GENE	Name	DESC	Status	Pos	Coords	%Uniqueness	YPD0.1 (rpkb)	YPD0.2 (rpkb)	YPD15.1 (rpkb)	YPD15.2 (rpkb)	HS15.1 (rpkb)	HS15.2 (rpkb)	YPD0 (rpkb)	YPD15 (rpkb)	HS15 (rpkb)	YPD0 (copies/cell)	YPD15 (copies/cell)	HS15 (copies/cell)	log2(HS15/YPD15)[Seq]	log2(HS15/YPD15)[Hyb]	CorrSTU
YAL069W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr1:335-649	335-649	35.8%	8.86	0.00	8.86	0.00	0.00	8.86	4.43	4.43	4.43	0.02	0.02	0.02	0.00	-0.17	
YAL068W-A		"Dubious open reading frame unlikely to encode a protein; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr1:538-792	538-792	23.3%	0.00	0.00	0.00	0.00	0.00	16.83	0.00	0.00	8.42	0.00	0.00	0.03	Inf	NaN	
YAL068C		Hypothetical protein	Uncharacterized	chr1:1807-2169	1807-2169	3.7%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.44	
YAL067W-A		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr1:2480-2707	2480-2707	16.7%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	NaN	
YAL067C	SEO1	"Putative permease, member of the allantoate transporter subfamily of the major facilitator superfamily; mutation confers resistance to ethionine sulfoxide"	Verified	chr1:7236-9017	7236-9017	99.1%	4.53	3.96	3.40	3.40	6.79	9.62	4.24	3.40	8.21	0.02	0.01	0.03	1.27	-0.36	
YAL066W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr1:10092-10400	10092-10400	99.6%	3.25	0.00	0.00	0.00	0.00	0.00	1.62	0.00	0.00	0.01	0.00	0.00	NaN	NaN	
YAL065C		Putative protein of unknown function; has homology to FLO1; possible pseudogene	Uncharacterized	chr1:11566-11952	11566-11952	39.1%	6.61	13.22	13.22	0.00	19.83	33.05	9.91	6.61	26.44	0.04	0.03	0.11	2.00	-0.02	
YAL064W-B		Fungal-specific protein of unknown function	Uncharacterized	chr1:12047-12427	12047-12427	11.5%	0.00	22.84	0.00	22.84	22.84	22.84	11.42	11.42	22.84	0.04	0.05	0.09	1.00	0.73	
YAL064C-A		Putative protein of unknown function; YAL064C-A is not an essential gene	Uncharacterized	chr1:13364-13744	13364-13744	73.6%	32.09	21.39	39.22	17.83	32.09	78.43	26.74	28.52	55.26	0.10	0.12	0.23	0.95	0.68	
YAL064W		"Protein of unknown function; may interact with ribosomes, based on co-purification experiments"	Verified	chr1:21526-21852	21526-21852	39.6%	0.00	0.00	0.00	0.00	7.73	7.73	0.00	0.00	7.73	0.00	0.00	0.03	Inf	0.81	
YAL063C-A		Putative protein of unknown function; identified by expression profiling and mass spectrometry	Uncharacterized	chr1:22397-22687	22397-22687	46.0%	7.47	7.47	7.47	0.00	7.47	7.47	7.47	3.73	7.47	0.03	0.02	0.03	1.00	NaN	
YAL063C	FLO9	"Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation"	Verified	chr1:24001-27969	24001-27969	17.9%	45.12	36.66	28.20	15.51	31.02	16.92	40.89	21.85	23.97	0.15	0.09	0.10	0.13	0.49	Frag<80[2]
YAL062W	GDH3	"NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources"	Verified	chr1:31568-32941	31568-32941	97.3%	65.81	86.01	67.31	52.35	195.95	133.13	75.91	59.83	164.54	0.28	0.24	0.68	1.46	0.73	Matched[4]
YAL061W	BDH2	Putative medium-chain alcohol dehydrogenase with similarity to BDH1; transcription induced by constitutively active PDR1 and PDR3; BDH2 is an essential gene	Uncharacterized	chr1:33449-34702	33449-34702	98.1%	121.12	160.95	286.94	240.61	2773.51	2137.85	141.03	263.78	2455.68	0.52	1.07	10.17	3.22	3.01	Matched[5]
YAL060W	BDH1	"NAD-dependent (2R,3R)-2,3-butanediol dehydrogenase, a zinc-containing medium-chain alcohol dehydrogenase, produces 2,3-butanediol from acetoin during fermentation and allows using 2,3-butanediol as a carbon source during aerobic growth"	Verified	chr1:35156-36304	35156-36304	98.5%	646.62	907.21	726.12	741.14	2734.88	1817.07	776.91	733.63	2275.98	2.87	2.98	9.43	1.63	1.42	Matched[6]
YAL059W	ECM1	"Protein of unknown function, localized in the nucleoplasm and the nucleolus, genetically interacts with MTR2 in 60S ribosomal protein subunit export"	Verified	chr1:36510-37148	36510-37148	98.2%	277.18	117.88	152.93	111.51	41.42	27.08	197.53	132.22	34.25	0.73	0.54	0.14	-1.95	-2.74	Covered/w/another[7]
YAL059C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified gene ECM1/YAL059W"	Dubious	chr1:36497-36919	36497-36919	98.3%	218.86	96.20	115.44	108.23	38.48	16.84	157.53	111.83	27.66	0.58	0.45	0.11	-2.02	NaN	Covered/w/another[7]
YAL058W	CNE1	"Calnexin; integral membrane ER chaperone involved in folding and quality control of glycoproteins; chaperone activity is inhibited by Mpd1p, with which Cne1p interacts; 24% identical to mammalian calnexin; Ca+ binding not yet shown in yeast"	Verified	chr1:37465-38973	37465-38973	98.6%	112.92	89.39	98.13	88.72	85.36	106.20	101.16	93.43	95.78	0.37	0.38	0.40	0.04	0.75	Covered/w/another[7]
YAL056C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr1:38697-39047	38697-39047	98.9%	126.74	112.34	109.46	74.89	100.82	112.34	119.54	92.17	106.58	0.44	0.37	0.44	0.21	0.15	Covered/w/another[7]
YAL056W	GPB2	"Proposed beta subunit of the heterotrimeric G protein; interacts with the receptor Grp1p, affects signaling by altering the level of phosphorylation of PKS substrates; regulates pseudohyphal growth through cAMP levels; homolog of Gpb1p"	Verified	chr1:39260-41902	39260-41902	98.6%	128.90	161.12	123.91	115.47	121.61	102.43	145.01	119.69	112.02	0.54	0.49	0.46	-0.10	0.01	Covered/w/another[8]
YAL055W	PEX22	"Putative peroxisomal membrane protein required for import of peroxisomal proteins, functionally complements a Pichia pastoris pex22 mutation"	Verified	chr1:42178-42720	42178-42720	98.1%	108.85	144.51	120.11	106.98	236.47	116.36	126.68	113.54	176.42	0.47	0.46	0.73	0.64	0.49	Covered/w/another[8]
YAL054C	ACS1	"Acetyl-coA synthetase isoform which, along with Acs2p, is the nuclear source of acetyl-coA for histone acetlyation; expressed during growth on nonfermentable carbon sources and under aerobic conditions"	Verified	chr1:42882-45023	42882-45023	98.6%	31.73	40.73	42.15	30.31	88.09	54.94	36.23	36.23	71.52	0.13	0.15	0.30	0.98	0.49	Frag<80[9]
YAL053W	FLC2	Putative FAD transporter; required for uptake of FAD into endoplasmic reticulum; involved in cell wall maintenance	Verified	chr1:45900-48251	45900-48251	99.0%	162.39	153.36	150.36	119.43	142.19	130.60	157.87	134.89	136.40	0.58	0.55	0.57	0.02	0.58	Matched[10]
YAL051W	OAF1	"Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis"	Verified	chr1:48565-51708	48565-51708	98.9%	73.00	62.38	56.92	56.27	68.49	70.10	67.69	56.60	69.30	0.25	0.23	0.29	0.29	0.71	Matched[11]
YAL049C		"Cytoplasmic protein of unknown function, potential Hsp82p interactor"	Uncharacterized	chr1:51856-52596	51856-52596	99.0%	340.81	298.55	373.53	298.55	554.84	399.43	319.68	336.04	477.14	1.18	1.36	1.98	0.51	0.60	Matched[12]
YAL047W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr1:54585-54914	54585-54914	99.1%	21.40	24.45	15.28	9.17	30.57	36.68	22.92	12.23	33.62	0.08	0.05	0.14	1.46	NaN	Covered/w/another[13]
YAL048C	GEM1	"Evolutionarily-conserved tail-anchored outer mitochondrial membrane GTPase which regulates mitochondrial morphology; cells lacking Gem1p contain collapsed, globular, or grape-like mitochondria; not required for pheromone-induced cell death"	Verified	chr1:52802-54790	52802-54790	99.0%	42.14	48.23	42.14	44.68	37.06	45.69	45.18	43.41	41.38	0.17	0.18	0.17	-0.07	0.82	Matched[13]
YAL047C	SPC72	"Component of the cytoplasmic Tub4p (gamma-tubulin) complex, binds spindle pole bodies and links them to microtubules; has roles in astral microtubule formation and stabilization"	Verified	chr1:54990-56858	54990-56858	99.2%	51.76	56.62	49.07	50.69	57.69	46.91	54.19	49.88	52.30	0.20	0.20	0.22	0.07	0.57	Matched[14]
YAL046C		Putative protein of unknown function; YAL046C is not an essential gene	Uncharacterized	chr1:57030-57386	57030-57386	98.9%	212.39	192.57	252.04	184.07	305.84	164.25	202.48	218.05	235.04	0.75	0.89	0.97	0.11	-0.12	Matched[15]
YAL044W-A		Putative protein of unknown function; similar to S. pombe uvi31 which is a putative DNA repair protein	Uncharacterized	chr1:57519-57851	57519-57851	98.5%	310.94	350.57	344.47	301.79	506.03	289.60	330.75	323.13	397.82	1.22	1.31	1.65	0.30	-0.10	Matched[16]
YAL045C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; almost completely overlaps YAL044W-A"	Dubious	chr1:57489-57797	57489-57797	98.5%	285.83	344.97	315.40	282.55	440.25	236.55	315.40	298.97	338.40	1.16	1.21	1.40	0.18	-0.48	Matched[16]
YAL044C	GCV3	"H subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm"	Verified	chr1:57951-58463	57951-58463	98.6%	2555.34	2387.35	2561.26	2156.13	2318.18	1713.44	2471.34	2358.70	2015.81	9.12	9.57	8.35	-0.23	-0.78	Matched[17]
YAL043C	PTA1	"Subunit of holo-CPF, a multiprotein complex and functional homolog of mammalian CPSF, required for the cleavage and polyadenylation of mRNA and snoRNA 3' ends; involved in pre-tRNA processing; binds to the phosphorylated CTD of RNAPII"	Verified	chr1:58696-61053	58696-61053	98.6%	129.44	134.60	133.31	104.07	92.88	87.29	132.02	118.69	90.09	0.49	0.48	0.37	-0.40	0.27	Matched[18]
YAL042W	ERV46	"Protein localized to COPII-coated vesicles, forms a complex with Erv41p; involved in the membrane fusion stage of transport"	Verified	chr1:61317-62564	61317-62564	98.2%	713.37	742.76	758.26	682.36	433.41	361.58	728.06	720.31	397.50	2.69	2.92	1.65	-0.86	-0.35	Matched[19]
YAL042C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified ORF ERV46/YAL042W; YAL042C-A is a non-essential gene"	Dubious	chr1:61232-61609	61232-61609	98.3%	371.47	430.69	425.30	390.31	188.43	212.65	401.08	407.81	200.54	1.48	1.66	0.83	-1.02	0.08	Covered/w/another[19]
YAL041W	CDC24	"Guanine nucleotide exchange factor (GEF or GDP-release factor) for Cdc42p; required for polarity establishment and maintenance, and mutants have morphological defects in bud formation and shmooing"	Verified	chr1:62841-65405	62841-65405	98.9%	165.11	180.08	152.10	132.79	139.89	140.68	172.59	142.45	140.28	0.64	0.58	0.58	-0.02	0.39	Matched[20]
YAL040C	CLN3	"G1 cyclin involved in cell cycle progression; activates Cdc28p kinase to promote the G1 to S phase transition; plays a role in regulating transcription of the other G1 cyclins, CLN1 and CLN2; regulated by phosphorylation and proteolysis"	Verified	chr1:65779-67521	65779-67521	98.3%	321.45	259.02	292.28	240.94	201.85	259.02	290.24	266.61	230.44	1.07	1.08	0.95	-0.21	0.43	Matched[22]
YAL039C	CYC3	"Cytochrome c heme lyase (holocytochrome c synthase), attaches heme to apo-cytochrome c (Cyc1p or Cyc7p) in the mitochondrial intermembrane space; human ortholog may have a role in microphthalmia with linear skin defects (MLS)"	Verified	chr1:68717-69526	68717-69526	98.6%	199.11	165.30	255.47	221.65	207.88	152.78	182.21	238.56	180.33	0.67	0.97	0.75	-0.40	-0.33	Matched[24]
YAL038W	CDC19	"Pyruvate kinase, functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvate, the input for aerobic (TCA cycle) or anaerobic (glucose fermentation) respiration"	Verified	chr1:71787-73289	71787-73289	98.8%	28061.87	29476.01	26277.86	25173.62	11775.99	11204.67	28768.94	25725.74	11490.33	106.20	104.43	47.61	-1.16	-2.03	Matched[26]
YAL037C-B		"Dubious open reading frame unlikely to encode a protein; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr1:72327-73301	72327-73301	98.8%	31690.55	33132.92	29417.44	27787.12	13759.09	12242.99	32411.73	28602.29	13001.04	119.65	116.10	53.87	-1.14	NaN	Matched[26]
YAL037C-A		Putative protein of unknown function	Uncharacterized	chr1:73427-73519	73427-73519	99.0%	1357.47	1324.89	1020.81	868.78	477.83	249.77	1341.18	944.80	363.80	4.95	3.84	1.51	-1.38	NaN	Covered/w/another[26]
YAL037W		Putative protein of unknown function	Uncharacterized	chr1:74021-74824	74021-74824	99.0%	38.95	31.42	28.90	32.67	31.42	15.08	35.19	30.79	23.25	0.13	0.12	0.10	-0.41	-0.95	Matched[27]
YAL036C	RBG1	Member of the DRG family of GTP-binding proteins; interacts with translating ribosomes and with Tma46p	Verified	chr1:75044-76153	75044-76153	99.1%	459.30	284.67	284.67	194.63	60.03	60.03	371.99	239.65	60.03	1.37	0.97	0.25	-2.00	-1.58	Matched[28]
YAL035W	FUN12	"GTPase, required for general translation initiation by promoting Met-tRNAiMet binding to ribosomes and ribosomal subunit joining; homolog of bacterial IF2"	Verified	chr1:76428-79436	76428-79436	97.8%	1022.77	659.32	775.15	787.71	231.66	362.44	841.04	781.43	297.05	3.10	3.17	1.23	-1.40	-0.44	Matched[29]
YAL034W-A	MTW1	Essential component of the MIND kinetochore complex (Mtw1p Including Nnf1p-Nsl1p-Dsn1p) which joins kinetochore subunits contacting DNA to those contacting microtubules; critical to kinetochore assembly	Verified	chr1:79719-80588	79719-80588	98.4%	74.76	45.55	75.92	39.71	43.22	26.87	60.15	57.82	35.04	0.22	0.23	0.15	-0.72	-0.28	Matched[30]
YAL034C-B		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr1:79490-79843	79490-79843	99.2%	76.87	62.63	85.41	59.79	31.32	37.01	69.75	72.60	34.16	0.26	0.29	0.14	-1.09	-0.19	Frag<80[30]
YAL034C	FUN19	Non-essential protein of unknown function	Verified	chr1:80711-81952	80711-81952	98.7%	115.03	141.95	121.55	119.11	411.98	391.58	128.49	120.33	401.78	0.47	0.49	1.66	1.74	2.32	Matched[31]
YAL033W	POP5	"Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends"	Verified	chr1:82707-83228	82707-83228	98.5%	208.02	134.14	161.36	110.81	124.42	36.94	171.08	136.09	80.68	0.63	0.55	0.33	-0.75	-1.35	Covered/w/another[32]
YAL032C	PRP45	Protein required for pre-mRNA splicing; associates with the spliceosome and interacts with splicing factors Prp22p and Prp46p; orthologous to human transcriptional coactivator SKIP and can activate transcription of a reporter gene	Verified	chr1:83336-84475	83336-84475	99.1%	80.56	95.61	102.70	86.76	115.09	77.02	88.09	94.73	96.06	0.33	0.38	0.40	0.02	0.30	Covered/w/another[32]
YAL031W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr1:84670-84978	84670-84978	98.9%	114.57	137.48	127.66	157.12	219.31	157.12	126.02	142.39	188.22	0.47	0.58	0.78	0.40	NaN	Covered/w/another[32]
YAL031C	GIP4	Cytoplasmic Glc7-interacting protein whose overexpression relocalizes Glc7p from the nucleus and prevents chromosome segregation; potential Cdc28p substrate	Verified	chr1:84750-87032	84750-87032	98.9%	89.50	105.89	101.02	109.88	123.61	120.51	97.69	105.45	122.06	0.36	0.43	0.51	0.21	0.87	Covered/w/another[32]
YAL030W	SNC1	Vesicle membrane receptor protein (v-SNARE) involved in the fusion between Golgi-derived secretory vesicles with the plasma membrane; proposed to be involved in endocytosis; member of the synaptobrevin/VAMP family of R-type v-SNARE proteins	Verified	chr1:87287-87753	87287-87388,87502-87753	98.4%	309.97	424.78	344.42	255.44	797.90	548.19	367.38	299.93	673.04	1.36	1.22	2.79	1.17	0.74	Matched[33]
YAL029C	MYO4	"One of two type V myosin motors (along with MYO2) involved in actin-based transport of cargos; required for mRNA transport, including ASH1 mRNA, and facilitating the growth and movement of ER tubules into the growing bud along with She3p"	Verified	chr1:87856-92271	87856-92271	99.3%	201.41	186.59	153.51	144.39	57.94	82.12	194.00	148.95	70.03	0.72	0.60	0.29	-1.09	-0.61	Matched[34]
YAL028W	FRT2	"Tail-anchored endoplasmic reticulum membrane protein, interacts with homolog Frt1p but is not a substrate of calcineurin (unlike Frt1p), promotes growth in conditions of high Na+, alkaline pH, or cell wall stress; potential Cdc28p substrate"	Verified	chr1:92901-94487	92901-94487	98.8%	54.86	139.70	66.34	85.48	206.04	194.56	97.28	75.91	200.30	0.36	0.31	0.83	1.40	1.12	Matched[35]
YAL027W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; YAL027W is a non-essential gene	Uncharacterized	chr1:94688-95473	94688-95473	98.8%	85.00	99.17	81.14	83.71	96.59	60.53	92.08	82.43	78.56	0.34	0.33	0.33	-0.07	-0.04	Matched[36]
YAL026C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YAL027W and the verified gene DRS2"	Dubious	chr1:95387-95824	95387-95824	99.3%	407.05	365.66	335.76	287.47	388.65	179.38	386.35	311.61	284.02	1.43	1.26	1.18	-0.13	NaN	
YAL026C	DRS2	Aminophospholipid translocase (flippase) that maintains membrane lipid asymmetry in post-Golgi secretory vessicles; contributes to clathrin-coated vesicle formation and endocytosis; mutations in human homolog ATP8B1 result in liver disease	Verified	chr1:95631-99698	95631-99698	99.1%	186.01	172.37	162.95	152.53	106.65	108.38	179.19	157.74	107.52	0.66	0.64	0.45	-0.55	-0.13	Frag>80[37,38,39]
YAL025C	MAK16	"Essential nuclear protein, constituent of 66S pre-ribosomal particles; required for maturation of 25S and 5.8S rRNAs; required for maintenance of M1 satellite double-stranded RNA of the L-A virus"	Verified	chr1:100226-101146	100226-101146	99.5%	355.85	210.67	239.05	162.64	12.01	10.92	283.26	200.85	11.46	1.05	0.82	0.05	-4.13	-4.21	Frag>80[39,40]
YAL024C	LTE1	"Putative GDP/GTP exchange factor required for mitotic exit at low temperatures; acts as a guanine nucleotide exchange factor (GEF) for Tem1p, which is a key regulator of mitotic exit; physically associates with Ras2p-GTP"	Verified	chr1:101566-105873	101566-105873	99.2%	57.57	49.62	41.42	43.30	31.13	33.00	53.59	42.36	32.06	0.20	0.17	0.13	-0.40	0.03	Matched[41]
YAL023C	PMT2	"Protein O-mannosyltransferase, transfers mannose residues from dolichyl phosphate-D-mannose to protein serine/threonine residues; acts in a complex with Pmt1p, can instead interact with Pmt5p in some conditions; target for new antifungals"	Verified	chr1:106273-108552	106273-108552	98.6%	837.27	699.35	871.97	746.51	535.64	654.42	768.31	809.24	595.03	2.84	3.28	2.47	-0.44	0.22	Frag>80[42,43]
YAL022C	FUN26	Nucleoside transporter with broad nucleoside selectivity; localized to intracellular membranes	Verified	chr1:108878-110431	108878-110431	98.5%	189.37	166.52	191.33	148.89	174.35	124.07	177.94	170.11	149.21	0.66	0.69	0.62	-0.19	0.06	Matched[44]
YAL021C	CCR4	"Component of the CCR4-NOT transcriptional complex, which is involved in regulation of gene expression; component of the major cytoplasmic deadenylase, which is involved in mRNA poly(A) tail shortening"	Verified	chr1:110847-113360	110847-113360	97.7%	216.97	194.99	193.77	197.02	132.71	178.30	205.98	195.40	155.50	0.76	0.79	0.64	-0.33	0.33	Matched[45]
YAL019W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr1:114251-114820	114251-114820	99.3%	47.70	38.87	51.24	45.94	53.00	31.80	43.29	48.59	42.40	0.16	0.20	0.18	-0.20	NaN	Frag<80[46]
YAL020C	ATS1	"Protein required, with Elongator complex, Kti11p, and Kti12p, for modification of wobble nucleosides in tRNA; has a potential role in regulatory interactions between microtubules and the cell cycle"	Verified	chr1:113615-114616	113615-114616	98.8%	89.86	84.81	90.87	72.70	96.93	53.51	87.34	81.78	75.22	0.32	0.33	0.31	-0.12	0.23	Matched[46]
YAL019W	FUN30	"Protein whose overexpression affects chromosome stability, potential Cdc28p substrate; homolog of Snf2p; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr1:114920-118315	114920-118315	98.6%	157.44	116.81	110.24	103.66	24.20	32.86	137.12	106.95	28.53	0.51	0.43	0.12	-1.91	-1.41	Matched[47]
YAL018C		Putative protein of unknown function	Uncharacterized	chr1:118565-119542	118565-119542	99.0%	0.00	1.03	2.07	1.03	7.23	6.20	0.52	1.55	6.71	0.00	0.01	0.03	2.12	0.84	
YAL017W	PSK1	One of two (see also PSK2) PAS domain containing S/T protein kinases; coordinately regulates protein synthesis and carbohydrate metabolism and storage in response to a unknown metabolite that reflects nutritional status	Verified	chr1:120226-124296	120226-124296	98.6%	142.76	183.13	172.66	195.83	241.43	323.40	162.94	184.25	282.41	0.60	0.75	1.17	0.62	1.50	Matched[48]
YAL016C-B		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr1:124308-124493	124308-124493	99.4%	194.81	335.51	270.58	238.11	660.20	432.92	265.16	254.34	546.56	0.98	1.03	2.26	1.10	NaN	Covered/w/another[48]
YAL016W	TPD3	"Regulatory subunit A of the heterotrimeric protein phosphatase 2A, which also contains regulatory subunit Cdc55p and either catalytic subunit Pph21p or Pph22p; required for cell morphogenesis and for transcription by RNA polymerase III"	Verified	chr1:124880-126787	124880-126787	98.9%	347.07	321.63	375.15	322.16	493.31	429.20	334.35	348.66	461.25	1.23	1.42	1.91	0.40	0.89	Matched[49]
YAL016C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr1:124756-125070	124756-125070	98.4%	135.45	119.32	161.25	183.82	161.25	206.40	127.39	172.53	183.82	0.47	0.70	0.76	0.09	NaN	Covered/w/another[49]
YAL015C	NTG1	"DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase involved in base excision repair, localizes to the nucleus and mitochondrion"	Verified	chr1:126904-128103	126904-128103	99.1%	103.41	110.98	118.55	83.23	258.95	145.45	107.20	100.89	202.20	0.40	0.41	0.84	1.00	0.66	Matched[50]
YAL014C	SYN8	Endosomal SNARE related to mammalian syntaxin 8	Verified	chr1:128253-129020	128253-129020	99.0%	281.55	259.18	240.76	157.88	353.91	228.92	270.37	199.32	291.42	1.00	0.81	1.21	0.55	0.71	Matched[51]
YAL013W	DEP1	"Transcriptional modulator involved in regulation of structural phospholipid biosynthesis genes and metabolically unrelated genes, as well as maintenance of telomeres, mating efficiency, and sporulation"	Verified	chr1:129271-130533	129271-130533	97.8%	111.70	131.13	140.84	111.70	145.69	125.46	121.41	126.27	135.58	0.45	0.51	0.56	0.10	0.65	Matched[52]
YAL012W	CYS3	"Cystathionine gamma-lyase, catalyzes one of the two reactions involved in the transsulfuration pathway that yields cysteine from homocysteine with the intermediary formation of cystathionine"	Verified	chr1:130802-131986	130802-131986	98.8%	1032.86	1051.65	1133.66	996.97	782.54	754.35	1042.25	1065.32	768.45	3.85	4.32	3.18	-0.47	0.27	Matched[53]
YAL011W	SWC3	"Protein of unknown function, component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; required for formation of nuclear-associated array of smooth endoplasmic reticulum known as karmellae"	Verified	chr1:132202-134079	132202-134079	98.1%	79.25	93.90	78.16	71.11	53.74	42.88	86.57	74.63	48.31	0.32	0.30	0.20	-0.63	-0.21	Covered/w/another[54]
YAL010C	MDM10	Subunit of both the Mdm10-Mdm12-Mmm1 complex and the mitochondrial sorting and assembly machinery (SAM complex); functions in both the general and Tom40p-specific pathways for import and assembly of outer membrane beta-barrel proteins	Verified	chr1:134186-135667	134186-135667	99.1%	49.02	64.00	44.93	43.57	88.51	72.85	56.51	44.25	80.68	0.21	0.18	0.33	0.87	0.80	Covered/w/another[54]
YAL009W	SPO7	"Regulatory subunit of Nem1p-Spo7p phosphatase holoenzyme, which regulates nuclear growth by controlling recruitment of Pah1p onto promoters of phospholipid biosynthetic genes; required for normal nuclear envelope morphology and sporulation"	Verified	chr1:135856-136635	135856-136635	98.6%	106.64	143.05	120.94	114.44	114.44	117.04	124.84	117.69	115.74	0.46	0.48	0.48	-0.02	0.05	Frag>80[55,56]
YAL008W	FUN14	Mitochondrial protein of unknown function	Verified	chr1:136916-137512	136916-137512	98.6%	247.98	434.82	263.27	336.31	988.54	681.10	341.40	299.79	834.82	1.26	1.22	3.46	1.48	0.64	Matched[57]
YAL007C	ERP2	"Protein that forms a heterotrimeric complex with Erp1p, Emp24p, and Erv25p; member, along with Emp24p and Erv25p, of the p24 family involved in ER to Golgi transport and localized to COPII-coated vesicles"	Verified	chr1:137700-138347	137700-138347	99.0%	821.19	758.86	805.61	709.00	609.27	451.89	790.03	757.30	530.58	2.92	3.07	2.20	-0.51	-0.19	Frag>80[58,59]
YAL004W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps verified gene SSA1/YAL005C"	Dubious	chr1:140762-141409	140762-141409	34.1%	1649.72	2928.81	2051.98	2345.76	11823.73	11665.54	2289.27	2198.87	11744.63	8.45	8.93	48.66	2.42	-0.04	Frag<80[61,62,63,64,65]
YAL005C	SSA1	"ATPase involved in protein folding and nuclear localization signal (NLS)-directed nuclear transport; member of heat shock protein 70 (HSP70) family; forms a chaperone complex with Ydj1p; localized to the nucleus, cytoplasm, and cell wall"	Verified	chr1:139505-141433	139505-141433	26.9%	2946.02	5223.01	3726.86	4043.06	33156.17	19289.85	4084.51	3884.96	26223.01	15.08	15.77	108.65	2.75	2.33	Frag<80[60,61,62,63,64,65]
YAL003W	EFB1	"Translation elongation factor 1 beta; stimulates nucleotide exchange to regenerate EF-1 alpha-GTP for the next elongation cycle; part of the EF-1 complex, which facilitates binding of aminoacyl-tRNA to the ribosomal A site"	Verified	chr1:142176-143162	142176-142255,142622-143162	98.6%	8897.54	6603.35	8458.29	7401.82	12692.34	11500.34	7750.44	7930.06	12096.34	28.61	32.19	50.12	0.61	0.10	Frag>80[65,66,67,68]
YAL002W	VPS8	Membrane-associated protein that interacts with Vps21p to facilitate soluble vacuolar protein localization; component of the CORVET complex; required for localization and trafficking of the CPY sorting receptor; contains RING finger motif	Verified	chr1:143709-147533	143709-147533	99.0%	67.86	92.41	83.44	66.54	73.67	64.16	80.14	74.99	68.91	0.30	0.30	0.29	-0.12	0.21	Matched[69]
YAL001C	TFC3	Largest of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauB domain of TFIIIC that binds DNA at the BoxB promoter sites of tRNA and similar genes; cooperates with Tfc6p in DNA binding	Verified	chr1:147596-151168	147596-151008,151099-151168	99.3%	138.76	158.70	125.75	125.17	111.87	111.29	148.73	125.46	111.58	0.55	0.51	0.46	-0.17	0.18	Matched[70]
YAR002W	NUP60	"Subunit of the nuclear pore complex (NPC), functions to anchor Nup2p to the NPC in a process controlled by the nucleoplasmic concentration of Gsp1p-GTP; potential Cdc28p substrate; involved in telomere maintenance"	Verified	chr1:152259-153878	152259-153878	98.8%	254.30	249.93	253.05	246.80	126.84	121.84	252.12	249.93	124.34	0.93	1.01	0.52	-1.01	-0.41	Matched[71]
YAR002C-A	ERP1	"Protein that forms a heterotrimeric complex with Erp2p, Emp24p, and Erv25p; member, along with Emp24p and Erv25p, of the p24 family involved in ER to Golgi transport and localized to COPII-coated vesicles"	Verified	chr1:154067-154726	154067-154726	99.0%	1085.27	972.00	1008.74	1016.39	733.21	606.16	1028.64	1012.56	669.69	3.80	4.11	2.77	-0.60	-0.59	Frag>80[72,73]
YAR003W	SWD1	"Subunit of the COMPASS (Set1C) complex, which methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres; WD40 beta propeller superfamily member with similarity to mammalian Rbbp7"	Verified	chr1:155007-156287	155007-156287	98.6%	151.96	178.87	113.18	115.56	123.47	66.48	165.42	114.37	94.98	0.61	0.46	0.39	-0.27	-1.27	Matched[74]
YAR007C	RFA1	"Subunit of heterotrimeric Replication Protein A (RPA), which is a highly conserved single-stranded DNA binding protein involved in DNA replication, repair, and recombination"	Verified	chr1:156756-158621	156756-158621	99.1%	244.50	190.40	235.30	258.02	255.31	213.66	217.45	246.66	234.49	0.80	1.00	0.97	-0.07	0.27	Matched[75]
YAR008W	SEN34	"Subunit of the tRNA splicing endonuclease, which is composed of Sen2p, Sen15p, Sen34p, and Sen54p; Sen34p contains the active site for tRNA 3' splice site cleavage and has similarity to Sen2p and to Archaeal tRNA splicing endonuclease"	Verified	chr1:158967-159794	158967-159794	98.6%	129.84	97.99	101.66	74.72	33.07	15.92	113.91	88.19	24.50	0.42	0.36	0.10	-1.85	-2.12	Matched[76]
YAR014C	BUD14	"Protein involved in bud-site selection, Bud14p-Glc7p complex functions as a cortical regulator of dynein; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern"	Verified	chr1:166743-168866	166743-168866	99.2%	170.94	147.67	153.37	137.70	100.66	90.69	159.30	145.53	95.68	0.59	0.59	0.40	-0.61	-0.24	Frag>80[78,79]
YAR015W	ADE1	"N-succinyl-5-aminoimidazole-4-carboxamide ribotide (SAICAR) synthetase, required for 'de novo' purine nucleotide biosynthesis; red pigment accumulates in mutant cells deprived of adenine"	Verified	chr1:169370-170290	169370-170290	98.6%	3013.35	2268.83	2878.99	2300.77	501.12	259.92	2641.09	2589.88	380.52	9.75	10.51	1.58	-2.77	-2.35	Matched[80]
YAR018C	KIN3	Nonessential protein kinase with unknown cellular role	Verified	chr1:170391-171698	170391-171698	99.2%	122.48	102.46	114.01	104.77	136.35	98.60	112.47	109.39	117.48	0.42	0.44	0.49	0.10	0.37	
YAR019W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr1:174996-175340	174996-175340	98.5%	5.88	2.94	8.82	14.71	17.65	38.24	4.41	11.77	27.94	0.02	0.05	0.12	1.25	NaN	Overlap[81,82]
YAR019C	CDC15	Protein kinase of the Mitotic Exit Network that is localized to the spindle pole bodies at late anaphase; promotes mitotic exit by directly switching on the kinase activity of Dbf2p	Verified	chr1:172209-175133	172209-175133	98.8%	35.29	31.83	41.17	44.29	78.89	83.73	33.56	42.73	81.31	0.12	0.17	0.34	0.93	1.51	Covered/w/another[81]
YAR020C	PAU7	"Part of 23-member seripauperin multigene family, active during alcoholic fermentation, regulated by anaerobiosis, inhibited by oxygen, repressed by heme"	Verified	chr1:176854-177021	176854-177021	37.8%	15.74	94.43	31.48	31.48	110.16	78.69	55.08	31.48	94.43	0.20	0.13	0.39	1.58	1.16	Covered/w/another[84]
YAR023C		"Putative integral membrane protein, member of DUP240 gene family"	Uncharacterized	chr1:179279-179818	179279-179818	99.1%	37.38	56.07	44.86	37.38	104.67	67.29	46.73	41.12	85.98	0.17	0.17	0.36	1.06	1.35	Covered/w/another[84]
YAR027W	UIP3	Putative integral membrane protein of unknown function; interacts with Ulp1p at the nuclear periphery; member of DUP240 gene family	Verified	chr1:183764-184471	183764-184471	95.8%	257.95	346.39	344.92	365.56	937.48	613.19	302.17	355.24	775.33	1.12	1.44	3.21	1.13	1.08	Matched[86]
YAR028W		"Putative integral membrane protein, member of DUP240 gene family; GFP-fusion protein is induced in response to the DNA-damaging agent MMS"	Uncharacterized	chr1:184886-185590	184886-185590	96.1%	165.34	258.35	131.39	147.63	150.58	125.48	211.85	139.51	138.03	0.78	0.57	0.57	-0.02	0.39	Matched[87]
YAR029W		Member of DUP240 gene family but contains no transmembrane domains; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern	Uncharacterized	chr1:186315-186539	186315-186539	98.3%	67.81	135.62	49.73	31.64	140.14	58.77	101.71	40.69	99.45	0.38	0.17	0.41	1.29	2.08	Covered/w/another[88]
YAR031W	PRM9	"Pheromone-regulated protein with 3 predicted transmembrane segments and an FF sequence, a motif involved in COPII binding; member of DUP240 gene family"	Verified	chr1:186830-187726	186830-187726	62.3%	55.46	62.62	50.10	37.57	53.68	42.94	59.04	43.83	48.31	0.22	0.18	0.20	0.14	0.56	Overlap[88]
YAR030C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YAR029W and the verified gene PRM9"	Dubious	chr1:186506-186847	186506-186847	99.0%	32.49	47.26	17.72	11.82	56.12	44.31	39.88	14.77	50.22	0.15	0.06	0.21	1.77	0.47	Covered/w/another[88]
YAR033W	MST28	"Putative integral membrane protein, involved in vesicle formation; forms complex with Mst27p; member of DUP240 gene family; binds COPI and COPII vesicles"	Verified	chr1:188101-188805	188101-188805	11.5%	99.07	160.99	49.54	24.77	24.77	61.92	130.03	37.15	43.34	0.48	0.15	0.18	0.22	-0.07	
YAR035W	YAT1	"Outer mitochondrial carnitine acetyltransferase, minor ethanol-inducible enzyme involved in transport of activated acyl groups from the cytoplasm into the mitochondrial matrix; phosphorylated"	Verified	chr1:190187-192250	190187-192250	98.3%	13.31	22.19	14.79	14.30	24.65	27.12	17.75	14.55	25.89	0.07	0.06	0.11	0.83	0.59	Overlap[91]
YAR035C-A		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr1:192331-192411	192331-192411	98.9%	37.44	24.96	12.48	0.00	12.48	62.40	31.20	6.24	37.44	0.12	0.03	0.16	2.58	NaN	Covered/w/another[91]
YAR042W	SWH1	Protein similar to mammalian oxysterol-binding protein; contains ankyrin repeats; localizes to the Golgi and the nucleus-vacuole junction	Verified	chr1:192613-196179	192613-196179	98.2%	164.39	168.95	169.81	157.82	162.10	248.58	166.67	163.81	205.34	0.62	0.66	0.85	0.33	1.25	Covered/w/another[91]
YAR047C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr1:201460-201780	201460-201780	99.0%	9.44	9.44	3.15	3.15	15.74	3.15	9.44	3.15	9.44	0.03	0.01	0.04	1.58	-0.40	
YAR050W	FLO1	"Lectin-like protein involved in flocculation, cell wall protein that binds to mannose chains on the surface of other cells, confers floc-forming ability that is chymotrypsin sensitive and heat resistant; similar to Flo5p"	Verified	chr1:203394-208007	203394-208007	21.5%	18.17	21.20	20.19	10.09	9.08	10.09	19.68	15.14	9.59	0.07	0.06	0.04	-0.66	1.01	Frag<80[94]
YAR053W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr1:208358-208654	208358-208654	18.6%	0.00	18.13	0.00	0.00	0.00	18.13	9.06	0.00	9.06	0.03	0.00	0.04	Inf	0.46	
YAR060C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr1:217148-217483	217148-217483	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.64	
YAR064W		Putative protein of unknown function	Uncharacterized	chr1:220189-220488	220189-220488	4.0%	0.00	84.21	84.21	168.42	0.00	0.00	42.11	126.32	0.00	0.16	0.51	0.00	-Inf	-0.16	
YAR066W		Putative GPI protein	Uncharacterized	chr1:221040-221651	221040-221651	1.0%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.01	
YAR068W		Fungal-specific protein of unknown function; induced in respiratory-deficient cells	Uncharacterized	chr1:222397-222882	222397-222882	1.2%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	-0.06	
YAR069C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr1:224002-224295	224002-224295	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-1.12	
YAR070C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr1:224554-224853	224554-224853	11.2%	0.00	0.00	0.00	29.85	0.00	0.00	0.00	14.93	0.00	0.00	0.06	0.00	-Inf	-1.11	
YAR071W	PHO11	"One of three repressible acid phosphatases, a glycoprotein that is transported to the cell surface by the secretory pathway; induced by phosphate starvation and coordinately regulated by PHO4 and PHO2"	Verified	chr1:225451-226854	225451-226854	2.8%	450.00	175.00	250.00	250.00	0.00	75.00	312.50	250.00	37.50	1.15	1.01	0.16	-2.74	-1.88	Frag<80[95]
YAR073W	IMD1	"Nonfunctional protein with homology to IMP dehydrogenase; probable pseudogene, located close to the telomere; is not expressed at detectable levels; YAR073W and YAR075W comprise a continuous reading frame in some strains of S. cerevisiae"	Dubious	chr1:227733-228944	227733-228944	17.9%	4.62	9.24	4.62	0.00	0.00	0.00	6.93	2.31	0.00	0.03	0.01	0.00	-Inf	-2.13	
YAR075W		Non-functional protein with homology IMP dehydrogenase; YAR073W/IMD1 and YAR075W comprise a continuous reading frame in some strains of S. cerevisiae.	Dubious	chr1:228835-229308	228835-229308	37.7%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	-1.94	
YBL113W-A		"Dubious open reading frame unlikely to encode a protein; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr2:646-1128	646-1128	1.3%	155.84	0.00	155.84	0.00	0.00	0.00	77.92	77.92	0.00	0.29	0.32	0.00	-Inf	NaN	
YBL113C		Helicase-like protein encoded within the telomeric Y' element	Uncharacterized	chr2:280-2658	280-2658	3.0%	69.57	97.39	41.74	13.91	41.74	41.74	83.48	27.83	41.74	0.31	0.11	0.17	0.58	0.22	
YBL112C		Putative protein of unknown function; YBL112C is contained within TEL02L	Uncharacterized	chr2:2582-2899	2582-2899	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.05	
YBL111C		Helicase-like protein encoded within the telomeric Y' element	Uncharacterized	chr2:2907-5009	2907-4116,4216-5009	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.41	
YBL109W		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data"	Dubious	chr2:5790-6125	5790-6125	45.9%	12.97	6.48	12.97	0.00	6.48	0.00	9.72	6.48	3.24	0.04	0.03	0.01	-1.00	-0.37	
YBL108C-A		Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36.	Uncharacterized	chr2:7605-7733	7605-7733	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.67	
YBL108W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr2:8177-8482	8177-8482	50.4%	6.48	6.48	6.48	0.00	0.00	0.00	6.48	3.24	0.00	0.02	0.01	0.00	-Inf	-0.05	Frag<80[96,97,98]
YBL107W-A		Similar to TyA and TyB proteins	Dubious	chr2:9268-9372	9268-9372	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.23	
YBL107C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YBL107C is not an essential gene	Uncharacterized	chr2:9961-10551	9961-10551	99.5%	347.04	282.39	278.99	222.85	275.59	124.18	314.72	250.92	199.89	1.16	1.02	0.83	-0.33	-0.44	Matched[99]
YBL106C	SRO77	Protein with roles in exocytosis and cation homeostasis; functions in docking and fusion of post-Golgi vesicles with plasma membrane; homolog of Sro7p and Drosophila lethal giant larvae tumor suppressor; interacts with SNARE protein Sec9p	Verified	chr2:10847-13879	10847-13879	99.1%	44.23	54.88	38.58	25.94	25.28	14.30	49.55	32.26	19.79	0.18	0.13	0.08	-0.71	-0.70	Frag>80[100,101]
YBL105C	PKC1	"Protein serine/threonine kinase essential for cell wall remodeling during growth; localized to sites of polarized growth and the mother-daughter bud neck; homolog of the alpha, beta, and gamma isoforms of mammalian protein kinase C (PKC)"	Verified	chr2:14241-17696	14241-17696	99.2%	141.52	149.98	138.02	140.93	89.58	106.50	145.75	139.48	98.04	0.54	0.57	0.41	-0.51	0.01	Matched[102]
YBL104C		"Putative protein of unknown function, promoter contains multiple GCN4 binding sites"	Uncharacterized	chr2:18177-21293	18177-21293	99.2%	80.53	75.35	70.50	62.09	42.69	41.40	77.94	66.30	42.04	0.29	0.27	0.17	-0.66	0.05	Matched[103]
YBL103C	RTG3	"Basic helix-loop-helix-leucine zipper (bHLH/Zip) transcription factor that forms a complex with another bHLH/Zip protein, Rtg1p, to activate the retrograde (RTG) and TOR pathways"	Verified	chr2:22075-23535	22075-23535	98.9%	99.63	136.30	91.33	88.56	98.94	71.27	117.97	89.95	85.10	0.44	0.37	0.35	-0.08	0.13	Matched[104]
YBL102W	SFT2	"Non-essential tetra-spanning membrane protein found mostly in the late Golgi, can suppress some sed5 alleles; may be part of the transport machinery, but precise function is unknown; similar to mammalian syntaxin 5"	Verified	chr2:24098-24745	24098-24745	98.9%	513.49	594.65	554.07	461.99	948.95	613.38	554.07	508.03	781.17	2.05	2.06	3.24	0.62	0.23	Matched[105]
YBL101C	ECM21	Non-essential protein of unknown function; promoter contains several Gcn4p binding elements	Verified	chr2:24946-28299	24946-28299	98.9%	113.67	107.04	138.09	131.46	147.14	179.40	110.35	134.77	163.27	0.41	0.55	0.68	0.28	0.84	Matched[106]
YBL100W-C		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr2:28427-28546	28427-28546	98.4%	25.41	33.89	8.47	33.89	59.30	42.36	29.65	21.18	50.83	0.11	0.09	0.21	1.26	NaN	Covered/w/another[106]
YBL099W	ATP1	"Alpha subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis; phosphorylated"	Verified	chr2:37050-38687	37050-38687	98.7%	2333.02	2605.16	2390.54	2794.42	2108.50	2571.76	2469.09	2592.48	2340.13	9.11	10.52	9.70	-0.15	-0.40	Matched[107]
YBL100C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; almost completely overlaps the 5' end of ATP1"	Dubious	chr2:36986-37300	36986-37300	98.6%	1149.30	1487.32	1329.58	1664.39	1033.40	1686.92	1318.31	1496.98	1360.16	4.87	6.08	5.64	-0.14	0.07	Covered/w/another[107]
YBL098W	BNA4	"Kynurenine 3-mono oxygenase, required for biosynthesis of nicotinic acid from tryptophan via kynurenine pathway"	Verified	chr2:39142-40524	39142-40524	98.9%	206.89	210.55	188.61	163.03	100.89	57.02	208.72	175.82	78.95	0.77	0.71	0.33	-1.16	-1.14	Matched[108]
YBL097W	BRN1	"Essential protein required for chromosome condensation, likely to function as an intrinsic component of the condensation machinery, may influence multiple aspects of chromosome transmission and dynamics"	Verified	chr2:40828-43092	40828-43092	98.4%	46.65	35.89	30.95	35.44	13.46	27.81	41.27	33.19	20.63	0.15	0.13	0.09	-0.69	0.18	Matched[109]
YBL095W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr2:43274-44086	43274-44086	98.4%	152.55	137.54	156.30	101.28	191.31	133.79	145.05	128.79	162.55	0.54	0.52	0.67	0.34	0.33	Covered/w/another[110]
YBL096C		Non-essential protein of unknown function	Dubious	chr2:43171-43479	43171-43479	98.2%	102.13	52.71	115.31	56.01	118.60	65.89	77.42	85.66	92.24	0.29	0.35	0.38	0.11	0.19	Covered/w/another[110]
YBL094C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized ORF YBL095W"	Dubious	chr2:43762-44094	43762-44094	98.6%	203.98	188.76	179.63	121.78	210.07	164.40	196.37	150.70	187.24	0.72	0.61	0.78	0.31	0.10	Covered/w/another[110]
YBL093C	ROX3	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme	Verified	chr2:44253-44915	44253-44915	99.1%	249.70	278.63	237.52	216.20	214.68	115.71	264.16	226.86	165.20	0.98	0.92	0.68	-0.46	-0.25	Covered/w/another[110]
YBL092W	RPL32	"Protein component of the large (60S) ribosomal subunit, has similarity to rat L32 ribosomal protein; overexpression disrupts telomeric silencing"	Verified	chr2:45641-46367	45641-45642,45975-46367	98.7%	13871.91	11583.02	12753.13	11008.23	3818.24	2897.04	12727.47	11880.68	3357.64	46.98	48.23	13.91	-1.82	-1.86	Matched[111]
YBL091C-A	SCS22	Protein involved in regulation of phospholipid metabolism; homolog of Scs2p; similar to D. melanogaster inturned protein	Verified	chr2:46562-47177	46562-47055,47144-47177	99.0%	214.35	275.60	214.35	183.73	311.96	166.51	244.98	199.04	239.23	0.90	0.81	0.99	0.27	-0.40	Matched[112]
YBL091C	MAP2	"Methionine aminopeptidase, catalyzes the cotranslational removal of N-terminal methionine from nascent polypeptides; function is partially redundant with that of Map1p"	Verified	chr2:47360-48625	47360-48625	98.8%	699.39	763.34	681.81	673.02	728.97	581.90	731.37	677.41	655.43	2.70	2.75	2.72	-0.05	0.15	Matched[113]
YBL090W	MRP21	Mitochondrial ribosomal protein of the large subunit; MRP21 exhibits genetic interactions with mutations in the COX2 and COX3 mRNA 5'-untranslated leader sequences	Verified	chr2:48822-49355	48822-49355	98.5%	294.70	247.17	269.98	287.09	361.25	199.64	270.93	278.54	280.44	1.00	1.13	1.16	0.01	-0.47	Matched[114]
YBL089W	AVT5	"Putative transporter, member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters"	Verified	chr2:49571-50950	49571-50950	99.0%	89.99	104.62	103.89	78.28	84.87	53.41	97.31	91.09	69.14	0.36	0.37	0.29	-0.40	-0.42	Covered[115]
YBL088C	TEL1	Protein kinase primarily involved in telomere length regulation; contributes to cell cycle checkpoint control in response to DNA damage; functionally redundant with Mec1p; homolog of human ataxia telangiectasia (ATM) gene	Verified	chr2:51016-59379	51016-59379	99.2%	39.91	49.92	30.63	28.34	15.68	24.24	44.92	29.48	19.96	0.17	0.12	0.08	-0.56	-0.26	Overlap[115]
YBL087C	RPL23A	"Protein component of the large (60S) ribosomal subunit, identical to Rpl23Bp and has similarity to E. coli L14 and rat L23 ribosomal proteins"	Verified	chr2:59818-60735	59818-60189,60694-60735	60.9%	4777.78	4313.49	4698.41	4170.64	1309.52	1170.64	4545.64	4434.52	1240.08	16.78	18.00	5.14	-1.84	-1.86	Matched[116]
YBL086C		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery	Uncharacterized	chr2:61199-62599	61199-62599	99.2%	119.45	123.05	141.04	156.87	267.69	238.19	121.25	148.96	252.94	0.45	0.60	1.05	0.76	1.13	Matched[117]
YBL085W	BOI1	"Protein implicated in polar growth, functionally redundant with Boi2p; interacts with bud-emergence protein Bem1p; contains an SH3 (src homology 3) domain and a PH (pleckstrin homology) domain"	Verified	chr2:63873-66815	63873-66815	98.5%	243.45	245.18	265.52	239.31	233.80	220.35	244.31	252.42	227.07	0.90	1.02	0.94	-0.15	0.36	Matched[119]
YBL084C	CDC27	"Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition"	Verified	chr2:67166-69442	67166-69442	96.7%	80.38	64.48	65.39	74.93	133.96	105.81	72.43	70.16	119.89	0.27	0.28	0.50	0.77	0.45	Matched[120]
YBL083C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps verified ORF ALG3"	Dubious	chr2:69710-70135	69710-70135	97.8%	244.85	196.84	196.84	187.24	62.41	64.81	220.84	192.04	63.61	0.82	0.78	0.26	-1.59	-0.95	Covered/w/another[121]
YBL082C	ALG3	"Dolichol-P-Man dependent alpha(1-3) mannosyltransferase, involved in the synthesis of dolichol-linked oligosaccharide donor for N-linked glycosylation of proteins"	Verified	chr2:69748-71124	69748-71124	98.3%	183.21	161.79	157.36	155.14	53.93	48.76	172.50	156.25	51.34	0.64	0.63	0.21	-1.61	-1.06	Matched[121]
YBL081W		Non-essential protein of unknown function	Uncharacterized	chr2:71863-72969	71863-72969	96.1%	222.72	149.42	169.15	123.11	41.35	39.47	186.07	146.13	40.41	0.69	0.59	0.17	-1.85	-1.08	Matched[122]
YBL080C	PET112	Protein required for mitochondrial translation; mutation is functionally complemented by a Bacillus subtilis ortholog	Verified	chr2:73067-74692	73067-74692	99.1%	53.36	53.98	52.74	52.74	90.59	51.50	53.67	52.74	71.04	0.20	0.21	0.29	0.43	0.69	Matched[123]
YBL079W	NUP170	"Abundant subunit of the nuclear pore complex (NPC), required for proper localization of specific nucleoporins within the NPC, involved in nuclear envelope permeability and in chromosome segregation, has similarity to Nup157p"	Verified	chr2:75256-79764	75256-79764	99.0%	133.51	115.59	116.49	103.05	45.25	67.65	124.55	109.77	56.45	0.46	0.45	0.23	-0.96	-0.39	Matched[124]
YBL078C	ATG8	"Protein required for autophagy; modified by the serial action of Atg4p, Atg7p, and Atg3p, and conjugated at the C terminus with phosphatidylethanolamine, to become the form essential for generation of autophagosomes"	Verified	chr2:80375-80728	80375-80728	99.1%	228.14	327.95	327.95	265.21	1770.91	1117.87	278.04	296.58	1444.39	1.03	1.20	5.98	2.28	1.83	Matched[125]
YBL077W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene ILS1/YBL076C"	Dubious	chr2:80895-81326	80895-81326	99.4%	1804.77	1434.50	1504.37	1339.03	409.86	200.27	1619.64	1421.70	305.07	5.98	5.77	1.26	-2.22	-1.01	Matched[126]
YBL076C	ILS1	"Cytoplasmic isoleucine-tRNA synthetase, target of the G1-specific inhibitor reveromycin A"	Verified	chr2:81041-84259	81041-84259	99.0%	1050.82	941.28	982.08	955.09	182.67	167.60	996.05	968.59	175.14	3.68	3.93	0.73	-2.47	-1.70	Frag>80[126,127,128,129]
YBL075C	SSA3	ATPase involved in protein folding and the response to stress; plays a role in SRP-dependent cotranslational protein-membrane targeting and translocation; member of the heat shock protein 70 (HSP70) family; localized to the cytoplasm	Verified	chr2:84497-86446	84497-86446	99.0%	53.85	74.04	52.81	53.33	1330.08	1422.76	63.94	53.07	1376.42	0.24	0.22	5.70	4.70	4.53	Frag>80[129,130]
YBL073W		Hypothetical protein; open reading frame overlaps 5' end of essential AAR2 gene encoding a component of the U5 snRNP required for splicing of U3 precursors	Dubious	chr2:87644-87955	87644-87955	99.0%	19.43	22.67	12.95	16.19	6.48	35.62	21.05	14.57	21.05	0.08	0.06	0.09	0.53	0.62	Overlap[131]
YBL074C	AAR2	"Component of the U5 snRNP, required for splicing of U3 precursors; originally described as a splicing factor specifically required for splicing pre-mRNA of the MATa1 cistron"	Verified	chr2:86720-87787	86720-87787	99.2%	35.87	37.76	23.60	18.88	27.37	52.86	36.81	21.24	40.11	0.14	0.09	0.17	0.92	1.68	Matched[131]
YBL072C	RPS8A	Protein component of the small (40S) ribosomal subunit; identical to Rps8Bp and has similarity to rat S8 ribosomal protein	Verified	chr2:88521-89439	88521-89130,89438-89439	21.4%	8492.19	7497.61	7765.38	7688.88	2027.41	2409.95	7994.90	7727.13	2218.68	29.51	31.37	9.19	-1.80	-3.24	Frag<80[132,133]
YBL071C-B		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr2:89456-89554	89456-89554	98.9%	40.85	40.85	10.21	10.21	0.00	10.21	40.85	10.21	5.11	0.15	0.04	0.02	-1.00	NaN	Matched[133]
YBL071W-A	KTI11	"Protein required for synthesis of diphthamide, a modified histidine residue of translation elongation factor 2; functions with Dph1p, Dph2p, Jjj3p, and Dph5p; required, with Elongator complex, for modification of wobble nucleosides in tRNA"	Verified	chr2:89976-90224	89976-90224	98.6%	175.21	114.09	69.27	81.49	73.34	32.60	144.65	75.38	52.97	0.53	0.31	0.22	-0.51	-0.37	Covered/w/another[134]
YBL071C		"Dubious open reading frame, predicted protein contains a peroxisomal targeting signal"	Dubious	chr2:90221-90529	90221-90529	99.0%	130.77	134.04	120.96	55.58	35.96	35.96	132.41	88.27	35.96	0.49	0.36	0.15	-1.30	-0.62	Covered/w/another[134]
YBL069W	AST1	"Peripheral membrane protein that interacts with the plasma membrane ATPase Pma1p and has a role in its targeting to the plasma membrane, possibly by influencing its incorporation into lipid rafts"	Verified	chr2:90739-92028	90739-92028	98.7%	117.79	139.77	114.64	95.01	69.10	62.82	128.78	104.83	65.96	0.48	0.43	0.27	-0.67	-0.35	Covered/w/another[134]
YBL070C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr2:90603-90923	90603-90923	98.9%	63.03	100.84	72.48	63.03	25.21	37.82	81.93	67.75	31.51	0.30	0.28	0.13	-1.10	-0.25	Covered/w/another[134]
YBL068W-A		Dubious open reading frame unlikely to encode a protein; identified by fungal homology and RT-PCR	Dubious	chr2:91792-92028	91792-92028	98.9%	200.46	166.34	149.28	123.69	140.75	72.51	183.40	136.48	106.63	0.68	0.55	0.44	-0.36	NaN	Covered/w/another[134]
YBL068W	PRS4	"5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of five related enzymes, which are active as heteromultimeric complexes"	Verified	chr2:92412-93395	92412-93395	98.7%	225.39	153.34	167.75	125.56	39.11	22.64	189.37	146.66	30.87	0.70	0.60	0.13	-2.25	-1.94	Covered/w/another[135]
YBL067C	UBP13	"Putative ubiquitin carboxyl-terminal hydrolase, ubiquitin-specific protease that cleaves ubiquitin-protein fusions"	Verified	chr2:93641-95884	93641-95884	99.2%	154.05	137.43	117.22	104.20	87.13	92.52	145.74	110.71	89.82	0.54	0.45	0.37	-0.30	-0.15	Covered/w/another[135]
YBL065W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified ORF SEF1/YBL066C; YBL065W is a non-essential gene"	Dubious	chr2:99965-100309	99965-100309	98.8%	8.80	32.27	20.54	8.80	46.94	26.41	20.54	14.67	36.67	0.08	0.06	0.15	1.32	0.76	Overlap[136,137]
YBL066C	SEF1	"Putative transcription factor, has homolog in Kluyveromyces lactis"	Verified	chr2:96671-100117	96671-100117	98.8%	40.83	50.52	39.65	45.53	26.14	39.07	45.67	42.59	32.60	0.17	0.17	0.14	-0.39	0.51	Matched[136]
YBL064C	PRX1	"Mitochondrial peroxiredoxin (1-Cys Prx) with thioredoxin peroxidase activity, has a role in reduction of hydroperoxides; induced during respiratory growth and under conditions of oxidative stress; phosphorylated"	Verified	chr2:100373-101158	100373-101158	98.9%	477.27	657.38	670.24	626.50	2607.63	1981.13	567.32	648.37	2294.38	2.09	2.63	9.51	1.82	2.07	Matched[137]
YBL063W	KIP1	Kinesin-related motor protein required for mitotic spindle assembly and chromosome segregation; functionally redundant with Cin8p	Verified	chr2:101888-105223	101888-105223	99.0%	69.96	74.81	58.76	54.82	58.15	42.10	72.39	56.79	50.13	0.27	0.23	0.21	-0.18	-0.20	Matched[138]
YBL062W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr2:105310-105690	105310-105690	99.4%	422.30	411.75	417.02	332.56	353.68	248.10	417.02	374.79	300.89	1.54	1.52	1.25	-0.32	-0.35	Covered/w/another[139]
YBL061C	SKT5	"Activator of Chs3p (chitin synthase III), recruits Chs3p to the bud neck via interaction with Bni4p; has similarity to Shc1p, which activates Chs3p during sporulation"	Verified	chr2:105318-107408	105318-107408	99.2%	263.24	256.49	228.04	211.17	174.05	178.38	259.86	219.61	176.22	0.96	0.89	0.73	-0.32	-0.23	Matched[139]
YBL060W	YEL1	Guanine nucleotide exchange factor specific for Arf3p; localized to the bud neck and tip; required for localization of Arf3p to the bud neck and tip	Uncharacterized	chr2:107934-109997	107934-109997	98.7%	66.25	70.17	64.78	44.66	61.83	31.41	68.21	54.72	46.62	0.25	0.22	0.19	-0.23	0.15	Matched[140]
YBL059C-A		Putative protein of unknown function; contains twin Cx9C motifs that can form coiled coil-helix-coiled-coil helix fold; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus	Uncharacterized	chr2:110127-110541	110127-110422,110508-110541	99.3%	332.49	271.48	305.03	219.62	549.06	289.78	301.98	262.33	419.42	1.11	1.06	1.74	0.68	0.24	Matched[141]
YBL059W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr2:110596-111246	110596-110881,110951-111246	98.5%	62.77	74.97	76.72	52.31	99.38	27.90	68.87	64.51	63.64	0.25	0.26	0.26	-0.02	-0.15	Matched[142]
YBL058W	SHP1	UBX (ubiquitin regulatory X) domain-containing protein that regulates Glc7p phosphatase activity and interacts with Cdc48p; interacts with ubiquitylated proteins in vivo and is required for degradation of a ubiquitylated model substrate	Verified	chr2:111439-112710	111439-112710	98.3%	423.21	421.61	527.22	480.02	796.03	715.22	422.41	503.62	755.63	1.56	2.04	3.13	0.59	0.93	Matched[143]
YBL057C	PTH2	One of two (see also PTH1) mitochondrially-localized peptidyl-tRNA hydrolases; negatively regulates the ubiquitin-proteasome pathway via interactions with ubiquitin-like ubiquitin-associated proteins; dispensable for cell growth	Verified	chr2:112803-113447	112803-113447	99.1%	267.48	231.51	237.76	181.45	312.85	176.76	249.49	209.61	244.80	0.92	0.85	1.01	0.22	0.15	Matched[144]
YBL056W	PTC3	Type 2C protein phosphatase; dephosphorylates Hog1p (see also Ptc2p) to limit maximal kinase activity induced by osmotic stress; dephosphorylates T169 phosphorylated Cdc28p (see also Ptc2p); role in DNA checkpoint inactivation	Verified	chr2:113765-115171	113765-115171	98.7%	959.11	991.51	910.86	904.38	1071.43	707.81	975.31	907.62	889.62	3.60	3.68	3.69	-0.03	-0.06	Matched[145]
YBL055C		3'-->5' exonuclease and endonuclease with a possible role in apoptosis; has similarity to mammalian and C. elegans apoptotic nucleases	Verified	chr2:115576-116832	115576-116832	99.1%	138.01	123.57	97.89	85.85	48.95	33.70	130.79	91.87	41.32	0.48	0.37	0.17	-1.15	-0.75	Matched[146]
YBL054W		Protein of unknown function involved in rRNA and ribosome biosynthesis	Uncharacterized	chr2:117592-119169	117592-119169	98.8%	85.98	42.35	23.74	15.40	10.27	3.85	64.16	19.57	7.06	0.24	0.08	0.03	-1.47	-1.27	Frag<80[147]
YBL053W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr2:119338-119712	119338-119712	99.7%	318.15	248.64	307.45	245.96	165.76	64.16	283.39	276.71	114.96	1.05	1.12	0.48	-1.27	-0.60	Covered/w/another[148]
YBL052C	SAS3	"Histone acetyltransferase catalytic subunit of NuA3 complex that acetylates histone H3, involved in transcriptional silencing; homolog of the mammalian MOZ proto-oncogene; sas3 gcn5 double mutation confers lethality"	Verified	chr2:119382-121877	119382-121877	99.4%	227.43	178.23	189.53	171.38	88.71	57.26	202.83	180.45	72.99	0.75	0.73	0.30	-1.31	-1.25	Matched[148]
YBL051C	PIN4	"Protein involved in G2/M phase progression and response to DNA damage, interacts with Rad53p; contains an RNA recognition motif, a nuclear localization signal, and several SQ/TQ cluster domains; hyperphosphorylated in response to DNA damage"	Verified	chr2:122756-124762	122756-124762	98.8%	962.68	972.26	817.95	887.04	511.85	585.48	967.47	852.50	548.66	3.57	3.46	2.27	-0.64	-0.00	Matched[150]
YBL050W	SEC17	"Peripheral membrane protein required for vesicular transport between ER and Golgi and for the 'priming' step in homotypic vacuole fusion, part of the cis-SNARE complex; has similarity to alpha-SNAP"	Verified	chr2:125128-126122	125128-125157,125274-126122	98.5%	474.69	495.48	518.58	490.86	786.53	579.79	485.08	504.72	683.16	1.79	2.05	2.83	0.44	0.52	Matched[151]
YBL049W	MOH1	"Protein of unknown function, has homology to kinase Snf7p; not required for growth on nonfermentable carbon sources; essential for viability in stationary phase"	Verified	chr2:126831-127247	126831-127247	98.8%	67.97	128.67	46.13	70.40	121.38	104.39	98.32	58.26	112.89	0.36	0.24	0.47	0.95	1.62	Matched[152]
YBL048W		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data"	Dubious	chr2:127302-127613	127302-127613	99.5%	67.62	74.06	48.30	54.74	103.05	80.50	70.84	51.52	91.78	0.26	0.21	0.38	0.83	0.86	Covered/w/another[152]
YBL047C	EDE1	"Key endocytic protein involved in a network of interactions with other endocytic proteins, binds membranes in a ubiquitin-dependent manner, may also bind ubiquitinated membrane-associated proteins"	Verified	chr2:127898-132043	127898-132043	98.9%	306.02	362.10	350.40	356.74	255.79	385.02	334.06	353.57	320.40	1.23	1.44	1.33	-0.14	0.77	Frag>80[153,154]
YBL046W	PSY4	Putative regulatory subunit of an evolutionarily conserved protein phosphatase complex containing the catalytic subunit Pph3p and a third subunit Psy2p; required for cisplatin resistance; GFP-fusion protein localizes to the nucleus	Verified	chr2:132427-133752	132427-133752	98.2%	117.50	76.03	91.39	96.77	109.82	108.29	96.77	94.08	109.06	0.36	0.38	0.45	0.21	0.55	Matched[155]
YBL045C	COR1	"Core subunit of the ubiquinol-cytochrome c reductase complex (bc1 complex), which is a component of the mitochondrial inner membrane electron transport chain"	Verified	chr2:134146-135519	134146-135519	98.8%	939.57	969.79	1018.42	1302.87	1463.52	1551.22	954.68	1160.65	1507.37	3.52	4.71	6.25	0.38	0.61	Matched[156]
YBL044W		Putative protein of unknown function; YBL044W is not an essential protein	Uncharacterized	chr2:136001-136369	136001-136369	98.2%	5.52	2.76	0.00	5.52	5.52	16.56	4.14	2.76	11.04	0.02	0.01	0.05	2.00	-0.37	
YBL043W	ECM13	Non-essential protein of unknown function	Verified	chr2:136691-137464	136691-137464	98.5%	6.56	20.98	5.24	9.18	7.87	11.80	13.77	7.21	9.83	0.05	0.03	0.04	0.45	-0.21	
YBL042C	FUI1	"High affinity uridine permease, localized to the plasma membrane; not involved in uracil transport"	Verified	chr2:138344-140263	138344-140263	98.8%	356.75	491.12	317.75	319.33	41.63	27.40	423.93	318.54	34.52	1.56	1.29	0.14	-3.21	-3.35	Frag>80[157,158]
YBL041W	PRE7	20S proteasome beta-type subunit	Verified	chr2:141250-141975	141250-141975	98.6%	835.63	871.97	887.34	730.83	1551.09	994.93	853.80	809.08	1273.01	3.15	3.28	5.27	0.65	0.56	Matched[160]
YBL040C	ERD2	"HDEL receptor, an integral membrane protein that binds to the HDEL motif in proteins destined for retention in the endoplasmic reticulum; has a role in maintenance of normal levels of ER-resident proteins"	Verified	chr2:142115-142871	142115-142752,142850-142871	99.0%	682.30	544.62	582.87	501.78	1252.93	616.52	613.46	542.33	934.73	2.26	2.20	3.87	0.79	-0.24	Frag>80[161]
YBL039W-B		Putative protein of unknown function	Uncharacterized	chr2:143396-143575	143396-143575	99.1%	173.87	145.83	201.92	179.48	431.88	252.40	159.85	190.70	342.14	0.59	0.77	1.42	0.84	NaN	Covered/w/another[162]
YBL039C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified ORF URA7; identified by expression profiling and mass spectrometry"	Dubious	chr2:144951-145034	144951-145034	98.9%	433.52	192.67	264.93	168.59	12.04	36.13	313.10	216.76	24.08	1.16	0.88	0.10	-3.17	NaN	Covered/w/another[162]
YBL039C	URA7	"Major CTP synthase isozyme (see also URA8), catalyzes the ATP-dependent transfer of the amide nitrogen from glutamine to UTP, forming CTP, the final step in de novo biosynthesis of pyrimidines; involved in phospholipid biosynthesis"	Verified	chr2:143992-145731	143992-145731	99.1%	521.17	227.25	301.46	249.86	22.03	6.38	374.21	275.66	14.20	1.38	1.12	0.06	-4.28	-3.91	Covered/w/another[162]
YBL038W	MRPL16	Mitochondrial ribosomal protein of the large subunit	Verified	chr2:146190-146888	146190-146888	98.4%	308.16	334.32	356.13	364.85	421.54	266.00	321.24	360.49	343.77	1.19	1.46	1.42	-0.07	-0.21	Covered/w/another[162]
YBL037W	APL3	"Alpha-adaptin, large subunit of the clathrin associated protein complex (AP-2); involved in vesicle mediated transport"	Verified	chr2:147212-150289	147212-150289	99.0%	88.27	83.02	78.75	74.48	62.67	46.59	85.64	76.62	54.63	0.32	0.31	0.23	-0.49	-0.50	Matched[163]
YBL036C		"Single-domain racemase, possibly non-specific due to the lack of the second domain, which presumably determines specificity; GFP-fusion protein expression is induced in response to the DNA-damaging agent MMS"	Verified	chr2:150450-151223	150450-151223	99.4%	419.98	354.97	365.37	297.76	399.18	274.35	387.47	331.56	336.76	1.43	1.35	1.40	0.02	-0.29	Matched[164]
YBL035C	POL12	"B subunit of DNA polymerase alpha-primase complex, required for initiation of DNA replication during mitotic and premeiotic DNA synthesis; also functions in telomere capping and length regulation"	Verified	chr2:151496-153613	151496-153613	98.9%	118.37	94.98	91.17	75.41	20.05	11.46	106.68	83.29	15.75	0.39	0.34	0.07	-2.40	-1.53	Matched[165]
