 OTU 8 seqs prokMSA_id:014683 AB023412 Bacillus cohnii str. YN-2000. prokMSA_id:029621 AB043849 Bacillus sp. D6 prokMSA_id:031965 AB043861 Bacillus sp. 199 prokMSA_id:053608 AB055094 Bacillus sp. D6 prokMSA_id:026501 AB055095 Bacillus sp. Y prokMSA_id:029984 AB055096 Bacillus sp. SD521 prokMSA_id:014682 AF140014 Bacillus cohnii str. ML-A10. prokMSA_id:014680 X76437 Bacillus cohnii DSM 6307 . 2.30.7.11.1.007 OTU 1 seq prokMSA_id:029074 AJ408242 equine intestinal sp. PL35 clone PL35 2.30.7.11.1.008 OTU 1 seq prokMSA_id:030044 AF423230 soil clone 1448-1 2.30.7.11.1.009 OTU 5 seqs prokMSA_id:073915 AB062678 Bacillus sp. MK03 prokMSA_id:049305 AF227833 str. 31284 prokMSA_id:042246 AF227852 Bacillus sp. 82352 prokMSA_id:055982 AF479330 Glacial ice G500K-19 prokMSA_id:075224 AJ519635 Clostridium sp. clone Sh765B-TzT-27 2.30.7.11.1.011 OTU 10 seqs prokMSA_id:031425 AB043862 Bacillus sp. KX6 prokMSA_id:042189 AB043865 Bacillus horikoshii prokMSA_id:041217 AB055093 Bacillus sp. KSM-KP43 prokMSA_id:045974 AB055097 Bacillus sp. NCIB12289 prokMSA_id:021551 AF343922 Bacillus sp. NBF1 prokMSA_id:020334 AF343954 Bacillus sp. NBF33 prokMSA_id:068751 AF479350 Glacial ice G200-T16 prokMSA_id:083070 AJ550460 Bacillus horikoshii prokMSA_id:091782 AY345487 K2-77 prokMSA_id:014679 X76447 Bacillus sp. DSM 8723. 2.30.7.11.1.012 OTU 4 seqs prokMSA_id:014684 AB002642 str. HTA437. prokMSA_id:014685 AB002643 str. HTA506. prokMSA_id:032127 AB074703 Low G+C Gram-positive D-Su1-6B prokMSA_id:096883 AY422984 Bacillus sp. R-6782 2.30.7.11.1.013 OTU 1 seq prokMSA_id:072071 AJ276809 Bacillus sp. strain LMG-19415 2.30.7.11.1.014 OTU 1 seq prokMSA_id:039292 AF275705 Hailaer soda lake F6 2.30.7.11.1.015 OTU 3 seqs prokMSA_id:041580 AB049195 Bacillus sp. NAF001 prokMSA_id:076323 AY169818 Bacillus funiculus strain NK1.2 prokMSA_id:075586 AY169820 Bacillus funiculus strain NK20.3 2.30.7.11.1.016 OTU 1 seq prokMSA_id:044264 AY037665 earthworm cast clone C006 2.30.7.11.1.017 OTU 1 seq prokMSA_id:047996 AY030333 Bacillus sp. KL-152 2.30.7.11.1.018 OTU 1 seq prokMSA_id:050716 AF275711 Hailaer soda lake Z1 2.30.7.11.1.019 OTU 1 seq prokMSA_id:014681 Y07584 clone DA026. 2.30.7.11.1.020 OTU 1 seq prokMSA_id:071049 AF414443 Bacillus sp. YY complete 2.30.7.11.1.021 OTU 1 seq prokMSA_id:083539 AY241451 Bacillus sp. UST020129-022 2.30.7.11.1.022 OTU 1 seq prokMSA_id:087533 AY278907 Bacillus sp. T5-12 2.30.7.11.1.023 OTU 1 seq prokMSA_id:088788 AJ551329 Bacillus gelatini strain LMG 21880T 2.30.7.11.1.024 OTU 1 seq prokMSA_id:091197 AY345429 K2-24 2.30.7.11.1.025 OTU 1 seq prokMSA_id:091002 AY345455 K93 2.30.7.11.1.026 OTU 1 seq prokMSA_id:092090 AY359848 clone cEIII57 2.30.7.11.1.027 OTU 1 seq prokMSA_id:094711 AJ583158 Bacillus bengalicus strain Sd/3T 2.30.7.11.1.028 OTU 1 seq prokMSA_id:094983 AY373018 Bacillus sp. DIT030428 2.30.7.11.1.999 poor quality 23 seqs prokMSA_id:050586 AB011782 low G+C gram-positive strain: G11006 prokMSA_id:047918 AB054935 Bacillus sp. 1735b prokMSA_id:042427 AB054937 Bacillus sp. 1730 prokMSA_id:040071 AF009999 prokMSA_id:044592 AF335258 Bacillus sp. LS-6C prokMSA_id:050720 AF335261 Bacillus sp. LS-9C prokMSA_id:046903 AF335262 Bacillus sp. LS-10C prokMSA_id:020717 AF369643 Bacillus horikoshii prokMSA_id:030100 AF423238 soil clone 21-1 prokMSA_id:068763 AF479338 Glacial ice G500K-9 prokMSA_id:064522 AF517528 Bacillus sp. RiMSX30 prokMSA_id:064521 AF517529 Bacillus sp. PjMSX1 prokMSA_id:064520 AF517530 Bacillus sp. BnMSX19 prokMSA_id:016456 AJ247103 Riz72 prokMSA_id:026489 AJ247104 Riz74 prokMSA_id:072540 AJ400580 Bacillus sp. LMG-19413 prokMSA_id:041052 AJ400583 Bacillus sp. LMG-19422 prokMSA_id:046547 AY039821 Bacillus sp. jshs2 prokMSA_id:076243 AY159151 MF_isolate_1 prokMSA_id:086506 AY214837 Bacilli clone BB-2-F10F prokMSA_id:092899 AY357904 Bacillus sp. NRL-TS24 prokMSA_id:092860 AY357908 Bacillus sp. NRL-SS32 prokMSA_id:014686 X60615 Bacillus fastidiosus DSM 91 . 2.30.7.11.2 EXG.ACETYLICUM_SUBGROUP 82 seqs 2.30.7.11.2.001 OTU 1 seq prokMSA_id:018919 AJ252709 Potato plant root clone RC-III-8 2.30.7.11.2.003 OTU 1 seq prokMSA_id:023156 AF422675 clone d152 2.30.7.11.2.004 OTU 1 seq prokMSA_id:024190 AF465380 Gram-positive UST991130-026 2.30.7.11.2.008 OTU 1 seq prokMSA_id:026493 AF269020 NoosaAW69 2.30.7.11.2.009 OTU 2 seqs prokMSA_id:028796 AF269017 NoosaAW12 prokMSA_id:071763 AF269021 NoosaAW79 2.30.7.11.2.010 OTU 1 seq prokMSA_id:029374 AF269026 NoosaAW93 2.30.7.11.2.011 OTU 2 seqs prokMSA_id:052292 AF269013 NoosaAW57 prokMSA_id:029825 AF269015 NoosaAW16 2.30.7.11.2.017 OTU 1 seq prokMSA_id:034290 AF269008 TM7LH17 2.30.7.11.2.019 OTU 13 seqs prokMSA_id:014695 AF029046 clone SB-22. prokMSA_id:014693 AF050592 clone WFeA1-16. prokMSA_id:040417 AF227839 str. 61610 prokMSA_id:048885 AF275715 Hailaer soda lake Z8 prokMSA_id:030620 AF321049 SB22/GOBB3-111 prokMSA_id:040496 AF343950 Marine NBF29 prokMSA_id:062984 AF526924 Exiguobacterium sp. clone T6-7 rrn prokMSA_id:075706 AJ518821 Exiguobacterium sp. B10 isolate B10 prokMSA_id:080916 AJ539235 FLA21 strain FLA21 prokMSA_id:081209 AY205564 Exiguobacterium sp. BTAH1 prokMSA_id:091390 AY345407 K2-67 prokMSA_id:092489 AY360351 Exiguobacterium sp. 290703/S6645SLIGO prokMSA_id:014691 X70316 Exiguobacterium aurantiacum NCDO 2321 . 2.30.7.11.2.020 OTU 1 seq prokMSA_id:044986 AF348712 low G+C Gram-positive clone MPD-16 2.30.7.11.2.021 OTU 1 seq prokMSA_id:049147 AF268997 SBR2004 2.30.7.11.2.024 OTU 1 seq prokMSA_id:063207 AF524021 clone FW73 2.30.7.11.2.025 OTU 1 seq prokMSA_id:065602 AF507796 soil clone S1241 2.30.7.11.2.026 OTU 1 seq prokMSA_id:065694 AF507689 soil clone S1197 2.30.7.11.2.027 OTU 1 seq prokMSA_id:065695 AF507688 soil clone C1105 2.30.7.11.2.028 OTU 19 seqs prokMSA_id:093416 AB105164 Exiguobacterium oxidotolerum prokMSA_id:022657 AF403718 Low G+C Gram-positive MPD-76 prokMSA_id:049585 AF406668 Exiguobacterium sp. A19 strain A19 prokMSA_id:068746 AF479360 Glacial ice SB12K-2-2 prokMSA_id:032124 AJ297437 Exiguobacterium aff. acetylicum C/C-aer/b prokMSA_id:072912 AJ344151 Exiguobacterium undae strain L2 prokMSA_id:056242 AJ491710 Exiguobacterium acetylicum strain P6 prokMSA_id:073950 AY038734 actinobacterium clone TAF-A3 prokMSA_id:032128 AY038736 actinobacterium clone TAF-A8 prokMSA_id:050347 AY038737 actinobacterium clone TAF-A176 prokMSA_id:051037 AY038738 actinobacterium clone TAF-B12 prokMSA_id:036628 AY038741 actinobacterium clone TAF-B53 prokMSA_id:049768 AY038742 actinobacterium clone TAF-B83 prokMSA_id:056081 AY078359 Exiguobacterium sp. LP15 prokMSA_id:064417 AY102908 clone BCM3S-33B prokMSA_id:091626 AY345528 W3 prokMSA_id:014687 D55730 Exiguobacterium acetylicum. prokMSA_id:014688 X70313 Exiguobacterium acetylicum NCIMB 9889 . prokMSA_id:014689 X86064 Exiguobacterium sp. 2.30.7.11.2.029 OTU 1 seq prokMSA_id:014692 AB015558 str. BD4-8. 2.30.7.11.2.030 OTU 1 seq prokMSA_id:014694 X86600 Bacillus sp. str. S2-97. 2.30.7.11.2.031 OTU 1 seq prokMSA_id:071959 AF269016 NoosaAW01 2.30.7.11.2.032 OTU 1 seq prokMSA_id:075167 AY154630 earthworm cast clone c280 2.30.7.11.2.033 OTU 4 seqs prokMSA_id:084507 AY274123 clone D113 prokMSA_id:083017 AY274155 clone D37 prokMSA_id:086567 AY274159 clone D41 prokMSA_id:086668 AY274161 clone D45 2.30.7.11.2.034 OTU 1 seq prokMSA_id:089159 AF443588 clone C-F-29 2.30.7.11.2.999 poor quality 25 seqs prokMSA_id:027510 AF357189 C113 prokMSA_id:061233 AF432668 clone NOS7.64WL prokMSA_id:067417 AF493329 clone pHS131 prokMSA_id:067419 AF493335 clone pHS139 prokMSA_id:073436 AJ132738 CHA3-116 clone CHA3-116 prokMSA_id:035916 AJ404602 US3 prokMSA_id:018371 AJ421181 clone C1-K8 prokMSA_id:021199 AJ428516 isolate B4 prokMSA_id:041201 AY037711 earthworm cast clone C061 prokMSA_id:028987 AY038735 actinobacterium clone TAF-A6 prokMSA_id:071771 AY038739 actinobacterium clone TAF-B19 prokMSA_id:048805 AY038740 actinobacterium clone TAF-B38 prokMSA_id:027345 AY047481 Exiguobacterium aurantiacum var. Colo. Road prokMSA_id:086629 AY092215 clone BM4 prokMSA_id:082592 AY092230 clone BM63 prokMSA_id:085137 AY092337 clone BM132 prokMSA_id:084526 AY092342 clone BM162 prokMSA_id:097459 AY239454 clone rc4-4 complete prokMSA_id:083058 AY241453 Exiguobacterium sp. UST020129-002 prokMSA_id:093699 AY297792 Exiguobacterium acetylicum prokMSA_id:014697 D78309 Bacillus azotoformans DSM 1046 . prokMSA_id:032921 U81668 clone vadinBB65 prokMSA_id:014696 X60609 Bacillus azotoformans ATCC 29788 . prokMSA_id:014690 Y07579 str. mark10. prokMSA_id:025553 Y15051 Exiguobacterium sp. strain TC38-2b 2.30.7.11.3 BACILLUS_AMBER_SUBGROUP 2 seqs 2.30.7.11.3.999 poor quality 2 seqs prokMSA_id:014698 NONE Bacillus sp. prokMSA_id:014699 NONE Bacillus sp. 2.30.7.11.4 B.PUMILUS_SUBGROUP 134 seqs 2.30.7.11.4.007 OTU 75 seqs prokMSA_id:014702 AB020208 Bacillus pumilus str. OM-F6. prokMSA_id:030003 AB035917 Bacillus pumilus prokMSA_id:018698 AB048252 Bacillus pumilus complete sequense strain:M1-9-1 prokMSA_id:020112 AB066229 Bacillus sp. NJ3 prokMSA_id:078259 AB098578 Bacillus pumilus prokMSA_id:090999 AB115957 Bacillus pumilus strain:KT1012 prokMSA_id:014706 AF142575 Bacillus Biosubtyl str. Biosubtyl. prokMSA_id:049034 AF234851 Bacillus pumilus strain FO-033 prokMSA_id:041068 AF234854 Bacillus pumilus strain FO-036b prokMSA_id:018224 AF234856 Bacillus pumilus strain FO-038 prokMSA_id:045678 AF270793 Bacillus subtilis N5 prokMSA_id:023057 AF275714 Hailaer soda lake Z6 prokMSA_id:048390 AF286481 Bacillus sp. VAN13 prokMSA_id:047807 AF286483 Bacillus sp. VAN22 prokMSA_id:076272 AF393657 Bacillus pumilus prokMSA_id:017740 AF447806 Bacillus pumilus A586 prokMSA_id:068765 AF479336 Glacial ice G500K-16 prokMSA_id:066790 AF500314 Bacillus sp. PB10 prokMSA_id:060383 AF513456 Bacillaceae LA10 prokMSA_id:060382 AF513457 Bacillaceae LA28 prokMSA_id:063008 AF526895 Bacillus pumilus strain 84-4c rrn prokMSA_id:056264 AF526896 Bacillus pumilus strain 84-3c rrn prokMSA_id:063006 AF526898 Bacillus pumilus strain 84-1c rrn prokMSA_id:063002 AF526902 Bacillus pumilus strain 82-2c rrn prokMSA_id:063004 AF526903 Bacillus pumilus strain 81-4c rrn prokMSA_id:062999 AF526907 Bacillus pumilus strain 51-3c rrn prokMSA_id:039910 AJ315067 Bacillus sp. 19499 prokMSA_id:055661 AJ494726 Bacillus pumilus isolate EI-24-8 prokMSA_id:063747 AJ494727 Bacillus pumilus isolate EI-24-10 prokMSA_id:063743 AJ494728 Bacillus pumilus isolate EI-25-8 prokMSA_id:063744 AJ494729 Bacillus pumilus isolate EI-26-5 prokMSA_id:063742 AJ494730 Bacillus pumilus isolate EI-26-7 prokMSA_id:063741 AJ494731 Bacillus pumilus isolate EI-26-8 prokMSA_id:063740 AJ494732 Bacillus pumilus isolate EI-31-12 prokMSA_id:063739 AJ494734 Bacillus pumilus isolate EI-44-7 prokMSA_id:079033 AJ536427 Bacillus sp. 6:4 isolate 6:4 659BP prokMSA_id:078908 AJ536428 Bacillus sp. 6:4 isolate 6:4 651BP prokMSA_id:082717 AJ550463 Bacillus pumilus prokMSA_id:093173 AJ581929 Bacillus subtilis strain 1P1-3 prokMSA_id:093912 AJ581949 Bacillus pumilus strain 2P4-11 prokMSA_id:093373 AJ581950 Bacillus pumilus strain 2P4-15 prokMSA_id:093168 AJ581961 Bacillus pumilus strain 2Pe4-10 prokMSA_id:019779 AY030327 Bacillus pumilus strain KL-052 prokMSA_id:036252 AY037673 earthworm cast clone C015 prokMSA_id:064988 AY112667 Bacillus pumilus prokMSA_id:074899 AY162960 clone ZB-Z88 prokMSA_id:075778 AY162961 clone ZB-Z98 prokMSA_id:077556 AY167879 Bacillus pumilus prokMSA_id:077440 AY167880 Bacillus pumilus prokMSA_id:077430 AY167881 Bacillus pumilus prokMSA_id:077426 AY167882 Bacillus pumilus prokMSA_id:077346 AY167883 Bacillus pumilus prokMSA_id:077445 AY167884 Bacillus pumilus prokMSA_id:077484 AY167886 Bacillus pumilus prokMSA_id:086467 AY172663 Bacillaceae HP9w prokMSA_id:083601 AY172667 Bacillaceae HP21 prokMSA_id:078969 AY177362 Bacillus sp. 71a prokMSA_id:083150 AY260859 Bacillus pumilus strain WN697 prokMSA_id:083670 AY260860 Bacillus pumilus strain WN695 prokMSA_id:082672 AY260861 Bacillus pumilus strain WN694 prokMSA_id:082886 AY260862 Bacillus pumilus strain WN693 prokMSA_id:086348 AY260863 Bacillus pumilus strain WN692 prokMSA_id:086314 AY260864 Bacillus pumilus strain WN691 prokMSA_id:086909 AY278915 Bacillus pumilus isolate T5-5 prokMSA_id:087370 AY278916 Bacillus pumilus isolate T5-6 prokMSA_id:087865 AY278918 Bacillus pumilus isolate T5-9 prokMSA_id:087794 AY282466 Marine pa-18 prokMSA_id:091226 AY294325 Bacillus pumilus prokMSA_id:088288 AY315434 Bacillus pumilus strain CC-2U5-1 prokMSA_id:091570 AY345445 KA64 prokMSA_id:094369 AY373359 Bacillus pumilus strain c10 prokMSA_id:096521 AY395013 Bacillus sp. NAB9 prokMSA_id:014700 D55731 Bacillus sp. IFO 12605. prokMSA_id:014704 X86597 Bacillus sp. str. AG-20. prokMSA_id:033317 X86599 Bacillus sp. strain S2-02 2.30.7.11.4.008 OTU 1 seq prokMSA_id:068731 AF479372 Glacial ice SB100-9-5-1 2.30.7.11.4.009 OTU 1 seq prokMSA_id:085774 AY172664 Bacillaceae HP10 2.30.7.11.4.010 OTU 1 seq prokMSA_id:091312 AY345450 KA28 2.30.7.11.4.999 poor quality 56 seqs prokMSA_id:031269 AB030929 Bacillus sp. INY4 prokMSA_id:033763 AB054939 Bacillus sp. 1195 prokMSA_id:044236 AB054940 Bacillus sp. 1108 prokMSA_id:049954 AF128759 Soil is11 prokMSA_id:014701 AF156315 str. NRRLB-14904. prokMSA_id:030871 AF260744 Bacillus pumilus strain I-137-5 prokMSA_id:029826 AF260745 Bacillus pumilus strain I-137-8 prokMSA_id:022931 AF260751 Bacillus pumilus strain FS55 prokMSA_id:048611 AF288735 Bacillus pumilus prokMSA_id:045407 AF302144 Bacillus sp. B33s prokMSA_id:029550 AF332386 Bacillus sp. B61 prokMSA_id:031355 AF423205 soil clone 102-1 prokMSA_id:044422 AF423244 soil clone 26-1 prokMSA_id:051802 AF460893 Marine SIMO-IS186 prokMSA_id:041704 AF460896 Marine SIMO-IS188 prokMSA_id:033767 AF460898 Marine SIMO-IS189 prokMSA_id:043880 AF460900 Marine SIMO-IS191 prokMSA_id:024538 AF460908 Marine SIMO-IS194 prokMSA_id:019836 AF460950 Marine SIMO-IS209 prokMSA_id:038289 AF460953 Marine SIMO-IS212 prokMSA_id:023813 AF460955 Marine SIMO-IS214 prokMSA_id:020694 AF460957 Marine SIMO-IS216 prokMSA_id:069792 AF488781 Marine firmicute n50 prokMSA_id:067210 AF497247 Bacillus sp. BacB1 prokMSA_id:067211 AF497248 Bacillus sp. BacB2 prokMSA_id:055330 AF530985 Low G+C Gram-positive wo11 prokMSA_id:026762 AJ344515 Bacillus pumilus strain SFLB5 prokMSA_id:018151 AJ344517 Bacillus pumilus strain SFLB10 prokMSA_id:066999 AJ458441 Bacillus pumilus strain NR404 prokMSA_id:064735 AJ489335 Bacillus sp. Lgg5.4 strain Lgg5.4 prokMSA_id:064723 AJ489349 Bacillus sp. Lgg10.10 strain Lgg10.10 prokMSA_id:064705 AJ489372 Bacillus sp. Lgg20.1 strain Lgg20.1 prokMSA_id:064704 AJ489373 Bacillus sp. Lgg20.2 strain Lgg20.2 prokMSA_id:063738 AJ494733 Bacillus pumilus isolate EI-38-4 prokMSA_id:063165 AJ496319 Bacillus sp. KU31 strain KU31 prokMSA_id:076170 AJ517828 Bacillus sp. ZS35 strain ZS35 prokMSA_id:093815 AJ581932 Bacillus subtilis strain 1Pe1-9 prokMSA_id:067906 AY028327 Bacillus sp. amh-4467 prokMSA_id:067905 AY028328 Bacillus sp. ES20 prokMSA_id:049667 AY039400 Earthworm burrow B6D1 prokMSA_id:033575 AY039415 Soil S76M1 prokMSA_id:056297 AY149234 Bacillus pumilus strain CC-cty prokMSA_id:057333 AY149626 Marine SIMO IS-S76-284 prokMSA_id:086577 AY242563 Bacillus sp. clone A3816S prokMSA_id:086120 AY242568 Bacillus sp. clone G31716S prokMSA_id:084734 AY242572 Bacillus sp. clone A21716S prokMSA_id:091301 AY266432 Marine SIMO-1589 prokMSA_id:087869 AY269870 Bacillus sp. 7 prokMSA_id:091190 AY337586 Bacillus pumilus CC-Ca20 prokMSA_id:095724 AY389345 Bacillus pumilus strain MK001 prokMSA_id:095734 AY390771 Bacillus pumilus prokMSA_id:095356 AY394638 Bacillus sp. clone N8-8 prokMSA_id:014708 U02894 Bacillus pumilus ATCC 72. prokMSA_id:014707 X60637 Bacillus pumilus NCDO 1766 . prokMSA_id:014703 X86596 Bacillus sp. str. AG-05. prokMSA_id:014705 X86598 Bacillus sp. str. S2-01. 2.30.7.11.5 B.SUBTILIS_SUBGROUP 496 seqs 2.30.7.11.5.004 OTU 1 seq prokMSA_id:017768 AF165188 Bacillus sp. CK4 2.30.7.11.5.012 OTU 1 seq prokMSA_id:022896 AJ277906 Bacillus subtilis strain Subtyl 2.30.7.11.5.014 OTU 1 seq prokMSA_id:032808 AF447805 Bacillus subtilis A202 2.30.7.11.5.017 OTU 1 seq prokMSA_id:037471 AJ315058 Bacillus sp. 19490 2.30.7.11.5.018 OTU 1 seq prokMSA_id:038338 AF411341 Bacillus licheniformis strain SK-1 2.30.7.11.5.027 OTU 1 seq prokMSA_id:046318 AB020195 Bacillus sp. strain TGS437 2.30.7.11.5.028 OTU 1 seq prokMSA_id:051610 AF193841 Bacillus subtilis strain NSRS89-26 2.30.7.11.5.032 OTU 257 seqs prokMSA_id:014761 AB016721 Bacillus subtilis str. BS62. prokMSA_id:014734 AB017587 Bacillus sp. str. SSA3. prokMSA_id:014741 AB017588 Bacillus sp. str. PM3. prokMSA_id:014742 AB017589 Bacillus sp. str. SS7. prokMSA_id:014743 AB017590 Bacillus sp. str. SS9. prokMSA_id:014744 AB017591 Bacillus sp. str. TKSP21. prokMSA_id:014745 AB017592 Bacillus sp. str. TKSP24. prokMSA_id:014759 AB018484 Bacillus subtilis str. OG-01-center. prokMSA_id:014720 AB018485 Bacillus subtilis str. OG-01-fringe. prokMSA_id:014760 AB018486 Bacillus subtilis ATCC 6633. prokMSA_id:014748 AB018487 Bacillus subtilis ATCC 21331. prokMSA_id:029253 AB020193 Bacillus sp. strain TGS237 prokMSA_id:033993 AB020198 Bacillus sp. strain TGS750 prokMSA_id:022295 AB020199 Bacillus sp. strain TGS850 prokMSA_id:046107 AB020200 Bacillus sp. strain TGS950 prokMSA_id:045582 AB020201 Bacillus sp. strain TGS1050 prokMSA_id:043444 AB021181 Bacillus atrophaeus prokMSA_id:025248 AB021191 Bacillus mojavensis prokMSA_id:028010 AB021198 Bacillus vallismortis prokMSA_id:020711 AB039328 Bacillus licheniformis strain:M1-1 prokMSA_id:083961 AB042061 Bacillus subtilis prokMSA_id:038471 AB050667 Bacillus sp. PP19-H3 prokMSA_id:074771 AB053351 Bacillus sp. BBK-1 prokMSA_id:040513 AB055006 Bacillus licheniformis prokMSA_id:045034 AB055007 Bacillus subtilis prokMSA_id:049509 AB055846 Bacillus sp. CH4-4 prokMSA_id:033496 AB055848 Bacillus sp. CH4-5 prokMSA_id:047166 AB055849 Bacillus sp. CH15-2 prokMSA_id:042164 AB055850 Bacillus sp. CH19-3 prokMSA_id:037662 AB055851 Bacillus sp. CH20-1 prokMSA_id:020995 AB055852 Bacillus sp. CH7-1 prokMSA_id:030531 AB055853 Bacillus sp. CH10-1 prokMSA_id:073711 AB065370 Bacillus subtilis complete prokMSA_id:036816 AB072569 Bacillus subtilis strain:CA:B1 prokMSA_id:017853 AB072570 Bacillus subtilis strain:CK:B1 prokMSA_id:037343 AB072571 Bacillus subtilis strain:KD:B1 prokMSA_id:022376 AB072572 Bacillus subtilis strain:KG:B1 prokMSA_id:022738 AB072573 Bacillus subtilis strain:JN-1 prokMSA_id:074323 AB072574 Bacillus subtilis strain:JA-1 prokMSA_id:077901 AB098574 Bacillus sp. TUT1010 prokMSA_id:087138 AB110598 Bacillus subtilis prokMSA_id:091214 AB115958 Bacillus subtilis strain:KT1002 prokMSA_id:091208 AB115959 Bacillus subtilis strain:KT1003 prokMSA_id:014713 AF008220 Bacillus subtilis. prokMSA_id:014725 AF035430 Bacillus licheniformis str. Carlsberg strain NCIMB 6816. prokMSA_id:014726 AF035431 Bacillus licheniformis str. North Carolina isolate PWD-1. prokMSA_id:023316 AF047176 Bacillus licheniformis strain TRC-18-2-a prokMSA_id:038873 AF047177 Bacillus subtilis strain TRC-4118 prokMSA_id:014746 AF058766 Bacillus subtilis str. TB11. prokMSA_id:014756 AF074970 Bacillus subtilis subsp. spizizenii NRRL B-23049. prokMSA_id:014747 AF142574 Bacillus subtilis ATCC 9799. prokMSA_id:014758 AF142577 Bacillus subtilis str. PY79. prokMSA_id:017839 AF198249 Bacillus subtilis strain LN002 prokMSA_id:024734 AF199464 Bacillus subtilis strain MK007 prokMSA_id:039932 AF204163 Bacillus licheniformis strain ATCC 53757 small subunit prokMSA_id:074705 AF204164 Bacillus licheniformis strain ATCC 12759 small subunit prokMSA_id:051297 AF204165 Bacillus licheniformis strain NCIMB 10689 small subunit prokMSA_id:079525 AF221855 Bacillus sp. JC1076 prokMSA_id:036092 AF233579 Bacillus subtilis var. chungkookjang complete prokMSA_id:044403 AF234841 Bacillus licheniformis strain FO-003 prokMSA_id:053195 AF234844 Bacillus licheniformis strain FO-017b prokMSA_id:039451 AF234845 Bacillus licheniformis strain FO-022a prokMSA_id:020533 AF234846 Bacillus licheniformis strain FO-024 prokMSA_id:020987 AF234847 Bacillus licheniformis strain FO-026 prokMSA_id:042423 AF234848 Bacillus licheniformis strain FO-028 prokMSA_id:033178 AF234849 Bacillus subtilis strain FO-029a prokMSA_id:042774 AF234850 Bacillus subtilis strain FO-032 prokMSA_id:071867 AF234852 Bacillus sp. FO-035b prokMSA_id:032682 AF234855 Bacillus licheniformis strain FO-037 prokMSA_id:031469 AF234857 Bacillus licheniformis strain FO-054 prokMSA_id:044878 AF234859 Bacillus licheniformis strain FO-074b prokMSA_id:035577 AF234862 Bacillus licheniformis strain FO-085 prokMSA_id:041451 AF252321 pPD8 prokMSA_id:054470 AF264685 Bacillus sp. MR-4 prokMSA_id:028698 AF274246 Bacillus subtilis strain B2-0 prokMSA_id:022475 AF274247 Bacillus subtilis strain B2-00 prokMSA_id:016849 AF274248 Bacillus subtilis strain C15 prokMSA_id:046379 AF276309 Bacillus licheniformis strain B prokMSA_id:026659 AF286478 Bacillus sp. VAN01 prokMSA_id:051205 AF286479 Bacillus sp. VAN04 prokMSA_id:050746 AF286482 Bacillus sp. VAN14 prokMSA_id:050400 AF287011 Bacillus subtilis strain O9 prokMSA_id:029247 AF302118 Bacillus sonorensis strain NRRL B-23154 prokMSA_id:030966 AF302119 Bacillus sonorensis strain NRRL B-23155 prokMSA_id:030814 AF302120 Bacillus sonorensis strain NRRL B-23156 prokMSA_id:039670 AF302121 Bacillus sonorensis strain NRRL B-23157 prokMSA_id:041964 AF302122 Bacillus sonorensis strain NRRL B-23158 prokMSA_id:025728 AF302123 Bacillus sonorensis strain NNRL B-23159 prokMSA_id:034751 AF302124 Bacillus sonorensis strain NRRL B-23160 prokMSA_id:022715 AF302125 Bacillus sonorensis strain NRRL B-23161 prokMSA_id:046757 AF311907 Bacillus licheniformis strain YN prokMSA_id:017774 AF318900 Bacillus subtilis strain N10 prokMSA_id:073718 AF325863 Bacillus licheniformis prokMSA_id:074659 AF326361 Bacillus sp. MB-12 prokMSA_id:023159 AF326368 Bacillus sp. PL-21 prokMSA_id:034421 AF326370 Bacillus sp. PL-30 prokMSA_id:019850 AF326372 Bacillus sp. SD-18 prokMSA_id:072894 AF326373 Bacillus sp. SG-1 prokMSA_id:031397 AF333249 Bacillus subtilis prokMSA_id:045947 AF333558 Bacillus sp. NW-Sp3Y prokMSA_id:038716 AF346494 Bacillus sp. BAC1 prokMSA_id:034060 AF346496 Bacillus sp. USC13 complete prokMSA_id:020946 AF355627 Bacillus sp. MN-003 prokMSA_id:077543 AF372616 Bacillus licheniformis strain Mo1 prokMSA_id:073877 AF387514 Bacillus licheniformis strain KL-182 prokMSA_id:038198 AF387515 Bacillus licheniformis strain KL-196 prokMSA_id:052508 AF391127 Bacillus licheniformis strain KL-164 prokMSA_id:056458 AF397062 Bacillus licheniformis AB111114 prokMSA_id:032916 AF399743 Bacillus licheniformis K-508 prokMSA_id:062519 AF399911 Bacillus subtilis subsp. endophyticus prokMSA_id:049632 AF408261 Bacillus sp. clone KL-37-1-5 prokMSA_id:072314 AF411118 Bacillus sp. Bch1 complete prokMSA_id:042085 AF419218 Bacillus licheniformis prokMSA_id:032902 AF447803 Bacillus subtilis A184 prokMSA_id:019528 AF447804 Bacillus sp. A190 prokMSA_id:024519 AF465648 Bacillus sp. YNPRH8P-2 prokMSA_id:068752 AF479349 Glacial ice G200-SD1 prokMSA_id:068748 AF479353 Glacial ice G50-TB5 prokMSA_id:068788 AF483624 Bacillus marisflavi strain TF-11 prokMSA_id:055942 AF483625 Bacillus aquaemaris strain TF-12 prokMSA_id:068386 AF487791 Bacillus sp. RZ-254 prokMSA_id:068381 AF487792 Bacillus sp. RZ-256 prokMSA_id:068699 AF489591 Bacillus amyloliquefaciens strain CMB01 prokMSA_id:058334 AF492486 Bacillus licheniformis prokMSA_id:083932 AF500205 Bacillus sp. CJ11043 prokMSA_id:066777 AF500328 Bacillus sp. PH5 prokMSA_id:060365 AF513474 Bacillaceae PH32 prokMSA_id:064682 AF516176 Bacillus licheniformis strain YW1258 prokMSA_id:063009 AF526894 Bacillus licheniformis strain 84-5c rrn prokMSA_id:062997 AF526911 Bacillus subtilis strain 42v1 rrn prokMSA_id:062993 AF526912 Bacillus subtilis strain 42hs1 rrn prokMSA_id:076861 AF539671 Bacillus sp. Ni30 prokMSA_id:057756 AF549498 Bacillus subtilis and -23S intergenic spacer complete ; and 23S prokMSA_id:070604 AH010483 Bacillus licheniformis and genes prokMSA_id:014724 AJ000648 Bacillus sp. str. GCB-2. prokMSA_id:028540 AJ224963 Pseudobacillus carolinae prokMSA_id:046003 AJ242775 Bacillus sp. S10 prokMSA_id:056054 AJ244685 Bacillus sp. V4.BE.28 prokMSA_id:070958 AJ244686 Bacillus sp. V4.BE.06 prokMSA_id:025811 AJ271045 Marine S10 strain S10 prokMSA_id:018271 AJ276351 Bacillus subtilis strain DSM10 prokMSA_id:017874 AJ277905 Bacillus subtilis strain Lactipan prokMSA_id:050052 AJ293011 Bacillus licheniformis strain EI-34-6 prokMSA_id:074129 AJ315068 Bacillus sp. 19500 prokMSA_id:069296 AJ391199 Bacillus sp. AS-38 prokMSA_id:073353 AJ438301 Bacillus sp. R-11590 prokMSA_id:065377 AJ488580 Bacillus sp. C3 strain C3 prokMSA_id:059498 AJ508358 Bacillus subtilis . isolate MBRG 1.5 prokMSA_id:055718 AJ508365 Bacillus subtilis . isolate MBRG 2.4 prokMSA_id:069383 AJ514241 Bacillus licheniformis isolate MBRG 7.1 prokMSA_id:076488 AJ518819 Bacillus licheniformis isolate B31 prokMSA_id:076748 AJ518820 Bacillus sp. B32 isolate B32 prokMSA_id:075137 AJ518822 Bacillus sonorensis isolate B4 prokMSA_id:079437 AJ539169 clone AF34 prokMSA_id:079358 AJ539174 clone AJ43 prokMSA_id:083903 AJ555893 Bacillus subtilis strain CECT 4522 prokMSA_id:089204 AJ575432 Bacillus subtilis strain CECT 36 prokMSA_id:093979 AJ581938 Bacillus licheniformis strain 2R2-15 prokMSA_id:093403 AJ581939 Bacillus subtilis strain 2R2-24 prokMSA_id:094175 AJ581940 Bacillus subtilis strain 2R3-13 prokMSA_id:093883 AJ581945 Bacillus subtilis strain 2P3-16 prokMSA_id:093757 AJ581951 Bacillus subtilis strain 2Re1-6 prokMSA_id:093814 AJ581959 Bacillus subtilis strain 2Pe3-3 prokMSA_id:093940 AJ581963 Bacillus subtilis strain 2Re4-17 prokMSA_id:014719 AL009126 Bacillus subtilis = . prokMSA_id:014752 AL009126 Bacillus subtilis =rrnW . prokMSA_id:014753 AL009126 Bacillus subtilis =rrnD . prokMSA_id:014709 AL009126 Bacillus subtilis =rrnB . prokMSA_id:014740 AL009126 Bacillus subtilis =rrnO . prokMSA_id:014732 AL009126 Bacillus subtilis =rrnJ . prokMSA_id:014728 AL009126 Bacillus subtilis =rrnI . prokMSA_id:014735 AL009126 Bacillus subtilis =rrnG . prokMSA_id:014736 AL009126 Bacillus subtilis =rrnE . prokMSA_id:014738 AL009126 Bacillus subtilis =rrnH . prokMSA_id:045517 AY017347 Bacillus licheniformis prokMSA_id:036519 AY030326 Bacillus licheniformis strain KL-047 prokMSA_id:036125 AY030328 Bacillus licheniformis strain KL-068 prokMSA_id:032365 AY030329 Bacillus mojavensis strain KL-070 prokMSA_id:027219 AY030330 Bacillus subtilis strain KL-073 prokMSA_id:038003 AY030331 Bacillus subtilis strain KL-077 prokMSA_id:040827 AY030332 Bacillus subtilis strain KL-120 prokMSA_id:046335 AY030334 Bacillus mojavensis strain KL-154 prokMSA_id:035852 AY030335 Bacillus licheniformis strain KL-176 prokMSA_id:028357 AY030337 Bacillus licheniformis strain KL-185 prokMSA_id:025131 AY030339 Bacillus mojavensis strain KL-198 prokMSA_id:038139 AY071857 Bacillus licheniformis strain PR-1 prokMSA_id:055519 AY103463 Bacillus sp. CGTase complete prokMSA_id:063981 AY114158 Bacillus subtilis prokMSA_id:055847 AY144452 Bacillus sp. 080802K1 prokMSA_id:056463 AY149235 Bacillus sp. CC-pg104 prokMSA_id:078621 AY160223 Bacillus sp. X3 prokMSA_id:076500 AY162126 Bacillus subtilis strain GA1-5 prokMSA_id:076920 AY162127 Bacillus subtilis strain HAZ2 prokMSA_id:076767 AY162128 Bacillus subtilis strain HAZ14 prokMSA_id:076813 AY162129 Bacillus subtilis strain WP1-21 prokMSA_id:076539 AY162130 Bacillus subtilis strain STB29 prokMSA_id:076151 AY162131 Bacillus subtilis strain BHP6-1 prokMSA_id:076502 AY162132 Bacillus subtilis strain MA12 prokMSA_id:074972 AY162133 Bacillus subtilis strain BZ15 prokMSA_id:075819 AY162134 Bacillus licheniformis strain GA1-17 prokMSA_id:075073 AY162135 Bacillus licheniformis strain HAZ6-17 prokMSA_id:077146 AY162136 Bacillus licheniformis strain GA8 prokMSA_id:077320 AY167806 Bacillus licheniformis strain SAFN-031 prokMSA_id:076989 AY168451 Bacillus subtilis prokMSA_id:078407 AY172513 Bacillus subtilis isolate BS-2 prokMSA_id:077829 AY172514 Bacillus subtilis isolate BS-1 prokMSA_id:078954 AY176764 Bacillus subtilis strain HJ11 prokMSA_id:078577 AY176766 Bacillus subtilis strain B2 prokMSA_id:078627 AY176768 Bacillus subtilis strain HJ19 prokMSA_id:078863 AY177361 Bacillus sp. 63 prokMSA_id:080003 AY186035 Bacillus licheniformis strain EBI1 prokMSA_id:080504 AY186036 Bacillus licheniformis strain EBI2 prokMSA_id:080772 AY186037 Bacillus sp. EBI3 prokMSA_id:079610 AY186038 Bacillus subtilis strain EBI4 prokMSA_id:079067 AY189640 low G+C Gram-positive clone EarCan113 prokMSA_id:080665 AY189745 Bacillus sp. B-2 prokMSA_id:080904 AY189749 Bacillus sp. B-6 prokMSA_id:079819 AY189750 Bacillus mojavensis prokMSA_id:082070 AY205296 Bacillus sp. CR1-2 prokMSA_id:081372 AY207468 Bacillus subtilis strain KS03 prokMSA_id:083777 AY219900 Bacillus subtilis complete prokMSA_id:084380 AY233455 Bacillus sp. B1XC prokMSA_id:086530 AY241399 Bacillus sp. UST010723-004 prokMSA_id:084840 AY260858 Bacillus subtilis strain WN696 prokMSA_id:087398 AY279207 Bacillus subtilis strain HA401 prokMSA_id:085195 AY279208 Bacillus subtilis strain IBT014 prokMSA_id:084256 AY279209 Bacillus subtilis strain IBT015 prokMSA_id:089172 AY291582 Bacillus licheniformis strain GXN151 prokMSA_id:088830 AY310301 Bacillus subtilis strain BGSC 3A23 rrnE prokMSA_id:091632 AY345501 clone W4-B28 prokMSA_id:091855 AY345521 clone W1A-D12 prokMSA_id:092081 AY345856 Bacillus sp. S14 prokMSA_id:094703 AY373362 Bacillus sp. w5 prokMSA_id:096207 AY378213 Glacial ice ML-35 prokMSA_id:096121 AY380831 Bacillus licheniformis strain BCH290703B prokMSA_id:096288 AY387583 Bacillus sp. A3-2 prokMSA_id:095563 AY395286 VA-F-7 prokMSA_id:014731 D26185 Bacillus subtilis str. 168 = . prokMSA_id:014755 D26185 Bacillus subtilis str. 168 =rrnW . prokMSA_id:014751 D26185 Bacillus subtilis str. 168 =rrnO . prokMSA_id:014749 D26185 Bacillus subtilis str. 168 =rrnJ . prokMSA_id:014710 D31739 Bacillus licheniformis str. B-6-4J. prokMSA_id:014729 D64126 Bacillus subtilis str. 168. prokMSA_id:014739 D84213 Bacillus subtilis str. 168. prokMSA_id:014737 D88802 Bacillus subtilis subsp. Marburg str. 168. prokMSA_id:014712 K00637 Bacillus subtilis. prokMSA_id:014718 K00637 Bacillus subtilis str. 168. prokMSA_id:050768 NC_000964 Bacillus subtilis complete genome prokMSA_id:029966 X00007 Bacillus subtilis 5' end of operon rrnB prokMSA_id:014727 X60646 Bacillus subtilis NCDO 1769 . prokMSA_id:014721 X68416 Bacillus licheniformis DSM 13 . prokMSA_id:014723 X81131 Bacillus sp. str. Termite isolate v. prokMSA_id:014754 Z82044 Bacillus subtilis str. 168. prokMSA_id:044167 Z99104 Bacillus subtilis complete genome section 1 of 21: from 1 to 213080 prokMSA_id:045823 Z99107 Bacillus subtilis complete genome section 4 of 21: from 611631 to 813719 prokMSA_id:052408 Z99108 Bacillus subtilis complete genome section 5 of 21: from 813670 to 1011078 prokMSA_id:073909 Z99119 Bacillus subtilis complete genome section 16 of 21: from 3013458 to 3213379 2.30.7.11.5.033 OTU 1 seq prokMSA_id:014757 AF058767 Bacillus subtilis str. A405. 2.30.7.11.5.034 OTU 1 seq prokMSA_id:069913 AF325862 Bacillus licheniformis 2.30.7.11.5.035 OTU 1 seq prokMSA_id:076212 AY162944 clone ZB-Z11 2.30.7.11.5.036 OTU 1 seq prokMSA_id:076709 AF539675 Bacillus sp. Ni34 2.30.7.11.5.037 OTU 3 seqs prokMSA_id:085978 AY172666 Bacillaceae HP17 prokMSA_id:082621 AY172668 Bacillaceae HP29o prokMSA_id:085392 AY172669 Bacillaceae HP38 2.30.7.11.5.038 OTU 1 seq prokMSA_id:084164 AY248716 Bacillus licheniformis strain A1 2.30.7.11.5.039 OTU 1 seq prokMSA_id:091686 AB073167 Bacillus sp. KSM-P358 2.30.7.11.5.999 poor quality 223 seqs prokMSA_id:033609 AB029409 4-9:2 prokMSA_id:082876 AB092795 Bacillus subtilis strain:AMM202 prokMSA_id:085399 AB092796 Bacillus subtilis strain:AMM005 prokMSA_id:084185 AB092797 Bacillus amyloliquefaciens strain:AMM203 prokMSA_id:083159 AB092798 Bacillus amyloliquefaciens strain:AMM1503 prokMSA_id:082624 AB092799 Bacillus amyloliquefaciens strain:AMM805 prokMSA_id:086339 AB092800 Bacillus amyloliquefaciens strain:AMM404 prokMSA_id:090462 AB099708 Bacillus vietnamensis prokMSA_id:091431 AB116131 Low G+C Gram-positive M53 strain:M53 prokMSA_id:033928 AF128756 Soil is02 prokMSA_id:014733 AF156310 str. NRRLB-14907. prokMSA_id:014722 AF156316 str. NRRLB-14850. prokMSA_id:025111 AF231422 Humic substances-degrading HS407 prokMSA_id:034953 AF235002 Bacillus mojavensis strain AB1 prokMSA_id:073682 AF260746 Bacillus subtilis strain 5.4 prokMSA_id:073764 AF260747 Bacillus subtilis strain I-134-15 prokMSA_id:050505 AF260750 Bacillus subtilis strain MAI-11-01-CP prokMSA_id:031280 AF276310 Bacillus licheniformis strain 421 prokMSA_id:036474 AF302143 Bacillus sp. B34d prokMSA_id:022631 AF302146 Bacillus sp. WG99m prokMSA_id:032136 AF302147 Bacillus sp. A34dm prokMSA_id:028852 AF302148 Bacillus sp. B32m prokMSA_id:029493 AF333556 Bacillus sp. NW-Sp3AS prokMSA_id:026710 AF346491 Bacillus sp. BAC2 prokMSA_id:021605 AF346492 Bacillus sp. BAC3 prokMSA_id:025624 AF406810 Bacillus subtilis prokMSA_id:033101 AF406818 Bacillus subtilis strain T2 prokMSA_id:049381 AF426469 Bacillus licheniformis prokMSA_id:041376 AF426470 Bacillus licheniformis prokMSA_id:032183 AF426473 Bacillus licheniformis prokMSA_id:022196 AF426474 Bacillus licheniformis prokMSA_id:034636 AF426475 Bacillus licheniformis prokMSA_id:039810 AF437532 clone PDSB026 prokMSA_id:048338 AF437544 clone PDSB041 prokMSA_id:022803 AF437545 clone PDSB042 prokMSA_id:023662 AF437548 clone PDSB045 prokMSA_id:019810 AF437549 clone PDSB046 prokMSA_id:049179 AF437550 clone PDSB047 prokMSA_id:036405 AF437551 clone PDSB048 prokMSA_id:027206 AF437552 clone PDSB049 prokMSA_id:037856 AF437555 clone PDSB052 prokMSA_id:036988 AF437556 clone PDSB053 prokMSA_id:031082 AF437558 clone PDSB055 prokMSA_id:038994 AF437559 clone PDSB057 prokMSA_id:039692 AF437562 clone PDSB060 prokMSA_id:024484 AF437564 clone PDSB062 prokMSA_id:020706 AF437565 clone PDSB063 prokMSA_id:024521 AF437566 clone PDSB064 prokMSA_id:038026 AF437585 clone PDSB087 prokMSA_id:044934 AF437586 clone PDSB088 prokMSA_id:049748 AF437592 clone PDSB097 prokMSA_id:019674 AF437593 clone PDSB100 prokMSA_id:045594 AF437594 clone PDSB102 prokMSA_id:049092 AF437612 clone PDSB126 prokMSA_id:040626 AF440442 Bacillus sp. TP3A prokMSA_id:072417 AF440779 Bacillus mojavensis prokMSA_id:051688 AF441316 PAH-contaminated sludge PB-21 prokMSA_id:053114 AF441317 PAH-contaminated sludge PB-22 prokMSA_id:067201 AF497253 Bacillus sp. BacB7 prokMSA_id:055867 AF497256 Bacillus sp. BacB10 prokMSA_id:067200 AF497259 Bacillus sp. BacB13 prokMSA_id:067036 AF499915 Marine SIMO IS-S73-229 prokMSA_id:067035 AF502569 Bacillus sp. SIMO IS-S74-236 prokMSA_id:066143 AF509479 Bacillus sp. MF11 prokMSA_id:062655 AF512383 Bacillus licheniformis prokMSA_id:064681 AF516177 Bacillus licheniformis strain YW1257 prokMSA_id:064517 AF517533 BnMSX15 prokMSA_id:064516 AF517534 BnMSX27 prokMSA_id:070455 AF530291 Bacillus sp. CA-09 prokMSA_id:075496 AF539642 Bacillus sp. Ni1 prokMSA_id:075381 AF539643 Bacillus sp. Ni2 prokMSA_id:075308 AF539645 Bacillus sp. Ni4 prokMSA_id:075240 AF539646 Bacillus sp. Ni5 prokMSA_id:077029 AF539647 Bacillus sp. Ni6 prokMSA_id:075148 AF539648 Bacillus sp. Ni7 prokMSA_id:075984 AF539649 Bacillus sp. Ni8 prokMSA_id:075834 AF539650 Bacillus sp. Ni9 prokMSA_id:077017 AF539651 Bacillus sp. Ni10 prokMSA_id:077089 AF539652 Bacillus sp. Ni11 prokMSA_id:075444 AF539654 Bacillus sp. Ni13 prokMSA_id:075899 AF539655 Bacillus sp. Ni14 prokMSA_id:075189 AF539656 Bacillus sp. Ni15 prokMSA_id:076076 AF539657 Bacillus sp. Ni16 prokMSA_id:075900 AF539658 Bacillus sp. Ni17 prokMSA_id:075402 AF539659 Bacillus sp. Ni18 prokMSA_id:076297 AF539660 Bacillus sp. Ni19 prokMSA_id:076734 AF539661 Bacillus sp. Ni20 prokMSA_id:075779 AF539662 Bacillus sp. Ni21 prokMSA_id:075127 AF539663 Bacillus sp. Ni22 prokMSA_id:076048 AF539664 Bacillus sp. Ni23 prokMSA_id:076645 AF539666 Bacillus sp. Ni25 prokMSA_id:076835 AF539667 Bacillus sp. Ni26 prokMSA_id:075953 AF539668 Bacillus sp. Ni27 prokMSA_id:075642 AF539669 Bacillus sp. Ni28 prokMSA_id:075720 AF539670 Bacillus sp. Ni29 prokMSA_id:076877 AF539672 Bacillus sp. Ni31 prokMSA_id:076314 AF539673 Bacillus sp. Ni32 prokMSA_id:075331 AF539674 Bacillus sp. Ni33 prokMSA_id:076288 AF539676 Bacillus sp. Ni35 prokMSA_id:076176 AF539677 Bacillus sp. Ni36 prokMSA_id:075399 AF539678 Bacillus sp. Ni37 prokMSA_id:076501 AF539681 Bacillus sp. Ni40 prokMSA_id:075433 AF539682 Bacillus sp. Ni41 prokMSA_id:075629 AF539683 Bacillus sp. Ni42 prokMSA_id:075188 AF539684 Bacillus sp. Ni43 prokMSA_id:075486 AF539685 Bacillus sp. Ni45 prokMSA_id:075307 AF539688 Bacillus sp. Ni48 prokMSA_id:075722 AF539689 Bacillus sp. Ni49 prokMSA_id:075374 AF539690 Bacillus sp. Ni50 prokMSA_id:077038 AF539691 Bacillus sp. Ni51 prokMSA_id:075088 AF539692 Bacillus sp. Ni52 prokMSA_id:076101 AF539693 Bacillus sp. Ni53 prokMSA_id:076465 AF539694 Bacillus sp. Ni54 prokMSA_id:076691 AF539695 Bacillus sp. Ni56 prokMSA_id:075472 AF539696 Bacillus sp. Ni57 prokMSA_id:094223 AF545570 Bacillus subtilis prokMSA_id:090112 AH013002 Bacillus subtilis strain HPC248 prokMSA_id:029834 AJ224962 Bacillus amiliensis prokMSA_id:061988 AJ244687 Bacillus sp. V4.BE.27 prokMSA_id:029126 AJ316311 Bacillus sp. LMG 20246 strain LMG 20246 prokMSA_id:035783 AJ344519 Bacillus licheniformis strain OFLB12 prokMSA_id:068833 AJ344521 Bacillus sp. strain MBT1 prokMSA_id:071391 AJ400581 Bacillus sp. LMG-19414 prokMSA_id:071401 AJ438294 Bacillus sp. R-10758 prokMSA_id:070268 AJ438303 Bacillus sp. R-11604 prokMSA_id:055419 AJ489333 Bacillus sp. Lgg5.2 strain Lgg5.2 prokMSA_id:064720 AJ489350 Bacillus sp. Lgg10.11 strain Lgg10.11 prokMSA_id:056452 AJ489351 Bacillus sp. Lgg10.12 strain Lgg10.12 prokMSA_id:064721 AJ489352 Bacillus sp. Lgg10.13 strain Lgg10.13 prokMSA_id:064718 AJ489354 Bacillus sp. Lgg10.15 strain Lgg10.15 prokMSA_id:064719 AJ489356 Bacillus sp. Lgg10.18 strain Lgg10.18 prokMSA_id:064710 AJ489367 Bacillus sp. Lgg15.11 strain Lgg15.11 prokMSA_id:064696 AJ489376 Bacillus sp. Lgg20.5 strain Lgg20.5 prokMSA_id:069168 AJ514243 Bacillus subtilis isolate MBRG 7.0 prokMSA_id:057535 AJ516040 Bacillus sp. L3/39 strain L3/39 prokMSA_id:057527 AJ516056 Bacillus licheniformis strain B/22 prokMSA_id:078983 AJ536425 Bacillus sp. 2 isolate 2 477BP prokMSA_id:078812 AJ536426 Bacillus sp. 2 isolate 2 438BP prokMSA_id:094210 AJ581935 Bacillus subtilis strain 1Pe4-13 prokMSA_id:093811 AJ581944 Bacillus subtilis strain 2P2-17 prokMSA_id:093606 AJ581946 Bacillus subtilis strain 2P3-17 prokMSA_id:093167 AJ581952 Bacillus subtilis strain 2Re1-12 prokMSA_id:093654 AJ581960 Bacillus subtilis strain 2Pe4-1 prokMSA_id:093346 AJ581964 Bacillus subtilis strain 2Re4-20 prokMSA_id:093282 AJ582575 clone M10-10 prokMSA_id:094151 AJ582576 clone M10-02 prokMSA_id:093734 AJ582577 clone M10-04 prokMSA_id:094245 AJ582578 clone M10-05 prokMSA_id:093776 AJ582579 clone M10-06 prokMSA_id:094258 AJ582580 clone M10-07 prokMSA_id:093568 AJ582581 clone M10-08 prokMSA_id:093973 AJ582582 clone M10-09 prokMSA_id:073070 AX537360 3 from Patent EP1241247 prokMSA_id:079275 AX590180 3 from Patent WO02072795 prokMSA_id:032259 AY038902 Marine SE105 prokMSA_id:050343 AY039398 Earthworm burrow B3D2 prokMSA_id:072078 AY048686 Bacillus amyloliquefaciens prokMSA_id:034237 AY055219 Bacillus amyloliquefaciens strain FZB24 prokMSA_id:054628 AY055221 Bacillus amyloliquefaciens strain FZB42 prokMSA_id:047689 AY055222 Bacillus subtilis strain FZB37 prokMSA_id:016642 AY055223 Bacillus amyloliquefaciens strain S23 N prokMSA_id:051067 AY055224 Bacillus amyloliquefaciens strain FZB45 prokMSA_id:040179 AY055225 Bacillus amyloliquefaciens strain DSM7 F prokMSA_id:034230 AY055226 Bacillus amyloliquefaciens strain ATCC 15841 prokMSA_id:071993 AY062009 Bacillus sp. G9a prokMSA_id:069851 AY062010 Bacillus sp. G9a prokMSA_id:020462 AY062011 Bacillus sp. G9c prokMSA_id:086276 AY092295 clone BM160 prokMSA_id:084536 AY092296 clone BM111 prokMSA_id:066720 AY099070 Bacillus subtilis isolate IS13 prokMSA_id:063536 AY117602 Bacillus sp. DV22 prokMSA_id:063535 AY117603 Bacillus sp. DV21 prokMSA_id:063534 AY117604 Bacillus sp. DV37 prokMSA_id:063147 AY121428 Bacillus atrophaeus strain YIM-kkny1 prokMSA_id:063141 AY121433 Bacillus atrophaeus strain YIM-kkny8 prokMSA_id:059866 AY134869 Bacillus sp. A7 prokMSA_id:059859 AY134871 Bacillus sp. A29 prokMSA_id:059858 AY134872 Bacillus sp. A30 prokMSA_id:081392 AY211470 Bacillus subtilis subsp. subtilis strain UCM B-5184 prokMSA_id:081889 AY211471 Bacillus subtilis subsp. subtilis strain UCM B-5137 prokMSA_id:082329 AY211472 Bacillus amyloliquefaciens strain UCM B-5017 prokMSA_id:082410 AY211473 Bacillus amyloliquefaciens strain UCM B-5033 prokMSA_id:081574 AY211474 Bacillus amyloliquefaciens strain UCM B-5009 prokMSA_id:081689 AY211475 Bacillus amyloliquefaciens strain UCM B-5113 prokMSA_id:082088 AY211476 Bacillus amyloliquefaciens strain UCM B-5036 prokMSA_id:081468 AY211477 Bacillus subtilis strain UCM B-5008 prokMSA_id:081588 AY211478 Bacillus mojavensis strain UCM B-5075 prokMSA_id:082210 AY211479 Bacillus subtilis subsp. spizizenii prokMSA_id:081186 AY211480 Bacillus subtilis strain UCM B-5021 prokMSA_id:081541 AY211481 Bacillus mojavensis strain UCM B-5051 prokMSA_id:081885 AY211482 Bacillus amyloliquefaciens strain UCM B-5121 prokMSA_id:081657 AY211483 Bacillus amyloliquefaciens strain At1 prokMSA_id:081480 AY211484 Bacillus subtilis subsp. subtilis strain At2 prokMSA_id:081971 AY211485 Bacillus subtilis strain At3 prokMSA_id:081239 AY211486 Bacillus amyloliquefaciens strain At4 prokMSA_id:081746 AY211487 Bacillus subtilis subsp. subtilis strain At5 prokMSA_id:086583 AY214913 Bacilli clone BAC-P61-4B prokMSA_id:083416 AY242534 Bacillus sp. clone G313116S prokMSA_id:083457 AY242535 Bacillus sp. clone G311116S prokMSA_id:086540 AY242536 Bacillus sp. clone A11216S prokMSA_id:086872 AY279399 Bacillus subtilis prokMSA_id:088100 AY304995 Bacillus subtilis strain HPC248 5' prokMSA_id:088394 AY304996 Bacillus subtilis strain HPC248 3' prokMSA_id:091735 AY336076 Bacillus licheniformis prokMSA_id:092407 AY357897 Bacillus sp. NRL-CB13 prokMSA_id:092802 AY357907 Bacillus sp. NRL-SS14 prokMSA_id:097632 AY378206 Extreme arid zone HX-IIF04 prokMSA_id:097148 AY379767 Bacillus subtilis ATCC 31028 prokMSA_id:097135 AY379768 Bacillus subtilis ATCC 49760 prokMSA_id:096489 AY379769 Bacillus subtilis ATCC 49822 prokMSA_id:098274 AY379770 Bacillus atrophaeus ATCC 6537 prokMSA_id:096170 AY379771 Bacillus atrophaeus ATCC 7972 prokMSA_id:096648 AY379772 Bacillus atrophaeus ATCC 51189 prokMSA_id:072335 BD137581 Symbiotic microorganisms and decomposing means of organic wastes utilizing the symbiotic microorganisms prokMSA_id:071621 BD137582 Symbiotic microorganisms and decomposing means of organic wastes utilizing the symbiotic microorganisms prokMSA_id:014717 NONE Bacillus sp. prokMSA_id:014716 X60605 Bacillus amyloliquefaciens ATCC 23350 . prokMSA_id:014715 X60607 Bacillus atrophaeus NCIMB 12899 . prokMSA_id:014750 X60621 Paenibacillus lautus NCIMB 12780. prokMSA_id:014714 X60622 Paenibacillus lentimorbus ATCC 14707 . prokMSA_id:014711 X60623 Bacillus licheniformis NCDO 1772 . prokMSA_id:014730 X60633 Paenibacillus popilliae ATCC 14706 . prokMSA_id:051405 Y15047 Bacillus licheniformis strain FA6-12 2.30.7.12 STAPHYLOCOCCUS_GROUP 1166 seqs 2.30.7.12.1 STAPHYLOCOCCUS_SUBGROUP 620 seqs 2.30.7.12.1.004 OTU 1 seq prokMSA_id:055737 AF467377 Staphylococcus sp. clone 1572 2.30.7.12.1.005 OTU 2 seqs prokMSA_id:025754 AH010479 Staphylococcus sp. ALE-3 prokMSA_id:023434 AY017054 Staphylococcus sp. ALE-3 5'- 2.30.7.12.1.014 OTU 1 seq prokMSA_id:037919 AJ251530 CCUG 42722T 2.30.7.12.1.015 OTU 1 seq prokMSA_id:055808 AF467338 Staphylococcus sp. clone 1520 2.30.7.12.1.016 OTU 1 seq prokMSA_id:064605 AF467362 Staphylococcus sp. clone 2533 2.30.7.12.1.017 OTU 1 seq prokMSA_id:064606 AF467366 Staphylococcus sp. clone 1573 2.30.7.12.1.018 OTU 1 seq prokMSA_id:064609 AF467361 Staphylococcus sp. clone 1550 2.30.7.12.1.019 OTU 1 seq prokMSA_id:064615 AF467351 Staphylococcus sp. clone 2382 2.30.7.12.1.020 OTU 1 seq prokMSA_id:064625 AF467330 actinomycete clone 1531 2.30.7.12.1.021 OTU 1 seq prokMSA_id:064636 AF467324 Staphylococcus sp. clone 1562 2.30.7.12.1.022 OTU 1 seq prokMSA_id:064643 AF467323 Staphylococcus sp. clone 1567 2.30.7.12.1.023 OTU 1 seq prokMSA_id:064651 AF467308 Staphylococcus sp. clone 1622 2.30.7.12.1.025 OTU 271 seqs prokMSA_id:014784 AB002641 str. HTA563. prokMSA_id:014811 AB004764 unnamed organism. prokMSA_id:014881 AB004765 unnamed organism. prokMSA_id:014828 AB009933 Staphylococcus arlettae str. BP47 ATCC 43957 . prokMSA_id:014830 AB009934 Staphylococcus carnosus subsp. carnosus ATCC 51365 . prokMSA_id:014826 AB009935 Staphylococcus caprae ATCC 35538 . prokMSA_id:014893 AB009936 Staphylococcus cohnii subsp. urealyticum str. CK27 ATCC 49330 . prokMSA_id:014791 AB009937 Staphylococcus capitis subsp. ureolyticus ATCC 49326 . prokMSA_id:014872 AB009938 Staphylococcus delphini str. Heidy ATCC 49171 . prokMSA_id:014786 AB009939 Staphylococcus equorum ATCC 43958 . prokMSA_id:014831 AB009940 Staphylococcus kloosii str. SC210 ATCC 43959 . prokMSA_id:014859 AB009941 Staphylococcus lugdunensis str. N860297 ATCC 43809 . prokMSA_id:014879 AB009942 Staphylococcus pulvereri ATCC 51698 . prokMSA_id:014779 AB009943 Staphylococcus piscifermentans ATCC 51136 . prokMSA_id:014765 AB009944 Staphylococcus pasteuri ATCC 51129 . prokMSA_id:014806 AB009945 Staphylococcus schleiferi subsp. coagulans str. GA211 ATCC 49545 prokMSA_id:014844 AB009946 Staphylococcus vitulinus str. DD 756 ATCC 51145 . prokMSA_id:033507 AB074729 Low G+C Gram-positive S-N1-3 prokMSA_id:081313 AB081287 Staphylococcus sciuri strain:eq282 prokMSA_id:091092 AB116135 Staphylococcus sciuri strain:T131 prokMSA_id:077317 AE016749 Staphylococcus epidermidis ATCC 12228 section 6 of 9 of the complete genome prokMSA_id:077574 AE016750 Staphylococcus epidermidis ATCC 12228 section 7 of 9 of the complete genome prokMSA_id:077410 AE016751 Staphylococcus epidermidis ATCC 12228 section 8 of 9 of the complete genome prokMSA_id:014809 AF004219 Staphylococcus succinus str. AMG-D2. prokMSA_id:014808 AF004220 Staphylococcus succinus str. AMG-D1 ATCC 700337 . prokMSA_id:014788 AF015929 Staphylococcus aureus ATCC 29740. prokMSA_id:044668 AF041356 Staphylococcus carnosus prokMSA_id:014812 AF041357 Staphylococcus xylosus DSM 20266. prokMSA_id:014882 AF041358 Staphylococcus sciuri DSM 20345. prokMSA_id:014895 AF041359 Staphylococcus piscifermentans NRIC 1818. prokMSA_id:014832 AF041360 Staphylococcus kloosii str. SC210 DSM 20676. prokMSA_id:014878 AF041361 Staphylococcus pasteuri ATCC 51129 . prokMSA_id:014863 AF041362 Staphylococcus caprae DSM 20608 . prokMSA_id:014890 AF041363 Staphylococcus equorum ATCC 43958 . prokMSA_id:014840 AF076030 Staphylococcus aureus. prokMSA_id:014847 AF107307 Staphylococcus aureus subsp. anaerobius str. 4. prokMSA_id:014790 AF124039 Staphylococcus #2 from Psoroptes ovis. prokMSA_id:014885 AF146368 Staphylococcus aureus str. 71382. prokMSA_id:072269 AF150705 Elbe River snow isolate Iso3 prokMSA_id:035229 AF193881 Staphylococcus intermedius clone CE3 prokMSA_id:038878 AF193882 Staphylococcus intermedius clone CE5 prokMSA_id:025655 AF193885 Staphylococcus capitis prokMSA_id:040009 AF200217 Psychrophilic marine PS35 complete prokMSA_id:024228 AF202010 Human oral C19 prokMSA_id:074413 AF202011 Human oral C20 prokMSA_id:023774 AF234853 Staphylococcus capitis prokMSA_id:026685 AF322002 Staphylococcus sp. B3117 prokMSA_id:039883 AF343958 Staphylococcus sp. NBF37 prokMSA_id:021287 AF371538 clone p-888-a5 prokMSA_id:070096 AF397060 Staphylococcus epidermidis AB111112 prokMSA_id:070830 AF423242 soil clone 240-1 prokMSA_id:064642 AF467320 Staphylococcus sp. clone 1586 prokMSA_id:064633 AF467328 Staphylococcus sp. clone 1615 prokMSA_id:064631 AF467329 Staphylococcus sp. clone 1566 prokMSA_id:064632 AF467333 Staphylococcus sp. clone 1574 prokMSA_id:064629 AF467336 Staphylococcus sp. clone 1569 prokMSA_id:064595 AF467381 Staphylococcus sp. clone 1614 prokMSA_id:064581 AF467402 Staphylococcus sp. clone Tminor24 prokMSA_id:064580 AF467403 Staphylococcus sp. clone Tminor19 prokMSA_id:064579 AF467404 Staphylococcus sp. clone Tminor27 prokMSA_id:064578 AF467405 Staphylococcus sp. clone Tminor25 prokMSA_id:064577 AF467406 Staphylococcus sp. clone Tminor17 prokMSA_id:064575 AF467407 Staphylococcus sp. clone Tminor30 prokMSA_id:064576 AF467408 Staphylococcus sp. clone Gsetzer7 prokMSA_id:064574 AF467409 Staphylococcus sp. clone Ggeomydis6 prokMSA_id:064573 AF467410 Staphylococcus sp. clone Tminor20 prokMSA_id:064572 AF467411 Staphylococcus sp. clone Gcentralis14 prokMSA_id:064570 AF467412 Staphylococcus sp. clone Tminor8 prokMSA_id:064571 AF467413 Staphylococcus sp. clone Gexpansis21 prokMSA_id:064568 AF467414 Staphylococcus sp. clone Ggeomydis17 prokMSA_id:071236 AF467415 Staphylococcus sp. clone Gcentralis1 prokMSA_id:064567 AF467416 Staphylococcus sp. clone Gexpansis24 prokMSA_id:064565 AF467417 Staphylococcus sp. clone 87-10 prokMSA_id:064566 AF467418 Staphylococcus sp. clone Gsetzeri3 prokMSA_id:064563 AF467419 Staphylococcus sp. clone Gpanamen9 prokMSA_id:064564 AF467420 Staphylococcus sp. clone 87-5 prokMSA_id:064562 AF467421 Staphylococcus sp. clone Gexpansis9 prokMSA_id:064560 AF467422 Staphylococcus sp. clone bottae5 prokMSA_id:064561 AF467423 Staphylococcus sp. clone bottae2 prokMSA_id:064559 AF467424 Staphylococcus sp. clone bottae7 prokMSA_id:064558 AF467425 Staphylococcus sp. clone bottae4 prokMSA_id:064557 AF467426 Staphylococcus sp. clone 87-8 prokMSA_id:064556 AF467427 Staphylococcus sp. clone Gexpansis4 prokMSA_id:064555 AF467428 Staphylococcus sp. clone 87-7 prokMSA_id:064553 AF467429 Staphylococcus sp. clone bottae10 prokMSA_id:064554 AF467430 Staphylococcus sp. clone Gexpansis25 prokMSA_id:080662 AF468443 Arctic sea ice bacterum ARK9973 prokMSA_id:066238 AF508104 Staphylococcus sciuri isolate S7 prokMSA_id:064738 AF515587 Staphylococcus xylosus prokMSA_id:056287 AF526901 Staphylococcus warneri strain 82-4c rrn prokMSA_id:062644 AF527483 Staphylococcus linens prokMSA_id:055657 AF532915 Staphylococcus pasteuri strain ZA-b1 prokMSA_id:055429 AF532916 Staphylococcus pasteuri strain ZA-b2 prokMSA_id:060719 AF532917 Staphylococcus pasteuri strain ZA-b3 prokMSA_id:059266 AF540985 Staphylococcus epidermidis prokMSA_id:014816 AJ223451 str. 2e. prokMSA_id:014874 AJ224939 Staphylococcus sp. str. Koll-2. prokMSA_id:061946 AJ244682 Staphylococcus sp. V4.BO.08 prokMSA_id:061948 AJ244683 Staphylococcus sp. V4.BP.06 prokMSA_id:052769 AJ276810 Staphylococcus sp. strain LMG-19417 prokMSA_id:029754 AJ316320 Staphylococcus sp. LMG 21006 strain LMG 21006 prokMSA_id:021472 AJ320272 Staphylococcus succinus strain SB72 prokMSA_id:027755 AJ344227 Staphylococcus epidermidis strain RAR1 prokMSA_id:034155 AJ421446 Staphylococcus sciuri subsp. sciuri strain DSM 20345T prokMSA_id:064277 AJ491709 Staphylococcus epidermidis strain P5 prokMSA_id:059487 AJ508368 Staphylococcus epidermidis . isolate MBRG 2.5 prokMSA_id:073066 AJ514249 Staphylococcus hominis isolate MBRG 6.6 prokMSA_id:055633 AJ514253 Staphylococcus epidermidis isolate MBRG 6.8 prokMSA_id:078094 AJ517414 Staphylococcus nepalensis strain CW1T prokMSA_id:078699 AJ536416 Staphylococcus succinus isolate 8:2 620BP prokMSA_id:078674 AJ536435 Staphylococcus sp. 9:4 isolate 9:4 1538BP prokMSA_id:093337 AJ551159 Staphylococcus sp. An21 isolate An21 prokMSA_id:093523 AJ551169 Staphylococcus sp. An31 isolate An31 prokMSA_id:093348 AJ551171 Staphylococcus sp. An33 isolate An33 prokMSA_id:093779 AJ551173 Staphylococcus sp. An35 isolate An35 prokMSA_id:093049 AJ580648 clone NN325-58 prokMSA_id:094488 AJ583199 Firmicute clone S15B-MN18 prokMSA_id:095025 AJ583200 Firmicute clone S15B-MN96 prokMSA_id:060318 AP003130 Staphylococcus aureus subsp. aureus N315 genomic complete genome section 2/10 prokMSA_id:060309 AP003135 Staphylococcus aureus subsp. aureus N315 genomic complete genome section 7/10 prokMSA_id:060313 AP003136 Staphylococcus aureus subsp. aureus N315 genomic complete genome section 8/10 prokMSA_id:068849 AP003363 Staphylococcus aureus subsp. aureus Mu50 genomic complete section 6/9 prokMSA_id:060319 AP004823 Staphylococcus aureus subsp. aureus MW2 complete genome strain:MW2 section 2/10 prokMSA_id:060308 AP004828 Staphylococcus aureus subsp. aureus MW2 complete genome strain:MW2 section 7/10 prokMSA_id:060312 AP004829 Staphylococcus aureus subsp. aureus MW2 complete genome strain:MW2 section 8/10 prokMSA_id:048424 AY030317 Staphylococcus epidermidis strain JPL-7 prokMSA_id:041763 AY030318 Staphylococcus hominis strain JPL-5 prokMSA_id:046870 AY030321 Staphylococcus capitis strain JPL-2 prokMSA_id:042583 AY030340 Staphylococcus epidermidis strain KL-004 prokMSA_id:045990 AY030342 Staphylococcus epidermidis strain KL-096 prokMSA_id:029030 AY053476 AT425_Eub41 prokMSA_id:029343 AY057450 Staphylococcus sp. YSS/2001-5 complete prokMSA_id:081776 AY080970 Bacillus sp. clone ckl8 prokMSA_id:081745 AY080971 Staphylococcus sp. clone ckl9 prokMSA_id:081839 AY080976 Staphylococcus sp. clone ckl14 prokMSA_id:063475 AY121979 Staphylococcus sp. RA90 prokMSA_id:069362 AY144443 Staphylococcus schleiferi prokMSA_id:069741 AY144444 Staphylococcus hominis prokMSA_id:074094 AY144447 Staphylococcus aureus prokMSA_id:077637 AY159883 Staphylococcus sp. 98TH11317 prokMSA_id:078763 AY161046 Staphylococcus cohnii strain PLC-9 prokMSA_id:077465 AY167804 Staphylococcus epidermidis strain SAFN-039 prokMSA_id:077345 AY167805 Staphylococcus hominis strain SAFN-038 prokMSA_id:077340 AY167864 Staphylococcus epidermidis strain SAFR-016 prokMSA_id:077128 AY167961 Swine manure RT-22 prokMSA_id:078872 AY189582 Staphylococcus sp. clone EarCan055 prokMSA_id:078596 AY189583 Staphylococcus sp. clone EarCan056 prokMSA_id:079031 AY189584 Staphylococcus sp. clone EarCan057 prokMSA_id:078690 AY189585 Staphylococcus sp. clone EarCan058 prokMSA_id:078924 AY189586 Staphylococcus sp. clone EarCan059 prokMSA_id:078945 AY189587 Staphylococcus sp. clone EarCan060 prokMSA_id:078987 AY189588 Staphylococcus sp. clone EarCan061 prokMSA_id:078810 AY189589 Staphylococcus sp. clone EarCan062 prokMSA_id:078692 AY189590 Staphylococcus sp. clone EarCan063 prokMSA_id:079017 AY189591 Staphylococcus sp. clone EarCan064 prokMSA_id:078550 AY189592 Staphylococcus sp. clone EarCan065 prokMSA_id:079005 AY189593 Staphylococcus sp. clone EarCan066 prokMSA_id:078955 AY189594 Staphylococcus sp. clone EarCan067 prokMSA_id:078815 AY189595 Staphylococcus sp. clone EarCan068 prokMSA_id:078956 AY189597 Staphylococcus sp. clone EarCan070 prokMSA_id:078568 AY189598 Staphylococcus sp. clone EarCan071 prokMSA_id:078775 AY189599 Staphylococcus sp. clone EarCan072 prokMSA_id:078729 AY189600 Staphylococcus sp. clone EarCan073 prokMSA_id:079034 AY189601 Staphylococcus sp. clone EarCan074 prokMSA_id:078538 AY189602 Staphylococcus sp. clone EarCan075 prokMSA_id:078902 AY189603 Staphylococcus sp. clone EarCan076 prokMSA_id:078918 AY189604 Staphylococcus sp. clone EarCan077 prokMSA_id:078635 AY189605 Staphylococcus sp. clone EarCan078 prokMSA_id:078992 AY189606 Staphylococcus sp. clone EarCan079 prokMSA_id:078575 AY189607 Staphylococcus sp. clone EarCan080 prokMSA_id:078948 AY189608 Staphylococcus sp. clone EarCan081 prokMSA_id:078636 AY189609 Staphylococcus sp. clone EarCan082 prokMSA_id:078946 AY189610 Staphylococcus sp. clone EarCan083 prokMSA_id:078668 AY189611 Staphylococcus sp. clone EarCan084 prokMSA_id:078981 AY189613 Staphylococcus sp. clone EarCan086 prokMSA_id:079759 AY189747 Staphylococcus sp. B-3 prokMSA_id:089118 AY308046 Staphylococcus epidermidis prokMSA_id:088484 AY321382 clone H50 prokMSA_id:091634 AY336552 Staphylococcus sp. pfB23 prokMSA_id:091071 AY345395 G24 prokMSA_id:092651 AY346310 Staphylococcus caprae HCP4 prokMSA_id:094453 AY375294 Staphylococcus saprophyticus strain MS510 prokMSA_id:095013 AY375297 Staphylococcus equorum strain MS02 prokMSA_id:097108 AY395014 Staphylococcus lentus prokMSA_id:097812 AY395015 Staphylococcus cohnii prokMSA_id:095674 AY395016 Staphylococcus xylosus prokMSA_id:014886 D83353 Staphylococcus aureus str. FU16A2. prokMSA_id:014887 D83354 Staphylococcus aureus str. Kitami. prokMSA_id:014846 D83355 Staphylococcus aureus subsp. anaerobius str. MVF-7 ATCC 35844 . prokMSA_id:014888 D83356 Staphylococcus aureus str. OA1. prokMSA_id:014884 D83357 Staphylococcus aureus subsp. aureus ATCC 12600 . prokMSA_id:014785 D83358 Staphylococcus auricularis str. WK811M MAFF 911484. prokMSA_id:014764 D83360 Staphylococcus chromogenes str. 1462 MAFF 911474. prokMSA_id:014904 D83361 Staphylococcus cohnii subsp. cohnii MAFF 911487. prokMSA_id:014827 D83362 Staphylococcus epidermidis str. MAFF 911486. prokMSA_id:014795 D83363 Staphylococcus epidermidis ATCC 14990 . prokMSA_id:014898 D83364 Staphylococcus felis str. GD521 ATCC 49168 . prokMSA_id:014899 D83365 Staphylococcus felis str. FD21-2. prokMSA_id:014901 D83366 Staphylococcus gallinarum str. VIII1 ATCC 35539 . prokMSA_id:014864 D83367 Staphylococcus haemolyticus MAFF 911476. prokMSA_id:014789 D83368 Staphylococcus hyicus str. 1 ATCC 11249 . prokMSA_id:014892 D83369 Staphylococcus intermedius str. H11 MAFF 911388. prokMSA_id:014767 D83370 Staphylococcus lentus str. K21 MAFF 911385. prokMSA_id:014868 D83371 Staphylococcus saprophyticus subsp. saprophyticus MAFF 911473 . prokMSA_id:014807 D83372 Staphylococcus schleiferi str. CD22-1. prokMSA_id:014768 D83373 Staphylococcus simulans str. MK 148 MAFF 910161. prokMSA_id:014823 D83374 Staphylococcus xylosus MAFF 911482. prokMSA_id:014877 L20250 Staphylococcus saprophyticus subsp. saprophyticus str. NT75 DSM prokMSA_id:014839 L36472 Staphylococcus aureus subsp. aureus ATCC 12600 . prokMSA_id:014762 L37596 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 . prokMSA_id:014787 L37597 Staphylococcus aureus subsp. aureus ATCC 12600 . prokMSA_id:014763 L37598 Staphylococcus auricularis str. WK811M ATCC 33753 . prokMSA_id:014873 L37599 Staphylococcus capitis subsp. capitis ATCC 27840 . prokMSA_id:014857 L37600 Staphylococcus haemolyticus ATCC 29970 . prokMSA_id:014818 L37601 Staphylococcus hominis subsp. hominis ATCC 27844 . prokMSA_id:014792 L37602 Staphylococcus saccharolyticus ATCC 14953 . prokMSA_id:014814 L37603 Staphylococcus warneri ATCC 27836 . prokMSA_id:014783 L37605 Staphylococcus epidermidis ATCC 14990 . prokMSA_id:044696 NC_002745 Staphylococcus aureus subsp. aureus N315 complete genome prokMSA_id:044631 NC_002758 Staphylococcus aureus strain Mu50 complete genome prokMSA_id:060766 NC_003923 Staphylococcus aureus subsp. aureus MW2 complete genome prokMSA_id:077455 NC_004461 Staphylococcus epidermidis ATCC 12228 complete genome prokMSA_id:014900 NONE Staphylococcus schleiferi subsp. schleiferi DSM 4807 . prokMSA_id:014843 NONE Staphylococcus schleiferi subsp. schleiferi DSM 4807 . prokMSA_id:014834 S83566 Staphylococcus muscae str. MB4 CCM 4175 . prokMSA_id:030519 S83568 Staphylococcus schleiferi Genomic 1554 nt prokMSA_id:014880 S83569 Staphylococcus sciuri ATCC 20345 . prokMSA_id:014766 U12764 Staphylococcus pulvereri str. NT 215 PCM 2443 . prokMSA_id:014771 X66100 Staphylococcus haemolyticus ATCC 29970 . prokMSA_id:014836 X66101 Staphylococcus hominis subsp. hominis ATCC 27844 . prokMSA_id:014794 X68417 Staphylococcus aureus subsp. aureus ATCC 12600 . prokMSA_id:014825 X70648 Staphylococcus aureus subsp. aureus NCDO 949 . prokMSA_id:014891 X75943 Staphylococcus epidermidis. prokMSA_id:014817 X75944 Staphylococcus epidermidis. prokMSA_id:014897 X84731 Staphylococcus lutrae. prokMSA_id:074274 X84731 Staphylococcus sp. prokMSA_id:014869 X86633 Staphylococcus sp. str. 05-41. prokMSA_id:014870 X86634 Staphylococcus sp. str. 1F-01. prokMSA_id:014837 X86636 Staphylococcus sp. str. 1F-09. prokMSA_id:014866 X86639 Staphylococcus sp. str. 1F-22. prokMSA_id:014867 X86640 Staphylococcus sp. str. 1F-23. prokMSA_id:014824 X86641 Staphylococcus sp. str. AG-30. prokMSA_id:014871 X86642 Staphylococcus sp. str. AG-37. prokMSA_id:014803 X86648 Staphylococcus sp. str. S5-94. prokMSA_id:014838 X86650 Staphylococcus sp. str. S5-96. prokMSA_id:014862 Y12593 Staphylococcus caprae DSM 20608 . prokMSA_id:014894 Y15750 Staphylococcus condimenti str. F-2 DSM 11674 . prokMSA_id:014782 Y15753 Staphylococcus piscifermentans str. PU-87. prokMSA_id:014781 Y15754 Staphylococcus piscifermentans str. SK 03. prokMSA_id:014889 Y15856 Staphylococcus aureus str. M2. prokMSA_id:014849 Z22809 Staphylococcus epidermidis. prokMSA_id:014856 Z26888 Staphylococcus arlettae. prokMSA_id:014829 Z26889 Staphylococcus auricularis. prokMSA_id:014876 Z26890 Staphylococcus caprae. prokMSA_id:014848 Z26891 Staphylococcus carnosus. prokMSA_id:014883 Z26893 Staphylococcus cohnii. prokMSA_id:014780 Z26894 Staphylococcus epidermidis ATCC 14990 . prokMSA_id:014842 Z26895 Staphylococcus equorum. prokMSA_id:014835 Z26896 Staphylococcus haemolyticus. prokMSA_id:014853 Z26897 Staphylococcus intermedius. prokMSA_id:014850 Z26898 Staphylococcus kloosii. prokMSA_id:014841 Z26899 Staphylococcus lugdunensis. prokMSA_id:014793 Z26900 Staphylococcus xylosus. prokMSA_id:014875 Z26901 Staphylococcus sciuri. prokMSA_id:014770 Z26902 Staphylococcus saprophyticus. prokMSA_id:014805 Z26903 Staphylococcus warneri. prokMSA_id:014851 Z26904 Staphylococcus schleiferi subsp. schleiferi ATCC 43808 . prokMSA_id:014804 Z26905 Staphylococcus hominis. prokMSA_id:014854 Z26940 Staphylococcus capitis subsp. capitis ATCC 27840 . prokMSA_id:014855 Z26941 Staphylococcus capitis. prokMSA_id:037172 Z73432 species isolate Boom-7m-07 2.30.7.12.1.026 OTU 1 seq prokMSA_id:014903 Z22778 Spirochaeta sp. str. HIS Oman N26. 