Progenitor/stem cells give rise to liver cancer due to aberrant TGF-β and IL-6 signaling

Tang et al. 10.1073/pnas.0705395105.

Supporting Information

Files in this Data Supplement:

SI Figure 5
SI Figure 6
SI Figure 7
SI Figure 8
SI Figure 9
SI Table 1
SI Figure 10
SI Figure 11
SI Figure 12
SI Figure 13
SI Figure 14
SI Text




SI Figure 5

Fig. 5. Identification of Liver Progenitor/Stem Cells in Posttransplant Human Liver Tissue. (A) Hepatic lobule is roughly hexagonal in shape. Portal tract (PT) defines the angles of the lobule margin and central vein (CV) defines the center of each lobule. The lobules are bound by thin septa of collagenous supporting tissue (C). Typical portal tract containing three main structures; portal vein, hepatic artery, and bile duct. The largest structure of portal tract is a terminal branch of the hepatic portal vein (PV). The smaller diameter thick-walled vessel is a terminal branch of the hepatic artery (HA). Bile collecting ducts drain bile into bile duct (BD). (B) Cartoon representation of hepatic lobule and its components. (C-J) Immunohistochemical labeling of posttransplant human liver tissues taken from living donor liver transplant recipient at 4 weeks after transplantation. The tissue is labeled for the presence of ELF (C, E), Oct4 (D, F), TBRII (G, I), and Nanog (H, J). Serial sections are taken consecutively to enable identical localization. Equivalent areas are marked by red-dotted line, and green arrows point to the positive labeling. (Scale bar is in mm.)





SI Figure 6

Fig. 6. Identification of Liver Progenitor/Stem Cells in Human Liver Tissue. Immunohistochemical labeling of posttransplant human liver tissues taken from living donor liver transplant recipient at 4 weeks after transplantation. The tissue is labeled for the presence of Oct4 (A, B), CK19 (C, D), and Albumin (Alb) (E, F). Sections are taken consecutively to enable identical localization. Equivalent areas are marked by red-dotted line, and arrows point to the positive labeling. Portal vein (PV); Bile duct (BD). (Scale bar is in mm.)





SI Figure 7

Fig. 7. Elf+/- Mutant Mice Develop HCCs. Macroscopic analysis of HCC development in elf+/- mice (A) compared to normal wild-type liver (B). H&E-stained sections of normal wild-type liver (C, D) and HCC (E-H) obtained from elf+/- mice showing poorly differentiated HCC with nuclear changes and variability in the nuclear morphology (E-G; arrows) and abnormal mitosis (H; arrow). (Scale bar is in mm.)





SI Figure 8

Fig. 8. Identification of Liver Progenitor/Stem Cells in Post-transplant Human HCC Tissues. Immunohistochemical labeling of normal human liver (A, B, F, and G) and HCC tissues (C-E and H-M). The loss of ELF is evident when comparing the immunohistochemical labeling of normal (A, F) and HCC samples (C, H). The loss of TBRII is also evident when comparing the labeling of normal (B, G) and HCC samples (D, I). Strikingly, there are small pockets of Oct4 positively stained cells, three to four cells, present in the midst of transformed hepatocellular cells (E, J-M; arrows). These Oct4 positive cells are stained negatively for ELF and TBRII (H, I, area marked by blue dotted line). (Scale is in mm.)





SI Figure 9

Fig. 9. Immunohistochemical Analysis of ITIH4 and Stat3 Expression in Mouse Liver and HCC Tissues. Immunohistochemical detection shows increased expression of ITIH4 in elf+/- liver and elf+/- HCC tissues (B and C; arrows) compared to normal wild-type liver tissues (A). Immunohistochemical labeling of Stat3 shows increased expression of Stat3 in elf+/- liver and HCC tissues (E and F; arrows) compared to normal wild-type (D) and itih4-/- (G) liver tissues. (Scale bar is in mm.)