YBL034C	STU1	Component of the mitotic spindle that binds to interpolar microtubules via its association with beta-tubulin (Tub2p); required for interpolar microtubules to provide an outward force on the spindle poles	Verified	chr2:153851-158392	153851-158392	99.1%	45.75	45.08	42.64	42.42	27.54	34.42	45.42	42.53	30.98	0.17	0.17	0.13	-0.46	0.14	Frag>80[166,167]
YBL033C	RIB1	GTP cyclohydrolase II; catalyzes the first step of the riboflavin biosynthesis pathway	Verified	chr2:158659-159696	158659-159696	98.9%	158.81	196.81	174.40	177.32	238.70	181.22	177.81	175.86	209.96	0.66	0.71	0.87	0.26	0.60	Frag>80[167,168]
YBL032W	HEK2	RNA binding protein with similarity to hnRNP-K that localizes to the cytoplasm and to subtelomeric DNA; required for the proper localization of ASH1 mRNA; involved in the regulation of telomere position effect and telomere length	Verified	chr2:160187-161332	160187-161332	98.4%	595.77	533.71	604.63	539.03	376.79	275.72	564.74	571.83	326.25	2.08	2.32	1.35	-0.81	-0.74	Matched[169]
YBL031W	SHE1	Cytoskeletal protein of unknown function; overexpression causes growth arrest	Verified	chr2:161702-162718	161702-162718	98.9%	108.39	99.44	73.59	81.54	80.55	50.71	103.92	77.56	65.63	0.38	0.31	0.27	-0.24	-0.06	Matched[170]
YBL030C	PET9	"Major ADP/ATP carrier of the mitochondrial inner membrane, exchanges cytosolic ADP for mitochondrially synthesized ATP; phosphorylated; required for viability in many common lab strains carrying a mutation in the polymorphic SAL1 gene"	Verified	chr2:163044-164000	163044-164000	98.7%	1967.46	1760.02	2417.25	2823.65	2525.20	1973.81	1863.74	2620.45	2249.50	6.88	10.64	9.32	-0.22	-0.95	Matched[172]
YBL029C-A		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery; has potential orthologs in Saccharomyces species and in Yarrowia lipolytica	Uncharacterized	chr2:164491-164775	164491-164775	98.8%	234.35	209.50	344.43	284.07	766.98	390.59	221.93	314.25	578.78	0.82	1.28	2.40	0.88	0.66	Matched[174]
YBL029W		Non-essential protein of unknown function	Uncharacterized	chr2:166137-167267	166137-167267	97.4%	149.85	168.02	129.87	108.08	79.01	67.21	158.93	118.97	73.11	0.59	0.48	0.30	-0.70	-1.04	Matched[176]
YBL028C		Protein of unknown function that may interact with ribosomes; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus; predicted to be involved in ribosome biogenesis	Verified	chr2:167521-167841	167521-167841	99.6%	581.93	240.91	287.84	334.77	28.16	18.77	411.42	311.30	23.46	1.52	1.26	0.10	-3.73	-4.38	Covered/w/another[176]
YBL027W	RPL19B	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl19Ap and has similarity to rat L19 ribosomal protein; rpl19a and rpl19b single null mutations result in slow growth, while the double null mutation is lethal"	Verified	chr2:168426-169379	168426-168427,168812-169379	65.8%	8229.33	6933.33	7453.33	6074.67	1168.00	1061.33	7581.33	6764.00	1114.67	27.99	27.46	4.62	-2.60	-3.50	Matched[177]
YBL026W	LSM2	"Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA"	Verified	chr2:170626-171041	170626-170679,170808-171041	98.7%	707.44	608.89	591.29	612.41	471.62	232.29	658.16	601.85	351.96	2.43	2.44	1.46	-0.77	-1.36	Frag>80[179,180]
YBL025W	RRN10	"Protein involved in promoting high level transcription of rDNA, subunit of UAF (upstream activation factor) for RNA polymerase I"	Verified	chr2:171484-171921	171484-171921	98.4%	120.64	85.84	85.84	83.52	69.60	44.08	103.24	84.68	56.84	0.38	0.34	0.24	-0.58	-0.19	Covered/w/another[181]
YBL024W	NCL1	"S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase, methylates cytosine to m5C at several positions in tRNAs and intron-containing pre-tRNAs; similar to Nop2p and human proliferation associated nucleolar protein p120"	Verified	chr2:172537-174591	172537-174591	98.7%	481.03	315.43	379.00	316.90	85.26	42.88	398.23	347.95	64.07	1.47	1.41	0.27	-2.44	-2.23	Covered/w/another[181]
YBL023C	MCM2	Protein involved in DNA replication; component of the Mcm2-7 hexameric complex that binds chromatin as a part of the pre-replicative complex	Verified	chr2:174923-177529	174923-177529	99.1%	90.61	81.70	78.60	73.96	69.70	65.05	86.15	76.28	67.37	0.32	0.31	0.28	-0.18	0.25	Matched[182]
YBL022C	PIM1	"ATP-dependent Lon protease, involved in degradation of misfolded proteins in mitochondria; required for biogenesis and maintenance of mitochondria"	Verified	chr2:177877-181278	177877-181278	99.1%	259.82	211.47	248.84	225.71	277.61	297.19	235.65	237.28	287.40	0.87	0.96	1.19	0.28	0.98	Matched[183]
YBL021C	HAP3	"Subunit of the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression; contains sequences contributing to both complex assembly and DNA binding"	Verified	chr2:181663-182097	181663-182097	99.1%	120.67	88.18	118.35	85.86	113.71	64.98	104.43	102.11	89.34	0.39	0.41	0.37	-0.19	-0.48	Covered/w/another[184]
YBL020W	RFT1	"Flippase, essential integral membrane protein that is required for translocation of Man5GlcNac2-PP-Dol from the cytoplasmic side to the lumenal side of the ER membrane; mutation is suppressed by expression human p53 protein"	Verified	chr2:182404-184128	182404-184128	99.1%	142.22	127.00	112.96	117.05	62.04	45.65	134.61	115.00	53.84	0.50	0.47	0.22	-1.09	-0.81	Covered/w/another[184]
YBL019W	APN2	Class II abasic (AP) endonuclease involved in repair of DNA damage; homolog of human HAP1 and E. coli exoIII	Verified	chr2:184356-185918	184356-185918	98.7%	49.91	83.62	53.16	48.62	110.20	84.92	66.77	50.89	97.56	0.25	0.21	0.40	0.94	0.43	Covered/w/another[184]
YBL018C	POP8	"Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends"	Verified	chr2:186001-186477	186001-186355,186431-186477	99.3%	195.49	125.31	162.91	140.35	82.71	7.52	160.40	151.63	45.11	0.59	0.62	0.19	-1.75	-1.97	Covered/w/another[184]
YBL017C	PEP1	Type I transmembrane sorting receptor for multiple vacuolar hydrolases; cycles between the late-Golgi and prevacuolar endosome-like compartments	Verified	chr2:186847-191586	186847-191586	95.9%	257.05	313.83	257.05	239.67	114.22	147.45	285.44	248.36	130.84	1.05	1.01	0.54	-0.92	0.01	Frag<80[185]
YBL016W	FUS3	"Mitogen-activated serine/threonine protein kinase involved in mating; phosphoactivatd by Ste7p; substrates include Ste12p, Far1p, Bni1p, Sst2p; inhibits invasive growth during mating by phosphorylating Tec1p, promoting its degradation"	Verified	chr2:192454-193515	192454-193515	98.6%	363.71	378.98	351.30	290.20	103.10	65.87	371.35	320.75	84.48	1.37	1.30	0.35	-1.92	-1.50	Matched[187]
YBL015W	ACH1	"Acetyl-coA hydrolase, primarily localized to mitochondria; phosphorylated; required for acetate utilization and for diploid pseudohyphal growth"	Verified	chr2:194125-195705	194125-195705	98.5%	115.61	153.50	145.15	177.91	581.25	454.72	134.55	161.53	517.98	0.50	0.66	2.15	1.68	1.79	Matched[188]
YBL014C	RRN6	"Protein involved in the transcription of 35S rRNA genes by RNA polymerase I; component of the core factor (CF) complex also composed of Rrn11p, Rrn7p and TATA-binding protein"	Verified	chr2:199067-201751	199067-201751	99.1%	87.93	62.00	54.86	56.74	46.97	34.57	74.97	55.80	40.77	0.28	0.23	0.17	-0.45	-0.26	Matched[190]
YBL013W	FMT1	"Methionyl-tRNA formyltransferase, catalyzes the formylation of initiator Met-tRNA in mitochondria; potential Cdc28p substrate"	Verified	chr2:202059-203264	202059-203264	98.4%	16.85	21.06	15.16	22.74	14.32	24.43	18.95	18.95	19.37	0.07	0.08	0.08	0.03	1.12	Overlap[191]
YBL011W	SCT1	"Glycerol 3-phosphate/dihydroxyacetone phosphate dual substrate-specific sn-1 acyltransferase of the glycerolipid biosynthesis pathway, prefers 16-carbon fatty acids, similar to Gpt2p, gene is constitutively transcribed"	Verified	chr2:203541-205820	203541-205820	98.1%	226.33	250.48	220.07	199.49	242.88	258.98	238.41	209.78	250.93	0.88	0.85	1.04	0.26	0.43	Matched[191]
YBL012C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr2:203409-203810	203409-203810	98.6%	98.41	141.31	113.55	111.03	93.37	143.83	119.86	112.29	118.60	0.44	0.46	0.49	0.08	0.08	Covered/w/another[191]
YBL010C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein colocalizes with clathrin-coated vesicles	Uncharacterized	chr2:206110-206952	206110-206952	99.3%	133.74	102.70	91.95	94.34	75.23	76.43	118.22	93.14	75.83	0.44	0.38	0.31	-0.30	-0.16	Matched[192]
YBL009W	ALK2	Protein kinase; accumulation and phosphorylation are periodic during the cell cycle; phosphorylated in response to DNA damage; contains characteristic motifs for degradation via the APC pathway; similar to Alk1p and to mammalian haspins	Verified	chr2:207197-209227	207197-209227	99.0%	115.93	99.01	102.99	83.09	27.86	16.92	107.47	93.04	22.39	0.40	0.38	0.09	-2.06	-1.23	Matched[193]
YBL008W-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr2:209412-209651	209412-209651	99.1%	8.40	4.20	4.20	4.20	8.40	8.40	6.30	4.20	8.40	0.02	0.02	0.03	1.00	NaN	Overlap[194]
YBL008W	HIR1	"Non-essential transcriptional corepressor involved in the cell cycle-regulated transcription of histone H2A, H2B, H3 and H4 genes; contributes to nucleosome formation, heterochromatic gene silencing, and formation of functional kinetochores"	Verified	chr2:209656-212178	209656-212178	98.7%	54.61	46.58	48.18	34.13	38.95	22.89	50.59	41.16	30.92	0.19	0.17	0.13	-0.41	0.04	Matched[194]
YBL007C	SLA1	Cytoskeletal protein binding protein required for assembly of the cortical actin cytoskeleton; interacts with proteins regulating actin dynamics and proteins required for endocytosis; found in the nucleus and cell cortex; has 3 SH3 domains	Verified	chr2:212635-216369	212635-216369	98.8%	267.19	305.40	288.87	278.03	301.33	400.24	286.29	283.45	350.79	1.06	1.15	1.45	0.31	0.95	Matched[195]
YBL006W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified gene LDB7/YBL006C"	Dubious	chr2:216714-216863	216714-216863	98.2%	468.46	420.93	475.25	325.88	699.29	305.52	444.70	400.57	502.40	1.64	1.63	2.08	0.33	NaN	Covered/w/another[195]
YBL006C	LDB7	"Component of the RSC chromatin remodeling complex; interacts with Rsc3p, Rsc30p, Npl6p, and Htl1p to form a module important for a broad range of RSC functions"	Verified	chr2:216590-217132	216590-217132	98.7%	387.94	371.15	410.32	287.22	546.47	268.57	379.55	348.77	407.52	1.40	1.42	1.69	0.22	-0.18	Covered/w/another[195]
YBL005W	PDR3	"Transcriptional activator of the pleiotropic drug resistance network, regulates expression of ATP-binding cassette (ABC) transporters through binding to cis-acting sites known as PDREs (PDR responsive elements)"	Verified	chr2:217473-220403	217473-220403	99.1%	110.87	133.93	85.39	67.14	71.62	67.83	122.40	76.26	69.72	0.45	0.31	0.29	-0.13	0.29	Matched[196]
YBL004W	UTP20	"Component of the small-subunit (SSU) processome, which is involved in the biogenesis of the 18S rRNA"	Verified	chr2:227639-235120	227639-235120	99.0%	103.45	43.22	52.80	37.68	6.62	3.11	73.33	45.24	4.86	0.27	0.18	0.02	-3.22	-2.79	Frag<80[199,200]
YBL003C	HTA2	One of two nearly identical (see also HTA1) histone H2A subtypes; core histone required for chromatin assembly and chromosome function; DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p	Verified	chr2:235397-235795	235397-235795	70.9%	6596.20	5197.11	5882.53	4910.94	4663.62	2564.99	5896.66	5396.73	3614.31	21.77	21.91	14.98	-0.58	-1.27	Matched[201]
YBL002W	HTB2	"One of two nearly identical (see HTB1) histone H2B subtypes required for chromatin assembly and chromosome function; Rad6p-Bre1p-Lge1p mediated ubiquitination regulates transcriptional activation, meiotic DSB formation and H3 methylation"	Verified	chr2:236495-236890	236495-236890	84.8%	3283.96	2971.34	2792.71	2131.75	2998.14	1932.27	3127.65	2462.23	2465.20	11.55	9.99	10.21	0.00	-0.19	Matched[203]
YBL001C	ECM15	"Non-essential protein of unknown function, likely exists as tetramer, may be regulated by the binding of small-molecule ligands (possibly sulfate ions), may have a role in yeast cell-wall biogenesis"	Verified	chr2:237155-237469	237155-237469	99.3%	1007.33	1403.86	1068.09	1122.45	3309.79	1848.37	1205.60	1095.27	2579.08	4.45	4.45	10.69	1.24	0.30	Matched[203]
YBR001C	NTH2	"Putative neutral trehalase, required for thermotolerance and may mediate resistance to other cellular stresses"	Verified	chr2:238943-241285	238943-241285	98.9%	106.13	120.37	154.88	138.49	422.37	364.99	113.25	146.69	393.68	0.42	0.60	1.63	1.42	1.31	Matched[205]
YBR002C	RER2	Cis-prenyltransferase involved in dolichol synthesis; participates in endoplasmic reticulum (ER) protein sorting	Verified	chr2:241710-242570	241710-242570	99.1%	199.15	209.69	178.06	124.18	164.01	97.23	204.42	151.12	130.62	0.75	0.61	0.54	-0.21	-0.14	Covered/w/another[206]
YBR003W	COQ1	"Hexaprenyl pyrophosphate synthetase, catalyzes the first step in ubiquinone (coenzyme Q) biosynthesis"	Verified	chr2:242811-244232	242811-244232	98.9%	206.28	280.97	259.63	263.19	445.29	342.86	243.63	261.41	394.07	0.90	1.06	1.63	0.59	0.57	Covered/w/another[206]
YBR004C	GPI18	"Functional ortholog of human PIG-V, which is a mannosyltransferase that transfers the second mannose in glycosylphosphatidylinositol biosynthesis; the authentic, non-tagged protein was localized to mitochondria"	Verified	chr2:244368-245669	244368-245669	99.0%	107.08	96.22	107.86	79.92	65.96	38.80	101.65	93.89	52.38	0.38	0.38	0.22	-0.84	-0.41	Matched[207]
YBR005W	RCR1	"Protein of the ER membrane involved in cell wall chitin deposition; may function in the endosomal-vacuolar trafficking pathway, helping determine whether plasma membrane proteins are degraded or routed to the plasma membrane"	Verified	chr2:245908-246549	245908-246549	98.4%	68.06	96.54	75.97	117.12	156.69	132.95	82.30	96.54	144.82	0.30	0.39	0.60	0.58	1.04	Frag>80[208,209]
YBR006W	UGA2	Succinate semialdehyde dehydrogenase involved in the utilization of gamma-aminobutyrate (GABA) as a nitrogen source; part of the 4-aminobutyrate and glutamate degradation pathways; localized to the cytoplasm	Verified	chr2:247012-248505	247012-248505	98.7%	77.30	112.56	100.36	93.58	339.04	225.80	94.93	96.97	282.42	0.35	0.39	1.17	1.54	1.45	Matched[210]
YBR007C	DSF2	Deletion suppressor of mpt5 mutation	Uncharacterized	chr2:248807-251017	248807-251017	99.0%	116.08	148.99	77.69	79.06	77.69	71.75	132.53	78.38	74.72	0.49	0.32	0.31	-0.07	0.51	Matched[211]
YBR008C	FLR1	"Plasma membrane multidrug transporter of the major facilitator superfamily, involved in efflux of fluconazole, diazaborine, benomyl, methotrexate, and other drugs"	Verified	chr2:252564-254210	252564-254210	98.8%	112.52	147.56	69.48	71.32	72.55	46.11	130.04	70.40	59.33	0.48	0.29	0.25	-0.25	-0.14	Covered[213]
YBR009C	HHF1	One of two identical histone H4 proteins (see also HHF2); core histone required for chromatin assembly and chromosome function; contributes to telomeric silencing; N-terminal domain involved in maintaining genomic integrity	Verified	chr2:255371-255682	255371-255682	33.0%	4351.27	3603.40	4157.02	3001.21	4225.01	2467.02	3977.34	3579.12	3346.01	14.68	14.53	13.86	-0.10	-1.39	Matched[214]
YBR010W	HHT1	"One of two identical histone H3 proteins (see also HHT2); core histone required for chromatin assembly, involved in heterochromatin-mediated telomeric and HM silencing; regulated by acetylation, methylation, and mitotic phosphorylation"	Verified	chr2:256329-256739	256329-256739	62.6%	6026.23	5389.02	5505.59	4238.95	5831.96	3733.85	5707.62	4872.27	4782.90	21.07	19.78	19.82	-0.03	-0.61	Matched[216]
YBR011C	IPP1	"Cytoplasmic inorganic pyrophosphatase (PPase), catalyzes the rapid exchange of oxygens from Pi with water, highly expressed and essential for viability, active-site residues show identity to those from E. coli PPase"	Verified	chr2:257110-257973	257110-257973	98.8%	3286.04	3382.06	3151.36	3185.32	3085.78	2742.66	3334.05	3168.34	2914.22	12.31	12.86	12.07	-0.12	-0.77	Matched[217]
YBR012C		"Dubious open reading frame, unlikely to encode a functional protein; expression induced by iron-regulated transcriptional activator Aft2p"	Dubious	chr2:259145-259564	259145-259564	99.7%	43.00	191.12	38.22	45.39	23.89	28.67	117.06	41.81	26.28	0.43	0.17	0.11	-0.67	-0.06	Matched[218]
YBR013C		"Putative protein of unknown function, haploid deletion mutant exhibits synthetic phenotype with alpha-synuclein"	Uncharacterized	chr2:265490-265879	265490-265879	99.2%	116.27	142.10	98.18	90.43	284.21	193.78	129.19	94.31	238.99	0.48	0.38	0.99	1.34	0.90	Frag>80[220,221]
YBR014C		Putative thiol oxidoreductase; contains glutaredoxin domain; membrane localized	Uncharacterized	chr2:266725-267336	266725-267336	99.1%	352.67	344.43	405.41	309.83	789.40	509.24	348.55	357.62	649.32	1.29	1.45	2.69	0.86	0.85	Frag>80[222,223]
YBR015C	MNN2	"Alpha-1,2-mannosyltransferase, responsible for addition of the first alpha-1,2-linked mannose to form the branches on the mannan backbone of oligosaccharides, localizes to an early Golgi compartment"	Verified	chr2:267710-269503	267710-269503	99.0%	356.44	384.03	371.08	341.80	241.57	215.66	370.23	356.44	228.61	1.37	1.45	0.95	-0.64	-0.14	Matched[224]
YBR016W		"Plasma membrane protein of unknown function; has similarity to hydrophilins, which are hydrophilic, glycine-rich proteins involved in the adaptive response to hyperosmotic conditions"	Uncharacterized	chr2:270247-270633	270247-270633	97.8%	594.45	615.59	554.82	475.56	850.73	533.69	605.02	515.19	692.21	2.23	2.09	2.87	0.43	-0.08	Matched[226]
YBR017C	KAP104	"Transportin, cytosolic karyopherin beta 2 involved in delivery of heterogeneous nuclear ribonucleoproteins to the nucleoplasm, binds rg-nuclear localization signals on Nab2p and Hrp1p, plays a role in cell-cycle progression"	Verified	chr2:270947-273703	270947-273703	98.9%	253.66	230.20	214.44	229.47	151.76	174.12	241.93	221.95	162.94	0.89	0.90	0.68	-0.45	0.36	Frag>80[226,227]
YBR018C	GAL7	"Galactose-1-phosphate uridyl transferase, synthesizes glucose-1-phosphate and UDP-galactose from UDP-D-glucose and alpha-D-galactose-1-phosphate in the second step of galactose catabolism"	Verified	chr2:274427-275527	274427-275527	99.0%	16.52	22.94	18.35	12.85	57.81	39.46	19.73	15.60	48.64	0.07	0.06	0.20	1.64	1.85	Matched[228]
YBR019C	GAL10	"UDP-glucose-4-epimerase, catalyzes the interconversion of UDP-galactose and UDP-D-glucose in galactose metabolism; also catalyzes the conversion of alpha-D-glucose or alpha-D-galactose to their beta-anomers"	Verified	chr2:276253-278352	276253-278352	99.2%	20.64	24.00	20.16	17.28	47.04	52.81	22.32	18.72	49.92	0.08	0.08	0.21	1.42	1.15	Frag<80[229]
YBR020W	GAL1	"Galactokinase, phosphorylates alpha-D-galactose to alpha-D-galactose-1-phosphate in the first step of galactose catabolism; expression regulated by Gal4p"	Verified	chr2:279021-280607	279021-280607	98.8%	50.39	49.75	31.25	27.43	15.95	12.76	50.07	29.34	14.35	0.18	0.12	0.06	-1.03	-0.08	Covered[230]
YBR021W	FUR4	"Uracil permease, localized to the plasma membrane; expression is tightly regulated by uracil levels and environmental cues"	Verified	chr2:281443-283344	281443-283344	99.0%	79.67	64.27	81.26	70.64	18.06	11.68	71.97	75.95	14.87	0.27	0.31	0.06	-2.35	-1.94	Frag>80[231,232]
YBR022W	POA1	"Phosphatase that is highly specific for ADP-ribose 1''-phosphate, a tRNA splicing metabolite; may have a role in regulation of tRNA splicing"	Verified	chr2:283738-284271	283738-284271	98.7%	189.74	176.46	159.38	130.92	394.66	208.71	183.10	145.15	301.68	0.68	0.59	1.25	1.06	0.42	Matched[233]
YBR023C	CHS3	"Chitin synthase III, catalyzes the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for synthesis of the majority of cell wall chitin, the chitin ring during bud emergence, and spore wall chitosan"	Verified	chr2:284428-287925	284428-287925	99.0%	153.01	157.63	160.51	135.11	75.64	82.28	155.32	147.81	78.96	0.57	0.60	0.33	-0.90	-0.31	Frag>80[233,234]
YBR024W	SCO2	"Protein anchored to the mitochondrial inner membrane, similar to Sco1p and may have a redundant function with Sco1p in delivery of copper to cytochrome c oxidase; interacts with Cox2p"	Verified	chr2:289445-290350	289445-290350	98.6%	236.32	403.19	244.16	269.91	515.19	391.99	319.75	257.03	453.59	1.18	1.04	1.88	0.82	0.58	Matched[235]
YBR025C	OLA1	P-loop ATPase with similarity to human OLA1 and bacterial YchF; identified as specifically interacting with the proteasome; protein levels are induced by hydrogen peroxide	Verified	chr2:290681-291865	290681-291865	99.0%	2249.28	1949.38	1811.35	1722.74	2398.38	2189.64	2099.33	1767.05	2294.01	7.75	7.17	9.50	0.38	0.58	Frag>80[236,237,238]
YBR026C	ETR1	"2-enoyl thioester reductase, member of the medium chain dehydrogenase/reductase family; localized to in mitochondria, where it has a probable role in fatty acid synthesis"	Verified	chr2:292877-294019	292877-294019	99.1%	376.12	444.10	394.66	409.67	1237.83	965.01	410.11	402.16	1101.42	1.51	1.63	4.56	1.45	1.73	Frag>80[239,240]
YBR027C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr2:294024-294356	294024-294356	99.0%	87.92	93.99	93.99	75.80	103.08	72.76	90.96	84.89	87.92	0.34	0.34	0.36	0.05	1.25	Covered[240]
YBR028C		"Putative protein kinase, possible substrate of cAMP-dependent protein kinase (PKA)"	Uncharacterized	chr2:294425-296002	294425-296002	99.2%	245.32	287.49	230.63	212.74	100.94	94.55	266.40	221.68	97.75	0.98	0.90	0.40	-1.18	-0.50	Matched[241]
YBR029C	CDS1	"Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase); an enzyme that catalyzes that conversion of CTP + phosphate into diphosphate + CDP-diaclglyerol, a critical step in the synthesis of all major yeast phospholipids"	Verified	chr2:296369-297742	296369-297742	98.8%	299.83	234.27	325.62	293.20	204.06	211.43	267.05	309.41	207.75	0.99	1.26	0.86	-0.57	-0.12	Frag>80[242,243]
YBR030W		Putative protein of unknown function; predicted protein contains a SET domain (S-adenosyl-L-methionine-binding fold)	Uncharacterized	chr2:298292-299950	298292-299950	98.7%	107.46	101.96	94.03	86.09	32.36	27.48	104.71	90.06	29.92	0.39	0.37	0.12	-1.59	-1.07	Matched[244]
YBR031W	RPL4A	"N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Bp and has similarity to E. coli L4 and rat L4 ribosomal proteins"	Verified	chr2:300166-301254	300166-301254	7.4%	5996.88	4285.27	4560.12	3510.67	1086.93	437.27	5141.07	4035.40	762.10	18.98	16.38	3.16	-2.40	-3.26	Frag<80[245,246,247]
YBR032W		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data"	Dubious	chr2:301519-301821	301519-301821	98.8%	23.37	6.68	20.03	13.36	50.08	36.73	15.03	16.69	43.41	0.06	0.07	0.18	1.38	-0.22	Covered/w/another[248]
YBR033W	EDS1	Putative zinc cluster protein; YBR033W is not an essential gene	Uncharacterized	chr2:301944-304703	301944-304703	98.8%	21.27	22.00	22.37	20.54	53.91	43.28	21.64	21.45	48.59	0.08	0.09	0.20	1.18	0.55	Matched[248]
YBR034C	HMT1	"Nuclear SAM-dependent mono- and asymmetric arginine dimethylating methyltransferase that modifies hnRNPs, including Npl3p and Hrp1p, thus facilitating nuclear export of these proteins; required for viability of npl3 mutants"	Verified	chr2:304930-305976	304930-305976	98.9%	506.94	324.44	393.00	265.54	55.04	26.07	415.69	329.27	40.56	1.53	1.34	0.17	-3.02	-2.50	Matched[249]
YBR035C	PDX3	"Pyridoxine (pyridoxamine) phosphate oxidase, has homologs in E. coli and Myxococcus xanthus; transcription is under the general control of nitrogen metabolism"	Verified	chr2:306269-306955	306269-306955	99.0%	542.38	768.74	607.06	645.27	1086.23	754.04	655.56	626.16	920.14	2.42	2.54	3.81	0.56	0.48	Frag>80[250,251]
YBR036C	CSG2	"Endoplasmic reticulum membrane protein, required for mannosylation of inositolphosphorylceramide and for growth at high calcium concentrations"	Verified	chr2:309081-310313	309081-310313	98.6%	498.34	511.50	532.05	486.00	557.55	443.24	504.92	509.03	500.39	1.86	2.07	2.07	-0.02	0.25	Matched[254]
YBR037C	SCO1	"Copper-binding protein of the mitochondrial inner membrane, required for cytochrome c oxidase activity and respiration; may function to deliver copper to cytochrome c oxidase; has similarity to thioredoxins"	Verified	chr2:310564-311451	310564-311451	98.9%	157.10	239.07	204.91	226.54	465.61	270.94	198.08	215.73	368.28	0.73	0.88	1.53	0.77	0.79	Frag>80[255,256]
YBR038W	CHS2	"Chitin synthase II, requires activation from zymogenic form in order to catalyze the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for the synthesis of chitin in the primary septum during cytokinesis"	Verified	chr2:311897-314788	311897-314788	98.8%	154.97	153.57	169.31	145.53	138.18	181.56	154.27	157.42	159.87	0.57	0.64	0.66	0.02	0.68	Matched[257]
YBR039W	ATP3	"Gamma subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis"	Verified	chr2:315575-316510	315575-316510	98.9%	907.74	893.69	962.85	1230.85	1121.71	935.84	900.72	1096.85	1028.77	3.32	4.45	4.26	-0.09	-0.45	Matched[258]
YBR040W	FIG1	"Integral membrane protein required for efficient mating; may participate in or regulate the low affinity Ca2+ influx system, which affects intracellular signaling and cell-cell fusion during mating"	Verified	chr2:316968-317864	316968-317864	99.2%	14.61	6.74	11.24	11.24	3.37	7.87	10.67	11.24	5.62	0.04	0.05	0.02	-1.00	-2.61	Frag<80[259]
YBR041W	FAT1	"Fatty acid transporter and very long-chain fatty acyl-CoA synthetase, may form a complex with Faa1p or Faa4p that imports and activates exogenous fatty acids"	Verified	chr2:318266-320275	318266-320275	98.9%	287.12	302.71	320.81	297.18	226.78	122.69	294.92	308.99	174.74	1.09	1.25	0.72	-0.82	-0.94	Matched[260]
YBR042C	CST26	"Protein of unknown function, affects chromosome stability when overexpressed"	Verified	chr2:320416-321609	320416-321609	99.0%	196.23	248.67	182.70	171.70	164.09	98.96	222.45	177.20	131.52	0.82	0.72	0.54	-0.43	-0.69	Covered/w/another[261]
YBR043C	QDR3	"Multidrug transporter of the major facilitator superfamily, required for resistance to quinidine, barban, cisplatin, and bleomycin"	Verified	chr2:321876-323945	321876-323945	99.0%	94.20	118.60	79.07	62.47	51.74	40.02	106.40	70.77	45.88	0.39	0.29	0.19	-0.63	-0.43	Covered/w/another[261]
YBR044C	TCM62	Protein involved in the assembly of the mitochondrial succinate dehydrogenase complex; putative chaperone	Verified	chr2:324337-326058	324337-326058	99.2%	88.96	112.37	98.32	84.28	137.54	83.11	100.67	91.30	110.32	0.37	0.37	0.46	0.27	0.50	Matched[262]
YBR045C	GIP1	"Meiosis-specific regulatory subunit of the Glc7p protein phosphatase, regulates spore wall formation and septin organization, required for expression of some late meiotic genes and for normal localization of Glc7p"	Verified	chr2:328369-330090	328369-330090	99.3%	15.79	22.81	15.79	17.55	59.07	30.41	19.30	16.67	44.74	0.07	0.07	0.19	1.42	1.65	Covered[263]
YBR046C	ZTA1	"Zeta-crystallin homolog, found in the cytoplasm and nucleus; has similarity to E. coli quinone oxidoreductase and to human zeta-crystallin, which has quinone oxidoreductase activity"	Verified	chr2:330505-331509	330505-331509	99.1%	181.70	310.20	267.03	269.04	816.16	710.75	245.95	268.04	763.46	0.91	1.09	3.16	1.51	1.50	Matched[264]
YBR047W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr2:331831-332358	331831-332358	98.8%	61.31	116.88	30.66	49.82	137.95	61.31	89.09	40.24	99.63	0.33	0.16	0.41	1.31	1.08	Matched[265]
YBR048W	RPS11B	Protein component of the small (40S) ribosomal subunit; identical to Rps11Ap and has similarity to E. coli S17 and rat S11 ribosomal proteins	Verified	chr2:332829-333810	332829-332873,333385-333810	51.5%	5826.80	4977.32	5294.85	4944.33	1698.97	1583.51	5402.06	5119.59	1641.24	19.94	20.78	6.80	-1.64	-2.33	Matched[266]
YBR049C	REB1	RNA polymerase I enhancer binding protein; DNA binding protein which binds to genes transcribed by both RNA polymerase I and RNA polymerase II; required for termination of RNA polymerase I transcription	Verified	chr2:334384-336816	334384-336816	99.3%	172.22	133.72	177.60	150.27	149.86	143.24	152.97	163.94	146.55	0.56	0.67	0.61	-0.16	0.50	Matched[268]
YBR051W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partiallly overlaps the REG2/YBR050C regulatory subunit of the Glc7p type-1 protein phosphatase"	Dubious	chr2:337986-338336	337986-338336	98.8%	20.19	69.21	60.56	69.21	5.77	11.54	44.70	64.89	8.65	0.17	0.26	0.04	-2.91	-0.04	Covered/w/another[269]
YBR050C	REG2	"Regulatory subunit of the Glc7p type-1 protein phosphatase; involved with Reg1p, Glc7p, and Snf1p in regulation of glucose-repressible genes, also involved in glucose-induced proteolysis of maltose permease"	Verified	chr2:337181-338197	337181-338197	99.2%	32.71	68.40	82.28	87.23	31.72	11.90	50.56	84.75	21.81	0.19	0.34	0.09	-1.96	-1.85	Matched[269]
YBR052C	RFS1	Protein of unknown function; member of a flavodoxin-like fold protein family that includes Pst2p and Ycp4p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern	Verified	chr2:338718-339350	338718-339350	99.1%	927.92	1321.73	1155.92	1151.13	3506.01	2672.16	1124.83	1153.52	3089.09	4.15	4.68	12.80	1.42	1.27	Frag>80[270,271,272]
YBR053C		Putative protein of unknown function; induced by cell wall perturbation	Uncharacterized	chr2:339673-340749	339673-340749	99.1%	236.98	342.83	274.45	302.55	1055.66	739.05	289.91	288.50	897.35	1.07	1.17	3.72	1.64	1.57	Frag>80[272,273]
YBR054W	YRO2	"Putative protein of unknown function; the authentic, non-tagged protein is detected in a phosphorylated state in highly purified mitochondria in high-throughput studies; transcriptionally regulated by Haa1p"	Verified	chr2:343099-344133	343099-344133	96.9%	191.35	854.12	128.57	158.47	2123.83	1645.45	522.74	143.52	1884.64	1.93	0.58	7.81	3.72	3.72	Matched[274]
YBR055C	PRP6	"Splicing factor, component of the U4/U6-U5 snRNP complex"	Verified	chr2:344600-347299	344600-347299	99.3%	125.31	112.26	107.41	86.15	66.76	59.30	118.79	96.78	63.03	0.44	0.39	0.26	-0.62	0.15	Matched[275]
YBR056W		Putative cytoplasmic protein of unknown function	Uncharacterized	chr2:347877-349382	347877-349382	98.7%	263.78	395.00	362.03	374.81	1250.27	837.10	329.39	368.42	1043.68	1.22	1.50	4.32	1.50	1.44	Matched[276]
YBR056W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF YBR056C-B"	Dubious	chr2:351253-351453	351253-351453	98.9%	25.15	20.12	20.12	30.18	20.12	30.18	22.64	25.15	25.15	0.08	0.10	0.10	0.00	NaN	Matched[279]
YBR056C-B		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; almost completely overlaps the dubious ORF YBR056W-A"	Dubious	chr2:351291-351449	351291-351449	98.7%	31.87	19.12	19.12	19.12	19.12	31.87	25.50	19.12	25.50	0.09	0.08	0.11	0.42	NaN	Matched[279]
YBR057C	MUM2	"Cytoplasmic protein essential for meiotic DNA replication and sporulation; interacts with Orc2p, which is a component of the origin recognition complex"	Verified	chr2:352191-353291	352191-353291	99.2%	211.51	247.22	239.90	174.89	207.85	142.84	229.37	207.39	175.35	0.85	0.84	0.73	-0.24	-0.03	Frag>80[280,281,282]
YBR058C	UBP14	"Ubiquitin-specific protease that specifically disassembles unanchored ubiquitin chains; involved in fructose-1,6-bisphosphatase (Fbp1p) degradation; similar to human isopeptidase T"	Verified	chr2:353670-356015	353670-356015	99.1%	162.53	145.76	130.71	136.30	122.11	134.58	154.14	133.50	128.34	0.57	0.54	0.53	-0.06	0.39	Frag>80[282,283]
YBR058C-A	TSC3	"Protein that stimulates the activity of serine palmitoyltransferase (Lcb1p, Lcb2p) several-fold; involved in sphingolipid biosynthesis"	Verified	chr2:356322-356564	356322-356564	98.9%	678.34	649.21	636.73	645.05	1144.44	611.76	663.78	640.89	878.10	2.45	2.60	3.64	0.45	-0.02	Matched[284]
YBR059C	AKL1	"Ser-Thr protein kinase, member (with Ark1p and Prk1p) of the Ark kinase family; involved in endocytosis and actin cytoskeleton organization"	Verified	chr2:356859-360185	356859-360185	99.1%	159.57	199.31	188.08	192.03	235.41	295.47	179.44	190.05	265.44	0.66	0.77	1.10	0.48	1.02	Matched[285]
YBR060C	ORC2	"Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; phosphorylated by Cdc28p"	Verified	chr2:360650-362512	360650-362512	99.1%	128.97	101.34	110.55	95.38	68.28	49.31	115.16	102.96	58.80	0.43	0.42	0.24	-0.81	-0.12	Matched[286]
YBR061C	TRM7	"2'-O-ribose methyltransferase, methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop"	Verified	chr2:364785-365717	364785-365717	99.0%	150.43	122.29	120.13	115.80	30.30	23.81	136.36	117.97	27.06	0.50	0.48	0.11	-2.12	-1.79	Covered[287]
YBR062C		Hypothetical protein	Uncharacterized	chr2:365974-366598	365974-366500,366583-366598	99.1%	222.89	261.90	182.03	217.32	774.55	404.92	242.40	199.67	589.74	0.89	0.81	2.44	1.56	1.12	Matched[288]
YBR064W		Dubious open reading frame unlikely to encode a protein; partially overlaps the uncharacterized ORF YBR063C	Dubious	chr2:367761-368189	367761-368189	99.2%	89.32	108.12	63.46	44.66	119.87	105.77	98.72	54.06	112.82	0.36	0.22	0.47	1.06	0.13	Covered/w/another[289]
YBR063C		Putative protein of unknown function; YBR063C is not an essential gene	Uncharacterized	chr2:366968-368182	366968-368182	99.2%	115.31	136.05	63.88	61.39	166.74	140.20	125.68	62.63	153.47	0.46	0.25	0.64	1.29	1.33	Covered/w/another[289]
YBR065C	ECM2	"Pre-mRNA splicing factor, facilitates the cooperative formation of U2/U6 helix II in association with stem II in the spliceosome, function may be regulated by Slu7p"	Verified	chr2:368582-369676	368582-369676	99.2%	67.22	81.96	43.28	47.89	111.43	131.69	74.59	45.58	121.56	0.28	0.19	0.50	1.42	1.87	Covered/w/another[289]
YBR066C	NRG2	Transcriptional repressor that mediates glucose repression and negatively regulates filamentous growth; has similarity to Nrg1p	Verified	chr2:370035-370697	370035-370697	99.0%	138.62	280.29	170.61	149.29	396.06	319.90	209.46	159.95	357.98	0.77	0.65	1.48	1.16	0.52	Frag>80[290,291]
YBR067C	TIP1	Major cell wall mannoprotein with possible lipase activity; transcription is induced by heat- and cold-shock; member of the Srp1p/Tip1p family of serine-alanine-rich proteins	Verified	chr2:372100-372732	372100-372732	93.8%	2139.25	10123.53	2159.46	2279.06	7034.25	6618.19	6131.39	2219.26	6826.22	22.63	9.01	28.28	1.62	1.64	Frag>80[293,294,295]
YBR068C	BAP2	"High-affinity leucine permease, functions as a branched-chain amino acid permease involved in the uptake of leucine, isoleucine and valine; contains 12 predicted transmembrane domains"	Verified	chr2:373858-375687	373858-375687	98.9%	572.10	631.80	492.50	359.29	599.18	415.12	601.95	425.90	507.15	2.22	1.73	2.10	0.25	0.18	Matched[297]
YBR069C	TAT1	"Amino acid transport protein for valine, leucine, isoleucine, and tyrosine, low-affinity tryptophan and histidine transporter; overexpression confers FK506 resistance"	Verified	chr2:376571-378430	376571-378430	98.8%	555.47	335.68	480.39	345.47	83.78	52.77	445.57	412.93	68.28	1.64	1.68	0.28	-2.60	-2.20	Matched[299]
YBR070C	ALG14	Component of UDP-GlcNAc transferase required for the second step of dolichyl-linked oligosaccharide synthesis; anchors the catalytic subunit Alg13p to the ER membrane; similar to bacterial and human glycosyltransferases	Verified	chr2:379218-379931	379218-379931	99.1%	185.16	147.00	183.75	122.97	158.30	83.39	166.08	153.36	120.85	0.61	0.62	0.50	-0.34	-0.45	Frag>80[300,301]
YBR071W		Putative protein of unknown function; (GFP)-fusion and epitope-tagged proteins localize to the cytoplasm; mRNA expression may be regulated by the cell cycle and/or cell wall stress	Uncharacterized	chr2:380408-381043	380408-381043	98.6%	240.85	237.66	237.66	205.76	309.43	178.64	239.25	221.71	244.04	0.88	0.90	1.01	0.14	0.03	Matched[302]
YBR072W	HSP26	"Small heat shock protein (sHSP) with chaperone activity; forms hollow, sphere-shaped oligomers that suppress unfolded proteins aggregation; oligomer activation requires a heat-induced conformational change; not expressed in unstressed cells"	Verified	chr2:382027-382671	382027-382671	98.6%	207.62	1612.16	234.35	272.10	62613.28	37834.72	909.89	253.23	50224.00	3.36	1.03	208.10	7.63	5.26	Matched[304]
YBR072C-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr2:382855-383016	382855-383016	98.8%	31.25	18.75	6.25	18.75	18.75	43.75	25.00	12.50	31.25	0.09	0.05	0.13	1.32	NaN	Covered/w/another[304]
YBR073W	RDH54	"DNA-dependent ATPase, stimulates strand exchange by modifying the topology of double-stranded DNA; involved in recombinational repair of DNA double-strand breaks during mitosis and meiosis; proposed to be involved in crossover interference"	Verified	chr2:383209-385983	383209-385983	98.8%	229.04	197.31	180.90	169.59	56.89	49.24	213.17	175.24	53.07	0.79	0.71	0.22	-1.72	-1.47	Matched[305]
YBR074W		Putative metalloprotease	Uncharacterized	chr2:386281-389211	386281-389211	98.9%	180.02	162.09	153.12	140.02	91.39	78.63	171.05	146.57	85.01	0.63	0.59	0.35	-0.79	-0.06	Matched[306]
YBR076W	ECM8	Non-essential protein of unknown function	Verified	chr2:390369-391388	390369-391388	99.0%	8.91	22.78	21.79	17.83	43.58	30.70	15.85	19.81	37.14	0.06	0.08	0.15	0.91	1.84	Frag>80[307,308]
YBR076C-A		Dubious open reading frame unlikely to encode a protein; partially overlaps verified gene ECM8; identified by fungal homology and RT-PCR	Dubious	chr2:391345-391611	391345-391611	98.2%	110.58	137.27	163.97	91.52	186.84	114.39	123.93	127.74	150.62	0.46	0.52	0.62	0.24	NaN	Matched[308]
YBR077C	SLM4	"Component of the EGO complex, which is involved in the regulation of microautophagy, and of the GSE complex, which is required for proper sorting of amino acid permease Gap1p; gene exhibits synthetic genetic interaction with MSS4"	Verified	chr2:391799-392287	391799-392287	99.3%	222.53	245.19	271.98	247.25	358.52	255.49	233.86	259.62	307.01	0.86	1.05	1.27	0.24	0.24	Matched[309]
YBR078W	ECM33	"GPI-anchored protein of unknown function, has a possible role in apical bud growth; GPI-anchoring on the plasma membrane crucial to function; phosphorylated in mitochondria; similar to Sps2p and Pst1p"	Verified	chr2:393118-394854	393118-393175,393506-394854	99.3%	5807.96	5810.11	5606.80	5527.34	2260.04	2012.35	5809.04	5567.07	2136.20	21.44	22.60	8.85	-1.38	-1.42	Frag>80[310,311,312]
YBR079C	RPG1	"Subunit of the core complex of translation initiation factor 3(eIF3), essential for translation; part of a subcomplex (Prt1p-Rpg1p-Nip1p) that stimulates binding of mRNA and tRNA(i)Met to ribosomes"	Verified	chr2:395377-398271	395377-398271	99.1%	710.29	525.83	571.86	522.69	130.06	133.20	618.06	547.28	131.63	2.28	2.22	0.55	-2.06	-1.31	Matched[313]
YBR080C	SEC18	ATPase required for the release of Sec17p during the 'priming' step in homotypic vacuole fusion and for ER to Golgi transport; homolog of the mammalian NSF	Verified	chr2:398608-400884	398608-400884	99.2%	251.07	253.72	240.00	248.85	229.37	215.20	252.39	244.42	222.28	0.93	0.99	0.92	-0.14	0.60	Matched[314]
YBR081C	SPT7	"Subunit of the SAGA transcriptional regulatory complex, involved in proper assembly of the complex; also present as a C-terminally truncated form in the SLIK/SALSA transcriptional regulatory complex"	Verified	chr2:401247-405245	401247-405245	99.3%	116.29	124.85	113.52	111.00	82.31	112.01	120.57	112.26	97.16	0.45	0.46	0.40	-0.21	0.31	Matched[315]
YBR082C	UBC4	"Ubiquitin-conjugating enzyme (E2), mediates degradation of short-lived and abnormal proteins; interacts with E3-CaM in ubiquitinating calmodulin; interacts with many SCF ubiquitin protein ligases; component of the cellular stress response"	Verified	chr2:406622-407163	406622-407021,407117-407163	98.4%	1931.19	2038.10	2060.85	1835.66	7651.98	3760.02	1984.65	1948.25	5706.00	7.33	7.91	23.64	1.55	1.15	Matched[317]
YBR083W	TEC1	"Transcription factor required for full Ty1 epxression, Ty1-mediated gene activation, and haploid invasive and diploid pseudohyphal growth; TEA/ATTS DNA-binding domain family member"	Verified	chr2:409163-410623	409163-410623	98.8%	391.38	606.11	464.11	399.69	451.64	267.38	498.74	431.90	359.51	1.84	1.75	1.49	-0.26	0.02	Matched[320]
YBR084W	MIS1	"Mitochondrial C1-tetrahydrofolate synthase, involved in interconversion between different oxidation states of tetrahydrofolate (THF); provides activities of formyl-THF synthetase, methenyl-THF cyclohydrolase, and methylene-THF dehydrogenase"	Verified	chr2:411048-413975	411048-413975	98.4%	376.54	254.38	297.41	308.52	41.64	44.77	315.46	302.97	43.21	1.16	1.23	0.18	-2.81	-1.53	Matched[321]
YBR084C-A	RPL19A	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl19Bp and has similarity to rat L19 ribosomal protein; rpl19a and rpl19b single null mutations result in slow growth, while the double null mutation is lethal"	Verified	chr2:414180-415255	414180-414747,415254-415255	67.7%	6930.45	5797.84	6033.69	4864.79	1625.05	1536.93	6364.15	5449.24	1580.99	23.49	22.12	6.55	-1.79	-2.61	Matched[322]
YBR085W	AAC3	"Mitochondrial inner membrane ADP/ATP translocator, exchanges cytosolic ADP for mitochondrially synthesized ATP; expressed under anaerobic conditions; similar to Pet9p and Aac1p; has roles in maintenance of viability and in respiration"	Verified	chr2:415977-416900	415977-416900	98.6%	76.86	237.18	68.08	54.90	81.26	81.26	157.02	61.49	81.26	0.58	0.25	0.34	0.40	0.61	Matched[323]
YBR085C-A		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and to the nucleus	Uncharacterized	chr2:418901-419158	418901-419158	99.1%	308.95	414.53	387.16	273.75	16581.39	7958.29	361.74	330.45	12269.84	1.34	1.34	50.84	5.21	3.80	Matched[326]
YBR086C	IST2	"Plasma membrane protein that may be involved in osmotolerance, localizes to the mother cell in small-budded cells and to the bud in medium- and large-budded cells; mRNA is transported to the bud tip by an actomyosin-driven process"	Verified	chr2:420195-423035	420195-423035	98.9%	517.13	560.90	571.23	563.04	345.94	453.07	539.02	567.13	399.50	1.99	2.30	1.66	-0.51	0.45	Covered/w/another[328]
YBR087W	RFC5	"Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon"	Verified	chr2:423759-424823	423759-424823	98.9%	185.10	179.40	164.21	120.55	117.70	101.57	182.25	142.38	109.63	0.67	0.58	0.45	-0.38	0.11	Covered/w/another[328]
YBR089W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; almost completely overlaps the verified gene POL30"	Dubious	chr2:425177-425776	425177-425776	99.1%	682.69	501.09	679.32	543.12	174.88	95.85	591.89	611.22	135.36	2.18	2.48	0.56	-2.17	-0.00	Covered/w/another[328]
YBR088C	POL30	"Proliferating cell nuclear antigen (PCNA), functions as the sliding clamp for DNA polymerase delta; may function as a docking site for other proteins required for mitotic and meiotic chromosomal DNA replication and for DNA repair"	Verified	chr2:424984-425760	424984-425760	99.0%	772.14	547.26	695.45	579.75	192.38	92.29	659.70	637.60	142.34	2.44	2.59	0.59	-2.16	-2.06	Covered/w/another[328]
YBR089C-A	NHP6B	"High-mobility group non-histone chromatin protein, functionally redundant with Nhp6Ap; homologous to mammalian high mobility group proteins 1 and 2; acts to recruit transcription factor Rcs1p to certain promoters"	Verified	chr2:426184-426868	426184-426510,426867-426868	99.2%	756.80	707.77	888.55	759.86	2086.56	1115.28	732.29	824.21	1600.92	2.70	3.35	6.63	0.96	0.32	Covered/w/another[329]
YBR090C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus	Uncharacterized	chr2:426327-427052	426327-427052	99.0%	194.74	159.96	203.08	200.30	520.23	265.68	177.35	201.69	392.95	0.65	0.82	1.63	0.96	0.74	Covered/w/another[329]
YBR091C	MRS5	"Essential protein of the inner mitochondrial membrane, peripherally localized; component of the TIM22 complex, which is a twin-pore translocase that mediates insertion of numerous multispanning inner membrane proteins"	Verified	chr2:427149-427478	427149-427478	99.3%	222.82	189.24	164.82	149.56	143.46	100.72	206.03	157.19	122.09	0.76	0.64	0.51	-0.36	-0.77	Covered/w/another[329]
YBR092C	PHO3	"Constitutively expressed acid phosphatase similar to Pho5p; brought to the cell surface by transport vesicles; hydrolyzes thiamin phosphates in the periplasmic space, increasing cellular thiamin uptake; expression is repressed by thiamin"	Verified	chr2:427692-429095	427692-429095	70.1%	596.54	456.30	368.90	353.66	97.56	85.37	526.42	361.28	91.46	1.94	1.47	0.38	-1.98	-1.52	Covered/w/another[329]
YBR093C	PHO5	Repressible acid phosphatase (1 of 3) that also mediates extracellular nucleotide-derived phosphate hydrolysis; secretory pathway derived cell surface glycoprotein; induced by phosphate starvation and coordinately regulated by PHO4 and PHO2	Verified	chr2:429542-430945	429542-430945	64.6%	742.38	603.39	721.42	572.51	164.36	132.37	672.89	646.96	148.37	2.48	2.63	0.61	-2.12	-1.42	Covered/w/another[329]
YBR094W	PBY1	Putative tubulin tyrosine ligase associated with P-bodies	Verified	chr2:432030-434291	432030-434291	98.8%	122.57	110.94	126.60	112.28	107.36	81.86	116.76	119.44	94.61	0.43	0.48	0.39	-0.34	-0.09	Frag<80[331]
YBR095C	RXT2	Subunit of the histone deacetylase Rpd3L complex; possibly involved in cell fusion and invasive growth	Verified	chr2:434400-435692	434400-435692	99.2%	111.48	123.95	105.24	82.63	109.92	48.33	117.72	93.94	79.13	0.43	0.38	0.33	-0.25	-0.04	Matched[332]
YBR096W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the ER	Uncharacterized	chr2:436015-436707	436015-436707	99.0%	396.45	329.41	424.15	317.75	789.99	448.93	362.93	370.95	619.46	1.34	1.51	2.57	0.74	0.47	Frag>80[333,334]
YBR097W	VPS15	Myristoylated serine/threonine protein kinase involved in vacuolar protein sorting; functions as a membrane-associated complex with Vps34p; active form recruits Vps34p to the Golgi membrane; interacts with the GDP-bound form of Gpa1p	Verified	chr2:436945-441309	436945-441309	99.1%	49.49	54.58	43.48	46.95	46.95	50.42	52.04	45.22	48.68	0.19	0.18	0.20	0.11	0.25	Covered/w/another[335]
YBR098W	MMS4	Subunit of the structure-specific Mms4p-Mus81p endonuclease that cleaves branched DNA; involved in recombination and DNA repair	Verified	chr2:441509-443584	441509-443584	98.7%	55.63	61.00	40.01	36.11	88.32	38.55	58.31	38.06	63.44	0.22	0.15	0.26	0.74	0.80	Covered/w/another[335]
YBR099C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified gene MMS4"	Dubious	chr2:442918-443301	442918-443301	98.7%	79.17	116.12	34.31	31.67	200.57	50.14	97.65	32.99	125.36	0.36	0.13	0.52	1.93	1.37	Covered/w/another[335]
YBR101C	FES1	"Hsp70 (Ssa1p) nucleotide exchange factor, cytosolic homolog of Sil1p, which is the nucleotide exchange factor for BiP (Kar2p) in the endoplasmic reticulum"	Verified	chr2:443815-444687	443815-444687	99.2%	307.26	233.33	301.49	323.43	5017.86	4526.93	270.30	312.46	4772.39	1.00	1.27	19.77	3.93	3.54	Frag<80[336]
YBR102C	EXO84	"Essential protein with dual roles in spliceosome assembly and exocytosis; the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, and Exo84p) mediates polarized targeting of secretory vesicles to active sites of exocytosis"	Verified	chr2:445056-447317	445056-447317	99.3%	94.84	109.53	92.17	82.37	97.95	87.71	102.18	87.27	92.83	0.38	0.35	0.38	0.09	0.50	Matched[337]
YBR103W	SIF2	"WD40 repeat-containing subunit of the Set3C histone deacetylase complex, which represses early/middle sporulation genes; antagonizes telomeric silencing; binds specifically to the Sir4p N-terminus"	Verified	chr2:447703-449310	447703-449310	98.4%	137.09	133.93	125.08	129.50	149.09	112.45	135.51	127.29	130.77	0.50	0.52	0.54	0.04	0.30	Matched[338]
YBR103C-A		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data; identified by homology to related yeast"	Dubious	chr2:449314-449457	449314-449457	98.3%	7.07	14.13	0.00	7.07	21.20	7.07	10.60	3.53	14.13	0.04	0.01	0.06	2.00	-1.05	Covered/w/another[338]
YBR104W	YMC2	"Mitochondrial protein, putative inner membrane transporter with a role in oleate metabolism and glutamate biosynthesis; member of the mitochondrial carrier (MCF) family; has similarity with Ymc1p"	Verified	chr2:449661-450650	449661-450650	98.5%	151.70	168.10	74.82	65.60	9.22	5.12	159.90	70.21	7.17	0.59	0.29	0.03	-3.29	-2.97	Matched[339]
YBR105C	VID24	"Peripheral membrane protein located at Vid (vacuole import and degradation) vesicles; regulates fructose-1,6-bisphosphatase (FBPase) targeting to the vacuole; involved in proteasome-dependent catabolite degradation of FBPase"	Verified	chr2:450875-451963	450875-451963	98.8%	247.11	312.13	192.30	142.13	258.25	154.21	279.62	167.22	206.23	1.03	0.68	0.85	0.30	0.64	Matched[340]
YBR106W	PHO88	"Probable membrane protein, involved in phosphate transport; pho88 pho86 double null mutant exhibits enhanced synthesis of repressible acid phosphatase at high inorganic phosphate concentrations"	Verified	chr2:452652-453218	452652-453218	98.6%	3191.18	2484.61	2774.39	2772.60	1316.54	901.54	2837.89	2773.50	1109.04	10.48	11.26	4.60	-1.32	-1.93	Matched[342]
YBR107C	IML3	"Protein with a role in kinetochore function, localizes to the outer kinetochore in a Ctf19p-dependent manner, interacts with Chl4p and Ctf19p"	Verified	chr2:453787-454524	453787-454524	99.2%	118.88	159.87	124.35	107.95	114.78	75.15	139.38	116.15	94.97	0.51	0.47	0.39	-0.29	0.23	Matched[343]
YBR108W		Protein interacting with Rsv167p	Uncharacterized	chr2:454816-457659	454816-457659	98.0%	81.84	77.17	83.27	82.91	110.19	134.96	79.50	83.09	122.57	0.29	0.34	0.51	0.56	0.95	Matched[344]
YBR109C	CMD1	"Calmodulin; Ca++ binding protein that regulates Ca++ independent processes (mitosis, bud growth, actin organization, endocytosis, etc.) and Ca++ dependent processes (stress-activated pathways), targets include Nuf1p, Myo2p and calcineurin"	Verified	chr2:457913-458356	457913-458356	99.1%	1340.91	1406.82	1329.55	1256.82	1656.82	1209.09	1373.86	1293.18	1432.95	5.07	5.25	5.94	0.15	0.18	Matched[345]
YBR109W-A		Putative protein of unknown function; questionable ORF from MIPS	Dubious	chr2:458602-458826	458602-458826	99.2%	35.85	26.89	53.78	35.85	40.34	31.37	31.37	44.82	35.85	0.12	0.18	0.15	-0.32	NaN	Covered/w/another[346]
YBR110W	ALG1	"Mannosyltransferase, involved in asparagine-linked glycosylation in the endoplasmic reticulum (ER); essential for viability, mutation is functionally complemented by human ortholog"	Verified	chr2:458866-460215	458866-460215	99.0%	221.50	193.07	223.75	212.52	146.67	127.96	207.28	218.13	137.32	0.77	0.89	0.57	-0.67	-0.43	Matched[346]
YBR111C	YSA1	Nudix hydrolase family member with ADP-ribose pyrophosphatase activity	Verified	chr2:461172-461867	461172-461867	99.1%	896.09	1287.58	994.68	962.78	2067.67	1358.63	1091.83	978.73	1713.15	4.03	3.97	7.10	0.81	0.72	Frag>80[347,348,349]
YBR111W-A	SUS1	Protein involved in mRNA export coupled transcription activation; component of the SAGA histone acetylase complex	Verified	chr2:462133-462573	462133-462203,462284-462423,462494-462573	98.9%	243.34	253.77	243.34	219.00	542.29	326.77	248.55	231.17	434.53	0.92	0.94	1.80	0.91	NaN	Matched[349]
YBR113W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene CYC8"	Dubious	chr2:465560-466042	465560-466042	95.6%	127.79	134.28	129.95	101.80	58.48	119.12	131.04	115.87	88.80	0.48	0.47	0.37	-0.38	-0.19	Covered/w/another[350]
YBR112C	CYC8	"General transcriptional co-repressor, acts together with Tup1p; also acts as part of a transcriptional co-activator complex that recruits the SWI/SNF and SAGA complexes to promoters"	Verified	chr2:462864-465764	462864-465764	92.6%	321.99	326.46	294.82	281.04	248.29	338.00	324.22	287.93	293.14	1.20	1.17	1.21	0.03	0.62	Matched[350]
YBR114W	RAD16	Protein that recognizes and binds damaged DNA in an ATP-dependent manner (with Rad7p) during nucleotide excision repair; subunit of Nucleotide Excision Repair Factor 4 (NEF4) and the Elongin-Cullin-Socs (ECS) ligase complex	Verified	chr2:467242-469614	467242-469614	98.5%	46.19	53.46	44.48	34.64	156.95	124.02	49.82	39.56	140.49	0.18	0.16	0.58	1.83	1.66	Matched[352]
YBR115C	LYS2	"Alpha aminoadipate reductase, catalyzes the reduction of alpha-aminoadipate to alpha-aminoadipate 6-semialdehyde, which is the fifth step in biosynthesis of lysine; activation requires posttranslational phosphopantetheinylation by Lys5p"	Verified	chr2:469742-473920	469742-473920	99.0%	180.47	261.89	145.68	127.56	44.70	52.18	221.18	136.62	48.44	0.82	0.55	0.20	-1.50	-0.71	Matched[353]
YBR116C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene TKL2"	Dubious	chr2:474193-474720	474193-474720	98.7%	15.35	28.78	17.27	11.51	456.59	341.49	22.06	14.39	399.04	0.08	0.06	1.65	4.79	3.22	Covered/w/another[354]
YBR117C	TKL2	"Transketolase, similar to Tkl1p; catalyzes conversion of xylulose-5-phosphate and ribose-5-phosphate to sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate in the pentose phosphate pathway; needed for synthesis of aromatic amino acids"	Verified	chr2:474386-476431	474386-476431	98.8%	34.62	28.68	18.30	10.38	270.50	270.00	31.65	14.34	270.25	0.12	0.06	1.12	4.24	4.45	Covered/w/another[354]
YBR118W	TEF2	Translational elongation factor EF-1 alpha; also encoded by TEF1; functions in the binding reaction of aminoacyl-tRNA (AA-tRNA) to ribosomes	Verified	chr2:477665-479041	477665-479041	2.7%	12710.71	11015.95	10551.25	9567.20	9321.18	6478.36	11863.33	10059.23	7899.77	43.79	40.83	32.73	-0.35	-1.75	Frag<80[355,356]
YBR119W	MUD1	"U1 snRNP A protein, homolog of human U1-A; involved in nuclear mRNA splicing"	Verified	chr2:479332-480317	479332-479339,479429-480317	98.7%	135.48	151.28	150.16	123.06	188.54	79.03	143.38	136.61	133.78	0.53	0.55	0.55	-0.03	0.07	Matched[357]
YBR120C	CBP6	Mitochondrial translational activator of the COB mRNA; phosphorylated	Verified	chr2:480429-480917	480429-480917	99.2%	199.88	187.52	249.33	228.73	346.18	236.97	193.70	239.03	291.58	0.72	0.97	1.21	0.29	0.24	Covered/w/another[357]
YBR121C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely contianed within the verified gene GRS1; identified by expression profiling and mass spectrometry"	Dubious	chr2:482320-482478	482320-482478	99.0%	1651.67	1003.71	1264.16	1467.44	590.79	476.44	1327.69	1365.80	533.62	4.90	5.54	2.21	-1.36	NaN	Covered/w/another[359]
YBR121C	GRS1	Cytoplasmic and mitochondrial glycyl-tRNA synthase that ligates glycine to the cognate anticodon bearing tRNA; transcription termination factor that may interact with the 3'-end of pre-mRNA to promote 3'-end formation	Verified	chr2:481358-483361	481358-483361	99.1%	1710.62	1238.77	1486.53	1490.05	562.48	551.91	1474.70	1488.29	557.20	5.44	6.04	2.31	-1.42	-1.12	Frag>80[358,359]
YBR122C	MRPL36	Mitochondrial ribosomal protein of the large subunit; overproduction suppresses mutations in the COX2 leader peptide-encoding region	Verified	chr2:483964-484497	483964-484497	99.1%	508.19	481.74	511.96	460.96	623.43	472.29	494.96	486.46	547.86	1.83	1.97	2.27	0.17	-0.05	Frag>80[360,361]
YBR124W		Putative protein of unknown function	Dubious	chr2:486501-486860	486501-486860	98.7%	61.94	56.30	59.12	19.71	28.15	28.15	59.12	39.41	28.15	0.22	0.16	0.12	-0.49	-0.29	Covered/w/another[362]
YBR123C	TFC1	One of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauA globular domain of TFIIIC that binds DNA at the BoxA promoter sites of tRNA and similar genes; human homolog is TFIIIC-63	Verified	chr2:484736-486685	484736-486685	99.2%	123.07	115.83	113.76	109.62	96.18	79.11	119.45	111.69	87.65	0.44	0.45	0.36	-0.35	-0.02	Matched[362]
YBR125C	PTC4	Cytoplasmic type 2C protein phosphatase; identified as a high-copy number suppressor of the synthetic lethality of a cnb1 mpk1 double deletion; overexpression decreases high-osmolarity induced Hog1p phosphorylation and kinase activity	Verified	chr2:487193-488374	487193-488374	99.2%	120.30	92.14	122.86	72.52	114.33	46.92	106.22	97.69	80.63	0.39	0.40	0.33	-0.28	-0.20	Matched[363]
YBR126C	TPS1	"Synthase subunit of trehalose-6-phosphate synthase/phosphatase complex, which synthesizes the storage carbohydrate trehalose; also found in a monomeric form; expression is induced by the stress response and repressed by the Ras-cAMP pathway"	Verified	chr2:488899-490386	488899-490386	98.9%	496.56	837.56	955.76	966.63	6085.76	5359.60	667.06	961.20	5722.68	2.46	3.90	23.71	2.57	1.78	Frag>80[364,365]
YBR126W-A		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF YBR126W-B; identified by gene-trapping, microarray analysis, and genome-wide homology searches"	Dubious	chr2:490844-491050	490844-491050	98.3%	1322.14	2383.78	1872.62	1779.23	4777.39	3396.27	1852.96	1825.93	4086.83	6.84	7.41	16.93	1.16	NaN	Matched[366]
YBR126W-B		Identified by SAGE	Dubious	chr2:490921-491064	490921-491064	98.1%	1464.62	2653.30	2165.09	2115.57	5490.57	4160.38	2058.96	2140.33	4825.47	7.60	8.69	19.99	1.17	NaN	Matched[366]
YBR127C	VMA2	"Subunit B of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; contains nucleotide binding sites; also detected in the cytoplasm"	Verified	chr2:491263-492816	491263-492816	99.1%	2737.10	3530.18	2594.21	2794.26	1919.35	1989.50	3133.64	2694.24	1954.42	11.57	10.94	8.10	-0.46	-0.79	Matched[367]
YBR128C	ATG14	"Subunit of an autophagy-specific phosphatidylinositol 3-kinase complex (with Vps34p, Vps15p, and Vps30p) required for organization of a pre-autophagosomal structure; ATG14 transcription is activated by Gln3p during nitrogen starvation"	Verified	chr2:493075-494109	493075-494109	99.2%	37.01	74.02	48.70	37.98	143.17	72.07	55.51	43.34	107.62	0.20	0.18	0.45	1.31	0.42	Matched[368]
YBR129C	OPY1	"Protein of unknown function, overproduction blocks cell cycle arrest in the presence of mating pheromone; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr2:494347-495333	494347-495333	99.2%	174.65	216.53	184.87	153.20	157.29	77.62	195.59	169.04	117.46	0.72	0.69	0.49	-0.53	-0.68	Matched[369]
YBR130C	SHE3	Protein that acts as an adaptor between Myo4p and the She2p-mRNA complex; part of the mRNA localization machinery that restricts accumulation of certain proteins to the bud; also required for cortical ER inheritance	Verified	chr2:495586-496863	495586-496863	99.2%	242.19	265.86	252.45	230.36	177.50	161.73	254.03	241.40	169.61	0.94	0.98	0.70	-0.51	0.08	Matched[370]
YBR131W	CCZ1	"Protein involved in vacuolar assembly, essential for autophagy and the cytoplasm-to-vacuole pathway"	Verified	chr2:497157-499271	497157-499271	98.8%	58.83	67.44	38.27	31.09	42.09	37.79	63.14	34.68	39.94	0.23	0.14	0.17	0.20	0.34	Matched[371]
YBR131C-A		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF YBR131W. Identified by gene-trapping, microarray analysis, and genome-wide homology searches"	Dubious	chr2:497644-497733	497644-497733	98.5%	11.28	22.57	22.57	22.57	22.57	22.57	16.93	22.57	22.57	0.06	0.09	0.09	0.00	NaN	Covered/w/another[371]
YBR132C	AGP2	"High affinity polyamine permease, preferentially uses spermidine over putrescine; expression is down-regulated by osmotic stress; plasma membrane carnitine transporter, also functions as a low-affinity amino acid permease"	Verified	chr2:499646-501436	499646-501436	98.8%	88.71	132.22	120.92	137.87	227.71	241.84	110.46	129.39	234.77	0.41	0.53	0.97	0.86	1.15	Covered/w/another[372]
YBR134W		"Dubious open reading frame, unlikely to encode a functional protein; based on available experimental and comparative sequence data"	Dubious	chr2:504237-504638	504237-504638	99.0%	27.65	37.71	25.14	17.60	32.68	25.14	32.68	21.37	28.91	0.12	0.09	0.12	0.44	0.02	Overlap[372]
YBR133C	HSL7	"Protein arginine N-methyltransferase that exhibits septin and Hsl1p-dependent bud neck localization and periodic Hsl1p-dependent phosphorylation; required along with Hsl1p for bud neck recruitment, phosphorylation, and degradation of Swe1p"	Verified	chr2:501798-504281	501798-504281	98.9%	157.09	166.45	138.37	77.33	108.26	55.76	161.77	107.85	82.01	0.60	0.44	0.34	-0.40	-0.14	Covered/w/another[372]
YBR135W	CKS1	"Cyclin-dependent protein kinase regulatory subunit and adaptor; modulates proteolysis of M-phase targets through interactions with the proteasome; role in transcriptional regulation, recruiting proteasomal subunits to target gene promoters"	Verified	chr2:504848-505300	504848-505300	94.6%	305.60	261.28	321.93	207.62	331.26	177.29	283.44	264.77	254.28	1.05	1.07	1.05	-0.06	0.04	Matched[373]
YBR136W	MEC1	Genome integrity checkpoint protein and PI kinase superfamily member; signal transducer required for cell cycle arrest and transcriptional responses prompted by damaged or unreplicated DNA; monitors and participates in meiotic recombination	Verified	chr2:505662-512768	505662-512768	98.9%	27.31	24.04	15.93	16.78	16.93	25.32	25.67	16.36	21.12	0.09	0.07	0.09	0.37	0.53	Frag<80[374]