2.30.7.12.1.027 OTU 1 seq prokMSA_id:074569 AJ514245 Staphylococcus epidermidis isolate MBRG 6.5 2.30.7.12.1.028 OTU 1 seq prokMSA_id:078905 AY189637 clone EarCan110 2.30.7.12.1.029 OTU 1 seq prokMSA_id:079069 AY189638 clone EarCan111 2.30.7.12.1.030 OTU 1 seq prokMSA_id:081493 AB081288 Staphylococcus sciuri strain:eq320 2.30.7.12.1.031 OTU 1 seq prokMSA_id:086207 AY241414 Staphylococcus sp. UST010620-004 2.30.7.12.1.032 OTU 1 seq prokMSA_id:097867 AY395031 low G+C Gram-positive clone NAB27 2.30.7.12.1.999 poor quality 329 seqs prokMSA_id:051793 AB029408 4-4:2 prokMSA_id:084559 AB092801 Staphylococcus gallinarum strain:AMM101 prokMSA_id:082508 AB092802 Staphylococcus kloosii strain:AMM004 prokMSA_id:014810 AF078296 unnamed organism. prokMSA_id:045204 AF102128 5744rev prokMSA_id:014799 AF128276 Staphylococcus epidermidis str. cn7. prokMSA_id:014798 AF128277 Staphylococcus epidermidis str. cn9. prokMSA_id:014797 AF128278 Staphylococcus epidermidis str. cn95. prokMSA_id:014796 AF128279 Staphylococcus epidermidis str. cn96. prokMSA_id:040369 AF128280 Staphylococcus hominis strain cn128 prokMSA_id:032856 AF128281 Staphylococcus hominis strain cn164 prokMSA_id:039957 AF128282 Staphylococcus hominis strain cn182 prokMSA_id:014778 AF128283 Staphylococcus haemolyticus str. cn134. prokMSA_id:014777 AF128284 Staphylococcus haemolyticus str. cn138. prokMSA_id:014776 AF128285 Staphylococcus haemolyticus str. cn143. prokMSA_id:014775 AF128286 Staphylococcus haemolyticus str. cn168. prokMSA_id:014774 AF128287 Staphylococcus haemolyticus str. cn78. prokMSA_id:014773 AF128288 Staphylococcus haemolyticus str. cn81. prokMSA_id:014772 AF128289 Staphylococcus haemolyticus str. cn90. prokMSA_id:014860 AF128290 Staphylococcus lugdunensis str. cn85. prokMSA_id:014769 AF128291 Staphylococcus simulans str. cn17. prokMSA_id:020109 AF148969 Aquatic STS_R2A_13 prokMSA_id:052701 AF175614 WJGRT-71 prokMSA_id:074590 AF175627 WJGRT-92 prokMSA_id:039937 AF193883 Staphylococcus intermedius clone CE79 prokMSA_id:035904 AF193884 Staphylococcus intermedius clone CE80 prokMSA_id:042497 AF240129 Grassland soil TSA-1 prokMSA_id:071388 AF240140 Grassland soil TSA-15 prokMSA_id:072803 AF253354 human infant N3C prokMSA_id:073981 AF253384 human infant L17J prokMSA_id:016357 AF333342 Staphylococcus sp. B60 prokMSA_id:069035 AF335920 Staphylococcus sp. N23 prokMSA_id:031061 AF343957 Staphylococcus sp. NBF36 prokMSA_id:068122 AF365614 clone BT60MF7BE10 prokMSA_id:068087 AF365655 clone BM89DS6BbA7 prokMSA_id:068064 AF365684 clone BT60DS1BA8 prokMSA_id:068044 AF365710 clone BT60DS1BF2 prokMSA_id:026503 AF372580 Staphylococcus xylosus prokMSA_id:019890 AF384199 Staphylococcus sp. S7 prokMSA_id:016634 AF384200 Staphylococcus sp. TG25 prokMSA_id:017247 AF406676 Staphylococcus sp. B6 strain B6 prokMSA_id:021731 AF406678 Staphylococcus xylosus strain B8 prokMSA_id:066647 AF432251 Bacillus sp. Ellin427 prokMSA_id:018086 AF445232 Swine fecal FPC66 prokMSA_id:046561 AF445233 Swine fecal FPC52 prokMSA_id:022746 AF445276 Swine manure pit PPC101 prokMSA_id:018444 AF445277 Swine manure pit PPC81 prokMSA_id:049828 AF448262 clone DJAT-1 prokMSA_id:027577 AF456348 Staphylococcus xylosus S12 prokMSA_id:042586 AF456349 Staphylococcus xylosus S12 prokMSA_id:073742 AF456350 Staphylococcus carnosus S8 prokMSA_id:072483 AF456351 Staphylococcus equorum S18 prokMSA_id:019983 AF456352 Staphylococcus xylosus S20 prokMSA_id:072276 AF456353 Staphylococcus carnosus S14 prokMSA_id:040192 AF456354 Staphylococcus xylosus S13 prokMSA_id:064650 AF467307 Staphylococcus sp. clone 2447 prokMSA_id:064648 AF467309 Staphylococcus sp. clone 2370 prokMSA_id:064645 AF467310 Staphylococcus sp. clone 2448 prokMSA_id:064647 AF467311 Staphylococcus sp. clone 2379 prokMSA_id:056263 AF467312 Staphylococcus sp. clone 2378 prokMSA_id:064649 AF467313 Staphylococcus sp. clone 2376 prokMSA_id:064646 AF467314 Staphylococcus sp. clone 2377 prokMSA_id:064644 AF467315 Staphylococcus sp. clone 2374 prokMSA_id:064641 AF467317 Staphylococcus sp. clone 2455 prokMSA_id:064639 AF467318 Staphylococcus sp. clone 2452 prokMSA_id:064640 AF467319 Staphylococcus sp. clone 2368 prokMSA_id:064637 AF467321 Staphylococcus sp. clone 2369 prokMSA_id:064638 AF467322 Staphylococcus sp. clone 2380 prokMSA_id:064635 AF467325 Staphylococcus sp. clone 2358 prokMSA_id:064634 AF467326 Staphylococcus sp. clone 2365 prokMSA_id:064630 AF467327 Staphylococcus sp. clone 2366 prokMSA_id:064628 AF467331 Staphylococcus sp. clone 2371 prokMSA_id:064626 AF467334 Staphylococcus sp. clone 2367 prokMSA_id:064627 AF467335 Staphylococcus sp. clone 2375 prokMSA_id:064624 AF467337 Staphylococcus sp. clone 2372 prokMSA_id:064619 AF467339 Staphylococcus sp. clone 2364 prokMSA_id:056286 AF467346 Staphylococcus sp. clone 2391 prokMSA_id:064618 AF467347 Staphylococcus sp. clone 2381 prokMSA_id:064613 AF467348 actinomycete clone 2390 prokMSA_id:055720 AF467349 Staphylococcus sp. clone 2363 prokMSA_id:056238 AF467365 Staphylococcus sp. clone 2373 prokMSA_id:064602 AF467368 Staphylococcus sp. clone 2362 prokMSA_id:071063 AF488783 Marine firmicute S-10 prokMSA_id:067182 AF498066 Staphylococcus sp. isolate DGGE gel band V4-5 prokMSA_id:067184 AF498067 Staphylococcus sp. isolate DGGE gel band M4 prokMSA_id:067183 AF498068 Staphylococcus sp. isolate DGGE gel band MR4 prokMSA_id:067180 AF498069 Staphylococcus equorum isolate DGGE gel band V4-5 prokMSA_id:067181 AF498070 Staphylococcus equorum isolate DGGE gel band MS4 prokMSA_id:067178 AF498071 Staphylococcus equorum isolate DGGE gel band MN4 prokMSA_id:067179 AF498072 Staphylococcus equorum isolate DGGE gel band MR4 prokMSA_id:067173 AF498073 Staphylococcus equorum isolate DGGE gel band M4 prokMSA_id:064374 AF516516 Staphylococcus sciuri prokMSA_id:072757 AF530286 Staphylococcus sp. S5-34 prokMSA_id:090297 AH013003 Staphylococcus aureus strain HPC250 prokMSA_id:014800 AJ247265 Psychrobacter urativorans str. B-57 DSM 20429. prokMSA_id:072351 AJ251723 Bacillus sp. OS192 prokMSA_id:027060 AJ288298 Staphylococcus pasteuri isolate UK5 prokMSA_id:022194 AJ288303 Staphylococcus pasteuri isolate UK10 prokMSA_id:071247 AJ289185 E2-K2 prokMSA_id:017364 AJ292458 ZI-2 clone ZI-2 prokMSA_id:032197 AJ295367 Rape rhizosphere cse051 prokMSA_id:033611 AJ295368 Rape rhizosphere cse053 prokMSA_id:053809 AJ295418 Rape rhizosphere tsb004 prokMSA_id:019993 AJ309920 Staphylococcus haemolyticus strain dtb41 prokMSA_id:022358 AJ344520 Staphylococcus hominis strain OFLB10 prokMSA_id:023977 AJ391185 Staphylococcus sp. AS-24 prokMSA_id:072184 AJ404516 Staphylococcus SE1 prokMSA_id:037170 AJ404517 Staphylococcus SE2 prokMSA_id:059218 AJ458194 Staphylococcus sp. 2Asq67 prokMSA_id:064690 AJ489358 Staphylococcus sp. Lgg15.2 strain Lgg15.2 prokMSA_id:064687 AJ489363 Staphylococcus sp. Lgg15.7 strain Lgg15.7 prokMSA_id:058567 AJ508354 Staphylococcus lugdunensis prokMSA_id:078813 AJ536415 Staphylococcus succinus isolate 8:2 563BP prokMSA_id:078785 AJ536429 Staphylococcus sp. 5:7 isolate 5:7 590BP prokMSA_id:078977 AJ536430 Staphylococcus sp. 5:7 isolate 5:7 538BP prokMSA_id:078760 AJ536433 Staphylococcus aureus isolate 11:5 575BP prokMSA_id:078771 AJ536434 Staphylococcus aureus isolate 11:5 608BP prokMSA_id:078928 AJ536446 Staphylococcus sp. isolate 5:4 594BP prokMSA_id:078759 AJ536447 Staphylococcus sp. isolate 5:4 589BP prokMSA_id:095455 AJ555141 Staphylococcus hominis prokMSA_id:093055 AJ580646 clone NN325-42 prokMSA_id:092564 AJ580649 clone NN325-16 prokMSA_id:092402 AJ580662 clone NN325-1 prokMSA_id:092266 AJ580667 clone NN325-25 prokMSA_id:092660 AJ580670 clone NN325-77 prokMSA_id:092335 AJ580671 clone NN325-35 prokMSA_id:093143 AJ581119 Staphylococcus epidermidis strain 1R1-18 prokMSA_id:093712 AJ581930 Staphylococcus pasteuri strain 1P1-28 prokMSA_id:093311 AJ581941 Staphylococcus pasteuri strain 2R3-18 prokMSA_id:093899 AJ581947 Staphylococcus epidermidis strain 2P3-18 prokMSA_id:031923 AY017055 Staphylococcus sp. ALE-3 3'- prokMSA_id:038962 AY026056 Staphylococcus simulans prokMSA_id:052541 AY039413 Soil S55M1 prokMSA_id:040000 AY039818 Staphylococcus cohnii strain jshs41 prokMSA_id:082351 AY080972 Staphylococcus sp. clone ckl10 prokMSA_id:081932 AY080973 Staphylococcus sp. clone ckl11 prokMSA_id:082004 AY080975 Staphylococcus sp. clone ckl13 prokMSA_id:066087 AY099228 clone MTU-3 prokMSA_id:063448 AY126144 Staphylococcus aureus strain AS27 prokMSA_id:063447 AY126145 Staphylococcus aureus strain LA14 prokMSA_id:063445 AY126146 Staphylococcus aureus strain R1 prokMSA_id:055440 AY126147 Staphylococcus aureus strain SI1 prokMSA_id:063446 AY126148 Staphylococcus aureus strain SI9 prokMSA_id:063444 AY126149 Staphylococcus carnosus strain MZ10 prokMSA_id:063443 AY126150 Staphylococcus carnosus strain MZ4 prokMSA_id:063442 AY126151 Staphylococcus carnosus strain MZ6 prokMSA_id:063440 AY126152 Staphylococcus carnosus strain SI2 prokMSA_id:063436 AY126158 Staphylococcus chromogenes strain A10 prokMSA_id:063435 AY126159 Staphylococcus chromogenes strain A12 prokMSA_id:063434 AY126161 Staphylococcus chromogenes strain AM9 prokMSA_id:063433 AY126162 Staphylococcus chromogenes strain B11 prokMSA_id:063430 AY126163 Staphylococcus chromogenes strain C13 prokMSA_id:063427 AY126164 Staphylococcus chromogenes strain CF2 prokMSA_id:063428 AY126165 Staphylococcus chromogenes strain Co1 prokMSA_id:063426 AY126166 Staphylococcus chromogenes strain E2 prokMSA_id:063425 AY126167 Staphylococcus chromogenes strain H4 prokMSA_id:063432 AY126168 Staphylococcus chromogenes strain K2 prokMSA_id:063431 AY126169 Staphylococcus chromogenes strain K7 prokMSA_id:063429 AY126170 Staphylococcus chromogenes strain LA7 prokMSA_id:063424 AY126171 Staphylococcus chromogenes strain R11 prokMSA_id:063423 AY126172 Staphylococcus chromogenes strain R2 prokMSA_id:063420 AY126173 Staphylococcus epidermidis strain CF4 prokMSA_id:063419 AY126174 Staphylococcus epidermidis strain MZ3 prokMSA_id:056068 AY126175 Staphylococcus epidermidis strain N2 prokMSA_id:055914 AY126176 Staphylococcus equorum strain 11K14 prokMSA_id:063421 AY126177 Staphylococcus equorum strain 12K14 prokMSA_id:063422 AY126178 Staphylococcus equorum strain 14K14 prokMSA_id:063418 AY126179 Staphylococcus equorum strain 17K14 prokMSA_id:063417 AY126180 Staphylococcus equorum strain 62M26 prokMSA_id:063416 AY126181 Staphylococcus equorum strain B1b prokMSA_id:056413 AY126183 Staphylococcus equorum strain M095 prokMSA_id:063415 AY126184 Staphylococcus equorum strain S1268 prokMSA_id:063414 AY126185 Staphylococcus equorum strain SE2 prokMSA_id:063413 AY126186 Staphylococcus equorum strain SE4 prokMSA_id:063412 AY126187 Staphylococcus equorum strain SE5 prokMSA_id:063411 AY126188 Staphylococcus equorum strain SE6 prokMSA_id:063410 AY126190 Staphylococcus equorum strain SE8 prokMSA_id:063409 AY126191 Staphylococcus equorum strain SI3 prokMSA_id:063408 AY126192 Staphylococcus equorum strain SI4 prokMSA_id:063406 AY126193 Staphylococcus equorum strain SI8 prokMSA_id:056276 AY126194 Staphylococcus equorum strain SS1 prokMSA_id:063407 AY126195 Staphylococcus equorum strain SS13 prokMSA_id:063405 AY126196 Staphylococcus equorum strain SS6 prokMSA_id:063404 AY126197 Staphylococcus equorum strain SS808 prokMSA_id:063402 AY126198 Staphylococcus equorum strain Sx207 prokMSA_id:063403 AY126199 Staphylococcus equorum strain Sx819 prokMSA_id:063401 AY126200 Staphylococcus haemolyticus strain 99M5 prokMSA_id:063400 AY126202 Staphylococcus haemolyticus strain D7 prokMSA_id:063397 AY126203 Staphylococcus haemolyticus strain N11 prokMSA_id:055301 AY126204 Staphylococcus lentus strain AS3 prokMSA_id:063399 AY126205 Staphylococcus lentus strain AS4 prokMSA_id:063398 AY126206 Staphylococcus lentus strain BS2 prokMSA_id:063394 AY126207 Staphylococcus pasteuri strain 22K27 prokMSA_id:063396 AY126208 Staphylococcus pasteuri strain 5SI1K prokMSA_id:056013 AY126210 Staphylococcus pasteuri strain G6bi prokMSA_id:063393 AY126211 Staphylococcus pasteuri strain G6g prokMSA_id:063391 AY126212 Staphylococcus pasteuri strain MS031 prokMSA_id:063390 AY126213 Staphylococcus pasteuri strain Q5 prokMSA_id:063389 AY126214 Staphylococcus pulvereri strain 10K14 prokMSA_id:063387 AY126215 Staphylococcus pulvereri strain 13K14 prokMSA_id:063386 AY126216 Staphylococcus pulvereri strain 37K35 prokMSA_id:055479 AY126217 Staphylococcus pulvereri strain S983 prokMSA_id:063385 AY126218 Staphylococcus pulvereri strain Sx203 prokMSA_id:063382 AY126219 Staphylococcus saprophyticus strain 67K3 prokMSA_id:063383 AY126220 Staphylococcus saprophyticus strain BM1 prokMSA_id:063384 AY126221 Staphylococcus saprophyticus strain C12 prokMSA_id:063381 AY126222 Staphylococcus saprophyticus strain C5 prokMSA_id:063380 AY126223 Staphylococcus saprophyticus strain C7 prokMSA_id:063379 AY126224 Staphylococcus saprophyticus strain C9 prokMSA_id:063377 AY126225 Staphylococcus saprophyticus strain CF8 prokMSA_id:063378 AY126226 Staphylococcus saprophyticus strain GB1 prokMSA_id:063376 AY126227 Staphylococcus saprophyticus strain N6 prokMSA_id:056509 AY126228 Staphylococcus saprophyticus strain N9 prokMSA_id:063374 AY126229 Staphylococcus saprophyticus strain SI2K prokMSA_id:055637 AY126230 Staphylococcus sciuri strain L1 prokMSA_id:063375 AY126231 Staphylococcus sciuri strain LA3 prokMSA_id:063372 AY126232 Staphylococcus simulans strain CM1 prokMSA_id:063373 AY126233 Staphylococcus simulans strain CM4 prokMSA_id:063367 AY126234 Staphylococcus simulans strain K9 prokMSA_id:063371 AY126235 Staphylococcus succinus strain 1SI6K prokMSA_id:063369 AY126236 Staphylococcus succinus strain 2K07 prokMSA_id:063368 AY126237 Staphylococcus succinus strain 2SI2K prokMSA_id:063366 AY126238 Staphylococcus succinus strain 5SE12K prokMSA_id:063370 AY126239 Staphylococcus succinus strain 77K3 prokMSA_id:063365 AY126240 Staphylococcus succinus strain Sx726 prokMSA_id:055871 AY126241 Staphylococcus succinus strain Sx878 prokMSA_id:063364 AY126242 Staphylococcus warneri strain E3a prokMSA_id:063363 AY126244 Staphylococcus warneri strain ES1 prokMSA_id:063361 AY126245 Staphylococcus warneri strain S407 prokMSA_id:056587 AY126246 Staphylococcus xylosus strain DSM20266T prokMSA_id:063362 AY126247 Staphylococcus xylosus strain 26K26 prokMSA_id:063360 AY126248 Staphylococcus xylosus strain 42M06 prokMSA_id:055689 AY126249 Staphylococcus xylosus strain 4K07 prokMSA_id:063359 AY126251 Staphylococcus xylosus strain 66K3 prokMSA_id:063357 AY126252 Staphylococcus xylosus strain AS14 prokMSA_id:063358 AY126253 Staphylococcus xylosus strain AS26 prokMSA_id:055348 AY126254 Staphylococcus xylosus strain BS1 prokMSA_id:063356 AY126255 Staphylococcus xylosus strain BS20 prokMSA_id:063353 AY126256 Staphylococcus xylosus strain L6 prokMSA_id:063354 AY126257 Staphylococcus xylosus strain P1 prokMSA_id:063355 AY126259 Staphylococcus xylosus strain SPR35 prokMSA_id:063352 AY126260 Staphylococcus xylosus strain SS4 prokMSA_id:063351 AY126261 Staphylococcus xylosus strain SS4-1 prokMSA_id:063349 AY126264 Staphylococcus arlettae strain P9 prokMSA_id:063344 AY126271 Staphylococcus xylosus strain L10 prokMSA_id:076666 AY159171 MF_isolate_43 prokMSA_id:078985 AY180965 Staphylococcus haemolyticus isolate ML1 prokMSA_id:080874 AY186059 Staphylococcus warneri strain PB1 prokMSA_id:078480 AY189596 Staphylococcus sp. clone EarCan069 prokMSA_id:079009 AY189612 Staphylococcus sp. clone EarCan085 prokMSA_id:078861 AY189614 Staphylococcus sp. clone EarCan087 prokMSA_id:079055 AY189636 clone EarCan109 prokMSA_id:084457 AY227253 Staphylococcus xylosus strain S087 prokMSA_id:084878 AY227254 Staphylococcus xylosus strain S480 prokMSA_id:086004 AY227255 Staphylococcus xylosus strain S734 prokMSA_id:084761 AY227256 Staphylococcus xylosus strain S892 prokMSA_id:083339 AY227257 Staphylococcus xylosus strain S904 prokMSA_id:085053 AY227258 Staphylococcus xylosus strain S971 prokMSA_id:082903 AY227259 Staphylococcus xylosus strain Sx011 prokMSA_id:084833 AY227260 Staphylococcus xylosus strain Sx015 prokMSA_id:082804 AY227261 Staphylococcus xylosus strain Sx022 prokMSA_id:086212 AY227262 Staphylococcus xylosus strain Sx083 prokMSA_id:086442 AY227263 Staphylococcus xylosus strain Sx1256 prokMSA_id:085084 AY227264 Staphylococcus xylosus strain Sx910 prokMSA_id:082522 AY227265 Staphylococcus equorum strain S420 prokMSA_id:085862 AY227266 Staphylococcus equorum strain Sx908 prokMSA_id:084182 AY227267 Staphylococcus pasteuri strain M051 prokMSA_id:083385 AY227268 Staphylococcus saprophyticus strain S1004 prokMSA_id:085742 AY227269 Staphylococcus saprophyticus strain Sx160 prokMSA_id:082785 AY227270 Staphylococcus succinus strain Sx877 prokMSA_id:086190 AY227271 Staphylococcus pulvereri strain S339 prokMSA_id:084754 AY227272 Staphylococcus pulvereri strain Sx219 prokMSA_id:085784 AY227273 Staphylococcus xylosus strain S878 prokMSA_id:085949 AY227274 Staphylococcus xylosus strain Sx238 prokMSA_id:084549 AY227275 Staphylococcus xylosus strain S173 prokMSA_id:082853 AY227276 Staphylococcus xylosus strain S1007 prokMSA_id:083424 AY227277 Staphylococcus xylosus strain S535 prokMSA_id:084993 AY227278 Staphylococcus saprophyticus strain S164 prokMSA_id:085688 AY227279 Staphylococcus saprophyticus strain Sx169 prokMSA_id:085545 AY227280 Staphylococcus pulvereri strain Sx218 prokMSA_id:086039 AY227281 Staphylococcus pulvereri strain Sx219-1 prokMSA_id:083203 AY227282 Staphylococcus warneri strain Sx860 prokMSA_id:085193 AY227283 Staphylococcus sp. S069 prokMSA_id:098261 AY239464 Staphylococcus sp. cTPY-19 complete prokMSA_id:085231 AY256618 DGGE band B2R-7 prokMSA_id:091499 AY266425 Marine SIMO-1586 prokMSA_id:091458 AY266427 Marine SIMO-1587 prokMSA_id:091275 AY266439 Marine SIMO-1597 prokMSA_id:086882 AY269869 Staphylococcus sp. 6 prokMSA_id:087320 AY269872 Staphylococcus sp. 9 prokMSA_id:087509 AY269873 Staphylococcus sp. 10 prokMSA_id:083779 AY275500 Staphylococcus warneri isolate MSB20 prokMSA_id:085336 AY275501 Staphylococcus warneri isolate MSB2042 prokMSA_id:082859 AY275502 Staphylococcus warneri isolate MSB2065 prokMSA_id:083802 AY275503 Staphylococcus sp. MSB2024 prokMSA_id:083210 AY275504 Staphylococcus sp. MSB2005 prokMSA_id:085853 AY275505 Staphylococcus sp. MSB2032 prokMSA_id:088289 AY304999 Staphylococcus aureus strain HPC250 5' prokMSA_id:089990 AY305000 Staphylococcus aureus strain HPC250 3' prokMSA_id:088423 AY307362 Staphylococcus sp. I26 prokMSA_id:089258 AY307368 Staphylococcus sp. M70 prokMSA_id:094657 AY375295 Staphylococcus sciuri strain MS01 prokMSA_id:094838 AY375296 Staphylococcus pulvereri strain MS010 prokMSA_id:094545 AY375298 Staphylococcus epidermidis strain MS09 prokMSA_id:095426 AY421709 Staphylococcus equorum strain SFR16 prokMSA_id:097374 AY421710 Staphylococcus equorum strain SFR44 prokMSA_id:096600 AY421711 Staphylococcus equorum strain SFR45 prokMSA_id:097428 AY421712 Staphylococcus epidermidis strain SFR5 prokMSA_id:098473 AY421713 Staphylococcus pasteuri strain SFR2 prokMSA_id:097479 AY421714 Staphylococcus warneri strain SFR12 prokMSA_id:096394 AY421715 Staphylococcus saprophyticus strain SFR36 prokMSA_id:014861 NONE Staphylococcus epidermidis ATCC 14990 . prokMSA_id:014902 NONE Staphylococcus "aerophilus". prokMSA_id:014845 U02910 Staphylococcus aureus ATCC 25923. prokMSA_id:014852 U02911 Staphylococcus auricularis str. WK811M ATCC 33753 . prokMSA_id:014858 U02913 Staphylococcus epidermidis ATCC 14990 . prokMSA_id:014896 U02922 Staphylococcus saccharolyticus ATCC 14953 . prokMSA_id:033406 U31486 low G+C gram-positive RS3 rrs prokMSA_id:014833 U58349 str. L-81. prokMSA_id:014813 U78937 str. R2A180. prokMSA_id:014801 X86635 Staphylococcus sp. str. 1F-03. prokMSA_id:014865 X86637 Staphylococcus sp. str. 1F-20. prokMSA_id:014802 X86638 Staphylococcus sp. str. 1F-21. prokMSA_id:034325 X86643 Staphylococcus sp. strain S2-06 prokMSA_id:014819 X86644 Staphylococcus sp. str. S2-12. prokMSA_id:014820 X86645 Staphylococcus sp. str. S5-91. prokMSA_id:014821 X86646 Staphylococcus sp. str. S5-92. prokMSA_id:014815 X86647 Staphylococcus sp. str. S5-93. prokMSA_id:014822 X86649 Staphylococcus sp. str. S5-95. 2.30.7.12.2 MAC.CASEOLYTICUS_SUBGROUP 30 seqs 2.30.7.12.2.001 OTU 12 seqs prokMSA_id:061797 AB079788 Micrococcus luteus prokMSA_id:067824 AF349917 clone 20CR prokMSA_id:089445 AJ576067 Macrococcus equipercicus clone 30Y prokMSA_id:064394 AY119685 Macrococcus unicus complete prokMSA_id:055999 AY119686 Macrococcus brunensis complete prokMSA_id:064393 AY119687 Macrococcus lamae complete prokMSA_id:014910 D83359 Macrococcus caseolyticus str. DD 4508 MAFF 911387. prokMSA_id:014905 Y15711 Macrococcus caseolyticus str. DD 4508 ATCC 13548 . prokMSA_id:014911 Y15712 Macrococcus equipercicus str. H8h3. prokMSA_id:014912 Y15713 Macrococcus carouselicus str. H8b16. prokMSA_id:014908 Y15714 Macrococcus bovicus str. L2F4. prokMSA_id:014909 Z26892 Macrococcus caseolyticus. 2.30.7.12.2.002 OTU 1 seq prokMSA_id:028012 AY028926 Jeotgalibacillus psychrophilus 2.30.7.12.2.003 OTU 1 seq prokMSA_id:065687 AF507697 soil clone C065 2.30.7.12.2.004 OTU 1 seq prokMSA_id:067029 AJ306788 clone SHA-95 2.30.7.12.2.005 OTU 1 seq prokMSA_id:014906 AF145815 clone K20-12. 2.30.7.12.2.006 OTU 1 seq prokMSA_id:014907 AF146253 clone CLEAR-31. 2.30.7.12.2.007 OTU 1 seq prokMSA_id:080341 AY193131 candidate division OD1 clone Bol51 2.30.7.12.2.008 OTU 1 seq prokMSA_id:091858 AY345511 clone W4A-A26 2.30.7.12.2.999 poor quality 11 seqs prokMSA_id:033016 AF194187 n12r prokMSA_id:035574 AF379684 clone SL5 prokMSA_id:075571 AF432712 clone C16.33WL prokMSA_id:076736 AF432713 clone C17.15WL prokMSA_id:059439 AF540826 clone DP10-3 prokMSA_id:050814 AJ311429 maize rhizosphere c16_68 prokMSA_id:048128 AY037760 earthworm cast clone C158 prokMSA_id:063441 AY126153 Macrococcus caseolyticus strain 5SE13K prokMSA_id:063439 AY126154 Macrococcus caseolyticus strain E6 prokMSA_id:063437 AY126156 Macrococcus caseolyticus strain LA2 prokMSA_id:063438 AY126157 Macrococcus caseolyticus strain S332 2.30.7.12.3 GEM.HAEMOLYSANS_SUBGROUP 61 seqs 2.30.7.12.3.001 OTU 1 seq prokMSA_id:026423 AY028927 Salinicoccus hispanicus 2.30.7.12.3.002 OTU 2 seqs prokMSA_id:031771 AF237976 Salinicoccus roseus prokMSA_id:014913 X94559 Salinicoccus roseus DSM 5351 . 2.30.7.12.3.003 OTU 2 seqs prokMSA_id:044574 AY028925 Jeotgalibacillus halotolerans prokMSA_id:036078 AY038633 clone GL178.18 2.30.7.12.3.004 OTU 1 seq prokMSA_id:037750 AF275710 Hailaer soda lake T8 2.30.7.12.3.005 OTU 5 seqs prokMSA_id:040754 AF202009 human oral A18 prokMSA_id:052225 AY005050 Gemella sp. oral strain A31SC prokMSA_id:082724 AY244781 Gemella bergeri prokMSA_id:014915 Y13363 Gemella 1754-94 str. 1754-94. prokMSA_id:014920 Y13365 Gemella 617-93 str. 617-93. 2.30.7.12.3.006 OTU 1 seq prokMSA_id:045265 AJ251987 Gemella sp. M60449/99/1 T 2.30.7.12.3.007 OTU 8 seqs prokMSA_id:014921 AF058377 Gemella Gemella clone MT12. prokMSA_id:049639 AF202007 human oral A17 prokMSA_id:076927 AJ534689 Gemella haemolysans clone S15A-MN66 prokMSA_id:050458 AY005051 Gemella sp. oral strain C24KA prokMSA_id:014918 L14326 Gemella haemolysans ATCC 10379 . prokMSA_id:014914 L14327 Gemella morbillorum ATCC 27824 . prokMSA_id:014922 Y13364 Gemella sanguinis str. 2045-94 CCUG 37820 . prokMSA_id:014916 Y13366 Gemella 933-88 str. 933-88. 2.30.7.12.3.008 OTU 1 seq prokMSA_id:014917 AB013835 str. 70.i. 2.30.7.12.3.009 OTU 1 seq prokMSA_id:014919 AF142888 clone EKHO-4. 2.30.7.12.3.010 OTU 1 seq prokMSA_id:073226 AF455060 clone B6 2.30.7.12.3.011 OTU 1 seq prokMSA_id:080961 AY188939 Marine P_wp0225 2.30.7.12.3.012 OTU 1 seq prokMSA_id:088561 AY245456 low G+C Gram-positive ML17_DCC1 2.30.7.12.3.999 poor quality 36 seqs prokMSA_id:028586 AB028331 oral SH10 prokMSA_id:051530 AB028336 oral SH15 prokMSA_id:024656 AB028359 oral SH71 prokMSA_id:043955 AB028368 oral AP60-9 prokMSA_id:030142 AB028374 oral AP60-15 prokMSA_id:048074 AB028382 oral AP60-23 prokMSA_id:068198 AF365529 clone BM89MF5BG8b prokMSA_id:038055 AF422638 clone d026 prokMSA_id:064819 AF434118 firmicute clone M1-1-10 prokMSA_id:064818 AF434119 firmicute clone P1-1-11 prokMSA_id:064817 AF434120 firmicute clone P1-1-3 prokMSA_id:064816 AF434121 firmicute clone S5-1-10 prokMSA_id:064815 AF434122 firmicute clone S5-1-1 prokMSA_id:064811 AF434123 firmicute clone S5-1-20 prokMSA_id:064812 AF434124 firmicute clone S5-1-26 prokMSA_id:064813 AF434125 firmicute clone S5-1-28 prokMSA_id:064814 AF434126 firmicute clone S5-1-2 prokMSA_id:064810 AF434127 firmicute clone S5-1-38 prokMSA_id:064809 AF434128 firmicute clone S5-1-3 prokMSA_id:064808 AF434129 firmicute clone M1-1-31 prokMSA_id:064807 AF434130 firmicute clone M3-1-9 prokMSA_id:064806 AF434131 firmicute clone P1-1-31 prokMSA_id:064805 AF434132 firmicute clone M2-1-13 prokMSA_id:064804 AF434133 firmicute clone M2-1-15 prokMSA_id:064803 AF434134 firmicute clone M2-1-30 prokMSA_id:064801 AF434135 firmicute clone M2-1-9 prokMSA_id:064802 AF434136 firmicute clone M3-1-1 prokMSA_id:064799 AF434137 firmicute clone P1-1-30 prokMSA_id:064800 AF434138 firmicute clone P2-1-13 prokMSA_id:064798 AF434139 firmicute clone S1-1-24 prokMSA_id:064797 AF434140 firmicute clone S5-1-25 prokMSA_id:081622 AY080977 Salinicoccus sp. clone ckl15 prokMSA_id:093111 AY328901 Salinicoccus marinus prokMSA_id:014923 M58799 Gemella haemolysans ATCC 10379 . prokMSA_id:036255 Y17280 Gemella palaticanis prokMSA_id:043637 Z77616 2-100 C23 2.30.7.12.4 B.CEREUS_SUBGROUP 455 seqs 2.30.7.12.4.003 OTU 315 seqs prokMSA_id:014956 AB002640 str. HTA484. prokMSA_id:014950 AB003391 str. sp6. prokMSA_id:014965 AB004761 unnamed organism. prokMSA_id:014953 AB010843 str. HTE856. prokMSA_id:018433 AB021192 Bacillus mycoides prokMSA_id:026368 AB021199 Bacillus weihenstephanensis prokMSA_id:056041 AB050630 Bacillus cereus prokMSA_id:045153 AB067810 Bacillus sp. KPU 0013 prokMSA_id:037954 AB074672 Low G+C Gram-positive D-N1-11A prokMSA_id:045702 AB074680 Low G+C Gram-positive D-N2-1A prokMSA_id:043462 AB074681 Low G+C Gram-positive D-N2-2B prokMSA_id:029140 AB074682 Low G+C Gram-positive D-N2-2C prokMSA_id:024501 AB074683 Low G+C Gram-positive D-N2-3A prokMSA_id:041947 AB074696 Low G+C Gram-positive D-Su1-21A prokMSA_id:025132 AB074701 Low G+C Gram-positive D-Su1-4B prokMSA_id:022323 AB074702 Low G+C Gram-positive D-Su1-5 prokMSA_id:085964 AB106345 Bacillus cereus strain: FRA000041 prokMSA_id:096762 AB114266 Bacillus sp. B913-2 prokMSA_id:091195 AB116121 Bacillus mycoides strain:S31 prokMSA_id:091444 AB116122 Bacillus thuringiensis strain:S32 prokMSA_id:091655 AB116124 Bacillus anthracis strain:S51 prokMSA_id:084080 AE016998 Bacillus cereus ATCC 14579 section 1 of 18 of the complete genome prokMSA_id:086676 AE016999 Bacillus cereus ATCC 14579 section 2 of 18 of the complete genome prokMSA_id:085155 AE017000 Bacillus cereus ATCC 14579 section 3 of 18 of the complete genome prokMSA_id:082523 AE017013 Bacillus cereus ATCC 14579 section 16 of 18 of the complete genome prokMSA_id:085177 AE017024 Bacillus anthracis str. Ames section 1 of 18 of the complete genome prokMSA_id:086137 AE017025 Bacillus anthracis str. Ames section 2 of 18 of the complete genome prokMSA_id:086482 AE017026 Bacillus anthracis str. Ames section 3 of 18 of the complete genome prokMSA_id:086702 AE017039 Bacillus anthracis str. Ames section 16 of 18 of the complete genome prokMSA_id:014957 AF027659 Bacillus BSID723 str. BSID723. prokMSA_id:014955 AF076031 Bacillus cereus. prokMSA_id:014949 AF144645 Bacillus mycoides str. DRC1. prokMSA_id:028652 AF155950 Bacillus anthracis strain Ames prokMSA_id:026371 AF155951 Bacillus anthracis strain Delta Ames prokMSA_id:047699 AF155952 Bacillus cereus strain 9620 prokMSA_id:035857 AF155953 Bacillus thuringiensis strain 4042 prokMSA_id:050398 AF155954 Bacillus thuringiensis strain 4Q281 prokMSA_id:046656 AF155955 Bacillus thuringiensis strain B8 prokMSA_id:052128 AF155956 Bacillus mycoides strain 6462 prokMSA_id:035163 AF155957 Bacillus mycoides strain 10206 prokMSA_id:049323 AF155958 Bacillus cereus strain Delaporte prokMSA_id:014969 AF157112 Bacillus thuringiensis str. 82347. prokMSA_id:014971 AF160221 Bacillus thuringiensis. prokMSA_id:021729 AF172711 Bacillus thuringiensis prokMSA_id:025802 AF176321 Bacillus anthracis prokMSA_id:031673 AF176322 Bacillus cereus prokMSA_id:025668 AF206326 Bacillus cereus prokMSA_id:025780 AF227848 Bacillus sp. 82344 prokMSA_id:039946 AF234842 Bacillus sp. FO-011 prokMSA_id:039453 AF234860 Bacillus mycoides prokMSA_id:034617 AF274244 Bacillus cereus prokMSA_id:016457 AF290545 Bacillus thuringiensis strain ATCC10792 prokMSA_id:019663 AF290546 Bacillus cereus strain ATCC11778 prokMSA_id:037153 AF290547 Bacillus cereus strain ATCC14579 prokMSA_id:024287 AF290548 Bacillus cereus strain ATCC31293 prokMSA_id:070778 AF290549 Bacillus thuringiensis strain ATCC33679 prokMSA_id:070317 AF290550 Bacillus cereus strain ATCC43881 prokMSA_id:071586 AF290551 Bacillus cereus strain ATCC53522 prokMSA_id:074064 AF290552 Bacillus anthracis strain Sterne prokMSA_id:072365 AF290553 Bacillus anthracis strain Vollum prokMSA_id:025241 AF290554 Bacillus cereus strain AH 521 prokMSA_id:072703 AF290555 Bacillus cereus strain AH 527 prokMSA_id:073202 AF290556 Bacillus sp. AH 533 prokMSA_id:070673 AF290557 Bacillus sp. AH 540 prokMSA_id:020900 AF290558 Bacillus sp. AH 628 prokMSA_id:044252 AF290559 Bacillus sp. AH 648 prokMSA_id:039601 AF290560 Bacillus sp. AH 665 prokMSA_id:016497 AF290561 Bacillus sp. AH 678 prokMSA_id:022695 AF290562 Bacillus sp. AH 526 prokMSA_id:051269 AF296655 Bacillus sp. 5A3 small subunit prokMSA_id:020962 AF350926 Bacillus sp. 240B1 prokMSA_id:025447 AF363440 Bacillus cereus strain ATCC10702 prokMSA_id:041630 AF363441 Bacillus cereus isolate DL5 prokMSA_id:023080 AF363442 Bacillus cereus isolate DL115 prokMSA_id:030430 AF363443 Bacillus cereus isolate DL122 prokMSA_id:048709 AF363444 Bacillus cereus isolate DL137 prokMSA_id:032677 AF363445 Bacillus cereus isolate DL144 prokMSA_id:028455 AF385082 Bacillus sp. F26 prokMSA_id:028561 AF390086 Bacillus cereus strain S-5 prokMSA_id:020169 AF390088 Bacillus anthracis strain W-21 prokMSA_id:040803 AF393658 Bacillus thuringiensis strain DM55 prokMSA_id:064548 AF397398 Bacillus sp. A23 prokMSA_id:064549 AF397399 Bacillus sp. A24 prokMSA_id:024784 AF406633 Bacillus sp. CMB03 prokMSA_id:017205 AF417874 Bacillus sp. YSS/2001-3 prokMSA_id:039328 AF441728 Bacillus sp. Kaza-31 prokMSA_id:028214 AF441732 Bacillus sp. Kaza-37 prokMSA_id:068769 AF479333 Glacial ice G500K-2 prokMSA_id:068744 AF479356 Glacial ice G50-TS3 prokMSA_id:055839 AF479367 Glacial ice SB12K-9-4 prokMSA_id:068733 AF479369 Glacial ice SB100-8-1 prokMSA_id:056648 AF487788 Bacillus sp. RZ-212 prokMSA_id:084334 AF500212 Bacillus sp. CJ11076 prokMSA_id:072980 AF503203 Bacillus sp. SVM prokMSA_id:056170 AF506057 Bacillus sp. LCSAOTU7 prokMSA_id:060367 AF513473 Bacillaceae PH27B prokMSA_id:063455 AF522353 Bacillus cereus SH 01 prokMSA_id:063007 AF526899 Bacillus cereus strain 83-5c rrn prokMSA_id:063003 AF526900 Bacillus thuringiensis strain 83-3c rrn prokMSA_id:059267 AF540983 Bacillus sp. 080702E prokMSA_id:014954 AJ000987 clone DA095. prokMSA_id:061990 AJ244688 Bacillus cf. cereus V4.BE.30 prokMSA_id:030826 AJ288157 Bacillus cereus isolate Ki 2l prokMSA_id:074153 AJ310098 Bacillus cereus ATCC 14893 = CIP 5832 prokMSA_id:049809 AJ310100 Bacillus cereus biovar toyoi CNCM I-1012/NCIB 40112 prokMSA_id:076648 AJ318900 Bacillus mycoides strain EN3 prokMSA_id:075154 AJ318901 Bacillus mycoides strain MH48 prokMSA_id:064280 AJ491706 Bacillus thuringiensis strain P2 prokMSA_id:064276 AJ491711 Bacillus thuringiensis strain P7 prokMSA_id:059283 AJ508706 Bacillus cereus isolate MBRG 4.21 prokMSA_id:078536 AJ534864 Bacillus sp. DW137 isolate DW137 prokMSA_id:079142 AJ539225 Bacillus cereus strain A78 prokMSA_id:079578 AJ539226 clone AY13 prokMSA_id:087469 AJ563290 Bacillus cereus strain VA1 prokMSA_id:089913 AJ577274 Bacillus cereus strain NS 58 prokMSA_id:089224 AJ577275 Bacillus cereus strain B 308 prokMSA_id:090668 AJ577276 Bacillus cereus strain F 5881/94 prokMSA_id:089749 AJ577277 Bacillus cereus strain B 203 prokMSA_id:090071 AJ577278 Bacillus cereus strain LKT 1/1 prokMSA_id:088934 AJ577279 Bacillus cereus strain 7pk4 prokMSA_id:088383 AJ577280 Bacillus cereus strain NC 7401 prokMSA_id:088623 AJ577281 Bacillus cereus strain B 412 prokMSA_id:088453 AJ577282 Bacillus cereus strain RIVM BC00067 prokMSA_id:090400 AJ577283 Bacillus cereus strain RIVM BC00068 prokMSA_id:090341 AJ577284 Bacillus cereus strain LKT 1/2 prokMSA_id:089200 AJ577285 Bacillus cereus strain B 319 prokMSA_id:088674 AJ577286 Bacillus cereus strain OH 599 prokMSA_id:089137 AJ577287 Bacillus cereus strain F 3371/93 prokMSA_id:089369 AJ577288 Bacillus cereus strain ATCC 4342 prokMSA_id:088986 AJ577289 Bacillus cereus strain B 102 prokMSA_id:089896 AJ577290 Bacillus cereus strain ATCC 10987 prokMSA_id:090565 AJ577291 Bacillus cereus strain F 528/94 prokMSA_id:090438 AJ577292 Bacillus cereus strain B 204 prokMSA_id:090579 AJ578036 Bacillus anthracis strain NC08234-02 prokMSA_id:093716 AJ581966 Bacillus thuringiensis strain 3R2-29 prokMSA_id:035362 AY043083 Bacillus anthracis prokMSA_id:035737 AY048782 Bacillus sp. P16 prokMSA_id:038188 AY048851 Bacillus sp. CMB26 prokMSA_id:062451 AY124766 Bacillus sp. FP1/2002 prokMSA_id:060008 AY129651 Bacillus cereus strain AL1 prokMSA_id:060446 AY131217 Bacillus sp. Fa7 prokMSA_id:060443 AY131220 Bacillus sp. Fa25 prokMSA_id:070008 AY138270 Bacillus cereus strain H1439 prokMSA_id:070889 AY138271 Bacillus cereus strain G8639 prokMSA_id:070107 AY138272 Bacillus cereus strain 2000031486 prokMSA_id:070161 AY138273 Bacillus cereus strain G9667 prokMSA_id:058978 AY138274 Bacillus cereus strain 2000031498 prokMSA_id:058979 AY138275 Bacillus cereus strain LRN prokMSA_id:058980 AY138276 Bacillus cereus strain 2000031491 prokMSA_id:058975 AY138277 Bacillus cereus strain 2000031503 prokMSA_id:058977 AY138278 Bacillus cereus strain G3317 prokMSA_id:058976 AY138279 Bacillus cereus strain 2000031513 prokMSA_id:072393 AY138280 Bacillus thuringiensis strain 2000032757 prokMSA_id:073565 AY138281 Bacillus thuringiensis strain 2000032756 prokMSA_id:072615 AY138282 Bacillus thuringiensis strain 2000032755 prokMSA_id:073059 AY138283 Bacillus thuringiensis strain 2002007400 prokMSA_id:070527 AY138284 Bacillus thuringiensis strain 2002017401 prokMSA_id:072196 AY138285 Bacillus thuringiensis strain 2000031509 prokMSA_id:072810 AY138286 Bacillus thuringiensis strain 2000031508 prokMSA_id:071443 AY138287 Bacillus thuringiensis strain 2000031496 prokMSA_id:070696 AY138288 Bacillus thuringiensis strain 2000031494 prokMSA_id:072680 AY138289 Bacillus thuringiensis strain 2000031485 prokMSA_id:070620 AY138290 Bacillus thuringiensis strain 2000031482 prokMSA_id:074004 AY138291 Bacillus anthracis strain 2001039370 prokMSA_id:069949 AY138292 Bacillus anthracis strain 2000032601 prokMSA_id:069875 AY138293 Bacillus anthracis strain 2000032600 prokMSA_id:074123 AY138294 Bacillus anthracis strain 2000031782 prokMSA_id:070554 AY138295 Bacillus anthracis strain 2000031649 prokMSA_id:070084 AY138296 Bacillus anthracis strain 2000031648 prokMSA_id:073214 AY138297 Bacillus anthracis strain 2000031658 prokMSA_id:073801 AY138298 Bacillus anthracis strain 2000031669 prokMSA_id:071460 AY138299 Bacillus anthracis strain 2000031668 prokMSA_id:074309 AY138300 Bacillus anthracis strain 2000031654 prokMSA_id:070698 AY138301 Bacillus anthracis strain 2002007712 prokMSA_id:069963 AY138302 Bacillus anthracis strain 2002007711 prokMSA_id:070858 AY138303 Bacillus anthracis strain 2002017157 prokMSA_id:072254 AY138304 Bacillus anthracis strain 2002017153 prokMSA_id:069812 AY138305 Bacillus anthracis strain 2002017150 prokMSA_id:071141 AY138306 Bacillus anthracis strain 2002017149 prokMSA_id:074146 AY138307 Bacillus anthracis strain 2002017090 prokMSA_id:073113 AY138308 Bacillus anthracis strain 2002019003 prokMSA_id:069869 AY138309 Bacillus anthracis strain 2002017085 prokMSA_id:072260 AY138310 Bacillus anthracis strain 2002017084 prokMSA_id:073336 AY138311 Bacillus anthracis strain 2002017091 prokMSA_id:072470 AY138312 Bacillus anthracis strain 2002019002 prokMSA_id:073089 AY138313 Bacillus anthracis strain 2002019187 prokMSA_id:071523 AY138314 Bacillus anthracis strain 2002019185 prokMSA_id:069902 AY138315 Bacillus anthracis strain 2002007642 prokMSA_id:073705 AY138316 Bacillus anthracis strain 2002007621 prokMSA_id:072920 AY138317 Bacillus anthracis strain 2002007620 prokMSA_id:070757 AY138318 Bacillus anthracis strain 2002007619 prokMSA_id:071839 AY138319 Bacillus anthracis strain 2000032764 prokMSA_id:070303 AY138320 Bacillus anthracis strain 2000032763 prokMSA_id:071922 AY138321 Bacillus anthracis strain 2000032762 prokMSA_id:069819 AY138322 Bacillus anthracis strain 2000032761 prokMSA_id:071452 AY138323 Bacillus anthracis strain 2000032760 prokMSA_id:073889 AY138324 Bacillus anthracis strain 2002007582 prokMSA_id:074425 AY138325 Bacillus anthracis strain 2002007581 prokMSA_id:074030 AY138326 Bacillus anthracis strain 2002007460 prokMSA_id:072247 AY138327 Bacillus anthracis strain 2002007459 prokMSA_id:069870 AY138328 Bacillus anthracis strain 2002007458 prokMSA_id:071582 AY138329 Bacillus anthracis strain 2002008812 prokMSA_id:070771 AY138330 Bacillus anthracis strain 2002008802 prokMSA_id:071181 AY138331 Bacillus anthracis strain 2000032708 prokMSA_id:074110 AY138332 Bacillus anthracis strain 2000032707 prokMSA_id:073337 AY138333 Bacillus anthracis strain 2000032711 prokMSA_id:071007 AY138334 Bacillus anthracis strain 2000032710 prokMSA_id:070014 AY138335 Bacillus anthracis strain 2002008815 prokMSA_id:071772 AY138336 Bacillus anthracis strain 2002008813 prokMSA_id:072756 AY138337 Bacillus anthracis strain 2002008805 prokMSA_id:072035 AY138338 Bacillus anthracis strain 2000032706 prokMSA_id:070515 AY138339 Bacillus anthracis strain 2002008803 prokMSA_id:073765 AY138340 Bacillus anthracis strain 2002007015 prokMSA_id:070252 AY138341 Bacillus anthracis strain 2002007648 prokMSA_id:072972 AY138342 Bacillus anthracis strain 2002007488 prokMSA_id:071914 AY138343 Bacillus anthracis strain 2002007549 prokMSA_id:074324 AY138344 Bacillus anthracis strain 2002007547 prokMSA_id:073036 AY138345 Bacillus anthracis strain 2000031075 prokMSA_id:071893 AY138346 Bacillus anthracis strain 2000031259 prokMSA_id:072016 AY138347 Bacillus anthracis strain 200003b1887B prokMSA_id:072121 AY138348 Bacillus anthracis strain 2000031887 prokMSA_id:071620 AY138349 Bacillus anthracis strain 2000031136 prokMSA_id:070758 AY138350 Bacillus anthracis strain 2000031368 prokMSA_id:073697 AY138351 Bacillus anthracis strain 2000031078 prokMSA_id:070693 AY138352 Bacillus anthracis strain 2000031666 prokMSA_id:072712 AY138353 Bacillus anthracis strain 2000031076 prokMSA_id:069776 AY138354 Bacillus anthracis strain 2000031244 prokMSA_id:074303 AY138355 Bacillus anthracis strain 2002007651 prokMSA_id:074200 AY138356 Bacillus anthracis strain 2002007650 prokMSA_id:072526 AY138357 Bacillus anthracis strain 2002007649 prokMSA_id:069823 AY138358 Bacillus anthracis strain AMES prokMSA_id:071325 AY138359 Bacillus anthracis strain 2001039382 prokMSA_id:070588 AY138360 Bacillus anthracis strain 2001039387 prokMSA_id:070973 AY138361 Bacillus anthracis strain 2001039360 prokMSA_id:071161 AY138362 Bacillus anthracis strain 2001039361 prokMSA_id:072243 AY138363 Bacillus anthracis strain 2002007574 prokMSA_id:073585 AY138364 Bacillus anthracis strain 2002705969 prokMSA_id:070886 AY138365 Bacillus anthracis strain 2000032642 prokMSA_id:072116 AY138366 Bacillus anthracis strain 2000031665 prokMSA_id:072368 AY138367 Bacillus anthracis strain 2000031670 prokMSA_id:071142 AY138368 Bacillus anthracis strain 2000031662 prokMSA_id:070320 AY138369 Bacillus anthracis strain 2000031661 prokMSA_id:073102 AY138370 Bacillus anthracis strain 2000031671 prokMSA_id:073992 AY138371 Bacillus anthracis strain 2000031666 prokMSA_id:073444 AY138372 Bacillus anthracis strain 2000031651 prokMSA_id:071730 AY138373 Bacillus anthracis strain 2000031653 prokMSA_id:070251 AY138374 Bacillus anthracis strain 2000031652 prokMSA_id:073434 AY138375 Bacillus anthracis strain 2000031656 prokMSA_id:074273 AY138376 Bacillus anthracis strain 2000031655 prokMSA_id:070914 AY138377 Bacillus anthracis strain 2000031659 prokMSA_id:074018 AY138378 Bacillus anthracis strain 2000031660 prokMSA_id:072441 AY138379 Bacillus anthracis strain 2000031650 prokMSA_id:071441 AY138380 Bacillus anthracis strain 2000031667 prokMSA_id:073784 AY138381 Bacillus anthracis strain 2000031663 prokMSA_id:069904 AY138382 Bacillus anthracis strain 2000031657 prokMSA_id:069928 AY138383 Bacillus anthracis strain 2000031664 prokMSA_id:075951 AY154624 earthworm cast clone c274 prokMSA_id:077709 AY159882 Bacillus sp. 98TH11323 prokMSA_id:077365 AY167812 Bacillus sp. SAFN-018 prokMSA_id:077357 AY167823 Bacillus thuringiensis strain SAFN-003 prokMSA_id:077399 AY167860 Bacillus weihenstephanensis strain SAFR-048 prokMSA_id:078840 AY176767 Bacillus thuringiensis prokMSA_id:078682 AY176769 Bacillus cereus strain HJ20 prokMSA_id:078603 AY176771 Bacillus cereus strain HJ9 prokMSA_id:079609 AY189746 Bacillus sp. B-1 prokMSA_id:090026 AY277557 Bacillus weihenstephanensis strain P2-14 prokMSA_id:086961 AY278871 Bacillus sp. CT4 prokMSA_id:086847 AY278917 Bacillus cereus prokMSA_id:087400 AY279191 Bacillus cereus strain KNUC55 prokMSA_id:087777 AY279192 Bacillus cereus strain KNUC54 prokMSA_id:087804 AY279194 Bacillus cereus strain KNUC51 prokMSA_id:086963 AY279195 Bacillus cereus strain KNUC53 prokMSA_id:087545 AY279196 Bacillus cereus strain KNUC52 prokMSA_id:088521 AY305275 Bacillus cereus strain J-1 prokMSA_id:088110 AY310302 Bacillus cereus strain BGSC 6A16 rrnE prokMSA_id:090444 AY315431 Bacillus cereus strain CC-Pm1-2 prokMSA_id:088073 AY315432 Bacillus cereus strain CC-Pm2-1 prokMSA_id:089569 AY315433 Bacillus cereus strain CC-I49 prokMSA_id:089572 AY336122 Bacillus sp. STR-Y-O prokMSA_id:091410 AY345371 L14 prokMSA_id:091183 AY345399 G19 prokMSA_id:091694 AY345416 K2-46 prokMSA_id:091648 AY345453 KA1 prokMSA_id:091863 AY345491 clone W4B-B03 prokMSA_id:091393 AY345553 H18 prokMSA_id:094646 AY373357 Bacillus mycoides strain c2 prokMSA_id:095158 AY373361 Bacillus cereus strain T1 prokMSA_id:095758 AY378211 Glacial ice ML-24 prokMSA_id:097653 AY378218 Glacial ice ML-B7 prokMSA_id:098396 AY387585 Bacillus sp. C425 prokMSA_id:014928 D16266 Bacillus cereus IAM 12605 . prokMSA_id:014961 D16281 Bacillus thuringiensis IAM 12077 . prokMSA_id:085366 NC_003997 Bacillus anthracis str. Ames complete genome prokMSA_id:082718 NC_004722 Bacillus cereus ATCC 14579 complete genome prokMSA_id:014952 Y15466 Bacillus sp. str. JJ#1. prokMSA_id:014937 Y18473 Bacillus thuringiensis str. WS2623. prokMSA_id:014929 Z84575 Bacillus cereus str. WSBC10030. prokMSA_id:014930 Z84576 Bacillus cereus str. WSBC10037. prokMSA_id:014931 Z84577 Bacillus cereus str. WSBC10201. prokMSA_id:014932 Z84578 Bacillus cereus str. WSBC10204. prokMSA_id:014933 Z84579 Bacillus cereus str. WSBC10206. prokMSA_id:014934 Z84580 Bacillus cereus str. WSBC10210. prokMSA_id:014935 Z84581 Bacillus cereus ATCC 27877. prokMSA_id:014938 Z84582 Bacillus mycoides str. MWS5303-1-4. prokMSA_id:014939 Z84583 Bacillus mycoides str. MWS5303-2-51. prokMSA_id:014940 Z84584 Bacillus thuringiensis str. WS 261. prokMSA_id:014941 Z84585 Bacillus thuringiensis str. WS 2617. prokMSA_id:014942 Z84586 Bacillus thuringiensis str. WS 2618. prokMSA_id:014943 Z84587 Bacillus thuringiensis str. WS 2625. prokMSA_id:014944 Z84588 Bacillus thuringiensis str. WS 2626. prokMSA_id:014936 Z84589 Bacillus cereus str. WSBC10030. prokMSA_id:014945 Z84590 Bacillus cereus str. WSBC10030. prokMSA_id:014946 Z84591 Bacillus mycoides str. MWS5303-1-4. prokMSA_id:014947 Z84593 Bacillus thuringiensis str. WS 2614. prokMSA_id:014948 Z84594 Bacillus thuringiensis str. WS 2617. 2.30.7.12.4.004 OTU 12 seqs prokMSA_id:031586 AB074700 Low G+C Gram-positive D-Su1-25 prokMSA_id:070144 AJ419629 Bacillus luciferensis strain LMG 18422 prokMSA_id:086989 AY291461 Bacillus luciferensis isolate NP1 prokMSA_id:086946 AY291462 Bacillus luciferensis isolate NP2 prokMSA_id:087283 AY291463 Bacillus luciferensis isolate NP3 prokMSA_id:087005 AY291464 Bacillus luciferensis isolate NP4 prokMSA_id:087101 AY291466 Bacillus luciferensis isolate NP6 prokMSA_id:087948 AY291467 Bacillus luciferensis isolate NP10 prokMSA_id:087776 AY291469 Bacillus luciferensis isolate NP30 prokMSA_id:087682 AY291470 Bacillus luciferensis isolate NP40 prokMSA_id:087462 AY291471 Bacillus luciferensis isolate NP50 prokMSA_id:087385 AY291472 Bacillus luciferensis isolate NP60 2.30.7.12.4.005 OTU 1 seq prokMSA_id:033196 AF424245 delta MERTZ_21CM_192 2.30.7.12.4.006 OTU 1 seq prokMSA_id:040011 AF332545 Bacillus thuringiensis isolate B73 2.30.7.12.4.007 OTU 1 seq prokMSA_id:047722 AF351213 delta clone 12-8 2.30.7.12.4.008 OTU 1 seq prokMSA_id:014924 D16282 Sporolactobacillus dextrus str. M-15 IAM 12380. 2.30.7.12.4.009 OTU 1 seq prokMSA_id:076532 AY154558 earthworm intestine clone lw63 2.30.7.12.4.999 poor quality 123 seqs prokMSA_id:034550 AB011785 low G+C gram-positive strain: G11137 prokMSA_id:016952 AB011790 low G+C gram-positive strain: G21021 prokMSA_id:044562 AB016621 Bacillus sp. prokMSA_id:074596 AB054938 Bacillus sp. 1703 prokMSA_id:085829 AB106347 Bacillus cereus strain: FRA000043 prokMSA_id:083161 AB107152 Firmicutes K-2054 parital prokMSA_id:082670 AB107160 Firmicutes K-2061 parital prokMSA_id:083858 AB107171 Firmicutes W-2006 parital prokMSA_id:083417 AB107181 Firmicutes W-2017 parital prokMSA_id:085135 AB107182 Firmicutes W-2018 parital prokMSA_id:014951 AF013121 Bacillus pseudomycoides. prokMSA_id:073396 AF083560 Amazonian soil M14 prokMSA_id:028190 AF083571 Amazonian soil M38c prokMSA_id:026285 AF083600 Amazonian soil P35 prokMSA_id:020666 AF128754 Soil is01 prokMSA_id:038584 AF128757 Soil is049 prokMSA_id:014970 AF148965 str. STS_R2A_54. prokMSA_id:024569 AF226220 maize root Zmrc187 prokMSA_id:018203 AF250402 Bacillus sp. C24 prokMSA_id:052038 AF346493 Bacillus sp. BAC5 prokMSA_id:023738 AF355772 Bacillus sp. NU1 prokMSA_id:038846 AF429354 CCAJG118 prokMSA_id:072318 AF442522 Bromate-reducing B6 prokMSA_id:038821 AF460884 Marine SIMO-IS120 prokMSA_id:034620 AF460906 Marine SIMO-IS131 prokMSA_id:030136 AF460947 Marine SIMO-IS206 prokMSA_id:025982 AF465387 Bacillus sp. UST991130-032 prokMSA_id:064178 AF477833 prokaryote isolate DGGE Band 43-UIB 5.4% pond prokMSA_id:067209 AF497249 Bacillus sp. BacB3 prokMSA_id:067207 AF497250 Bacillus sp. BacB4 prokMSA_id:067204 AF497257 Bacillus sp. BacB11 prokMSA_id:036865 AJ236889 Bacillus sp. isolate IDA113 prokMSA_id:037801 AJ236891 Bacillus sp. isolate IDA465 prokMSA_id:070439 AJ298924 Bacillus thuringiensis isolate CZ131 prokMSA_id:071315 AJ305310 Bacillus mycoides isolate HN51 prokMSA_id:038433 AJ316312 Bacillus sp. LMG 20247 strain LMG 20247 prokMSA_id:055464 AJ344219 Bacillus sp. EJP 102 isolate EJP 102 prokMSA_id:049597 AJ344516 Bacillus mycoides strain SFLB6 prokMSA_id:095498 AJ413201 Bacillus strain LMG 20364 prokMSA_id:067643 AJ438300 Bacillus sp. R-10947 prokMSA_id:067642 AJ438304 Bacillus sp. R-12866 prokMSA_id:064730 AJ489340 Bacillus sp. Lgg5.10 strain Lgg5.10 prokMSA_id:064727 AJ489347 Bacillus sp. Lgg10.6 strain Lgg10.6 prokMSA_id:056330 AJ489353 Bacillus sp. Lgg10.14 strain Lgg10.14 prokMSA_id:064714 AJ489360 Bacillus sp. Lgg15.4 strain Lgg15.4 prokMSA_id:064712 AJ489361 Bacillus sp. Lgg15.5 strain Lgg15.5 prokMSA_id:064713 AJ489364 Bacillus sp. Lgg15.8 strain Lgg15.8 prokMSA_id:064703 AJ489378 Bacillus sp. Lgg20.7 strain Lgg20.7 prokMSA_id:064278 AJ491707 Bacillus sp. P3 strain P3 prokMSA_id:064004 AJ491827 Bacillus mycoides strain B10 prokMSA_id:059284 AJ508705 Bacillus cereus isolate MBRG 4.25 prokMSA_id:075082 AJ517829 Bacillus thuringiensis strain KU40 prokMSA_id:076190 AJ517830 Bacillus thuringiensis strain ZS25 prokMSA_id:056993 AJ518575 clone Qui4P2-31 prokMSA_id:056873 AJ518729 clone Sai4P3-52 prokMSA_id:078499 AJ536417 Bacillus cereus isolate 1 559BP prokMSA_id:078746 AJ536418 Bacillus cereus isolate 1 583BP prokMSA_id:044791 AY037596 soil clone S068 prokMSA_id:045462 AY037682 earthworm cast clone C027 prokMSA_id:054066 AY038926 Marine SE98 prokMSA_id:025927 AY039397 Earthworm burrow B36D1 prokMSA_id:038172 AY039403 Earthworm cast C19D1 prokMSA_id:041460 AY039417 Soil S93D1 prokMSA_id:045785 AY039418 Soil S99D1 prokMSA_id:019091 AY039819 Bacillus mycoides strain jshs5 prokMSA_id:069137 AY044089 Bacillus sp. E prokMSA_id:052239 AY072259 Bacillus sp. YC00 prokMSA_id:063043 AY122302 Denitrifying TA1 prokMSA_id:063035 AY122313 Denitrifying TA2 prokMSA_id:074201 AY135480 Bacillus sp. S7-33 prokMSA_id:075458 AY159155 MF_isolate_11 prokMSA_id:075226 AY159202 RO_isolate_1 prokMSA_id:076994 AY159205 RO_isolate_6 prokMSA_id:077351 AY170457 Bacillus thuringiensis prokMSA_id:077451 AY170459 Bacillus sp. AQ30 prokMSA_id:080594 AY191233 Bacillus sp. TH220 prokMSA_id:079801 AY191234 Bacillus sp. TE202 prokMSA_id:079620 AY191235 Bacillus sp. TE204 prokMSA_id:080927 AY191236 Bacillus sp. TH205 prokMSA_id:080334 AY191241 Bacillus sp. TH203a prokMSA_id:080932 AY191242 Bacillus sp. TH203b prokMSA_id:086471 AY242537 Bacillus sp. clone A12316S prokMSA_id:085364 AY242538 Bacillus sp. clone A13616S prokMSA_id:085609 AY242539 Bacillus sp. clone A154 prokMSA_id:086596 AY242542 Bacillus sp. clone A1416S prokMSA_id:084744 AY242543 Bacillus sp. clone G1416S prokMSA_id:084732 AY242544 Bacillus sp. clone A11416S prokMSA_id:084142 AY242545 Bacillus sp. clone G3116S prokMSA_id:083379 AY242549 Bacillus sp. clone G11216S prokMSA_id:085113 AY242553 Bacillus sp. clone G2116S prokMSA_id:086418 AY242554 Bacillus sp. clone G2216S prokMSA_id:082916 AY242561 Bacillus sp. clone G1316S prokMSA_id:083110 AY242562 Bacillus sp. clone G11116S prokMSA_id:084487 AY242565 Bacillus sp. clone A1216S prokMSA_id:084247 AY242569 Bacillus sp. clone A21316S prokMSA_id:085002 AY242571 Bacillus sp. clone G31516S prokMSA_id:082747 AY242573 Bacillus sp. clone G31316S prokMSA_id:083821 AY242738 soil clone TcA1 prokMSA_id:087563 AY269874 Bacillus sp. 11 prokMSA_id:086729 AY269875 Bacillus sp. 12 prokMSA_id:084884 AY275493 Bacillus sp. MSB2047 prokMSA_id:086054 AY275494 Bacillus sp. MSB2029 prokMSA_id:083594 AY275495 Bacillus sp. MSB2054 prokMSA_id:087627 AY291473 Bacillus luciferensis isolate NP70 prokMSA_id:093450 AY357951 Bacillus sp. cEV5 prokMSA_id:096423 AY378188 Extreme arid zone HX-IE32 prokMSA_id:014963 D84614 Bacillus sp. str. S23402. prokMSA_id:014964 D84630 Bacillus sp. str. S23440. prokMSA_id:014975 L13146 str. B773. prokMSA_id:014973 U02893 Bacillus cereus str. FDA PCI 213 ATCC 11778. prokMSA_id:014974 U11551 Bacillus sp. prokMSA_id:014958 U31491 str. S12. prokMSA_id:014925 X55059 Bacillus anthracis str. Sterne. prokMSA_id:014927 X55060 Bacillus cereus NCDO 1771 . prokMSA_id:014972 X55061 Bacillus mycoides str. 273 DSM 2048 . prokMSA_id:014959 X55062 Bacillus thuringiensis NCIMB 9134 . prokMSA_id:014926 X55063 Bacillus cereus str. F4810/72 NCTC 11143. prokMSA_id:014960 X60628 Bacillus medusa NCIMB 10437. prokMSA_id:014962 X81132 Bacillus sp. str. Termite isolate 'bac. prokMSA_id:042217 Y15046 Bacillus cereus strain CH70-2 prokMSA_id:014966 Y15048 Bacillus cereus str. RC607. prokMSA_id:014967 Y15050 Bacillus cereus str. TA32-5. prokMSA_id:014968 Y15053 Bacillus cereus VKM 684. 2.30.7.13 B.SPHAERICUS_GROUP 309 seqs 2.30.7.13.1 B.SPHAERICUS_SUBGROUP 105 seqs 2.30.7.13.1.004 OTU 4 seqs prokMSA_id:048910 AF169508 Bacillus sp. BD-101 prokMSA_id:041559 AF169509 Bacillus sp. BD-103 prokMSA_id:048079 AF169520 Bacillus sp. BD-87 prokMSA_id:028870 AF169525 Bacillus sp. BD-99 2.30.7.13.1.005 OTU 7 seqs prokMSA_id:014982 L14010 Bacillus sphaericus str. 1013 T. Gibson ATCC 14577 . prokMSA_id:014978 L14011 Bacillus sphaericus str. 2362. prokMSA_id:014981 L14012 Bacillus sphaericus str. 2297. prokMSA_id:014976 L14013 Bacillus fusiformis ATCC 7055 . prokMSA_id:014977 L14014 Bacillus sphaericus NRS 592. prokMSA_id:014979 L14015 Bacillus sphaericus NRS 400. prokMSA_id:014980 L14016 Bacillus sphaericus NRS 1198. 2.30.7.13.1.008 OTU 1 seq prokMSA_id:071492 AJ508707 Bacillus cereus isolate MBRG 4.19 2.30.7.13.1.009 OTU 1 seq prokMSA_id:082493 AY242739 soil clone TcA34 2.30.7.13.1.011 OTU 65 seqs prokMSA_id:078227 AB098577 Bacillus sp. TUT1008 prokMSA_id:085427 AB106346 Bacillus sp. FRA000042 prokMSA_id:091442 AB116123 Bacillus sphaericus strain:S33 prokMSA_id:035652 AF169490 Bacillus sp. B-14865 prokMSA_id:031358 AF169491 Bacillus sp. B-14905 prokMSA_id:030216 AF169492 Bacillus sp. B-14957 prokMSA_id:021894 AF169493 Bacillus sp. B-183 prokMSA_id:023256 AF169494 Bacillus sp. B-1876 prokMSA_id:031069 AF169495 Bacillus sphaericus prokMSA_id:025415 AF169496 Bacillus sp. B-23269 prokMSA_id:020757 AF169497 Bacillus sp. B-23279 prokMSA_id:050391 AF169498 Bacillus sp. B-23280 prokMSA_id:034462 AF169500 Bacillus sp. B-23282 prokMSA_id:032927 AF169502 Bacillus sp. B-23284 prokMSA_id:047760 AF169503 Bacillus sp. B-23285 prokMSA_id:019710 AF169504 Bacillus sp. B-23286 prokMSA_id:047340 AF169505 Bacillus sp. B-23287 prokMSA_id:025196 AF169506 Bacillus sp. B-23288 prokMSA_id:020955 AF169507 Bacillus sp. B-4297 prokMSA_id:019504 AF169510 Bacillus sp. BD-107 prokMSA_id:039794 AF169511 Bacillus sp. BD-109 prokMSA_id:041414 AF169512 Bacillus sp. BD-111 prokMSA_id:036376 AF169513 Bacillus sp. BD-113 prokMSA_id:033671 AF169514 Bacillus sp. BD-115 prokMSA_id:038572 AF169515 Bacillus sp. BD-117 prokMSA_id:048387 AF169516 Bacillus sp. BD-119 prokMSA_id:029002 AF169517 Bacillus sp. BD-121 prokMSA_id:074854 AF169518 Bacillus sp. BD-83 prokMSA_id:023764 AF169521 Bacillus sp. BD-89 prokMSA_id:052279 AF169522 Bacillus sp. BD-93 prokMSA_id:042176 AF169523 Bacillus sp. BD-94 prokMSA_id:041978 AF169524 Bacillus sp. BD-95 prokMSA_id:018543 AF169526 Bacillus sp. NRS-111 prokMSA_id:019002 AF169527 Bacillus sp. NRS-1186 prokMSA_id:042030 AF169528 Bacillus sp. NRS-1198 prokMSA_id:039362 AF169529 Bacillus sp. NRS-1223 prokMSA_id:016731 AF169530 Bacillus sp. NRS-156 prokMSA_id:021252 AF169532 Bacillus sp. NRS-1692 prokMSA_id:019225 AF169536 Bacillus sp. NRS-250 prokMSA_id:049078 AF169537 Bacillus fusiformis prokMSA_id:019282 AF169538 Bacillus sp. NRS-400 prokMSA_id:036977 AF169539 Bacillus sp. NRS-593 prokMSA_id:043479 AF169540 Bacillus sp. NRS-718 prokMSA_id:022934 AF169541 Bacillus sp. NRS-719 prokMSA_id:031780 AF169542 Bacillus sp. NRS-732 prokMSA_id:039763 AF169543 Bacillus sp. NRS-752 prokMSA_id:023206 AF169544 Bacillus sp. NRS-800 prokMSA_id:026107 AF169545 Bacillus sp. NRS-810 prokMSA_id:042508 AF169546 Bacillus sp. NRS-866 prokMSA_id:033727 AF169547 Bacillus sp. NRS-967 prokMSA_id:070175 AF385530 Caryophanon sp. oral clone AV085 prokMSA_id:044025 AF427154 Bacillus sp. PAR5 prokMSA_id:034645 AF435435 Bacillus sphaericus strain 205y prokMSA_id:039772 AJ310083 Bacillus fusiformis strain DSM 2898T prokMSA_id:022582 AJ310084 Bacillus sphaericus strain DSM 28 prokMSA_id:070299 AJ311893 Bacillus sphaericus strain B3 prokMSA_id:072583 AJ311894 Bacillus sphaericus strain DSM 396 NTCC 9602 prokMSA_id:044036 AY043358 Bacillus sp. ZYM complete prokMSA_id:067860 AY082370 Bacillus sp. clone DGG30 prokMSA_id:087773 AY291474 Bacillus sphaericus isolate NP71 prokMSA_id:089991 AY304998 Bacillus sphaericus strain HPC249 3' prokMSA_id:091033 AY345539 clone LWSR-35 prokMSA_id:014984 D16280 Bacillus sphaericus str. IAM 13420. prokMSA_id:014988 L38654 Bacillus sphaericus str. BCA16. prokMSA_id:014985 M77486 Bacillus fusiformis. 2.30.7.13.1.999 poor quality 27 seqs prokMSA_id:085764 AB106348 Bacillus sp. FRA000044 prokMSA_id:036008 AF083568 Amazonian soil M33c prokMSA_id:014986 AF156308 str. NRRLB-14905. prokMSA_id:039415 AF169499 Bacillus sp. B-23281 prokMSA_id:044327 AF169501 Bacillus sp. B-23283 prokMSA_id:071751 AF227842 Bacillus sphaericus prokMSA_id:020933 AF395317 isopod gut clone RKPsI prokMSA_id:043106 AF395318 isopod gut clone RKPsS prokMSA_id:044564 AF395320 isopod gut clone RKPsZ prokMSA_id:016441 AF437542 clone PDSB039 prokMSA_id:022930 AJ296627 GR-371.III.83 clone GR-371.III.83 prokMSA_id:033160 AJ344524 Bacillus sp. strain MBT5 prokMSA_id:064699 AJ489379 Bacillus sp. Lgg20.8 strain Lgg20.8 prokMSA_id:075124 AJ517826 Bacillus sp. U60/B strain U60/B prokMSA_id:031184 AY039399 Earthworm burrow B3D5 prokMSA_id:061615 AY043577 Forest soil 2S2.H3 prokMSA_id:067032 AY095106 Marine SIMO IS-S74-233 prokMSA_id:066605 AY095350 Marine SIMO IS-S74-230 prokMSA_id:069486 AY095372 Marine SIMO IS-S74-233 prokMSA_id:090266 AY304997 Bacillus sphaericus strain HPC249 5' prokMSA_id:014989 L38655 Bacillus sp. prokMSA_id:014983 NONE Bacillus fusiformis ATCC 7055 . prokMSA_id:074702 U31473 low G+C gram-positive RS13 rrs prokMSA_id:037814 U31476 low G+C gram-positive RS19 rrs prokMSA_id:035211 U31480 low G+C gram-positive RS20 rrs prokMSA_id:014987 X60639 Bacillus sphaericus str. 1013 T. Gibson NCDO 1767 . prokMSA_id:018703 Y15045 Bacillus sphaericus strain FA8-2 2.30.7.13.2 CRP.LATUM_SUBGROUP 16 seqs 2.30.7.13.2.001 OTU 1 seq prokMSA_id:023724 AY037679 earthworm cast clone C022 2.30.7.13.2.002 OTU 1 seq prokMSA_id:062950 AF526913 Bacillus sp. 34hs1 rrn 2.30.7.13.2.003 OTU 3 seqs prokMSA_id:064190 AJ491303 Caryophanon tenue strain DSM 14152T prokMSA_id:014994 X70314 Caryophanon latum NCIMB 9533 . prokMSA_id:014993 X70315 Caryophanon tenue NCDO 2324 . 2.30.7.13.2.004 OTU 1 seq prokMSA_id:064192 AJ491302 Caryophanon latum strain DSM 14151T 2.30.7.13.2.005 OTU 4 seqs prokMSA_id:071479 AF385535 Caryophanon sp. oral clone AW086 prokMSA_id:066284 AF506060 Bacillus sp. LCSAOTU11 prokMSA_id:014990 AJ006086 Bacillus silvestris str. HR3-23. prokMSA_id:084818 AJ550464 Bacillus silvestris 2.30.7.13.2.006 OTU 1 seq prokMSA_id:014991 X70319 Caryophanon latum NCDO 2034. 2.30.7.13.2.007 OTU 1 seq prokMSA_id:014992 X70318 Caryophanon latum NCDO 1745. 2.30.7.13.2.008 OTU 1 seq prokMSA_id:073669 AF423297 soil clone 889-1 2.30.7.13.2.009 OTU 1 seq prokMSA_id:077308 AY167818 Bacillus silvestris strain SAFN-010 2.30.7.13.2.999 poor quality 2 seqs prokMSA_id:043060 AF423227 soil clone 1421-2 prokMSA_id:084555 AY092214 clone BM7 2.30.7.13.3 KUR.ZOPFII_SUBGROUP 17 seqs 2.30.7.13.3.001 OTU 6 seqs prokMSA_id:034737 AB074670 Low G+C Gram-positive D-N0-4D prokMSA_id:035115 AF169519 Bacillus sp. BD-85 prokMSA_id:039697 AF169531 Bacillus sp. NRS-1691 prokMSA_id:022505 AF169533 Bacillus sp. NRS-1693 prokMSA_id:016706 AF169534 Bacillus sp. NRS-1694 prokMSA_id:045761 AF169535 Bacillus sp. NRS-1695 2.30.7.13.3.002 OTU 2 seqs prokMSA_id:031835 AB077351 clone:TYM--14 prokMSA_id:054857 AB077354 clone:TYM--17 2.30.7.13.3.003 OTU 1 seq prokMSA_id:060381 AF513458 Bacillaceae LA38BB 2.30.7.13.3.004 OTU 1 seq prokMSA_id:014996 X70320 Kurthia gibsonii NCIMB 9758 . 2.30.7.13.3.005 OTU 1 seq prokMSA_id:014997 X70321 Kurthia zopfii str. F64/100; K5 NCIMB 9878 . 2.30.7.13.3.006 OTU 1 seq prokMSA_id:092244 AY359831 Bacillus sp. clone cEIII35 2.30.7.13.3.999 poor quality 5 seqs prokMSA_id:022667 AF423216 soil clone 125-1 prokMSA_id:059206 AJ344220 Bacillus sp. EJP 109 isolate EJP 109 prokMSA_id:093214 AY357975 Bacillus sp. cEV34 prokMSA_id:014998 M58800 Kurthia zopfii str. F64/100; K5 ATCC 33403 . prokMSA_id:014995 X70317 Filibacter limicola. 2.30.7.13.4 B.THERMOSPHAERICUS_SUBGROUP 27 seqs 2.30.7.13.4.001 OTU 15 seqs prokMSA_id:033741 AB034718 compost 5-11 prokMSA_id:079097 AB101594 Ureibacillus thermosphaericus prokMSA_id:071403 AF403015 Ureibacillus thermosphaericus strain D2 prokMSA_id:071700 AF403016 Ureibacillus thermosphaericus strain D2a prokMSA_id:035437 AF403017 Ureibacillus thermosphaericus strain T6 prokMSA_id:070221 AF403018 Ureibacillus thermosphaericus strain S6 prokMSA_id:030329 AF403019 Ureibacillus thermosphaericus strain S7 prokMSA_id:026580 AF403020 Ureibacillus thermosphaericus strain S10 prokMSA_id:032602 AF403021 Ureibacillus thermosphaericus strain S11 prokMSA_id:084745 AY248712 Ureibacillus thermosphaericus strain K3 prokMSA_id:082673 AY248713 Ureibacillus thermosphaericus strain K5 prokMSA_id:085855 AY248714 Ureibacillus thermosphaericus strain A3 prokMSA_id:091927 AY294314 Ureibacillus thermosphaericus isolate B from Chile prokMSA_id:094890 AY373318 Ureibacillus thermosphaericus strain R-7750 prokMSA_id:014999 X90640 Bacillus thermosphaericus str. P-11 DSM 10633 . 2.30.7.13.4.002 OTU 2 seqs prokMSA_id:015001 AJ002154 Bacillus TP-84 str. TP-84. prokMSA_id:052108 AJ276403 Bacillus sp. TH9A strain DSM 12654 2.30.7.13.4.003 OTU 2 seqs prokMSA_id:071123 AF403022 Bacillus sp. S13 prokMSA_id:055263 AF537293 Bacillus sp. B10EXG 2.30.7.13.4.004 OTU 1 seq prokMSA_id:015000 AF142855 clone BURTON-37. 2.30.7.13.4.005 OTU 1 seq prokMSA_id:091060 AY299517 Ureibacillus thermosphaericus from Ireland 2.30.7.13.4.006 OTU 1 seq prokMSA_id:091946 AY294316 Ureibacillus thermosphaericus isolate A from Poland 2.30.7.13.4.999 poor quality 5 seqs prokMSA_id:060470 AF515485 Ureibacillus thermosphaericus prokMSA_id:037348 AJ011356 clone C31 OTU B prokMSA_id:041971 AJ011357 clone D40 OTU C prokMSA_id:091657 AY294315 Ureibacillus thermosphaericus isolate A from Portugal prokMSA_id:092012 AY294317 Ureibacillus thermosphaericus isolate C from Poland 2.30.7.13.5 B.INSOLITUS_SUBGROUP 3 seqs 2.30.7.13.5.001 OTU 1 seq prokMSA_id:015002 L13147 str. B775. 2.30.7.13.5.999 poor quality 2 seqs prokMSA_id:048097 AJ132748 Bacillus sp. isolate DA627 prokMSA_id:015003 X60642 Bacillus insolitus DSM 5 . 