SI Figure 10

Fig. 10. Immunohistochemical Analysis of Phosphorylated-Stat3 Expression in Mouse Liver and HCC Tissues. Immunohistochemical detection shows increased expression of phosphorylated-Stat3 in elf+/- HCC tissues (B) compared to normal wild-type, itih4-/-, and elf+/-/itih4-/- liver tissues (A, C, and D). Immunoblot analysis using the antibodies specific to IL-6, Stat3 or phosphorylated-Stat3 shows decreased IL-6 and phosphorylated-Stat3 in mouse itih4-/- and elf+/-/itih4-/- normal liver tissue lysates (E). (Scale bar is in mm.)





SI Figure 11

Fig. 11. Immunohistochemical Analysis of ITIH4 Expression in Human Normal Liver and HCC Tissues. Immunohistochemical detection shows increased expression of ITIH4 in human HCC tissues (C and D; arrows) compared to normal liver tissues (A and B, arrows). (Scale bar is in mm.)





SI Figure 12

Fig. 12. Increase of Stat3 and Phosphorylated-Stat3 in Human HCC Cell Line SNU-398. Human HCC cell line SNU-398 has been shown to have near complete loss of ELF expression compared to SNU-182 and SNU-475. Western blot analysis shows increased expression of Stat3 and phosphorylated-Stat3 in SNU-398 compared to the other two cell lines. Actin is used for loading control.





SI Figure 13

Fig. 13. Cell Proliferation and Apoptosis in Wild-Type, Itih4-/-, Elf+/-/itih4-/- and in Elf+/- Liver Tissues. Immunohistochemical detection of mitotic cells by labeling with a mitotic marker, p-Histone H3 (Ser-10) in normal wild-type (A), itih4-/- (B), elf+/-/itih4-/- (C), and elf+/- (D) mouse liver tissues. Identification of apoptotic cells in normal wild-type (E), itih4-/- (F), elf+/-/itih4-/- (G), and elf+/- (H) mouse liver tissues, using anti-active Caspase-3 antibody, an apoptotic marker. Arrows in A, C, and D indicate mitotic cells; arrows in E and G point to apoptotic cells. (Scale bar is in mm.)





SI Figure 14

Fig. 14. Schematic Diagram to Show TGF-b/ELF and IL-6/Stat3/ITIH4 Signaling in Hepatic Stem Cell Renewal and Differentiation.





Table 1. Microarray results showing expression of genes involved in Wnt and IL-6/Stat3 signaling pathways in elf+/-, itih4-/- and elf+/-/itih4-/- mouse liver tissues compared to wild-type liver tissues

 

Elf+/- vs. WT

Itih4-/- vs. WT

Elf+/-/Itih4-/- vs. WT

Gen Bank acc. no.