YBR137W		Protein of unknown function; localized to the cytoplasm; binds to Replication Protein A (RPA); YBR137W is not an essential gene	Uncharacterized	chr2:513038-513577	513038-513577	98.3%	190.28	207.24	280.71	211.01	1083.29	687.65	198.76	245.86	885.47	0.73	1.00	3.67	1.85	1.56	Matched[375]
YBR138C		"Cytoplasmic protein of unknown function, potentially phosphorylated by Cdc28p; YBR138C is not an essential gene"	Uncharacterized	chr2:513756-515330	513756-515330	99.2%	72.98	65.30	73.62	65.94	165.80	99.23	69.14	69.78	132.52	0.26	0.28	0.55	0.93	0.71	Matched[376]
YBR139W		"Putative serine type carboxypeptidase with a role in phytochelatin synthesis; green fluorescent protein (GFP)-fusion protein localizes to the vacuole; expression induced by nitrogen limitation in a GLN3, GAT1-independent manner"	Verified	chr2:515658-517184	515658-517184	98.9%	327.84	513.95	427.19	405.33	1183.54	951.07	420.90	416.26	1067.31	1.55	1.69	4.42	1.36	1.46	Matched[377]
YBR140C	IRA1	"GTPase-activating protein that negatively regulates RAS by converting it from the GTP- to the GDP-bound inactive form, required for reducing cAMP levels under nutrient limiting conditions, mediates membrane association of adenylate cyclase"	Verified	chr2:517344-526622	517344-526622	99.0%	88.47	95.55	66.60	61.70	44.62	70.52	92.01	64.15	57.57	0.34	0.26	0.24	-0.16	-0.18	Frag>80[378,379]
YBR141W-A		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the uncharacterized ORF YBR141C; identified by gene-trapping, microarray analysis, and genome-wide homology searching"	Dubious	chr2:527161-527256	527161-527256	98.4%	74.07	42.33	31.75	52.91	63.49	10.58	58.20	42.33	37.04	0.21	0.17	0.15	-0.19	NaN	Covered/w/another[380]
YBR141C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus; YBR141C is not an essential gene	Uncharacterized	chr2:527019-528032	527019-528032	99.2%	56.67	34.80	42.75	38.78	39.77	24.86	45.74	40.77	32.31	0.17	0.17	0.13	-0.34	-2.49	Covered/w/another[380]
YBR142W	MAK5	"Essential nucleolar protein, putative DEAD-box RNA helicase required for maintenance of M1 dsRNA virus; involved in biogenesis of large (60S) ribosomal subunits"	Verified	chr2:528311-530632	528311-530632	98.7%	188.49	81.16	114.32	95.55	17.89	11.78	134.82	104.94	14.84	0.50	0.43	0.06	-2.82	-2.91	Matched[381]
YBR143C	SUP45	Polypeptide release factor involved in translation termination; mutant form acts as a recessive omnipotent suppressor	Verified	chr2:530863-532176	530863-532176	99.2%	1369.78	958.47	1164.12	1086.62	326.14	207.19	1164.12	1125.37	266.67	4.30	4.57	1.10	-2.08	-1.89	Matched[382]
YBR144C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; YBR144C is not an essential gene"	Dubious	chr2:533229-533543	533229-533543	98.8%	3.21	0.00	0.00	0.00	6.43	6.43	1.61	0.00	6.43	0.01	0.00	0.03	Inf	0.11	
YBR145W	ADH5	Alcohol dehydrogenase isoenzyme V; involved in ethanol production	Verified	chr2:533756-534811	533756-534811	97.9%	280.39	631.35	300.69	320.99	128.59	85.08	455.87	310.84	106.84	1.68	1.26	0.44	-1.54	-1.70	Frag>80[383,384]
YBR146W	MRPS9	Mitochondrial ribosomal protein of the small subunit	Verified	chr2:535254-536090	535254-536090	98.7%	412.77	457.56	456.35	473.29	470.87	291.72	435.16	464.82	381.30	1.61	1.89	1.58	-0.29	0.26	Matched[385]
YBR147W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; null mutant displays fluconazole resistance"	Uncharacterized	chr2:536569-537459	536569-537459	99.0%	35.15	98.65	52.16	75.97	290.28	200.70	66.90	64.07	245.49	0.25	0.26	1.02	1.94	1.61	Matched[386]
YBR148W	YSW1	Protein expressed specifically in spores	Verified	chr2:537870-539699	537870-539699	98.7%	22.14	24.36	21.04	15.50	29.34	37.09	23.25	18.27	33.22	0.09	0.07	0.14	0.86	0.87	Frag>80[387,388]
YBR149W	ARA1	"NADP+ dependent arabinose dehydrogenase, involved in carbohydrate metabolism; purified as homodimer; naturally occurs with a N-terminus degradation product"	Verified	chr2:539981-541015	539981-541015	98.7%	986.01	1388.44	1169.11	1167.15	3170.49	2425.36	1187.22	1168.13	2797.93	4.38	4.74	11.59	1.26	1.24	Matched[389]
YBR150C	TBS1	"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr2:541203-544487	541203-544487	97.4%	45.03	50.34	38.77	40.34	57.85	46.90	47.68	39.55	52.37	0.18	0.16	0.22	0.41	0.21	Matched[390]
YBR151W	APD1	"Protein of unknown function, required for normal localization of actin patches and for normal tolerance of sodium ions and hydrogen peroxide; localizes to both cytoplasm and nucleus"	Verified	chr2:545022-545972	545022-545972	98.6%	530.11	680.50	634.64	638.90	917.29	641.04	605.31	636.77	779.17	2.23	2.58	3.23	0.29	0.14	Matched[391]
YBR152W	SPP381	"mRNA splicing factor, component of U4/U6.U5 tri-snRNP; interacts genetically and physically with Prp38p"	Verified	chr2:546370-547245	546370-547245	98.1%	72.16	59.35	51.21	39.57	25.60	33.75	65.76	45.39	29.68	0.24	0.18	0.12	-0.61	-0.38	Covered/w/another[392]
YBR153W	RIB7	Diaminohydroxyphoshoribosylaminopyrimidine deaminase; catalyzes the second step of the riboflavin biosynthesis pathway	Verified	chr2:547454-548188	547454-548188	98.6%	150.35	179.32	143.46	100.70	86.90	51.04	164.84	122.08	68.97	0.61	0.50	0.29	-0.82	-0.70	Covered/w/another[392]
YBR154C	RPB5	"RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III; contacts DNA and affects transactivation"	Verified	chr2:548356-549003	548356-549003	99.3%	886.18	601.67	618.77	592.34	321.82	212.99	743.93	605.56	267.41	2.75	2.46	1.11	-1.18	-1.24	Matched[393]
YBR155W	CNS1	"TPR-containing co-chaperone; binds both Hsp82p (Hsp90) and Ssa1p (Hsp70) and stimulates the ATPase activity of SSA1, ts mutants reduce Hsp82p function while over expression suppresses the phenotypes of an HSP82 ts allele and a cpr7 deletion"	Verified	chr2:549765-550922	549765-550922	98.3%	195.02	101.02	126.50	112.45	47.44	28.11	148.02	119.47	37.77	0.55	0.48	0.16	-1.66	-1.25	Covered/w/another[394]
YBR156C	SLI15	"Subunit of the Ipl1p-Sli15p-Bir1p complex that regulates kinetochore-microtubule attachments, activation of the spindle tension checkpoint, and mitotic spindle disassembly; regulates the activity and localization of the Ipl1p aurora kinase"	Verified	chr2:551098-553194	551098-553194	99.1%	76.47	86.57	65.41	68.78	51.46	51.46	81.52	67.10	51.46	0.30	0.27	0.21	-0.38	0.01	Covered/w/another[394]
YBR157C	ICS2	"Protein of unknown function; null mutation does not confer any obvious defects in growth, spore germination, viability, or carbohydrate utilization"	Verified	chr2:553537-554304	553537-554304	99.0%	169.71	303.90	178.92	148.66	439.40	298.64	236.80	163.79	369.02	0.87	0.66	1.53	1.17	1.37	Frag>80[395,396]
YBR158W	AMN1	"Protein required for daughter cell separation, multiple mitotic checkpoints, and chromosome stability; contains 12 degenerate leucine-rich repeat motifs; expression is induced by the Mitotic Exit Network (MEN)"	Verified	chr2:556543-558192	556543-558192	98.8%	674.69	607.84	550.18	472.28	394.39	269.88	641.26	511.23	332.13	2.37	2.08	1.38	-0.62	-0.49	Matched[398]
YBR159W		"Microsomal beta-keto-reductase; contains oleate response element (ORE) sequence in the promoter region; mutants exhibit reduced VLCFA synthesis, accumulate high levels of dihydrosphingosine, phytosphingosine and medium-chain ceramides"	Verified	chr2:558679-559722	558679-559722	98.9%	846.45	850.33	838.71	843.55	748.64	558.82	848.39	841.13	653.73	3.13	3.41	2.71	-0.36	-0.32	Matched[399]
YBR160W	CDC28	Catalytic subunit of the main cell cycle cyclin-dependent kinase (CDK); alternately associates with G1 cyclins (CLNs) and G2/M cyclins (CLBs) which direct the CDK to specific substrates	Verified	chr2:560072-560968	560072-560968	98.7%	211.20	160.38	228.14	225.88	324.14	220.24	185.79	227.01	272.19	0.69	0.92	1.13	0.26	0.62	Matched[400]
YBR161W	CSH1	"Probable catalytic subunit of a mannosylinositol phosphorylceramide (MIPC) synthase, forms a complex with probable regulatory subunit Csg2p; function in sphingolipid biosynthesis is overlapping with that of Sur1p"	Verified	chr2:561629-562759	561629-562759	98.9%	122.50	136.81	148.44	134.13	355.89	255.74	129.66	141.28	305.81	0.48	0.57	1.27	1.11	1.22	Matched[402]
YBR162C	TOS1	"Covalently-bound cell wall protein of unknown function; identified as a cell cycle regulated SBF target gene; deletion mutants are highly resistant to treatment with beta-1,3-glucanase; has sequence similarity to YJL171C"	Verified	chr2:563198-564565	563198-564565	98.6%	3197.63	2946.98	3086.39	2887.65	1112.35	1108.64	3072.30	2987.02	1110.49	11.34	12.12	4.60	-1.43	-0.89	Frag>80[403,404,405]
YBR162W-A	YSY6	Protein whose expression suppresses a secretory pathway mutation in E. coli; has similarity to the mammalian RAMP4 protein involved in secretion	Verified	chr2:565226-565423	565226-565423	98.4%	1098.84	996.15	1032.09	836.97	616.17	344.03	1047.50	934.53	480.10	3.87	3.79	1.99	-0.96	-1.63	Matched[406]
YBR163W	DEM1	"Protein of unknown function, shows similarity to RNA-processing protein Pta1p"	Verified	chr2:565718-567475	565718-567475	99.0%	157.51	134.51	121.87	99.45	70.13	52.31	146.01	110.66	61.22	0.54	0.45	0.25	-0.85	-0.62	Matched[407]
YBR164C	ARL1	"Soluble GTPase with a role in regulation of membrane traffic; regulates potassium influx; G protein of the Ras superfamily, similar to ADP-ribosylation factor"	Verified	chr2:567870-568421	567870-568421	99.3%	655.01	552.84	691.50	567.43	521.82	348.49	603.92	629.47	435.15	2.23	2.56	1.80	-0.53	-0.70	Matched[408]
YBR165W	UBS1	Ubiquitin-conjugating enzyme suppressor that functions as a general positive regulator of Cdc34p activity; nuclear protein that may represent a link between nucleocytoplasmic transport and ubiquitin ligase activity	Verified	chr2:568847-569680	568847-569680	98.9%	111.57	84.89	124.91	98.23	154.01	94.59	98.23	111.57	124.30	0.36	0.45	0.52	0.16	0.24	Covered/w/another[409]
YBR166C	TYR1	"Prephenate dehydrogenase involved in tyrosine biosynthesis, expression is dependent on phenylalanine levels"	Verified	chr2:569837-571195	569837-571195	99.3%	174.20	219.42	181.61	170.49	142.32	99.33	196.81	176.05	120.83	0.73	0.71	0.50	-0.54	-0.62	Covered/w/another[409]
YBR167C	POP7	"Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends"	Verified	chr2:571463-571885	571463-571885	99.4%	95.12	121.27	116.52	90.36	107.00	85.60	108.19	103.44	96.30	0.40	0.42	0.40	-0.10	0.00	Covered/w/another[410]
YBR168W	PEX32	"Peroxisomal integral membrane protein, involved in negative regulation of peroxisome size; partially functionally redundant with Pex31p; genetic interactions suggest action at a step downstream of steps mediated by Pex28p and Pex29p"	Verified	chr2:572366-573607	572366-573607	98.9%	70.84	95.26	87.94	78.98	116.43	87.12	83.05	83.46	101.78	0.31	0.34	0.42	0.29	0.86	Covered/w/another[410]
YBR169C	SSE2	Member of the heat shock protein 70 (HSP70) family; may be involved in protein folding; localized to the cytoplasm; highly homologous to the heat shock protein Sse1p	Verified	chr2:573910-575991	573910-575991	98.9%	109.28	264.71	151.05	203.02	2142.43	2305.14	187.00	177.04	2223.79	0.69	0.72	9.21	3.65	3.49	Frag>80[411,412]
YBR170C	NPL4	"Endoplasmic reticulum and nuclear membrane protein, forms a complex with Cdc48p and Ufd1p that recognizes ubiquitinated proteins in the endoplasmic reticulum and delivers them to the proteasome for degradation"	Verified	chr2:576339-578081	576339-578081	99.2%	123.80	109.34	112.81	102.98	248.76	172.40	116.57	107.89	210.58	0.43	0.44	0.87	0.96	0.89	Matched[413]
YBR171W	SEC66	"Non-essential subunit of Sec63 complex (Sec63p, Sec62p, Sec66p and Sec72p); with Sec61 complex, Kar2p/BiP and Lhs1p forms a channel competent for SRP-dependent and post-translational SRP-independent protein targeting and import into the ER"	Verified	chr2:578359-578979	578359-578979	98.6%	620.79	517.87	537.47	499.90	442.72	261.38	569.33	518.68	352.05	2.10	2.11	1.46	-0.56	-0.63	Matched[414]
YBR172C	SMY2	Protein of unknown function that interacts with Myo2p; has similarity to S. pombe Mpd2	Verified	chr2:579145-581367	579145-581367	98.9%	237.39	226.93	187.82	178.72	72.76	60.03	232.16	183.27	66.40	0.86	0.74	0.28	-1.46	-0.85	Matched[415]
YBR173C	UMP1	Short-lived chaperone required for correct maturation of the 20S proteasome; may inhibit premature dimerization of proteasome half-mers; degraded by proteasome upon completion of its assembly	Verified	chr2:581721-582167	581721-582167	98.7%	578.23	487.53	526.08	444.44	884.35	455.78	532.88	485.26	670.07	1.97	1.97	2.78	0.47	0.63	Matched[416]
YBR175W	SWD3	"Essential subunit of the COMPASS (Set1C) complex, which methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres; WD40 beta propeller superfamily member and ortholog of mammalian WDR5"	Verified	chr2:582403-583350	582403-583350	98.7%	125.03	107.93	107.93	80.15	125.03	67.33	116.48	94.04	96.18	0.43	0.38	0.40	0.03	-0.27	Covered/w/another[417]
YBR174C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF YBR175W; null mutant is viable and sporulation defective"	Dubious	chr2:582333-582647	582333-582647	99.0%	83.41	44.91	54.54	44.91	67.37	64.16	64.16	49.73	65.77	0.24	0.20	0.27	0.40	-0.56	Covered/w/another[417]
YBR176W	ECM31	"Ketopantoate hydroxymethyltransferase, required for pantothenic acid biosynthesis, converts 2-oxoisovalerate into 2-dehydropantoate"	Verified	chr2:583715-584653	583715-584653	98.9%	104.50	90.50	99.12	65.72	129.28	100.19	97.50	82.42	114.74	0.36	0.33	0.48	0.48	0.49	Covered/w/another[417]
YBR178W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YBR177C"	Dubious	chr2:586066-586440	586066-586440	98.8%	64.75	37.77	102.52	83.63	148.38	175.36	51.26	93.08	161.87	0.19	0.38	0.67	0.80	1.05	
YBR177C	EHT1	Acyl-coenzymeA:ethanol O-acyltransferase that plays a minor role in medium-chain fatty acid ethyl ester biosynthesis; contains esterase activity; localizes to lipid particles and the mitochondrial outer membrane	Verified	chr2:584802-586157	584802-586157	98.9%	346.58	205.71	417.39	452.42	716.27	766.96	276.15	434.91	741.61	1.02	1.77	3.07	0.77	1.21	Matched[418]
YBR179C	FZO1	Mitochondrial integral membrane protein involved in mitochondrial fusion and maintenance of the mitochondrial genome; contains N-terminal GTPase domain	Verified	chr2:586542-589109	586542-589109	99.1%	122.58	99.40	106.08	118.26	101.76	83.68	110.99	112.17	92.72	0.41	0.46	0.38	-0.27	0.28	Matched[419]
YBR180W	DTR1	"Multidrug resistance dityrosine transporter of the major facilitator superfamily, essential for spore wall synthesis, facilitates the translocation of bisformyl dityrosine through the prospore membrane"	Verified	chr2:589736-591454	589736-591454	99.0%	8.23	5.88	5.29	5.29	7.64	4.70	7.05	5.29	6.17	0.03	0.02	0.03	0.22	-0.40	
YBR181C	RPS6B	Protein component of the small (40S) ribosomal subunit; identical to Rps6Ap and has similarity to rat S6 ribosomal protein	Verified	chr2:591707-592769	591707-592411,592764-592769	12.8%	5654.16	4193.96	5357.73	3930.47	1251.60	845.38	4924.06	4644.10	1048.49	18.18	18.85	4.34	-2.15	-2.66	Frag<80[420,421,422]
YBR182C	SMP1	Putative transcription factor involved in regulating the response to osmotic stress; member of the MADS-box family of transcription factors	Verified	chr2:593501-594859	593501-594859	98.9%	15.62	12.64	11.16	10.41	28.26	14.13	14.13	10.78	21.20	0.05	0.04	0.09	0.97	0.78	
YBR182C-A		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr2:595356-595550	595356-595550	99.2%	10.34	5.17	5.17	5.17	15.51	20.68	7.75	5.17	18.09	0.03	0.02	0.07	1.81	NaN	
YBR183W	YPC1	"Alkaline ceramidase that also has reverse (CoA-independent) ceramide synthase activity, catalyzes both breakdown and synthesis of phytoceramide; overexpression confers fumonisin B1 resistance"	Verified	chr2:596110-597060	596110-597060	98.8%	112.77	157.45	203.19	185.11	668.09	465.96	135.11	194.15	567.02	0.50	0.79	2.35	1.55	1.39	Matched[423]
YBR184W		Putative protein of unknown function; YBR184W is not an essential gene	Uncharacterized	chr2:597358-598929	597358-598929	98.8%	34.11	19.95	28.32	21.24	29.61	23.82	27.03	24.78	26.71	0.10	0.10	0.11	0.11	-0.31	Matched[424]
YBR185C	MBA1	Protein involved in assembly of mitochondrial respiratory complexes; may act as a receptor for proteins destined for export from the mitochondrial matrix to the inner membrane	Verified	chr2:599118-599954	599118-599954	99.1%	166.37	172.39	189.27	202.53	268.84	173.60	169.38	195.90	221.22	0.63	0.80	0.92	0.18	-0.02	Matched[425]
YBR186W	PCH2	"Nucleolar component of the pachytene checkpoint, which prevents chromosome segregation when recombination and chromosome synapsis are defective; also represses meiotic interhomolog recombination in the rDNA"	Verified	chr2:600548-602355	600548-602098,602212-602355	98.7%	32.28	34.67	19.13	25.10	28.09	14.35	33.47	22.12	21.22	0.12	0.09	0.09	-0.06	1.59	Frag<80[426,427]
YBR187W	GDT1	Putative protein of unknown function; expression is reduced in a gcr1 null mutant; GFP-fusion protein localizes to the vacuole; expression pattern and physical interactions suggest a possible role in ribosome biogenesis	Uncharacterized	chr2:602629-603471	602629-603471	98.8%	798.60	714.54	719.34	548.81	294.22	145.31	756.57	634.08	219.76	2.79	2.57	0.91	-1.53	-1.55	Matched[428]
YBR188C	NTC20	"Member of a complex, including Prp19p, that binds to the spliceosome; required for pre-mRNA splicing"	Verified	chr2:603680-604102	603680-604102	99.3%	135.77	150.06	157.21	181.02	154.82	78.60	142.91	169.11	116.71	0.53	0.69	0.48	-0.54	-0.50	Matched[429]
YBR189W	RPS9B	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps9Ap and has similarity to E. coli S4 and rat S9 ribosomal proteins	Verified	chr2:604503-605503	604503-604509,604923-605503	70.4%	11601.53	9669.55	10208.09	8725.30	1555.24	1557.66	10635.54	9466.69	1556.45	39.26	38.43	6.45	-2.60	-2.82	Matched[430]
YBR190W		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data; partially overlaps the verified ribosomal protein gene RPL21A/YBR191W"	Dubious	chr2:605961-606272	605961-606272	98.3%	61.97	32.62	58.71	29.36	26.09	16.31	47.30	44.03	21.20	0.17	0.18	0.09	-1.05	-1.65	Overlap[431]
YBR191W	RPL21A	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl21Bp and has similarity to rat L21 ribosomal protein"	Verified	chr2:606265-607135	606265-606275,606664-607135	57.5%	10289.83	8360.04	9332.13	7751.57	1620.16	1173.72	9324.93	8541.85	1396.94	34.42	34.67	5.79	-2.61	-2.11	Matched[431]
YBR191W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr2:607144-607218	607144-607218	99.8%	6651.08	4661.10	4968.28	4514.19	1015.03	534.22	5656.09	4741.23	774.62	20.88	19.25	3.21	-2.61	NaN	Covered/w/another[431]
YBR192W	RIM2	Mitochondrial pyrimidine nucleotide transporter; imports pyrimidine nucleoside triphosphates and exports pyrimidine nucleoside monophosphates; member of the mitochondrial carrier family	Verified	chr2:607647-608780	607647-608780	98.6%	178.05	171.79	151.21	136.00	78.74	54.58	174.92	143.60	66.66	0.65	0.58	0.28	-1.11	-0.74	Matched[432]
YBR193C	MED8	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation	Verified	chr2:609077-609748	609077-609748	98.8%	96.42	100.94	120.52	106.96	219.95	129.56	98.68	113.74	174.75	0.36	0.46	0.72	0.62	0.22	Matched[433]
YBR194W		Protein proposed to be associated with the nuclear pore complex	Uncharacterized	chr2:610033-610404	610033-610404	98.4%	101.12	68.32	81.99	71.05	210.43	71.05	84.72	76.52	140.74	0.31	0.31	0.58	0.88	0.68	Matched[434]
YBR195C	MSI1	"Subunit of chromatin assembly factor I (CAF-1), negative regulator of the RAS/cAMP pathway via sequestration of Npr1p kinase; localizes to the nucleus and cytoplasm; homologous to human retinoblastoma binding proteins RbAp48 and RbAp46"	Verified	chr2:610609-611877	610609-611877	98.9%	94.02	108.36	94.02	84.46	49.40	31.87	101.19	89.24	40.64	0.37	0.36	0.17	-1.13	-0.55	Matched[435]
YBR196C	PGI1	"Glycolytic enzyme phosphoglucose isomerase, catalyzes the interconversion of glucose-6-phosphate and fructose-6-phosphate; required for cell cycle progression and completion of the gluconeogenic events of sporulation"	Verified	chr2:612231-613895	612231-613895	98.6%	6232.48	6080.84	5678.30	5527.87	3363.50	3163.74	6156.66	5603.09	3263.62	22.73	22.74	13.52	-0.78	-1.55	Frag>80[436,437]
YBR196C-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr2:614019-614168	614019-614168	98.6%	47.32	27.04	6.76	40.56	6.76	0.00	37.18	23.66	3.38	0.14	0.10	0.01	-2.81	NaN	Covered/w/another[437]
YBR196C-B		Putative protein of unknown function; identified by expression profiling and mass spectrometry	Uncharacterized	chr2:614521-614625	614521-614625	99.0%	125.05	57.72	38.48	48.10	9.62	0.00	91.38	43.29	4.81	0.34	0.18	0.02	-3.17	NaN	Covered/w/another[438]
YBR197C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YBR197C is not an essential gene	Uncharacterized	chr2:615198-615851	615198-615851	98.8%	133.09	191.90	119.16	105.24	91.31	58.81	162.50	112.20	75.06	0.60	0.46	0.31	-0.58	-0.33	Covered/w/another[438]
YBR198C	TAF5	"Subunit (90 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation and in chromatin modification"	Verified	chr2:616122-618518	616122-618518	99.1%	203.75	195.33	169.65	174.28	129.66	118.29	199.54	171.96	123.97	0.74	0.70	0.51	-0.47	0.11	Covered/w/another[438]
YBR199W	KTR4	Putative mannosyltransferase involved in protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family	Verified	chr2:618904-620298	618904-620298	98.7%	514.04	651.26	640.37	632.38	859.63	573.57	582.65	636.37	716.60	2.15	2.58	2.97	0.17	0.55	Matched[439]
YBR200W	BEM1	"Protein containing SH3-domains, involved in establishing cell polarity and morphogenesis; functions as a scaffold protein for complexes that include Cdc24p, Ste5p, Ste20p, and Rsr1p"	Verified	chr2:620867-622522	620867-622522	98.7%	149.88	178.63	143.15	157.22	146.21	133.98	164.26	150.19	140.09	0.61	0.61	0.58	-0.10	0.11	Matched[440]
YBR200W-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr2:622978-623142	622978-623142	98.6%	0.00	30.73	6.15	0.00	12.29	6.15	15.36	3.07	9.22	0.06	0.01	0.04	1.58	NaN	
YBR201W	DER1	"Endoplasmic reticulum membrane protein, required for ER-associated protein degradation of misfolded or unassembled proteins; N- and C- termini protrude into the cytoplasm, has similarity to Dfm1p"	Verified	chr2:623572-624207	623572-624207	99.0%	96.93	136.65	131.89	119.17	343.22	173.20	116.79	125.53	258.21	0.43	0.51	1.07	1.04	0.76	Matched[441]
YBR201C-A		Putative protein of unknown function	Uncharacterized	chr2:624489-624692	624489-624692	98.9%	54.52	208.18	64.44	74.35	84.26	74.35	131.35	69.39	79.31	0.48	0.28	0.33	0.19	NaN	Matched[442]
YBR202W	MCM7	"Component of the hexameric MCM complex, which is important for priming origins of DNA replication in G1 and becomes an active ATP-dependent helicase that promotes DNA melting and elongation when activated by Cdc7p-Dbf4p in S-phase"	Verified	chr2:625767-628304	625767-628304	98.1%	124.14	141.41	118.11	105.66	55.84	48.61	132.77	111.88	52.23	0.49	0.45	0.22	-1.10	-0.41	Matched[443]
YBR203W	COS111	"Protein required for resistance to the antifungal drug ciclopirox olamine; not related to the subtelomerically-encoded COS family; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr2:629163-631937	629163-631937	98.8%	26.25	36.82	42.66	58.34	59.79	57.97	31.54	50.50	58.88	0.12	0.20	0.24	0.22	0.41	Matched[444]
YBR204C		Serine hydrolase; YBR204C is not an essential gene	Uncharacterized	chr2:632249-633376	632249-633376	99.2%	190.38	247.58	201.10	213.62	402.20	260.99	218.98	207.36	331.60	0.81	0.84	1.37	0.68	0.76	Matched[445]
YBR205W	KTR3	"Putative alpha-1,2-mannosyltransferase involved in O- and N-linked protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family"	Verified	chr2:633617-634831	633617-634831	98.8%	568.69	521.23	546.21	565.36	338.88	335.55	544.96	555.79	337.22	2.01	2.26	1.40	-0.72	-0.21	Matched[446]
YBR206W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene KTR3"	Dubious	chr2:634596-634919	634596-634919	99.3%	758.75	736.98	659.24	730.76	469.55	376.26	747.86	695.00	422.91	2.76	2.82	1.75	-0.72	-0.14	Covered/w/another[446]
YBR207W	FTH1	Putative high affinity iron transporter involved in transport of intravacuolar stores of iron; forms complex with Fet5p; expression is regulated by iron; proposed to play indirect role in endocytosis	Verified	chr2:635141-636538	635141-636538	98.7%	207.18	139.08	220.22	200.66	197.04	168.06	173.13	210.44	182.55	0.64	0.85	0.76	-0.21	0.10	Matched[447]
YBR208C	"DUR1,2"	"Urea amidolyase, contains both urea carboxylase and allophanate hydrolase activities, degrades urea to CO2 and NH3; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation"	Verified	chr2:636698-642205	636698-642205	99.0%	147.80	196.39	151.65	203.18	20.72	18.34	172.10	177.41	19.53	0.64	0.72	0.08	-3.18	-1.68	Frag>80[448,449,450]
YBR209W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; YBR209W is not an essential gene"	Dubious	chr2:642578-642895	642578-642895	98.5%	6.38	12.77	6.38	9.58	70.22	22.34	9.58	7.98	46.28	0.04	0.03	0.19	2.54	0.02	Frag<80[450]
YBR210W	ERV15	"Protein involved in export of proteins from the endoplasmic reticulum, has similarity to Erv14p"	Verified	chr2:645545-645973	645545-645973	98.9%	238.07	268.71	245.14	190.93	228.64	120.21	253.39	218.03	174.43	0.94	0.89	0.72	-0.32	-0.29	Matched[452]
YBR211C	AME1	"Essential kinetochore protein associated with microtubules and spindle pole bodies; component of the kinetochore sub-complex COMA (Ctf19p, Okp1p, Mcm21p, Ame1p); involved in spindle checkpoint maintenance"	Verified	chr2:646153-647127	646153-647127	99.2%	94.05	86.82	114.72	75.45	151.93	91.99	90.44	95.09	121.96	0.33	0.39	0.51	0.36	0.18	Matched[453]
YBR212W	NGR1	RNA binding protein that negatively regulates growth rate; interacts with the 3' UTR of the mitochondrial porin (POR1) mRNA and enhances its degradation; overexpression impairs mitochondrial function; expressed in stationary phase	Verified	chr2:647881-649899	647881-649899	98.4%	177.13	182.16	245.06	212.86	310.48	283.31	179.65	228.96	296.89	0.66	0.93	1.23	0.37	0.69	Matched[454]
YBR213W	MET8	"Bifunctional dehydrogenase and ferrochelatase, involved in the biosynthesis of siroheme, a prosthetic group used by sulfite reductase; required for sulfate assimilation and methionine biosynthesis"	Verified	chr2:650363-651187	650363-651187	98.3%	57.96	40.69	38.23	27.13	25.90	14.80	49.32	32.68	20.35	0.18	0.13	0.08	-0.68	-0.46	Matched[455]
YBR214W	SDS24	"One of two S. cerevisiae homologs (Sds23p and Sds24p) of the Schizosaccharomyces pombe Sds23 protein, which genetic studies have implicated in APC/cyclosome regulation; may play an indirect role in fluid-phase endocytosis"	Verified	chr2:651410-652993	651410-652993	98.8%	222.90	438.77	448.35	464.95	1380.81	1530.26	330.83	456.65	1455.53	1.22	1.85	6.03	1.67	1.85	Frag>80[456,457]
YBR215W	HPC2	"Highly charged, basic protein required for normal cell-cycle regulation of histone gene transcription; mutants display strong synthetic defects with subunits of FACT, a complex that allows RNA Pol II to elongate through nucleosomes"	Verified	chr2:653351-655312	653351-653363,653448-655312	98.7%	145.13	121.93	110.06	127.32	101.97	84.70	133.53	118.69	93.33	0.49	0.48	0.39	-0.35	0.05	Covered/w/another[458]
YBR216C	YBP1	"Protein required for oxidation of specific cysteine residues of the transcription factor Yap1p, resulting in the nuclear localization of Yap1p in response to stress"	Verified	chr2:655571-657595	655571-657595	99.2%	87.09	82.12	78.63	89.58	132.88	116.46	84.61	84.11	124.67	0.31	0.34	0.52	0.57	0.79	Covered/w/another[458]
YBR217W	ATG12	"Ubiquitin-like modifier, conjugated via an isopeptide bond to a lysine residue of Atg5p by the E1 enzyme, Atg7p, and the E2 enzyme, Atg10p, a step that is essential for autophagy"	Verified	chr2:657827-658387	657827-658387	98.7%	81.29	92.13	101.17	81.29	135.49	59.62	86.71	91.23	97.55	0.32	0.37	0.40	0.10	-0.10	Matched[459]
YBR218C	PYC2	"Pyruvate carboxylase isoform, cytoplasmic enzyme that converts pyruvate to oxaloacetate; highly similar to isoform Pyc1p but differentially regulated; mutations in the human homolog are associated with lactic acidosis"	Verified	chr2:658702-662244	658702-662244	78.8%	537.46	775.93	527.43	601.55	310.80	405.69	656.69	564.49	358.24	2.42	2.29	1.48	-0.66	-0.35	Frag>80[460,461,462]
YBR219C		Putative protein of unknown function; YBR219C is not an essential gene	Uncharacterized	chr2:662494-663298	662494-662576,662998-663298	98.6%	176.94	174.30	198.06	153.17	71.30	52.82	175.62	175.62	62.06	0.65	0.71	0.26	-1.50	-0.06	Frag<80[461,462]
YBR220C		Putative protein of unknown function; YBR220C is not an essential gene	Uncharacterized	chr2:662990-664672	662990-664672	98.9%	171.91	150.87	165.90	143.66	70.33	54.10	161.39	154.78	62.21	0.60	0.63	0.26	-1.31	-1.22	Matched[463]
YBR221C	PDB1	"E1 beta subunit of the pyruvate dehydrogenase (PDH) complex, which is an evolutionarily-conserved multi-protein complex found in mitochondria"	Verified	chr2:665148-666248	665148-666248	98.8%	1763.85	1928.38	1956.88	1984.45	1412.74	1252.81	1846.12	1970.66	1332.77	6.81	8.00	5.52	-0.56	-0.12	Frag>80[464,465,466]
YBR221W-A		Putative protein of unknown function; identified by expression profiling and mass spectrometry	Uncharacterized	chr2:666533-666637	666533-666637	98.2%	48.48	29.09	19.39	48.48	29.09	48.48	38.79	33.94	38.79	0.14	0.14	0.16	0.19	NaN	Matched[466]
YBR222C	PCS60	"Peroxisomal AMP-binding protein, localizes to both the peroxisomal peripheral membrane and matrix, expression is highly inducible by oleic acid, similar to E. coli long chain acyl-CoA synthetase"	Verified	chr2:666715-668346	666715-668346	98.7%	297.45	323.53	299.31	294.96	268.26	252.74	310.49	297.14	260.50	1.15	1.21	1.08	-0.19	0.24	Frag>80[466,467]
YBR223W-A		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps YBR223C; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr2:668716-668835	668716-668835	98.6%	50.70	59.15	42.25	59.15	50.70	59.15	54.93	50.70	54.93	0.20	0.21	0.23	0.12	NaN	Covered/w/another[468]
YBR224W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene TDP1"	Dubious	chr2:670120-670635	670120-670635	99.1%	15.65	15.65	23.47	29.34	21.51	37.16	15.65	26.40	29.34	0.06	0.11	0.12	0.15	1.70	Overlap[468,469]
YBR223C	TDP1	"Tyrosyl-DNA Phosphodiesterase I, hydrolyzes 3'-phosphotyrosyl bonds to generate 3'-phosphate DNA and tyrosine, involved in the repair of DNA lesions created by topoisomerase I"	Verified	chr2:668658-670292	668658-670292	98.9%	50.71	58.75	64.94	59.99	58.75	68.03	54.73	62.46	63.39	0.20	0.25	0.26	0.02	0.87	Matched[468]
YBR225W		Putative protein of unknown function; non-essential gene identified in a screen for mutants affected in mannosylphophorylation of cell wall components	Uncharacterized	chr2:670622-673324	670622-673324	98.9%	63.94	65.06	63.19	64.68	62.81	88.99	64.50	63.94	75.90	0.24	0.26	0.31	0.25	0.88	Covered/w/another[469]
YBR226C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YBR225W"	Dubious	chr2:673150-673560	673150-673560	99.2%	66.24	76.06	85.87	63.79	115.31	117.77	71.15	74.83	116.54	0.26	0.30	0.48	0.64	0.47	Covered/w/another[469]
YBR227C	MCX1	"Mitochondrial ATP-binding protein, possibly a mitochondrial chaperone with non-proteolytic function; similar to bacterial ClpX proteins"	Verified	chr2:673567-675129	673567-675129	99.3%	179.68	177.10	141.68	150.05	141.68	89.52	178.39	145.87	115.60	0.66	0.59	0.48	-0.34	0.03	Covered/w/another[469]
YBR228W	SLX1	"Subunit of a complex, with Slx4p, that hydrolyzes 5' branches from duplex DNA in response to stalled or converging replication forks; function overlaps with that of Sgs1p-Top3p"	Verified	chr2:675308-676222	675308-676222	98.5%	83.21	104.29	73.22	59.91	106.51	68.79	93.75	66.57	87.65	0.35	0.27	0.36	0.40	0.48	Matched[470]
YBR229C	ROT2	"Glucosidase II catalytic subunit required for normal cell wall synthesis; mutations in rot2 suppress tor2 mutations, and are synthetically lethal with rot1 mutations"	Verified	chr2:676352-679216	676352-679216	98.9%	201.50	223.38	201.50	217.38	188.80	203.27	212.44	209.44	196.03	0.78	0.85	0.81	-0.10	0.35	Matched[471]
YBR230C	OM14	Integral mitochondrial outer membrane protein; abundance is decreased in cells grown in glucose relative to other carbon sources; appears to contain 3 alpha-helical transmembrane segments; ORF encodes a 97-basepair intron	Verified	chr2:679544-680045	679544-679937,680035-680045	98.5%	303.42	318.46	656.98	591.79	4057.26	2011.08	310.94	624.39	3034.17	1.15	2.53	12.57	2.28	1.64	Matched[472]
YBR230W-A		Putative protein of unknown function	Uncharacterized	chr2:680357-680557	680357-680557	97.8%	249.21	345.84	269.55	300.06	971.39	625.56	297.52	284.81	798.47	1.10	1.16	3.31	1.49	NaN	Matched[473]
YBR231C	SWC5	"Protein of unknown function, component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A"	Verified	chr2:682174-683085	682174-683085	99.1%	88.54	92.97	97.39	68.62	94.07	111.78	90.75	83.01	102.93	0.34	0.34	0.43	0.31	0.34	Matched[476]
YBR233W	PBP2	"RNA binding protein with similarity to mammalian heterogeneous nuclear RNP K protein, involved in the regulation of telomere position effect and telomere length"	Verified	chr2:683423-684664	683423-684664	98.8%	149.90	128.72	127.09	99.39	141.75	94.50	139.31	113.24	118.13	0.51	0.46	0.49	0.06	0.56	Matched[477]
YBR232C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr2:683368-683727	683368-683727	98.9%	87.09	78.66	98.33	81.47	78.66	50.57	82.87	89.90	64.61	0.31	0.36	0.27	-0.48	0.00	Covered/w/another[477]
YBR233W-A	DAD3	"Essential subunit of the Dam1 complex (aka DASH complex), couples kinetochores to the force produced by MT depolymerization thereby aiding in chromosome segregation; is transferred to the kinetochore prior to mitosis"	Verified	chr2:684972-685256	684972-685256	98.4%	246.06	263.89	274.59	228.23	156.91	78.45	254.98	251.41	117.68	0.94	1.02	0.49	-1.10	-1.17	Matched[478]
YBR234C	ARC40	"Subunit of the ARP2/3 complex, which is required for the motility and integrity of cortical actin patches"	Verified	chr2:685433-686587	685433-686587	98.9%	674.89	701.15	696.77	621.49	901.60	760.67	688.02	659.13	831.13	2.54	2.68	3.44	0.33	0.64	Matched[479]
YBR235W		"Putative ion transporter, similar to mammalian electroneutral Na(+)-(K+)-C1- cotransporter family; YBR235W is not an essential gene"	Uncharacterized	chr2:686896-690258	686896-690258	98.9%	105.25	109.76	92.02	71.87	64.35	47.51	107.51	81.95	55.93	0.40	0.33	0.23	-0.55	0.04	Frag>80[480]
YBR236C	ABD1	"Methyltransferase, catalyzes the transfer of a methyl group from S-adenosylmethionine to the GpppN terminus of capped mRNA"	Verified	chr2:690378-691688	690378-691688	99.2%	153.02	159.94	142.25	154.56	227.60	168.40	156.48	148.40	198.00	0.58	0.60	0.82	0.42	0.18	Matched[481]
YBR237W	PRP5	"RNA helicase in the DEAD-box family, necessary for prespliceosome formation, bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA"	Verified	chr2:691964-694513	691964-694513	98.5%	88.77	93.55	82.01	72.85	73.25	66.48	91.16	77.43	69.86	0.34	0.31	0.29	-0.15	0.17	Matched[482]
YBR238C		Mitochondrial membrane protein with similarity to Rmd9p; not required for respiratory growth but causes a synthetic respiratory defect in combination with rmd9 mutations; transcriptionally up-regulated by TOR; deletion increases life span	Verified	chr2:695102-697297	695102-697297	98.9%	82.40	96.68	46.96	36.83	4.60	19.80	89.54	41.89	12.20	0.33	0.17	0.05	-1.78	-1.00	Frag>80[483]
YBR239C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YBR239C is not an essential gene	Uncharacterized	chr2:698349-699938	698349-699938	98.8%	67.49	99.96	51.57	47.12	65.58	41.39	83.73	49.34	53.48	0.31	0.20	0.22	0.12	0.60	Covered/w/another[484]
YBR240C	THI2	"Zinc finger protein of the Zn(II)2Cys6 type, probable transcriptional activator of thiamine biosynthetic genes"	Verified	chr2:700485-701837	700485-701837	98.8%	14.21	18.70	10.47	11.22	24.68	40.39	16.45	10.84	32.53	0.06	0.04	0.13	1.58	1.11	Covered/w/another[484]
YBR241C		"Putative transporter, member of the sugar porter family; green fluorescent protein (GFP)-fusion protein localizes to the vacuolar membrane; YBR241C is not an essential gene"	Uncharacterized	chr2:702584-704050	702584-704050	98.3%	73.54	158.87	72.84	79.78	278.88	296.92	116.20	76.31	287.90	0.43	0.31	1.19	1.92	1.93	Matched[485]
YBR242W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YBR242W is not an essential gene	Uncharacterized	chr2:704665-705381	704665-705381	98.6%	237.74	185.38	192.45	165.57	70.75	63.68	211.56	179.01	67.22	0.78	0.73	0.28	-1.41	-1.42	Matched[486]
YBR243C	ALG7	"UDP-N-acetyl-glucosamine-1-P transferase, transfers Glc-Nac-P from UDP-GlcNac to Dol-P in the ER in the first step of the dolichol pathway of protein asparagine-linked glycosylation; inhibited by tunicamycin"	Verified	chr2:705442-706788	705442-706788	98.8%	226.10	177.28	226.85	195.31	144.23	114.93	201.69	211.08	129.58	0.74	0.86	0.54	-0.70	-0.51	Matched[487]
YBR244W	GPX2	Phospholipid hydroperoxide glutathione peroxidase induced by glucose starvation that protects cells from phospholipid hydroperoxides and nonphospholipid peroxides during oxidative stress	Verified	chr2:707523-708011	707523-708011	98.4%	700.44	66.51	544.56	228.63	232.79	91.45	383.48	386.59	162.12	1.42	1.57	0.67	-1.25	-1.37	Matched[488]
YBR245C	ISW1	"Member of the imitation-switch (ISWI) class of ATP-dependent chromatin remodeling complexes; ATPase that forms a complex with Ioc2p and Ioc4p to regulate transcription elongation, and a complex with Ioc3p to repress transcription initiation"	Verified	chr2:708145-711534	708145-711534	99.1%	210.47	151.83	186.06	165.82	100.32	105.68	181.15	175.94	103.00	0.67	0.71	0.43	-0.77	-0.42	Frag>80[489]
YBR246W		Putative protein of unknown function; deletion results in a weak carboxypeptidase Y missorting/secretion phenotype; YBR246W is not an essential gene	Uncharacterized	chr2:711586-712749	711586-712749	98.9%	233.63	184.13	204.97	179.79	163.28	127.67	208.88	192.38	145.48	0.77	0.78	0.60	-0.40	0.01	Matched[490]
YBR247C	ENP1	"Protein associated with U3 and U14 snoRNAs, required for pre-rRNA processing and 40S ribosomal subunit synthesis; localized in the nucleus and concentrated in the nucleolus"	Verified	chr2:712999-714450	712999-714450	99.1%	174.36	102.12	79.19	73.63	17.37	4.17	138.24	76.41	10.77	0.51	0.31	0.04	-2.83	-2.91	Matched[491]
YBR248C	HIS7	"Imidazole glycerol phosphate synthase (glutamine amidotransferase:cyclase), catalyzes the fifth and sixth steps of histidine biosynthesis and also produces 5-aminoimidazole-4-carboxamide ribotide (AICAR), a purine precursor"	Verified	chr2:714802-716460	714802-716460	99.2%	298.43	373.20	298.43	274.12	79.62	78.41	335.82	286.28	79.02	1.24	1.16	0.33	-1.86	-1.33	Frag>80[492,493,494]
YBR249C	ARO4	"3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase, catalyzes the first step in aromatic amino acid biosynthesis and is feedback-inhibited by tyrosine or high concentrations of phenylalanine or tryptophan"	Verified	chr2:716877-717989	716877-717989	98.7%	1437.56	1575.86	1287.44	1074.53	263.86	176.51	1506.71	1180.98	220.18	5.56	4.79	0.91	-2.42	-1.91	Frag>80[494,495,496]
YBR250W	SPO23	Protein of unknown function; associates with meiosis-specific protein Spo1p	Verified	chr2:719028-720599	719028-720599	99.1%	7.06	8.35	3.21	7.06	8.35	12.84	7.71	5.14	10.60	0.03	0.02	0.04	1.04	0.34	
YBR251W	MRPS5	Mitochondrial ribosomal protein of the small subunit	Verified	chr2:721385-722308	721385-722308	98.5%	229.58	231.77	262.53	209.80	259.23	246.05	230.67	236.17	252.64	0.85	0.96	1.05	0.10	0.24	Covered/w/another[497]
YBR252W	DUT1	"dUTPase, catalyzes hydrolysis of dUTP to dUMP and PPi, thereby preventing incorporation of uracil into DNA during replication; critical for the maintenance of genetic stability"	Verified	chr2:722606-723049	722606-723049	98.6%	440.72	347.10	411.04	395.05	205.52	155.28	393.91	403.04	180.40	1.45	1.64	0.75	-1.16	-1.35	Covered/w/another[497]
YBR253W	SRB6	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation	Verified	chr2:723265-723630	723265-723630	98.4%	405.32	421.98	366.45	327.59	433.08	249.86	413.65	347.02	341.47	1.53	1.41	1.41	-0.02	-0.13	Covered/w/another[497]
YBR254C	TRS20	One of 10 subunits of the transport protein particle (TRAPP) complex of the cis-Golgi which mediates vesicle docking and fusion; mutations in the human homolog cause the spondyloepiphyseal dysplasia tarda (SEDL) disorder	Verified	chr2:723731-724258	723731-724258	99.3%	162.14	123.99	123.99	120.17	116.36	53.41	143.06	122.08	84.88	0.53	0.50	0.35	-0.52	-0.86	Covered/w/another[497]
YBR255W		"Protein of unknown function, required for normal growth rate at 15 degrees C; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern"	Uncharacterized	chr2:724451-726535	724451-726535	98.6%	86.63	94.90	79.33	76.41	67.16	62.29	90.76	77.87	64.73	0.34	0.32	0.27	-0.27	0.04	Matched[498]
YBR255C-A		Putative protein of unknown function; identified by sequence comparison with hemiascomycetous yeast species	Uncharacterized	chr2:726613-727069	726613-726912,727007-727069	98.9%	264.65	231.22	234.01	186.65	197.79	64.07	247.94	210.33	130.93	0.92	0.85	0.54	-0.68	-0.54	Matched[499]
YBR256C	RIB5	Riboflavin synthase; catalyzes the last step of the riboflavin biosynthesis pathway	Verified	chr2:727381-728097	727381-728097	99.3%	508.19	905.47	512.40	452.04	1010.76	536.27	706.83	482.22	773.51	2.61	1.96	3.20	0.68	-0.14	Frag>80[499,500,501]
YBR257W	POP4	"Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends; binds to the RPR1 RNA subunit in Rnase P"	Verified	chr2:728880-729719	728880-729719	98.8%	99.97	98.77	95.15	66.25	71.06	36.13	99.37	80.70	53.60	0.37	0.33	0.22	-0.59	-1.10	Matched[502]
YBR258C	SHG1	"Subunit of the COMPASS (Set1C) complex, which methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres"	Verified	chr2:729729-730157	729729-730157	99.6%	126.37	138.07	145.09	109.98	163.81	88.92	132.22	127.54	126.37	0.49	0.52	0.52	-0.01	-0.40	Matched[503]
YBR259W		Putative protein of unknown function; YBR259W is not an essential gene	Uncharacterized	chr2:730382-732448	730382-732448	98.9%	60.64	55.75	47.92	47.43	39.61	25.43	58.19	47.68	32.52	0.21	0.19	0.13	-0.55	-0.36	Matched[504]
YBR260C	RGD1	"GTPase-activating protein (RhoGAP) for Rho3p and Rho4p, possibly involved in control of actin cytoskeleton organization"	Verified	chr2:732634-734634	732634-734634	99.0%	147.90	159.00	129.72	145.37	131.74	132.25	153.45	137.55	132.00	0.57	0.56	0.55	-0.06	0.42	Matched[505]
YBR261C		Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YBR261C is not an essential gene	Uncharacterized	chr2:734827-735525	734827-735525	99.0%	249.95	218.17	210.94	215.28	179.16	150.26	234.06	213.11	164.71	0.86	0.87	0.68	-0.37	-0.14	Matched[506]
YBR262C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr2:735715-736035	735715-736035	99.2%	392.57	389.43	364.30	414.55	474.22	279.51	391.00	389.43	376.86	1.44	1.58	1.56	-0.05	-0.61	Matched[507]
YBR263W	SHM1	"Mitochondrial serine hydroxymethyltransferase, involved in one-carbon metabolism"	Verified	chr2:736259-737731	736259-737731	98.7%	658.95	566.78	593.60	588.79	255.88	304.02	612.86	591.20	279.95	2.26	2.40	1.16	-1.08	-0.30	Matched[508]
YBR264C	YPT10	GTP binding protein that contains the PEST signal sequence specific for proteolytic enzymes; may be involved in vesicular transport; overexpression leads to accumulation of Golgi-like cisternae with budding vesicles	Verified	chr2:737765-738364	737765-738364	99.4%	219.75	213.04	219.75	186.20	228.14	149.30	216.40	202.98	188.72	0.80	0.82	0.78	-0.11	-0.16	Matched[509]
YBR265W	TSC10	"3-ketosphinganine reductase, catalyzes the second step in phytosphingosine synthesis, essential for growth in the absence of exogenous dihydrosphingosine or phytosphingosine, member of short chain dehydrogenase/reductase protein family"	Verified	chr2:738577-739539	738577-739539	98.5%	319.41	360.52	343.66	310.98	176.04	156.02	339.97	327.32	166.03	1.25	1.33	0.69	-0.98	-0.56	Matched[510]
YBR267W	REI1	"Cytoplasmic pre-60S factor; required for the correct recycling of shuttling factors Alb1, Arx1 and Tif6 at the end of the ribosomal large subunit biogenesis; involved in bud growth in the mitotic signaling network"	Verified	chr2:739836-741017	739836-741017	98.2%	171.39	123.16	106.80	81.82	12.06	6.03	147.28	94.31	9.04	0.54	0.38	0.04	-3.38	0.92	Matched[511]
YBR266C	SLM6	Protein with a potential role in actin cytoskeleton organization; gene exhibits synthetic genetic interaction with MSS4 encoding phosphatidylinositol 4-phosphate kinase	Dubious	chr2:739931-740383	739931-740383	98.2%	150.58	130.35	80.91	80.91	6.74	8.99	140.46	80.91	7.87	0.52	0.33	0.03	-3.36	-0.03	Matched[511]
YBR268W	MRPL37	Mitochondrial ribosomal protein of the large subunit	Verified	chr2:741294-741611	741294-741611	98.2%	506.21	438.93	515.82	410.09	429.32	272.33	472.57	462.96	350.82	1.74	1.88	1.45	-0.40	-1.19	Matched[512]
YBR269C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr2:742155-742571	742155-742571	98.9%	186.70	213.38	266.72	257.02	729.84	497.07	200.04	261.87	613.46	0.74	1.06	2.54	1.23	1.07	Matched[513]
YBR270C		Hypothetical protein	Uncharacterized	chr2:742756-744393	742756-744393	99.0%	46.86	66.59	45.01	29.60	36.99	23.43	56.72	37.30	30.21	0.21	0.15	0.13	-0.30	-0.15	Matched[514]
YBR271W		Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YBR271W is not as essential gene	Uncharacterized	chr2:744847-746106	744847-746106	98.6%	82.94	57.98	48.31	34.63	16.10	15.30	70.46	41.47	15.70	0.26	0.17	0.07	-1.40	-1.81	Matched[515]
YBR272C	HSM3	"Protein of unknown function, involved in DNA mismatch repair during slow growth; has weak similarity to Msh1p"	Verified	chr2:746356-747798	746356-747798	99.3%	88.61	101.87	101.87	90.01	169.54	133.96	95.24	95.94	151.75	0.35	0.39	0.63	0.66	0.66	Matched[516]
YBR273C	UBX7	UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p	Verified	chr2:748056-749366	748056-749366	99.1%	167.88	190.21	160.17	166.34	418.15	320.35	179.04	163.25	369.25	0.66	0.66	1.53	1.18	1.32	Frag>80[517,518]
YBR274W	CHK1	"Serine/threonine kinase and DNA damage checkpoint effector, mediates cell cycle arrest via phosphorylation of Pds1p; phosphorylated by checkpoint signal transducer Mec1p; homolog of S. pombe and mammalian Chk1 checkpoint kinase"	Verified	chr2:749589-751172	749589-751172	98.9%	109.19	121.33	95.78	94.51	138.57	118.77	115.26	95.14	128.67	0.43	0.39	0.53	0.44	0.41	Matched[519]
YBR275C	RIF1	Protein that binds to the Rap1p C-terminus and acts synergistically with Rif2p to help control telomere length and establish telomeric silencing; deletion results in telomere elongation	Verified	chr2:751351-757101	751351-757101	99.3%	78.46	61.65	54.82	51.31	17.69	18.21	70.05	53.07	17.95	0.26	0.22	0.07	-1.56	-0.96	Frag<80[520]
YBR276C	PPS1	"Protein phosphatase with specificity for serine, threonine, and tyrosine residues; has a role in the DNA synthesis phase of the cell cycle"	Verified	chr2:757616-760039	757616-760039	99.1%	254.32	205.62	221.44	191.47	123.62	136.94	229.97	206.46	130.28	0.85	0.84	0.54	-0.66	-0.37	Covered/w/another[521]
YBR278W	DPB3	"Third-largest subunit of DNA polymerase II (DNA polymerase epsilon), required to maintain fidelity of chromosomal replication and also for inheritance of telomeric silencing; mRNA abundance peaks at the G1/S boundary of the cell cycle"	Verified	chr2:760290-760895	760290-760895	98.4%	206.20	154.23	172.67	129.09	234.70	114.00	180.22	150.88	174.35	0.67	0.61	0.72	0.21	-0.07	Covered/w/another[521]
YBR277C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YBR278W"	Dubious	chr2:760211-760612	760211-760612	98.6%	133.74	100.94	105.98	121.12	138.79	88.32	117.34	113.55	113.55	0.43	0.46	0.47	0.00	0.06	Covered/w/another[521]
YBR279W	PAF1	RNAP II-associated protein; defines large complex biochemically and functionally distinct from the Srb-Mediator form of Pol II holoenzyme; required for full expression of a subset of cell cycle-regulated genes; homolog of human PD2/hPAF1	Verified	chr2:761253-762590	761253-762590	98.3%	342.98	306.47	337.65	337.65	574.92	393.93	324.73	337.65	484.43	1.20	1.37	2.01	0.52	0.90	Matched[522]
YBR280C	SAF1	F-Box protein involved in proteasome-dependent degradation of Aah1p during entry of cells into quiescence; interacts with Skp1	Verified	chr2:762780-764693	762780-764693	99.1%	51.67	51.14	64.32	51.67	284.18	238.84	51.41	58.00	261.51	0.19	0.24	1.08	2.17	1.76	Matched[523]
YBR281C	DUG2	Probable di- and tri-peptidase; forms a complex with Dug1p and Dug3p to degrade glutathione (GSH) and other peptides containing a gamma-glu-X bond in an alternative pathway to GSH degradation by gamma-glutamyl transpeptidase (Ecm38p)	Verified	chr2:764966-767602	764966-767602	99.2%	93.28	86.01	78.37	64.22	52.75	56.20	89.64	71.30	54.48	0.33	0.29	0.23	-0.39	0.13	Matched[524]
YBR282W	MRPL27	Mitochondrial ribosomal protein of the large subunit	Verified	chr2:768236-768676	768236-768676	98.4%	327.31	315.79	396.47	308.87	523.24	304.26	321.55	352.67	413.75	1.19	1.43	1.71	0.23	0.13	Matched[525]
YBR283C	SSH1	Subunit of the Ssh1 translocon complex; Sec61p homolog involved in co-translational pathway of protein translocation; not essential	Verified	chr2:768939-770411	768939-770411	98.9%	1248.88	1103.33	1180.91	1132.17	652.25	590.46	1176.11	1156.54	621.35	4.34	4.69	2.57	-0.90	-0.28	Matched[526]
YBR284W		Putative protein of unknown function; YBR284W is not an essential gene; null mutant exhibits decreased resistance to rapamycin and wortmannin	Uncharacterized	chr2:771235-773628	771235-773628	98.9%	19.42	18.58	12.67	11.40	48.56	28.71	19.00	12.03	38.63	0.07	0.05	0.16	1.68	1.72	Frag<80[527]
YBR285W		Putative protein of unknown function; YBR285W is not an essential gene and deletion of YBR285W leads to poor growth on glucose-minimal medium at 15C	Uncharacterized	chr2:773918-774352	773918-774352	98.8%	39.57	93.11	100.10	125.70	1652.76	1014.94	66.34	112.90	1333.85	0.24	0.46	5.53	3.56	3.10	Matched[528]
YBR286W	APE3	"Vacuolar aminopeptidase Y, processed to mature form by Prb1p"	Verified	chr2:774696-776309	774696-776309	98.8%	2619.65	3875.88	2941.23	3112.36	3919.14	4243.22	3247.77	3026.80	4081.18	11.99	12.29	16.91	0.43	0.63	Matched[529]
YBR287W		Protein of unknown function; mutation results in a zinc sensitive phenotype	Uncharacterized	chr2:776567-777850	776567-777850	99.0%	289.47	337.45	354.76	358.69	821.21	762.22	313.46	356.72	791.71	1.16	1.45	3.28	1.15	1.39	Matched[530]
YBR288C	APM3	Mu3-like subunit of the clathrin associated protein complex (AP-3); functions in transport of alkaline phosphatase to the vacuole via the alternate pathway	Verified	chr2:778008-779459	778008-779459	99.2%	228.43	188.16	195.79	162.47	154.14	102.06	208.29	179.13	128.10	0.77	0.73	0.53	-0.48	-0.48	Matched[531]
YBR289W	SNF5	Subunit of the SWI/SNF chromatin remodeling complex involved in transcriptional regulation; functions interdependently in transcriptional activation with Snf2p and Snf6p	Verified	chr2:779663-782380	779663-782380	95.4%	97.58	91.41	96.04	93.34	55.16	72.51	94.50	94.69	63.83	0.35	0.38	0.26	-0.57	0.57	Matched[532]
YBR290W	BSD2	"Heavy metal ion homeostasis protein, facilitates trafficking of Smf1p and Smf2p metal transporters to the vacuole where they are degraded, controls metal ion transport, prevents metal hyperaccumulation, functions in copper detoxification"	Verified	chr2:782587-783552	782587-783552	98.6%	155.43	193.24	173.29	191.14	442.15	253.11	174.34	182.22	347.63	0.64	0.74	1.44	0.93	0.76	Matched[533]
YBR291C	CTP1	"Mitochondrial inner membrane citrate transporter, member of the mitochondrial carrier family"	Verified	chr2:783669-784568	783669-784568	99.0%	106.61	117.83	93.15	58.36	68.46	31.42	112.22	75.75	49.94	0.41	0.31	0.21	-0.60	-0.40	Matched[534]
YBR292C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; YBR292C is not an essential gene"	Dubious	chr2:784698-785069	784698-785069	98.8%	16.33	2.72	10.89	5.44	5.44	0.00	9.52	8.16	2.72	0.04	0.03	0.01	-1.58	-0.26	Overlap[535]
YBR293W	VBA2	Permease of basic amino acids in the vacuolar membrane	Verified	chr2:787001-788425	787001-788425	99.1%	88.52	89.93	66.56	62.32	57.36	48.86	89.22	64.44	53.11	0.33	0.26	0.22	-0.28	-0.05	Matched[536]
YBR294W	SUL1	"High affinity sulfate permease; sulfate uptake is mediated by specific sulfate transporters Sul1p and Sul2p, which control the concentration of endogenous activated sulfate intermediates"	Verified	chr2:789230-791809	789230-791809	98.9%	44.70	44.70	36.86	29.41	37.64	29.80	44.70	33.13	33.72	0.17	0.13	0.14	0.03	1.40	Matched[537]
YBR295W	PCA1	Cadmium transporting P-type ATPase; may also have a role in copper and iron homeostasis; S288C and most other lab strains contain a G970R mutation which eliminates normal cadmium transport function	Verified	chr2:792843-796493	792843-796493	98.7%	44.11	51.05	30.52	35.79	24.97	33.57	47.58	33.15	29.27	0.18	0.13	0.12	-0.18	-0.15	Frag<80[538]
YBR296C	PHO89	"Na+/Pi cotransporter, active in early growth phase; similar to phosphate transporters of Neurospora crassa; transcription regulated by inorganic phosphate concentrations and Pho4p"	Verified	chr2:796792-798516	796792-798516	98.9%	129.60	31.67	208.76	81.51	22.28	7.62	80.63	145.14	14.95	0.30	0.59	0.06	-3.28	-2.85	Matched[539]
YBR296C-A		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr2:800117-800236	800117-800236	98.5%	8.46	0.00	16.91	0.00	0.00	0.00	4.23	8.46	0.00	0.02	0.03	0.00	-Inf	NaN	
YBR297W	MAL33	"MAL-activator protein, part of complex locus MAL3; nonfunctional in genomic reference strain S288C"	Verified	chr2:800517-801923	800517-801923	88.0%	53.31	77.54	95.31	87.23	51.69	21.00	65.42	91.27	36.35	0.24	0.37	0.15	-1.33	-1.21	Matched[540]
YBR298C	MAL31	"Maltose permease, high-affinity maltose transporter (alpha-glucoside transporter); encoded in the MAL3 complex locus; member of the 12 transmembrane domain superfamily of sugar transporters; functional in genomic reference strain S288C"	Verified	chr2:802625-804469	802625-804469	99.0%	61.86	73.91	74.45	64.05	91.43	49.27	67.88	69.25	70.35	0.25	0.28	0.29	0.02	-0.31	Matched[541]
YBR298C-A		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr2:805029-805250	805029-805250	7.0%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	NaN	
YBR299W	MAL32	"Maltase (alpha-D-glucosidase), inducible protein involved in maltose catabolism; encoded in the MAL3 complex locus; functional in genomic reference strain S288C"	Verified	chr2:805345-807099	805345-807099	3.6%	0.00	0.00	15.77	0.00	31.54	0.00	0.00	7.88	15.77	0.00	0.03	0.07	1.00	-0.06	
YBR301W	DAN3	"Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth"	Verified	chr2:809051-809413	809051-809413	3.1%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.70	
YBR300C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YBR301W; YBR300C is not an essential gene"	Dubious	chr2:808594-809091	808594-809091	9.8%	0.00	0.00	0.00	0.00	40.96	0.00	0.00	0.00	20.48	0.00	0.00	0.08	Inf	-0.29	
YBR302C	COS2	"Protein of unknown function, member of the DUP380 subfamily of conserved, often subtelomerically-encoded proteins"	Verified	chr2:810334-811473	810334-811473	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.14	
YCL076W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr3:1392-2135	1392-2135	97.7%	1.38	0.00	0.00	0.00	0.00	0.00	0.69	0.00	0.00	0.00	0.00	0.00	NaN	-0.01	
YCL073C		Protein of unconfirmed function; displays a topology characteristic of the Major Facilitators Superfamily of membrane proteins; coding sequence 98% identical to that of YKR106W	Uncharacterized	chr3:6479-8326	6479-8326	7.4%	0.00	7.30	0.00	7.30	0.00	0.00	3.65	3.65	0.00	0.01	0.01	0.00	-Inf	0.66	
YCL069W	VBA3	Permease of basic amino acids in the vacuolar membrane	Verified	chr3:9706-11082	9706-11082	4.0%	0.00	0.00	0.00	0.00	0.00	36.53	0.00	0.00	18.26	0.00	0.00	0.08	Inf	-0.01	
YCL068C		Putative protein of unknown function	Uncharacterized	chr3:11503-12285	11503-12285	1.8%	0.00	0.00	0.00	0.00	0.00	69.97	0.00	0.00	34.99	0.00	0.00	0.14	Inf	1.20	
YCL067C	HMLALPHA2	Silenced copy of ALPHA2 at HML; homeobox-domain protein that associates with Mcm1p in haploid cells to repress a-specific gene expression and interacts with a1p in diploid cells to repress haploid-specific gene expression	Verified|silenced_gene	chr3:12386-13018	12386-13018	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.19	
YCL066W	HMLALPHA1	"Silenced copy of ALPHA1 at HML, encoding a transcriptional coactivator involved in the regulation of mating-type alpha-specific gene expression"	Verified|silenced_gene	chr3:13282-13809	13282-13809	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.47	
YCL065W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps HMLALPHA1"	Dubious	chr3:13751-14119	13751-14119	35.4%	0.00	7.65	0.00	0.00	0.00	0.00	3.83	0.00	0.00	0.01	0.00	0.00	NaN	0.28	
YCL064C	CHA1	"Catabolic L-serine (L-threonine) deaminase, catalyzes the degradation of both L-serine and L-threonine; required to use serine or threonine as the sole nitrogen source, transcriptionally induced by serine and threonine"	Verified	chr3:15798-16880	15798-16880	99.1%	141.68	76.43	164.98	243.28	4043.50	2679.82	109.06	204.13	3361.66	0.40	0.83	13.93	4.04	3.27	Matched[543]
YCL063W	VAC17	Protein involved in vacuole inheritance; acts as a vacuole-specific receptor for myosin Myo2p	Verified	chr3:17290-18561	17290-18561	98.9%	134.30	123.18	116.82	91.39	116.03	85.03	128.74	104.11	100.53	0.48	0.42	0.42	-0.05	-0.19	Covered/w/another[544]
YCL061C	MRC1	"S-phase checkpoint protein found at replication forks, required for DNA replication; also required for Rad53p activation during DNA replication stress, where it forms a replication-pausing complex with Tof1p and is phosphorylated by Mec1p"	Verified	chr3:18816-22106	18816-22106	99.3%	123.60	104.33	96.99	92.09	44.67	63.33	113.97	94.54	54.00	0.42	0.38	0.22	-0.81	-0.44	Covered/w/another[544]
YCL059C	KRR1	Essential nucleolar protein required for the synthesis of 18S rRNA and for the assembly of 40S ribosomal subunit	Verified	chr3:22429-23379	22429-23379	99.3%	578.08	291.16	434.09	354.69	73.05	54.00	434.62	394.39	63.53	1.60	1.60	0.26	-2.63	-2.24	Covered/w/another[544]
YCL058W-A		Protein of unknown function; identified by homology to Ashbya gossypii	Uncharacterized	chr3:23584-23925	23584-23925	97.7%	173.59	149.64	137.67	101.76	80.81	41.90	161.62	119.72	61.35	0.60	0.49	0.25	-0.96	NaN	Matched[545]
YCL058C	FYV5	"Protein of unknown function, required for survival upon exposure to K1 killer toxin; involved in ion homeostasis"	Dubious	chr3:23523-23981	23523-23981	97.8%	231.60	195.97	180.38	149.21	142.53	69.04	213.79	164.80	105.78	0.79	0.67	0.44	-0.64	-0.02	Matched[545]
YCL057C-A		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr3:24032-24325	24032-24325	98.6%	980.16	938.74	914.58	997.41	1394.31	997.41	959.45	956.00	1195.86	3.54	3.88	4.95	0.32	0.00	Matched[546]
YCL057W	PRD1	"Zinc metalloendopeptidase, found in the cytoplasm and intermembrane space of mitochondria; with Cym1p, involved in degradation of mitochondrial proteins and of presequence peptides cleaved from imported proteins"	Verified	chr3:24768-26906	24768-26906	98.9%	337.54	359.76	311.54	344.63	416.96	375.36	348.65	328.09	396.16	1.29	1.33	1.64	0.27	0.41	Matched[547]
YCL056C		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern	Uncharacterized	chr3:26925-27359	26925-27359	99.5%	224.10	265.69	198.69	205.62	288.79	184.83	244.90	202.16	236.81	0.90	0.82	0.98	0.23	-0.37	Matched[548]
YCL055W	KAR4	"Transcription factor required for gene regulation in repsonse to pheromones; also required during meiosis; exists in two forms, a slower-migrating form more abundant during vegetative growth and a faster-migrating form induced by pheromone"	Verified	chr3:27929-28936	27929-28936	98.8%	151.68	150.68	206.93	193.87	173.78	68.31	151.18	200.40	121.04	0.56	0.81	0.50	-0.73	-0.90	Covered[549]
YCL054W	SPB1	"AdoMet-dependent methyltransferase involved in rRNA processing and 60S ribosomal subunit maturation; methylates G2922 in the tRNA docking site of the large subunit rRNA and in the absence of snR52, U2921; suppressor of PAB1 mutants"	Verified	chr3:31449-33974	31449-33974	98.3%	301.58	147.37	168.71	136.90	17.31	6.04	224.47	152.80	11.68	0.83	0.62	0.05	-3.71	-1.99	Matched[551]