2.30.7.13.6 B.PSYCHROPHILUS_SUBGROUP 64 seqs 2.30.7.13.6.001 OTU 1 seq prokMSA_id:017599 AF202057 Sporosarcina ureae 2.30.7.13.6.006 OTU 5 seqs prokMSA_id:057755 AF548874 Bacillus sp. CPB 2 prokMSA_id:057752 AF548876 Bacillus sp. CPB 1 prokMSA_id:057750 AF548877 Bacillus sp. CPB 7 prokMSA_id:055578 AF548880 Bacillus sp. CPB 9 prokMSA_id:057746 AF548884 Bacillus sp. CPB 3 2.30.7.13.6.014 OTU 2 seqs prokMSA_id:066290 AF506059 Sporosarcina sp. LCSAOTU9 prokMSA_id:079137 AJ539168 clone AF50 2.30.7.13.6.015 OTU 1 seq prokMSA_id:066515 AY100569 clone cvf62071 2.30.7.13.6.018 OTU 23 seqs prokMSA_id:015014 AF157111 Bacillus psychrophilus str. 82346. prokMSA_id:047004 AF202056 Bacillus aquamarinus prokMSA_id:048206 AF260711 Bacillus sp. S4 prokMSA_id:057749 AF548878 Bacillus sp. CPB 5 prokMSA_id:057747 AF548879 Bacillus sp. CPB 6 prokMSA_id:015009 AJ000980 DA114 prokMSA_id:015010 AJ000988 DA057 prokMSA_id:051589 AJ292316 Filibacter limicola strain DSM 13886T prokMSA_id:039603 AJ431329 Bacillus sp. ikaite c1 isolate ikaite c1 prokMSA_id:045316 AJ431330 Bacillus sp. ikaite c5 isolate ikaite c5 prokMSA_id:033293 AJ431331 Bacillus sp. ikaite c21 isolate ikaite21 prokMSA_id:089684 AJ544773 Sporosarcina sp. IDA0953 isolate IDA0953 prokMSA_id:089325 AJ544776 Sporosarcina sp. IDA3546 isolate IDA3546 prokMSA_id:090340 AJ544782 Sporosarcina sp. IDA3441 isolate IDA3441 prokMSA_id:079018 AY161043 Brevibacillus sp. PLC-3 prokMSA_id:077347 AY167816 Filibacter limicola strain SAFN-012 prokMSA_id:077326 AY167819 Sporosarcina aquimarina strain SAFN-008 prokMSA_id:086093 AY217505 low G+C Gram-positive prokMSA_id:015015 D16277 Bacillus psychrophilus str. W16A IAM 12468 . prokMSA_id:015011 X54967 Bacillus globisporus str. W25 ATCC 23301 . prokMSA_id:015012 X54968 Bacillus psychrophilus str. W16A ATCC 23304 . prokMSA_id:015013 X54969 Bacillus psychrophilus str. W5 ATCC 23306. prokMSA_id:015008 X68415 Bacillus globisporus str. W25 DSM 4 . 2.30.7.13.6.020 OTU 5 seqs prokMSA_id:078989 AB094469 Sporosarcina sp. 2216.15.2 prokMSA_id:025505 AF320336 Bacillus hs2_43 prokMSA_id:094088 AJ582201 firmicute clone Gitt-GS-134 prokMSA_id:095265 AY378266 Permafrost DT-IT19 prokMSA_id:098606 AY378272 Permafrost DT-ID02 2.30.7.13.6.021 OTU 1 seq prokMSA_id:094422 AY368607 clone nc-16 2.30.7.13.6.022 OTU 1 seq prokMSA_id:097534 AY382191 Bacillus sp. R-6930 2.30.7.13.6.999 poor quality 25 seqs prokMSA_id:050791 AF009996 prokMSA_id:043631 AF010009 prokMSA_id:018062 AF010085 prokMSA_id:040005 AF078438 Grassland soil clone sl3_807 prokMSA_id:035111 AF392710 clone CRD8 prokMSA_id:033235 AF446252 candidate division OP11 FL03H09 prokMSA_id:066277 AF506062 Bacillus sp. LCSAOTU15 prokMSA_id:057751 AF548875 Bacillus sp. CPB 8 prokMSA_id:057740 AF548881 Bacillus sp. CPB 10 prokMSA_id:057739 AF548882 Bacillus sp. CPB 11 prokMSA_id:055884 AF548883 Bacillus sp. CPB 12 prokMSA_id:055712 AF548885 Bacillus sp. CPB 4 prokMSA_id:044213 AJ247108 Riz79 prokMSA_id:027125 AJ247109 Riz711 prokMSA_id:093244 AJ581991 Bacillus aquamarinus strain 3Pe3-21 prokMSA_id:084846 AY214796 Bacilli clone BB-2-H10 prokMSA_id:085654 AY242550 Bacillus sp. clone G11316S prokMSA_id:095894 AY378222 Glacial ice ML-C11 prokMSA_id:098282 AY387584 Bacillus sp. 95 prokMSA_id:016542 U31475 low G+C gram-positive RS16 rrs prokMSA_id:015004 X60631 Bacillus pasteurii NCIMB 8841 . prokMSA_id:015016 X60634 Bacillus psychrophilus str. W16A ATCC 23304 . prokMSA_id:015007 X60644 Bacillus globisporus str. W25 NCIMB 11434 . prokMSA_id:015005 X62174 Sporosarcina ureae. prokMSA_id:015006 X62175 Sporosarcina ureae NCIMB 9251 . 2.30.7.13.7 PLC.MCMEEKINII_SUBGROUP 77 seqs 2.30.7.13.7.002 OTU 2 seqs prokMSA_id:017754 AJ297716 Bacillus sp. isolate P53-6 prokMSA_id:085408 AY266991 Bacillus sp. 433-D9 2.30.7.13.7.003 OTU 1 seq prokMSA_id:018100 AY030325 Bacillus sp. KL-024 2.30.7.13.7.004 OTU 1 seq prokMSA_id:069559 AF513386 Planomicrobium sp. 4-2 2.30.7.13.7.005 OTU 4 seqs prokMSA_id:015018 AB017538 Renibacterium salmoninarum. prokMSA_id:036118 AF308876 Arsenic resistant soil 7-04 prokMSA_id:023863 AJ277983 Bacillus psychrotolerans strain DSM 11706 prokMSA_id:022739 AJ277984 Bacillus psychrodurans strain DSM 11713 2.30.7.13.7.006 OTU 1 seq prokMSA_id:031248 AF234858 Planococcus citreus 2.30.7.13.7.007 OTU 1 seq prokMSA_id:035322 AB016269 Bacillus sp. strain NIBH P3M5 complete 2.30.7.13.7.008 OTU 6 seqs prokMSA_id:073281 AF237975 Planococcus citreus prokMSA_id:066683 AF500007 Planococcus maritimus strain TF-9 prokMSA_id:066682 AF500008 Planococcus citreus strain TF-16 prokMSA_id:091001 AJ493659 Planococcus rifitiensis strain M8 prokMSA_id:081178 AJ544622 Planococcus maitrii strain S1 prokMSA_id:015025 X62172 Planococcus citreus NCIMB 1493 . 2.30.7.13.7.010 OTU 1 seq prokMSA_id:047842 AJ011363 clone C1 OTU F 2.30.7.13.7.011 OTU 2 seqs prokMSA_id:048809 AF394173 Blackwater bioreactor BW21 prokMSA_id:091701 AY345488 K43 2.30.7.13.7.012 OTU 1 seq prokMSA_id:055403 AJ514408 Sporosarcina macmurdoensis strain CMS 21w 2.30.7.13.7.013 OTU 1 seq prokMSA_id:061616 AY043576 Forest soil 2S2.H1 2.30.7.13.7.014 OTU 1 seq prokMSA_id:066784 AF500321 Bacillus sp. PE12 2.30.7.13.7.018 OTU 1 seq prokMSA_id:015021 AF029364 Planococcus alkanoclasticus str. MAE2 NCIMB 13489. 2.30.7.13.7.020 OTU 19 seqs prokMSA_id:015019 AF041791 Planococcus mcmeekinii str. S23F2 ATCC 700539 . prokMSA_id:052488 AF144750 Planococcus sp. JG07 prokMSA_id:033254 AF242541 Planococcus sp. 'SOS Orange' prokMSA_id:074784 AF324659 Planococcus psychrotoleratus prokMSA_id:068743 AF479357 Glacial ice G50-TS4 prokMSA_id:073408 AF513385 Planococcus sp. 1-1 prokMSA_id:016646 AJ314744 Planococcus southpolaris strain CMS 3or prokMSA_id:029551 AJ314745 Planococcus southpolaris strain CMS 26or prokMSA_id:045093 AJ314746 Planococcus psychrophilus strain CMS 53or prokMSA_id:037775 AJ314747 Planococcus southpolaris strain CMS 84or prokMSA_id:082798 AJ440990 Antarctic R-8161 strain R-8161 prokMSA_id:063194 AJ496039 Planococcus sp. p16X prokMSA_id:077011 AJ519633 Clostridium sp. clone Sh765B-AG-2 prokMSA_id:070975 AY145537 Planococcaceae GP-13 prokMSA_id:073238 AY145538 Planococcaceae GP-14 prokMSA_id:087474 AY260168 Planococcus kazaiensis strain K01-30 prokMSA_id:091594 AY345473 K41 prokMSA_id:015017 D55729 Planococcus okeanokoites. prokMSA_id:015024 X62173 Planococcus kocurii NCIMB 629 . 2.30.7.13.7.021 OTU 1 seq prokMSA_id:084102 AY241425 Planococcus sp. UST020129-031 2.30.7.13.7.022 OTU 1 seq prokMSA_id:085106 AB092861 clone:ALU19 2.30.7.13.7.023 OTU 1 seq prokMSA_id:091369 AY345406 K2-69 2.30.7.13.7.024 OTU 1 seq prokMSA_id:094248 AJ582203 firmicute clone Gitt-GS-63 2.30.7.13.7.025 OTU 1 seq prokMSA_id:094449 AY368609 clone nc-18 2.30.7.13.7.026 OTU 1 seq prokMSA_id:098242 AY378236 Glacial ice MS-T1-04 2.30.7.13.7.999 poor quality 29 seqs prokMSA_id:093730 AB084263 Bacillus sp. KSM-9865 prokMSA_id:016676 AF234047 #0319-23G15 prokMSA_id:034540 AF234096 #0319-7G4 prokMSA_id:024786 AF240134 Grassland soil TSA-8 prokMSA_id:047036 AF323560 Planococcus sp. F1 prokMSA_id:034504 AF379028 clone EV14 prokMSA_id:039061 AF392712 clone LAB11 prokMSA_id:023773 AF392715 clone LBE2 prokMSA_id:041466 AF423233 soil clone 16-1 prokMSA_id:049185 AF432272 firmicute FO-0d-31 prokMSA_id:069051 AF530998 Low G+C Gram-positive zo05 prokMSA_id:048406 AJ232784 clone TRS2 prokMSA_id:080887 AJ437116 clone k1-01 prokMSA_id:083610 AJ495685 low G+C Gram-positive isolate SB-40 prokMSA_id:021695 AY028621 Planococcus sp. S5 prokMSA_id:061620 AY043573 Forest soil 4S2.C9 prokMSA_id:061617 AY043575 Forest soil 2H2.F8 prokMSA_id:061614 AY043578 Forest soil 3S2.A7 prokMSA_id:061606 AY043592 Forest soil 3S2.D12 prokMSA_id:059131 AY121827 clone ML-9 prokMSA_id:056039 AY145664 gamma CD21F09 prokMSA_id:070829 AY145668 low G+C Gram-positive CD21G03 prokMSA_id:069679 AY145670 low G+C Gram-positive CD21G06 prokMSA_id:079754 AY198114 Planococcaceae HLB prokMSA_id:096046 AY378208 Extreme arid zone HX-IIF08 prokMSA_id:098191 AY378278 Permafrost DT-IIF10 prokMSA_id:015023 U68647 clone P14. prokMSA_id:015022 U85898 Planococcus MB6-16 str. MB6-16. prokMSA_id:015020 U85899 Planococcus IC024 str. IC024. 2.30.7.14 B.THERMOCLOACAE 16 seqs 2.30.7.14.001 OTU 4 seqs prokMSA_id:045887 AF371534 clone p-79-a5 prokMSA_id:029728 AF371535 clone p-66-a5 prokMSA_id:027545 AF371536 clone p-2330-s962-2 prokMSA_id:017260 AJ308388 clone S37-11 2.30.7.14.002 OTU 1 seq prokMSA_id:027234 AB034710 compost 4-28 2.30.7.14.003 OTU 4 seqs prokMSA_id:067361 AB084065 Bacillus sp. MSP06G prokMSA_id:094375 AY368600 clone nc-11b prokMSA_id:094787 AY368611 clone nc-20 prokMSA_id:015026 Z26939 Bacillus thermocloacae DSM 5250 . 2.30.7.14.004 OTU 1 seq prokMSA_id:076144 AY147271 clone THM-1 2.30.7.14.005 OTU 1 seq prokMSA_id:095126 AY368613 clone nc-22 2.30.7.14.999 poor quality 5 seqs prokMSA_id:068647 AB081812 seuence clone:A-05 prokMSA_id:068643 AB081813 seuence clone:A-06 prokMSA_id:068638 AB081819 seuence clone:B-02 prokMSA_id:068636 AB081820 seuence clone:B-03 prokMSA_id:094294 AY368621 'c60-11b 60S3' 2.30.7.15 LISTERIA-BROCHOTHRIX_GROUP 52 seqs 2.30.7.15.1 LIS.MONOCYTOGENES_SUBGROUP 49 seqs 2.30.7.15.1.001 OTU 1 seq prokMSA_id:016370 Y12757 isolate MB405 2.30.7.15.1.002 OTU 26 seqs prokMSA_id:059522 AJ416944 Listeria seeligeri strain CECT 939 prokMSA_id:059524 AJ416945 Listeria seeligeri strain CECT 941 prokMSA_id:059488 AJ416946 Listeria seeligeri prokMSA_id:059523 AJ416947 Listeria seeligeri strain L15 prokMSA_id:059299 AJ508749 Listeria monocytogenes strain CECT 4032 prokMSA_id:070623 AJ515512 Listeria monocytogenes strain CECT 4031T prokMSA_id:069491 AJ515513 Listeria monocytogenes strain CECT 932 prokMSA_id:069445 AJ515515 Listeria monocytogenes strain CECT 935 prokMSA_id:071661 AJ515516 Listeria innocua strain CECT 910T prokMSA_id:069105 AJ515517 Listeria ivanovii strain CECT 913T prokMSA_id:074622 AJ515518 Listeria seeligeri strain CECT 917T prokMSA_id:069663 AJ515519 Listeria welshimeri strain CECT 919T prokMSA_id:053770 AL591981 Listeria monocytogenes strain EGD complete genome segment 9/12 prokMSA_id:049371 AL591983 Listeria monocytogenes strain EGD complete genome segment 11/12 prokMSA_id:054496 AL596170 Listeria innocua Clip11262 complete genome segment 8/12 prokMSA_id:046413 AL596172 Listeria innocua Clip11262 complete genome segment 10/12 prokMSA_id:050304 NC_003210 Listeria monocytogenes strain EGD complete genome prokMSA_id:053366 NC_003212 Listeria innocua Clip11262 complete genome prokMSA_id:015042 S55472 Listeria monocytogenes. prokMSA_id:015032 S55473 Listeria innocua. prokMSA_id:015039 X98527 Listeria innocua str. SLCC 3379 ATCC 33090 . prokMSA_id:015037 X98528 Listeria ivanovii subsp. ivanovii str. SLCC 2379 CLIP 12510 . prokMSA_id:015030 X98529 Listeria ivanovii subsp. londoniensis CLIP 12229 . prokMSA_id:015045 X98530 Listeria monocytogenes str. LL195. prokMSA_id:015040 X98531 Listeria seeligeri ATCC 35976. prokMSA_id:015046 X98532 Listeria welshimeri str. Welshimer V8 ATCC 35897 . 2.30.7.15.1.003 OTU 1 seq prokMSA_id:041555 AJ400262 clone S24-10 2.30.7.15.1.004 OTU 3 seqs prokMSA_id:072152 AJ515520 Listeria grayi strain CECT 931T prokMSA_id:069153 AJ515521 Listeria grayi strain CECT 942 prokMSA_id:015034 X98526 Listeria grayi ATCC 19120 . 2.30.7.15.1.999 poor quality 18 seqs prokMSA_id:049493 AF201854 Listeria innocua prokMSA_id:042439 AF201855 Listeria innocua prokMSA_id:019401 AH010030 Listeria innocua and genes prokMSA_id:047833 AJ131576 Listeria monocytogenes 5' end prokMSA_id:041519 AJ131577 Listeria monocytogenes 3' end prokMSA_id:095236 AY239417 clone rc1-17 complete prokMSA_id:015036 M58822 Listeria monocytogenes ATCC 35152. prokMSA_id:015029 U02898 Listeria monocytogenes str. 5867. prokMSA_id:037833 U84148 Listeria monocytogenes prokMSA_id:015043 U84149 Listeria monocytogenes str. DD 3823. prokMSA_id:015044 U84150 Listeria monocytogenes str. DD 6821. prokMSA_id:015035 X56148 Listeria seeligeri NCTC 11856 . prokMSA_id:015033 X56149 Listeria welshimeri str. Welshimer V8 NCTC 11857 . prokMSA_id:015041 X56150 Listeria grayi CIP 6818. prokMSA_id:015027 X56151 Listeria ivanovii subsp. ivanovii str. SLCC 2379 NCTC 11846 . prokMSA_id:015031 X56152 Listeria innocua str. SLCC 3379 NCTC 11288 . prokMSA_id:015028 X56153 Listeria monocytogenes str. 53 XXIII NCTC 10357 . prokMSA_id:015038 X56154 Listeria grayi str. F-9 NCTC 10812 . 2.30.7.15.2 BRO.THERMOSPHACTA_SUBGROUP 3 seqs 2.30.7.15.2.999 poor quality 3 seqs prokMSA_id:015048 M58798 Brochothrix thermosphacta ATCC 11509 . prokMSA_id:015049 X56155 Brochothrix thermosphacta NCDO 1676 . prokMSA_id:015047 X56156 Brochothrix campestris ATCC 43754 . 2.30.7.16 ABIOTROPHIA_GROUP 90 seqs 2.30.7.16.001 OTU 1 seq prokMSA_id:016600 AJ279038 Aerosphaera taetra strain CCUG 43036T 2.30.7.16.002 OTU 1 seq prokMSA_id:023513 AJ278341 Aerococcus urinaehominis strain CCUG 42038b 2.30.7.16.003 OTU 2 seqs prokMSA_id:028361 AF317375 feedlot manure B51 prokMSA_id:070625 AJ297627 Globicatella sulfidofaciens 2.30.7.16.004 OTU 3 seqs prokMSA_id:034746 AF202005 human oral A21 prokMSA_id:084770 AY207063 Abiotrophia sp. oral clone P4PA_155 P1 prokMSA_id:015063 D50541 Abiotrophia defectiva str. SC10 ATCC 49176 . 2.30.7.16.005 OTU 3 seqs prokMSA_id:015067 AF076639 Aerococcus LV65.5:W1 str. LV65.5:W1. prokMSA_id:034802 AF317386 feedlot manure B87 prokMSA_id:015068 D87677 Pediococcus urinaeequi IFO 12173. 2.30.7.16.006 OTU 2 seqs prokMSA_id:035088 AF318316 Aerococcus rochesterensis prokMSA_id:037545 AJ276512 Aerococcus sp. CCUG43001 2.30.7.16.007 OTU 1 seq prokMSA_id:055895 AJ410303 Alloiococcus sp. CCUG 45438 strain CCUG 45438 2.30.7.16.008 OTU 1 seq prokMSA_id:055329 AF467316 Bacillus sp. clone 1590 2.30.7.16.009 OTU 1 seq prokMSA_id:042227 AJ277381 Facklamia sp. CCUG 42728 2.30.7.16.010 OTU 5 seqs prokMSA_id:015058 AB022027 Abiotrophia adiacens str. TKT1. prokMSA_id:070105 AJ312375 Granulicatella adiacens strain 10/833 prokMSA_id:047930 AJ312376 Granulicatella adiacens strain LBV469 prokMSA_id:070746 AJ312377 Granulicatella adiacens strain WG160 prokMSA_id:015065 D50540 Abiotrophia adiacens str. GaD ATCC 49175 . 2.30.7.16.011 OTU 2 seqs prokMSA_id:048237 AF300974 B16S prokMSA_id:081112 AY080963 Pediococcus sp. clone ckl1 2.30.7.16.012 OTU 1 seq prokMSA_id:048276 AJ012666 Streptococcus sp. isolate 2992-95 2.30.7.16.013 OTU 3 seqs prokMSA_id:015051 Y15037 Facklamia 164-92 str. 164-92. prokMSA_id:015052 Y15038 Facklamia 1440-97 str. 1440-97. prokMSA_id:052354 Y15716 Facklamia ignava 2.30.7.16.014 OTU 1 seq prokMSA_id:015050 Y10772 Facklamia hominis. 2.30.7.16.015 OTU 1 seq prokMSA_id:015053 Y18053 Facklamia languida str. 1144-97. 2.30.7.16.016 OTU 4 seqs prokMSA_id:015057 AB022026 Abiotrophia elegans str. HHC5. prokMSA_id:015054 AF016390 Abiotrophia elegans str. B1333 DSM 11693 . prokMSA_id:015055 Y15408 Abiotrophia sp. str. 2640-91. prokMSA_id:015056 Y15413 Abiotrophia sp. str. 4067-96. 2.30.7.16.017 OTU 1 seq prokMSA_id:015059 Y16547 Abiotrophia balaenopterae CCUG 37380 . 2.30.7.16.018 OTU 1 seq prokMSA_id:015060 Y16426 Ignavigranum ruoffiae str. 1607-97 CCUG 37658 . 2.30.7.16.019 OTU 1 seq prokMSA_id:015061 Y17312 Facklamia sourekii. 2.30.7.16.020 OTU 1 seq prokMSA_id:015062 Y17820 Facklamia CCUG30090 CCUG 30090. 2.30.7.16.021 OTU 1 seq prokMSA_id:015070 U64456 Aerococcus urinae str. F1-84. 2.30.7.16.022 OTU 11 seqs prokMSA_id:098017 AY422711 Aerococcus urinae isolate NL 95031 prokMSA_id:096251 AY422712 Aerococcus urinae isolate CDC 151585 prokMSA_id:096543 AY422713 Aerococcus urinae isolate NL 95028 prokMSA_id:097674 AY422714 Aerococcus urinae isolate NL 95012 prokMSA_id:098780 AY422715 Aerococcus urinae isolate CDC 335295 prokMSA_id:095500 AY422716 Aerococcus urinae isolate CCUG 32514 prokMSA_id:096593 AY422717 Aerococcus urinae isolate DK E2T prokMSA_id:015071 U64457 Aerococcus urinae str. G1-84. prokMSA_id:015072 U64458 Aerococcus urinae str. 1656-92. prokMSA_id:015073 U64459 Aerococcus urinae str. 944-94. prokMSA_id:015074 U64460 Aerococcus urinae str. 998-93. 2.30.7.16.023 OTU 1 seq prokMSA_id:015076 Y17318 Aerococcus CCUG28826 CCUG 28826. 2.30.7.16.024 OTU 1 seq prokMSA_id:071345 AF317380 feedlot manure B7 2.30.7.16.025 OTU 1 seq prokMSA_id:073312 AF317354 feedlot manure A54 2.30.7.16.026 OTU 1 seq prokMSA_id:074511 Y17780 Facklamia sp. strain M1832/95/2 2.30.7.16.027 OTU 1 seq prokMSA_id:082321 AY080967 Aerococcus sp. clone ckl5 2.30.7.16.999 poor quality 37 seqs prokMSA_id:049104 AB028390 oral AP60-34 prokMSA_id:043635 AB028402 oral AP60-49 prokMSA_id:020183 AB028411 oral RP55-1 prokMSA_id:054764 AB028420 oral RP55-11 prokMSA_id:034191 AB028421 oral RP55-12 prokMSA_id:026395 AB028441 oral RP55-44 prokMSA_id:039197 AF181923 clone 7d/11 prokMSA_id:050603 AF195852 Abiotrophia defectiva strain SK948 prokMSA_id:072231 AF195853 Abiotrophia defectiva strain SK945 prokMSA_id:047974 AF195854 Abiotrophia defectiva strain SK943 prokMSA_id:035648 AF195855 Abiotrophia adiacens strain SK930 prokMSA_id:024919 AF195856 Abiotrophia elegans strain SK909 prokMSA_id:051603 AF195857 Abiotrophia adiacens strain SK906 prokMSA_id:031703 AF195858 Abiotrophia defectiva strain SK899 prokMSA_id:040497 AF195859 Abiotrophia adiacens strain SK897 prokMSA_id:050012 AF195860 Abiotrophia defectiva strain SK895 prokMSA_id:022498 AF195861 Abiotrophia elegans strain SK892 prokMSA_id:045939 AF195862 Abiotrophia defectiva strain SK894 prokMSA_id:052126 AF202006 human oral A22 prokMSA_id:039287 AF445246 Swine manure pit PPC6 prokMSA_id:044673 AF445247 Swine manure pit PPC98 prokMSA_id:055490 AF548625 Aerococcus viridans prokMSA_id:026672 AJ309980 Aerococcus viridans strain dtb226 prokMSA_id:063180 AJ496329 Abiotrophia defectiva prokMSA_id:047487 AY037882 firmicute clone CD1B3 prokMSA_id:081471 AY080965 Aerococcus sp. clone ckl3 prokMSA_id:081323 AY080974 Globicatella sp. clone ckl12 prokMSA_id:081768 AY080978 Facklamia sp. clone ckl16 prokMSA_id:083078 AY092339 clone BF33 prokMSA_id:066088 AY099227 clone MTU-2 prokMSA_id:078468 AY189642 clone EarCan115 prokMSA_id:089738 AY307991 clone UB426 prokMSA_id:090092 AY307992 clone UB611 prokMSA_id:015066 M58797 Aerococcus viridans ATCC 11563 . prokMSA_id:015069 M77819 Aerococcus urinae NCFB 2893 . prokMSA_id:015064 S50214 Globicatella sanguinis. prokMSA_id:015075 Y17005 Aerococcus christensenii CCUG 28831. 2.30.7.17 LACTOBACILLI 1125 seqs 2.30.7.17.1 WEI.VIRIDESCENS_SUBGROUP 95 seqs 2.30.7.17.1.001 OTU 21 seqs prokMSA_id:037266 AB023241 Weissella confusa strain JCM 1093 prokMSA_id:018129 AF252318 pPD5 prokMSA_id:022775 AF312874 Weissella kimchii prokMSA_id:019121 AF371480 clone p-2770-24E5 prokMSA_id:022822 AF371481 clone p-2734-24E5 prokMSA_id:023573 AF477495 Weissella confusa strain PL9001 complete prokMSA_id:046782 AF477497 Weissella confusa strain PL9004 complete prokMSA_id:036439 AF477498 Lactobacillus fermentum strain PL9005 complete prokMSA_id:066090 AF510730 Weissella confusa prokMSA_id:064384 AF515221 Weissella kimchii strain RO5 complete prokMSA_id:072769 AJ295989 Weissella cibaria strain LMG 17699T prokMSA_id:076923 AJ422031 Weissella cibaria strain ACA-DC 3411t2 prokMSA_id:075059 AY190626 Weissella cibaria prokMSA_id:075474 AY190628 Weissella kimchii strain TSK G6-1 prokMSA_id:076124 AY190629 Weissella kimchii strain TSK G18-3 prokMSA_id:084495 AY244625 Weissella kimchii strain BJ G29-9 prokMSA_id:092576 AY341547 Lactobacillus plantarum strain BJ19-2 prokMSA_id:092791 AY341568 Weissella confusa strain BJ22-1 prokMSA_id:092764 AY341569 Weissella confusa strain BJ21-2 prokMSA_id:092533 AY341570 Weissella cibaria strain BJ10-4 prokMSA_id:092650 AY341571 Weissella cibaria strain BJ29-2 2.30.7.17.1.002 OTU 10 seqs prokMSA_id:015084 AB015642 Weissella hellenica str. DS-12. prokMSA_id:045849 AB023238 Weissella paramesenteroides strain NRIC 1542 prokMSA_id:021108 AB023240 Weissella hellenica strain NRIC 0203 prokMSA_id:015085 AF086706 Weissella LMG17702 LMG 17702. prokMSA_id:015086 AF086707 Weissella LMG17707 LMG 17707. prokMSA_id:095668 AY186085 clone LR3B6 small subunit prokMSA_id:075718 AY190627 Weissella paramesenteroides strain TSK G15-2 prokMSA_id:075404 AY190630 Weissella paramesenteroides strain TSK G25-1 prokMSA_id:015083 S67831 Weissella hellenica NCFB 2973 . prokMSA_id:015090 X95981 Weissella hellenica NCFB 2973 . 2.30.7.17.1.003 OTU 3 seqs prokMSA_id:030631 AB022920 Weissella minor strain:NRIC 1625 prokMSA_id:033970 AB023236 Weissella viridescens strain NRIC 1536 prokMSA_id:015087 M23040 Weissella viridescens str. S38A ATCC 12706 . 2.30.7.17.1.004 OTU 1 seq prokMSA_id:043687 AB022922 Weissella kandleri strain:NRIC 1628 2.30.7.17.1.005 OTU 1 seq prokMSA_id:045087 AB022926 Weissella halotolerans strain:NRIC 1627 2.30.7.17.1.006 OTU 3 seqs prokMSA_id:063450 AY035891 Weissella koreensis isolate S-5623 prokMSA_id:063449 AY035892 Weissella koreensis isolate S-5673 prokMSA_id:048808 AY040669 Weissella hanii 2.30.7.17.1.007 OTU 1 seq prokMSA_id:073154 AY028260 Weissella soli complete 2.30.7.17.1.999 poor quality 55 seqs prokMSA_id:048654 AB023838 Weissella thailandensis strain:FS61-1T prokMSA_id:020724 AB023839 Weissella thailandensis strain:FS45-1 prokMSA_id:044090 AB029406 4-4:1 prokMSA_id:028997 AF108381 Weissella paramesenteroides prokMSA_id:045821 AF138781 Weissella sp. MRS-I09 small subunit prokMSA_id:035068 AF375903 Weissella cibaria strain RTT9 prokMSA_id:021509 AF375904 Weissella cibaria strain RTT8 prokMSA_id:020267 AF375924 Weissella confusa strain MLTT2 prokMSA_id:036518 AF375926 Weissella confusa strain YDB16 prokMSA_id:048929 AF375927 Weissella confusa strain YDB12 prokMSA_id:025522 AF437515 clone PDSB004 prokMSA_id:050644 AF437518 clone PDSB007 prokMSA_id:048330 AF437570 clone PDSB069 prokMSA_id:034474 AF437571 clone PDSB070 prokMSA_id:024685 AF437572 clone PDSB071 prokMSA_id:025607 AF437573 clone PDSB072 prokMSA_id:033925 AF437574 clone PDSB073 prokMSA_id:018046 AF437575 clone PDSB074 prokMSA_id:047832 AF437576 clone PDSB075 prokMSA_id:032397 AF437577 clone PDSB076 prokMSA_id:042331 AF437578 clone PDSB077 prokMSA_id:041527 AF437579 clone PDSB079 prokMSA_id:032358 AF437580 clone PDSB080 prokMSA_id:034815 AF437590 clone PDSB095 prokMSA_id:029790 AF437591 clone PDSB096 prokMSA_id:049419 AF437595 clone PDSB103 prokMSA_id:030303 AF437598 clone PDSB107 prokMSA_id:049990 AF437599 clone PDSB108 prokMSA_id:039838 AF437600 clone PDSB110 prokMSA_id:035450 AF437605 clone PDSB116 prokMSA_id:028344 AF437607 clone PDSB121 prokMSA_id:034205 AF437608 clone PDSB122 prokMSA_id:050767 AF437610 clone PDSB124 prokMSA_id:020854 AF437611 clone PDSB125 prokMSA_id:067464 AF493257 clone pHS3 prokMSA_id:036721 AJ405014 A22-K2 clone A22-K2 prokMSA_id:049467 AJ405020 A20-K3 clone A20-K3 prokMSA_id:028937 AJ405046 A21-K1 clone A21-K1 prokMSA_id:098210 AJ508722 Weissella confusa prokMSA_id:092067 AY341566 Weissella confusa strain BJ31-2 prokMSA_id:092068 AY341567 Weissella confusa strain BJ3-4 prokMSA_id:092663 AY341572 Weissella cibaria strain BJ31-3C prokMSA_id:015082 D31684 Weissella confusus JCM 1093 . prokMSA_id:015088 D31699 Weissella viridescens str. S38A JCM 1174 . prokMSA_id:015081 M23033 Weissella paramesenteroides DSM 20288 . prokMSA_id:015079 M23036 Weissella confusus ATCC 10881 . prokMSA_id:015077 M23037 Weissella halotolerans str. R61 ATCC 35410 . prokMSA_id:015093 M23038 Weissella kandleri DSM 20593 . prokMSA_id:015094 M23039 Weissella minor ATCC 35412 . prokMSA_id:033351 U81689 clone vadinBC50 prokMSA_id:015089 X52567 Weissella confusus NCDO 1586 . prokMSA_id:015078 X52568 Weissella viridescens str. S38A NCDO 1655 . prokMSA_id:015080 X52569 Weissella minor NCDO 1973. prokMSA_id:015091 X52570 Weissella kandleri NCDO 2753 . prokMSA_id:015092 X95982 Weissella paramesenteroides NCDO 803 . 2.30.7.17.2 LC.MESENTEROIDES_SUBGROUP 94 seqs 2.30.7.17.2.001 OTU 3 seqs prokMSA_id:052511 AB023239 Leuconostoc fallax strain NRIC 0210 prokMSA_id:016498 AF218797 Leuconostoc fallax prokMSA_id:067686 AF360738 Leuconostoc fallax 2.30.7.17.2.004 OTU 7 seqs prokMSA_id:020790 AB022924 Oenococcus oeni strain:JCM 6125 prokMSA_id:043771 AB054803 Oenococcus oeni strain:94 CS-3-4 prokMSA_id:032963 AB054804 Oenococcus oeni strain:95 MBA-6-A-1 prokMSA_id:020679 AB054805 Oenococcus oeni strain:95 St.CS-5-1 prokMSA_id:043827 AB054806 Oenococcus oeni strain:95 St.Mer-2-4 prokMSA_id:024042 AB054807 Oenococcus oeni strain:95 ASH-5-C-1 prokMSA_id:044642 AB054808 Oenococcus oeni strain:95 St.Mer-8-1 2.30.7.17.2.013 OTU 37 seqs prokMSA_id:015105 AB004661 Leuconostoc gelidum JCM 10093. prokMSA_id:024935 AB022921 Leuconostoc gelidum strain:NRIC 1778 prokMSA_id:044146 AB022923 Leuconostoc citreum strain:NRIC 1776 prokMSA_id:024282 AB022925 Leuconostoc carnosum strain:NRIC 1722 prokMSA_id:024435 AB023237 Leuconostoc pseudomesenteroides strain NRIC 1777 prokMSA_id:015103 AB023242 Leuconostoc mesenteroides subsp. mesenteroides NCFB 523. prokMSA_id:015104 AB023243 Leuconostoc mesenteroides subsp. mesenteroides NRIC 1541. prokMSA_id:050225 AB023244 Leuconostoc mesenteroides strain NCFB 529 prokMSA_id:033861 AB023245 Leuconostoc mesenteroides strain NRIC 1538 prokMSA_id:033805 AB023246 Leuconostoc mesenteroides strain NRIC 1539 prokMSA_id:045789 AB023247 Leuconostoc mesenteroides strain NCFB 543 prokMSA_id:015116 AB023968 Leuconostoc lactis JCM 6123. prokMSA_id:015110 AF111948 Leuconostoc citreum str. ; ATCC 49370. prokMSA_id:015111 AF111949 Leuconostoc citreum str. IH22 KCTC 0542BP. prokMSA_id:032872 AF173986 Leuconostoc kimchii prokMSA_id:015102 AF175402 Leuconostoc gelidum DSM 5578. prokMSA_id:015117 AF175403 Leuconostoc argentinum DSM 8581. prokMSA_id:015112 AF195784 Leuconostoc citreum str. 22R CNRZ 1478. prokMSA_id:024274 AF231131 Leuconostoc gasicomitatum strain LMG 18811 small subunit prokMSA_id:028880 AF231132 Leuconostoc gasicomitatum strain LMG 18812 small subunit prokMSA_id:072338 AF335895 Leuconostoc sp. clone LabF160 prokMSA_id:048590 AF335897 Leuconostoc sp. clone LabF165 prokMSA_id:031441 AF335915 Leuconostoc sp. clone LabS27 prokMSA_id:017970 AF335916 Leuconostoc sp. clone LabS38 prokMSA_id:067811 AF349928 clone G3-CR prokMSA_id:067809 AF349931 Leuconostoc sp. CR-310S clone crev-3 prokMSA_id:065411 AF439560 Leuconostoc inhae prokMSA_id:041680 AF468002 Leuconostoc pseudomesenteroides prokMSA_id:064385 AF515228 Leuconostoc pseudomesenteroides strain RO1 complete prokMSA_id:071574 AJ271850 Leuconostoc mesenteroides strain UK775 prokMSA_id:064686 AY117684 Leuconostoc inhae strain IH101 prokMSA_id:064685 AY117685 Leuconostoc inhae strain IH515 prokMSA_id:064684 AY117686 Leuconostoc inhae strain IH611 prokMSA_id:075964 AY165007 Leuconostoc citreum prokMSA_id:098624 AY186084 clone LB1C2 small subunit prokMSA_id:084812 AY264850 Leuconostoc mesenteroides strain KNUC03 prokMSA_id:015100 M23035 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 . 2.30.7.17.2.014 OTU 1 seq prokMSA_id:064604 AF467363 Bacillus sp. clone 1558 2.30.7.17.2.015 OTU 1 seq prokMSA_id:067685 AF360737 Leuconostoc fructosus 2.30.7.17.2.016 OTU 1 seq prokMSA_id:067688 AF360736 Leuconostoc ficulneus 2.30.7.17.2.999 poor quality 44 seqs prokMSA_id:015101 AB008901 Leuconostoc termite gut Cd4. prokMSA_id:096681 AB122035 Leuconostoc mesenteroides subsp. mesenteroides prokMSA_id:095416 AB122037 Leuconostoc citreum prokMSA_id:049058 AF138782 Leuconostoc sp. LEU-I02 small subunit prokMSA_id:035608 AF323676 Leuconostoc mesenteroides prokMSA_id:033107 AF375902 Leuconostoc mesenteroides subsp. mesenteroides strain RTT10 prokMSA_id:077457 AF477820 low G+C Gram-positive clone AGCM23 prokMSA_id:067175 AF498076 Leuconostoc mesenteroides isolate DGGE gel band MR4 prokMSA_id:067174 AF498077 Leuconostoc mesenteroides isolate DGGE gel band MRa4 prokMSA_id:067169 AF498078 Leuconostoc mesenteroides isolate DGGE gel band N4 prokMSA_id:067167 AF498079 Leuconostoc mesenteroides isolate DGGE gel band M4 prokMSA_id:067166 AF498080 Leuconostoc mesenteroides isolate DGGE gel band V4-5 prokMSA_id:051505 AJ297751 Oenococcus oeni strain HK 33 prokMSA_id:054096 AJ297752 Oenococcus oeni strain HK 34 prokMSA_id:023735 AJ297753 Oenococcus oeni strain HK 39 prokMSA_id:041810 AJ297754 Oenococcus oeni strain HK 41 prokMSA_id:024215 AJ297755 Oenococcus oeni strain HK 45 prokMSA_id:042391 AJ297756 Oenococcus oeni strain HK 46 prokMSA_id:031796 AJ297757 Oenococcus oeni strain HK 75 prokMSA_id:053016 AJ297758 Oenococcus oeni strain HK 76 prokMSA_id:035110 AJ297759 Oenococcus oeni strain HK 35 prokMSA_id:019808 AJ297760 Oenococcus oeni strain HK 36 prokMSA_id:039464 AJ297761 Oenococcus oeni strain HK 50 prokMSA_id:017443 AJ297762 Oenococcus oeni strain HK 54 prokMSA_id:050948 AJ297763 Oenococcus oeni strain HK 74 prokMSA_id:044466 AJ314706 clone slf172 prokMSA_id:026515 AJ314707 clone slf112 prokMSA_id:032809 AJ314708 clone sl516 prokMSA_id:045717 AJ314709 clone slf182 prokMSA_id:024709 AJ314710 clone s19 prokMSA_id:044640 AJ405013 A22-K1 clone A22-K1 prokMSA_id:035103 AY026048 Leuconostoc lactis prokMSA_id:015097 D31673 Oenococcus oeni NCDO 1674 . prokMSA_id:015115 M23031 Leuconostoc lactis ATCC 19256. prokMSA_id:015107 M23034 Leuconostoc mesenteroides subsp. cremoris ATCC 19254 . prokMSA_id:015096 M35820 Oenococcus oeni ATCC 23279 . prokMSA_id:015098 S63851 Leuconostoc fallax DSM 20189. prokMSA_id:015109 S78390 Leuconostoc citreum NCDO 2787. prokMSA_id:015113 X53963 Leuconostoc citreum NCFB 2787. prokMSA_id:015099 X61140 Lactobacillus fructosus NCDO 2345 . prokMSA_id:015114 X95977 Leuconostoc carnosum str. SML40 NCFB 2776 . prokMSA_id:015106 X95978 Leuconostoc mesenteroides subsp. mesenteroides NCDO 523 . prokMSA_id:015108 X95979 Leuconostoc pseudomesenteroides str. 39 NCDO 768 . prokMSA_id:015095 X95980 Oenococcus oeni NCDO 1674 . 2.30.7.17.3 L.DELBRUECKII_SUBGROUP 269 seqs 2.30.7.17.3.003 OTU 1 seq prokMSA_id:018716 AF371475 clone p-4729-2Wb2 2.30.7.17.3.005 OTU 5 seqs prokMSA_id:015130 AF157050 Lactobacillus ASF360 str. ASF 360. prokMSA_id:047413 AJ306299 Lactobacillus intestinalis strain DSM 6629T prokMSA_id:031066 AJ308390 clone L10-37 prokMSA_id:019606 AJ400273 clone S24-4 prokMSA_id:098005 AY239420 clone rc1-227 complete 2.30.7.17.3.007 OTU 1 seq prokMSA_id:021782 AJ306298 Lactobacillus hamsteri strain DSM 5661T 2.30.7.17.3.008 OTU 1 seq prokMSA_id:022491 AF371473 clone p-2716-65A5 2.30.7.17.3.012 OTU 21 seqs prokMSA_id:077517 AF215870 Lactobacillus sp. BLB1a prokMSA_id:077358 AF215872 Lactobacillus sp. KC38 prokMSA_id:077350 AF215880 Lactobacillus jensenii prokMSA_id:077355 AF215885 Lactobacillus sp. KC36b prokMSA_id:031979 AF243143 Lactobacillus jensenii strain BLB1a prokMSA_id:051715 AF243153 Lactobacillus jensenii strain KC13 prokMSA_id:047914 AF243155 Lactobacillus jensenii strain KC23 prokMSA_id:035518 AF243159 Lactobacillus jensenii strain KC36b prokMSA_id:047365 AF243160 Lactobacillus sp. KC38 prokMSA_id:027140 AF243161 Lactobacillus jensenii strain KC39 prokMSA_id:018763 AF243162 Lactobacillus jensenii strain KC44 prokMSA_id:038470 AF243176 Lactobacillus jensenii strain ATCC25258 prokMSA_id:031171 AJ272391 Lactobacillus psittaci prokMSA_id:076444 AY190622 Lactobacillus jensenii prokMSA_id:083189 AY262342 Lactobacillus jensenii strain H31 prokMSA_id:086042 AY262346 Lactobacillus jensenii strain H41-1 prokMSA_id:084914 AY262347 Lactobacillus jensenii strain H41-1-2a prokMSA_id:083893 AY262350 Lactobacillus jensenii strain H42-2a prokMSA_id:092869 AY339168 Lactobacillus jensenii strain BJ H41-2a prokMSA_id:092301 AY339169 Lactobacillus jensenii strain BJ H41-2b prokMSA_id:022336 Y18654 Lactobacillus sp. TV1018 2.30.7.17.3.014 OTU 34 seqs prokMSA_id:077489 AF215869 Lactobacillus sp. BLB1b prokMSA_id:077495 AF215874 Lactobacillus sp. KC36a prokMSA_id:077566 AF215877 Lactobacillus sp. BLB3 prokMSA_id:077411 AF215886 Lactobacillus sp. KC45a prokMSA_id:035597 AF243142 Lactobacillus gasseri strain BLB3 prokMSA_id:016314 AF243144 Lactobacillus gasseri strain BLB1b prokMSA_id:022892 AF243151 Lactobacillus gasseri strain KC36a prokMSA_id:050521 AF243156 Lactobacillus gasseri strain KC26 prokMSA_id:048509 AF243157 Lactobacillus gasseri strain KC29 prokMSA_id:043142 AF243163 Lactobacillus sp. KC45a prokMSA_id:016504 AF243165 Lactobacillus gasseri strain KC5a prokMSA_id:039384 AF243173 Lactobacillus gasseri strain TL33a prokMSA_id:023542 AF335914 Lactobacillus sp. clone LabS1 prokMSA_id:017132 AF371476 clone p-136-a2 prokMSA_id:070466 AF371477 clone p-13-a5 prokMSA_id:018662 AF371478 clone p-2315-962-2 prokMSA_id:028241 AF371479 clone p-2865-6C5 prokMSA_id:074642 AF519171 Lactobacillus gasseri strain ATCC 33323 complete prokMSA_id:015135 AJ002515 Lactobacillus johnsonii ATCC 33200 . prokMSA_id:042911 AJ400257 clone S24-1 prokMSA_id:066613 AY094066 Lactobacillus sp. IDSAc prokMSA_id:076485 AY157573 Lactobacillus sp. D1-2 prokMSA_id:075467 AY190611 Lactobacillus gasseri strain TSK V1-1 prokMSA_id:074959 AY190615 Lactobacillus gasseri strain TSK V18 prokMSA_id:076449 AY190617 Lactobacillus gasseri strain TSK V25-7 prokMSA_id:077179 AY190618 Lactobacillus gasseri strain TSK V10-4 prokMSA_id:077204 AY190619 Lactobacillus gasseri strain TSK V45-4 prokMSA_id:084312 AY262341 Lactobacillus gasseri prokMSA_id:092072 AY339164 Lactobacillus gasseri strain BJ V44-1 prokMSA_id:092602 AY339170 Lactobacillus gasseri strain BJ H28-3 prokMSA_id:092958 AY339171 Lactobacillus gasseri strain BJ H35 prokMSA_id:092406 AY339178 Lactobacillus gasseri strain BJ H25-8 prokMSA_id:092523 AY360337 Lactobacillus gasseri prokMSA_id:015132 M99704 Lactobacillus acidophilus subsp. johnsonii str. BMF 6Lb6 LAB 82. 2.30.7.17.3.015 OTU 1 seq prokMSA_id:043376 AJ241738 microorganism clone Col7 2.30.7.17.3.016 OTU 1 seq prokMSA_id:067812 AF349927 clone R3-CR 2.30.7.17.3.017 OTU 1 seq prokMSA_id:067815 AF349923 clone 45CR 2.30.7.17.3.019 OTU 13 seqs prokMSA_id:015119 AB007908 Lactobacillus delbrueckii subsp. bulgaricus str. Lb.14 JCM 1002 prokMSA_id:032532 AF335911 Lactobacillus sp. clone LabF93 prokMSA_id:067822 AF349919 clone 37CR complete prokMSA_id:067817 AF349921 clone 41CR prokMSA_id:055673 AF349925 clone 54CR complete prokMSA_id:019801 AF371474 clone p-2370-55G5 prokMSA_id:070539 AF390090 Lactobacillus sp. 19-2 prokMSA_id:070954 AY050171 Lactobacillus delbrueckii subsp. bulgaricus prokMSA_id:024230 AY050172 Lactobacillus delbrueckii subsp. delbrueckii prokMSA_id:073747 AY050173 Lactobacillus delbrueckii subsp. lactis prokMSA_id:077156 AY165006 Lactobacillus sp. CY1 prokMSA_id:095745 AY421720 Lactobacillus delbrueckii subsp. indicus strain NCC725 prokMSA_id:015124 M58823 Lactobacillus delbrueckii subsp. lactis ATCC 12315 . 2.30.7.17.3.020 OTU 1 seq prokMSA_id:067818 AF349922 clone 51CR complete 2.30.7.17.3.021 OTU 1 seq prokMSA_id:015125 Y17361 Lactobacillus amylolyticus str. LA 5 DSM 11664 . 2.30.7.17.3.022 OTU 1 seq prokMSA_id:015129 AJ242969 Lactobacillus crispatus NCTC 4. 2.30.7.17.3.023 OTU 13 seqs prokMSA_id:087305 AY283264 Lactobacillus iners clone FX35-5 prokMSA_id:087624 AY283265 Lactobacillus iners clone FX39-5 prokMSA_id:087235 AY283266 Lactobacillus iners clone FX41-5 prokMSA_id:087345 AY283267 Lactobacillus iners clone FX31-5 prokMSA_id:087395 AY283268 Lactobacillus iners clone FX12-5 prokMSA_id:087468 AY283269 Lactobacillus iners clone FX9-5 prokMSA_id:087024 AY283270 Lactobacillus iners clone FX43-4 prokMSA_id:087956 AY283271 Lactobacillus iners clone FX132-4 prokMSA_id:086789 AY283272 Lactobacillus iners clone FX177-4 prokMSA_id:087764 AY283273 Lactobacillus iners clone FX185-4 prokMSA_id:087266 AY283274 Lactobacillus iners clone FX181-4 prokMSA_id:086776 AY283275 Lactobacillus iners clone FX81-4 prokMSA_id:015133 Y16329 Lactobacillus sp. CCUG 28746. 2.30.7.17.3.024 OTU 1 seq prokMSA_id:074871 X98052 L.crispatus 2.30.7.17.3.025 OTU 1 seq prokMSA_id:084126 AY253657 Lactobacillus gastricus complete 2.30.7.17.3.026 OTU 1 seq prokMSA_id:085302 AY262349 Lactobacillus crispatus strain H42-2 2.30.7.17.3.028 OTU 77 seqs prokMSA_id:085653 AB107637 Lactobacillus sp. KM9212 prokMSA_id:084781 AB107638 Lactobacillus acidophilus prokMSA_id:077321 AF215868 Lactobacillus sp. KC35b prokMSA_id:077481 AF215876 Lactobacillus sp. BLB2 prokMSA_id:077287 AF215878 Lactobacillus sp. KLB46 prokMSA_id:041700 AF243141 Lactobacillus crispatus strain BLB2 prokMSA_id:049001 AF243150 Lactobacillus crispatus strain KC12b prokMSA_id:026975 AF243152 Lactobacillus crispatus strain KC12a prokMSA_id:045385 AF243158 Lactobacillus crispatus strain KC35b prokMSA_id:040531 AF243167 Lactobacillus crispatus strain KLB46 prokMSA_id:049002 AF243169 Lactobacillus crispatus strain KLB79 prokMSA_id:040830 AF243170 Lactobacillus crispatus strain TL13 prokMSA_id:033386 AF243171 Lactobacillus crispatus strain TL23a prokMSA_id:024380 AF243172 Lactobacillus crispatus strain TL25a prokMSA_id:042454 AF243174 Lactobacillus crispatus strain TL35 prokMSA_id:018690 AF243175 Lactobacillus crispatus strain TL39b prokMSA_id:021096 AF257096 Lactobacillus crispatus strain ATCC33197 prokMSA_id:016988 AF257097 Lactobacillus crispatus strain ATCC33820 prokMSA_id:029019 AF335893 Lactobacillus sp. clone LabF158 prokMSA_id:020190 AF335894 Lactobacillus sp. clone LabF159 prokMSA_id:049642 AF335896 Lactobacillus sp. clone LabF163 prokMSA_id:035458 AF335898 Lactobacillus sp. clone LabF168 prokMSA_id:036681 AF371468 clone p-2500-18B5 prokMSA_id:039660 AF371469 clone p-2488-18B5 prokMSA_id:040617 AF371470 clone p-1340-a2 prokMSA_id:045134 AF371471 clone p-2501-18B5 prokMSA_id:048213 AF371472 clone p-3443-SwA2 prokMSA_id:015128 AJ242968 Lactobacillus gallinarum ATCC 33199. prokMSA_id:061751 AJ417737 Lactobacillus gallinarum and internal transcribed spacer 1 ITS1 strain ATCC 33199 prokMSA_id:042878 AJ421221 Lactobacillus crispatus strain 173 prokMSA_id:028940 AJ421222 Lactobacillus crispatus strain 177 prokMSA_id:051077 AJ421224 Lactobacillus crispatus strain 179 prokMSA_id:025479 AJ421225 Lactobacillus crispatus strain 180 prokMSA_id:095575 AJ575259 Lactobacillus kefiranofaciens subsp. kefiranofaciens strain LMG 19149 prokMSA_id:096399 AJ575260 Lactobacillus kefiranofaciens subsp. kefiranofaciens strain R-14703 prokMSA_id:096446 AJ575261 Lactobacillus kefiranofaciens subsp. kefirgranum strain LMG 15132 prokMSA_id:096876 AJ575262 Lactobacillus kefiranofaciens subsp. kefirgranum strain R-12929 prokMSA_id:088892 AJ575742 Lactobacillus kefirgranum strain CECT 5919T prokMSA_id:098433 AX798832 2 from Patent WO03053158 prokMSA_id:098233 AX798834 4 from Patent WO03053158 prokMSA_id:047438 AY029223 Lactobacillus sp. Y10 prokMSA_id:082427 AY080968 Lactobacillus sp. clone ck6 prokMSA_id:080069 AY186042 Lactobacillus acidophilus strain RP1 prokMSA_id:076912 AY190612 Lactobacillus crispatus strain TSK V33-1 prokMSA_id:076695 AY190613 Lactobacillus crispatus strain TSK V36-4 prokMSA_id:075378 AY190616 Lactobacillus crispatus strain TSK V38-1 prokMSA_id:076246 AY190620 Lactobacillus crispatus strain TSK V4-1 prokMSA_id:076085 AY190621 Lactobacillus gasseri strain TSK V36-1 prokMSA_id:077223 AY190623 Lactobacillus crispatus strain TSK V36-3 prokMSA_id:076392 AY190624 Lactobacillus crispatus strain TSK V42-3 prokMSA_id:076462 AY190625 Lactobacillus crispatus strain TSK V40-4 prokMSA_id:084798 AY253660 Lactobacillus ultunense complete prokMSA_id:084183 AY262339 Lactobacillus crispatus strain H15-4 prokMSA_id:083814 AY262340 Lactobacillus crispatus strain H19 prokMSA_id:083187 AY262343 Lactobacillus jensenii strain H33-3 prokMSA_id:089132 AY330709 Lactobacillus sp. GV6 complete prokMSA_id:089344 AY335493 Lactobacillus crispatus clone FX13-3 prokMSA_id:089142 AY335494 Lactobacillus crispatus clone FX32-3 prokMSA_id:089807 AY335495 Lactobacillus crispatus clone FX36-3 prokMSA_id:088675 AY335496 Lactobacillus crispatus clone FX159-3 prokMSA_id:088944 AY335497 Lactobacillus crispatus clone FX137-3 prokMSA_id:088889 AY335498 Lactobacillus crispatus clone FX7-2 prokMSA_id:088720 AY335499 Lactobacillus crispatus clone FX11-2 prokMSA_id:088629 AY335500 Lactobacillus crispatus clone FX30-2 prokMSA_id:088865 AY335501 Lactobacillus crispatus clone FX147-2 prokMSA_id:090218 AY335502 Lactobacillus crispatus clone FX150-2 prokMSA_id:089253 AY335503 Lactobacillus crispatus clone FX157-2 prokMSA_id:089108 AY335504 Lactobacillus crispatus clone FX192-2 prokMSA_id:092290 AY339179 Lactobacillus gasseri strain BJ H36-3b prokMSA_id:092591 AY339180 Lactobacillus crispatus strain BJ H33h prokMSA_id:092362 AY339181 Lactobacillus crispatus strain BJ H42-4 prokMSA_id:092818 AY339182 Lactobacillus crispatus strain BJ Y20 prokMSA_id:092041 AY349383 Lactobacillus sp. oral clone HT070 prokMSA_id:095067 AY368593 clone nc-05 prokMSA_id:093437 AY369116 Lactobacillus helveticus strain NCIMB 11971 prokMSA_id:033702 X97898 L.gallinarum prokMSA_id:015127 Y17362 Lactobacillus crispatus DSM 20584 . 2.30.7.17.3.999 poor quality 94 seqs prokMSA_id:055803 AB075668 chicken cecal clone:1B1 prokMSA_id:065247 AB075690 Lactobacillus sp. clone:1A2 prokMSA_id:065245 AB075691 Lactobacillus sp. clone:1C1 prokMSA_id:094410 AB120825 clone:MC82D08 prokMSA_id:051635 AF095563 Lactobacillus delbrueckii clone Pz314 prokMSA_id:017187 AF133264 Lactobacillus amylovorus prokMSA_id:048562 AF133265 Lactobacillus crispatus prokMSA_id:020862 AF213703 Lactobacillus delbrueckii subsp. lactis prokMSA_id:029948 AF213704 Lactobacillus helveticus strain ATCC 15009; CRL 974 prokMSA_id:027590 AF213705 Lactobacillus helveticus strain CRL 1062 prokMSA_id:050095 AF261776 swine feces FOTU1 prokMSA_id:040097 AF296649 Lactobacillus delbrueckii small subunit prokMSA_id:044946 AF368383 Lactobacillus sp. clone LabF706 prokMSA_id:022156 AF375886 Lactobacillus acidophilus strain NCFM prokMSA_id:051033 AF375890 Lactobacillus gasseri strain MAB1 prokMSA_id:038710 AF375892 Lactobacillus jensenii strain JSW11 prokMSA_id:037208 AF375895 Lactobacillus acidophilus strain JVT5 prokMSA_id:051571 AF375916 Lactobacillus gasseri strain JHWW9 prokMSA_id:024857 AF375917 Lactobacillus delbrueckii subsp. bulgaricus strain JHWW5 prokMSA_id:036878 AF375919 Lactobacillus gasseri strain GYB1 prokMSA_id:037753 AF375921 Lactobacillus gasseri strain MLB10 prokMSA_id:019575 AF375930 Lactobacillus gasseri strain YDB21 prokMSA_id:035527 AF375936 Lactobacillus gasseri strain GGT3 prokMSA_id:038920 AF375937 Lactobacillus acidophilus strain GGT14 prokMSA_id:037371 AF376155 ckncm251-m8a2 prokMSA_id:073013 AF376247 ckncm014-DS18 prokMSA_id:019870 AF376362 ckncm129-F1M.2A5 prokMSA_id:025343 AF376384 ckncm151-F1M.1G5 prokMSA_id:029386 AF376433 ckncm200-F4M.1C12 prokMSA_id:024922 AF437531 clone PDSB023 prokMSA_id:034683 AF437535 clone PDSB031 prokMSA_id:036249 AF437536 clone PDSB032 prokMSA_id:025699 AF437538 clone PDSB035 prokMSA_id:051969 AF437583 clone PDSB085 prokMSA_id:044770 AF437584 clone PDSB086 prokMSA_id:032082 AF473545 Lactobacillus sp. NEQAS6172 prokMSA_id:046402 AJ010831 Lactobacillus delbrueckii ssp. lactis from I-CeuI fragment 1 strain CHCC450 prokMSA_id:045258 AJ010832 Lactobacillus delbrueckii ssp. lactis from I-CeuI fragment 3 strain CHCC450 prokMSA_id:027676 AJ010833 Lactobacillus delbrueckii from I-CeuI fragment 3a strain CHCC545 prokMSA_id:050293 AJ010834 Lactobacillus delbrueckii from I-CeuI fragment 3 strain CHCC545 prokMSA_id:052723 AJ010835 Lactobacillus delbrueckii from I-CeuI fragment 1 strain DSM20081 prokMSA_id:074741 AJ010983 Lactobacillus delbrueckii bulgaricus strain DSM20081 prokMSA_id:052303 AJ241720 Lactobacillus amylovorus clone Cal15 prokMSA_id:034304 AJ241726 microorganism clone Cal50 prokMSA_id:028518 AJ241727 microorganism clone Cal54 prokMSA_id:036965 AJ241728 microorganism clone Cal58 prokMSA_id:074626 AJ241737 Lactobacillus amylovorus clone Col5 prokMSA_id:054058 AJ241765 microorganism clone Cow2 prokMSA_id:049123 AJ241775 Lactobacillus acidophilus clone Cow32 prokMSA_id:016442 AJ308391 clone S25-1 prokMSA_id:074006 AJ400238 clone F15 prokMSA_id:067697 AJ414691 Lactobacillus delbrueckii subsp. lactis strain ps2 prokMSA_id:074002 AJ414692 Lactobacillus delbrueckii subsp. bulgaricus strain 13A prokMSA_id:070347 AJ414693 Lactobacillus delbrueckii subsp. bulgaricus strain ATCC 11842 prokMSA_id:073802 AJ414694 Lactobacillus delbrueckii subsp. bulgaricus strain lb4 prokMSA_id:070977 AJ414695 Lactobacillus delbrueckii subsp. lactis strain ATCC 12315 prokMSA_id:029540 AJ421223 Lactobacillus crispatus strain 178 prokMSA_id:096629 AJ555145 Lactobacillus crispatus prokMSA_id:038844 AY027791 Lactobacillus sp. clone DB1 prokMSA_id:038409 AY027792 Lactobacillus sp. clone DB3 prokMSA_id:049298 AY037878 firmicute clone CD1B4 prokMSA_id:059303 AY122353 Lactobacillus sp. clone I-22 prokMSA_id:080964 AY186044 Lactobacillus johnsonii strain RP3 prokMSA_id:081476 AY187459 clone SB101 prokMSA_id:083462 AY219231 Lactobacillus sp. prokMSA_id:084816 AY220472 Lactobacillus sp. clone CL3F prokMSA_id:098664 AY239415 clone rc2-16 complete prokMSA_id:097844 AY239416 clone rc3-35 complete prokMSA_id:096451 AY239419 clone rc1-38 complete prokMSA_id:084273 AY262344 Lactobacillus crispatus strain H36-2 prokMSA_id:085549 AY262345 Lactobacillus crispatus strain H36-3 prokMSA_id:086242 AY262348 Lactobacillus jensenii strain H41-1-2b prokMSA_id:088933 AY323499 Lactobacillus amylolyticus DAF 262 prokMSA_id:089003 AY323500 Lactobacillus amylolyticus DAF 285 prokMSA_id:089885 AY323501 Lactobacillus amylolyticus DAF 353 prokMSA_id:092022 AY339165 Lactobacillus gasseri strain BJ V28-1 prokMSA_id:092688 AY339166 Lactobacillus crispatus strain BJ V43-2a prokMSA_id:092368 AY339167 Lactobacillus gasseri strain BJ H28-3 prokMSA_id:093033 AY339172 Lactobacillus crispatus strain BJ H15-1 prokMSA_id:092385 AY339173 Lactobacillus gasseri strain BJ H44-3 prokMSA_id:092545 AY339175 Lactobacillus crispatus strain BJ H44-5 prokMSA_id:092796 AY341531 Lactobacillus gasseri strain BJ28-3 prokMSA_id:093008 AY341539 Lactobacillus gasseri strain BJ21-1 prokMSA_id:092340 AY344130 clone FX114-1 prokMSA_id:015126 M58801 Lactobacillus acetotolerans DSM 20749 . prokMSA_id:015137 M58802 Lactobacillus acidophilus ATCC 4356 . prokMSA_id:015118 M58805 Lactobacillus amylovorus ATCC 33620 . prokMSA_id:015131 M58806 Lactobacillus amylophilus DSM 20533 . prokMSA_id:015120 M58814 Lactobacillus delbrueckii subsp. delbrueckii str. Calvert ATCC 9649 prokMSA_id:015136 M58820 Lactobacillus gasseri ATCC 33323 . prokMSA_id:015134 X52654 Lactobacillus delbrueckii subsp. delbrueckii str. Calvert NCDO 213 prokMSA_id:015121 X61137 Lactobacillus gasseri NCDO 2233 . prokMSA_id:015123 X61138 Lactobacillus acidophilus NCDO 1748 . prokMSA_id:015122 X61141 Lactobacillus helveticus str. Lh12 NCDO 2712 . 2.30.7.17.4 L.REUTERI_SUBGROUP 127 seqs 2.30.7.17.4.001 OTU 1 seq prokMSA_id:016292 AJ400259 clone S24-8 2.30.7.17.4.005 OTU 15 seqs prokMSA_id:041977 AB034098 rumen 3C3d-12 prokMSA_id:015146 AF126738 Lactobacillus mucosae str. S32. prokMSA_id:015141 AF197126 Lactobacillus G24 str. G24. prokMSA_id:077529 AF215871 Lactobacillus sp. BLB1c prokMSA_id:018857 AF243145 Lactobacillus mucosae strain BLB1c prokMSA_id:047403 AF243148 Lactobacillus mucosae strain F52 prokMSA_id:048564 AF371488 clone p-1883-s962-3 prokMSA_id:076115 AY190614 Lactobacillus mucosae prokMSA_id:083215 AY244632 Lactobacillus mucosae strain BJ G18-2a prokMSA_id:084251 AY244639 Lactobacillus mucosae strain BJ G11-7 prokMSA_id:092500 AY339174 Lactobacillus mucosae prokMSA_id:092153 AY341542 Lactobacillus mucosae strain BJ14-2 prokMSA_id:092116 AY341545 Lactobacillus mucosae strain BJ12-1 prokMSA_id:092439 AY341548 Lactobacillus mucosae strain BJ16-2 prokMSA_id:092511 AY341550 Lactobacillus mucosae strain BJ18-2 2.30.7.17.4.008 OTU 2 seqs prokMSA_id:049917 AF371486 clone p-4312-4Wa3 prokMSA_id:023477 AJ292530 Lactobacillus colehominis 2.30.7.17.4.009 OTU 2 seqs prokMSA_id:029326 AH010481 Lactobacillus sp. CLE-4 prokMSA_id:024518 AY017059 Lactobacillus sp. CLE-4 3'- 2.30.7.17.4.014 OTU 6 seqs prokMSA_id:072717 AF308146 Lactobacillus sp. G12 complete prokMSA_id:052562 AF308147 Lactobacillus sp. G22 complete prokMSA_id:044614 AF317702 Lactobacillus sp. G35 prokMSA_id:040447 AF317703 Lactobacillus sp. G43 prokMSA_id:040831 AF317704 Lactobacillus sp. G44 prokMSA_id:052162 AF333975 Lactobacillus sp. KR3 complete 2.30.7.17.4.015 OTU 1 seq prokMSA_id:040960 AF296648 Lactobacillus fermentum small subunit 2.30.7.17.4.017 OTU 12 seqs prokMSA_id:021805 AF243149 Lactobacillus fermentum strain F53 prokMSA_id:041377 AF243166 Lactobacillus fermentum strain KC5b prokMSA_id:052471 AF302116 Lactobacillus fermentum complete prokMSA_id:044850 AF335907 Lactobacillus sp. clone LabF81 prokMSA_id:067816 AF349926 clone 60CR complete prokMSA_id:044080 AF477499 Lactobacillus fermentum strain PL9006 complete prokMSA_id:071186 AF522394 Lactobacillus fermentum strain KLB12 complete prokMSA_id:096956 AJ508720 Lactobacillus fermentum prokMSA_id:088448 AJ575812 Lactobacillus cellobiosus specimen voucher CECT 562 prokMSA_id:082968 AY244629 Lactobacillus fermentum strain BJ G27-1 prokMSA_id:095034 AY373589 Lactobacillus fermentum MD-9 prokMSA_id:015140 U62624 Lactobacillus fermentum str. KRM. 2.30.7.17.4.018 OTU 26 seqs prokMSA_id:077506 AF215873 Lactobacillus sp. KC19 prokMSA_id:077478 AF215882 Lactobacillus vaginalis prokMSA_id:016684 AF243154 Lactobacillus vaginalis strain KC19 prokMSA_id:021772 AF243177 Lactobacillus vaginalis strain ATCC49540 prokMSA_id:018575 AF335913 Lactobacillus sp. clone LabS14 prokMSA_id:017154 AF335918 Lactobacillus sp. clone LabS6 prokMSA_id:036454 AF371482 clone p-165-a2 prokMSA_id:035920 AF371483 clone p-2694-65A5 prokMSA_id:049202 AF371484 clone p-3301-23G2 prokMSA_id:022238 AF371485 clone p-3979-6Wa2 prokMSA_id:049835 AF371487 clone p-3083-SwA-3 prokMSA_id:038509 AJ241723 Lactobacillus reuteri clone Cal19 prokMSA_id:035658 AJ250074 Lactobacillus sp. TMW 1.666 strain TMW 1.666 prokMSA_id:028515 AJ308392 clone S25-5 prokMSA_id:076876 AJ422032 Lactobacillus pontis strain LMG 14187 T prokMSA_id:077216 AJ422033 Lactobacillus pontis strain LMG 14188 prokMSA_id:040490 AY005048 Lactobacillus sp. oral clone CX036 prokMSA_id:036668 AY017056 Lactobacillus sp. CLE-4 5'- prokMSA_id:085511 AY253659 Lactobacillus kalixi complete prokMSA_id:088745 AY324629 Lactobacillus reuteri strain OJU5 prokMSA_id:092962 AY341549 Lactobacillus vaginalis strain BJ18-2B prokMSA_id:015143 L23507 Lactobacillus reuteri str. F275 DSM 20016 . prokMSA_id:015144 X76328 Lactobacillus reuteri str. F275 DSM 20016 . prokMSA_id:015142 X76329 Lactobacillus pontis str. LTH 2587. prokMSA_id:015150 X94229 Lactobacillus oris DSM 4864 . prokMSA_id:015148 X94230 Lactobacillus panis DSM 6035 . 2.30.7.17.4.019 OTU 1 seq prokMSA_id:067806 AF349935 Lactobacillus sp. CR-6AS clone crev-7 2.30.7.17.4.020 OTU 1 seq prokMSA_id:077565 AF215884 Lactobacillus sp. F52 2.30.7.17.4.021 OTU 1 seq prokMSA_id:082759 AY253658 Lactobacillus antrumi complete 2.30.7.17.4.022 OTU 1 seq prokMSA_id:090213 AJ564009 Lactobacillus sp. CS1 strain CS1 2.30.7.17.4.023 OTU 1 seq prokMSA_id:091530 AY332396 Lactobacillus sp. rennanqilyf4 2.30.7.17.4.024 OTU 1 seq prokMSA_id:092771 AY349382 Lactobacillus sp. oral clone HT002 2.30.7.17.4.999 poor quality 56 seqs prokMSA_id:074519 AB017345 Lactobacillus fermentum strain:ATCC14931 prokMSA_id:051007 AB017358 Lactobacillus reuteri for16S strain:JCM 1112 prokMSA_id:065268 AB075667 chicken cecal clone:1G5 prokMSA_id:065251 AB075687 Lactobacillus sp. clone:1C6 prokMSA_id:065250 AB075688 Lactobacillus sp. clone:2E9 prokMSA_id:086846 AB099795 clone: OLDB-C10 prokMSA_id:094984 AB120824 clone:MC42D07 prokMSA_id:024836 AF138779 Lactobacillus fermentum strain MRS-I08 small subunit prokMSA_id:028038 AF138780 Lactobacillus fermentum strain MRS-II19 small subunit prokMSA_id:026212 AF261785 swine feces F11 prokMSA_id:021620 AF293905 rumen clone 3 prokMSA_id:020596 AF293944 rumen clone 42 prokMSA_id:022973 AF296647 Lactobacillus sp. 5D32 small subunit prokMSA_id:034373 AF375889 Lactobacillus oris strain MAB23 prokMSA_id:037408 AF375907 Lactobacillus vaginalis strain MATT4 prokMSA_id:045599 AF375908 Lactobacillus vaginalis strain MAW4 prokMSA_id:041910 AF375913 Lactobacillus fermentum strain JHB1 prokMSA_id:035869 AF375922 Lactobacillus vaginalis strain MLB6 prokMSA_id:038601 AF375923 Lactobacillus vaginalis strain MLB2 prokMSA_id:025862 AF375925 Lactobacillus vaginalis strain MLTT5 prokMSA_id:045488 AF375928 Lactobacillus vaginalis strain YDB3 prokMSA_id:017504 AF375929 Lactobacillus fermentum strain YDB11 prokMSA_id:038236 AF375932 Lactobacillus fermentum strain YDT11 prokMSA_id:028267 AF375933 Lactobacillus vaginalis strain YDT14 prokMSA_id:041588 AF376358 ckncm125-C31.C3 prokMSA_id:050659 AF382391 Lactobacillus fermentum prokMSA_id:052526 AF437581 clone PDSB081 prokMSA_id:051843 AF437597 clone PDSB106 prokMSA_id:064603 AF467367 alpha clone 2361 prokMSA_id:020944 AJ241746 Lactobacillus reuteri clone Col95 prokMSA_id:034158 AJ241753 Lactobacillus reuteri clone *Cow2 prokMSA_id:030240 AJ241756 Lactobacillus reuteri clone *Cow4 prokMSA_id:035640 AJ241759 Lactobacillus reuteri clone *Cow10 prokMSA_id:015145 AJ241763 Lactobacillus reuteri. prokMSA_id:041647 AJ241770 Lactobacillus reuteri clone Cow25 prokMSA_id:049101 AJ241772 Lactobacillus reuteri clone Cow27 prokMSA_id:036114 AJ241785 Lactobacillus reuteri clone Cow47 prokMSA_id:047574 AJ241786 Lactobacillus reuteri clone Cow48 prokMSA_id:040478 AJ400274 clone S24-6 prokMSA_id:025909 AJ419020 clone kl051 prokMSA_id:096955 AJ508724 Lactobacillus mucosae prokMSA_id:085980 AY220473 Lactobacillus sp. clone CC1 prokMSA_id:090308 AY318825 Lactobacillus reuteri strain HL9 prokMSA_id:088410 AY323493 Lactobacillus panis DAF 1 prokMSA_id:089366 AY323494 Lactobacillus panis DAG 76 prokMSA_id:089168 AY323495 Lactobacillus panis DAF 355 prokMSA_id:090088 AY323496 Lactobacillus pontis DAF 3 prokMSA_id:089049 AY323497 Lactobacillus pontis DAF 18 prokMSA_id:090046 AY323498 Lactobacillus pontis DAG 139 prokMSA_id:090652 AY324628 Lactobacillus reuteri strain ONK5 prokMSA_id:092088 AY339177 Lactobacillus sp. BJ H8-4 prokMSA_id:093137 AY341538 Lactobacillus mucosae strain BJ11-3 prokMSA_id:015139 M58819 Lactobacillus fermentum ATCC 14931 . prokMSA_id:015149 X61131 Lactobacillus oris NCDO 2160 . prokMSA_id:015147 X61136 Lactobacillus vaginalis NCTC 12197 . prokMSA_id:015138 X61142 Lactobacillus fermentum NCDO 1750 . 2.30.7.17.5 PED.PENTOSACEUS_SUBGROUP 73 seqs 2.30.7.17.5.001 OTU 1 seq prokMSA_id:017309 AF371490 clone p-2984-9F2 2.30.7.17.5.002 OTU 4 seqs prokMSA_id:051901 AF371489 clone p-2997-9F2 prokMSA_id:019307 AJ271383 Pediococcus inopinatus strain DSM 20285 prokMSA_id:039325 AJ318414 Pediococcus damnosus strain DSM 20331 prokMSA_id:015153 D88528 Pediococcus parvulus str. S182 JCM 5889 . 2.30.7.17.5.003 OTU 1 seq prokMSA_id:027815 AB018212 Pediococcus acidilactici strain E 7 2.30.7.17.5.004 OTU 12 seqs prokMSA_id:015156 AB018213 Pediococcus acidilactici str. LA 3. prokMSA_id:015157 AB018214 Pediococcus acidilactici str. LA 35. prokMSA_id:015152 AB018215 Pediococcus pentosaceus str. LS 5. prokMSA_id:067805 AF349938 Pediococcus sp. CR-6S clone crev-10 prokMSA_id:056137 AF515227 Pediococcus pentosaceus strain RO95 complete prokMSA_id:056475 AF515229 Pediococcus acidilactici strain RO17 complete prokMSA_id:044357 AJ305320 Pediococcus acidilactici strain DSM 20284 prokMSA_id:038120 AJ305321 Pediococcus pentosaceus strain DSM 20336 prokMSA_id:040870 AJ305322 Pediococcus acidilactici strain B1104 prokMSA_id:066562 AJ487025 amplicon L1 prokMSA_id:066561 AJ487026 amplicon L2 prokMSA_id:015151 M58834 Pediococcus pentosaceus ATCC 33316 . 2.30.7.17.5.005 OTU 1 seq prokMSA_id:072824 AY129779 Paralactobacillus sp. clone GCPF2 2.30.7.17.5.999 poor quality 54 seqs prokMSA_id:019161 AB029407 4-9:1 prokMSA_id:062095 AB064874 Pediococcus sp. clone:NS1A12 prokMSA_id:068629 AB081827 seuence clone:D-01 prokMSA_id:021345 AF296654 Lactobacillus sp. 6D3 small subunit prokMSA_id:025538 AF375914 Pediococcus acidilactici strain JHWW12 prokMSA_id:033676 AF375915 Pediococcus acidilactici strain JHWW13 prokMSA_id:043088 AF375935 Pediococcus acidilactici strain YDW17 prokMSA_id:062379 AF404711 Pediococcus acidilactici clone P01 prokMSA_id:062376 AF404712 Pediococcus acidilactici clone P02 prokMSA_id:074801 AF404713 Pediococcus claussenii clone P03 prokMSA_id:062375 AF404714 Pediococcus damnosus clone P04 prokMSA_id:055833 AF404715 Pediococcus damnosus clone P05 prokMSA_id:062373 AF404716 Pediococcus claussenii clone P06 prokMSA_id:056695 AF404717 Pediococcus acidilactici clone P07 prokMSA_id:062374 AF404718 Pediococcus damnosus clone P08 prokMSA_id:062370 AF404719 Pediococcus acidilactici clone P09 prokMSA_id:056443 AF404720 Pediococcus acidilactici clone P10 prokMSA_id:062371 AF404721 Pediococcus damnosus clone P11 prokMSA_id:062372 AF404722 Pediococcus damnosus clone P13 prokMSA_id:062369 AF404723 Pediococcus damnosus clone P14 prokMSA_id:062368 AF404724 Pediococcus acidilactici clone P15 prokMSA_id:062367 AF404725 Pediococcus pentosaceus clone P16 prokMSA_id:062365 AF404727 Pediococcus claussenii clone P18 prokMSA_id:062364 AF404728 Pediococcus claussenii clone P19 prokMSA_id:062363 AF404729 Pediococcus claussenii clone P20 prokMSA_id:062361 AF404730 Pediococcus claussenii clone P21 prokMSA_id:062360 AF404731 Pediococcus claussenii clone P22 prokMSA_id:062362 AF404732 Pediococcus parvulus clone P23 prokMSA_id:062359 AF404733 Pediococcus pentosaceus clone P24 prokMSA_id:062357 AF404734 Pediococcus acidilactici clone P25 prokMSA_id:062358 AF404735 Pediococcus pentosaceus clone P27 prokMSA_id:062355 AF404736 Pediococcus acidilactici clone P28 prokMSA_id:056425 AF404737 Pediococcus parvulus clone P29 prokMSA_id:056691 AF404738 Pediococcus pentosaceus clone P31 prokMSA_id:062356 AF404739 Pediococcus pentosaceus clone P35 prokMSA_id:062349 AF404740 Pediococcus damnosus clone P36 prokMSA_id:062348 AF404741 Pediococcus inopinatus clone P37 prokMSA_id:062347 AF404742 Pediococcus acidilactici clone P38 prokMSA_id:053881 AF437547 clone PDSB044 prokMSA_id:061032 AF530365 clone cadhufec111c10 prokMSA_id:034053 AJ249535 Pediococcus acidilactici strain DSMZ 20284 prokMSA_id:031725 AJ249537 Pediococcus acidilactici strain ATCC 25740 prokMSA_id:019376 AJ249538 Pediococcus acidilactici strain LMG 17687 prokMSA_id:027159 AJ249539 Pediococcus acidilactici strain DSMZ 20238 prokMSA_id:050862 AJ249891 Pediococcus acidilactici isolate LMG 17680 prokMSA_id:050214 AJ249892 Pediococcus acidilactici strain Pdi11 prokMSA_id:074517 AJ249893 Pediococcus acidilactici strain PAC 1.0 prokMSA_id:036349 AJ249894 Pediococcus acidilactici strain Psp2 prokMSA_id:061742 AJ417735 Lactobacillus vaccinostercus strain DSM 20634 prokMSA_id:094670 AY375299 Pediococcus acidilactici strain R03 prokMSA_id:015154 D87678 Pediococcus damnosus str. Be.1 JCM 5886 . prokMSA_id:015155 M58833 Pediococcus acidilactici str. B213c DSM 20284 . prokMSA_id:017830 U81694 clone vadinBE58 prokMSA_id:015158 X95976 Pediococcus acidilactici NCDO 2767. 2.30.7.17.6 L.PLANTARUM_SUBGROUP 151 seqs 2.30.7.17.6.002 OTU 46 seqs prokMSA_id:046388 AB070610 Lactobacillus B5407 prokMSA_id:084089 AB104855 Lactobacillus plantarum complete prokMSA_id:088391 AB112083 Lactobacillus plantarum prokMSA_id:017624 AF320256 Lactobacillus plantarum prokMSA_id:067804 AF349936 Lactobacillus sp. CR-7AS clone crev-8 prokMSA_id:048381 AF371493 clone p-3000-9F2 prokMSA_id:064381 AF515222 Lactobacillus plantarum strain RO7 complete prokMSA_id:064527 AF516754 Lactobacillus sp. MR-1 prokMSA_id:064526 AF516755 Lactobacillus sp. MR-2 prokMSA_id:073879 AJ272031 Lactobacillus plantarum strain HSW36 prokMSA_id:031888 AJ306297 Lactobacillus paraplantarum strain DSM 10667T prokMSA_id:079835 AL935253 Lactobacillus plantarum strain WCFS1 complete genome; segment 2/11 prokMSA_id:080613 AL935255 Lactobacillus plantarum strain WCFS1 complete genome; segment 4/11 prokMSA_id:080507 AL935258 Lactobacillus plantarum strain WCFS1 complete genome; segment 7/11 prokMSA_id:080844 AL935260 Lactobacillus plantarum strain WCFS1 complete genome; segment 9/11 prokMSA_id:080366 AL935261 Lactobacillus plantarum strain WCFS1 complete genome; segment 10/11 prokMSA_id:083673 AY244626 Lactobacillus plantarum strain BJ G26-1 prokMSA_id:085070 AY244627 Lactobacillus plantarum strain BJ G32-1 prokMSA_id:085716 AY244630 Lactobacillus plantarum strain BJ G31-1 prokMSA_id:084302 AY244631 Lactobacillus plantarum strain BJ G29-1 prokMSA_id:084594 AY244633 Lactobacillus plantarum strain BJ G26-4 prokMSA_id:083806 AY244634 Lactobacillus plantarum strain BJ G9-3 prokMSA_id:084583 AY244637 Lactobacillus plantarum strain BJ G14-5 prokMSA_id:086228 AY244638 Lactobacillus pentosus strain BJ G9-1 prokMSA_id:088894 AY318800 Lactobacillus sp. AL2 prokMSA_id:089555 AY318807 Lactobacillus sp. CL5 prokMSA_id:090611 AY318810 Lactobacillus sp. CL9 prokMSA_id:088066 AY318814 Lactobacillus sp. DL6 prokMSA_id:090128 AY318819 Lactobacillus sp. FL2 prokMSA_id:090449 AY318822 Lactobacillus sp. GL2 prokMSA_id:092312 AY341544 Lactobacillus plantarum strain BJ20-1 prokMSA_id:093128 AY341546 Lactobacillus plantarum strain BJ26-2 prokMSA_id:092674 AY341551 Lactobacillus plantarum strain BJ16-28 prokMSA_id:092024 AY341554 Lactobacillus plantarum strain BJ12A-1B prokMSA_id:092364 AY341557 Lactobacillus plantarum strain BJ32-1 prokMSA_id:092227 AY341559 Lactobacillus plantarum strain BJ6-2 prokMSA_id:092163 AY341560 Lactobacillus plantarum strain BJ4-1 prokMSA_id:092546 AY341564 Lactobacillus plantarum strain BJ4-4 prokMSA_id:092078 AY359240 Lactobacillus plantarum prokMSA_id:095689 AY379071 Lactobacillus plantarum prokMSA_id:095489 AY383631 Lactobacillus plantarum strain MiLAB14 prokMSA_id:015161 D79210 Lactobacillus plantarum JCM 1149 . prokMSA_id:015159 D79211 Lactobacillus pentosus JCM 1588. prokMSA_id:015160 D79213 Lactobacillus sp. ATCC 10776. prokMSA_id:015163 M58827 Lactobacillus plantarum str. 17-5 ATCC 8014. prokMSA_id:080353 NC_004567 Lactobacillus plantarum WCFS1 complete genome 2.30.7.17.6.003 OTU 9 seqs prokMSA_id:018684 AB018528 Lactobacillus paraalimentarius prokMSA_id:024802 AF183558 Lactobacillus kimchii prokMSA_id:058041 AJ313530 Lactobacillus sp. TMW 1.80 strain TMW 1.80 prokMSA_id:070957 AJ417499 Lactobacillus farciminis strain DSM 20185 prokMSA_id:070330 AJ417500 Lactobacillus paralimentarius strain DSM 13238 prokMSA_id:076371 AJ422034 Lactobacillus paralimentarius strain ACA-DC 3363 prokMSA_id:076191 AJ422035 Lactobacillus paralimentarius strain ACA-DC 3413 prokMSA_id:076249 AJ422036 Lactobacillus paralimentarius strain ACA-DC 3415 prokMSA_id:092867 AY341562 Lactobacillus farciminis strain BJ1-2 2.30.7.17.6.004 OTU 1 seq prokMSA_id:024271 AF371491 clone p-2626-9F5 2.30.7.17.6.005 OTU 1 seq prokMSA_id:026722 AF371494 clone p-2960-9F2 2.30.7.17.6.006 OTU 1 seq prokMSA_id:027265 AF371495 clone p-2988-9F2 2.30.7.17.6.009 OTU 1 seq prokMSA_id:056512 AJ417738 Lactobacillus letivazi 23S and internal transcribed spacer 1 ITS1 strain JCL3994 2.30.7.17.6.010 OTU 2 seqs prokMSA_id:015164 AB005893 Lactobacillus collinoides JCM 1123 . prokMSA_id:038883 E16651 Lactobacillus sp. AB No.74 2.30.7.17.6.011 OTU 1 seq prokMSA_id:038908 AF371492 clone p-2945-9F2 2.30.7.17.6.012 OTU 1 seq prokMSA_id:052430 AF371501 clone p-2956-9F2 2.30.7.17.6.013 OTU 1 seq prokMSA_id:062877 AJ496791 Lactobacillus versmoldensis strain KU-3T 2.30.7.17.6.014 OTU 1 seq prokMSA_id:074107 AJ315640 Lactobacillus durianis strain LMG 19193 2.30.7.17.6.016 OTU 20 seqs prokMSA_id:015171 AB024299 Lactobacillus brevis NRIC 1684. prokMSA_id:016554 AB070606 Lactobacillus brevis strain:B4101 prokMSA_id:048588 AB070607 Lactobacillus brevis strain:B5201 prokMSA_id:040052 AB070608 Lactobacillus brevis strain:B5401 prokMSA_id:017965 AB070611 Lactobacillus brevis strain:B5501 prokMSA_id:015172 AF090328 Lactobacillus brevis str. K9. prokMSA_id:029013 AF371496 clone p-2963-9F2 prokMSA_id:064389 AF515219 Lactobacillus brevis strain RO97 complete prokMSA_id:064387 AF515220 Lactobacillus brevis strain RO66 complete prokMSA_id:075967 AJ422039 Lactobacillus brevis strain ACA-DC 3411t1 prokMSA_id:075710 AJ422040 Lactobacillus brevis strain ACA-DC 3416 prokMSA_id:075827 AJ422041 Lactobacillus brevis strain ACA-DC 3406 prokMSA_id:076274 AJ422042 Lactobacillus brevis strain ACA-DC 4003 prokMSA_id:075211 AJ422043 Lactobacillus brevis strain ACA-DC 3368 prokMSA_id:077181 AJ422044 Lactobacillus brevis strain ACA-DC 3401 prokMSA_id:084579 AY244636 Lactobacillus brevis strain BJ G23-1 prokMSA_id:089579 AY318799 Lactobacillus brevis strain AL1 prokMSA_id:092026 AY341540 Lactobacillus brevis strain BJ1-3 prokMSA_id:015173 D37785 Lactobacillus brevis str. Lactobacillus brevis L63. prokMSA_id:015170 M58810 Lactobacillus brevis ATCC 14869 . 