P-G3-4-E4 : M_NT = 2, M_NS = 2 : A584G (D194G), A1048C (K349Q) P-G3-3-C9 : M_NT = 6, M_NS = 2 : G152A (R50H), A252G (SYNONYMOUS), T462A (SYNONYMOUS), T549C (SYNONYMOUS), A843G (SYNONYMOUS), A1268G (D422G) P-G3-4-A10 : M_NT = 2, M_NS = 1 : T233A (F77Y), A900G (SYNONYMOUS) P-G3-2-A12 : M_NT = 1, M_NS = 0 : A408T (SYNONYMOUS) P-G3-5-H4 : M_NT = 3, M_NS = 3 : A602T (E200V), A604G (N201D), A1048C (K349Q) P-G3-3-A9 : M_NT = 1, M_NS = 0 : A867G (SYNONYMOUS) P-G3-5-D1 : M_NT = 3, M_NS = 2 : T8C (I2T), C201T (SYNONYMOUS), T524C (I174T) P-G3-1-B1 : M_NT = 2, M_NS = 0 : T513G (SYNONYMOUS), A1305G (SYNONYMOUS) P-G3-1-E5 : M_NT = 1, M_NS = 0 : T1224C (SYNONYMOUS) P-G3-2-E7 : M_NT = 6, M_NS = 4 : A65T (N21I), T232C (F77L), T381C (SYNONYMOUS), A857G (H285R), A930C (K309N), A1185G (SYNONYMOUS) P-G6-1-D6 : M_NT = 10, M_NS = 3 : G70A (D23N), A221T (Q73L), A441C (SYNONYMOUS), T453C (SYNONYMOUS), C865A (Q288K), A963G (SYNONYMOUS), T1017C (SYNONYMOUS), T1026G (SYNONYMOUS), A1035G (SYNONYMOUS), A1176G (SYNONYMOUS) P-G6-1-G9 : M_NT = 5, M_NS = 2 : C129A (F42L), T144C (SYNONYMOUS), T219C (SYNONYMOUS), A1107T (SYNONYMOUS), A1387G (S462G) P-G6-1-E6 : M_NT = 2, M_NS = 1 : A717G (SYNONYMOUS), A781C (T260P) P-G6-1-A11 : M_NT = 5, M_NS = 1 : G150A (SYNONYMOUS), A180G (SYNONYMOUS), C189T (SYNONYMOUS), A930T (K309N), G969A (SYNONYMOUS) P-G6-5-G10 : M_NT = 3, M_NS = 3 : A28G (K9E), T533C (M177T), A1099G (I366V) P-G6-1-H8 : M_NT = 6, M_NS = 2 : A28G (K9E), A231G (SYNONYMOUS), T306C (SYNONYMOUS), A551G (D183G), A582T (SYNONYMOUS), A855G (SYNONYMOUS) P-G6-1-F11 : M_NT = 9, M_NS = 3 : A4G (T1A), A96G (SYNONYMOUS), A404G (N134S), T906A (SYNONYMOUS), A984T (SYNONYMOUS), C1290T (SYNONYMOUS), A1320G (SYNONYMOUS), A1356G (SYNONYMOUS), C1366T (L455F) P-G6-5-B6 : M_NT = 7, M_NS = 3 : G152A (R50H), A162T (SYNONYMOUS), T279C (SYNONYMOUS), A307G (I102V), A336T (SYNONYMOUS), T996C (SYNONYMOUS), A1049G (K349R) P-G6-1-C3 : M_NT = 3, M_NS = 1 : T88A (L29M), T322C (SYNONYMOUS), T1209A (SYNONYMOUS) P-G6-1-B5 : M_NT = 5, M_NS = 2 : A48G (SYNONYMOUS), C813T (SYNONYMOUS), T944C (V314A), T987C (SYNONYMOUS), T1404G (H467Q) P-G9-2-C4 : M_NT = 2, M_NS = 2 : A287G (N95S), T1395A (H464Q) P-G9-3-D7 : M_NT = 7, M_NS = 2 : T816C (SYNONYMOUS), A823T (T274S), G1151A (G383D), G1293A (SYNONYMOUS), A1305G (SYNONYMOUS), T1312C (SYNONYMOUS), T1377C (SYNONYMOUS) P-G9-1-B6 : M_NT = 8, M_NS = 5 : C156T (SYNONYMOUS), A367G (I122V), A479G (N159S), A551G (D183G), T903C (SYNONYMOUS), C1110T (SYNONYMOUS), T1376C (I458T), A1400C (H466P) P-G9-4-G1 : M_NT = 4, M_NS = 2 : A870T (E289D), T1209A (SYNONYMOUS), A1350G (SYNONYMOUS), delCAT1408: (FRAMESHIFT) P-G9-5-B10 : M_NT = 7, M_NS = 3 : T105C (SYNONYMOUS), A148G (T49V), C149T (T49V*), C581T (P193L), A723C (SYNONYMOUS), T787C (SYNONYMOUS), C1405G (H468D) P-G9-5-C1 : M_NT = 8, M_NS = 3 : C189T (SYNONYMOUS), G354T (SYNONYMOUS), A422T (E140V), C756T (SYNONYMOUS), T816C (SYNONYMOUS), C889T (R296W), A1383G (SYNONYMOUS), T1407A (H468Q) P-G9-2-G2 : M_NT = 7, M_NS = 3 : A147T (SYNONYMOUS), C581T (P193L), A723C (SYNONYMOUS), T787C (SYNONYMOUS), T1376G (I458S), A1383T (SYNONYMOUS), A1413T (NOSTOP) P-G9-5-H4 : M_NT = 7, M_NS = 4 : A691G (S230G), A876G (SYNONYMOUS), G888A (SYNONYMOUS), A1004T (Y334F), A1144G (N381D), A1383T (SYNONYMOUS), A1394G (H464R) P-G9-3-A9 : M_NT = 10, M_NS = 4 : T97C (F32L), C129T (SYNONYMOUS), A183G (SYNONYMOUS), A222T (Q73H), A587G (D195G), T787C (SYNONYMOUS), T1077A (SYNONYMOUS), T1380C (SYNONYMOUS), A1383T (SYNONYMOUS), A1413T (NOSTOP) P-G12-5-H10 : M_NT = 5, M_NS = 4 : A242G (D80G), A551G (D183G), C1279T (H426Y), A1350G (SYNONYMOUS), A1413T (NOSTOP) P-G12-4-D8 : M_NT = 5, M_NS = 3 : T177C (SYNONYMOUS), A283G (K94E), A441G (SYNONYMOUS), A823T (T274S), A1204G (I401V) P-G12-5-F9 : M_NT = 9, M_NS = 4 : C149T (T49M), T214C (SYNONYMOUS), A783G (SYNONYMOUS), T1115C (V371A), T1152C (SYNONYMOUS), A1260G (SYNONYMOUS), T1376G (I458S), A1383T (SYNONYMOUS), A1413T (NOSTOP) P-G12-2-B6 : M_NT = 7, M_NS = 2 : G152A (R50H), T279C (SYNONYMOUS), T327C (SYNONYMOUS), T996C (SYNONYMOUS), A1049G (K349R), A1242C (SYNONYMOUS), T1278C (SYNONYMOUS) P-G12-5-A12 : M_NT = 5, M_NS = 0 : T684G (SYNONYMOUS), T903C (SYNONYMOUS), T1209C (SYNONYMOUS), A1350G (SYNONYMOUS), T1392A (SYNONYMOUS) P-G12-3-C8 : M_NT = 8, M_NS = 4 : G152A (R50H), A666C (SYNONYMOUS), C746T (P248L), G891A (SYNONYMOUS), A1059G (SYNONYMOUS), C1069T (SYNONYMOUS), T1411C (NOSTOP), A1413T (NOSTOP) P-G12-5-D1 : M_NT = 8, M_NS = 4 : A54T (L17F), C369T (SYNONYMOUS), C372T (SYNONYMOUS), T384A (SYNONYMOUS), A426T (SYNONYMOUS), A686T (E228V), T1299A (D432E), T1376C (I458T) P-G12-4-B5 : M_NT = 13, M_NS = 5 : T45C (SYNONYMOUS), T61C (SYNONYMOUS), T144C (SYNONYMOUS), G152A (R50H), A159G (SYNONYMOUS), A183T (E60D), A285G (SYNONYMOUS), T406C (S135P), G438A (SYNONYMOUS), A878T (E292V), T903C (SYNONYMOUS), A1176G (SYNONYMOUS), A1339G (I446V) P-G12-3-F8 : M_NT = 10, M_NS = 4 : T279C (SYNONYMOUS), T557C (V185A), A628G (I209V), A849G (SYNONYMOUS), T903C (SYNONYMOUS), T942C (SYNONYMOUS), C1110T (SYNONYMOUS), C1125T (SYNONYMOUS), T1299A (D432E), C1405G (H468D) P10 : M_NT = 11, M_NS = 5, U50 = 0.98, T50 = 43.4, EXPRESSION = 124 : T61C (SYNONYMOUS), T144C (SYNONYMOUS), G152A (R50H), A183T (E60D), A285G (SYNONYMOUS), T406C (S135P), G438A (SYNONYMOUS), T669C (SYNONYMOUS), A798G (SYNONYMOUS), A867T (Q288H), A1144G (N381D) P11 : M_NT = 9, M_NS = 5, U50 = 0.92, T50 = 41.0, EXPRESSION = 94 : G152A (R50H), A395C (E131A), T684G (SYNONYMOUS), T903C (SYNONYMOUS), A932G (Q310R), A1032C (SYNONYMOUS), A1107T (SYNONYMOUS), A1400G (H466R), A1409T (H469L) P13 : M_NT = 16, M_NS = 5, U50 = 