YCL052C	PBN1	"Essential component of glycosylphosphatidylinositol-mannosyltransferase I, required for the autocatalytic post-translational processing of the protease B precursor Prb1p, localizes to ER in lumenal orientation; homolog of mammalian PIG-X"	Verified	chr3:34143-35393	34143-35393	99.1%	178.27	224.25	190.37	225.86	447.69	354.92	201.26	208.11	401.30	0.74	0.84	1.66	0.95	0.75	Matched[552]
YCL051W	LRE1	Protein involved in control of cell wall structure and stress response; inhibits Cbk1p protein kinase activity; overproduction confers resistance to cell-wall degrading enzymes	Verified	chr3:35865-37616	35865-37616	98.6%	125.02	127.33	133.12	129.07	203.73	178.85	126.18	131.10	191.29	0.47	0.53	0.79	0.55	0.90	Matched[553]
YCL050C	APA1	"Diadenosine 5',5''-P1,P4-tetraphosphate phosphorylase I (AP4A phosphorylase), involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; has similarity to Apa2p"	Verified	chr3:37836-38801	37836-38801	98.9%	958.70	1061.27	900.09	877.07	3126.25	2553.75	1009.99	888.58	2840.00	3.73	3.61	11.77	1.68	1.90	Matched[554]
YCL049C		Protein of unknown function; localizes to membrane fraction; YCL049C is not an essential gene;	Uncharacterized	chr3:39786-40724	39786-40724	98.8%	241.42	335.19	225.26	188.61	220.94	120.71	288.31	206.93	170.83	1.06	0.84	0.71	-0.28	-0.92	Matched[556]
YCL048W-A		Putative protein of unknown function	Uncharacterized	chr3:41488-41727	41488-41727	98.9%	25.29	16.86	8.43	16.86	573.13	303.42	21.07	12.64	438.28	0.08	0.05	1.82	5.12	NaN	Matched[557]
YCL048W	SPS22	"Protein of unknown function, redundant with Sps2p for the organization of the beta-glucan layer of the spore wall"	Verified	chr3:42165-43556	42165-43556	98.9%	1.45	6.54	5.81	8.72	3.63	8.72	4.00	7.26	6.17	0.01	0.03	0.03	-0.23	-0.25	Frag<80[557,558]
YCL047C		Putative protein of unknown function	Uncharacterized	chr3:43661-44437	43661-44437	99.0%	107.89	139.08	110.49	123.48	386.05	236.57	123.48	116.98	311.31	0.46	0.47	1.29	1.41	1.26	Matched[559]
YCL046W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YCL045C"	Dubious	chr3:46640-46963	46640-46963	98.4%	185.10	150.59	125.49	156.86	69.02	90.98	167.84	141.18	80.00	0.62	0.57	0.33	-0.82	0.26	Covered/w/another[560]
YCL045C		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the ER; interacts with Gal80p; YCL045C is not an essential gene	Uncharacterized	chr3:44623-46905	44623-46905	99.0%	374.86	366.90	360.26	351.85	216.42	226.60	370.88	356.05	221.51	1.37	1.45	0.92	-0.68	-0.06	Matched[560]
YCL044C	MGR1	"Subunit, with Yme1p, of the mitochondrial inner membrane i-AAA protease complex, which is responsible for degradation of unfolded or misfolded mitochondrial gene products; required for growth of cells lacking the mitochondrial genome"	Verified	chr3:47111-48364	47111-48364	98.2%	104.72	106.35	125.83	111.22	243.54	267.08	105.53	118.52	255.31	0.39	0.48	1.06	1.11	1.47	Matched[561]
YCL043C	PDI1	"Protein disulfide isomerase, multifunctional protein resident in the endoplasmic reticulum lumen, essential for the formation of disulfide bonds in secretory and cell-surface proteins, unscrambles non-native disulfide bonds"	Verified	chr3:48653-50221	48653-50221	98.4%	2466.75	2462.22	2539.26	2278.35	3237.85	2835.79	2464.49	2408.81	3036.82	9.10	9.78	12.58	0.33	0.65	Frag>80[562,563,564]
YCL042W		Putative protein of unknown function; epitope-tagged protein localizes to the cytoplasm	Uncharacterized	chr3:50584-50943	50584-50943	98.6%	349.25	568.95	785.82	949.18	2157.49	2174.39	459.10	867.50	2165.94	1.69	3.52	8.97	1.32	2.62	Frag<80[564]
YCL041C		Hypothetical protein; open reading frame overlaps 5' end of essential PDI1 gene encoding protein disulfide isomerase	Dubious	chr3:50133-50627	50133-50627	96.1%	384.82	428.98	454.22	386.93	593.01	630.86	406.90	420.57	611.93	1.50	1.71	2.54	0.54	2.47	Frag<80[564]
YCL040W	GLK1	"Glucokinase, catalyzes the phosphorylation of glucose at C6 in the first irreversible step of glucose metabolism; one of three glucose phosphorylating enzymes; expression regulated by non-fermentable carbon sources"	Verified	chr3:50838-52340	50838-52340	98.5%	1417.05	2838.83	3288.88	3589.59	9691.63	7840.75	2127.94	3439.24	8766.19	7.86	13.96	36.32	1.35	1.07	Matched[565]
YCL039W	GID7	"Protein of unknown function, involved in proteasome-dependent catabolite inactivation of fructose-1,6-bisphosphatase; contains six WD40 repeats; computational analysis suggests that Gid7p and Moh1p have similar functions"	Verified	chr3:52645-54882	52645-54882	98.8%	101.74	146.51	121.18	127.52	163.69	116.21	124.12	124.35	139.95	0.46	0.50	0.58	0.17	0.07	Covered/w/another[566]
YCL038C	ATG22	"Protein required for the breakdown of autophagic vesicles in the vacuole during autophagy, putative integral membrane protein that localizes to vacuolar membranes and punctate structures attached to the vacuole"	Verified	chr3:54941-56527	54941-56527	98.9%	156.06	385.38	135.04	136.32	137.59	114.02	270.72	135.68	125.81	1.00	0.55	0.52	-0.11	-0.27	Covered/w/another[566]
YCL037C	SRO9	"Cytoplasmic RNA-binding protein that associates with translating ribosomes; involved in heme regulation of Hap1p as a component of the HMC complex, also involved in the organization of actin filaments; contains a La motif"	Verified	chr3:57374-58678	57374-58678	98.6%	640.48	515.34	458.59	387.86	52.85	45.08	577.91	423.23	48.97	2.13	1.72	0.20	-3.11	-2.49	Covered/w/another[566]
YCL036W	GFD2	"Protein of unknown function, identified as a high-copy suppressor of a dbp5 mutation"	Verified	chr3:59026-60726	59026-60726	98.1%	46.13	44.93	23.96	19.77	9.58	12.58	45.53	21.87	11.08	0.17	0.09	0.05	-0.98	-0.60	Frag<80[567,568]
YCL035C	GRX1	Hydroperoxide and superoxide-radical responsive heat-stable glutathione-dependent disulfide oxidoreductase with active site cysteine pair; protects cells from oxidative damage	Verified	chr3:60841-61173	60841-61173	99.1%	1260.61	1793.94	1169.70	1445.45	7527.27	5457.58	1527.27	1307.58	6492.42	5.64	5.31	26.90	2.31	1.42	Matched[568]
YCL034W	LSB5	"Protein of unknown function; binds Las17p, which is a homolog of human Wiskott-Aldrich Syndrome protein involved in actin patch assembly and actin polymerization"	Verified	chr3:61658-62722	61658-62722	98.2%	250.52	253.39	360.48	284.94	547.89	350.92	251.95	322.71	449.40	0.93	1.31	1.86	0.48	0.36	Matched[569]
YCL033C		Putative protein-methionine-R-oxide reductase; involved in response to oxidative stress; similar to mouse Sepx1p and fly SelRp; YCL033C is not an essential gene	Uncharacterized	chr3:62776-63282	62776-63282	99.0%	157.40	201.23	201.23	183.30	402.46	280.92	179.31	192.26	341.69	0.66	0.78	1.42	0.83	0.46	Matched[570]
YCL032W	STE50	"Protein involved in mating response, invasive/filamentous growth, and osmotolerance, acts as an adaptor that links G protein-associated Cdc42p-Ste20p complex to the effector Ste11p to modulate signal transduction"	Verified	chr3:63441-64481	63441-64481	98.5%	114.14	128.78	106.34	120.97	127.80	80.97	121.46	113.65	104.39	0.45	0.46	0.43	-0.12	0.28	Matched[571]
YCL031C	RRP7	Essential protein involved in rRNA processing and ribosome biogenesis	Verified	chr3:64675-65568	64675-65568	99.3%	474.21	344.68	396.49	332.29	307.50	200.50	409.44	364.39	254.00	1.51	1.48	1.05	-0.52	-0.53	Matched[572]
YCL030C	HIS4	"Multifunctional enzyme containing phosphoribosyl-ATP pyrophosphatase, phosphoribosyl-AMP cyclohydrolase, and histidinol dehydrogenase activities; catalyzes the second, third, ninth and tenth steps in histidine biosynthesis"	Verified	chr3:65934-68333	65934-68333	98.9%	938.39	2060.82	951.02	1043.26	357.16	426.65	1499.61	997.14	391.91	5.54	4.05	1.62	-1.35	-0.65	Frag>80[573,574]
YCL029C	BIK1	"Microtubule-associated protein, component of the interface between microtubules and kinetochore, involved in sister chromatid separation; essential in polyploid cells but not in haploid or diploid cells; ortholog of mammalian CLIP-170"	Verified	chr3:68599-69921	68599-69921	99.2%	107.46	76.21	77.74	83.07	56.40	47.25	91.84	80.40	51.82	0.34	0.33	0.21	-0.63	-0.16	Matched[575]
YCL028W	RNQ1	"[PIN(+)] prion, an infectious protein conformation that is generally an ordered protein aggregate"	Verified	chr3:70150-71367	70150-71367	98.4%	456.50	479.03	448.15	421.45	344.67	341.33	467.77	434.80	343.00	1.73	1.76	1.42	-0.34	0.23	Matched[576]
YCL027W	FUS1	"Membrane protein localized to the shmoo tip, required for cell fusion; expression regulated by mating pheromone; proposed to coordinate signaling, fusion, and polarization events required for fusion; potential Cdc28p substrate"	Verified	chr3:71803-73341	71803-73341	98.8%	80.90	149.30	125.62	103.26	61.17	16.44	115.10	114.44	38.81	0.42	0.46	0.16	-1.56	-1.16	Matched[577]
YCL026C-B	HBN1	Putative protein of unknown function; similar to bacterial nitroreductases; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus	Uncharacterized	chr3:73405-73986	73405-73986	98.4%	38.42	34.93	54.14	43.66	167.66	117.01	36.68	48.90	142.34	0.14	0.20	0.59	1.54	NaN	Matched[578]
YCL026C-A	FRM2	"Protein of unknown function, involved in the integration of lipid signaling pathways with cellular homeostasis; similar to bacterial nitroreductases"	Verified	chr3:74704-75285	74704-75285	98.6%	12.20	5.23	12.20	8.71	10.45	1.74	8.71	10.45	6.10	0.03	0.04	0.03	-0.78	-1.26	
YCL025C	AGP1	"Low-affinity amino acid permease with broad substrate range, involved in uptake of asparagine, glutamine, and other amino acids; expression is regulated by the SPS plasma membrane amino acid sensor system (Ssy1p-Ptr3p-Ssy5p)"	Verified	chr3:76018-77919	76018-77919	97.4%	599.88	876.33	512.95	443.29	176.56	184.66	738.10	478.12	180.61	2.72	1.94	0.75	-1.40	-0.83	Frag>80[579,580]
YCL024W	KCC4	"Protein kinase of the bud neck involved in the septin checkpoint, associates with septin proteins, negatively regulates Swe1p by phosphorylation, shows structural homology to bud neck kinases Gin4p and Hsl1p"	Verified	chr3:79162-82275	79162-82275	98.6%	130.32	111.75	99.37	76.89	30.95	33.56	121.03	88.13	32.25	0.45	0.36	0.13	-1.45	-1.04	Matched[581]
YCL023C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified ORF KCC4"	Dubious	chr3:78949-79296	78949-79296	98.4%	35.05	20.44	43.81	17.52	2.92	8.76	27.74	30.66	5.84	0.10	0.12	0.02	-2.39	-0.25	Overlap[581]
YCL022C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps verified gene KCC4/YCL024W"	Dubious	chr3:81570-82085	81570-82085	98.2%	175.60	155.87	146.00	92.73	69.06	39.46	165.73	119.37	54.26	0.61	0.48	0.22	-1.14	-0.37	Covered/w/another[581]
YCL021W-A		Putative protein of unknown function	Uncharacterized	chr3:83620-83997	83620-83997	99.1%	261.62	285.65	216.24	152.17	152.17	120.13	273.64	184.20	136.15	1.01	0.75	0.56	-0.44	0.24	Matched[582]
YCL018W	LEU2	"Beta-isopropylmalate dehydrogenase (IMDH), catalyzes the third step in the leucine biosynthesis pathway"	Verified	chr3:91324-92418	91324-92418	98.8%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.17	
YCL017C	NFS1	Cysteine desulfurase involved in iron-sulfur cluster (Fe/S) biogenesis; required for the post-transcriptional thio-modification of mitochondrial and cytoplasmic tRNAs; essential protein located predominantly in mitochondria	Verified	chr3:92777-94270	92777-94270	98.9%	295.85	234.92	293.15	306.69	241.02	264.71	265.39	299.92	252.86	0.98	1.22	1.05	-0.25	0.38	Frag>80[584,585]
YCL016C	DCC1	"Subunit of a complex with Ctf8p and Ctf18p that shares some components with Replication Factor C, required for sister chromatid cohesion and telomere length maintenance"	Verified	chr3:94621-95763	94621-95763	99.1%	63.59	54.76	51.23	46.81	49.46	28.26	59.18	49.02	38.86	0.22	0.20	0.16	-0.33	0.27	Matched[586]
YCL014W	BUD3	Protein involved in bud-site selection and required for axial budding pattern; localizes with septins to bud neck in mitosis and may constitute an axial landmark for next round of budding	Verified	chr3:96281-101191	96281-101191	98.7%	84.15	61.46	61.46	62.08	41.46	56.31	72.81	61.77	48.88	0.27	0.25	0.20	-0.34	0.12	Matched[587]
YCL012C		"Putative protein of unknown function; orthologs are present in S. bayanus, S. paradoxus and Ashbya gossypii; YCL012C is not an essential gene"	Verified	chr3:101317-101788	101317-101633,101701-101788	99.2%	144.38	149.36	144.38	126.96	214.09	166.79	146.87	135.67	190.44	0.54	0.55	0.79	0.49	NaN	Covered/w/another[587]
YCL011C	GBP2	"Poly(A+) RNA-binding protein, involved in the export of mRNAs from the nucleus to the cytoplasm; similar to Hrb1p and Npl3p; also binds single-stranded telomeric repeat sequence in vitro"	Verified	chr3:102075-103358	102075-103358	99.2%	675.85	636.60	587.93	536.91	531.41	371.28	656.22	562.42	451.35	2.42	2.28	1.87	-0.32	-0.08	Frag<80[588]
YCL010C	SGF29	SaGa associated Factor 29kDa; Probable 29kKDa Subunit of SAGA histone acetyltransferase complex	Verified	chr3:103571-104350	103571-104350	98.8%	149.25	181.69	146.65	103.82	232.30	166.12	165.47	125.24	199.21	0.61	0.51	0.83	0.67	0.88	Covered[589]
YCL009C	ILV6	"Regulatory subunit of acetolactate synthase, which catalyzes the first step of branched-chain amino acid biosynthesis; enhances activity of the Ilv2p catalytic subunit, localizes to mitochondria"	Verified	chr3:104619-105548	104619-105548	98.4%	1002.14	1572.61	1030.55	1016.35	707.07	825.10	1287.37	1023.45	766.09	4.75	4.15	3.17	-0.42	0.09	Matched[590]
YCL008C	STP22	"Component of the ESCRT-I complex, which is involved in ubiquitin-dependent sorting of proteins into the endosome; homologous to the mouse and human Tsg101 tumor susceptibility gene; mutants exhibit a Class E Vps phenotype"	Verified	chr3:105696-106853	105696-106853	98.4%	144.74	175.44	134.22	95.62	193.87	191.24	160.09	114.92	192.55	0.59	0.47	0.80	0.74	1.19	Matched[591]
YCL005W-A	VMA9	Vacuolar H+ ATPase subunit e of the V-ATPase V0 subcomplex; essential for vacuolar acidification; interacts with the V-ATPase assembly factor Vma21p in the ER; involved in V0 biogenesis	Verified	chr3:107023-107417	107023-107033,107111-107191,107288-107417	98.9%	1265.55	1547.80	983.31	974.20	1065.25	646.43	1406.68	978.76	855.84	5.19	3.97	3.55	-0.19	NaN	Matched[592]
YCL007C		"Dubious ORF unlikely to encode a protein; overlaps verified ORF YCL005W-A; mutations in YCL007C were thought to confer sensitivity to calcofluor white, but this phenotype was later shown to be due to the defect in YCL005W-A"	Dubious	chr3:106974-107366	106974-107366	99.1%	472.35	587.87	387.64	379.93	446.68	269.55	530.11	383.78	358.11	1.96	1.56	1.48	-0.10	-0.10	Frag<80[592]
YCL005W	LDB16	Protein of unknown function; null mutants have decreased net negative cell surface charge; GFP-fusion protein expression is induced in response to the DNA-damaging agent MMS; native protein is detected in purified mitochondria	Verified	chr3:108021-108791	108021-108791	99.0%	168.94	213.47	172.87	136.20	137.51	127.03	191.20	154.53	132.27	0.71	0.63	0.55	-0.22	-0.20	Covered/w/another[593]
YCL004W	PGS1	"Phosphatidylglycerolphosphate synthase, catalyzes the synthesis of phosphatidylglycerolphosphate from CDP-diacylglycerol and sn-glycerol 3-phosphate in the first committed and rate-limiting step of cardiolipin biosynthesis"	Verified	chr3:109105-110670	109105-110670	99.0%	94.22	113.58	78.73	89.70	105.19	87.12	103.90	84.21	96.15	0.38	0.34	0.40	0.19	0.18	Covered/w/another[593]
YCL002C		Putative protein of unknown function; YCL002C is not an essential gene	Uncharacterized	chr3:110843-111674	110843-111556,111633-111674	99.0%	183.07	145.66	152.34	163.03	130.96	70.82	164.37	157.68	100.89	0.61	0.64	0.42	-0.64	-1.11	Covered/w/another[593]
YCL001W	RER1	"Protein involved in retention of membrane proteins, including Sec12p, in the ER; localized to Golgi; functions as a retrieval receptor in returning membrane proteins to the ER"	Verified	chr3:111914-112480	111914-112480	99.1%	582.15	532.30	612.42	505.60	639.12	284.85	557.23	559.01	461.98	2.06	2.27	1.91	-0.28	-0.67	Matched[594]
YCL001W-A		Putative protein of unknown function; YCL001W-A is not an essential gene	Uncharacterized	chr3:113078-113539	113078-113539	98.9%	17.51	26.27	13.14	8.76	24.08	17.51	21.89	10.95	20.80	0.08	0.04	0.09	0.93	0.41	Matched[595]
YCL001W-B		Putative protein of unknown function; identified by homology	Uncharacterized	chr3:113768-114022	113768-114022	98.2%	35.93	51.90	55.89	35.93	75.85	87.82	43.91	45.91	81.84	0.16	0.19	0.34	0.83	0.83	Covered/w/another[595]
YCR001W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; YCR001W is not an essential gene"	Dubious	chr3:115683-115997	115683-115997	99.5%	28.71	22.33	28.71	22.33	28.71	15.95	25.52	25.52	22.33	0.09	0.10	0.09	-0.19	0.07	Covered[596]
YCR002C	CDC10	"Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recruit proteins to the neck and can act as a barrier to diffusion at the membrane, and they comprise the 10nm filaments seen with EM"	Verified	chr3:117378-118346	117378-118346	99.2%	430.86	365.29	351.76	395.47	345.52	276.83	398.07	373.62	311.17	1.47	1.52	1.29	-0.26	-0.06	Matched[597]
YCR003W	MRPL32	Mitochondrial ribosomal protein of the large subunit	Verified	chr3:118618-119169	118618-119169	98.7%	286.33	278.98	273.48	266.14	352.40	189.05	282.66	269.81	270.72	1.04	1.10	1.12	0.00	-0.80	Frag>80[598,599]
YCR004C	YCP4	"Protein of unknown function, has sequence and structural similarity to flavodoxins; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr3:119573-120316	119573-120316	98.8%	1200.48	1508.08	1510.80	1433.22	3284.30	2414.56	1354.28	1472.01	2849.43	5.00	5.98	11.81	0.95	0.64	Matched[600]
YCR005C	CIT2	"Citrate synthase, catalyzes the condensation of acetyl coenzyme A and oxaloacetate to form citrate, peroxisomal isozyme involved in glyoxylate cycle; expression is controlled by Rtg1p and Rtg2p transcription factors"	Verified	chr3:120944-122326	120944-122326	99.1%	408.57	774.83	436.30	271.41	723.03	390.33	591.70	353.85	556.68	2.18	1.44	2.31	0.65	0.86	Matched[602]
YCR006C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr3:122528-123001	122528-123001	98.6%	14.98	27.82	36.38	21.40	32.10	23.54	21.40	28.89	27.82	0.08	0.12	0.12	-0.05	0.71	Matched[603]
YCR007C		"Putative integral membrane protein, member of DUP240 gene family; YCR007C is not an essential gene"	Uncharacterized	chr3:126009-126728	126009-126728	99.1%	46.23	51.84	50.43	23.82	91.06	100.87	49.03	37.13	95.97	0.18	0.15	0.40	1.37	1.27	Covered[605]
YCR008W	SAT4	Ser/Thr protein kinase involved in salt tolerance; funtions in regulation of Trk1p-Trk2p potassium transporter; partially redundant with Hal5p; has similarity to Npr1p	Verified	chr3:128468-130279	128468-130279	98.8%	315.72	282.20	307.90	268.78	455.98	405.69	298.96	288.34	430.84	1.10	1.17	1.79	0.58	0.60	Matched[606]
YCR009C	RVS161	"Amphiphysin-like lipid raft protein; subunit of a complex (Rvs161p-Rvs167p) that regulates polarization of the actin cytoskeleton, endocytosis, cell polarity, cell fusion and viability following starvation or osmotic stress"	Verified	chr3:130743-131540	130743-131540	99.5%	656.24	823.76	701.58	791.01	1250.76	904.38	740.00	746.30	1077.57	2.73	3.03	4.46	0.53	0.26	Matched[607]
YCR010C	ADY2	Acetate transporter required for normal sporulation; phosphorylated in mitochondria	Verified	chr3:132271-133122	132271-133122	99.0%	2.37	17.79	8.30	3.56	40.33	17.79	10.08	5.93	29.06	0.04	0.02	0.12	2.29	1.31	Frag<80[608,609]
YCR011C	ADP1	Putative ATP-dependent permease of the ABC transporter family of proteins	Verified	chr3:133722-136871	133722-136871	99.2%	287.83	338.42	329.14	307.36	516.76	477.05	313.13	318.25	496.90	1.16	1.29	2.06	0.64	1.23	Matched[610]
YCR012W	PGK1	"3-phosphoglycerate kinase, catalyzes transfer of high-energy phosphoryl groups from the acyl phosphate of 1,3-bisphosphoglycerate to ADP to produce ATP; key enzyme in glycolysis and gluconeogenesis"	Verified	chr3:137744-138994	137744-138994	98.5%	26237.50	28129.40	25080.62	23338.81	39325.83	26912.48	27183.45	24209.71	33119.16	100.35	98.27	137.22	0.45	-0.74	Frag>80[611,612]
YCR013C		"ubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; transcription of both YCR013C and the overlapping essential gene PGK1 is reduced in the gcr1 null mutant"	Dubious	chr3:138400-139047	138400-139047	98.6%	31481.31	33417.78	29745.22	26988.46	49781.49	30664.14	32449.55	28366.84	40222.82	119.79	115.15	166.66	0.50	-0.08	Matched[612]
YCR014C	POL4	"DNA polymerase IV, undergoes pair-wise interactions with Dnl4p-Lif1p and Rad27p to mediate repair of DNA double-strand breaks by non-homologous end joining (NHEJ); homologous to mammalian DNA polymerase beta"	Verified	chr3:139183-140931	139183-140931	99.5%	103.48	117.28	70.71	59.79	33.34	29.90	110.38	65.25	31.62	0.41	0.26	0.13	-1.05	-0.91	Covered/w/another[613]
YCR015C		Putative protein of unknown function; YCR015C is not an essential gene	Uncharacterized	chr3:141215-142168	141215-142168	99.3%	79.13	82.30	85.46	88.63	54.86	53.81	80.71	87.04	54.34	0.30	0.35	0.23	-0.68	-0.01	Covered/w/another[613]
YCR016W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus and nucleus; YCR016W is not an essential gene	Uncharacterized	chr3:143632-144504	143632-144504	98.2%	314.99	168.00	169.16	163.33	31.50	18.67	241.49	166.25	25.08	0.89	0.67	0.10	-2.73	-2.64	Matched[615]
YCR017C	CWH43	Putative sensor/transporter protein involved in cell wall biogenesis; contains 14-16 transmembrane segments and several putative glycosylation and phosphorylation sites; null mutation is synthetically lethal with pkc1 deletion	Verified	chr3:144771-147632	144771-147632	98.8%	371.56	420.71	360.96	359.19	155.55	153.79	396.13	360.07	154.67	1.46	1.46	0.64	-1.22	-0.52	Matched[616]
YCR018C	SRD1	Protein involved in the processing of pre-rRNA to mature rRNA; contains a C2/C2 zinc finger motif; srd1 mutation suppresses defects caused by the rrp1-1 mutation	Verified	chr3:148236-148901	148236-148901	99.3%	185.96	312.96	172.36	158.75	359.83	173.87	249.46	165.55	266.85	0.92	0.67	1.11	0.69	0.44	Frag<80[617,618]
YCR018C-A		Putative protein of unknown function; encoded opposite a Ty1 LTR	Dubious	chr3:151606-151860	151606-151860	26.9%	43.69	14.56	14.56	43.69	87.38	87.38	29.13	29.13	87.38	0.11	0.12	0.36	1.58	0.87	Frag<80[619]
YCR019W	MAK32	Protein necessary for structural stability of L-A double-stranded RNA-containing particles	Verified	chr3:152835-153926	152835-153926	98.7%	65.90	71.47	70.54	56.62	82.61	77.97	68.69	63.58	80.29	0.25	0.26	0.33	0.34	0.60	Matched[620]
YCR020C	PET18	Protein required for respiratory growth and stability of the mitochondrial genome	Verified	chr3:154010-154657	154010-154657	99.2%	40.46	45.13	28.01	21.79	24.90	18.67	42.79	24.90	21.79	0.16	0.10	0.09	-0.19	0.19	Matched[621]
YCR020C-A	MAK31	Non-catalytic subunit of N-terminal acetyltransferase of the NatC type; required for replication of dsRNA virus; member of the Sm protein family	Verified	chr3:154828-155094	154828-155094	99.1%	287.29	257.05	215.47	253.27	154.99	117.18	272.17	234.37	136.08	1.00	0.95	0.56	-0.78	-0.97	Matched[622]
YCR020W-B	HTL1	"Component of the RSC chromatin remodeling complex; RSC functions in transcriptional regulation and elongation, chromosome stability, and establishing sister chromatid cohesion; involved in telomere maintenance"	Verified	chr3:155318-155554	155318-155554	98.5%	180.00	137.14	192.86	68.57	111.43	34.29	158.57	130.71	72.86	0.59	0.53	0.30	-0.84	-0.61	Matched[623]
YCR021C	HSP30	"Hydrophobic plasma membrane localized, stress-responsive protein that negatively regulates the H(+)-ATPase Pma1p; induced by heat shock, ethanol treatment, weak organic acid, glucose limitation, and entry into stationary phase"	Verified	chr3:156105-157103	156105-157103	98.9%	56.71	82.02	47.59	43.54	7786.00	5730.39	69.36	45.57	6758.20	0.26	0.18	28.00	7.21	4.68	Frag>80[624,625]
YCR022C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; YCR022C is not an essential gene"	Dubious	chr3:157417-157761	157417-157761	98.2%	5.90	11.80	14.75	5.90	2.95	2.95	8.85	10.33	2.95	0.03	0.04	0.01	-1.81	-1.17	Frag<80[626]
YCR023C		Putative protein of unknown function; YCR023C is not an essential gene	Uncharacterized	chr3:158534-160369	158534-160369	99.0%	184.23	257.93	145.19	154.54	171.59	142.99	221.08	149.86	157.29	0.82	0.61	0.65	0.07	-0.12	Matched[627]
YCR024C	SLM5	Mitochondrial asparaginyl-tRNA synthetase	Verified	chr3:160740-162218	160740-162218	99.1%	58.01	70.98	70.98	80.54	81.22	73.71	64.50	75.76	77.47	0.24	0.31	0.32	0.03	0.14	Matched[628]
YCR024C-B		Putative protein of unknown function; identified by expression profiling and mass spectrometry	Uncharacterized	chr3:162595-162861	162595-162861	98.8%	8441.14	7167.01	6465.48	5525.04	3382.52	2093.22	7804.08	5995.26	2737.87	28.81	24.34	11.34	-1.13	NaN	Matched[629]
YCR024C-A	PMP1	"Small single-membrane span proteolipid that functions as a regulatory subunit of the plasma membrane H(+)-ATPase Pma1p, forms unique helix and positively charged cytoplasmic domain that is able to specifically segregate phosphatidylserines"	Verified	chr3:162941-163063	162941-163063	83.3%	7059.40	6366.15	5819.37	4979.66	3290.48	2060.21	6712.77	5399.51	2675.35	24.78	21.92	11.08	-1.01	-0.73	Matched[629]
YCR025C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; YCR025C is not an essential gene"	Dubious	chr3:163442-163852	163442-163852	98.7%	12.33	19.73	22.20	12.33	41.93	39.46	16.03	17.26	40.69	0.06	0.07	0.17	1.24	0.87	Matched[630]
YCR026C	NPP1	Nucleotide pyrophosphatase/phosphodiesterase family member; mediates extracellular nucleotide phosphate hydrolysis along with Npp2p and Pho5p; activity and expression enhanced during conditions of phosphate starvation	Verified	chr3:164107-166335	164107-166335	99.2%	128.46	137.51	105.39	108.11	89.11	108.56	132.98	106.75	98.83	0.49	0.43	0.41	-0.11	0.56	Matched[631]
YCR027C	RHB1	Putative Rheb-related GTPase involved in regulating canavanine resistance and arginine uptake; member of the Ras superfamily of G-proteins	Verified	chr3:167366-167995	167366-167995	99.1%	124.89	86.46	120.09	121.69	96.07	91.27	105.68	120.89	93.67	0.39	0.49	0.39	-0.37	-0.08	Matched[633]
YCR028C	FEN2	Plasma membrane H+-pantothenate symporter; confers sensitivity to the antifungal agent fenpropimorph	Verified	chr3:170882-172420	170882-172420	99.1%	111.46	106.22	100.32	84.58	32.78	34.09	108.84	92.45	33.44	0.40	0.38	0.14	-1.47	-0.83	Covered[636]
YCR028C-A	RIM1	Single-stranded DNA-binding protein essential for mitochondrial genome maintenance; involved in mitochondrial DNA replication	Verified	chr3:172946-173436	172946-173111,173195-173436	98.9%	1238.90	971.30	1105.10	1062.98	971.30	552.55	1105.10	1084.04	761.92	4.08	4.40	3.16	-0.51	-0.74	Matched[637]
YCR030C	SYP1	Protein with a potential role in actin cytoskeletal organization; overexpression suppresses a pfy1 (profilin) null mutation	Verified	chr3:173822-176434	173822-176434	98.7%	157.73	190.67	207.34	196.10	244.93	308.10	174.20	201.72	276.51	0.64	0.82	1.15	0.46	1.19	Matched[638]
YCR031C	RPS14A	"Ribosomal protein 59 of the small subunit, required for ribosome assembly and 20S pre-rRNA processing; mutations confer cryptopleurine resistance; nearly identical to Rps14Bp and similar to E. coli S11 and rat S14 ribosomal proteins"	Verified	chr3:177496-178216	177496-177902,178210-178216	64.7%	10486.71	9180.53	9535.07	8019.90	3713.26	2791.48	9833.62	8777.48	3252.37	36.30	35.63	13.48	-1.43	-1.63	Frag>80[639,640,641]
YCR032W	BPH1	"PProtein homologous to human Chediak-Higashi syndrome and murine Beige proteins, which are implicated in disease syndromes due to defective lysosomal trafficking; mutant phenotype and genetic interactions suggest a role in protein sorting"	Verified	chr3:179516-186019	179516-186019	99.0%	36.67	45.84	34.50	32.63	31.08	36.98	41.25	33.56	34.03	0.15	0.14	0.14	0.02	0.10	Frag>80[642,643]
YCR033W	SNT1	"Subunit of the Set3C deacetylase complex that interacts directly with the Set3C subunit, Sif2p; putative DNA-binding protein"	Verified	chr3:186485-190165	186485-190165	98.6%	203.91	184.62	167.26	158.99	114.91	164.50	194.26	163.13	139.70	0.72	0.66	0.58	-0.22	0.64	Matched[644]
YCR034W	FEN1	"Fatty acid elongase, involved in sphingolipid biosynthesis; acts on fatty acids of up to 24 carbons in length; mutations have regulatory effects on 1,3-beta-glucan synthase, vacuolar ATPase, and the secretory pathway"	Verified	chr3:190588-191631	190588-191631	99.2%	842.04	739.68	781.20	722.30	174.78	132.29	790.86	751.75	153.54	2.92	3.05	0.64	-2.29	-1.86	Matched[645]
YCR035C	RRP43	"Protein involved in rRNA processing; component of the exosome 3->5 exonuclease complex with Rrp41p, Rrp42p, Rrp4p and Dis3p; required for efficient maturation of 5.8S, 18S and 25S rRNA"	Verified	chr3:191830-193014	191830-193014	99.2%	223.69	188.82	215.18	179.46	155.65	103.76	206.25	197.32	129.70	0.76	0.80	0.54	-0.61	-0.71	Matched[646]
YCR036W	RBK1	Putative ribokinase	Verified	chr3:193293-194294	193293-194294	98.6%	228.71	223.65	242.87	240.85	498.90	376.45	226.18	241.86	437.68	0.83	0.98	1.81	0.86	0.74	Matched[647]
YCR037C	PHO87	"Low-affinity inorganic phosphate (Pi) transporter, involved in activation of PHO pathway; expression is independent of Pi concentration and Pho4p activity; contains 12 membrane-spanning segments"	Verified	chr3:194410-197181	194410-197181	98.8%	109.91	101.51	79.24	64.63	96.03	69.01	105.71	71.93	82.52	0.39	0.29	0.34	0.20	0.66	Matched[648]
YCR038W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified gene BUD5/YCR038C; identified by homology with hemiascomycetous yeast species"	Dubious	chr3:199289-199414	199289-199414	4.4%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	-0.25	
YCR038C	BUD5	GTP/GDP exchange factor for Rsr1p (Bud1p) required for both axial and bipolar budding patterns; mutants exhibit random budding in all cell types	Verified	chr3:197617-199545	197617-199545	54.8%	53.02	55.86	49.23	37.87	72.90	51.12	54.44	43.55	62.01	0.20	0.18	0.26	0.51	1.10	Frag<80[649]
YCR039C	MATALPHA2	"Homeobox-domain protein that, with Mcm1p, represses a-specific genes in haploids; acts with A1p to repress transcription of haploid-specific genes in diploids; one of two genes encoded by the MATalpha mating type cassette"	Verified	chr3:199542-200174	199542-200174	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.19	
YCR040W	MATALPHA1	Transcriptional co-activator involved in regulation of mating-type-specific gene expression; targets the transcription factor Mcm1p to the promoters of alpha-specific genes; one of two genes encoded by the MATalpha mating type cassette	Verified	chr3:200438-200965	200438-200965	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.47	
YCR041W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr3:200907-201239	200907-201239	28.0%	289.54	246.65	203.75	171.58	214.48	117.96	268.10	187.67	166.22	0.99	0.76	0.69	-0.18	0.52	Overlap[650]
YCR042C	TAF2	"TFIID subunit (150 kDa), involved in RNA polymerase II transcription initiation"	Verified	chr3:201170-205393	201170-205393	99.3%	114.92	113.72	93.70	87.50	92.74	90.12	114.32	90.60	91.43	0.42	0.37	0.38	0.01	0.37	Matched[650]
YCR043C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the Golgi apparatus; YCR043C is not an essential gene	Uncharacterized	chr3:206257-206640	206257-206640	99.4%	316.89	316.89	316.89	261.89	191.18	170.23	316.89	289.39	180.71	1.17	1.17	0.75	-0.68	-0.47	Matched[652]
YCR044C	PER1	"Protein of the endoplasmic reticulum, required for GPI-phospholipase A2 activity that remodels the GPI anchor as a prerequisite for association of GPI-anchored proteins with lipid rafts; functionally complemented by human ortholog PERLD1"	Verified	chr3:206873-207946	206873-207946	98.9%	317.43	328.73	290.11	281.63	254.32	184.62	323.08	285.87	219.47	1.19	1.16	0.91	-0.38	-0.47	Matched[653]
YCR045W-A		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps with YCR045C; identified by gene-trapping, microarray expression analysis, and genome-wide homology searching"	Dubious	chr3:208747-209097	208747-209097	99.0%	77.72	100.74	51.81	40.30	86.35	63.32	89.23	46.05	74.84	0.33	0.19	0.31	0.70	NaN	Covered/w/another[654]
YCR045C		Putative protein of unknown function	Uncharacterized	chr3:208131-209606	208131-209606	98.7%	87.86	110.51	69.33	54.23	64.52	67.27	99.19	61.78	65.90	0.37	0.25	0.27	0.09	1.68	Matched[654]
YCR046C	IMG1	"Mitochondrial ribosomal protein of the large subunit, required for respiration and for maintenance of the mitochondrial genome"	Verified	chr3:209910-210419	209910-210419	98.5%	394.23	440.02	495.77	358.39	515.68	310.60	417.12	427.08	413.14	1.54	1.73	1.71	-0.05	0.07	Matched[655]
YCR047W-A		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps with YCR047C; identified by gene-trapping, microarray expression analysis, and genome-wide homology searching"	Dubious	chr3:211297-211503	211297-211503	99.0%	151.28	112.24	126.88	63.44	14.64	9.76	131.76	95.16	12.20	0.49	0.39	0.05	-2.96	NaN	Covered/w/another[656]
YCR047C	BUD23	Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern	Verified	chr3:210714-211541	210714-211541	98.9%	163.56	147.70	108.64	96.43	19.53	20.75	155.63	102.53	20.14	0.57	0.42	0.08	-2.35	-2.24	Matched[656]
YCR048W	ARE1	"Acyl-CoA:sterol acyltransferase, isozyme of Are2p; endoplasmic reticulum enzyme that contributes the major sterol esterification activity in the absence of oxygen"	Verified	chr3:211925-213757	211925-213757	98.4%	135.34	229.64	123.14	97.62	145.88	166.40	182.49	110.38	156.14	0.67	0.45	0.65	0.50	0.77	Matched[657]
YCR049C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr3:211867-212313	211867-212313	97.9%	66.29	157.73	70.86	48.00	73.15	114.30	112.01	59.43	93.72	0.41	0.24	0.39	0.66	0.04	Covered/w/another[657]
YCR050C		Non-essential protein of unknown function; deletion mutant is synthetically sick or lethal with alpha-synuclein	Uncharacterized	chr3:213460-213768	213460-213768	98.9%	193.15	360.11	193.15	157.14	304.46	235.71	276.63	175.15	270.09	1.02	0.71	1.12	0.62	0.13	Covered/w/another[657]
YCR051W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; contains ankyrin (Ank) repeats; YCR051W is not an essential gene	Uncharacterized	chr3:214067-214735	214067-214735	97.6%	330.84	197.59	283.36	240.47	111.81	85.77	264.22	261.92	98.79	0.98	1.06	0.41	-1.41	-1.20	Matched[658]
YCR052W	RSC6	Component of the RSC chromatin remodeling complex; essential for mitotic growth; homolog of SWI/SNF subunit Swp73p	Verified	chr3:214990-216441	214990-216441	98.4%	224.57	270.74	220.37	196.58	139.92	121.73	247.65	208.48	130.82	0.91	0.85	0.54	-0.67	-0.00	Matched[659]
YCR053W	THR4	"Threonine synthase, conserved protein that catalyzes formation of threonine from 0-phosphohomoserine; expression is regulated by the GCN4-mediated general amino acid control pathway"	Verified	chr3:216693-218237	216693-218237	98.9%	1060.46	1058.50	1042.14	997.66	436.35	417.38	1059.48	1019.90	426.87	3.91	4.14	1.77	-1.26	-0.51	Matched[660]
YCR054C	CTR86	Essential protein of unknown function; upstream region contains a Gcn4p responsive site suggesting a possible role in amino acid biosynthesis	Verified	chr3:218372-220063	218372-220063	99.1%	54.26	50.09	39.35	28.62	28.62	22.66	52.17	33.99	25.64	0.19	0.14	0.11	-0.41	-0.08	Matched[661]
YCR057C	PWP2	"Conserved 90S pre-ribosomal component essential for proper endonucleolytic cleavage of the 35 S rRNA precursor at A0, A1, and A2 sites; contains eight WD-repeats; PWP2 deletion leads to defects in cell cycle and bud morphogenesis"	Verified	chr3:220453-223224	220453-223224	99.1%	176.59	117.97	107.78	75.37	8.37	5.46	147.28	91.57	6.92	0.54	0.37	0.03	-3.73	-4.23	Matched[662]
YCR059C	YIH1	"Protein that inhibits activation of Gcn2p, an eIF2 alpha subunit protein kinase, by competing for Gcn1p binding, thus impacting gene expression in response to starvation; has sequence and functional similarity to the mouse IMPACT gene"	Verified	chr3:223450-224226	223450-224226	98.3%	346.99	335.21	306.40	260.57	69.40	73.33	341.10	283.49	71.36	1.26	1.15	0.30	-1.99	-1.26	Matched[663]
YCR060W	TAH1	"HSP90 cofactor; interacts with Hsp82p, Pih1p, Rvb1 and Rvb2, contains a single TPR domain with at least two TPR motifs"	Verified	chr3:224395-224730	224395-224730	98.0%	206.43	291.42	212.50	173.03	145.71	97.14	248.92	192.76	121.43	0.92	0.78	0.50	-0.67	-1.26	Covered/w/another[663]
YCR061W		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern	Uncharacterized	chr3:225559-227454	225559-227454	98.8%	141.99	256.23	165.48	166.55	369.40	409.43	199.11	166.01	389.41	0.74	0.67	1.61	1.23	1.68	Matched[664]
YCR063W	BUD31	Protein involved in bud-site selection; analysis of integrated high-throughput datasets predicts an involvement in RNA splicing; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern	Verified	chr3:228314-228787	228314-228787	98.4%	79.36	49.33	68.64	42.90	17.16	60.06	64.35	55.77	38.61	0.24	0.23	0.16	-0.53	-0.36	Covered/w/another[666]
YCR064C		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data; partially overlaps the verified gene BUD31"	Dubious	chr3:228091-228501	228091-228501	98.6%	44.41	32.08	41.95	29.61	12.34	37.01	38.24	35.78	24.67	0.14	0.15	0.10	-0.54	0.17	Overlap[666]
YCR065W	HCM1	"Forkhead transcription factor that drives S-phase specific expression of genes involved in chromosome segregation, spindle dynamics, and budding; suppressor of calmodulin mutants with specific SPB assembly defects; telomere maintenance role"	Verified	chr3:229306-231000	229306-231000	98.7%	208.06	199.09	166.81	162.62	95.66	88.49	203.58	164.72	92.07	0.75	0.67	0.38	-0.84	-0.21	Covered/w/another[666]
YCR066W	RAD18	Protein involved in postreplication repair; binds single-stranded DNA and has single-stranded DNA dependent ATPase activity; forms heterodimer with Rad6p; contains RING-finger motif	Verified	chr3:231496-232959	231496-232959	98.8%	49.08	43.55	38.02	44.93	49.08	60.14	46.31	41.47	54.61	0.17	0.17	0.23	0.40	0.80	Matched[667]
YCR067C	SED4	"Integral endoplasmic reticulum membrane protein, functions as a positive regulator of Sar1p probably through inhibition of GTPase activation by Sec23p; binds Sec16p, participates in vesicle formation, similar to Sec12p"	Verified	chr3:233121-236318	233121-236318	97.1%	142.01	148.45	146.51	123.33	115.60	144.26	145.23	134.92	129.93	0.54	0.55	0.54	-0.05	0.62	Matched[668]
YCR068W	ATG15	"Lipase, required for intravacuolar lysis of autophagic bodies; located in the endoplasmic reticulum membrane and targeted to intravacuolar vesicles during autophagy via the multivesicular body (MVB) pathway"	Verified	chr3:237210-238772	237210-238772	98.4%	53.34	78.71	59.85	50.09	62.45	93.67	66.03	54.97	78.06	0.24	0.22	0.32	0.51	1.32	Matched[669]
YCR069W	CPR4	"Peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; has a potential role in the secretory pathway"	Verified	chr3:239051-240007	239051-240007	98.9%	462.84	719.62	518.84	539.98	456.50	439.59	591.23	529.41	448.05	2.18	2.15	1.86	-0.24	0.32	Matched[670]
YCR071C	IMG2	Mitochondrial ribosomal protein of the small subunit	Verified	chr3:240099-240539	240099-240539	99.2%	272.05	304.06	301.77	221.76	372.64	198.90	288.05	261.76	285.77	1.06	1.06	1.18	0.13	-0.16	Matched[671]
YCR072C	RSA4	"WD-repeat protein involved in ribosome biogenesis; may interact with ribosomes; required for maturation and efficient intra-nuclear transport or pre-60S ribosomal subunits, localizes to the nucleolus"	Verified	chr3:240801-242348	240801-242348	98.9%	117.55	102.53	84.90	58.77	9.80	4.57	110.04	71.83	7.18	0.41	0.29	0.03	-3.32	-3.61	Covered/w/another[672]
YCR073C	SSK22	"MAP kinase kinase kinase of the HOG1 mitogen-activated signaling pathway; functionally redundant with, and homologous to, Ssk2p; interacts with and is activated by Ssk1p; phosphorylates Pbs2p"	Verified	chr3:242585-246580	242585-246580	99.2%	49.45	60.55	35.83	32.80	11.35	14.63	55.00	34.31	12.99	0.20	0.14	0.05	-1.40	-0.86	Covered/w/another[672]
YCR073W-A	SOL2	"Protein with a possible role in tRNA export; shows similarity to 6-phosphogluconolactonase non-catalytic domains but does not exhibit this enzymatic activity; homologous to Sol1p, Sol3p, and Sol4p"	Verified	chr3:246960-247907	246960-247907	98.3%	148.06	207.07	196.34	181.32	383.03	293.98	177.57	188.83	338.50	0.66	0.77	1.40	0.84	0.69	Matched[673]
YCR075C	ERS1	"Protein with similarity to human cystinosin, which is a H(+)-driven transporter involved in L-cystine export from lysosomes and implicated in the disease cystinosis; contains seven transmembrane domains"	Verified	chr3:248030-248812	248030-248812	99.0%	116.12	163.86	143.22	136.77	174.18	118.70	139.99	139.99	146.44	0.52	0.57	0.61	0.06	0.19	Matched[674]
YCR075W-A		Putative protein of unknown function; identified by homology to Ashbya gossypii	Uncharacterized	chr3:248972-249199	248972-249199	98.8%	235.21	248.52	248.52	204.14	319.53	306.21	241.86	226.33	312.87	0.89	0.92	1.30	0.47	NaN	Covered/w/another[675]
YCR076C		Putative protein of unknown function; YCR076C is not an essential gene	Uncharacterized	chr3:249290-250042	249290-250042	99.0%	144.89	187.82	160.99	119.40	347.48	224.05	166.36	140.20	285.76	0.61	0.57	1.18	1.03	0.78	Matched[675]
YCR077C	PAT1	"Topoisomerase II-associated deadenylation-dependent mRNA-decapping factor; also required for faithful chromosome transmission, maintenance of rDNA locus stability, and protection of mRNA 3'-UTRs from trimming; functionally linked to Pab1p"	Verified	chr3:250235-252625	250235-252625	98.8%	334.03	289.58	326.41	275.61	219.73	236.66	311.81	301.01	228.19	1.15	1.22	0.95	-0.40	0.12	Matched[676]
YCR079W	PTC6	Phosphoprotein phosphatase type 2C similar to mammalian PP1Ks; involved in mitophagy; localized to mitochondrial inner membrane space; null mutant is sensitive to rapamycin	Verified	chr3:252842-254170	252842-254170	98.4%	87.16	100.15	116.97	115.44	196.48	181.19	93.65	116.21	188.84	0.35	0.47	0.78	0.70	1.04	Matched[677]
YCR081W	SRB8	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation; involved in glucose repression	Verified	chr3:254368-258651	254368-258651	99.1%	33.22	32.28	27.33	32.75	22.62	27.33	32.75	30.04	24.98	0.12	0.12	0.10	-0.27	0.42	Matched[678]
YCR081C-A		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps with SRB8/YCR081W; identified by gene-trapping, microarray expression analysis, and genome-wide homology searching"	Dubious	chr3:258412-258648	258412-258648	98.9%	93.88	46.94	76.81	93.88	42.67	51.21	70.41	85.35	46.94	0.26	0.35	0.19	-0.86	NaN	Covered/w/another[678]
YCR082W	AHC2	"Protein of unknown function, putative transcriptional regulator; proposed to be a Ada Histone acetyltransferase complex component; GFP tagged protein is localized to the cytoplasm and nucleus"	Verified	chr3:258880-259266	258880-259266	98.7%	429.18	361.14	491.99	476.28	1350.34	803.40	395.16	484.13	1076.87	1.46	1.97	4.46	1.15	0.55	Matched[679]
YCR083W	TRX3	"Mitochondrial thioredoxin, highly conserved oxidoreductase required to maintain the redox homeostasis of the cell, forms the mitochondrial thioredoxin system with Trr2p, redox state is maintained by both Trr2p and Glr1p"	Verified	chr3:259575-259958	259575-259958	98.7%	190.06	240.21	248.13	245.49	834.14	432.91	215.13	246.81	633.52	0.79	1.00	2.62	1.36	0.72	Covered/w/another[680]
YCR084C	TUP1	"General repressor of transcription, forms complex with Cyc8p, involved in the establishment of repressive chromatin structure through interactions with histones H3 and H4, appears to enhance expression of some genes"	Verified	chr3:260308-262449	260308-262449	98.6%	558.40	527.62	538.04	519.09	356.64	404.48	543.01	528.57	380.56	2.00	2.15	1.58	-0.47	0.10	Matched[680]
YCR085W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr3:262913-263266	262913-263266	99.2%	14.23	8.54	14.23	2.85	14.23	5.69	11.39	8.54	9.96	0.04	0.03	0.04	0.22	-0.43	Overlap[681]
YCR086W	CSM1	"Nucleolar protein that forms a complex with Lrs4p which binds Mam1p at kinetochores during meiosis I to mediate accurate chromosome segregation, may be involved in premeiotic DNA replication; possible role in telomere maintenance"	Verified	chr3:263389-263961	263389-263961	98.5%	102.75	88.58	118.70	108.07	86.81	65.55	95.67	113.38	76.18	0.35	0.46	0.32	-0.57	-0.56	Matched[681]
YCR087W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized gene YCR087C-A; YCR087W is not an essential gene"	Dubious	chr3:263973-264488	263973-264488	97.4%	328.30	189.02	240.76	206.93	53.72	9.95	258.66	223.84	31.84	0.95	0.91	0.13	-2.81	-0.31	Matched[681]
YCR087C-A		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus; YCR087C-A is not an essential gene	Uncharacterized	chr3:264003-264464	264003-264464	97.1%	336.52	193.89	236.23	222.86	51.26	11.14	265.21	229.55	31.20	0.98	0.93	0.13	-2.88	-1.84	Matched[681]
YCR088W	ABP1	"Actin-binding protein of the cortical actin cytoskeleton, important for activation of the Arp2/3 complex that plays a key role actin in cytoskeleton organization"	Verified	chr3:265065-266843	265065-266843	98.3%	567.05	703.66	661.93	652.79	585.34	748.82	635.35	657.36	667.08	2.35	2.67	2.76	0.02	0.76	Matched[683]
YCR089W	FIG2	"Cell wall adhesin, expressed specifically during mating; may be involved in maintenance of cell wall integrity during mating"	Verified	chr3:267431-272260	267431-272260	90.8%	59.48	64.27	57.66	52.19	20.28	26.66	61.87	54.92	23.47	0.23	0.22	0.10	-1.23	-0.37	Frag>80[684,685,686,687]
YCR090C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YCR090C is not an essential gene	Uncharacterized	chr3:272312-272860	272312-272860	99.4%	339.09	276.77	337.25	274.94	359.25	205.28	307.93	306.09	282.27	1.14	1.24	1.17	-0.12	-0.58	Matched[687]
YCR091W	KIN82	"Putative serine/threonine protein kinase, most similar to cyclic nucleotide-dependent protein kinase subfamily and the protein kinase C subfamily"	Verified	chr3:274401-276563	274401-276563	98.3%	43.26	72.88	60.65	88.39	214.87	227.56	58.07	74.52	221.22	0.21	0.30	0.92	1.57	1.45	Matched[688]
YCR092C	MSH3	"Mismatch repair protein, forms dimers with Msh2p that mediate repair of insertion or deletion mutations and removal of nonhomologous DNA ends, contains a PCNA (Pol30p) binding motif required for genome stability"	Verified	chr3:276761-279817	276761-279817	99.3%	50.09	57.67	45.48	43.83	47.45	33.94	53.88	44.65	40.70	0.20	0.18	0.17	-0.13	0.28	Frag>80[689]
YCR093W	CDC39	"Component of the CCR4-NOT complex, which has multiple roles in regulating mRNA levels including regulation of transcription and destabilizing mRNAs by deadenylation; basal transcription factor"	Verified	chr3:280114-286440	280114-286440	99.0%	158.96	129.91	126.24	115.71	97.20	143.48	144.44	120.98	120.34	0.53	0.49	0.50	-0.01	0.52	Frag>80[690,691,692]
YCR094W	CDC50	"Endosomal protein that regulates cell polarity, controls polarized growth; similar to Ynr048wp and Lem3p"	Verified	chr3:286759-287934	286759-287934	98.9%	168.59	146.23	133.32	125.58	123.00	87.74	157.41	129.45	105.37	0.58	0.53	0.44	-0.30	-0.05	Covered/w/another[693]
YCR095C		"Cytoplasmic protein required for replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts"	Uncharacterized	chr3:288167-289255	288167-289255	99.4%	126.61	111.82	108.12	119.21	132.15	63.77	119.21	113.67	97.96	0.44	0.46	0.41	-0.21	-0.36	Covered/w/another[693]
YCR095W-A		Putative protein of unknown function	Uncharacterized	chr3:289636-289794	289636-289794	98.7%	12.74	19.11	19.11	0.00	25.48	38.23	15.93	9.56	31.86	0.06	0.04	0.13	1.74	NaN	Covered[694]
YCR096C	HMRA2	Silenced copy of a2 at HMR; similarity to Alpha2p; required along with a1p for inhibiting expression of the HO endonuclease in a/alpha HO/HO diploid cells with an active mating-type interconversion system	Verified|silenced_gene	chr3:293176-293535	293176-293535	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.20	
YCR097W	HMRA1	Silenced copy of a1 at HMR; homeobox corepressor that interacts with Alpha2p to repress haploid-specific gene transcription in diploid cells	Verified|silenced_gene	chr3:293832-294318	293832-293936,293991-294236,294289-294318	98.9%	557.58	610.69	533.69	520.41	1160.31	581.48	584.14	527.05	870.89	2.16	2.14	3.61	0.72	-0.09	Matched[695]
YCR097W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; identified by homology to a hemiascomycetous yeast protein"	Dubious	chr3:294436-294702	294436-294702	47.2%	0.00	7.94	0.00	0.00	0.00	0.00	3.97	0.00	0.00	0.01	0.00	0.00	NaN	0.55	
YCR098C	GIT1	"Plasma membrane permease, mediates uptake of glycerophosphoinositol and glycerophosphocholine as sources of the nutrients inositol and phosphate; expression and transport rate are regulated by phosphate and inositol availability"	Verified	chr3:297046-298602	297046-298602	99.1%	18.79	25.91	15.55	13.60	27.86	20.73	22.35	14.58	24.29	0.08	0.06	0.10	0.74	0.50	
YCR099C		Putative protein of unknown function	Uncharacterized	chr3:300829-301296	300829-301296	96.3%	46.59	55.46	42.15	39.93	124.24	39.93	51.03	41.04	82.09	0.19	0.17	0.34	1.00	1.15	Covered/w/another[696]
YCR100C		Putative protein of unknown function	Uncharacterized	chr3:301268-302218	301268-302218	94.8%	24.41	55.47	36.61	38.83	56.58	42.16	39.94	37.72	49.37	0.15	0.15	0.20	0.39	1.26	Covered/w/another[696]
YCR101C		Putative protein of unknown function; localizes to the membrane fraction; YCR101C is not an essential gene	Uncharacterized	chr3:302479-303027	302479-303027	95.9%	17.09	24.68	26.58	17.09	28.48	34.17	20.88	21.83	31.32	0.08	0.09	0.13	0.52	1.79	Covered/w/another[696]
YCR102C		Putative protein of unknown function; involved in copper metabolism; similar to C.carbonum toxD gene; YCR102C is not an essential gene	Uncharacterized	chr3:304358-305464	304358-305464	45.0%	20.06	12.04	30.10	30.10	28.09	12.04	16.05	30.10	20.06	0.06	0.12	0.08	-0.58	0.09	
YCR102W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr3:306732-306929	306732-306929	82.5%	0.00	6.12	0.00	0.00	18.37	6.12	3.06	0.00	12.25	0.01	0.00	0.05	Inf	0.43	
YCR104W	PAU3	"Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme"	Verified	chr3:307798-308172	307798-308172	15.4%	34.63	0.00	17.32	17.32	103.90	51.95	17.32	17.32	77.92	0.06	0.07	0.32	2.17	0.92	Frag<80[698]
YCR105W	ADH7	NADPH-dependent medium chain alcohol dehydrogenase with broad substrate specificity; member of the cinnamyl family of alcohol dehydrogenases; may be involved in fusel alcohol synthesis or in aldehyde tolerance	Verified	chr3:309067-310152	309067-310152	98.6%	20.55	17.75	14.01	17.75	38.30	31.76	19.15	15.88	35.03	0.07	0.06	0.15	1.14	1.17	Frag>80[699,700]
YCR106W	RDS1	Zinc cluster transcription factor involved in conferring resistance to cycloheximide	Verified	chr3:310955-313453	310955-313453	81.5%	53.01	41.72	36.81	24.05	17.18	12.27	47.36	30.43	14.72	0.17	0.12	0.06	-1.05	-0.47	Frag<80[701]
YCR107W	AAD3	Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role	Verified	chr3:313887-314978	313887-314978	46.4%	94.75	71.06	51.32	33.56	41.45	13.82	82.91	42.44	27.64	0.31	0.17	0.11	-0.62	-0.81	Overlap[701]
YCR108C		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr3:315994-316185	315994-316185	4.6%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	NaN	
YDL248W	COS7	"Protein of unknown function, member of the DUP380 subfamily of conserved, often subtelomerically-encoded proteins; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr4:1802-2953	1802-2953	14.1%	117.01	153.96	61.59	80.06	178.60	110.85	135.49	70.82	144.73	0.50	0.29	0.60	1.03	0.73	Frag<80[702]
YDL247W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; identified by sequence comparison with hemiascomycetous yeast species"	Dubious	chr4:3762-3836	3762-3836	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.15	
YDL247W	MPH2	"Alpha-glucoside permease, transports maltose, maltotriose, alpha-methylglucoside, and turanose; identical to Mph3p; encoded in a subtelomeric position in a region likely to have undergone duplication"	Verified	chr4:5985-7814	5985-7814	1.2%	0.00	0.00	0.00	0.00	0.00	45.54	0.00	0.00	22.77	0.00	0.00	0.09	Inf	0.58	
YDL246C	SOR2	"Protein of unknown function, computational analysis of large-scale protein-protein interaction data suggests a possible role in fructose or mannose metabolism"	Uncharacterized	chr4:8683-9756	8683-9756	0.6%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.35	
YDL245C	HXT15	"Protein of unknown function with similarity to hexose transporter family members, expression is induced by low levels of glucose and repressed by high levels of glucose"	Verified	chr4:11657-13360	11657-13360	0.5%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.81	
YDL244W	THI13	"Protein involved in synthesis of the thiamine precursor hydroxymethylpyrimidine (HMP); member of a subtelomeric gene family including THI5, THI11, THI12, and THI13"	Verified	chr4:16204-17226	16204-17226	9.4%	10.38	31.13	0.00	0.00	10.38	0.00	20.75	0.00	5.19	0.08	0.00	0.02	Inf	0.30	
YDL243C	AAD4	"Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase, involved in the oxidative stress response"	Verified	chr4:17577-18566	17577-18566	37.1%	43.56	54.45	43.56	43.56	70.79	43.56	49.01	43.56	57.18	0.18	0.18	0.24	0.39	0.46	Frag<80[703,704]
YDL242W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr4:18959-19312	18959-19312	98.8%	17.15	22.87	25.72	14.29	14.29	25.72	20.01	20.01	20.01	0.07	0.08	0.08	0.00	0.76	
YDL241W		Putative protein of unknown function; YDL241W is not an essential gene	Uncharacterized	chr4:20635-21006	20635-21006	98.6%	114.56	103.65	100.92	95.47	43.64	54.55	109.10	98.19	49.10	0.40	0.40	0.20	-1.00	-0.41	Matched[705]
YDL240C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; identified by sequence comparison with hemiascomycetous yeast species"	Dubious	chr4:22471-22608	22471-22608	98.8%	0.00	7.33	7.33	0.00	14.67	0.00	3.67	3.67	7.33	0.01	0.01	0.03	1.00	-0.05	
YDL240W	LRG1	"Putative GTPase-activating protein (GAP) involved in the Pkc1p-mediated signaling pathway that controls cell wall integrity; appears to specifically regulate 1,3-beta-glucan synthesis"	Verified	chr4:22823-25876	22823-25876	98.9%	111.60	105.97	109.95	96.37	44.05	36.10	108.79	103.16	40.07	0.40	0.42	0.17	-1.36	-0.74	Matched[706]
YDL239C	ADY3	"Protein required for spore wall formation, thought to mediate assembly of a Don1p-containing structure at the leading edge of the prospore membrane via interaction with spindle pole body components; potentially phosphorylated by Cdc28p"	Verified	chr4:26403-28775	26403-28775	99.4%	70.39	123.83	71.67	55.98	127.22	97.54	97.11	63.82	112.38	0.36	0.26	0.47	0.82	0.70	Covered/w/another[707]
YDL238C	GUD1	"Guanine deaminase, a catabolic enzyme of the guanine salvage pathway producing xanthine and ammonia from guanine; activity is low in exponentially-growing cultures but expression is increased in post-diauxic and stationary-phase cultures"	Verified	chr4:28985-30454	28985-30454	98.9%	57.09	75.66	54.34	60.53	109.36	160.95	66.37	57.43	135.16	0.25	0.23	0.56	1.23	1.49	Covered/w/another[707]
YDL237W		Putative protein of unknown function; YDL237W is not an essential gene	Uncharacterized	chr4:30657-31829	30657-31829	98.9%	320.62	407.67	363.71	365.44	389.57	360.27	364.15	364.58	374.92	1.34	1.48	1.55	0.04	0.72	Matched[708]
YDL236W	PHO13	"Alkaline phosphatase specific for p-nitrophenyl phosphate, involved in dephosphorylation of histone II-A and casein"	Verified	chr4:32296-33234	32296-33234	98.8%	474.33	460.32	470.02	411.80	252.26	168.17	467.32	440.91	210.21	1.73	1.79	0.87	-1.07	-1.01	Matched[709]
YDL235C	YPD1	"Phosphorelay intermediate protein, phosphorylated by the plasma membrane sensor Sln1p in response to osmotic stress and then in turn phosphorylates the response regulators Ssk1p in the cytosol and Skn7p in the nucleus"	Verified	chr4:33415-33918	33415-33918	99.3%	317.76	295.78	321.76	307.77	387.71	253.81	306.77	314.76	320.76	1.13	1.28	1.33	0.03	-0.14	Matched[710]
YDL234C	GYP7	"GTPase-activating protein for yeast Rab family members including: Ypt7p (most effective), Ypt1p, Ypt31p, and Ypt32p (in vitro); involved in vesicle mediated protein trafficking"	Verified	chr4:34238-36478	34238-36478	99.1%	97.70	114.36	106.25	108.95	273.74	194.50	106.03	107.60	234.12	0.39	0.44	0.97	1.12	1.38	Frag>80[711,712]
YDL233W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YDL233W is not an essential gene	Uncharacterized	chr4:36798-38174	36798-38174	98.8%	50.70	60.99	77.89	53.64	138.15	117.58	55.85	65.77	127.86	0.21	0.27	0.53	0.96	1.68	Matched[713]
YDL232W	OST4	"Subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes protein asparagine-linked glycosylation; type I membrane protein required for incorporation of Ost3p or Ost6p into the OST complex"	Verified	chr4:38488-38598	38488-38598	99.3%	798.49	898.30	789.41	789.41	1061.63	725.90	848.39	789.41	893.76	3.13	3.20	3.70	0.18	-0.04	Matched[714]
YDL231C	BRE4	"Zinc finger protein containing five transmembrane domains; null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport"	Verified	chr4:38868-42245	38868-42245	98.9%	106.83	112.22	73.62	66.73	43.69	46.38	109.52	70.17	45.04	0.40	0.28	0.19	-0.64	-0.43	Frag>80[714,715]
YDL230W	PTP1	"Phosphotyrosine-specific protein phosphatase that dephosphorylates a broad range of substrates in vivo, including Fpr3p; localized to the cytoplasm and the mitochondria"	Verified	chr4:42701-43708	42701-43708	98.5%	111.77	115.80	91.63	99.69	218.50	156.07	113.78	95.66	187.29	0.42	0.39	0.78	0.97	1.23	Matched[716]
YDL229W	SSB1	"Cytoplasmic ATPase that is a ribosome-associated molecular chaperone, functions with J-protein partner Zuo1p; may be involved in folding of newly-made polypeptide chains; member of the HSP70 family; interacts with phosphatase subunit Reg1p"	Verified	chr4:44066-45907	44066-45907	23.9%	7866.14	5173.00	6833.81	5908.11	726.04	471.92	6519.57	6370.96	598.98	24.07	25.86	2.48	-3.41	-3.12	Frag<80[717,718,719]
YDL228C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; almost completely overlaps the verified gene SSB1"	Dubious	chr4:45278-45919	45278-45919	40.5%	10415.24	6727.07	8709.46	7483.91	1025.77	580.12	8571.15	8096.69	802.95	31.64	32.87	3.33	-3.33	-0.04	Frag>80[718,719]
YDL227C	HO	"Site-specific endonuclease required for gene conversion at the MAT locus (homothallic switching) through the generation of a ds DNA break; expression restricted to mother cells in late G1 as controlled by Swi4p-Swi6p, Swi5p and Ash1p"	Verified	chr4:46272-48032	46272-48032	99.2%	252.94	218.60	199.72	107.01	18.88	5.15	235.77	153.37	12.02	0.87	0.62	0.05	-3.67	-3.33	Matched[720]
YDL226C	GCS1	"ADP-ribosylation factor GTPase activating protein (ARF GAP), involved in ER-Golgi transport; shares functional similarity with Glo3p"	Verified	chr4:51116-52174	51116-52174	99.0%	448.51	472.37	447.55	383.62	333.04	218.53	460.44	415.59	275.79	1.70	1.69	1.14	-0.59	-0.31	Matched[723]
YDL225W	SHS1	"One of five related septins (Cdc3p, Cdc10p, Cdc11p, Cdc12p, Shs1p) that form a cortical filamentous collar at the mother-bud neck which is necessary for normal morphogenesis and cytokinesis"	Verified	chr4:52446-54101	52446-54101	98.6%	298.80	238.18	243.69	261.45	245.53	186.14	268.49	252.57	215.83	0.99	1.03	0.89	-0.23	0.25	Frag<80[724]
YDL224C	WHI4	Putative RNA binding protein and partially redundant Whi3p homolog that regulates the cell size requirement for passage through Start and commitment to cell division	Verified	chr4:54398-56347	54398-56347	98.8%	239.87	272.06	235.20	215.47	190.03	202.49	255.97	225.33	196.26	0.94	0.91	0.81	-0.20	0.44	Covered[725]
YDL223C	HBT1	"Substrate of the Hub1p ubiquitin-like protein that localizes to the shmoo tip (mating projection); mutants are defective for mating projection formation, thereby implicating Hbt1p in polarized cell morphogenesis"	Verified	chr4:57266-60406	57266-60406	98.9%	42.83	62.47	36.71	28.02	279.52	393.83	52.65	32.36	336.67	0.19	0.13	1.39	3.38	3.75	Covered/w/another[726]
YDL222C	FMP45	"Integral membrane protein localized to mitochondria (untagged protein) and eisosomes, immobile patches at the cortex associated with endocytosis; sporulation and sphingolipid content are altered in mutants; has homologs SUR7 and YNL194C"	Verified	chr4:60873-61802	60873-61802	98.2%	14.23	21.89	13.14	10.95	3285.02	2618.38	18.06	12.04	2951.70	0.07	0.05	12.23	7.94	5.56	Covered/w/another[726]