2.30.7.17.6.017 OTU 1 seq prokMSA_id:089147 AJ576006 Lactobacillus sp. CECT 5920 strain CECT 5920 2.30.7.17.6.018 OTU 1 seq prokMSA_id:089199 AJ575743 Lactobacillus malefermentans strain CECT 5928T 2.30.7.17.6.999 poor quality 64 seqs prokMSA_id:035304 AB025971 Lactobacillus brevis prokMSA_id:031364 AB025972 Lactobacillus plantarum prokMSA_id:035125 AB030925 Lactobacillus plantarum strain:INL1 prokMSA_id:018341 AB030926 Lactobacillus plantarum strain:INY1 prokMSA_id:082749 AB106341 Lactobacillus brevis prokMSA_id:015162 AF093757 Lactobacillus arizonae str. B-14768. prokMSA_id:018540 AF095562 Lactobacillus alimentarius clone Pz634 prokMSA_id:033677 AF095564 Lactobacillus plantarum clone Pz619 prokMSA_id:026820 AF108384 Lactobacillus plantarum prokMSA_id:026663 AF138777 Lactobacillus sp. MRS-III06 small subunit prokMSA_id:044625 AF138778 Lactobacillus sp. MRS-II22 small subunit prokMSA_id:053632 AF181900 clone 0d/2 prokMSA_id:040313 AF181901 clone 0d/5 prokMSA_id:021251 AF181902 clone 0d/8 prokMSA_id:041633 AF296646 Lactobacillus sp. 3F11 small subunit prokMSA_id:019229 AF323677 Lactobacillus plantarum prokMSA_id:040348 AF353271 compost clone SSCP3d0 prokMSA_id:038979 AF353279 compost clone SSCP2d0-5 prokMSA_id:020852 AF375905 Lactobacillus pentosus strain RW14 prokMSA_id:039544 AF376374 ckncm141-F1M.2D7 prokMSA_id:020723 AF382389 Lactobacillus plantarum strain C5 prokMSA_id:026342 AF382390 Lactobacillus plantarum strain 0B8 prokMSA_id:062377 AF404709 Lactobacillus brevis clone L44 prokMSA_id:062378 AF404710 Lactobacillus plantarum clone L71 prokMSA_id:067172 AF498074 Lactobacillus plantarum isolate DGGE gel band V4-5 prokMSA_id:067171 AF498075 Lactobacillus plantarum isolate DGGE gel band R4 prokMSA_id:066679 AF502292 Lactobacillus versmoldensis prokMSA_id:073661 AJ271852 Lactobacillus plantarum strain UK782 prokMSA_id:061738 AJ417736 Lactobacillus malefermentans strain DSM 20570 prokMSA_id:034400 AY078431 Lactobacillus plantarum strain PL9010 prokMSA_id:053525 AY078432 Lactobacillus plantarum strain PL9011 prokMSA_id:036021 AY078433 Lactobacillus brevis strain PL9012 prokMSA_id:023638 AY078434 Lactobacillus brevis strain PL9013 prokMSA_id:020660 AY078435 Lactobacillus brevis strain PL9014 prokMSA_id:066017 AY082883 Lactobacillus plantarum isolate N4 prokMSA_id:055644 AY082884 Lactobacillus plantarum isolate N8 prokMSA_id:084345 AY230219 Lactobacillus plantarum strain H14 prokMSA_id:083239 AY230220 Lactobacillus plantarum strain H prokMSA_id:084560 AY230221 Lactobacillus plantarum strain H19 prokMSA_id:085334 AY230222 Lactobacillus plantarum strain H20 prokMSA_id:084617 AY230223 Lactobacillus plantarum strain H4 prokMSA_id:086180 AY230224 Lactobacillus plantarum strain H5 prokMSA_id:083774 AY230225 Lactobacillus plantarum strain H8 prokMSA_id:083106 AY230226 Lactobacillus plantarum strain K13 prokMSA_id:084280 AY230227 Lactobacillus plantarum strain K14 prokMSA_id:085521 AY230228 Lactobacillus plantarum strain K21 prokMSA_id:085241 AY230229 Lactobacillus plantarum strain K22 prokMSA_id:085733 AY230230 Lactobacillus plantarum strain Q3 prokMSA_id:084015 AY230232 Lactobacillus brevis strain H6 prokMSA_id:088875 AY318801 Lactobacillus brevis strain AL3 prokMSA_id:090025 AY318805 Lactobacillus brevis strain CL2 prokMSA_id:090500 AY318808 Lactobacillus sp. CL6 prokMSA_id:090138 AY318812 Lactobacillus brevis strain DL2 prokMSA_id:088434 AY318813 Lactobacillus sp. DL3 prokMSA_id:093068 AY341537 Lactobacillus plantarum strain BJ12-1B prokMSA_id:092442 AY341552 Lactobacillus plantarum strain BJ31-1S prokMSA_id:093162 AY341565 Lactobacillus brevis strain BJ1-1 prokMSA_id:015174 D31681 Lactobacillus brevis ATCC 14869 . prokMSA_id:015165 D31697 Lactobacillus reuteri str. F275 JCM 1112 . prokMSA_id:015167 M58804 Lactobacillus alimentarius ATCC 29643 . prokMSA_id:015168 M58817 Lactobacillus farciminis ATCC 29644 . prokMSA_id:044958 U81659 clone vadinBB27 prokMSA_id:015166 X52653 Lactobacillus plantarum str. Lp 39 NCDO 1752 . prokMSA_id:015169 X61134 Lactobacillus brevis NCDO 1749 . 2.30.7.17.7 L.SANFRANCISCENSIS_SUBGROUP 42 seqs 2.30.7.17.7.001 OTU 6 seqs prokMSA_id:015178 AB024300 Lactobacillus kefiri NRIC 1693. prokMSA_id:033139 AF275311 Lactobacillus ferintoshensis prokMSA_id:030670 AY026750 Lactobacillus parakefiri prokMSA_id:020664 AY026751 Lactobacillus parabuchneri prokMSA_id:087788 AY278620 Lactobacillus genomosp. C2 prokMSA_id:093917 AY363303 Lactobacillus kefiri 2.30.7.17.7.002 OTU 2 seqs prokMSA_id:074576 AF408266 Lactobacillus sp. clone KL-111-2-6 prokMSA_id:026176 AF408267 Lactobacillus sp. clone KL-11-1-6 2.30.7.17.7.003 OTU 2 seqs prokMSA_id:026241 AF264701 Lactobacillus sp. JKD6 complete prokMSA_id:038705 AY026752 Lactobacillus sp. ACD7 2.30.7.17.7.004 OTU 1 seq prokMSA_id:044586 AF445731 clone SM2F09 2.30.7.17.7.005 OTU 4 seqs prokMSA_id:076839 AJ422037 Lactobacillus sanfranciscensis strain C57 prokMSA_id:077087 AJ422038 Lactobacillus sanfranciscensis strain ACA-DC 3408 prokMSA_id:015189 X76327 Lactobacillus sanfranciscensis str. Kline L-2 ATCC 27651 . prokMSA_id:015176 X76331 Lactobacillus sanfranciscensis DSM 20663. 2.30.7.17.7.006 OTU 1 seq prokMSA_id:015179 Y11374 Lactobacillus sp. str. YH-15. 2.30.7.17.7.007 OTU 1 seq prokMSA_id:015190 X76330 Lactobacillus fructivorans DSM 20203 . 2.30.7.17.7.008 OTU 4 seqs prokMSA_id:015194 D37784 Lactobacillus lindneri str. DA1. prokMSA_id:015191 X95421 Lactobacillus lindneri str. KPA DSM 20690 . prokMSA_id:015192 X95422 Lactobacillus lindneri str. L2. prokMSA_id:015193 X95423 Lactobacillus lindneri str. LTH 2505. 2.30.7.17.7.009 OTU 1 seq prokMSA_id:085541 AY241664 Lactobacillus hilgardii IOEB0204 2.30.7.17.7.010 OTU 1 seq prokMSA_id:087883 AY278619 Lactobacillus genomosp. C1 2.30.7.17.7.011 OTU 1 seq prokMSA_id:093190 AY363377 Lactobacillus sp. rennanqilfy19 2.30.7.17.7.999 poor quality 18 seqs prokMSA_id:023147 AF296652 Lactobacillus sp. 4B13 small subunit prokMSA_id:026430 AF375899 Lactobacillus parabuchneri strain RTT11 prokMSA_id:038980 AF375900 Lactobacillus parabuchneri strain RTT12 prokMSA_id:027699 AF375901 Lactobacillus vermiforme strain RTT15 prokMSA_id:022687 AF375910 Lactobacillus parabuchneri strain RRTT12 prokMSA_id:028270 AF375911 Lactobacillus parabuchneri strain RRTT13 prokMSA_id:027686 AF375934 Lactobacillus parabuchneri strain YDT7 prokMSA_id:015185 D31693 Lactobacillus hilgardii JCM 1155 . prokMSA_id:015183 D31694 Lactobacillus homohiochii JCM 1199 . prokMSA_id:015188 D31695 Lactobacillus kefiri JCM 5818 . prokMSA_id:015175 M58811 Lactobacillus buchneri ATCC 4005 . prokMSA_id:015186 M58818 Lactobacillus fructivorans ATCC 8288 . prokMSA_id:015180 M58821 Lactobacillus hilgardii ATCC 8290 . prokMSA_id:015187 M58830 Lactobacillus sanfranciscensis str. Kline L-2 ATCC 27651 . prokMSA_id:015182 M59295 Lactobacillus sp. str. L 343 ATCC 13133. prokMSA_id:015177 NONE Lactobacillus kefiri ATCC 35411 . prokMSA_id:015181 X61132 Lactobacillus sanfranciscensis JCM 5668 . prokMSA_id:015184 X61139 Lactobacillus buchneri NCDO 110 . 2.30.7.17.8 L.MALI_SUBGROUP 107 seqs 2.30.7.17.8.001 OTU 3 seqs prokMSA_id:028727 AF305930 Lactobacillus sp. 121B prokMSA_id:018965 AJ251560 Lactobacillus sp. LMK3 strain LMK3 prokMSA_id:091998 AJ514256 Lactobacillus sp. 123B 2.30.7.17.8.003 OTU 1 seq prokMSA_id:021717 AF371498 clone p-4087-6Wa3 2.30.7.17.8.004 OTU 19 seqs prokMSA_id:015205 AF089108 Lactobacillus salivarius subsp. salivarius str. H066 ATCC 11741 prokMSA_id:022623 AF201900 Chicken intestinal MRS 4.5 prokMSA_id:033452 AF335475 Lactobacillus salivarius subsp. salivarius complete prokMSA_id:032752 AF335884 Lactobacillus sp. clone LabB123 prokMSA_id:026645 AF335886 Lactobacillus sp. clone LabB129 prokMSA_id:048374 AF371497 clone p-4323-4Wa3 prokMSA_id:035499 AF420311 Lactobacillus salivarius prokMSA_id:064741 AY112743 Lactobacillus salivarius subsp. salivarius complete prokMSA_id:062014 AY137584 Lactobacillus salivarius subsp. salicinius strain JCM 1042 prokMSA_id:062013 AY137585 Lactobacillus salivarius subsp. salicinius strain JCM 1044 prokMSA_id:062015 AY137586 Lactobacillus salivarius subsp. salicinius strain JCM 1045 prokMSA_id:062011 AY137587 Lactobacillus salivarius subsp. salicinius strain JCM 1046 prokMSA_id:062012 AY137588 Lactobacillus salivarius subsp. salicinius strain JCM 1047 prokMSA_id:062010 AY137589 Lactobacillus salivarius subsp. salicinius strain JCM 1230 prokMSA_id:083938 AY262351 Lactobacillus salivarius prokMSA_id:092497 AY339176 Lactobacillus salivarius prokMSA_id:096905 AY389802 Lactobacillus salivarius strain RA2116 prokMSA_id:095759 AY389803 Lactobacillus salivarius strain RA2115 prokMSA_id:097946 AY389804 Lactobacillus salivarius strain RA2105 2.30.7.17.8.005 OTU 6 seqs prokMSA_id:015200 AF157049 Lactobacillus murinus str. ASF 361. prokMSA_id:024547 AF371500 clone p-487-o2 prokMSA_id:022999 AJ308393 clone S25-9 prokMSA_id:080227 AY186045 Lactobacillus murinus strain MP3 prokMSA_id:097991 AY239418 clone rc1-18 complete prokMSA_id:090383 AY324630 Lactobacillus murinus 2.30.7.17.8.006 OTU 2 seqs prokMSA_id:060302 AY129781 Paralactobacillus sp. clone GCPF4 prokMSA_id:055949 AY129801 Paralactobacillus sp. clone GCPF32 2.30.7.17.8.007 OTU 1 seq prokMSA_id:023628 AJ408207 equine intestinal sp. MW20 clone MW20 2.30.7.17.8.009 OTU 23 seqs prokMSA_id:026075 AB034088 rumen 3C3d-2 prokMSA_id:019363 AB034089 rumen 4C3d-19 prokMSA_id:048534 AB034090 rumen 5C3d-14 prokMSA_id:041435 AF335882 Lactobacillus sp. clone LabF11 prokMSA_id:023754 AF335887 Lactobacillus sp. clone LabS137 prokMSA_id:046828 AF335888 Lactobacillus sp. clone LabS144 prokMSA_id:028378 AF335889 Lactobacillus sp. clone LabS146 prokMSA_id:041379 AF335890 Lactobacillus sp. clone LabS152 prokMSA_id:035870 AF335899 Lactobacillus sp. clone LabF1 prokMSA_id:026567 AF335903 Lactobacillus sp. clone LabF68 prokMSA_id:032614 AF335904 sp. clone LabF70 prokMSA_id:043849 AF335905 Lactobacillus sp. clone LabF71 prokMSA_id:048951 AF335906 Lactobacillus sp. clone LabF73 prokMSA_id:034492 AF335917 Lactobacillus sp. clone LabS55 prokMSA_id:030219 AF371499 clone p-3424-SwA2 prokMSA_id:075439 AY190631 Lactobacillus sp. TSK G32-2 prokMSA_id:092670 AY341553 Lactobacillus ruminis strain BJ32B-1H prokMSA_id:092801 AY341555 Lactobacillus ruminis strain BJ32-2C prokMSA_id:092188 AY341556 Lactobacillus ruminis strain BJ32B-4L prokMSA_id:093151 AY341558 Lactobacillus ruminis strain BJ1-11 prokMSA_id:092686 AY341561 Lactobacillus ruminis strain BJ4-6W prokMSA_id:092426 AY341563 Lactobacillus ruminis strain BJ4-6T prokMSA_id:015201 M58828 Lactobacillus ruminis str. RF1 ATCC 27780 . 2.30.7.17.8.010 OTU 2 seqs prokMSA_id:077474 AF215875 Lactobacillus sp. KC45b prokMSA_id:026608 AF243164 Lactobacillus sp. KC45b 2.30.7.17.8.011 OTU 1 seq prokMSA_id:030354 AJ390445 soil PBS-II-34 2.30.7.17.8.012 OTU 3 seqs prokMSA_id:015208 AB001836 Lactobacillus aviarius prokMSA_id:015209 AB001837 Lactobacillus aviarius prokMSA_id:034957 AF376395 ckncm162-F3M.1B2 2.30.7.17.8.013 OTU 2 seqs prokMSA_id:015196 AB016864 Lactobacillus sp. prokMSA_id:038501 Y17500 Lactobacillus sp. LuE10 2.30.7.17.8.014 OTU 1 seq prokMSA_id:050977 AF316585 Lactobacillus sp. YE06 2.30.7.17.8.015 OTU 1 seq prokMSA_id:015202 AF197125 Lactobacillus C33LV5 str. C33LV5. 2.30.7.17.8.016 OTU 1 seq prokMSA_id:015206 AF049743 Lactobacillus LMG17676 LMG 17676. 2.30.7.17.8.017 OTU 1 seq prokMSA_id:074053 AB048833 Lactobacillus equi 2.30.7.17.8.018 OTU 3 seqs prokMSA_id:084709 AY255802 Lactobacillus saerimmeri prokMSA_id:096168 AY391825 Lactobacillus sp. T057 prokMSA_id:096727 AY391826 Lactobacillus sp. T059 2.30.7.17.8.019 OTU 1 seq prokMSA_id:089150 AJ576009 Lactobacillus sp. CECT 5924 strain CECT 5924 2.30.7.17.8.999 poor quality 36 seqs prokMSA_id:050353 AB023836 Lactobacillus sp. FS60-1 prokMSA_id:022995 AB023837 Lactobacillus sp. FS1111 prokMSA_id:065249 AB075689 Lactobacillus sp. clone:1C7 prokMSA_id:055969 AB081828 seuence clone:D-02 prokMSA_id:021953 AF293921 rumen clone 19 prokMSA_id:072752 AF316587 Lactobacillus sp. YE08 prokMSA_id:036138 AF335876 Lactobacillus sp. clone LabF368 prokMSA_id:040853 AF335879 Lactobacillus sp. clone LabF518 prokMSA_id:067912 AF365864 clone BT60PA9BC4b prokMSA_id:044872 AF368386 Lactobacillus sp. clone LabF748 prokMSA_id:036291 AF368388 Lactobacillus sp. clone LabF754 prokMSA_id:042251 AF368389 Lactobacillus sp. clone LabF761 prokMSA_id:019415 AF368390 Lactobacillus sp. clone LabF763 prokMSA_id:035461 AF375888 Lactobacillus sp. JSB1 prokMSA_id:022572 AF376158 ckncm254-c5h2 prokMSA_id:052465 AF445234 Swine fecal FPC71 prokMSA_id:048075 AF445235 Swine fecal FPC76 prokMSA_id:027871 AF445236 Swine fecal FPC68 prokMSA_id:061744 AJ417734 Lactobacillus suebicus strain DSM 5008 prokMSA_id:098401 AJ508721 Lactobacillus salivarius prokMSA_id:032215 AY006549 rumen prokMSA_id:066571 AY098490 Lactobacillus sp. AK113 prokMSA_id:074310 AY098491 Lactobacillus sp. AK21 prokMSA_id:092644 AY341532 Lactobacillus sp. BJ32B4S prokMSA_id:093017 AY341533 Lactobacillus sp. BJ32B3 prokMSA_id:092379 AY341534 Lactobacillus sp. BJ32B4D prokMSA_id:093003 AY341536 Lactobacillus sp. BJ4-6B prokMSA_id:015203 M58803 Lactobacillus agilis DSM 20509 . prokMSA_id:015198 M58807 Lactobacillus animalis ATCC 35046 . prokMSA_id:015207 M58808 Lactobacillus aviarius subsp. aviarius ATCC 43234 . prokMSA_id:015195 M58824 Lactobacillus mali ATCC 27053 . prokMSA_id:015199 M58826 Lactobacillus murinus ATCC 35020. prokMSA_id:015204 M59054 Lactobacillus salivarius subsp. salicinius str. H0268 ATCC 11742 prokMSA_id:028334 U81702 clone vadinDC09 prokMSA_id:051296 U81711 clone vadinHA01 prokMSA_id:015197 X61133 Lactobacillus animalis NCDO 2425. 2.30.7.17.9 L.CASEI_SUBGROUP 116 seqs 2.30.7.17.9.003 OTU 49 seqs prokMSA_id:019371 AB070609 Lactobacillus B5406 prokMSA_id:077375 AF215879 Lactobacillus sp. KLB58 prokMSA_id:077499 AF215883 Lactobacillus sp. F31 prokMSA_id:048136 AF243146 Lactobacillus rhamnosus strain F11 prokMSA_id:020863 AF243147 Lactobacillus paracasei subsp. paracasei strain F31 prokMSA_id:050029 AF243168 Lactobacillus paracasei subsp. paracasei strain KLB58 prokMSA_id:021135 AF306539 Lactobacillus sp. P8 prokMSA_id:048159 AF320255 Lactobacillus casei prokMSA_id:037595 AF335880 Lactobacillus sp. clone LabB103 prokMSA_id:041030 AF335881 Lactobacillus sp. clone LabB108 prokMSA_id:038848 AF335883 Lactobacillus sp. clone LabB121 prokMSA_id:023876 AF335885 Lactobacillus sp. clone LabB124 prokMSA_id:054114 AF335891 Lactobacillus sp. clone LabF154 prokMSA_id:022384 AF335892 Lactobacillus sp. clone LabF155 prokMSA_id:056018 AF349937 Lactobacillus sp. CR-609S clone crev-9 prokMSA_id:027334 AF385770 Lactobacillus casei strain BL23 prokMSA_id:079380 AF469172 Lactobacillus casei strain ATCC 393 prokMSA_id:077533 AF526388 Lactobacillus casei prokMSA_id:070438 AJ271854 Lactobacillus paracasei strain UK179 prokMSA_id:033166 AJ272201 Lactobacillus casei subsp. casei strain UK 318 prokMSA_id:059848 AJ507644 Lactobacillus casei strain E prokMSA_id:070342 AJ514239 Lactobacillus rhamnosus isolate MBRG 6.1 prokMSA_id:083495 AJ558112 Lactobacillus casei strain CWBI-B623 prokMSA_id:067359 AY091596 Lactobacillus casei strain KH-1 prokMSA_id:066614 AY094065 Lactobacillus sp. IDLAc prokMSA_id:082556 AY244628 Lactobacillus casei strain BJ G23-3 prokMSA_id:084122 AY244635 Lactobacillus casei strain BJ G23-2 prokMSA_id:087656 AY299486 Lactobacillus rhamnosus strain MCRF-271 prokMSA_id:087913 AY299487 Lactobacillus casei strain MCRF-284 prokMSA_id:087604 AY299488 Lactobacillus rhamnosus strain MCRF-412 prokMSA_id:089161 AY318806 Lactobacillus sp. CL3 prokMSA_id:092664 AY341543 Lactobacillus casei strain BJ13-1 prokMSA_id:093775 AY363371 Lactobacillus sp. rennanqilfy11 prokMSA_id:093510 AY363372 Lactobacillus sp. rennanqilfy14 prokMSA_id:093837 AY363376 Lactobacillus sp. rennanqilfy10 prokMSA_id:094117 AY363378 Lactobacillus sp. rennanqilfy20 prokMSA_id:093332 AY363379 Lactobacillus sp. rennanqilfy32 prokMSA_id:093505 AY363383 Lactobacillus sp. rennanqilfy61 prokMSA_id:093435 AY369076 Lactobacillus paracasei subsp. paracasei isolate Akira1 ; -23S intergenic spacer region complete ; and 23S prokMSA_id:015223 D16548 Lactobacillus paracasei subsp. paracasei JCM 1133. prokMSA_id:015224 D16549 Lactobacillus paracasei subsp. paracasei JCM 1181. prokMSA_id:015225 D16550 Lactobacillus paracasei subsp. tolerans JCM 1171 . prokMSA_id:015215 D16551 Lactobacillus casei subsp. casei JCM 1134 . prokMSA_id:015214 D16552 Lactobacillus rhamnosus JCM 1136 . prokMSA_id:015221 D79212 Lactobacillus paracasei subsp. paracasei JCM 8130 . prokMSA_id:015219 D86516 Lactobacillus zeae ATCC 15820 . prokMSA_id:046704 D86517 Lactobacillus casei prokMSA_id:015216 D86518 Lactobacillus casei str. = JCM 8129. prokMSA_id:015218 M23928 Lactobacillus casei subsp. casei ATCC 393 . 2.30.7.17.9.004 OTU 1 seq prokMSA_id:035081 AF371503 clone p-2594-9F5 2.30.7.17.9.005 OTU 1 seq prokMSA_id:039949 AF413523 Lactobacillus pantheri complete 2.30.7.17.9.006 OTU 1 seq prokMSA_id:046006 AF371502 clone p-2923-9F2 2.30.7.17.9.007 OTU 2 seqs prokMSA_id:015211 AF000162 Lactobacillus manihotivorans str. OND 32 LMG 18010 . prokMSA_id:015212 AF000163 Lactobacillus manihotivorans str. YAM I LMG 18011. 2.30.7.17.9.008 OTU 1 seq prokMSA_id:015222 AJ132757 Lactobacillus LM-17 str. LM-17. 2.30.7.17.9.009 OTU 1 seq prokMSA_id:077419 AF215881 Lactobacillus sp. F11 2.30.7.17.9.010 OTU 1 seq prokMSA_id:088564 AJ575744 Lactobacillus suebicus strain CECT 5917T 2.30.7.17.9.011 OTU 1 seq prokMSA_id:095994 AJ508723 Lactobacillus rhamnosus 2.30.7.17.9.999 poor quality 58 seqs prokMSA_id:082842 AB106342 Lactobacillus casei prokMSA_id:034752 AF095561 Lactobacillus casei clone Pz322 prokMSA_id:038401 AF106613 Lactobacillus casei prokMSA_id:022499 AF261765 Lactobacillus rhamnosus prokMSA_id:050615 AF261766 Lactobacillus rhamnosus prokMSA_id:072014 AF261767 Lactobacillus rhamnosus prokMSA_id:041458 AF335874 Lactobacillus sp. clone LabF363 prokMSA_id:030859 AF335875 Lactobacillus sp. clone LabF365 prokMSA_id:024738 AF368384 Lactobacillus sp. clone LabF723 prokMSA_id:018157 AF375887 Lactobacillus rhamnosus strain RT1 prokMSA_id:032058 AF375891 Lactobacillus zeae strain JVW4 prokMSA_id:042412 AF375893 Lactobacillus casei strain JSW10 prokMSA_id:017012 AF375896 Lactobacillus rhamnosus strain JSW10 prokMSA_id:032786 AF375897 Lactobacillus rhamnosus strain MAB22 prokMSA_id:041563 AF375898 Lactobacillus rhamnosus strain RB4 prokMSA_id:041038 AF375906 Lactobacillus zeae strain MATT9 prokMSA_id:044235 AF375909 Lactobacillus casei strain RRB5 prokMSA_id:042838 AF375918 Lactobacillus rhamnosus strain GYB9 prokMSA_id:031198 AF375931 Lactobacillus casei strain YDT21 prokMSA_id:062380 AF404708 Lactobacillus casei clone L27 prokMSA_id:037287 AF437514 clone PDSB001 prokMSA_id:043643 AF437529 clone PDSB021 prokMSA_id:047860 AF437541 clone PDSB038 prokMSA_id:051427 AF437596 clone PDSB105 prokMSA_id:071230 AJ271853 Lactobacillus paracasei strain UK1195 prokMSA_id:073609 AJ272010 Lactobacillus paracasei strain UK 3.338 prokMSA_id:059493 AJ508362 Lactobacillus paracasei . isolate MBRG 1.4 prokMSA_id:080725 AY186043 Lactobacillus casei strain PB2 prokMSA_id:080019 AY186046 Lactobacillus paracasei strain PB4 prokMSA_id:079307 AY196966 Lactobacillus paracasei subsp. paracasei strain CECT 4022 prokMSA_id:079225 AY196967 Lactobacillus casei strain CECT 5275 prokMSA_id:079544 AY196968 Lactobacillus casei strain 64H prokMSA_id:079440 AY196969 Lactobacillus casei strain CECT 4040 prokMSA_id:079258 AY196970 Lactobacillus casei prokMSA_id:079567 AY196971 Lactobacillus casei strain CECT 277 prokMSA_id:079401 AY196972 Lactobacillus casei strain CECT 4043 prokMSA_id:079274 AY196973 Lactobacillus casei strain CECT 4045 prokMSA_id:079177 AY196974 Lactobacillus casei strain CECT 11578 prokMSA_id:079114 AY196975 Lactobacillus casei strain ATCC 334 prokMSA_id:079118 AY196976 Lactobacillus casei strain ATCC 4646 prokMSA_id:079152 AY196978 Lactobacillus casei subsp. casei ATCC 393 prokMSA_id:079468 AY196979 Lactobacillus zeae strain ATCC 15820 prokMSA_id:088227 AY318816 Lactobacillus sp. EL6 prokMSA_id:089804 AY318817 Lactobacillus sp. EL7 prokMSA_id:092001 AY332391 Lactobacillus sp. rennanqilyf13 prokMSA_id:091066 AY332393 Lactobacillus sp. rennanqilyf9 prokMSA_id:091147 AY332394 Lactobacillus sp. rennanqilyf8 prokMSA_id:091774 AY332395 Lactobacillus sp. rennanqilyf7 prokMSA_id:093488 AY339128 Lactobacillus sp. rennanqilyf5 complete prokMSA_id:093234 AY363373 Lactobacillus sp. rennanqilfy15 prokMSA_id:093982 AY363374 Lactobacillus sp. rennanqilfy2 prokMSA_id:094222 AY363381 Lactobacillus sp. rennanqilfy34 prokMSA_id:093227 AY363384 Lactobacillus sp. rennanqilfy16 prokMSA_id:094001 AY363385 Lactobacillus sp. rennanqilfy17 prokMSA_id:015213 M58815 Lactobacillus rhamnosus DSM 20021 . prokMSA_id:015210 M58831 Lactobacillus sharpeae DSM 20505 . prokMSA_id:015220 NONE Lactobacillus casei subsp. casei ATCC 334. prokMSA_id:015217 X61135 Lactobacillus casei subsp. casei NCDO 161 . 2.30.7.17.10 L.BIFERMENTANS_SUBGROUP 10 seqs 2.30.7.17.10.001 OTU 1 seq prokMSA_id:072207 AF316588 Lactobacillus sp. YE10 2.30.7.17.10.002 OTU 3 seqs prokMSA_id:072216 AF316586 Lactobacillus sp. YE07 prokMSA_id:089733 AJ576007 Lactobacillus sp. CECT 5922 strain CECT 5922 prokMSA_id:089972 AJ576008 Lactobacillus sp. CECT 5923 strain CECT 5923 2.30.7.17.10.003 OTU 1 seq prokMSA_id:090388 AJ575741 Lactobacillus coryniformis subsp. torquens strain CECT 4129 2.30.7.17.10.999 poor quality 5 seqs prokMSA_id:068632 AB081824 seuence clone:C-01 prokMSA_id:026004 AF228698 Lactobacillus coryniformis subsp. coryniformis prokMSA_id:015228 D31680 Lactobacillus bifermentans JCM 1094. prokMSA_id:015227 M58809 Lactobacillus bifermentans ATCC 35409 . prokMSA_id:015226 M58813 Lactobacillus coryniformis subsp. coryniformis ATCC 25602 . 2.30.7.17.11 L.PEROLENS_SUBGROUP 10 seqs 2.30.7.17.11.002 OTU 1 seq prokMSA_id:036943 AB033209 Lactobacillus algidus 2.30.7.17.11.003 OTU 1 seq prokMSA_id:015229 D87679 Pediococcus dextrinicus str. L95 JCM 5887 . 2.30.7.17.11.004 OTU 1 seq prokMSA_id:015230 AF049745 Lactobacillus LMG17710 LMG 17710. 2.30.7.17.11.006 OTU 4 seqs prokMSA_id:015234 AB005739 Lactobacillus sp. str. LA-6. prokMSA_id:036168 E17066 Lactobacillus sp. AB No.434 prokMSA_id:015232 Y19167 Lactobacillus perolens str. L532. prokMSA_id:015233 Y19168 Lactobacillus perolens str. L534. 2.30.7.17.11.999 poor quality 3 seqs prokMSA_id:015231 AF049742 LMG 17714. prokMSA_id:019493 AF296653 Lactobacillus sp. 4B31 small subunit prokMSA_id:062366 AF404726 Pediococcus dextrinicus clone P17 2.30.7.17.12 L.SAKEISAK_SUBGROUP 31 seqs 2.30.7.17.12.001 OTU 21 seqs prokMSA_id:017126 AF335901 Lactobacillus sp. clone LabF45 prokMSA_id:041812 AF335902 sp. clone LabF67 prokMSA_id:027633 AF401673 Lactobacillus sakei operon and rrnB operon prokMSA_id:033824 AJ270951 Lactobacillus curvatus prokMSA_id:035674 AY038634 clone GL182.39 prokMSA_id:036417 AY038635 clone GL178.16 prokMSA_id:033531 AY038636 clone GL184.23 prokMSA_id:052229 AY038637 clone GL178.12 prokMSA_id:081933 AY204889 Lactobacillus curvatus subsp. melibiosus strain CCUG 34545 small subunit prokMSA_id:082190 AY204890 Lactobacillus curvatus strain PSTJA3a small subunit prokMSA_id:081329 AY204891 Lactobacillus curvatus strain YMRS3a small subunit prokMSA_id:081991 AY204892 Lactobacillus sakei subsp. carnosus strain CCUG 31331 small subunit prokMSA_id:082221 AY204893 Lactobacillus sakei subsp. sakei strain DSM 20017 small subunit prokMSA_id:082165 AY204894 Lactobacillus curvatus subsp. curvatus small subunit prokMSA_id:081067 AY204895 Lactobacillus sakei strain HNMRS2c small subunit prokMSA_id:082312 AY204896 Lactobacillus sakei strain HNSL5a small subunit prokMSA_id:081036 AY204897 Lactobacillus sakei strain HNSL5c small subunit prokMSA_id:082120 AY204898 Lactobacillus sakei strain ITSL2c small subunit prokMSA_id:090569 AY323236 Lactobacillus sakei strain CRL1424 prokMSA_id:092805 AY357581 Lactobacillus sakei strain R09 small subunit prokMSA_id:015236 D16553 Lactobacillus casei subsp. fusiformis str. = JCM 1177. 2.30.7.17.12.002 OTU 1 seq prokMSA_id:049102 AB063479 Lactobacillus fuchuensis 2.30.7.17.12.003 OTU 1 seq prokMSA_id:078102 AJ514432 clone ASG4 2.30.7.17.12.004 OTU 1 seq prokMSA_id:090649 AY323815 Lactobacillus sp. clone KMJ-0-43 2.30.7.17.12.999 poor quality 7 seqs prokMSA_id:041617 AF368382 Lactobacillus sp. clone LabF703 prokMSA_id:049176 AF368385 Lactobacillus sp. clone LabF747 prokMSA_id:041719 AF368387 Lactobacillus sp. clone LabF749 prokMSA_id:086600 AY230231 Lactobacillus curvatus strain L5 prokMSA_id:089218 AY318826 Lactobacillus sp. IL3 prokMSA_id:094861 AY375292 Lactobacillus curvatus strain R28 prokMSA_id:015235 M58829 Lactobacillus sakei subsp. sakei ATCC 15521 . 2.30.7.18 CARNOBACTERIUM_GROUP 152 seqs 2.30.7.18.1 AIC.OTITIS_SUBGROUP 46 seqs 2.30.7.18.1.002 OTU 1 seq prokMSA_id:066513 AY100571 clone cvf63043 2.30.7.18.1.003 OTU 1 seq prokMSA_id:066514 AY100570 clone cvf63031 2.30.7.18.1.004 OTU 3 seqs prokMSA_id:015238 AF124033 unnamed organism. prokMSA_id:015239 AF124034 unnamed organism. prokMSA_id:015240 AF124041 unnamed organism. 2.30.7.18.1.005 OTU 1 seq prokMSA_id:015241 X70907 Dolosigranulum pigrum str. R91/1468 NCFB 2975 . 2.30.7.18.1.007 OTU 32 seqs prokMSA_id:031466 AF193887 Alloiococcus otitis prokMSA_id:078529 AY189528 Alloiococcus sp. clone EarCan001 prokMSA_id:078836 AY189529 Alloiococcus sp. clone EarCan002 prokMSA_id:078592 AY189530 Alloiococcus sp. clone EarCan003 prokMSA_id:078826 AY189531 Alloiococcus sp. clone EarCan004 prokMSA_id:078769 AY189533 Alloiococcus sp. clone EarCan006 prokMSA_id:078487 AY189534 Alloiococcus sp. clone EarCan007 prokMSA_id:078793 AY189535 Alloiococcus sp. clone EarCan008 prokMSA_id:078904 AY189536 Alloiococcus sp. clone EarCan009 prokMSA_id:078876 AY189538 Alloiococcus sp. clone EarCan011 prokMSA_id:078570 AY189539 Alloiococcus sp. clone EarCan012 prokMSA_id:079000 AY189540 Alloiococcus sp. clone EarCan013 prokMSA_id:078798 AY189541 Alloiococcus sp. clone EarCan014 prokMSA_id:078972 AY189542 Alloiococcus sp. clone EarCan015 prokMSA_id:078463 AY189543 Alloiococcus sp. clone EarCan016 prokMSA_id:079003 AY189544 Alloiococcus sp. clone EarCan017 prokMSA_id:078509 AY189546 Alloiococcus sp. clone EarCan019 prokMSA_id:078952 AY189547 Alloiococcus sp. clone EarCan020 prokMSA_id:078561 AY189548 Alloiococcus sp. clone EarCan021 prokMSA_id:078805 AY189549 Alloiococcus sp. clone EarCan022 prokMSA_id:078777 AY189550 Alloiococcus sp. clone EarCan023 prokMSA_id:078958 AY189551 Alloiococcus sp. clone EarCan024 prokMSA_id:078465 AY189552 Alloiococcus sp. clone EarCan025 prokMSA_id:078412 AY189553 Alloiococcus sp. clone EarCan026 prokMSA_id:078481 AY189554 Alloiococcus sp. clone EarCan027 prokMSA_id:078689 AY189555 Alloiococcus sp. clone EarCan028 prokMSA_id:078870 AY189556 Alloiococcus sp. clone EarCan029 prokMSA_id:078444 AY189557 Alloiococcus sp. clone EarCan030 prokMSA_id:078708 AY189558 Alloiococcus sp. clone EarCan031 prokMSA_id:078938 AY189559 Alloiococcus sp. clone EarCan032 prokMSA_id:078587 AY189560 Alloiococcus sp. clone EarCan033 prokMSA_id:015237 X59765 Alloiococcus otitis NCFB 2890 . 2.30.7.18.1.008 OTU 1 seq prokMSA_id:078893 AY189532 Alloiococcus sp. clone EarCan005 2.30.7.18.1.999 poor quality 7 seqs prokMSA_id:051430 AB029418 24-45:2 prokMSA_id:051943 AF193886 Dolosigranulum pigrum prokMSA_id:079021 AY179185 Alloiococcus otitis clone ALK-6 prokMSA_id:078848 AY189537 Alloiococcus sp. clone EarCan010 prokMSA_id:078489 AY189545 Alloiococcus sp. clone EarCan018 prokMSA_id:094174 AY357994 cEV59 prokMSA_id:015242 X91284 Bangombe boreholes at depth of 5-105m clone G32. 2.30.7.18.2 CRN.DIVERGENS_SUBGROUP 103 seqs 2.30.7.18.2.004 OTU 7 seqs prokMSA_id:015260 AF076637 Carnobacterium LV62:W1 str. LV62:W1. prokMSA_id:015261 AF113133 Carnobacterium Y6 str. Y6. prokMSA_id:019355 AF425608 Carnobacterium viridans prokMSA_id:044929 AF450136 Carnobacterium sp. FTR-1 prokMSA_id:069113 AF513388 Carnobacterium sp. 17-4 prokMSA_id:015257 L08623 Carnobacterium alterfunditum ACAM 311. prokMSA_id:015258 Z73313 Carnobacterium sp. str. K1. 2.30.7.18.2.006 OTU 1 seq prokMSA_id:024332 AF451276 Carnobacterium sp. D4 2.30.7.18.2.008 OTU 17 seqs prokMSA_id:026605 AF244371 Nostocoida limicola I strain Ben200 prokMSA_id:047450 AF244372 Nostocoida limicola I strain Ben201 prokMSA_id:037505 AF244375 Nostocoida limicola I strain Ben77 prokMSA_id:029998 AF255736 Nostocoida limicola I prokMSA_id:019689 AF276462 clone RFLP 102E prokMSA_id:028044 AF394926 Lactosphaera sp. PMagG1 prokMSA_id:034045 AJ296179 Ruminococcus palustris strain DSM 9172T prokMSA_id:047658 AJ306612 Trichococcus collinsii strain 37AN3 prokMSA_id:066187 AJ488077 clone IB-11 prokMSA_id:066180 AJ488083 clone IIA-2 prokMSA_id:078391 AJ514434 clone ASG6 prokMSA_id:077834 AJ514436 clone ASG8 prokMSA_id:077290 AJ535705 Trichococcus sp. Coc4 strain Coc4 prokMSA_id:091266 AY345412 K2-54 prokMSA_id:015246 L76599 Lactosphaera pasteurii str. KoTa2 ATCC 35945. prokMSA_id:015250 X87150 Lactosphaera pasteurii str. KoTa2 DSM 2381 . prokMSA_id:015254 Y17301 Trichococcus flocculiformis DSM 2094. 2.30.7.18.2.009 OTU 1 seq prokMSA_id:027088 X92169 sp. Lake Nakuru isolate WN16 2.30.7.18.2.010 OTU 2 seqs prokMSA_id:027852 AF317357 feedlot manure A77 prokMSA_id:071668 AF317367 feedlot manure B24 2.30.7.18.2.011 OTU 1 seq prokMSA_id:055452 AY100576 clone cvf56045 2.30.7.18.2.012 OTU 2 seqs prokMSA_id:033898 AF324204 low G+C Gram-positive clone pD12 prokMSA_id:069980 AY005049 Firmicutes sp. oral clone BX005 2.30.7.18.2.014 OTU 8 seqs prokMSA_id:061173 AB083406 Marinolactobacillus psychrotolerans strain:M13-2 prokMSA_id:061171 AB083407 Marinolactobacillus psychrotolerans strain:M13-3 prokMSA_id:061172 AB083408 Marinolactobacillus psychrotolerans strain:M13-4 prokMSA_id:061168 AB083409 Marinolactobacillus psychrotolerans strain:M13-5 prokMSA_id:061167 AB083410 Marinolactobacillus psychrotolerans strain:M13-6 prokMSA_id:055874 AB083411 Marinolactobacillus psychrotolerans strain:M13-7 prokMSA_id:061166 AB083412 Marinolactobacillus psychrotolerans strain:O1-1 prokMSA_id:061165 AB083413 Marinolactobacillus psychrotolerans strain:O21 2.30.7.18.2.015 OTU 5 seqs prokMSA_id:015251 AF143511 Alkalibacterium olivoapovliticus strain WW2-SN4a prokMSA_id:015252 AF143512 Alkalibacterium olivoapovliticus strain WW2-SN4c prokMSA_id:015253 AF143513 Alkalibacterium olivoapovliticus strain WW2-SN5 prokMSA_id:036593 AF275700 Hailaer soda lake F1 prokMSA_id:047180 AF275703 Hailaer soda lake F27 2.30.7.18.2.017 OTU 3 seqs prokMSA_id:037875 AF275702 Hailaer soda lake F24 prokMSA_id:035620 AF284789 Soda lake F26 prokMSA_id:092943 AY347313 Alkalibacterium sp. A-13 2.30.7.18.2.018 OTU 2 seqs prokMSA_id:073819 AF317369 feedlot manure B32 prokMSA_id:041248 AF445248 Swine manure pit PPC79 2.30.7.18.2.019 OTU 1 seq prokMSA_id:041252 AF276454 clone RFLP 31E 2.30.7.18.2.021 OTU 10 seqs prokMSA_id:036062 AF184247 Carnobacterium piscicola prokMSA_id:033349 AF270794 Carnobacterium piscicola T3 prokMSA_id:041655 AF270795 Carnobacterium piscicola T2 prokMSA_id:043769 AF270796 Lactobacillus maltaromicus N2 prokMSA_id:018976 AF270797 Lactobacillus maltaromicus N3 prokMSA_id:031022 AF270798 Lactobacillus maltaromicus T1 prokMSA_id:022650 AF451271 Carnobacterium sp. D35 prokMSA_id:071990 AF513391 Carnobacterium sp. 37-3-1 prokMSA_id:016452 AJ387905 Carnobacterium gallinarum strain DSM 4847 prokMSA_id:086975 AJ564738 Carnobacterium piscicola strain CECT 4020 2.30.7.18.2.022 OTU 7 seqs prokMSA_id:056246 AB083414 Carnobacterium mobile strain:DSM 4848 prokMSA_id:015245 AF061558 Carnobacterium St2 str. St2. prokMSA_id:069419 AF513387 Carnobacterium sp. 13-3 prokMSA_id:084009 AJ427446 Carnobacterium sp. strain R-7279 prokMSA_id:076919 AJ535202 Carnobacterium funditum prokMSA_id:083763 AY244979 rumen clone BS28 prokMSA_id:015243 S86170 Carnobacterium funditum str. pf3 DSM 5970 . 2.30.7.18.2.023 OTU 2 seqs prokMSA_id:043119 AJ271861 Granulicatella sp. M658/99/3 prokMSA_id:043965 Y16546 Atopobacter phocae strain m1590/94/2 2.30.7.18.2.024 OTU 1 seq prokMSA_id:048912 AF371533 clone p-2073-s959-2 2.30.7.18.2.025 OTU 1 seq prokMSA_id:066511 AY100573 clone cvf64044 2.30.7.18.2.026 OTU 1 seq prokMSA_id:015259 Y17300 Desemzia incerta DSM 20581 . 2.30.7.18.2.027 OTU 1 seq prokMSA_id:070059 AF513390 Carnobacterium sp. 22-6 2.30.7.18.2.028 OTU 2 seqs prokMSA_id:073996 AF317352 feedlot manure A20 prokMSA_id:071857 AF317370 feedlot manure B35 2.30.7.18.2.029 OTU 1 seq prokMSA_id:072452 AF513389 Carnobacterium 11-1 2.30.7.18.2.030 OTU 1 seq prokMSA_id:074620 AF317356 feedlot manure A71 2.30.7.18.2.031 OTU 1 seq prokMSA_id:076550 AY162943 clone ZB-Z25 2.30.7.18.2.032 OTU 1 seq prokMSA_id:078803 AB094468 Marinolactobacillus sp. MJYP.25.24 2.30.7.18.2.033 OTU 1 seq prokMSA_id:078988 AY189643 clone EarCan116 2.30.7.18.2.034 OTU 1 seq prokMSA_id:083314 AY231306 clone ER1_6 2.30.7.18.2.035 OTU 1 seq prokMSA_id:088238 AY117755 Carnobacterium sp. 14D1 2.30.7.18.2.999 poor quality 21 seqs prokMSA_id:015244 AF076638 Carnobacterium LV66 str. LV66. prokMSA_id:039545 AF181912 clone 5d/8 prokMSA_id:032818 AF193561 low G+C gram positive n35r prokMSA_id:020908 AF244370 Nostocoida limicola I strain Ben78 prokMSA_id:019063 AF244373 Nostocoida limicola I strain Ben202 prokMSA_id:054312 AF390937 clone ICBBB7 prokMSA_id:043936 AF445294 Swine manure pit PPC11 prokMSA_id:027385 AF445295 Swine manure pit PPC16 prokMSA_id:020163 AF451272 Carnobacterium sp. D5 prokMSA_id:063684 AF522923 clone 1g18 prokMSA_id:063682 AF522926 clone 5g18 prokMSA_id:053108 AJ317963 Carnobacterium mobile strain DSM 4848 strain prokMSA_id:015249 M58812 Carnobacterium piscicola. prokMSA_id:015247 M58816 Carnobacterium divergens ATCC 35677 . prokMSA_id:015256 M58825 Lactobacillus maltaromicus str. MX5 ATCC 27865 . prokMSA_id:015264 M98448 Carnococcus allantoicus str. NDP. prokMSA_id:015248 X54268 Carnobacterium piscicola NCDO 2762 . prokMSA_id:015263 X54269 Carnobacterium gallinarum NCFB 2766 . prokMSA_id:015255 X54270 Carnobacterium divergens NCDO 2763 . prokMSA_id:015262 X54271 Carnobacterium mobile NCFB 2765 . prokMSA_id:015265 X54420 Lactobacillus maltaromicus str. MX5 JCM 1154 . 2.30.7.18.3 DSZ.INCERTA_SUBGROUP 3 seqs 2.30.7.18.3.001 OTU 1 seq prokMSA_id:015266 Y14650 Desemzia incerta DSM 20581 . 2.30.7.18.3.999 poor quality 2 seqs prokMSA_id:015268 X84546 str. SBR2001. prokMSA_id:015267 X84557 str. SBR2013. 2.30.7.19 VAGOCOCCUS_GROUP 7 seqs 2.30.7.19.001 OTU 3 seqs prokMSA_id:081240 AY080979 Vagococcus sp. clone ckl17 prokMSA_id:082299 AY080981 Enterococcus sp. clone ckl18 prokMSA_id:082131 AY080982 Vagococcus sp. clone ckl20 2.30.7.19.999 poor quality 4 seqs prokMSA_id:036258 AB064501 Vagococcus sp. AER No. 101 prokMSA_id:053071 AB064502 Vagococcus sp. AER No. 106 prokMSA_id:015270 X54258 Vagococcus fluvialis NCDO 2497 . prokMSA_id:015269 X54272 Vagococcus salmoninarum str. OSI-68 NCFB 27777 . 2.30.7.20 ENTEROCOCCUS_GROUP 307 seqs 2.30.7.20.002 OTU 1 seq prokMSA_id:016707 AF253331 human infant D8E 2.30.7.20.003 OTU 6 seqs prokMSA_id:038324 AB041346 Tetragenococcus halophilus strain:FSB201 prokMSA_id:016995 AB041347 Tetragenococcus halophilus strain:FSB101 prokMSA_id:036890 AB041349 Tetragenococcus halophilus strain:FSB401 prokMSA_id:020595 AJ301843 Tetragenococcus halophilus strain DSM 20339 prokMSA_id:015271 D87680 Tetragenococcus halophilus JCM 5888 . prokMSA_id:015291 D88668 Tetragenococcus halophilus IAM 1676 . 2.30.7.20.006 OTU 3 seqs prokMSA_id:015296 AF061006 Enterococcus columbae ATCC 51263. prokMSA_id:017976 AJ301828 Enterococcus columbae strain LMG 11740 prokMSA_id:015297 Y18275 Enterococcus columbae NCFB 13013. 2.30.7.20.011 OTU 1 seq prokMSA_id:020210 AJ302648 Isobaculum melis isolate CCUG 37660T 2.30.7.20.012 OTU 1 seq prokMSA_id:020438 AB062833 clone:BCf6-17 2.30.7.20.013 OTU 1 seq prokMSA_id:020568 AJ301840 Enterococcus solitarius strain DSM 5634 2.30.7.20.014 OTU 1 seq prokMSA_id:070972 AF317351 feedlot manure A18 2.30.7.20.019 OTU 2 seqs prokMSA_id:034048 AH010478 prokMSA_id:027423 AY017051 Enterococcus sp. ALE-1 5'- 2.30.7.20.022 OTU 3 seqs prokMSA_id:037420 AJ301842 Melissococcus pluton strain LTH 3442 prokMSA_id:015336 X75751 Melissococcus pluton str. M43P NCDO 2443 . prokMSA_id:015284 X75752 Melissococcus pluton str. M40P NCDO 2440. 2.30.7.20.023 OTU 1 seq prokMSA_id:037654 AF395325 isopod gut clone RKPsBA 2.30.7.20.024 OTU 5 seqs prokMSA_id:015279 AF061009 Enterococcus cecorum ATCC 43198. prokMSA_id:048901 AF357562 mpn-isolate group 14 prokMSA_id:037798 AJ301827 Enterococcus cecorum strain LMG 12902 prokMSA_id:093993 AY365054 Enterococcus cecorum prokMSA_id:015280 Y18355 Enterococcus cecorum NCDO 2674. 2.30.7.20.025 OTU 1 seq prokMSA_id:040020 AF253358 human infant N13C 2.30.7.20.026 OTU 1 seq prokMSA_id:051254 AF224853 clone Car124rc 2.30.7.20.027 OTU 1 seq prokMSA_id:051831 AJ243326 Vagococcus fessus strain m2661/98/1 2.30.7.20.028 OTU 1 seq prokMSA_id:052399 AF317373 feedlot manure B5 2.30.7.20.029 OTU 2 seqs prokMSA_id:063832 AF454301 Bacillus sp. clone ML615J-28 prokMSA_id:062666 AF507895 low G+C Gram-positive clone ML602J-25 2.30.7.20.033 OTU 144 seqs prokMSA_id:015272 AB012212 Enterococcus faecalis str. JCM 5803 . prokMSA_id:015286 AB012213 Enterococcus faecium JCM 5804 . prokMSA_id:015302 AB015233 Enterococcus sp. str. GvF410. prokMSA_id:025976 AB018210 Enterococcus faecium strain E 26 prokMSA_id:029590 AB036835 Enterococcus faecalis complete prokMSA_id:062895 AB066266 Enterococcus mundtii prokMSA_id:058583 AB092693 Enterococcus faecalis complete prokMSA_id:057993 AB094188 clone:G-54 prokMSA_id:076134 AB098122 Enterococcus faecalis prokMSA_id:085425 AE016947 Enterococcus faecalis V583 section 1 of 11 of the complete genome prokMSA_id:084808 AE016950 Enterococcus faecalis V583 section 4 of 11 of the complete genome prokMSA_id:085640 AE016956 Enterococcus faecalis V583 section 10 of 11 of the complete genome prokMSA_id:082596 AE016957 Enterococcus faecalis V583 section 11 of 11 of the complete genome prokMSA_id:015307 AF039898 Enterococcus gallinarum str. 42. prokMSA_id:015308 AF039899 Enterococcus casseliflavus str. 32. prokMSA_id:015309 AF039900 Enterococcus gallinarum. prokMSA_id:015289 AF039901 Enterococcus faecium. prokMSA_id:015274 AF039902 Enterococcus faecalis. prokMSA_id:015310 AF039903 Enterococcus casseliflavus. prokMSA_id:015312 AF061000 Enterococcus durans ATCC 59607. prokMSA_id:015282 AF061001 Enterococcus sulfureus ATCC 49903. prokMSA_id:015313 AF061002 Enterococcus pseudoavium ATCC 49372. prokMSA_id:015314 AF061003 Enterococcus raffinosus str. Mayo Clinic laboratory strain. prokMSA_id:015315 AF061004 Enterococcus saccharolyticus ATCC 43076 . prokMSA_id:015316 AF061007 Enterococcus dispar ATCC 51266. prokMSA_id:015317 AF061008 Enterococcus avium str. Mayo Clinic laboratory strain. prokMSA_id:015318 AF061011 Enterococcus hirae ATCC 8043. prokMSA_id:015319 AF061012 Enterococcus malodoratus ATCC 43197. prokMSA_id:015320 AF061013 Enterococcus mundtii ATCC 43186. prokMSA_id:015287 AF070223 Enterococcus faecium str. GUCR. prokMSA_id:015273 AF070224 Enterococcus faecalis str. JH2-2. prokMSA_id:015277 AF076027 Enterococcus faecalis. prokMSA_id:050668 AF133535 Enterococcus avium prokMSA_id:029774 AF135452 sp. 1275b prokMSA_id:015288 AF145258 Enterococcus faecium str. 71380. prokMSA_id:069976 AF253332 human infant D8D prokMSA_id:070283 AF253347 human infant P10H prokMSA_id:072176 AF253396 human infant P10J prokMSA_id:016425 AF277567 Enterococcus gallinarum prokMSA_id:070378 AF286831 Enterococcus moraviensis prokMSA_id:028186 AF286832 Enterococcus haemoperoxidus prokMSA_id:057509 AF326472 Enterococcus ratti prokMSA_id:074276 AF335596 Enterococcus villorum prokMSA_id:067813 AF349929 Enterococcus sp. CR-300S clone crev-1 prokMSA_id:067810 AF349930 Enterococcus sp. CR-303S clone crev-2 prokMSA_id:067807 AF349934 Enterococcus sp. CR-3 clone crev-6 prokMSA_id:018966 AF357561 mpn-isolate group 13 prokMSA_id:037079 AF367977 Enterococcus casseliflavus CCM 4869 prokMSA_id:073484 AF367978 Enterococcus casseliflavus CCM 4870 prokMSA_id:051948 AF371531 clone p-2526-18B5 prokMSA_id:032550 AF371532 clone p-1938-s962-3 prokMSA_id:035969 AF395326 isopod gut clone RKPsAG prokMSA_id:026643 AF447490 Enterococcus faecalis prokMSA_id:031938 AF477496 Enterococcus faecalis strain PL9003 complete prokMSA_id:064383 AF515223 Enterococcus faecalis strain RO90 complete prokMSA_id:062987 AF526922 Enterococcus sp. clone T8-20 rrn prokMSA_id:061073 AF530321 clone cadhufec19a08yvb prokMSA_id:060256 AF539705 Enterococcus ratti prokMSA_id:073978 AJ133478 Enterococcus sp. isolate RfL6 prokMSA_id:072178 AJ271329 Enterococcus villorum strain LMG 12287 prokMSA_id:072561 AJ271848 Enterococcus faecalis strain UK1386 prokMSA_id:073318 AJ271856 Enterococcus faecalis strain UK873 prokMSA_id:074133 AJ272200 Enterococcus hirae strain UK 877 prokMSA_id:030497 AJ276352 Enterococcus rottae strain CCM4629 prokMSA_id:038180 AJ276353 Enterococcus sp. CCM4630 prokMSA_id:047702 AJ276354 Enterococcus durans strain DSM20633 prokMSA_id:035100 AJ276355 Enterococcus faecium strain DSM20477 prokMSA_id:074720 AJ276356 Enterococcus hirae strain DSM20160 prokMSA_id:050297 AJ276460 Enterococcus faecalis strain P7812 prokMSA_id:035549 AJ276461 Enterococcus sp. P8403 strain P8403 prokMSA_id:022749 AJ276462 Enterococcus sp. P7644 strain P7644 prokMSA_id:040247 AJ291731 Enterococcus faecium strain WI49 prokMSA_id:037425 AJ291732 Enterococcus faecium strain WI107 prokMSA_id:045325 AJ301825 Enterococcus avium strain LMG 10744 prokMSA_id:044126 AJ301826 Enterococcus casseliflavus strain LMG 10745 prokMSA_id:017444 AJ301829 Enterococcus dispar strain LMG 13521 prokMSA_id:039621 AJ301830 Enterococcus faecium strain LMG 11423 prokMSA_id:040693 AJ301831 Enterococcus faecalis strain LMG 7937 prokMSA_id:028797 AJ301832 Enterococcus flavescens strain LMG 13518 prokMSA_id:043140 AJ301833 Enterococcus gallinarum strain LMG 13129 prokMSA_id:037447 AJ301834 Enterococcus hirae strain LMG 6399 prokMSA_id:048898 AJ301835 Enterococcus malodoratus strain LMG 10747 prokMSA_id:074813 AJ301836 Enterococcus mundtii strain LMG 10748 prokMSA_id:040545 AJ301837 Enterococcus pseudoavium strain LMG 11426 prokMSA_id:020443 AJ301838 Enterococcus raffinosus strain LMG 12999 prokMSA_id:043998 AJ301839 Enterococcus saccharolyticus strain LMG 11427 prokMSA_id:053470 AJ301841 Enterococcus sulfureus strain LMG 13084 prokMSA_id:021403 AJ309563 Enterococcus azikeevi strain IB-A35 prokMSA_id:045428 AJ420799 Enterococcus hirae strain CECT279T prokMSA_id:050018 AJ420800 Enterococcus faecium strain CECT410T prokMSA_id:047779 AJ420801 Enterococcus durans strain CECT411T prokMSA_id:045618 AJ420802 Enterococcus flavescens strain CECT4481T prokMSA_id:046861 AJ420803 Enterococcus faecalis strain CECT481T prokMSA_id:042419 AJ420804 Enterococcus casseliflavus strain CECT969T prokMSA_id:019924 AJ420805 Enterococcus gallinarum strain CECT970T prokMSA_id:044890 AJ420806 Enterococcus mundtii strain CECT972T prokMSA_id:062639 AJ459875 clone E prokMSA_id:086647 AJ554205 Enterococcus hirae strain CECT 4081 prokMSA_id:094692 AJ582753 Enterococcus sp. TP1.5 strain TP1.5 prokMSA_id:018119 AY017052 Enterococcus sp. ALE-1 3'- prokMSA_id:072148 AY028437 Enterococcus phoeniculicola prokMSA_id:067869 AY033814 Enterococcus gilvus prokMSA_id:067867 AY033815 Enterococcus pallens prokMSA_id:049707 AY057055 Enterococcus faecium prokMSA_id:073020 AY098486 Enterococcus sp. AK89 prokMSA_id:072595 AY098492 Enterococcus sp. AK61 prokMSA_id:075795 AY156090 Enterococcus canis strain LMG 21553 prokMSA_id:075898 AY167933 Swine manure RT-2A prokMSA_id:076127 AY167946 Swine manure RT-5D prokMSA_id:075810 AY167958 Swine manure RT-19B prokMSA_id:075570 AY167960 Swine manure RT-21 prokMSA_id:076721 AY172570 Enterococcus faecium complete prokMSA_id:084132 AY184239 Enterococcus sulfureus strain A36202 prokMSA_id:089497 AY221599 soil clone HN1-35 prokMSA_id:088240 AY321375 Enterococcus sp. CDC PNS-E1 prokMSA_id:090623 AY321376 Enterococcus sp. CDC PNS-E2 prokMSA_id:090221 AY321377 Enterococcus sp. CDC PNS-E3 prokMSA_id:091127 AY345417 K24 prokMSA_id:095956 AY395018 Enterococcus faecalis prokMSA_id:097584 AY395019 Enterococcus sp. NAB15 prokMSA_id:096739 AY396046 Enterococcus hermanniensis strain 334 prokMSA_id:097983 AY396047 Enterococcus hermanniensis strain LMG 12317 prokMSA_id:098661 AY396048 Enterococcus hermanniensis strain LMG 13617 prokMSA_id:083107 NC_004668 Enterococcus faecalis V583 complete genome prokMSA_id:015300 NONE str. BAW1. prokMSA_id:015301 U30931 Enterococcus saccharolyticus. prokMSA_id:015285 X76177 Enterococcus sp. LMG 12316. prokMSA_id:015298 Y11621 Enterococcus asini str. AS2 DSM 11492 . prokMSA_id:015311 Y17302 Enterococcus hirae DSM 20160. prokMSA_id:015321 Y18160 Enterococcus gallinarum NCFB 2314. prokMSA_id:015322 Y18161 Enterococcus casseliflavus NCIMB 11449. prokMSA_id:015332 Y18274 Enterococcus avium NCFB 2369. prokMSA_id:015275 Y18293 Enterococcus faecalis. prokMSA_id:015290 Y18294 Enterococcus faecium NCFB 942. prokMSA_id:015323 Y18295 Enterococcus flavescens NCIMB 13226. prokMSA_id:015324 Y18296 Enterococcus raffinosus NCIMB 12901. prokMSA_id:015325 Y18339 Enterococcus malodoratus NCFB 846. prokMSA_id:015326 Y18340 Enterococcus mundtii NCFB 2375. prokMSA_id:015283 Y18341 Enterococcus sulfureus NCIMB 13117. prokMSA_id:015327 Y18354 Enterococcus hirae NCFB 1258. prokMSA_id:015328 Y18356 Enterococcus pseudoavium NCFB 2138. prokMSA_id:015329 Y18357 Enterococcus saccharolyticus NCDO 2594 . prokMSA_id:015330 Y18358 Enterococcus dispar NCIMB 13000. prokMSA_id:015331 Y18359 Enterococcus durans NCFB 596. 2.30.7.20.034 OTU 1 seq prokMSA_id:015276 Y17152 Vagococcus CCUG39187 str. m1134/97/1 CCUG 39187. 2.30.7.20.035 OTU 1 seq prokMSA_id:015292 D88824 Tetragenococcus muriaticus. 2.30.7.20.036 OTU 2 seqs prokMSA_id:015293 AF061010 Enterococcus solitarius ATCC 49428. prokMSA_id:015294 Y18338 Enterococcus solitarius NCIMB 12902. 2.30.7.20.037 OTU 1 seq prokMSA_id:071884 AJ271849 Enterococcus faecium strain UK1225 2.30.7.20.038 OTU 1 seq prokMSA_id:076723 AY167971 Swine manure RT-23B 2.30.7.20.039 OTU 1 seq prokMSA_id:077633 AB089062 Enterococcus sp. clone:Rs-D42 2.30.7.20.040 OTU 1 seq prokMSA_id:078915 AY179329 Vagococcus carniphilus 2.30.7.20.041 OTU 1 seq prokMSA_id:080625 AY186039 Enterococcus hirae strain MP1 2.30.7.20.042 OTU 1 seq prokMSA_id:081912 AB100496 Enterococcus sp. clone: Rs-L13 2.30.7.20.999 poor quality 122 seqs prokMSA_id:029012 AB041348 Tetragenococcus halophilus strain:FSB301 prokMSA_id:048570 AB044935 Tetragenococcus halophilus strain:HSCC 1033 prokMSA_id:028075 AB044936 Tetragenococcus halophilus strain:HSCC 1032 prokMSA_id:032050 AB044938 Tetragenococcus halophilus strain:HSCC 579 prokMSA_id:044742 AB045395 Tetragenococcus halophilus prokMSA_id:047408 AB045397 Tetragenococcus halophilus prokMSA_id:023266 AB045561 Tetragenococcus halophilus prokMSA_id:038665 AB045562 Tetragenococcus halophilus prokMSA_id:042532 AB062557 Enterococcus faecium prokMSA_id:025497 AB062559 Enterococcus durans strain:MY411 prokMSA_id:025239 AB062560 Enterococcus hirae strain:MI060 prokMSA_id:040155 AB062561 Enterococcus durans strain:GM097 prokMSA_id:026130 AB062562 Enterococcus durans strain:MR103 prokMSA_id:017661 AB062563 Enterococcus durans strain:MY001 prokMSA_id:039881 AB062564 Enterococcus durans strain:IZ010 prokMSA_id:042241 AB062565 Enterococcus durans strain:OK220 prokMSA_id:065256 AB075683 Enterococcus sp. C42 prokMSA_id:056635 AB075692 Enterococcus sp. clone:2F11 prokMSA_id:058731 AB082380 Tetragenococcus halophilus prokMSA_id:064358 AB086442 clone:SI13 prokMSA_id:078750 AB100597 Enterococcus faecalis strain:RJ-11 prokMSA_id:086226 AB106343 Tetragenococcus halophilus strain: FRA000038 prokMSA_id:083321 AB106344 Tetragenococcus halophilus strain: FRA000040 prokMSA_id:030242 AF023101 Enterococcus faecalis VRE stock No. 1492 prokMSA_id:016389 AF023102 Enterococcus faecalis VRE stock No. 368 prokMSA_id:048174 AF023103 Enterococcus gallinarum prokMSA_id:045638 AF023104 Enterococcus casseliflavus prokMSA_id:038201 AF096606 isolate RCA06 prokMSA_id:043743 AF096614 isolate RCA66 prokMSA_id:028882 AF096616 isolate RCA41 prokMSA_id:047493 AF106611 Enterococcus faecium prokMSA_id:039376 AF106614 Enterococcus sp. BL193-5 prokMSA_id:042198 AF106615 Enterococcus gallinarum prokMSA_id:074725 AF108379 Enterococcus faecalis prokMSA_id:045901 AF108380 Enterococcus faecium prokMSA_id:033502 AF241576 Enterococcus mundtii prokMSA_id:071362 AF253382 human infant L83M prokMSA_id:073971 AF253398 human infant D6C prokMSA_id:071815 AF317378 feedlot manure B57 prokMSA_id:033430 AF375920 Enterococcus avium strain MLB12 prokMSA_id:049411 AF376244 ckncm011-DC13 prokMSA_id:048023 AF376328 ckncm095-B412.1C2 prokMSA_id:034659 AF445249 Swine manure pit PPC10 prokMSA_id:024796 AF445278 Swine manure pit PPC27A prokMSA_id:019292 AF445279 Swine manure pit PPC27B prokMSA_id:044728 AF445280 Swine manure pit PPC30A prokMSA_id:030434 AF445281 Swine manure pit PPC45 prokMSA_id:021053 AF445282 Swine manure pit PPC2 prokMSA_id:029317 AF445283 Swine manure pit PPC44 prokMSA_id:034227 AF445284 Swine manure pit PPC107 prokMSA_id:025141 AF445296 Swine manure pit PPC8 prokMSA_id:038807 AF445297 Swine manure pit PPC9 prokMSA_id:044386 AF445298 Swine manure pit PPC105 prokMSA_id:035588 AF445299 Swine manure pit PPC34B prokMSA_id:047155 AF445300 Swine manure pit PPC38 prokMSA_id:024722 AF445301 Swine manure pit PPC32 prokMSA_id:023445 AF445302 Swine manure pit PPC34A prokMSA_id:044717 AF445303 Swine manure pit PPC103 prokMSA_id:040836 AF445304 Swine manure pit PPC4A prokMSA_id:026572 AF445305 Swine manure pit PPC4B prokMSA_id:038875 AF445306 Swine manure pit PPC94 prokMSA_id:054186 AF445307 Swine manure pit PPC15 prokMSA_id:050326 AF445308 Swine manure pit PPC35A prokMSA_id:026674 AF450009 Swine manure pit PPC33 prokMSA_id:020208 AF450011 Swine fecal FPC51 prokMSA_id:067514 AF493864 clone 25 prokMSA_id:067168 AF498081 Enterococcus faecalis isolate DGGE gel band M4 prokMSA_id:064515 AF517535 BnMSX22 prokMSA_id:091749 AF529204 Enterococcus faecium strain AOD081EF prokMSA_id:061080 AF530310 clone cadhufec093h7 prokMSA_id:070181 AJ132470 Enterococcus sp. prokMSA_id:072554 AJ271847 Enterococcus faecalis strain UK1399 prokMSA_id:070176 AJ271855 Enterococcus faecalis strain UK755 prokMSA_id:049594 AJ404523 Enterobacterium EN5 prokMSA_id:060192 AJ490512 Enterococcus durans strain 2F prokMSA_id:060191 AJ490513 Enterococcus faecium strain 3D prokMSA_id:060190 AJ490514 Enterococcus faecalis strain 6C prokMSA_id:056394 AJ490515 Enterococcus faecalis strain 7A prokMSA_id:060189 AJ490516 Enterococcus faecalis strain 7B prokMSA_id:060188 AJ490517 Enterococcus faecalis strain 7C prokMSA_id:060186 AJ490518 Enterococcus faecalis strain 7D prokMSA_id:060185 AJ490519 Enterococcus faecium strain 8B prokMSA_id:055528 AJ490520 Enterococcus faecium strain 8C prokMSA_id:060182 AJ490521 Enterococcus faecium strain 8G prokMSA_id:057530 AJ516051 Enterococcus faecalis strain LE/27 prokMSA_id:057525 AJ516058 Enterococcus faecalis strain B/52 prokMSA_id:078609 AJ536436 Enterococcus mundtii isolate 8:3 591BP prokMSA_id:079048 AJ536437 Enterococcus mundtii isolate 8:3 644BP prokMSA_id:051145 AY017053 Enterococcus sp. CLE-2 prokMSA_id:097271 AY239468 Enterococcus sp. cB-53 complete prokMSA_id:084170 AY256595 DGGE band S2-5 prokMSA_id:087723 AY269871 Enterococcus sp. 8 prokMSA_id:090358 AY307994 clone UB652 prokMSA_id:093045 AY346315 Enterococcus gallinarum HPC254 prokMSA_id:093015 AY346316 Enterococcus gallinarum HPC254 prokMSA_id:094927 AY375293 Enterococcus faecalis strain SF02 prokMSA_id:015335 L00924 Enterococcus hirae ATCC 9790. prokMSA_id:015299 L00925 Enterococcus hirae ATCC 9790. prokMSA_id:015333 NONE Enterococcus faecalis. prokMSA_id:015278 X54290 Enterococcus cecorum. prokMSA_id:015281 X55133 Enterococcus sulfureus str. MUTK 31 NCDO 2379 . prokMSA_id:015337 X55766 Enterococcus saccharolyticus NCDO 2594 . prokMSA_id:026955 X55767 S.saccharolyticus prokMSA_id:015295 X56422 Enterococcus columbae str. STR 345 NCIMB 13013 . prokMSA_id:015334 Y12905 Enterococcus faecalis str. ATCC 19433 . prokMSA_id:042876 Y12906 E.faecium strain ATTC 19434 CCUG 542 prokMSA_id:041055 Y12907 E.avium strain ATTC 14025 CCUG 7983 prokMSA_id:015303 Y12908 Enterococcus casseliflavus str. ATTC 25788 CCUG 18657. prokMSA_id:018691 Y12909 E.durans strain ATTC 19432 CCUG 7972 prokMSA_id:015304 Y12910 Enterococcus gallinarum CCUG 18658. prokMSA_id:040140 Y12911 E.malodoratus strain CCUG 30572 prokMSA_id:031786 Y12912 E.hirae strain ATTC 8043 CCUG 18659 prokMSA_id:016290 Y12913 E.mundtii strain CCUG 18656 prokMSA_id:033645 Y12914 E.raffinosus strain CCUG 29292 prokMSA_id:016295 Y12915 E.solitarius strain CCUG 29293 prokMSA_id:038314 Y12916 E.pseudoavium strain CCUG 33310 prokMSA_id:017193 Y12917 E.cecorum strain CCUG 27299 prokMSA_id:032961 Y12918 E.columbae strain CCUG 27894 prokMSA_id:040824 Y12919 E.saccharolyticus strain ATTC 43076 CCUG 33311 prokMSA_id:015305 Y12920 Enterococcus dispar CCUG 33309. prokMSA_id:045851 Y12921 E.sulfureus strain CCUG 33313 prokMSA_id:015306 Y12923 Enterococcus flavescens CCUG 30567. 2.30.7.21 STREPTOCOCCI 926 seqs 2.30.7.21.1 LCC.LACTIS_SUBGROUP 131 seqs 2.30.7.21.1.001 OTU 11 seqs prokMSA_id:015348 AB012306 Lactococcus garvieae JCM 8735. prokMSA_id:042931 AB018211 Lactococcus garvieae strain E 1 prokMSA_id:039953 AB026843 Enterococcus seriolicida prokMSA_id:044780 AB079369 Enterococcus sp. U1-1 prokMSA_id:045788 AB079371 Enterococcus sp. U5-1 prokMSA_id:036458 AF061005 Enterococcus seriolicida prokMSA_id:045250 AF283499 Lactococcus garvieae complete prokMSA_id:028491 AF352163 Lactococcus garvieae strain FLG2 prokMSA_id:019276 AF352164 Lactococcus garvieae strain FLG4 prokMSA_id:048070 AF352165 Lactococcus garvieae strain FLG5 prokMSA_id:031382 AF352166 Lactococcus garvieae strain FLG12 2.30.7.21.1.004 OTU 48 seqs prokMSA_id:058588 AB083092 Lactococcus lactis subsp. lactis prokMSA_id:084723 AB100791 Lactococcus lactis subsp. cremoris strain: NIRD Ho-6 prokMSA_id:083390 AB100792 Lactococcus lactis subsp. cremoris strain: NIAI H-61 prokMSA_id:085961 AB100793 Lactococcus lactis subsp. cremoris strain: NIRD HC-1 prokMSA_id:083464 AB100794 Lactococcus lactis subsp. cremoris strain: NIRD 924 prokMSA_id:085252 AB100795 Lactococcus lactis subsp. lactis strain: NIAI 527 prokMSA_id:082870 AB100796 Lactococcus lactis strain: NIRD 712 prokMSA_id:083027 AB100797 Lactococcus lactis subsp. lactis strain: NIAI SLN prokMSA_id:085709 AB100798 Lactococcus lactis subsp. lactis strain: NIRD SC-10 prokMSA_id:084491 AB100799 Lactococcus lactis subsp. lactis bv. diacetylactis strain: NIAI N-7 prokMSA_id:083318 AB100800 Lactococcus lactis subsp. lactis bv. diacetylactis strain: NIRD DRC-1 prokMSA_id:083325 AB100801 Lactococcus lactis subsp. lactis bv. diacetylactis strain: NIRD DRC-2 prokMSA_id:084466 AB100802 Lactococcus lactis subsp. cremoris strain: NCDO 607T prokMSA_id:083001 AB100803 Lactococcus lactis subsp. lactis strain: NCDO 604T prokMSA_id:084539 AB100804 Lactococcus lactis subsp. hordniae strain: NCDO 2181T prokMSA_id:084578 AB100805 Lactococcus lactis subsp. lactis bv. diacetylactis strain: ATCC 13675 prokMSA_id:092114 AB118033 Lactococcus lactis subsp. lactis strain:K335 prokMSA_id:092972 AB118034 Lactococcus lactis subsp. lactis strain:K336 prokMSA_id:093099 AB118035 Lactococcus lactis subsp. lactis strain:K337 prokMSA_id:092655 AB118036 Lactococcus lactis subsp. lactis strain:K338 prokMSA_id:092900 AB118037 Lactococcus lactis strain:JCM7638 prokMSA_id:048928 AE005176 Lactococcus lactis subsp. lactis IL1403 complete genome prokMSA_id:027665 AF270791 Lactococcus lactis N1 prokMSA_id:046602 AF270792 Lactococcus lactis N4 prokMSA_id:030402 AF408259 Lactococcus sp. clone KL-86-2-7 prokMSA_id:086118 AF493057 Lactococcus lactis subsp. lactis MR26 complete prokMSA_id:083439 AF493058 Lactococcus lactis subsp. lactis MR17 complete prokMSA_id:064379 AF515224 Lactococcus lactis subsp. lactis strain RO6 complete prokMSA_id:064382 AF515225 Lactococcus lactis subsp. lactis strain RO3 complete prokMSA_id:064380 AF515226 Lactococcus lactis subsp. lactis strain RO37 complete prokMSA_id:061066 AF530330 clone cadhufec20a02yvb prokMSA_id:069977 AJ271851 Lactococcus lactis and internal transcribed spacer 1 ITS1 strain UK1560 prokMSA_id:030166 AJ419572 Lactococcus lactis subsp. lactis strain LL3 prokMSA_id:064233 AJ421069 Lactococcus lactis subsp. lactis strain 14456 prokMSA_id:066568 AJ487019 amplicon F prokMSA_id:066049 AJ488173 Lactococcus lactis strain MRS1 prokMSA_id:066048 AJ488174 Lactococcus lactis strain MRS2 prokMSA_id:066047 AJ488175 Lactococcus lactis strain MRS5 prokMSA_id:066046 AJ488176 Lactococcus lactis strain 04 prokMSA_id:073083 AJ514246 Lactococcus lactis isolate MBRG 6.3 prokMSA_id:075483 AY167937 Swine manure RT-3A prokMSA_id:075681 AY167948 Swine manure RT-6B prokMSA_id:088608 AY325753 Lactococcus sp. isolate PCR amplicon RL 1936a prokMSA_id:089935 AY328550 HOClCi1 prokMSA_id:093048 AY348313 Lactococcus lactis Akira2 ; -23S intergenic spacer complete ; and 23S prokMSA_id:015345 M58836 Lactococcus lactis subsp. cremoris ATCC 19257 . prokMSA_id:054615 NC_002662 Lactococcus lactis subsp. lactis complete genome prokMSA_id:015343 X64887 Lactococcus lactis str. IL 1403. 2.30.7.21.1.005 OTU 1 seq prokMSA_id:055710 AF349933 Lactococcus sp. CR-317S clone crev-5 2.30.7.21.1.006 OTU 1 seq prokMSA_id:054794 AF408262 Streptococcus sp. clone KL-36-1-14 2.30.7.21.1.007 OTU 1 seq prokMSA_id:069992 AJ133479 Lactococcus sp. isolate TmLO5 2.30.7.21.1.008 OTU 1 seq prokMSA_id:078015 AB089063 Lactococcus sp. clone:Rs-C68 2.30.7.21.1.009 OTU 1 seq prokMSA_id:078223 AB089061 Lactococcus sp. clone:Rs-B70 2.30.7.21.1.010 OTU 1 seq prokMSA_id:084687 AY231311 clone ER1_11 2.30.7.21.1.011 OTU 1 seq prokMSA_id:086637 AY231304 clone ER1_4 2.30.7.21.1.012 OTU 1 seq prokMSA_id:092372 AY332754 Culex pipiens quinquefasciatus clone AP2-12 2.30.7.21.1.999 poor quality 64 seqs prokMSA_id:031825 AB011305 clone: MUG13 prokMSA_id:049026 AB011340 clone: TUG12 prokMSA_id:038004 AB030918 Lactococcus lactis strain:IEL2 prokMSA_id:052285 AB062556 Lactococcus sp. GM005 prokMSA_id:041274 AB062558 Lactococcus sp. GM330 prokMSA_id:096927 AB122036 Lactococcus lactis subsp. lactis prokMSA_id:024887 AF095538 Lactococcus lactis clone Pz513 prokMSA_id:024453 AF095542 Lactococcus lactis clone Pz547 prokMSA_id:044853 AF095544 clone Pz608 prokMSA_id:039929 AF095551 Lactococcus lactis clone Pz505 prokMSA_id:049448 AF095555 Lactococcus lactis clone Pz518 prokMSA_id:045586 AF095560 clone Pz638 prokMSA_id:016860 AF107514 SY2-77 prokMSA_id:015344 AF148970 str. STS_R2A_14. prokMSA_id:024794 AF323179 Lactococcus lactis prokMSA_id:049334 AF437568 clone PDSB066 prokMSA_id:037760 AF437569 clone PDSB067 prokMSA_id:027054 AF448264 clone DJAT-25 prokMSA_id:021115 AF448265 clone DJAT-124 prokMSA_id:024400 AF448267 clone DJAT-292 prokMSA_id:074788 AF448268 clone DJAT-430 prokMSA_id:077563 AF477821 low G+C Gram-positive clone AGCO40 prokMSA_id:067177 AF498065 Lactococcus lactis isolate DGGE gel band V4-5 prokMSA_id:072852 AJ133480 Lactococcus sp. isolate pegbd2 prokMSA_id:028403 AJ133481 Lactococcus sp. isolate TmLs4 prokMSA_id:040877 AJ314705 clone slf162 prokMSA_id:043882 AY006859 rumen prokMSA_id:057593 AY119417 clone AP1-1 prokMSA_id:057591 AY119418 clone AP1-10 prokMSA_id:057595 AY119419 clone AP1-13 prokMSA_id:057590 AY119420 clone AP1-14 prokMSA_id:057589 AY119422 clone AP1-18 prokMSA_id:057586 AY119423 clone AP1-19 prokMSA_id:057587 AY119424 clone AP1-20 prokMSA_id:057583 AY119427 clone AP1-34 prokMSA_id:057582 AY119428 clone AP1-35 prokMSA_id:057581 AY119429 clone AP1-36 prokMSA_id:057580 AY119430 clone AP1-38 prokMSA_id:057578 AY119431 clone AP1-41 prokMSA_id:057577 AY119432 clone AP1-42 prokMSA_id:057579 AY119433 clone AP1-43 prokMSA_id:057576 AY119434 clone AP1-45 prokMSA_id:057575 AY119435 clone AP2-2 prokMSA_id:057574 AY119436 clone AP2-4 prokMSA_id:057573 AY119437 clone AP2-8 prokMSA_id:057572 AY119438 clone AP2-12 prokMSA_id:057570 AY119440 clone AP2-15 prokMSA_id:063348 AY126267 Lactococcus garvieae strain D5 prokMSA_id:086655 AY184238 Lactococcus lactis subsp. lactis prokMSA_id:092946 AY332751 Culex pipiens quinquefasciatus clone AP2-2 prokMSA_id:092348 AY332752 Culex pipiens quinquefasciatus clone AP2-4 prokMSA_id:093080 AY332753 Culex pipiens quinquefasciatus clone AP2-8 prokMSA_id:015347 L32813 Lactococcus garvieae str. YT-3 ATCC 49156 . prokMSA_id:015338 M54920 Lactococcus lactis subsp. lactis str. f2d2. prokMSA_id:015340 M54921 Lactococcus lactis subsp. lactis str. 7962. prokMSA_id:015346 M54922 Lactococcus lactis subsp. cremoris str. 205. prokMSA_id:015341 M55156 Lactococcus lactis subsp. lactis str. DRC-1. prokMSA_id:015342 M58837 Lactococcus lactis subsp. lactis ATCC 19435 . prokMSA_id:015351 X53905 Lactococcus piscium str. fish isolate HR1A-68. prokMSA_id:015350 X54259 Lactococcus plantarum NCDO 1869 . prokMSA_id:015339 X54260 Lactococcus lactis subsp. lactis NCDO 2118. prokMSA_id:015352 X54261 Lactococcus raffinolactis NCDO 617 . prokMSA_id:015349 X54262 Lactococcus garvieae NCDO 2156. prokMSA_id:019852 Y12922 E.seriolicida strain CCUG 33312 2.30.7.21.2 STC.EQUI_SUBGROUP 4 seqs 2.30.7.21.2.001 OTU 1 seq prokMSA_id:015354 AB002515 Streptococcus equi subsp. equi ATCC 33398 . 