#NEXUS
[!Alignment of:]
[Sequence             Start   End  Sequencetype]

['AtSCAR1'   (1  >   238)   PROTEIN]

['AtSCAR2'   (1  >   240)   PROTEIN]

['AtSCAR3'   (1  >   234)   PROTEIN]

['AtSCAR4'   (1  >   239)   PROTEIN]

['AtSCARL'   (1  >   169)   PROTEIN]

['MtSCAR1'   (1  >   212)   PROTEIN]

['OsSCAR2'   (1  >   240)   PROTEIN]

['OsSCAR3'   (1  >   237)   PROTEIN]

['OsSCAR4'   (1  >   234)   PROTEIN]

['PpSCAR1'   (1  >   237)   PROTEIN]

['PpSCAR2'   (1  >   237)   PROTEIN]

['PpSCAR3'   (1  >   236)   PROTEIN]

['PtSCAR1'   (1  >   176)   PROTEIN]

['PtSCAR2'   (1  >   234)   PROTEIN]

['OsSCAR1'   (1  >   241)   PROTEIN]

['PtSCAR3'   (1  >   240)   PROTEIN]



BEGIN TAXA;
	DIMENSIONS NTAX=16;
	TAXLABELS
		'AtSCAR1'
		'AtSCAR2'
		'AtSCAR3'
		'AtSCAR4'
		'AtSCARL'
		'MtSCAR1'
		'OsSCAR2'
		'OsSCAR3'
		'OsSCAR4'
		'PpSCAR1'
		'PpSCAR2'
		'PpSCAR3'
		'PtSCAR1'
		'PtSCAR2'
		'OsSCAR1'
		'PtSCAR3'
		;
ENDBLOCK;


BEGIN TREES;
	TRANSLATE

		1	'AtSCAR1',
		2	'AtSCAR2',
		3	'AtSCAR3',
		4	'AtSCAR4',
		5	'AtSCARL',
		6	'MtSCAR1',
		7	'OsSCAR2',
		8	'OsSCAR3',
		9	'OsSCAR4',
		10	'PpSCAR1',
		11	'PpSCAR2',
		12	'PpSCAR3',
		13	'PtSCAR1',
		14	'PtSCAR2',
		15	'OsSCAR1',
		16	'PtSCAR3'
		;

	UTREE * PHYLIP_1 =(9,(8,(((((1,3),((5,13),6)),15),(10,(11,12))),((((14,16),2),4),7))));
	ENDBLOCK;


BEGIN CHARACTER;
	DIMENSIONS NCHAR=264;
  format datatype=Protein interleave gap=- missing='.';
  matrix
[                    1                                                      60]
'AtSCAR1'  MPLVRLQVRNVYGLGQKELHTK--VDREDPKAILDDVAVSGLVGILRQLGDLTEFAAEIF
'AtSCAR2'  MPLTRYQSRNEYGLADPDLYQAA--DKDDPEALLEGVAMAGLVGILRQLGDLAEFAAEMF
'AtSCAR3'  MP------RNVYGMNQSEVYRN--VDREDPKAILNGVAVTGLVGVLRQLGDLAEFAAEIF
'AtSCAR4'  MALTRYQIRNEYGLADKELYQSA--DKEDPEALLEAASMAGLVGVLRQLGDLSEFAAEVF
'AtSCARL'  MPLVRFKIRNELSLGGPEIQRSASVEDEEPKAILGAVEVAGLIGILRQLGDLAEFSAEVF
'MtSCAR1'  ----------------------------DPKALLDGVAVAGLVGILRQLGDLADFAAEVF
'OsSCAR2'  M--IRYQIRNEYGLSDPELYAPG--EKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEIF
'OsSCAR3'  MPLSRHEVGNEYSLGGRELYRRA--NQHDPEAVLDGVAMAGLVGVLRQLGDLAEFAAQVF
'OsSCAR4'  MG------------------GRGRGNDDDGGVVV----VDGFVAILRQLGDLAQLAAEVF
'PpSCAR1'  MPLVRYEVRCEHSLANPELFRSA--SRDDPEGLLEGVAMAGLVGIIRQLGDLAEFAAEVF
'PpSCAR2'  MPLVRYEVRCEHSLANPELYRSA--ARDDPESLLEGVAMAGLVGIVRQLGDLAEFAAEIF
'PpSCAR3'  MPLVRYEVRCEHSLANPELYRSA--ARDDPESLLEGVAMAGLVGIVRQLGDLAEFAAEIF
'PtSCAR1'  ------------------------------------------------------------
'PtSCAR2'  MPLTRYQIRNEYSLADPELYKAA--DKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEIF
'OsSCAR1'  MPLVRFEVRNEVGLGDPDLYKK--GGEAEPKALLEGVAVAGLVGILRQLGDLAEFAADVF
'PtSCAR3'  MPLTRYQIRNEYSLADPELFKAA--DKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEIF

[                    61                                                      120]
'AtSCAR1'  HGIQEEVMITASRSNKLKMRLKQIEAKVPTI-------QKTVLAQTNHIHFAYTGG--LE
'AtSCAR2'  HDLHEEVMATASRSHGLMARVQQLEAEFPSI-------EKALLCQTDHSPFFSNKG--VE
'AtSCAR3'  HGIQEEVMATASRSNQLKIRLQHIEATVPPL-------EKAMLAQTTHIHFAYTGG--LE
'AtSCAR4'  HCLHEQLMTTAARGHGLAMRLQHLEADFPSV-------EIPILSQTDHSTFFYEPG--LE
'AtSCARL'  NGLQEEVTVTASRCQKLTSRVRRIESALSPL-------EKAVLSQTSHIHFAYTAG--SE
'MtSCAR1'  HGLQEQVTTTASRSHKLMVRVQNIEASLPPL-------EKAVLAQTSHIHFAYTAG--CE
'OsSCAR2'  HDLHEDVMATASRGHGLMLRLRQLE-EFPAV-------EKAIISQSDHSNYPHDDG--VE
'OsSCAR3'  HGLYDEVMTASARGHGLMLRVQQLEAELPLV-------EKDS-CHTDYLYVASNRG--IE
'OsSCAR4'  QGMHDQVMALSTRRRQLALRLNHLDHAAPPAVAAPQDSSSSFFCHKDYYLFVASNIGRVH
'PpSCAR1'  RDLHNELVTVGGRTHDLTVRVQSLEAELPAV-------ERALLSEPNQLRFAYTNG--AD
'PpSCAR2'  CGLHDELMTIGSRGHDLNMRVQQLEDELPAV-------ERALLSEPNQLRFAYTNG--SD
'PpSCAR3'  CGLHDELMTIGSRGHDLNMRVQQLEDELPVV-------ERALLSEPNQLRFAYTTG--AD
'PtSCAR1'  -------MSTASRSHKLMVRVQNIEVALPPL-------EKVVLSQTSHTHFAYTAG--SE
'PtSCAR2'  HGLHEEVMTTAARGHGLMARVQQLEAEFPSI-------EKAFLSQTNHSPFFSSSG--VD
'OsSCAR1'  HDLHEQVITTSARGRKVLTRVQNIEAALPSL-------EKAVKNQKSHIHFTYVPG--SD
'PtSCAR3'  HDLHEEVMTTAARGHGLMARVQQLEAEFPSI-------EKAFLSQTNHSPFFSSSG--AD

[                    121                                                      180]
'AtSCAR1'  WHPRIPNVQNHFMYDE--LPPFIMTPYEDCREPPRLHLLDKFDINGPGSCLKRYSDPTHF
'AtSCAR2'  WHPNLQLEQSVVTSGD--LPRCVMDSYEECRGPPRLFLLDKFDISGAGACLKRYTDPSFV
'AtSCAR3'  WHPRIPITQNHLIYDD--LPHIIMDPYEECRGPPRLHLLDKFDINGPGSCLKRYSDPTYF
'AtSCAR4'  WHSDLQTKEDLISPRN--LPRCIMDSYEECHGPPQLFLLDKFDVAGSGSCLKRYSDPSLL
'AtSCARL'  WHPRIRNGHSHFVQSD--LPLCVMESYEQCGDPPPLHLLDRFAVGGPGSCLRRYSDPTFF
'MtSCAR1'  WHPRIKTARNHFIYND--LPPFIMDSYEECRDPPRMHLLDKFDTGGPGSCFRRYSDPTFF
'OsSCAR2'  WHTNLQIDQNMITQGD--MPRFILDSYEECRGPPRLFTLDKFDVAGAGASLKRYSDPSFF
'OsSCAR3'  WHSNPRLESGVVTKGD--TPRFIMDSIKKCHGPPKLFMLDKYDIGGEGACLKRYTDPSFF
'OsSCAR4'  WRANLILKQGLVAGGNNSLPTIIFDRIHRCRGPPNLSLLDKYDADGEGACLKRYTNPSFF
'PpSCAR1'  WHVSIRSDQNHCTSGE--LPRFIRNFYEECRGPPRLFLLDKFDVAGAGACLKRYTDPS--
'PpSCAR2'  WHASIRSDQNHCTSGD--LPRFVRNYYEECRGPPQLFLLDKFDVSGVGACLKRFTDPR--
'PpSCAR3'  WHASIRSDQNHCTSGD--LPRFVRNYYEDCRGPPQLFLLDKFDVSGVGACLKRYTDPP--
'PtSCAR1'  WHPCIQNEQNHFIYND--LPRFIMDSYEECRDPPRLHLLDKFDTGGPGSCLKRYSDPTFF
'PtSCAR2'  CHPNLQMEQNLIARGD--LPRFVMDSYEECRGPPQLFLLDKFDVAGAGACLMRYTDPSFF
'OsSCAR1'  WHAQLKDEQNHLLSSD--LPRFMMDSYEECRDPPRLYLLDKFDNAGAGACSRRHSDPSYF
'PtSCAR3'  WHPNLQMEQNLITRGG--LPHFVMDSYEECRGPPQLFLLDKFDVAGAGACLKRYTDPSFF