Gene symbol

Descrip-tion

Fold change

P value

Fold change

P value

Fold change

P value

NM_005430

WNT1

Wingless-type MMTV integration site family, member 1; WNT1

-1.067

0.698

-1.061

0.737

1.103

0.928

NM_003391

WNT2

Wingless-type MMTV integration site family member 2; WNT2

-1.286

0.856

1.381

0.782

1.440

0.704

NM_030753

WNT3

Wingless-type MMTV integration site family, member 3; WNT3

-1.017

0.966

1.361

0.461

1.154

0.776

NM_033131

WNT3A

Wingless-type MMTV integration site family, member 3A; WNT3A

3.161

0.000

-1.362

0.015

-1.463

0.003

NM_030761

WNT4

Wingless-type MMTV integration site family, member 4; WNT4

-1.847

0.372

-1.022

0.963

-1.103

0.618

NM_003392

WNT5A

Wingless-type MMTV integration site family, member 5A; WNT5A

-2.258

0.128

-1.175

0.700

-1.176

0.673

NM_030775

WNT5B

Wingless-type MMTV integration site family, member 5B; WNT5B

1.204

0.818

-1.366

0.816

1.002

0.997

NM_006522

WNT6

Wingless-type MMTV integration site family, member 6; WNT6

1.552

0.000

-1.205

0.104

1.887

0.000

AK095242

CTNNB1

Catenin (cadherin associated protein), beta 1, 88kDa; Ctnnb1

1.000

1.000

2.614

0.627

-1.455

0.789

NM_001904

CTNNB1

Catenin (cadherin-associated protein), beta 1, 88kDa; CTNNB1

-1.067

0.567

1.032

0.781

-1.332

0.013

NM_012275

IL1F5

Interleukin 1 family, member 5 (delta); IL1F5

-1.679

0.504

1.238

0.746

1.411

0.515

NM_014440

IL1F6

Interleukin 1 family, member 6 (epsilon); IL1F6

-1.312

0.021

-7.335

0.000

-4.794

0.000

NM_000586

IL2

Interleukin 2; IL2

-1.098

0.958

1.000

1.000

1.323

0.765

NM_000588

IL3

Interleukin 3 (colony-stimulating factor, multiple); IL3

1.249

0.697

-1.262

0.703

1.236

0.778

NM_000589

IL4

Interleukin 4; IL4

1.000

1.000

1.000

1.000

-1.376

0.825

NM_000879

IL5

Interleukin 5 (colony-stimulating factor, eosinophil); IL5

-1.579

0.669

1.381

0.726

-1.522

0.495

BC027978

IL-6

INTERLEUKIN 6 (INTERFERON, BETA 2)

1.118

0.331

-1.305

0.022

-1.522

0.000

NM_000600

IL-6

Interleukin 6 (interferon, beta 2); IL-6

-1.042

0.933

-1.058

0.905

1.123

0.688

NM_000880

IL7

Interleukin 7; IL7

-1.377

0.607

1.000

1.000

1.000

1.000

NM_000584

IL8

Interleukin 8; IL8

1.000

1.000

1.000

1.000

1.000

1.000

NM_007315

STAT1

Signal transducer and activator of transcription 1, 91kDa; STAT1

1.000

1.000

1.000

1.000

1.000

1.000

NM_005419

STAT2

Signal transducer and activator of transcription 2, 113kDa; STAT2

-1.006

0.961

1.064

0.636

-1.104

0.440

AK024535

STAT3

Signal transducer and activator of transcription 3 (acute-phase response factor); STAT3

-1.461

0.568

1.087

0.865

1.502

0.287

NM_003151

STAT4

Signal transducer and activator of transcription 4; STAT4

-1.005

0.997

-1.131

0.919

1.000

1.000

NM_003152

STAT5A

Signal transducer and activator of transcription 5A; STAT5A

1.379

0.811

1.000

1.000

1.000

1.000

NM_012448

STAT5B

Signal transducer and activator of transcription 5B; STAT5B

-1.377

0.328

-1.039

0.906

-1.264

0.581

NM_003153

STAT6

Signal transducer and activator of transcription 6, interleukin-4 induced; STAT6

-1.006

0.989

1.089

0.902

1.211

0.632

NM_002227

JAK1

Janus kinase 1 (a protein tyrosine kinase); JAK1

1.532

0.848

1.000

1.000

1.162

0.911

NM_004972

JAK2

Janus kinase 2 (a protein tyrosine kinase); JAK2

1.000

1.000

1.000

1.000

1.000

1.000

NM_000215

JAK3

Janus kinase 3 (a protein tyrosine kinase, leukocyte); JAK3

1.397

0.005

-1.227

0.084

-1.107

0.380

Wnt3a expression is increased in elf+/- liver tissue while it is decreased in itih4-/- and elf+/-/itih4-/- mouse liver tissues compared with wild type liver tissues. IL-6 expression is also suppressed in itih4-/- and elf+/-/itih4-/- mouse liver tissues compared with wild-type liver tissues.