2.30.7.21.2.002 OTU 1 seq prokMSA_id:015355 AB002516 Streptococcus equi subsp. zooepidemicus str. S 34 ATCC 43079 . 2.30.7.21.2.003 OTU 1 seq prokMSA_id:081475 AB104843 Streptococcus equi subsp. zooepidemicus strain:Tokyo1291 2.30.7.21.2.999 poor quality 1 seq prokMSA_id:015353 X58314 Streptococcus equi subsp. equi NCDO 2493 . 2.30.7.21.3 STC.PYOGENES_SUBGROUP 158 seqs 2.30.7.21.3.002 OTU 1 seq prokMSA_id:022071 AJ131965 Streptococcus sp. strain 2285-97 2.30.7.21.3.004 OTU 1 seq prokMSA_id:022640 AF124350 Streptococcus orisratti 2.30.7.21.3.008 OTU 32 seqs prokMSA_id:015421 AB002483 Streptococcus canis str. STR-T1 ATCC 43496 . prokMSA_id:015422 AB002517 Streptococcus group G streptococcus ATCC 27961. prokMSA_id:015370 AB023575 Streptococcus pyogenes JCM 5674. prokMSA_id:054205 AE004092 Streptococcus pyogenes strain SF370 serotype M1 complete genome prokMSA_id:047803 AE006473 Streptococcus pyogenes M1 GAS strain SF370 section 2 of 167 of the complete genome prokMSA_id:049036 AE006474 Streptococcus pyogenes M1 GAS strain SF370 section 3 of 167 of the complete genome prokMSA_id:048689 AE006479 Streptococcus pyogenes M1 GAS strain SF370 section 8 of 167 of the complete genome prokMSA_id:045642 AE006496 Streptococcus pyogenes M1 GAS strain SF370 section 25 of 167 of the complete genome prokMSA_id:054235 AE006593 Streptococcus pyogenes M1 GAS strain SF370 section 122 of 167 of the complete genome prokMSA_id:046458 AE006615 Streptococcus pyogenes M1 GAS strain SF370 section 144 of 167 of the complete genome prokMSA_id:055428 AE009954 Streptococcus pyogenes strain MGAS8232 section 2 of 173 of the complete genome prokMSA_id:067872 AE009959 Streptococcus pyogenes strain MGAS8232 section 7 of 173 of the complete genome prokMSA_id:067873 AE009976 Streptococcus pyogenes strain MGAS8232 section 24 of 173 of the complete genome prokMSA_id:067874 AE010074 Streptococcus pyogenes strain MGAS8232 section 122 of 173 of the complete genome prokMSA_id:067871 AE010101 Streptococcus pyogenes strain MGAS8232 section 149 of 173 of the complete genome prokMSA_id:063465 AE014136 Streptococcus pyogenes MGAS315 section 1 of 37 of the complete genome prokMSA_id:063464 AE014137 Streptococcus pyogenes MGAS315 section 2 of 37 of the complete genome prokMSA_id:063462 AE014141 Streptococcus pyogenes MGAS315 section 6 of 37 of the complete genome prokMSA_id:063470 AE014162 Streptococcus pyogenes MGAS315 section 27 of 37 of the complete genome prokMSA_id:063463 AE014168 Streptococcus pyogenes MGAS315 section 33 of 37 of the complete genome prokMSA_id:015423 AF076028 Streptococcus pyogenes. prokMSA_id:022346 AJ413203 Streptococcus canis strain NCTC12191 prokMSA_id:028686 AJ413204 Streptococcus canis strain CG5 prokMSA_id:024456 AJ413205 Streptococcus canis Streptococcus canis strain CG40 prokMSA_id:081395 AP005141 Streptococcus pyogenes SSI-1 complete genome section 1/6 prokMSA_id:082331 AP005142 Streptococcus pyogenes SSI-1 complete genome section 2/6 prokMSA_id:082441 AP005146 Streptococcus pyogenes SSI-1 complete genome section 6/6 prokMSA_id:084371 AY273147 Streptococcus pyogenes prokMSA_id:044359 NC_002737 Streptococcus pyogenes complete genome prokMSA_id:061374 NC_003485 Streptococcus pyogenes strain MGAS8232 complete genome prokMSA_id:073813 NC_004070 Streptococcus pyogenes MGAS315 complete genome prokMSA_id:081122 NC_004606 Streptococcus pyogenes SSI-1 complete genome 2.30.7.21.3.009 OTU 4 seqs prokMSA_id:037236 AF336367 Streptococcus ferus prokMSA_id:028805 AJ420196 Streptococcus ferus strain HD3 prokMSA_id:039498 AJ420197 Streptococcus ferus strain 8S1 prokMSA_id:035033 AY058218 Streptococcus ferus strain LMG16520T 2.30.7.21.3.010 OTU 2 seqs prokMSA_id:015368 AF009509 Streptococcus suis str. 92-2742. prokMSA_id:029598 AF357560 mpn-isolate group 12 2.30.7.21.3.013 OTU 2 seqs prokMSA_id:015367 AF009507 Streptococcus suis str. EA1172.91. prokMSA_id:047988 AF371508 clone p-4306-4Wa3 2.30.7.21.3.014 OTU 5 seqs prokMSA_id:015378 AB002526 Streptococcus uberis ATCC 19436 . prokMSA_id:015366 AB002527 Streptococcus uberis ATCC 27958. prokMSA_id:015369 AB023573 Streptococcus uberis JCM 5709. prokMSA_id:015371 AB023576 Streptococcus uberis str. HN1. prokMSA_id:015356 U41048 Streptococcus uberis. 2.30.7.21.3.015 OTU 9 seqs prokMSA_id:015386 AF176100 Streptococcus didelphis str. W95-4849. prokMSA_id:015357 AF176101 Streptococcus didelphis str. W95-108899177. prokMSA_id:015358 AF176102 Streptococcus didelphis str. W95-018899131. prokMSA_id:015359 AF176103 Streptococcus didelphis str. W94-11374-1. prokMSA_id:015360 AF176104 Streptococcus didelphis str. W94-12010. prokMSA_id:015361 AF176105 Streptococcus didelphis str. 95-111064. prokMSA_id:015362 AF176106 Streptococcus didelphis str. W95-2085-1. prokMSA_id:015363 AF176107 Streptococcus didelphis str. 95-3349-1. prokMSA_id:015364 AF176108 Streptococcus didelphis str. W95-3565-7. 2.30.7.21.3.017 OTU 78 seqs prokMSA_id:015372 AB002479 Streptococcus agalactiae ATCC 13813 . prokMSA_id:015383 AB002480 Streptococcus agalactiae ATCC 23956. prokMSA_id:015388 AB002484 Streptococcus dysgalactiae ATCC 27957. prokMSA_id:015384 AB002485 Streptococcus dysgalactiae subsp. dysgalactiae ATCC 43078 . prokMSA_id:015389 AB002486 Streptococcus dysgalactiae str. A1. prokMSA_id:015390 AB002487 Streptococcus dysgalactiae str. A20. prokMSA_id:015391 AB002488 Streptococcus dysgalactiae str. A24. prokMSA_id:015392 AB002489 Streptococcus dysgalactiae str. A25. prokMSA_id:015393 AB002490 Streptococcus dysgalactiae str. A5. prokMSA_id:015394 AB002491 Streptococcus dysgalactiae str. A6. prokMSA_id:015395 AB002492 Streptococcus dysgalactiae str. A7. prokMSA_id:015396 AB002493 Streptococcus dysgalactiae str. L13. prokMSA_id:015397 AB002494 Streptococcus dysgalactiae str. L1. prokMSA_id:015398 AB002495 Streptococcus dysgalactiae str. L21. prokMSA_id:015399 AB002496 Streptococcus dysgalactiae str. L23. prokMSA_id:015400 AB002497 Streptococcus dysgalactiae str. L27. prokMSA_id:015401 AB002498 Streptococcus dysgalactiae str. L2. prokMSA_id:015402 AB002499 Streptococcus dysgalactiae str. L31. prokMSA_id:015403 AB002500 Streptococcus dysgalactiae str. L32. prokMSA_id:015404 AB002501 Streptococcus dysgalactiae str. L33. prokMSA_id:015405 AB002502 Streptococcus dysgalactiae str. L34. prokMSA_id:015406 AB002503 Streptococcus dysgalactiae str. L35. prokMSA_id:015407 AB002504 Streptococcus dysgalactiae str. L36. prokMSA_id:015408 AB002505 Streptococcus dysgalactiae str. L4. prokMSA_id:015409 AB002506 Streptococcus dysgalactiae str. L5. prokMSA_id:015410 AB002507 Streptococcus dysgalactiae str. L7. prokMSA_id:015411 AB002508 Streptococcus dysgalactiae str. L8. prokMSA_id:015412 AB002509 Streptococcus dysgalactiae str. L9. prokMSA_id:015413 AB002510 Streptococcus dysgalactiae str. V24. prokMSA_id:015414 AB002511 Streptococcus dysgalactiae str. V24. prokMSA_id:015415 AB002512 Streptococcus dysgalactiae str. V26. prokMSA_id:015416 AB002513 Streptococcus dysgalactiae str. V36. prokMSA_id:015382 AB002523 Streptococcus porcinus ATCC 43138 . prokMSA_id:015426 AB008926 Streptococcus dysgalactiae subsp. equisimilis NCFB 1356 . prokMSA_id:015374 AB023574 Streptococcus agalactiae JCM 5671. prokMSA_id:055142 AB096755 Streptococcus dysgalactiae subsp. equisimilis strain:ATCC 35666 prokMSA_id:091052 AB102730 Streptococcus dysgalactiae prokMSA_id:082202 AB104839 Streptococcus dysgalactiae subsp. equisimilis strain:BL2719 prokMSA_id:081598 AB104840 Streptococcus dysgalactiae subsp. equisimilis strain:1149 prokMSA_id:082226 AB104841 Streptococcus dysgalactiae subsp. equisimilis strain:1201 prokMSA_id:082327 AB104842 Streptococcus dysgalactiae subsp. equisimilis strain:Fukuoka prokMSA_id:081436 AB104844 Streptococcus dysgalactiae subsp. equisimilis strain:N1434 prokMSA_id:081796 AB104846 Streptococcus dysgalactiae subsp. equisimilis strain:Ichi prokMSA_id:081034 AB104847 Streptococcus dysgalactiae subsp. equisimilis strain: prokMSA_id:081224 AB104848 Streptococcus dysgalactiae subsp. equisimilis strain:A-ka prokMSA_id:081712 AB104849 Streptococcus dysgalactiae subsp. equisimilis strain:A-yo prokMSA_id:081812 AB104850 Streptococcus dysgalactiae subsp. equisimilis strain:A-sa prokMSA_id:059717 AE014191 Streptococcus agalactiae 2603V/R section 1 of 100 of the complete genome prokMSA_id:055265 AE014192 Streptococcus agalactiae 2603V/R section 2 of 100 of the complete genome prokMSA_id:055977 AE014195 Streptococcus agalactiae 2603V/R section 5 of 100 of the complete genome prokMSA_id:059714 AE014198 Streptococcus agalactiae 2603V/R section 8 of 100 of the complete genome prokMSA_id:059713 AE014202 Streptococcus agalactiae 2603V/R section 12 of 100 of the complete genome prokMSA_id:059712 AE014207 Streptococcus agalactiae 2603V/R section 17 of 100 of the complete genome prokMSA_id:059711 AE014210 Streptococcus agalactiae 2603V/R section 20 of 100 of the complete genome prokMSA_id:015373 AF015927 Streptococcus agalactiae ATCC 27956. prokMSA_id:015385 AF015928 Streptococcus dysgalactiae ATCC 27957. prokMSA_id:036800 AF284579 Streptococcus parauberis strain SAP 99 complete prokMSA_id:045172 AF335572 Streptococcus iniae strain ATCC29178 prokMSA_id:033357 AF335573 Streptococcus iniae strain Dan 1 prokMSA_id:033248 AF371509 clone p-4662-2Wa2 prokMSA_id:024233 AF433167 Streptococcus dysgalactiae prokMSA_id:058770 AF459432 Streptococcus agalactiae prokMSA_id:048544 AJ314609 Streptococcus dysgalactiae subsp. equisimilis strain AC-2713 prokMSA_id:048038 AJ314610 Streptococcus dysgalactiae subsp. equisimilis strain AC-2832 prokMSA_id:025514 AJ314611 Streptococcus dysgalactiae subsp. equisimilis strain AC-2074 prokMSA_id:066197 AJ319643 Streptococcus dysgalactiae subsp. equisimilis strain ATCC 35666 prokMSA_id:055700 AJ319644 Streptococcus dysgalactiae subsp. equisimilis strain AC-4436 prokMSA_id:062943 AY121359 Streptococcus dysgalactiae subsp. dysgalactiae strain ATCC 43078 prokMSA_id:055723 AY121360 Streptococcus dysgalactiae subsp. equisimilis strain ATCC 35666 prokMSA_id:062942 AY121361 Streptococcus dysgalactiae subsp. equisimilis strain ATCC 12394 prokMSA_id:062938 AY121362 Streptococcus dysgalactiae subsp. equisimilis strain CIP 55-123 prokMSA_id:075302 AY167955 Swine manure RT-18A prokMSA_id:076372 AY167959 Swine manure RT-20 prokMSA_id:084877 AY260834 Streptococcus iniae isolate s41 prokMSA_id:059530 NC_004116 Streptococcus agalactiae 2603V/R complete genome prokMSA_id:057716 NC_004368 Streptococcus agalactiae NEM316 complete genome prokMSA_id:015365 X89967 Streptococcus parauberis. prokMSA_id:015375 Z22808 Streptococcus agalactiae. 2.30.7.21.3.018 OTU 1 seq prokMSA_id:015387 U87830 clone v6. 2.30.7.21.3.019 OTU 1 seq prokMSA_id:015419 AB002521 Streptococcus pyogenes str. T1 ATCC 12344 . 2.30.7.21.3.999 poor quality 22 seqs prokMSA_id:049559 AF064439 Streptococcus difficile strain prokMSA_id:048192 AF064440 Streptococcus difficile strain prokMSA_id:072003 AF235052 Streptococcus phocae prokMSA_id:032109 AF239716 Streptococcus dysgalactiae subsp. equisimilis prokMSA_id:067671 AF485389 clone G2 prokMSA_id:052261 AH006153 Streptococcus difficilis strain ATCC51487 prokMSA_id:026748 AJ131578 Streptococcus agalactiae 5' end prokMSA_id:021828 AJ131579 Streptococcus agalactiae 3' end prokMSA_id:039776 AY037874 firmicute clone CD1B2 prokMSA_id:057785 AY148430 Streptococcus dysgalactiae subsp. equisimilis prokMSA_id:088420 AY325758 Streptococcus sp. isolate PCR amplicon RL 2125 prokMSA_id:015376 U02908 Streptococcus agalactiae ATCC 13813 . prokMSA_id:015424 U02912 Streptococcus dysgalactiae subsp. dysgalactiae ATCC 43078 . prokMSA_id:015377 U02915 Streptococcus sp. str. 4286. prokMSA_id:015420 U02921 Streptococcus pyogenes ATCC 19615. prokMSA_id:015418 X58315 Streptococcus porcinus NCDO 600 . prokMSA_id:015417 X58316 Streptococcus criae NCDO 2772 . prokMSA_id:015427 X59029 Streptococcus pyogenes. prokMSA_id:015380 X59031 Streptococcus suis. prokMSA_id:015425 X59032 Streptococcus agalactiae NCDO 1348 . prokMSA_id:015381 X59061 Streptococcus canis. prokMSA_id:015379 Y12924 Streptococcus pyogenes str. ATTC 19615. 2.30.7.21.4 STC.HYOINTESTINALIS_SUBGROUP 4 seqs 2.30.7.21.4.001 OTU 3 seqs prokMSA_id:015428 AB002518 Streptococcus hyointestinalis ATCC 49169 . prokMSA_id:040770 AF201898 Streptococcus hyointestinalis prokMSA_id:049960 AF371510 clone p-2682-65A5 2.30.7.21.4.999 poor quality 1 seq prokMSA_id:015429 X58313 Streptococcus hyointestinalis DSM 20770 . 2.30.7.21.5 STC.THORALTENSIS_SUBGROUP 3 seqs 2.30.7.21.5.001 OTU 1 seq prokMSA_id:015430 Y07601 Streptococcus hyovaginalis str. SHV515 DSM 12219 . 2.30.7.21.5.002 OTU 1 seq prokMSA_id:015432 Y09007 Streptococcus thoraltensis str. S69 DSM 12221 . 2.30.7.21.5.999 poor quality 1 seq prokMSA_id:015431 Y18026 Streptococcus plutanimalium LMG 14257. 2.30.7.21.6 STC.SALIVARIUS_SUBGROUP 231 seqs 2.30.7.21.6.004 OTU 1 seq prokMSA_id:019661 AJ241741 microorganism clone Col23 2.30.7.21.6.009 OTU 2 seqs prokMSA_id:027408 AJ420199 Streptococcus macacae strain NCTC11558 prokMSA_id:080258 AY188351 Streptococcus macacae strain ATCC 35911 complete 2.30.7.21.6.014 OTU 1 seq prokMSA_id:043122 AJ420198 Streptococcus criceti strain ATCC19642 2.30.7.21.6.017 OTU 1 seq prokMSA_id:050264 AJ420201 Streptococcus ratti strain ATCC19645 2.30.7.21.6.018 OTU 1 seq prokMSA_id:067814 AF349924 clone 50CR 2.30.7.21.6.021 OTU 4 seqs prokMSA_id:070509 AF439398 Streptococcus sobrinus strain 6715 prokMSA_id:015444 AJ243966 Streptococcus sobrinus NCTC 12279. prokMSA_id:083263 AJ554208 Streptococcus mutans strain CECT 4034 prokMSA_id:080496 AY188349 Streptococcus sobrinus strain ATCC 33478 complete 2.30.7.21.6.022 OTU 1 seq prokMSA_id:015451 Y10868 Streptococcus gallolyticus ACM 3969 . 2.30.7.21.6.024 OTU 110 seqs prokMSA_id:015485 AB002481 Streptococcus bovis ATCC 27960. prokMSA_id:015458 AB002482 Streptococcus bovis ATCC 33317 . prokMSA_id:015486 AB002514 Streptococcus equinus NCTC 9814. prokMSA_id:015456 AB002519 Streptococcus alactolyticus str. 76-84-1 ATCC 43492 . prokMSA_id:015472 AB006119 Streptococcus anginosus str. GTC820. prokMSA_id:015473 AB006120 Streptococcus anginosus str. GTC821. prokMSA_id:015474 AB006121 Streptococcus anginosus str. GTC822. prokMSA_id:057992 AB094186 clone:G-19 prokMSA_id:015439 AF084834 Streptococcus KN3 str. KN3. prokMSA_id:015440 AF084836 Streptococcus TW1 str. TW1. prokMSA_id:015446 AF088900 Streptococcus waiu str. 3/1; NZRCC 20100. prokMSA_id:015479 AF104109 Streptococcus bovis str. JB1. prokMSA_id:015437 AF104114 Streptococcus bovis ATCC 43143. prokMSA_id:015462 AF104678 Streptococcus anginosus ATCC 33397 . prokMSA_id:015463 AF104679 Streptococcus anginosus str. 1012. prokMSA_id:025587 AF135453 Streptococcus bovis prokMSA_id:015464 AF145239 Streptococcus anginosus str. 367. prokMSA_id:015465 AF145240 Streptococcus anginosus str. 1204. prokMSA_id:015466 AF145241 Streptococcus anginosus str. 213. prokMSA_id:015467 AF145242 Streptococcus anginosus str. 21. prokMSA_id:015468 AF145243 Streptococcus anginosus str. 414. prokMSA_id:015469 AF145244 Streptococcus anginosus str. 1093. prokMSA_id:015471 AF145246 Streptococcus anginosus str. 920. prokMSA_id:015445 AF157108 Streptococcus streptococcus R16-B35. prokMSA_id:015484 AF177729 Streptococcus infantarius str. HDP90104; SLB. prokMSA_id:051786 AF201899 Streptococcus alactolyticus prokMSA_id:070173 AF202012 Human oral C23 prokMSA_id:048067 AF202263 Streptococcus bovis prokMSA_id:027019 AF221604 Streptococcus sp. ES11 prokMSA_id:042690 AF298197 Streptococcus sp. LRC 0253 prokMSA_id:046517 AF298198 Streptococcus sp. LRC 0255 prokMSA_id:036638 AF298199 Streptococcus sp. LRC 0476 prokMSA_id:046007 AF306833 Streptococcus anginosus isolate VA4684_00 prokMSA_id:045471 AF306838 Streptococcus anginosus genotype VA8466_00 prokMSA_id:031706 AF323911 Streptococcus gallolyticus complete prokMSA_id:067823 AF349918 clone 32CR complete prokMSA_id:069863 AF349920 clone 39CR complete prokMSA_id:067808 AF349932 Streptococcus sp. CR-314S clone crev-4 prokMSA_id:039559 AF357559 mpn-isolate group 11 prokMSA_id:024384 AF371504 clone p-4-a5 prokMSA_id:041712 AF371505 clone p-2-a5 prokMSA_id:050372 AF371506 clone p-29-a5 prokMSA_id:019466 AF371507 clone p-4289-4Wa3 prokMSA_id:039742 AF396920 Streptococcus bovis strain B315 prokMSA_id:036663 AF396921 Streptococcus bovis strain C14b1 prokMSA_id:046196 AF396922 Streptococcus bovis strain NCFB 2476 prokMSA_id:042918 AF408257 Streptococcus sp. clone KL-94-1-12 prokMSA_id:041340 AF408258 Streptococcus sp. clone KL-86-2-9 prokMSA_id:023153 AF408260 Streptococcus sp. clone KL-48-1-4 prokMSA_id:031326 AF408263 Streptococcus sp. clone KL-27-1-5 prokMSA_id:024015 AF429762 Streptococcus infantarius subsp. infantarius prokMSA_id:038058 AF429763 Streptococcus infantarius subsp. coli prokMSA_id:033716 AF429764 Streptococcus bovis HDP90084 prokMSA_id:071159 AF429765 Streptococcus equinus NCDO1037T complete prokMSA_id:040363 AF432134 Streptococcus sp. oral clone FN042 prokMSA_id:058771 AF459431 Streptococcus macedonicus prokMSA_id:056634 AF459433 Streptococcus salivarius prokMSA_id:061024 AF530377 clone cadhufec57c10 prokMSA_id:027034 AJ241742 Streptococcus gordonii clone Col31 prokMSA_id:030971 AJ297214 Streptococcus luteciae strain NEM 760 prokMSA_id:025148 AJ297215 Streptococcus luteciae strain NEM 782 prokMSA_id:044756 AJ297216 Streptococcus pasteuri strain NEM1202 CIP 105070 prokMSA_id:029347 AJ297217 Streptococcus pasteuri strain NEM1205 CIP 105073 prokMSA_id:021570 AJ297218 Streptococcus luteciae strain NEM1603 prokMSA_id:051368 AJ301607 Streptococcus equinus strain ATCC 9812 prokMSA_id:036122 AJ305257 Streptococcus bovis strain NCTC11436 prokMSA_id:038383 AJ408037 equine intestinal sp. CL02 clone CL02 prokMSA_id:036450 AJ408185 equine intestinal sp. ML39 clone ML39 prokMSA_id:017039 AJ408235 equine intestinal sp. PL28 clone PL28 prokMSA_id:077235 AJ439568 Streptococcus infantarius subsp. infantarius strain 42 prokMSA_id:069377 AJ514236 Streptococcus anginosus isolate MBRG 5.2 prokMSA_id:066577 AY098489 Streptococcus sp. AK68 prokMSA_id:080129 AY188352 Streptococcus salivarius strain ATCC 7073 complete prokMSA_id:080065 AY188353 Streptococcus vestibularis strain ATCC 49124 complete prokMSA_id:080926 AY188354 Streptococcus thermophilus strain ATCC 19258 complete prokMSA_id:089376 AY324610 Streptococcus bovis strain MPR1 prokMSA_id:090414 AY324611 Streptococcus bovis strain MPR2 prokMSA_id:088822 AY324612 Streptococcus bovis strain MPR4 prokMSA_id:089081 AY324613 Streptococcus bovis strain MPR5 prokMSA_id:088296 AY325738 Streptococcus sp. isolate PCR amplicon RL 1495 prokMSA_id:089290 AY327522 Streptococcus bovis RD09 prokMSA_id:088769 AY327523 Streptococcus bovis RD11 prokMSA_id:092328 AY343114 clone REC1M_9 prokMSA_id:092079 AY343115 clone REC1M_59 prokMSA_id:092527 AY343116 clone REC1M_57 prokMSA_id:092757 AY343117 clone REC1M_72 prokMSA_id:092949 AY343118 clone REC1M_51 prokMSA_id:092873 AY343119 clone REC1M_56 prokMSA_id:093075 AY343120 clone REC1M_90 prokMSA_id:092762 AY343121 clone REC1M_58 prokMSA_id:092851 AY343122 clone REC1M_91 prokMSA_id:092352 AY343170 clone REC1M_68 prokMSA_id:092613 AY343188 clone REC6M_32 prokMSA_id:092590 AY343189 clone REC6M_35 prokMSA_id:092810 AY347306 Streptococcus bovis strain Sb R1 prokMSA_id:092772 AY360353 Streptococcus anginosus prokMSA_id:098175 AY371263 clone Dpcom124 prokMSA_id:098534 AY371265 clone Dpcom125 prokMSA_id:094717 AY373328 clone Dpcom134 prokMSA_id:094532 AY386237 clone Dpcom147 prokMSA_id:097642 AY388441 clone Adhuleft42 prokMSA_id:015478 M58835 Streptococcus bovis ATCC 33317 . prokMSA_id:015459 M58839 Streptococcus salivarius str. C699 ATCC 13419. prokMSA_id:015434 X68418 Streptococcus thermophilus DSM 20617 . prokMSA_id:015488 X78825 Streptococcus sp. str. 69130. prokMSA_id:015476 X78826 Streptococcus sp. str. MGH. prokMSA_id:015461 X81023 Streptococcus milleri str. SJMC. prokMSA_id:015443 Y10869 Streptococcus caprinus ACM 3968. prokMSA_id:036385 Z73453 species isolate Boom-3m-03 prokMSA_id:015436 Z94012 Streptococcus macedonicus str. LAB617 ACA-DC 206 . 2.30.7.21.6.025 OTU 1 seq prokMSA_id:015483 AF084832 Streptococcus KN1 str. KN1. 2.30.7.21.6.026 OTU 1 seq prokMSA_id:071312 AF253361 human infant N108E 2.30.7.21.6.027 OTU 2 seqs prokMSA_id:072603 AJ420200 Streptococcus downei strain NCTC11391 prokMSA_id:080847 AY188350 Streptococcus downei strain ATCC 33748 complete 2.30.7.21.6.999 poor quality 106 seqs prokMSA_id:018968 AB028324 oral SH3 prokMSA_id:026922 AB028325 oral SH4 prokMSA_id:018604 AB028326 oral SH5 prokMSA_id:025742 AB028337 oral SH16 prokMSA_id:020139 AB028347 oral SH54 prokMSA_id:037351 AB028361 oral SH74 prokMSA_id:040987 AB028419 oral RP55-10 prokMSA_id:062125 AB064834 Streptococcus sp. clone:NB2A4 prokMSA_id:062120 AB064838 Streptococcus sp. clone:NB4D2 prokMSA_id:062122 AB064841 Streptococcus sp. clone:NO2-5 prokMSA_id:062121 AB064842 Streptococcus sp. clone:NO22 prokMSA_id:062119 AB064843 Streptococcus sp. clone:NBS1C5 prokMSA_id:062043 AB064930 Streptococcus sp. CB1 prokMSA_id:068924 AF064441 Streptococcus difficile ; tRNA-Ala complete ; and 23S prokMSA_id:026470 AF070467 Mixed culture ruminal PAD294 prokMSA_id:047973 AF082730 Streptococcus bovis strain FM prokMSA_id:070562 AF082731 Streptococcus bovis strain FM prokMSA_id:015438 AF084833 Streptococcus KN2 str. KN2. prokMSA_id:026464 AF095537 clone Pz406 prokMSA_id:046849 AF095550 clone Pz504 prokMSA_id:038627 AF095557 clone Pz525 prokMSA_id:015480 AF104110 Streptococcus bovis str. 26. prokMSA_id:015481 AF104111 Streptococcus bovis str. 21-09-6c. prokMSA_id:015482 AF104112 Streptococcus bovis str. 45s1. prokMSA_id:040631 AF104113 Streptococcus bovis strain K27FF4 prokMSA_id:032771 AF104115 Streptococcus bovis strain ATCC43144 prokMSA_id:046454 AF104116 Streptococcus equinus strain ATCC9812 prokMSA_id:015470 AF145245 Streptococcus anginosus str. 1007. prokMSA_id:049715 AF169354 Streptococcus anginosus strain VAMC5302 prokMSA_id:071099 AF169355 Streptococcus anginosus strain VAMC5219 prokMSA_id:030685 AF169358 Streptococcus anginosus strain VAMC3075 prokMSA_id:022939 AF218216 clone LSII prokMSA_id:031544 AF218217 clone LSIII prokMSA_id:028462 AF253330 human infant D6B prokMSA_id:070495 AF253334 human infant D13J prokMSA_id:073287 AF253343 human infant D29A prokMSA_id:073216 AF253356 human infant N13B4 prokMSA_id:071283 AF253378 human infant L13dE prokMSA_id:071557 AF253388 human infant L4b prokMSA_id:043865 AF261777 swine feces FOTU2 prokMSA_id:050518 AF261797 manure pit P37 prokMSA_id:026751 AF261815 manure pit P62 prokMSA_id:036264 AF284561 Hydrogen production community clone HPB-G1-14 prokMSA_id:035586 AF313406 Streptococcus sp. VAMC blood 3395 prokMSA_id:038842 AF313407 Streptococcus sp. 00 UCUL 4487 prokMSA_id:021649 AF313408 Streptococcus sp. VAMC 3076 prokMSA_id:043401 AF353718 Streptococcus sp. VAMC-2818 prokMSA_id:068113 AF365622 clone BT60MF7BG10 prokMSA_id:056541 AF393762 Streptococcus mitis isolate 4Wa prokMSA_id:032238 AF445228 Swine fecal FPC75 prokMSA_id:028530 AF445229 Swine fecal FPC69 prokMSA_id:031493 AF445230 Swine fecal FPC72 prokMSA_id:024911 AF445231 Swine fecal FPC56 prokMSA_id:073530 AF481817 clone N108G prokMSA_id:074405 AH006359 Streptococcus bovis strain FM prokMSA_id:031918 AJ241740 Streptococcus intestinalis clone Col17 prokMSA_id:048259 AJ241743 microorganism clone Col54 prokMSA_id:043087 AJ241750 Streptococcus intestinalis clone Col111 prokMSA_id:043735 AJ241751 microorganism clone Col112 prokMSA_id:035569 AJ241754 Lactobacillus amylovorus clone *Cow3 prokMSA_id:035888 AJ241757 Streptococcus intestinalis clone *Cow7 prokMSA_id:034984 AJ241760 Streptococcus gallolyticus clone *Cow12 prokMSA_id:051588 AJ241762 microorganism clone *Cow16 prokMSA_id:018121 AJ241771 Streptococcus intestinalis clone Cow26 prokMSA_id:037591 AJ241778 Streptococcus gallolyticus clone Cow37 prokMSA_id:038052 AJ270185 symbiont of Hodotermes mossambicus Hm4 prokMSA_id:037422 AJ298649 Actinomyces hyovaginalis strain HJ47-BO3030.4 prokMSA_id:016505 AJ405026 A16-K1 clone A16-K1 prokMSA_id:045213 AJ421813 clone CFB-6MS-8 prokMSA_id:033142 AJ421815 clone CFB-6MS-7 prokMSA_id:039830 AJ421823 clone CFB-6MS-6 prokMSA_id:070946 AJ514242 Streptococcus salivarius isolate MBRG 5.8 prokMSA_id:055724 AJ514247 Lactobacillus casei isolate MBRG 5.9 prokMSA_id:097950 AJ555129 Streptococcus anginosus prokMSA_id:092945 AJ580673 clone NN325-50 prokMSA_id:083847 AY184231 Streptococcus bovis strain 25124 prokMSA_id:084503 AY184233 Streptococcus bovis strain A12203 prokMSA_id:084690 AY184235 Streptococcus bovis strain A57206 prokMSA_id:086011 AY184236 Streptococcus bovis strain A57103 prokMSA_id:088586 AY324631 Streptococcus alactolyticus strain ONK4 prokMSA_id:088358 AY324632 Streptococcus alactolyticus strain PKI1 prokMSA_id:096095 AY388404 clone Adhuright13 prokMSA_id:098474 AY394639 Streptococcus sp. clone N10-17 prokMSA_id:015490 U02909 Streptococcus anginosus ATCC 12395 . prokMSA_id:015453 U02914 Streptococcus equi subsp. equi NCTC 9682 . prokMSA_id:015433 U02917 Streptococcus milleri str. 4221. prokMSA_id:015449 U02919 Streptococcus mutans ATCC 25175 . prokMSA_id:015492 U02923 Streptococcus salivarius ATCC 7073 . prokMSA_id:022647 U96621 Streptococcus waiu prokMSA_id:015447 X58302 Streptococcus macacae NCTC 11558 . prokMSA_id:015452 X58303 Streptococcus mutans NCTC 10449 . prokMSA_id:015491 X58304 Streptococcus ratti NCDO 2723 . prokMSA_id:015477 X58305 Streptococcus criceti NCDO 2720 . prokMSA_id:015454 X58306 Streptococcus downei NCTC 11391 . prokMSA_id:015487 X58307 Streptococcus sobrinus DSM 20742 . prokMSA_id:015455 X58309 Streptococcus anginosus NCTC 10713 . prokMSA_id:015493 X58317 Streptococcus bovis NCDO 597 . prokMSA_id:015450 X58318 Streptococcus equinus NCDO 1037 . prokMSA_id:015489 X58319 Streptococcus alactolyticus NCDO 1091 . prokMSA_id:015457 X58320 Streptococcus salivarius NCDO 1779 . prokMSA_id:015475 X58321 Streptococcus vestibularis NCTC 12166 . prokMSA_id:015448 X59028 Streptococcus thermophilus NCDO 573 . prokMSA_id:015460 X84485 unnamed organism. prokMSA_id:015441 X94337 Streptococcus gallolyticus ACM 3611. prokMSA_id:015442 Y10867 Streptococcus caprinus ACM 3970. prokMSA_id:015435 Z69038 Streptococcus anginosus ATCC 33397 . 2.30.7.21.7 STC.CONSTELLATUS_SUBGROUP 28 seqs 2.30.7.21.7.001 OTU 1 seq prokMSA_id:059566 AY134901 Streptococcus sp. oral clone FX003 2.30.7.21.7.002 OTU 14 seqs prokMSA_id:050448 AF104671 Streptococcus intermedius strain ATCC27335 prokMSA_id:015500 AF104672 Streptococcus intermedius str. 125. prokMSA_id:015501 AF104673 Streptococcus intermedius str. 488. prokMSA_id:015502 AF104674 Streptococcus intermedius str. 535. prokMSA_id:015503 AF104675 Streptococcus intermedius str. 539. prokMSA_id:015504 AF104676 Streptococcus constellatus ATCC 27823 . prokMSA_id:015505 AF104677 Streptococcus constellatus str. 206. prokMSA_id:063991 AJ491836 Streptococcus intermedius strain B33 prokMSA_id:087920 AY277937 Streptococcus constellatus strain 1 prokMSA_id:087550 AY277938 Streptococcus constellatus strain 857 prokMSA_id:087435 AY277939 Streptococcus constellatus strain 15 prokMSA_id:087466 AY277940 Streptococcus constellatus strain 1192 prokMSA_id:087453 AY277941 Streptococcus constellatus strain 919 prokMSA_id:087569 AY277942 Streptococcus constellatus strain 1259 2.30.7.21.7.003 OTU 1 seq prokMSA_id:089777 AY307989 clone UB684 2.30.7.21.7.999 poor quality 12 seqs prokMSA_id:045656 AF169353 Streptococcus constellatus strain VAMC5464 prokMSA_id:048311 AF169356 Streptococcus constellatus strain VAMC3868 prokMSA_id:048242 AF169357 Streptococcus intermedius prokMSA_id:074104 AJ514251 Streptococcus constellatus isolate MBRG 5.1 prokMSA_id:015499 NONE Streptococcus constellatus ATCC 27823 . prokMSA_id:015497 U02916 Streptococcus anginosus str. SK54 ATCC 27335 . prokMSA_id:015507 U02924 Streptococcus sanguinis ATCC 10556 . prokMSA_id:015498 X58310 Streptococcus constellatus. prokMSA_id:015495 X58311 Streptococcus anginosus str. SK54 NCTC 11324. prokMSA_id:015496 Z69037 Streptococcus milleri str. 372. prokMSA_id:015494 Z69040 Streptococcus anginosus str. SK54 ATCC 27335 . prokMSA_id:015506 Z69041 Streptococcus constellatus ATCC 27823 . 2.30.7.21.8 STC.SUIS_SUBGROUP 81 seqs 2.30.7.21.8.002 OTU 1 seq prokMSA_id:021888 AB062811 clone:BCf2-19 2.30.7.21.8.003 OTU 1 seq prokMSA_id:026896 Y17358 Streptococcus sp. S369-98-1 2.30.7.21.8.005 OTU 61 seqs prokMSA_id:015541 AB002525 Streptococcus suis str. S735 ATCC 43765 . prokMSA_id:051591 AB071336 Streptococcus suis cds strain:DAT1 prokMSA_id:049657 AB071337 Streptococcus suis cds strain:DAT2 prokMSA_id:036314 AB071338 Streptococcus suis cds strain:NIAH11318 prokMSA_id:024173 AB071339 Streptococcus suis cds strain:193 prokMSA_id:034509 AB071340 Streptococcus suis cds strain:194 prokMSA_id:023271 AB071341 Streptococcus suis cds strain:203 prokMSA_id:033693 AB071342 Streptococcus suis cds strain:209 prokMSA_id:046648 AB071343 Streptococcus suis cds strain:210 prokMSA_id:018069 AB071344 Streptococcus suis cds strain:211 prokMSA_id:020455 AB071345 Streptococcus suis cds strain:220 prokMSA_id:019499 AB071346 Streptococcus suis cds strain:222 prokMSA_id:029146 AB071347 Streptococcus suis cds strain:226 prokMSA_id:034124 AB071348 Streptococcus suis cds strain:228 prokMSA_id:027714 AB071349 Streptococcus suis cds strain:235 prokMSA_id:029179 AB071350 Streptococcus suis cds strain:243 prokMSA_id:015511 AF009475 Streptococcus suis str. 5428. prokMSA_id:051021 AF009476 Streptococcus suis complete prokMSA_id:015508 AF009477 Streptococcus suis str. S735 NCTC 10234 . prokMSA_id:015512 AF009478 Streptococcus suis str. 4961. prokMSA_id:015513 AF009479 Streptococcus suis str. 6407. prokMSA_id:015542 AF009480 Streptococcus suis str. 11538. prokMSA_id:015543 AF009481 Streptococcus suis str. 2524. prokMSA_id:020126 AF009482 Streptococcus suis complete prokMSA_id:015514 AF009483 Streptococcus suis str. 14636. prokMSA_id:015515 AF009484 Streptococcus suis str. 22083. prokMSA_id:015516 AF009485 Streptococcus suis str. 4417. prokMSA_id:015517 AF009486 Streptococcus suis str. 12814. prokMSA_id:015518 AF009487 Streptococcus suis str. 88308. prokMSA_id:015544 AF009488 Streptococcus suis str. 10581. prokMSA_id:015519 AF009489 Streptococcus suis str. 13730. prokMSA_id:015520 AF009490 Streptococcus suis NCTC 1046. prokMSA_id:015521 AF009491 Streptococcus suis str. 2726. prokMSA_id:015522 AF009492 Streptococcus suis str. 93A. prokMSA_id:015523 AF009493 Streptococcus suis str. NT77. prokMSA_id:015524 AF009494 Streptococcus suis str. 42A. prokMSA_id:015545 AF009495 Streptococcus suis str. 86-5192. prokMSA_id:015525 AF009496 Streptococcus suis str. 14A. prokMSA_id:029248 AF009497 Streptococcus suis complete prokMSA_id:015529 AF009498 Streptococcus suis str. 89-2479. prokMSA_id:015530 AF009499 Streptococcus suis str. 88-5299A. prokMSA_id:015531 AF009500 Streptococcus suis str. 89-3576. prokMSA_id:015546 AF009501 Streptococcus suis str. 89-4109-1. prokMSA_id:015532 AF009502 Streptococcus suis str. 89-5259. prokMSA_id:015533 AF009503 Streptococcus suis str. 89-590. prokMSA_id:015534 AF009504 Streptococcus suis str. 92-1191. prokMSA_id:015547 AF009505 Streptococcus suis str. 92-1400. prokMSA_id:015535 AF009506 Streptococcus suis str. 92-4172. prokMSA_id:015526 AF014814 Streptococcus suis str. St. 22083. prokMSA_id:015527 AF014815 Streptococcus suis str. 86-5192. prokMSA_id:015528 AF014816 Streptococcus suis str. 88-1861. prokMSA_id:015536 AF014817 Streptococcus suis str. 88-5299A. prokMSA_id:015537 AF014818 Streptococcus suis str. 89-3576-3. prokMSA_id:015538 AF014819 Streptococcus suis str. 89-4109-1. prokMSA_id:015539 AF014820 Streptococcus suis str. 89-5259. prokMSA_id:035624 AF284578 Streptococcus suis strain SAP 77 complete prokMSA_id:051661 AF290487 sheep mite Welshpool 44 prokMSA_id:031821 AF371511 clone p-4747-2Wb2 prokMSA_id:036287 AF429766 Streptococcus bovis NCDO2127 prokMSA_id:078372 AY173079 Streptococcus bovis strain HJ50 prokMSA_id:015510 Z94011 clone T44. 2.30.7.21.8.006 OTU 1 seq prokMSA_id:063461 AJ307888 Streptococcus gallinaceus strain CCUG42692T 2.30.7.21.8.007 OTU 1 seq prokMSA_id:068431 AY082391 Streptococcus suis isolate EDCC5220 2.30.7.21.8.008 OTU 1 seq prokMSA_id:015509 Z94010 clone T46. 2.30.7.21.8.009 OTU 1 seq prokMSA_id:015540 AF009508 Streptococcus suis str. EA1832.92. 2.30.7.21.8.010 OTU 1 seq prokMSA_id:070091 AF227836 str. 37236 2.30.7.21.8.011 OTU 1 seq prokMSA_id:075833 AY164389 clone BLIB-94 2.30.7.21.8.012 OTU 2 seqs prokMSA_id:087661 AY232832 Streptococcus minor strain LMG 21734 prokMSA_id:086780 AY232833 Streptococcus minor strain LMG 21735 2.30.7.21.8.999 poor quality 10 seqs prokMSA_id:032388 AF244376 Nostocoida limicola I strain Ben203 prokMSA_id:048385 AF244377 Nostocoida limicola I strain Ben204 prokMSA_id:064592 AF467380 actinomycete clone 2394 prokMSA_id:070667 AF544912 Gram-positive clone 1-6-3 prokMSA_id:074394 AJ404522 Streptococcus SS1 prokMSA_id:029232 AJ419035 clone kl080 prokMSA_id:062602 AJ504516 isolate P1CN55 prokMSA_id:062598 AJ504521 isolate P1CN60 prokMSA_id:015549 X58301 Streptococcus acidominimus. prokMSA_id:015548 X59030 Streptococcus dysgalactiae. 2.30.7.21.9 STC.PNEUMONIAE_SUBGROUP 285 seqs 2.30.7.21.9.008 OTU 18 seqs prokMSA_id:057768 AE014854 Streptococcus mutans UA159 section 2 of 185 of the complete genome prokMSA_id:057767 AE014869 Streptococcus mutans UA159 section 17 of 185 of the complete genome prokMSA_id:057766 AE015003 Streptococcus mutans UA159 section 151 of 185 of the complete genome prokMSA_id:057765 AE015006 Streptococcus mutans UA159 section 154 of 185 of the complete genome prokMSA_id:057764 AE015023 Streptococcus mutans UA159 section 171 of 185 of the complete genome prokMSA_id:081367 AF077832 Streptococcus mutans strain LM7 complete prokMSA_id:081886 AF077833 Streptococcus mutans strain AF199 complete prokMSA_id:082180 AF077834 Streptococcus mutans strain 669 complete prokMSA_id:081591 AF077835 Streptococcus mutans strain UA96 complete prokMSA_id:082224 AF077836 Streptococcus mutans strain UA140 complete prokMSA_id:069287 AF139599 Streptococcus mutans strain UA140 ; tRNA-Ala complete ; 23S complete ; and 5S prokMSA_id:055433 AF139600 Streptococcus mutans strain UA96 ; tRNA-Ala complete ; 23S complete ; and 5S prokMSA_id:072641 AF139601 Streptococcus mutans strain LM7 ; tRNA-Ala complete ; 23S complete ; and 5S prokMSA_id:069297 AF139602 Streptococcus mutans strain AF199 ; tRNA-Ala complete ; 23S complete ; and 5S prokMSA_id:072123 AF139603 Streptococcus mutans strain 669 ; tRNA-Ala complete ; 23S complete ; and 5S prokMSA_id:051371 AF202013 Human oral C29 prokMSA_id:015565 AJ243965 Streptococcus mutans NCTC 10449 . prokMSA_id:080416 AY188348 Streptococcus mutans strain ATCC 25175 complete 2.30.7.21.9.010 OTU 160 seqs prokMSA_id:015576 AB002520 Streptococcus mitis str. SK 51 NCTC 3165. prokMSA_id:015573 AB002522 Streptococcus pneumoniae MAFF 911410. prokMSA_id:038234 AB002524 Streptococcus sanguis strain ATCC 10556 prokMSA_id:023968 AB006124 Streptococcus parasanguis strain GIFU7994 prokMSA_id:015556 AB006125 Streptococcus parasanguis GIFU 8099. prokMSA_id:025267 AB006126 Streptococcus parasanguis strain GIFU8290 prokMSA_id:015557 AB006127 Streptococcus parasanguis GIFU 8496. prokMSA_id:015567 AB008313 Streptococcus cristatus str. CR311 NCTC 12479 . prokMSA_id:015551 AB008315 Streptococcus infantis str. O-122 JCM 10157 . prokMSA_id:042006 AB038371 Streptococcus sp. PSH2 prokMSA_id:045312 AE008386 Streptococcus pneumoniae R6 section 2 of 184 of the complete genome prokMSA_id:048329 AE008537 Streptococcus pneumoniae R6 section 153 of 184 of the complete genome prokMSA_id:047428 AE008546 Streptococcus pneumoniae R6 section 162 of 184 of the complete genome prokMSA_id:018951 AE008552 Streptococcus pneumoniae R6 section 168 of 184 of the complete genome prokMSA_id:015569 AF003928 Streptococcus sanguinis ATCC 10556 . prokMSA_id:015568 AF003929 Streptococcus mitis ATCC 49456 . prokMSA_id:015572 AF003930 Streptococcus pneumoniae ATCC 33400 . prokMSA_id:015563 AF003931 Streptococcus gordonii str. SK 3 ATCC 10558 . prokMSA_id:015554 AF003932 Streptococcus oralis str. PB 182 ATCC 35037 . prokMSA_id:015555 AF003933 Streptococcus parasanguinis ATCC 15912. prokMSA_id:015574 AF076029 Streptococcus pneumoniae. prokMSA_id:015566 AF076036 Streptococcus viridans. prokMSA_id:042170 AF184974 Streptococcus australis prokMSA_id:036369 AF202014 Human oral AC24 prokMSA_id:028346 AF202015 Human oral AC25 prokMSA_id:033551 AF202017 human oral A26 prokMSA_id:038773 AF202019 Human oral AC31 prokMSA_id:070812 AF202020 human oral A28 prokMSA_id:046612 AF217846 Streptococcus pneumoniae NCTC12140 prokMSA_id:025813 AF217847 Streptococcus pneumoniae NCTC12495 prokMSA_id:042352 AF217848 Streptococcus pneumoniae A32 prokMSA_id:016501 AF217849 Streptococcus pneumoniae A34 prokMSA_id:048558 AF217850 Streptococcus pneumoniae B9 prokMSA_id:047551 AF217851 Streptococcus pneumoniae J94-106 prokMSA_id:047472 AF217852 Streptococcus pneumoniae J94-37 prokMSA_id:038323 AF217853 Streptococcus pneumoniae J94-49 prokMSA_id:039284 AF217854 Streptococcus pneumoniae J94-55 prokMSA_id:046725 AF217855 Streptococcus pneumoniae J94-63 prokMSA_id:054830 AF217856 Streptococcus pneumoniae N12 prokMSA_id:017033 AF217857 Streptococcus pneumoniae N6 prokMSA_id:029788 AF217858 Streptococcus pneumoniae CH90-43 prokMSA_id:046256 AF217859 Streptococcus pneumoniae RUS106 prokMSA_id:019798 AF217860 Streptococcus pneumoniae RUS6 prokMSA_id:038911 AF217861 Streptococcus pneumoniae RUS95 prokMSA_id:019774 AF217862 Streptococcus pneumoniae SN22 prokMSA_id:021131 AF217863 Streptococcus pneumoniae SN111 prokMSA_id:031347 AF217864 Streptococcus pneumoniae A30 prokMSA_id:048998 AF217865 Streptococcus pneumoniae A33 prokMSA_id:036006 AF217866 Streptococcus pneumoniae B5 prokMSA_id:026707 AF316591 Streptococcus sp. 2061A prokMSA_id:070487 AF316592 Streptococcus sp. 4093B prokMSA_id:072273 AF316593 Streptococcus sp. 2056B prokMSA_id:041889 AF316594 Streptococcus sp. 3097C prokMSA_id:039626 AF316595 Streptococcus sp. 3170A prokMSA_id:038886 AF316596 Streptococcus sp. 3192A prokMSA_id:073592 AF385523 Streptococcus sp. oral strain H3-M2 prokMSA_id:073545 AF385525 Streptococcus sp. oral strain T1-E5 prokMSA_id:072990 AF385526 Streptococcus sp. oral strain T4-E3 prokMSA_id:050550 AF385545 Streptococcus sp. oral clone AY020 prokMSA_id:051275 AF385550 Streptococcus sp. oral clone BE024 prokMSA_id:071395 AF385574 Streptococcus sp. oral clone EK048 prokMSA_id:040273 AF422598 clone t024 prokMSA_id:070877 AF432131 Streptococcus sp. oral clone DN025 prokMSA_id:070803 AF432132 Streptococcus sp. oral clone DP009 prokMSA_id:028293 AF432135 Streptococcus sp. oral clone FN051 prokMSA_id:025259 AF432136 Streptococcus sp. oral clone FO042 prokMSA_id:047073 AF432137 Streptococcus sp. oral clone FP015 prokMSA_id:032537 AF432139 Streptococcus sp. oral clone FP064 prokMSA_id:071759 AF432855 Streptococcus sinensis strain HKU5 prokMSA_id:035049 AF432856 Streptococcus sinensis strain HKU4 prokMSA_id:056154 AF432857 Streptococcus sinensis strain HKU6 prokMSA_id:039180 AF469390 clone 33-PA109B99 prokMSA_id:026554 AF479579 Streptococcus sp. NJ9704 prokMSA_id:037656 AF479580 Streptococcus mitis prokMSA_id:055901 AF481230 Streptococcus sp. oral clone MCE7_144 E1 prokMSA_id:062977 AF526931 Streptococcus sp. clone T10-23 rrn prokMSA_id:058297 AF543281 Streptococcus sanguinis strain ChDC B203 prokMSA_id:058289 AF543289 Streptococcus sp. ChDC OS37 prokMSA_id:058288 AF543290 Streptococcus sanguinis strain ChDC OS38 prokMSA_id:058287 AF543291 Streptococcus mitis prokMSA_id:058281 AF543299 Streptococcus parasanguinis prokMSA_id:042298 AJ001246 Streptococcus pneumoniae 5' end strain NCTC 7465 T prokMSA_id:025300 AJ001247 Streptococcus pneumoniae 3' end strain NCTC 7465 T prokMSA_id:035120 AJ001248 Streptococcus pneumoniae 5' end strain NCTC 7466 prokMSA_id:050685 AJ001249 Streptococcus pneumoniae 3' end strain NCTC 7466 prokMSA_id:031864 AJ001250 Streptococcus pneumoniae 5' end strain NCTC 7978 prokMSA_id:030269 AJ001251 Streptococcus pneumoniae 3' end strain NCTC 7978 prokMSA_id:041742 AJ295848 Streptococcus mitis strain 127R prokMSA_id:046365 AJ295853 Streptococcus mitis strain 209 prokMSA_id:036023 AJ427479 Streptococcus gordonii strain DL1 prokMSA_id:056420 AJ514235 Streptococcus mitis isolate MBRG 5.7 prokMSA_id:073502 AJ514237 Streptococcus gordonii isolate MBRG 5.6 prokMSA_id:069700 AJ514250 Streptococcus sp. isolate MBRG 5.4 prokMSA_id:094837 AJ583201 Firmicute clone S15B-MN30 prokMSA_id:094436 AJ583202 Firmicute clone S15B-MN51 prokMSA_id:028885 AY005040 Streptococcus sp. oral strain 7A prokMSA_id:073251 AY005041 Streptococcus sp. oral strain H6 prokMSA_id:069773 AY005042 Streptococcus sp. oral clone BW009 prokMSA_id:071055 AY005043 Streptococcus sp. oral clone BM035 prokMSA_id:036398 AY005044 Streptococcus sp. oral clone CH016 prokMSA_id:071752 AY005045 Streptococcus mitis bv2 prokMSA_id:027308 AY005046 Streptococcus sp. oral clone AA007 prokMSA_id:053864 AY005047 Streptococcus sp. oral strain B5SC prokMSA_id:031500 AY049738 Streptococcus sp. VA1051_00 prokMSA_id:017851 AY053482 AT425_EubB10 prokMSA_id:066308 AY099095 Streptococcus oligefermentans prokMSA_id:059561 AY134908 Streptococcus sp. oral strain 12F prokMSA_id:059559 AY134909 Streptococcus sp. oral clone AG008 prokMSA_id:055599 AY144448 Streptococcus sp. 170702P1 prokMSA_id:076893 AY154523 earthworm intestine clone ew60 prokMSA_id:079217 AY187315 clone csbio160322 prokMSA_id:080267 AY188347 Streptococcus cristatus strain ATCC 51100 complete prokMSA_id:078675 AY189634 Streptococcus sp. clone EarCan107 prokMSA_id:078559 AY189635 low G+C Gram-positive clone EarCan108 prokMSA_id:079066 AY189639 Streptococcus sp. clone EarCan112 prokMSA_id:078858 AY189641 low G+C Gram-positive clone EarCan114 prokMSA_id:084858 AY207051 Streptococcus sp. oral clone P2PA_41 P2 prokMSA_id:083689 AY207062 Streptococcus sp. oral clone P4PA_13 P3 prokMSA_id:082688 AY207064 Streptococcus sp. oral clone P4PA_30 P4 prokMSA_id:082062 AY211388 Streptococcus sp. isolate PCR amplicon VA13408_01 prokMSA_id:082160 AY211389 Streptococcus sp. isolate PCR amplicon VA3296_02 prokMSA_id:081302 AY216449 clone KM46 prokMSA_id:090372 AY239613 Streptococcus sp. prokMSA_id:086104 AY256519 Streptococcus sp. prokMSA_id:087053 AY278609 Streptococcus genomosp. C8 prokMSA_id:087938 AY278629 Streptococcus genomosp. C1 prokMSA_id:086998 AY278630 Streptococcus genomosp. C2 prokMSA_id:087297 AY278631 Streptococcus genomosp. C3 prokMSA_id:086805 AY278632 Streptococcus genomosp. C4 prokMSA_id:087477 AY278633 Streptococcus genomosp. C5 prokMSA_id:087336 AY278634 Streptococcus genomosp. C6 prokMSA_id:087713 AY278635 Streptococcus genomosp. C7 prokMSA_id:087667 AY279215 Streptococcus gordonii strain 2017-78 prokMSA_id:088205 AY281076 Streptococcus mitis ATCC 15914 prokMSA_id:088146 AY281077 Streptococcus mitis ATCC 6249 prokMSA_id:089241 AY281078 Streptococcus mitis ATCC 903 prokMSA_id:089930 AY281079 Streptococcus oralis ATCC 9811 prokMSA_id:090116 AY281080 Streptococcus oralis ATCC 700233 prokMSA_id:089429 AY281081 Streptococcus pneumoniae ATCC 700669 prokMSA_id:088719 AY281082 Streptococcus pneumoniae ATCC 49619 prokMSA_id:090442 AY281083 Streptococcus pneumoniae ATCC BAA-334 prokMSA_id:088494 AY281084 Streptococcus pneumoniae ATCC 6303 prokMSA_id:090432 AY281085 Streptococcus sanguinis ATCC 29667 prokMSA_id:088323 AY281086 Streptococcus sanguinis ATCC 49296 prokMSA_id:090242 AY281087 Streptococcus parasanguinis ATCC 15909 prokMSA_id:089007 AY281088 Streptococcus gordonii ATCC 12396 prokMSA_id:089814 AY281089 Streptococcus gordonii ATCC 33399 prokMSA_id:090588 AY281090 Streptococcus cristatus ATCC 49999 prokMSA_id:089540 AY325745 Streptococcus sp. isolate PCR amplicon RL 1750 prokMSA_id:088873 AY325748 Streptococcus sp. isolate PCR amplicon RL 1836 prokMSA_id:092981 AY349413 Streptococcus sp. oral clone GK051 prokMSA_id:092535 AY349414 Streptococcus sp. oral clone GM006 prokMSA_id:093026 AY360354 Streptococcus mitis prokMSA_id:015552 D38482 Streptococcus mitis NCTC 12261 . prokMSA_id:015561 D38483 Streptococcus gordonii str. SK 3 NCTC 7865 . prokMSA_id:053325 NC_003028 Streptococcus pneumoniae complete genome prokMSA_id:052668 NC_003098 Streptococcus pneumoniae R6 complete genome prokMSA_id:015562 Z22807 Streptococcus pneumoniae. prokMSA_id:035623 Z73441 species isolate Boom-3m-07 prokMSA_id:028257 Z73454 species isolate Boom-3m-04 2.30.7.21.9.011 OTU 1 seq prokMSA_id:055342 AJ409287 Streptococcus entericus strain CECT 5353 2.30.7.21.9.012 OTU 1 seq prokMSA_id:015560 AB008314 Streptococcus peroris str. O-66 JCM 10158 . 2.30.7.21.9.013 OTU 1 seq prokMSA_id:015564 U87827 clone v2. 2.30.7.21.9.014 OTU 1 seq prokMSA_id:015570 U87828 clone v3. 2.30.7.21.9.015 OTU 1 seq prokMSA_id:015571 U87829 clone v5. 2.30.7.21.9.016 OTU 1 seq prokMSA_id:088625 AY307987 Streptococcus sp. 2.30.7.21.9.017 OTU 1 seq prokMSA_id:098605 AY186077 clone EACUL1D3 small subunit 2.30.7.21.9.999 poor quality 100 seqs prokMSA_id:026454 AB028322 oral SH1 prokMSA_id:051004 AB028323 oral SH2 prokMSA_id:027811 AB028329 oral SH8 prokMSA_id:023682 AB028330 oral SH9 prokMSA_id:038531 AB028332 oral SH11 prokMSA_id:030403 AB028335 oral SH14 prokMSA_id:027435 AB028339 oral SH19 prokMSA_id:034596 AB028343 oral SH26 prokMSA_id:020581 AB028348 oral SH56 prokMSA_id:042230 AB028349 oral SH57 prokMSA_id:044103 AB028350 oral SH60 prokMSA_id:016689 AB028356 oral SH68 prokMSA_id:034652 AB028357 oral SH69 prokMSA_id:037118 AB028358 oral SH70 prokMSA_id:037350 AB028360 oral SH72 prokMSA_id:024094 AB028362 oral SH75 prokMSA_id:037254 AB028363 oral AP60-1 prokMSA_id:024704 AB028364 oral AP60-3 prokMSA_id:031792 AB028367 oral AP60-8 prokMSA_id:049116 AB028370 oral AP60-11 prokMSA_id:050884 AB028372 oral AP60-13 prokMSA_id:029430 AB028375 oral AP60-16 prokMSA_id:035571 AB028376 oral AP60-17 prokMSA_id:052711 AB028388 oral AP60-32 prokMSA_id:021697 AB028392 oral AP60-36 prokMSA_id:023469 AB028395 oral AP60-40 prokMSA_id:025959 AB028396 oral AP60-41 prokMSA_id:032519 AB028397 oral AP60-44 prokMSA_id:050446 AB028398 oral AP60-45 prokMSA_id:024614 AB028399 oral AP60-46 prokMSA_id:037185 AB028401 oral AP60-48 prokMSA_id:030189 AB028407 oral AP60-55 prokMSA_id:044541 AB028423 oral RP55-14 prokMSA_id:051647 AB028427 oral RP55-19 prokMSA_id:041440 AB028430 oral RP55-22 prokMSA_id:025652 AB028433 oral RP55-25 prokMSA_id:039470 AB028434 oral RP55-27 prokMSA_id:049345 AB028435 oral RP55-28 prokMSA_id:029372 AB028436 oral RP55-30 prokMSA_id:021276 AB028438 oral RP55-36 prokMSA_id:040399 AB028443 oral RP55-46 prokMSA_id:048456 AB038372 Streptococcus sp. PSH1a prokMSA_id:018461 AB038373 Streptococcus sp. PSH1b prokMSA_id:062124 AB064835 Streptococcus sp. clone:NB2G5 prokMSA_id:062123 AB064836 Streptococcus sp. clone:NB2E12 prokMSA_id:055582 AB064839 Streptococcus sp. clone:NB5C1 prokMSA_id:056038 AB064840 Streptococcus sp. clone:NB5D5 prokMSA_id:086931 AB099789 clone: OLDA-B7 prokMSA_id:086923 AB099798 clone: OLDB-D1 prokMSA_id:070456 AF078908 Streptococcus sp. prokMSA_id:035928 AF202016 human oral A30 prokMSA_id:052358 AF202018 human oral A27 prokMSA_id:029099 AF269178 Streptococcus sanguinis strain UASsB11 prokMSA_id:027425 AF269179 Streptococcus sanguinis strain UASsB22 prokMSA_id:033105 AF269180 Streptococcus sanguinis strain UASsB49 prokMSA_id:021235 AF269181 Streptococcus sanguinis strain UASsB56 prokMSA_id:049959 AF269182 Streptococcus sanguinis strain UASsB39 prokMSA_id:022510 AF269183 Streptococcus sanguinis strain UASsB14 prokMSA_id:068194 AF365536 clone BM89MF5BH9 prokMSA_id:068134 AF365603 clone BT60MF7BA5 prokMSA_id:070510 AF393759 Streptococcus mitis isolate 1Ch prokMSA_id:058142 AF393760 Streptococcus mitis isolate 2Du prokMSA_id:058141 AF393761 Streptococcus mitis prokMSA_id:058140 AF393763 Streptococcus mitis isolate 5Ki prokMSA_id:069931 AF393764 Streptococcus mitis isolate 6Mi prokMSA_id:022662 AF422599 clone t025 prokMSA_id:073329 AF481950 Streptococcus gordonii prokMSA_id:084522 AF499875 clone LCTI30 prokMSA_id:056473 AF530381 clone cadhufec8c10 prokMSA_id:071134 AJ404518 Streptococcus SS5 prokMSA_id:023909 AJ404519 Streptococcus SS4 prokMSA_id:023899 AJ404520 Streptococcus SS2 prokMSA_id:031377 AJ404521 Streptococcus SS3 prokMSA_id:073178 AJ405045 A18-K2 clone A18-K2 prokMSA_id:069688 AJ514238 Streptococcus sanguis isolate MBRG 5.5 prokMSA_id:069173 AJ514244 Streptococcus sp. isolate MBRG 5.3 prokMSA_id:096550 AJ555131 Streptococcus mitis prokMSA_id:084892 AY231308 clone ER1_8 prokMSA_id:089661 AY239612 Streptococcus sp. prokMSA_id:089510 AY307988 Streptococcus sp. prokMSA_id:089973 AY325739 Streptococcus sp. isolate PCR amplicon RL 1530 prokMSA_id:090032 AY325741 Streptococcus sp. isolate PCR amplicon RL 1563 prokMSA_id:089883 AY325747 Streptococcus sp. isolate PCR amplicon RL 1835 prokMSA_id:088056 AY325755 Streptococcus sp. isolate PCR amplicon RL 2055 prokMSA_id:089112 AY325757 Streptococcus sp. isolate PCR amplicon RL 2109 prokMSA_id:088990 AY325763 Streptococcus sp. isolate PCR amplicon RL 2304 prokMSA_id:088256 AY325764 Streptococcus sp. isolate PCR amplicon RL 2403 prokMSA_id:091977 AY332613 Streptococcus sp. PCR amplicon RL 2452 prokMSA_id:091457 AY332614 Streptococcus sp. PCR amplicon RL 2457 prokMSA_id:093250 AY357958 Streptococcus sp. cEV15 prokMSA_id:096914 AY388406 clone Adhuright19 prokMSA_id:097714 AY388414 clone Adhuright48 prokMSA_id:096976 AY388417 clone Adhuright56 prokMSA_id:015550 U02918 Streptococcus mitis str. SK 51 NCTC 3165. prokMSA_id:015575 U02920 Streptococcus pneumoniae ATCC 6303. prokMSA_id:015553 X53652 Streptococcus parasanguinis str. 85-81. prokMSA_id:015559 X58308 Streptococcus oralis str. PB 182 NCTC 11427 . prokMSA_id:015558 X58312 Streptococcus pneumoniae NCTC 7465 . prokMSA_id:054863 Z73433 species isolate Boom-7m-08 prokMSA_id:030051 Z73445 species isolate Boom-3m-12 2.30.7.21.10 STC.SANGUINIS 1 seq 2.30.7.21.10.999 poor quality 1 seq prokMSA_id:015577 X53653 Streptococcus sanguinis NCTC 7863. 2.30.8 MYCOPLASMA_AND_RELATIVES 1058 seqs 2.30.8.1 STR.SBR2004 2 seqs 2.30.8.1.999 poor quality 2 seqs prokMSA_id:035196 AJ232838 clone LBS22 prokMSA_id:015578 X84549 str. SBR2004. 2.30.8.2 ACHOLEPLASMA-ANAEROPLASMA_GROUP 630 seqs 2.30.8.2.1 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_I 227 seqs 2.30.8.2.1.001 OTU 35 seqs prokMSA_id:069885 AF056094 Sugarcane yellows phytoplasma I strain ScYP I-Barb ; tRNA-Ile complete ; and 23S prokMSA_id:073130 AF056095 Sugarcane yellows phytoplasma I strain ScYP I-Afr ; tRNA-Ile complete ; and 23S prokMSA_id:015598 AF060875 Phytoplasma Virginia grapevine yellows phytoplasma VGYIII str. prokMSA_id:054971 AF147706 Chayote witches' broom phytoplasma ChWBIII strain ChWBIIICh10 -23S intergenic spacer region and tRNA-Ile complete ; 23S prokMSA_id:053311 AF147707 Chayote witches' broom phytoplasma ChWBIII strain ChWBIIIMor5 -23S intergenic spacer region and tRNA-Ile complete ; 23S prokMSA_id:015599 AF173558 Phytoplasma Clover yellow edge phytoplasma str. CYE-L. prokMSA_id:015597 AF175304 str. CYE-C. prokMSA_id:015596 AF177383 Phytoplasma Soybean veinal necrosis phytoplasma str. SVN. prokMSA_id:015595 AF189288 str. CYE-Or. prokMSA_id:033747 AF190223 Poinsettia branch-inducing phytoplasma operon prokMSA_id:051281 AF190226 Walnut witches' broom phytoplasma operon A prokMSA_id:018521 AF190227 Walnut witches' broom phytoplasma operon B prokMSA_id:038010 AF190228 Spiraea stunt phytoplasma operon A prokMSA_id:052044 AF236121 Peach rosette phytoplasma prokMSA_id:048082 AF236122 Little peach phytoplasma prokMSA_id:018269 AF236123 Red suture phytoplasma prokMSA_id:017222 AF244363 Black locust witches'-broom phytoplasma operon prokMSA_id:037584 AF274876 Strawberry leafy fruit phytoplasma prokMSA_id:038649 AF302841 Black raspberry witches'-broom phytoplasma clone BRWB7 operon prokMSA_id:066824 AF370119 Dandelion virescence phytoplasma operon A prokMSA_id:066821 AF370120 Dandelion virescence phytoplasma operon B prokMSA_id:066820 AF373105 Cirsium white leaf phytoplasma operon A prokMSA_id:066819 AF373106 Cirsium white leaf phytoplasma operon B prokMSA_id:067362 AF495657 Chinaberry yellows phytoplasma ; tRNA-Ile complete ; and 23S prokMSA_id:087775 AF510724 Milkweed yellows phytoplasma ; -23S intergenic spacer region and tRNA-Ile complete ; and 23S prokMSA_id:063392 AF522458 Phytoplasma sp. PY3 prokMSA_id:083476 AF533231 Western X phytoplasma tRNA-Ser complete ; immunodominant protein idpA putative polymerase III dnaX conserved hypothetical protein putative -directed polymerase delta subunit rpoE putative phosphatidylserine synthase pssA putative phosphatidylserine decarboxylase psd putative CTP synthase ctrA hypothetical protein putative chromosome replication initiation protein dnaD putative ribonuclease III rnc putative fatty acid/phospholipid biosynthesis plsX putative ATP-dependent helicase recG conserved hypothetical GTP-binding protein putative valyl-tRNA synthetase valS putative lysophospholipase pldB putative cation-transporting ATPase pacL and putative peptidyl-tRNA hydrolase pth genes complete cds; complete ; tRNA-Ile complete ; and 23S prokMSA_id:097114 AJ557264 Faba bean phyllody phytoplasma prokMSA_id:066027 AY034090 Blueberry proliferation phytoplasma ; tRNA-Ile complete ; and 23S prokMSA_id:062836 AY049029 Gaillardia phyllody phytoplasma ; tRNA-Ile complete ; and 23S prokMSA_id:058988 AY081816 Garlic Decline Phytoplasma -23S intergenic spacer region and tRNA-Ile complete ; and 23S prokMSA_id:058989 AY081817 China-tree decline phytoplasma -23S intergenic spacer region and tRNA-Ile complete ; and 23S prokMSA_id:015584 D12580 str. tsuwabuki witches' broom. prokMSA_id:055569 D12580 Tsuwabuki witches'-broom phytoplasma prokMSA_id:015594 L04682 unnamed organism. 2.30.8.2.1.003 OTU 6 seqs prokMSA_id:043388 AH002780 Chokecherry X disease mycoplasmalike organism prokMSA_id:018863 AH002784 Western X mycoplasmalike organism prokMSA_id:018103 AH003069 Peach yellow leafroll mycoplasmalike organism prokMSA_id:015639 L27009 unnamed organism. prokMSA_id:015610 L27041 unnamed organism. prokMSA_id:015645 L27048 unnamed organism. 2.30.8.2.1.004 OTU 8 seqs prokMSA_id:053962 AF390136 Almond witches'- broom phytoplasma strain AlmWB1 ; -23S intergenic spacer complete ; tRNA-Ile complete ; and 23S prokMSA_id:053113 AF390137 Almond witches'- broom phytoplasma strain AlmWB2 ; -23S intergenic spacer complete ; tRNA-Ile complete ; and 23S prokMSA_id:068808 AF455038 Almond witches'-broom phytoplasma strain AlmWB3 ; tRNA-Ile complete ; and 23S prokMSA_id:068807 AF455039 Almond witches'-broom phytoplasma strain AlmWB4 ; tRNA-Ile complete ; and 23S prokMSA_id:068806 AF455040 Almond witches'-broom phytoplasma strain AlmWB-P1 ; tRNA-Ile complete ; and 23S prokMSA_id:053053 AF455041 Almond witches'-broom phytoplasma strain AlmWB-N1 ; tRNA-Ile complete ; and 23S prokMSA_id:064545 AF515636 Candidatus Phytoplasma phoeniceum strain A4 ; 16-23S intergenic spacer and tRNA-Ile complete ; and 23S prokMSA_id:064533 AF515637 Candidatus Phytoplasma phoeniceum strain 21 ; 16-23S intergenic spacer and tRNA-Ile complete ; and 23S 2.30.8.2.1.008 OTU 2 seqs prokMSA_id:069575 AJ289192 Stylosanthes little leaf phytoplasma and tRNA-Ile genes prokMSA_id:015613 Y17055 Phytoplasma sp. str. StLL. 2.30.8.2.1.010 OTU 64 seqs prokMSA_id:078322 AB052875 Phytoplasma sp. JWB-Ky prokMSA_id:078260 AB052876 Phytoplasma sp. JWB-G1 prokMSA_id:078043 AB052877 Phytoplasma sp. JWB-G2 prokMSA_id:077969 AB052878 Phytoplasma sp. JWB-F prokMSA_id:077772 AB052879 Phytoplasma sp. JWB-Ko prokMSA_id:080823 AB076404 Potato witches'-broom phytoplasma -23S intergenic spacer region 23S and complete sequences prokMSA_id:015612 AF036354 Phytoplasma 'Fragaria multicipita' phytoplasma str. FRA9083. prokMSA_id:015632 AF092209 Phytoplasma Ash yellows phytoplasma str. AshY1. prokMSA_id:015633 AF105315 Phytoplasma Ash yellows phytoplasma str. AshY3. prokMSA_id:015634 AF105316 Phytoplasma Ash yellows phytoplasma str. AshY5. prokMSA_id:015635 AF105317 Phytoplasma Ash yellows phytoplasma str. LWB3. prokMSA_id:015604 AF122910 Phytoplasma Elm yellows phytoplasma str. EY1. prokMSA_id:015605 AF122911 Phytoplasma Elm yellows phytoplasma str. WVEY. prokMSA_id:015606 AF122912 Phytoplasma HD1 str. HD1. prokMSA_id:025887 AF176319 Flavescence doree phytoplasma operon prokMSA_id:015603 AF189214 str. EY1. prokMSA_id:015631 AF189215 str. AshY1. prokMSA_id:020661 AF190224 'Fragaria multicipita' phytoplasma operon A prokMSA_id:043247 AF190225 'Fragaria multicipita' phytoplasma operon B prokMSA_id:068906 AF228052 Brinjal little leaf phytoplasma complete ; and tRNA-Ile complete prokMSA_id:069030 AF228053 Periwinkle little leaf phytoplasma complete ; and tRNA-Ile complete prokMSA_id:069655 AF268895 Elm phytoplasma 'Arlington Heights' ; tRNA-Ile complete ; and 23S prokMSA_id:042718 AF279272 Zizyphus jujube witches'-broom phytoplasma prokMSA_id:069629 AF305198 Virginia creeper phytoplasma ; and tRNA-Ile complete prokMSA_id:055407 AF305240 Ziziphus jujube witches'-broom phytoplasma ; and tRNA-Ile complete prokMSA_id:045354 AF363066 Clover proliferation phytoplasma prokMSA_id:050829 AF409069 Clover proliferation phytoplasma strain EY-IL 2 prokMSA_id:052099 AF409070 Clover proliferation phytoplasma strain EY-IL 1 prokMSA_id:060512 AF411592 Erigeron witches'-broom phytoplasma strain RPWB ; -23S intergenic spacer and tRNA-Ile complete ; and 23S prokMSA_id:077291 AF458378 Flavescence doree phytoplasma isolate FD-C ; -23S intergenic spacer complete ; and 23S prokMSA_id:077558 AF458379 Flavescence doree phytoplasma isolate FD2000 ; -23S intergenic spacer complete ; and 23S prokMSA_id:017967 AY028789 Alder yellows phytoplasma prokMSA_id:066024 AY034608 Erigeron witches'-broom phytoplasma ; tRNA-Ile complete ; and 23S prokMSA_id:054286 AY072722 Ziziphus jujube witches'-broom phytoplasma ; -23S intergenic spacer region and tRNA-Ile complete ; and 23S prokMSA_id:086747 AY197642 Alder yellows phytoplasma strain ALY882 prokMSA_id:086864 AY197643 Flavescence doree phytoplasma strain FD70 prokMSA_id:087547 AY197644 Flavescence doree phytoplasma strain FD-D prokMSA_id:087003 AY197645 Flavescence doree phytoplasma strain FD-C prokMSA_id:087635 AY197646 Alder yellows phytoplasma strain ALY prokMSA_id:087317 AY197647 Alder yellows phytoplasma strain ALY1068 prokMSA_id:087980 AY197648 Rubus stunt phytoplasma strain RUS prokMSA_id:086755 AY197649 Rubus stunt phytoplasma strain Rus400 prokMSA_id:087774 AY197650 Rubus stunt phytoplasma strain Rus971 prokMSA_id:087911 AY197651 Rubus stunt phytoplasma strain RuSR19 prokMSA_id:088039 AY197652 Spartium witches'-broom phytoplasma strain SpaWB229 prokMSA_id:087229 AY197653 Spartium witches'-broom phytoplasma strain SpaWB251 prokMSA_id:087732 AY197654 Hemp dogbane yellows phytoplasma strain HD1 prokMSA_id:087307 AY197655 Elm yellows phytoplasma strain EY1 prokMSA_id:087917 AY197656 Elm yellows phytoplasma strain EY-125 prokMSA_id:087073 AY197657 Elm yellows phytoplasma strain EY-626 prokMSA_id:086960 AY197658 Elm yellows phytoplasma strain EY-627 prokMSA_id:086835 AY197659 Cherry lethal yellows phytoplasma strain CLY-5 prokMSA_id:086811 AY197660 Peach yellows phytoplasma strain PY-In prokMSA_id:087456 AY197661 Jujube witches'-broom phytoplasma strain JWB prokMSA_id:082781 AY270156 Centaurea solstitialis virescence phytoplasma complete ; tRNA-Ile complete ; and 23S prokMSA_id:086783 AY283184 Sunshine tree witches'-broom phytoplasma prokMSA_id:091757 AY332658 Peach yellows phytoplasma strain PY-In2 prokMSA_id:091186 AY332659 Nectarine yellows phytoplasma strain NecY-In1 prokMSA_id:015630 X68339 str. ASHY. prokMSA_id:015623 X68376 str. ULW. prokMSA_id:015602 X76560 str. FD. prokMSA_id:015611 X83431 unnamed organism. prokMSA_id:015607 Y16387 Phytoplasma Alder yellows phytoplasma. prokMSA_id:015608 Y16395 Phytoplasma Rubus stunt phytoplasma. 