[                    181                                                      240]
'AtSCAR1'  K-T-NET----EAGDFLHQIRTKQFNLRRVVRTKTSSSETT-----MNTNISVILEKANS
'AtSCAR2'  RPI-KSKQ--DDKDSLLAQIRNKSVNLKPAVTT-RPSIQT--GPRT-DLRVAAILEKANT
'AtSCAR3'  RNA-KET----ETGDFLQQIRTQQFNLRPVVMTTTSSATATTDP-IINTKISAILEKANS
'AtSCAR4'  --V-GARV--DENDSLLEIIRSKSFNLRPADASGRPNFQ-VAVPKT-NLKVAAILEKANT
'AtSCARL'  ------------------------------------------------------------
'MtSCAR1'  KRV-SAD-S--EKEDFLYQIRTKSFNLRPTV--TGKSN-VTTGP-TTNVKVTAILEKANA
'OsSCAR2'  K---KSKP--NERNLLLEQIRNKTFNLKPVSSAKQPTIRTPPRASTRNLKVAAIIEKANA
'OsSCAR3'  KVQ-PSIKLSDENNTILEQIKNKSFNLKPVLA-KRPNMMGA---PRTNLQVVAILERANA
'OsSCAR4'  TLIYPSRRLSGEIRKLPEQINAKSCDLKPAL--ERGSNVTVDHRNT---KVATILQRVDH
'PpSCAR1'  ----KLLQ--SDERFIMQDQTTKYFDLRRTESTEK---KVPLIRPSANINVAAILEKANA
'PpSCAR2'  ----PPPP--DERTLFRDQMRTSSFNLRRADSMEK---KEAVHRPVANINVAAILEKANA
'PpSCAR3'  ----PPPP--DERTLFLDQISNTSFNLSRPESVEK---KKCVLRSGTNINVAAILEKANA
'PtSCAR1'  RSA-NGK-DIDEKEDFLHQIRTKSFTLRRTA--TAKPTTLFSGP-TASNKVSAILEKANA
'PtSCAR2'  K-----------RDSLLEQIRTKSFNLKPATAT-RPSMQGVQGPKT-NLKVAAILEKANA
'OsSCAR1'  KVG-NDTKNLDEREELLQQIRSKTFNLRRTNASKTNTSSPTTA----NSSVVAILEKANA
'PtSCAR3'  KG---PKV--EERDSLLEQIRTKSFNLKPATVT-RPSIQGIQGPKT-NLKVAAILEKANA

[                    241                         264]
'AtSCAR1'  IRQAVASDDGEGESDT-WSDS-DT
'AtSCAR2'  IRMAMAGSDEDEDSDS-WSDS---
'AtSCAR3'  IRQAVASKDGD-ESDT-WS---DT
'AtSCAR4'  LRQAMAGSDDEHDSDS-WSE----
'AtSCARL'  ------------------------
'MtSCAR1'  IRQVVASDDGEDD-DN-WS---DT
'OsSCAR2'  IRQAVGS--DDEDGDN-WSESSDT
'OsSCAR3'  IRQAVA----DDDDEDSWSD----
'OsSCAR4'  IRQAHA-ENYDIDSEVSWSDSD--
'PpSCAR1'  IRQAYVGSDGEDDDEDDWSDS---
'PpSCAR2'  IRQAFAGSDDDDDGDDDWSDS---
'PpSCAR3'  IRQAFAGSDDDDD-EDDWSDS---
'PtSCAR1'  IRQAVASDDGEDD-DT-WS---DT
'PtSCAR2'  IRQALTGSDEDDDSDS-WSDS---
'OsSCAR1'  IRQAVASDEGGDD-DS-WS---DI
'PtSCAR3'  IRQALTGSDEDNDSDS-WSDS---

	;
ENDBLOCK;