1.08, T50 = 43.5, EXPRESSION = 134 : A7G (I2V), A147T (SYNONYMOUS), G276C (SYNONYMOUS), A285G (SYNONYMOUS), T406C (S135P), G438A (SYNONYMOUS), A548G (D182G), A666C (SYNONYMOUS), T819C (SYNONYMOUS), A823T (T274S), T858C (SYNONYMOUS), T996C (SYNONYMOUS), A1049G (K349R), A1242C (SYNONYMOUS), T1278C (SYNONYMOUS), A1383T (SYNONYMOUS) P14 : M_NT = 8, M_NS = 1, U50 = 1.00, T50 = 40.1, EXPRESSION = 46 : T351C (SYNONYMOUS), T444C (SYNONYMOUS), T858C (SYNONYMOUS), T996C (SYNONYMOUS), A1049G (K349R), A1242C (SYNONYMOUS), T1278C (SYNONYMOUS), A1383T (SYNONYMOUS) P15 : M_NT = 4, M_NS = 1, U50 = 0.87, T50 = 41.6, EXPRESSION = 96 : T444C (SYNONYMOUS), A651G (SYNONYMOUS), A1191T (SYNONYMOUS), C1405G (H468D) P16 : M_NT = 9, M_NS = 3, U50 = 0.57, T50 = 38.8, EXPRESSION = 68 : T207A (D68E), A242G (D80G), T453A (SYNONYMOUS), A735G (SYNONYMOUS), T750C (SYNONYMOUS), T996C (SYNONYMOUS), A1242C (SYNONYMOUS), T1278C (SYNONYMOUS), T1411C (NOSTOP) P17 : M_NT = 6, M_NS = 3, U50 = 0.78, T50 = 41.0, EXPRESSION = 76 : A282G (SYNONYMOUS), G373A (V124M), A399T (SYNONYMOUS), A604G (N201D), A810G (SYNONYMOUS), A1234G (T411A) P18 : M_NT = 11, M_NS = 2, U50 = 0.87, T50 = 42.0, EXPRESSION = 103 : T72C (SYNONYMOUS), T141A (SYNONYMOUS), G152A (R50H), T279C (SYNONYMOUS), T684G (SYNONYMOUS), T903C (SYNONYMOUS), T996C (SYNONYMOUS), A1049G (K349R), A1242C (SYNONYMOUS), T1278C (SYNONYMOUS), A1383T (SYNONYMOUS) P19 : M_NT = 8, M_NS = 2, U50 = 1.07, T50 = 43.8, EXPRESSION = 96 : T171G (SYNONYMOUS), A441G (SYNONYMOUS), A447G (SYNONYMOUS), A604G (N201D), A823T (T274S), A1230G (SYNONYMOUS), T1272C (SYNONYMOUS), T1386A (SYNONYMOUS) P2 : M_NT = 16, M_NS = 8, U50 = 0.90, T50 = 42.6, EXPRESSION = 33 : T81A (SYNONYMOUS), T97C (F32L), C129T (SYNONYMOUS), G152T (R50L), A183G (SYNONYMOUS), T198A (SYNONYMOUS), A340C (K113Q), A596C (Y198S), A648T (SYNONYMOUS), C707T (T235M), T819C (SYNONYMOUS), A823T (T274S), T858C (SYNONYMOUS), A1049G (K349R), T1312C (SYNONYMOUS), T1335A (F444L) P3 : M_NT = 14, M_NS = 6, U50 = 0.99, T50 = 44.6, EXPRESSION = 122 : T36C (SYNONYMOUS), A48G (SYNONYMOUS), T97C (F32L), C129T (SYNONYMOUS), G152T (R50L), A183G (SYNONYMOUS), C369T (SYNONYMOUS), A431G (E143G), G438A (SYNONYMOUS), A504T (SYNONYMOUS), A752G (D250G), G1021A (V340M), A1339T (I446L), T1380C (SYNONYMOUS) P1 : M_NT = 11, M_NS = 5, U50 = 0.62, T50 = 40.1, EXPRESSION = 101 : A67G (T22A), T72C (SYNONYMOUS), G152A (R50H), T406C (S135P), G438A (SYNONYMOUS), A723C (SYNONYMOUS), A882G (SYNONYMOUS), A959G (N319S), G1080A (SYNONYMOUS), T1152C (SYNONYMOUS), A1274T (E424V) P6 : M_NT = 15, M_NS = 6, U50 = 0.99, T50 = 40.6, EXPRESSION = 63 : C363T (SYNONYMOUS), C397A (SYNONYMOUS), A591G (SYNONYMOUS), T663A (SYNONYMOUS), T693G (S230R), T696C (SYNONYMOUS), T784A (F261I), A879C (E292D), T942C (SYNONYMOUS), G1045A (E348K), A1234G (T411A), A1260G (SYNONYMOUS), A1329G (SYNONYMOUS), T1376G (I458S), A1383T (SYNONYMOUS) P7 : M_NT = 6, M_NS = 1, U50 = 0.53, T50 = 37.5, EXPRESSION = 47 : A147T (SYNONYMOUS), G438A (SYNONYMOUS), A641C (N213T), T903C (SYNONYMOUS), A1242C (SYNONYMOUS), T1278C (SYNONYMOUS) P4 : M_NT = 12, M_NS = 6, U50 = 0.90, T50 = 41.7, EXPRESSION = 62 : A28G (K9E), T219C (SYNONYMOUS), T233A (F77Y), A282G (SYNONYMOUS), A367G (I122V), A666C (SYNONYMOUS), C746T (P248L), G891A (SYNONYMOUS), A1059G (SYNONYMOUS), C1069T (SYNONYMOUS), T1411C (NOSTOP), A1413T (NOSTOP) P8 : M_NT = 13, M_NS = 6, U50 = 0.67, T50 = 40.1, EXPRESSION = 67 : T45C (SYNONYMOUS), T61C (SYNONYMOUS), T144C (SYNONYMOUS), G152A (R50H), A159G (SYNONYMOUS), A183T (E60D), A285G (SYNONYMOUS), T406C (S135P), G438A (SYNONYMOUS), A755T (D251V), T1017A (D338E), T1152A (SYNONYMOUS), delCAT1408: (FRAMESHIFT) P9 : M_NT = 8, M_NS = 1, U50 = 0.78, T50 = 41.5, EXPRESSION = 58 : T279C (SYNONYMOUS), C630T (SYNONYMOUS), G636A (SYNONYMOUS), A657G (SYNONYMOUS), T996C (SYNONYMOUS), A1049G (K349R), A1242C (SYNONYMOUS), T1278C (SYNONYMOUS) P24 : M_NT = 6, M_NS = 1, U50 = 0.44, T50 = 38.6, EXPRESSION = 59 : A147T (SYNONYMOUS), G438A (SYNONYMOUS), A641C (N213T), T903C (SYNONYMOUS), A1242C (SYNONYMOUS), T1278C (SYNONYMOUS) P21 : M_NT = 11, M_NS = 5, U50 = 0.70, T50 = 39.4, EXPRESSION = 22 : T105C (SYNONYMOUS), A148G (T49V), C149T (T49V*), A297G (SYNONYMOUS), A329G (Q109R), C581T (P193L), A628G (I209V), A825T (SYNONYMOUS), A924G (SYNONYMOUS), A1059G (SYNONYMOUS), A1375G (I458V) P20 : M_NT = 9, M_NS = 1, U50 = 0.88, T50 = 42.5, EXPRESSION = 154 : G152A (R50H), A312G (SYNONYMOUS), T684G (SYNONYMOUS), A855G (SYNONYMOUS), A882G (SYNONYMOUS), T903C (SYNONYMOUS), T1209C (SYNONYMOUS), A1350G (SYNONYMOUS), T1392A (SYNONYMOUS) P23 : M_NT = 13, M_NS = 4, U50 = 0.90, T50 = 40.4, EXPRESSION = 119 : A69C (SYNONYMOUS), T105C (SYNONYMOUS), A148G (T49V), C149T (T49V*), A297G (SYNONYMOUS), C581T (P193L), A628G (I209V), A825T (SYNONYMOUS), A939G (SYNONYMOUS), T996C (SYNONYMOUS), C1235A (T411K), A1356G (SYNONYMOUS), A1413G (SYNONYMOUS) P22 : M_NT = 11, M_NS = 6, U50 = 0.50, T50 = 38.9, EXPRESSION = 75 : T207A (D68E), A242G (D80G), T453A (SYNONYMOUS), A783G (SYNONYMOUS), A870G (SYNONYMOUS), T894A (SYNONYMOUS), T1115C (V371A), T1152C (SYNONYMOUS), A1285G (N428D), C1391A (T463N), A1413T (NOSTOP) U1-G3 : M_NT = 7, M_NS = 4 : T315C (SYNONYMOUS), T453C (SYNONYMOUS), T520C (F173L), A879G (SYNONYMOUS), T976C (W325R), T1158: (FRAMESHIFT), A1304G (E434G) U1-G6 : M_NT = 9, M_NS = 6 : T315C (SYNONYMOUS), T453C (SYNONYMOUS), T520C (F173L), A879G (SYNONYMOUS), T976C (W325R), A1013G (E337G), T1158: (FRAMESHIFT), T1180C (F393L), A1304G (E434G) U1-G9 : M_NT = 11, M_NS = 8 : T315C (SYNONYMOUS), T453C (SYNONYMOUS), T520C (F173L), A728T (D242V), A879G (SYNONYMOUS), T976C (W325R), A1013G (E337G), T1158: (FRAMESHIFT), T1180C (F393L), A1252T (M417L), A1304G (E434G) U1-G12 : M_NT = 17, M_NS = 11 : T192C (SYNONYMOUS), T315C (SYNONYMOUS), T327C (SYNONYMOUS), T420C (SYNONYMOUS), T453C (SYNONYMOUS), T520C (F173L), A728T (D242V), A879G (SYNONYMOUS), T903G (D300E), T976C (W325R), A1013G (E337G), T1022C (V340A), A1133G (E377G), T1158: (FRAMESHIFT), T1180C (F393L), A1252T (M417L), A1304G (E434G) U2-G3 : M_NT = 4, M_NS = 4 : T2C (M0T), G793T (A264S), T997: (FRAMESHIFT), T1073A (I357N) U2-G6 : M_NT = 9, M_NS = 9 : T2C (M0T), A23T (Q7L), A217G (S72G), G262A (A87T), T308C (I102T), A386G (Q128R), G793T (A264S), T997: (FRAMESHIFT), T1073A (I357N) U2-G9 : M_NT = 13, M_NS = 13 : T2C (M0T), A23T (Q7L), A29G (K9R), A217G (S72G), G262A (A87T), T308C (I102T), A386G (Q128R), T487C (F162L), G793T (A264S), T997: (FRAMESHIFT), T1073A (I357N), T1171C (F390L), delCAT1408: (FRAMESHIFT) U2-G12 : M_NT = 14, M_NS = 13 : T2C (M0T), A23T (Q7L), A29G (K9R), A217G (S72G), G262A (A87T), T308C (I102T), A324G (SYNONYMOUS), A386G (Q128R), T487C (F162L), G793T (A264S), T997: (FRAMESHIFT), T1073A (I357N), T1171C (F390L), delCAT1408: (FRAMESHIFT) U3-G3 : M_NT = 4, M_NS = 2 : A252G (SYNONYMOUS), G262: (FRAMESHIFT), G583A (D194N), T1374C (SYNONYMOUS) U3-G6 : M_NT = 10, M_NS = 7 : A16G (M5V), A252G (SYNONYMOUS), G262: (FRAMESHIFT), T507A (D168E), G583A (D194N), T629C (I209T), A695T (D231V), T816A (SYNONYMOUS), A1144G (N381D), T1374C (SYNONYMOUS) U3-G9 : M_NT = 15, M_NS = 10 : A16G (M5V), A91T (M30L), A252G (SYNONYMOUS), G262: (FRAMESHIFT), A305: (FRAMESHIFT), T468C (SYNONYMOUS), T507A (D168E), G583A (D194N), T629C (I209T), A695T (D231V), A735G (SYNONYMOUS), T816A (SYNONYMOUS), A1144G (N381D), A1356T (K451N), T1374C (SYNONYMOUS) U3-G12 : M_NT = 21, M_NS = 14 : A16G (M5V), A91T (M30L), A252G (SYNONYMOUS), G262: (FRAMESHIFT), A305: (FRAMESHIFT), A325T (S108C), A341G (K113R), T468C (SYNONYMOUS), T507A (D168E), A509G (Q169R), A582G (SYNONYMOUS), G583A (D194N), T629C (I209T), A690G (SYNONYMOUS), A695T (D231V), A735G (SYNONYMOUS), T816A (SYNONYMOUS), A1144G (N381D), T1301C (I433T), A1356T (K451N), T1374C (SYNONYMOUS) U4-G3 : M_NT = 5, M_NS = 4 : T196C (S65P), T380C (L126P), A519T (SYNONYMOUS), A808G (T269A), A959T (N319I) U4-G6 : M_NT = 11, M_NS = 8 : T196C (S65P), T356C (M118T), T380C (L126P), A519T (SYNONYMOUS), A599G (E199G), A651T (SYNONYMOUS), G796A (G265R), A808G (T269A), A932G (Q310R), A959T (N319I), A1044G (SYNONYMOUS) U4-G9 : M_NT = 13, M_NS = 10 : T196C (S65P), T244C (F81L), T356C (M118T), T380C (L126P), A519T (SYNONYMOUS), A599G (E199G), A651T (SYNONYMOUS), G796A (G265R), A808G (T269A), A932G (Q310R), A959T (N319I), A1044G (SYNONYMOUS), T1265C (F421S) U4-G12 : M_NT = 15, M_NS = 12 : T196C (S65P), T244C (F81L), T356C (M118T), T380C (L126P), A519T (SYNONYMOUS), A599G (E199G), A651T (SYNONYMOUS), T764C (I254T), G796A (G265R), A808G (T269A), A932G (Q310R), A959T (N319I), A1044G (SYNONYMOUS), T1265C (F421S), delCAT1408: (FRAMESHIFT) M1-G1 : M_NT = 2, M_NS = 0 : T1101A (SYNONYMOUS), T1311C (SYNONYMOUS) M1-G2 : M_NT = 3, M_NS = 1 : T1101A (SYNONYMOUS), T1299A (D432E), T1311C (SYNONYMOUS) M1-G3 : M_NT = 3, M_NS = 1 : T1101A (SYNONYMOUS), T1299A (D432E), T1311C (SYNONYMOUS) M1-G4 : M_NT = 3, M_NS = 1 : T1101A (SYNONYMOUS), T1299A (D432E), T1311C (SYNONYMOUS) M1-G5 : M_NT = 3, M_NS = 1 : T1101A (SYNONYMOUS), T1299A (D432E), T1311C (SYNONYMOUS) M1-G7 : M_NT = 3, M_NS = 1 : T1101A (SYNONYMOUS), T1299A (D432E), T1311C (SYNONYMOUS) M1-G13 : M_NT = 3, M_NS = 1 : T1101A (SYNONYMOUS), T1299A (D432E), T1311C (SYNONYMOUS) M1-G17 : M_NT = 3, M_NS = 1 : T1101A (SYNONYMOUS), T1299A (D432E), T1311C (SYNONYMOUS) M1-G18 : M_NT = 3, M_NS = 1 : T1101A (SYNONYMOUS), T1299A (D432E), T1311C (SYNONYMOUS) M1-G21 : M_NT = 4, M_NS = 2 : T496C (F165L), T1101A (SYNONYMOUS), T1299A (D432E), T1311C (SYNONYMOUS) M1-G22 : M_NT = 4, M_NS = 2 : T496C (F165L), T1101A (SYNONYMOUS), T1299A (D432E), T1311C (SYNONYMOUS) M1-G24 : M_NT = 4, M_NS = 2 : T496C (F165L), T1101A (SYNONYMOUS), T1299A (D432E), T1311C (SYNONYMOUS) M1-G25 (M1) : M_NT = 4, M_NS = 2 : T496C (F165L), T1101A (SYNONYMOUS), T1299A (D432E), T1311C (SYNONYMOUS) M2-G1 : M_NT = 0, M_NS = 0 : no mutations M2-G2 : M_NT = 0, M_NS = 0 : no mutations M2-G4 : M_NT = 2, M_NS = 2 : C224T (A74V), A921C (K306N) M2-G7 : M_NT = 2, M_NS = 2 : C224T (A74V), A921C (K306N) M2-G8 : M_NT = 4, M_NS = 2 : C224T (A74V), T462A (SYNONYMOUS), T792C (SYNONYMOUS), A921C (K306N) M2-G9 : M_NT = 4, M_NS = 2 : C224T (A74V), T462A (SYNONYMOUS), T792C (SYNONYMOUS), A921C (K306N) M2-G10 : M_NT = 5, M_NS = 3 : C224T (A74V), T462A (SYNONYMOUS), T792C (SYNONYMOUS), A921C (K306N), A1016G (D338G) M2-G11 : M_NT = 5, M_NS = 3 : C224T (A74V), T462A (SYNONYMOUS), T792C (SYNONYMOUS), A921C (K306N), A1016G (D338G) M2-G13 : M_NT = 6, M_NS = 4 : T98A (F32Y), C224T (A74V), T462A (SYNONYMOUS), T792C (SYNONYMOUS), A921C (K306N), A1016G (D338G) M2-G14 : M_NT = 6, M_NS = 4 : T98A (F32Y), C224T (A74V), T462A (SYNONYMOUS), T792C (SYNONYMOUS), A921C (K306N), A1016G (D338G) M2-G17 : M_NT = 6, M_NS = 4 : T98A (F32Y), C224T (A74V), T462A (SYNONYMOUS), T792C (SYNONYMOUS), A921C (K306N), A1016G (D338G) M2-G18 : M_NT = 7, M_NS = 5 : T98A (F32Y), C224T (A74V), C277T (H92Y), T462A (SYNONYMOUS), T792C (SYNONYMOUS), A921C (K306N), A1016G (D338G) M2-G22 : M_NT = 7, M_NS = 5 : T98A (F32Y), C224T (A74V), C277T (H92Y), T462A (SYNONYMOUS), T792C (SYNONYMOUS), A921C (K306N), A1016G (D338G) M2-G23 : M_NT = 7, M_NS = 5 : T98A (F32Y), C224T (A74V), C277T (H92Y), T462A (SYNONYMOUS), T792C (SYNONYMOUS), A921C (K306N), A1016G (D338G) M2-G24 (M2) : M_NT = 8, M_NS = 6 : T98A (F32Y), C224T (A74V), C277T (H92Y), T462A (SYNONYMOUS), T792C (SYNONYMOUS), A921C (K306N), A1016G (D338G), A1252G (M417V) M3-G1 : M_NT = 1, M_NS = 1 : A403G (N134D) M3-G5 : M_NT = 2, M_NS = 1 : A403G (N134D), A861G (SYNONYMOUS) M3-G6 : M_NT = 3, M_NS = 2 : A403G (N134D), A861G (SYNONYMOUS), A1357G (K452E) M3-G15 : M_NT = 5, M_NS = 2 : A403G (N134D), A861G (SYNONYMOUS), A975G (SYNONYMOUS), A1357G (K452E), T1386A (SYNONYMOUS) M3-G16 : M_NT = 7, M_NS = 2 : A403G (N134D), A657G (SYNONYMOUS), A861G (SYNONYMOUS), A975G (SYNONYMOUS), A1131T (SYNONYMOUS), A1357G (K452E), T1386A (SYNONYMOUS) M3-G17 : M_NT = 7, M_NS = 2 : A403G (N134D), A657G (SYNONYMOUS), A861G (SYNONYMOUS), A975G (SYNONYMOUS), A1131T (SYNONYMOUS), A1357G (K452E), T1386A (SYNONYMOUS) M3-G20 : M_NT = 8, M_NS = 3 : A403G (N134D), A657G (SYNONYMOUS), A861G (SYNONYMOUS), A975G (SYNONYMOUS), A1094G (K364R), A1131T (SYNONYMOUS), A1357G (K452E), T1386A (SYNONYMOUS) M3-G22 : M_NT = 9, M_NS = 4 : A403G (N134G), A404G (N134G*), A657G (SYNONYMOUS), A861G (SYNONYMOUS), A975G (SYNONYMOUS), A1094G (K364R), A1131T (SYNONYMOUS), A1357G (K452E), T1386A (SYNONYMOUS) M3-G25 (M3) : M_NT = 9, M_NS = 4 : A403G (N134G), A404G (N134G*), A657G (SYNONYMOUS), A861G (SYNONYMOUS), A975G (SYNONYMOUS), A1094G (K364R), A1131T (SYNONYMOUS), A1357G (K452E), T1386A (SYNONYMOUS) M4-G1 : M_NT = 0, M_NS = 0 : no mutations M4-G5 : M_NT = 2, M_NS = 2 : A1G (M0V), A719T (H239L) M4-G7 : M_NT = 2, M_NS = 2 : A1G (M0V), A719T (H239L) M4-G12 : M_NT = 5, M_NS = 3 : A1G (M0V), A28G (K9E), A519G (SYNONYMOUS), A719T (H239L), A723G (SYNONYMOUS) M4-G13 : M_NT = 5, M_NS = 3 : A1G (M0V), A28G (K9E), A519G (SYNONYMOUS), A719T (H239L), A723G (SYNONYMOUS) M4-G14 : M_NT = 5, M_NS = 3 : A1G (M0V), A28G (K9E), A519G (SYNONYMOUS), A719T (H239L), A723G (SYNONYMOUS) M4-G15 : M_NT = 5, M_NS = 3 : A1G (M0V), A28G (K9E), A519G (SYNONYMOUS), A719T (H239L), A723G (SYNONYMOUS) M4-G16 : M_NT = 5, M_NS = 3 : A1G (M0V), A28G (K9E), A519G (SYNONYMOUS), A719T (H239L), A723G (SYNONYMOUS) M4-G19 : M_NT = 5, M_NS = 3 : A1G (M0V), A28G (K9E), A519G (SYNONYMOUS), A719T (H239L), A723G (SYNONYMOUS) M4-G20 : M_NT = 6, M_NS = 4 : A1G (M0V), A28G (K9E), A519G (SYNONYMOUS), A719T (H239L), A723G (SYNONYMOUS), T863C (L287S) M4-G21 : M_NT = 6, M_NS = 4 : A1G (M0V), A28G (K9E), A519G (SYNONYMOUS), A719T (H239L), A723G (SYNONYMOUS), T863C (L287S) M4-G23 : M_NT = 8, M_NS = 4 : A1G (M0V), A28G (K9E), T243C (SYNONYMOUS), A519G (SYNONYMOUS), A719T (H239L), A723G (SYNONYMOUS), T863C (L287S), C1060T (SYNONYMOUS) M4-G24 (M4) : M_NT = 8, M_NS = 4 : A1G (M0V), A28G (K9E), T243C (SYNONYMOUS), A519G (SYNONYMOUS), A719T (H239L), A723G (SYNONYMOUS), T863C (L287S), C1060T (SYNONYMOUS) M5-G3 : M_NT = 2, M_NS = 0 : A399G (SYNONYMOUS), G708A (SYNONYMOUS) M5-G4 : M_NT = 3, M_NS = 1 : A399G (SYNONYMOUS), A551G (D183G), G708A (SYNONYMOUS) M5-G6 : M_NT = 5, M_NS = 2 : G152T (R50L), A399G (SYNONYMOUS), A551G (D183G), G708A (SYNONYMOUS), A981T (SYNONYMOUS) M5-G7 : M_NT = 5, M_NS = 2 : G152T (R50L), A399G (SYNONYMOUS), A551G (D183G), G708A (SYNONYMOUS), A981T (SYNONYMOUS) M5-G13 : M_NT = 5, M_NS = 2 : G152T (R50L), A399G (SYNONYMOUS), A551G (D183G), G708A (SYNONYMOUS), A981T (SYNONYMOUS) M5-G14 : M_NT = 5, M_NS = 2 : G152T (R50L), A399G (SYNONYMOUS), A551G (D183G), G708A (SYNONYMOUS), A981T (SYNONYMOUS) M5-G21 : M_NT = 5, M_NS = 2 : G152T (R50L), A399G (SYNONYMOUS), A551G (D183G), G708A (SYNONYMOUS), A981T (SYNONYMOUS) M5-G22 : M_NT = 5, M_NS = 2 : G152T (R50L), A399G (SYNONYMOUS), A551G (D183G), G708A (SYNONYMOUS), A981T (SYNONYMOUS) M5-G23 : M_NT = 5, M_NS = 2 : G152T (R50L), A399G (SYNONYMOUS), A551G (D183G), G708A (SYNONYMOUS), A981T (SYNONYMOUS) M5-G24 : M_NT = 5, M_NS = 2 : G152T (R50L), A399G (SYNONYMOUS), A551G (D183G), G708A (SYNONYMOUS), A981T (SYNONYMOUS) M5-G25 (M5) : M_NT = 7, M_NS = 3 : G152T (R50L), A399G (SYNONYMOUS), A551G (D183G), G708A (SYNONYMOUS), A981T (SYNONYMOUS), G1054A (D351N), A1359G (SYNONYMOUS) M6-G5 : M_NT = 0, M_NS = 0 : no mutations M6-G6 : M_NT = 0, M_NS = 0 : no mutations M6-G9 : M_NT = 2, M_NS = 1 : T8C (I2T), C1206T (SYNONYMOUS) M6-G10 : M_NT = 2, M_NS = 1 : T8C (I2T), C1206T (SYNONYMOUS) M6-G13 : M_NT = 3, M_NS = 1 : T8C (I2T), G570A (SYNONYMOUS), C1206T (SYNONYMOUS) M6-G19 : M_NT = 4, M_NS = 2 : T8C (I2T), G339T (M112I), G570A (SYNONYMOUS), C1206T (SYNONYMOUS) M6-G20 : M_NT = 4, M_NS = 2 : T8C (I2T), G339T (M112I), G570A (SYNONYMOUS), C1206T (SYNONYMOUS) M6-G21 : M_NT = 5, M_NS = 3 : T8C (I2T), G70A (D23N), G339T (M112I), G570A (SYNONYMOUS), C1206T (SYNONYMOUS) M6-G22 : M_NT = 5, M_NS = 3 : T8C (I2T), G70A (D23N), G339T (M112I), G570A (SYNONYMOUS), C1206T (SYNONYMOUS) M6-G24 : M_NT = 5, M_NS = 3 : T8C (I2T), G70A (D23N), G339T (M112I), G570A (SYNONYMOUS), C1206T (SYNONYMOUS) M6-G25 (M6) : M_NT = 5, M_NS = 3 : T8C (I2T), G70A (D23N), G339T (M112I), G570A (SYNONYMOUS), C1206T (SYNONYMOUS) M7-G2 : M_NT = 2, M_NS = 1 : A849G (SYNONYMOUS), A1046C (E348A) M7-G3 : M_NT = 2, M_NS = 1 : A849G (SYNONYMOUS), A1046C (E348A) M7-G4 : M_NT = 2, M_NS = 1 : A849G (SYNONYMOUS), A1046C (E348A) M7-G5 : M_NT = 2, M_NS = 1 : A849G (SYNONYMOUS), A1046C (E348A) M7-G6 : M_NT = 4, M_NS = 2 : A849G (SYNONYMOUS), A1037T (Y345F), A1046C (E348A), T1197G (SYNONYMOUS) M7-G7 : M_NT = 6, M_NS = 3 : C153T (SYNONYMOUS), A624C (E207D), A849G (SYNONYMOUS), A1037T (Y345F), A1046C (E348A), T1197G (SYNONYMOUS) M7-G9 : M_NT = 6, M_NS = 3 : C153T (SYNONYMOUS), A624C (E207D), A849G (SYNONYMOUS), A1037T (Y345F), A1046C (E348A), T1197G (SYNONYMOUS) M7-G10 : M_NT = 7, M_NS = 4 : C153T (SYNONYMOUS), A624C (E207D), A849G (SYNONYMOUS), A1037T (Y345F), A1046C (E348A), T1197G (SYNONYMOUS), A1394G (H464R) M7-G15 : M_NT = 7, M_NS = 4 : C153T (SYNONYMOUS), A624C (E207D), A849G (SYNONYMOUS), A1037T (Y345F), A1046C (E348A), T1197G (SYNONYMOUS), A1394G (H464R) M7-G16 : M_NT = 7, M_NS = 4 : C153T (SYNONYMOUS), A624C (E207D), A849G (SYNONYMOUS), A1037T (Y345F), A1046C (E348A), T1197G (SYNONYMOUS), A1394G (H464R) M7-G17 : M_NT = 8, M_NS = 4 : C153T (SYNONYMOUS), A624C (E207D), A732G (SYNONYMOUS), A849G (SYNONYMOUS), A1037T (Y345F), A1046C (E348A), T1197G (SYNONYMOUS), A1394G (H464R) M7-G18 : M_NT = 9, M_NS = 5 : C153T (SYNONYMOUS), A605C (N201T), A624C (E207D), A732G (SYNONYMOUS), A849G (SYNONYMOUS), A1037T (Y345F), A1046C (E348A), T1197G (SYNONYMOUS), A1394G (H464R) M7-G19 : M_NT = 9, M_NS = 5 : C153T (SYNONYMOUS), A605C (N201T), A624C (E207D), A732G (SYNONYMOUS), A849G (SYNONYMOUS), A1037T (Y345F), A1046C (E348A), T1197G (SYNONYMOUS), A1394G (H464R) M7-G21 : M_NT = 9, M_NS = 5 : C153T (SYNONYMOUS), A605C (N201T), A624C (E207D), A732G (SYNONYMOUS), A849G (SYNONYMOUS), A1037T (Y345F), A1046C (E348A), T1197G (SYNONYMOUS), A1394G (H464R) M7-G22 : M_NT = 9, M_NS = 5 : C153T (SYNONYMOUS), A605C (N201T), A624C (E207D), A732G (SYNONYMOUS), A849G (SYNONYMOUS), A1037T (Y345F), A1046C (E348A), T1197G (SYNONYMOUS), A1394G (H464R) M7-G23 : M_NT = 9, M_NS = 5 : C153T (SYNONYMOUS), A605C (N201T), A624C (E207D), A732G (SYNONYMOUS), A849G (SYNONYMOUS), A1037T (Y345F), A1046C (E348A), T1197G (SYNONYMOUS), A1394G (H464R) M7-G24 : M_NT = 9, M_NS = 5 : C153T (SYNONYMOUS), A605C (N201T), A624C (E207D), A732G (SYNONYMOUS), A849G (SYNONYMOUS), A1037T (Y345F), A1046C (E348A), T1197G (SYNONYMOUS), A1394G (H464R) M7-G25 (M7) : M_NT = 9, M_NS = 5 : C153T (SYNONYMOUS), A605C (N201T), A624C (E207D), A732G (SYNONYMOUS), A849G (SYNONYMOUS), A1037T (Y345F), A1046C (E348A), T1197G (SYNONYMOUS), A1394G (H464R) M8-G3 : M_NT = 1, M_NS = 0 : A27G (SYNONYMOUS) M8-G5 : M_NT = 3, M_NS = 2 : A27G (SYNONYMOUS), A509T (Q169L), delCAT1408: (FRAMESHIFT) M8-G6 : M_NT = 4, M_NS = 2 : A27G (SYNONYMOUS), A509T (Q169L), T942C (SYNONYMOUS), delCAT1408: (FRAMESHIFT) M8-G7 : M_NT = 5, M_NS = 2 : A27G (SYNONYMOUS), A84G (SYNONYMOUS), A509T (Q169L), T942C (SYNONYMOUS), delCAT1408: (FRAMESHIFT) M8-G9 : M_NT = 7, M_NS = 3 : A27G (SYNONYMOUS), A84G (SYNONYMOUS), A509T (Q169L), G574T (V191L), T942C (SYNONYMOUS), A1131T (SYNONYMOUS), delCATCAT1405: (FRAMESHIFT) M8-G10 : M_NT = 8, M_NS = 3 : A27G (SYNONYMOUS), A84G (SYNONYMOUS), A509T (Q169L), G574T (V191L), G759A (SYNONYMOUS), T942C (SYNONYMOUS), A1131T (SYNONYMOUS), delCATCAT1405: (FRAMESHIFT) M8-G11 : M_NT = 8, M_NS = 3 : A27G (SYNONYMOUS), A84G (SYNONYMOUS), A509T (Q169L), G574T (V191L), G759A (SYNONYMOUS), T942C (SYNONYMOUS), A1131T (SYNONYMOUS), delCATCAT1405: (FRAMESHIFT) M8-G12 : M_NT = 9, M_NS = 3 : A27G (SYNONYMOUS), A84G (SYNONYMOUS), A509T (Q169L), G574T (V191L), G759A (SYNONYMOUS), A885G (SYNONYMOUS), T942C (SYNONYMOUS), A1131T (SYNONYMOUS), delCATCAT1405: (FRAMESHIFT) M8-G13 : M_NT = 9, M_NS = 3 : A27G (SYNONYMOUS), A84G (SYNONYMOUS), A509T (Q169L), G574T (V191L), G759A (SYNONYMOUS), A885G (SYNONYMOUS), T942C (SYNONYMOUS), A1131T (SYNONYMOUS), delCATCAT1405: (FRAMESHIFT) M8-G15 : M_NT = 10, M_NS = 4 : A27G (SYNONYMOUS), A84G (SYNONYMOUS), A125T (K41I), A509T (Q169L), G574T (V191L), G759A (SYNONYMOUS), A885G (SYNONYMOUS), T942C (SYNONYMOUS), A1131T (SYNONYMOUS), delCATCAT1405: (FRAMESHIFT) M8-G16 : M_NT = 10, M_NS = 4 : A27G (SYNONYMOUS), A84G (SYNONYMOUS), A125T (K41I), A509T (Q169L), G574T (V191L), G759A (SYNONYMOUS), A885G (SYNONYMOUS), T942C (SYNONYMOUS), A1131T (SYNONYMOUS), delCATCAT1405: (FRAMESHIFT) M8-G17 : M_NT = 11, M_NS = 5 : A27G (SYNONYMOUS), A84G (SYNONYMOUS), A125T (K41I), A509T (Q169L), G574T (V191L), G759A (SYNONYMOUS), A763G (I254V), A885G (SYNONYMOUS), T942C (SYNONYMOUS), A1131T (SYNONYMOUS), delCATCAT1405: (FRAMESHIFT) M8-G24 : M_NT = 11, M_NS = 5 : A27G (SYNONYMOUS), A84G (SYNONYMOUS), A125T (K41I), A509T (Q169L), G574T (V191L), G759A (SYNONYMOUS), A763G (I254V), A885G (SYNONYMOUS), T942C (SYNONYMOUS), A1131T (SYNONYMOUS), delCATCAT1405: (FRAMESHIFT) M8-G25 (M8) : M_NT = 12, M_NS = 6 : A27G (SYNONYMOUS), A84G (SYNONYMOUS), A125T (K41I), A509T (Q169L), G574T (V191L), G759A (SYNONYMOUS), A763G (I254V), A885G (SYNONYMOUS), T942C (SYNONYMOUS), C992T (A330V), A1131T (SYNONYMOUS), delCATCAT1405: (FRAMESHIFT) M11-G5 : M_NT = 1, M_NS = 0 : A1359G (SYNONYMOUS) M11-G8 : M_NT = 3, M_NS = 0 : A876G (SYNONYMOUS), A1359G (SYNONYMOUS), T1380A (SYNONYMOUS) M11-G9 : M_NT = 4, M_NS = 1 : A876G (SYNONYMOUS), T994A (F331I), A1359G (SYNONYMOUS), T1380A (SYNONYMOUS) M11-G11 : M_NT = 5, M_NS = 1 : A876G (SYNONYMOUS), T994A (F331I), T996C (SYNONYMOUS), A1359G (SYNONYMOUS), T1380A (SYNONYMOUS) M11-G16 : M_NT = 5, M_NS = 1 : A876G (SYNONYMOUS), T994A (F331I), T996C (SYNONYMOUS), A1359G (SYNONYMOUS), T1380A (SYNONYMOUS) M11-G19 : M_NT = 5, M_NS = 1 : A876G (SYNONYMOUS), T994A (F331I), T996C (SYNONYMOUS), A1359G (SYNONYMOUS), T1380A (SYNONYMOUS) M11-G22 : M_NT = 5, M_NS = 1 : A876G (SYNONYMOUS), T994A (F331I), T996C (SYNONYMOUS), A1359G (SYNONYMOUS), T1380A (SYNONYMOUS) M11-G24 (M11) : M_NT = 6, M_NS = 2 : A876G (SYNONYMOUS), T994A (F331I), T996C (SYNONYMOUS), A1359G (SYNONYMOUS), C1366T (L455F), T1380A (SYNONYMOUS) M12-G4 : M_NT = 2, M_NS = 2 : T356C (M118T), T618A (F205L) M12-G6 : M_NT = 2, M_NS = 2 : T356C (M118T), T618A (F205L) M12-G8 : M_NT = 2, M_NS = 2 : T356C (M118T), T618A (F205L) M12-G14 : M_NT = 5, M_NS = 4 : T356C (M118T), T507A (D168E), T618A (F205L), A1062T (SYNONYMOUS), delCAT1408: (FRAMESHIFT) M12-G16 : M_NT = 5, M_NS = 4 : T356C (M118T), T507A (D168E), T618A (F205L), A1062T (SYNONYMOUS), delCAT1408: (FRAMESHIFT) M12-G18 : M_NT = 6, M_NS = 4 : A147G (SYNONYMOUS), T356C (M118T), T507A (D168E), T618A (F205L), A1062T (SYNONYMOUS), delCAT1408: (FRAMESHIFT) M12-G24 (M12) : M_NT = 6, M_NS = 4 : A147G (SYNONYMOUS), T356C (M118T), T507A (D168E), T618A (F205L), A1062T (SYNONYMOUS), delCAT1408: (FRAMESHIFT) M13-G2 : M_NT = 2, M_NS = 1 : G31T (A10S), A624G (SYNONYMOUS) M13-G5 : M_NT = 5, M_NS = 3 : G31T (A10S), A274T (T91S), A624G (SYNONYMOUS), A668G (D222G), A1014G (SYNONYMOUS) M13-G6 : M_NT = 5, M_NS = 3 : G31T (A10S), A274T (T91S), A624G (SYNONYMOUS), A668G (D222G), A1014G (SYNONYMOUS) M13-G7 : M_NT = 5, M_NS = 3 : G31T (A10S), A274T (T91S), A624G (SYNONYMOUS), A668G (D222G), A1014G (SYNONYMOUS) M13-G10 : M_NT = 7, M_NS = 4 : G31T (A10S), A274T (T91S), A624G (SYNONYMOUS), A668G (D222G), A1014G (SYNONYMOUS), T1411C (NOSTOP), A1412G (SYNONYMOUS) M13-G12 : M_NT = 7, M_NS = 4 : G31T (A10S), A274T (T91S), A624G (SYNONYMOUS), A668G (D222G), A1014G (SYNONYMOUS), T1411C (NOSTOP), A1412G (SYNONYMOUS) M13-G14 : M_NT = 8, M_NS = 5 : G31T (A10S), A274T (T91S), A624G (SYNONYMOUS), A668G (D222G), A1014G (SYNONYMOUS), C1391A (T463N), T1411C (NOSTOP), A1412G (SYNONYMOUS) M13-G16 : M_NT = 9, M_NS = 5 : G31T (A10S), T61C (SYNONYMOUS), A274T (T91S), A624G (SYNONYMOUS), A668G (D222G), A1014G (SYNONYMOUS), C1391A (T463N), T1411C (NOSTOP), A1412G (SYNONYMOUS) M13-G17 : M_NT = 10, M_NS = 6 : G31T (A10S), T61C (SYNONYMOUS), A274T (T91S), A624G (SYNONYMOUS), A668G (D222G), A1014G (SYNONYMOUS), G1065A (M354I), C1391A (T463N), T1411C (NOSTOP), A1412G (SYNONYMOUS) M13-G21 : M_NT = 10, M_NS = 6 : G31T (A10S), T61C (SYNONYMOUS), A274T (T91S), A624G (SYNONYMOUS), A668G (D222G), A1014G (SYNONYMOUS), G1065A (M354I), C1391A (T463N), T1411C (NOSTOP), A1412G (SYNONYMOUS) M13-G22 : M_NT = 11, M_NS = 6 : G31T (A10S), T61C (SYNONYMOUS), T88C (SYNONYMOUS), A274T (T91S), A624G (SYNONYMOUS), A668G (D222G), A1014G (SYNONYMOUS), G1065A (M354I), C1391A (T463N), T1411C (NOSTOP), A1412G (SYNONYMOUS) M13-G24 : M_NT = 12, M_NS = 6 : G31T (A10S), T61C (SYNONYMOUS), T88C (SYNONYMOUS), A252G (SYNONYMOUS), A274T (T91S), A624G (SYNONYMOUS), A668G (D222G), A1014G (SYNONYMOUS), G1065A (M354I), C1391A (T463N), T1411C (NOSTOP), A1412G (SYNONYMOUS) M13-G25 (M13) : M_NT = 14, M_NS = 7 : G31T (A10S), T61C (SYNONYMOUS), T88C (SYNONYMOUS), A252G (SYNONYMOUS), A274T (T91S), A624G (SYNONYMOUS), A668G (D222G), A1014G (SYNONYMOUS), A1029C (SYNONYMOUS), G1065A (M354I), A1143C (E380D), C1391A (T463N), T1411C (NOSTOP), A1412G (SYNONYMOUS) M14-G5 (M14) : M_NT = 1, M_NS = 1 : T98C (F32S) M15-G3 : M_NT = 0, M_NS = 0 : no mutations M15-G4 : M_NT = 2, M_NS = 1 : T141C (SYNONYMOUS), A563G (K187R) M15-G5 : M_NT = 4, M_NS = 3 : T141C (SYNONYMOUS), C149T (T49M), A563G (K187R), A1072G (I357V) M15-G6 : M_NT = 4, M_NS = 3 : T141C (SYNONYMOUS), C149T (T49M), A563G (K187R), A1072G (I357V) M15-G7 : M_NT = 5, M_NS = 4 : T141C (SYNONYMOUS), C149T (T49M), A563G (K187R), A823T (T274S), A1072G (I357V) M15-G10 : M_NT = 5, M_NS = 4 : T141C (SYNONYMOUS), C149T (T49M), A563G (K187R), A823T (T274S), A1072G (I357V) M15-G11 : M_NT = 7, M_NS = 4 : T72C (SYNONYMOUS), T141C (SYNONYMOUS), C149T (T49M), A563G (K187R), A823T (T274S), A1072G (I357V), T1318C (SYNONYMOUS) M15-G13 : M_NT = 8, M_NS = 5 : T72C (SYNONYMOUS), T141C (SYNONYMOUS), C149T (T49M), G223C (A74P), A563G (K187R), A823T (T274S), A1072G (I357V), T1318C (SYNONYMOUS) M15-G14 : M_NT = 8, M_NS = 5 : T72C (SYNONYMOUS), T141C (SYNONYMOUS), C149T (T49M), G223C (A74P), A563G (K187R), A823T (T274S), A1072G (I357V), T1318C (SYNONYMOUS) M15-G16 : M_NT = 9, M_NS = 5 : T72C (SYNONYMOUS), T141C (SYNONYMOUS), C149T (T49M), G223C (A74P), A563G (K187R), T753C (SYNONYMOUS), A823T (T274S), A1072G (I357V), T1318C (SYNONYMOUS) M15-G18 : M_NT = 9, M_NS = 5 : T72C (SYNONYMOUS), T141C (SYNONYMOUS), C149T (T49M), G223C (A74P), A563G (K187R), T753C (SYNONYMOUS), A823T (T274S), A1072G (I357V), T1318C (SYNONYMOUS) M15-G22 : M_NT = 10, M_NS = 6 : T8A (I2N), T72C (SYNONYMOUS), T141C (SYNONYMOUS), C149T (T49M), G223C (A74P), A563G (K187R), T753C (SYNONYMOUS), A823T (T274S), A1072G (I357V), T1318C (SYNONYMOUS) M15-G23 : M_NT = 10, M_NS = 6 : T8A (I2N), T72C (SYNONYMOUS), T141C (SYNONYMOUS), C149T (T49M), G223C (A74P), A563G (K187R), T753C (SYNONYMOUS), A823T (T274S), A1072G (I357V), T1318C (SYNONYMOUS) M15-G24 : M_NT = 10, M_NS = 6 : T8A (I2N), T72C (SYNONYMOUS), T141C (SYNONYMOUS), C149T (T49M), G223C (A74P), A563G (K187R), T753C (SYNONYMOUS), A823T (T274S), A1072G (I357V), T1318C (SYNONYMOUS) M15-G25 (M15) : M_NT = 10, M_NS = 6 : T8A (I2N), T72C (SYNONYMOUS), T141C (SYNONYMOUS), C149T (T49M), G223C (A74P), A563G (K187R), T753C (SYNONYMOUS), A823T (T274S), A1072G (I357V), T1318C (SYNONYMOUS) M16-G1 : M_NT = 3, M_NS = 2 : A296G (K98R), T1381A (S460T), T1407C (SYNONYMOUS) M16-G2 : M_NT = 3, M_NS = 2 : A296G (K98R), T1381A (S460T), T1407C (SYNONYMOUS) M16-G3 : M_NT = 4, M_NS = 2 : T105C (SYNONYMOUS), A296G (K98R), T1381A (S460T), T1407C (SYNONYMOUS) M16-G4 : M_NT = 4, M_NS = 2 : T105C (SYNONYMOUS), A296G (K98R), T1381A (S460T), T1407C (SYNONYMOUS) M16-G9 : M_NT = 4, M_NS = 2 : T105C (SYNONYMOUS), A296G (K98R), T1381A (S460T), T1407C (SYNONYMOUS) M16-G10 : M_NT = 5, M_NS = 2 : T105C (SYNONYMOUS), A296G (K98R), C471T (SYNONYMOUS), T1381A (S460T), T1407C (SYNONYMOUS) M16-G11 : M_NT = 5, M_NS = 2 : T105C (SYNONYMOUS), A296G (K98R), C471T (SYNONYMOUS), T1381A (S460T), T1407C (SYNONYMOUS) M16-G16 : M_NT = 