YDL221W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the 3' end of essential gene CDC13"	Dubious	chr4:62012-62563	62012-62563	98.2%	60.87	94.07	60.87	33.20	55.33	33.20	77.47	47.03	44.27	0.29	0.19	0.18	-0.09	0.52	Covered/w/another[727]
YDL220C	CDC13	"Single stranded DNA-binding protein found at TG1-3 telomere G-tails; regulates telomere replication through recruitment of specific sub-complexes, but the essential function is telomere capping"	Verified	chr4:62245-65019	62245-65019	98.7%	49.29	45.63	34.32	23.36	27.38	20.44	47.46	28.84	23.91	0.18	0.12	0.10	-0.27	0.06	Frag>80[727,728]
YDL219W	DTD1	"D-Tyr-tRNA(Tyr) deacylase, functions in protein translation, may affect nonsense suppression via alteration of the protein synthesis machinery; ubiquitous among eukaryotes"	Verified	chr4:65243-65766	65243-65307,65379-65766	98.6%	235.10	212.71	241.81	199.27	300.03	183.60	223.90	220.54	241.81	0.83	0.90	1.00	0.13	-0.38	Frag>80[728,729]
YDL218W		Putative protein of unknown function; YDL218W transcription is regulated by Azf1p and induced by starvation and aerobic conditions	Uncharacterized	chr4:66494-67447	66494-67447	98.7%	29.73	23.36	15.93	12.74	41.41	38.23	26.55	14.34	39.82	0.10	0.06	0.16	1.47	1.41	Matched[730]
YDL217C	TIM22	Component of the mitochondrial Tim54p-Tim22p complex involved in insertion of polytopic proteins into the inner membrane	Verified	chr4:67984-68607	67984-68607	99.1%	232.87	163.33	190.82	181.12	119.67	76.01	198.10	185.97	97.84	0.73	0.75	0.41	-0.93	-0.45	Matched[731]
YDL216C	RRI1	Catalytic subunit of the COP9 signalosome (CSN) complex that acts as an isopeptidase in cleaving the ubiquitin-like protein Nedd8 from SCF ubiquitin ligases; metalloendopeptidase involved in the adaptation to pheromone signaling	Verified	chr4:68998-70320	68998-70320	99.4%	65.40	67.68	61.60	62.36	104.95	63.12	66.54	61.98	84.04	0.25	0.25	0.35	0.44	0.83	Matched[732]
YDL215C	GDH2	"NAD(+)-dependent glutamate dehydrogenase, degrades glutamate to ammonia and alpha-ketoglutarate; expression sensitive to nitrogen catabolite repression and intracellular ammonia levels"	Verified	chr4:70641-73919	70641-73919	99.1%	140.63	184.33	135.71	117.86	194.18	108.32	162.48	126.78	151.25	0.60	0.51	0.63	0.25	0.14	Matched[733]
YDL214C	PRR2	"Serine/threonine protein kinase that inhibits pheromone induced signalling downstream of MAPK, possibly at the level of the Ste12p transcription factor"	Verified	chr4:74447-76546	74447-76546	98.9%	13.96	17.33	15.40	9.63	64.97	37.54	15.64	12.51	51.26	0.06	0.05	0.21	2.03	2.41	Matched[734]
YDL213C	NOP6	Putative RNA-binding protein implicated in ribosome biogenesis; contains an RNA recognition motif (RRM) and has similarity to hydrophilins; NOP6 may be a fungal-specific gene as no homologs have been yet identified in higher eukaryotes	Verified	chr4:77290-77967	77290-77967	99.2%	489.01	288.35	389.42	300.24	65.40	69.86	388.68	344.83	67.63	1.43	1.40	0.28	-2.35	-2.09	Matched[735]
YDL212W	SHR3	"Endoplasmic reticulum packaging chaperone, required for incorporation of amino acid permeases into COPII coated vesicles for transport to the cell surface"	Verified	chr4:78427-79059	78427-79059	98.8%	1103.71	1001.33	1068.52	1028.53	454.28	305.52	1052.52	1048.52	379.90	3.89	4.26	1.57	-1.46	-2.14	Matched[736]
YDL211C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the vacuole	Uncharacterized	chr4:79295-80413	79295-80413	98.8%	69.64	66.02	46.12	38.89	23.51	18.09	67.83	42.51	20.80	0.25	0.17	0.09	-1.03	-0.79	Matched[737]
YDL210W	UGA4	Permease that serves as a gamma-aminobutyrate (GABA) transport protein involved in the utilization of GABA as a nitrogen source; catalyzes the transport of putrescine and delta-aminolevulinic acid (ALA); localized to the vacuolar membrane	Verified	chr4:84271-85986	84271-85986	99.0%	11.19	18.26	14.13	5.89	11.78	15.90	14.72	10.01	13.84	0.05	0.04	0.06	0.47	-0.21	Overlap[738]
YDL209C	CWC2	"Protein involved in pre-mRNA splicing, component of a complex containing Cef1p; interacts with Prp19p; contains an RNA recognition motif; has similarity to S. pombe Cwf2p"	Verified	chr4:86208-87227	86208-87227	99.3%	94.78	79.97	87.87	82.93	29.62	17.77	87.38	85.40	23.69	0.32	0.35	0.10	-1.85	-1.58	Covered[738]
YDL208W	NHP2	"Nuclear protein related to mammalian high mobility group (HMG) proteins, essential for function of H/ACA-type snoRNPs, which are involved in 18S rRNA processing"	Verified	chr4:87513-87983	87513-87983	98.5%	2162.61	1403.65	1522.24	1259.19	183.27	105.65	1783.13	1390.71	144.46	6.58	5.65	0.60	-3.27	-3.45	Matched[739]
YDL207W	GLE1	Cytoplasmic nucleoporin required for polyadenylated RNA export but not for protein import; component of Nup82p nuclear pore subcomplex; contains a nuclear export signal	Verified	chr4:88249-89865	88249-89865	98.5%	181.42	183.93	148.15	133.08	103.58	78.47	182.67	140.62	91.02	0.67	0.57	0.38	-0.63	-0.17	Matched[740]
YDL206W		Putative protein of unknown function; YDL206W is not an essential protein	Uncharacterized	chr4:90177-92465	90177-92465	99.1%	50.71	61.29	56.88	48.50	105.38	65.26	56.00	52.69	85.32	0.21	0.21	0.35	0.70	0.53	Matched[741]
YDL205C	HEM3	"Phorphobilinogen deaminase, catalyzes the conversion of 4-porphobilinogen to hydroxymethylbilane, the third step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus; expression is regulated by Hap2p-Hap3p"	Verified	chr4:92763-93746	92763-93746	99.0%	431.08	439.29	344.87	344.87	201.17	224.78	435.19	344.87	212.98	1.61	1.40	0.88	-0.70	-0.12	Matched[742]
YDL204W	RTN2	Protein of unknown function; has similarity to mammalian reticulon proteins; member of the RTNLA (reticulon-like A) subfamily	Verified	chr4:94606-95787	94606-95787	98.7%	59.15	226.30	144.01	168.87	3305.38	3840.27	142.72	156.44	3572.83	0.53	0.64	14.80	4.51	3.95	Matched[744]
YDL203C		"Putative protein of unknown function; GFP-fusion protein expression is induced in response to the DNA-damaging agent MMS; the authentic, non-tagged protein is detected in purified mitochondria"	Uncharacterized	chr4:96083-97954	96083-97954	99.0%	97.62	93.84	83.06	74.43	56.63	58.25	95.73	78.74	57.44	0.35	0.32	0.24	-0.46	0.14	Matched[745]
YDL202W	MRPL11	Mitochondrial ribosomal protein of the large subunit	Verified	chr4:98476-99225	98476-99225	98.5%	282.81	278.76	290.93	296.35	257.10	185.39	280.78	293.64	221.24	1.04	1.19	0.92	-0.41	-0.13	Matched[746]
YDL201W	TRM8	Subunit of a tRNA methyltransferase complex composed of Trm8p and Trm82p that catalyzes 7-methylguanosine modification of tRNA	Verified	chr4:99562-100422	99562-100422	98.4%	322.31	175.91	234.95	198.35	36.60	22.43	249.11	216.65	29.52	0.92	0.88	0.12	-2.88	-1.43	Matched[747]
YDL200C	MGT1	DNA repair methyltransferase (6-O-methylguanine-DNA methylase) involved in protection against DNA alkylation damage	Verified	chr4:100502-101068	100502-101068	99.3%	115.47	90.60	119.02	90.60	259.36	99.48	103.03	104.81	179.42	0.38	0.43	0.74	0.78	-0.01	Matched[748]
YDL199C		"Putative transporter, member of the sugar porter family"	Uncharacterized	chr4:101291-103354	101291-103354	98.8%	24.52	48.55	33.84	32.37	100.04	96.12	36.54	33.10	98.08	0.13	0.13	0.41	1.57	2.31	Matched[749]
YDL198C	GGC1	"Mitochondrial GTP/GDP transporter, essential for mitochondrial genome maintenance; has a role in mitochondrial iron transport; member of the mitochondrial carrier family"	Verified	chr4:103650-104552	103650-104552	98.7%	410.45	603.34	379.05	363.35	172.70	131.21	506.89	371.20	151.96	1.87	1.51	0.63	-1.29	-1.19	Matched[750]
YDL197C	ASF2	Anti-silencing protein that causes derepression of silent loci when overexpressed	Verified	chr4:104918-106495	104918-106495	99.0%	131.89	133.81	122.29	103.72	220.89	167.75	132.85	113.01	194.32	0.49	0.46	0.81	0.78	1.23	Matched[751]
YDL196W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; open reading frame is located in promoter region of essential gene SEC31"	Dubious	chr4:106742-107071	106742-107071	99.0%	18.36	18.36	3.06	6.12	6.12	9.18	18.36	4.59	7.65	0.07	0.02	0.03	0.74	0.81	Overlap[751,752]
YDL195W	SEC31	"Essential phosphoprotein component (p150) of the COPII coat of secretory pathway vesicles, in complex with Sec13p; required for ER-derived transport vesicle formation"	Verified	chr4:107209-111030	107209-111030	98.9%	478.77	426.13	473.74	466.34	387.78	644.35	452.45	470.04	516.06	1.67	1.91	2.14	0.13	1.07	Frag>80[752,753]
YDL194W	SNF3	Plasma membrane glucose sensor that regulates glucose transport; has 12 predicted transmembrane segments; long cytoplasmic C-terminal tail is required for low glucose induction of hexose transporter genes HXT2 and HXT4	Verified	chr4:111581-114235	111581-114235	98.8%	38.89	51.09	50.71	40.80	55.67	48.42	44.99	45.75	52.04	0.17	0.19	0.22	0.19	0.35	Matched[754]
YDL193W	NUS1	"Prenyltransferase, required for cell viability; involved in protein trafficking"	Verified	chr4:114673-115800	114673-115800	98.6%	205.87	222.05	236.43	210.36	427.01	332.62	213.96	223.40	379.82	0.79	0.91	1.57	0.77	1.07	Matched[755]
YDL192W	ARF1	"ADP-ribosylation factor, GTPase of the Ras superfamily involved in regulation of coated formation vesicles in intracellular trafficking within the Golgi; functionally interchangeable with Arf2p"	Verified	chr4:116322-116867	116322-116867	77.3%	5203.79	4281.99	4791.47	4469.19	3561.61	2334.12	4742.89	4630.33	2947.87	17.51	18.80	12.21	-0.65	-2.55	Matched[756]
YDL191W	RPL35A	"Protein component of the large (60S) ribosomal subunit, identical to Rpl35Bp and has similarity to rat L35 ribosomal protein"	Verified	chr4:117665-118518	117665-117667,118159-118518	10.5%	3278.69	2596.72	2203.28	2413.11	760.66	393.44	2937.70	2308.20	577.05	10.84	9.37	2.39	-2.00	-2.23	Frag<80[757,758,759]
YDL190C	UFD2	"Ubiquitin chain assembly factor (E4) that cooperates with a ubiquitin-activating enzyme (E1), a ubiquitin-conjugating enzyme (E2), and a ubiquitin protein ligase (E3) to conjugate ubiquitin to substrates; also functions as an E3"	Verified	chr4:118708-121593	118708-121593	99.0%	190.15	181.39	175.79	190.50	179.64	188.39	185.77	183.14	184.02	0.69	0.74	0.76	0.01	-0.21	Frag>80[759,760]
YDL189W	RBS1	"Protein of unknown function, identified as a high copy suppressor of psk1 psk2 mutations that confer temperature-sensitivity for galactose utilization; proposed to bind single-stranded nucleic acids via its R3H domain"	Verified	chr4:122078-123590	122078-122079,122178-123590	98.6%	255.06	272.26	236.43	180.55	141.14	92.42	263.66	208.49	116.78	0.97	0.85	0.48	-0.84	-0.47	Matched[761]
YDL188C	PPH22	"Catalytic subunit of protein phosphatase 2A, functionally redundant with Pph21p; methylated at C terminus; forms alternate complexes with several regulatory subunits; involved in signal transduction and regulation of mitosis"	Verified	chr4:123866-124999	123866-124999	66.1%	278.65	339.98	363.98	291.98	385.31	294.65	309.32	327.98	339.98	1.14	1.33	1.41	0.05	0.34	Frag>80[762,763,764]
YDL186W		Putative protein of unknown function; YDL186W is not an essential gene	Uncharacterized	chr4:125617-126450	125617-126450	98.6%	32.85	64.48	25.55	23.12	57.18	29.20	48.67	24.33	43.19	0.18	0.10	0.18	0.83	0.14	Frag>80[765,766]
YDL187C		"Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:125510-125839	125510-125839	98.5%	21.54	30.77	9.23	18.46	6.15	15.39	26.16	13.85	10.77	0.10	0.06	0.04	-0.36	-0.16	Matched[765]
YDL185W	TFP1	"Vacuolar ATPase V1 domain subunit A containing the catalytic nucleotide binding sites; protein precursor undergoes self-catalyzed splicing to yield the extein Tfp1p and the intein Vde (PI-SceI), which is a site-specific endonuclease"	Verified	chr4:126788-130003	126788-130003	98.8%	1581.51	1990.50	1513.50	1555.06	1111.75	1395.11	1786.00	1534.28	1253.43	6.59	6.23	5.19	-0.29	-0.30	Matched[767]
YDL185C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YDL185W; identified by homology with hemiascomycetous yeast species"	Dubious	chr4:126609-126836	126609-126836	99.0%	385.60	673.68	412.19	491.97	163.99	487.53	529.64	452.08	325.76	1.96	1.84	1.35	-0.47	0.05	Covered/w/another[767]
YDL184C	RPL41A	"Ribosomal protein L47 of the large (60S) ribosomal subunit, identical to Rpl41Bp and has similarity to rat L41 ribosomal protein; comprised of only 25 amino acids; rpl41a rpl41b double null mutant is viable"	Verified	chr4:130408-130485	130408-130485	37.5%	9401.71	5709.40	7965.81	6905.98	6393.16	3282.05	7555.56	7435.90	4837.61	27.89	30.18	20.04	-0.62	-2.19	Matched[768]
YDL183C		Putative protein of unknown function; YDL183C is not an essential gene	Uncharacterized	chr4:130872-131834	130872-131834	99.1%	34.59	44.02	38.78	36.68	74.41	52.40	39.30	37.73	63.41	0.15	0.15	0.26	0.75	1.31	Matched[769]
YDL182W	LYS20	"Homocitrate synthase isozyme, catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, which is the first step in the lysine biosynthesis pathway; highly similar to the other isozyme, Lys21p"	Verified	chr4:133438-134724	133438-134724	39.4%	565.56	614.83	435.50	258.15	118.24	37.44	590.20	346.83	77.84	2.18	1.41	0.32	-2.16	-1.60	Frag<80[770,771,772,773]
YDL181W	INH1	"Protein that inhibits ATP hydrolysis by the F1F0-ATP synthase, inhibitory function is enhanced by stabilizing proteins Stf1p and Stf2p; has similarity to Stf1p and both Inh1p and Stf1p exhibit the potential to form coiled-coil structures"	Verified	chr4:135180-135437	135180-135437	98.2%	426.46	529.12	647.58	742.35	1476.80	872.66	477.79	694.97	1174.73	1.76	2.82	4.87	0.76	0.50	Matched[774]
YDL180W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the vacuole	Uncharacterized	chr4:135897-137540	135897-137540	99.0%	109.39	115.54	105.09	92.18	122.91	90.96	112.47	98.64	106.93	0.42	0.40	0.44	0.12	0.61	Matched[775]
YDL179W	PCL9	"Cyclin, forms a functional kinase complex with Pho85p cyclin-dependent kinase (Cdk), expressed in late M/early G1 phase, activated by Swi5p"	Verified	chr4:138292-139206	138292-139206	99.1%	124.65	145.61	138.99	113.62	163.26	91.56	135.13	126.30	127.41	0.50	0.51	0.53	0.01	0.52	Frag>80[776,777]
YDL178W	DLD2	"D-lactate dehydrogenase, located in the mitochondrial matrix"	Verified	chr4:139523-141115	139523-141115	98.4%	357.36	308.86	346.51	364.38	232.28	150.60	333.11	355.45	191.44	1.23	1.44	0.79	-0.89	-0.70	Matched[778]
YDL177C		Putative protein of unknown function; similar to the mouse IMPACT gene; YDL177C is not an essential gene	Uncharacterized	chr4:141210-141722	141210-141722	99.3%	92.22	107.92	113.81	58.87	117.73	78.49	100.07	86.34	98.11	0.37	0.35	0.41	0.18	0.06	Matched[779]
YDL176W		Putative protein of unknown function; YDL176W is not an essential gene	Uncharacterized	chr4:142098-144224	142098-144224	98.9%	69.44	87.99	61.35	47.09	52.79	36.62	78.71	54.22	44.71	0.29	0.22	0.19	-0.28	-0.17	Covered/w/another[780]
YDL175C	AIR2	"RING finger protein that interacts with the arginine methyltransferase Hmt1p; may regulate methylation of Npl3p, which modulates Npl3p function in mRNA processing and export; has similarity to Air1p"	Verified	chr4:144485-145519	144485-145519	98.9%	112.34	107.45	79.12	61.54	99.64	65.45	109.89	70.33	82.54	0.41	0.29	0.34	0.23	0.67	Covered/w/another[780]
YDL174C	DLD1	"D-lactate dehydrogenase, oxidizes D-lactate to pyruvate, transcription is heme-dependent, repressed by glucose, and derepressed in ethanol or lactate; located in the mitochondrial inner membrane"	Verified	chr4:145827-147590	145827-147590	98.9%	264.20	289.99	397.16	346.16	365.07	297.44	277.10	371.66	331.26	1.02	1.51	1.37	-0.17	0.39	Matched[781]
YDL173W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YDL173W is not an essential gene	Uncharacterized	chr4:148192-149079	148192-149079	98.3%	444.36	477.57	408.86	388.24	489.02	463.83	460.97	398.55	476.43	1.70	1.62	1.97	0.26	0.06	Matched[783]
YDL172C		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr4:148608-149087	148608-149087	98.2%	507.16	522.02	451.99	460.48	534.75	485.94	514.59	456.23	510.34	1.90	1.85	2.11	0.16	0.11	Matched[783]
YDL171C	GLT1	"NAD(+)-dependent glutamate synthase (GOGAT), synthesizes glutamate from glutamine and alpha-ketoglutarate; with Gln1p, forms the secondary pathway for glutamate biosynthesis from ammonia; expression regulated by nitrogen source"	Verified	chr4:149204-155641	149204-155641	99.1%	265.95	294.01	245.27	213.92	43.88	67.70	279.98	229.59	55.79	1.03	0.93	0.23	-2.04	-1.00	Matched[784]
YDL170W	UGA3	"Transcriptional activator necessary for gamma-aminobutyrate (GABA)-dependent induction of GABA genes (such as UGA1, UGA2, UGA4); zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type; localized to the nucleus"	Verified	chr4:156319-157905	156319-157905	98.8%	83.57	167.77	57.41	48.48	61.88	74.64	125.67	52.95	68.26	0.46	0.21	0.28	0.37	0.94	Covered/w/another[785]
YDL169C	UGX2	"Protein of unknown function, transcript accumulates in response to any combination of stress conditions"	Verified	chr4:158065-158736	158065-158736	99.3%	37.46	70.43	53.95	62.94	209.79	127.37	53.95	58.44	168.58	0.20	0.24	0.70	1.53	1.47	Covered/w/another[785]
YDL168W	SFA1	"Bifunctional enzyme containing both alcohol dehydrogenase and glutathione-dependent formaldehyde dehydrogenase activities, functions in formaldehyde detoxification and formation of long chain and complex alcohols, regulated by Hog1p-Sko1p"	Verified	chr4:159605-160765	159605-160765	98.6%	233.26	160.75	249.86	215.79	298.79	243.75	197.01	232.83	271.27	0.73	0.95	1.12	0.22	0.58	Frag>80[786,787]
YDL167C	NRP1	"Protein of unknown function, rich in asparagine residues"	Verified	chr4:160996-163155	160996-163155	99.2%	199.81	125.58	118.58	88.23	11.20	2.80	162.69	103.40	7.00	0.60	0.42	0.03	-3.88	-2.27	Matched[788]
YDL166C	FAP7	"Essential NTPase required for small ribosome subunit synthesis, mediates processing of the 20S pre-rRNA at site D in the cytoplasm but associates only transiently with 43S preribosomes via Rps14p, may be the endonuclease for site D"	Verified	chr4:163450-164043	163450-164043	99.4%	291.38	196.51	210.07	198.21	89.79	55.90	243.95	204.14	72.85	0.90	0.83	0.30	-1.49	-1.68	Matched[789]
YDL165W	CDC36	"Component of the CCR4-NOT complex, which has multiple roles in regulating mRNA levels including regulation of transcription and destabilizing mRNAs by deadenylation; basal transcription factor"	Verified	chr4:164291-164866	164291-164866	98.6%	262.36	246.52	244.75	258.84	295.82	117.98	254.44	251.80	206.90	0.94	1.02	0.86	-0.28	-0.57	Covered/w/another[790]
YDL163W		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data; partially overlaps the verified gene CDC9/YDL164C encoding DNA ligase"	Dubious	chr4:166957-167259	166957-167259	98.6%	50.22	103.79	53.57	46.88	20.09	30.13	77.01	50.22	25.11	0.28	0.20	0.10	-1.00	-0.06	Covered/w/another[790]
YDL164C	CDC9	"DNA ligase found in the nucleus and mitochondria, an essential enzyme that joins Okazaki fragments during DNA replication; also acts in nucleotide excision repair, base excision repair, and recombination"	Verified	chr4:164988-167255	164988-167255	99.1%	150.42	117.93	121.94	110.81	62.30	52.51	134.18	116.38	57.41	0.50	0.47	0.24	-1.02	-0.54	Matched[790]
YDL161W	ENT1	Epsin-like protein involved in endocytosis and actin patch assembly and functionally redundant with Ent2p; binds clathrin via a clathrin-binding domain motif at C-terminus	Verified	chr4:167715-169079	167715-169079	98.4%	238.14	191.26	174.88	204.65	206.14	169.67	214.70	189.77	187.91	0.79	0.77	0.78	-0.01	0.58	Covered/w/another[791]
YDL162C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps ENT1/YDL161W, a verified gene involved in endocytosis and actin cortical patch assembly"	Dubious	chr4:167360-167716	167360-167716	98.0%	8.57	0.00	14.29	2.86	14.29	5.71	4.29	8.57	10.00	0.02	0.03	0.04	0.22	0.58	Overlap[790,791]
YDL160C-A		Putative protein of unknown function	Uncharacterized	chr4:169367-169609	169367-169609	99.4%	215.25	169.71	186.27	165.57	157.30	99.34	192.48	175.92	128.32	0.71	0.71	0.53	-0.46	NaN	Covered/w/another[791]
YDL160C	DHH1	"Cytoplasmic DExD/H-box helicase, stimulates mRNA decapping, coordinates distinct steps in mRNA function and decay, interacts with both the decapping and deadenylase complexes, may have a role in mRNA export and translation"	Verified	chr4:170411-171931	170411-171931	99.0%	528.12	495.57	506.86	514.84	580.60	646.37	511.85	510.85	613.49	1.89	2.07	2.54	0.26	0.60	Matched[792]
YDL159W-A		Putative protein of unknown function; identified by sequence comparison with hemiascomycetous yeast species	Uncharacterized	chr4:172183-172314	172183-172314	99.8%	60.74	106.30	98.70	83.52	60.74	75.93	83.52	91.11	68.33	0.31	0.37	0.28	-0.42	0.41	Covered/w/another[792]
YDL159W	STE7	"Signal transducing MAP kinase kinase involved in pheromone response, where it phosphorylates Fus3p, and in the pseudohyphal/invasive growth pathway, through phosphorylation of Kss1p; phosphorylated by Ste11p, degraded by ubiquitin pathway"	Verified	chr4:172482-174029	172482-174029	98.8%	68.62	70.58	58.82	56.20	98.68	77.12	69.60	57.51	87.90	0.26	0.23	0.36	0.61	0.12	Matched[793]
YDL159C-B		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr4:173057-173233	173057-173233	99.2%	68.36	56.97	28.48	62.66	96.84	74.06	62.66	45.57	85.45	0.23	0.18	0.35	0.91	NaN	Matched[793]
YDL158C		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr4:173867-174175	173867-174175	99.1%	221.98	254.62	238.30	189.34	173.01	127.31	238.30	213.82	150.16	0.88	0.87	0.62	-0.51	-1.81	Frag<80[794]
YDL157C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr4:174233-174589	174233-174589	99.1%	647.12	480.40	534.09	519.96	415.40	327.80	563.76	527.02	371.60	2.08	2.14	1.54	-0.50	-0.91	Matched[794]
YDL156W		Putative protein of unknown function; protein sequence contains three WD domains (WD-40 repeat); green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus	Uncharacterized	chr4:174919-176487	174919-176487	98.5%	69.90	62.13	62.13	60.19	21.36	40.77	66.01	61.16	31.06	0.24	0.25	0.13	-0.98	0.13	Covered/w/another[795]
YDL155W	CLB3	"B-type cyclin involved in cell cycle progression; activates Cdc28p to promote the G2/M transition; may be involved in DNA replication and spindle assembly; accumulates during S phase and G2, then targeted for ubiquitin-mediated degradation"	Verified	chr4:176774-178057	176774-178057	98.6%	214.89	191.19	218.05	191.19	160.38	121.67	203.04	204.62	141.02	0.75	0.83	0.58	-0.54	-0.25	Covered/w/another[795]
YDL154W	MSH5	"Protein of the MutS family, forms a dimer with Msh4p that facilitates crossovers between homologs during meiosis; msh5-Y823H mutation confers tolerance to DNA alkylating agents; homologs present in C. elegans and humans"	Verified	chr4:178335-181040	178335-181040	98.7%	46.80	45.67	29.95	37.44	59.15	29.95	46.24	33.69	44.55	0.17	0.14	0.18	0.40	0.08	Frag<80[796]
YDL152W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF SAS10/YDL153C, a component of the small ribosomal subunit processosome"	Dubious	chr4:182823-183188	182823-183188	99.1%	129.63	52.40	71.71	71.71	2.76	0.00	91.01	71.71	1.38	0.34	0.29	0.01	-5.70	-0.15	Overlap[797]
YDL153C	SAS10	"Component of the small (ribosomal) subunit (SSU) processosome required for pre-18S rRNa processing; essential nucleolar protein that, when overproduced, disrupts silencing"	Verified	chr4:181187-183019	181187-183019	99.5%	309.79	125.56	188.07	185.33	21.93	4.39	217.68	186.70	13.16	0.80	0.76	0.05	-3.83	-2.50	Matched[797]
YDL150W	RPC53	RNA polymerase III subunit C53	Verified	chr4:183344-184612	183344-184612	98.0%	255.60	164.77	178.44	134.23	36.97	15.27	210.19	156.33	26.12	0.78	0.63	0.11	-2.58	-0.89	Matched[798]
YDL151C	BUD30	"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; 96% of ORF overlaps the verified gene RPC53; diploid mutant displays a weak budding pattern phenotype in a systematic assay"	Dubious	chr4:183319-183900	183319-183900	97.7%	232.17	130.16	154.78	109.05	24.62	5.28	181.17	131.92	14.95	0.67	0.54	0.06	-3.14	-0.42	Covered/w/another[798]
YDL149W	ATG9	"Transmembrane protein involved in formation of Cvt and autophagic vesicles; cycles between the pre-autophagosomal structure and other cytosolic punctate structures, not found in autophagosomes"	Verified	chr4:184926-187919	184926-187919	98.8%	36.83	53.05	37.85	41.56	62.52	70.63	44.94	39.71	66.57	0.17	0.16	0.28	0.75	1.01	Matched[799]
YDL148C	NOP14	"Nucleolar protein, forms a complex with Noc4p that mediates maturation and nuclear export of 40S ribosomal subunits; also present in the small subunit processome complex, which is required for processing of pre-18S rRNA"	Verified	chr4:188155-190587	188155-190587	99.3%	288.78	131.15	188.24	152.25	15.72	4.14	209.96	170.25	9.93	0.78	0.69	0.04	-4.10	-3.63	Matched[800]
YDL147W	RPN5	"Essential, non-ATPase regulatory subunit of the 26S proteasome lid, similar to mammalian p55 subunit and to another S. cerevisiae regulatory subunit, Rpn7p"	Verified	chr4:190925-192262	190925-192262	98.8%	687.66	597.64	655.89	651.35	1265.63	845.77	642.65	653.62	1055.70	2.37	2.65	4.37	0.69	0.55	Matched[801]
YDL146W	LDB17	"Protein of unknown function; GFP-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck; null mutant shows a reduced affinity for the alcian blue dye suggesting a decreased net negative charge of the cell surface"	Verified	chr4:192751-194226	192751-194226	99.0%	102.62	140.25	120.41	79.36	251.77	134.09	121.44	99.89	192.93	0.45	0.41	0.80	0.95	1.10	Matched[802]
YDL145C	COP1	"Alpha subunit of COPI vesicle coatomer complex, which surrounds transport vesicles in the early secretory pathway"	Verified	chr4:194572-198177	194572-198177	99.0%	766.68	688.25	727.19	678.73	334.74	419.34	727.47	702.96	377.04	2.69	2.85	1.56	-0.90	-0.38	Frag>80[803,804,805]
YDL144C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YDL144C is not an essential gene.	Uncharacterized	chr4:198663-199733	198663-199733	98.8%	119.06	132.29	132.29	125.67	251.35	168.20	125.67	128.98	209.77	0.46	0.52	0.87	0.70	0.76	Matched[806]
YDL143W	CCT4	"Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo"	Verified	chr4:199997-201583	199997-201583	98.6%	703.44	468.96	634.44	575.02	391.65	322.01	586.20	604.73	356.83	2.16	2.45	1.48	-0.76	-0.45	Matched[807]
YDL142C	CRD1	"Cardiolipin synthase; produces cardiolipin, which is an important constituent of mitochondrial membranes; required for normal mitochondrial membrane potential and function"	Verified	chr4:201720-202571	201720-202571	99.0%	81.83	103.18	90.13	124.52	269.21	126.90	92.50	107.33	198.05	0.34	0.44	0.82	0.88	0.85	Frag>80[808,809]
YDL141W	BPL1	"Biotin:apoprotein ligase, covalently modifies proteins with the addition of biotin, required for acetyl-CoA carboxylase (Acc1p) holoenzyme formation"	Verified	chr4:203040-205112	203040-205112	98.9%	114.62	100.48	110.23	83.90	74.63	72.19	107.55	97.07	73.41	0.40	0.39	0.30	-0.40	0.03	Matched[810]
YDL140C	RPO21	"RNA polymerase II largest subunit B220, part of central core; phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors; similar to bacterial beta-prime"	Verified	chr4:205361-210562	205361-210562	97.5%	379.27	319.71	345.75	311.23	159.36	307.29	349.49	328.49	233.32	1.29	1.33	0.97	-0.49	0.45	Frag<80[811]
YDL139C	SCM3	"Nonhistone component of centromeric chromatin that binds stoichiometrically to CenH3-H4 histones, required for kinetochore assembly; contains nuclear export signal (NES); required for G2/M progression and localization of Cse4p"	Verified	chr4:211376-212047	211376-212047	99.4%	53.91	46.42	52.41	40.43	46.42	49.41	50.16	46.42	47.92	0.19	0.19	0.20	0.05	0.66	Covered[812]
YDL138W	RGT2	"Plasma membrane glucose receptor, highly similar to Snf3p; both Rgt2p and Snf3p serve as transmembrane glucose sensors generating an intracellular signal that induces expression of glucose transporter (HXT) genes"	Verified	chr4:213352-215643	213352-215643	98.8%	71.54	80.81	54.76	38.42	59.61	59.61	76.17	46.59	59.61	0.28	0.19	0.25	0.36	1.05	Matched[813]
YDL137W	ARF2	"ADP-ribosylation factor, GTPase of the Ras superfamily involved in regulation of coated formation vesicles in intracellular trafficking within the Golgi; functionally interchangeable with Arf1p"	Verified	chr4:216157-217074	216157-216158,216490-217074	80.2%	2642.59	2597.98	2653.21	2547.00	3602.76	2215.61	2620.29	2600.11	2909.19	9.67	10.55	12.05	0.16	-1.93	Frag>80[814,815]
YDL136W	RPL35B	"Protein component of the large (60S) ribosomal subunit, identical to Rpl35Ap and has similarity to rat L35 ribosomal protein"	Verified	chr4:217600-218367	217600-217602,218008-218367	10.5%	2434.02	1465.65	1387.13	1046.89	444.93	183.21	1949.84	1217.01	314.07	7.20	4.94	1.30	-1.95	-2.17	Frag<80[816,817]
YDL135C	RDI1	Rho GDP dissociation inhibitor involved in the localization and regulation of Cdc42p	Verified	chr4:218680-219288	218680-219288	99.5%	369.76	425.89	430.84	368.11	614.07	343.35	397.83	399.48	478.71	1.47	1.62	1.98	0.26	-0.26	Matched[818]
YDL134C	PPH21	"Catalytic subunit of protein phosphatase 2A, functionally redundant with Pph22p; methylated at C terminus; forms alternate complexes with several regulatory subunits; involved in signal transduction and regulation of mitosis"	Verified	chr4:219662-220771	219662-220771	66.9%	577.49	584.22	512.87	526.33	660.95	368.84	580.85	519.60	514.89	2.14	2.11	2.13	-0.01	0.08	Frag>80[819,820]
YDL133C-A	RPL41B	"Ribosomal protein L47 of the large (60S) ribosomal subunit, identical to Rpl41Ap and has similarity to rat L41 ribosomal protein; comprised of only 25 amino acids; rpl41a rpl41b double null mutant is viable"	Verified	chr4:221724-221801	221724-221801	38.0%	11341.77	9282.70	7864.98	7696.20	8438.82	7291.14	10312.24	7780.59	7864.98	38.07	31.58	32.59	0.02	-1.63	Matched[821]
YDL133W		Putative protein of unknown function	Uncharacterized	chr4:222427-223740	222427-223740	98.8%	130.95	150.97	143.27	146.35	174.08	124.78	140.96	144.81	149.43	0.52	0.59	0.62	0.05	0.02	Matched[822]
YDL132W	CDC53	"Cullin, structural protein of SCF complexes (which also contain Skp1p, Cdc34p, Hrt1p and an F-box protein) involved in ubiquitination; SCF promotes the G1-S transition by targeting G1 cyclins and the Cln-CDK inhibitor Sic1p for degradation"	Verified	chr4:224304-226751	224304-226751	98.8%	224.59	217.15	221.28	208.88	308.56	230.38	220.87	215.08	269.47	0.82	0.87	1.12	0.33	0.56	Frag>80[823,824]
YDL131W	LYS21	"Homocitrate synthase isozyme, catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, which is the first step in the lysine biosynthesis pathway; highly similar to the other isozyme, Lys20p"	Verified	chr4:227393-228715	227393-228715	40.9%	411.95	672.41	380.54	288.18	133.00	103.45	542.18	334.36	118.23	2.00	1.36	0.49	-1.50	-0.98	Frag<80[825,826,827,828]
YDL130W-A	STF1	Protein involved in regulation of the mitochondrial F1F0-ATP synthase; Stf1p and Stf2p act as stabilizing factors that enhance inhibitory action of the Inh1p protein	Verified	chr4:229171-229431	229171-229431	98.5%	711.60	1287.10	1166.56	1267.66	4382.37	2340.89	999.35	1217.11	3361.63	3.69	4.94	13.93	1.47	0.99	Matched[829]
YDL130W	RPP1B	"Ribosomal protein P1 beta, component of the ribosomal stalk, which is involved in interaction of translational elongation factors with ribosome; accumulation is regulated by phosphorylation and interaction with the P2 stalk component"	Verified	chr4:229906-230527	229906-230019,230321-230527	90.1%	8181.03	7084.46	7745.17	6216.20	2763.91	1916.40	7632.75	6980.69	2340.16	28.18	28.34	9.70	-1.58	-2.48	Matched[830]
YDL129W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and the nucleus; YDL129W is not an essential gene	Uncharacterized	chr4:231024-231899	231024-231899	98.4%	37.14	38.30	32.49	33.65	27.85	16.25	37.72	33.07	22.05	0.14	0.13	0.09	-0.58	-0.31	Matched[831]
YDL128W	VCX1	"Vacuolar H+/Ca2+ exchanger involved in control of cytosolic Ca2+ concentration; has similarity to sodium/calcium exchangers, including the bovine Na+/Ca2+,K+ antiporter"	Verified	chr4:232652-233887	232652-233887	98.9%	478.59	413.96	415.60	404.15	373.88	249.52	446.28	409.87	311.70	1.65	1.66	1.29	-0.40	-0.12	Matched[832]
YDL127W	PCL2	"G1 cyclin, associates with Pho85p cyclin-dependent kinase (Cdk) to contribute to entry into the mitotic cell cycle, essential for cell morphogenesis; localizes to sites of polarized cell growth"	Verified	chr4:234927-235853	234927-235853	99.1%	109.97	138.28	103.44	91.46	84.93	43.55	124.13	97.45	64.24	0.46	0.40	0.27	-0.60	-0.95	Matched[833]
YDL126C	CDC48	"ATPase in ER, nuclear membrane and cytosol with homology to mammalian p97; in a complex with Npl4p and Ufd1p participates in retrotranslocation of ubiquitinated proteins from the ER into the cytosol for degradation by the proteasome"	Verified	chr4:236157-238664	236157-238664	99.0%	1187.03	952.69	1181.40	1182.61	1495.87	1300.18	1069.86	1182.00	1398.03	3.95	4.80	5.79	0.24	0.24	Frag>80[834,835,836]
YDL125C	HNT1	"Adenosine 5'-monophosphoramidase; interacts physically and genetically with Kin28p, a CDK and TFIIK subunit, and genetically with CAK1; member of the histidine triad (HIT) superfamily of nucleotide-binding proteins and similar to Hint"	Verified	chr4:239019-239606	239019-239398,239510-239606	98.7%	1101.91	1176.22	1053.08	944.80	2070.06	934.18	1139.07	998.94	1502.12	4.20	4.05	6.22	0.59	-0.00	Frag>80[836,837,838]
YDL124W		"NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family"	Verified	chr4:240259-241197	240259-241197	98.7%	862.31	1414.88	1087.87	1014.48	5240.76	3809.70	1138.59	1051.17	4525.23	4.20	4.27	18.75	2.11	1.67	Matched[839]
YDL123W	SNA4	"Protein of unknown function, localized to the vacuolar outer membrane"	Verified	chr4:241418-241840	241418-241840	98.9%	181.67	241.43	224.70	162.55	260.56	169.72	211.55	193.63	215.14	0.78	0.79	0.89	0.15	0.42	Covered/w/another[840]
YDL122W	UBP1	Ubiquitin-specific protease that removes ubiquitin from ubiquitinated proteins; cleaves at the C terminus of ubiquitin fusions irrespective of their size; capable of cleaving polyubiquitin chains	Verified	chr4:242552-244981	242552-244981	98.6%	267.45	198.61	251.18	207.37	94.71	84.28	233.03	229.28	89.50	0.86	0.93	0.37	-1.36	-0.75	Covered/w/another[840]
YDL121C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic retiuculum; YDL121C is not an essential protein	Uncharacterized	chr4:245133-245582	245133-245582	99.2%	367.54	266.69	340.65	304.79	40.34	20.17	317.12	322.72	30.25	1.17	1.31	0.13	-3.42	-3.35	Covered/w/another[840]
YDL120W	YFH1	"Frataxin, regulates mitochondrial iron accumulation; interacts with Isu1p which promotes Fe-S cluster assembly; interacts with electron transport chain components and may influence respiration; human homolog involved in Friedrich's ataxia"	Verified	chr4:245923-246447	245923-246447	98.7%	308.93	426.71	349.48	256.80	283.83	202.74	367.82	303.14	243.28	1.36	1.23	1.01	-0.32	-0.29	Matched[841]
YDL118W		"Non-essential protein of unconfirmed function; mutants are defective in telomere maintenance, and are synthetically sick or lethal with alpha-synuclein"	Uncharacterized	chr4:247302-247682	247302-247682	99.2%	50.29	50.29	87.34	74.11	145.57	82.05	50.29	80.72	113.81	0.19	0.33	0.47	0.50	0.17	Covered/w/another[842]
YDL119C		"Putative mitochondrial transport protein; GFP-fusion protein is induced in response to the DNA-damaging agent MMS; the authentic, non-tagged protein is detected in purified mitochondria"	Uncharacterized	chr4:246689-247612	246689-247612	99.1%	81.94	86.31	79.76	63.37	198.84	100.51	84.13	71.56	149.68	0.31	0.29	0.62	1.06	0.49	Matched[842]
YDL117W	CYK3	SH3-domain protein located in the mother-bud neck and the cytokinetic actin ring; mutant phenotype and genetic interactions suggest a role in cytokinesis	Verified	chr4:248581-251238	248581-251238	98.8%	119.22	97.89	105.88	84.17	96.36	76.56	108.55	95.03	86.46	0.40	0.39	0.36	-0.14	0.60	Matched[843]
YDL116W	NUP84	"Subunit of the nuclear pore complex (NPC), forms a subcomplex with Nup85p, Nup120p, Nup145p-C, Sec13p, and Seh1p that plays a role in nuclear mRNA export and NPC biogenesis"	Verified	chr4:251566-253746	251566-253746	98.9%	173.45	153.97	140.52	145.16	121.04	93.68	163.71	142.84	107.36	0.60	0.58	0.44	-0.41	0.14	Matched[844]
YDL114W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; identified based on homology to hemiascomycetous yeasts"	Dubious	chr4:254935-255048	254935-255048	99.6%	35.23	26.42	35.23	70.46	88.07	70.46	30.83	52.84	79.27	0.11	0.21	0.33	0.58	0.06	Matched[846]
YDL115C	IWR1	"Protein of unknown function, deletion causes hypersensitivity to the K1 killer toxin"	Verified	chr4:253995-255126	253995-254974,255045-255126	99.4%	168.61	166.72	140.20	147.77	359.01	197.03	167.67	143.98	278.02	0.62	0.58	1.15	0.95	0.53	Frag>80[845,846]
YDL114W		Putative protein of unknown function with similarity to acyl-carrier-protein reductases; YDL114W is not an essential gene	Uncharacterized	chr4:255604-256530	255604-256530	99.0%	2.18	4.36	0.00	1.09	8.72	1.09	3.27	0.54	4.90	0.01	0.00	0.02	3.17	1.39	Frag<80[847]
YDL113C	ATG20	"Protein required for transport of aminopeptidase I (Lap4p) through the cytoplasm-to-vacuole targeting pathway; binds phosphatidylinositol-3-phosphate, involved in localization of membranes to the preautophagosome, potential Cdc28p substrate"	Verified	chr4:256633-258555	256633-258555	99.3%	88.49	107.34	108.38	99.48	205.77	152.37	97.91	103.93	179.07	0.36	0.42	0.74	0.78	1.07	Frag>80[847,848]
YDL112W	TRM3	"2'-O-ribose methyltransferase, catalyzes the ribose methylation of the guanosine nucleotide at position 18 of tRNAs"	Verified	chr4:258915-263225	258915-263225	98.9%	132.25	80.43	94.26	82.54	16.41	10.55	106.34	88.40	13.48	0.39	0.36	0.06	-2.71	-2.01	Matched[849]
YDL111C	RRP42	"Protein involved in rRNA processing; component of the exosome 3->5 exonuclease complex with Rrp4p, Rrp41p, Rrp43p and Dis3p"	Verified	chr4:263313-264110	263313-264110	98.9%	226.86	178.70	204.04	179.97	191.37	128.00	202.78	192.01	159.69	0.75	0.78	0.66	-0.27	-0.23	Matched[850]
YDL110C	TMA17	Protein of unknown function that associates with ribosomes	Verified	chr4:264512-264964	264512-264964	99.3%	473.33	973.33	951.11	946.67	3891.11	2660.00	723.33	948.89	3275.56	2.67	3.85	13.57	1.79	1.17	Matched[851]
YDL109C		Putative lipase; involved in lipid metabolism; YDL109C is not an essential gene	Uncharacterized	chr4:265258-267201	265258-267201	98.9%	31.71	48.35	34.83	22.36	46.79	45.23	40.03	28.59	46.01	0.15	0.12	0.19	0.69	1.20	Matched[852]
YDL108W	KIN28	"Serine/threonine protein kinase, subunit of the transcription factor TFIIH; involved in transcription initiation at RNA polymerase II promoters"	Verified	chr4:267698-268699	267698-267725,267807-268699	98.8%	104.42	109.92	82.44	84.63	116.51	56.06	107.17	83.54	86.28	0.40	0.34	0.36	0.05	0.15	Covered/w/another[853]
YDL107W	MSS2	"Peripherally bound inner membrane protein of the mitochondrial matrix, binds to the Cox2p C-terminal tail to facilitate its translocation through the inner membrane"	Verified	chr4:268921-269976	268921-269976	98.7%	80.56	95.90	82.48	70.97	124.68	77.68	88.23	76.72	101.18	0.33	0.31	0.42	0.40	0.41	Covered/w/another[853]
YDL106C	PHO2	Homeobox transcription factor; regulatory targets include genes involved in phosphate metabolism; binds cooperatively with Pho4p to the PHO5 promoter; phosphorylation of Pho2p facilitates interaction with Pho4p	Verified	chr4:270222-271901	270222-271901	99.2%	103.17	117.57	100.77	103.17	164.95	110.97	110.37	101.97	137.96	0.41	0.41	0.57	0.44	0.84	Covered/w/another[853]
YDL105W	NSE4	Nuclear protein that plays a role in the function of the Smc5p-Rhc18p complex	Verified	chr4:272389-273597	272389-273597	98.6%	80.55	67.96	55.38	52.86	41.11	32.72	74.26	54.12	36.92	0.27	0.22	0.15	-0.55	-0.21	Covered/w/another[854]
YDL104C	QRI7	"Putative metalloprotease, similar to O-sialoglycoprotein metallopeptidase from P. haemolytica; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr4:273653-274876	273653-274876	99.2%	63.39	63.39	52.68	55.98	62.56	32.10	63.39	54.33	47.33	0.23	0.22	0.20	-0.20	-0.47	Covered/w/another[854]
YDL103C	QRI1	"UDP-N-acetylglucosamine pyrophosphorylase, catalyzes the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), which is important in cell wall biosynthesis, protein N-glycosylation, and GPI anchor biosynthesis"	Verified	chr4:275148-276581	275148-276581	99.2%	264.39	238.37	271.42	255.24	293.21	207.43	251.38	263.33	250.32	0.93	1.07	1.04	-0.07	0.28	Matched[855]
YDL102W	POL3	"Catalytic subunit of DNA polymerase delta; required for chromosomal DNA replication during mitosis and meiosis, intragenic recombination, repair of double strand DNA breaks, and DNA replication during nucleotide excision repair (NER)"	Verified	chr4:276872-280165	276872-280165	98.9%	80.15	52.82	69.09	51.90	30.09	24.26	66.48	60.49	27.18	0.25	0.25	0.11	-1.15	-0.61	Matched[856]
YDL101C	DUN1	"Cell-cycle checkpoint serine-threonine kinase required for DNA damage-induced transcription of certain target genes, phosphorylation of Rad55p and Sml1p, and transient G2/M arrest after DNA damage; also regulates postreplicative DNA repair"	Verified	chr4:280307-281848	280307-281848	99.2%	110.50	102.66	119.00	98.73	181.12	139.27	106.58	108.87	160.20	0.39	0.44	0.66	0.56	0.48	Matched[857]
YDL100C	GET3	"ATPase, subunit of the GET complex; required for the retrieval of HDEL proteins from the Golgi to the ER in an ERD2 dependent fashion; involved in resistance to heat and metal stress"	Verified	chr4:282112-283176	282112-283176	99.1%	937.44	814.22	836.97	802.84	1123.22	752.61	875.83	819.91	937.91	3.23	3.33	3.89	0.19	0.39	Matched[858]
YDL099W	BUG1	"Cis-golgi localized protein involved in ER to Golgi transport; forms a complex with the mammalian GRASP65 homolog, Grh1p; mutants are compromised for the fusion of ER-derived vesicles with Golgi membranes"	Verified	chr4:283419-284444	283419-284444	98.2%	416.02	412.05	353.47	353.47	552.04	395.17	414.03	353.47	473.61	1.53	1.43	1.96	0.42	0.46	Frag>80[859,860]
YDL098C	SNU23	Component of U4/U6.U5 snRNP involved in mRNA splicing via spliceosome	Verified	chr4:284581-285165	284581-285165	99.5%	63.57	61.86	72.16	54.98	96.22	58.42	62.71	63.57	77.32	0.23	0.26	0.32	0.28	0.11	Matched[860]
YDL097C	RPN6	"Essential, non-ATPase regulatory subunit of the 26S proteasome lid required for the assembly and activity of the 26S proteasome; the human homolog (S9 protein) partially rescues Rpn6p depletion"	Verified	chr4:285391-286695	285391-286695	99.1%	518.73	455.34	565.89	494.77	902.17	650.93	487.03	530.33	776.55	1.80	2.15	3.22	0.55	0.86	Frag>80[861,862]
YDL095W	PMT1	"Protein O-mannosyltransferase, transfers mannose residues from dolichyl phosphate-D-mannose to protein serine/threonine residues; acts in a complex with Pmt2p, can instead interact with Pmt3p in some conditions; target for new antifungals"	Verified	chr4:287059-289512	287059-289512	98.9%	685.46	583.71	655.80	596.89	515.74	551.58	634.58	626.34	533.66	2.34	2.54	2.21	-0.23	0.21	Matched[863]
YDL096C	OPI6	"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified gene PMT1/YDL095W; YDL096C is not essential"	Dubious	chr4:286998-287324	286998-287324	98.4%	276.68	251.81	313.99	279.79	152.33	307.77	264.25	296.89	230.05	0.98	1.21	0.95	-0.37	-0.12	Covered/w/another[863]
YDL093W	PMT5	"Protein O-mannosyltransferase, transfers mannose residues from dolichyl phosphate-D-mannose to protein serine/threonine residues; acts in a complex with Pmt3p, can instead interact with Pmt2p in some conditions; target for new antifungals"	Verified	chr4:289909-292140	289909-292140	99.0%	104.55	130.34	104.09	102.74	55.22	50.69	117.45	103.42	52.95	0.43	0.42	0.22	-0.97	-0.44	Matched[864]
YDL094C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verfied gene PMT5/YDL093W; YDL094C is not essential"	Dubious	chr4:289572-290081	289572-290081	99.1%	73.23	71.25	39.58	65.31	49.48	47.50	72.24	52.44	48.49	0.27	0.21	0.20	-0.11	0.23	Covered/w/another[864]
YDL092W	SRP14	"Signal recognition particle (SRP) subunit, interacts with the RNA component of SRP to form the Alu domain, which is the region of SRP responsible for arrest of nascent chain elongation during membrane targeting; homolog of mammalian SRP14"	Verified	chr4:292781-293221	292781-293221	98.4%	566.66	497.55	573.57	486.04	490.64	304.06	532.10	529.80	397.35	1.96	2.15	1.65	-0.42	-0.52	Matched[865]
YDL091C	UBX3	"UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p, green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern"	Verified	chr4:293392-294759	293392-294759	99.2%	111.97	151.75	134.81	140.70	166.49	119.34	131.86	137.76	142.91	0.49	0.56	0.59	0.05	0.47	Matched[866]
YDL090C	RAM1	Beta subunit of the CAAX farnesyltransferase (FTase) that prenylates the a-factor mating pheromone and Ras proteins; required for the membrane localization of Ras proteins and a-factor; homolog of the mammalian FTase beta subunit	Verified	chr4:295034-296329	295034-296329	99.2%	113.61	115.16	137.73	116.72	164.96	124.50	114.39	127.22	144.73	0.42	0.52	0.60	0.19	0.63	Matched[867]
YDL089W		"Protein of unknown function; interacts with meiotic division protein Csm1p; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery, potential Cdc28p substrate"	Uncharacterized	chr4:296820-298274	296820-298274	99.0%	119.42	138.17	140.25	143.73	180.52	126.37	128.80	141.99	153.45	0.48	0.58	0.64	0.11	0.42	Matched[868]
YDL088C	ASM4	"Nuclear pore complex subunit, part of a subcomplex also containing Nup53p, Nup170p, and Pse1p"	Verified	chr4:298417-300003	298417-300003	99.1%	170.39	203.45	170.39	162.12	195.18	169.12	186.92	166.26	182.15	0.69	0.67	0.75	0.13	0.68	
YDL087C	LUC7	Essential protein associated with the U1 snRNP complex; splicing factor involved in recognition of 5' splice site; contains two zinc finger motifs; N-terminal zinc finger binds pre-mRNA	Verified	chr4:300214-300999	300214-300999	99.0%	52.70	71.98	66.84	65.55	62.98	82.26	62.34	66.20	72.62	0.23	0.27	0.30	0.13	0.79	Covered[869]
YDL086W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YDL086W is not an essential gene"	Uncharacterized	chr4:301413-302234	301413-302234	98.6%	671.50	913.44	585.09	622.13	790.00	690.02	792.47	603.61	740.01	2.93	2.45	3.07	0.29	0.43	Matched[870]
YDL086C-A		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps uncharacterized ORF YDL086W; identified by gene-trapping, microarray expression analysis, and genome-wide homology searching"	Dubious	chr4:301655-302089	301655-302089	98.3%	767.25	1003.51	624.56	697.08	823.39	797.66	885.38	660.82	810.53	3.27	2.68	3.36	0.29	NaN	Matched[870]
YDL085C-A		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus	Uncharacterized	chr4:302464-302670	302464-302670	99.6%	553.06	625.83	494.85	509.40	635.54	480.29	589.45	502.12	557.91	2.18	2.04	2.31	0.15	-0.27	Matched[871]
YDL085W	NDE2	"Mitochondrial external NADH dehydrogenase, catalyzes the oxidation of cytosolic NADH; Nde1p and Nde2p are involved in providing the cytosolic NADH to the mitochondrial respiratory chain"	Verified	chr4:303211-304848	303211-304848	98.6%	11.14	22.29	13.00	11.76	138.06	102.15	16.72	12.38	120.10	0.06	0.05	0.50	3.28	3.33	Matched[872]
YDL084W	SUB2	Component of the TREX complex required for nuclear mRNA export; member of the DEAD-box RNA helicase superfamily and is involved in early and late steps of spliceosome assembly; homolog of the human splicing factor hUAP56	Verified	chr4:305237-306577	305237-306577	98.8%	2385.89	1910.52	2149.72	2087.84	1288.77	1067.69	2148.21	2118.78	1178.23	7.93	8.60	4.88	-0.85	-0.74	Matched[873]
YDL083C	RPS16B	Protein component of the small (40S) ribosomal subunit; identical to Rps16Ap and has similarity to E. coli S9 and rat S16 ribosomal proteins	Verified	chr4:306926-307789	306926-307333,307766-307789	78.3%	7051.00	5824.09	6415.37	5487.07	946.05	629.71	6437.55	5951.22	787.88	23.76	24.16	3.26	-2.92	-4.12	Matched[875]
YDL082W	RPL13A	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl13Bp; not essential for viability; has similarity to rat L13 ribosomal protein"	Verified	chr4:308424-309388	308424-308427,308793-309388	65.3%	4665.74	3754.55	3655.00	3134.32	594.70	201.64	4210.15	3394.66	398.17	15.54	13.78	1.65	-3.09	-3.58	Matched[876]
YDL081C	RPP1A	"Ribosomal stalk protein P1 alpha, involved in the interaction between translational elongation factors and the ribosome; accumulation of P1 in the cytoplasm is regulated by phosphorylation and interaction with the P2 stalk component"	Verified	chr4:309802-310122	309802-310122	96.8%	12476.27	10294.45	11462.59	9769.91	5216.41	4456.96	11385.36	10616.25	4836.69	42.03	43.09	20.04	-1.13	-2.10	Matched[877]
YDL080C	THI3	"Probable alpha-ketoisocaproate decarboxylase, may have a role in catabolism of amino acids to long-chain and complex alcohols; required for expression of enzymes involved in thiamine biosynthesis"	Verified	chr4:310642-312471	310642-312471	99.0%	152.88	168.89	112.59	92.72	70.65	52.43	160.88	102.66	61.54	0.59	0.42	0.25	-0.74	-0.46	Covered/w/another[878]
YDL079C	MRK1	Glycogen synthase kinase 3 (GSK-3) homolog; one of four GSK-3 homologs in S. cerevisiae that function to activate Msn2p-dependent transcription of stress responsive genes and that function in protein degradation	Verified	chr4:312951-314748	312951-314044,314337-314748	99.2%	66.26	92.36	86.34	97.72	208.15	129.17	79.31	92.03	168.66	0.29	0.37	0.70	0.87	0.99	Covered/w/another[878]
YDL078C	MDH3	"Cytoplasmic malate dehydrogenase, catalyzes interconversion of malate and oxaloacetate; involved in the glyoxylate cycle"	Verified	chr4:315357-316388	315357-316388	99.0%	751.62	731.07	724.22	715.41	794.68	596.01	741.34	719.81	695.35	2.74	2.92	2.88	-0.05	-0.13	Frag>80[879,880]
YDL077C	VAM6	Vacuolar protein that plays a critical role in the tethering steps of vacuolar membrane fusion by facilitating guanine nucleotide exchange on small guanosine triphosphatase Ypt7p	Verified	chr4:316971-320120	316971-320120	99.2%	73.89	74.21	63.98	66.22	80.61	73.89	74.05	65.10	77.25	0.27	0.26	0.32	0.25	0.90	Matched[881]
YDL076C	RXT3	Subunit of the RPD3L complex; involved in histone deacetylation	Verified	chr4:320668-321552	320668-321552	99.1%	223.54	239.51	280.57	247.49	304.52	221.26	231.53	264.03	262.89	0.85	1.07	1.09	-0.01	0.27	Matched[882]
YDL075W	RPL31A	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl31Bp and has similarity to rat L31 ribosomal protein; associates with the karyopherin Sxm1p"	Verified	chr4:322226-322988	322226-322282,322704-322988	80.0%	10014.62	8051.19	8731.26	7524.68	2650.82	2354.66	9032.91	8127.97	2502.74	33.34	32.99	10.37	-1.70	-3.05	Matched[883]
YDL074C	BRE1	"E3 ubiquitin ligase for Rad6p, required for the ubiquitination of histone H2B, recruitment of Rad6p to promoter chromatin and subsequent methylation of histone H3 (on K4 and K79), contains RING finger domain"	Verified	chr4:324047-326149	324047-326149	99.4%	285.02	253.94	212.33	178.38	151.12	87.51	269.48	195.35	119.32	0.99	0.79	0.49	-0.71	-0.53	Frag>80[885,886]
YDL073W		Putative protein of unknown function; YDL073W is not an essential gene	Uncharacterized	chr4:326613-329567	326613-329567	98.9%	115.29	104.68	84.84	94.08	47.89	42.08	109.99	89.46	44.99	0.41	0.36	0.19	-0.99	-0.45	Matched[887]
YDL072C	YET3	Protein of unknown function; YET3 null mutant decreases the level of secreted invertase; homolog of human BAP31 protein	Verified	chr4:329836-330447	329836-330447	98.7%	787.81	902.01	786.15	910.28	2044.00	1431.63	844.91	848.22	1737.81	3.12	3.44	7.20	1.03	0.70	Frag>80[888,889]
YDL070W	BDF2	Protein involved in transcription initiation at TATA-containing promoters; associates with the basal transcription factor TFIID; contains two bromodomains; corresponds to the C-terminal region of mammalian TAF1; redundant with Bdf1p	Verified	chr4:331025-332941	331025-332941	98.7%	904.91	796.62	724.78	566.83	803.49	560.49	850.77	645.80	681.99	3.14	2.62	2.83	0.08	-0.22	Matched[890]
YDL071C		Hypothetical protein	Dubious	chr4:330667-331041	330667-331041	98.0%	65.28	68.00	51.68	43.52	27.20	48.96	66.64	47.60	38.08	0.25	0.19	0.16	-0.32	1.36	Covered/w/another[890]
YDL068W		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr4:333500-333829	333500-333829	99.5%	73.09	82.22	82.22	70.04	94.40	51.77	77.66	76.13	73.09	0.29	0.31	0.30	-0.06	-0.11	Matched[891]
YDL069C	CBS1	"Mitochondrial translational activator of the COB mRNA; membrane protein that interacts with translating ribosomes, acts on the COB mRNA 5'-untranslated leader"	Verified	chr4:333121-333810	333121-333810	99.4%	93.28	112.22	94.73	87.45	122.43	77.25	102.75	91.09	99.84	0.38	0.37	0.41	0.13	-0.10	Frag<80[891,892]
YDL067C	COX9	"Subunit VIIa of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain"	Verified	chr4:334217-334396	334217-334396	98.6%	940.62	1064.54	1103.97	1160.29	1565.83	895.56	1002.58	1132.13	1230.70	3.70	4.60	5.10	0.12	-0.58	Matched[892]
YDL066W	IDP1	"Mitochondrial NADP-specific isocitrate dehydrogenase, catalyzes the oxidation of isocitrate to alpha-ketoglutarate; not required for mitochondrial respiration and may function to divert alpha-ketoglutarate to biosynthetic processes"	Verified	chr4:334835-336121	334835-336121	98.7%	809.00	1375.61	838.90	1002.59	613.83	784.60	1092.30	920.75	699.22	4.03	3.74	2.90	-0.40	0.12	Matched[893]
YDL065C	PEX19	"Chaperone and import receptor for newly-synthesized class I peroxisomal membrane proteins (PMPs), binds PMPs in the cytoplasm and delivers them to the peroxisome for subsequent insertion into the peroxisomal membrane"	Verified	chr4:336249-337277	336249-337277	99.6%	341.34	298.43	294.53	285.75	364.74	250.64	319.88	290.14	307.69	1.18	1.18	1.27	0.08	0.08	Matched[894]
YDL064W	UBC9	SUMO-conjugating enzyme involved in the Smt3p conjugation pathway; nuclear protein required for S- and M-phase cyclin degradation and mitotic control; involved in proteolysis mediated by the anaphase-promoting complex cyclosome (APCC)	Verified	chr4:337487-338070	337487-337524,337635-338070	98.6%	483.47	440.68	468.49	367.95	316.61	243.87	462.07	418.22	280.24	1.71	1.70	1.16	-0.58	-0.59	Matched[895]
YDL062W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized ORF YDL063C; YDL062W is not essential"	Dubious	chr4:339857-340282	339857-340282	98.9%	54.59	33.23	37.97	23.73	2.37	2.37	43.91	30.85	2.37	0.16	0.13	0.01	-3.70	-0.50	Covered/w/another[896]
YDL063C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YDL063C is not an essential gene	Uncharacterized	chr4:338272-340134	338272-340134	99.2%	121.74	62.22	72.50	46.53	8.66	2.71	91.98	59.52	5.68	0.34	0.24	0.02	-3.39	-3.06	Matched[896]
YDL061C	RPS29B	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps29Ap and has similarity to rat S29 and E. coli S14 ribosomal proteins	Verified	chr4:340628-341220	340628-340810,341219-341220	80.4%	8380.85	6707.37	7426.49	6075.61	1384.49	551.11	7544.10	6751.05	967.80	27.85	27.40	4.01	-2.80	-4.24	Matched[897]
YDL060W	TSR1	"Protein required for processing of 20S pre-rRNA in the cytoplasm, associates with pre-40S ribosomal particles"	Verified	chr4:341619-343985	341619-343985	98.6%	212.15	126.43	135.43	99.00	10.29	12.00	169.29	117.22	11.14	0.62	0.48	0.05	-3.39	-2.21	Matched[898]
YDL059C	RAD59	Protein involved in the repair of double-strand breaks in DNA during vegetative growth via recombination and single-strand annealing; anneals complementary single-stranded DNA; homologous to Rad52p	Verified	chr4:344237-344953	344237-344953	99.2%	82.92	116.65	81.52	77.30	163.04	101.19	99.79	79.41	132.12	0.37	0.32	0.55	0.73	0.54	Matched[899]
YDL058W	USO1	"Essential protein involved in intracellular protein transport, coiled-coil protein necessary for transport from ER to Golgi; required for assembly of the ER-to-Golgi SNARE complex"	Verified	chr4:345665-351037	345665-351037	98.5%	159.61	156.78	121.45	120.32	64.22	86.13	158.19	120.89	75.18	0.58	0.49	0.31	-0.69	-0.23	Matched[900]
YDL057W		Putative protein of unknown function; YDL057W is not an essential gene	Uncharacterized	chr4:351434-352420	351434-352420	98.8%	38.97	64.60	46.15	26.66	130.23	106.65	51.79	36.40	118.44	0.19	0.15	0.49	1.70	1.58	Covered/w/another[901]
YDL056W	MBP1	"Transcription factor involved in regulation of cell cycle progression from G1 to S phase, forms a complex with Swi6p that binds to MluI cell cycle box regulatory element in promoters of DNA synthesis genes"	Verified	chr4:352877-355378	352877-355378	98.8%	97.50	121.77	99.92	91.43	118.94	118.13	109.63	95.67	118.53	0.40	0.39	0.49	0.31	0.64	Covered/w/another[901]
YDL055C	PSA1	"GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase), synthesizes GDP-mannose from GTP and mannose-1-phosphate in cell wall biosynthesis; required for normal cell wall structure"	Verified	chr4:355674-356759	355674-356759	98.9%	8745.64	7299.98	7522.46	6574.82	2156.85	1731.44	8022.81	7048.64	1944.15	29.62	28.61	8.06	-1.86	-2.19	Frag>80[902,903,904]
YDL054C	MCH1	"Protein with similarity to mammalian monocarboxylate permeases, which are involved in transport of monocarboxylic acids across the plasma membrane; mutant is not deficient in monocarboxylate transport"	Verified	chr4:359825-361285	359825-361285	98.6%	120.15	149.32	119.46	102.10	125.01	85.43	134.74	110.78	105.22	0.50	0.45	0.44	-0.07	0.25	Matched[905]
YDL053C	PBP4	"Pbp1p binding protein, interacts strongly with Pab1p-binding protein 1 (Pbp1p) in the yeast two-hybrid system; also interacts with Lsm12p in a copurification assay"	Verified	chr4:361699-362256	361699-362256	98.8%	562.23	516.89	540.47	473.36	623.89	359.10	539.56	506.91	491.50	1.99	2.06	2.04	-0.04	-0.26	Matched[906]
YDL052C	SLC1	"1-acyl-sn-gylcerol-3-phosphate acyltransferase, catalyzes the acylation of lysophosphatidic acid to form phosphatidic acid, a key intermediate in lipid metabolism; located in lipid particles and endoplasmic reticulum"	Verified	chr4:362672-363583	362672-363583	98.9%	437.92	596.45	465.63	334.81	460.09	443.46	517.18	400.22	451.77	1.91	1.62	1.87	0.17	0.52	Matched[907]
YDL051W	LHP1	RNA binding protein required for maturation of tRNA and snRNA precursors; acts as a molecular chaperone for RNAs transcribed by polymerase III; homologous to human La (SS-B) autoantigen	Verified	chr4:363952-364779	363952-364779	98.5%	622.87	277.10	421.78	378.87	105.45	89.51	449.98	400.33	97.48	1.66	1.63	0.40	-2.04	-1.97	Matched[908]
YDL050C		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr4:364446-364817	364446-364817	98.6%	725.12	288.96	460.70	384.37	117.22	106.32	507.04	422.54	111.77	1.87	1.72	0.46	-1.92	-1.13	Matched[908]
YDL049C	KNH1	"Protein with similarity to Kre9p, which is involved in cell wall beta 1,6-glucan synthesis; overproduction suppresses growth defects of a kre9 null mutant"	Verified	chr4:365068-365874	365068-365874	99.1%	56.29	40.03	56.29	28.77	12.51	28.77	48.16	42.53	20.64	0.18	0.17	0.09	-1.04	-1.16	Covered/w/another[909]
YDL048C	STP4	"Protein containing a Kruppel-type zinc-finger domain; has similarity to Stp1p, Stp2p, and Stp3p"	Verified	chr4:366739-368211	366739-368211	98.4%	105.58	74.53	70.39	56.59	52.45	53.14	90.06	63.49	52.79	0.33	0.26	0.22	-0.27	0.25	Covered/w/another[909]
YDL047W	SIT4	Type 2A-related serine-threonine phosphatase that functions in the G1/S transition of the mitotic cycle; cytoplasmic and nuclear protein that modulates functions mediated by Pkc1p including cell wall and actin cytoskeleton organization	Verified	chr4:369769-370704	369769-370704	98.5%	356.95	337.42	372.14	289.68	334.16	237.60	347.18	330.91	285.88	1.28	1.34	1.18	-0.21	0.09	Matched[910]
YDL046W	NPC2	"Functional homolog of human NPC2/He1, which is a cholesterol-binding protein whose deficiency causes Niemann-Pick type C2 disease involving retention of cholesterol in lysosomes"	Verified	chr4:371237-371758	371237-371758	98.9%	997.66	1040.28	1214.63	1038.34	1768.67	1534.26	1018.97	1126.48	1651.46	3.76	4.57	6.84	0.55	0.98	Matched[911]
YDL045W-A	MRP10	Mitochondrial ribosomal protein of the small subunit	Verified	chr4:372245-372532	372245-372532	98.5%	525.03	535.60	539.13	570.84	680.08	387.61	530.32	554.98	533.84	1.96	2.25	2.21	-0.06	0.02	Matched[912]
YDL045C	FAD1	"Flavin adenine dinucleotide (FAD) synthetase, performs the second step in synthesis of FAD from riboflavin"	Verified	chr4:372685-373605	372685-373605	99.1%	158.82	153.34	150.05	134.72	197.15	131.43	156.08	142.39	164.29	0.58	0.58	0.68	0.21	0.13	Matched[913]