2.30.8.2.1.011 OTU 2 seqs prokMSA_id:021474 AH002783 Beet leafhopper transmitted virescence mycoplasmalike organism prokMSA_id:015579 L27045 unnamed organism. 2.30.8.2.1.012 OTU 2 seqs prokMSA_id:022080 AH002781 Elm yellows mycoplasmalike organism in Chinese elm prokMSA_id:015601 L27025 unnamed organism. 2.30.8.2.1.014 OTU 29 seqs prokMSA_id:015621 AB026155 Phytoplasma Gph subsp. Gerbera phyllody phytoplasma str. GPh. prokMSA_id:015622 AF028813 Phytoplasma Chinese pigeon pea witches'-broom phytoplasma. prokMSA_id:028401 AF200718 Cactus phytoplasma 'Martinez-Soriano 1999' complete prokMSA_id:018469 AF320575 Phytoplasma sp. pathovar mosaic-inducing complete prokMSA_id:020350 AF329315 Potato purple top phytoplasma prokMSA_id:060303 AF438413 Omani alfalfa witches'-broom phytoplasma complete prokMSA_id:023349 AJ274621 Sugarcane phytoplasma I TBB prokMSA_id:039304 AJ274627 Sugarcane phytoplasma E SUNH prokMSA_id:019735 AJ274628 Sugarcane phytoplasma D TBB prokMSA_id:015616 AJ274629 Phytoplasma Sugarcane phytoplasma H str. SUNH. prokMSA_id:051278 AJ274631 Sugarcane phytoplasma A FBP prokMSA_id:041747 AJ289191 Pigeon pea little leaf phytoplasma prokMSA_id:048933 AJ289193 Sweet potato little leaf phytoplasma strain V4 prokMSA_id:042358 AJ293216 Cactus witches'-broom phytoplasma isolate YNO1 prokMSA_id:073858 AJ295330 Cocky apple witches' broom phytoplasma tRNA-Ile and prokMSA_id:058026 AY144608 'Vinca minor' phytoplasma prokMSA_id:096747 AY169322 Alfalfa witches'-broom phytoplasma -23S intergenic spacer tRNA-Ile complete ; and 23S prokMSA_id:095604 AY169323 Alfalfa witches'-broom phytoplasma -23S intergenic spacer tRNA-Ile complete ; and 23S prokMSA_id:015592 L33765 unnamed organism. prokMSA_id:015580 U15442 unnamed organism. prokMSA_id:015615 X76433 Mycoplasma sp. str. SUNHP. prokMSA_id:015624 X83432 unnamed organism. prokMSA_id:015617 X90591 unnamed organism. prokMSA_id:015618 Y08173 Phytoplasma sp. prokMSA_id:015619 Y10096 unnamed organism. prokMSA_id:015620 Y10097 unnamed organism. prokMSA_id:015626 Y15863 Phytoplasma sp. str. BoLL. prokMSA_id:015625 Y16390 Phytoplasma Italian alfalfa witches-broom phytoplasma. prokMSA_id:015581 Y16393 Phytoplasma Picris echioides phyllody phytoplasma. 2.30.8.2.1.015 OTU 1 seq prokMSA_id:023582 AF361018 Ethiopian Gliricidia little leaf phytoplasma 2.30.8.2.1.016 OTU 6 seqs prokMSA_id:023748 AF361020 Florida Pandanus decline phytoplasma prokMSA_id:065944 AF498307 Coconut lethal yellowing phytoplasma strain Jamaica LYJ-C8 prokMSA_id:065943 AF498308 Coconut lethal yellowing phytoplasma strain Florida LYF-C5 prokMSA_id:065941 AF498309 Coconut lethal yellowing phytoplasma strain Florida LY-C2 prokMSA_id:096989 AJ539178 Sugarcane yellows phytoplasma strain Mauritius group 4 from mixed RLFP profile prokMSA_id:015638 U18747 unnamed organism. 2.30.8.2.1.017 OTU 1 seq prokMSA_id:024602 AJ274622 Sugarcane phytoplasma J StLL 2.30.8.2.1.018 OTU 1 seq prokMSA_id:024669 AJ251229 Sugarcane phytoplasma C 2.30.8.2.1.019 OTU 2 seqs prokMSA_id:025555 AJ289195 Vigna little leaf phytoplasma prokMSA_id:015590 Y15866 Phytoplasma sp. str. ViLL. 2.30.8.2.1.021 OTU 2 seqs prokMSA_id:034052 AH003067 Lethal yellows of palms mycoplasmalike organism prokMSA_id:015629 L27030 unnamed organism. 2.30.8.2.1.022 OTU 1 seq prokMSA_id:058412 AB054986 Candidatus Phytoplasma castaneae 2.30.8.2.1.023 OTU 10 seqs prokMSA_id:043871 AF237615 Carludovica palmata leaf yellowing phytoplasma prokMSA_id:068903 AF434989 Texas Phoenix palm phytoplasma ; tRNA-Ile complete ; and 23S prokMSA_id:064252 AF500329 Phytoplasma sp. LfY1-Guerrero prokMSA_id:064253 AF500330 Phytoplasma sp. LfY4MA3-Oaxaca prokMSA_id:064251 AF500331 Phytoplasma sp. LfY4MA5-Oaxaca prokMSA_id:064254 AF500332 Phytoplasma sp. LfY2Alv2-Guerrero prokMSA_id:064250 AF500333 Phytoplasma sp. LfY5PE56-Oaxaca prokMSA_id:064249 AF500334 Phytoplasma sp. LfY5PE65-Oaxaca prokMSA_id:072718 U18753 Yucatan coconut lethal decline phytoplasma prokMSA_id:015585 U18753 unnamed organism. 2.30.8.2.1.024 OTU 1 seq prokMSA_id:038859 AJ315965 Australian lucerne yellows phytoplasma 2.30.8.2.1.026 OTU 6 seqs prokMSA_id:069017 AF248957 Pigeon pea witches'-broom phytoplasma complete ; tRNA-Ile complete ; and 23S prokMSA_id:026945 AF361017 Honduran Gliricidia little leaf phytoplasma prokMSA_id:038724 AF361019 Florida Rhynchosia little leaf phytoplasma prokMSA_id:055620 AF515638 Lactuca serriola phytoplasma strain P12 ; 16-23S intergenic spacer and tRNA-Ile complete ; and 23S prokMSA_id:015587 U18763 unnamed organism. prokMSA_id:015588 Y18052 Phytoplasma Knautia arvensis phyllody phytoplasma. 2.30.8.2.1.027 OTU 3 seqs prokMSA_id:069009 AF086621 Loofah witches'-broom phytoplasma tRNA-Ile complete ; 23S ; and 23S genes complete ; tRNA-Ile complete ; 5S complete ; and tRNA-Val and tRNA-Asn genes complete prokMSA_id:069018 AF248956 Loofah witches'-broom phytoplasma complete ; tRNA-Ile complete ; and 23S prokMSA_id:048457 AF353090 Loofah witches'-broom phytoplasma strain LfWB clone 1 operon B parital 2.30.8.2.1.028 OTU 2 seqs prokMSA_id:052553 AH002782 Potato witches'-broom mycoplasmalike organism prokMSA_id:015643 L27039 unnamed organism. 2.30.8.2.1.029 OTU 1 seq prokMSA_id:053611 AJ310849 Phytoplasma sp. PinP intergenic spacer and tRNA-Ile 2.30.8.2.1.030 OTU 1 seq prokMSA_id:054260 AF147708 Hibiscus witches'-broom phytoplasma strain HibWB26 -23S intergenic spacer region and tRNA-Ile complete ; 23S 2.30.8.2.1.035 OTU 1 seq prokMSA_id:063017 AF509322 Sorghum bunchy shoot phytoplasma 2.30.8.2.1.036 OTU 1 seq prokMSA_id:064303 AF521672 Weeping tea tree witches'-broom phytoplasma complete ; tRNA-Ile complete ; and 23S 2.30.8.2.1.037 OTU 11 seqs prokMSA_id:069014 AF248961 Bermuda grass white leaf phytoplasma complete ; tRNA-Ile complete ; and 23S prokMSA_id:063016 AF509321 Cynodon white leaf phytoplasma prokMSA_id:063010 AF509323 Sorghum grassy shoot phytoplasma prokMSA_id:063014 AF509324 Sorghum grassy shoot phytoplasma variant I prokMSA_id:063013 AF509325 Sorghum grassy shoot phytoplasma variant II prokMSA_id:086379 AJ550984 Bermuda grass white leaf phytoplasma isolate BGWL-C1 prokMSA_id:083287 AJ550985 Bermuda grass white leaf phytoplasma isolate BGWL-C2 prokMSA_id:083541 AJ550986 Bermuda grass white leaf phytoplasma isolate BGWL-CA prokMSA_id:015627 D12581 str. rice yellow dwarf. prokMSA_id:062521 D12581 Rice yellow dwarf phytoplasma prokMSA_id:015636 X76432 str. SCWL. 2.30.8.2.1.038 OTU 1 seq prokMSA_id:015582 L33764 unnamed organism. 2.30.8.2.1.039 OTU 1 seq prokMSA_id:015586 X76430 Mycoplasma sp. str. VAC. 2.30.8.2.1.040 OTU 1 seq prokMSA_id:015589 Y16389 Phytoplasma Picris echioides yellows phytoplasma. 2.30.8.2.1.041 OTU 2 seqs prokMSA_id:015591 L33733 unnamed organism. prokMSA_id:015644 L33766 unnamed organism. 2.30.8.2.1.042 OTU 1 seq prokMSA_id:015593 L33763 unnamed organism. 2.30.8.2.1.043 OTU 1 seq prokMSA_id:015614 L33761 unnamed organism. 2.30.8.2.1.044 OTU 1 seq prokMSA_id:015628 L33759 unnamed organism. 2.30.8.2.1.045 OTU 1 seq prokMSA_id:015640 X76429 Mycoplasma sp. str. BVK. 2.30.8.2.1.046 OTU 1 seq prokMSA_id:015641 Y15865 Phytoplasma sp. str. GaLL. 2.30.8.2.1.047 OTU 1 seq prokMSA_id:015646 X83438 unnamed organism. 2.30.8.2.1.048 OTU 2 seqs prokMSA_id:015647 X80117 unnamed organism. prokMSA_id:072848 X80117 Phytoplasma sp. strain LD 2.30.8.2.1.049 OTU 2 seqs prokMSA_id:015648 Y13912 Phytoplasma sp. str. Coconut lethal yellowing disease. prokMSA_id:015649 Y14175 Phytoplasma sp. str. Coconut lethal yellowing disease. 2.30.8.2.1.050 OTU 1 seq prokMSA_id:077527 AF458380 Flavescence doree phytoplasma isolate FD92 ; -23S intergenic spacer complete ; and 23S 2.30.8.2.1.051 OTU 1 seq prokMSA_id:095467 AJ539180 Sugarcane phytoplasma strain Mauritius group 3 RFLP profile 2.30.8.2.1.052 OTU 1 seq prokMSA_id:096699 AJ539179 Sugarcane phytoplasma strain Mauritius group 3 from mixed RFLP profile 2.30.8.2.1.999 poor quality 10 seqs prokMSA_id:025804 AJ274623 Sugarcane phytoplasma B StLL prokMSA_id:092236 AY247417 Phaseolus lunatus phytoplasma similar to and -23S intergenic spacer region prokMSA_id:082821 AY248753 Pigeon pea witches'-broom phytoplasma and -23S intergenic spacer prokMSA_id:026243 L27040 Potato witches'-broom mycoplasmalike organism prokMSA_id:015583 L33735 unnamed organism. prokMSA_id:015609 L33770 unnamed organism. prokMSA_id:015642 X68377 str. EY. prokMSA_id:034453 X70782 Mycoplasma-like organism prokMSA_id:015600 X77482 Phytoplasma sp. str. clover phyllodyitalian strain. prokMSA_id:015637 Y16388 Phytoplasma Bermuda grass white leaf phytoplasma. 2.30.8.2.2 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_II 33 seqs 2.30.8.2.2.001 OTU 2 seqs prokMSA_id:027932 AH002778 Apple proliferation MLO prokMSA_id:015662 L26995 str. Apple proliferation. 2.30.8.2.2.002 OTU 23 seqs prokMSA_id:069015 AF248958 Apple proliferation phytoplasma complete ; tRNA-Ile complete ; and 23S prokMSA_id:048909 AF319549 Pear decline phytoplasma isolate PDE1 prokMSA_id:033402 AF319550 Pear decline phytoplasma isolate PDE15 prokMSA_id:030644 AF319551 Pear decline phytoplasma isolate PDE18 prokMSA_id:042654 AF319552 Pear decline phytoplasma isolate PDE19 prokMSA_id:085021 AJ311020 European stone fruit yellows phytoplasma strain ALBERC421 prokMSA_id:085325 AJ311021 European stone fruit yellows phytoplasma strain ALBERC420 prokMSA_id:083883 AJ311022 European stone fruit yellows phytoplasma strain PRUNE380 prokMSA_id:085317 AJ311023 European stone fruit yellows phytoplasma strain PRUNE379 prokMSA_id:085298 AJ311024 European stone fruit yellows phytoplasma strain PRUNE378 prokMSA_id:083455 AJ311025 European stone fruit yellows phytoplasma strain PRUNE143B prokMSA_id:088051 AJ542543 Candidatus Phytoplasma pyri tRNA-Ile and 23S strain PD1 prokMSA_id:087313 AJ542544 Candidatus Phytoplasma prunorum tRNA-Ile and 23S strain ESFY-G1 prokMSA_id:086991 AJ542545 Candidatus Phytoplasma prunorum tRNA-Ile and 23S strain ESFY-G2 prokMSA_id:054668 AY029540 European stone fruit yellows phytoplasma and 23S genes prokMSA_id:015654 X68374 str. PPER. prokMSA_id:015661 X68375 Candidatus Phytoplasma mali IGS1 tRNA-Ile and 23S strain AT prokMSA_id:015660 X72206 str. Italian. prokMSA_id:015659 X76425 Mycoplasma sp. str. PD. prokMSA_id:015656 X76426 Mycoplasma sp. prokMSA_id:015655 Y11933 Phytoplasma sp. str. ESFY. prokMSA_id:015657 Y16392 Phytoplasma Pear decline phytoplasma. prokMSA_id:015658 Y16394 Phytoplasma Peach yellow leafroll phytoplasma. 2.30.8.2.2.003 OTU 2 seqs prokMSA_id:044020 AH002777 Apricot chlorotic leafroll mycoplasmalike organism prokMSA_id:015652 L26997 str. ACLR. 2.30.8.2.2.004 OTU 1 seq prokMSA_id:015650 X76431 Mycoplasma sp. str. BAWB. 2.30.8.2.2.005 OTU 2 seqs prokMSA_id:093038 AJ430067 Apple proliferation phytoplasma isolate SPAR701 prokMSA_id:015651 X92869 Phytoplasma sp. 2.30.8.2.2.006 OTU 1 seq prokMSA_id:015653 X77372 unnamed organism. 2.30.8.2.2.007 OTU 1 seq prokMSA_id:082892 AY135524 'Allocasuarina muelleriana' phytoplasma clone 3 2.30.8.2.2.008 OTU 1 seq prokMSA_id:083736 AY135523 'Allocasuarina muelleriana' phytoplasma clone 2 2.30.8.2.3 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_III 93 seqs 2.30.8.2.3.004 OTU 1 seq prokMSA_id:020209 AJ274624 Sugarcane phytoplasma G AY variety AluI 2.30.8.2.3.005 OTU 1 seq prokMSA_id:020556 AJ274625 Sugarcane phytoplasma G AY 2.30.8.2.3.010 OTU 2 seqs prokMSA_id:031476 AH002779 Blueberry stunt mycoplasmalike organism prokMSA_id:015666 L27007 unnamed organism. 2.30.8.2.3.011 OTU 1 seq prokMSA_id:032876 AB010425 Candidatus Phytoplasma japonicum 2.30.8.2.3.013 OTU 53 seqs prokMSA_id:071715 AB078436 Phytoplasma sp. WDWB-K prokMSA_id:015681 AF177384 Phytoplasma Alfalfa stunt phytoplasma str. AlfS. prokMSA_id:051779 AF200431 Cirsium yellows phytoplasma prokMSA_id:021066 AF217247 Potato purple top phytoplasma prokMSA_id:021676 AF222063 Aster yellows phytoplasma operon prokMSA_id:031795 AF222064 Tomato big bud phytoplasma operon prokMSA_id:046674 AF222065 Clover phyllody phytoplasma strain CPh operon A prokMSA_id:021501 AF222066 Clover phyllody phytoplasma strain CPh operon B prokMSA_id:042685 AF245439 Aster yellows phytoplasma prokMSA_id:036905 AF268403 Aster yellows phytoplasma A isolate 98UW159 prokMSA_id:030043 AF268404 Aster yellows phytoplasma A isolate 98UW166A prokMSA_id:048464 AF268405 Aster yellows phytoplasma O isolate 98UW166B prokMSA_id:037239 AF268406 Aster yellows phytoplasma A isolate 99UW93 prokMSA_id:044579 AF268407 Aster yellows phytoplasma B isolate 99UW89 prokMSA_id:045677 AF268408 Aster yellows phytoplasma A isolate 99UW111 prokMSA_id:046328 AF268409 Aster yellows phytoplasma B isolate 99UW108 prokMSA_id:021611 AF279271 Paulownia witches'-broom phytoplasma prokMSA_id:050045 AF291682 Carrot proliferation phytoplasma prokMSA_id:032190 AF322644 Aster yellows phytoplasma strain AY1 clone 14 operon A prokMSA_id:028502 AF322645 Aster yellows phytoplasma strain AY1 clone 10 operon B prokMSA_id:068930 AF335107 'Rehmannia glutinosa var. purpurea' phytoplasma and tRNA-Ile prokMSA_id:017288 AF356846 Cactus phytoplasma 'Martinez-Soriano 2001' prokMSA_id:072720 AF450325 Rose cv. Frisco phytoplasma prokMSA_id:018665 AF453328 Phytoplasma sp. PY1 prokMSA_id:076240 AF453416 Oat proliferation phytoplasma operon prokMSA_id:082346 AF487779 Maize bushy stunt phytoplasma operon prokMSA_id:066094 AF510323 Aconitum proliferation phytoplasma ; tRNA-Ile complete ; and 23S prokMSA_id:077493 AF515771 'Helichrysum bracteatum' phytoplasma ; tRNA-Ile complete ; and 23S prokMSA_id:056725 AF522457 Phytoplasma sp. PY1 prokMSA_id:033517 AJ274626 Sugarcane phytoplasma G AY variety Alu2 prokMSA_id:066025 AY034089 Cherry little leaf phytoplasma prokMSA_id:055023 AY075038 Mulberry dwarf phytoplasma ; -23S intergenic spacer region and tRNA-Ile complete ; 23S prokMSA_id:060545 AY101386 Epilobium phyllody phytoplasma ; -23S intergenic spacer and tRNA-Ile complete and 23S prokMSA_id:064235 AY102273 Valeriana yellows phytoplasma clone ValY1 rrnB operon prokMSA_id:055493 AY102274 Valeriana yellows phytoplasma clone ValY2 operon prokMSA_id:087447 AY102275 Strawberry phylloid fruit phytoplasma prokMSA_id:079786 AY192577 Paulownia witches'-broom phytoplasma prokMSA_id:083590 AY241706 Aster yellows phytoplasma prokMSA_id:084985 AY249247 Marigold phyllody phytoplasma clone RIRM-2003.1 prokMSA_id:086083 AY249248 Marigold phyllody phytoplasma clone RIRM-2003.2 prokMSA_id:087355 AY283183 Orange little leaf phytoplasma prokMSA_id:087693 AY283185 Petunia dwarf phytoplasma prokMSA_id:087517 AY283186 Petunia flat stem phytoplasma prokMSA_id:015677 D12569 str. onion yellows; tomato yellows mulberry dwarf; Paulownia prokMSA_id:062523 D12569 Onion yellows phytoplasma prokMSA_id:015685 L33760 unnamed organism. prokMSA_id:015663 M30790 unnamed organism. prokMSA_id:015680 M86340 str. SAY. prokMSA_id:015682 U89378 Phytoplasma sp. str. rape phylody. prokMSA_id:015683 U96616 Phytoplasma STRAWB2 str. STRAWB2. prokMSA_id:015679 X68338 str. ACLR. prokMSA_id:015687 X68373 str. AAY. prokMSA_id:015684 X83870 str. KV. 2.30.8.2.3.014 OTU 2 seqs prokMSA_id:043213 AH003068 Paulownia witches'-broom mycoplasmalike organism prokMSA_id:015686 L27032 unnamed organism. 2.30.8.2.3.015 OTU 2 seqs prokMSA_id:055663 AF248960 Mexican periwinkle virescence phytoplasma complete ; tRNA-Ile complete ; and 23S prokMSA_id:015676 U96614 Phytoplasma STRAWB1 str. STRAWB1. 2.30.8.2.3.016 OTU 1 seq prokMSA_id:060694 AY083605 Buckland valley grapevine yellows phytoplasma operon 2.30.8.2.3.017 OTU 1 seq prokMSA_id:067193 AF495882 Chinaberry yellows phytoplasma strain CbY1 ; -23S intergenic spacer region and tRNA-Ile complete ; and 23S 2.30.8.2.3.019 OTU 1 seq prokMSA_id:015664 L33762 unnamed organism. 2.30.8.2.3.020 OTU 1 seq prokMSA_id:015665 L33767 unnamed organism. 2.30.8.2.3.024 OTU 19 seqs prokMSA_id:069016 AF248959 Stolbur phytoplasma complete ; tRNA-Ile complete ; and 23S prokMSA_id:015671 AJ243044 Phytoplasma Strawberry green petal phytoplasma str. SGP. prokMSA_id:015672 AJ243045 Phytoplasma Strawberry lethal yellows phytoplasma str. SLY. prokMSA_id:085826 AJ311026 Stolbur phytoplasma strain LLEDO103A prokMSA_id:084175 AJ311028 Stolbur phytoplasma strain OLIVE101A prokMSA_id:082649 AJ311029 Stolbur phytoplasma strain OLIVE148A prokMSA_id:083785 AJ311030 Stolbur phytoplasma strain PRUNE104A prokMSA_id:098239 AJ539181 Sugarcane phytoplasma strain Mauritius group 1 RFLP profile RsaI variant prokMSA_id:096361 AJ539182 Sugarcane phytoplasma strain Mauritius group 1 RFLP profile prokMSA_id:077071 AY169308 Stolbur phytoplasma isolate Ph-ch2 prokMSA_id:075772 AY169309 Stolbur phytoplasma isolate Ph-lily prokMSA_id:015669 L76865 Phytoplasma Australian grapevine yellows phytoplasma subsp. prokMSA_id:015675 U43569 Phytoplasma sp. = operon. prokMSA_id:015667 U43570 Phytoplasma sp. =rrnB operon. prokMSA_id:015673 X76427 Mycoplasma sp. str. STOL. prokMSA_id:015678 X76428 str. VK. prokMSA_id:015668 X95706 Mycoplasma sp. str. AGY. prokMSA_id:015670 Y10095 unnamed organism. prokMSA_id:015674 Y16391 Phytoplasma Bindweed yellows phytoplasma. 2.30.8.2.3.999 poor quality 8 seqs prokMSA_id:053508 AF482012 Phaseolus vulgaris phytoplasma prokMSA_id:068793 AF483909 Phaseolus vulgaris phytoplasma clone 62 prokMSA_id:086273 AJ311027 Stolbur phytoplasma strain OLIVE125A prokMSA_id:092474 AJ430066 Stolbur phytoplasma isolate MA-Fungi 49661 prokMSA_id:068770 AY079171 Cosmos bippinatus phyllody phytoplasma prokMSA_id:055489 AY081140 Aster yellows phytoplasma prokMSA_id:085741 AY249249 Marigold phyllody phytoplasma clone RIRM-2003.3 prokMSA_id:017571 L27033 Paulownia witches'-broom mycoplasmalike organism 2.30.8.2.4 ACP.SP_STR_J233 5 seqs 2.30.8.2.4.001 OTU 1 seq prokMSA_id:015688 L33734 Acholeplasma sp. str. J-233. 2.30.8.2.4.002 OTU 1 seq prokMSA_id:088641 AY327216 clone ZB134 2.30.8.2.4.999 poor quality 3 seqs prokMSA_id:068591 AF486679 clone W6-38-SC1-100 prokMSA_id:068579 AF486696 clone W6-38-SC1-118 prokMSA_id:085390 AY197395 clone B02R010 2.30.8.2.5 ACP.LAIDLAWII_SUBGROUP 12 seqs 2.30.8.2.5.001 OTU 1 seq prokMSA_id:015689 U14906 Acholeplasma oculi ISM 1499. 2.30.8.2.5.002 OTU 1 seq prokMSA_id:015690 U14904 Acholeplasma oculi str. 19L ATCC 27350 . 2.30.8.2.5.003 OTU 2 seqs prokMSA_id:015692 M23932 Acholeplasma laidlawii str. JA1. prokMSA_id:015691 U14905 Acholeplasma laidlawii str. PG8 ATCC 23206 . 2.30.8.2.5.004 OTU 1 seq prokMSA_id:015693 AB009230 clone RFN82. 2.30.8.2.5.005 OTU 1 seq prokMSA_id:015694 AF058006 unnamed organism. 2.30.8.2.5.006 OTU 1 seq prokMSA_id:015695 AF031479 Acholeplasma polakii str. FC-097. 2.30.8.2.5.007 OTU 1 seq prokMSA_id:083638 AY257485 Mesoplasma pleciae 2.30.8.2.5.008 OTU 1 seq prokMSA_id:084792 AY228695 clone SSE3 2.30.8.2.5.999 poor quality 3 seqs prokMSA_id:028958 AJ270183 symbiont of Hodotermes mossambicus Hm2 prokMSA_id:065095 AY095721 firmicute NL-9R prokMSA_id:064888 AY095894 firmicute pT-437 2.30.8.2.6 ACP.MODICUM_SUBGROUP 37 seqs 2.30.8.2.6.001 OTU 2 seqs prokMSA_id:041875 AF371522 clone p-2013-s959-5 prokMSA_id:021042 AF371523 clone p-974-s962-5 2.30.8.2.6.002 OTU 1 seq prokMSA_id:021634 AF371528 clone p-3025-SwA5 2.30.8.2.6.003 OTU 1 seq prokMSA_id:021652 AF371530 clone p-1735-b3 2.30.8.2.6.004 OTU 2 seqs prokMSA_id:021971 AF412968 Acholeplasma axanthum prokMSA_id:030323 AJ311394 Acholeplasma axanthum strain 118 2.30.8.2.6.005 OTU 1 seq prokMSA_id:029625 AF132232 adhufec202 2.30.8.2.6.006 OTU 1 seq prokMSA_id:033343 AF371524 clone p-3208-42A2 2.30.8.2.6.007 OTU 1 seq prokMSA_id:040949 AF371525 clone p-2601-9F5 2.30.8.2.6.008 OTU 1 seq prokMSA_id:042395 AF371529 clone p-3133-SwA3 2.30.8.2.6.009 OTU 1 seq prokMSA_id:042538 AF432140 Firmicutes sp. oral clone FM046 2.30.8.2.6.010 OTU 1 seq prokMSA_id:050779 AF371527 clone p-3870-23G5 2.30.8.2.6.011 OTU 1 seq prokMSA_id:051606 AJ408240 equine intestinal sp. PL33 clone PL33 2.30.8.2.6.012 OTU 1 seq prokMSA_id:052403 AF371526 clone p-3053-SwA5 2.30.8.2.6.013 OTU 1 seq prokMSA_id:015696 U16758 Mycoplasma feliminutum ATCC 25749 . 2.30.8.2.6.014 OTU 1 seq prokMSA_id:015698 AF001742 clone RF9. 2.30.8.2.6.015 OTU 1 seq prokMSA_id:015699 AF001741 clone RF8. 2.30.8.2.6.016 OTU 1 seq prokMSA_id:015700 AF001770 clone RF39. 2.30.8.2.6.017 OTU 1 seq prokMSA_id:015701 AF018546 clone JW6. 2.30.8.2.6.018 OTU 1 seq prokMSA_id:071687 AF132233 adhufec279 2.30.8.2.6.019 OTU 1 seq prokMSA_id:092326 AY343123 clone REC1M_45 2.30.8.2.6.020 OTU 1 seq prokMSA_id:094765 AB120830 clone:MC42C12 2.30.8.2.6.021 OTU 1 seq prokMSA_id:094769 AB120829 clone:MC42H09 2.30.8.2.6.999 poor quality 14 seqs prokMSA_id:022214 AY006688 rumen prokMSA_id:018597 AY006788 rumen prokMSA_id:085730 AY092209 clone BM89 prokMSA_id:082593 AY092211 clone BM80 prokMSA_id:084595 AY092212 clone BF68 prokMSA_id:086072 AY092213 clone BM3 prokMSA_id:097000 AY239433 clone rc2-12 complete prokMSA_id:088747 AY311641 clone YRCC02 prokMSA_id:090281 AY311670 clone YRCC50 prokMSA_id:090200 AY315262 rumen clone JRCI14 prokMSA_id:015697 M23933 Acholeplasma modicum str. PG 49 ATCC 29102 . prokMSA_id:015702 U04657 Acholeplasma axanthum str. S-743. prokMSA_id:017978 U81683 clone vadinBE02 prokMSA_id:046405 U81742 clone vadinHB41 2.30.8.2.7 ANP.VARIUM_SUBGROUP 10 seqs 2.30.8.2.7.001 OTU 1 seq prokMSA_id:015703 M25050 Anaeroplasma abactoclasticum str. 6-1 ATCC 27879 . 2.30.8.2.7.002 OTU 1 seq prokMSA_id:015704 AF001736 clone RF3. 2.30.8.2.7.003 OTU 1 seq prokMSA_id:015708 AB015266 Cytophaga sp. str. JTB220. 2.30.8.2.7.004 OTU 1 seq prokMSA_id:088083 AY315337 rumen clone JRCJ70 2.30.8.2.7.005 OTU 1 seq prokMSA_id:089088 AY315321 rumen clone JRCJ26 2.30.8.2.7.006 OTU 1 seq prokMSA_id:089481 AY315331 rumen clone JRCJ49 2.30.8.2.7.007 OTU 1 seq prokMSA_id:090120 AB113680 clone:AAB44 2.30.8.2.7.999 poor quality 3 seqs prokMSA_id:015707 M23934 Anaeroplasma varium str. A-2 ATCC 43167 . prokMSA_id:015706 M25049 Anaeroplasma bactoclasticum str. JR ATCC 27112 . prokMSA_id:015705 NONE Anaeroplasma intermedium str. 5LA. 2.30.8.2.8 C.RAMOSUM_ASSEMBLAGE 103 seqs 2.30.8.2.8.001 OTU 35 seqs prokMSA_id:046764 AB030221 Catenibacterium mitsuokai strain:JCM 10606 prokMSA_id:027171 AB030222 Catenibacterium mitsuokai strain:JCM 10607 prokMSA_id:033198 AB030223 Catenibacterium mitsuokai strain:JCM 10608 prokMSA_id:043417 AB030224 Catenibacterium mitsuokai strain:JCM 10609 prokMSA_id:021138 AB030225 Catenibacterium mitsuokai strain:JCM 10610 prokMSA_id:040839 AB030226 Catenibacterium mitsuokai strain:JCM 10611 prokMSA_id:033339 AF371520 clone p-4205-6Wa5 prokMSA_id:092603 AY343095 clone REC1M_36 prokMSA_id:092103 AY343096 clone REC1M_22 prokMSA_id:092414 AY343097 clone REC1M_11 prokMSA_id:092668 AY343098 clone REC1M_79 prokMSA_id:093027 AY343099 clone REC1M_81 prokMSA_id:092323 AY343100 clone REC1M_86 prokMSA_id:092389 AY343101 clone REC1M_60 prokMSA_id:092192 AY343102 clone REC1M_87 prokMSA_id:092871 AY343103 clone REC1M_13 prokMSA_id:093062 AY343104 clone REC1M_65 prokMSA_id:092718 AY343166 clone REC1M_66 prokMSA_id:092336 AY343167 clone REC1M_70 prokMSA_id:093085 AY343265 clone DONOR_23 prokMSA_id:092310 AY343267 clone DONOR_102 prokMSA_id:092531 AY343268 clone DONOR_6 prokMSA_id:092324 AY343269 clone DONOR_9 prokMSA_id:092630 AY343270 clone DONOR_88 prokMSA_id:092577 AY343271 clone DONOR_10 prokMSA_id:092186 AY343273 clone DONOR_5 prokMSA_id:092822 AY343275 clone DONOR_83 prokMSA_id:093106 AY343276 clone DONOR_93 prokMSA_id:092542 AY343277 clone DONOR_57 prokMSA_id:092304 AY343279 clone DONOR_12 prokMSA_id:092898 AY343280 clone DONOR_16 prokMSA_id:092915 AY343283 clone DONOR_63 prokMSA_id:092589 AY343284 clone DONOR_84 prokMSA_id:092280 AY343285 clone DONOR_85 prokMSA_id:092137 AY343286 clone DONOR_68 2.30.8.2.8.002 OTU 3 seqs prokMSA_id:074862 AB030218 Coprobacillus catenaformis strain: JCM 10603 prokMSA_id:036159 AB030219 Coprobacillus catenaformis strain: JCM 10604 prokMSA_id:021822 AB030220 Coprobacillus catenaformis strain: JCM 10605 2.30.8.2.8.003 OTU 2 seqs prokMSA_id:015711 AF028350 Clostridium cocleatum str. CM972. prokMSA_id:045363 Y18188 Clostridium cocleatum strain DSM 1551 2.30.8.2.8.004 OTU 1 seq prokMSA_id:051516 AF429359 CCAJG3 2.30.8.2.8.005 OTU 1 seq prokMSA_id:051691 AJ408176 equine intestinal sp. ML30 clone ML30 2.30.8.2.8.006 OTU 3 seqs prokMSA_id:061059 AF530337 clone cadhufec17c02sav prokMSA_id:098276 AY388423 clone Adhuright85 prokMSA_id:096235 AY388451 clone Adhuleft79 2.30.8.2.8.007 OTU 3 seqs prokMSA_id:061065 AF530332 clone cadhufec20a10yvb prokMSA_id:015712 M23731 Clostridium ramosum str. 113-I ATCC 25582 . prokMSA_id:015709 X73440 Clostridium ramosum str. 113-I ATCC 25582 . 2.30.8.2.8.008 OTU 1 seq prokMSA_id:015710 U81729 clone vadinHA31. 2.30.8.2.8.009 OTU 1 seq prokMSA_id:015713 AB009179 clone RFN20. 2.30.8.2.8.010 OTU 1 seq prokMSA_id:015714 AB009222 clone RFN74. 2.30.8.2.8.011 OTU 3 seqs prokMSA_id:091073 AY338311 clone BREC_58 prokMSA_id:015716 X73441 Clostridium spiroforme DSM 1552 . prokMSA_id:015715 X75908 Clostridium spiroforme ATCC 29900 . 2.30.8.2.8.012 OTU 1 seq prokMSA_id:089068 AY315352 rumen clone JRCK18 2.30.8.2.8.013 OTU 1 seq prokMSA_id:094367 AY386236 clone Dpcom146 2.30.8.2.8.999 poor quality 47 seqs prokMSA_id:062101 AB064860 Clostridium sp. clone:NO6 prokMSA_id:062104 AB064865 firmicute clone:NB2A5 prokMSA_id:062083 AB064881 Clostridium sp. clone:NS4E12 prokMSA_id:062039 AB064934 Human intestinal firmicute CB12 prokMSA_id:065275 AB075659 chicken cecal clone:1B3 prokMSA_id:056047 AB075661 chicken cecal clone:1E3 prokMSA_id:065273 AB075662 chicken cecal clone:1D6 prokMSA_id:065271 AB075663 chicken cecal clone:2E5 prokMSA_id:065257 AB075681 Firmicutes str. C30 prokMSA_id:065252 AB075686 Clostridium sp. clone:1A5 prokMSA_id:058705 AB080878 human intestinal clone:JW2E12 prokMSA_id:058691 AB080899 Clostridium sp. CJ61 prokMSA_id:087188 AB099797 clone: OLDB-C1 prokMSA_id:018565 AF096607 isolate RCA08 prokMSA_id:024180 AF096612 isolate RCA27 prokMSA_id:027990 AF218218 clone LSIV prokMSA_id:021687 AF339857 clone R prokMSA_id:074661 AF339858 clone E prokMSA_id:034956 AF445224 Swine fecal FPC55 prokMSA_id:042589 AF445225 Swine fecal FPC21 prokMSA_id:023802 AF445226 Swine fecal FPC62 prokMSA_id:019818 AF445227 Swine fecal FPC54 prokMSA_id:069086 AY006485 rumen prokMSA_id:069122 AY006492 rumen prokMSA_id:069333 AY006499 rumen prokMSA_id:069326 AY006503 rumen prokMSA_id:069236 AY006522 rumen prokMSA_id:041728 AY006756 rumen prokMSA_id:069356 AY006874 rumen prokMSA_id:055321 AY006903 rumen prokMSA_id:069127 AY006916 rumen prokMSA_id:055782 AY006920 rumen prokMSA_id:069192 AY006925 rumen prokMSA_id:069370 AY006928 rumen prokMSA_id:069058 AY006930 rumen prokMSA_id:085354 AY220487 Clostridium sp. S9 prokMSA_id:096511 AY239465 Clostridium sp. cTPY-2-4 prokMSA_id:089237 AY315295 rumen clone JRCI61 prokMSA_id:092234 AY343094 clone REC1M_8 prokMSA_id:092084 AY343266 clone DONOR_101 prokMSA_id:092955 AY343272 clone DONOR_62 prokMSA_id:092621 AY343282 clone DONOR_56 prokMSA_id:092456 AY343304 clone DONOR_87 prokMSA_id:015719 M22351 Asteroleplasma anaerobium str. 161 ATCC 27880 . prokMSA_id:015718 M23727 Lactobacillus vitulinus str. 185 ATCC 27783 . prokMSA_id:015717 M23729 Lactobacillus catenaformis str. 1871 ATCC 25536 . prokMSA_id:046817 U81666 clone vadinBB43 2.30.8.2.9 EUB.CYLINDROIDES_SUBGROUP 110 seqs 2.30.8.2.9.001 OTU 6 seqs prokMSA_id:021980 AB031056 Solobacterium moorei isolate:RCA59-74 prokMSA_id:041366 AB031057 Solobacterium moorei isolate:RCA59-75 prokMSA_id:019191 AB031058 Solobacterium moorei isolate:RCA59-77 prokMSA_id:041537 AY005052 Solobacterium sp. oral clone K010 prokMSA_id:022422 AY044915 Bulleidia moorei strain AHP 13983 prokMSA_id:016818 AY044916 Bulleidia moorei strain JCM 10645 2.30.8.2.9.003 OTU 1 seq prokMSA_id:027366 AJ408190 equine intestinal sp. MW03 clone MW03 2.30.8.2.9.006 OTU 3 seqs prokMSA_id:031844 AF220064 Bulleidia extructa prokMSA_id:015723 U13036 sp. str. W 1365. prokMSA_id:015722 Z36271 sp. str. W 1365. 2.30.8.2.9.007 OTU 1 seq prokMSA_id:032694 AF429360 CCAJG71 2.30.8.2.9.008 OTU 12 seqs prokMSA_id:015725 AB019247 Erysipelothrix rhusiopathiae str. alpha-P15 ATCC 19414 . prokMSA_id:015738 AB019248 Erysipelothrix tonsillarum str. T-305 ATCC 43339 . prokMSA_id:015732 AB019249 Erysipelothrix rhusiopathiae str. Pecs 56. prokMSA_id:015733 AB019250 Erysipelothrix rhusiopathiae str. 715. prokMSA_id:033753 AB034200 Erysipelothrix rhusiopathiae prokMSA_id:038274 AB034201 Erysipelothrix tonsillarum prokMSA_id:077952 AB055905 Erysipelothrix rhusiopathiae -23S spacer region strain:ATCC 19414 prokMSA_id:078170 AB055906 Erysipelothrix tonsillarum -23S spacer region strain:ATCC 43339 prokMSA_id:077904 AB055907 Erysipelothrix rhusiopathiae -23S spacer region strain:Pecs 56 prokMSA_id:077965 AB055908 Erysipelothrix rhusiopathiae -23S spacer region strain:715 prokMSA_id:088075 AJ550617 Erysipelothrix inopinata strain 143-02 prokMSA_id:015730 M23728 Erysipelothrix rhusiopathiae str. alpha-P15 ATCC 19414 . 2.30.8.2.9.009 OTU 1 seq prokMSA_id:037902 AF150695 Elbe River snow isolate Iso15_3 2.30.8.2.9.010 OTU 2 seqs prokMSA_id:044294 AF371515 clone p-326-a3 prokMSA_id:039574 AF371516 clone p-1630-c5 2.30.8.2.9.011 OTU 1 seq prokMSA_id:041982 AF429362 CCAJG27 2.30.8.2.9.012 OTU 1 seq prokMSA_id:042372 AB018187 cylindroides 2.30.8.2.9.013 OTU 1 seq prokMSA_id:042560 AF371518 clone p-75-a5 2.30.8.2.9.014 OTU 1 seq prokMSA_id:043628 AF371513 clone p-2731-24E5 2.30.8.2.9.015 OTU 1 seq prokMSA_id:044802 AF429361 CCAJG145 2.30.8.2.9.016 OTU 1 seq prokMSA_id:049369 AF371514 clone p-1763-b3 2.30.8.2.9.017 OTU 2 seqs prokMSA_id:049837 AB018186 cylindroides prokMSA_id:092615 AY343113 clone REC1M_50 2.30.8.2.9.019 OTU 18 seqs prokMSA_id:041589 AF335900 sp. clone LabF44 prokMSA_id:018256 AF335908 sp. clone LabF83 prokMSA_id:029486 AF335909 sp. clone LabF85 prokMSA_id:051862 AF335910 sp. clone LabF87 prokMSA_id:028748 AF335912 sp. clone LabF96 prokMSA_id:050433 AF371512 clone p-392-o3 prokMSA_id:092643 AY343105 clone REC1M_32 prokMSA_id:092322 AY343106 clone REC1M_34 prokMSA_id:092194 AY343108 clone REC1M_42 prokMSA_id:092296 AY343109 clone REC1M_80 prokMSA_id:092197 AY343110 clone REC1M_48 prokMSA_id:092765 AY343111 clone REC1M_52 prokMSA_id:093152 AY343112 clone REC1M_63 prokMSA_id:092369 AY343274 clone DONOR_54 prokMSA_id:092164 AY343305 clone DONOR_19 prokMSA_id:092070 AY343306 clone DONOR_52 prokMSA_id:092658 AY343307 clone DONOR_15 prokMSA_id:095999 AY388435 clone Adhuleft21 2.30.8.2.9.020 OTU 1 seq prokMSA_id:052474 AF304435 cf. Clostridium sp. MLG055 2.30.8.2.9.021 OTU 1 seq prokMSA_id:054730 AF371517 clone p-2772-24E5 2.30.8.2.9.022 OTU 1 seq prokMSA_id:059904 AY133091 low G+C Gram-positive clone ccslm238 2.30.8.2.9.023 OTU 1 seq prokMSA_id:060757 AY128088 low G+C Gram-positive clone PSB-M-3 2.30.8.2.9.024 OTU 4 seqs prokMSA_id:015735 AF028352 str. CM970. prokMSA_id:061070 AF530326 clone cadhufec19e09yvb prokMSA_id:080352 AY194237 Clostridium innocuum strain RLUH-1 prokMSA_id:015734 M23732 Clostridium innocuum str. B-3 ATCC 14501 . 2.30.8.2.9.025 OTU 1 seq prokMSA_id:066941 AJ306753 clone SHA-44 2.30.8.2.9.026 OTU 1 seq prokMSA_id:015728 Y11466 Holdemania filiformis str. J1-31B-1 ATCC 51649 . 2.30.8.2.9.027 OTU 1 seq prokMSA_id:015729 L34683 tortuosum ATCC 25548 . 2.30.8.2.9.028 OTU 1 seq prokMSA_id:015731 Z94007 clone T79. 2.30.8.2.9.029 OTU 1 seq prokMSA_id:015737 Z94006 clone T21. 2.30.8.2.9.030 OTU 1 seq prokMSA_id:015739 L34682 dolichum ATCC 29143 . 2.30.8.2.9.031 OTU 2 seqs prokMSA_id:078125 AB055909 Erysipelothrix rhusiopathiae -23S spacer region strain:KG-BB1 prokMSA_id:078143 AB055910 Erysipelothrix rhusiopathiae -23S spacer region strain:KG-BB2 2.30.8.2.9.032 OTU 1 seq prokMSA_id:086130 AY231335 clone ER2_10 2.30.8.2.9.033 OTU 1 seq prokMSA_id:089878 AY297808 Mollicutes pACH93 2.30.8.2.9.034 OTU 1 seq prokMSA_id:098789 AJ417075 Allobaculum stercoricanis strain DSM 13632T 2.30.8.2.9.999 poor quality 39 seqs prokMSA_id:062102 AB064867 firmicute clone:NB2C7 prokMSA_id:062096 AB064869 firmicute clone:NB2D10 prokMSA_id:062035 AB064937 Clostridium sp. CS4 prokMSA_id:062032 AB064938 Clostridium sp. CS9 prokMSA_id:058707 AB080876 human intestinal clone:JW1C6 prokMSA_id:058706 AB080877 human intestinal clone:JW2B1 prokMSA_id:058689 AB080900 Clostridium sp. CJ66 prokMSA_id:056343 AB080901 sp. CJ70 prokMSA_id:086721 AB099787 clone: OLDA-E11 prokMSA_id:088029 AB099788 clone: OLDA-F9 prokMSA_id:035292 AF096611 isolate RCA153 prokMSA_id:038213 AF293916 rumen clone 14 prokMSA_id:020871 AF335877 sp. clone LabF502 prokMSA_id:027458 AF335878 sp. clone LabF503 prokMSA_id:054669 AF376375 ckncm142-F1M.1E12 prokMSA_id:032211 AF429234 clone CR99-2-48 prokMSA_id:055604 AF486687 clone W6-38-SC1-109 prokMSA_id:068577 AF486698 clone W6-38-SC1-120 prokMSA_id:024155 AJ239991 gram positive lowGC strain DGGE band CIBAC-1 prokMSA_id:071970 AJ239992 gram positive lowGC strain DGGE band CIBAC-2 prokMSA_id:019813 AJ241721 microorganism clone Cal17 prokMSA_id:035850 AJ241780 microorganism clone Cow39 prokMSA_id:059211 AJ458202 low G+C Gram-positive prokMSA_id:050138 AY006538 rumen prokMSA_id:037520 AY006584 rumen prokMSA_id:059316 AY122341 clone II-30 prokMSA_id:059315 AY122342 clone II-32 prokMSA_id:059314 AY122343 clone II-36 prokMSA_id:085066 AY261824 clone OTU ADB-67 prokMSA_id:092562 AY343107 clone REC1M_78 prokMSA_id:097181 AY388419 clone Adhuright64 prokMSA_id:015720 L34616 cylindroides ATCC 27528. prokMSA_id:015721 L34617 cylindroides ATCC 27803 . prokMSA_id:072786 L34617 cylindroides prokMSA_id:015724 M23730 Streptococcus pleomorphus str. EFB 61/60B ATCC 29734 . prokMSA_id:015736 M59230 biforme ATCC 27806 . prokMSA_id:015727 U21665 Erysipelothrix tonsillarum CCUG 31352 . prokMSA_id:015726 U21666 Erysipelothrix sp. str. Vadkasca. prokMSA_id:019896 U81660 clone vadinBB22 2.30.8.3 SPIROPLASMA_GROUP 110 seqs 2.30.8.3.1 M.MYCOIDES_SUBGROUP 68 seqs 2.30.8.3.1.001 OTU 54 seqs prokMSA_id:015774 AF009830 str. 7/1a. prokMSA_id:015775 AF009831 str. 8789. prokMSA_id:015776 AF009832 str. 9081. prokMSA_id:015777 AF009833 str. 91106/C550/1. prokMSA_id:015778 AF009834 str. 9231. prokMSA_id:015779 AF009835 str. 95043. prokMSA_id:015780 AF009836 str. GL102. prokMSA_id:015781 AF009837 str. M79/93. prokMSA_id:015747 AF009838 str. 7/1a. prokMSA_id:015748 AF009839 str. 8789. prokMSA_id:015749 AF009840 str. 9081. prokMSA_id:015750 AF009841 str. 91106/550/1. prokMSA_id:015751 AF009842 str. 9231. prokMSA_id:015752 AF009843 str. 95043. prokMSA_id:015753 AF009844 str. GL102. prokMSA_id:015754 AF009845 str. M79/93. prokMSA_id:015759 AF085350 str. 8756-13. prokMSA_id:027213 AF202923 Mycoplasma capricolum capripneumoniae operon prokMSA_id:047300 AF202924 Mycoplasma capricolum capripneumoniae rrnB operon prokMSA_id:020656 AF202925 Mycoplasma capricolum capripneumoniae operon prokMSA_id:034810 AF202926 Mycoplasma capricolum capripneumoniae rrnB operon prokMSA_id:030974 AF202927 Mycoplasma capricolum capripneumoniae operon prokMSA_id:031582 AF202928 Mycoplasma capricolum capripneumoniae rrnB operon prokMSA_id:035482 AF232908 Mycoplasma capricolum subsp. capripneumoniae operon A prokMSA_id:022976 AF232909 Mycoplasma capricolum subsp. capripneumoniae operon B prokMSA_id:070694 AF261724 Mycoplasma sp. 'bovine group 7' isolate 57 prokMSA_id:071050 AF261725 Mycoplasma sp. 'bovine group 7' isolate 4 prokMSA_id:071421 AF261726 Mycoplasma sp. 'bovine group 7' isolate 33 prokMSA_id:071703 AF261727 Mycoplasma sp. 'bovine group 7' isolate 36 prokMSA_id:069937 AF261728 Mycoplasma sp. 'bovine group 7' isolate 37 prokMSA_id:070102 AF261729 Mycoplasma sp. 'bovine group 7' isolate 47 prokMSA_id:072686 AF261730 Mycoplasma sp. 'bovine group 7' isolate 48 prokMSA_id:015761 M10588 Mycoplasma sp. str. PG50 =. prokMSA_id:015763 M94728 Mycoplasma sp. str. F38 =rrnB operon. prokMSA_id:015741 U26036 Mycoplasma mycoides subsp. capri str. PG3 =. prokMSA_id:015755 U26037 Mycoplasma mycoides subsp. capri str. PG3 =rrnB. prokMSA_id:015771 U26038 Mycoplasma mycoides subsp. mycoides str. PG1 =. prokMSA_id:015760 U26039 Mycoplasma mycoides subsp. mycoides str. PG1 =rrnB. prokMSA_id:015766 U26040 Mycoplasma capricolum subsp. capricolum str. G5 =. prokMSA_id:015765 U26041 Mycoplasma capricolum subsp. capricolum str. G5 =rrnB. prokMSA_id:015773 U26042 Mycoplasma capricolum subsp. capripneumoniae str. F38 =. prokMSA_id:015767 U26043 Mycoplasma mycoides subsp. mycoides str. Y-goat =. prokMSA_id:015770 U26044 Mycoplasma mycoides subsp. mycoides str. Y-goat =rrnB. prokMSA_id:015758 U26045 Mycoplasma capricolum subsp. capricolum str. California kid prokMSA_id:015744 U26046 Mycoplasma capricolum subsp. capricolum str. California kid prokMSA_id:015762 U26047 Mycoplasma capricolum subsp. capricolum str. E570/iii =. prokMSA_id:015782 U26048 Mycoplasma capricolum subsp. capricolum str. E570/iii =rrnB. prokMSA_id:015772 U26049 Mycoplasma mycoides subsp. mycoides str. UM30847 =. prokMSA_id:015743 U26050 Mycoplasma mycoides subsp. mycoides str. UM30847 =rrnB. prokMSA_id:015768 U26051 Mycoplasma capricolum subsp. capripneumoniae str. 4/2LC prokMSA_id:015746 U26052 Mycoplasma capricolum subsp. capripneumoniae str. 4/2LC prokMSA_id:015757 U26053 Mycoplasma sp. str. PG50 =. prokMSA_id:015769 U26054 Mycoplasma sp. str. PG50 =rrnB. prokMSA_id:015740 X00921 Mycoplasma capricolum ATCC 27343 =rrnB. 2.30.8.3.1.002 OTU 1 seq prokMSA_id:015756 AF036954 Entomoplasma freundtii. 2.30.8.3.1.003 OTU 1 seq prokMSA_id:070686 AF547212 Entomoplasma lucivorax 2.30.8.3.1.004 OTU 1 seq prokMSA_id:071794 AF303132 Mesoplasma lactucae ATCC 49193 2.30.8.3.1.005 OTU 1 seq prokMSA_id:075155 AY155670 Entomoplasma luminosum strain ATCC 49195 2.30.8.3.1.006 OTU 1 seq prokMSA_id:077171 AY157871 Entomoplasma somnilux 2.30.8.3.1.007 OTU 2 seqs prokMSA_id:085440 AY166837 Mollicutes clone III prokMSA_id:084791 AY166838 Mollicutes clone VI 2.30.8.3.1.008 OTU 2 seqs prokMSA_id:085011 AY231458 Mesoplasma syrphidae prokMSA_id:092570 AY351331 Mesoplasma seiffertii 2.30.8.3.1.009 OTU 1 seq prokMSA_id:089352 AF491879 Cf. Mesoplasma symbiont of Acromyrmex octospinosus 2.30.8.3.1.999 poor quality 4 seqs prokMSA_id:015742 L14607 Mycoplasma sp. str. F38 = operon. prokMSA_id:015764 M23943 Mycoplasma mycoides subsp. mycoides str. UM30847 ATCC 33557. prokMSA_id:015745 U04647 Mycoplasma mycoides subsp. mycoides str. PG1 SC . prokMSA_id:015783 U04648 Mycoplasma mycoides subsp. capri str. PG3. 2.30.8.3.2 M.PUTREFACIENS_SUBGROUP 5 seqs 2.30.8.3.2.001 OTU 3 seqs prokMSA_id:015786 U26055 Mycoplasma putrefaciens str. KS-1 = + rrnB. prokMSA_id:015784 U67945 Mycoplasma cottewii str. VIS ATCC 51347 . prokMSA_id:015785 U67946 Mycoplasma yeatsii str. GIH ATCC 51346 . 2.30.8.3.2.002 OTU 1 seq prokMSA_id:078432 AY177627 Mesoplasma photuris 2.30.8.3.2.999 poor quality 1 seq prokMSA_id:015787 M23938 Mycoplasma putrefaciens str. C30 KS-1 ATCC 15718 . 2.30.8.3.3 MES.SEIFFERTII 1 seq 2.30.8.3.3.001 OTU 1 seq prokMSA_id:015788 L12056 Mesoplasma seiffertii. 2.30.8.3.4 ENP.MELALEUCAE_SUBGROUP 10 seqs 2.30.8.3.4.001 OTU 6 seqs prokMSA_id:015792 AF042194 Mycoplasma monodon str. Australiain. prokMSA_id:071542 AF300327 Mesoplasma florum prokMSA_id:070272 AF305693 Mesoplasma entomophilum prokMSA_id:076006 AY166704 Mesoplasma chauliocola prokMSA_id:077531 AY174170 Mesoplasma grammopterae prokMSA_id:079099 AY187288 Mesoplasma tabanidae 2.30.8.3.4.002 OTU 1 seq prokMSA_id:075831 AY168929 Mesoplasma corruscae 2.30.8.3.4.999 poor quality 3 seqs prokMSA_id:015790 M23931 Mesoplasma entomophilum str. TAC ATCC 43706 . prokMSA_id:015789 M24292 Entomoplasma ellychniae str. ELCN-1 ATCC 43707 . prokMSA_id:015791 M24478 Entomoplasma melaleucae str. M1 ATCC 49191 . 2.30.8.3.5 MES.LACTUCAE 1 seq 2.30.8.3.5.999 poor quality 1 seq prokMSA_id:015793 M24479 Mesoplasma lactucae str. 831-C4 ATCC 49193 . 2.30.8.3.6 SPP.GLADIATORIS_SUBGROUP 9 seqs 2.30.8.3.6.001 OTU 1 seq prokMSA_id:015795 M23937 Spiroplasma apis str. B-31 ATCC 33834 . 2.30.8.3.6.002 OTU 1 seq prokMSA_id:015797 M24476 Spiroplasma taiwanense str. CT-1 ATCC 43302 . 2.30.8.3.6.003 OTU 1 seq prokMSA_id:093470 AY345990 Entomoplasma melaleucae 2.30.8.3.6.004 OTU 1 seq prokMSA_id:094461 AJ515721 Entomoplasmatales clone 2 2.30.8.3.6.005 OTU 1 seq prokMSA_id:095032 AJ515720 Entomoplasmatales clone 42 2.30.8.3.6.999 poor quality 4 seqs prokMSA_id:015794 M24474 Spiroplasma clarkii str. CN-5 ATCC 33827 . prokMSA_id:015796 M24475 Spiroplasma gladiatoris str. TG-1 ATCC 43525 . prokMSA_id:015799 M24481 Spiroplasma monobiae str. MQ-1 ATCC 33825 . prokMSA_id:015798 M24482 Spiroplasma diabroticae str. DU-1 ATCC 43210 . 2.30.8.3.7 SPP.CITRI_SUBGROUP 5 seqs 2.30.8.3.7.001 OTU 1 seq prokMSA_id:015800 M24662 Spiroplasma mirum str. SMCA ATCC 29335 . 2.30.8.3.7.002 OTU 2 seqs prokMSA_id:015802 M23942 Spiroplasma citri str. Maroc-R8-A2 ATCC 27556 . prokMSA_id:015803 X63781 Spiroplasma citri str. R8A2HP. 2.30.8.3.7.003 OTU 1 seq prokMSA_id:094749 AJ515719 Entomoplasmatales clone 61 2.30.8.3.7.999 poor quality 1 seq prokMSA_id:015801 M24483 Spiroplasma poulsonii str. DW-1 ATCC 43153 . 2.30.8.3.8 SPP.IXODETIS_SUBGROUP 11 seqs 2.30.8.3.8.001 OTU 5 seqs prokMSA_id:049332 AB030022 Spiroplasma-symbiont of Antonina crawii prokMSA_id:029463 AB048263 Spiroplasma sp. SM prokMSA_id:041072 AJ006775 Spiroplasma sp. prokMSA_id:015805 AJ132412 Spiroplasma sp. prokMSA_id:053927 AJ245996 Spiroplasma sp. and 23S genes and 23S 2.30.8.3.8.002 OTU 1 seq prokMSA_id:094950 AJ515722 Entomoplasmatales clone 69 2.30.8.3.8.999 poor quality 5 seqs prokMSA_id:022773 AB050443 Spiroplasma sp. NI prokMSA_id:048737 AB050444 Spiroplasma sp. MD-2 prokMSA_id:035626 AB050445 Spiroplasma sp. YR-1 prokMSA_id:020087 AB050446 Spiroplasma sp. YR-2 prokMSA_id:015804 M24477 Spiroplasma ixodetis str. Y-32 ATCC 33835 . 2.30.8.4 M.PNEUMONIAE_GROUP 112 seqs 2.30.8.4.1 UPL.UREALYTICUM_SUBGROUP 32 seqs 2.30.8.4.1.001 OTU 2 seqs prokMSA_id:023473 AB062809 clone:BCf11-11 prokMSA_id:019418 AB062837 clone:BCf7-05 2.30.8.4.1.002 OTU 24 seqs prokMSA_id:040947 AE002112 Ureaplasma urealyticum section 13 of 59 of the complete genome prokMSA_id:050881 AE002127 Ureaplasma urealyticum section 28 of 59 of the complete genome prokMSA_id:015817 AF073446 Ureaplasma urealyticum str. 23 serovar 2 ATCC 27814. prokMSA_id:015818 AF073447 Ureaplasma urealyticum ATCC 27816. prokMSA_id:015819 AF073448 Ureaplasma urealyticum str. 354 serovar 5 ATCC 27817. prokMSA_id:015820 AF073449 Ureaplasma urealyticum ATCC 27819. prokMSA_id:015821 AF073450 Ureaplasma urealyticum str. 960 ATCC 27618 . prokMSA_id:015822 AF073451 Ureaplasma urealyticum ATCC 33175. prokMSA_id:015823 AF073452 Ureaplasma urealyticum ATCC 33699. prokMSA_id:015824 AF073453 Ureaplasma urealyticum ATCC 33695. prokMSA_id:015825 AF073454 Ureaplasma urealyticum ATCC 33696. prokMSA_id:015826 AF073455 Ureaplasma urealyticum ATCC 33698. prokMSA_id:015812 AF073456 Ureaplasma urealyticum ATCC 27815. prokMSA_id:015808 AF073457 Ureaplasma urealyticum str. U26 serovar 14 ATCC 33697. prokMSA_id:015809 AF073458 Ureaplasma urealyticum str. 7 serovar 1 ATCC 27813. prokMSA_id:015813 AF073459 Ureaplasma urealyticum str. Pi serovar 6 ATCC 27818. prokMSA_id:015811 L08642 Ureaplasma urealyticum str. 27. prokMSA_id:015814 M23935 Ureaplasma urealyticum str. 960 ATCC 27618 . prokMSA_id:048336 NC_002162 Ureaplasma urealyticum complete genome prokMSA_id:015807 U06094 Ureaplasma urealyticum str. 7 serovar 1 ATCC 27813. prokMSA_id:015810 U06095 Ureaplasma urealyticum str. U26 serovar 14 ATCC 33697. prokMSA_id:015815 U06096 Ureaplasma urealyticum str. 23 serovar 2 ATCC 27814. prokMSA_id:015816 U06097 Ureaplasma urealyticum str. 354 serovar 5 ATCC 27817. prokMSA_id:015806 U06098 Ureaplasma urealyticum str. Pi serovar 6 ATCC 27818. 2.30.8.4.1.003 OTU 1 seq prokMSA_id:015827 D78650 Ureaplasma diversum str. A417. 2.30.8.4.1.004 OTU 1 seq prokMSA_id:015828 D78648 Ureaplasma canigenitalium str. D6P-C. 2.30.8.4.1.005 OTU 1 seq prokMSA_id:015829 D78649 Ureaplasma cati str. F2. 2.30.8.4.1.006 OTU 1 seq prokMSA_id:015830 D78651 Ureaplasma felinum str. FT2-B. 2.30.8.4.1.007 OTU 1 seq prokMSA_id:015831 U62937 Ureaplasma gallorale ATCC 43346 . 2.30.8.4.1.008 OTU 1 seq prokMSA_id:092391 AY363051 Ureaplasma loridis 2.30.8.4.2 M.IOWAE_SUBGROUP 20 seqs 2.30.8.4.2.001 OTU 1 seq prokMSA_id:032823 AB062770 clone:BCf1-07 2.30.8.4.2.002 OTU 2 seqs prokMSA_id:042807 AF212859 Mycoplasma microti prokMSA_id:015832 U22415 Mycoplasma volis str. IL-372. 2.30.8.4.2.003 OTU 1 seq prokMSA_id:043971 AB062824 clone:BCf4-19 2.30.8.4.2.004 OTU 3 seqs prokMSA_id:076952 AP004174 Mycoplasma penetrans genomic complete section 5/5 prokMSA_id:015833 L10839 Mycoplasma penetrans str. GTU-54-6A1. prokMSA_id:076821 NC_004432 Mycoplasma penetrans complete genome 2.30.8.4.2.005 OTU 2 seqs prokMSA_id:015839 U29676 Mycoplasma iowae. prokMSA_id:015836 X55271 Mycoplasma iowae str. PPAV. 2.30.8.4.2.006 OTU 1 seq prokMSA_id:015837 AF125878 Mycoplasma fastidiosum str. 4822. 2.30.8.4.2.007 OTU 1 seq prokMSA_id:015838 AJ132469 Mycoplasma sp. 2.30.8.4.2.008 OTU 1 seq prokMSA_id:077895 AB089057 Mycoplasma sp. clone:Rs-E42 2.30.8.4.2.009 OTU 1 seq prokMSA_id:077956 AB089054 Mycoplasma sp. clone:Rs-B54 2.30.8.4.2.010 OTU 1 seq prokMSA_id:077983 AB089053 Mycoplasma sp. clone:Rs-B55 2.30.8.4.2.011 OTU 1 seq prokMSA_id:078062 AB089055 Mycoplasma sp. clone:Rs-G80 2.30.8.4.2.012 OTU 1 seq prokMSA_id:078268 AB089056 Mycoplasma sp. clone:Rs-B53 2.30.8.4.2.999 poor quality 4 seqs prokMSA_id:027517 AJ270194 symbiont of Hodotermes mossambicus Hm17 prokMSA_id:066019 AY065998 Mycoplasma BHJA prokMSA_id:015834 M23939 Mycoplasma muris str. RIII4 ATCC 33757 . prokMSA_id:015835 M24293 Mycoplasma iowae str. 695 ATCC 33552 . 2.30.8.4.3 M.GENITALIUM_SUBGROUP 9 seqs 2.30.8.4.3.003 OTU 7 seqs prokMSA_id:015846 AF132740 Mycoplasma pneumoniae str. FH ATCC 15531 . prokMSA_id:015847 AF132741 ATCC 29342. prokMSA_id:015842 L43967 Mycoplasma genitalium str. G37 = . prokMSA_id:015844 M29061 Mycoplasma pneumoniae str. FH ATCC 15531 . prokMSA_id:015845 U00089 Mycoplasma pneumoniae str. M129. prokMSA_id:015840 U39693 Mycoplasma genitalium str. G37 J.G. Tully ATCC 33530 . prokMSA_id:015841 X77334 Mycoplasma genitalium str. G37. 2.30.8.4.3.004 OTU 1 seq prokMSA_id:078183 AB089060 Mycoplasma sp. clone:Rs-K63 2.30.8.4.3.999 poor quality 1 seq prokMSA_id:015843 M21374 Mycoplasma pneumoniae str. FH ATCC 15531 . 2.30.8.4.4 M.GALLISEPTICUM_SUBGROUP 11 seqs 2.30.8.4.4.001 OTU 6 seqs prokMSA_id:089962 AE016969 Mycoplasma gallisepticum strain R section 3 of 4 of the complete genome prokMSA_id:015854 L08896 Mycoplasma gallisepticum str. S6 =rrn16 operon. prokMSA_id:015855 L08897 Mycoplasma gallisepticum str. S6; A5969 = operon. prokMSA_id:015852 L24103 Mycoplasma imitans str. 4229. prokMSA_id:024672 L35043 Mycoplasma gallisepticum strain A5969 RPL33 rpl33 complete cds; and LaDR containing glucose inhibited division protein B gidB_L glucose inhibited division protein A gidA_L polypeptide deformylase def_L guanylate kinase gmk_L putative protein phosphatase putative serine/threonine protein kinase putative glucose-6-phosphate isomerase pgi_L ribulose-phosphate 3-isomerase rpe_L topoisomerase I topA_L and thioredoxin trx_L genes complete cds; truncated rrs' complete ; and unknown genes prokMSA_id:015853 M22441 Mycoplasma gallisepticum str. A5969. 2.30.8.4.4.002 OTU 1 seq prokMSA_id:015848 U44765 Mycoplasma alvi str. Isley . 2.30.8.4.4.003 OTU 1 seq prokMSA_id:015849 AF125879 Mycoplasma cavipharyngis str. 117C. 2.30.8.4.4.004 OTU 1 seq prokMSA_id:015850 M23940 Mycoplasma pirum str. HRC/70-159 ATCC 25960 . 2.30.8.4.4.005 OTU 1 seq prokMSA_id:015851 U09788 Mycoplasma testudinis str. 010 ATCC 43263 . 2.30.8.4.4.006 OTU 1 seq prokMSA_id:077933 AB089058 Mycoplasma sp. clone:Rs-M63 2.30.8.4.5 HBN.FELIS_SUBGROUP 40 seqs 2.30.8.4.5.001 OTU 13 seqs prokMSA_id:023047 AF178677 Haemobartonella felis prokMSA_id:031040 AF197337 Haemobartonella canis prokMSA_id:050405 AF407208 Haemobartonella canis prokMSA_id:056527 AF548631 Mycoplasma haemofelis prokMSA_id:074226 AY069948 Haemobartonella felis prokMSA_id:058429 AY150972 Mycoplasma haemofelis isolate French no. 1 prokMSA_id:071517 AY150973 Mycoplasma haemocanis isolate German no. 1 prokMSA_id:058426 AY150976 Mycoplasma felis isolate Australian no. 1 prokMSA_id:058425 AY150977 Mycoplasma haemofelis isolate Australian no. 2 prokMSA_id:058421 AY150984 Mycoplasma haemofelis isolate UK no. 5 prokMSA_id:058418 AY150985 Mycoplasma haemofelis isolate UK no. 6 prokMSA_id:070879 U88563 Candidatus Mycoplasma haemominutum prokMSA_id:015861 U95297 Haemobartonella felis. 2.30.8.4.5.002 OTU 1 seq prokMSA_id:023180 AF306346 Mycoplasma haemolama 2.30.8.4.5.003 OTU 6 seqs prokMSA_id:050753 AF271154 Haemobartonella felis prokMSA_id:083209 AY150066 Candidatus Mycoplasma haemominutum isolate Spain-2 from cat prokMSA_id:058424 AY150979 Candidatus Mycoplasma haemominutum isolate South African no. 1 prokMSA_id:058423 AY150980 Candidatus Mycoplasma haemominutum isolate UK no. 1 prokMSA_id:073873 AY150981 Candidatus Mycoplasma haemominutum isolate UK no. 2 prokMSA_id:015856 U88564 Haemobartonella felis str. California. 2.30.8.4.5.004 OTU 1 seq prokMSA_id:040691 AF338269 Candidatus Mycoplasma kahanei 2.30.8.4.5.005 OTU 1 seq prokMSA_id:049164 AF338268 Mycoplasma ovis 2.30.8.4.5.006 OTU 1 seq prokMSA_id:051934 AF178676 Mycoplasma erythrodidelphis 2.30.8.4.5.007 OTU 2 seqs prokMSA_id:015857 AF029394 Eperythrozoon suis str. Zachary. prokMSA_id:015859 U88565 Eperythrozoon suis str. Illinois. 2.30.8.4.5.008 OTU 2 seqs prokMSA_id:015860 U82963 Haemobartonella muris str. Shizuoka. prokMSA_id:015862 U88563 Haemobartonella felis str. Florida-Ohio. 2.30.8.4.5.009 OTU 1 seq prokMSA_id:070410 AY150978 Candidatus Mycoplasma haemominutum isolate Australian no. 3 2.30.8.4.5.010 OTU 2 seqs prokMSA_id:071726 AY150974 Candidatus Mycoplasma haemominutum isolate Israel no. 1 prokMSA_id:089356 AY297712 Candidatus Mycoplasma haemominutum 2.30.8.4.5.011 OTU 1 seq prokMSA_id:087318 AY171918 Mycoplasma coccoides 2.30.8.4.5.012 OTU 1 seq prokMSA_id:097115 AY383241 Candidatus Mycoplasma haemoparvum 2.30.8.4.5.999 poor quality 8 seqs prokMSA_id:015858 AF016546 Eperythrozoon wenyonii. prokMSA_id:071768 AJ292454 ZI-5 clone ZI-5 prokMSA_id:071842 AJ292461 ZI-4 clone ZI-4 prokMSA_id:082705 AY150065 Mycoplasma haemofelis isolate Spain-1 from cat prokMSA_id:058419 AY150975 Mycoplasma haemofelis isolate Israel no. 2 prokMSA_id:058417 AY150982 Candidatus Mycoplasma haemominutum isolate UK no. 3 prokMSA_id:058416 AY150983 Candidatus Mycoplasma haemominutum isolate UK no. 4 prokMSA_id:058409 AY150986 Mycoplasma haemofelis isolate UK no. 7 2.30.8.5 M.HOMINIS_GROUP 204 seqs 2.30.8.5.1 MYCOPLASMA.MOBILE 2 seqs 2.30.8.5.1.001 OTU 1 seq prokMSA_id:042338 AF412984 Mycoplasma moatsii 2.30.8.5.1.002 OTU 1 seq prokMSA_id:015863 M24480 Mycoplasma mobile str. 163K ATCC 43663 . 2.30.8.5.2 M.HYOPNEUMONIAE_SUBGROUP 33 seqs 2.30.8.5.2.001 OTU 2 seqs prokMSA_id:033342 AF412985 Mycoplasma molare prokMSA_id:070042 AF538683 Mycoplasma molare ; -23S intergenic spacer complete ; and 23S 2.30.8.5.2.002 OTU 1 seq prokMSA_id:019256 AF412983 Mycoplasma lagogenitalium 2.30.8.5.2.003 OTU 1 seq prokMSA_id:019656 AF412979 Mycoplasma dispar 2.30.8.5.2.004 OTU 2 seqs prokMSA_id:021580 E02783 of Mycoplasma hyopneumoniae prokMSA_id:015880 Y00149 Mycoplasma hyopneumoniae str. Weybridge ATCC 27719. 2.30.8.5.2.005 OTU 3 seqs prokMSA_id:028253 AF412974 Mycoplasma collis prokMSA_id:032835 AF412976 Mycoplasma cricetuli prokMSA_id:056134 AF538681 Mycoplasma collis ; -23S intergenic spacer complete ; and 23S 2.30.8.5.2.006 OTU 5 seqs prokMSA_id:015878 AF121890 Mycoplasma hyorhinis ATCC VR-2580. prokMSA_id:042111 AF258792 Mycoplasma hyorhinis strain BTS7 rrs prokMSA_id:048180 AF258793 Mycoplasma hyorhinis rrs prokMSA_id:041299 AF258794 Mycoplasma hyorhinis rrs prokMSA_id:031894 AF412982 Mycoplasma hyorhinis 2.30.8.5.2.007 OTU 1 seq prokMSA_id:039647 AF412988 Mycoplasma sualvi 2.30.8.5.2.008 OTU 3 seqs prokMSA_id:015864 L22210 Mycoplasma flocculare str. Ms42 . prokMSA_id:015874 X62699 Mycoplasma flocculare str. Ms42 ATCC 27399 . prokMSA_id:015867 X63377 Mycoplasma flocculare str. Ms42. 2.30.8.5.2.009 OTU 1 seq prokMSA_id:015865 U44768 Mycoplasma bovoculi str. M165/69 . 2.30.8.5.2.010 OTU 1 seq prokMSA_id:015870 U44771 Mycoplasma ovipneumoniae str. Y-98 . 2.30.8.5.2.011 OTU 1 seq prokMSA_id:015872 U44770 Mycoplasma conjunctivae str. HRC/583 . 2.30.8.5.2.012 OTU 1 seq prokMSA_id:079153 AY191226 Mycoplasma gypsbengalensis strain Gb-V33 2.30.8.5.2.999 poor quality 11 seqs prokMSA_id:044198 AH001708 M.hyopneumoniae 5' end prokMSA_id:015879 M23936 Mycoplasma sualvi str. Mayfield B ATCC 33004 . prokMSA_id:015873 M23944 Mycoplasma neurolyticum str. Sabin A ATCC 19988 . prokMSA_id:015877 M24658 Mycoplasma hyorhinis str. PG42 ATCC 17981 . prokMSA_id:017413 M26018 Mycoplasma sp. putative prokMSA_id:015876 M30376 Mycoplasma hyopneumoniae. prokMSA_id:015875 U04644 Mycoplasma sualvi str. Mayfield B. prokMSA_id:015871 U04646 Mycoplasma ovipneumoniae str. Y98. prokMSA_id:015866 U04651 Mycoplasma hyopneumoniae str. J. prokMSA_id:015869 U04653 Mycoplasma flocculare str. Ms42. prokMSA_id:015868 X64727 Mycoplasma collis str. MO36. 2.30.8.5.3 M.HOMINIS_SUBGROUP 51 seqs 2.30.8.5.3.001 OTU 7 seqs prokMSA_id:028328 AF275263 Mycoplasma hominis prokMSA_id:023718 AJ002265 Mycoplasma hominis rrnB operon strain PG21 prokMSA_id:074598 AJ002266 Mycoplasma hominis rrnB operon strain DC63 prokMSA_id:019704 AJ002267 Mycoplasma hominis rrnB operon strain SC4 prokMSA_id:040026 AJ002268 Mycoplasma hominis rrnB operon strain P2 prokMSA_id:049564 AJ002269 Mycoplasma hominis rrnB operon strain 7488 prokMSA_id:015892 M96660 Mycoplasma hominis str. 183. 2.30.8.5.3.002 OTU 2 seqs prokMSA_id:015896 AF125587 Mycoplasma spumans str. PG13. prokMSA_id:059733 AF538684 Mycoplasma spumans ; -23S intergenic spacer complete ; and 23S 2.30.8.5.3.003 OTU 6 seqs prokMSA_id:018925 AF465775 Mycoplasma hyosynoviae strain M309/84 prokMSA_id:037697 AF465776 Mycoplasma hyosynoviae strain SF9317 prokMSA_id:031624 AF465777 Mycoplasma hyosynoviae strain EU4a prokMSA_id:040373 AF465778 Mycoplasma hyosynoviae strain L44 prokMSA_id:049757 AF465779 Mycoplasma hyosynoviae strain SAC63 prokMSA_id:015898 U26730 Mycoplasma hyosynoviae. 2.30.8.5.3.004 OTU 1 seq prokMSA_id:036302 AF221121 Mycoplasma elephantis isolate E42 2.30.8.5.3.005 OTU 2 seqs prokMSA_id:015900 AF125586 Mycoplasma buccale str. CH20247. prokMSA_id:039619 U83502 Mycoplasma buccale 2.30.8.5.3.006 OTU 2 seqs prokMSA_id:015887 AF125584 Mycoplasma anseris str. 1219. prokMSA_id:039995 AF125592 Mycoplasma cloacale strain 383 2.30.8.5.3.007 OTU 1 seq prokMSA_id:072086 AF125585 Mycoplasma equirhinis strain M432/72 2.30.8.5.3.008 OTU 2 seqs prokMSA_id:015901 AF125590 Mycoplasma faucium str. DC333. prokMSA_id:045906 U83663 Mycoplasma faucium 2.30.8.5.3.009 OTU 2 seqs prokMSA_id:015891 AF125593 Mycoplasma indiense str. 3T. prokMSA_id:060547 AY050170 Mycoplasma timone 2.30.8.5.3.010 OTU 1 seq prokMSA_id:067615 AF493543 Mycoplasma zalophus 2.30.8.5.3.011 OTU 7 seqs prokMSA_id:015895 AF125581 Mycoplasma arginini str. G230. prokMSA_id:071453 AF304323 Mycoplasma phocicerebrale prokMSA_id:015894 U15794 Mycoplasma arginini ATCC 25528. prokMSA_id:015884 U15796 Mycoplasma gateae ATCC 23392 . prokMSA_id:015889 U44764 Mycoplasma alkalescens str. PG51 . prokMSA_id:015886 U44769 Mycoplasma canadense str. 275c . prokMSA_id:015902 U67944 Mycoplasma auris str. UIA ATCC 51348 . 2.30.8.5.3.012 OTU 1 seq prokMSA_id:015888 AF125588 Mycoplasma subdolum str. TB. 2.30.8.5.3.013 OTU 1 seq prokMSA_id:015897 AF125591 Mycoplasma falconis str. H/T1. 2.30.8.5.3.014 OTU 1 seq prokMSA_id:015899 AF001173 Mycoplasma 'Grey Lung disease agent'. 2.30.8.5.3.015 OTU 1 seq prokMSA_id:015903 AF125589 Mycoplasma gypis str. B1/T1. 2.30.8.5.3.016 OTU 1 seq prokMSA_id:015905 AF125583 Mycoplasma salivarium str. PG20. 2.30.8.5.3.017 OTU 1 seq prokMSA_id:072462 AF304325 Mycoplasma phocae 2.30.8.5.3.018 OTU 1 seq prokMSA_id:085206 AY226323 clone DBBB-98 2.30.8.5.3.999 poor quality 11 seqs prokMSA_id:059396 AF428636 clone CRD99-58 prokMSA_id:059395 AF428653 clone CRD99-75 prokMSA_id:046499 AJ002270 Mycoplasma hominis rrnB operon strain 183 prokMSA_id:096461 AJ555128 Mycoplasma salivarium prokMSA_id:015885 M24473 Mycoplasma hominis str. PG21 ATCC 23114 . prokMSA_id:015893 M24579 Mycoplasma arginini str. G230 ATCC 23838 . prokMSA_id:015881 M24580 Mycoplasma arthritidis str. PG6 ATCC 19611 . prokMSA_id:015890 M24659 Mycoplasma orale str. CH19299 ATCC 23714 . prokMSA_id:015904 M24661 Mycoplasma salivarium str. PG20 ATCC 23064 . prokMSA_id:015883 U04650 Mycoplasma hyosynoviae str. S16. prokMSA_id:015882 U04655 Mycoplasma canadense str. 275C. 2.30.8.5.4 M.AGASSIZII_SUBGROUP 8 seqs 2.30.8.5.4.001 OTU 3 seqs prokMSA_id:015910 AF125582 Mycoplasma pulmonis str. PG34. prokMSA_id:058394 AL445565 Mycoplasma pulmonis strain UAB CTIP complete genome; segment 3/3 prokMSA_id:049947 NC_002771 Mycoplasma pulmonis complete genome 2.30.8.5.4.002 OTU 2 seqs prokMSA_id:015907 AF060821 Mycoplasma agassizii str. K120. prokMSA_id:015906 U09786 Mycoplasma agassizii str. PS6. 2.30.8.5.4.003 OTU 2 seqs prokMSA_id:093639 AY366210 Mycoplasma cheloniae strain BH29 prokMSA_id:015908 U19768 Mycoplasma sp. str. H3110. 2.30.8.5.4.004 OTU 1 seq prokMSA_id:015909 M23941 Mycoplasma pulmonis str. PG34 ATCC 19612 . 2.30.8.5.5 M.BOVIRHINIS_SUBGROUP 34 seqs 2.30.8.5.5.001 OTU 2 seqs prokMSA_id:015921 AF170102 unnamed organism. prokMSA_id:024960 AF412975 Mycoplasma columborale 2.30.8.5.5.002 OTU 1 seq prokMSA_id:028733 AF412989 Mycoplasma verecundum 2.30.8.5.5.003 OTU 2 seqs prokMSA_id:032469 AF412977 Mycoplasma crocodyli prokMSA_id:015923 U63137 Mycoplasma crocodyli str. Mohan. 2.30.8.5.5.004 OTU 1 seq prokMSA_id:069777 AF412971 Mycoplasma buteonis 2.30.8.5.5.005 OTU 2 seqs prokMSA_id:015919 AF064062 Mycoplasma gallopavonis. prokMSA_id:072545 AF412980 Mycoplasma gallopavonis 2.30.8.5.5.006 OTU 3 seqs prokMSA_id:074000 AF340023 Mycoplasma canis prokMSA_id:070899 AF412972 Mycoplasma canis prokMSA_id:015913 U73903 Mycoplasma edwardii str. PG24. 2.30.8.5.5.007 OTU 2 seqs prokMSA_id:049382 AF412969 Mycoplasma alligatoris prokMSA_id:015926 U56733 Mycoplasma lacerti str. A21JP2. 2.30.8.5.5.008 OTU 2 seqs prokMSA_id:053013 AF412978 Mycoplasma cynos prokMSA_id:071155 AF538682 Mycoplasma cynos ; -23S intergenic spacer complete ; and 23S 2.30.8.5.5.009 OTU 1 seq prokMSA_id:015912 U44766 Mycoplasma bovirhinis str. PG43 . 2.30.8.5.5.010 OTU 1 seq prokMSA_id:015916 U16759 Mycoplasma leonicaptivi ATCC 49890 . 2.30.8.5.5.011 OTU 1 seq prokMSA_id:015917 U09787 Mycoplasma felis ATCC 23391 . 2.30.8.5.5.012 OTU 1 seq prokMSA_id:015918 L08054 Mycoplasma corogypsi str. BV1 ATCC 51148 . 2.30.8.5.5.013 OTU 1 seq prokMSA_id:015920 U22013 Mycoplasma sturni str. UCMF; p170/171 ATCC 51945 . 2.30.8.5.5.014 OTU 1 seq prokMSA_id:015922 L24104 Mycoplasma gallinaceum str. DD. 2.30.8.5.5.015 OTU 1 seq prokMSA_id:015925 AF150495 Mycoplasma 94630 str. 94630. 2.30.8.5.5.016 OTU 2 seqs prokMSA_id:015928 L07757 Mycoplasma synoviae str. WVU 1853. prokMSA_id:015929 X52083 Mycoplasma synoviae str. WVU 1853. 2.30.8.5.5.017 OTU 1 seq prokMSA_id:070402 AF412973 Mycoplasma citelli 2.30.8.5.5.018 OTU 1 seq prokMSA_id:070918 AF412981 Mycoplasma glycophilum 2.30.8.5.5.019 OTU 1 seq prokMSA_id:071789 AF412970 Mycoplasma anatis 2.30.8.5.5.020 OTU 1 seq prokMSA_id:072467 AF412986 Mycoplasma mustelae 2.30.8.5.5.021 OTU 1 seq prokMSA_id:085218 AY246564 Mycoplasma sp. VJC358 ; -23S intergenic spacer region complete ; and 23S 2.30.8.5.5.999 poor quality 5 seqs prokMSA_id:015915 U04643 Mycoplasma sp. str. M209/78. prokMSA_id:015927 U04645 Mycoplasma synoviae str. WVU 1853. prokMSA_id:015914 U04654 Mycoplasma canis str. PG14. prokMSA_id:015911 U04656 Mycoplasma bovirhinis str. PG43. prokMSA_id:015924 U58504 Mycoplasma pullorum str. CKK. 2.30.8.5.6 M.HYOPHARYNGIS_SUBGROUP 3 seqs 2.30.8.5.6.001 OTU 1 seq prokMSA_id:015931 U58997 Mycoplasma hyopharyngis str. H3-6B F . 2.30.8.5.6.999 poor quality 2 seqs prokMSA_id:015932 M24581 Mycoplasma lipophilum str. MaBy ATCC 27104 . prokMSA_id:015930 U04652 Mycoplasma hyopharyngis str. 538N. 2.30.8.5.7 M.AGALACTIAE_SUBGROUP 39 seqs 2.30.8.5.7.001 OTU 26 seqs prokMSA_id:015940 AF010477 Mycoplasma agalactiae str. Izat 17/95-96. prokMSA_id:015937 AF092935 Mycoplasma bovis str. JTCL1. prokMSA_id:074234 AF332743 Mycoplasma agalactiae strain M133/87 prokMSA_id:051117 AF332744 Mycoplasma agalactiae strain 847.121 prokMSA_id:073703 AF332745 Mycoplasma agalactiae strain 396/12 prokMSA_id:071755 AF332746 Mycoplasma agalactiae strain 5725 prokMSA_id:074108 AF332747 Mycoplasma agalactiae strain 17 prokMSA_id:073746 AF332748 Mycoplasma agalactiae strain L9 prokMSA_id:071854 AF332749 Mycoplasma agalactiae strain 25/95 prokMSA_id:070634 AF332750 Mycoplasma agalactiae strain 4136/96 no 2 prokMSA_id:070015 AF332751 Mycoplasma agalactiae strain 35 prokMSA_id:070591 AF332752 Mycoplasma bovis strain M148/88 prokMSA_id:073088 AF332753 Mycoplasma bovis strain MC3386 prokMSA_id:072350 AF332754 Mycoplasma bovis strain 1067 prokMSA_id:072986 AF332755 Mycoplasma bovis strain L22 prokMSA_id:017045 AF332756 Mycoplasma bovis strain 120/81 prokMSA_id:073175 AF332757 Mycoplasma bovis strain 422/88 prokMSA_id:070874 AJ419900 Mycoplasma agalactiae strain PG2 prokMSA_id:072539 AJ419901 Mycoplasma agalactiae strain 6968 prokMSA_id:071989 AJ419902 Mycoplasma agalactiae strain 209 prokMSA_id:025799 AJ419903 Mycoplasma agalactiae strain 5632 prokMSA_id:031572 AJ419904 Mycoplasma agalactiae strain 4212 prokMSA_id:071393 AJ419905 Mycoplasma bovis strain PG45 prokMSA_id:015935 U02968 Mycoplasma bovis str. Donetta . prokMSA_id:015933 U44763 Mycoplasma agalactiae str. PG2 . prokMSA_id:015942 U44767 Mycoplasma bovis str. Donetta . 