5, M_NS = 2 : T105C (SYNONYMOUS), A296G (K98R), C471T (SYNONYMOUS), T1381A (S460T), T1407C (SYNONYMOUS) M16-G18 : M_NT = 5, M_NS = 2 : T105C (SYNONYMOUS), A296G (K98R), C471T (SYNONYMOUS), T1381A (S460T), T1407C (SYNONYMOUS) M16-G19 : M_NT = 5, M_NS = 2 : T105C (SYNONYMOUS), A296G (K98R), C471T (SYNONYMOUS), T1381A (S460T), T1407C (SYNONYMOUS) M16-G20 : M_NT = 6, M_NS = 2 : T105C (SYNONYMOUS), A296G (K98R), C310T (SYNONYMOUS), C471T (SYNONYMOUS), T1381A (S460T), T1407C (SYNONYMOUS) M16-G22 : M_NT = 6, M_NS = 2 : T105C (SYNONYMOUS), A296G (K98R), C310T (SYNONYMOUS), C471T (SYNONYMOUS), T1381A (S460T), T1407C (SYNONYMOUS) M16-G25 (M16) : M_NT = 6, M_NS = 2 : T105C (SYNONYMOUS), A296G (K98R), C310T (SYNONYMOUS), C471T (SYNONYMOUS), T1381A (S460T), T1407C (SYNONYMOUS) M17-G2 : M_NT = 4, M_NS = 1 : T109C (SYNONYMOUS), T127C (F42L), T322C (SYNONYMOUS), A399T (SYNONYMOUS) M17-G3 : M_NT = 5, M_NS = 1 : T109C (SYNONYMOUS), T127C (F42L), T322C (SYNONYMOUS), A399T (SYNONYMOUS), A864G (SYNONYMOUS) M17-G8 : M_NT = 6, M_NS = 2 : T109C (SYNONYMOUS), T127C (F42L), T322C (SYNONYMOUS), A399T (SYNONYMOUS), A864G (SYNONYMOUS), delCAT1408: (FRAMESHIFT) M17-G10 : M_NT = 7, M_NS = 3 : T109C (SYNONYMOUS), T127C (F42L), T322C (SYNONYMOUS), A399T (SYNONYMOUS), A864G (SYNONYMOUS), A1400G (H466R), delCAT1408: (FRAMESHIFT) M17-G13 : M_NT = 7, M_NS = 3 : T109C (SYNONYMOUS), T127C (F42L), T322C (SYNONYMOUS), A399T (SYNONYMOUS), A864G (SYNONYMOUS), A1400G (H466R), delCAT1408: (FRAMESHIFT) M17-G15 : M_NT = 7, M_NS = 3 : T109C (SYNONYMOUS), T127C (F42L), T322C (SYNONYMOUS), A399T (SYNONYMOUS), A864G (SYNONYMOUS), A1400G (H466R), delCAT1408: (FRAMESHIFT) M17-G16 : M_NT = 7, M_NS = 3 : T109C (SYNONYMOUS), T127C (F42L), T322C (SYNONYMOUS), A399T (SYNONYMOUS), A864G (SYNONYMOUS), A1400G (H466R), delCAT1408: (FRAMESHIFT) M17-G17 : M_NT = 8, M_NS = 3 : T109C (SYNONYMOUS), T127C (F42L), T322C (SYNONYMOUS), A399T (SYNONYMOUS), T660A (SYNONYMOUS), A864G (SYNONYMOUS), A1400G (H466R), delCAT1408: (FRAMESHIFT) M17-G19 : M_NT = 8, M_NS = 3 : T109C (SYNONYMOUS), T127C (F42L), T322C (SYNONYMOUS), A399T (SYNONYMOUS), T660A (SYNONYMOUS), A864G (SYNONYMOUS), A1400G (H466R), delCAT1408: (FRAMESHIFT) M17-G25 (M17) : M_NT = 10, M_NS = 4 : T109C (SYNONYMOUS), A125G (K41R), T127C (F42L), T322C (SYNONYMOUS), A399T (SYNONYMOUS), T660A (SYNONYMOUS), A864G (SYNONYMOUS), T1158A (SYNONYMOUS), A1400G (H466R), delCAT1408: (FRAMESHIFT) M18-G2 : M_NT = 1, M_NS = 1 : T146C (V48A) M18-G4 : M_NT = 1, M_NS = 1 : T146C (V48A) M18-G7 : M_NT = 3, M_NS = 2 : T146C (V48A), T233C (F77S), T684A (SYNONYMOUS) M18-G15 : M_NT = 4, M_NS = 3 : T146C (V48A), T233C (F77S), T684A (SYNONYMOUS), C1396T (H465Y) M18-G16 : M_NT = 4, M_NS = 3 : T146C (V48A), T233C (F77S), T684A (SYNONYMOUS), C1396T (H465Y) M18-G17 : M_NT = 4, M_NS = 3 : T146C (V48A), T233C (F77S), T684A (SYNONYMOUS), C1396T (H465Y) M18-G21 (M18) : M_NT = 5, M_NS = 3 : T109C (SYNONYMOUS), T146C (V48A), T233C (F77S), T684A (SYNONYMOUS), C1396T (H465Y) M19-G4 : M_NT = 1, M_NS = 0 : C756T (SYNONYMOUS) M19-G6 : M_NT = 3, M_NS = 2 : A422T (E140V), C756T (SYNONYMOUS), C889T (R296W) M19-G7 : M_NT = 3, M_NS = 2 : A422T (E140V), C756T (SYNONYMOUS), C889T (R296W) M19-G10 : M_NT = 4, M_NS = 2 : A422T (E140V), C756T (SYNONYMOUS), T816C (SYNONYMOUS), C889T (R296W) M19-G11 : M_NT = 5, M_NS = 3 : A422T (E140V), C756T (SYNONYMOUS), T816C (SYNONYMOUS), C889T (R296W), T1407A (H468Q) M19-G13 : M_NT = 5, M_NS = 3 : A422T (E140V), C756T (SYNONYMOUS), T816C (SYNONYMOUS), C889T (R296W), T1407A (H468Q) M19-G14 : M_NT = 5, M_NS = 3 : A422T (E140V), C756T (SYNONYMOUS), T816C (SYNONYMOUS), C889T (R296W), T1407A (H468Q) M19-G15 : M_NT = 6, M_NS = 3 : A422T (E140V), T699C (SYNONYMOUS), C756T (SYNONYMOUS), T816C (SYNONYMOUS), C889T (R296W), T1407A (H468Q) M19-G16 : M_NT = 6, M_NS = 3 : A422T (E140V), T699C (SYNONYMOUS), C756T (SYNONYMOUS), T816C (SYNONYMOUS), C889T (R296W), T1407A (H468Q) M19-G18 : M_NT = 6, M_NS = 3 : A422T (E140V), T699C (SYNONYMOUS), C756T (SYNONYMOUS), T816C (SYNONYMOUS), C889T (R296W), T1407A (H468Q) M19-G21 : M_NT = 9, M_NS = 5 : T196A (S65T), A422T (E140V), A686T (E228V), T699C (SYNONYMOUS), C756T (SYNONYMOUS), T816C (SYNONYMOUS), C889T (R296W), T1068A (SYNONYMOUS), T1407A (H468Q) M19-G23 (M19) : M_NT = 9, M_NS = 5 : T196A (S65T), A422T (E140V), A686T (E228V), T699C (SYNONYMOUS), C756T (SYNONYMOUS), T816C (SYNONYMOUS), C889T (R296W), T1068A (SYNONYMOUS), T1407A (H468Q) M20-G2 : M_NT = 1, M_NS = 1 : A1390G (T463A) M20-G4 : M_NT = 2, M_NS = 1 : A69T (SYNONYMOUS), A1390G (T463A) M20-G5 : M_NT = 3, M_NS = 1 : A69T (SYNONYMOUS), A1260G (SYNONYMOUS), A1390G (T463A) M20-G6 : M_NT = 4, M_NS = 2 : A69T (SYNONYMOUS), A1260G (SYNONYMOUS), A1322G (K440R), A1390G (T463A) M20-G11 : M_NT = 6, M_NS = 3 : A69T (SYNONYMOUS), A408G (SYNONYMOUS), T1042A (L347I), A1260G (SYNONYMOUS), A1322G (K440R), A1390G (T463A) M20-G12 : M_NT = 7, M_NS = 4 : A69T (SYNONYMOUS), A408G (SYNONYMOUS), T1042A (L347I), A1260G (SYNONYMOUS), A1322G (K440R), A1390G (T463A), delCAT1408: (FRAMESHIFT) M20-G17 : M_NT = 7, M_NS = 4 : A69T (SYNONYMOUS), A408G (SYNONYMOUS), T1042A (L347I), A1260G (SYNONYMOUS), A1322G (K440R), A1390G (T463A), delCAT1408: (FRAMESHIFT) M20-G18 : M_NT = 8, M_NS = 4 : A69T (SYNONYMOUS), T322C (SYNONYMOUS), A408G (SYNONYMOUS), T1042A (L347I), A1260G (SYNONYMOUS), A1322G (K440R), A1390G (T463A), delCAT1408: (FRAMESHIFT) M20-G19 : M_NT = 8, M_NS = 4 : A69T (SYNONYMOUS), T322C (SYNONYMOUS), A408G (SYNONYMOUS), T1042A (L347I), A1260G (SYNONYMOUS), A1322G (K440R), A1390G (T463A), delCAT1408: (FRAMESHIFT) M20-G21 (M20) : M_NT = 8, M_NS = 4 : A69T (SYNONYMOUS), T322C (SYNONYMOUS), A408G (SYNONYMOUS), T1042A (L347I), A1260G (SYNONYMOUS), A1322G (K440R), A1390G (T463A), delCAT1408: (FRAMESHIFT) M21-G3 : M_NT = 0, M_NS = 0 : no mutations M21-G7 : M_NT = 4, M_NS = 4 : T97A (F32I), A206G (D68G), A847C (K282Q), G1370T (G456V) M21-G9 : M_NT = 5, M_NS = 5 : T97A (F32I), A206G (D68G), A578G (N192S), A847C (K282Q), G1370T (G456V) M21-G11 : M_NT = 7, M_NS = 6 : T97A (F32I), A206G (D68G), T233A (F77Y), A578G (N192S), A847C (K282Q), G1370T (G456V), A1413G (SYNONYMOUS) M21-G13 : M_NT = 7, M_NS = 6 : T97A (F32I), A206G (D68G), T233A (F77Y), A578G (N192S), A847C (K282Q), G1370T (G456V), A1413G (SYNONYMOUS) M21-G17 : M_NT = 7, M_NS = 6 : T97A (F32I), A206G (D68G), T233A (F77Y), A578G (N192S), A847C (K282Q), G1370T (G456V), A1413G (SYNONYMOUS) M21-G18 : M_NT = 7, M_NS = 6 : T97A (F32I), A206G (D68G), T233A (F77Y), A578G (N192S), A847C (K282Q), G1370T (G456V), A1413G (SYNONYMOUS) M21-G20 : M_NT = 9, M_NS = 6 : T97A (F32I), A206G (D68G), T233A (F77Y), A578G (N192S), T816C (SYNONYMOUS), A847C (K282Q), T1041C (SYNONYMOUS), G1370T (G456V), A1413G (SYNONYMOUS) M21-G24 (M21) : M_NT = 9, M_NS = 6 : T97A (F32I), A206G (D68G), T233A (F77Y), A578G (N192S), T816C (SYNONYMOUS), A847C (K282Q), T1041C (SYNONYMOUS), G1370T (G456V), A1413G (SYNONYMOUS) M22-G1 : M_NT = 0, M_NS = 0 : no mutations M22-G2 : M_NT = 0, M_NS = 0 : no mutations M22-G3 : M_NT = 1, M_NS = 0 : T381A (SYNONYMOUS) M22-G5 : M_NT = 3, M_NS = 0 : T109C (SYNONYMOUS), T381A (SYNONYMOUS), A1359G (SYNONYMOUS) M22-G7 : M_NT = 3, M_NS = 0 : T109C (SYNONYMOUS), T381A (SYNONYMOUS), A1359G (SYNONYMOUS) M22-G9 : M_NT = 5, M_NS = 2 : T109C (SYNONYMOUS), T381A (SYNONYMOUS), G757A (E252K), A1322G (K440R), A1359G (SYNONYMOUS) M22-G10 : M_NT = 5, M_NS = 2 : T109C (SYNONYMOUS), T381A (SYNONYMOUS), G757A (E252K), A1322G (K440R), A1359G (SYNONYMOUS) M22-G11 : M_NT = 6, M_NS = 2 : T109C (SYNONYMOUS), T381A (SYNONYMOUS), T444C (SYNONYMOUS), G757A (E252K), A1322G (K440R), A1359G (SYNONYMOUS) M22-G14 : M_NT = 8, M_NS = 3 : T109C (SYNONYMOUS), T381A (SYNONYMOUS), T444C (SYNONYMOUS), G757A (E252K), A958T (N319Y), T990C (SYNONYMOUS), A1322G (K440R), A1359G (SYNONYMOUS) M22-G15 : M_NT = 9, M_NS = 3 : T109C (SYNONYMOUS), T381A (SYNONYMOUS), T444C (SYNONYMOUS), T597C (SYNONYMOUS), G757A (E252K), A958T (N319Y), T990C (SYNONYMOUS), A1322G (K440R), A1359G (SYNONYMOUS) M22-G18 : M_NT = 9, M_NS = 3 : T109C (SYNONYMOUS), T381A (SYNONYMOUS), T444C (SYNONYMOUS), T597C (SYNONYMOUS), G757A (E252K), A958T (N319Y), T990C (SYNONYMOUS), A1322G (K440R), A1359G (SYNONYMOUS) M22-G19 : M_NT = 9, M_NS = 3 : T109C (SYNONYMOUS), T381A (SYNONYMOUS), T444C (SYNONYMOUS), T597C (SYNONYMOUS), G757A (E252K), A958T (N319Y), T990C (SYNONYMOUS), A1322G (K440R), A1359G (SYNONYMOUS) M22-G20 : M_NT = 11, M_NS = 3 : T109C (SYNONYMOUS), T246C (SYNONYMOUS), T381A (SYNONYMOUS), T444C (SYNONYMOUS), T597C (SYNONYMOUS), G757A (E252K), A882G (SYNONYMOUS), A958T (N319Y), T990C (SYNONYMOUS), A1322G (K440R), A1359G (SYNONYMOUS) M22-G24 : M_NT = 11, M_NS = 3 : T109C (SYNONYMOUS), T246C (SYNONYMOUS), T381A (SYNONYMOUS), T444C (SYNONYMOUS), T597C (SYNONYMOUS), G757A (E252K), A882G (SYNONYMOUS), A958T (N319Y), T990C (SYNONYMOUS), A1322G (K440R), A1359G (SYNONYMOUS) M22-G25 (M22) : M_NT = 12, M_NS = 3 : T6A (SYNONYMOUS), T109C (SYNONYMOUS), T246C (SYNONYMOUS), T381A (SYNONYMOUS), T444C (SYNONYMOUS), T597C (SYNONYMOUS), G757A (E252K), A882G (SYNONYMOUS), A958T (N319Y), T990C (SYNONYMOUS), A1322G (K440R), A1359G (SYNONYMOUS) M23-G1 : M_NT = 0, M_NS = 0 : no mutations M23-G2 : M_NT = 0, M_NS = 0 : no mutations M23-G3 : M_NT = 0, M_NS = 0 : no mutations M23-G6 : M_NT = 1, M_NS = 0 : G888A (SYNONYMOUS) M23-G7 : M_NT = 2, M_NS = 1 : G888A (SYNONYMOUS), T1146A (N381K) M23-G8 : M_NT = 2, M_NS = 1 : G888A (SYNONYMOUS), T1146A (N381K) M23-G9 : M_NT = 2, M_NS = 1 : G888A (SYNONYMOUS), T1146A (N381K) M23-G11 : M_NT = 3, M_NS = 2 : T406C (S135P), G888A (SYNONYMOUS), T1146A (N381K) M23-G14 : M_NT = 3, M_NS = 2 : T406C (S135P), G888A (SYNONYMOUS), T1146A (N381K) M23-G17 : M_NT = 5, M_NS = 2 : A312G (SYNONYMOUS), T406C (S135P), G888A (SYNONYMOUS), T1146A (N381K), T1374C (SYNONYMOUS) M23-G19 : M_NT = 5, M_NS = 2 : A312G (SYNONYMOUS), T406C (S135P), G888A (SYNONYMOUS), T1146A (N381K), T1374C (SYNONYMOUS) M23-G20 : M_NT = 6, M_NS = 3 : A312G (SYNONYMOUS), T406C (S135P), A560T (N186I), G888A (SYNONYMOUS), T1146A (N381K), T1374C (SYNONYMOUS) M23-G22 : M_NT = 7, M_NS = 3 : A312G (SYNONYMOUS), T406C (S135P), A560T (N186I), T741C (SYNONYMOUS), G888A (SYNONYMOUS), T1146A (N381K), T1374C (SYNONYMOUS) M23-G23 : M_NT = 7, M_NS = 3 : A312G (SYNONYMOUS), T406C (S135P), A560T (N186I), T741C (SYNONYMOUS), G888A (SYNONYMOUS), T1146A (N381K), T1374C (SYNONYMOUS) M23-G25 (M23) : M_NT = 7, M_NS = 3 : A312G (SYNONYMOUS), T406C (S135P), A560T (N186I), T741C (SYNONYMOUS), G888A (SYNONYMOUS), T1146A (N381K), T1374C (SYNONYMOUS) M24-G5 : M_NT = 1, M_NS = 1 : G443A (R147H) M24-G6 : M_NT = 1, M_NS = 1 : G443A (R147H) M24-G7 : M_NT = 1, M_NS = 1 : G443A (R147H) M24-G8 : M_NT = 1, M_NS = 1 : G443A (R147H) M24-G10 : M_NT = 3, M_NS = 3 : G443A (R147H), A790G (I263V), A1328T (E442V) M24-G11 : M_NT = 3, M_NS = 3 : G443A (R147H), A790G (I263V), A1328T (E442V) M24-G12 : M_NT = 3, M_NS = 3 : G443A (R147H), A790G (I263V), A1328T (E442V) M24-G13 : M_NT = 3, M_NS = 3 : G443A (R147H), A790G (I263V), A1328T (E442V) M24-G15 : M_NT = 4, M_NS = 4 : G443A (R147H), A790G (I263V), T1264C (F421L), A1328T (E442V) M24-G23 (M24) : M_NT = 4, M_NS = 4 : G443A (R147H), A790G (I263V), T1264C (F421L), A1328T (E442V)