#Squirrels: Cynomys outgroup

#NEXUS

begin trees;
	TREE cynomys = [&R] (Homo_sapiens:94.5,(Rattus_norvegicus:85.2,(((Ammospermophilus_interpres:7.4,((Ammospermophilus_harrisii:3.7,Ammospermophilus_insularis:3.7)'7':0.2,(Ammospermophilus_leucurus:3.4,Ammospermophilus_nelsoni:3.4)'8':0.5)'6':3.5)'5':4.5,(((Cynomys_gunnisoni:3.2,(Cynomys_leucurus:1.6,Cynomys_parvidens:1.6)'12':1.6)'11':0.2,(Cynomys_ludovicianus:0.5,Cynomys_mexicanus:0.5)'13':2.9)'10':4.4,(((Marmota_monax:2.7,((((Marmota_baibacina:1.5,Marmota_bobak:1.5)'20':0.6,(Marmota_sibirica:1.6,(Marmota_camtschatica:1.4,Marmota_himalayana:1.4)'22':0.2)'21':0.5)'19':0.2,(Marmota_caudata:1.5,Marmota_menzbieri:1.5)'23':0.8)'18':0.2,(Marmota_broweri:2.3,Marmota_marmota:2.3)'24':0.2)'17':0.2)'16':0.4,(Marmota_flaviventris:1.4,(Marmota_caligata:0.2,Marmota_olympus:0.2,Marmota_vancouverensis:0.2)'26':1.2)'25':1.7)'15':4.5,((Spermophilus_elegans:6.4,(Spermophilus_mexicanus:6.3,(Spermophilus_saturatus:6.2,(Spermophilus_annulatus:6.1,(Spermophilus_mohavensis:6.0,(Spermophilus_canus:5.8,(Spermophilus_tereticaudus:5.6,(((Spermophilus_alashanicus:2.5,((Spermophilus_xanthoprymnus:2.2,((Spermophilus_adocetus:1.8,Spermophilus_beldingi:1.8,Spermophilus_mollis:1.8,Spermophilus_musicus:1.8,Spermophilus_suslicus:1.8)'41':0.3,(Spermophilus_pygmaeus:2.0,(Spermophilus_brevicauda:1.1,Spermophilus_erythrogenys:1.1,Spermophilus_pallidicauda:1.1)'43':0.9,(Spermophilus_ralli:0.7,Spermophilus_relictus:0.7)'44':1.3)'42':0.1)'40':0.1)'39':0.2,(Spermophilus_madrensis:2.1,((Spermophilus_atricapillus:0.2,Spermophilus_beecheyi:0.2)'47':1.8,(Spermophilus_dauricus:1.8,Spermophilus_spilosoma:1.8)'48':0.2)'46':0.1)'45':0.3,(Spermophilus_fulvus:2.2,(Spermophilus_citellus:1.8,Spermophilus_major:1.8)'50':0.4)'49':0.2)'38':0.1)'37':2.9,(Spermophilus_brunneus:5.3,Spermophilus_townsendii:5.3)'51':0.1)'36':0.1,((Spermophilus_washingtoni:5.3,((Spermophilus_armatus:3.8,Spermophilus_richardsonii:3.8)'55':0.2,(Spermophilus_parryii:3.8,(Spermophilus_columbianus:3.5,Spermophilus_undulatus:3.5)'57':0.3)'56':0.2)'54':1.3)'53':0.1,(Spermophilus_franklinii:3.5,(Spermophilus_perotensis:3.2,Spermophilus_tridecemlineatus:3.2)'59':0.3)'58':1.9)'52':0.1)'35':0.1)'34':0.2)'33':0.2)'32':0.1)'31':0.1)'30':0.1)'29':0.1)'28':1.0,(Spermophilus_lateralis:5.0,Spermophilus_variegatus:5.0)'60':2.4)'27':0.2)'14':0.2)'9':4.1)'4':17.5,(Tamias_striatus:18.5,(Tamias_sibiricus:17.4,((Tamias_panamintinus:9.6,((Tamias_alpinus:3.7,Tamias_minimus:3.7)'66':5.8,(Tamias_speciosus:9.4,(Tamias_ochrogenys:9.2,Tamias_ruficaudus:9.2)'68':0.2)'67':0.1)'65':0.1)'64':4.5,((((Tamias_amoenus:12.6,(Tamias_quadrimaculatus:12.5,(Tamias_canipes:9.6,Tamias_durangae:9.6)'74':2.9)'73':0.1)'72':0.2,(Tamias_bulleri:8.4,(Tamias_rufus:6.5,((Tamias_cinereicollis:2.8,(Tamias_dorsalis:2.7,Tamias_quadrivittatus:2.7)'79':0.1)'78':0.2,(Tamias_palmeri:2.8,Tamias_umbrinus:2.8)'80':0.2)'77':3.5)'76':1.9)'75':4.4)'71':1.0,(Tamias_siskiyou:9.7,(Tamias_townsendii:4.2,(Tamias_senex:2.6,Tamias_sonomae:2.6)'83':1.6)'82':5.5)'81':4.1)'70':0.1,(Tamias_merriami:4.2,Tamias_obscurus:4.2)'84':9.7)'69':0.2)'63':3.3)'62':1.1)'61':10.9)'3':55.8)'2':9.3)'1';
end;