2.30.8.5.7.002 OTU 2 seqs prokMSA_id:019193 AF221117 Mycoplasma opalescens isolate MH5408 prokMSA_id:071629 AF538961 Mycoplasma opalescens complete ; and 23S 2.30.8.5.7.003 OTU 3 seqs prokMSA_id:015945 AF013996 Mycoplasma spermatophilum str. NC011720. prokMSA_id:019645 AF221119 Mycoplasma spermatophilum isolate AH159 prokMSA_id:015936 AJ000494 Mycoplasma sp. str. Patient#88. 2.30.8.5.7.004 OTU 2 seqs prokMSA_id:047885 AF221116 Mycoplasma maculosum isolate PG15 prokMSA_id:015944 U16760 Mycoplasma leopharyngis ATCC 49889 . 2.30.8.5.7.005 OTU 3 seqs prokMSA_id:015938 AF013997 Mycoplasma primatum str. 243. prokMSA_id:015939 AF013998 Mycoplasma primatum str. Navel. prokMSA_id:048246 AF221118 Mycoplasma primatum isolate HRC292 2.30.8.5.7.006 OTU 1 seq prokMSA_id:015941 U67943 Mycoplasma adleri str. G145 ATCC 27948 . 2.30.8.5.7.007 OTU 1 seq prokMSA_id:015943 U15795 Mycoplasma felifaucium ATCC 43428 . 2.30.8.5.7.999 poor quality 1 seq prokMSA_id:015934 M24290 Mycoplasma agalactiae str. PG2 NCTC 10123 . 2.30.8.5.8 M.MELEAGRIDIS_SUBGROUP 34 seqs 2.30.8.5.8.001 OTU 1 seq prokMSA_id:019295 AF221115 Mycoplasma lipofaciens isolate R171 2.30.8.5.8.002 OTU 17 seqs prokMSA_id:019819 AF465628 Mycoplasma bovigenitalium strain 2001-035TU prokMSA_id:074382 AY121094 Mycoplasma sp. 'ovine/caprine serogroup 11' strain 2D prokMSA_id:062446 AY121095 Mycoplasma bovigenitalium isolate 434/81 prokMSA_id:070186 AY121096 Mycoplasma bovigenitalium isolate 57B00 prokMSA_id:055778 AY121097 Mycoplasma bovigenitalium isolate 988/80 prokMSA_id:062449 AY121098 Mycoplasma bovigenitalium strain PG 11 prokMSA_id:072958 AY121099 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 122SR99 prokMSA_id:070063 AY121100 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 126SR99 prokMSA_id:071679 AY121101 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 129SR99 prokMSA_id:071448 AY121102 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 12SR98 prokMSA_id:062442 AY121103 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 3SR99 prokMSA_id:073778 AY121104 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 48SR98 prokMSA_id:062437 AY121105 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 48SR99 prokMSA_id:062440 AY121106 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 52SR98 prokMSA_id:062438 AY121107 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 52SR99 prokMSA_id:073988 AY121108 Mycoplasma sp. 'ovine/caprine serogroup 11' isolate 95SR99 prokMSA_id:072631 AY121109 Mycoplasma bovigenitalium isolate 398/87 2.30.8.5.8.003 OTU 1 seq prokMSA_id:071570 AF221113 Mycoplasma columbinum isolate MMP-1 2.30.8.5.8.004 OTU 1 seq prokMSA_id:023690 AF221120 Mycoplasma equigenitalium isolate T37 2.30.8.5.8.005 OTU 2 seqs prokMSA_id:015948 AF064063 Mycoplasma iners. prokMSA_id:050081 AF221114 Mycoplasma iners isolate PG30 2.30.8.5.8.006 OTU 1 seq prokMSA_id:060702 AF527624 Mycoplasma sp. HRC689 /23S intergenic spacer complete ; and 23S 2.30.8.5.8.007 OTU 1 seq prokMSA_id:015947 L24106 Mycoplasma meleagridis str. 17529. 2.30.8.5.8.008 OTU 1 seq prokMSA_id:015949 L24105 Mycoplasma gallinarum str. PG16. 2.30.8.5.8.009 OTU 1 seq prokMSA_id:015953 U16323 Mycoplasma simbae ATCC 49888 . 2.30.8.5.8.010 OTU 1 seq prokMSA_id:015954 M24582 Mycoplasma californicum str. ST-6 ATCC 33461 . 2.30.8.5.8.011 OTU 1 seq prokMSA_id:070343 AF221112 Mycoplasma columbinasale isolate 694 2.30.8.5.8.012 OTU 1 seq prokMSA_id:072219 AF304324 Mycoplasma phocirhinis 2.30.8.5.8.013 OTU 1 seq prokMSA_id:073061 AF221111 Mycoplasma caviae isolate G122 2.30.8.5.8.999 poor quality 4 seqs prokMSA_id:015951 AF031374 Mycoplasma fermentans str. PG18 strain. prokMSA_id:015950 M24289 Mycoplasma fermentans str. PG18 ATCC 19989 . prokMSA_id:015952 M24291 Mycoplasma bovigenitalium str. PG11 ATCC 19852 . prokMSA_id:015946 U04649 Mycoplasma meleagridis str. 17529. 2.30.9 CLOSTRIDIUM_AND_RELATIVES 2070 seqs 2.30.9.1 C.LEPTUM_GROUP 1385 seqs 2.30.9.1.1 C.THERMOCELLUM_SUBGROUP 339 seqs 2.30.9.1.1.001 OTU 1 seq prokMSA_id:016692 AB034012 rumen 3C0d-12 2.30.9.1.1.002 OTU 1 seq prokMSA_id:016796 AF371819 clone p-3230-42A2 2.30.9.1.1.003 OTU 1 seq prokMSA_id:016925 AJ318164 firmicute clone BIri47 2.30.9.1.1.004 OTU 1 seq prokMSA_id:017027 AJ249095 SHA-61 2.30.9.1.1.005 OTU 1 seq prokMSA_id:017384 AB034077 rumen 5C3d-17 2.30.9.1.1.006 OTU 1 seq prokMSA_id:017517 AF385563 sp. oral clone BU014 2.30.9.1.1.007 OTU 1 seq prokMSA_id:017598 AF371814 clone p-3131-SwA5 2.30.9.1.1.008 OTU 1 seq prokMSA_id:017822 AF371822 clone p-1014-a5 2.30.9.1.1.009 OTU 1 seq prokMSA_id:018115 AJ229232 from anoxic bulk soil clone BSV89 2.30.9.1.1.010 OTU 1 seq prokMSA_id:018935 AJ408137 equine intestinal sp. DW12 clone DW12 2.30.9.1.1.011 OTU 1 seq prokMSA_id:019341 AJ408169 equine intestinal sp. ML23 clone ML23 2.30.9.1.1.012 OTU 2 seqs prokMSA_id:019412 AF371812 clone p-1956-962-3 prokMSA_id:023757 AF371813 clone p-1940-962-3 2.30.9.1.1.013 OTU 1 seq prokMSA_id:021032 AF401538 clone g3H3 2.30.9.1.1.014 OTU 1 seq prokMSA_id:022115 AF371824 clone p-2406-55G5 2.30.9.1.1.015 OTU 2 seqs prokMSA_id:015993 AB009183 clone RFN25. prokMSA_id:022794 AB056642 fiber-attaching rumen clone:SY28 2.30.9.1.1.016 OTU 3 seqs prokMSA_id:035019 AJ229191 from anoxic bulk soil clone BSV29 prokMSA_id:022883 AJ229192 from anoxic bulk soil clone BSV30 prokMSA_id:050695 AJ229193 from anoxic bulk soil clone BSV31 2.30.9.1.1.017 OTU 1 seq prokMSA_id:071279 AF317359 feedlot manure A84 2.30.9.1.1.018 OTU 4 seqs prokMSA_id:029684 AF407395 clone RB9C5 prokMSA_id:024217 AF407398 clone RA13C1 prokMSA_id:039009 AF407408 clone RB13C1 prokMSA_id:039239 AF407415 clone RB13C12 2.30.9.1.1.019 OTU 3 seqs prokMSA_id:024626 AY050580 clone GOUTA8 prokMSA_id:050158 AY050596 clone GOUTB10 prokMSA_id:024800 AY050597 clone GOUTB13 2.30.9.1.1.020 OTU 1 seq prokMSA_id:024765 AB034027 rumen 4C0d-14 2.30.9.1.1.021 OTU 1 seq prokMSA_id:025896 AB031657 gram-positive TIHP368-67 2.30.9.1.1.022 OTU 1 seq prokMSA_id:026721 AB034047 rumen 5C0d-14 2.30.9.1.1.023 OTU 1 seq prokMSA_id:069664 AF481208 Clostridiales oral clone MCE3_9 E1 2.30.9.1.1.024 OTU 1 seq prokMSA_id:027881 AF407403 clone RA13C3 2.30.9.1.1.025 OTU 1 seq prokMSA_id:028666 AF201985 human oral A35 2.30.9.1.1.026 OTU 1 seq prokMSA_id:028714 AJ408223 equine intestinal sp. PL15 clone PL15 2.30.9.1.1.027 OTU 1 seq prokMSA_id:029174 AF401537 clone g3P17 2.30.9.1.1.028 OTU 1 seq prokMSA_id:029311 AB078861 Clostridiaceae str. 80Wd 2.30.9.1.1.029 OTU 1 seq prokMSA_id:029902 AB034030 rumen 4C0d-17 2.30.9.1.1.030 OTU 2 seqs prokMSA_id:049948 AF401533 clone g3W3 prokMSA_id:030916 AF401536 clone g3R1 2.30.9.1.1.031 OTU 1 seq prokMSA_id:031444 AF323768 clone BA143 complete 2.30.9.1.1.032 OTU 1 seq prokMSA_id:032177 AF286038 Saltmarsh clone LCP-84 2.30.9.1.1.033 OTU 1 seq prokMSA_id:032194 AB034038 rumen 5C0d-4 2.30.9.1.1.034 OTU 1 seq prokMSA_id:033987 AF371829 clone p-837-a5 2.30.9.1.1.035 OTU 1 seq prokMSA_id:035027 AF401541 clone g3B5 2.30.9.1.1.036 OTU 1 seq prokMSA_id:035135 AF401540 clone g3Br5 2.30.9.1.1.037 OTU 1 seq prokMSA_id:035260 AF371832 clone p-2531-18B5 2.30.9.1.1.038 OTU 2 seqs prokMSA_id:045626 AF371817 clone p-1086-a5 prokMSA_id:035836 AF371818 clone p-85-a5 2.30.9.1.1.039 OTU 1 seq prokMSA_id:036705 AF371825 clone p-52-a5 2.30.9.1.1.040 OTU 1 seq prokMSA_id:071644 AF317381 feedlot manure B78 2.30.9.1.1.041 OTU 1 seq prokMSA_id:037933 AF407407 clone RA13C8 2.30.9.1.1.042 OTU 1 seq prokMSA_id:038025 AF401535 clone g3S5 2.30.9.1.1.043 OTU 1 seq prokMSA_id:039605 AJ229219 from anoxic bulk soil clone BSV75 2.30.9.1.1.044 OTU 1 seq prokMSA_id:040486 AJ408070 equine intestinal sp. CL36 clone CL36 2.30.9.1.1.045 OTU 1 seq prokMSA_id:040882 AJ408204 equine intestinal sp. MW17 clone MW17 2.30.9.1.1.046 OTU 1 seq prokMSA_id:041245 AF280831 tbr4-15 2.30.9.1.1.047 OTU 2 seqs prokMSA_id:053823 AJ249110 SHA-219 prokMSA_id:065412 AJ278163 low G+C gram-positive SHD-209 2.30.9.1.1.048 OTU 1 seq prokMSA_id:055772 AF507888 low G+C Gram-positive clone ML635J-65 2.30.9.1.1.049 OTU 2 seqs prokMSA_id:042029 AB034045 rumen 5C0d-12 prokMSA_id:089043 AB113735 clone:OAB50 2.30.9.1.1.050 OTU 1 seq prokMSA_id:042636 AF371826 clone p-208-o5 2.30.9.1.1.051 OTU 1 seq prokMSA_id:042707 AJ408261 equine intestinal sp. PW15 clone PW15 2.30.9.1.1.052 OTU 1 seq prokMSA_id:043660 AF424412 low G+C Gram-positive MERTZ_2CM_209 2.30.9.1.1.053 OTU 1 seq prokMSA_id:044398 AF276458 clone RFLP 50E 2.30.9.1.1.054 OTU 1 seq prokMSA_id:044693 AJ418058 clone L10-14 2.30.9.1.1.055 OTU 1 seq prokMSA_id:045074 AF371828 clone p-3261-42A2 2.30.9.1.1.056 OTU 1 seq prokMSA_id:045715 AB034127 rumen 4C28d-18 2.30.9.1.1.057 OTU 1 seq prokMSA_id:047100 AF371820 clone p-1565-b5 2.30.9.1.1.058 OTU 2 seqs prokMSA_id:068943 AF407388 clone RA9C1 prokMSA_id:048313 AF407399 clone RA13C2 2.30.9.1.1.059 OTU 2 seqs prokMSA_id:052180 AF371810 clone p-1542-b5 prokMSA_id:048734 AF371811 clone p-2679-65A5 2.30.9.1.1.060 OTU 1 seq prokMSA_id:048899 AF371815 clone p-1062-a5 2.30.9.1.1.061 OTU 1 seq prokMSA_id:049406 AF371816 clone p-3188-SwA-3 2.30.9.1.1.062 OTU 1 seq prokMSA_id:050120 AJ229216 from anoxic bulk soil clone BSV72 2.30.9.1.1.063 OTU 1 seq prokMSA_id:052211 AF371808 clone p-1772-c3 2.30.9.1.1.065 OTU 1 seq prokMSA_id:053642 Y18180 Clostridium thermosuccinogenes strain DSM 5807 2.30.9.1.1.066 OTU 1 seq prokMSA_id:053929 AF371827 clone p-3024-SwA5 2.30.9.1.1.067 OTU 1 seq prokMSA_id:059826 AY133360 clone BB2_90 2.30.9.1.1.068 OTU 1 seq prokMSA_id:062641 AF515500 clone 29D19 2.30.9.1.1.069 OTU 2 seqs prokMSA_id:062672 AF507890 low G+C Gram-positive clone ML635J-38 prokMSA_id:062670 AF507891 low G+C Gram-positive clone ML635J-14 2.30.9.1.1.070 OTU 1 seq prokMSA_id:062681 AF507880 low G+C Gram-positive clone ML635J-11 2.30.9.1.1.071 OTU 1 seq prokMSA_id:063236 AF523991 clone FW105 2.30.9.1.1.072 OTU 1 seq prokMSA_id:063296 AF523923 clone RCP2-43 2.30.9.1.1.073 OTU 1 seq prokMSA_id:067681 AF429382 CCAJG163 2.30.9.1.1.074 OTU 1 seq prokMSA_id:015955 L35517 Bacteroides cellulosolvens ATCC 35603 . 2.30.9.1.1.075 OTU 1 seq prokMSA_id:015956 AF050583 clone WCHA1-45. 2.30.9.1.1.077 OTU 5 seqs prokMSA_id:015977 AB011057 Clostridium josui str. III FERM P-9684 . prokMSA_id:053363 AF401534 clone g3So4 prokMSA_id:015961 AJ229250 Clostridium FCB90-2 str. FCB90-2. prokMSA_id:015957 X71852 Clostridium papyrosolvens ATCC 35413 . prokMSA_id:015962 Y15986 Clostridium sp. str. RCel1. 2.30.9.1.1.078 OTU 2 seqs prokMSA_id:015959 AJ229248 Clostridium FCB45 str. FCB45. prokMSA_id:015960 AJ229249 Clostridium FCG90-1 str. FCB90-1. 2.30.9.1.1.079 OTU 2 seqs prokMSA_id:015963 X71854 Clostridium termitidis DSM 5396 . prokMSA_id:015980 X71856 Clostridium cellobioparum DSM 1351 . 2.30.9.1.1.080 OTU 1 seq prokMSA_id:015969 X71846 Clostridium aldrichii DSM 6159 . 2.30.9.1.1.081 OTU 3 seqs prokMSA_id:016005 AB009181 clone RFN23. prokMSA_id:090007 AB113685 clone:AAB50 prokMSA_id:015970 AF001719 clone RC38. 2.30.9.1.1.082 OTU 2 seqs prokMSA_id:015971 AF001739 clone RF6. prokMSA_id:015973 AF001765 clone RF34. 2.30.9.1.1.083 OTU 1 seq prokMSA_id:015972 AF001743 clone RF10. 2.30.9.1.1.084 OTU 1 seq prokMSA_id:015974 AB009186 clone RFN28. 2.30.9.1.1.085 OTU 1 seq prokMSA_id:015975 AB009220 clone RFN72. 2.30.9.1.1.086 OTU 1 seq prokMSA_id:015976 AB015268 str. JTB32. 2.30.9.1.1.087 OTU 1 seq prokMSA_id:015981 AF018555 clone JW26. 2.30.9.1.1.088 OTU 1 seq prokMSA_id:015982 AB009228 clone RFN80. 2.30.9.1.1.089 OTU 2 seqs prokMSA_id:015989 L09173 Clostridium thermocellum DSM 1237 . prokMSA_id:015983 NONE Clostridium thermocellum. 2.30.9.1.1.090 OTU 4 seqs prokMSA_id:090448 AB113678 clone:AAB42 prokMSA_id:089607 AB113681 clone:AAB45 prokMSA_id:015984 AF001697 clone RC4. prokMSA_id:015990 AF001733 clone RC31. 2.30.9.1.1.091 OTU 1 seq prokMSA_id:015986 AF050629 clone WsCH8. 2.30.9.1.1.092 OTU 1 seq prokMSA_id:015991 AF018551 clone JW21. 2.30.9.1.1.093 OTU 1 seq prokMSA_id:015992 AB009175 clone RFN16. 2.30.9.1.1.094 OTU 1 seq prokMSA_id:015994 AB009218 clone RFN70. 2.30.9.1.1.095 OTU 1 seq prokMSA_id:015995 AB009227 clone RFN8. 2.30.9.1.1.096 OTU 2 seqs prokMSA_id:015999 L35515 Acetivibrio cellulolyticus str. BAS ATCC 35928 . prokMSA_id:016007 L35516 Acetivibrio cellulolyticus str. CD2 ATCC 33288 . 2.30.9.1.1.097 OTU 1 seq prokMSA_id:016000 AF001762 clone RF30. 2.30.9.1.1.098 OTU 1 seq prokMSA_id:016001 AF050580 clone WCHB1-21. 2.30.9.1.1.099 OTU 1 seq prokMSA_id:016002 AF018558 clone JW32. 2.30.9.1.1.100 OTU 1 seq prokMSA_id:016003 AF018562 clone 12-110. 2.30.9.1.1.101 OTU 1 seq prokMSA_id:016004 AF018564 clone 12-124. 2.30.9.1.1.102 OTU 1 seq prokMSA_id:016006 AB009189 clone RFN33. 2.30.9.1.1.103 OTU 1 seq prokMSA_id:069942 AF371714 clone p-4154-6Wa5 2.30.9.1.1.104 OTU 1 seq prokMSA_id:070137 AF371809 clone p-656-a5 2.30.9.1.1.105 OTU 1 seq prokMSA_id:070302 AF538854 Clostridiales oral clone P4PB_122 P3 2.30.9.1.1.106 OTU 1 seq prokMSA_id:071095 AF317372 feedlot manure B4 2.30.9.1.1.107 OTU 1 seq prokMSA_id:072439 AF287779 Firmicutes sp. oral clone F058 2.30.9.1.1.108 OTU 1 seq prokMSA_id:074480 AB034126 rumen 4C28d-12 2.30.9.1.1.109 OTU 1 seq prokMSA_id:074679 AJ249104 SHA-33 2.30.9.1.1.110 OTU 1 seq prokMSA_id:077360 AF482434 clone R1p16 2.30.9.1.1.111 OTU 1 seq prokMSA_id:077496 AF482449 clone R6b7 2.30.9.1.1.112 OTU 1 seq prokMSA_id:077620 AB089024 Clostridiaceae clone:Rs-K07 2.30.9.1.1.113 OTU 1 seq prokMSA_id:077727 AB088977 Clostridiaceae clone:Rs-J39 2.30.9.1.1.114 OTU 1 seq prokMSA_id:077738 AB088982 Clostridiaceae clone:Rs-M05 2.30.9.1.1.115 OTU 1 seq prokMSA_id:077963 AB089011 Clostridiaceae clone:Rs-K46 2.30.9.1.1.116 OTU 1 seq prokMSA_id:078022 AB089023 Clostridiaceae clone:Rs-G02 2.30.9.1.1.117 OTU 1 seq prokMSA_id:078088 AB089020 Clostridiaceae clone:Rs-D81 2.30.9.1.1.118 OTU 1 seq prokMSA_id:078177 AB089021 Clostridiaceae clone:Rs-P61 2.30.9.1.1.119 OTU 1 seq prokMSA_id:078199 AB088976 Clostridiaceae clone:Rs-H83 2.30.9.1.1.120 OTU 1 seq prokMSA_id:078275 AB089005 Clostridiaceae clone:Rs-J56 2.30.9.1.1.121 OTU 1 seq prokMSA_id:078286 AB089025 Clostridiaceae clone:Rs-G27 2.30.9.1.1.122 OTU 1 seq prokMSA_id:078379 AB089022 Clostridiaceae clone:Rs-M93 2.30.9.1.1.123 OTU 1 seq prokMSA_id:078383 AB089042 Clostridiaceae clone:Rs-N85 2.30.9.1.1.124 OTU 2 seqs prokMSA_id:080630 AY161243 clone SSADM_EF7 prokMSA_id:094691 AY386235 clone Dpcom145 2.30.9.1.1.125 OTU 1 seq prokMSA_id:081069 AB100474 Clostridiaceae clone: Rs-057 2.30.9.1.1.126 OTU 1 seq prokMSA_id:081208 AB093546 Clostridium sp. JC3 2.30.9.1.1.127 OTU 1 seq prokMSA_id:081242 AB100467 Clostridiaceae clone: Rs-L37 2.30.9.1.1.128 OTU 1 seq prokMSA_id:081255 AB100470 Clostridiaceae clone: Rs-092 2.30.9.1.1.129 OTU 1 seq prokMSA_id:081276 AY187485 clone SC51 2.30.9.1.1.130 OTU 1 seq prokMSA_id:081318 AB100471 Clostridiaceae clone: Rs-066 2.30.9.1.1.131 OTU 1 seq prokMSA_id:081326 AB100466 Clostridiaceae clone: Rs-L02 2.30.9.1.1.132 OTU 1 seq prokMSA_id:081946 AB100475 Clostridiaceae clone: Rs-L36 2.30.9.1.1.133 OTU 1 seq prokMSA_id:082036 AB100478 Clostridiaceae clone: Rs-056 2.30.9.1.1.134 OTU 1 seq prokMSA_id:082046 AB100468 Clostridiaceae clone: Rs-L38 2.30.9.1.1.135 OTU 1 seq prokMSA_id:082058 AB100493 Clostridiaceae clone: Rs-060 2.30.9.1.1.136 OTU 1 seq prokMSA_id:082313 AB100472 Clostridiaceae clone: Rs-028 2.30.9.1.1.137 OTU 1 seq prokMSA_id:082466 AY214179 clone ZZ12C1 2.30.9.1.1.138 OTU 1 seq prokMSA_id:082486 AY244958 rumen clone BS4 2.30.9.1.1.139 OTU 1 seq prokMSA_id:083028 AY231340 clone ER2_15 2.30.9.1.1.140 OTU 1 seq prokMSA_id:083170 AY244961 rumen clone BS7 2.30.9.1.1.141 OTU 1 seq prokMSA_id:084521 AB092863 clone:ALU21 2.30.9.1.1.142 OTU 1 seq prokMSA_id:084819 AB092862 clone:ALU20 2.30.9.1.1.143 OTU 1 seq prokMSA_id:085107 AB092864 clone:ALU22 2.30.9.1.1.144 OTU 1 seq prokMSA_id:085109 AY228698 clone SSE6 2.30.9.1.1.145 OTU 1 seq prokMSA_id:085181 AY231314 clone ER1_14 2.30.9.1.1.146 OTU 1 seq prokMSA_id:085248 AB092866 clone:ALU24 2.30.9.1.1.147 OTU 1 seq prokMSA_id:085611 AB092895 clone:AHU10 2.30.9.1.1.148 OTU 1 seq prokMSA_id:085728 AB092865 clone:ALU23 2.30.9.1.1.149 OTU 1 seq prokMSA_id:086143 AB092875 clone:ALU33 2.30.9.1.1.150 OTU 1 seq prokMSA_id:088057 AY311728 clone YRCE20 2.30.9.1.1.151 OTU 1 seq prokMSA_id:090398 AY315332 rumen clone JRCJ60 2.30.9.1.1.152 OTU 1 seq prokMSA_id:091505 AY344433 clone L10-92 2.30.9.1.1.153 OTU 1 seq prokMSA_id:091551 AY338358 clone BREC_50 2.30.9.1.1.154 OTU 1 seq prokMSA_id:091584 AY345513 clone W4A-A09 2.30.9.1.1.155 OTU 1 seq prokMSA_id:092062 AY343161 clone REC1M_5 2.30.9.1.1.156 OTU 3 seqs prokMSA_id:092377 AY343176 clone REC6M_22 prokMSA_id:092932 AY343177 clone REC6M_46 prokMSA_id:093059 AY343209 clone REC6M_2 2.30.9.1.1.157 OTU 1 seq prokMSA_id:092584 AY343175 clone REC6M_87 2.30.9.1.1.158 OTU 1 seq prokMSA_id:092737 AY343159 clone REC1M_62 2.30.9.1.1.159 OTU 1 seq prokMSA_id:093002 AY343172 clone REC1M_24 2.30.9.1.1.160 OTU 1 seq prokMSA_id:094789 AY368596 clone nc-08 2.30.9.1.1.161 OTU 1 seq prokMSA_id:095232 AY160835 clone COB P4-7 2.30.9.1.1.162 OTU 2 seqs prokMSA_id:097986 AY330124 Clostridium sp. clone AC020 prokMSA_id:095297 AY330125 Clostridium sp. clone AC033 2.30.9.1.1.163 OTU 2 seqs prokMSA_id:097132 AY330128 Clostridium sp. clone AC065 prokMSA_id:096086 AY330130 Clostridium sp. clone MC049 2.30.9.1.1.164 OTU 1 seq prokMSA_id:096836 AY160836 clone COB P5-21 2.30.9.1.1.165 OTU 1 seq prokMSA_id:097301 AY383733 str. Rauti 2.30.9.1.1.166 OTU 1 seq prokMSA_id:097321 AY239456 clone rc2-183 complete 2.30.9.1.1.167 OTU 1 seq prokMSA_id:097949 AY160832 clone COB P5-14 2.30.9.1.1.999 poor quality 139 seqs prokMSA_id:058720 AB080851 human intestinal clone:JW2F12 prokMSA_id:058722 AB080852 human intestinal clone:JW2B4 prokMSA_id:058704 AB080879 human intestinal clone:JW1B2 prokMSA_id:058703 AB080881 human intestinal clone:JW1H11 prokMSA_id:087393 AB099777 clone: OLDB-F4 prokMSA_id:087464 AB099778 clone: OLDB-C2 prokMSA_id:087874 AB099780 clone: OLDC-A2 prokMSA_id:086703 AB099781 clone: OLDC-A1 prokMSA_id:087659 AB099782 clone: OLDA-H9 prokMSA_id:087222 AB099784 clone: OLDA-F7 prokMSA_id:087337 AB099786 clone: OLDA-C7 prokMSA_id:095022 AB120811 Gram-positive clone:MC41E05 prokMSA_id:094519 AB120812 Gram-positive clone:MC81A06 prokMSA_id:094914 AB120813 Gram-positive clone:MC81B01 prokMSA_id:015967 AF020429 Clostridium hungatei str. AD ATCC 700212. prokMSA_id:015968 AF020430 Clostridium hungatei str. B3B ATCC 700213. prokMSA_id:015985 AF050628 clone WsCH5. prokMSA_id:046449 AF211211 rumen 635cARRO prokMSA_id:033328 AF211298 low G+C gram positive MT38 prokMSA_id:022098 AF218602 rumen jw11RRI prokMSA_id:029336 AF293906 rumen clone 4 prokMSA_id:020672 AF293912 rumen clone 10 prokMSA_id:031232 AF293936 rumen clone 34 prokMSA_id:024113 AF293939 rumen clone 37 prokMSA_id:020447 AF293940 rumen clone 38 prokMSA_id:043464 AF295759 isolate RFLP 49 prokMSA_id:070290 AF317360 feedlot manure A9 prokMSA_id:071808 AF317383 feedlot manure B81 prokMSA_id:041166 AF320297 SAB reactor band 2 prokMSA_id:041639 AF376189 ckncm285-c8h6 prokMSA_id:038633 AF376327 ckncm094-B412.1A3 prokMSA_id:046085 AF376344 ckncm111-B52.E4 prokMSA_id:022690 AF376413 ckncm180-F3M.2F7 prokMSA_id:049885 AF376420 ckncm187-F3M.H12 prokMSA_id:034806 AF376429 ckncm196-F4M.1B11 prokMSA_id:037144 AF388319 clone Ac75 prokMSA_id:046146 AF395321 isopod gut clone RKPsT prokMSA_id:021468 AF429070 clone CR99-7-36 prokMSA_id:061093 AF530296 clone cadhufec008h7 prokMSA_id:069746 AF544848 Gram-positive clone D1C-10 prokMSA_id:071255 AF544867 Gram-positive clone D1C-80 prokMSA_id:069610 AF544960 low G+C Gram-positive clone 7-7-1 prokMSA_id:020155 AJ241768 microorganism clone Cow22 prokMSA_id:032675 AJ241777 microorganism clone Cow36 prokMSA_id:051938 AJ241781 microorganism clone Cow40 prokMSA_id:055018 AJ241782 microorganism clone Cow41 prokMSA_id:052551 AJ287707 low G+C Gram-positive 98ev prokMSA_id:019839 AJ289221 RSD5 prokMSA_id:025186 AJ410280 Clostridium thermocellum strain EVA1 prokMSA_id:057270 AJ518215 clone Mul2P1-84 prokMSA_id:057245 AJ518254 clone Mul2P2-69 prokMSA_id:056998 AJ518573 clone Qui4P2-28 prokMSA_id:056294 AJ518635 clone Sai1P1-7 prokMSA_id:082243 AJ549101 clone E100 prokMSA_id:045261 AY006536 rumen prokMSA_id:030248 AY006547 rumen prokMSA_id:055579 AY006548 rumen prokMSA_id:045226 AY006567 rumen prokMSA_id:025999 AY006637 rumen prokMSA_id:017172 AY006700 rumen prokMSA_id:042617 AY006702 rumen prokMSA_id:032946 AY006708 rumen prokMSA_id:029252 AY006717 rumen prokMSA_id:025990 AY006790 rumen prokMSA_id:024570 AY006818 rumen prokMSA_id:045109 AY006848 rumen prokMSA_id:041826 AY013654 Banisveld landfill BVB24a prokMSA_id:032421 AY013656 Banisveld landfill BVB36a prokMSA_id:038575 AY038499 firmicute clone CD4G2 prokMSA_id:086087 AY092173 clone AF50 prokMSA_id:085833 AY092273 clone BM61 prokMSA_id:085526 AY092274 clone BM124 prokMSA_id:083834 AY092275 clone BM77 prokMSA_id:086534 AY092276 clone BM62 prokMSA_id:084245 AY092277 clone BM2 prokMSA_id:083591 AY092278 clone BM106 prokMSA_id:085844 AY092279 clone BM121 prokMSA_id:084041 AY092281 clone BM15 prokMSA_id:082817 AY092282 clone BM41 prokMSA_id:085633 AY092283 clone BM47 prokMSA_id:084926 AY092284 clone BM83 prokMSA_id:083712 AY092285 clone BM97 prokMSA_id:084961 AY092286 clone BM81 prokMSA_id:085914 AY092287 clone BM42 prokMSA_id:084644 AY092288 clone BM101 prokMSA_id:083018 AY092289 clone BM126 prokMSA_id:084977 AY092290 clone BM82 prokMSA_id:085038 AY092291 clone BM112 prokMSA_id:083580 AY092292 clone BM119 prokMSA_id:085127 AY092293 clone BM109 prokMSA_id:084363 AY092294 clone BM150 prokMSA_id:083756 AY092297 clone BM104 prokMSA_id:084276 AY092298 clone BM159 prokMSA_id:084482 AY092299 clone BM138 prokMSA_id:083950 AY092300 clone BM134 prokMSA_id:082764 AY092302 clone BF90 prokMSA_id:086225 AY092303 clone BI177 prokMSA_id:084939 AY092304 clone BI8 prokMSA_id:086630 AY092305 clone BI180 prokMSA_id:085154 AY092323 clone BM117 prokMSA_id:066878 AY096133 clone M1-54 prokMSA_id:059827 AY133359 clone BB2_78 prokMSA_id:072829 AY143781 Bacteroides sp. clone Pr49 prokMSA_id:095659 AY160794 clone COB P5-20 prokMSA_id:095811 AY160829 clone COB P4-23 prokMSA_id:098118 AY160831 clone COB P5-26 prokMSA_id:098306 AY160834 clone COB P3-30 prokMSA_id:082440 AY187439 clone SA129 prokMSA_id:081728 AY187496 clone SC100 prokMSA_id:096276 AY239435 clone rc2-9 complete prokMSA_id:097568 AY239457 clone rc3-192 complete prokMSA_id:089045 AY311607 clone YRCA17 prokMSA_id:088341 AY311644 clone YRCC06 prokMSA_id:089706 AY311654 clone YRCC26 prokMSA_id:088981 AY311667 clone YRCC46 prokMSA_id:088267 AY311682 clone YRCD08 prokMSA_id:089715 AY311692 clone YRCD27 prokMSA_id:088167 AY311723 clone YRCE14 prokMSA_id:090566 AY311739 clone YRCE38 prokMSA_id:089104 AY311744 clone YRCE46 prokMSA_id:088470 AY311756 clone YRCE59 prokMSA_id:090650 AY311769 clone YRCF10 prokMSA_id:095800 AY422343 Anaerobic U3/P-2 prokMSA_id:024507 U58218 low G+C gram-positive small subunit prokMSA_id:027953 U58219 low G+C gram-positive small subunit prokMSA_id:039936 U58223 low G+C gram-positive small subunit prokMSA_id:015987 U68596 clone M9. prokMSA_id:015964 U68601 clone M14. prokMSA_id:015978 U68607 clone M20. prokMSA_id:015958 U68614 clone M28. prokMSA_id:015996 U68617 clone M31. prokMSA_id:015965 U68628 clone M48. prokMSA_id:015988 U68629 clone M49. prokMSA_id:015966 U68634 clone M61. prokMSA_id:046352 U81741 clone vadinHB44 prokMSA_id:015998 X71847 Clostridium cellulolyticum ATCC 35319 . prokMSA_id:015997 X78636 clone SMK197. prokMSA_id:015979 X91441 clone A18p. prokMSA_id:052406 Y13415 strain mr34C 2.30.9.1.2 C.THERMOLACTICUM_SUBGROUP 37 seqs 2.30.9.1.2.001 OTU 1 seq prokMSA_id:019380 AF317384 feedlot manure B82 2.30.9.1.2.002 OTU 8 seqs prokMSA_id:040758 AF266461 Clostridium stercorarium subsp. leptospartum prokMSA_id:031278 AJ310082 Clostridium stercorarium strain DSM 8532T prokMSA_id:016012 L09174 Clostridium stercorarium NCIMB 11754 . prokMSA_id:016011 L09175 str. Rt51.B1. prokMSA_id:016013 L09176 Clostridium thermolacticum str. TC 21 DSM 2911. prokMSA_id:016014 L09176 Clostridium thermolacticum str. TC 21 DSM 2911. prokMSA_id:016008 NONE Clostridium stercorarium. prokMSA_id:016015 X72870 Clostridium thermolacticum str. TX41. 2.30.9.1.2.003 OTU 1 seq prokMSA_id:062669 AF507892 low G+C Gram-positive clone ML635J-21 2.30.9.1.2.004 OTU 3 seqs prokMSA_id:016009 AF013548 unnamed organism. prokMSA_id:065686 AF507698 soil clone S017 prokMSA_id:065685 AF507699 soil clone S0202 2.30.9.1.2.005 OTU 1 seq prokMSA_id:016010 AF018550 clone JW19. 2.30.9.1.2.006 OTU 1 seq prokMSA_id:077300 AF349428 A8 2.30.9.1.2.007 OTU 1 seq prokMSA_id:081528 AB100479 Clostridiaceae clone: Rs-068 2.30.9.1.2.008 OTU 1 seq prokMSA_id:088161 AJ577312 clone 141 2.30.9.1.2.009 OTU 2 seqs prokMSA_id:098235 AY336984 Clostridium sp. clone AC044 prokMSA_id:097792 AY336985 Clostridium sp. clone AC051 2.30.9.1.2.999 poor quality 18 seqs prokMSA_id:086821 AB099783 clone: OLDB-A9 prokMSA_id:044871 AF128643 soil S017 prokMSA_id:023111 AF128645 soil S0202 prokMSA_id:032334 AF293925 rumen clone 23 prokMSA_id:033670 AF337852 copper smeltery D101 prokMSA_id:055935 AF365751 clone BT60DS4BE4 prokMSA_id:061217 AF432684 clone SMS9.118WL prokMSA_id:061216 AF432685 clone SMS9.125WL prokMSA_id:038043 AY006563 rumen prokMSA_id:045564 AY006742 rumen prokMSA_id:021845 AY006749 rumen prokMSA_id:046226 AY006804 rumen prokMSA_id:043211 AY006809 rumen prokMSA_id:031085 AY006831 rumen prokMSA_id:061387 AY043854 actinobacterium clone NMW3.106WL prokMSA_id:065565 AY095396 yard-trimming-compost clone S-25 prokMSA_id:059312 AY122344 clone I-39 prokMSA_id:059310 AY122345 clone I-40 2.30.9.1.3 C.LEPTUM_SUBGROUP 975 seqs 2.30.9.1.3.001 OTU 1 seq prokMSA_id:016379 AB034011 rumen 3C0d-11 2.30.9.1.3.002 OTU 1 seq prokMSA_id:016466 AB034028 rumen 4C0d-15 2.30.9.1.3.003 OTU 1 seq prokMSA_id:016559 AF371791 clone p-1617-c5 2.30.9.1.3.004 OTU 1 seq prokMSA_id:016629 AF376405 ckncm172-F3M.1E2 2.30.9.1.3.005 OTU 1 seq prokMSA_id:016649 AF371755 clone p-812-a5 2.30.9.1.3.007 OTU 1 seq prokMSA_id:016729 AF371773 clone p-2428-55G5 2.30.9.1.3.009 OTU 3 seqs prokMSA_id:019089 AF132255 adhufec269 prokMSA_id:037799 AF371798 clone p-2856-6C5 prokMSA_id:055945 AF530344 clone cadhufec17g05sav 2.30.9.1.3.010 OTU 1 seq prokMSA_id:017630 AJ408149 equine intestinal sp. ML03 clone ML03 2.30.9.1.3.012 OTU 1 seq prokMSA_id:017850 AF376226 ckncm322-B3-7 2.30.9.1.3.013 OTU 3 seqs prokMSA_id:016029 AB009217 clone RFN7. prokMSA_id:017907 AB034042 rumen 5C0d-9 prokMSA_id:016018 AF001740 clone RF7. 2.30.9.1.3.015 OTU 1 seq prokMSA_id:018957 AJ408212 equine intestinal sp. PL04 clone PL04 2.30.9.1.3.016 OTU 1 seq prokMSA_id:019080 AF371758 clone p-1510-b5 2.30.9.1.3.017 OTU 1 seq prokMSA_id:019113 AB040497 Oscillospira guillermondii clone:OSC3 2.30.9.1.3.018 OTU 1 seq prokMSA_id:019521 AF132235 adhufec101 2.30.9.1.3.019 OTU 1 seq prokMSA_id:019611 AF371779 clone p-1674-b3 2.30.9.1.3.020 OTU 1 seq prokMSA_id:019747 AB034029 rumen 4C0d-16 2.30.9.1.3.021 OTU 1 seq prokMSA_id:019757 AJ408129 equine intestinal sp. DW04 clone DW04 2.30.9.1.3.022 OTU 1 seq prokMSA_id:020289 AJ229190 from anoxic bulk soil clone BSV28 2.30.9.1.3.023 OTU 1 seq prokMSA_id:020372 AB056707 equine intestinal clone:YT25 2.30.9.1.3.024 OTU 2 seqs prokMSA_id:020449 AJ295664 Irt-JG1-53 prokMSA_id:024037 AJ295665 Irt-JG1-68 2.30.9.1.3.027 OTU 1 seq prokMSA_id:020765 AF371768 clone p-3275-A42 2.30.9.1.3.028 OTU 1 seq prokMSA_id:020780 AJ408054 equine intestinal sp. CL19 clone CL19 2.30.9.1.3.029 OTU 1 seq prokMSA_id:020786 AF211305 CE45 2.30.9.1.3.030 OTU 1 seq prokMSA_id:020899 AJ408172 equine intestinal sp. ML26 clone ML26 2.30.9.1.3.031 OTU 2 seqs prokMSA_id:020993 AB034026 rumen 4C0d-13 prokMSA_id:048444 AB034074 rumen 3C3d-3 2.30.9.1.3.032 OTU 2 seqs prokMSA_id:021232 AF371769 clone p-2484-18B5 prokMSA_id:092344 AY343228 clone REC6M_47 2.30.9.1.3.033 OTU 1 seq prokMSA_id:021299 AJ408194 equine intestinal sp. MW07 clone MW07 2.30.9.1.3.034 OTU 2 seqs prokMSA_id:031392 AF371752 clone p-422-o3 prokMSA_id:021306 AF371753 clone p-241-o5 2.30.9.1.3.035 OTU 2 seqs prokMSA_id:025644 AF376221 ckncm317-B3-27 prokMSA_id:021443 AF376222 ckncm318-B6-18 2.30.9.1.3.036 OTU 3 seqs prokMSA_id:031587 AB040495 Oscillospira guillermondii clone:OSC1 prokMSA_id:049276 AB040498 Oscillospira guillermondii clone:OSC4 prokMSA_id:021464 AB040499 Oscillospira guillermondii clone:OSC5 2.30.9.1.3.037 OTU 1 seq prokMSA_id:021784 AB034005 rumen 3C0d-5 2.30.9.1.3.038 OTU 1 seq prokMSA_id:021852 AJ408076 equine intestinal sp. CW06 clone CW06 2.30.9.1.3.039 OTU 1 seq prokMSA_id:022107 AF153873 adhufec53.25 2.30.9.1.3.040 OTU 6 seqs prokMSA_id:032596 AJ408038 equine intestinal sp. CL03 clone CL03 prokMSA_id:054165 AJ408087 equine intestinal sp. CW18 clone CW18 prokMSA_id:052011 AJ408108 equine intestinal sp. DL21 clone DL21 prokMSA_id:031651 AJ408139 equine intestinal sp. DW14 clone DW14 prokMSA_id:027277 AJ408170 equine intestinal sp. ML24 clone ML24 prokMSA_id:022163 AJ408218 equine intestinal sp. PL10 clone PL10 2.30.9.1.3.041 OTU 1 seq prokMSA_id:022352 AJ400237 clone F13 2.30.9.1.3.042 OTU 4 seqs prokMSA_id:033063 AJ408133 equine intestinal sp. DW08 clone DW08 prokMSA_id:045713 AJ408205 equine intestinal sp. MW18 clone MW18 prokMSA_id:022393 AJ408252 equine intestinal sp. PW06 clone PW06 prokMSA_id:088874 AY315253 rumen clone JRCH51 2.30.9.1.3.043 OTU 1 seq prokMSA_id:022509 AJ408103 equine intestinal sp. DL16 clone DL16 2.30.9.1.3.044 OTU 1 seq prokMSA_id:022535 AF276455 clone RFLP 34E 2.30.9.1.3.045 OTU 2 seqs prokMSA_id:047737 AF371745 clone p-886-a5 prokMSA_id:022844 AF371746 clone p-641-a5 2.30.9.1.3.046 OTU 1 seq prokMSA_id:022863 AF376443 ckncm210-F4M.1F5 2.30.9.1.3.047 OTU 1 seq prokMSA_id:023070 AJ408180 equine intestinal sp. ML34 clone ML34 2.30.9.1.3.048 OTU 1 seq prokMSA_id:023194 AJ408236 equine intestinal sp. PL29 clone PL29 2.30.9.1.3.051 OTU 2 seqs prokMSA_id:070024 AF429367 CCAJG39 prokMSA_id:023458 AF429369 CCAJG142 2.30.9.1.3.052 OTU 3 seqs prokMSA_id:023492 AF332709 clone UASB_brew_B8 prokMSA_id:032842 AF332720 clone UASB_brew_B84 prokMSA_id:036596 AF332721 clone UASB_brew_B86 2.30.9.1.3.054 OTU 3 seqs prokMSA_id:071310 AF132242 adhufec168 16 prokMSA_id:023994 AF371775 clone p-3567-9F3 prokMSA_id:092219 AY343156 clone REC1M_26 2.30.9.1.3.055 OTU 1 seq prokMSA_id:024162 AJ295666 Irt-JG1-64 2.30.9.1.3.056 OTU 12 seqs prokMSA_id:026738 AF376201 ckncm297-B1-1 prokMSA_id:073368 AF376202 ckncm298-B3-17 prokMSA_id:024554 AF376204 ckncm300-B2-4 prokMSA_id:073826 AF376205 ckncm301-B3-28 prokMSA_id:073521 AF376206 ckncm302-B3-11 prokMSA_id:072195 AF376207 ckncm303-B3-1 prokMSA_id:073770 AF376208 ckncm304-B3-9 prokMSA_id:073168 AF376211 ckncm307-B-6-40 prokMSA_id:071012 AF376212 ckncm308-B6-4 prokMSA_id:036483 AF376213 ckncm309-B3-39 prokMSA_id:069800 AF376214 ckncm310-B6-79 prokMSA_id:034145 AF376219 ckncm315-B3-32 2.30.9.1.3.057 OTU 1 seq prokMSA_id:024921 AF376228 ckncm324-B6-45 2.30.9.1.3.058 OTU 1 seq prokMSA_id:025038 AF371794 clone p-2197-s959-3 2.30.9.1.3.059 OTU 1 seq prokMSA_id:025054 AF371765 clone p-1082-a5 2.30.9.1.3.060 OTU 1 seq prokMSA_id:025396 AF332710 clone UASB_brew_B23 2.30.9.1.3.061 OTU 1 seq prokMSA_id:025461 AF371722 clone p-2622-9F5 2.30.9.1.3.062 OTU 1 seq prokMSA_id:025695 AF371942 clone p-5212-4Wb5 2.30.9.1.3.063 OTU 1 seq prokMSA_id:025957 AF371792 clone p-2479-18B5 2.30.9.1.3.064 OTU 1 seq prokMSA_id:026264 AF371750 clone p-1637-c5 2.30.9.1.3.066 OTU 1 seq prokMSA_id:026704 AF371823 clone p-2573-9F5 2.30.9.1.3.067 OTU 1 seq prokMSA_id:026978 AF371767 clone p-1741-b3 2.30.9.1.3.068 OTU 1 seq prokMSA_id:027355 AF371738 clone p-1061-a5 2.30.9.1.3.069 OTU 1 seq prokMSA_id:027664 AF429371 CCAJG136 2.30.9.1.3.073 OTU 39 seqs prokMSA_id:055961 AB094171 clone:C-16 prokMSA_id:072568 AF132236 adhufec113 prokMSA_id:027857 AF132246 adhufec218 prokMSA_id:071438 AF132265 adhufec365 prokMSA_id:044444 AF153870 adhufec78.25 prokMSA_id:039948 AF371723 clone p-366-a3 prokMSA_id:045687 AF371724 clone p-2840-6C5 prokMSA_id:036949 AF371725 clone p-77-a5 prokMSA_id:037047 AF371726 clone p-1706-b3 prokMSA_id:037658 AF371727 clone p-1721-b3 prokMSA_id:018520 AF371728 clone p-1720-b3 prokMSA_id:017499 AF371729 clone p-2203-s959-3 prokMSA_id:028428 AF371730 clone p-2557-9F5 prokMSA_id:026836 AF371731 clone p-2423-55G5 prokMSA_id:053461 AF371733 clone p-1749-b3 prokMSA_id:061068 AF530328 clone cadhufec19f08yvb prokMSA_id:061058 AF530338 clone cadhufec17c06sav prokMSA_id:018361 AJ270469 Butyrate-producing A2-165 prokMSA_id:031395 AJ270470 Butyrate-producing L2-6 prokMSA_id:035563 AJ408966 clone HuCA11 prokMSA_id:074119 AJ408973 clone HuCA25 prokMSA_id:040793 AJ409002 clone HuCB29 prokMSA_id:022018 AJ409008 clone HuCA10 prokMSA_id:027866 AJ413954 Fusobacterium prausnitzii strain ATCC 27768 prokMSA_id:089171 AY328373 inhufecB-29 prokMSA_id:088424 AY328374 inhufecB-30 prokMSA_id:091361 AY338310 clone BREC_44 prokMSA_id:092118 AY343137 clone REC1M_19 prokMSA_id:092699 AY343138 clone REC1M_88 prokMSA_id:092476 AY343139 clone REC1M_2 prokMSA_id:092561 AY343140 clone REC1M_14 prokMSA_id:092486 AY343141 clone REC1M_16 prokMSA_id:092657 AY343142 clone REC1M_40 prokMSA_id:092229 AY343179 clone REC6M_58 prokMSA_id:092678 AY343208 clone REC6M_10 prokMSA_id:093044 AY343248 clone DONOR_42 prokMSA_id:092646 AY343309 clone DONOR_3 prokMSA_id:095490 AY388434 clone Adhuleft20 prokMSA_id:016080 X85022 Fusobacterium prausnitzii ATCC 27766. 2.30.9.1.3.074 OTU 1 seq prokMSA_id:027876 AJ408132 equine intestinal sp. DW07 clone DW07 2.30.9.1.3.075 OTU 1 seq prokMSA_id:028258 AF332711 clone UASB_brew_B25 2.30.9.1.3.076 OTU 1 seq prokMSA_id:028809 AF371943 clone p-5228-4Wb5 2.30.9.1.3.077 OTU 1 seq prokMSA_id:029029 AF371743 clone p-1293-a5 2.30.9.1.3.078 OTU 5 seqs prokMSA_id:031936 AB034070 rumen 6C3d-12 prokMSA_id:029057 AB034071 rumen 6C3d-10 prokMSA_id:039644 AB034072 rumen 6C3d-27 prokMSA_id:054623 AB034073 rumen 6C3d-33 prokMSA_id:044628 AB034124 rumen 4C28d-19 2.30.9.1.3.079 OTU 1 seq prokMSA_id:029313 AJ408114 equine intestinal sp. DL27 clone DL27 2.30.9.1.3.080 OTU 2 seqs prokMSA_id:029357 AJ408181 equine intestinal sp. ML35 clone ML35 prokMSA_id:036190 AJ408222 equine intestinal sp. PL14 clone PL14 2.30.9.1.3.081 OTU 1 seq prokMSA_id:029413 AF371796 clone p-2657-65A5 2.30.9.1.3.082 OTU 2 seqs prokMSA_id:029495 AF371720 clone p-2609-9F5 prokMSA_id:049605 AF371721 clone p-3796-23G3 2.30.9.1.3.083 OTU 2 seqs prokMSA_id:070286 AF429372 CCAJG1 prokMSA_id:029607 AF429373 CCAJG31 2.30.9.1.3.084 OTU 1 seq prokMSA_id:030007 AF332719 clone UASB_brew_B22 2.30.9.1.3.085 OTU 1 seq prokMSA_id:030067 AF371759 clone p-2506-18B5 2.30.9.1.3.086 OTU 1 seq prokMSA_id:030239 AJ408109 equine intestinal sp. DL22 clone DL22 2.30.9.1.3.087 OTU 1 seq prokMSA_id:030476 AF132283 adhufec108 2.30.9.1.3.088 OTU 1 seq prokMSA_id:030534 AF284556 Hydrogen production community clone HPB-G1-15 2.30.9.1.3.089 OTU 1 seq prokMSA_id:030743 AF371940 clone p-5291-2Wa3 2.30.9.1.3.090 OTU 1 seq prokMSA_id:030872 AF371754 clone p-891-a5 2.30.9.1.3.091 OTU 1 seq prokMSA_id:031384 AF371749 clone p-839-a5 2.30.9.1.3.092 OTU 1 seq prokMSA_id:031495 AB045747 equine intestinal YT1 2.30.9.1.3.093 OTU 1 seq prokMSA_id:031601 AF481148 Linmingia china 2.30.9.1.3.094 OTU 2 seqs prokMSA_id:046657 AF376229 ckncm325-B3-50 prokMSA_id:031654 AF376398 ckncm165-F3M.1B9 2.30.9.1.3.095 OTU 1 seq prokMSA_id:031732 AJ408121 equine intestinal sp. DL34 clone DL34 2.30.9.1.3.096 OTU 1 seq prokMSA_id:031763 AF371736 clone p-193-o5 2.30.9.1.3.097 OTU 1 seq prokMSA_id:031958 AJ408257 equine intestinal sp. PW11 clone PW11 2.30.9.1.3.098 OTU 1 seq prokMSA_id:031973 AJ408998 clone HuCB24 2.30.9.1.3.099 OTU 3 seqs prokMSA_id:088785 AY328360 inhufecA-19 prokMSA_id:016016 NONE plautii DSM 4000 . prokMSA_id:032020 Y18187 Clostridium orbiscindens strain DSM 674 2.30.9.1.3.100 OTU 1 seq prokMSA_id:032491 AJ305238 Clostridium leptum strain DSM 753T 2.30.9.1.3.101 OTU 6 seqs prokMSA_id:032948 AF132258 adhufec296 prokMSA_id:071027 AF371807 clone p-900-a5 prokMSA_id:092837 AY343181 clone REC6M_79 prokMSA_id:092291 AY343222 clone REC6M_13 prokMSA_id:092450 AY343242 clone DONOR_2 prokMSA_id:092896 AY343243 clone DONOR_7 2.30.9.1.3.102 OTU 1 seq prokMSA_id:033112 AF371740 clone p-1719-b3 2.30.9.1.3.103 OTU 2 seqs prokMSA_id:033321 AB034039 rumen 5C0d-6 prokMSA_id:033958 AB034040 rumen 5C0d-7 2.30.9.1.3.104 OTU 1 seq prokMSA_id:033345 AB034019 rumen 4C0d-6 2.30.9.1.3.105 OTU 6 seqs prokMSA_id:033914 AF371739 clone p-4177-6Wa5 prokMSA_id:045958 AF376432 ckncm199-F4M.1C11 prokMSA_id:034444 AF429363 CCAJG52 prokMSA_id:033458 AF429364 CCAJG144 prokMSA_id:072987 AJ408957 clone HuCA1 prokMSA_id:092071 AY343317 clone DONOR_90 2.30.9.1.3.106 OTU 1 seq prokMSA_id:033668 AF371742 clone p-417-o3 2.30.9.1.3.107 OTU 1 seq prokMSA_id:033877 AF429381 CCAJG114 2.30.9.1.3.108 OTU 1 seq prokMSA_id:033984 AF371830 clone p-595-a5 2.30.9.1.3.109 OTU 3 seqs prokMSA_id:034702 AF429378 CCAJG17 prokMSA_id:051839 AF429379 CCAJG115 prokMSA_id:034249 AF429380 CCAJG22 2.30.9.1.3.110 OTU 1 seq prokMSA_id:034412 AF371797 clone p-956-s962-5 2.30.9.1.3.113 OTU 1 seq prokMSA_id:034823 AF371937 clone p-5152-2Wb3 2.30.9.1.3.114 OTU 1 seq prokMSA_id:035154 AF371744 clone p-3051-SwA5 2.30.9.1.3.115 OTU 1 seq prokMSA_id:035394 AJ408060 equine intestinal sp. CL26 clone CL26 2.30.9.1.3.116 OTU 2 seqs prokMSA_id:040778 AJ408200 equine intestinal sp. MW13 clone MW13 prokMSA_id:035576 AJ408234 equine intestinal sp. PL27 clone PL27 2.30.9.1.3.117 OTU 1 seq prokMSA_id:035786 AF371778 clone p-2498-18B5 2.30.9.1.3.118 OTU 1 seq prokMSA_id:036271 Y18181 Clostridium methylpentosum strain DSM 5476 2.30.9.1.3.119 OTU 1 seq prokMSA_id:036378 AF371777 clone p-1528-b5 2.30.9.1.3.120 OTU 1 seq prokMSA_id:036503 AF371801 clone p-4322-4Wa3 2.30.9.1.3.121 OTU 1 seq prokMSA_id:036670 AF429370 CCAJG148 2.30.9.1.3.122 OTU 1 seq prokMSA_id:037295 AB062812 clone:BCf2-24 2.30.9.1.3.123 OTU 1 seq prokMSA_id:037423 AB062821 clone:BCf4-08 2.30.9.1.3.124 OTU 1 seq prokMSA_id:038129 AF371948 clone p-5460-2Wb5 2.30.9.1.3.126 OTU 19 seqs prokMSA_id:023250 AF371781 clone p-2628-9F5 prokMSA_id:020545 AF371782 clone p-2625-9F5 prokMSA_id:044399 AF371783 clone p-2600-9F5 prokMSA_id:043760 AF371784 clone p-2577-9F5 prokMSA_id:038344 AF371785 clone p-397-o3 prokMSA_id:034464 AF371786 clone p-2215-s959-3 prokMSA_id:045610 AF371787 clone p-2179-s959-3 prokMSA_id:027984 AF371788 clone p-882-a5 prokMSA_id:068839 AF371789 clone p-1497-b5 prokMSA_id:045365 AF371790 clone p-320-a3 prokMSA_id:049807 AJ241725 microorganism clone Cal21 prokMSA_id:017791 AJ408064 equine intestinal sp. CL30 clone CL30 prokMSA_id:046373 AJ408075 equine intestinal sp. CW05 clone CW05 prokMSA_id:019309 AJ408117 equine intestinal sp. DL30 clone DL30 prokMSA_id:031962 AJ408138 equine intestinal sp. DW13 clone DW13 prokMSA_id:023510 AJ408187 equine intestinal sp. ML41 clone ML41 prokMSA_id:030529 AJ408189 equine intestinal sp. MW02 clone MW02 prokMSA_id:024789 AJ408226 equine intestinal sp. PL19 clone PL19 prokMSA_id:034607 AJ408255 equine intestinal sp. PW09 clone PW09 2.30.9.1.3.127 OTU 1 seq prokMSA_id:038530 AF371793 clone p-249-o5 2.30.9.1.3.128 OTU 2 seqs prokMSA_id:039555 AB034125 rumen 4C28d-4 prokMSA_id:046835 AF371799 clone p-953-s962-5 2.30.9.1.3.129 OTU 1 seq prokMSA_id:039700 AF167711 Papillibacter cinnaminovorans 2.30.9.1.3.130 OTU 1 seq prokMSA_id:039943 AF376227 ckncm323-B6-26 2.30.9.1.3.131 OTU 1 seq prokMSA_id:040149 AF371802 clone p-2430-55G5 2.30.9.1.3.132 OTU 1 seq prokMSA_id:040164 AF371764 clone p-1986-959-5 2.30.9.1.3.133 OTU 1 seq prokMSA_id:040419 AB056678 equine intestinal clone:YT23 2.30.9.1.3.134 OTU 1 seq prokMSA_id:040552 AB034003 rumen 3C0d-3 2.30.9.1.3.135 OTU 1 seq prokMSA_id:040616 AF371770 clone p-84-a5 2.30.9.1.3.136 OTU 1 seq prokMSA_id:040798 AF371806 clone p-2560-9F5 2.30.9.1.3.137 OTU 1 seq prokMSA_id:041119 AB040496 Oscillospira guillermondii clone:OSC2 2.30.9.1.3.138 OTU 1 seq prokMSA_id:041287 AF371776 clone p-1651-c5 2.30.9.1.3.140 OTU 1 seq prokMSA_id:041628 AF371933 clone p-5013-2Wa5 2.30.9.1.3.141 OTU 1 seq prokMSA_id:058006 AB094170 clone:C-6 2.30.9.1.3.142 OTU 1 seq prokMSA_id:042379 AB034048 rumen 5C0d-16 2.30.9.1.3.145 OTU 1 seq prokMSA_id:042458 AF371741 clone p-1699-b3 2.30.9.1.3.146 OTU 1 seq prokMSA_id:042480 AB034033 rumen 3C0d-15 2.30.9.1.3.149 OTU 1 seq prokMSA_id:042993 AF429356 CCAJG166 2.30.9.1.3.150 OTU 1 seq prokMSA_id:043051 AF371737 clone p-810-a5 2.30.9.1.3.151 OTU 1 seq prokMSA_id:043052 AF371774 clone p-878-a5 2.30.9.1.3.152 OTU 1 seq prokMSA_id:043950 AF371803 clone p-1316-a5 2.30.9.1.3.153 OTU 1 seq prokMSA_id:044151 AF371804 clone p-1487-b5 2.30.9.1.3.154 OTU 1 seq prokMSA_id:044184 AF371761 clone p-3778-23G3 2.30.9.1.3.155 OTU 1 seq prokMSA_id:044335 AB034034 rumen 3C0d-19 2.30.9.1.3.156 OTU 3 seqs prokMSA_id:016043 AF030449 Ruminococcus flavefaciens str. C52 ATCC 49949. prokMSA_id:051373 AF357569 mpn-isolate group 21 prokMSA_id:044827 AF371747 clone p-421-o3 2.30.9.1.3.157 OTU 1 seq prokMSA_id:044984 AF153871 adhufec08.25 2.30.9.1.3.158 OTU 1 seq prokMSA_id:045063 AF317376 feedlot manure B54 2.30.9.1.3.159 OTU 1 seq prokMSA_id:045135 AJ404681 ZF3 2.30.9.1.3.160 OTU 1 seq prokMSA_id:045345 AJ408143 equine intestinal sp. DW18 clone DW18 2.30.9.1.3.161 OTU 1 seq prokMSA_id:045569 AB034013 rumen 3C0d-14 2.30.9.1.3.162 OTU 1 seq prokMSA_id:045641 AB034008 rumen 3C0d-8 2.30.9.1.3.163 OTU 1 seq prokMSA_id:045766 AB034020 rumen 4C0d-7 2.30.9.1.3.164 OTU 2 seqs prokMSA_id:016021 AB009219 clone RFN71. prokMSA_id:045828 AB034076 rumen 3C3d-13 2.30.9.1.3.165 OTU 1 seq prokMSA_id:072938 AF376210 ckncm306-B3-19 2.30.9.1.3.166 OTU 1 seq prokMSA_id:045893 AF371760 clone p-4157-6Wa5 2.30.9.1.3.167 OTU 1 seq prokMSA_id:046893 AF376441 ckncm208-F4M.1E6 2.30.9.1.3.168 OTU 1 seq prokMSA_id:046910 AF371762 clone p-2239-s959-3 2.30.9.1.3.169 OTU 1 seq prokMSA_id:047256 AJ408144 equine intestinal sp. DW19 clone DW19 2.30.9.1.3.170 OTU 1 seq prokMSA_id:048084 AF371756 clone p-1791-c3 2.30.9.1.3.171 OTU 1 seq prokMSA_id:048325 AF371795 clone p-2027-s959-5 2.30.9.1.3.172 OTU 1 seq prokMSA_id:048828 AJ408106 equine intestinal sp. DL19 clone DL19 2.30.9.1.3.173 OTU 1 seq prokMSA_id:049243 AJ408199 equine intestinal sp. MW12 clone MW12 2.30.9.1.3.174 OTU 2 seqs prokMSA_id:049455 AJ270471 Butyrate-producing A2-207 prokMSA_id:092452 AY343244 clone DONOR_27 2.30.9.1.3.175 OTU 1 seq prokMSA_id:049472 AJ408976 clone HuCA24 2.30.9.1.3.176 OTU 1 seq prokMSA_id:049618 AJ408256 equine intestinal sp. PW010 clone PW10 2.30.9.1.3.177 OTU 1 seq prokMSA_id:049817 AF371763 clone p-594-a5 2.30.9.1.3.178 OTU 1 seq prokMSA_id:050072 AF376224 ckncm320-B3-25 2.30.9.1.3.179 OTU 1 seq prokMSA_id:050218 AF371751 clone p-206-o5 2.30.9.1.3.180 OTU 1 seq prokMSA_id:050712 AF371934 clone p-5014-2Wa5 2.30.9.1.3.181 OTU 1 seq prokMSA_id:051306 AF371734 clone p-2576-9F5 2.30.9.1.3.182 OTU 1 seq prokMSA_id:051323 AB062828 clone:BCf5-21 2.30.9.1.3.183 OTU 1 seq prokMSA_id:051328 AF371947 clone p-5459-2Wb5 2.30.9.1.3.184 OTU 1 seq prokMSA_id:051616 AJ408094 equine intestinal sp. DL06 clone DL06 2.30.9.1.3.185 OTU 3 seqs prokMSA_id:051722 AF371805 clone p-1877-s962-3 prokMSA_id:092337 AY343157 clone REC1M_71 prokMSA_id:093125 AY343171 clone REC1M_67 2.30.9.1.3.186 OTU 1 seq prokMSA_id:051886 AF276451 clone RFLP 17E 2.30.9.1.3.187 OTU 1 seq prokMSA_id:051907 AB034075 rumen 6C3d-31 2.30.9.1.3.188 OTU 1 seq prokMSA_id:052755 AJ408987 clone HuCB2 2.30.9.1.3.189 OTU 1 seq prokMSA_id:052759 AF371735 clone p-4067-6Wa3 2.30.9.1.3.190 OTU 1 seq prokMSA_id:053789 AF376430 ckncm197-F4M.1B5 2.30.9.1.3.191 OTU 1 seq prokMSA_id:061040 AF530358 clone cadhufec18f04sav 2.30.9.1.3.192 OTU 1 seq prokMSA_id:061041 AF530356 clone cadhufec18e11sav 2.30.9.1.3.193 OTU 15 seqs prokMSA_id:058007 AB094172 clone:C-15 prokMSA_id:042426 AF132247 adhufec21 prokMSA_id:023588 AF371771 clone p-2452-18B5 prokMSA_id:042839 AF371772 clone p-4176-6Wa5 prokMSA_id:061082 AF530317 clone cadhufec014h7 prokMSA_id:061054 AF530345 clone cadhufec17g06sav prokMSA_id:078096 AJ514438 clone ASG10 prokMSA_id:091399 AY338307 clone BREC_88 prokMSA_id:091032 AY338308 clone BREC_98 prokMSA_id:092018 AY338309 clone BREC_46 prokMSA_id:091356 AY338336 clone BREC_59 prokMSA_id:091951 AY338337 clone BREC_53 prokMSA_id:091997 AY338340 clone BREC_79 prokMSA_id:091404 AY338341 clone BREC_94 prokMSA_id:016076 X85099 Ruminococcus bromii. 2.30.9.1.3.194 OTU 1 seq prokMSA_id:066186 AJ488078 clone IB-18 2.30.9.1.3.195 OTU 1 seq prokMSA_id:066188 AJ488075 clone IA-24 2.30.9.1.3.196 OTU 1 seq prokMSA_id:066551 AY100529 clone cvf64001 2.30.9.1.3.197 OTU 1 seq prokMSA_id:066611 AB084627 Clostridiaceae str. 80Kb 2.30.9.1.3.198 OTU 1 seq prokMSA_id:066942 AJ306752 clone SHA-32 2.30.9.1.3.199 OTU 1 seq prokMSA_id:069480 AY136666 Bacteroides capillosus 2.30.9.1.3.200 OTU 1 seq prokMSA_id:016017 AF001706 clone RC15. 2.30.9.1.3.201 OTU 1 seq prokMSA_id:016019 AF001758 clone RF26. 2.30.9.1.3.202 OTU 1 seq prokMSA_id:016022 AJ238611 str. HDCA-1. 2.30.9.1.3.203 OTU 1 seq prokMSA_id:016023 AF157051 str. ASF 500. 2.30.9.1.3.205 OTU 1 seq prokMSA_id:016026 Z49863 Sporobacter termitidis str. SYR DSM 10068 . 2.30.9.1.3.206 OTU 1 seq prokMSA_id:016027 AF001761 clone RF29. 2.30.9.1.3.207 OTU 1 seq prokMSA_id:016030 U81762 clone vadinHA42. 2.30.9.1.3.208 OTU 1 seq prokMSA_id:016031 AF129864 clone BC09. 2.30.9.1.3.209 OTU 1 seq prokMSA_id:016032 AF129863 clone HB31. 2.30.9.1.3.210 OTU 1 seq prokMSA_id:016033 AF129862 clone CA26. 2.30.9.1.3.211 OTU 1 seq prokMSA_id:016034 AF129861 clone BA18. 2.30.9.1.3.212 OTU 1 seq prokMSA_id:016036 AF001720 clone RC37. 2.30.9.1.3.215 OTU 12 seqs prokMSA_id:016038 AB009234 clone RFN88. prokMSA_id:026324 AB034024 rumen 4C0d-11 prokMSA_id:016037 AF001730 clone RCP6. prokMSA_id:016068 AF030447 Ruminococcus flavefaciens str. 007; LRC017. prokMSA_id:016069 AF030448 Ruminococcus flavefaciens str. 4; LRC083. prokMSA_id:016070 AF030450 Ruminococcus flavefaciens str. 17. prokMSA_id:016039 AF104844 Ruminococcus flavefaciens str. FD-1. prokMSA_id:016065 AF104846 Ruminococcus flavefaciens str. Y1. prokMSA_id:088520 AY315345 rumen clone JRCK09 prokMSA_id:016025 L76603 Ruminococcus flavefaciens str. C94 ATCC 19208 . prokMSA_id:016064 X83430 Ruminococcus flavefaciens str. C94 NCFB 2213 . prokMSA_id:016035 X85097 Ruminococcus flavefaciens str. C94 ATCC 19208 . 2.30.9.1.3.216 OTU 1 seq prokMSA_id:016040 AF104837 Ruminococcus flavefaciens str. AR46. 2.30.9.1.3.217 OTU 2 seqs prokMSA_id:016042 AF104834 Ruminococcus flavefaciens str. LP-C14-Adx. prokMSA_id:016041 AF104835 Ruminococcus flavefaciens str. LP-R1-Adx. 2.30.9.1.3.218 OTU 1 seq prokMSA_id:016045 AF001713 clone RC23. 2.30.9.1.3.219 OTU 1 seq prokMSA_id:016046 AB009232 clone RFN85. 2.30.9.1.3.220 OTU 1 seq prokMSA_id:016047 M59116 Clostridium sporosphaeroides ATCC 25781 . 2.30.9.1.3.221 OTU 5 seqs prokMSA_id:016052 AF030452 Ruminococcus albus str. OR108. prokMSA_id:016075 AF079847 Ruminococcus albus str. F-40. prokMSA_id:016049 AF104839 Ruminococcus albus str. AR67. prokMSA_id:016048 L76598 Ruminococcus albus str. 7 ATCC 27210 . prokMSA_id:016074 X85098 Ruminococcus albus. 2.30.9.1.3.222 OTU 2 seqs prokMSA_id:016051 AF030451 Ruminococcus albus str. 20 ATCC 27211. prokMSA_id:016050 AF104833 Ruminococcus albus str. Ra8. 2.30.9.1.3.224 OTU 1 seq prokMSA_id:016057 U81642 clone vadinBA08. 2.30.9.1.3.225 OTU 2 seqs prokMSA_id:016081 X97852 Anaerofilum pentosovorans str. Fae DSM 7168 . prokMSA_id:016058 X98011 Anaerofilum agile str. F DSM 4272 . 2.30.9.1.3.226 OTU 1 seq prokMSA_id:016059 L09177 Clostridium cellulosi str. . 2.30.9.1.3.227 OTU 1 seq prokMSA_id:016060 AF001698 clone RC5. 2.30.9.1.3.228 OTU 1 seq prokMSA_id:016061 AF001699 clone RC6. 2.30.9.1.3.229 OTU 1 seq prokMSA_id:016062 AF050581 clone WCHB1-49. 2.30.9.1.3.230 OTU 1 seq prokMSA_id:016063 AB009176 clone RFN17. 2.30.9.1.3.231 OTU 1 seq prokMSA_id:016066 AF104841 Ruminococcus flavefaciens str. AR72. 2.30.9.1.3.232 OTU 1 seq prokMSA_id:016067 AF030446 Ruminococcus flavefaciens str. NJ. 2.30.9.1.3.233 OTU 1 seq prokMSA_id:016072 X81125 Clostridium viride str. T2-7 DSM 6836 . 2.30.9.1.3.234 OTU 1 seq prokMSA_id:016073 AF050582 clone WCHB1-54. 2.30.9.1.3.235 OTU 1 seq prokMSA_id:016077 AF018544 clone JW3. 2.30.9.1.3.236 OTU 2 seqs prokMSA_id:016078 AB009169 clone RFN10. prokMSA_id:016079 AB009210 clone RFN63. 2.30.9.1.3.237 OTU 3 seqs prokMSA_id:070077 AF132280 adhufec81 prokMSA_id:092075 AY343229 clone REC6M_33 prokMSA_id:092952 AY343230 clone REC6M_19 2.30.9.1.3.238 OTU 2 seqs prokMSA_id:071071 AF376203 ckncm299-B6-29 prokMSA_id:071749 AF376209 ckncm305-B2-7 2.30.9.1.3.239 OTU 1 seq prokMSA_id:071706 AF150697 Elbe River snow isolate Iso15_5 2.30.9.1.3.240 OTU 1 seq prokMSA_id:071858 AF376225 ckncm321-B7-11 2.30.9.1.3.241 OTU 1 seq prokMSA_id:072147 AF376220 ckncm316-B4-5 2.30.9.1.3.242 OTU 1 seq prokMSA_id:072170 AF317365 feedlot manure B17 2.30.9.1.3.243 OTU 1 seq prokMSA_id:072584 AF376217 ckncm313-B6-67 2.30.9.1.3.244 OTU 1 seq prokMSA_id:072970 AF132277 adhufec58 2.30.9.1.3.245 OTU 1 seq prokMSA_id:073132 AJ488093 clone IIIA-3 2.30.9.1.3.246 OTU 1 seq prokMSA_id:073205 AF376223 ckncm319-B7-19 2.30.9.1.3.247 OTU 1 seq prokMSA_id:073575 AF376218 ckncm314-B7-17 2.30.9.1.3.248 OTU 1 seq prokMSA_id:073606 AF376230 ckncm326-B4-13 2.30.9.1.3.249 OTU 1 seq prokMSA_id:073946 AF371780 clone p-2448-18B5 2.30.9.1.3.250 OTU 1 seq prokMSA_id:074461 AF357573 mpn-isolate group 25 2.30.9.1.3.251 OTU 1 seq prokMSA_id:074798 AF132261 adhufec311 2.30.9.1.3.252 OTU 1 seq prokMSA_id:074926 AY147278 clone THM-8 2.30.9.1.3.253 OTU 1 seq prokMSA_id:077443 AF349415 A2 2.30.9.1.3.254 OTU 1 seq prokMSA_id:077507 AF349422 A29-1 2.30.9.1.3.255 OTU 1 seq prokMSA_id:077617 AB088967 Clostridiaceae clone:Rs-P37 2.30.9.1.3.256 OTU 1 seq prokMSA_id:077671 AB089033 Clostridiaceae clone:Rs-N16 2.30.9.1.3.257 OTU 1 seq prokMSA_id:077693 AB089043 Clostridiaceae clone:Rs-A15 2.30.9.1.3.258 OTU 1 seq prokMSA_id:077698 AB089038 Clostridiaceae clone:Rs-D76 2.30.9.1.3.259 OTU 1 seq prokMSA_id:077706 AB088959 Clostridiaceae clone:Rs-B44 2.30.9.1.3.260 OTU 1 seq prokMSA_id:077718 AB088953 Clostridiaceae clone:Rs-N03 2.30.9.1.3.261 OTU 1 seq prokMSA_id:077723 AB088981 Clostridiaceae clone:Rs-P74 2.30.9.1.3.262 OTU 1 seq prokMSA_id:077761 AB088984 Clostridiaceae clone:Rs-N21 2.30.9.1.3.263 OTU 1 seq prokMSA_id:077781 AB089034 Clostridiaceae clone:Rs-Q53 2.30.9.1.3.264 OTU 1 seq prokMSA_id:077791 AB088983 Clostridiaceae clone:Rs-B34 2.30.9.1.3.265 OTU 1 seq prokMSA_id:077796 AB089012 Clostridiaceae clone:Rs-B65 2.30.9.1.3.266 OTU 1 seq prokMSA_id:077804 AB088966 Clostridiaceae clone:Rs-H18 2.30.9.1.3.267 OTU 1 seq prokMSA_id:077816 AB089047 Clostridiaceae clone:Rs-C69 2.30.9.1.3.268 OTU 1 seq prokMSA_id:077833 AB089039 Clostridiaceae clone:Rs-K92 2.30.9.1.3.269 OTU 1 seq prokMSA_id:077848 AB089028 Clostridiaceae clone:Rs-M23 2.30.9.1.3.270 OTU 1 seq prokMSA_id:077864 AB089032 Clostridiaceae clone:Rs-N73 2.30.9.1.3.271 OTU 1 seq prokMSA_id:077897 AB088980 Clostridiaceae clone:Rs-N06 2.30.9.1.3.272 OTU 1 seq prokMSA_id:077977 AB089006 Clostridiaceae clone:Rs-G04 2.30.9.1.3.273 OTU 1 seq prokMSA_id:077987 AB089036 Clostridiaceae clone:Rs-K11 2.30.9.1.3.274 OTU 1 seq prokMSA_id:078007 AB089030 Clostridiaceae clone:Rs-A13 2.30.9.1.3.275 OTU 1 seq prokMSA_id:078067 AB088951 Clostridiaceae clone:Rs-M86 2.30.9.1.3.276 OTU 1 seq prokMSA_id:078083 AB088958 Clostridiaceae clone:Rs-M87 2.30.9.1.3.277 OTU 1 seq prokMSA_id:078138 AB088969 Clostridiaceae clone:Rs-N70 2.30.9.1.3.278 OTU 1 seq prokMSA_id:078154 AB089044 Clostridiaceae clone:Rs-M14 2.30.9.1.3.279 OTU 1 seq prokMSA_id:078167 AB089031 Clostridiaceae clone:Rs-G87 2.30.9.1.3.280 OTU 1 seq prokMSA_id:078168 AB089037 Clostridiaceae clone:Rs-K47 2.30.9.1.3.281 OTU 1 seq prokMSA_id:078171 AB089040 Clostridiaceae clone:Rs-N94 2.30.9.1.3.282 OTU 1 seq prokMSA_id:078174 AB089007 Clostridiaceae clone:Rs-G06 2.30.9.1.3.283 OTU 1 seq prokMSA_id:078184 AB089035 Clostridiaceae clone:Rs-N02 2.30.9.1.3.284 OTU 1 seq prokMSA_id:078187 AB089045 Clostridiaceae clone:Rs-C76 2.30.9.1.3.285 OTU 1 seq prokMSA_id:078224 AB088965 Clostridiaceae clone:Rs-M34 2.30.9.1.3.286 OTU 1 seq prokMSA_id:078248 AB089026 Clostridiaceae clone:Rs-K36 2.30.9.1.3.287 OTU 1 seq prokMSA_id:078294 AB089046 Clostridiaceae clone:Rs-C61 2.30.9.1.3.288 OTU 1 seq prokMSA_id:078317 AB089008 Clostridiaceae clone:Rs-Q01 2.30.9.1.3.289 OTU 1 seq prokMSA_id:078368 AB088968 Clostridiaceae clone:Rs-M18 2.30.9.1.3.290 OTU 1 seq prokMSA_id:078375 AB088952 Clostridiaceae clone:Rs-N86 2.30.9.1.3.291 OTU 1 seq prokMSA_id:078376 AB089029 Clostridiaceae clone:Rs-Q69 2.30.9.1.3.292 OTU 1 seq prokMSA_id:078388 AB089041 Clostridiaceae clone:Rs-K32 2.30.9.1.3.293 OTU 1 seq prokMSA_id:078408 AB088979 Clostridiaceae clone:Rs-M04 2.30.9.1.3.294 OTU 1 seq prokMSA_id:080201 AY188291 clone KD1-101 2.30.9.1.3.295 OTU 1 seq prokMSA_id:081041 AB100492 Clostridiaceae clone: Rs-084 2.30.9.1.3.296 OTU 1 seq prokMSA_id:081110 AB100476 Clostridiaceae clone: Rs-093 2.30.9.1.3.297 OTU 1 seq prokMSA_id:081229 AY217389 LTCE-T2A 2B 2.30.9.1.3.298 OTU 1 seq prokMSA_id:081319 AB100487 Clostridiaceae clone: Rs-039 2.30.9.1.3.299 OTU 1 seq prokMSA_id:081337 AY217391 LTCE-T2A 5B 2.30.9.1.3.300 OTU 1 seq prokMSA_id:081387 AB100491 Clostridiaceae clone: Rs-121 2.30.9.1.3.301 OTU 1 seq prokMSA_id:081416 AB100488 Clostridiaceae clone: Rs-061 2.30.9.1.3.302 OTU 1 seq prokMSA_id:081523 AB100490 Clostridiaceae clone: Rs-072 2.30.9.1.3.303 OTU 1 seq prokMSA_id:081566 AY218560 clone KD1-35 2.30.9.1.3.304 OTU 1 seq prokMSA_id:081634 AB100469 Clostridiaceae clone: Rs-109 2.30.9.1.3.305 OTU 1 seq prokMSA_id:081848 AB100482 Clostridiaceae clone: Rs-073 2.30.9.1.3.306 OTU 1 seq prokMSA_id:081882 AB100483 Clostridiaceae clone: Rs-058 2.30.9.1.3.307 OTU 1 seq prokMSA_id:081891 AB100477 Clostridiaceae clone: Rs-062 2.30.9.1.3.308 OTU 1 seq prokMSA_id:081903 AB100489 Clostridiaceae clone: Rs-L27 2.30.9.1.3.309 OTU 1 seq prokMSA_id:081951 AB100480 Clostridiaceae clone: Rs-041 2.30.9.1.3.310 OTU 1 seq prokMSA_id:081967 AB100473 Clostridiaceae clone: Rs-088 2.30.9.1.3.311 OTU 1 seq prokMSA_id:081980 AB100486 Clostridiaceae clone: Rs-116 2.30.9.1.3.312 OTU 1 seq prokMSA_id:082016 AB100485 Clostridiaceae clone: Rs-114 2.30.9.1.3.313 OTU 1 seq prokMSA_id:082017 AB100494 Clostridiaceae clone: Rs-L18 2.30.9.1.3.314 OTU 1 seq prokMSA_id:082116 AB100481 Clostridiaceae clone: Rs-117 2.30.9.1.3.315 OTU 1 seq prokMSA_id:082143 AB100484 Clostridiaceae clone: Rs-L03 2.30.9.1.3.316 OTU 1 seq prokMSA_id:082168 AY218614 clone KD3-68 2.30.9.1.3.317 OTU 1 seq prokMSA_id:082868 AF499901 clone ABLCf22 2.30.9.1.3.318 OTU 1 seq prokMSA_id:083830 AY207065 Clostridiales oral clone P4PA_66 P1 2.30.9.1.3.319 OTU 1 seq prokMSA_id:084779 AY244949 rumen clone BE33 2.30.9.1.3.320 OTU 1 seq prokMSA_id:085153 AY244908 rumen clone BF30 2.30.9.1.3.321 OTU 1 seq prokMSA_id:085658 AY244917 rumen clone BF39 2.30.9.1.3.322 OTU 1 seq prokMSA_id:085810 AF499903 clone ABLCf36 2.30.9.1.3.323 OTU 1 seq prokMSA_id:085903 AF550610 Lachnospiraceae 19gly4 2.30.9.1.3.324 OTU 1 seq prokMSA_id:086322 AY231320 clone R1_20 2.30.9.1.3.325 OTU 1 seq prokMSA_id:086681 AY231347 clone ER2_22 2.30.9.1.3.326 OTU 1 seq prokMSA_id:086699 AY228696 clone SSE4 2.30.9.1.3.327 OTU 1 seq prokMSA_id:088085 AY311606 clone YRCA14 2.30.9.1.3.328 OTU 1 seq prokMSA_id:088895 AY311652 clone YRCC23 2.30.9.1.3.329 OTU 1 seq prokMSA_id:089010 AY311656 clone YRCC30 2.30.9.1.3.330 OTU 1 seq prokMSA_id:089453 AB113732 clone:OAB46 2.30.9.1.3.331 OTU 1 seq prokMSA_id:089589 AY311603 clone YRCA07 2.30.9.1.3.332 OTU 1 seq prokMSA_id:089680 AY315302 rumen clone JRCJ02 2.30.9.1.3.333 OTU 1 seq prokMSA_id:089894 AY315339 rumen clone JRCJ72 2.30.9.1.3.334 OTU 1 seq prokMSA_id:089966 AB113673 clone:AAB36 2.30.9.1.3.335 OTU 1 seq prokMSA_id:090053 AY311646 clone YRCC09 2.30.9.1.3.336 OTU 1 seq prokMSA_id:090140 AY315213 rumen clone JRCG33 2.30.9.1.3.337 OTU 1 seq prokMSA_id:090288 AY315333 rumen clone JRCJ61 2.30.9.1.3.338 OTU 1 seq prokMSA_id:090662 AY311734 clone YRCE28 2.30.9.1.3.339 OTU 2 seqs prokMSA_id:091474 AY332397 Clostridiaceae rennanqilyf1 prokMSA_id:094189 AY339127 Clostridiaceae rennanqilyf6 complete 2.30.9.1.3.341 OTU 43 seqs prokMSA_id:051893 AB050851 CB25 prokMSA_id:049343 AF132237 adhufec13 prokMSA_id:048862 AF153872 adhufec15.25 prokMSA_id:046933 AF371715 clone p-2559-9F5 prokMSA_id:046691 AF371716 clone p-2814-24E5 prokMSA_id:018308 AF371717 clone p-2617-9F5 prokMSA_id:052894 AF371718 clone p-3198-SwA-3 prokMSA_id:049003 AF371719 clone p-2571-9F5 prokMSA_id:072853 AF376215 ckncm311-B3-45 prokMSA_id:019049 AF376216 ckncm312-B6-5 prokMSA_id:029734 AF376387 ckncm154-F1M.1H1 prokMSA_id:028818 AF376437 ckncm204-F4M.1D1 prokMSA_id:056565 AF530318 clone cadhufec030h7 prokMSA_id:061044 AF530354 clone cadhufec18d05sav prokMSA_id:021362 AJ408989 clone HuCB5 prokMSA_id:082053 AY169427 Faecalibacterium prausnitzii clone 1-79 prokMSA_id:081552 AY169429 Faecalibacterium prausnitzii clone 1-84 prokMSA_id:081198 AY169430 Faecalibacterium prausnitzii clone 1-88 prokMSA_id:092829 AY343143 clone REC1M_6 prokMSA_id:092157 AY343144 clone REC1M_12 prokMSA_id:092881 AY343145 clone REC1M_33 prokMSA_id:092957 AY343147 clone REC1M_85 prokMSA_id:092397 AY343148 clone REC1M_64 prokMSA_id:092547 AY343149 clone REC1M_7 prokMSA_id:092254 AY343150 clone REC1M_61 prokMSA_id:092569 AY343151 clone REC1M_20 prokMSA_id:093088 AY343168 clone REC1M_69 prokMSA_id:092106 AY343169 clone REC1M_73 prokMSA_id:093116 AY343180 clone REC6M_83 prokMSA_id:092053 AY343207 clone REC6M_97 prokMSA_id:093090 AY343221 clone REC6M_63 prokMSA_id:092052 AY343245 clone DONOR_29 prokMSA_id:092415 AY343246 clone DONOR_75 prokMSA_id:092119 AY343247 clone DONOR_71 prokMSA_id:092294 AY343287 clone DONOR_37 prokMSA_id:092408 AY343288 clone DONOR_92 prokMSA_id:093124 AY343289 clone DONOR_73 prokMSA_id:092782 AY343290 clone DONOR_76 prokMSA_id:093081 AY343291 clone DONOR_89 prokMSA_id:092284 AY343300 clone DONOR_91 prokMSA_id:092612 AY343301 clone DONOR_1 prokMSA_id:092919 AY343302 clone DONOR_11 prokMSA_id:095706 AY388433 clone Adhuleft13 2.30.9.1.3.342 OTU 1 seq prokMSA_id:092165 AY343152 clone REC1M_74 2.30.9.1.3.344 OTU 5 seqs prokMSA_id:092230 AY343153 clone REC1M_18 prokMSA_id:093009 AY343154 clone REC1M_77 prokMSA_id:096545 AY388439 clone Adhuleft32 prokMSA_id:016053 L76596 Ruminococcus callidus ATCC 27760 . prokMSA_id:016054 X85100 Ruminococcus callidus. 