Wiesel et al. 10.1073/pnas.0708974105.

Supporting Information

Files in this Data Supplement:

SI Figure 5
SI Table 2
SI Table 3
SI Table 4
SI Figure 6
SI Materials




Fig. 5. Evolutionary conserved residues mutated in C. elegans. (A) SDS/12% PAGE of purified wildtype and several mutant C. elegans lamin proteins. The missense mutations are indicated above the lanes. (B) Amino acid sequence alignment of C. elegans lamin and human lamin A. Residues that were mutated are marked in bold and the amino acid substitution is indicated below. Residues affecting lamin assembly or localization are highlighted.





Fig. 6. Immunostaining of Ce-emerin in wildtype C. elegans embryos (N2), or in embryos derived from transgenic strains expressing wildtype or mutant GFP::Ce-lamin. Scale bar, 10 mm.





Table 2. Filament assembly of the R64P protein was stopped after 5 sec, 15 sec, 5 min or overnight (ON) as described in the legend of Fig. 2

Filament length, nm

Time of assembly

5 sec, %

15 sec, %

5 min, %

ON, %

25-75

30

22

28

11

75-125

57

59

47

45

125-175

6

13

16

16

175-225

4

3

5

6

225-275

2

2

2

4

275-325

0

0

2

5

325-375

0

2

0

3

375-425

0

0

0

3

425-475

0

0

0

3

475-525

0

0

0

2

525-575

0

0

0

1

575-625

0

0

0

1

625-675

0

0

0

0

675-725

0

0

0

1

725-775

0

0

0

0

775-825

0

0

0

1

Length of negatively stained fibrils was measured by the analySIS software.





Table 3. WT and mutant GFP::Ce-lamin expression pattern in C. elegans at the young adult stage

Mutation position in C. elegans

Position in lamin A

Disease

No. of strains1

Promoter

In vivo

GFP expression pattern in embryos and young adult C. elegans

Embryos (<60 cells)

Embryos (>60 cells)

Pharynx cells

Intestine cells

Gonad cells

Mid-body cells

Hypodermis cells

Tail cells

WT

 

None

3

Lmn-1p

++

++

++

++

++

++

++

++

5

BAFp

++

++

++

++

++

++

++

++

3

HSp

--

++

+/-

++

+/-

+/-

+/-

+/-

Y59C

Y45C

EDMD

3

BAFp

++

++

+/-

++

++

+/-

--

+/-

2

HSp

+/-

++

+/-

++

--

+/-

+/-

+/-

R64P

R50P

EDMD

4

HSp*

--

++

++

++

--

+

++

++

Q159K

E145K

HGPS

1

BAFp

+/-

+/-

++

+/-

--

--

+/-

--

3

HSp

--

--

++

++

--

+

+

+/-

T164P

T150P

EDMD

2

BAFp

+/-

++

+/-

+/-

+/-

+/-

+/-

+/-

3

HSp

+/-

+/-

++

++

--

+

++

+

D217K

E203K

DCM

2

BAFp

+/-

+/-

+/-

+/-

+/-

+/-

+

+/-

2

HSp

+/-

+/-

+

++

+/-

+

+

+

N209K

N195K

DCM

2

BAFp

+

+/-

+

+/-

+/-

+/-

+

+/-

L229P

L215P

DCM

2

BAFp

++

++

++

++

++

++

++

++

R460W

R453W

EDMD

3

HSp*

--

++

++

++

+

++

++

++

R460C

R453C

None

3

BAFp

++

++

++

++

++

++

++

++

G472D

G465D

FPLD

3

BAFp

++

++

++

++

++

++

++

++

L535P

L530P

EDMD

3

BAFp

+

++

+/-

++

+/-

+/-

+/-

+/-

++: GFP expression in essentially all cells.

+: GFP expression in a high number of cells.

+/-: GFP expression in some cells.

--: No GFP expression.

1

: Number of independent strains.

*: No viable strains obtained with BAF promoter.

One of the L215P mutant strains has a weaker expression.





Table 4. Cellular localization and nuclear morphology of WT and mutants GFP::Ce-lamin in vivo

Position in C. elegans

No. of strains*

Promoter

GFP::Ce-lamin cellular localization and nuclear morphology phenotypes

WT

3

Lmn-1p

WT localization

5

BAFp

3

HSp

Y59C

3

BAFp

Nucleoplasmic in all cells that express the protein except for distal gonad cells.

2

HSp

Nucleoplasmic in all cells that express the protein.

R64P

4

HSp

Nucleoplasmic in all cells that express the protein.

Q159K

1

BAFp

WT localization. Low cytoplasmic background in most cells that express the protein. Aggregation and nuclear lobulation in few cells of late embryos, hypodermis and muscle cells.

3

HSp

WT localization in most cells. Some midbody nuclei contain few aggregates and are lobulated.

T164P

2

BAFp

WT localization in embryos with less than 100 cells. Older embryos have nuclear periphery aggregates and nuclei have abnormal nuclear shape. Hypodermis nuclei have WT localization, while pharynx and tail nuclei have few big aggregates and have also abnormal nuclear shape including lobulation.

3

HSp

Small aggregation at the nuclear interior and nuclei are lobulated.