#Squirrels: Marmota outgroup

#NEXUS

begin trees;
	TREE marmota = [&R] (Homo_sapiens:94.5,(Rattus_norvegicus:85.2,((Tamias_striatus:21.3,(Tamias_sibiricus:20.2,((Tamias_panamintinus:12.5,((Tamias_alpinus:4.6,Tamias_minimus:4.6)'9':7.8,(Tamias_speciosus:12.2,(Tamias_ochrogenys:12.1,Tamias_ruficaudus:12.1)'11':0.1)'10':0.2)'8':0.1)'7':4.1,((((Tamias_amoenus:14.9,(Tamias_quadrimaculatus:14.8,(Tamias_canipes:11.3,Tamias_durangae:11.3)'17':3.5)'16':0.1)'15':0.2,(Tamias_bulleri:10.2,(Tamias_rufus:8.2,((Tamias_cinereicollis:3.6,(Tamias_dorsalis:3.4,Tamias_quadrivittatus:3.4)'22':0.2)'21':0.2,(Tamias_palmeri:3.6,Tamias_umbrinus:3.6)'23':0.2)'20':4.4)'19':2.0)'18':4.9)'14':1.1,(Tamias_siskiyou:10.4,(Tamias_townsendii:4.9,(Tamias_senex:3.1,Tamias_sonomae:3.1)'26':1.8)'25':5.5)'24':5.8)'13':0.2,(Tamias_merriami:4.9,Tamias_obscurus:4.9)'27':11.5)'12':0.2)'6':3.6)'5':1.1)'4':8.1,((Ammospermophilus_interpres:8.3,((Ammospermophilus_harrisii:5.1,Ammospermophilus_insularis:5.1)'31':0.2,(Ammospermophilus_leucurus:3.7,Ammospermophilus_nelsoni:3.7)'32':1.6)'30':3.0)'29':4.0,((((Cynomys_gunnisoni:2.6,(Cynomys_leucurus:1.7,Cynomys_parvidens:1.7)'37':0.9)'36':0.2,(Cynomys_ludovicianus:0.5,Cynomys_mexicanus:0.5)'38':2.3)'35':5.5,((Spermophilus_elegans:7.4,(Spermophilus_mexicanus:7.3,(Spermophilus_saturatus:7.2,(Spermophilus_annulatus:7.1,(Spermophilus_mohavensis:7.0,(Spermophilus_canus:6.9,(Spermophilus_tereticaudus:6.8,(((Spermophilus_alashanicus:3.8,((Spermophilus_xanthoprymnus:3.5,((Spermophilus_adocetus:2.9,Spermophilus_beldingi:2.9,Spermophilus_mollis:2.9,Spermophilus_musicus:2.9,Spermophilus_suslicus:2.9)'53':0.5,(Spermophilus_pygmaeus:3.1,(Spermophilus_brevicauda:1.6,Spermophilus_erythrogenys:1.6,Spermophilus_pallidicauda:1.6)'55':1.5,(Spermophilus_ralli:1.0,Spermophilus_relictus:1.0)'56':2.1)'54':0.3)'52':0.1)'51':0.2,(Spermophilus_madrensis:3.2,((Spermophilus_atricapillus:0.1,Spermophilus_beecheyi:0.1)'59':2.9,(Spermophilus_dauricus:2.9,Spermophilus_spilosoma:2.9)'60':0.1)'58':0.2)'57':0.5,(Spermophilus_fulvus:3.5,(Spermophilus_citellus:2.9,Spermophilus_major:2.9)'62':0.6)'61':0.2)'50':0.1)'49':2.7,(Spermophilus_brunneus:6.4,Spermophilus_townsendii:6.4)'63':0.1)'48':0.1,((Spermophilus_washingtoni:6.4,((Spermophilus_armatus:4.7,Spermophilus_richardsonii:4.7)'67':0.2,(Spermophilus_parryii:4.7,(Spermophilus_columbianus:4.4,Spermophilus_undulatus:4.4)'69':0.3)'68':0.2)'66':1.5)'65':0.1,(Spermophilus_franklinii:4.2,(Spermophilus_perotensis:3.8,Spermophilus_tridecemlineatus:3.8)'71':0.4)'70':2.3)'64':0.1)'47':0.2)'46':0.1)'45':0.1)'44':0.1)'43':0.1)'42':0.1)'41':0.1)'40':0.7,(Spermophilus_lateralis:5.5,Spermophilus_variegatus:5.5)'72':2.6)'39':0.2)'34':0.2,((Marmota_monax:3.0,((((Marmota_baibacina:1.6,Marmota_bobak:1.6)'78':0.6,(Marmota_sibirica:1.7,(Marmota_camtschatica:1.5,Marmota_himalayana:1.5)'80':0.2)'79':0.5)'77':0.3,(Marmota_caudata:1.6,Marmota_menzbieri:1.6)'81':0.9)'76':0.2,(Marmota_broweri:2.5,Marmota_marmota:2.5)'82':0.2)'75':0.3)'74':0.4,(Marmota_flaviventris:1.7,(Marmota_caligata:0.3,Marmota_olympus:0.3,Marmota_vancouverensis:0.3)'84':1.4)'83':1.7)'73':5.1)'33':3.8)'28':17.1)'3':55.8)'2':9.3)'1';
end;