YDL044C	MTF2	Mitochondrial matrix protein that interacts with an N-terminal region of mitochondrial RNA polymerase (Rpo41p) and couples RNA processing and translation to transcription	Verified	chr4:373964-375286	373964-375286	99.4%	63.87	73.76	63.87	71.48	82.12	52.47	68.82	67.68	67.30	0.25	0.27	0.28	-0.01	0.22	Covered/w/another[914]
YDL043C	PRP11	"Subunit of the SF3a splicing factor complex, required for spliceosome assembly"	Verified	chr4:375677-376477	375677-376477	99.3%	142.00	128.18	118.13	85.45	54.04	75.40	135.09	101.79	64.72	0.50	0.41	0.27	-0.65	-0.24	Covered/w/another[914]
YDL041W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene SIR2/YDL042C"	Dubious	chr4:378099-378452	378099-378452	99.0%	68.51	39.96	77.07	71.36	17.13	28.54	54.23	74.22	22.84	0.20	0.30	0.09	-1.70	-0.43	Covered/w/another[914]
YDL042C	SIR2	"Conserved NAD+ dependent histone deacetylase of the Sirtuin family involved in regulation of lifespan;  plays roles in silencing at HML, HMR, telomeres, and the rDNA locus; negatively regulates initiation of DNA replication"	Verified	chr4:376754-378442	376754-378442	99.0%	99.27	82.53	102.86	80.14	39.47	38.87	90.90	91.50	39.17	0.34	0.37	0.16	-1.22	-0.47	Covered/w/another[914]
YDL040C	NAT1	"Subunit of the N-terminal acetyltransferase NatA (Nat1p, Ard1p, Nat5p); N-terminally acetylates many proteins, which influences multiple processes such as the cell cycle, heat-shock resistance, mating, sporulation, and telomeric silencing"	Verified	chr4:378871-381435	378871-381435	99.1%	493.34	383.18	437.47	432.75	214.80	218.34	438.26	435.11	216.57	1.62	1.77	0.90	-1.01	-0.49	Matched[915]
YDL039C	PRM7	"Pheromone-regulated protein, predicted to have one transmembrane segment; promoter contains Gcn4p binding elements"	Verified	chr4:381983-382330	381983-382330	98.6%	26.23	14.57	17.49	14.57	5.83	17.49	20.40	16.03	11.66	0.08	0.07	0.05	-0.46	0.00	
YDL038C		Putative protein of unknown function; deletion confers sensitivity to 4-(N-(S-glutathionylacetyl)amino) phenylarsenoxide (GSAO)	Uncharacterized	chr4:382327-384078	382327-384078	83.3%	30.16	8.23	7.54	8.91	2.74	5.48	19.20	8.23	4.11	0.07	0.03	0.02	-1.00	0.23	
YDL037C	BSC1	"Protein of unconfirmed function, similar to cell surface flocculin Muc1p; ORF exhibits genomic organization compatible with a translational readthrough-dependent mode of expression"	Verified	chr4:384598-385584	384598-385584	76.1%	21.31	7.99	14.65	7.99	2.66	6.66	14.65	11.32	4.66	0.05	0.05	0.02	-1.28	-0.17	Frag<80[917]
YDL036C	PUS9	Mitochondrial tRNA pseudouridine synthase involved in pseudouridylation of mitochondrial tRNAs at position 32	Verified	chr4:387510-388898	387510-388898	99.3%	87.03	81.95	53.67	67.45	41.34	33.36	84.49	60.56	37.35	0.31	0.25	0.15	-0.70	-0.30	Matched[918]
YDL034W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps with verified gene GPR1/YDL035C; YDL034W is not an essential gene"	Dubious	chr4:391780-392124	391780-392124	98.6%	58.81	55.87	47.05	70.57	61.75	97.04	57.34	58.81	79.39	0.21	0.24	0.33	0.43	0.61	Covered[920]
YDL035C	GPR1	"Plasma membrane G protein coupled receptor (GPCR) that interacts with the heterotrimeric G protein alpha subunit, Gpa2p, and with Plc1p; sensor that integrates nutritional signals with the modulation of cell fate via PKA and cAMP synthesis"	Verified	chr4:389169-392054	389169-392054	96.7%	155.11	159.77	150.09	147.23	202.04	193.80	157.44	148.66	197.92	0.58	0.60	0.82	0.41	1.10	Frag<80[919]
YDL032W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified gene SLM3/YDL033C; YDL032W is not an essential gene"	Dubious	chr4:393687-393998	393687-393998	99.2%	35.53	35.53	19.38	12.92	16.15	16.15	35.53	16.15	16.15	0.13	0.07	0.07	0.00	1.87	
YDL033C	SLM3	"tRNA-specific 2-thiouridylase, responsible for 2-thiolation of the wobble base of mitochondrial tRNAs; human ortholog is implicated in myoclonus epilepsy associated with ragged red fibers (MERRF)"	Verified	chr4:392656-393909	392656-393909	98.8%	50.84	71.82	40.35	37.12	41.96	25.01	61.33	38.73	33.49	0.23	0.16	0.14	-0.21	0.18	Overlap[920]
YDL031W	DBP10	"Putative ATP-dependent RNA helicase of the DEAD-box protein family, constituent of 66S pre-ribosomal particles; essential protein involved in ribosome biogenesis"	Verified	chr4:394214-397201	394214-397201	98.5%	268.09	135.24	166.84	139.31	24.80	17.67	201.66	153.08	21.24	0.74	0.62	0.09	-2.85	-2.83	Matched[921]
YDL030W	PRP9	"Subunit of the SF3a splicing factor complex, required for spliceosome assembly; acts after the formation of the U1 snRNP-pre-mRNA complex"	Verified	chr4:397534-399126	397534-399126	98.5%	78.99	71.98	51.60	56.06	63.07	31.21	75.49	53.83	47.14	0.28	0.22	0.20	-0.19	0.01	Matched[922]
YDL029W	ARP2	"Essential component of the Arp2/3 complex, which is a highly conserved actin nucleation center required for the motility and integrity of actin patches; involved in endocytosis and membrane growth and polarity"	Verified	chr4:399337-400635	399337-399358,399482-400635	98.7%	883.82	972.54	963.07	951.01	1059.55	987.19	928.18	957.04	1023.37	3.43	3.88	4.24	0.10	0.42	Frag>80[923,924]
YDL028C	MPS1	"Dual-specificity kinase required for spindle pole body (SPB) duplication and spindle checkpoint function; substrates include SPB proteins Spc42p, Spc110p, and Spc98p, mitotic exit network protein Mob1p, and checkpoint protein Mad1p"	Verified	chr4:400994-403288	400994-403288	99.2%	92.20	93.96	69.81	76.84	89.13	90.89	93.08	73.32	90.01	0.34	0.30	0.37	0.30	0.72	Matched[925]
YDL026W		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr4:404746-405057	404746-405057	99.0%	87.43	158.66	132.76	174.85	362.66	200.76	123.04	153.80	281.71	0.45	0.62	1.17	0.87	1.15	Covered/w/another[926]
YDL027C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YDL027C is not an essential gene"	Uncharacterized	chr4:403692-404954	403692-404954	99.0%	186.25	250.20	227.82	270.98	512.39	280.58	218.23	249.40	396.48	0.81	1.01	1.64	0.67	0.58	Covered/w/another[926]
YDL025W-A		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the ORF YDL025C; identified by gene-trapping, microarray expression analysis, and genome-wide homology searching"	Dubious	chr4:405407-405511	405407-405511	98.7%	299.16	386.01	202.65	241.25	752.71	405.31	342.58	221.95	579.01	1.26	0.90	2.40	1.38	NaN	Covered/w/another[926]
YDL025C		"Putative protein kinase, potentially phosphorylated by Cdc28p; YDL025C is not an essential gene"	Uncharacterized	chr4:405341-407203	405341-407203	98.9%	200.81	249.66	222.52	209.50	387.52	353.87	225.24	216.01	370.69	0.83	0.88	1.54	0.78	0.75	Covered/w/another[926]
YDL024C	DIA3	"Protein of unknown function, involved in invasive and pseudohyphal growth"	Verified	chr4:408448-409854	408448-409854	99.0%	8.61	12.20	10.05	6.46	68.90	51.67	10.41	8.25	60.29	0.04	0.03	0.25	2.87	2.82	Covered/w/another[927]
YDL022C-A		Dubious open reading frame unlikely to encode a protein; partially overlaps the verified gene DIA3; identified by fungal homology and RT-PCR	Dubious	chr4:409805-410053	409805-410053	98.5%	0.00	16.30	4.08	4.08	24.45	20.38	8.15	4.08	22.41	0.03	0.02	0.09	2.46	NaN	Covered/w/another[927]
YDL022W	GPD1	"NAD-dependent glycerol-3-phosphate dehydrogenase, key enzyme of glycerol synthesis, essential for growth under osmotic stress; expression regulated by high-osmolarity glycerol response pathway; homolog of Gpd2p"	Verified	chr4:411822-412997	411822-412997	98.6%	585.51	889.91	1177.92	1121.87	3043.12	2787.01	737.71	1149.90	2915.06	2.72	4.67	12.08	1.34	1.17	Matched[929]
YDL023C		"Dubious open reading frame, unlikely to encode a protein; not conserved in other Saccharomyces species; overlaps the verified gene GPD1; deletion confers sensitivity to GSAO; deletion in cyr1 mutant results in loss of stress resistance"	Dubious	chr4:411758-412078	411758-412078	98.7%	340.87	511.31	640.72	624.93	1552.87	1562.34	426.09	632.82	1557.60	1.57	2.57	6.45	1.30	-0.00	Covered/w/another[929]
YDL021W	GPM2	Homolog of Gpm1p phosphoglycerate mutase which converts 3-phosphoglycerate to 2-phosphoglycerate in glycolysis; may be non-functional derivative of a gene duplication event	Verified	chr4:413950-414885	413950-414885	98.7%	96.33	324.70	127.72	134.21	996.84	521.69	210.52	130.96	759.27	0.78	0.53	3.15	2.54	2.33	Covered[930]
YDL020C	RPN4	Transcription factor that stimulates expression of proteasome genes; Rpn4p levels are in turn regulated by the 26S proteasome in a negative feedback control mechanism; RPN4 is transcriptionally regulated by various stress responses	Verified	chr4:415110-416705	415110-416705	99.2%	139.65	191.46	171.24	130.80	1176.56	730.45	165.55	151.02	953.50	0.61	0.61	3.95	2.66	2.62	Matched[931]
YDL019C	OSH2	"Member of an oxysterol-binding protein family with seven members in S. cerevisiae; family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability"	Verified	chr4:417660-421511	417660-421511	99.2%	166.23	161.26	184.82	175.66	285.87	379.33	163.75	180.24	332.60	0.60	0.73	1.38	0.88	1.26	Matched[933]
YDL018C	ERP3	"Protein with similarity to Emp24p and Erv25p, member of the p24 family involved in ER to Golgi transport"	Verified	chr4:422830-423507	422830-423507	99.2%	156.11	197.75	193.28	156.11	521.87	202.21	176.93	174.70	362.04	0.65	0.71	1.50	1.05	0.53	Frag>80[934,935]
YDL017W	CDC7	DDK (Dbf4-dependent kinase) catalytic subunit required for firing origins and replication fork progression in mitosis through phosphorylation of Mcm2-7p complexes and Cdc45p; kinase activity correlates with cyclical DBF4 expression	Verified	chr4:424206-425729	424206-425729	98.8%	43.19	54.49	39.20	44.52	53.82	43.19	48.84	41.86	48.51	0.18	0.17	0.20	0.21	0.61	Matched[936]
YDL016C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF CDC7/YDL153C, the catalytic subunit of a complex that regulates DNA replication"	Dubious	chr4:425567-425869	425567-425869	98.9%	263.59	286.95	236.90	293.62	380.37	190.18	275.27	265.26	285.28	1.02	1.08	1.18	0.10	-0.50	Frag<80[937]
YDL015C	TSC13	"Enoyl reductase that catalyzes the last step in each cycle of very long chain fatty acid elongation, localizes to the ER, highly enriched in a structure marking nuclear-vacuolar junctions, coimmunoprecipitates with elongases Fen1p and Sur4p"	Verified	chr4:425999-426931	425999-426931	99.0%	931.49	890.33	902.25	909.83	916.33	724.61	910.91	906.04	820.47	3.36	3.68	3.40	-0.14	0.05	Frag>80[937,938]
YDL014W	NOP1	"Nucleolar protein, component of the small subunit processome complex, which is required for processing of pre-18S rRNA; has similarity to mammalian fibrillarin"	Verified	chr4:427361-428344	427361-428344	89.3%	2063.94	1321.70	1728.11	1399.11	162.79	43.26	1692.82	1563.61	103.03	6.25	6.35	0.43	-3.92	-3.58	Matched[939]
YDL013W	SLX5	Subunit of the Slx5-Slx8 substrate-specific ubiquitin ligase complex; stimulated by prior attachment of SUMO to the substrate	Verified	chr4:429064-430923	429064-430923	98.4%	100.03	90.19	77.08	66.69	98.39	81.45	95.11	71.88	89.92	0.35	0.29	0.37	0.32	0.24	Matched[940]
YDL012C		Plasma membrane protein of unknown function; YDL012C is not an essential gene	Uncharacterized	chr4:431105-431514	431105-431383,431470-431514	98.5%	394.98	373.04	470.22	388.71	282.13	200.63	384.01	429.47	241.38	1.42	1.74	1.00	-0.83	-0.37	Matched[941]
YDL010W		Putative thiol oxidoreductase; green fluorescent protein (GFP)-fusion protein localizes to the vacuole; non-essential gene	Uncharacterized	chr4:432327-433022	432327-433022	98.6%	303.24	294.50	253.68	225.97	345.52	193.90	298.87	239.83	269.71	1.10	0.97	1.12	0.17	0.46	Matched[943]
YDL011C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the uncharacterized ORF YDL010W"	Dubious	chr4:432305-432628	432305-432628	98.5%	241.16	181.65	169.12	172.26	209.84	134.67	211.41	170.69	172.26	0.78	0.69	0.71	0.01	0.03	Matched[943]
YDL009C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YDL010W; YDL009C is not an essential gene"	Dubious	chr4:432922-433245	432922-433245	98.5%	394.83	347.83	347.83	228.75	438.70	235.02	371.33	288.29	336.86	1.37	1.17	1.40	0.22	-0.02	Matched[943]
YDL008W	APC11	"Catalytic core subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition"	Verified	chr4:433494-433991	433494-433991	98.7%	207.62	177.08	183.19	185.23	225.94	124.16	192.35	184.21	175.05	0.71	0.75	0.73	-0.07	-0.49	Matched[944]
YDL007C-A		Putative protein of unknown function	Uncharacterized	chr4:436564-436821	436564-436821	98.6%	0.00	0.00	0.00	0.00	0.00	15.73	0.00	0.00	7.86	0.00	0.00	0.03	Inf	NaN	
YDL007W	RPT2	One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; required for normal peptide hydrolysis by the core 20S particle	Verified	chr4:438044-439357	438044-439357	98.5%	850.28	662.61	746.79	774.59	1210.93	868.04	756.44	760.69	1039.48	2.79	3.09	4.31	0.45	0.36	Matched[945]
YDL006W	PTC1	"Type 2C protein phosphatase (PP2C); inactivates the osmosensing MAPK cascade by dephosphorylating Hog1p; mutation delays mitochondrial inheritance; deletion reveals defects in precursor tRNA splicing, sporulation and cell separation"	Verified	chr4:439906-440751	439906-440751	98.5%	159.58	166.77	148.78	140.38	183.57	100.78	163.18	144.58	142.18	0.60	0.59	0.59	-0.02	0.13	Matched[946]
YDL005C	MED2	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation	Verified	chr4:441011-442306	441011-442306	99.0%	275.06	261.03	260.25	253.24	288.30	238.43	268.04	256.74	263.37	0.99	1.04	1.09	0.04	0.37	Matched[947]
YDL004W	ATP16	"Delta subunit of the central stalk of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis; phosphorylated"	Verified	chr4:443026-443508	443026-443508	99.0%	721.38	905.38	928.38	1078.93	1662.31	1166.75	813.38	1003.66	1414.53	3.00	4.07	5.86	0.50	0.33	Matched[948]
YDL003W	MCD1	Essential protein required for sister chromatid cohesion in mitosis and meiosis; subunit of the cohesin complex; expression is cell cycle regulated and peaks in S phase	Verified	chr4:444680-446380	444680-446380	98.6%	238.46	197.92	218.19	182.42	93.60	49.48	218.19	200.31	71.54	0.81	0.81	0.30	-1.49	-0.84	Matched[949]
YDL002C	NHP10	"Protein related to mammalian high mobility group proteins; likely component of the INO80 complex, which is an ATP-dependent chromatin-remodeling complex"	Verified	chr4:446964-447575	446964-447575	99.5%	197.04	205.25	201.97	188.83	325.12	169.13	201.15	195.40	247.13	0.74	0.79	1.02	0.34	-0.21	Frag>80[950,951]
YDL001W	RMD1	Cytoplasmic protein required for sporulation	Verified	chr4:447981-449273	447981-449273	98.7%	98.71	86.18	90.88	71.29	68.94	52.49	92.45	81.09	60.72	0.34	0.33	0.25	-0.42	-0.11	Matched[952]
YDR001C	NTH1	"Neutral trehalase, degrades trehalose; required for thermotolerance and may mediate resistance to other cellular stresses; may be phosphorylated by Cdc28p"	Verified	chr4:450217-452472	450217-452472	98.7%	270.78	466.56	363.28	428.84	1874.34	1936.31	368.67	396.06	1905.32	1.36	1.61	7.89	2.27	2.55	Frag>80[953,954]
YDR002W	YRB1	"Ran GTPase binding protein; involved in nuclear protein import and RNA export, ubiquitin-mediated protein degradation during the cell cycle; shuttles between the nucleus and cytoplasm; is essential; homolog of human RanBP1"	Verified	chr4:453042-453647	453042-453647	98.3%	2668.72	2337.86	2342.90	2235.41	3308.61	2485.65	2503.29	2289.15	2897.13	9.24	9.29	12.00	0.34	0.06	Matched[955]
YDR003W	RCR2	"Vacuolar protein that presumably functions within the endosomal-vacuolar trafficking pathway, affecting events that determine whether plasma membrane proteins are degraded or routed to the plasma membrane; similar to Rcr1p"	Verified	chr4:454119-454751	454119-454751	98.6%	181.14	147.48	181.14	182.74	447.23	264.49	164.31	181.94	355.86	0.61	0.74	1.47	0.97	1.22	Matched[956]
YDR003W-A		Putative protein of unknown function; identified by expression profiling and mass spectrometry	Uncharacterized	chr4:454779-454901	454779-454901	98.4%	247.85	198.28	206.54	256.11	817.90	404.82	223.06	231.33	611.36	0.82	0.94	2.53	1.40	NaN	Matched[956]
YDR004W	RAD57	Protein that stimulates strand exchange by stabilizing the binding of Rad51p to single-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; forms heterodimer with Rad55p	Verified	chr4:455198-456580	455198-456580	98.7%	86.43	111.33	75.44	61.52	125.98	70.31	98.88	68.48	98.14	0.37	0.28	0.41	0.52	0.29	Matched[957]
YDR005C	MAF1	Negative regulator of RNA polymerase III; component of several signaling pathways that repress polymerase III transcription in response to changes in cellular environment; targets the initiation factor TFIIIB	Verified	chr4:456833-458100	456833-458014,458095-458100	99.0%	246.66	244.11	237.30	235.60	341.92	198.18	245.38	236.45	270.05	0.91	0.96	1.12	0.19	0.21	Matched[958]
YDR006C	SOK1	Protein whose overexpression suppresses the growth defect of mutants lacking protein kinase A activity; involved in cAMP-mediated signaling; localized to the nucleus; similar to the mouse testis-specific protein PBS13	Verified	chr4:458539-461244	458539-461244	98.9%	139.79	130.44	137.92	119.60	134.55	168.57	135.11	128.76	151.56	0.50	0.52	0.63	0.24	0.84	Matched[959]
YDR007W	TRP1	"Phosphoribosylanthranilate isomerase that catalyzes the third step in tryptophan biosynthesis; in 2004, the sequence of TRP1 from strain S228C was updated by changing the previously annotated internal STOP (TAA) to serine (TCA)"	Verified	chr4:461839-462513	461839-462513	98.5%	243.59	287.20	285.70	293.21	592.44	269.16	265.40	289.46	430.80	0.98	1.17	1.78	0.57	0.32	Frag>80[960,961]
YDR008C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr4:462249-462599	462249-462599	98.4%	254.76	243.18	280.82	289.51	555.85	251.87	248.97	285.16	403.86	0.92	1.16	1.67	0.50	0.03	Matched[961]
YDR009W	GAL3	Transcriptional regulator involved in activation of the GAL genes in response to galactose; forms a complex with Gal80p to relieve Gal80p inhibition of Gal4p; binds galactose and ATP but does not have galactokinase activity	Verified	chr4:463431-464993	463431-464993	98.8%	20.07	19.42	23.95	17.48	27.19	23.95	19.75	20.72	25.57	0.07	0.08	0.11	0.30	1.02	
YDR010C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr4:465048-465380	465048-465380	98.6%	9.13	27.40	21.31	9.13	21.31	12.18	18.27	15.22	16.75	0.07	0.06	0.07	0.14	0.91	
YDR011W	SNQ2	"Plasma membrane ATP-binding cassette (ABC) transporter, multidrug transporter involved in multidrug resistance and resistance to singlet oxygen species"	Verified	chr4:465916-470421	465916-470421	98.7%	276.22	297.79	272.62	274.65	462.31	651.10	287.01	273.63	556.71	1.06	1.11	2.31	1.02	1.47	Frag>80[963,964]
YDR012W	RPL4B	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Ap and has similarity to E. coli L4 and rat L4 ribosomal proteins"	Verified	chr4:471850-472938	471850-472938	7.4%	3749.61	2644.59	2570.10	1514.74	831.87	235.90	3197.10	2042.42	533.89	11.80	8.29	2.21	-1.94	-2.90	Frag<80[966,967,968,969]
YDR013W	PSF1	"Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p), which is localized to DNA replication origins and implicated in assembly of the DNA replication machinery"	Verified	chr4:473154-473780	473154-473780	98.8%	122.70	158.22	98.49	119.48	74.27	58.12	140.46	108.98	66.20	0.52	0.44	0.27	-0.72	-0.78	Matched[970]
YDR014W	RAD61	Protein of unknown function; mutation confers radiation sensitivity	Verified	chr4:474043-475986	474043-475986	99.0%	45.22	46.78	41.06	32.23	41.58	36.90	46.00	36.64	39.24	0.17	0.15	0.16	0.10	0.79	Matched[971]
YDR014W-A	HED1	"Meiosis-specific protein that down-regulates Rad51p-mediated mitotic recombination when the meiotic recombination machinery is impaired; early meiotic gene, transcribed specifically during meiotic prophase"	Verified	chr4:477794-478282	477794-478282	98.3%	2.08	4.16	6.24	4.16	24.95	14.56	3.12	5.20	19.76	0.01	0.02	0.08	1.93	NaN	Frag<80[973]
YDR015C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene HED1/YDR014W-A"	Dubious	chr4:477957-478196	477957-478196	98.1%	4.25	8.50	0.00	4.25	25.49	8.50	6.37	2.12	16.99	0.02	0.01	0.07	3.00	0.12	Matched[973]
YDR016C	DAD1	"Essential subunit of the Dam1 complex (aka DASH complex), couples kinetochores to the force produced by MT depolymerization thereby aiding in chromosome segregation; is transferred to the kinetochore prior to mitosis"	Verified	chr4:478471-478755	478471-478755	99.3%	339.12	356.79	423.90	310.86	558.14	335.59	347.95	367.38	446.86	1.28	1.49	1.85	0.28	-0.19	Matched[973]
YDR017C	KCS1	"Inositol hexakisphosphate (IP6) kinase, also has inositol heptakisphosphate (IP7) kinase activity, required for proper vacuole morphology and involved in salt stress response; contains two leucine heptad repeats"	Verified	chr4:479112-482264	479112-482264	99.1%	146.53	164.12	116.46	103.98	81.58	74.54	155.33	110.22	78.06	0.57	0.45	0.32	-0.50	-0.02	Covered/w/another[974]
YDR018C		"Probable membrane protein with three predicted transmembrane domains; homologous to Ybr042cp, similar to C. elegans F55A11.5 and maize 1-acyl-glycerol-3-phosphate acyltransferase; null exhibits no apparent phenotype"	Uncharacterized	chr4:482667-483857	482667-483857	99.0%	11.03	16.96	13.57	23.75	153.50	90.75	13.99	18.66	122.12	0.05	0.08	0.51	2.71	2.60	Covered/w/another[974]
YDR019C	GCV1	"T subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm"	Verified	chr4:484160-485362	484160-485362	99.2%	1380.38	1268.98	1458.28	1228.77	689.35	479.11	1324.68	1343.52	584.23	4.89	5.45	2.42	-1.20	-1.40	Frag>80[975,976]
YDR020C		Predicted protein shares weak similarity with uridine kinases and with phosphoribokinases; null mutant suppresses dst1delta sensitivity for 6-azauracil	Uncharacterized	chr4:485743-486441	485743-486441	99.4%	110.79	84.89	76.26	69.06	21.58	18.71	97.84	72.66	20.14	0.36	0.29	0.08	-1.85	-2.49	Matched[977]
YDR021W	FAL1	"Nucleolar protein required for maturation of 18S rRNA, member of the eIF4A subfamily of DEAD-box ATP-dependent RNA helicases"	Verified	chr4:486801-488000	486801-488000	98.8%	78.48	36.29	50.63	33.76	7.59	7.59	57.38	42.19	7.59	0.21	0.17	0.03	-2.47	-2.16	Matched[978]
YDR022C	CIS1	Protein required for autophagosome formation in concert with Atg17p; may be involved in microtubule organization; high-copy suppressor of CIK1 deletion	Verified	chr4:488069-488659	488069-488659	99.4%	119.14	108.93	124.25	86.80	275.73	248.49	114.03	105.52	262.11	0.42	0.43	1.09	1.31	1.45	Matched[979]
YDR023W	SES1	"Cytosolic seryl-tRNA synthetase, class II aminoacyl-tRNA synthetase that aminoacylates tRNA(Ser), displays tRNA-dependent amino acid recognition which enhances discrimination of the serine substrate, interacts with peroxin Pex21p"	Verified	chr4:489505-490893	489505-490893	98.7%	1821.42	1488.93	1622.36	1634.76	604.47	462.28	1655.17	1628.56	533.37	6.11	6.61	2.21	-1.61	-1.37	Matched[980]
YDR024W	FYV1	"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; mutation decreases survival upon exposure to K1 killer toxin"	Dubious	chr4:491014-491499	491014-491499	98.9%	164.33	85.28	128.97	108.16	27.04	24.96	124.80	118.56	26.00	0.46	0.48	0.11	-2.19	-0.59	Overlap[980,981]
YDR025W	RPS11A	Protein component of the small (40S) ribosomal subunit; identical to Rps11Bp and has similarity to E. coli S17 and rat S11 ribosomal proteins	Verified	chr4:491512-492321	491512-491556,491896-492321	50.9%	6600.83	4869.26	5641.17	4247.57	963.84	509.04	5735.05	4944.37	736.44	21.17	20.07	3.05	-2.75	-3.20	Matched[981]
YDR026C		"Protein of unknown function that may interact with ribosomes, based on co-purification experiments; Myb-like DNA-binding protein that may bind to the Ter region of rDNA; interacts physically with Fob1p"	Verified	chr4:492553-494265	492553-494265	99.5%	146.15	132.65	106.83	79.83	85.11	41.67	139.40	93.33	63.39	0.51	0.38	0.26	-0.56	-0.79	Matched[982]
YDR027C	VPS54	"Component of the GARP (Golgi-associated retrograde protein) complex, Vps51p-Vps52p-Vps53p-Vps54p, which is required for the recycling of proteins from endosomes to the late Golgi; potentially phosphorylated by Cdc28p"	Verified	chr4:494646-497315	494646-497315	99.4%	112.34	128.17	119.12	105.93	183.21	144.00	120.25	112.53	163.61	0.44	0.46	0.68	0.54	0.60	Matched[983]
YDR028C	REG1	"Regulatory subunit of type 1 protein phosphatase Glc7p, involved in negative regulation of glucose-repressible genes"	Verified	chr4:497832-500876	497832-500876	99.2%	359.54	343.98	314.84	343.65	372.45	420.45	351.76	329.25	396.45	1.30	1.34	1.64	0.27	0.94	Frag>80[984,985]
YDR029W		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr4:501097-501411	501097-501411	99.4%	143.75	111.81	121.39	127.78	198.06	169.31	127.78	124.58	183.68	0.47	0.51	0.76	0.56	0.05	Covered/w/another[985]
YDR030C	RAD28	Protein involved in transcription-coupled repair nucleotide excision repair of UV-induced DNA lesions; homolog of human CSA protein	Verified	chr4:501750-503270	501750-503270	99.4%	36.39	43.67	35.07	15.88	77.42	44.34	40.03	25.48	60.88	0.15	0.10	0.25	1.26	1.10	Matched[986]
YDR031W	MIC14	Mitochondrial intermembrane space cysteine motif protein of 14 kDa	Verified	chr4:503495-503860	503495-503860	98.5%	177.57	241.39	255.26	283.01	879.54	463.35	209.48	269.13	671.45	0.77	1.09	2.78	1.32	0.60	Matched[987]
YDR032C	PST2	"Protein with similarity to members of a family of flavodoxin-like proteins; induced by oxidative stress in a Yap1p dependent manner; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr4:504096-504692	504096-504692	98.7%	1699.13	2210.06	2009.76	1929.98	4223.21	3108.00	1954.59	1969.87	3665.61	7.22	8.00	15.19	0.90	0.64	Matched[988]
YDR033W	MRH1	"Protein that localizes primarily to the plasma membrane, also found at the nuclear envelope; the authentic, non-tagged protein is detected in mitochondria in a phosphorylated state; has similarity to Hsp30p and Yro2p"	Verified	chr4:508144-509106	508144-509106	97.3%	5250.07	7606.08	4782.49	5044.04	2860.96	2176.67	6428.08	4913.26	2518.82	23.73	19.94	10.44	-0.96	-1.48	Matched[990]
YDR034C	LYS14	Transcriptional activator involved in regulation of genes of the lysine biosynthesis pathway; requires 2-aminoadipate semialdehyde as co-inducer	Verified	chr4:509734-512106	509734-512106	99.1%	127.52	160.67	95.21	81.19	96.06	92.66	144.10	88.20	94.36	0.53	0.36	0.39	0.10	0.24	Covered[991]
YDR034C-A		Putative protein of unknown function; contained within the solo Ty1 LTR element YDRWdelta7	Uncharacterized	chr4:520513-520689	520513-520689	29.0%	38.96	0.00	0.00	0.00	19.48	0.00	19.48	0.00	9.74	0.07	0.00	0.04	Inf	0.03	
YDR034W-B		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery	Uncharacterized	chr4:521311-521466	521311-521466	99.2%	6.46	12.92	12.92	0.00	2138.93	1105.01	9.69	6.46	1621.97	0.04	0.03	6.72	7.97	3.76	Matched[993]
YDR035W	ARO3	"3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase, catalyzes the first step in aromatic amino acid biosynthesis and is feedback-inhibited by phenylalanine or high concentration of tyrosine or tryptophan"	Verified	chr4:521813-522925	521813-522925	98.5%	867.17	1742.55	790.58	866.26	411.25	329.18	1304.86	828.42	370.21	4.82	3.36	1.53	-1.16	-0.95	Matched[994]
YDR036C	EHD3	"Protein with an indirect role in endocytic membrane trafficking, member of a family of enoyl-CoA hydratase/isomerases; non-tagged protein is detected in highly purified mitochondria in high-throughput studies; phosphorylated"	Verified	chr4:523208-524710	523208-524710	98.9%	197.75	159.41	189.01	166.14	168.83	164.79	178.58	177.57	166.81	0.66	0.72	0.69	-0.09	0.23	Matched[995]
YDR037W	KRS1	Lysyl-tRNA synthetase; also identified as a negative regulator of general control of amino acid biosynthesis	Verified	chr4:525437-527212	525437-527212	98.5%	1968.00	1815.43	1726.29	1669.71	368.57	312.00	1891.71	1698.00	340.29	6.98	6.89	1.41	-2.32	-1.59	Matched[996]
YDR038C	ENA5	"Protein with similarity to P-type ATPase sodium pumps, member of the Na+ efflux ATPase family"	Verified	chr4:527419-530694	527419-530694	3.7%	122.66	196.25	179.90	106.30	122.66	40.89	159.45	143.10	81.77	0.59	0.58	0.34	-0.81	-0.24	Overlap[996]
YDR039C	ENA2	"P-type ATPase sodium pump, involved in Na+ efflux to allow salt tolerance; likely not involved in Li+ efflux"	Verified	chr4:531304-534579	531304-534579	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.80	
YDR040C	ENA1	"P-type ATPase sodium pump, involved in Na+ and Li+ efflux to allow salt tolerance"	Verified	chr4:535189-538464	535189-538464	8.9%	13.72	27.44	3.43	20.58	48.02	68.60	20.58	12.01	58.31	0.08	0.05	0.24	2.28	0.65	Frag<80[997]
YDR041W	RSM10	"Mitochondrial ribosomal protein of the small subunit, has similarity to E. coli S10 ribosomal protein; essential for viability, unlike most other mitoribosomal proteins"	Verified	chr4:539800-540411	539800-540411	98.7%	377.46	344.35	443.68	405.60	592.67	374.15	360.90	424.64	483.41	1.33	1.72	2.00	0.19	-0.40	Matched[998]
YDR042C		Putative protein of unknown function; expression is increased in ssu72-ts69 mutant	Uncharacterized	chr4:540598-541200	540598-541200	99.0%	18.43	10.05	20.10	3.35	13.40	8.38	14.24	11.73	10.89	0.05	0.05	0.05	-0.11	-0.41	Frag<80[999,1000]
YDR043C	NRG1	Transcriptional repressor that recruits the Cyc8p-Tup1p complex to promoters; mediates glucose repression and negatively regulates a variety of processes including filamentous growth and alkaline pH response	Verified	chr4:542672-543367	542672-543367	99.2%	75.29	86.87	83.98	85.42	412.64	220.08	81.08	84.70	316.36	0.30	0.34	1.31	1.90	1.78	Matched[1002]
YDR044W	HEM13	"Coproporphyrinogen III oxidase, an oxygen requiring enzyme that catalyzes the sixth step in the heme biosynthetic pathway; localizes to the mitochondrial inner membrane; transcription is repressed by oxygen and heme (via Rox1p and Hap1p)"	Verified	chr4:546640-547626	546640-547626	98.7%	317.10	3603.03	334.54	379.70	188.82	163.17	1960.06	357.12	176.00	7.24	1.45	0.73	-1.02	-0.53	Matched[1006]
YDR045C	RPC11	RNA polymerase III subunit C11; mediates pol III RNA cleavage activity and is important for termination of transcription; homologous to TFIIS	Verified	chr4:547976-548308	547976-548308	99.1%	430.30	275.76	339.39	248.48	145.45	93.94	353.03	293.94	119.70	1.30	1.19	0.50	-1.30	-1.81	Matched[1007]
YDR046C	BAP3	"Amino acid permease involved in the uptake of cysteine, leucine, isoleucine and valine"	Verified	chr4:548760-550574	548760-550574	98.8%	405.31	601.55	428.16	296.03	129.34	83.63	503.43	362.10	106.48	1.86	1.47	0.44	-1.77	-1.50	Frag>80[1008,1009]
YDR047W	HEM12	"Uroporphyrinogen decarboxylase, catalyzes the fifth step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus; activity inhibited by Cu2+, Zn2+, Fe2+, Fe3+ and sulfhydryl-specific reagents"	Verified	chr4:551858-552946	551858-552946	98.4%	528.09	599.93	532.75	487.97	380.67	325.62	564.01	510.36	353.15	2.08	2.07	1.46	-0.53	-0.43	Matched[1010]
YDR049W		Zinc finger protein; putative transcription factor that may interact with proteins involved in histone acetylation or deacetylation; may be involved in altering acetylation on histone lysines	Uncharacterized	chr4:553252-555150	553252-555150	98.4%	111.33	105.98	87.24	80.29	67.98	66.37	108.65	83.76	67.17	0.40	0.34	0.28	-0.32	-0.01	Matched[1011]
YDR048C		"Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:553082-553396	553082-553396	98.7%	48.26	28.96	28.96	28.96	19.31	57.92	38.61	28.96	38.61	0.14	0.12	0.16	0.42	1.00	Covered/w/another[1011]
YDR050C	TPI1	"Triose phosphate isomerase, abundant glycolytic enzyme; mRNA half-life is regulated by iron availability; transcription is controlled by activators Reb1p, Gcr1p, and Rap1p through binding sites in the 5' non-coding region"	Verified	chr4:555724-556470	555724-556470	98.7%	26658.53	27607.52	25194.37	23705.81	18917.47	15431.96	27133.03	24450.09	17174.71	100.16	99.25	71.16	-0.51	-1.90	Frag>80[1012,1013,1014]
YDR051C		Protein of unknown function; interacts with Hsp82p in two-hybrid assay; deletion confers sensitivity to Nickel	Uncharacterized	chr4:557054-558058	557054-558058	99.3%	232.50	219.48	212.46	199.43	266.58	168.36	225.99	205.95	217.47	0.83	0.84	0.90	0.08	-0.25	Matched[1015]
YDR053W		Putative protein of unknown function; open reading frame overlaps 5' end of essential DBF4 gene encoding the regulatory subunit of the Cdc7p-Dbf4p kinase complex	Dubious	chr4:560247-560642	560247-560642	99.1%	109.60	127.44	94.31	99.41	56.07	107.05	118.52	96.86	81.56	0.44	0.39	0.34	-0.25	-0.03	Covered/w/another[1016]
YDR052C	DBF4	"Regulatory subunit of Cdc7p-Dbf4p kinase complex, required for Cdc7p kinase activity and initiation of DNA replication; phosphorylates the Mcm2-7 family of proteins; cell cycle regulated"	Verified	chr4:558509-560623	558509-560623	99.2%	164.43	161.57	159.19	143.46	128.68	122.96	163.00	151.32	125.82	0.60	0.61	0.52	-0.27	0.19	Matched[1016]
YDR054C	CDC34	"Ubiquitin-conjugating enzyme (E2) and catalytic subunit of SCF ubiquitin-protein ligase complex (together with Skp1p, Rbx1p, Cdc53p, and an F-box protein) that regulates cell cycle progression by targeting key substrates for degradation"	Verified	chr4:561438-562325	561438-562325	99.1%	412.32	455.49	517.96	479.34	699.70	499.79	433.91	498.65	599.74	1.60	2.02	2.48	0.27	0.59	Matched[1018]
YDR055W	PST1	"Cell wall protein that contains a putative GPI-attachment site; secreted by regenerating protoplasts; up-regulated by activation of the cell integrity pathway, as mediated by Rlm1p; upregulated by cell wall damage via disruption of FKS1"	Verified	chr4:563525-564859	563525-564859	99.2%	476.45	646.34	410.00	343.56	1382.54	908.35	561.40	376.78	1145.45	2.07	1.53	4.75	1.60	1.56	Frag>80[1020,1021,1022]
YDR056C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic retiuculum; YDR056C is not an essential protein	Uncharacterized	chr4:565021-565638	565021-565638	99.4%	527.33	784.48	460.60	460.60	362.95	278.31	655.91	460.60	320.63	2.42	1.87	1.33	-0.52	-0.40	Frag>80[1022,1023]
YDR057W	YOS9	"ER quality-control lectin; integral subunit of the HRD ligase; serves as a receptor for misfolded N-glycosylated proteins, participates in their targeting to ERAD; member of the OS-9 protein family"	Verified	chr4:565925-567553	565925-567553	98.7%	79.03	110.14	89.60	74.05	82.76	60.36	94.58	81.83	71.56	0.35	0.33	0.30	-0.19	0.41	Matched[1024]
YDR058C	TGL2	Protein with lipolytic activity towards triacylglycerols and diacylglycerols when expressed in E. coli; role in yeast lipid degradation is unclear	Verified	chr4:567721-568701	567721-568701	99.1%	92.56	117.24	78.16	74.05	229.34	167.63	104.90	76.10	198.48	0.39	0.31	0.82	1.38	0.83	Matched[1025]
YDR059C	UBC5	"Ubiquitin-conjugating enzyme that mediates selective degradation of short-lived and abnormal proteins, central component of the cellular stress response; expression is heat inducible"	Verified	chr4:569232-569768	569232-569631,569722-569768	98.3%	156.97	179.72	152.42	159.24	345.78	220.66	168.34	155.83	283.22	0.62	0.63	1.17	0.86	0.40	Matched[1026]
YDR060W	MAK21	"Constituent of 66S pre-ribosomal particles, required for large (60S) ribosomal subunit biogenesis; involved in nuclear export of pre-ribosomes; required for maintenance of dsRNA virus; homolog of human CAATT-binding protein"	Verified	chr4:570646-573723	570646-573723	98.6%	432.15	223.98	249.67	230.90	26.35	11.86	328.06	240.28	19.10	1.21	0.98	0.08	-3.65	-2.31	Matched[1028]
YDR061W		Protein with similarity to ATP-binding cassette (ABC) transporter family members; lacks predicted membrane-spanning regions; transcriptionally activated by Yrm1p along with genes involved in multidrug resistance	Uncharacterized	chr4:574161-575780	574161-575780	98.5%	147.32	166.75	154.21	129.76	164.87	110.33	157.03	141.99	137.60	0.58	0.58	0.57	-0.05	0.14	Matched[1029]
YDR062W	LCB2	"Component of serine palmitoyltransferase, responsible along with Lcb1p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine"	Verified	chr4:576471-578156	576471-578156	98.9%	871.16	744.56	738.56	707.36	407.38	367.18	807.86	722.96	387.28	2.98	2.93	1.60	-0.90	-0.65	Covered/w/another[1030]
YDR063W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YDR063W is not an essential gene	Uncharacterized	chr4:578661-579110	578661-579110	98.5%	430.87	460.19	439.89	446.66	882.04	588.78	445.53	443.27	735.41	1.64	1.80	3.05	0.73	0.65	Covered/w/another[1030]
YDR064W	RPS13	Protein component of the small (40S) ribosomal subunit; has similarity to E. coli S15 and rat S13 ribosomal proteins	Verified	chr4:579456-580450	579456-579476,580016-580450	98.9%	9975.61	8093.13	8341.46	6736.14	2549.89	1920.18	9034.37	7538.80	2235.03	33.35	30.60	9.26	-1.75	-1.80	Matched[1031]
YDR065W		"Protein of unknown function, required for vacuolar acidification; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr4:580685-581782	580685-581782	98.7%	55.35	76.57	55.35	38.74	47.97	40.59	65.96	47.05	44.28	0.24	0.19	0.18	-0.09	-0.28	Covered/w/another[1032]
YDR066C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YDR066C is not an essential gene	Uncharacterized	chr4:581906-582496	581906-582496	99.2%	71.61	97.19	73.32	54.56	104.01	54.56	84.40	63.94	79.28	0.31	0.26	0.33	0.31	0.39	Covered/w/another[1032]
YDR067C		"Cytoplasmic protein required for replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts"	Uncharacterized	chr4:582789-583463	582789-583463	99.4%	162.52	184.89	126.74	125.25	250.50	140.16	173.71	125.99	195.33	0.64	0.51	0.81	0.63	0.52	Covered/w/another[1032]
YDR068W	DOS2	"Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm"	Verified	chr4:583711-584643	583711-584643	98.2%	362.23	280.40	302.22	305.50	325.14	218.21	321.32	303.86	271.67	1.19	1.23	1.13	-0.16	-0.29	Matched[1033]
YDR069C	DOA4	"Ubiquitin isopeptidase, required for recycling ubiquitin from proteasome-bound ubiquitinated intermediates, acts at the late endosome/prevacuolar compartment to recover ubiquitin from ubiquitinated membrane proteins en route to the vacuole"	Verified	chr4:584937-587717	584937-587717	99.1%	64.61	77.31	68.96	67.51	109.62	132.12	70.96	68.24	120.87	0.26	0.28	0.50	0.82	1.12	Matched[1034]
YDR070C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr4:588096-588377	588096-588377	99.0%	25.06	229.15	71.61	157.54	3723.71	2259.29	127.11	114.58	2991.50	0.47	0.47	12.39	4.71	3.69	Matched[1035]
YDR071C	PAA1	"Polyamine acetyltransferase; acetylates polyamines (e.g. putrescine, spermidine, spermine) and also aralkylamines (e.g. tryptamine, phenylethylamine); may be involved in transcription and/or DNA replication"	Verified	chr4:588825-589400	588825-589400	99.2%	1165.52	1006.27	1205.78	997.52	1450.78	829.52	1085.90	1101.65	1140.15	4.01	4.47	4.72	0.05	-0.15	Frag>80[1036,1037,1038]
YDR072C	IPT1	"Inositolphosphotransferase 1, involved in synthesis of mannose-(inositol-P)2-ceramide (M(IP)2C), which is the most abundant sphingolipid in cells, mutation confers resistance to the antifungals syringomycin E and DmAMP1 in some growth media"	Verified	chr4:589759-591342	589759-591342	98.7%	326.94	335.89	397.95	303.90	260.40	147.79	331.41	350.93	204.09	1.22	1.42	0.85	-0.78	-0.58	Frag>80[1038,1039,1040]
YDR073W	SNF11	Subunit of the SWI/SNF chromatin remodeling complex involved in transcriptional regulation; interacts with a highly conserved 40-residue sequence of Snf2p	Verified	chr4:592436-592945	592436-592945	91.6%	284.57	286.71	263.17	233.22	442.90	220.38	285.64	248.19	331.64	1.05	1.01	1.37	0.42	0.46	Covered[1041]
YDR074W	TPS2	"Phosphatase subunit of the trehalose-6-phosphate synthase/phosphatase complex, which synthesizes the storage carbohydrate trehalose; expression is induced by stress conditions and repressed by the Ras-cAMP pathway"	Verified	chr4:593890-596580	593890-596580	98.8%	243.83	431.59	578.34	691.60	2341.56	2781.05	337.71	634.97	2561.31	1.25	2.58	10.61	2.01	1.95	Matched[1043]
YDR075W	PPH3	Catalytic subunit of an evolutionarily conserved protein phosphatase complex containing Psy2p and the regulatory subunit Psy4p; required for cisplatin resistance; involved in activation of Gln3p	Verified	chr4:597153-598079	597153-598079	98.6%	99.55	113.78	86.43	92.99	40.48	12.03	106.66	89.71	26.26	0.39	0.36	0.11	-1.77	-1.03	Matched[1044]
YDR076W	RAD55	Protein that stimulates strand exchange by stabilizing the binding of Rad51p to single-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; forms heterodimer with Rad57p	Verified	chr4:598465-599685	598465-599685	98.7%	50.61	59.74	34.02	26.55	48.95	33.19	55.18	30.29	41.07	0.20	0.12	0.17	0.44	-0.33	Covered[1045]
YDR077W	SED1	"Major stress-induced structural GPI-cell wall glycoprotein in stationary-phase cells, associates with translating ribosomes, possible role in mitochondrial genome maintenance; ORF contains two distinct variable minisatellites"	Verified	chr4:600790-601806	600790-601806	75.1%	9042.74	14540.69	11766.17	10875.39	16162.44	17142.29	11791.71	11320.78	16652.37	43.53	45.95	69.00	0.56	-0.10	Matched[1046]
YDR078C	SHU2	"Protein of unassigned function involved in mutation suppression, important for error-free repair of spontaneous and induced DNA lesions to protect the genome from mutation; associates with Shu1p, Psy3p, and Csm2p"	Verified	chr4:602195-602866	602195-602866	99.4%	101.84	79.38	74.88	50.92	110.83	38.94	90.61	62.90	74.88	0.33	0.26	0.31	0.25	-1.03	Matched[1047]
YDR079W	PET100	"Chaperone that specifically facilitates the assembly of cytochrome c oxidase, integral to the mitochondrial inner membrane; interacts with a subcomplex of subunits VII, VIIa, and VIII (Cox7p, Cox9p, and Cox8p) but not with the holoenzyme"	Verified	chr4:603061-603396	603061-603396	98.3%	290.58	360.20	281.50	354.14	665.91	320.85	325.39	317.82	493.38	1.20	1.29	2.04	0.63	-0.14	Matched[1048]
YDR079C-A	TFB5	Component of the RNA polymerase II general transcription and DNA repair factor TFIIH; involved in transcription initiation; homolog of the Chlamydomonas reinhardtii REX1-S protein which is involved in DNA repair	Verified	chr4:603590-603808	603590-603808	99.4%	192.99	119.47	192.99	170.02	372.20	151.64	156.23	181.50	261.92	0.58	0.74	1.09	0.53	-0.42	Matched[1049]
YDR080W	VPS41	Vacuolar membrane protein that is a subunit of the homotypic vacuole fusion and vacuole protein sorting (HOPS) complex; essential for membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of protein transport	Verified	chr4:604005-606983	604005-606983	98.5%	95.06	82.79	80.41	65.76	119.59	116.18	88.93	73.08	117.89	0.33	0.30	0.49	0.69	0.77	Matched[1050]
YDR081C	PDC2	"Transcription factor required for the synthesis of the glycolytic enzyme pyruvate decarboxylase, required for high level expression of both the THI and the PDC genes"	Verified	chr4:607301-610078	607301-610078	99.2%	138.66	127.77	106.35	97.64	59.17	58.80	133.21	102.00	58.98	0.49	0.41	0.24	-0.79	-0.57	Matched[1051]
YDR082W	STN1	"Telomere end-binding and capping protein, plays a key role with Pol12p in linking telomerase action with completion of lagging strand synthesis, and in a regulatory step required for telomere capping"	Verified	chr4:610438-611922	610438-611922	98.8%	60.67	88.63	64.77	53.86	44.99	38.86	74.65	59.31	41.93	0.28	0.24	0.17	-0.50	-0.34	Covered/w/another[1052]
YDR083W	RRP8	"Nucleolar protein involved in rRNA processing, pre-rRNA cleavage at site A2; also involved in telomere maintenance; mutation is synthetically lethal with a gar1 mutation"	Verified	chr4:612070-613248	612070-613248	98.5%	331.62	163.66	205.00	199.83	23.26	17.23	247.64	202.42	20.24	0.91	0.82	0.08	-3.32	-2.68	Covered/w/another[1052]
YDR084C	TVP23	Integral membrane protein localized to late Golgi vesicles along with the v-SNARE Tlg2p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern	Verified	chr4:613402-614001	613402-614001	98.8%	307.02	366.06	318.83	418.36	479.09	323.89	336.54	368.59	401.49	1.24	1.50	1.66	0.12	0.23	Matched[1053]
YDR085C	AFR1	"Alpha-factor pheromone receptor regulator, negatively regulates pheromone receptor signaling; required for normal mating projection (shmoo) formation; required for Spa2p to recruit Mpk1p to shmoo tip during mating; interacts with Cdc12p"	Verified	chr4:614285-616147	614285-616147	99.2%	53.55	76.27	93.58	90.33	318.60	210.42	64.91	91.96	264.51	0.24	0.37	1.10	1.52	1.62	Frag>80[1054,1055]
YDR086C	SSS1	"Subunit of the Sec61p translocation complex (Sec61p-Sss1p-Sbh1p) that forms a channel for passage of secretory proteins through the endoplasmic reticulum membrane, and of the Ssh1p complex (Ssh1p-Sbh2p-Sss1p); interacts with Ost4p and Wbp1p"	Verified	chr4:616925-617167	616925-617167	99.6%	2681.82	2371.90	2462.81	2276.86	2206.61	1227.27	2526.86	2369.83	1716.94	9.33	9.62	7.11	-0.46	-1.54	Matched[1056]
YDR087C	RRP1	"Essential evolutionarily conserved nucleolar protein necessary for biogenesis of 60S ribosomal subunits and processing of pre-rRNAs to mature rRNAs, associated with several distinct 66S pre-ribosomal particles"	Verified	chr4:617467-618303	617467-618303	99.4%	254.81	146.63	159.86	139.42	18.03	8.41	200.72	149.64	13.22	0.74	0.61	0.05	-3.50	-2.82	Matched[1057]
YDR088C	SLU7	"RNA splicing factor, required for ATP-independent portion of 2nd catalytic step of spliceosomal RNA splicing; interacts with Prp18p; contains zinc knuckle domain"	Verified	chr4:618494-619642	618494-619642	99.5%	127.70	112.83	116.33	97.08	138.19	101.46	120.26	106.71	119.83	0.44	0.43	0.50	0.17	0.18	Matched[1058]
YDR089W		Protein of unknown function; deletion confers resistance to Nickel	Uncharacterized	chr4:622109-624718	622109-624718	99.1%	176.34	176.34	194.13	143.08	111.76	88.94	176.34	168.61	100.35	0.65	0.68	0.42	-0.75	-0.22	
YDR090C		Putative protein of unknown function	Uncharacterized	chr4:625063-625995	625063-625995	98.9%	110.50	118.08	132.17	95.33	75.83	74.75	114.29	113.75	75.29	0.42	0.46	0.31	-0.60	-0.24	Covered[1060]
YDR091C	RLI1	Essential iron-sulfur protein required for ribosome biogenesis and translation initiation; facilitates binding of a multifactor complex (MFC) of translation initiation factors to the small ribosomal subunit; predicted ABC family ATPase	Verified	chr4:626705-628531	626705-628531	99.1%	448.31	316.36	340.10	291.51	41.96	36.44	382.33	315.80	39.20	1.41	1.28	0.16	-3.01	-2.16	Matched[1062]
YDR092W	UBC13	Ubiquitin-conjugating enzyme involved in the error-free DNA postreplication repair pathway; interacts with Mms2p to assemble ubiquitin chains at the Ub Lys-63 residue; DNA damage triggers redistribution from the cytoplasm to the nucleus	Verified	chr4:629873-630602	629873-629902,630171-630602	98.6%	511.25	577.07	471.75	489.30	664.84	419.09	544.16	480.53	541.96	2.01	1.95	2.25	0.17	0.02	Matched[1063]
YDR093W	DNF2	"Aminophospholipid translocase (flippase) that localizes primarily to the plasma membrane; contributes to endocytosis, protein transport and cell polarity; type 4 P-type ATPase"	Verified	chr4:631279-636117	631279-636117	98.6%	131.01	136.25	127.24	108.58	54.50	65.82	133.63	117.91	60.16	0.49	0.48	0.25	-0.97	-0.34	Matched[1064]
YDR094W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified ORF DNF2"	Dubious	chr4:635837-636172	635837-636172	98.4%	275.31	302.53	347.91	229.93	220.85	151.27	288.92	288.92	186.06	1.07	1.17	0.77	-0.63	-0.25	Covered/w/another[1064]
YDR095C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:636114-636524	636114-636524	98.0%	14.89	29.78	29.78	17.37	29.78	22.34	22.34	23.58	26.06	0.08	0.10	0.11	0.14	0.12	Overlap[1064,1065]
YDR096W	GIS1	JmjC domain-containing histone demethylase; transcription factor involved in the expression of genes during nutrient limitation; also involved in the negative regulation of DPP1 and PHR1	Verified	chr4:637136-639820	637136-639820	99.1%	106.78	110.91	149.64	154.15	256.80	234.99	108.85	151.90	245.89	0.40	0.62	1.02	0.69	1.07	Matched[1065]
YDR097C	MSH6	"Protein required for mismatch repair in mitosis and meiosis, forms a complex with Msh2p to repair both single-base & insertion-deletion mispairs; potentially phosphorylated by Cdc28p"	Verified	chr4:640106-643834	640106-643834	99.3%	113.46	73.75	79.42	77.26	22.69	15.40	93.60	78.34	19.04	0.35	0.32	0.08	-2.04	-1.75	Matched[1066]
YDR098C	GRX3	Hydroperoxide and superoxide-radical responsive glutathione-dependent oxidoreductase; monothiol glutaredoxin subfamily member along with Grx4p and Grx5p; protects cells from oxidative damage	Verified	chr4:644175-645032	644175-645032	99.1%	554.17	430.63	541.23	457.69	330.62	210.61	492.40	499.46	270.61	1.82	2.03	1.12	-0.88	-0.62	Frag>80[1067,1068]
YDR099W	BMH2	"14-3-3 protein, minor isoform; controls proteome at post-transcriptional level, binds proteins and DNA, involved in regulation of many processes including exocytosis, vesicle transport, Ras/MAPK signaling, and rapamycin-sensitive signaling"	Verified	chr4:652777-654425	652777-652778,653521-654425	93.6%	1816.61	2084.04	1894.36	1871.98	2736.70	1930.89	1950.32	1883.17	2333.79	7.20	7.64	9.67	0.31	0.34	Matched[1071]
YDR100W	TVP15	Integral membrane protein localized to late Golgi vesicles along with the v-SNARE Tlg2p	Verified	chr4:655010-655441	655010-655441	99.2%	410.89	602.33	501.95	480.93	1456.81	845.14	506.61	491.44	1150.97	1.87	1.99	4.77	1.23	0.72	Matched[1074]
YDR101C	ARX1	Shuttling pre-60S factor; involved in the biogenesis of ribosomal large subunit biogenesis; interacts directly with Alb1; responsible for Tif6 recycling defects in absence of Rei1; associated with the ribosomal export complex	Verified	chr4:655683-657464	655683-657464	99.0%	305.63	151.40	176.91	129.85	15.31	3.40	228.51	153.38	9.36	0.84	0.62	0.04	-4.04	-3.73	Matched[1075]
YDR102C		Dubious open reading frame; homozygous diploid deletion strain exhibits high budding index	Dubious	chr4:657645-657977	657645-657977	98.9%	15.18	15.18	12.14	9.11	27.32	12.14	15.18	10.63	19.73	0.06	0.04	0.08	0.89	-0.77	
YDR103W	STE5	"Pheromone-response scaffold protein; binds kinases Ste11p, Ste7p, and Fus3p to form a MAPK cascade complex that interacts with the plasma membrane, via a PH (pleckstrin homology) and PM/NLS domain, and with Ste4p-Ste18p, during signaling"	Verified	chr4:658347-661100	658347-661100	99.0%	113.75	115.22	92.83	91.37	113.02	97.97	114.48	92.10	105.49	0.42	0.37	0.44	0.20	0.60	Matched[1076]
YDR104C	SPO71	"Meiosis-specific protein of unknown function, required for spore wall formation during sporulation; dispensable for both nuclear divisions during meiosis"	Verified	chr4:661170-664907	661170-664907	99.1%	36.70	40.75	28.06	30.76	32.92	23.21	38.72	29.41	28.06	0.14	0.12	0.12	-0.07	0.27	Frag>80[1077,1078]
YDR105C	TMS1	"Vacuolar membrane protein of unknown function that is conserved in mammals; predicted to contain eleven transmembrane helices; interacts with Pdr5p, a protein involved in multidrug resistance"	Verified	chr4:665346-666767	665346-666767	99.0%	207.32	226.49	206.61	166.85	257.73	184.60	216.90	186.73	221.16	0.80	0.76	0.92	0.24	0.48	Frag>80[1078,1079]
YDR106W	ARP10	"Component of the dynactin complex, localized to the pointed end of the Arp1p filament; may regulate membrane association of the complex"	Verified	chr4:667001-667855	667001-667855	98.7%	14.22	23.71	13.04	9.48	13.04	15.41	18.96	11.26	14.22	0.07	0.05	0.06	0.34	-0.37	Overlap[1079]
YDR107C		Multispanning membrane protein of unknown function	Uncharacterized	chr4:669013-671031	669013-671031	98.9%	97.61	138.16	90.10	77.09	76.09	78.59	117.89	83.60	77.34	0.44	0.34	0.32	-0.11	0.22	Matched[1080]
YDR108W	GSG1	"Subunit of TRAPP (transport protein particle), a multi-subunit complex involved in targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment; protein has late meiotic role, following DNA replication"	Verified	chr4:671266-673362	671266-673362	98.9%	64.14	72.83	59.32	47.26	62.21	45.33	68.48	53.29	53.77	0.25	0.22	0.22	0.01	0.49	Covered/w/another[1081]
YDR109C		Putative kinase	Uncharacterized	chr4:673517-675664	673517-675664	99.2%	57.75	62.91	55.40	44.60	66.67	66.67	60.33	50.00	66.67	0.22	0.20	0.28	0.42	1.00	Covered/w/another[1081]
YDR110W	FOB1	Nucleolar protein required for DNA replication fork blocking and recombinational hotspot activities; binds to the replication fork barrier site in the rDNA region; related to retroviral integrases	Verified	chr4:676099-677799	676099-677799	98.6%	107.28	76.29	74.50	63.17	44.10	24.44	91.78	68.84	34.27	0.34	0.28	0.14	-1.01	-1.23	Matched[1082]
YDR112W		"Hypothetical protein, null mutant displays increased levels of spontaneous Rad52 foci"	Dubious	chr4:679541-679849	679541-679849	99.3%	91.28	32.60	65.20	71.72	22.82	9.78	61.94	68.46	16.30	0.23	0.28	0.07	-2.07	-0.31	Covered/w/another[1083]
YDR111C	ALT2	Putative alanine transaminase (glutamic pyruvic transaminase)	Uncharacterized	chr4:678238-679761	678238-679761	99.0%	135.92	86.86	116.03	88.18	53.71	38.46	111.39	102.11	46.08	0.41	0.41	0.19	-1.15	-1.08	Matched[1083]
YDR113C	PDS1	"Securin that inhibits anaphase by binding separin Esp1p, also blocks cyclin destruction and mitotic exit, essential for cell cycle arrest in mitosis in the presence of DNA damage or aberrant mitotic spindles; also present in meiotic nuclei"	Verified	chr4:680493-681614	680493-681614	99.1%	104.29	139.35	133.05	124.96	133.05	80.91	121.82	129.01	106.98	0.45	0.52	0.44	-0.27	0.05	Frag>80[1084,1085]
YDR115W		"Putative mitochondrial ribosomal protein of the large subunit, has similarity to E. coli L34 ribosomal protein; required for respiratory growth, as are most mitochondrial ribosomal proteins"	Uncharacterized	chr4:682172-682489	682172-682489	98.7%	449.10	484.14	500.07	410.88	818.58	449.10	466.62	455.47	633.84	1.72	1.85	2.63	0.48	-0.44	Matched[1086]
YDR114C		Putative protein of unknown function; deletion mutant exhibits poor growth at elevated pH and calcium	Uncharacterized	chr4:681921-682223	681921-682223	97.9%	84.29	84.29	118.01	97.78	236.02	111.27	84.29	107.90	173.64	0.31	0.44	0.72	0.69	-0.77	Frag<80[1086]
YDR116C	MRPL1	Mitochondrial ribosomal protein of the large subunit	Verified	chr4:682721-683578	682721-683578	99.1%	271.66	256.37	295.18	303.41	376.32	266.95	264.01	299.29	321.64	0.97	1.21	1.33	0.10	0.31	Matched[1087]
YDR117C	TMA64	Protein of unknown function that associates with ribosomes; has a putative RNA binding domain	Verified	chr4:683943-685640	683943-685640	99.1%	177.65	185.96	188.34	188.34	152.69	96.25	181.80	188.34	124.47	0.67	0.76	0.52	-0.60	-0.17	Matched[1089]
YDR118W	APC4	"Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition"	Verified	chr4:685879-687837	685879-687837	98.8%	67.16	64.06	54.76	47.53	72.32	42.88	65.61	51.14	57.60	0.24	0.21	0.24	0.17	-0.25	Covered/w/another[1090]
YDR118W-A		Dubious open reading frame; identified using a combination of expression profiling and mass spectrometry	Dubious	chr4:687765-687881	687765-687881	98.9%	112.31	120.95	60.48	51.84	120.95	60.48	116.63	56.16	90.71	0.43	0.23	0.38	0.69	NaN	Covered/w/another[1090]
YDR119W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to vacuolar membrane; YDR119W is not an essential gene	Uncharacterized	chr4:688224-690530	688224-690530	98.9%	315.01	267.69	260.68	248.85	127.49	110.85	291.35	254.77	119.17	1.08	1.03	0.49	-1.10	-0.93	Covered/w/another[1090]
YDR119W-A		Putative protein of unknown function	Uncharacterized	chr4:691011-691211	691011-691211	98.2%	81.06	263.46	359.72	567.45	2659.91	1099.43	172.26	463.58	1879.67	0.64	1.88	7.79	2.02	NaN	Matched[1091]
YDR120C	TRM1	"tRNA methyltransferase, localizes to both the nucleus and mitochondrion to produce the modified base N2,N2-dimethylguanosine in tRNAs in both compartments"	Verified	chr4:691546-693258	691546-693258	99.1%	276.38	136.13	176.20	118.45	19.45	5.30	206.25	147.32	12.38	0.76	0.60	0.05	-3.57	-2.41	Matched[1092]
YDR121W	DPB4	Shared subunit of DNA polymerase (II) epsilon and of ISW2/yCHRAC chromatin accessibility complex; involved in both chromosomal DNA replication and in inheritance of telomeric silencing	Verified	chr4:693582-694172	693582-694172	98.0%	212.42	221.05	181.33	174.43	67.35	27.63	216.74	177.88	47.49	0.80	0.72	0.20	-1.91	-1.35	Matched[1093]
YDR122W	KIN1	Serine/threonine protein kinase involved in regulation of exocytosis; localizes to the cytoplasmic face of the plasma membrane; closely related to Kin2p	Verified	chr4:694697-697891	694697-697891	98.6%	164.50	194.35	194.35	212.77	308.36	355.04	179.43	203.56	331.70	0.66	0.83	1.37	0.70	1.30	Matched[1094]
YDR123C	INO2	"Component of the heteromeric Ino2p/Ino4p basic helix-loop-helix transcription activator that binds inositol/choline-responsive elements (ICREs), required for derepression of phospholipid biosynthetic genes in response to inositol depletion"	Verified	chr4:698551-699465	698551-699465	98.8%	56.41	45.35	42.03	33.18	68.58	59.73	50.88	37.61	64.15	0.19	0.15	0.27	0.77	0.77	Matched[1095]
YDR124W		Putative protein of unknown function; non-essential gene; expression is strongly induced by alpha factor	Uncharacterized	chr4:700312-701286	700312-701286	98.7%	62.35	68.59	51.96	42.61	120.55	84.18	65.47	47.29	102.36	0.24	0.19	0.42	1.11	0.52	Covered/w/another[1096]
YDR125C	ECM18	"Protein of unknown function, similar to Rlp24p"	Verified	chr4:701394-702755	701394-702755	99.3%	28.83	36.97	26.62	31.79	73.20	68.76	32.90	29.20	70.98	0.12	0.12	0.29	1.28	1.39	Covered/w/another[1096]
YDR126W	SWF1	"Palmitoyltransferase that acts on the SNAREs Snc1p, Syn8p, Tlg1p and likely on all SNAREs; member of a family of putative palmitoyltransferases containing an Asp-His-His-Cys-cysteine rich (DHHC-CRD) domain; may have a role in vacuole fusion"	Verified	chr4:703231-704241	703231-704241	99.0%	57.93	69.92	49.94	24.97	18.98	6.99	63.93	37.46	12.98	0.24	0.15	0.05	-1.53	-1.49	Covered[1097]
YDR127W	ARO1	"Pentafunctional arom protein, catalyzes steps 2 through 6 in the biosynthesis of chorismate, which is a precursor to aromatic amino acids"	Verified	chr4:704481-709247	704481-709247	98.8%	298.24	402.03	270.00	243.26	86.82	97.86	350.13	256.63	92.34	1.29	1.04	0.38	-1.47	-0.44	Frag<80[1098]
YDR128W		Putative protein of unknown function	Uncharacterized	chr4:709546-712992	709546-712992	98.6%	127.04	112.04	96.46	99.69	60.29	62.34	119.54	98.08	61.32	0.44	0.40	0.25	-0.68	-0.21	Matched[1099]
YDR129C	SAC6	"Fimbrin, actin-bundling protein; cooperates with Scp1p (calponin/transgelin) in the organization and maintenance of the actin cytoskeleton"	Verified	chr4:713337-715376	713337-715244,715356-715376	99.1%	498.82	451.24	618.04	602.88	1164.97	1161.31	475.03	610.46	1163.14	1.75	2.48	4.82	0.93	1.36	Matched[1100]
YDR130C	FIN1	"Spindle pole body-related intermediate filament protein, forms cell cycle-specific filaments between spindle pole bodies in mother and daughter cells, able to self-assemble, expression induced during S/G2, localization cell-cycle dependent"	Verified	chr4:715744-716619	715744-716619	99.3%	133.34	116.10	117.25	97.71	157.48	106.90	124.72	107.48	132.19	0.46	0.44	0.55	0.30	0.78	Covered/w/another[1101]
YDR131C		"F-box protein, substrate-specific adaptor subunit that recruits substrates to a core ubiquitination complex"	Uncharacterized	chr4:716787-718457	716787-718457	99.1%	54.33	56.74	53.73	54.93	93.57	63.38	55.54	54.33	78.47	0.21	0.22	0.33	0.53	0.66	Covered/w/another[1101]
YDR132C		Putative protein of unknown function	Uncharacterized	chr4:718813-720300	718813-720300	99.1%	55.62	64.44	36.63	63.08	48.84	37.30	60.03	49.85	43.07	0.22	0.20	0.18	-0.21	-0.83	Matched[1102]
YDR133C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps YDR134C"	Dubious	chr4:720959-721294	720959-721294	96.1%	6873.52	10256.07	10067.11	8806.40	17776.97	8831.18	8564.79	9436.76	13304.08	31.62	38.31	55.12	0.50	-1.79	Matched[1104]
YDR135C	YCF1	"Vacuolar glutathione S-conjugate transporter of the ATP-binding cassette family, has a role in detoxifying metals such as cadmium, mercury, and arsenite; also transports unconjugated bilirubin; similar to human cystic fibrosis protein CFTR"	Verified	chr4:723001-727548	723001-727548	99.1%	225.34	185.20	219.79	160.80	188.52	121.99	205.27	190.30	155.25	0.76	0.77	0.64	-0.29	-0.95	Matched[1106]
YDR137W	RGP1	Subunit of a Golgi membrane exchange factor (Ric1p-Rgp1p) that catalyzes nucleotide exchange on Ypt6p	Verified	chr4:728256-730247	728256-730247	98.8%	96.08	84.39	90.49	73.71	95.06	57.95	90.23	82.10	76.51	0.33	0.33	0.32	-0.10	-0.04	Matched[1107]
YDR136C	VPS61	"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; 4% of ORF overlaps the verified gene RGP1; deletion causes a vacuolar protein sorting defect"	Dubious	chr4:727708-728280	727708-728280	98.9%	10.59	14.12	10.59	7.06	10.59	5.30	12.36	8.83	7.94	0.05	0.04	0.03	-0.15	0.11	Overlap[1107]