N209K

2

BAFp

WT localization with a weak cytoplasmic background especially in young embryos. After the 1-fold stage, few nuclei showed non-homogeneous GFP localization and GFP::Ce-lamin nuclear aggregation.

D217K

2

BAFp

WT localization with a weak cytoplasmic background.

L229P

2

BAFp

WT localization.

R460W

3

HSp

Loss of nuclear periphery localization with many small intranuclear foci.

R460C

3

BAFp

WT localization

G472D

3

BAFp

WT localization with intestine and embryo nuclear envelopes not smooth as WT.

L535P

3

BAFp

Intranuclear 3-6 big aggregates that appeared in intestinal adult cells. Abnormal nuclear morphology and aggregates in old embryos. WT localization in all other cells.

Two D217K GFP::Ce-lamin mutant strains under heat shock promoter showed also a nucleoplasmic localization with some aggregates and some nuclei had abnormal morphology.

*Number of independent strains used for the analysis.





SI Materials

Primers used for mutagenesis.

Y59C fwd: 5'-cagtcgtcttgccacttgcatcgacaaagttcgtc-3'

Y59C Rev: 5'-gacgaactttgtcgatgcaagtggcaagacgactg-3'

R64P Fwd: 5'-gccacttacatcgacaaagttccgcaattggagcaagag-3' (primer for cDNA)

R64P Rev: 5'-ctcttgctccaattgcggaactttgtcgatgtaagtggc-3'

R64P Fwd: 5'-cacttttcagaaagttccgcaattggagcaagag-3' (primer for genomic DNA)

R64P Rev: 5'-ctcttgctccaattgcggaactttctgaaaagtg-3'

R103C Fwd: 5'-aggctcgtctctgtcgtgccctcgattcg-3'

R103C Rev: 5'-cgaatcgagggcacgacagagacgagcct-3'

Q159K Fwd: 5'-ctattgctgatcaaagtaaagcaaaacagaagacg-3'

Q159K Rev: 5'-cgtcttctgttttgctttactttgatcagcaatag-3'

T164P Fwd: 5'-caagcaaaacagaagccgttgcaggcacgcaac-3'

T164P Rev: 5'-gttgcgtgcctgcaacggcttctgttttgcttg-3'

N209K Fwd: 5'-gaacagccgccaacaaaaaaatcaaggctctg-3'

N209K Rev: 5'- cagagccttgatttttttgttggcggctgttc-3'

D217K Fwd: 5'-caaggctctggaagaaaagctcgcttttgctcttc-3'

D217K Rev: 5'-gaagagcaaaagcgagcttttcttccagagccttg-3'

Y281C Fwd: 5'-cagctttcgaagatgcctgcaaaaacaagctcaatgc-3'

Y281C Rev: 5'-gcattgagcttgtttttgcaggcatcttcgaaagctg-3'

E358K Fwd: 5'-cgagcgcatgatgagcaagttccacgatcttcttg-3'

E358K Rev: 5'-caagaagatcgtggaacttgctcatcatgcgctcg-3'

E381A Fwd: 5'-ctaccaagctctccttgcgggtgaggaggagcgtc-3'

E381A Rev: 5'-gacgctcctcctcacccgcaaggagagcttggtag-3'

R460W Fwd: 5'-gaaggaaagtgggtctgggttgcaaacaactc-3'

R460W Rev: 5'-gagttgtttgcaacccagacccactttccttc-3'

R460C Fwd: 5'-gaaggaaagtgggtctgtgttgcaaacaactc-3'

R460C Rev: 5'-gagttgtttgcaacacagacccactttccttc-3'

G472D Fwd: 5'-gaagaacaatccatcgatggatacaagttggtggt-3'

G472D Rev: 5'-accaccaacttgtatccatcgatggattgttcttc-3'

L535P Fwd: 5'-acccatcagctcgtcctgaggatagtgaagga-3'

L535P Rev: 5'-tccttcactatcctcaggacgagctgatgggt-3'

Other Primers

.

lmn-1

gene encoding the C. elegans lamin (Ce-lamin) was PCR amplified with the following primers: Lmn-T Fwd: 5'- gatcaggcctatgtcatctcgtaaaggtactcg-3'

Lmn-T Rev: 5'-tcaggcggccgccaattacatgctggaacaacgatcggc-3'.

The GFP fragment was PCR amplified from pJKL380 (26) with the following primers: GFP Fwd 5'-agtcgagctcatgagtaaaggagaagaacttttcactgg-3'

GFP Rev 3'-actgccgcggttaactttgtatagttcatccatgaa-3'.

The baf-1 promoter was PCR amplified from genomic DNA with the following primers:

BAFp Fwd: 5'-gatcagatctgtcagcgacatacgaatgaatcg-3'

BAFp Rev: 5'-gatcgagctcggtttctgaaacacaaaataattac-3'.

The heat shock promoter was PCR amplified from pDP49.78 (kindly provided by Andy Fire) with the following primers:

HSp Fwd: 5'- gcctgcaggtcgacagatctagag -3'

HSp Rev: 5'- tatgagctcgattatagtttgaagatttc -3'

The heat shock conditions for the strains containing this promoter were 10 min at 34°C followed by 90 min at 20°C before visualization.