#Squirrels: Spermophilus outgroup

#NEXUS

begin trees;
	TREE spermophilus = [&R] (Homo_sapiens:94.5,(Rattus_norvegicus:85.2,(((Ammospermophilus_interpres:7.4,((Ammospermophilus_harrisii:3.7,Ammospermophilus_insularis:3.7)'7':0.2,(Ammospermophilus_leucurus:3.4,Ammospermophilus_nelsoni:3.4)'8':0.5)'6':3.5)'5':4.5,((((Cynomys_gunnisoni:2.4,(Cynomys_leucurus:1.5,Cynomys_parvidens:1.5)'13':0.9)'12':0.2,(Cynomys_ludovicianus:0.4,Cynomys_mexicanus:0.4)'14':2.2)'11':4.9,((Marmota_monax:2.7,((((Marmota_baibacina:1.5,Marmota_bobak:1.5)'20':0.6,(Marmota_sibirica:1.5,(Marmota_camtschatica:1.4,Marmota_himalayana:1.4)'22':0.1)'21':0.6)'19':0.2,(Marmota_caudata:1.5,Marmota_menzbieri:1.5)'23':0.8)'18':0.2,(Marmota_broweri:2.3,Marmota_marmota:2.3)'24':0.2)'17':0.2)'16':0.3,(Marmota_flaviventris:1.4,(Marmota_caligata:0.2,Marmota_olympus:0.2,Marmota_vancouverensis:0.2)'26':1.2)'25':1.6)'15':4.5)'10':0.4,((Spermophilus_elegans:6.6,(Spermophilus_mexicanus:6.5,(Spermophilus_saturatus:6.4,(Spermophilus_annulatus:6.2,(Spermophilus_mohavensis:6.1,(Spermophilus_canus:6.0,(Spermophilus_tereticaudus:5.9,(((Spermophilus_alashanicus:2.6,((Spermophilus_xanthoprymnus:2.3,((Spermophilus_adocetus:1.9,Spermophilus_beldingi:1.9,Spermophilus_mollis:1.9,Spermophilus_musicus:1.9,Spermophilus_suslicus:1.9)'41':0.3,(Spermophilus_pygmaeus:2.0,(Spermophilus_brevicauda:1.1,Spermophilus_erythrogenys:1.1,Spermophilus_pallidicauda:1.1)'43':0.9,(Spermophilus_ralli:0.7,Spermophilus_relictus:0.7)'44':1.3)'42':0.2)'40':0.1)'39':0.2,(Spermophilus_madrensis:2.2,((Spermophilus_atricapillus:0.2,Spermophilus_beecheyi:0.2)'47':1.9,(Spermophilus_dauricus:1.9,Spermophilus_spilosoma:1.9)'48':0.2)'46':0.1)'45':0.3,(Spermophilus_fulvus:2.3,(Spermophilus_citellus:1.9,Spermophilus_major:1.9)'50':0.4)'49':0.2)'38':0.1)'37':3.1,(Spermophilus_brunneus:5.5,Spermophilus_townsendii:5.5)'51':0.2)'36':0.1,((Spermophilus_washingtoni:5.5,((Spermophilus_armatus:3.9,Spermophilus_richardsonii:3.9)'55':0.2,(Spermophilus_parryii:3.9,(Spermophilus_columbianus:3.7,Spermophilus_undulatus:3.7)'57':0.2)'56':0.2)'54':1.4)'53':0.2,(Spermophilus_franklinii:3.6,(Spermophilus_perotensis:3.3,Spermophilus_tridecemlineatus:3.3)'59':0.3)'58':2.1)'52':0.1)'35':0.1)'34':0.1)'33':0.1)'32':0.1)'31':0.2)'30':0.1)'29':0.1)'28':1.0,(Spermophilus_lateralis:5.1,Spermophilus_variegatus:5.1)'60':2.5)'27':0.3)'9':4.0)'4':17.5,(Tamias_striatus:18.5,(Tamias_sibiricus:17.4,((Tamias_panamintinus:9.8,((Tamias_alpinus:3.8,Tamias_minimus:3.8)'66':5.9,(Tamias_speciosus:9.5,(Tamias_ochrogenys:9.4,Tamias_ruficaudus:9.4)'68':0.1)'67':0.2)'65':0.1)'64':4.5,((((Tamias_amoenus:12.8,(Tamias_quadrimaculatus:12.7,(Tamias_canipes:9.7,Tamias_durangae:9.7)'74':3.0)'73':0.1)'72':0.1,(Tamias_bulleri:8.6,(Tamias_rufus:6.6,((Tamias_cinereicollis:2.9,(Tamias_dorsalis:2.8,Tamias_quadrivittatus:2.8)'79':0.1)'78':0.2,(Tamias_palmeri:2.9,Tamias_umbrinus:2.9)'80':0.2)'77':3.5)'76':2.0)'75':4.3)'71':1.1,(Tamias_siskiyou:9.8,(Tamias_townsendii:4.2,(Tamias_senex:2.6,Tamias_sonomae:2.6)'83':1.6)'82':5.6)'81':4.2)'70':0.1,(Tamias_merriami:4.2,Tamias_obscurus:4.2)'84':9.9)'69':0.2)'63':3.1)'62':1.1)'61':10.9)'3':55.8)'2':9.3)'1';
end;