YDR138W	HPR1	"Subunit of THO/TREX complexes that couple transcription elongation with mitotic recombination and with mRNA metabolism and export, subunit of an RNA Pol II complex; regulates lifespan; involved in telomere maintenance; similar to Top1p"	Verified	chr4:730575-732833	730575-732833	98.8%	100.32	88.67	74.79	68.52	39.86	20.15	94.50	71.66	30.01	0.35	0.29	0.12	-1.26	-1.69	Matched[1108]
YDR139C	RUB1	"Ubiquitin-like protein with similarity to mammalian NEDD8; conjugation (neddylation) substrates include the cullins Cdc53p, Rtt101p, and Cul3p; activated by Ula1p and Uba3p (E1 enzyme pair); conjugation mediated by Ubc12p (E2 enzyme)"	Verified	chr4:733615-733921	733615-733699,733773-733921	99.1%	607.98	767.52	500.18	577.79	845.13	431.19	687.75	538.99	638.16	2.54	2.19	2.64	0.24	-0.44	Matched[1109]
YDR140W	MTQ2	S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family; methylates release factor eRF1 (Sup45p) in vitro; is not an essential gene; similar to E.coli PrmC	Verified	chr4:734135-734800	734135-734800	98.7%	159.75	159.75	153.66	108.02	130.84	97.37	159.75	130.84	114.10	0.59	0.53	0.47	-0.20	0.18	Matched[1110]
YDR141C	DOP1	"Protein of unknown function, essential for viability, involved in establishing cellular polarity and morphogenesis; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr4:734898-739994	734898-739994	99.1%	92.21	98.94	76.98	82.91	89.64	100.33	95.58	79.95	94.98	0.35	0.32	0.39	0.25	0.66	Frag>80[1111]
YDR142C	PEX7	Peroxisomal signal receptor for the N-terminal nonapeptide signal (PTS2) of peroxisomal matrix proteins; WD repeat protein; defects in human homolog cause lethal rhizomelic chondrodysplasia punctata (RCDP)	Verified	chr4:740470-741597	740470-741597	99.1%	86.78	84.99	72.46	76.04	103.78	74.25	85.88	74.25	89.01	0.32	0.30	0.37	0.26	0.40	Matched[1112]
YDR143C	SAN1	"Ubiquitin-protein ligase, involved in the proteasome-dependent degradation of aberrant nuclear proteins; san1 mutations suppress sir4, spt16, and cdc68 mutations, suggesting a role in chromatin silencing"	Verified	chr4:742039-743871	742039-743871	98.7%	158.67	153.69	128.26	86.80	90.11	68.55	156.18	107.53	79.33	0.58	0.44	0.33	-0.44	0.26	Covered/w/another[1113]
YDR144C	MKC7	GPI-anchored aspartyl protease (yapsin) involved in protein processing; shares functions with Yap3p and Kex2p	Verified	chr4:744308-746098	744308-746098	98.8%	174.65	113.04	153.74	114.17	39.56	31.65	143.85	133.96	35.61	0.53	0.54	0.15	-1.91	-1.39	Covered/w/another[1113]
YDR145W	TAF12	"Subunit (61/68 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation and in chromatin modification, similar to histone H2A"	Verified	chr4:746735-748354	746735-748354	96.2%	314.56	277.33	270.91	268.98	256.15	233.68	295.95	269.95	244.91	1.09	1.10	1.01	-0.14	0.17	Covered/w/another[1114]
YDR146C	SWI5	Transcription factor that activates transcription of genes expressed at the M/G1 phase boundary and in G1 phase; localization to the nucleus occurs during G1 and appears to be regulated by phosphorylation by Cdc28p kinase	Verified	chr4:748610-750739	748610-750739	99.1%	197.94	255.24	224.94	195.10	193.68	161.48	226.59	210.02	177.58	0.84	0.85	0.74	-0.24	-0.08	Covered/w/another[1114]
YDR147W	EKI1	"Ethanolamine kinase, primarily responsible for phosphatidylethanolamine synthesis via the CDP-ethanolamine pathway; also exhibits choline kinase activity"	Verified	chr4:751628-753232	751628-753232	98.9%	108.37	134.84	96.40	80.02	74.98	47.26	121.60	88.21	61.12	0.45	0.36	0.25	-0.53	-0.04	Matched[1115]
YDR148C	KGD2	"Dihydrolipoyl transsuccinylase, component of the mitochondrial alpha-ketoglutarate dehydrogenase complex, which catalyzes the oxidative decarboxylation of alpha-ketoglutarate to succinyl-CoA in the TCA cycle; phosphorylated"	Verified	chr4:753672-755063	753672-755063	98.9%	471.39	591.96	615.92	647.16	547.65	583.97	531.67	631.54	565.81	1.96	2.56	2.34	-0.16	0.29	Frag>80[1116,1117]
YDR150W	NUM1	"Protein required for nuclear migration, localizes to the mother cell cortex and the bud tip; may mediate interactions of dynein and cytoplasmic microtubules with the cell cortex"	Verified	chr4:755625-763871	755625-763871	72.4%	141.47	142.14	129.58	129.75	93.42	160.89	141.81	129.67	127.16	0.52	0.53	0.53	-0.03	0.58	Frag<80[1118,1119]
YDR149C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:755552-756259	755552-756259	98.4%	53.13	44.51	31.59	47.38	27.28	80.41	48.82	39.49	53.84	0.18	0.16	0.22	0.45	0.13	Covered[1118]
YDR151C	CTH1	"Member of the CCCH zinc finger family; has similarity to mammalian Tis11 protein, which activates transcription and also has a role in mRNA degradation; may function with Tis11p in iron homeostasis"	Verified	chr4:764175-765152	764175-765152	98.9%	164.36	145.75	161.25	139.55	485.83	457.92	155.05	150.40	471.88	0.57	0.61	1.96	1.65	2.03	Covered[1120]
YDR152W	GIR2	"Highly-acidic cytoplasmic RWD domain-containing protein of unknown function, sensitive to proteolysis, N-terminal region has high content of acidic amino acid residues, putative IUP (intrinsically unstructured protein)"	Verified	chr4:765703-766500	765703-766500	98.3%	367.31	288.23	330.32	266.55	179.83	114.78	327.77	298.44	147.31	1.21	1.21	0.61	-1.02	-0.82	Frag>80[1121,1122]
YDR153C	ENT5	"Protein containing an N-terminal epsin-like domain involved in clathrin recruitment and traffic between the Golgi and endosomes; associates with the clathrin adaptor Gga2p, clathrin adaptor complex AP-1, and clathrin"	Verified	chr4:766733-767968	766733-767968	99.1%	186.98	174.73	175.55	181.26	221.27	165.75	180.85	178.40	193.51	0.67	0.72	0.80	0.12	0.50	Matched[1123]
YDR154C		"Dubious open reading frame, null mutant exhibits synthetic phenotype with alpha-synuclein"	Dubious	chr4:768400-768750	768400-768750	94.8%	9719.01	10707.74	9974.46	8850.49	22271.98	13896.32	10213.37	9412.47	18084.15	37.70	38.21	74.93	0.94	-0.46	Matched[1124]
YDR155C	CPR1	"Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds the drug cyclosporin A"	Verified	chr4:768509-768997	768509-768997	95.7%	9976.33	10822.11	10352.23	9113.46	21795.85	14839.55	10399.22	9732.85	18317.70	38.39	39.51	75.90	0.91	-0.71	Matched[1124]
YDR156W	RPA14	RNA polymerase I subunit A14	Verified	chr4:769522-769935	769522-769935	98.5%	284.34	254.93	269.64	210.81	171.59	112.76	269.64	240.22	142.17	1.00	0.98	0.59	-0.76	-0.35	Frag>80[1125,1126]
YDR157W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:769928-770329	769928-770329	99.4%	70.04	72.55	60.04	60.04	40.03	25.02	71.29	60.04	32.52	0.26	0.24	0.13	-0.88	-0.45	Frag<80[1125,1126]
YDR158W	HOM2	"Aspartic beta semi-aldehyde dehydrogenase, catalyzes the second step in the common pathway for methionine and threonine biosynthesis; expression regulated by Gcn4p and the general control of amino acid synthesis"	Verified	chr4:770354-771451	770354-771451	98.8%	1714.35	2404.15	1611.99	1737.41	1256.95	969.22	2059.25	1674.70	1113.08	7.60	6.80	4.61	-0.59	-0.29	Matched[1127]
YDR159W	SAC3	"Nuclear pore-associated protein, forms a complex with Thp1p that is involved in transcription and in mRNA export from the nucleus"	Verified	chr4:771874-775779	771874-775779	98.9%	136.42	126.07	96.56	84.39	85.17	90.86	131.25	90.47	88.01	0.48	0.37	0.36	-0.04	0.24	Matched[1128]
YDR160W	SSY1	"Component of the SPS plasma membrane amino acid sensor system (Ssy1p-Ptr3p-Ssy5p), which senses external amino acid concentration and transmits intracellular signals that result in regulation of expression of amino acid permease genes"	Verified	chr4:776160-778718	776160-778718	98.8%	70.38	76.70	76.70	64.84	60.10	66.42	73.54	70.77	63.26	0.27	0.29	0.26	-0.16	0.30	Matched[1129]
YDR161W		Putative protein of unknown function; non-essential gene; proposed function in rRNA and ribosome biosynthesis based on transcriptional co-regulation	Uncharacterized	chr4:779040-780203	779040-780203	98.5%	294.74	182.25	220.62	158.70	15.70	3.49	238.49	189.66	9.59	0.88	0.77	0.04	-4.31	-3.09	Matched[1130]
YDR162C	NBP2	"Protein involved in the HOG (high osmolarity glycerol) pathway, negatively regulates Hog1p by recruitment of phosphatase Ptc1p the Pbs2p-Hog1p complex, found in the nucleus and cytoplasm, contains an SH3 domain that binds Pbs2p"	Verified	chr4:780387-781097	780387-781097	99.4%	121.63	103.24	123.04	117.38	189.51	124.45	112.43	120.21	156.98	0.42	0.49	0.65	0.39	0.28	Matched[1131]
YDR163W	CWC15	"Non-essential protein involved in pre-mRNA splicing, component of a complex containing Cef1p; has similarity to S. pombe Cwf15p"	Verified	chr4:781420-781947	781420-781947	98.0%	191.29	210.61	154.58	152.64	241.53	183.56	200.95	153.61	212.54	0.74	0.62	0.88	0.47	0.28	Covered/w/another[1132]
YDR164C	SEC1	Sm-like protein involved in docking and fusion of exocytic vesicles through binding to assembled SNARE complexes at the membrane; localization to sites of secretion (bud neck and bud tip) is dependent on SNARE function	Verified	chr4:782038-784212	782038-784212	99.2%	141.87	148.36	145.11	140.48	92.72	90.41	145.11	142.79	91.56	0.54	0.58	0.38	-0.64	-0.20	Matched[1132]
YDR165W	TRM82	Subunit of a tRNA methyltransferase complex composed of Trm8p and Trm82p that catalyzes 7-methylguanosine modification of tRNA	Verified	chr4:784868-786202	784868-786202	99.0%	295.75	193.64	220.87	154.31	32.53	7.56	244.70	187.59	20.04	0.90	0.76	0.08	-3.23	-2.36	Matched[1133]
YDR166C	SEC5	"Essential 107kDa subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, and Exo84p), which has the essential function of mediating polarized targeting of secretory vesicles to active sites of exocytosis"	Verified	chr4:786303-789218	786303-789218	99.3%	101.87	112.23	104.29	92.55	111.19	105.67	107.05	98.42	108.43	0.40	0.40	0.45	0.14	0.59	Matched[1134]
YDR167W	TAF10	"Subunit (145 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation and in chromatin modification"	Verified	chr4:789446-790066	789446-790066	98.2%	326.47	280.54	277.26	318.27	241.16	154.21	303.51	297.76	197.69	1.12	1.21	0.82	-0.59	-0.93	Matched[1135]
YDR168W	CDC37	Essential Hsp90p co-chaperone; necessary for passage through the START phase of the cell cycle; stabilizes protein kinase nascent chains and participates along with Hsp90p in their folding	Verified	chr4:790325-791845	790325-791845	98.7%	412.45	379.80	362.48	388.46	810.24	569.03	396.12	375.47	689.64	1.46	1.52	2.86	0.88	0.69	Matched[1136]
YDR169C	STB3	Protein that binds Sin3p in a two-hybrid assay	Verified	chr4:792345-793886	792345-793886	98.9%	209.84	258.37	224.92	206.56	335.09	363.94	234.10	215.74	349.52	0.86	0.88	1.45	0.70	1.12	Matched[1138]
YDR169C-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr4:794571-794720	794571-794720	98.8%	13.50	27.00	20.25	0.00	6.75	13.50	20.25	10.13	10.13	0.07	0.04	0.04	0.00	NaN	
YDR170C	SEC7	"Guanine nucleotide exchange factor (GEF) for ADP ribosylation factors involved in proliferation of the Golgi, intra-Golgi transport and ER-to-Golgi transport; found in the cytoplasm and on Golgi-associated coated vesicles"	Verified	chr4:796190-802219	796190-802219	98.5%	253.11	251.09	238.64	224.33	113.60	189.16	252.10	231.49	151.38	0.93	0.94	0.63	-0.61	-0.19	Frag>80[1140,1141]
YDR171W	HSP42	Small heat shock protein (sHSP) with chaperone activity; forms barrel-shaped oligomers that suppress unfolded protein aggregation; involved in cytoskeleton reorganization after heat shock	Verified	chr4:806618-807745	806618-807745	98.4%	149.54	316.19	390.06	567.53	15191.65	12123.41	232.87	478.79	13657.53	0.86	1.94	56.59	4.83	3.40	Frag>80[1143,1144,1145]
YDR172W	SUP35	"Translation termination factor eRF3; altered protein conformation creates the [PSI(+)] prion, a dominant cytoplasmically inherited protein aggregate that alters translational fidelity and creates a nonsense suppressor phenotype"	Verified	chr4:808321-810378	808321-810378	98.6%	603.50	466.05	552.26	526.64	221.69	295.59	534.77	539.45	258.64	1.97	2.19	1.07	-1.06	-0.23	Matched[1146]
YDR173C	ARG82	"Inositol polyphosphate multikinase (IPMK), sequentially phosphorylates Ins(1,4,5)P3 to form Ins(1,3,4,5,6)P5; putative nuclear lipid inositol PI3-kinase; regulates arginine-, phosphate-, and nitrogen-responsive genes"	Verified	chr4:810562-811629	810562-811629	98.6%	55.10	79.80	61.75	47.50	145.35	61.75	67.45	54.62	103.55	0.25	0.22	0.43	0.92	0.32	Matched[1147]
YDR174W	HMO1	"Chromatin associated high mobility group (HMG) family member involved in genome maintenance; rDNA-binding component of the Pol I transcription system; associates with a 5'-3' DNA helicase and Fpr1p, a prolyl isomerase"	Verified	chr4:812107-812847	812107-812847	97.6%	1288.33	1147.33	1249.63	998.04	1429.33	934.45	1217.83	1123.83	1181.89	4.50	4.56	4.90	0.07	-0.00	Frag>80[1148,1149]
YDR175C	RSM24	Mitochondrial ribosomal protein of the small subunit	Verified	chr4:813190-814149	813190-814149	99.3%	224.45	219.20	228.64	230.74	220.25	125.86	221.82	229.69	173.05	0.82	0.93	0.72	-0.41	-0.29	Matched[1150]
YDR176W	NGG1	"Transcriptional regulator involved in glucose repression of Gal4p-regulated genes; component of transcriptional adaptor and histone acetyltransferase complexes, the ADA complex, the SAGA complex, and the SLIK complex"	Verified	chr4:814449-816557	814449-816557	98.5%	207.49	210.38	178.61	172.35	167.05	136.72	208.94	175.48	151.89	0.77	0.71	0.63	-0.21	-0.03	Matched[1151]
YDR177W	UBC1	Ubiquitin-conjugating enzyme that mediates selective degradation of short-lived and abnormal proteins; plays a role in vesicle biogenesis and ER-associated protein degradation (ERAD); component of the cellular stress response	Verified	chr4:816875-817522	816875-817522	98.7%	676.78	561.12	639.27	448.58	908.11	426.70	618.95	543.93	667.40	2.28	2.21	2.77	0.30	0.09	Matched[1152]
YDR178W	SDH4	"Membrane anchor subunit of succinate dehydrogenase (Sdh1p, Sdh2p, Sdh3p, Sdh4p), which couples the oxidation of succinate to the transfer of electrons to ubiquinone"	Verified	chr4:817947-818492	817947-818492	98.8%	470.62	635.53	631.82	839.34	1563.81	1172.86	553.08	735.58	1368.33	2.04	2.99	5.67	0.90	0.83	Matched[1153]
YDR179C	CSN9	"Subunit of the Cop9 signalosome, which is required for deneddylation, or removal of the ubiquitin-like protein Rub1p from Cdc53p (cullin); involved in adaptation to pheromone signaling"	Verified	chr4:818705-819193	818705-819193	99.7%	106.70	57.46	61.56	61.56	98.50	61.56	82.08	61.56	80.03	0.30	0.25	0.33	0.38	-0.38	Matched[1154]
YDR179W-A		Putative protein of unknown function	Uncharacterized	chr4:819430-820821	819430-820821	99.1%	70.32	52.92	52.19	40.60	45.67	27.55	61.62	46.40	36.61	0.23	0.19	0.15	-0.34	-0.93	Matched[1155]
YDR180W	SCC2	"Subunit of cohesin loading factor (Scc2p-Scc4p), a complex required for the loading of cohesin complexes onto chromosomes; involved in establishing sister chromatid cohesion during DSB repair via histone H2AX"	Verified	chr4:821292-825773	821292-825773	99.0%	50.69	37.39	33.57	22.30	19.15	16.44	44.04	27.93	17.80	0.16	0.11	0.07	-0.65	-0.68	Frag<80[1156]
YDR181C	SAS4	"Subunit of the SAS complex (Sas2p, Sas4p, Sas5p), which  acetylates free histones and nucleosomes and regulates transcriptional silencing; required for the HAT activity of Sas2p"	Verified	chr4:825907-827352	825907-827352	99.4%	84.92	94.66	105.80	105.10	123.20	77.96	89.79	105.45	100.58	0.33	0.43	0.42	-0.07	0.20	Matched[1157]
YDR182W	CDC1	"Putative membrane protein of unknown function involved in Mn2+ homeostasis; mutants display actin and general growth defects, heterogeneous cell cycle arrests, and pleiotropic defects in cell cycle progression and organelle distribution"	Verified	chr4:827579-829054	827579-829054	98.8%	261.19	282.44	270.79	257.76	279.01	191.27	271.82	264.27	235.14	1.00	1.07	0.97	-0.17	0.43	Matched[1158]
YDR182W-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr4:829148-829351	829148-829351	96.6%	20.30	25.38	20.30	15.23	60.90	10.15	22.84	17.76	35.53	0.08	0.07	0.15	1.00	NaN	Matched[1159]
YDR183W	PLP1	"Protein with a possible role in folding of beta-tubulin; has weak similarity to phosducins, which are G-protein regulators"	Verified	chr4:829582-830274	829582-830274	98.6%	77.57	80.49	65.86	64.39	136.11	67.32	79.03	65.13	101.71	0.29	0.26	0.42	0.64	0.34	Covered/w/another[1160]
YDR183C-A		Dubious open reading frame unlikely to encode a functional protein; identified by fungal homology and RT-PCR	Dubious	chr4:830394-830651	830394-830651	99.2%	160.13	82.02	66.40	31.24	11.72	11.72	121.07	48.82	11.72	0.45	0.20	0.05	-2.06	NaN	Covered/w/another[1160]
YDR184C	ATC1	"Nuclear protein, possibly involved in regulation of cation stress responses and/or in the establishment of bipolar budding pattern"	Verified	chr4:830626-831510	830626-831510	99.2%	140.04	70.59	84.25	46.68	10.25	17.08	105.31	65.46	13.66	0.39	0.27	0.06	-2.26	-2.25	Covered/w/another[1160]
YDR185C		"Mitochondrial protein of unknown function; has similarity to Ups1p, which is involved in regulation of alternative topogenesis of the dynamin-related GTPase Mgm1p"	Uncharacterized	chr4:831931-832470	831931-832470	99.0%	121.65	71.12	95.45	65.50	56.14	44.92	96.38	80.47	50.53	0.36	0.33	0.21	-0.67	-0.68	Covered/w/another[1160]
YDR186C		"Putative protein of unknown function; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm"	Verified	chr4:832856-835489	832856-835489	98.5%	153.75	309.05	149.90	139.50	182.27	191.13	231.40	144.70	186.70	0.85	0.59	0.77	0.37	0.99	Matched[1161]
YDR188W	CCT6	"Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, essential protein that is required for the assembly of actin and tubulins in vivo; contains an ATP-binding motif"	Verified	chr4:836418-838058	836418-838058	98.3%	742.34	672.89	712.58	578.62	591.64	456.45	707.62	645.60	524.04	2.61	2.62	2.17	-0.30	0.09	Matched[1162]
YDR187C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified, essential ORF CCT6/YDR188W"	Dubious	chr4:836225-836743	836225-836743	97.9%	301.11	273.55	271.59	249.94	255.84	196.80	287.33	260.76	226.32	1.06	1.06	0.94	-0.20	0.07	Covered/w/another[1162]
YDR189W	SLY1	Hydrophilic protein involved in vesicle trafficking between the ER and Golgi; SM (Sec1/Munc-18) family protein that binds the tSNARE Sed5p and stimulates its assembly into a trans-SNARE membrane-protein complex	Verified	chr4:838389-840389	838389-840389	98.9%	256.10	246.00	260.14	229.33	219.73	216.20	251.05	244.74	217.97	0.93	0.99	0.90	-0.17	0.36	Covered/w/another[1163]
YDR190C	RVB1	Essential protein involved in transcription regulation; component of chromatin remodeling complexes; required for assembly and function of the INO80 complex; member of the RUVB-like protein family	Verified	chr4:840601-841992	840601-841992	99.3%	578.10	434.84	474.63	442.80	203.31	196.80	506.47	458.71	200.05	1.87	1.86	0.83	-1.20	-0.80	Covered/w/another[1163]
YDR191W	HST4	"Member of the Sir2 family of NAD(+)-dependent protein deacetylases; involved along with Hst3p in silencing at telomeres, cell cycle progression, radiation resistance, genomic stability and short-chain fatty acid metabolism"	Verified	chr4:842334-843446	842334-843446	98.8%	40.93	50.94	61.86	43.66	41.84	35.48	45.94	52.76	38.66	0.17	0.21	0.16	-0.45	0.16	Covered/w/another[1164]
YDR193W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:844551-844949	844551-844949	99.2%	32.86	42.97	42.97	30.33	48.03	25.28	37.91	36.65	36.65	0.14	0.15	0.15	0.00	-0.26	Covered/w/another[1164]
YDR192C	NUP42	"Subunit of the nuclear pore complex (NPC) that localizes exclusively to the cytoplasmic side; involved in RNA export, most likely at a terminal step; interacts with Gle1p"	Verified	chr4:843566-844858	843566-844858	98.8%	64.20	68.90	72.03	56.37	66.55	51.67	66.55	64.20	59.11	0.25	0.26	0.24	-0.12	0.57	Covered/w/another[1164]
YDR194C	MSS116	DEAD-box protein required for efficient splicing of mitochondrial Group I and II introns; non-polar RNA helicase that also facilities strand annealing	Verified	chr4:845949-847943	845949-847943	99.3%	588.85	480.27	512.09	476.74	341.90	239.88	534.56	494.41	290.89	1.97	2.01	1.21	-0.77	-0.99	Frag>80[1165,1166]
YDR194W-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr4:848068-848220	848068-848220	99.5%	6.57	0.00	0.00	0.00	0.00	0.00	3.29	0.00	0.00	0.01	0.00	0.00	NaN	NaN	
YDR195W	REF2	"RNA-binding protein involved in the cleavage step of mRNA 3'-end formation prior to polyadenylation, and in snoRNA maturation; part of holo-CPF subcomplex APT, which associates with 3'-ends of snoRNA- and mRNA-encoding genes"	Verified	chr4:848596-850197	848596-850197	98.9%	116.13	87.73	91.51	43.55	125.59	65.64	101.93	67.53	95.62	0.38	0.27	0.40	0.50	0.72	Matched[1167]
YDR196C		"Putative dephospho-CoA kinase (DPCK) that catalyzes the final step in Coenzyme A biosynthesis; essential for viability; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr4:850271-850996	850271-850996	99.5%	308.65	297.58	308.65	264.36	537.02	296.19	303.11	286.51	416.61	1.12	1.16	1.73	0.54	0.23	Matched[1168]
YDR197W	CBS2	"Mitochondrial translational activator of the COB mRNA; interacts with translating ribosomes, acts on the COB mRNA 5'-untranslated leader"	Verified	chr4:851225-852394	851225-852394	98.9%	103.68	124.42	116.64	82.95	224.65	158.98	114.05	99.79	191.81	0.42	0.41	0.79	0.94	0.69	Matched[1169]
YDR198C	RKM2	"Ribosomal protein lysine methyltransferase, responsible for epsilon-trimethylation of the lysine residue at position 10 of Rpl12Ap and Rpl12Bp"	Verified	chr4:852530-853969	852530-853969	99.2%	70.68	69.99	60.19	42.69	32.19	11.20	70.34	51.44	21.70	0.26	0.21	0.09	-1.25	-0.19	Matched[1170]
YDR199W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene VPS64; computationally predicted to have thiol-disulfide oxidoreductase activity"	Dubious	chr4:854172-854537	854172-854537	99.5%	159.32	200.53	167.56	109.88	381.82	217.01	179.92	138.72	299.42	0.66	0.56	1.24	1.11	-0.00	Covered/w/another[1171]
YDR200C	VPS64	"Cytoplasmic protein required for cytoplasm to vacuole targeting of proteins; forms a complex with Far3p, Far7p, Far10p, and Far11p that is involved in pheromone-induced cell cycle arrest; also localized to the endoplasmic reticulum membrane"	Verified	chr4:854276-856090	854276-856090	99.2%	127.14	137.13	129.36	106.04	214.86	173.22	132.13	117.70	194.04	0.49	0.48	0.80	0.72	0.71	Matched[1171]
YDR201W	SPC19	"Essential subunit of the Dam1 complex (aka DASH complex), couples kinetochores to the force produced by MT depolymerization thereby aiding in chromosome segregation; also localized to nuclear side of spindle pole body"	Verified	chr4:856314-856811	856314-856811	98.3%	206.37	181.85	169.59	161.42	275.84	177.76	194.11	165.50	226.80	0.72	0.67	0.94	0.45	0.17	Matched[1172]
YDR203W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:857679-857996	857679-857996	99.4%	69.63	110.77	85.45	94.95	227.88	196.23	90.20	90.20	212.05	0.33	0.37	0.88	1.23	0.76	Matched[1173]
YDR202C	RAV2	"Subunit of RAVE (Rav1p, Rav2p, Skp1p), a complex that associates with the V1 domain of the vacuolar membrane (H+)-ATPase (V-ATPase) and promotes assembly and reassembly of the holoenzyme"	Verified	chr4:856895-857950	856895-857950	99.2%	104.97	162.23	123.10	130.74	375.03	271.97	133.60	126.92	323.50	0.49	0.52	1.34	1.35	1.29	Matched[1173]
YDR204W	COQ4	"Protein with a role in ubiquinone (Coenzyme Q) biosynthesis, possibly functioning in stabilization of Coq7p; located on the matrix face of the mitochondrial inner membrane; component of a mitochondrial ubiquinone-synthesizing complex"	Verified	chr4:858134-859141	858134-859141	98.4%	162.30	241.94	206.65	188.51	623.99	509.07	202.12	197.58	566.53	0.75	0.80	2.35	1.52	1.86	Matched[1174]
YDR205W	MSC2	"Member of the cation diffusion facilitator family, localizes to the endoplasmic reticulum and nucleus; mutations affect the cellular distribution of zinc and also confer defects in meiotic recombination between homologous chromatids"	Verified	chr4:859343-861517	859343-861517	99.2%	72.78	75.56	71.85	60.72	54.70	37.55	74.17	66.29	46.12	0.27	0.27	0.19	-0.52	-0.07	Matched[1175]
YDR206W	EBS1	"Cytoplasmic protein of unknown function, involved in inhibition of translation; interacts with cap binding protein Cdc33; contains an RNA recognition motif and similarity to Est1p; mRNA abundance regulated by mRNA decay factors"	Verified	chr4:862051-864705	862051-864705	98.9%	174.41	170.22	133.66	118.05	73.88	61.31	172.31	125.85	67.59	0.64	0.51	0.28	-0.90	-0.38	Matched[1176]
YDR207C	UME6	"Key transcriptional regulator of early meiotic genes, binds URS1 upstream regulatory sequence, couples metabolic responses to nutritional cues with initiation and progression of meiosis, forms complex with Ime1p, and also with Sin3p-Rpd3p"	Verified	chr4:865009-867519	865009-867519	98.5%	147.92	165.70	126.50	124.48	128.52	122.05	156.81	125.49	125.29	0.58	0.51	0.52	-0.00	0.13	Matched[1177]
YDR208W	MSS4	"Phosphatidylinositol-4-phosphate 5-kinase, involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation"	Verified	chr4:868221-870560	868221-870560	98.9%	183.61	184.91	172.81	174.97	264.40	270.88	184.26	173.89	267.64	0.68	0.71	1.11	0.62	1.10	Matched[1178]
YDR210W		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery	Uncharacterized	chr4:871071-871298	871071-871298	96.9%	705.88	674.21	723.98	556.56	1248.87	660.63	690.05	640.27	954.75	2.55	2.60	3.96	0.58	0.55	Matched[1180]
YDR209C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized gene YDR210W."	Dubious	chr4:871033-871446	871033-871446	97.9%	697.90	675.71	638.72	547.47	1228.11	653.51	686.81	593.09	940.81	2.54	2.41	3.90	0.67	0.15	Matched[1180]
YDR211W	GCD6	"Catalytic epsilon subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression"	Verified	chr4:884724-886862	884724-886862	98.8%	327.95	256.02	285.83	234.72	103.16	75.24	291.98	260.28	89.20	1.08	1.06	0.37	-1.54	-1.08	Matched[1182]
YDR212W	TCP1	"Alpha subunit of chaperonin-containing T-complex, which mediates protein folding in the cytosol; involved in maintenance of actin cytoskeleton; homolog to Drosophila melanogaster and mouse tailless complex polypeptide"	Verified	chr4:887229-888908	887229-888908	98.8%	550.25	430.31	473.11	439.96	405.60	271.81	490.28	456.53	338.71	1.81	1.85	1.40	-0.43	-0.05	Matched[1183]
YDR213W	UPC2	"Sterol regulatory element binding protein, induces transcription of sterol transport and biosynthetic genes; involved in the anaerobic induction of DAN/TIR mannoproteins and seripauperins; binucleate zinc cluster protein; Ecm22p homolog"	Verified	chr4:889748-892489	889748-892489	98.3%	60.85	112.05	39.33	37.47	40.07	53.80	86.45	38.40	46.93	0.32	0.16	0.19	0.29	0.77	Matched[1184]
YDR214W	AHA1	Co-chaperone that binds to Hsp82p and activates its ATPase activity; similar to Hch1p; expression is regulated by stresses such as heat shock	Verified	chr4:892872-893924	892872-893924	98.5%	342.17	340.24	373.01	298.80	6861.69	4428.92	341.20	335.90	5645.30	1.26	1.36	23.39	4.07	3.18	Matched[1185]
YDR215C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; null mutant displays elevated sensitivity to expression of a mutant huntingtin fragment or of alpha-synuclein"	Dubious	chr4:894115-894498	894115-894498	97.9%	18.61	18.61	2.66	10.63	18.61	18.61	18.61	6.65	18.61	0.07	0.03	0.08	1.49	1.80	Frag<80[1186]
YDR216W	ADR1	"Carbon source-responsive zinc-finger transcription factor, required for transcription of the glucose-repressed gene ADH2, of peroxisomal protein genes, and of genes required for ethanol, glycerol, and fatty acid utilization"	Verified	chr4:895031-899002	895031-899002	99.1%	42.19	32.53	96.83	98.61	103.69	163.42	37.36	97.72	133.55	0.14	0.40	0.55	0.45	1.17	Matched[1187]
YDR217C	RAD9	"DNA damage-dependent checkpoint protein, required for cell-cycle arrest in G1/S, intra-S, and G2/M; transmits checkpoint signal by activating Rad53p and Chk1p; hyperphosphorylated by Mec1p and Tel1p; potential Cdc28p substrate"	Verified	chr4:899547-903476	899547-903476	99.3%	84.55	59.70	50.73	49.19	38.43	35.61	72.12	49.96	37.02	0.27	0.20	0.15	-0.43	-0.06	Frag>80[1188]
YDR218C	SPR28	Sporulation-specific homolog of the yeast CDC3/10/11/12 family of bud neck microfilament genes; meiotic septin expressed at high levels during meiotic divisions and ascospore formation	Verified	chr4:903777-905048	903777-905048	99.4%	3.16	0.00	0.79	0.00	4.74	3.16	1.58	0.40	3.95	0.01	0.00	0.02	3.32	2.39	
YDR219C	MFB1	Mitochondria-associated F-box protein involved in maintenance of normal mitochondrial morphology; interacts with Skp1p through the F-box motif; preferentially localizes to the mother cell during budding	Verified	chr4:905451-906848	905451-906848	99.2%	131.89	133.33	115.32	121.80	209.01	176.58	132.61	118.56	192.79	0.49	0.48	0.80	0.70	0.77	Matched[1189]
YDR220C		"Dubious open reading frame, null mutant exhibits synthetic phenotype with alpha-synuclein"	Dubious	chr4:906996-907289	906996-907289	98.7%	17.23	20.68	24.13	27.57	13.79	13.79	18.96	25.85	13.79	0.07	0.10	0.06	-0.91	0.71	Overlap[1189,1190]
YDR221W	GTB1	"Glucosidase II beta subunit, forms a complex with alpha subunit Rot2p, involved in removal of two glucose residues from N-linked glycans during glycoprotein biogenesis in the ER"	Verified	chr4:907326-909434	907326-909434	98.6%	116.91	99.59	87.08	109.69	87.56	95.26	108.25	98.39	91.41	0.40	0.40	0.38	-0.11	0.61	Matched[1190]
YDR222W		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern	Uncharacterized	chr4:910050-911297	910050-911297	98.9%	59.94	83.43	37.26	18.63	46.98	47.79	71.69	27.95	47.39	0.26	0.11	0.20	0.76	-0.24	Covered/w/another[1191]
YDR223W	CRF1	"Transcriptional corepressor involved in the regulation of ribosomal protein gene transcription via the TOR signaling pathway and protein kinase A, phosphorylated by activated Yak1p which promotes accumulation of Crf1p in the nucleus"	Verified	chr4:912095-913498	912095-913498	98.6%	44.77	41.88	35.38	35.38	29.61	35.38	43.33	35.38	32.49	0.16	0.14	0.13	-0.12	0.63	Covered/w/another[1191]
YDR224C	HTB1	"One of two nearly identical (see HTB2) histone H2B subtypes required for chromatin assembly and chromosome function; Rad6p-Bre1p-Lge1p mediated ubiquitination regulates transcriptional activation, meiotic DSB formation and H3 methylation"	Verified	chr4:914313-914708	914313-914708	86.6%	6056.16	4763.83	5744.01	4425.43	4148.29	2855.96	5409.99	5084.72	3502.13	19.97	20.64	14.51	-0.54	-0.44	Matched[1192]
YDR225W	HTA1	One of two nearly identical (see also HTA2) histone H2A subtypes; core histone required for chromatin assembly and chromosome function; DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p	Verified	chr4:915526-915924	915526-915924	71.2%	5808.04	4913.41	5212.80	3324.92	4476.67	1877.31	5360.73	4268.86	3176.99	19.79	17.33	13.16	-0.43	-1.85	Matched[1193]
YDR226W	ADK1	"Adenylate kinase, required for purine metabolism; localized to the cytoplasm and the mitochondria; lacks cleavable signal sequence"	Verified	chr4:916482-917150	916482-917150	98.7%	3581.14	3276.65	3593.26	3185.76	1851.16	1633.02	3428.90	3389.51	1742.09	12.66	13.76	7.22	-0.96	-1.48	Matched[1194]
YDR227W	SIR4	"Silent information regulator that, together with SIR2 and SIR3, is involved in assembly of silent chromatin domains at telomeres and the silent mating-type loci; potentially phosphorylated by Cdc28p; some alleles of SIR4 prolong lifespan"	Verified	chr4:917567-921643	917567-921643	98.7%	100.40	91.95	71.57	74.55	50.70	63.12	96.17	73.06	56.91	0.36	0.30	0.24	-0.36	0.07	Covered/w/another[1195]
YDR228C	PCF11	"mRNA 3' end processing factor, essential component of cleavage and polyadenylation factor IA (CF IA), involved in pre-mRNA 3' end processing and in transcription termination; binds C-terminal domain of largest subunit of RNA pol II (Rpo21p)"	Verified	chr4:921922-923802	921922-923802	98.4%	119.91	125.85	98.85	65.90	102.63	64.28	122.88	82.37	83.45	0.45	0.33	0.35	0.02	0.39	Covered/w/another[1195]
YDR229W	IVY1	"Phospholipid-binding protein that interacts with both Ypt7p and Vps33p, may partially counteract the action of Vps33p and vice versa, localizes to the rim of the vacuole as cells approach stationary phase"	Verified	chr4:924781-926142	924781-926142	98.4%	135.10	132.11	132.86	134.35	197.80	161.97	133.61	133.61	179.88	0.49	0.54	0.75	0.43	0.84	Matched[1197]
YDR230W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene COX20"	Dubious	chr4:926219-926566	926219-926566	99.0%	156.75	296.08	267.05	296.08	627.00	310.60	226.42	281.57	468.80	0.84	1.14	1.94	0.74	0.05	Covered/w/another[1197]
YDR231C	COX20	"Mitochondrial inner membrane protein, required for proteolytic processing of Cox2p and its assembly into cytochrome c oxidase"	Verified	chr4:926289-926906	926289-926906	98.8%	171.88	266.83	258.65	278.29	538.57	322.49	219.36	268.47	430.53	0.81	1.09	1.78	0.68	0.59	Covered/w/another[1197]
YDR232W	HEM1	"5-aminolevulinate synthase, catalyzes the first step in the heme biosynthetic pathway; an N-terminal signal sequence is required for localization to the mitochondrial matrix; expression is regulated by Hap2p-Hap3p"	Verified	chr4:927448-929094	927448-929094	98.7%	506.53	573.00	492.99	418.52	238.80	242.49	539.76	455.75	240.65	1.99	1.85	1.00	-0.92	-0.68	Matched[1198]
YDR233C	RTN1	ER membrane protein that interacts with exocyst subunit Sec6p and with Yip3p; also interacts with Sbh1p; null mutant has an altered (mostly cisternal) ER morphology; member of the RTNLA (reticulon-like A) subfamily	Verified	chr4:929466-930353	929466-930353	98.5%	1877.89	1749.88	1752.17	1457.28	1010.38	694.92	1813.89	1604.72	852.65	6.70	6.51	3.53	-0.91	-0.67	Frag>80[1199,1200]
YDR234W	LYS4	"Homoaconitase, catalyzes the conversion of homocitrate to homoisocitrate, which is a step in the lysine biosynthesis pathway"	Verified	chr4:931125-933206	931125-933206	98.6%	223.63	208.53	187.58	142.75	26.31	18.03	216.08	165.16	22.17	0.80	0.67	0.09	-2.90	-2.16	Matched[1201]
YDR235W	PRP42	"U1 snRNP protein involved in splicing, required for U1 snRNP biogenesis; contains multiple tetriatricopeptide repeats"	Verified	chr4:933500-935134	933500-935134	99.0%	115.50	151.95	100.06	108.09	111.80	74.74	133.72	104.08	93.27	0.49	0.42	0.39	-0.16	-0.34	Covered/w/another[1202]
YDR236C	FMN1	"Riboflavin kinase, phosphorylates riboflavin to form riboflavin monophosphate (FMN), which is a necessary cofactor for many enzymes; localizes to microsomes and to the mitochondrial inner membrane"	Verified	chr4:935232-935888	935232-935888	99.1%	165.81	158.14	173.49	162.74	290.17	214.94	161.98	168.12	252.56	0.60	0.68	1.05	0.59	0.16	Covered/w/another[1202]
YDR237W	MRPL7	Mitochondrial ribosomal protein of the large subunit	Verified	chr4:936611-937489	936611-937489	98.8%	240.61	204.92	272.85	249.82	340.77	195.71	222.77	261.33	268.24	0.82	1.06	1.11	0.04	0.06	Covered/w/another[1202]
YDR238C	SEC26	"Essential beta-coat protein of the COPI coatomer, involved in ER-to-Golgi protein trafficking and maintenance of normal ER morphology; shares 43% sequence identity with mammalian beta-coat protein (beta-COP)"	Verified	chr4:937891-940812	937891-940812	99.1%	667.77	595.22	612.84	589.70	415.59	526.13	631.50	601.27	470.86	2.33	2.44	1.95	-0.35	0.28	Matched[1203]
YDR239C		"Protein of unknown function that may interact with ribosomes, based on co-purification experiments"	Verified	chr4:941053-943416	941053-943416	99.1%	61.05	50.80	40.98	32.02	38.00	29.46	55.93	36.50	33.73	0.21	0.15	0.14	-0.11	0.15	Matched[1204]
YDR241W	BUD26	"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; 1% of ORF overlaps the verified gene SNU56; diploid mutant displays a weak budding pattern phenotype in a systematic assay"	Dubious	chr4:945147-945434	945147-945434	89.2%	31.13	27.24	19.46	31.13	42.80	23.35	29.18	25.29	33.07	0.11	0.10	0.14	0.39	-0.06	Frag<80[1206]
YDR240C	SNU56	"Component of U1 snRNP required for mRNA splicing via spliceosome; yeast specific, no metazoan counterpart; interacts with mRNA in commitment complex"	Verified	chr4:943670-945148	943670-945148	99.2%	70.86	59.28	59.28	59.28	23.85	26.57	65.07	59.28	25.21	0.24	0.24	0.10	-1.23	-0.42	Matched[1205]
YDR242W	AMD2	Putative amidase	Verified	chr4:946803-948452	946803-948452	98.8%	79.10	88.92	66.84	38.02	66.23	55.19	84.01	52.43	60.71	0.31	0.21	0.25	0.21	0.41	Covered/w/another[1207]
YDR243C	PRP28	"RNA helicase in the DEAD-box family, involved in RNA isomerization at the 5' splice site"	Verified	chr4:948514-950280	948514-950280	99.3%	66.71	50.18	50.18	34.21	37.63	23.95	58.44	42.19	30.79	0.22	0.17	0.13	-0.45	-0.20	Covered/w/another[1207]
YDR244W	PEX5	"Peroxisomal membrane signal receptor for the C-terminal tripeptide signal sequence (PTS1) of peroxisomal matrix proteins, required for peroxisomal matrix protein import; also proposed to have PTS1-receptor independent functions"	Verified	chr4:950559-952397	950559-952397	98.5%	96.57	105.40	98.78	94.92	156.72	109.26	100.99	96.85	132.99	0.37	0.39	0.55	0.46	0.82	Matched[1208]
YDR245W	MNN10	"Subunit of a Golgi mannosyltransferase complex also containing Anp1p, Mnn9p, Mnn11p, and Hoc1p that mediates elongation of the polysaccharide mannan backbone; membrane protein of the mannosyltransferase family"	Verified	chr4:952796-953977	952796-953977	98.5%	491.34	402.00	426.91	394.27	210.45	163.21	446.67	410.59	186.83	1.65	1.67	0.77	-1.14	-1.00	Matched[1209]
YDR246W	TRS23	One of 10 subunits of the transport protein particle (TRAPP) complex of the cis-Golgi which mediates vesicle docking and fusion; involved in endoplasmic reticulum (ER) to Golgi membrane traffic; human homolog is TRAPPC4	Verified	chr4:954284-954943	954284-954943	98.6%	170.63	139.88	127.59	149.11	285.92	247.49	155.26	138.35	266.70	0.57	0.56	1.11	0.95	1.07	Covered/w/another[1210]
YDR246W-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr4:955129-955329	955129-955329	98.6%	10.09	25.23	20.19	20.19	25.23	20.19	17.66	20.19	22.71	0.07	0.08	0.09	0.17	NaN	Covered/w/another[1210]
YDR247W	VHS1	"Cytoplasmic serine/threonine protein kinase; identified as a high-copy suppressor of the synthetic lethality of a sis2 sit4 double mutant, suggesting a role in G1/S phase progression; homolog of Sks1p"	Verified	chr4:956009-957394	956009-957394	98.9%	123.34	137.93	118.23	125.52	240.83	198.50	130.63	121.88	219.67	0.48	0.49	0.91	0.85	1.14	Covered/w/another[1210]
YDR248C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr4:957754-958335	957754-958335	99.3%	273.32	375.38	280.24	249.10	887.42	501.66	324.35	264.67	694.54	1.20	1.07	2.88	1.39	0.75	Covered/w/another[1210]
YDR249C		Putative protein of unknown function	Uncharacterized	chr4:958677-959798	958677-959798	99.1%	53.08	55.77	46.78	29.69	53.98	34.18	54.42	38.23	44.08	0.20	0.16	0.18	0.21	0.04	Matched[1211]
YDR250C		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data"	Dubious	chr4:960082-960357	960082-960357	98.5%	18.40	22.08	11.04	11.04	11.04	36.79	20.24	11.04	23.92	0.07	0.04	0.10	1.12	0.47	Overlap[1212]
YDR251W	PAM1	"Essential protein of unknown function; exhibits variable expression during colony morphogenesis; overexpression permits survival without protein phosphatase 2A, inhibits growth, and induces a filamentous phenotype"	Verified	chr4:960610-963102	960610-963102	98.9%	272.64	292.52	307.53	301.45	339.18	281.97	282.58	304.49	310.57	1.04	1.24	1.29	0.03	0.44	Matched[1212]
YDR252W	BTT1	"Beta3 subunit of the heterotrimeric nascent polypeptide-associated complex (alpha, beta1, beta3) which binds ribosomes via its beta-subunits in close proximity to nascent polypeptides"	Verified	chr4:963408-963857	963408-963857	98.6%	76.63	74.38	78.89	58.60	112.70	51.84	75.51	68.75	82.27	0.28	0.28	0.34	0.26	0.45	Covered/w/another[1213]
YDR253C	MET32	"Zinc-finger DNA-binding protein, involved in transcriptional regulation of the methionine biosynthetic genes, similar to Met31p"	Verified	chr4:963986-964561	963986-964561	99.5%	68.05	111.67	122.14	54.09	92.48	33.15	89.86	88.11	62.81	0.33	0.36	0.26	-0.49	-0.56	Matched[1213]
YDR254W	CHL4	"Outer kinetochore protein required for chromosome stability, interacts with kinetochore proteins Ctf19p, Ctf3p, and Iml3p; exhibits a two-hybrid interaction with Mif2p; association with CEN DNA requires Ctf19p"	Verified	chr4:965109-966485	965109-966485	98.9%	140.31	196.88	145.45	91.09	194.67	118.27	168.60	118.27	156.47	0.62	0.48	0.65	0.40	-0.63	Matched[1214]
YDR255C	RMD5	"Cytosolic protein required for sporulation; also required for the ubiquitination of the gluconeogenetic enzyme fructose-1,6-bisphosphatase, which is degraded rapidly after the switch from gluconeogenesis to glycolysis"	Verified	chr4:966553-967818	966553-967818	99.2%	99.50	142.48	121.78	97.90	176.70	145.66	120.99	109.84	161.18	0.45	0.45	0.67	0.55	0.62	Frag<80[1215]
YDR256C	CTA1	"Catalase A, breaks down hydrogen peroxide in the peroxisomal matrix formed by acyl-CoA oxidase (Pox1p) during fatty acid beta-oxidation"	Verified	chr4:968129-969676	968129-969676	98.9%	54.88	62.06	42.46	31.36	53.57	35.93	58.47	36.91	44.75	0.22	0.15	0.19	0.28	1.66	Matched[1216]
YDR257C	SET7	"Nuclear protein that contains a SET-domain, which have been shown to mediate methyltransferase activity in other proteins"	Verified	chr4:969986-971470	969986-971470	99.4%	136.88	116.55	125.36	124.00	91.48	43.37	126.72	124.68	67.42	0.47	0.51	0.28	-0.89	-0.81	Matched[1217]
YDR258C	HSP78	Oligomeric mitochondrial matrix chaperone that cooperates with Ssc1p in mitochondrial thermotolerance after heat shock; prevents the aggregation of misfolded matrix proteins; component of the mitochondrial proteolysis system	Verified	chr4:971804-974239	971804-974239	99.2%	167.15	396.37	230.04	328.93	9184.69	7548.74	281.76	279.48	8366.71	1.04	1.13	34.67	4.90	4.45	Frag>80[1218,1219]
YDR259C	YAP6	Putative basic leucine zipper (bZIP) transcription factor; overexpression increases sodium and lithium tolerance	Verified	chr4:974627-975778	974627-975778	99.0%	42.95	64.87	40.32	43.83	140.25	74.51	53.91	42.08	107.38	0.20	0.17	0.44	1.35	1.16	Matched[1220]
YDR260C	SWM1	"Subunit of the anaphase-promoting complex, which is an E3 ubiquitin ligase that regulates the metaphase-anaphase transition and exit from mitosis; required for activation of the daughter-specific gene expression and spore wall maturation"	Verified	chr4:976713-977225	976713-977225	99.1%	131.80	116.07	125.90	98.36	159.34	45.25	123.93	112.13	102.30	0.46	0.46	0.42	-0.13	-0.92	Matched[1221]
YDR261C	EXG2	"Exo-1,3-beta-glucanase, involved in cell wall beta-glucan assembly; may be anchored to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor"	Verified	chr4:977517-979205	977517-979205	99.1%	198.40	276.68	170.31	129.08	211.54	178.68	237.54	149.69	195.11	0.88	0.61	0.81	0.38	1.09	Matched[1222]
YDR262W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the vacuole and is induced in response to the DNA-damaging agent MMS; gene expression increases in response to Zymoliase treatment	Uncharacterized	chr4:993130-993948	993130-993948	98.6%	314.70	365.49	271.33	236.64	478.24	344.43	340.10	253.99	411.34	1.26	1.03	1.70	0.70	0.86	Matched[1226]
YDR263C	DIN7	"Mitochondrial nuclease functioning in DNA repair and replication, modulates the stability of the mitochondrial genome, induced by exposure to mutagens, also induced during meiosis at a time nearly coincident with commitment to recombination"	Verified	chr4:994238-995530	994238-995530	99.3%	56.07	50.62	40.50	30.37	64.64	44.39	53.35	35.43	54.51	0.20	0.14	0.23	0.62	1.03	Matched[1227]
YDR264C	AKR1	Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats	Verified	chr4:996025-998319	996025-998319	99.0%	261.93	206.46	224.95	218.35	254.45	208.22	234.20	221.65	231.34	0.86	0.90	0.96	0.06	0.45	Matched[1228]
YDR265W	PEX10	"C3HC4-type RING-finger peroxisomal membrane peroxin required for peroxisomal matrix protein import, interacts with Pex12p, links ubiquitin-conjugating Pex4p to import machinery; mutations in human homolog cause various peroxisomal disorders"	Verified	chr4:998860-999873	998860-999873	98.8%	114.81	114.81	99.84	72.88	131.79	85.86	114.81	86.36	108.82	0.42	0.35	0.45	0.33	0.08	Matched[1229]
YDR266C		"Protein of unknown function that may interact with ribosomes, based on co-purification experiments;green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; contains a RING finger domain"	Verified	chr4:1000100-1002019	1000100-1002019	98.9%	268.02	235.90	221.69	223.79	194.83	230.11	251.96	222.74	212.47	0.93	0.90	0.88	-0.07	0.44	Covered/w/another[1230]
YDR267C	CIA1	Essential protein involved in assembly of cytosolic and nuclear iron-sulfur proteins	Verified	chr4:1002506-1003498	1002506-1003498	99.3%	174.35	154.07	157.11	136.84	72.98	52.71	164.21	146.98	62.85	0.61	0.60	0.26	-1.23	-1.35	Covered/w/another[1230]
YDR268W	MSW1	Mitochondrial tryptophanyl-tRNA synthetase	Verified	chr4:1004000-1005139	1004000-1005139	98.6%	110.27	106.71	115.60	112.05	119.16	85.37	108.49	113.82	102.26	0.40	0.46	0.42	-0.15	0.20	Frag>80[1231,1232]
YDR270W	CCC2	"Cu(+2)-transporting P-type ATPase, required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases"	Verified	chr4:1005671-1008685	1005671-1008685	98.7%	60.13	46.02	52.40	45.01	81.96	66.51	53.07	48.71	74.24	0.20	0.20	0.31	0.61	1.07	Matched[1233]
YDR269C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:1005661-1005984	1005661-1005984	98.4%	25.08	18.81	34.49	25.08	31.36	62.71	21.95	29.79	47.03	0.08	0.12	0.19	0.66	-0.00	Covered/w/another[1233]
YDR271C		Hypothetical protein	Dubious	chr4:1008391-1008762	1008391-1008762	98.9%	84.27	92.42	92.42	54.37	157.66	97.86	88.35	73.39	127.76	0.33	0.30	0.53	0.80	1.08	Covered/w/another[1233]
YDR272W	GLO2	"Cytoplasmic glyoxalase II, catalyzes the hydrolysis of S-D-lactoylglutathione into glutathione and D-lactate"	Verified	chr4:1009006-1009830	1009006-1009830	98.4%	347.24	440.82	449.44	403.88	1336.00	959.21	394.03	426.66	1147.61	1.45	1.73	4.75	1.43	1.21	Matched[1234]
YDR273W	DON1	"Meiosis-specific component of the spindle pole body, part of the leading edge protein (LEP) coat, forms a ring-like structure at the leading edge of the prospore membrane during meiosis II"	Verified	chr4:1010172-1011269	1010172-1011269	98.4%	34.24	72.18	34.24	14.81	37.94	26.84	53.21	24.52	32.39	0.20	0.10	0.13	0.40	0.71	Covered/w/another[1235]
YDR274C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:1011585-1011956	1011585-1011956	97.6%	27.54	338.73	44.06	44.06	35.80	46.82	183.13	44.06	41.31	0.68	0.18	0.17	-0.09	0.32	Covered/w/another[1235]
YDR275W	BSC2	"Protein of unknown function, ORF exhibits genomic organization compatible with a translational readthrough-dependent mode of expression"	Verified	chr4:1012248-1012955	1012248-1012955	98.8%	190.20	474.79	214.52	153.02	403.29	238.83	332.50	183.77	321.06	1.23	0.75	1.33	0.80	0.23	Matched[1236]
YDR276C	PMP3	"Small plasma membrane protein related to a family of plant polypeptides that are overexpressed under high salt concentration or low temperature, not essential for viability, deletion causes hyperpolarization of the plasma membrane potential"	Verified	chr4:1013472-1013639	1013472-1013639	98.6%	3785.66	4383.40	4371.32	4093.58	8507.17	4818.11	4084.53	4232.45	6662.64	15.08	17.18	27.61	0.65	-0.79	Matched[1237]
YDR277C	MTH1	"Negative regulator of the glucose-sensing signal transduction pathway, required for repression of transcription by Rgt1p; interacts with Rgt1p and the Snf3p and Rgt2p glucose sensors; phosphorylated by Yck1p, triggering Mth1p degradation"	Verified	chr4:1014397-1015698	1014397-1015698	99.1%	179.79	307.66	214.67	259.61	99.97	65.10	243.73	237.14	82.53	0.90	0.96	0.34	-1.52	-1.46	Matched[1239]
YDR278C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:1016997-1017314	1016997-1017314	83.5%	0.00	3.77	0.00	0.00	3.77	7.54	1.88	0.00	5.65	0.01	0.00	0.02	Inf	-0.24	
YDR279W	RNH202	"Ribonuclease H2 subunit, required for RNase H2 activity"	Verified	chr4:1019364-1020416	1019364-1020416	99.0%	172.72	127.62	134.34	143.94	96.92	50.86	150.17	139.14	73.89	0.55	0.56	0.31	-0.91	-0.98	Matched[1240]
YDR280W	RRP45	Protein involved in rRNA processing; component of the exosome 3->5 exonuclease complex	Verified	chr4:1020743-1021660	1020743-1021660	98.6%	255.23	204.40	239.76	192.25	135.90	85.08	229.81	216.00	110.49	0.85	0.88	0.46	-0.97	-1.00	Matched[1241]
YDR281C	PHM6	"Protein of unknown function, expression is regulated by phosphate levels"	Verified	chr4:1022003-1022317	1022003-1022317	99.0%	307.69	314.10	291.67	115.38	25.64	3.21	310.90	203.53	14.42	1.15	0.83	0.06	-3.82	-3.44	Matched[1242]
YDR282C		Putative protein of unknown function	Uncharacterized	chr4:1023507-1024751	1023507-1024751	99.4%	49.32	50.93	52.55	32.34	105.91	58.21	50.12	42.44	82.06	0.19	0.17	0.34	0.95	0.79	Matched[1243]
YDR283C	GCN2	"Protein kinase, phosphorylates the alpha-subunit of translation initiation factor eIF2 (Sui2p) in response to starvation; activated by uncharged tRNAs and the Gcn1p-Gcn20p complex"	Verified	chr4:1025066-1030045	1025066-1030045	99.3%	104.54	98.48	81.29	76.84	49.95	43.68	101.51	79.06	46.81	0.37	0.32	0.19	-0.76	-0.40	Matched[1244]
YDR284C	DPP1	"Diacylglycerol pyrophosphate (DGPP) phosphatase, zinc-regulated vacuolar membrane-associated lipid phosphatase, dephosphorylates DGPP to phosphatidate (PA) and Pi, then PA to diacylglycerol; involved in lipid signaling and cell metabolism"	Verified	chr4:1030546-1031415	1030546-1031415	98.9%	489.39	506.83	513.80	481.26	419.65	212.73	498.11	497.53	316.19	1.84	2.02	1.31	-0.65	-0.95	Frag>80[1245,1246]
YDR285W	ZIP1	Transverse filament protein of the synaptonemal complex; required for normal levels of meiotic recombination and pairing between homologous chromosome during meiosis; potential Cdc28p substrate	Verified	chr4:1032432-1035059	1032432-1035059	98.7%	30.09	35.87	27.77	23.53	45.13	25.84	32.98	25.65	35.49	0.12	0.10	0.15	0.47	0.67	Frag>80[1247]
YDR286C		Putative protein of unknown function; predicted to have thiol-disulfide oxidoreductase active site	Uncharacterized	chr4:1035227-1035571	1035227-1035571	99.2%	110.99	148.96	105.15	93.46	283.32	108.07	129.97	99.31	195.69	0.48	0.40	0.81	0.98	0.47	Matched[1248]
YDR287W		Inositol monophosphatase	Uncharacterized	chr4:1035991-1036869	1035991-1036869	98.4%	145.61	166.41	108.63	128.27	307.40	228.81	156.01	118.45	268.10	0.58	0.48	1.11	1.18	0.94	Frag>80[1249,1250]
YDR288W	NSE3	Essential subunit of the Mms21-Smc5-Smc6 complex; protein of unknown function; required for DNA repair and growth	Verified	chr4:1037191-1038102	1037191-1038102	98.7%	131.09	141.09	132.20	123.32	255.52	105.54	136.09	127.76	180.53	0.50	0.52	0.75	0.50	0.35	Covered/w/another[1251]
YDR290W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF RTT103"	Dubious	chr4:1039366-1039695	1039366-1039695	98.9%	36.75	55.13	70.44	42.88	49.00	45.94	45.94	56.66	47.47	0.17	0.23	0.20	-0.26	0.05	Overlap[1251]
YDR289C	RTT103	"Protein that interacts with exonuclease Rat1p and Rai1p and plays a role in transcription termination by RNA polymerase II, has an RPR domain (carboxy-terminal domain interacting domain); also involved in regulation of Ty1 transposition"	Verified	chr4:1038276-1039505	1038276-1039505	97.9%	126.23	133.70	158.62	141.18	204.29	115.43	129.97	149.90	159.86	0.48	0.61	0.66	0.09	0.11	Covered/w/another[1251]
YDR291W		Putative DNA helicase	Uncharacterized	chr4:1039724-1042957	1039724-1042957	98.7%	73.92	79.24	61.08	57.00	49.80	44.48	76.58	59.04	47.14	0.28	0.24	0.20	-0.32	0.10	Matched[1252]
YDR292C	SRP101	Signal recognition particle (SRP) receptor - alpha subunit; contain GTPase domains; involved in SRP-dependent protein targeting; interacts with SRP102p	Verified	chr4:1043142-1045007	1043142-1045007	99.3%	219.73	204.61	207.31	235.92	153.32	112.29	212.17	221.62	132.81	0.78	0.90	0.55	-0.74	-0.71	Matched[1253]
YDR293C	SSD1	"Protein with a role in maintenance of cellular integrity, interacts with components of the TOR pathway; ssd1 mutant of a clinical S. cerevisiae strain displays elevated virulence"	Verified	chr4:1045636-1049388	1045636-1049388	99.0%	296.93	363.16	314.70	280.51	296.93	491.83	330.04	297.60	394.38	1.22	1.21	1.63	0.41	1.45	Covered[1254]
YDR294C	DPL1	"Dihydrosphingosine phosphate lyase, regulates intracellular levels of sphingolipid long-chain base phosphates (LCBPs), degrades phosphorylated long chain bases, prefers C16 dihydrosphingosine-l-phosphate as a substrate"	Verified	chr4:1050455-1052224	1050455-1052224	99.0%	279.02	304.13	268.18	234.52	292.72	269.89	291.58	251.35	281.31	1.08	1.02	1.17	0.16	0.84	Frag>80[1255,1256]
YDR295C	HDA2	Subunit of a possibly tetrameric trichostatin A-sensitive class II histone deacetylase complex containing an Hda1p homodimer and an Hda2p-Hda3p heterodimer; involved in telomere maintenance	Verified	chr4:1052619-1054643	1052619-1054643	99.2%	100.58	94.11	78.17	63.73	126.97	109.05	97.34	70.95	118.01	0.36	0.29	0.49	0.73	1.17	Matched[1257]
YDR296W	MHR1	Protein involved in homologous recombination in mitochondria and in transcription regulation in nucleus; binds to activation domains of acidic activators; required for recombination-dependent mtDNA partitioning	Verified	chr4:1055208-1055888	1055208-1055888	98.1%	348.69	341.21	330.74	348.69	419.03	309.78	344.95	339.71	364.41	1.27	1.38	1.51	0.10	0.37	Matched[1258]
YDR297W	SUR2	"Sphinganine C4-hydroxylase, catalyses the conversion of sphinganine to phytosphingosine in sphingolipid biosyntheis"	Verified	chr4:1056547-1057596	1056547-1057596	98.9%	564.55	1237.96	666.67	758.19	210.02	178.23	901.25	712.43	194.12	3.33	2.89	0.80	-1.88	-1.48	Matched[1259]
YDR298C	ATP5	"Subunit 5 of the stator stalk of mitochondrial F1F0 ATP synthase, which is an evolutionarily conserved enzyme complex required for ATP synthesis; homologous to bovine subunit OSCP (oligomycin sensitivity-conferring protein); phosphorylated"	Verified	chr4:1058172-1058810	1058172-1058810	99.1%	750.10	799.05	876.43	1046.98	824.32	604.82	774.58	961.71	714.57	2.86	3.90	2.96	-0.43	-0.41	Matched[1261]
YDR299W	BFR2	Essential protein possibly involved in secretion; multicopy suppressor of sensitivity to Brefeldin A	Verified	chr4:1059623-1061227	1059623-1061227	98.1%	209.62	142.92	127.04	111.16	11.43	7.62	176.27	119.10	9.53	0.65	0.48	0.04	-3.64	-3.43	Matched[1262]
YDR300C	PRO1	"Gamma-glutamyl kinase, catalyzes the first step in proline biosynthesis"	Verified	chr4:1061501-1062787	1061501-1062787	99.2%	256.05	198.11	204.37	173.83	31.32	12.53	227.08	189.10	21.92	0.84	0.77	0.09	-3.11	-2.81	Matched[1263]
YDR301W	CFT1	"RNA-binding subunit of the mRNA cleavage and polyadenylation factor; involved in poly(A) site recognition and required for both pre-mRNA cleavage and polyadenylation, 51% sequence similarity with mammalian AAUAA-binding subunit of CPSF"	Verified	chr4:1063348-1067421	1063348-1067421	98.9%	89.12	96.31	70.50	75.21	41.21	65.29	92.72	72.86	53.25	0.34	0.30	0.22	-0.45	0.14	Matched[1264]
YDR302W	GPI11	ER membrane protein involved in a late step of glycosylphosphatidylinositol (GPI) anchor assembly; involved in the addition of phosphoethanolamine to the multiply mannosylated GPI intermediate; human PIG-Fp is a functional homolog	Verified	chr4:1067727-1068386	1067727-1068386	99.1%	315.04	195.76	275.28	250.81	295.16	136.11	255.40	263.05	215.64	0.94	1.07	0.89	-0.29	-0.85	Matched[1265]
YDR303C	RSC3	Component of the RSC chromatin remodeling complex; essential gene required for maintenance of proper ploidy and regulation of ribosomal protein genes and the cell wall/stress response; highly similar to Rsc30p	Verified	chr4:1068725-1071382	1068725-1071382	99.1%	155.21	142.31	135.86	130.93	165.84	117.26	148.76	133.39	141.55	0.55	0.54	0.59	0.09	0.13	Matched[1266]
YDR304C	CPR5	"Peptidyl-prolyl cis-trans isomerase (cyclophilin) of the endoplasmic reticulum, catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; transcriptionally induced in response to unfolded proteins in the ER"	Verified	chr4:1071876-1072553	1071876-1072553	96.9%	1184.47	1559.00	1350.42	1432.63	1816.29	1621.42	1371.73	1391.52	1718.85	5.06	5.65	7.12	0.30	0.33	Matched[1267]
YDR305C	HNT2	Dinucleoside triphosphate hydrolase; has similarity to the tumor suppressor FHIT and belongs to the histidine triad (HIT) superfamily of nucleotide-binding proteins	Verified	chr4:1072742-1073484	1072742-1073308,1073398-1073484	99.1%	188.26	158.94	141.97	118.82	205.23	77.16	173.60	130.39	141.19	0.64	0.53	0.59	0.11	-0.08	Covered/w/another[1268]
YDR306C		F-box protein of unknown function; interacts with Sgt1p via a Leucine-Rich Repeat (LRR) domain	Uncharacterized	chr4:1073731-1075167	1073731-1075167	99.1%	115.87	158.00	138.34	138.34	256.31	212.07	136.93	138.34	234.19	0.51	0.56	0.97	0.76	1.06	Covered/w/another[1268]
YDR307W		Putative protein of unknown function	Uncharacterized	chr4:1075861-1077849	1075861-1077849	99.1%	137.50	147.14	134.96	112.64	203.45	128.36	142.32	123.80	165.91	0.53	0.50	0.69	0.42	0.23	Matched[1269]
YDR308C	SRB7	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation; target of the global repressor Tup1p	Verified	chr4:1078023-1078445	1078023-1078445	99.4%	187.82	185.44	166.42	164.04	223.48	145.02	186.63	165.23	184.25	0.69	0.67	0.76	0.16	-0.36	Covered/w/another[1269]
YDR309C	GIC2	"Protein of unknown function involved in initiation of budding and cellular polarization, interacts with Cdc42p via the Cdc42/Rac-interactive binding (CRIB) domain"	Verified	chr4:1079044-1080195	1079044-1080195	98.6%	472.75	398.80	427.85	352.14	210.40	198.96	435.77	389.99	204.68	1.61	1.58	0.85	-0.93	-0.56	Matched[1271]
YDR310C	SUM1	"Transcriptional repressor required for mitotic repression of middle sporulation-specific genes; involved in telomere maintenance, regulated by the pachytene checkpoint"	Verified	chr4:1081124-1084312	1081124-1084312	99.0%	231.30	202.79	197.40	165.40	152.72	204.69	217.04	181.40	178.70	0.80	0.74	0.74	-0.02	0.41	Frag>80[1272,1273,1274]
YDR311W	TFB1	"Subunit of TFIIH and nucleotide excision repair factor 3 complexes, required for nucleotide excision repair, target for transcriptional activators"	Verified	chr4:1085062-1086990	1085062-1086990	98.7%	116.57	106.59	87.69	89.79	99.77	72.46	111.58	88.74	86.11	0.41	0.36	0.36	-0.04	0.29	Matched[1275]
YDR312W	SSF2	"Protein required for ribosomal large subunit maturation, functionally redundant with Ssf1p; member of the Brix family"	Verified	chr4:1087578-1088939	1087578-1088939	59.3%	139.83	110.13	113.84	69.30	17.32	11.14	124.98	91.57	14.23	0.46	0.37	0.06	-2.69	-2.26	Frag>80[1276,1277,1278]
YDR313C	PIB1	"RING-type ubiquitin ligase of the endosomal and vacuolar membranes, binds phosphatidylinositol(3)-phosphate; contains a FYVE finger domain"	Verified	chr4:1089216-1090076	1089216-1090076	99.1%	132.47	106.68	109.03	132.47	345.84	302.46	119.58	120.75	324.15	0.44	0.49	1.34	1.42	1.50	Matched[1279]
YDR314C	RAD34	Protein involved in nucleotide excision repair (NER); homologous to RAD4	Verified	chr4:1090430-1092508	1090430-1092508	99.3%	26.15	32.44	26.15	24.21	42.61	46.97	29.29	25.18	44.79	0.11	0.10	0.19	0.83	1.60	Matched[1280]
YDR315C	IPK1	"Inositol 1,3,4,5,6-pentakisphosphate 2-kinase, nuclear protein required for synthesis of 1,2,3,4,5,6-hexakisphosphate (phytate), which is integral to cell function; has 2 motifs conserved in other fungi; ipk1 gle1 double mutant is inviable"	Verified	chr4:1092738-1093583	1092738-1093583	99.3%	110.67	121.38	85.68	88.06	107.10	67.83	116.03	86.87	87.47	0.43	0.35	0.36	0.01	-0.45	Covered/w/another[1281]
YDR316W	OMS1	Protein integral to the mitochondrial membrane; has a conserved methyltransferase motif; multicopy suppressor of respiratory defects caused by OXA1 mutations	Verified	chr4:1093760-1095175	1093760-1095175	98.5%	150.54	134.05	139.79	146.24	169.18	116.85	142.30	143.02	143.02	0.53	0.58	0.59	0.00	0.16	Frag<80[1282,1283]
YDR317W	HIM1	Protein of unknown function involved in DNA repair	Verified	chr4:1102181-1103425	1102181-1103425	98.7%	47.18	39.86	47.99	36.60	32.54	23.59	43.52	42.30	28.06	0.16	0.17	0.12	-0.59	-0.03	Covered[1284]
YDR318W	MCM21	"Protein involved in minichromosome maintenance; component of the COMA complex (Ctf19p, Okp1p, Mcm21p, Ame1p) that bridges kinetochore subunits that are in contact with centromeric DNA and the subunits bound to microtubules"	Verified	chr4:1103755-1104944	1103755-1103806,1103890-1104944	98.8%	134.46	128.06	110.68	111.59	118.91	81.41	131.26	111.14	100.16	0.48	0.45	0.41	-0.15	-0.24	