SI Text

Experimental Procedures

Construction of the targeting vector and generation of mice carrying mutations. Targeting Vector: Recombinant phage containing genomic DNA of the itih4 locus was isolated from a 129/SvEv mouse library by using PK7R, a piece of itih4 cDNA, as a probe. The finished construct, p-itih4Neo, is shown in Fig. 3C. This targeting strategy deletes a 1.8-kb SmaI-ClaI fragment that contains the second and third exons of the itih4 gene. Homologous Recombination in ES Cells and Generation of Germline Chimeras: TC1 ES cells were transfected with NotI digested p-itih4Neo, and selected with G418 and FIAU. ES cell clones that were resistant to both G418 and FIAU were selected and analyzed by Southern blotting for homologous recombination events within the itih4 locus (Fig. 3D). ES cells heterozygous for the targeted mutation were microinjected into C57BL/6 blastocysts to obtain germline transmission. The injected blastocysts were implanted into the uteri of pseudopregnant Swiss Webster (Taconic, NY) foster mothers and allowed to develop to term. Male chimeras (identified by the presence of agouti coat color) were crossed with C57B6 and NIH Black Swiss females (Taconic, NY). Germline transmission was confirmed by agouti coat color in the F1 animals, and all agouti offspring were tested for the presence of the mutated itih4 allele by Southern blot analysis using the same conditions for the detection of the homologous recombination event in the ES cells.

Genotype analysis. Genotypes were determined by Southern blotting or PCR. For PCR analysis, the wild-type itih4 allele was detected using primer 1 (5' CTCATACTAGGCAGATCTC 3') and primer 2 (5' GTAGCTCTACTTGGAAGGTC 3'). Primer 1 is located 5' to the deletion and primer 2 is located within the deletion. This primer pair amplifies a fragment of 481 bp from wild-type and itih4 heterozygous, but not from itih4-/- mutant mice. DNA was also amplified using primer 1 and primer 3, which is located in the Neo locus (5' CAGCTCATTCCTCCCACTCATGAT 3') to detect the mutant itih4 allele. In this case, a 620-bp fragment was detected in mice heterozygous or homozygous for the mutant itih4 allele, while no signal was detected in wild-type mice.

Confocal laser-scanning immunofluorescence microscopy. Colocalization studies were performed with anti-ELF and anti-Stat3, and anti-Oct4 using human regenerating liver and HCC tissues. Normal wild-type, elf+/-, itih4-/-, and elf+/-/itih4-/- mutant livers and HCC tissues were also used for the confocal microscopy. Peptide specific monoclonal mouse and rabbit polyclonal primary antibodies were visualized with Tetramethyl rhodamine isothiocyanate (TRITC)-conjugated goat anti-rabbit IgG or Fluorescein isothiocyanate (FITC)-conjugated goat anti-mouse IgG. The samples were analyzed with a Bio-Rad MRC-600 confocal microscope (Bio-Rad, Cambridge, MA), with an ILT model 5470K laser (Ion Laser Technology, Salt Lake City, UT) as the source for the crypton-argon ion laser beam. FITC-stained samples were visualized by excitation at 488 nm and with a 505- to 540-bandpass emission filter, and Rhodamine-stained samples were visualized by excitation at 568 nm with a 598- to 621-bandpass emission filter using a 60x (numerical aperture 1.3) objective and 20x objective. Digital images were analyzed using Metamorph (Universal Imaging) and figures were prepared using Adobe Photoshop.

Generation of mouse embryo-derived fibroblasts. Mouse embryo-derived fibroblasts (MEFs) harboring the null allele elf and itih4 as well as wild-type were derived as described (1). Briefly, embryos E14.5 were triturated in 0.25% trypsin/1 mM EDTA and genotyped. The lines were propagated in Dulbecco's modified Eagle's medium supplemented with 10% FBS, 100 units/ml penicillin, and 50 mg/ml streptomycin to establish fibroblasts that were cultured over several passages to obtain enough cells to perform the experiments. The fibroblasts used for the experiments were at passage 3-5. Wild-type and itih4-/- fibroblast lines were used in experiments, and the results obtained were also independent of passage number. Representative data are shown.