#Monkeys

#NEXUS

begin trees;
	TREE monkey1993 = [&R] (Canis_lupus:99.0,(Rattus_norvegicus:98.8,(((((Alouatta_caraya:4.9,(Alouatta_pigra:4.8,(Alouatta_fusca:4.3,(Alouatta_belzebul:4.1,(Alouatta_sara:3.9,Alouatta_seniculus:3.9)'11':0.2)'10':0.2)'9':0.5)'8':0.1)'7':0.1,(Alouatta_coibensis:0.1,Alouatta_palliata:0.1)'12':4.9)'6':9.1,((Ateles_paniscus:5.6,((Ateles_belzebuth:4.0,(Ateles_chamek:2.3,Ateles_marginatus:2.3)'17':1.7)'16':1.4,(Ateles_fusciceps:5.3,Ateles_geoffroyi:5.3)'18':0.1)'15':0.2)'14':5.4,(Brachyteles_arachnoides:10.1,(Lagothrix_flavicauda:4.4,Lagothrix_lagotricha:4.4)'20':5.7)'19':0.9)'13':3.1)'5':3.0,((((Cacajao_calvus:2.7,Cacajao_melanocephalus:2.7)'24':1.9,(Chiropotes_albinasus:2.7,Chiropotes_satanas:2.7)'25':1.9)'23':3.7,(Pithecia_pithecia:8.1,(Pithecia_aequatorialis:5.9,(Pithecia_albicans:4.6,Pithecia_irrorata:4.6,Pithecia_monachus:4.6)'28':1.3)'27':2.2)'26':0.2)'22':7.2,(Callicebus_torquatus:9.3,((Callicebus_personatus:5.5,(((Callicebus_brunneus:1.3,Callicebus_hoffmannsi:1.3)'34':0.5,(Callicebus_cinerascens:1.3,Callicebus_moloch:1.3)'35':0.5)'33':3.4,(Callicebus_dubius:3.3,(Callicebus_caligatus:1.9,Callicebus_cupreus:1.9)'37':1.4)'36':1.9)'32':0.3)'31':3.7,(Callicebus_modestus:5.5,(Callicebus_donacophilus:4.2,Callicebus_oenanthe:4.2,Callicebus_olallae:4.2)'39':1.3)'38':3.7)'30':0.1)'29':6.2)'21':1.6)'4':1.3,((((Aotus_nancymaae:1.7,(Aotus_miconax:1.5,(Aotus_infulatus:1.3,(Aotus_nigriceps:0.9,(Aotus_azarai:0.7,Aotus_trivirgatus:0.7)'47':0.2)'46':0.4)'45':0.2)'44':0.2)'43':0.2,(Aotus_brumbacki:1.7,Aotus_vociferans:1.7)'48':0.2)'42':1.3,(Aotus_hershkovitzi:3.0,Aotus_lemurinus:3.0)'49':0.2)'41':15.1,((((Callimico_goeldii:12.6,((Callithrix_pygmaea:5.0,(Callithrix_argentata:1.1,Callithrix_humeralifera:1.1)'56':3.9)'55':0.8,((Callithrix_aurita:1.5,Callithrix_flaviceps:1.5)'58':0.2,((Callithrix_geoffroyi:1.4,Callithrix_kuhlii:1.4)'60':0.1,(Callithrix_jacchus:1.2,Callithrix_penicillata:1.2)'61':0.3)'59':0.2)'57':4.1)'54':6.8)'53':1.5,(Leontopithecus_chrysomelas:1.6,(Leontopithecus_rosalia:1.5,(Leontopithecus_caissara:1.3,Leontopithecus_chrysopygus:1.3)'64':0.2)'63':0.1)'62':12.5)'52':0.8,(((Saguinus_bicolor:2.4,Saguinus_midas:2.4)'67':3.4,((Saguinus_leucopus:2.9,(Saguinus_geoffroyi:0.6,Saguinus_oedipus:0.6)'70':2.3)'69':2.7,(Saguinus_imperator:3.6,(Saguinus_labiatus:2.1,Saguinus_mystax:2.1)'72':1.5)'71':2.0)'68':0.2)'66':0.9,(Saguinus_inustus:5.6,(Saguinus_nigricollis:4.3,(Saguinus_fuscicollis:2.6,Saguinus_tripartitus:2.6)'75':1.7)'74':1.3)'73':1.1)'65':8.2)'51':2.9,((Cebus_apella:6.2,(Cebus_olivaceus:3.2,(Cebus_albifrons:2.4,Cebus_capucinus:2.4)'79':0.8)'78':3.0)'77':10.6,((Saimiri_boliviensis:2.0,Saimiri_vanzolinii:2.0)'81':0.2,(Saimiri_sciureus:1.1,(Saimiri_oerstedii:0.9,Saimiri_ustus:0.9)'83':0.2)'82':1.1)'80':14.6)'76':1.0)'50':0.5)'40':0.1)'3':80.4)'2':0.2)'1';
end;

