Nelson and Grishin 1010.1073/pnas.0705707105

Supporting Information

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SI Figure 5
SI Text
SI Figure 6
SI Figure 7




SI Figure 5

Fig. 5. Loop closure entropy in various ensemble diagrams. (a) A diagram with three folded segments, , connects to close a partially folded segment, , into a loop. The entropy cost is estimated as a fraction of the entropy cost to close a fully unfolded loop with effective length l. Similar estimates are used to describe nested (b) and coupled (c) loops in SI Text.





SI Text



SI Figure 6

Fig. 6. Fraction of diagrams with n unfolded loops, Pn(q), near the melting point. P4(q) is the fraction of diagrams in SI Fig. 5c.





SI Figure 7

Fig. 7. Comparison of the free energy profile neglecting loops (black), and neglecting the extension term r2/la2 (indigo) to the model described in the text (blue).