Immunoblot assay. For assaying endogenous TBRII, ELF, ITIH4, IL-6, Stat3, pStat3, protein lysates of human HCC cells (SNU-182 (CRL-2235), SNU-398 (CRL-2233), and SNU-449 (CRL-2234) ATCC, VA), MEFs, and normal wild-type, elf+/-, itih4-/-, and elf+/-/itih4-/- mutant liver and HCC tissues were immunoblotted with the indicated anti-peptide or anti-phospho-specific antibodies (Santa Cruz Biotechnology, CA; Invitrogen, CA, and Abcam, MA). The loading control was performed under the same conditions using mouse monoclonal anti-Actin (Sigma, MO). MEFs cultured in the presence or absence of IL-6 (5 ng/ml, Sigma, MO) for 24 h were washed with PBS and lysed (150 mM NaCl, 50 mM Tris, 1% Nonidet P-40, and complete mini protease inhibitors (Roche Molecular Biochemicals)). 50-100 mg of total protein in 1x Lamaelli buffer was heated to 95° for 10 min and then loaded onto a PAGE GEL for Western blotting.

Histological analysis and antibody staining. Mice exhibiting overt pathological signs were killed and underwent autopsy. Liver and HCC tissues were dissected, fixed with 4% paraformaldehyde, dehydrated, embedded in paraffin and sectioned at 6 mm. Sections were stained with hematoxylin and eosin (H&E), or subjected to immunohistochemical analysis with antibodies. Immunohistochemical staining was performed with primary antibodies against ELF, Oct4, ITIH4, Stat3, pStat3, pHistone H3 (Ser-10), and Caspase-3 (Santa Cruz Biotechnology, CA; Invitrogen, CA, Promega, OR, and Abcam, MA). Sections were then incubated with peroxidase-conjugated secondary antibodies (Jackson ImmunoResearch Laboratories, PA) of appropriate specificity and processed for immunostain using diaminobenzidine (Sigma, MO) and counterstaining was performed with modified Harris hematoxylin solution (Sigma, MO).

Detection of proliferating cells. Proliferating cells were labeled with BrdU labeling and detection kit (Invitrogen, CA). BrdU (1 ml/100 g body weight) was injected (i.v.) into 18.5 dpc pregnant mice, and 4 h later the fetal stomachs were fixed with 4% paraformaldehyde, embedded in paraffin, and sectioned at 6 mm. The proliferating cell was also identified by anti-pHistone H3 (Ser-10) mitotic marker labeling.

Detection of apoptotic cells. Apoptotic cells were detected by the TUNEL method with a MEB STAIN Apoptosis Kit Direct (MBL, 8445) as well as with anti-Caspase-3 antibody (Promega, OR). Tissues were then fixed and analyzed by using immunofluorescence microscopy.

Tumor cells and tissues. Elf+/- mice were intercrossed with itih4-/- mice to obtain elf+/-/itih4-/-mice. Liver and HCC tissues were collected and cultured as described (2). Two different elf+/-HCC cancer cell lines were tested in different experiments, and the results obtained were also independent of passage number. Representative data are shown. The diagnosis of paraffin mounted tissue biopsies from human HCC and normal liver were microscopically confirmed by pathologists and an indirect immunoperoxidase procedure was used for immunohistochemical localization of Oct4, TBRII and ELF protein as described above.

Microarray. Custom-designed 44K human 60-mer oligo microarrays (Agilent Technologies, CA) were used for the array experiments. Total RNA was extracted from mouse liver and HCC tissues and MEFs using RNeasy kit (Qiagen, CA). We used Agilent 2100 Bioanalyzer with a RNA 6000 Nano Chip kit for routine RNA qualification. cDNA synthesis from total RNA and fluorescent cRNA synthesis from the cDNA were prepared using Low RNA Input Linear Amp kit (Agilent Technologies, CA). The microarray slides were hybridized with the fluorescent cRNA, and scanned according to the manufacturer's protocol (Agilent Technologies, CA). The microarray data were analyzed by Feature Extraction and GeneSpring (Agilent Technologies, CA).

1. Tang Y, Katuri V, Dillner A, Mishra B, Deng CX, Mishra L (2003) Science 299:574-577.

2. Massague J, Chen YG (2000) Genes Dev 14:627-644.