2.30.9.1.3.345 OTU 3 seqs prokMSA_id:092960 AY343173 clone REC6M_56 prokMSA_id:092700 AY343174 clone REC6M_96 prokMSA_id:092588 AY343206 clone REC6M_21 2.30.9.1.3.346 OTU 1 seq prokMSA_id:092600 AY343158 clone REC1M_23 2.30.9.1.3.347 OTU 1 seq prokMSA_id:092607 AY343178 clone REC6M_86 2.30.9.1.3.349 OTU 6 seqs prokMSA_id:027791 AF371800 clone p-2053-s959-5 prokMSA_id:061046 AF530352 clone cadhufec18c11sav prokMSA_id:016652 AJ408991 clone HuCB7 prokMSA_id:093154 AY343160 clone REC1M_21 prokMSA_id:092937 AY343231 clone REC6M_71 prokMSA_id:096892 AY388444 clone Adhuleft52 2.30.9.1.3.350 OTU 4 seqs prokMSA_id:094504 AJ515914 Ruminococcus sp. 7L75 prokMSA_id:094902 AJ515915 Ruminococcus sp. 25F8 prokMSA_id:094758 AJ515916 Ruminococcus sp. 25F6 prokMSA_id:094496 AJ515917 Ruminococcus sp. 25F7 2.30.9.1.3.351 OTU 1 seq prokMSA_id:094509 AY368612 clone nc-21 2.30.9.1.3.352 OTU 2 seqs prokMSA_id:095528 AY160797 clone COB P5-10 prokMSA_id:097725 AY160798 clone COB P5-24 2.30.9.1.3.353 OTU 1 seq prokMSA_id:095803 AY160805 clone COB P1-19 2.30.9.1.3.354 OTU 1 seq prokMSA_id:095888 AY160809 clone COB P3-7 2.30.9.1.3.355 OTU 1 seq prokMSA_id:095995 AY239450 clone rc2-36 complete 2.30.9.1.3.356 OTU 1 seq prokMSA_id:096534 AY160800 clone COB P1-9 2.30.9.1.3.357 OTU 1 seq prokMSA_id:096547 AY160810 clone COB P3-12 2.30.9.1.3.358 OTU 1 seq prokMSA_id:096617 AY160807 clone COB P1-30 2.30.9.1.3.359 OTU 1 seq prokMSA_id:097093 AY160843 clone COB P4-30 2.30.9.1.3.360 OTU 1 seq prokMSA_id:097570 AY160808 clone COB P3-6 2.30.9.1.3.361 OTU 1 seq prokMSA_id:097661 AY160804 clone COB P1-18 2.30.9.1.3.362 OTU 1 seq prokMSA_id:098246 AY160799 clone COB P1-6 2.30.9.1.3.363 OTU 1 seq prokMSA_id:098332 AY239443 clone rc5-6 complete 2.30.9.1.3.364 OTU 1 seq prokMSA_id:098463 AY160803 clone COB P1-15 2.30.9.1.3.365 OTU 1 seq prokMSA_id:098511 AY160811 clone COB P3-17 2.30.9.1.3.366 OTU 1 seq prokMSA_id:098517 AY160814 clone COB P3-29 2.30.9.1.3.367 OTU 1 seq prokMSA_id:098740 AY160806 clone COB P1-24 2.30.9.1.3.368 OTU 1 seq prokMSA_id:098748 AY160795 clone COB P3-1 2.30.9.1.3.369 OTU 1 seq prokMSA_id:098757 AY160839 clone COB P1-5 2.30.9.1.3.999 poor quality 417 seqs prokMSA_id:055276 AB064710 firmicute clone:NS2D7 prokMSA_id:062170 AB064780 Ruminococcus sp. clone:NO25 prokMSA_id:062169 AB064781 firmicute clone:NS2H9 prokMSA_id:062168 AB064782 firmicute clone:NB2C3 prokMSA_id:062167 AB064783 firmicute clone:NB5F9 prokMSA_id:062166 AB064784 firmicute clone:NO2-21 prokMSA_id:062164 AB064785 firmicute clone:NO2-14 prokMSA_id:062165 AB064786 firmicute clone:NO2-56 prokMSA_id:070030 AB064787 firmicute clone:NO75 prokMSA_id:069540 AB064788 firmicute clone:NS1C6 prokMSA_id:056085 AB064789 firmicute clone:NB5G6 prokMSA_id:062163 AB064790 firmicute clone:NS2E4 prokMSA_id:062162 AB064791 firmicute clone:NO56 prokMSA_id:062161 AB064792 firmicute clone:NS1E12 prokMSA_id:062160 AB064793 Fusobacterium sp. clone:NB2E1 prokMSA_id:056045 AB064794 Fusobacterium sp. clone:NO47 prokMSA_id:062159 AB064795 Fusobacterium sp. clone:NS2A1 prokMSA_id:062158 AB064796 firmicute clone:NS4D4 prokMSA_id:062157 AB064797 firmicute clone:NB2A12 prokMSA_id:062156 AB064798 firmicute clone:NO1 prokMSA_id:074630 AB064799 firmicute clone:NS1B1 prokMSA_id:062155 AB064800 firmicute clone:NO10 prokMSA_id:062154 AB064801 firmicute clone:NB5C2 prokMSA_id:062153 AB064802 firmicute clone:NB4C12 prokMSA_id:056325 AB064803 firmicute clone:NB5C6 prokMSA_id:062152 AB064804 firmicute clone:NO2-41 prokMSA_id:062151 AB064805 firmicute clone:NO2-23 prokMSA_id:062150 AB064806 Ruminococcus sp. clone:NB4C5 prokMSA_id:062147 AB064807 Ruminococcus sp. clone:NO5 prokMSA_id:056106 AB064808 Ruminococcus sp. clone:NO11 prokMSA_id:062149 AB064809 Ruminococcus sp. clone:NB2B6 prokMSA_id:062148 AB064810 Ruminococcus sp. clone:NB2F11 prokMSA_id:056337 AB064811 firmicute clone:NS4G9 prokMSA_id:062071 AB064904 Ruminococcus sp. CO47 prokMSA_id:069218 AB064905 Clostridium sp. CS29 prokMSA_id:062068 AB064906 Human intestinal firmicute CO19 prokMSA_id:062065 AB064907 Fusobacterium sp. CB14 prokMSA_id:062066 AB064908 Fusobacterium sp. CO5 prokMSA_id:062064 AB064909 Fusobacterium sp. CO6 prokMSA_id:062063 AB064910 Human intestinal firmicute CB47 prokMSA_id:065311 AB075612 chicken cecal clone:2B11 prokMSA_id:072117 AB075613 chicken cecal clone:2F12 prokMSA_id:069502 AB075614 chicken cecal clone:1G2 prokMSA_id:065310 AB075615 chicken cecal clone:1H12 prokMSA_id:069286 AB075616 chicken cecal clone:1C5 prokMSA_id:070138 AB075617 chicken cecal clone:2A10 prokMSA_id:065308 AB075618 chicken cecal clone:2C3 prokMSA_id:065307 AB075619 chicken cecal clone:2F1 prokMSA_id:065309 AB075620 chicken cecal clone:1D8 prokMSA_id:065306 AB075621 chicken cecal clone:2H6 prokMSA_id:065305 AB075622 chicken cecal clone:1A9 prokMSA_id:065304 AB075623 chicken cecal clone:2B7 prokMSA_id:065303 AB075624 chicken cecal clone:2D8 prokMSA_id:065302 AB075625 chicken cecal clone:1A8 prokMSA_id:065261 AB075676 Firmicutes str. C34 prokMSA_id:065262 AB075677 Firmicutes str. C29 prokMSA_id:058727 AB080847 human intestinal clone:1D4 prokMSA_id:058726 AB080848 human intestinal clone:JW1C7 prokMSA_id:058725 AB080849 human intestinal clone:1B12 prokMSA_id:058719 AB080853 human intestinal clone:JW2D11 prokMSA_id:056174 AB080854 human intestinal clone:JW1C11 prokMSA_id:058723 AB080855 human intestinal clone:JW2A8 prokMSA_id:058721 AB080856 human intestinal clone:JW1G9 prokMSA_id:069284 AB080857 human intestinal clone:JW2G1 prokMSA_id:071883 AB080858 human intestinal clone:JW1D6 prokMSA_id:056076 AB080895 Human intestinal firmicute CJ7 prokMSA_id:058145 AB080896 Human intestinal firmicute CJ36 prokMSA_id:071657 AB080897 Human intestinal firmicute CJ31 prokMSA_id:058692 AB080898 Human intestinal firmicute CJ6 prokMSA_id:087136 AB099717 clone: OLDA-D3 prokMSA_id:087281 AB099718 clone: OLDA-G11 prokMSA_id:087438 AB099719 clone: OLDC-A11 prokMSA_id:086848 AB099720 clone: OLDA-E4 prokMSA_id:086798 AB099721 clone: OLDA-H2 prokMSA_id:086904 AB099722 clone: OLDB-B7 prokMSA_id:087946 AB099724 clone: OLDB-A11 prokMSA_id:087518 AB099725 clone: OLDC-D12 prokMSA_id:087074 AB099726 clone: OLDA-D11 prokMSA_id:087842 AB099727 clone: OLDA-F4 prokMSA_id:087010 AB099728 clone: OLDC-E8 prokMSA_id:087939 AB099729 clone: OLDB-E2 prokMSA_id:087219 AB099730 clone: OLDC-G5 prokMSA_id:087163 AB099731 clone: OLDA-D5 prokMSA_id:087864 AB099732 clone: OLDA-B3 prokMSA_id:087251 AB099733 clone: OLDC-H8 prokMSA_id:086972 AB099734 clone: OLDB-E4 prokMSA_id:087168 AB099779 clone: OLDB-H1 prokMSA_id:094569 AB120814 Gram-positive clone:MC81F05 prokMSA_id:094935 AB120815 Gram-positive clone:MC42B07 prokMSA_id:094959 AB120816 Gram-positive clone:MC81D03 prokMSA_id:094501 AB120817 Gram-positive clone:MC81E02 prokMSA_id:094754 AB120818 Gram-positive clone:MC42E07 prokMSA_id:094544 AB120819 Gram-positive clone:MC82E09 prokMSA_id:094779 AB120820 Gram-positive clone:MC42A07 prokMSA_id:094839 AB120821 Gram-positive clone:MC81E04 prokMSA_id:094636 AB120822 Gram-positive clone:MC81G06 prokMSA_id:074587 AF052408 A03 complete prokMSA_id:025327 AF052411 A10 prokMSA_id:016020 AF052420 clone A27. prokMSA_id:031080 AF104836 Ruminococcus flavefaciens strain LP9155 prokMSA_id:040017 AF104838 Ruminococcus flavefaciens strain AR47 prokMSA_id:033711 AF104840 Ruminococcus flavefaciens strain AR69 prokMSA_id:049677 AF104842 Ruminococcus flavefaciens strain B146 prokMSA_id:039073 AF104843 Ruminococcus albus strain B199 prokMSA_id:020373 AF104845 Ruminococcus albus strain SY3 prokMSA_id:042175 AF104847 Ruminococcus flavefaciens strain R13e2 prokMSA_id:021842 AF175622 WJGRT-82 prokMSA_id:073173 AF175649 WJGRT-148 prokMSA_id:017023 AF175655 WJGRT-158 prokMSA_id:028864 AF175674 WJGRT-217 prokMSA_id:031373 AF181914 clone 5d/11 prokMSA_id:029478 AF261792 swine feces F23 prokMSA_id:074536 AF261796 manure pit P35 prokMSA_id:037164 AF261808 manure pit P322 prokMSA_id:049901 AF284555 Hydrogen production community clone HPB-G1-11 prokMSA_id:038428 AF284558 Hydrogen production community clone HPB-G1-5 prokMSA_id:026620 AF293922 rumen clone 20 prokMSA_id:043929 AF376186 ckncm282-m8h6 prokMSA_id:048021 AF376187 ckncm283-2m5h8 prokMSA_id:026153 AF376188 ckncm284-m5c9 prokMSA_id:035116 AF376190 ckncm286-2c5e14 prokMSA_id:026943 AF376191 ckncm287-c5c5 prokMSA_id:020692 AF376303 ckncm070-A22.A4 prokMSA_id:054688 AF376311 ckncm078-A32.A4 prokMSA_id:047765 AF376324 ckncm091-A32.G7 prokMSA_id:040079 AF376335 ckncm102-B412.2C8 prokMSA_id:053323 AF376338 ckncm105-B412.2E2 prokMSA_id:042367 AF376346 ckncm113-B52.F8 prokMSA_id:027838 AF376348 ckncm115-B52.H9 prokMSA_id:028931 AF376349 ckncm116-C21.A10 prokMSA_id:051393 AF376355 ckncm122-C21.F1 prokMSA_id:031614 AF376360 ckncm127-F1M.1A11 prokMSA_id:042540 AF376366 ckncm133-F1M.1B8 prokMSA_id:034994 AF376369 ckncm136-F1M.1C5 prokMSA_id:033119 AF376373 ckncm140-F1M.1D12 prokMSA_id:033094 AF376380 ckncm147-F1M.1F6 prokMSA_id:048360 AF376392 ckncm159-F3M.2A6 prokMSA_id:028991 AF376393 ckncm160-F3M.2A9 prokMSA_id:047531 AF376394 ckncm161-F3M.1B1 prokMSA_id:048298 AF376402 ckncm169-F3M.2E1 prokMSA_id:048260 AF376411 ckncm178-F3M.1F11 prokMSA_id:051465 AF376412 ckncm179-F3M.2F4 prokMSA_id:049956 AF376415 ckncm182-F3M.1G1 prokMSA_id:031200 AF376417 ckncm184-F3M.1G4 prokMSA_id:045760 AF376427 ckncm194-F4M.1A5 prokMSA_id:034451 AF376444 ckncm211-F4M.1F7 prokMSA_id:039793 AF376445 ckncm212-F4M.1G1 prokMSA_id:037988 AF376448 ckncm215-F4M.1H12 prokMSA_id:031707 AF376450 ckncm217-F4M.1H5 prokMSA_id:033937 AF376453 ckncm220-F4M.2A3 prokMSA_id:029951 AF376459 ckncm226-F4M.2E2 prokMSA_id:035607 AF376460 ckncm227-F4M.2E4 prokMSA_id:030199 AF376462 ckncm229-F4M.2F5 prokMSA_id:048889 AF376464 ckncm231-F4M.2G2 prokMSA_id:032636 AF390941 clone ICBTG1 prokMSA_id:033955 AF400097 Da3-39 prokMSA_id:039536 AF401543 clone g4W7 prokMSA_id:051204 AF401544 clone g4P3 prokMSA_id:032351 AF401545 clone g4H6 prokMSA_id:030558 AF401546 clone g4H4 prokMSA_id:033901 AF401547 clone g4C2 prokMSA_id:029331 AF401548 clone g4Br3 prokMSA_id:045294 AF401549 clone g4B3 prokMSA_id:036616 AF427923 clone 6F prokMSA_id:052233 AF427945 clone 9A prokMSA_id:019302 AF429368 CCAJG171 prokMSA_id:037649 AF429374 CCAJG147 prokMSA_id:051458 AF445202 Swine fecal FPC67 prokMSA_id:052713 AF445206 Swine fecal FPC63 prokMSA_id:019817 AF445207 Swine fecal FPC110 prokMSA_id:019249 AF445242 Swine manure pit PPC78 prokMSA_id:086170 AF499902 clone ABLCf5 prokMSA_id:061094 AF530295 clone cadhufec007h7 prokMSA_id:061092 AF530298 clone cadhufec021h7 prokMSA_id:061088 AF530299 clone cadhufec022h7 prokMSA_id:061086 AF530303 clone cadhufec063h7 prokMSA_id:061084 AF530305 clone cadhufec066h7 prokMSA_id:061083 AF530306 clone cadhufec068h7 prokMSA_id:071985 AF530307 clone cadhufec074h7 prokMSA_id:055986 AF530313 clone cadhufec099h7 prokMSA_id:061076 AF530315 clone cadhufec121h7 prokMSA_id:061025 AF530372 clone cadhufec32c10 prokMSA_id:058800 AF540048 DGGE gel band ESR BR 13 prokMSA_id:074087 AF544915 Gram-positive clone 1-6-8 prokMSA_id:055367 AF544916 Gram-positive clone 1-6-9 prokMSA_id:035679 AJ241729 microorganism clone Cal61 prokMSA_id:045256 AJ241730 microorganism clone Cal62 prokMSA_id:048515 AJ241732 microorganism clone Cal65 prokMSA_id:029472 AJ241745 microorganism clone Col89 prokMSA_id:052653 AJ241748 microorganism clone Col97 prokMSA_id:041709 AJ241749 microorganism clone Col98 prokMSA_id:020546 AJ241774 microorganism clone Cow31 prokMSA_id:033543 AJ241776 microorganism clone Cow34 prokMSA_id:043073 AJ287682 low G+C Gram-positive 20ev prokMSA_id:069221 AJ287703 low G+C Gram-positive 248ev prokMSA_id:055287 AJ287705 low G+C Gram-positive 437ev prokMSA_id:069336 AJ287706 low G+C Gram-positive 53ev prokMSA_id:042518 AJ287748 low G+C Gram-positive 10ev prokMSA_id:044448 AJ287749 low G+C Gram-positive 13ev prokMSA_id:045672 AJ289217 RSD1 prokMSA_id:027374 AJ295667 IrT-JG1-59 prokMSA_id:021195 AJ400270 clone L11-2 prokMSA_id:020223 AJ404584 Ruminococcus RM3 prokMSA_id:016665 AJ418943 clone k002 prokMSA_id:051560 AJ418944 clone k003 prokMSA_id:029305 AJ418945 clone k004 prokMSA_id:023787 AJ418948 clone k009 prokMSA_id:043703 AJ418950 clone k011 prokMSA_id:022173 AJ418951 clone k012 prokMSA_id:049312 AJ418952 clone k013 prokMSA_id:043790 AJ418953 clone k014 prokMSA_id:027645 AJ418954 clone k015 prokMSA_id:029053 AJ418958 clone k026 prokMSA_id:034767 AJ418960 clone k031 prokMSA_id:030000 AJ418962 clone k038 prokMSA_id:042448 AJ418963 clone k039 prokMSA_id:074584 AJ418965 clone k044 prokMSA_id:047828 AJ418968 clone k050 prokMSA_id:030937 AJ418969 clone k052 prokMSA_id:018192 AJ418970 clone k053 prokMSA_id:041368 AJ418975 clone k059 prokMSA_id:047246 AJ418980 clone k070 prokMSA_id:043756 AJ418981 clone k072 prokMSA_id:023407 AJ418984 clone k082 prokMSA_id:038387 AJ418985 clone k083 prokMSA_id:016364 AJ418986 clone k086 prokMSA_id:037052 AJ418989 clone k091 prokMSA_id:049979 AJ418992 clone kl001 prokMSA_id:046546 AJ418996 clone kl008 prokMSA_id:045504 AJ418997 clone kl009 prokMSA_id:019247 AJ418999 clone kl011 prokMSA_id:034342 AJ419004 clone kl016 prokMSA_id:052138 AJ419006 clone kl018 prokMSA_id:044169 AJ419008 clone kl023 prokMSA_id:031756 AJ419016 clone kl041 prokMSA_id:047501 AJ419024 clone kl063 prokMSA_id:022593 AJ419028 clone kl071 prokMSA_id:029067 AJ419032 clone kl077 prokMSA_id:042035 AJ419034 clone kl079 prokMSA_id:029159 AJ419038 clone kl084 prokMSA_id:025965 AJ419040 clone kl090 prokMSA_id:033464 AJ419043 clone kl094 prokMSA_id:034213 AJ419062 clone kl147 prokMSA_id:043383 AJ419065 clone kl154 prokMSA_id:024946 AJ419067 clone kl159 prokMSA_id:049785 AJ419068 clone kl160 prokMSA_id:026870 AJ419070 clone kl170 prokMSA_id:023007 AJ419073 clone kl201 prokMSA_id:030255 AJ419075 clone kl215 prokMSA_id:018311 AJ419080 clone kl255 prokMSA_id:040958 AJ419082 clone kl305 prokMSA_id:046626 AJ419086 clone k051 prokMSA_id:062600 AJ504520 isolate P1CN59 prokMSA_id:062518 AJ504614 isolate P2CN77 prokMSA_id:057248 AJ518250 clone Mul2P2-54 prokMSA_id:082128 AJ549102 clone E8 prokMSA_id:082155 AJ549103 clone E27 prokMSA_id:082363 AJ549104 clone E23 prokMSA_id:056384 AY006533 rumen prokMSA_id:047116 AY006541 rumen prokMSA_id:044123 AY006559 rumen prokMSA_id:037309 AY006579 rumen prokMSA_id:029466 AY006604 rumen prokMSA_id:051316 AY006610 rumen prokMSA_id:023418 AY006613 rumen prokMSA_id:048797 AY006616 rumen prokMSA_id:017986 AY006618 rumen prokMSA_id:047959 AY006619 rumen prokMSA_id:034371 AY006621 rumen prokMSA_id:038615 AY006623 rumen prokMSA_id:025621 AY006626 rumen prokMSA_id:024963 AY006627 rumen prokMSA_id:045904 AY006628 rumen prokMSA_id:040642 AY006629 rumen prokMSA_id:034041 AY006630 rumen prokMSA_id:037604 AY006634 rumen prokMSA_id:028538 AY006635 rumen prokMSA_id:039387 AY006638 rumen prokMSA_id:027826 AY006639 rumen prokMSA_id:048255 AY006642 rumen prokMSA_id:031212 AY006643 rumen prokMSA_id:050929 AY006644 rumen prokMSA_id:018884 AY006646 rumen prokMSA_id:073397 AY006648 rumen prokMSA_id:040487 AY006649 rumen prokMSA_id:045675 AY006676 rumen prokMSA_id:042625 AY006677 rumen prokMSA_id:019770 AY006687 rumen prokMSA_id:055906 AY006704 rumen prokMSA_id:047139 AY006706 rumen prokMSA_id:030538 AY006714 rumen prokMSA_id:041330 AY006719 rumen prokMSA_id:048418 AY006723 rumen prokMSA_id:052103 AY006726 rumen prokMSA_id:036960 AY006727 rumen prokMSA_id:069090 AY006730 rumen prokMSA_id:026389 AY006751 rumen prokMSA_id:026579 AY006764 rumen prokMSA_id:020801 AY006768 rumen prokMSA_id:032926 AY006792 rumen prokMSA_id:056404 AY006793 rumen prokMSA_id:039032 AY006795 rumen prokMSA_id:038831 AY006799 rumen prokMSA_id:023537 AY006820 rumen prokMSA_id:051468 AY006825 rumen prokMSA_id:036372 AY006832 rumen prokMSA_id:051752 AY006833 rumen prokMSA_id:031037 AY006837 rumen prokMSA_id:048510 AY006839 rumen prokMSA_id:069318 AY006860 rumen prokMSA_id:026676 AY006864 rumen prokMSA_id:051745 AY006881 rumen prokMSA_id:040851 AY006890 rumen prokMSA_id:046853 AY006918 rumen prokMSA_id:044431 AY029590 Clostridium sp. clone HPG-S-10 prokMSA_id:084614 AY092301 clone BM5 prokMSA_id:084093 AY092309 clone BM64 prokMSA_id:086448 AY092310 clone BM95 prokMSA_id:082653 AY092311 clone BM87 prokMSA_id:084696 AY092312 clone BM94 prokMSA_id:085646 AY092313 clone BM122 prokMSA_id:084721 AY092314 clone BM141 prokMSA_id:082589 AY092315 clone BM88 prokMSA_id:084972 AY092316 clone BM86 prokMSA_id:084343 AY092325 clone BM90 prokMSA_id:083973 AY092326 clone BF106 prokMSA_id:098569 AY160801 clone COB P3-2 prokMSA_id:097131 AY160802 clone COB P1-7 prokMSA_id:095784 AY160812 clone COB P3-23 prokMSA_id:096281 AY160813 clone COB P3-24 prokMSA_id:095457 AY160840 clone COB P4-14 prokMSA_id:095985 AY160841 clone COB P1-1 prokMSA_id:082318 AY193970 clone SC165 prokMSA_id:081850 AY217390 LTCE-T2A 3B prokMSA_id:097719 AY239423 clone rc1-50 complete prokMSA_id:098195 AY239434 clone rc2-40 complete prokMSA_id:097263 AY239436 clone rc3-23 complete prokMSA_id:095424 AY239438 clone rc3-49 complete prokMSA_id:098029 AY239439 clone rc4-48 complete prokMSA_id:095502 AY239442 clone rc5-48 complete prokMSA_id:098876 AY239445 clone rc1-20 complete prokMSA_id:097210 AY239446 clone rc1-33 complete prokMSA_id:098091 AY239447 clone rc1-41 complete prokMSA_id:097312 AY239448 clone rc1-6 complete prokMSA_id:095256 AY239449 clone rc1-8 complete prokMSA_id:095589 AY239451 clone rc4-30 complete prokMSA_id:095570 AY239453 clone rc4-42 complete prokMSA_id:095503 AY239455 clone rc1-34 complete prokMSA_id:098048 AY239458 clone rc2-233 complete prokMSA_id:084684 AY244475 Oscillospira sp. G prokMSA_id:084494 AY244476 Oscillospira sp. F prokMSA_id:084733 AY244477 Oscillospira sp. E prokMSA_id:085966 AY244478 Oscillospira sp. D prokMSA_id:085544 AY244480 Oscillospira sp. B prokMSA_id:083086 AY244481 Oscillospira sp. A prokMSA_id:083991 AY244482 Oscillospira sp. H prokMSA_id:083822 AY256583 DGGE band B2-15 prokMSA_id:083517 AY256621 DGGE band S5-6 prokMSA_id:087041 AY261409 clone RFLP U51 prokMSA_id:090424 AY311618 clone YRCB18 prokMSA_id:090343 AY311629 clone YRCB40 prokMSA_id:088545 AY311631 clone YRCB43 prokMSA_id:088932 AY311648 clone YRCC12 prokMSA_id:090364 AY311666 clone YRCC45 prokMSA_id:089413 AY311672 clone YRCC52 prokMSA_id:090181 AY311681 clone YRCD07 prokMSA_id:088627 AY311685 clone YRCD15 prokMSA_id:089084 AY311712 clone YRCD57 prokMSA_id:089679 AY311718 clone YRCE06 prokMSA_id:090193 AY311719 clone YRCE09 prokMSA_id:090485 AY311738 clone YRCE35 prokMSA_id:088084 AY311741 clone YRCE40 prokMSA_id:088116 AY311742 clone YRCE42 prokMSA_id:089591 AY311746 clone YRCE48 prokMSA_id:090014 AY311753 clone YRCE56 prokMSA_id:088495 AY311754 clone YRCE57 prokMSA_id:088285 AY311755 clone YRCE58 prokMSA_id:088091 AY311778 clone YRCF21 prokMSA_id:090368 AY315198 rumen clone JRCG04 prokMSA_id:088717 AY315237 rumen clone JRCH14 prokMSA_id:089582 AY315299 rumen clone JRCI68 prokMSA_id:088609 AY315346 rumen clone JRCK11 prokMSA_id:088658 AY315382 rumen clone JRCK65 prokMSA_id:089843 AY315384 rumen clone JRCK67 prokMSA_id:091547 AY332392 Clostridiaceae rennanqilyf12 prokMSA_id:092242 AY343146 clone REC1M_53 prokMSA_id:092398 AY343155 clone REC1M_3 prokMSA_id:093647 AY363375 Clostridium sp. rennanqilfy3 prokMSA_id:094077 AY367006 Ruminococcus sp. YE71 prokMSA_id:096774 AY388416 clone Adhuright52 prokMSA_id:095194 AY388446 clone Adhuleft65 prokMSA_id:016056 L34618 desmolans ATCC 43058 . prokMSA_id:016044 L34625 siraeum ATCC 29066 . prokMSA_id:016055 L76600 Ruminococcus bromii ATCC 27255 . prokMSA_id:016024 M59095 Clostridium leptum ATCC 29065 . prokMSA_id:037122 U58217 low G+C gram-positive small subunit prokMSA_id:038076 U58222 low G+C gram-positive small subunit prokMSA_id:053455 U58224 low G+C gram-positive small subunit prokMSA_id:030458 U81654 clone vadinBA36 prokMSA_id:039637 U81661 clone vadinBB18 prokMSA_id:017993 U81667 clone vadinBB42 prokMSA_id:048188 U81677 clone vadinBC24 prokMSA_id:027658 U81682 clone vadinBE04 prokMSA_id:036672 U81696 clone vadinBE27 prokMSA_id:038115 U81697 clone vadinBE16 prokMSA_id:049187 U81710 clone vadinHA19 prokMSA_id:018578 U81713 clone vadinHA10 prokMSA_id:048165 U81714 clone vadinHA08 prokMSA_id:016421 U81734 clone vadinHA72 prokMSA_id:044378 U81743 clone vadinHB33 prokMSA_id:022271 U81748 clone vadinHB09 prokMSA_id:049797 U81752 clone vadinHB78 prokMSA_id:024327 U81768 clone vadinCA23 prokMSA_id:016071 X66002 Clostridium sporosphaeroides. prokMSA_id:016028 Z77445 str. 1-700 C19. prokMSA_id:040469 Z77593 1-700 C46 prokMSA_id:040342 Z77598 1-700 C9 2.30.9.1.4 STR.16SX_SUBGROUP 34 seqs 2.30.9.1.4.001 OTU 1 seq prokMSA_id:033347 AB062820 clone:BCf4-07 2.30.9.1.4.002 OTU 1 seq prokMSA_id:039726 AF323772 clone BA089 complete 2.30.9.1.4.003 OTU 1 seq prokMSA_id:043679 AJ229231 from anoxic bulk soil clone BSV87 2.30.9.1.4.004 OTU 1 seq prokMSA_id:066196 AJ488067 clone IA-10 2.30.9.1.4.005 OTU 2 seqs prokMSA_id:016085 U27710 str. 16SX-1. prokMSA_id:016082 U27711 str. 16SX-2. 2.30.9.1.4.006 OTU 1 seq prokMSA_id:016083 AF050584 clone WCHA1-53. 2.30.9.1.4.007 OTU 1 seq prokMSA_id:016084 AJ229251 Clostridium FCB90-3 str. FCB90-3. 2.30.9.1.4.008 OTU 1 seq prokMSA_id:016086 AJ009493 clone SJA-136. 2.30.9.1.4.009 OTU 1 seq prokMSA_id:016087 AJ240981 clone Sva0855. 2.30.9.1.4.010 OTU 4 seqs prokMSA_id:079618 AY161236 clone SSADM_EE5 prokMSA_id:080738 AY161239 clone SSADM_EE3 prokMSA_id:080746 AY161240 clone SSADM_ED5 prokMSA_id:080012 AY161247 clone SSADM_EG12 2.30.9.1.4.011 OTU 1 seq prokMSA_id:084131 AB092852 clone:ALU10 2.30.9.1.4.012 OTU 3 seqs prokMSA_id:086089 AB092853 clone:ALU11 prokMSA_id:084265 AB092900 clone:AHU15 prokMSA_id:084659 AB092901 clone:AHU16 2.30.9.1.4.013 OTU 1 seq prokMSA_id:085027 AY239570 clone CARB_ER2_15 2.30.9.1.4.014 OTU 1 seq prokMSA_id:085586 AB092899 clone:AHU14 2.30.9.1.4.015 OTU 1 seq prokMSA_id:093440 AJ582199 firmicute clone Gitt-GS-113 2.30.9.1.4.016 OTU 1 seq prokMSA_id:093487 AJ582204 firmicute clone Gitt-GS-116 2.30.9.1.4.999 poor quality 12 seqs prokMSA_id:044413 AF390940 clone ICBTA2 prokMSA_id:040705 AF414567 clone P3IB-22 prokMSA_id:067453 AF493282 clone pHS12 prokMSA_id:017178 AJ006091 clone TBS19 prokMSA_id:060141 AJ347076 clone TK63 prokMSA_id:073129 AJ347087 clone TK101 prokMSA_id:086005 AY092306 clone BM163 prokMSA_id:085495 AY092307 clone BM164 prokMSA_id:083173 AY092308 clone BF63 prokMSA_id:066833 AY096179 clone F2-57 prokMSA_id:079911 AY161248 clone SSADM_EG3 prokMSA_id:047507 U81759 clone vadinHB46 2.30.9.2 C.BOTULINUM_GROUP 685 seqs 2.30.9.2.1 CCS.OWENSENSIS_SUBGROUP 23 seqs 2.30.9.2.1.001 OTU 1 seq prokMSA_id:019538 AJ252692 Rhizosphere soil clone RSC-II-71 2.30.9.2.1.002 OTU 1 seq prokMSA_id:016088 U80596 Caldicellulosiruptor owensensis str. OL ATCC 700167 . 2.30.9.2.1.003 OTU 4 seqs prokMSA_id:016096 L09184 str. Rt8.B7. prokMSA_id:016102 L09185 str. Rt8. B15. prokMSA_id:016092 L09186 str. Ok9.B1. prokMSA_id:016089 L35151 str. Rt8B.4. 2.30.9.2.1.004 OTU 1 seq prokMSA_id:016091 X93020 str. SP83. 2.30.9.2.1.005 OTU 2 seqs prokMSA_id:016093 L09183 Thermoanaerobacter "cellulolyticus" str. NA 10 IFO 14436. prokMSA_id:016100 L09183 Thermoanaerobacter "cellulolyticus" str. NA 10 IFO 14436. 2.30.9.2.1.006 OTU 2 seqs prokMSA_id:016095 AJ004811 Caldicellulosiruptor kristjanssonii str. I77R1B. prokMSA_id:016094 X82842 Caldicellulosiruptor lactoaceticus str. 6A DSM 9545 . 2.30.9.2.1.007 OTU 2 seqs prokMSA_id:016098 L09178 Caldicellulosiruptor saccharolyticus str. Tp8T.6.3.3.1 ATCC 43494 prokMSA_id:016099 L09179 str. COMP.B1. 2.30.9.2.1.008 OTU 2 seqs prokMSA_id:016104 L09181 str. RI2.B1. prokMSA_id:016101 L09182 str. Wai35 B1. 2.30.9.2.1.009 OTU 2 seqs prokMSA_id:016103 L09180 "Anaerocellum thermophilum" str. Z-1203 ?. prokMSA_id:016105 L09180 "Anaerocellum thermophilum" str. Z-1203 ?. 2.30.9.2.1.010 OTU 1 seq prokMSA_id:075389 AF432626 clone S36.50SM 2.30.9.2.1.011 OTU 1 seq prokMSA_id:075748 AJ519400 actinobacterium clone JG37-AG-114 2.30.9.2.1.999 poor quality 4 seqs prokMSA_id:016097 AF027100 clone OPS35A. prokMSA_id:016090 AF130258 Caldicellulosiruptor saccharolyticus str. Tok7B.1. prokMSA_id:074069 AF209009 vent ML-14a prokMSA_id:025059 AF209010 vent ML-14b 2.30.9.2.2 OX.PFENNIGII 3 seqs 2.30.9.2.2.001 OTU 1 seq prokMSA_id:049771 AJ229181 from anoxic bulk soil clone BSV07 2.30.9.2.2.002 OTU 1 seq prokMSA_id:016106 X77838 Oxobacter pfennigii DSM 3222 . 2.30.9.2.2.999 poor quality 1 seq prokMSA_id:083707 AY092343 clone BI42 2.30.9.2.3 CLR.FERVIDUS_SUBGROUP 29 seqs 2.30.9.2.3.001 OTU 1 seq prokMSA_id:032182 Y18179 Clostridium cylindrosporum strain DSM 605 2.30.9.2.3.002 OTU 1 seq prokMSA_id:034407 AF181848 Caloramator viterbiensis 2.30.9.2.3.003 OTU 1 seq prokMSA_id:036208 AJ229227 from anoxic bulk soil clone BSV83 2.30.9.2.3.004 OTU 1 seq prokMSA_id:037282 AF414574 clone P3IU-61 2.30.9.2.3.005 OTU 5 seqs prokMSA_id:038722 AF286863 Caloramator sp. JW/JH-1 clone JH-5long prokMSA_id:068459 AF489534 Caloramator uzoniensis prokMSA_id:064744 AY102936 Caloramator uzoniensis prokMSA_id:016108 X75788 Caloramator indicus str. IndiB4 ACM 3982 . prokMSA_id:016107 X99238 Thermobrachium celer str. JW/YL-NZ35 . 2.30.9.2.3.006 OTU 1 seq prokMSA_id:045031 AJ229206 from anoxic bulk soil clone BSV54 2.30.9.2.3.007 OTU 1 seq prokMSA_id:046414 AJ229194 from anoxic bulk soil clone BSV34 2.30.9.2.3.008 OTU 1 seq prokMSA_id:065704 AF507681 soil clone C0119 2.30.9.2.3.009 OTU 2 seqs prokMSA_id:016112 AF013517 unnamed organism. prokMSA_id:065710 AF507679 soil clone C06 2.30.9.2.3.010 OTU 1 seq prokMSA_id:016109 X90488 Caloramator proteolyticus str. Uruguayensis. 2.30.9.2.3.011 OTU 1 seq prokMSA_id:016110 AF104215 Caloramator coolhaasii str. Z. 2.30.9.2.3.012 OTU 1 seq prokMSA_id:016111 L09187 Caloramator fervidus str. RT4. B1 ATCC 43204 . 2.30.9.2.3.013 OTU 1 seq prokMSA_id:077667 AB088992 clone:Rs-F81 2.30.9.2.3.014 OTU 1 seq prokMSA_id:086415 AY261814 Clostridiaceae clone PD-UASB-4 2.30.9.2.3.999 poor quality 10 seqs prokMSA_id:029096 AF175666 WJGRT-191 prokMSA_id:016833 AF286864 Caloramator sp. JW/JH-1 clone JH01-C06short prokMSA_id:065912 AF507403 soil clone C0201 prokMSA_id:065913 AF507405 soil clone C0212 prokMSA_id:057817 AF546978 clone E5-46-BH1-2/2/99-081 prokMSA_id:057807 AF546981 clone E5-46-BH1-2/2/99-084 prokMSA_id:057810 AF546984 clone E5-46-BH1-2/2/99-087 prokMSA_id:057809 AF546985 clone E5-46-BH1-2/2/99-088 prokMSA_id:042916 AJ244342 Riz1053 prokMSA_id:043117 AY037687 earthworm cast clone C032 2.30.9.2.4 C.HISTOLYTICUM_SUBGROUP 16 seqs 2.30.9.2.4.001 OTU 5 seqs prokMSA_id:094356 AY373333 clone Dpcom139 prokMSA_id:094433 AY373334 clone Dpcom140 prokMSA_id:095054 AY375567 clone Dpcom144 prokMSA_id:094976 AY386238 clone Dpcom148 prokMSA_id:016114 X73448 Clostridium proteolyticum ATCC 49002 . 2.30.9.2.4.002 OTU 1 seq prokMSA_id:094261 AY363380 Clostridium sp. rennanqilfy33 2.30.9.2.4.999 poor quality 10 seqs prokMSA_id:065270 AB075665 chicken cecal clone:1H5 prokMSA_id:041774 AF191232 Clostridium sp. 22 prokMSA_id:045469 AF261821 manure pit P627 prokMSA_id:072505 AF317382 feedlot manure B8 prokMSA_id:068106 AF365631 clone BM89DS1BA10 prokMSA_id:068096 AF365642 clone BM89DS1BbC9 prokMSA_id:068033 AF365718 clone BT60DS1BH5 prokMSA_id:036789 AF473981 firmicute 34-92 prokMSA_id:016113 M59094 Clostridium histolyticum ATCC 19401 . prokMSA_id:016115 M59096 Clostridium limosum ATCC 25620 . 2.30.9.2.5 C.THERMOBUTYRICUM_SUBGROUP 37 seqs 2.30.9.2.5.001 OTU 12 seqs prokMSA_id:022235 AB035087 Clostridium novyi prokMSA_id:029512 AB037910 Clostridium haemolyticum prokMSA_id:028961 AB041865 Clostridium novyi strain:ATCC27323 prokMSA_id:019010 AB041866 Clostridium novyi strain:ATCC19402 prokMSA_id:029673 AB045606 Clostridium novyi prokMSA_id:016126 L37590 Clostridium botulinum str. 2220 ATCC 17782. prokMSA_id:016127 L37591 Clostridium botulinum str. 2023 ATCC 17851. prokMSA_id:016124 L37594 Clostridium novyi str. 151 L.S. McClung ATCC 17861 . prokMSA_id:016128 X68187 Clostridium botulinum str. D 6f NCTC 8265. prokMSA_id:016123 X68188 Clostridium novyi str. A NCTC 538. prokMSA_id:016125 X68315 Clostridium botulinum str. 468 toxin C. prokMSA_id:023882 Y18173 Clostridium haemolyticum strain DSM 5565 2.30.9.2.5.002 OTU 1 seq prokMSA_id:022645 AF445650 clone SM1A11 2.30.9.2.5.003 OTU 1 seq prokMSA_id:023003 AF371834 clone p-2513-18B5 2.30.9.2.5.004 OTU 5 seqs prokMSA_id:035447 AF286862 Clostridium thermopalmarium prokMSA_id:016116 NONE Clostridium thermopalmarium DSM 5974 . prokMSA_id:016119 NONE Clostridium thermobutyricum. prokMSA_id:016118 X72868 Clostridium thermobutyricum str. Wiegel . prokMSA_id:016117 X72869 Clostridium thermopalmarium DSM 5974 . 2.30.9.2.5.005 OTU 1 seq prokMSA_id:059913 AY133082 spirochete clone ccslm210 2.30.9.2.5.006 OTU 1 seq prokMSA_id:066191 AJ488074 clone IA-23 2.30.9.2.5.007 OTU 2 seqs prokMSA_id:016120 X76744 Clostridium homopropionicum DSM 5847 . prokMSA_id:016121 X95274 Clostridium sp. LMG 16094. 2.30.9.2.5.008 OTU 1 seq prokMSA_id:016122 NONE Ilyobacter delafieldii str. 10cr1 DSM 5704 . 2.30.9.2.5.009 OTU 1 seq prokMSA_id:016129 X75272 Clostridium grantii str. A-1. 2.30.9.2.5.010 OTU 1 seq prokMSA_id:016130 AF129867 clone HB69. 2.30.9.2.5.011 OTU 1 seq prokMSA_id:016131 AF129865 clone HA16. 2.30.9.2.5.012 OTU 1 seq prokMSA_id:070947 AF407689 clone R27 2.30.9.2.5.013 OTU 1 seq prokMSA_id:078194 AB088963 Clostridiaceae clone:Rs-K21 2.30.9.2.5.014 OTU 1 seq prokMSA_id:091526 AY344408 clone K2-30-26 2.30.9.2.5.999 poor quality 7 seqs prokMSA_id:047537 AB059472 Clostridium sp. B40-2 prokMSA_id:056984 AJ518590 clone Qui4P2-52 prokMSA_id:085592 AY092240 clone BM84 prokMSA_id:086398 AY092241 clone BM17 prokMSA_id:085771 AY092242 clone BF4 prokMSA_id:083022 AY092327 clone BM43 prokMSA_id:045475 U81715 clone vadinHA05 2.30.9.2.6 C.BOTULINUM_SUBGROUP 62 seqs 2.30.9.2.6.001 OTU 1 seq prokMSA_id:016769 AJ387881 anoxSCC-25 2.30.9.2.6.002 OTU 2 seqs prokMSA_id:077654 AY170378 Clostridium ragsdalei prokMSA_id:017161 Y18178 Clostridium autoethanogenum strain DSM 10061 2.30.9.2.6.003 OTU 1 seq prokMSA_id:031072 AJ229222 from anoxic bulk soil clone BSV78 2.30.9.2.6.004 OTU 1 seq prokMSA_id:032495 AF145817 Metal-contaminated soil clone K20-14 2.30.9.2.6.005 OTU 1 seq prokMSA_id:032657 AF276452 clone RFLP 18E 2.30.9.2.6.006 OTU 1 seq prokMSA_id:034959 AJ237756 Clostridium acidisoli strain CK74 2.30.9.2.6.007 OTU 1 seq prokMSA_id:040746 AJ237755 Clostridium akagii strain CK58 2.30.9.2.6.008 OTU 2 seqs prokMSA_id:046249 AJ289212 RSb16 prokMSA_id:016138 X77835 Clostridium magnum DSM 2767 . 2.30.9.2.6.009 OTU 13 seqs prokMSA_id:016141 AF105402 Clostridium botulinum str. LP1284. prokMSA_id:088253 AY321656 Clostridium sp. MD2 prokMSA_id:016148 L37585 Clostridium botulinum ATCC 25763 . prokMSA_id:016147 L37586 Clostridium botulinum str. A2 VPI 14856. prokMSA_id:016134 L37587 Clostridium botulinum str. NCA 213 B ATCC 7949. prokMSA_id:016150 L37589 Clostridium botulinum str. B3 VPI 15021. prokMSA_id:016133 L37593 Clostridium botulinum str. 8G ATCC 25764. prokMSA_id:016149 X68172 Clostridium botulinum str. Langeland NCTC 10281. prokMSA_id:016143 X68185 Clostridium botulinum NCTC 7272. prokMSA_id:016154 X68186 Clostridium botulinum NCTC 7273. prokMSA_id:016140 X68189 Clostridium sporogenes str. 388 ATCC 3584 . prokMSA_id:016132 X73442 Clostridium putrificum str. 2318 ATCC 25784 . prokMSA_id:016139 X73844 Clostridium botulinum str. KYTO-F. 2.30.9.2.6.010 OTU 1 seq prokMSA_id:016142 M23930 Clostridium pasteurianum ATCC 6013 . 2.30.9.2.6.011 OTU 2 seqs prokMSA_id:016144 L08062 Clostridium tyrobutyricum NIZO 51. prokMSA_id:016153 M59113 Clostridium tyrobutyricum ATCC 25755 . 2.30.9.2.6.012 OTU 1 seq prokMSA_id:016145 AJ009473 clone SJA-65. 2.30.9.2.6.013 OTU 1 seq prokMSA_id:078095 AB088964 Clostridiaceae clone:Rs-N95 2.30.9.2.6.014 OTU 1 seq prokMSA_id:082741 AB092867 clone:ALU25 2.30.9.2.6.015 OTU 1 seq prokMSA_id:083208 AB092868 clone:ALU26 2.30.9.2.6.016 OTU 1 seq prokMSA_id:084948 AB092896 clone:AHU11 2.30.9.2.6.017 OTU 1 seq prokMSA_id:088514 AY321657 Clostridium sp. MD3 2.30.9.2.6.018 OTU 1 seq prokMSA_id:090094 AY321655 Clostridium sporogenes 2.30.9.2.6.019 OTU 1 seq prokMSA_id:090396 AY321658 Clostridium sp. MD4 2.30.9.2.6.999 poor quality 28 seqs prokMSA_id:096743 AB114235 Clostridium sp. B905-1 prokMSA_id:097778 AB114236 Clostridium sp. B904-4 prokMSA_id:034294 AF191231 Clostridium sp. 21 prokMSA_id:041111 AF191237 Clostridium sp. 31 prokMSA_id:028292 AF284560 Hydrogen production community clone HPB-G1-8 prokMSA_id:041266 AF396966 Clostridium botulinum strain ATCC17854 prokMSA_id:066591 AF400092 clone P1a4-25 prokMSA_id:055973 AJ287710 low G+C Gram-positive 430ev prokMSA_id:031988 AJ287730 low G+C Gram-positive 398ev prokMSA_id:078027 AJ459910 Clostridiaceae clone BED 2 DGGE ME6 prokMSA_id:026414 AY029589 Clostridium sp. clone HPG-S-31 prokMSA_id:038533 AY029591 Clostridium sp. clone HPG-S-13 prokMSA_id:044977 AY029592 Clostridium sp. clone HPG-S-15 prokMSA_id:029674 AY029593 Clostridium sp. clone HPG-S-3 prokMSA_id:086128 AY092228 clone BI144 prokMSA_id:083337 AY092340 clone BM133 prokMSA_id:085553 AY092341 clone BM85 prokMSA_id:063026 AY122598 clone MW2-28 prokMSA_id:081916 AY193932 clone SB89 prokMSA_id:082936 AY256586 DGGE band A2-13 prokMSA_id:090490 AY311649 clone YRCC13 prokMSA_id:016155 L34419 Clostridium ljungdahlii str. ERI-2. prokMSA_id:016146 L37588 Clostridium botulinum str. BP2 VPI 14844. prokMSA_id:016151 M59092 Clostridium kluyveri. prokMSA_id:016152 M59097 Clostridium ljungdahlii str. PETC ATCC 49587 . prokMSA_id:016135 M59100 Clostridium novyi str. 151 L.S. McClung ATCC 17861 . prokMSA_id:016137 M59101 Clostridium oceanicum ATCC 25647 . prokMSA_id:016136 M59115 Clostridium sporogenes str. 388 ATCC 3584 . 2.30.9.2.7 C.SCATOLOGENES 5 seqs 2.30.9.2.7.001 OTU 1 seq prokMSA_id:024483 AJ387879 anoxSCC-18 2.30.9.2.7.002 OTU 1 seq prokMSA_id:045660 AJ387882 anoxSCC-27 2.30.9.2.7.003 OTU 1 seq prokMSA_id:077703 AY170379 Clostridium carboxidivorans 2.30.9.2.7.999 poor quality 2 seqs prokMSA_id:078160 AJ459908 Clostridiaceae clone BED 3 DGGE ME15 prokMSA_id:016156 M59104 Clostridium scatologenes ATCC 25775 . 2.30.9.2.8 C.COCHLEARIUM_SUBGROUP 49 seqs 2.30.9.2.8.001 OTU 2 seqs prokMSA_id:064232 AJ427628 Clostridium scatologenes strain FP prokMSA_id:020034 Y18813 Clostridium scatologenes 2.30.9.2.8.002 OTU 2 seqs prokMSA_id:021985 AJ408959 clone HuCA3 prokMSA_id:044983 AJ408962 clone HuCA6 2.30.9.2.8.004 OTU 3 seqs prokMSA_id:027711 AB034023 rumen 4C0d-10 prokMSA_id:016158 AF001732 clone RC30. prokMSA_id:085102 AY244960 rumen clone BS6 2.30.9.2.8.005 OTU 1 seq prokMSA_id:029102 AJ387884 anoxSCC-33 2.30.9.2.8.006 OTU 1 seq prokMSA_id:029799 AJ387886 anoxSCC-44 2.30.9.2.8.007 OTU 1 seq prokMSA_id:030766 AJ229202 from anoxic bulk soil clone BSV50 2.30.9.2.8.008 OTU 1 seq prokMSA_id:033242 AF371831 clone p-4524-4Wb3 2.30.9.2.8.009 OTU 2 seqs prokMSA_id:034479 AF281142 Clostridium sp. T7 prokMSA_id:044328 AJ250960 Clostridium sp. strain ccug 42741 2.30.9.2.8.010 OTU 1 seq prokMSA_id:036004 AJ229185 from anoxic bulk soil clone BSV20 2.30.9.2.8.011 OTU 1 seq prokMSA_id:039250 AJ408227 equine intestinal sp. PL20 clone PL20 2.30.9.2.8.012 OTU 1 seq prokMSA_id:057455 AJ441230 firmicute clone P. palm C/A 51 2.30.9.2.8.013 OTU 1 seq prokMSA_id:049113 AY050603 clone GOUTA13 2.30.9.2.8.014 OTU 1 seq prokMSA_id:052493 AJ387880 anoxSCC-22 2.30.9.2.8.015 OTU 1 seq prokMSA_id:060609 AF407688 clone R16 2.30.9.2.8.016 OTU 1 seq prokMSA_id:064426 AY102896 clone BCM3P-27B 2.30.9.2.8.017 OTU 2 seqs prokMSA_id:016157 S46737 Clostridium tetanomorphum str. H1 NCIMB 11547. prokMSA_id:016159 X68184 Clostridium tetanomorphum str. H1 NCIMB 11547. 2.30.9.2.8.018 OTU 1 seq prokMSA_id:016160 X66001 Clostridium tetanomorphum DSM 528. 2.30.9.2.8.020 OTU 4 seqs prokMSA_id:026148 AF156796 Clostridium peptidovorans prokMSA_id:081315 AY217421 MTCE-T2 2B prokMSA_id:016161 X76741 Clostridium sp. prokMSA_id:016162 X96736 Clostridium pascui str. cm19 DSM 10365 . 2.30.9.2.8.021 OTU 1 seq prokMSA_id:016163 Y15985 Clostridium sp. str. RPec1. 2.30.9.2.8.022 OTU 1 seq prokMSA_id:016164 X79862 Clostridium acetireducens str. 30A DSM 7310 . 2.30.9.2.8.023 OTU 4 seqs prokMSA_id:079176 AE015936 Clostridium tetani E88 section 1 of 10 of the complete genome prokMSA_id:079236 AE015937 Clostridium tetani E88 section 2 of 10 of the complete genome prokMSA_id:079542 AE015945 Clostridium tetani E88 section 10 of 10 of the complete genome prokMSA_id:016166 X74770 Clostridium tetani NCTC 279 . 2.30.9.2.8.024 OTU 1 seq prokMSA_id:071293 AF191240 Clostridium sp. 38 2.30.9.2.8.025 OTU 1 seq prokMSA_id:071518 AB081585 Clostridiaceae str. A4d 2.30.9.2.8.026 OTU 1 seq prokMSA_id:081074 AY217398 PTCE-T2A 5A 2.30.9.2.8.999 poor quality 13 seqs prokMSA_id:016168 AF005152 Clostridium SPF str. SPF. prokMSA_id:051484 AF016518 HRS-5 prokMSA_id:035153 AF016524 HRS-22 prokMSA_id:032670 AF018004 T2703c prokMSA_id:024473 AF181913 clone 5d/9 prokMSA_id:073063 AF191234 Clostridium sp. 26 prokMSA_id:033337 AF191246 Clostridium sp. 49 prokMSA_id:068211 AF365512 clone BM89MF5BD8 prokMSA_id:024893 AF369710 clone 41 prokMSA_id:072275 AJ518357 clone Neu2P3-93 prokMSA_id:098412 AY160824 clone COB P5-1 prokMSA_id:016167 M59093 Clostridium cochlearium ATCC 17787 . prokMSA_id:016165 M59099 Clostridium malenominatum ATCC 25776 . 2.30.9.2.9 C.SUBTERMINALE_SUBGROUP 75 seqs 2.30.9.2.9.001 OTU 1 seq prokMSA_id:019491 AJ431340 firmicute isolate ikaite un-c1 2.30.9.2.9.002 OTU 6 seqs prokMSA_id:060741 AJ506115 Clostridium estertheticum subsp. laramiense strain DSM 14864 prokMSA_id:060740 AJ506116 Clostridium frigoris strain DSM 14204 clone 5 prokMSA_id:060739 AJ506117 Clostridium frigoris strain DSM 14204 clone 10 prokMSA_id:056393 AJ506118 Clostridium lacusfryxellense strain DSM 14205 prokMSA_id:016174 S46734 Clostridium estertheticum NCIMB 12511 . prokMSA_id:016175 X68181 Clostridium estertheticum NCIMB 12511 . 2.30.9.2.9.003 OTU 11 seqs prokMSA_id:016171 AF191249 str. 6. prokMSA_id:016172 AF191250 str. 25. prokMSA_id:016173 AF191251 str. 45. prokMSA_id:030228 AF241844 Clostridium subterminale isolate DSM 6970 prokMSA_id:031985 AF317650 Clostridium thiosulforeducens prokMSA_id:055812 AF502398 Clostridium sp. V13 prokMSA_id:020268 AJ295661 Clostridium sp. Irt-JG1-73 prokMSA_id:043755 AJ295662 Clostridium sp. Irt-JG1-54 prokMSA_id:038588 AY024332 Clostridium thiosulforeducens prokMSA_id:067855 AY082450 Clostridium sp. 265b prokMSA_id:016169 L37595 Clostridium subterminale ATCC 25774 . 2.30.9.2.9.004 OTU 1 seq prokMSA_id:027541 AJ387878 anoxSCC-7 2.30.9.2.9.005 OTU 1 seq prokMSA_id:029618 AJ297443 Clostridium aff. estertheticum A-1/C-an/I 2.30.9.2.9.006 OTU 8 seqs prokMSA_id:031319 AF241842 Clostridium subterminale isolate DSM 2636 prokMSA_id:039409 AF241843 Clostridium subterminale isolate DSM 758 prokMSA_id:093376 AJ507732 Clostridium proteolyticus strain AP-15 prokMSA_id:090117 AJ577723 Clostridium sp. prokMSA_id:016178 X68316 Clostridium argentinense ATCC 27322 . prokMSA_id:016179 X68317 Clostridium argentinense str. 113/30 toxin G. prokMSA_id:016182 X68451 Clostridium subterminale NCIMB 10746. prokMSA_id:016183 X78074 Clostridium sp. DSM 1975. 2.30.9.2.9.007 OTU 1 seq prokMSA_id:039657 AF427149 Clostridium sp. PAR1 2.30.9.2.9.008 OTU 2 seqs prokMSA_id:041701 AJ309522 Red Sea KT-2K1 prokMSA_id:079436 AY187622 Clostridium tunisiense 2.30.9.2.9.009 OTU 1 seq prokMSA_id:042612 AJ295663 Clostridium sp. Irt-JG1-9 2.30.9.2.9.011 OTU 1 seq prokMSA_id:046741 AF332717 clone UASB_brew_B68 2.30.9.2.9.013 OTU 4 seqs prokMSA_id:043478 AF145816 Metal-contaminated soil clone K20-13 prokMSA_id:050541 AJ297442 Clostridium aff. estertheticum A-1/C-an/C1 prokMSA_id:060737 AJ506119 Clostridium bowmanii strain DSM 14206 clone 11 prokMSA_id:060735 AJ506120 Clostridium bowmanii strain DSM 14206 clone 16 2.30.9.2.9.014 OTU 1 seq prokMSA_id:060611 AF407686 clone R10 2.30.9.2.9.015 OTU 2 seqs prokMSA_id:016177 AF142915 Clostridium PENDANT-1. prokMSA_id:016176 AF142928 Clostridium PENDANT-16. 2.30.9.2.9.016 OTU 1 seq prokMSA_id:016180 U62838 clone RB15. 2.30.9.2.9.017 OTU 1 seq prokMSA_id:016181 M59087 Clostridium argentinense ATCC 27322 . 2.30.9.2.9.018 OTU 1 seq prokMSA_id:075821 AY167950 Swine manure RT-8B 2.30.9.2.9.019 OTU 1 seq prokMSA_id:078001 AB089027 Clostridiaceae clone:Rs-B73 2.30.9.2.9.020 OTU 1 seq prokMSA_id:078350 AB088991 clone:Rs-Q18 2.30.9.2.9.021 OTU 1 seq prokMSA_id:081138 AY217406 PTCE-T2A 7H 2.30.9.2.9.022 OTU 1 seq prokMSA_id:082054 AY217385 LTCE-T2A 10B 2.30.9.2.9.023 OTU 1 seq prokMSA_id:083829 AY242742 soil clone Tc132-55 2.30.9.2.9.024 OTU 1 seq prokMSA_id:086642 AY207058 Clostridiales oral clone P4GC_38 P4 2.30.9.2.9.025 OTU 1 seq prokMSA_id:089300 AY289487 soil clone ABS-6 2.30.9.2.9.026 OTU 1 seq prokMSA_id:095342 AJ536844 clone 56 2.30.9.2.9.999 poor quality 24 seqs prokMSA_id:041010 AF191227 Clostridium sp. 8 prokMSA_id:021733 AF191228 Clostridium sp. 15 prokMSA_id:049245 AF191242 Clostridium sp. 44 prokMSA_id:038843 AF427942 clone 8A prokMSA_id:019477 AF427944 clone 5F prokMSA_id:032434 AJ287732 low G+C Gram-positive 400ev prokMSA_id:034700 AJ287733 low G+C Gram-positive 340ev prokMSA_id:028758 AJ287734 low G+C Gram-positive 236ev prokMSA_id:042043 AJ287735 low G+C Gram-positive 178ev prokMSA_id:022686 AJ287736 low G+C Gram-positive 129ev prokMSA_id:027270 AJ287737 low G+C Gram-positive 119ev prokMSA_id:040477 AJ287738 low G+C Gram-positive 28ev prokMSA_id:056863 AJ518740 clone Sai4P3-66 prokMSA_id:061258 AY044042 clone S61P.28SM prokMSA_id:082575 AY092334 clone BF75 prokMSA_id:082235 AY217397 PTCE-T2A 2A prokMSA_id:081415 AY217407 BTCE-T2 2B prokMSA_id:082386 AY217422 MTCE-T2 3C prokMSA_id:016184 M59106 Clostridium subterminale ATCC 25774 . prokMSA_id:016170 U62852 clone RB34. prokMSA_id:021473 U65711 Mastodon intestinal AN-14-2 prokMSA_id:040249 U65712 Mastodon intestinal AN-12-6 prokMSA_id:040004 U65713 Mastodon intestinal AN-12-13 prokMSA_id:020212 U65714 Mastodon intestinal AN-14-1 2.30.9.2.10 C.ACETOBUTYLICUM_SUBGROUP 19 seqs 2.30.9.2.10.001 OTU 7 seqs prokMSA_id:018375 AF270501 Clostridium felsineum NCIMB 10690 prokMSA_id:020598 AF270502 Clostridium felsineum DSM 794 prokMSA_id:047394 NC_003030 Clostridium acetobutylicum ATCC824 complete genome prokMSA_id:016189 U16166 Clostridium acetobutylicum ATCC 824 . prokMSA_id:016191 X78071 Clostridium acetobutylicum DSM 1731. prokMSA_id:016484 Y18170 Clostridium roseum strain DSM 7320 prokMSA_id:046897 Y18172 Clostridium roseum strain DSM 6424 2.30.9.2.10.002 OTU 1 seq prokMSA_id:067825 AY082483 Clostridium sp. 44a-T5zd 2.30.9.2.10.003 OTU 1 seq prokMSA_id:016185 X73439 Clostridium collagenovorans DSM 3089 . 2.30.9.2.10.004 OTU 1 seq prokMSA_id:016186 X73446 Clostridium sardiniensis ATCC 33455 . 2.30.9.2.10.005 OTU 2 seqs prokMSA_id:016187 X78070 Clostridium acetobutylicum ATCC 824 . prokMSA_id:072289 X78070 C.acetobutylicum ATCC 824 T 2.30.9.2.10.006 OTU 1 seq prokMSA_id:016190 X78072 Clostridium acetobutylicum NCDO 1712. 2.30.9.2.10.007 OTU 1 seq prokMSA_id:070408 AJ289214 RSb33 2.30.9.2.10.999 poor quality 5 seqs prokMSA_id:034241 AF284559 Hydrogen production community clone HPB-G1-6 prokMSA_id:092314 AY341238 Clostridium baratii clone C3 prokMSA_id:092738 AY341239 Clostridium baratii clone C9 prokMSA_id:092669 AY341240 Clostridium baratii clone D7 prokMSA_id:016188 U17030 Clostridium acetobutylicum DSM 792 . 2.30.9.2.11 C.BARATI_SUBGROUP 367 seqs 2.30.9.2.11.1 C.CADAVERIS_SUBGROUP 10 seqs 2.30.9.2.11.1.001 OTU 7 seqs prokMSA_id:034378 AJ308387 clone S25-6 prokMSA_id:022435 AJ400258 clone S24-9 prokMSA_id:016192 D86305 unnamed organism. prokMSA_id:070665 E11861 of a segment prokMSA_id:072493 E11886 of novel Segmented filamentous BAL01 prokMSA_id:016193 X77814 unnamed organism. prokMSA_id:016194 X87244 unnamed organism. 2.30.9.2.11.1.002 OTU 1 seq prokMSA_id:022668 AY007720 Arthromitus sp. SFB-trout ribosmal 2.30.9.2.11.1.003 OTU 1 seq prokMSA_id:016195 X80834 unnamed organism. 2.30.9.2.11.1.999 poor quality 1 seq prokMSA_id:016196 M59086 Clostridium cadaveris ATCC 25783 . 2.30.9.2.11.2 C.ALGIDICARNIS_SUBGROUP 19 seqs 2.30.9.2.11.2.001 OTU 2 seqs prokMSA_id:016199 AJ222546 Anaerobacter polyendosporus. prokMSA_id:042703 Y18189 Anaerobacter polyendosporus strain DSM 5272 2.30.9.2.11.2.002 OTU 7 seqs prokMSA_id:098228 AB114237 Clostridium sp. UsIt102-1 prokMSA_id:095809 AB114238 Clostridium sp. Kas203-1 prokMSA_id:098199 AB114240 Clostridium sp. Kas401-3 prokMSA_id:095664 AB114241 Clostridium sp. Kas107-1 prokMSA_id:096963 AB114243 Clostridium sp. Kas404-1 prokMSA_id:097024 AB114244 Clostridium sp. Kas303 prokMSA_id:016198 X76740 Clostridium intestinalis DSM 6191 . 2.30.9.2.11.2.003 OTU 2 seqs prokMSA_id:075568 AJ318906 Clostridium putrefaciens strain MH47 prokMSA_id:016200 X77676 Clostridium algidicarnis NCFB 2931 . 2.30.9.2.11.2.004 OTU 1 seq prokMSA_id:081682 AY208919 Clostridium fallax isolate VA24831_02 2.30.9.2.11.2.005 OTU 1 seq prokMSA_id:097334 AB114245 Clostridium sp. B910-1 2.30.9.2.11.2.999 poor quality 6 seqs prokMSA_id:017303 AJ287728 low G+C Gram-positive 228ev prokMSA_id:046954 AJ292922 WR8117 clone WR8117 prokMSA_id:050866 AJ292923 WR8172 clone WR8172 prokMSA_id:030850 AJ295668 IrT-JG1-52 prokMSA_id:085379 AY092331 clone BM40 prokMSA_id:016197 M59088 Clostridium fallax ATCC 19400 . 2.30.9.2.11.3 C.PERFRINGENS_SUBGROUP 52 seqs 2.30.9.2.11.3.001 OTU 29 seqs prokMSA_id:052947 AB045282 Clostridium perfringens operon 23S 5S genes complete sequences prokMSA_id:054675 AB045283 Clostridium perfringens rrnB operon 23S 5S genes complete sequences prokMSA_id:054412 AB045284 Clostridium perfringens rrnC operon 23S 5S genes complete sequences prokMSA_id:054029 AB045285 Clostridium perfringens rrnD operon 23S 5S genes complete sequences prokMSA_id:053902 AB045286 Clostridium perfringens rrnE operon 23S 5S genes complete sequences prokMSA_id:054809 AB045287 Clostridium perfringens rrnF operon 23S 5S genes complete sequences prokMSA_id:054834 AB045288 Clostridium perfringens rrnG operon 23S 5S genes complete sequences prokMSA_id:068917 AB045289 Clostridium perfringens rrnH operon tRNA-Ile 23S 5S genes complete sequences prokMSA_id:068918 AB045290 Clostridium perfringens rrnI operon tRNA-Ile 23S 5S genes complete sequences prokMSA_id:068919 AB045291 Clostridium perfringens rrnJ operon tRNA-Ile 23S 5S genes complete sequences prokMSA_id:073346 AB075767 Clostridium perfringens prokMSA_id:070420 AF018036 OI1612 prokMSA_id:071108 AF018040 O8SB prokMSA_id:046591 AF018041 O8SC prokMSA_id:022333 AF018042 O8SG prokMSA_id:025899 AF018043 O8SH prokMSA_id:047440 AF316589 Clostridium perfringens prokMSA_id:026601 AF317362 feedlot manure B101 prokMSA_id:026184 AF371845 clone p-4636-2Wa2 prokMSA_id:018408 AF390549 Clostridium sp. AB&J prokMSA_id:061038 AF530360 clone cadhufec18g01sav prokMSA_id:063983 AP003193 Clostridium perfringens str. 13 complete genome section 9/10 prokMSA_id:063982 AP003194 Clostridium perfringens str. 13 complete genome section 10/10 prokMSA_id:071655 AY098488 Clostridium sp. AK51 prokMSA_id:075452 AY167965 Swine manure 37-3 prokMSA_id:077120 AY167966 Swine manure 37-4 prokMSA_id:016206 M69264 Clostridium perfringens str. CPN50 =rrnB operon H3 fragment. prokMSA_id:046789 NC_003366 Clostridium perfringens complete genome prokMSA_id:016210 Y12669 Clostridium perfringens str. antibioticNitrofurantoin-resistant. 2.30.9.2.11.3.002 OTU 1 seq prokMSA_id:063285 AF523934 clone RCP1-100 2.30.9.2.11.3.003 OTU 4 seqs prokMSA_id:016202 AF110272 Sarcina ventriculi. prokMSA_id:073781 AF371846 clone p-37-a5 prokMSA_id:016201 X76649 Sarcina ventriculi DSM 286. prokMSA_id:016204 X76650 Sarcina maxima str. K66 DSM 316 . 2.30.9.2.11.3.004 OTU 1 seq prokMSA_id:016203 D14151 Sarcina ventriculi str. VPI-s-7-31 GIFU 7886. 2.30.9.2.11.3.005 OTU 1 seq prokMSA_id:016207 AF172882 clone D1-11. 2.30.9.2.11.3.999 poor quality 16 seqs prokMSA_id:062092 AB064870 Clostridium sp. clone:NB2D5 prokMSA_id:037305 AF016516 HRS-3 prokMSA_id:019985 AF016517 HRS-4 prokMSA_id:068948 AF018012 T27118c prokMSA_id:070230 AF018044 1A prokMSA_id:068076 AF365668 clone BM89DS6BbE6 prokMSA_id:068070 AF365676 clone BM89DS6BE6 prokMSA_id:073320 AF481818 clone N13F prokMSA_id:084535 AF499883 clone ABLC10 prokMSA_id:066343 AF508196 clone CN MLS Band1_2 prokMSA_id:018196 AJ287722 low G+C Gram-positive 261ev prokMSA_id:039935 AJ287725 low G+C Gram-positive 17ev prokMSA_id:016205 L34624 tarantellus ATCC 29255 . prokMSA_id:016211 M59103 Clostridium perfringens ATCC 13124 . prokMSA_id:016208 Z77442 str. 1-700 C14. prokMSA_id:016209 Z77461 str. 1-700 C39. 2.30.9.2.11.4 C.AURANTIBUTYRICUM_SUBGROUP 120 seqs 2.30.9.2.11.4.003 OTU 9 seqs prokMSA_id:070568 AF371836 clone p-201-o5 prokMSA_id:041092 AF371837 clone p-2117-s959-2 prokMSA_id:020869 AF371838 clone p-4786-2Wb2 prokMSA_id:036872 AF371839 clone p-4581-4Wb3 prokMSA_id:035112 AF371932 clone p-4936-6Wb2 prokMSA_id:067290 AF495400 clone F10.4 prokMSA_id:073073 AJ408995 clone HuCB15 prokMSA_id:097519 AY239422 clone rc1-30 complete prokMSA_id:037589 Y18176 Clostridium disporicum strain DSM 5521 2.30.9.2.11.4.005 OTU 7 seqs prokMSA_id:016781 AF150696 Elbe River snow isolate Iso15_4 prokMSA_id:033186 AF227826 Clostridium sp. 75064 prokMSA_id:070881 AF357574 mpn-isolate group 26 prokMSA_id:037214 AJ132605 Clostridium tertium prokMSA_id:016236 AJ245413 Clostridium tertium ATCC 14573. prokMSA_id:038488 Y18174 Clostridium tertium strain DSM 2485 prokMSA_id:025889 Y18175 Clostridium sartagoformum strain DSM 129 2.30.9.2.11.4.006 OTU 2 seqs prokMSA_id:029859 AJ289208 RSb3 prokMSA_id:027099 AJ289210 RSb8 2.30.9.2.11.4.007 OTU 2 seqs prokMSA_id:030877 AJ229211 from anoxic bulk soil clone BSV62 prokMSA_id:074580 AJ229226 from anoxic bulk soil clone BSV82 2.30.9.2.11.4.010 OTU 1 seq prokMSA_id:034679 AF371841 clone p-2171-s959-3 2.30.9.2.11.4.011 OTU 2 seqs prokMSA_id:037349 AJ289201 RSa17 prokMSA_id:016214 X76745 Clostridium quinii DSM 6736 . 2.30.9.2.11.4.013 OTU 14 seqs prokMSA_id:074851 AB018183 budayi prokMSA_id:040062 AB018184 multiforme prokMSA_id:031869 AB018185 nitritogenes prokMSA_id:054713 AF371840 clone p-234-o5 prokMSA_id:019880 AJ408230 equine intestinal sp. PL23 clone PL23 prokMSA_id:092868 AY341241 Clostridium baratii clone C7 prokMSA_id:093007 AY341242 Clostridium baratii clone I11 prokMSA_id:092509 AY341243 Clostridium baratii clone D12 prokMSA_id:016217 NONE nitritogenes DSM 3985 . prokMSA_id:016229 NONE budayi ATCC 25541 . prokMSA_id:016233 NONE multiforme DSM 20694 . prokMSA_id:016213 X68174 Clostridium barati str. 2227 ATCC 27638 . prokMSA_id:016232 X68175 Clostridium barati ATCC 43756. prokMSA_id:016234 X77842 Clostridium absonum DSM 599 . 2.30.9.2.11.4.014 OTU 1 seq prokMSA_id:041948 AF371842 clone p-2106-s959-2 2.30.9.2.11.4.015 OTU 1 seq prokMSA_id:047464 AF371843 clone p-2194-s959-3 2.30.9.2.11.4.016 OTU 3 seqs prokMSA_id:016235 U51843 Clostridium chauvoei ATCC 10092 . prokMSA_id:070497 U59278 Clostridium septicum prokMSA_id:016218 U59278 Clostridium septicum ATCC 12464 . 2.30.9.2.11.4.017 OTU 1 seq prokMSA_id:062673 AF507889 low G+C Gram-positive clone ML635J-34 2.30.9.2.11.4.018 OTU 2 seqs prokMSA_id:063829 AF454299 Bacillus sp. clone ML1228J-10 prokMSA_id:062683 AF507878 low G+C Gram-positive clone ML623J-27 2.30.9.2.11.4.019 OTU 1 seq prokMSA_id:016212 X68183 Clostridium aurantibutyricum str. 2038 NCIMB 10659 . 2.30.9.2.11.4.020 OTU 3 seqs prokMSA_id:016228 AB032556 Clostridium paraputrificum str. M-21. prokMSA_id:016225 X73445 Clostridium paraputrificum ATCC 25780 . prokMSA_id:016215 X75907 Clostridium paraputrificum ATCC 25780 . 2.30.9.2.11.4.021 OTU 2 seqs prokMSA_id:016223 X71850 Clostridium chartatabidum DSM 5482 . prokMSA_id:016216 X76164 Clostridium longisporum DSM 8431. 2.30.9.2.11.4.022 OTU 1 seq prokMSA_id:016219 X98395 Clostridium sp. str. WV6. 2.30.9.2.11.4.023 OTU 1 seq prokMSA_id:016220 AF069742 Clostridium frigidicarnis str. SPL77A. 2.30.9.2.11.4.024 OTU 1 seq prokMSA_id:016221 S46736 Clostridium aurantibutyricum str. 2038 NCIMB 10659 . 2.30.9.2.11.4.025 OTU 2 seqs prokMSA_id:016224 X71849 Clostridium cellulovorans DSM 3052 . prokMSA_id:016231 X73438 Clostridium cellulovorans DSM 3052 . 2.30.9.2.11.4.026 OTU 1 seq prokMSA_id:016227 X97432 Clostridium vincentii. 2.30.9.2.11.4.027 OTU 1 seq prokMSA_id:016230 X77844 Clostridium celatum DSM 1785 . 2.30.9.2.11.4.028 OTU 2 seqs prokMSA_id:016239 AF092548 Clostridium gasigenes DSM 12272. prokMSA_id:016240 AF143692 Clostridium gasigenes str. R26. 2.30.9.2.11.4.029 OTU 1 seq prokMSA_id:075933 AY147273 clone THM-3 2.30.9.2.11.4.030 OTU 1 seq prokMSA_id:076200 AJ420008 Clostridium colicanis strain 13634 2.30.9.2.11.4.031 OTU 1 seq prokMSA_id:091168 AY337519 Clostridium sp. L15 complete 2.30.9.2.11.4.032 OTU 1 seq prokMSA_id:098597 AY160842 clone COB P3-15 2.30.9.2.11.4.999 poor quality 56 seqs prokMSA_id:041399 AB011307 clone: MUG15 prokMSA_id:022754 AB059477 Clostridium sp. C40-2 prokMSA_id:030546 AB059480 Clostridium sp. U40A-5 prokMSA_id:062097 AB064868 UnculturedClostridium sp. clone:NB2D1 prokMSA_id:048196 AF158719 A41 small subunit prokMSA_id:069783 AF253335 human infant D13L prokMSA_id:072072 AF253353 human infant N1A prokMSA_id:072844 AF253381 human infant L13J prokMSA_id:073135 AF253386 human infant L1C prokMSA_id:036729 AF261801 manure pit P312 prokMSA_id:025342 AF261816 manure pit P68 prokMSA_id:025640 AF261820 manure pit P624 prokMSA_id:045884 AF376333 ckncm100-B412.1H1 prokMSA_id:033566 AF400096 Da3-38 prokMSA_id:026866 AF445210 Swine fecal FPC22B prokMSA_id:031605 AF445211 Swine fecal FPC22A prokMSA_id:031071 AF445212 Swine fecal FPC74 prokMSA_id:037015 AF445213 Swine fecal FPC46 prokMSA_id:029128 AF445214 Swine fecal FPC49 prokMSA_id:022372 AF445215 Swine fecal FPC58 prokMSA_id:032824 AF445216 Swine fecal FPC57 prokMSA_id:024881 AF445217 Swine fecal FPC20 prokMSA_id:030726 AF445218 Swine fecal FPC19 prokMSA_id:051324 AF445219 Swine fecal FPC23A prokMSA_id:040346 AF445220 Swine fecal FPC48 prokMSA_id:024724 AF445221 Swine fecal FPC53 prokMSA_id:030133 AF445270 Swine manure pit PPC96B prokMSA_id:020171 AF445271 Swine manure pit PPC106 prokMSA_id:038063 AF445272 Swine manure pit PPC7 prokMSA_id:040031 AF445273 Swine manure pit PPC3 prokMSA_id:039268 AF445274 Swine manure pit PPC5 prokMSA_id:047234 AF445275 Swine manure pit PPC40 prokMSA_id:038847 AF445291 Swine manure pit PPC102 prokMSA_id:052322 AF445292 Swine manure pit PPC84 prokMSA_id:037890 AF445293 Swine manure pit PPC35B prokMSA_id:069536 AF544910 Gram-positive clone A191-21 prokMSA_id:016226 AJ243511 Clostridium sp. prokMSA_id:041051 AJ287724 low G+C Gram-positive 208ev prokMSA_id:035992 AJ289222 RSD6 prokMSA_id:071664 AJ504504 isolate P1CN37 prokMSA_id:062562 AJ504555 isolate P2CN04 prokMSA_id:055784 AJ504556 isolate P2CN05 prokMSA_id:062564 AJ504557 isolate P2CN06 prokMSA_id:062522 AJ504610 isolate P2CN73 prokMSA_id:085355 AY092328 clone BI10 prokMSA_id:083274 AY092329 clone BI96 prokMSA_id:085489 AY092332 clone BI12 prokMSA_id:066865 AY096147 clone F1-26 prokMSA_id:081322 AY217433 MTCE-T2 3A prokMSA_id:095969 AY239393 clone rc5-10 complete prokMSA_id:090726 AY245473 low G+C Gram-positive ML21_DSV7 prokMSA_id:090338 AY304022 soil clone Dpcom61 prokMSA_id:092652 AY343974 Clostridium paraputrificum G12 prokMSA_id:016222 L34622 moniliforme ATCC 25546 . prokMSA_id:016238 M59091 Clostridium carnis ATCC 25777 . prokMSA_id:016237 M59102 Clostridium barati VPI 1586. 2.30.9.2.11.5 C.BUTYRICUM_SUBGROUP 166 seqs 2.30.9.2.11.5.003 OTU 1 seq prokMSA_id:020099 AJ408115 equine intestinal sp. DL28 clone DL28 2.30.9.2.11.5.004 OTU 3 seqs prokMSA_id:049421 AJ229186 from anoxic bulk soil clone BSV21 prokMSA_id:023517 AJ229197 from anoxic bulk soil clone BSV41 prokMSA_id:020553 AJ229218 from anoxic bulk soil clone BSV74 2.30.9.2.11.5.005 OTU 1 seq prokMSA_id:056713 AY100566 clone cvf70173 2.30.9.2.11.5.009 OTU 1 seq prokMSA_id:024896 AF429377 CCAJG161 2.30.9.2.11.5.010 OTU 2 seqs prokMSA_id:025269 AF395433 Eub No. 27 prokMSA_id:060755 AY128089 Clostridium sp. clone PSB-M-2 2.30.9.2.11.5.011 OTU 1 seq prokMSA_id:027375 AJ276992 Clostridium uliginosum strain CK55 2.30.9.2.11.5.012 OTU 2 seqs prokMSA_id:027748 AF418957 clone HTE5 prokMSA_id:083257 AY242737 soil clone TcA10 2.30.9.2.11.5.013 OTU 1 seq prokMSA_id:031167 AJ408110 equine intestinal sp. DL23 clone DL23 2.30.9.2.11.5.014 OTU 13 seqs prokMSA_id:041634 AF127023 Clostridium algidicarnis prokMSA_id:032184 AF127024 Clostridium putrefaciens prokMSA_id:085319 AY244977 rumen clone BS26 prokMSA_id:085888 AY244978 rumen clone BS27 prokMSA_id:086395 AY244980 rumen clone BS29 prokMSA_id:082928 AY244981 rumen clone BS30 prokMSA_id:082860 AY244982 rumen clone BS31 prokMSA_id:085204 AY244984 rumen clone BS33 prokMSA_id:082617 AY244986 rumen clone BS35 prokMSA_id:083292 AY244988 rumen clone BS37 prokMSA_id:086108 AY244989 rumen clone BS38 prokMSA_id:085792 AY244991 rumen clone BS40 prokMSA_id:037683 Y18177 Clostridium putrifaciens strain DSM 1291 2.30.9.2.11.5.015 OTU 1 seq prokMSA_id:033176 AF371844 clone p-1965-s959-5 2.30.9.2.11.5.016 OTU 1 seq prokMSA_id:035306 AJ229230 from anoxic bulk soil clone BSV86 2.30.9.2.11.5.017 OTU 1 seq prokMSA_id:035865 AF371835 clone p-406-o3 2.30.9.2.11.5.018 OTU 1 seq prokMSA_id:037089 AJ229224 from anoxic bulk soil clone BSV80 2.30.9.2.11.5.019 OTU 1 seq prokMSA_id:043602 AJ387883 anoxSCC-31 2.30.9.2.11.5.022 OTU 1 seq prokMSA_id:051473 AB062807 clone:BCf10-24 2.30.9.2.11.5.023 OTU 1 seq prokMSA_id:051790 AJ408116 equine intestinal sp. DL29 clone DL29 2.30.9.2.11.5.024 OTU 1 seq prokMSA_id:061047 AF530351 clone cadhufec18c08sav 2.30.9.2.11.5.025 OTU 1 seq prokMSA_id:066492 AY100597 clone cvf58051 2.30.9.2.11.5.026 OTU 1 seq prokMSA_id:066534 AY100546 clone cvf77019 2.30.9.2.11.5.029 OTU 5 seqs prokMSA_id:088762 AY303799 Clostridium botulinum strain AIP 355.02 prokMSA_id:016245 L37592 Clostridium botulinum str. 36208 ATCC 9564. prokMSA_id:016242 X68170 Clostridium botulinum str. Eklund 202F ATCC 23387. prokMSA_id:016246 X68171 Clostridium botulinum str. Iwanai. prokMSA_id:016262 X68173 Clostridium botulinum str. Eklund 17B ATCC 25765. 2.30.9.2.11.5.032 OTU 2 seqs prokMSA_id:016272 AB009198 clone RFN42. prokMSA_id:016273 AB009208 clone RFN54. 2.30.9.2.11.5.033 OTU 1 seq prokMSA_id:073000 AF275949 Clostridium neonatale 2.30.9.2.11.5.034 OTU 1 seq prokMSA_id:075180 AY147280 clone THM-10 2.30.9.2.11.5.035 OTU 1 seq prokMSA_id:084885 AY239560 clone CARB_ER_18 2.30.9.2.11.5.037 OTU 69 seqs prokMSA_id:047159 AB020187 Clostridium beijerinckii strain:JCM 7833 prokMSA_id:032781 AB020188 Clostridium beijerinckii strain:JCM 7839 prokMSA_id:034846 AB020189 Clostridium beijerinckii strain:JCM 7844 prokMSA_id:039254 AB020190 Clostridium beijerinckii strain:JCM 7845 prokMSA_id:049549 AB020191 Clostridium beijerinckii strain:JCM 7847 prokMSA_id:040766 AB022592 Clostridium butyricum prokMSA_id:071927 AB075768 Clostridium butyricum prokMSA_id:066612 AB084626 Clostridiaceae str. KB6 prokMSA_id:095320 AB114248 Clostridium sp. B915-1 prokMSA_id:098285 AB114249 Clostridium sp. Kas402-3 prokMSA_id:098385 AB114250 Clostridium sp. B908-1 prokMSA_id:095300 AB114251 Clostridium sp. B913-1 prokMSA_id:097998 AB114252 Clostridium sp. Kas202-1 prokMSA_id:098508 AB114253 Clostridium sp. UsS101-2 prokMSA_id:097482 AB114254 Clostridium sp. UsS102-1 prokMSA_id:098062 AB114255 Clostridium sp. Usu-S-R3 prokMSA_id:096776 AB114256 Clostridium sp. UsIt101-1 prokMSA_id:097280 AB114257 Clostridium sp. UsIt102-2 prokMSA_id:097451 AB114258 Clostridium sp. Kas201-1 prokMSA_id:098442 AB114260 Clostridium sp. UsIt102-3 prokMSA_id:097516 AB114261 Clostridium sp. UsS101-1 prokMSA_id:098673 AB114262 Clostridium sp. B901-1b prokMSA_id:097939 AB114263 Clostridium sp. Kas106-4 prokMSA_id:098004 AB114264 Clostridium sp. B902-1b prokMSA_id:016256 AF005092 Clostridium SP3 str. SP3. prokMSA_id:029630 AF150714 Elbe River snow isolate Iso9_1 prokMSA_id:036490 AF296650 Clostridium sp. 6D3 small subunit prokMSA_id:052588 AF316590 Clostridium butyricum prokMSA_id:029139 AF317350 feedlot manure A13 prokMSA_id:019737 AF414573 clone P3IU-35 prokMSA_id:016253 AJ002592 Clostridium butyricum str. strain MW8. prokMSA_id:016274 AJ229244 Clostridium VeCb10 str. VeCb10. prokMSA_id:070022 AJ289207 RSa48 prokMSA_id:021998 AJ289209 RSb6 prokMSA_id:042799 AJ289213 RSb24 prokMSA_id:028256 AJ289216 RSb47 prokMSA_id:033631 AJ289704 Clostridium butyricum strain IBUN 22A prokMSA_id:021382 AJ289705 Clostridium butyricum strain IBUN 125C prokMSA_id:019926 AJ289706 Clostridium butyricum strain IBUN 64A prokMSA_id:067025 AJ458417 Clostridium butyricum strain DSM 5430 prokMSA_id:067024 AJ458418 Clostridium butyricum strain DSM 5431 prokMSA_id:067023 AJ458419 Clostridium butyricum strain E5 prokMSA_id:067022 AJ458420 Clostridium butyricum strain VPI3266 prokMSA_id:067021 AJ458421 Clostridium kainantoi strain DSM 523 prokMSA_id:059906 AY133085 low G+C Gram-positive clone ccslm2120 prokMSA_id:075278 AY168741 clone HC-31 prokMSA_id:084677 AY228334 Clostridium chromoreductans prokMSA_id:086229 AY261812 Clostridiaceae clone PD-UASB-29 prokMSA_id:095057 AY368614 clone nc-23 prokMSA_id:016268 S46735 Clostridium beijerinckii NCIMB 8052 . prokMSA_id:016248 U16122 Clostridium saccharoperbutylacetonicum str. N1-4 ATCC 13564. prokMSA_id:016270 U16147 Clostridium acetobutylicum NCP 262. prokMSA_id:016275 U16165 Clostridium beijerinckii NCIMB 8052 . prokMSA_id:016260 U62847 clone RB26. prokMSA_id:016255 X68176 Clostridium butyricum ATCC 43755. prokMSA_id:016261 X68177 Clostridium butyricum str. MMP3 DSM 2478. prokMSA_id:016252 X68178 Clostridium butyricum str. E.VI.3.6.1 NCIMB 8082. prokMSA_id:016259 X68179 Clostridium beijerinckii DSM 791 . prokMSA_id:016250 X68180 Clostridium beijerinckii NCIMB 9362 . prokMSA_id:016263 X68182 Clostridium beijerinckii NCIMB 8052 . prokMSA_id:016271 X71857 Clostridium puniceum DSM 2619 . prokMSA_id:016258 X76742 Clostridium corinoforum DSM 5906. prokMSA_id:016264 X76749 Clostridium favososporum str. BKM B-1360 DSM 5907. prokMSA_id:016251 X77834 Clostridium kainantoi DSM 523. prokMSA_id:016243 X77843 Clostridium caliptrosporum DSM 5905. prokMSA_id:016266 X78073 Clostridium acetobutylicum NCP 262. prokMSA_id:016277 X81021 Clostridium beijerinckii NCIMB 8052 . prokMSA_id:016276 Y15984 Clostridium sp. str. RXyl1. prokMSA_id:027405 Y18171 Clostridium roseum strain DSM 51 2.30.9.2.11.5.038 OTU 1 seq prokMSA_id:097327 AY371266 clone Dpcom127 2.30.9.2.11.5.999 poor quality 51 seqs prokMSA_id:098254 AB114259 Clostridium sp. B906-1 prokMSA_id:022012 AF016519 HRS-6 prokMSA_id:018909 AF016520 HRS-7 prokMSA_id:025216 AF016521 HRS-8 prokMSA_id:026316 AF016522 HRS-10 prokMSA_id:040876 AF016523 HRS-21 prokMSA_id:023996 AF226712 Clostridium sp. EG3 prokMSA_id:072704 AF253338 human infant D26-2I prokMSA_id:072089 AF253339 human infant D26E prokMSA_id:070785 AF253340 human infant D26A prokMSA_id:070908 AF253341 human infant D26K prokMSA_id:071083 AF253350 human infant S4L prokMSA_id:023695 AF261778 swine feces FOTU3 prokMSA_id:025721 AF261812 manure pit P6OTU1 prokMSA_id:039308 AF261813 manure pit P6OTU2 prokMSA_id:045106 AF396954 Clostridium butyricum strain ATCC43755 prokMSA_id:031686 AF396955 Clostridium butyricum strain ATCC43181 prokMSA_id:044458 AF396956 Clostridium butyricum strain CL 86 prokMSA_id:032102 AF396957 Clostridium butyricum strain CL 109 prokMSA_id:024278 AF396958 Clostridium butyricum strain CL 146 prokMSA_id:021965 AF396959 Clostridium butyricum strain LCL 155 prokMSA_id:019631 AF396960 Clostridium butyricum strain LCL 063 prokMSA_id:047087 AF396961 Clostridium butyricum strain KZ 1886 prokMSA_id:034307 AF396962 Clostridium butyricum strain KZ 1890 prokMSA_id:026553 AF396963 Clostridium butyricum strain ATCC19398 prokMSA_id:038583 AF396964 Clostridium butyricum strain CL 145 prokMSA_id:025585 AF396965 Clostridium butyricum strain CL 19 prokMSA_id:055483 AJ287704 low G+C Gram-positive 306ev prokMSA_id:051308 AJ289206 RSa40 prokMSA_id:032133 AJ289218 RSD2 prokMSA_id:023069 AJ289219 RSD3 prokMSA_id:048626 AJ289220 RSD4 prokMSA_id:043259 AJ404524 Clostridium CL1 prokMSA_id:038764 AJ431341 firmicute isolate ikaite un-c3 prokMSA_id:066963 AY038500 clone CD1G3 prokMSA_id:031234 AY072927 Clostridium butyricum strain CL 145/1 prokMSA_id:017235 AY072928 Clostridium butyricum strain CL 190 prokMSA_id:083575 AY092330 clone BI116 prokMSA_id:084217 AY256588 DGGE band S2-4 prokMSA_id:088748 AY289476 soil clone DS-241 prokMSA_id:089549 AY289477 soil clone DS-31 prokMSA_id:088711 AY315269 rumen clone JRCI21 prokMSA_id:016241 M59085 Clostridium butyricum str. Rowett ATCC 19398 . prokMSA_id:016254 U16164 Clostridium acetobutylicum ATCC 39058. prokMSA_id:016265 U16167 Clostridium beijerinckii NRRL B-592. prokMSA_id:016269 U16168 Clostridium beijerinckii NRRL B-593. prokMSA_id:016244 U16169 Clostridium saccharoperbutylacetonicum str. N1-504 ATCC 27022. prokMSA_id:016249 U16170 Clostridium acetobutylicum str. NCP 193. prokMSA_id:016247 U17099 Clostridium acetobutylicum NCIMB 8653. prokMSA_id:016267 X73444 Clostridium puniceum DSM 2619 . prokMSA_id:016257 X91457 AEspoe hard rock 10-626m below ground surface clone A34o.