Nelson and Grishin 1010.1073/pnas.0705707105 |
Fig. 5. Loop closure entropy in various ensemble diagrams. (a) A diagram with three folded segments, , connects to close a partially folded segment, , into a loop. The entropy cost is estimated as a fraction of the entropy cost to close a fully unfolded loop with effective length l. Similar estimates are used to describe nested (b) and coupled (c) loops in SI Text.
Fig. 6. Fraction of diagrams with n unfolded loops, Pn(q), near the melting point. P4(q) is the fraction of diagrams in SI Fig. 5c.
Fig. 7. Comparison of the free energy profile neglecting loops (black), and neglecting the extension term r2/la2 (indigo) to the model described in the text (blue).