#NEXUS

[File saved Sat Jun 30 17:01:31 2007]

BEGIN TAXA;
	DIMENSIONS NTAX = 91;
	TAXLABELS
		ATPIP1.1
		ATPIP1.2
		ATPIP1.3
		ATPIP1.4
		ATPIP1.5
		ZmPIP1.1
		ZmPIP1.2
		ZmPIP1.3
		ZmPIP1.4
		ZmPIP1.5
		ZmPIP1.6
		PpPIP1.2 
		PpPIP1.1
		PpPIP1.3 
		ATPIP2.1
		ATPIP2.2
		ATPIP2.3
		ATPIP2.4
		ATPIP2.5
		ATPIP2.6
		ATPIP2.7
		ATPIP2.8
		ZmPIP2.1
		ZmPIP2.2
		ZmPIP2.3
		ZmPIP2.4
		ZmPIP2.5
		ZmPIP2.6
		ZmPIP2.7
		PpPIP2.2 
		PpPIP2.3 
		PpPIP2.4 
		PpPIP2.1 
		PpPIP3.1 
		ATTIP1.1
		ATTIP1.2
		ATTIP1.3
		ATTIP2.1
		ATTIP2.2
		ATTIP2.3
		ATTIP3.1
		ATTIP3.2
		ATTIP4.1
		ATTIP5.1
		ZmTIP1.1
		ZmTIP1.2
		ZmTIP2.1
		ZmTIP2.2
		ZmTIP2.3
		ZmTIP3.1
		ZmTIP3.2
		ZmTIP4.1
		ZmTIP4.2
		ZmTIP4.3
		ZmTIP4.4
		ZmTIP5.1
		PpTIP6.3 
		PpTIP6.4 
		PpTIP6.2 
		PpTIP6.1 
		ATNIP1.1
		ATNIP1.2
		ATNIP2.1
		ATNIP3.1
		ATNIP4.1
		ATNIP4.2
		ATNIP5.1
		ATNIP6.1
		ATNIP7.1
		ZmNIP1.1
		ZmNIP2.1
		ZmNIP2.2
		ZmNIP2.3
		ZmNIP3.1
		PpNIP5.2 
		PpNIP5.3 
		PpNIP5.1 
		PpNIP3.1 
		PpNIP6.1 
		ATSIP1.2
		ATSIP1.1
		ATSIP2.1
		ZmSIP1.1
		ZmSIP1.2
		ZmSIP2.1
		PpSIP1.2 
		PpSIP1.1 
		PpGIP1.1
		PpHIP1.1 
		PpXIP1.2 
		PpXIP1.1 
		;
ENDBLOCK;


BEGIN TREES;
[!>Data file = 070514AllExcPartialNexus.nex>Bootstrap method with heuristic search:>  Number of bootstrap replicates = 1000>  Starting seed = 964936982>  Optimality criterion = parsimony>    Character-status summary:>      Of 618 total characters:>        All characters are of type 'unord'>        All characters have equal weight>        195 characters are constant>        76 variable characters are parsimony-uninformative>        Number of parsimony-informative characters = 347>    Gaps are treated as "missing">  Starting tree(s) obtained via stepwise addition>  Addition sequence: simple (reference taxon = ATPIP1.1)>  Number of trees held at each step during stepwise addition = 1>  Branch-swapping algorithm: tree-bisection-reconnection (TBR)>  Steepest descent option not in effect>  Initial 'MaxTrees' setting = 100>  Branches collapsed (creating polytomies) if maximum branch length is zero>  'MulTrees' option in effect>  Topological constraints not enforced>  Trees are unrooted>>   1000 bootstrap replicates completed>   Time used = 75:13:35.0]
	TRANSLATE
		1	ATPIP1.1,
		2	ATPIP1.2,
		3	ATPIP1.3,
		4	ATPIP1.4,
		5	ATPIP1.5,
		6	ZmPIP1.1,
		7	ZmPIP1.2,
		8	ZmPIP1.3,
		9	ZmPIP1.4,
		10	ZmPIP1.5,
		11	ZmPIP1.6,
		12	PpPIP1.2 ,
		13	PpPIP1.1,
		14	PpPIP1.3 ,
		15	ATPIP2.1,
		16	ATPIP2.2,
		17	ATPIP2.3,
		18	ATPIP2.4,
		19	ATPIP2.5,
		20	ATPIP2.6,
		21	ATPIP2.7,
		22	ATPIP2.8,
		23	ZmPIP2.1,
		24	ZmPIP2.2,
		25	ZmPIP2.3,
		26	ZmPIP2.4,
		27	ZmPIP2.5,
		28	ZmPIP2.6,
		29	ZmPIP2.7,
		30	PpPIP2.2 ,
		31	PpPIP2.3 ,
		32	PpPIP2.4 ,
		33	PpPIP2.1 ,
		34	PpPIP3.1 ,
		35	ATTIP1.1,
		36	ATTIP1.2,
		37	ATTIP1.3,
		38	ATTIP2.1,
		39	ATTIP2.2,
		40	ATTIP2.3,
		41	ATTIP3.1,
		42	ATTIP3.2,
		43	ATTIP4.1,
		44	ATTIP5.1,
		45	ZmTIP1.1,
		46	ZmTIP1.2,
		47	ZmTIP2.1,
		48	ZmTIP2.2,
		49	ZmTIP2.3,
		50	ZmTIP3.1,
		51	ZmTIP3.2,
		52	ZmTIP4.1,
		53	ZmTIP4.2,
		54	ZmTIP4.3,
		55	ZmTIP4.4,
		56	ZmTIP5.1,
		57	PpTIP6.3 ,
		58	PpTIP6.4 ,
		59	PpTIP6.2 ,
		60	PpTIP6.1 ,
		61	ATNIP1.1,
		62	ATNIP1.2,
		63	ATNIP2.1,
		64	ATNIP3.1,
		65	ATNIP4.1,
		66	ATNIP4.2,
		67	ATNIP5.1,
		68	ATNIP6.1,
		69	ATNIP7.1,
		70	ZmNIP1.1,
		71	ZmNIP2.1,
		72	ZmNIP2.2,
		73	ZmNIP2.3,
		74	ZmNIP3.1,
		75	PpNIP5.2 ,
		76	PpNIP5.3 ,
		77	PpNIP5.1 ,
		78	PpNIP3.1 ,
		79	PpNIP6.1 ,
		80	ATSIP1.2,
		81	ATSIP1.1,
		82	ATSIP2.1,
		83	ZmSIP1.1,
		84	ZmSIP1.2,
		85	ZmSIP2.1,
		86	PpSIP1.2 ,
		87	PpSIP1.1 ,
		88	PpGIP1.1,
		89	PpHIP1.1 ,
		90	PpXIP1.2 ,
		91	PpXIP1.1 
		;
	TREE * PAUP_1= (88,((89,(34,((((3,4,5,(1,2)),(11,(10,(6,(7,(8,9)))))),(14,(12,13))),(28,29,(18,(15,(16,17))),(19,20),(21,22),(23,24),(27,(25,26)),(32,(30,31,33))))),(((45,(35,36),(37,46)),(38,((39,40),(49,(47,48)))),((41,42),(50,51)),(43,(55,(54,(52,53)))),(44,56)),(57,58,(59,60)))),((((80,81),(86,87)),(83,84)),(82,85)),(90,91)),(69,79,(70,(64,(63,(61,62))),(65,66)),(78,(68,(67,74))),(71,(72,73)),(75,(76,77))));
ENDBLOCK;