#Possums

#NEXUS

begin trees;

TREE possum = [&U] (((Acrobates_pygmaeus:11.4000000000,Distoechurus_pennatus:11.4000000000):21.2000000000,(((((Dactylopsila_megalura:17.2000000000, Dactylopsila_palpator:17.2000000000):0.0000000000,Dactylopsila_tatei:17.2000000000):0.0000000000,Dactylopsila_trivirgata:17.2000000000):9.9000000000,Gymnobelideus_leadbeateri:27.1000000000):2.9000000000,((((Petaurus_abidi:5.3000000000,Petaurus_australis:5.3000000000):0.0000000000,Petaurus_breviceps:5.3000000000):0.0000000000,Petaurus_gracilis:5.3000000000):0.0000000000,Petaurus_norfolcensis:5.3000000000):24.7000000000):2.6000000000):12.5000000000,(((Ailurops_ursinus:24.5000000000,(((((((Phalanger_carmelitae:5.2000000000,Phalanger_vestitus:5.2000000000):2.2000000000,Phalanger_orientalis:7.4000000000):0.7000000000,Phalanger_sericeus:8.1000000000):3.0000000000,Phalanger_lullulae:11.1000000000):2.6000000000,Phalanger_pelengensis:13.7000000000):0.1000000000,(Strigocuscus_celebensis:5.6000000000,Strigocuscus_gymnotis:5.6000000000):8.2000000000):4.9000000000,(Spilocuscus_maculatus:7.6000000000,Spilocuscus_rufoniger:7.6000000000):11.1000000000):5.8000000000):1.6000000000,((Phalanger_matanim:7.5000000000,Phalanger_ornatus:7.5000000000):11.5000000000,(((Trichosurus_arnhemensis:4.5000000000,Trichosurus_vulpecula:4.5000000000):3.4000000000,Trichosurus_caninus:7.9000000000):5.5000000000,Wyulda_squamicaudata:13.4000000000):5.6000000000):7.1000000000):13.8000000000,(Burramys_parvus:33.1000000000,(Cercartetus_caudatus:20.4000000000,((Cercartetus_concinnus:14.4000000000,Cercartetus_lepidus:14.4000000000):0.0000000000,Cercartetus_nanus:14.4000000000):6.0000000000):12.7000000000):6.8000000000):5.2000000000);

end;