YDR319C		Putative protein of unknown function; identified as interacting with Sst2p and Hsp82p in high-throughput two-hybrid screens	Uncharacterized	chr4:1105000-1105824	1105000-1105824	99.0%	155.48	145.68	154.25	175.07	340.34	221.59	150.58	164.66	280.96	0.56	0.67	1.16	0.77	0.42	Covered/w/another[1285]
YDR320C	SWA2	Auxilin-like protein involved in vesicular transport; clathrin-binding protein required for uncoating of clathrin-coated vesicles	Verified	chr4:1106092-1108098	1106092-1108098	99.0%	79.51	76.99	70.45	80.01	110.70	129.32	78.25	75.23	120.01	0.29	0.31	0.50	0.67	1.01	Covered/w/another[1285]
YDR320W-B		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene DAD4/YDR320C-A"	Dubious	chr4:1108481-1108618	1108481-1108618	98.9%	102.56	73.26	146.52	65.93	212.45	168.50	87.91	106.23	190.48	0.32	0.43	0.79	0.84	NaN	Matched[1286]
YDR320C-A	DAD4	"Essential subunit of the Dam1 complex (aka DASH complex), couples kinetochores to the force produced by MT depolymerization thereby aiding in chromosome segregation; is transferred to the kinetochore prior to mitosis"	Verified	chr4:1108277-1108495	1108277-1108495	99.4%	408.96	385.99	496.27	372.20	634.12	358.41	397.47	434.23	496.27	1.47	1.76	2.06	0.19	-0.54	Matched[1286]
YDR321W	ASP1	"Cytosolic L-asparaginase, involved in asparagine catabolism"	Verified	chr4:1108699-1109844	1108699-1109844	98.9%	587.56	392.59	495.81	441.11	149.10	125.28	490.08	468.46	137.19	1.81	1.90	0.57	-1.77	-0.97	Matched[1287]
YDR322W	MRPL35	Mitochondrial ribosomal protein of the large subunit	Verified	chr4:1110586-1111689	1110586-1111689	98.9%	176.83	167.67	208.89	207.06	168.58	137.43	172.25	207.98	153.01	0.64	0.84	0.63	-0.44	-0.14	Matched[1288]
YDR322C-A	TIM11	"Subunit e of mitochondrial F1F0-ATPase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis; essential for the dimeric and oligomeric state of ATP synthase"	Verified	chr4:1112000-1112290	1112000-1112290	99.3%	709.55	733.78	917.22	830.69	1453.71	937.99	721.66	873.95	1195.85	2.66	3.55	4.95	0.45	-0.29	Matched[1289]
YDR323C	PEP7	"Multivalent adaptor protein that facilitates vesicle-mediated vacuolar protein sorting by ensuring high-fidelity vesicle docking and fusion, which are essential for targeting of vesicles to the endosome; required for vacuole inheritance"	Verified	chr4:1112477-1114024	1112477-1114024	99.3%	49.46	55.97	38.40	37.75	65.73	36.45	52.72	38.07	51.09	0.19	0.15	0.21	0.42	0.21	Matched[1290]
YDR324C	UTP4	"Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA"	Verified	chr4:1114430-1116760	1114430-1116760	99.3%	184.03	110.59	108.00	85.53	12.10	3.02	147.31	96.77	7.56	0.54	0.39	0.03	-3.68	-3.28	Matched[1291]
YDR325W	YCG1	"Non-SMC subunit of the condensin complex (Smc2p-Smc4p-Ycs4p-Brn1p-Ycg1p); required for establishment and maintenance of chromosome condensation, chromosome segregation and for chromatin binding of the condensin complex"	Verified	chr4:1117121-1120228	1117121-1120228	98.7%	75.61	79.52	70.72	48.89	53.12	45.95	77.57	59.81	49.54	0.29	0.24	0.21	-0.27	0.18	Matched[1292]
YDR326C	YSP2	Protein involved in programmed cell death; mutant shows resistance to cell death induced by amiodarone or intracellular acidification	Verified	chr4:1120604-1124920	1120604-1124920	99.1%	114.76	127.15	99.33	97.46	76.19	107.75	120.95	98.40	91.97	0.45	0.40	0.38	-0.10	0.51	Matched[1293]
YDR327W		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data; partially overlaps the verified gene SKP1"	Dubious	chr4:1125297-1125623	1125297-1125623	98.8%	876.16	904.02	913.31	916.41	1513.93	1083.59	890.09	914.86	1298.76	3.29	3.71	5.38	0.51	-0.07	Matched[1294]
YDR328C	SKP1	"Evolutionarily conserved kinetochore protein that is part of multiple protein complexes, including the SCF ubiquitin ligase complex, the CBF3 complex that binds centromeric DNA, and the RAVE complex that regulates assembly of the V-ATPase"	Verified	chr4:1125429-1126013	1125429-1126013	99.0%	830.68	818.59	839.32	789.24	1246.89	903.22	824.64	814.28	1075.05	3.04	3.31	4.45	0.40	0.10	Frag>80[1294,1295]
YDR329C	PEX3	Peroxisomal membrane protein (PMP) required required for the proper localization and stability of PMPs; interacts with Pex19p	Verified	chr4:1126265-1127590	1126265-1127590	99.2%	162.75	158.19	167.32	169.60	294.32	174.92	160.47	168.46	234.62	0.59	0.68	0.97	0.48	0.80	Matched[1296]
YDR330W	UBX5	UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p	Verified	chr4:1127867-1129369	1127867-1129369	98.6%	128.93	124.21	151.21	137.71	288.25	247.07	126.57	144.46	267.66	0.47	0.59	1.11	0.89	1.36	Covered/w/another[1297]
YDR331W	GPI8	ER membrane glycoprotein subunit of the glycosylphosphatidylinositol transamidase complex that adds glycosylphosphatidylinositol (GPI) anchors to newly synthesized proteins; human PIG-K protein is a functional homolog	Verified	chr4:1129583-1130818	1129583-1130818	98.9%	202.83	166.84	189.74	166.84	149.67	124.31	184.84	178.29	136.99	0.68	0.72	0.57	-0.38	-0.27	Covered/w/another[1297]
YDR332W		Hypothetical protein; null mutant displays increased levels of spontaneous Rad52 foci	Uncharacterized	chr4:1130996-1133065	1130996-1133065	98.9%	53.76	64.02	54.24	41.54	80.14	50.82	58.89	47.89	65.48	0.22	0.19	0.27	0.45	0.30	Covered/w/another[1297]
YDR333C		Putative protein of unknown function	Uncharacterized	chr4:1133255-1135426	1133255-1135426	99.1%	154.71	151.93	154.25	152.39	105.46	90.60	153.32	153.32	98.03	0.57	0.62	0.41	-0.65	-0.78	Covered/w/another[1297]
YDR334W	SWR1	"Swi2/Snf2-related ATPase that is the structural component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A"	Verified	chr4:1135927-1140471	1135927-1140471	98.5%	96.02	88.42	84.63	78.15	86.64	98.25	92.22	81.39	92.44	0.34	0.33	0.38	0.18	0.82	Matched[1298]
YDR335W	MSN5	"Karyopherin involved in nuclear import and export; shown to be responsible for nuclear import of replication protein A and for export of several proteins including Swi6p, Far1p, and Pho4p; cargo dissociation involves binding to RanGTP"	Verified	chr4:1141162-1144836	1141162-1144836	98.9%	209.95	210.23	191.79	191.24	242.70	225.09	210.09	191.52	233.89	0.78	0.78	0.97	0.29	0.69	Frag>80[1299,1300]
YDR336W		Putative protein of unknown function; sumoylated under stress conditions in a genome wide study; YDR336W is not an essential gene	Uncharacterized	chr4:1145086-1146030	1145086-1146030	98.9%	92.06	110.25	98.48	72.79	114.54	44.96	101.16	85.63	79.75	0.37	0.35	0.33	-0.10	-0.44	Matched[1301]
YDR337W	MRPS28	Mitochondrial ribosomal protein of the small subunit	Verified	chr4:1146313-1147173	1146313-1147173	98.4%	319.86	270.29	272.65	284.45	369.43	191.21	295.07	278.55	280.32	1.09	1.13	1.16	0.01	-0.09	Matched[1302]
YDR338C		Hypothetical protein	Uncharacterized	chr4:1147373-1149460	1147373-1149460	98.9%	63.91	63.91	64.40	41.64	54.71	45.51	63.91	53.02	50.11	0.24	0.22	0.21	-0.08	0.23	Matched[1303]
YDR339C	FCF1	Essential nucleolar protein that is a component of the SSU (small subunit) processome involved in the pre-rRNA processing steps of 40S ribosomal subunit biogenesis; contains a PINc domain; copurifies with Faf1p	Verified	chr4:1149945-1150514	1149945-1150514	99.3%	342.91	238.62	265.13	273.97	146.71	137.87	290.76	269.55	142.29	1.07	1.09	0.59	-0.92	-0.73	Matched[1304]
YDR340W		Putative protein of unknown function	Dubious	chr4:1150875-1151177	1150875-1151177	50.7%	0.00	0.00	0.00	0.00	0.00	6.51	0.00	0.00	3.26	0.00	0.00	0.01	Inf	-0.18	
YDR341C		"Arginyl-tRNA synthetase, proposed to be cytoplasmic but the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr4:1151797-1153620	1151797-1153620	99.1%	799.67	625.35	669.06	662.98	241.84	212.51	712.51	666.02	227.17	2.63	2.70	0.94	-1.55	-0.83	Frag>80[1305,1306,1307]
YDR342C	HXT7	"High-affinity glucose transporter of the major facilitator superfamily, nearly identical to Hxt6p, expressed at high basal levels relative to other HXTs, expression repressed by high glucose levels"	Verified	chr4:1154210-1155922	1154210-1155922	1.7%	4090.14	8146.48	11087.32	13588.73	17509.86	8687.32	6118.31	12338.03	13098.59	22.59	50.08	54.27	0.09	-1.44	Frag<80[1307]
YDR343C	HXT6	"High-affinity glucose transporter of the major facilitator superfamily, nearly identical to Hxt7p, expressed at high basal levels relative to other HXTs, repression of expression by high glucose requires SNF3"	Verified	chr4:1159602-1161314	1159602-1161314	1.7%	201.68	1378.15	1176.47	1613.45	1781.51	1210.08	789.92	1394.96	1495.80	2.92	5.66	6.20	0.10	-0.87	Frag<80[1309]
YDR344C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:1162000-1162443	1162000-1162443	98.6%	13.71	18.27	18.27	11.42	18.27	20.56	15.99	14.85	19.42	0.06	0.06	0.08	0.39	-0.88	Frag<80[1310,1311]
YDR345C	HXT3	"Low affinity glucose transporter of the major facilitator superfamily, expression is induced in low or high glucose conditions"	Verified	chr4:1162951-1164654	1162951-1164654	66.5%	2270.72	1424.16	1716.93	1632.28	157.85	24.69	1847.44	1674.60	91.27	6.82	6.80	0.38	-4.20	-4.16	Frag>80[1311,1312]
YDR346C	SVF1	"Protein with a potential role in cell survival pathways, required for the diauxic growth shift; expression in mammalian cells increases survival under conditions inducing apoptosis"	Verified	chr4:1167208-1168653	1167208-1168653	99.2%	607.77	475.34	473.25	386.13	332.46	223.04	541.56	429.69	277.75	2.00	1.74	1.15	-0.63	-0.46	Matched[1314]
YDR347W	MRP1	"Mitochondrial ribosomal protein of the small subunit; MRP1 exhibits genetic interactions with PET122, encoding a COX3-specific translational activator, and with PET123, encoding a small subunit mitochondrial ribosomal protein"	Verified	chr4:1169172-1170137	1169172-1170137	98.6%	288.81	312.97	370.73	298.27	401.19	318.22	300.89	334.50	359.71	1.11	1.36	1.49	0.10	0.33	Matched[1315]
YDR348C		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and bud neck; potential Cdc28p substrate	Uncharacterized	chr4:1170320-1171819	1170320-1171819	98.9%	217.69	219.03	187.36	167.14	172.53	146.92	218.36	177.25	159.73	0.81	0.72	0.66	-0.15	0.04	Matched[1316]
YDR349C	YPS7	"Putative GPI-anchored aspartic protease, located in the cytoplasm and endoplasmic reticulum"	Verified	chr4:1172380-1174170	1172380-1174170	98.8%	255.33	231.61	195.45	170.03	110.15	90.95	243.47	182.74	100.55	0.90	0.74	0.42	-0.86	-0.18	Frag>80[1317,1318,1319]
YDR350C	ATP22	"Mitochondrial inner membrane protein required for assembly of the F0 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis"	Verified	chr4:1176332-1178167	1176332-1178167	99.0%	75.91	74.26	66.56	69.86	80.31	79.21	75.08	68.21	79.76	0.28	0.28	0.33	0.23	0.50	Matched[1321]
YDR351W	SBE2	Protein involved in the transport of cell wall components from the Golgi to the cell surface; required for bud growth	Verified	chr4:1178659-1181253	1178659-1181253	98.8%	104.54	95.96	85.03	70.21	88.55	78.40	100.25	77.62	83.47	0.37	0.32	0.35	0.10	0.22	Matched[1322]
YDR352W		Putative protein of unknown function	Uncharacterized	chr4:1181794-1182747	1181794-1182747	98.8%	150.66	174.01	154.91	131.56	148.54	71.09	162.33	143.24	109.81	0.60	0.58	0.45	-0.38	-0.09	Frag>80[1323,1324]
YDR353W	TRR1	"Cytoplasmic thioredoxin reductase, key regulatory enzyme that determines the redox state of the thioredoxin system, which acts as a disulfide reductase system and protects cells against both oxidative and reductive stress"	Verified	chr4:1183292-1184251	1183292-1184251	97.6%	1586.56	980.53	1670.85	1251.53	1763.67	1360.36	1283.54	1461.19	1562.02	4.74	5.93	6.47	0.10	0.42	Matched[1325]
YDR354W	TRP4	"Anthranilate phosphoribosyl transferase of the tryptophan biosynthetic pathway, catalyzes the phosphoribosylation of anthranilate, subject to the general control system of amino acid biosynthesis"	Verified	chr4:1184740-1185882	1184740-1185882	98.8%	195.79	284.39	227.69	201.99	188.70	150.61	240.09	214.84	169.66	0.89	0.87	0.70	-0.34	-0.09	Matched[1326]
YDR354C-A		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data; completely overlaps TRP4; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr4:1185132-1185275	1185132-1185275	99.1%	182.19	252.26	259.27	154.16	112.12	140.15	217.23	206.72	126.13	0.80	0.84	0.52	-0.71	NaN	Matched[1326]
YDR356W	SPC110	"Inner plaque spindle pole body (SPB) component, ortholog of human kendrin; involved in connecting nuclear microtubules to SPB; interacts with Tub4p-complex and calmodulin; phosphorylated by Mps1p in cell cycle-dependent manner"	Verified	chr4:1186100-1188934	1186100-1188934	98.5%	152.61	150.10	127.53	121.44	123.59	91.35	151.36	124.49	107.47	0.56	0.51	0.45	-0.21	-0.14	Matched[1327]
YDR355C		Hypothetical protein; open reading frame overlaps 5' end of essential SPC110 gene encoding an inner plaque spindle pole body component	Dubious	chr4:1186060-1186362	1186060-1186362	98.5%	100.52	87.11	77.06	77.06	70.36	53.61	93.82	77.06	61.99	0.35	0.31	0.26	-0.31	-0.11	Covered/w/another[1327]
YDR357C		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern	Uncharacterized	chr4:1189192-1189560	1189192-1189560	99.5%	348.66	359.55	324.14	250.60	716.38	275.11	354.10	287.37	495.74	1.31	1.17	2.05	0.79	0.07	Matched[1328]
YDR358W	GGA1	"Golgi-localized protein with homology to gamma-adaptin, interacts with and regulates Arf1p and Arf2p in a GTP-dependent manner in order to facilitate traffic through the late Golgi"	Verified	chr4:1190052-1191725	1190052-1191725	98.7%	98.03	151.28	162.17	162.17	498.02	462.32	124.66	162.17	480.17	0.46	0.66	1.99	1.57	1.38	Matched[1329]
YDR360W	OPI7	"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified gene VID21/YDR359C."	Dubious	chr4:1194591-1194977	1194591-1194977	98.8%	47.10	78.50	54.95	52.33	31.40	49.72	62.80	53.64	40.56	0.23	0.22	0.17	-0.40	-0.13	Covered/w/another[1330]
YDR359C	EAF1	Component of the NuA4 histone acetyltransferase complex	Verified	chr4:1191929-1194877	1191929-1194877	99.1%	144.76	131.07	121.49	99.24	87.95	80.76	137.91	110.36	84.36	0.51	0.45	0.35	-0.39	0.27	Covered/w/another[1330]
YDR361C	BCP1	"Essential protein involved in nuclear export of Mss4p, which is a lipid kinase that generates phosphatidylinositol 4,5-biphosphate and plays a role in actin cytoskeleton organization and vesicular transport"	Verified	chr4:1195404-1196255	1195404-1196255	99.2%	330.10	154.99	191.67	124.23	23.66	5.92	242.54	157.95	14.79	0.90	0.64	0.06	-3.42	-3.79	Covered/w/another[1330]
YDR362C	TFC6	One of six subunits of RNA polymerase III transcription initiation factor complex (TFIIIC); part of TFIIIC TauB domain that binds BoxB promoter sites of tRNA and other genes; cooperates with Tfc3p in DNA binding; human homolog is TFIIIC-110	Verified	chr4:1196671-1198689	1196671-1198689	99.2%	73.89	83.38	63.41	43.94	91.37	61.91	78.64	53.67	76.64	0.29	0.22	0.32	0.51	0.59	Matched[1331]
YDR363W	ESC2	"Protein involved in mating-type locus silencing, interacts with Sir2p; probably functions to recruit or stabilize Sir proteins"	Verified	chr4:1199175-1200545	1199175-1200545	98.5%	96.97	88.09	90.31	80.69	101.42	92.53	92.53	85.50	96.97	0.34	0.35	0.40	0.18	0.53	Covered[1332]
YDR363W-A	SEM1	Component of the lid subcomplex of the regulatory subunit of the 26S proteasome; ortholog of human DSS1	Verified	chr4:1202120-1202389	1202120-1202389	98.3%	1119.17	991.05	1085.26	964.67	2652.85	1533.68	1055.11	1024.96	2093.26	3.89	4.16	8.67	1.03	0.42	Matched[1333]
YDR364C	CDC40	"Pre-mRNA splicing factor, important for catalytic step II of pre-mRNA splicing and plays a role in cell cycle progression; required for DNA synthesis during mitosis and meiosis; has WD repeats"	Verified	chr4:1202835-1204202	1202835-1204202	99.1%	104.00	113.59	83.35	69.33	53.84	38.35	108.79	76.34	46.10	0.40	0.31	0.19	-0.73	-0.45	Matched[1334]
YDR365C	ESF1	Nucleolar protein involved in pre-rRNA processing; depletion causes severely decreased 18S rRNA levels	Verified	chr4:1204489-1206375	1204489-1206375	99.4%	612.84	742.34	502.00	386.89	334.13	198.24	677.59	444.44	266.19	2.50	1.80	1.10	-0.74	-0.78	Frag>80[1335,1336]
YDR366C		Hypothetical protein	Uncharacterized	chr4:1212430-1212828	1212430-1212828	59.6%	42.05	37.84	37.84	50.46	37.84	16.82	39.94	44.15	27.33	0.15	0.18	0.11	-0.69	0.21	Frag<80[1338]
YDR367W		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern	Uncharacterized	chr4:1212840-1213606	1212840-1212869,1212971-1213606	99.1%	224.30	228.85	272.80	184.90	221.27	165.19	226.57	228.85	193.23	0.84	0.93	0.80	-0.24	-0.08	Frag>80[1338,1339]
YDR368W	YPR1	"2-methylbutyraldehyde reductase, may be involved in isoleucine catabolism"	Verified	chr4:1213896-1214834	1213896-1214834	98.7%	629.14	744.60	625.90	671.22	915.11	784.53	686.87	648.56	849.82	2.54	2.63	3.52	0.39	0.78	Matched[1340]
YDR369C	XRS2	"Protein required for DNA repair; component of the Mre11 complex, which is involved in double strand breaks, meiotic recombination, telomere maintenance, and checkpoint signaling"	Verified	chr4:1215008-1217572	1215008-1217572	99.3%	39.27	36.12	33.77	32.98	47.12	38.09	37.70	33.38	42.60	0.14	0.14	0.18	0.35	0.17	Matched[1341]
YDR370C		Putative protein of unknown function	Uncharacterized	chr4:1217774-1219102	1217774-1219102	99.1%	132.08	125.25	119.94	86.54	49.34	25.81	128.66	103.24	37.57	0.47	0.42	0.16	-1.46	-1.02	Matched[1342]
YDR371W	CTS2	Sporulation-specific chitinase	Uncharacterized	chr4:1219405-1220940	1219405-1220940	98.9%	104.68	130.36	133.65	106.00	185.00	111.26	117.52	119.82	148.13	0.43	0.49	0.61	0.31	0.24	Matched[1343]
YDR371C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completeley overlaps the uncharacterized gene CTS2/YDR371W; identified by expression profiling and mass spectrometry"	Dubious	chr4:1219501-1219605	1219501-1219605	98.3%	77.48	48.43	67.80	87.17	96.85	58.11	62.95	77.48	77.48	0.23	0.31	0.32	0.00	NaN	Covered/w/another[1343]
YDR372C	VPS74	Non-essential protein of unknown function involved in vacuolar protein sorting; belongs to a family of cytosolic Golgi-associated proteins suggesting that it may play a role in secretion; also detected in the nucleus	Verified	chr4:1221104-1222141	1221104-1222141	99.3%	684.77	720.66	650.82	599.42	451.99	262.85	702.72	625.12	357.42	2.59	2.54	1.48	-0.81	-0.97	Matched[1344]
YDR373W	FRQ1	N-myristoylated calcium-binding protein that may have a role in intracellular signaling through its regulation of the phosphatidylinositol 4-kinase Pik1p; member of the recoverin/frequenin branch of the EF-hand superfamily	Verified	chr4:1222751-1223323	1222751-1223323	98.8%	429.42	409.98	429.42	436.49	874.75	387.01	419.70	432.96	630.88	1.55	1.76	2.61	0.54	-0.00	Matched[1345]
YDR374C		Putative protein of unknown function	Uncharacterized	chr4:1223466-1224386	1223466-1224386	99.4%	2.19	2.19	2.19	2.19	7.65	10.93	2.19	2.19	9.29	0.01	0.01	0.04	2.09	1.07	Frag<80[1346,1347]
YDR374W-A		Putative protein of unknown function	Uncharacterized	chr4:1224749-1225018	1224749-1225018	98.5%	229.36	274.48	251.92	274.48	612.88	372.24	251.92	263.20	492.56	0.93	1.07	2.04	0.90	NaN	Matched[1347]
YDR375C	BCS1	"Protein of the mitochondrial inner membrane that functions as an ATP-dependent chaperone, required for the incorporation of the Rip1p and Qcr10p subunits into the cytochrome bc(1) complex; member of the CDC48/PAS1/SEC18 ATPase family"	Verified	chr4:1225158-1226528	1225158-1226528	99.1%	158.30	161.98	164.19	166.40	167.13	103.08	160.14	165.29	135.10	0.59	0.67	0.56	-0.29	0.01	Matched[1348]
YDR376W	ARH1	"Oxidoreductase of the mitochondrial inner membrane, involved in cytoplasmic and mitochondrial iron homeostasis and required for activity of Fe-S cluster-containing enzymes; one of the few mitochondrial proteins essential for viability"	Verified	chr4:1226814-1228295	1226814-1228295	98.7%	131.95	147.00	125.80	120.33	206.48	138.79	139.48	123.07	172.63	0.51	0.50	0.72	0.49	0.51	Frag>80[1349,1350]
YDR377W	ATP17	"Subunit f of the F0 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis"	Verified	chr4:1228603-1228908	1228603-1228908	98.8%	869.90	988.97	1005.51	1359.43	2517.09	1478.50	929.44	1182.47	1997.79	3.43	4.80	8.28	0.76	-0.42	Matched[1351]
YDR378C	LSM6	"Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA"	Verified	chr4:1229341-1229601	1229341-1229601	99.2%	981.17	768.71	985.03	753.26	710.77	463.54	874.94	869.15	587.16	3.23	3.53	2.43	-0.57	-1.10	Matched[1352]
YDR379W	RGA2	"GTPase-activating protein for the polarity-establishment protein Cdc42p; implicated in control of septin organization, pheromone response, and haploid invasive growth"	Verified	chr4:1230159-1233188	1230159-1233188	98.8%	118.63	140.69	105.93	112.28	138.35	128.66	129.66	109.11	133.50	0.48	0.44	0.55	0.29	0.28	Matched[1353]
YDR379C-A		Hypothetical protein identified by homology. See FEBS Letters [2000] 487:31-36.	Uncharacterized	chr4:1233270-1233509	1233270-1233509	99.1%	109.32	227.05	231.25	210.23	1135.25	458.30	168.19	220.74	796.78	0.62	0.90	3.30	1.85	0.91	Matched[1354]
YDR380W	ARO10	"Phenylpyruvate decarboxylase, catalyzes decarboxylation of phenylpyruvate to phenylacetaldehyde, which is the first specific step in the Ehrlich pathway"	Verified	chr4:1234210-1236117	1234210-1236117	98.9%	230.97	339.04	274.94	337.45	3085.29	2170.40	285.01	306.20	2627.85	1.05	1.24	10.89	3.10	3.10	Matched[1356]
YDR381W	YRA1	"Nuclear protein that binds to RNA and to Mex67p, required for export of poly(A)+ mRNA from the nucleus; member of the REF (RNA and export factor binding proteins) family; another family member, Yra2p, can substitute for Yra1p function"	Verified	chr4:1236550-1237996	1236550-1236834,1237601-1237996	98.1%	1796.86	1585.73	1954.08	1849.26	1456.95	943.35	1691.29	1901.67	1200.15	6.24	7.72	4.97	-0.66	-1.58	Frag>80[1357,1358]
YDR381C-A		"Protein of unknown function, localized to the mitochondrial outer membrane"	Verified	chr4:1238304-1238842	1238304-1238622,1238817-1238842	99.2%	277.54	400.24	280.46	219.11	484.97	239.56	338.89	249.79	362.26	1.25	1.01	1.50	0.54	-0.22	Matched[1359]
YDR382W	RPP2B	"Ribosomal protein P2 beta, a component of the ribosomal stalk, which is involved in the interaction between translational elongation factors and the ribosome; regulates the accumulation of P1 (Rpp1Ap and Rpp1Bp) in the cytoplasm"	Verified	chr4:1239484-1239816	1239484-1239816	96.9%	10990.19	8784.72	10379.97	9367.06	4971.61	3992.77	9887.46	9873.52	4482.19	36.50	40.08	18.57	-1.14	-2.09	Matched[1360]
YDR383C	NKP1	"Non-essential kinetochore protein, subunit of the Ctf19 central kinetochore complex (Ctf19p-Mcm21p-Okp1p-Mcm22p-Mcm16p-Ctf3p-Chl4p-Mcm19p-Nkp1p-Nkp2p-Ame1p-Mtw1p)"	Verified	chr4:1239952-1240668	1239952-1240668	99.4%	151.47	155.68	143.06	159.89	136.04	72.93	153.58	151.47	104.49	0.57	0.61	0.43	-0.54	-0.87	Matched[1361]
YDR384C	ATO3	"Plasma membrane protein, regulation pattern suggests a possible role in export of ammonia from the cell; phosphorylated in mitochondria; member of the TC 9.B.33 YaaH family of putative transporters"	Verified	chr4:1241196-1242023	1241196-1242023	98.5%	214.54	254.99	192.47	129.95	79.69	39.23	234.77	161.21	59.46	0.87	0.65	0.25	-1.44	-1.17	Matched[1362]
YDR385W	EFT2	"Elongation factor 2 (EF-2), also encoded by EFT1; catalyzes ribosomal translocation during protein synthesis; contains diphthamide, the unique posttranslationally modified histidine residue specifically ADP-ribosylated by diphtheria toxin"	Verified	chr4:1243222-1245750	1243222-1245750	1.7%	3531.46	2741.53	2811.23	2393.03	859.63	906.10	3136.50	2602.13	882.87	11.58	10.56	3.66	-1.56	-1.72	Frag<80[1364,1365,1366,1367,1368,1369]
YDR386W	MUS81	"Helix-hairpin-helix protein, involved in DNA repair and replication fork stability; functions as an endonuclease in complex with Mms4p; interacts with Rad54p"	Verified	chr4:1246076-1247974	1246076-1247974	98.6%	73.19	75.86	61.97	49.15	71.58	35.79	74.52	55.56	53.69	0.28	0.23	0.22	-0.05	0.10	Matched[1370]
YDR387C		"Putative transporter, member of the sugar porter family; YDR387C is not an essential gene"	Uncharacterized	chr4:1248146-1249813	1248146-1249813	98.8%	81.34	121.40	80.12	92.26	126.86	108.05	101.37	86.19	117.45	0.37	0.35	0.49	0.45	0.38	Matched[1371]
YDR388W	RVS167	"Actin-associated protein, subunit of a complex (Rvs161p-Rvs167p) involved in regulation of actin cytoskeleton, endocytosis, and viability following starvation or osmotic stress; homolog of mammalian amphiphysin"	Verified	chr4:1250178-1251626	1250178-1251626	98.4%	572.38	756.86	566.77	621.48	807.37	822.80	664.62	594.13	815.08	2.45	2.41	3.38	0.46	0.86	Matched[1372]
YDR389W	SAC7	"GTPase activating protein (GAP) for Rho1p, involved in signaling to the actin cytoskeleton, null mutations suppress tor2 mutations and temperature sensitive mutations in actin; potential Cdc28p substrate"	Verified	chr4:1252529-1254493	1252529-1254493	98.8%	155.01	139.05	152.95	114.84	138.02	101.97	147.03	133.90	119.99	0.54	0.54	0.50	-0.16	0.51	Covered/w/another[1373]
YDR390C	UBA2	"Nuclear protein that acts as a heterodimer with Aos1p to activate Smt3p (SUMO) before its conjugation to proteins (sumoylation), which may play a role in protein targeting; essential for viability"	Verified	chr4:1254929-1256839	1254929-1256839	99.1%	236.53	214.35	213.82	211.18	132.52	132.52	225.44	212.50	132.52	0.83	0.86	0.55	-0.68	-0.18	Covered/w/another[1373]
YDR391C		Hypothetical protein	Uncharacterized	chr4:1257350-1258048	1257350-1258048	99.0%	154.61	291.89	200.85	244.20	671.92	442.17	223.25	222.53	557.05	0.82	0.90	2.31	1.32	1.08	Frag>80[1374,1375,1376]
YDR392W	SPT3	"Subunit of the SAGA and SAGA-like transcriptional regulatory complexes, interacts with Spt15p to activate transcription of some RNA polymerase II-dependent genes, also functions to inhibit transcription at some promoters"	Verified	chr4:1258688-1259701	1258688-1259701	98.3%	138.40	125.37	130.38	115.34	187.55	129.38	131.88	122.86	158.46	0.49	0.50	0.66	0.37	0.37	Covered/w/another[1377]
YDR393W	SHE9	"Mitochondrial inner membrane protein required for normal mitochondrial morphology, may be involved in fission of the inner membrane; forms a homo-oligomeric complex"	Verified	chr4:1259893-1261263	1259893-1261263	98.6%	105.03	125.74	115.39	105.03	135.36	104.29	115.39	110.21	119.83	0.43	0.45	0.50	0.12	0.17	Covered/w/another[1377]
YDR394W	RPT3	One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; substrate of N-acetyltransferase B	Verified	chr4:1261673-1262959	1261673-1262959	98.7%	500.77	415.73	543.29	481.09	727.54	537.78	458.25	512.19	632.66	1.69	2.08	2.62	0.30	0.87	Matched[1378]
YDR395W	SXM1	"Nuclear transport factor (karyopherin) involved in protein transport between the cytoplasm and nucleoplasm; similar to Nmd5p, Cse1p, Lph2p, and the human cellular apoptosis susceptibility protein, CAS1"	Verified	chr4:1263316-1266150	1263316-1266150	98.9%	302.66	234.92	239.56	214.25	58.11	58.46	268.79	226.90	58.29	0.99	0.92	0.24	-1.96	-1.10	Frag>80[1379,1380]
YDR396W		Dubious open reading frame unlikely to encode a functional protein; extensively overlaps essential NCB2 gene encoding the beta subunit of the NC2 dimeric histone-fold complex	Dubious	chr4:1266287-1266787	1266287-1266787	99.3%	550.80	394.00	522.66	387.97	331.69	178.91	472.40	455.31	255.30	1.74	1.85	1.06	-0.83	-0.30	Matched[1380]
YDR397C	NCB2	Subunit of a heterodimeric NC2 transcription regulator complex with Bur6p; complex binds to TBP and can repress transcription by preventing preinitiation complex assembly or stimulate activated transcription; homologous to human NC2beta	Verified	chr4:1266358-1266890	1266358-1266761,1266854-1266890	99.3%	548.15	401.98	511.61	365.44	338.03	189.57	475.07	438.52	263.80	1.75	1.78	1.09	-0.73	-0.85	Frag>80[1380,1381]
YDR398W	UTP5	"Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA"	Verified	chr4:1267463-1269394	1267463-1269394	98.6%	225.68	148.53	160.07	114.94	19.94	11.02	187.10	137.51	15.48	0.69	0.56	0.06	-3.15	-2.42	Frag>80[1381,1382,1383]
YDR399W	HPT1	"Dimeric hypoxanthine-guanine phosphoribosyltransferase, catalyzes the formation of both inosine monophosphate and guanosine monophosphate; mutations in the human homolog HPRT1 can cause Lesch-Nyhan syndrome and Kelley-Seegmiller syndrome"	Verified	chr4:1270060-1270725	1270060-1270725	98.6%	1596.34	947.45	1440.97	737.24	173.65	30.46	1271.90	1089.11	102.06	4.70	4.42	0.42	-3.42	-4.02	Matched[1384]
YDR400W	URH1	"Uridine nucleosidase (uridine-cytidine N-ribohydrolase), cleaves N-glycosidic bonds in nucleosides; involved in recycling pyrimidine deoxy- and ribonucleosides via the pyrimidine salvage pathway"	Verified	chr4:1271055-1272077	1271055-1272077	98.9%	170.09	171.08	174.04	163.16	114.71	63.29	170.58	168.60	89.00	0.63	0.68	0.37	-0.92	-0.57	Matched[1385]
YDR401W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:1272215-1272778	1272215-1272778	99.1%	14.32	12.53	10.74	5.37	14.32	7.16	13.42	8.05	10.74	0.05	0.03	0.04	0.42	0.03	Overlap[1385]
YDR402C	DIT2	"N-formyltyrosine oxidase, sporulation-specific microsomal enzyme involved in the production of N,N-bisformyl dityrosine required for spore wall maturation, homologous to cytochrome P-450s"	Verified	chr4:1272226-1273695	1272226-1273695	98.9%	9.63	8.25	9.63	2.06	8.25	3.44	8.94	5.85	5.85	0.03	0.02	0.02	0.00	0.98	Overlap[1385]
YDR403W	DIT1	"Sporulation-specific enzyme required for spore wall maturation, involved in the production of a soluble LL-dityrosine-containing precursor of the spore wall; transcripts accumulate at the time of prospore enclosure"	Verified	chr4:1274594-1276204	1274594-1276204	98.8%	7.54	6.28	8.79	9.42	28.90	23.24	6.91	9.11	26.07	0.03	0.04	0.11	1.52	0.95	Frag<80[1386]
YDR404C	RPB7	RNA polymerase II subunit B16; forms two subunit dissociable complex with Rpb4p	Verified	chr4:1276646-1277161	1276646-1277161	99.0%	395.37	393.41	463.87	379.71	544.12	295.55	394.39	421.79	419.83	1.46	1.71	1.74	-0.01	0.15	Matched[1387]
YDR405W	MRP20	Mitochondrial ribosomal protein of the large subunit	Verified	chr4:1277638-1278429	1277638-1278429	98.2%	266.18	258.47	264.89	232.75	254.61	171.02	262.32	248.82	212.82	0.97	1.01	0.88	-0.23	-0.09	Matched[1388]
YDR406W	PDR15	"Plasma membrane ATP binding cassette (ABC) transporter, multidrug transporter and general stress response factor implicated in cellular detoxification; regulated by Pdr1p, Pdr3p and Pdr8p; promoter contains a PDR responsive element"	Verified	chr4:1279202-1283791	1279202-1283791	98.7%	104.90	113.07	183.96	140.90	446.76	540.62	108.98	162.43	493.69	0.40	0.66	2.05	1.60	2.15	Frag>80[1389,1390]
YDR406W-A		Dubious open reading frame unlikely to encode a functional protein; identified by fungal homology and RT-PCR	Dubious	chr4:1283791-1284036	1283791-1284036	99.5%	81.70	122.55	114.38	40.85	408.51	204.26	102.13	77.62	306.38	0.38	0.32	1.27	1.98	NaN	Covered/w/another[1391]
YDR407C	TRS120	One of 10 subunits of the transport protein particle (TRAPP) complex of the cis-Golgi which mediates vesicle docking and fusion; involved in endoplasmic reticulum (ER) to Golgi membrane traffic	Verified	chr4:1284061-1287930	1284061-1287930	99.1%	106.85	116.76	110.24	89.91	97.47	92.52	111.81	100.08	95.00	0.41	0.41	0.39	-0.08	0.18	Matched[1391]
YDR408C	ADE8	"Phosphoribosyl-glycinamide transformylase, catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway"	Verified	chr4:1288207-1288851	1288207-1288851	98.8%	870.70	773.43	825.21	688.72	368.68	219.64	822.07	756.96	294.16	3.03	3.07	1.22	-1.36	-1.43	Frag>80[1392,1393]
YDR409W	SIZ1	SUMO/Smt3 ligase that promotes the attachment of sumo (Smt3p; small ubiquitin-related modifier) to proteins; binds Ubc9p and may bind septins; specifically required for sumoylation of septins in vivo; localized to the septin ring	Verified	chr4:1289398-1292112	1289398-1292112	97.8%	79.06	94.50	76.43	60.24	94.12	97.51	86.78	68.33	95.81	0.32	0.28	0.40	0.49	0.84	Frag>80[1394,1395]
YDR410C	STE14	"Farnesyl cysteine-carboxyl methyltransferase, mediates the carboxyl methylation step during C-terminal CAAX motif processing of a-factor and RAS proteins in the endoplasmic reticulum, localizes to the ER membrane"	Verified	chr4:1292364-1293083	1292364-1293083	98.8%	333.27	291.09	310.78	271.40	201.09	99.84	312.18	291.09	150.47	1.15	1.18	0.62	-0.95	-1.35	Matched[1396]
YDR411C	DFM1	ER localized derlin-like family member involved in ER stress and homeostasis; not involved in ERAD or substrate retrotranslocation; interacts with CDC48; contains four transmembrane domains and two SHP boxes	Verified	chr4:1293361-1294386	1293361-1294386	98.8%	260.46	265.40	268.35	196.33	251.58	129.24	262.93	232.34	190.41	0.97	0.94	0.79	-0.29	-0.23	Matched[1397]
YDR412W		Protein required for cell viability	Uncharacterized	chr4:1294685-1295392	1294685-1295392	98.0%	330.13	220.57	201.83	193.18	40.37	12.97	275.35	197.50	26.67	1.02	0.80	0.11	-2.89	-2.70	Covered/w/another[1398]
YDR413C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the essential uncharacterized ORF YDR412W that is implicated in rRNA processing"	Dubious	chr4:1294828-1295403	1294828-1295403	97.9%	363.37	219.79	228.66	209.16	39.00	12.41	291.58	218.91	25.70	1.08	0.89	0.11	-3.09	-0.31	Covered/w/another[1398]
YDR414C	ERD1	"Predicted membrane protein required for the retention of lumenal endoplasmic reticulum proteins; mutants secrete the endogenous ER protein, BiP (Kar2p)"	Verified	chr4:1295590-1296678	1295590-1296678	98.9%	155.08	144.86	159.72	111.43	137.43	55.72	149.97	135.58	96.58	0.55	0.55	0.40	-0.49	-1.08	Covered/w/another[1398]
YDR415C		Putative protein of unknown function	Uncharacterized	chr4:1297029-1298153	1297029-1298153	99.0%	108.60	137.32	108.60	97.83	192.06	106.80	122.96	103.21	149.43	0.45	0.42	0.62	0.53	0.79	Covered/w/another[1398]
YDR416W	SYF1	Component of the spliceosome complex involved in pre-mRNA splicing; involved in regulation of cell cycle progression; similar to Drosophila crooked neck protein	Verified	chr4:1298424-1301003	1298424-1301003	98.7%	67.15	68.33	58.51	42.81	51.05	37.70	67.74	50.66	44.38	0.25	0.21	0.18	-0.19	0.21	Matched[1399]
YDR418W	RPL12B	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl12Ap; rpl12a rpl12b double mutant exhibits slow growth and slow translation; has similarity to E. coli L11 and rat L12 ribosomal proteins"	Verified	chr4:1301608-1302105	1301608-1302105	75.5%	7765.17	6326.98	7119.19	5545.41	1640.23	1119.18	7046.08	6332.30	1379.71	26.01	25.70	5.72	-2.20	-2.96	Frag>80[1400,1401,1402]
YDR417C		Hypothetical protein	Dubious	chr4:1301547-1301918	1301547-1301918	84.0%	6429.03	5151.55	6307.36	4799.36	1443.97	1014.94	5790.29	5553.36	1229.46	21.37	22.54	5.09	-2.18	-0.00	Frag>80[1400,1401]
YDR419W	RAD30	"DNA polymerase eta, involved in the predominantly error-free bypass replication of DNA lesions, catalyzes the efficient and accurate synthesis of DNA opposite cyclobutane pyrimidine dimers; homolog of human POLH and bacterial DinB proteins"	Verified	chr4:1303166-1305064	1303166-1305064	98.7%	53.33	61.87	46.93	45.87	46.93	31.47	57.60	46.40	39.20	0.21	0.19	0.16	-0.24	-0.13	Matched[1403]
YDR420W	HKR1	"Serine/threonine rich cell surface protein; osmosensor; involved in the regulation of cell wall beta-1,3 glucan synthesis, bud site selection and hyperosmotic response; overexpression confers resistance to Hansenula mrakii killer toxin HM-1"	Verified	chr4:1306259-1311667	1306259-1311667	82.2%	128.95	116.57	113.42	90.46	42.08	45.23	122.76	101.94	43.66	0.45	0.41	0.18	-1.22	-0.25	Frag<80[1404]
YDR421W	ARO80	Zinc finger transcriptional activator of the Zn2Cys6 family; activates transcription of aromatic amino acid catabolic genes in the presence of aromatic amino acids	Verified	chr4:1312032-1314884	1312032-1314884	98.6%	52.59	52.59	40.16	46.55	107.32	87.78	52.59	43.36	97.55	0.19	0.18	0.40	1.17	1.54	Covered/w/another[1405]
YDR422C	SIP1	"Alternate beta-subunit of the Snf1p kinase complex, may confer substrate specificity; vacuolar protein containing KIS (Kinase-Interacting Sequence) and ASC (Association with Snf1 kinase Complex) domains involved in protein interactions"	Verified	chr4:1315318-1317765	1315318-1317765	98.9%	90.43	102.81	90.84	75.15	120.98	97.03	96.62	82.99	109.01	0.36	0.34	0.45	0.39	0.83	Covered/w/another[1405]
YDR423C	CAD1	"AP-1-like bZIP transcriptional activator involved in stress responses, iron metabolism, and pleiotropic drug resistance; controls a set of genes involved in stabilizing proteins; binds consensus sequence TTACTAA; 5' UTR contains uORFs"	Verified	chr4:1318038-1319267	1318038-1319267	99.1%	137.05	128.03	120.64	119.00	217.48	176.45	132.54	119.82	196.96	0.49	0.49	0.82	0.72	1.23	Covered/w/another[1405]
YDR424C	DYN2	"Cytoplasmic light chain dynein, microtubule motor protein; proposed to be involved in the assembly of the nuclear pore complex"	Verified	chr4:1319379-1319833	1319379-1319609,1319690-1319712,1319809-1319833	99.4%	302.84	306.44	295.63	259.58	540.78	277.60	304.64	277.60	409.19	1.12	1.13	1.70	0.56	-0.09	Matched[1406]
YDR425W	SNX41	"Sorting nexin, involved in the retrieval of late-Golgi SNAREs from the post-Golgi endosome to the trans-Golgi network; forms a complex with Snx4p and Atg20p"	Verified	chr4:1320056-1321933	1320056-1321933	99.2%	72.47	71.94	74.08	79.45	131.52	113.81	72.20	76.77	122.67	0.27	0.31	0.51	0.68	1.32	Matched[1407]
YDR426C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF SNX41"	Dubious	chr4:1321621-1321998	1321621-1321998	97.4%	100.54	97.83	97.83	65.22	233.70	122.28	99.18	81.52	177.99	0.37	0.33	0.74	1.13	1.52	Covered/w/another[1407]
YDR427W	RPN9	"Non-ATPase regulatory subunit of the 26S proteasome, has similarity to putative proteasomal subunits in other species; null mutant is temperature sensitive and exhibits cell cycle and proteasome assembly defects"	Verified	chr4:1322197-1323378	1322197-1323378	99.2%	502.52	437.68	517.03	504.23	953.86	571.63	470.10	510.63	762.74	1.74	2.07	3.16	0.58	0.38	Matched[1408]
YDR428C		Putative alpha/beta-serine hydrolase belonging to the subfamily of hormone-sensitive lipase-like hydrolases	Uncharacterized	chr4:1323446-1324231	1323446-1324231	99.4%	129.33	128.05	107.56	97.32	92.19	51.22	128.69	102.44	71.71	0.48	0.42	0.30	-0.51	-0.10	Matched[1409]
YDR429C	TIF35	"Subunit of the core complex of translation initiation factor 3(eIF3), which is essential for translation"	Verified	chr4:1324469-1325293	1324469-1325293	99.2%	1449.58	960.68	1201.47	1069.46	411.90	240.78	1205.13	1135.47	326.34	4.45	4.61	1.35	-1.80	-1.93	Matched[1410]
YDR431W		"Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:1328382-1328693	1328382-1328693	99.1%	12.93	16.17	25.87	45.26	38.80	29.10	14.55	35.57	33.95	0.05	0.14	0.14	-0.07	0.08	Overlap[1411]
YDR430C	CYM1	"Lysine-specific metalloprotease of the mitochondrial intermembrane space, member of the pitrilysin family; degrades proteins and presequence peptides cleaved from imported proteins; required for normal mitochondrial morphology"	Verified	chr4:1325493-1328462	1325493-1328462	99.1%	126.06	97.86	125.72	110.77	166.50	156.98	111.96	118.25	161.74	0.41	0.48	0.67	0.45	0.84	Matched[1411]
YDR432W	NPL3	RNA-binding protein that carries poly(A)+ mRNA from the nucleus into the cytoplasm; dissociation from mRNAs is promoted by Mtr10p; phosphorylated by Sky1p in the cytoplasm	Verified	chr4:1328775-1330019	1328775-1330019	98.1%	1108.93	821.46	1194.10	1115.48	1776.41	1680.59	965.19	1154.79	1728.50	3.56	4.69	7.16	0.58	0.72	Matched[1412]
YDR433W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:1329592-1330032	1329592-1330032	96.9%	1254.17	898.51	1293.95	1205.03	1981.87	1675.34	1076.34	1249.49	1828.60	3.97	5.07	7.58	0.55	-0.14	Covered/w/another[1412]
YDR434W	GPI17	Transmembrane protein subunit of the glycosylphosphatidylinositol transamidase complex that adds GPIs to newly synthesized proteins; human PIG-Sp homolog	Verified	chr4:1331229-1332833	1331229-1332833	99.0%	213.91	200.07	217.06	211.39	238.45	153.51	206.99	214.22	195.98	0.76	0.87	0.81	-0.13	-0.15	Matched[1414]
YDR435C	PPM1	"Carboxyl methyl transferase, methylates the C terminus of the protein phosphatase 2A catalytic subunit (Pph21p or Pph22p), which is important for complex formation with regulatory subunits"	Verified	chr4:1332975-1333961	1332975-1333961	99.0%	124.82	149.38	128.92	136.08	268.06	188.26	137.10	132.50	228.16	0.51	0.54	0.95	0.78	0.51	Matched[1415]
YDR436W	PPZ2	"Serine/threonine protein phosphatase Z, isoform of Ppz1p; involved in regulation of potassium transport, which affects osmotic stability, cell cycle progression, and halotolerance"	Verified	chr4:1334813-1336945	1334813-1336945	98.6%	60.84	68.92	79.38	81.76	163.51	168.74	64.88	80.57	166.13	0.24	0.33	0.69	1.04	1.19	Matched[1416]
YDR437W	GPI19	"Subunit of GPI-GlcNAc transferase involved in synthesis of N-acetylglucosaminyl phosphatidylinositol (GlcNAc-PI), which is the first intermediate in glycosylphosphatidylinositol (GPI) anchor synthesis, shares similarity with mammalian PIG-P"	Verified	chr4:1337344-1337766	1337344-1337766	98.8%	55.04	31.11	31.11	35.90	35.90	33.50	43.08	33.50	34.70	0.16	0.14	0.14	0.05	0.58	Covered/w/another[1417]
YDR438W	THI74	Mitochondrial transporter repressible by thiamine	Verified	chr4:1338266-1339378	1338266-1339378	99.1%	69.81	77.07	38.08	47.15	68.91	46.24	73.44	42.61	57.57	0.27	0.17	0.24	0.43	-0.07	Covered/w/another[1417]
YDR439W	LRS4	Protein involved in rDNA silencing; positively charged coiled-coil protein with limited similarity to myosin	Verified	chr4:1339668-1340711	1339668-1340711	98.8%	85.34	75.64	70.79	63.03	86.31	66.91	80.49	66.91	76.61	0.30	0.27	0.32	0.20	0.43	Covered/w/another[1417]
YDR440W	DOT1	"Nucleosomal histone H3-Lys79 methylase, associates with transcriptionally active genes, functions in gene silencing at telomeres, most likely by directly modulating chromatin structure and Sir protein localization"	Verified	chr4:1342485-1344233	1342485-1344233	98.7%	113.00	90.98	87.50	75.91	39.98	39.40	101.99	81.71	39.69	0.38	0.33	0.16	-1.04	-0.73	Covered/w/another[1418]
YDR441C	APT2	"Apparent pseudogene, not transcribed or translated under normal conditions; encodes a protein with similarity to adenine phosphoribosyltransferase, but artificially expressed protein exhibits no enzymatic activity"	Verified	chr4:1344509-1345054	1344509-1345054	98.8%	209.44	226.12	190.90	100.08	124.18	81.55	217.78	145.49	102.87	0.80	0.59	0.43	-0.50	-0.90	Covered/w/another[1418]
YDR442W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:1345639-1346031	1345639-1346031	98.6%	108.40	141.95	100.66	129.05	136.79	116.14	125.17	114.85	126.47	0.46	0.47	0.52	0.14	0.44	Covered/w/another[1418]
YDR443C	SSN2	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; required for stable association of Srb10p-Srb11p kinase; essential for transcriptional regulation	Verified	chr4:1345668-1349930	1345668-1349930	98.7%	67.49	82.46	67.97	89.83	42.78	76.52	74.98	78.90	59.65	0.28	0.32	0.25	-0.40	0.24	Covered/w/another[1418]
YDR444W		Putative protein of unknown function	Uncharacterized	chr4:1350282-1352345	1350282-1352345	98.5%	128.88	122.00	126.42	93.96	58.54	53.13	125.44	110.19	55.83	0.46	0.45	0.23	-0.98	-0.40	Matched[1419]
YDR445C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:1352174-1352581	1352174-1352581	80.0%	119.51	113.38	85.80	67.42	64.35	33.71	116.45	76.61	49.03	0.43	0.31	0.20	-0.64	-0.14	Overlap[1419]
YDR446W	ECM11	"Non-essential protein apparently involved in meiosis, GFP fusion protein is present in discrete clusters in the nucleus throughout mitosis; may be involved in maintaining chromatin structure"	Verified	chr4:1353717-1354625	1353717-1354625	98.7%	18.95	14.49	6.69	11.15	3.34	18.95	16.72	8.92	11.15	0.06	0.04	0.05	0.32	-1.00	Frag<80[1420]
YDR447C	RPS17B	Ribosomal protein 51 (rp51) of the small (40s) subunit; nearly identical to Rps17Ap and has similarity to rat S17 ribosomal protein	Verified	chr4:1354821-1355545	1354821-1355228,1355543-1355545	46.8%	6574.77	5154.75	5326.40	4468.14	1581.27	1492.85	5864.76	4897.27	1537.06	21.65	19.88	6.37	-1.67	-3.24	Frag>80[1420,1421]
YDR448W	ADA2	"Transcription coactivator, component of the ADA and SAGA transcriptional adaptor/HAT (histone acetyltransferase) complexes"	Verified	chr4:1356057-1357361	1356057-1357361	98.4%	94.19	88.74	77.06	61.49	75.51	76.28	91.46	69.28	75.90	0.34	0.28	0.31	0.13	0.23	Matched[1422]
YDR449C	UTP6	"Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA"	Verified	chr4:1357572-1358894	1357572-1358894	99.5%	174.73	101.80	120.03	91.17	10.64	7.60	138.27	105.60	9.12	0.51	0.43	0.04	-3.53	-3.03	Matched[1423]
YDR450W	RPS18A	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps18Bp and has similarity to E. coli S13 and rat S18 ribosomal proteins	Verified	chr4:1359915-1360790	1359915-1359961,1360397-1360790	53.1%	8028.47	6670.46	6939.50	6888.26	2536.65	2698.93	7349.47	6913.88	2617.79	27.13	28.06	10.85	-1.40	-1.97	Matched[1424]
YDR451C	YHP1	"One of two homeobox transcriptional repressors (see also Yox1p), that bind to Mcm1p and to early cell cycle box (ECB) elements of cell cycle regulated genes, thereby restricting ECB-mediated transcription to the M/G1 interval"	Verified	chr4:1361112-1362173	1361112-1362173	98.7%	208.84	242.22	180.24	156.40	116.34	59.13	225.53	168.32	87.73	0.83	0.68	0.36	-0.94	-0.80	Matched[1425]
YDR452W	PPN1	Vacuolar endopolyphosphatase with a role in phosphate metabolism; functions as a homodimer	Verified	chr4:1362870-1364894	1362870-1364894	98.5%	753.16	787.24	718.59	718.09	669.98	614.36	770.20	718.34	642.17	2.84	2.92	2.66	-0.16	0.39	Matched[1426]
YDR453C	TSA2	"Stress inducible cytoplasmic thioredoxin peroxidase; cooperates with Tsa1p in the removal of reactive oxygen, nitrogen and sulfur species using thioredoxin as hydrogen donor; deletion enhances the mutator phenotype of tsa1 mutants"	Verified	chr4:1365064-1365654	1365064-1365654	98.8%	46.24	123.31	34.25	46.24	1099.55	633.70	84.78	40.25	866.62	0.31	0.16	3.59	4.43	1.57	Frag>80[1427,1428]
YDR454C	GUK1	"Guanylate kinase, converts GMP to GDP; required for growth and mannose outer chain elongation of cell wall N-linked glycoproteins"	Verified	chr4:1366256-1366819	1366256-1366819	99.0%	1522.73	1304.17	1393.74	1393.74	927.97	872.43	1413.45	1393.74	900.20	5.22	5.66	3.73	-0.63	-0.45	Frag>80[1429,1430]
YDR456W	NHX1	"Endosomal Na+/H+ exchanger, required for intracellular sequestration of Na+; required for osmotolerance to acute hypertonic shock"	Verified	chr4:1367477-1369378	1367477-1369378	99.1%	261.02	241.92	255.18	209.03	135.28	107.17	251.47	232.11	121.23	0.93	0.94	0.50	-0.94	-0.62	Matched[1431]
YDR455C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YDR456W"	Dubious	chr4:1367365-1367673	1367365-1367673	99.0%	88.30	75.21	150.43	121.00	62.13	52.32	81.76	135.71	57.23	0.30	0.55	0.24	-1.25	-0.02	Covered/w/another[1431]
YDR457W	TOM1	E3 ubiquitin ligase of the hect-domain class; has a role in mRNA export from the nucleus and may regulate transcriptional coactivators	Verified	chr4:1369782-1379588	1369782-1379588	98.9%	117.99	114.07	91.17	93.13	50.23	72.09	116.03	92.15	61.16	0.43	0.37	0.25	-0.59	-0.48	Frag>80[1432,1433]
YDR458C	HEH2	"Inner nuclear membrane (INM) protein; contains helix-extension-helix (HEH) motif, nuclear localization signal sequence; targeting to the INM requires the Srp1p-Kap95p karyopherins and the Ran cycle"	Verified	chr4:1380047-1382038	1380047-1382038	99.3%	154.73	184.57	140.07	150.18	170.41	140.07	169.65	145.13	155.24	0.63	0.59	0.64	0.10	0.35	Covered/w/another[1434]
YDR459C	PFA5	Palmitoyltransferase with autoacylation activity; likely functions in pathway(s) outside Ras; member of a family of putative palmitoyltransferases containing an Asp-His-His-Cys-cysteine rich (DHHC-CRD) domain	Verified	chr4:1382311-1383435	1382311-1383435	99.0%	120.31	117.61	114.92	91.58	85.29	58.36	118.96	103.25	71.82	0.44	0.42	0.30	-0.52	0.16	Covered/w/another[1434]
YDR460W	TFB3	"Subunit of TFIIH and nucleotide excision repair factor 3 complexes, involved in transcription initiation, required for nucleotide excision repair; ring finger protein similar to mammalian CAK and TFIIH subunit"	Verified	chr4:1383803-1384768	1383803-1384768	98.4%	104.19	130.50	136.81	113.66	154.70	104.19	117.34	125.24	129.45	0.43	0.51	0.54	0.05	0.19	Matched[1435]
YDR461W	MFA1	"Mating pheromone a-factor, made by a cells; interacts with alpha cells to induce cell cycle arrest and other responses leading to mating; biogenesis involves C-terminal modification, N-terminal proteolysis, and export; also encoded by MFA2"	Verified	chr4:1385168-1385278	1385168-1385278	98.4%	6858.45	9559.71	7819.92	5448.30	3992.37	3204.88	8209.08	6634.11	3598.63	30.30	26.93	14.91	-0.88	-1.26	Matched[1436]
YDR461C-A		Putative protein of unknown function	Uncharacterized	chr4:1385516-1385758	1385516-1385758	98.8%	199.90	212.39	162.42	191.57	1007.81	674.65	206.14	176.99	841.23	0.76	0.72	3.49	2.25	NaN	Matched[1436]
YDR462W	MRPL28	Mitochondrial ribosomal protein of the large subunit	Verified	chr4:1386065-1386508	1386065-1386508	98.2%	227.00	249.93	353.11	268.27	488.39	309.54	238.46	310.69	398.97	0.88	1.26	1.65	0.36	0.66	Matched[1437]
YDR463W	STP1	"Transcription factor, activated by proteolytic processing in response to signals from the SPS sensor system for external amino acids; activates transcription of amino acid permease genes and may have a role in tRNA processing"	Verified	chr4:1386808-1388367	1386808-1388367	98.7%	170.18	200.71	165.63	165.63	218.25	194.21	185.44	165.63	206.23	0.68	0.67	0.85	0.32	0.95	Matched[1438]
YDR464W	SPP41	Protein involved in negative regulation of expression of spliceosome components PRP4 and PRP3	Verified	chr4:1388864-1393171	1388864-1393171	98.4%	176.68	134.46	116.06	110.39	52.60	79.49	155.57	113.23	66.05	0.57	0.46	0.27	-0.78	-0.31	Covered/w/another[1439]
YDR464C-A		"Dubious open reading frame unlikely to encode a functional protein; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr4:1392484-1392672	1392484-1392672	98.7%	208.98	133.96	107.17	112.53	48.23	75.02	171.47	109.85	61.62	0.63	0.45	0.26	-0.83	NaN	Covered/w/another[1439]
YDR465C	RMT2	Arginine methyltransferase; ribosomal protein L12 is a substrate	Verified	chr4:1393328-1394566	1393328-1394566	99.2%	271.64	111.42	177.30	154.52	19.52	4.88	191.53	165.91	12.20	0.71	0.67	0.05	-3.77	-3.49	Covered/w/another[1439]
YDR466W	PKH3	"Protein kinase with similarity to mammalian phosphoinositide-dependent kinase 1 (PDK1) and yeast Pkh1p and Pkh2p, two redundant upstream activators of Pkc1p; identified as a multicopy suppressor of a pkh1 pkh2 double mutant"	Verified	chr4:1395113-1397809	1395113-1397809	98.8%	151.92	145.54	123.79	128.29	152.30	141.42	148.73	126.04	146.86	0.55	0.51	0.61	0.22	0.56	Matched[1440]
YDR467C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:1397575-1397901	1397575-1397901	99.0%	225.60	250.32	185.42	145.25	336.85	259.59	237.96	165.34	298.22	0.88	0.67	1.24	0.85	-0.14	Covered/w/another[1440]
YDR468C	TLG1	Essential t-SNARE that forms a complex with Tlg2p and Vti1p and mediates fusion of endosome-derived vesicles with the late Golgi; binds the docking complex VFT (Vps fifty-three) through interaction with Vps51p	Verified	chr4:1398018-1398692	1398018-1398692	99.5%	221.78	275.37	236.67	194.99	482.26	242.62	248.57	215.83	362.44	0.92	0.88	1.50	0.75	0.20	Frag<80[1441]
YDR469W	SDC1	"Subunit of the COMPASS (Set1C) complex, which methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres; has similarity to C. elegans Dpy-30"	Verified	chr4:1399007-1399534	1399007-1399534	98.8%	243.35	228.02	193.53	199.28	216.53	107.31	235.69	196.41	161.92	0.87	0.80	0.67	-0.28	-0.83	Covered/w/another[1442]
YDR470C	UGO1	Protein of unknown function; outer membrane component of the mitochondrial fusion machinery; Ugo1p bind directly to Fzo1p and Mgm1p and thereby link these two GTPases during mitochondrial fusion	Verified	chr4:1399698-1401206	1399698-1401206	99.2%	94.22	109.59	105.58	104.91	150.36	105.58	101.91	105.25	127.97	0.38	0.43	0.53	0.28	0.18	Matched[1442]
YDR471W	RPL27B	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl27Ap and has similarity to rat L27 ribosomal protein"	Verified	chr4:1401762-1402556	1401762-1401792,1402177-1402556	91.4%	4919.25	3585.63	4224.49	3117.13	524.40	181.01	4252.44	3670.81	352.71	15.70	14.90	1.46	-3.38	-4.50	Frag>80[1443,1444,1445]
YDR472W	TRS31	One of 10 subunits of the transport protein particle (TRAPP) complex of the cis-Golgi which mediates vesicle docking and fusion; involved in endoplasmic reticulum (ER) to Golgi membrane traffic	Verified	chr4:1403314-1404165	1403314-1404165	98.9%	150.64	155.39	153.02	139.97	65.24	54.56	153.02	146.49	59.90	0.56	0.59	0.25	-1.29	-0.77	Covered/w/another[1446]
YDR473C	PRP3	"Splicing factor, component of the U4/U6-U5 snRNP complex"	Verified	chr4:1404437-1405846	1404437-1405846	99.5%	93.36	102.62	89.08	81.96	124.00	83.38	97.99	85.52	103.69	0.36	0.35	0.43	0.28	0.23	Covered/w/another[1446]
YDR475C	JIP4	"Protein of unknown function; previously annotated as two separate ORFs, YDR474C and YDR475C, which were merged as a result of corrections to the systematic reference sequence"	Verified	chr4:1407456-1410086	1407456-1410086	99.0%	106.75	169.72	106.36	112.50	193.91	224.24	138.23	109.43	209.07	0.51	0.44	0.87	0.93	1.60	Matched[1448]
YDR476C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; YDR476C is not an essential gene	Uncharacterized	chr4:1410445-1411119	1410445-1411119	98.0%	214.61	201.01	229.72	173.80	323.43	179.85	207.81	201.76	251.64	0.77	0.82	1.04	0.32	0.47	Matched[1449]
YDR477W	SNF1	"AMP-activated serine/threonine protein kinase found in a complex containing Snf4p and members of the Sip1p/Sip2p/Gal83p family; required for transcription of glucose-repressed genes, thermotolerance, sporulation, and peroxisome biogenesis"	Verified	chr4:1412365-1414266	1412365-1414266	98.7%	249.72	256.11	326.40	276.35	271.55	207.13	252.92	301.37	239.34	0.93	1.22	0.99	-0.33	0.24	Matched[1451]
YDR478W	SNM1	"Subunit of RNase MRP, which cleaves pre-rRNA and has a role in cell cycle-regulated degradation of daughter cell-specific mRNAs; binds to the NME1 RNA subunit of RNase MRP"	Verified	chr4:1414567-1415163	1414567-1415163	98.6%	45.88	56.07	57.77	47.58	81.56	37.38	50.98	52.68	59.47	0.19	0.21	0.25	0.18	-0.27	Matched[1452]
YDR479C	PEX29	"Peroxisomal integral membrane peroxin, involved in the regulation of peroxisomal size, number and distribution; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p"	Verified	chr4:1415202-1416866	1415202-1416866	99.0%	144.94	154.64	143.12	132.20	232.87	183.15	149.79	137.66	208.01	0.55	0.56	0.86	0.60	0.92	Matched[1453]
YDR480W	DIG2	"Regulatory protein of unknown function, pheromone-inducible, involved in the regulation of mating-specific genes and the invasive growth pathway, required for MAP-kinase imposed repression, inhibits pheromone-responsive transcription"	Verified	chr4:1417391-1418362	1417391-1418362	98.6%	108.49	108.49	107.45	107.45	130.40	69.89	108.49	107.45	100.15	0.40	0.44	0.41	-0.10	0.05	Matched[1454]
YDR481C	PHO8	"Repressible alkaline phosphatase, a glycoprotein localized to the vacuole; regulated by levels of inorganic phosphate and by a system consisting of Pho4p, Pho9p, Pho80p, Pho81p and Pho85p; dephosphorylates phosphotyrosyl peptides"	Verified	chr4:1418542-1420242	1418542-1420242	98.9%	518.24	739.92	591.93	506.35	332.81	290.02	629.08	549.14	311.42	2.32	2.23	1.29	-0.82	-0.37	Covered/w/another[1455]
YDR482C	CWC21	"Component of a complex containing Cef1p, putatively involved in pre-mRNA splicing; may bind RNA; has similarity to S. pombe Cwf21p"	Verified	chr4:1420423-1420830	1420423-1420830	98.9%	183.34	138.74	173.43	151.13	178.38	111.49	161.04	162.28	144.94	0.59	0.66	0.60	-0.16	-0.10	Covered/w/another[1455]
YDR483W	KRE2	"Alpha1,2-mannosyltransferase of the Golgi involved in protein mannosylation"	Verified	chr4:1421149-1422477	1421149-1422477	98.7%	1028.17	1144.02	969.48	971.01	710.34	647.85	1086.09	970.24	679.09	4.01	3.94	2.81	-0.51	-0.14	Matched[1456]
YDR484W	VPS52	"Component of the GARP (Golgi-associated retrograde protein) complex, Vps51p-Vps52p-Vps53p-Vps54p, which is required for the recycling of proteins from endosomes to the late Golgi; involved in localization of actin and chitin"	Verified	chr4:1422755-1424680	1422755-1424680	99.1%	61.81	67.57	67.57	56.57	90.62	60.24	64.69	62.07	75.43	0.24	0.25	0.31	0.28	0.33	Covered/w/another[1457]
YDR485C	VPS72	"Htz1p-binding component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; required for vacuolar protein sorting"	Verified	chr4:1424812-1427199	1424812-1427199	99.2%	116.45	107.17	92.40	91.98	108.01	107.17	111.81	92.19	107.59	0.41	0.37	0.45	0.22	0.50	Covered/w/another[1457]
YDR486C	VPS60	Cytoplasmic and vacuolar membrane protein involved in late endosome to vacuole transport; required for normal filament maturation during pseudohyphal growth; may function in targeting specific cargo proteins for degradation	Verified	chr4:1427423-1428112	1427423-1428112	99.3%	271.53	277.37	236.50	240.88	383.94	208.76	274.45	238.69	296.35	1.01	0.97	1.23	0.31	0.31	Matched[1458]
YDR487C	RIB3	"3,4-dihydroxy-2-butanone-4-phosphate synthase (DHBP synthase), required for riboflavin biosynthesis from ribulose-5-phosphate, also has an unrelated function in mitochondrial respiration"	Verified	chr4:1428346-1428972	1428346-1428972	98.9%	926.06	1087.39	863.14	793.76	553.37	403.33	1006.72	828.45	478.35	3.72	3.36	1.98	-0.79	-0.58	Matched[1459]
YDR488C	PAC11	"Dynein intermediate chain, acts in the cytoplasmic dynein pathway, forms cortical cytoplasmic microtubule capture site with Num1p; null mutant is defective in nuclear migration, essential in the absence of CIN8"	Verified	chr4:1429180-1430781	1429180-1430781	98.9%	83.98	82.08	69.46	67.56	40.41	33.46	83.03	68.51	36.94	0.31	0.28	0.15	-0.89	0.12	Matched[1460]
YDR489W	SLD5	"Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p), which is localized to DNA replication origins and implicated in assembly of the DNA replication machinery"	Verified	chr4:1431004-1431888	1431004-1431888	98.8%	86.89	76.60	65.17	46.88	73.17	64.02	81.75	56.02	68.60	0.30	0.23	0.28	0.29	0.47	Matched[1461]
YDR490C	PKH1	"Serine/threonine protein kinase involved in sphingolipid-mediated signaling pathway that controls endocytosis; activates Ypk1p and Ykr2p, components of signaling cascade required for maintenance of cell wall integrity; redundant with Pkh2p"	Verified	chr4:1431960-1434260	1431960-1434260	98.9%	90.05	109.38	99.28	80.39	197.24	188.45	99.72	89.83	192.84	0.37	0.36	0.80	1.10	1.50	Matched[1462]
YDR492W	IZH1	"Membrane protein involved in zinc metabolism, member of the four-protein IZH family; transcription is regulated directly by Zap1p, expression induced by zinc deficiency and fatty acids; deletion increases sensitivity to elevated zinc"	Verified	chr4:1434916-1435866	1434916-1435866	99.1%	198.40	662.04	158.08	116.71	48.80	25.46	430.22	137.39	37.13	1.59	0.56	0.15	-1.89	-1.39	Matched[1463]
YDR491C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:1434492-1434983	1434492-1434983	98.8%	78.16	172.77	67.87	43.19	22.62	6.17	125.46	55.53	14.40	0.46	0.23	0.06	-1.95	0.13	Overlap[1463]
YDR493W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr4:1436209-1436580	1436209-1436580	98.3%	191.39	218.73	251.54	180.45	306.22	177.72	205.06	215.99	241.97	0.76	0.88	1.00	0.16	0.08	Matched[1464]
YDR494W	RSM28	Mitochondrial ribosomal protein of the small subunit; genetic interactions suggest a possible role in promoting translation initiation	Verified	chr4:1436922-1438007	1436922-1438007	98.7%	281.74	297.60	298.53	304.13	466.45	261.21	289.67	301.33	363.83	1.07	1.22	1.51	0.27	-0.14	Matched[1465]
YDR495C	VPS3	"Component of CORVET tethering complex; cytoplasmic protein required for the sorting and processing of soluble vacuolar proteins, acidification of the vacuolar lumen, and assembly of the vacuolar H+-ATPase"	Verified	chr4:1438107-1441142	1438107-1441142	99.4%	75.56	67.61	66.94	69.59	78.54	62.30	71.58	68.27	70.42	0.26	0.28	0.29	0.04	0.48	Matched[1466]
YDR496C	PUF6	"Pumilio-homology domain protein that binds ASH1 mRNA at PUF consensus sequences in the 3' UTR and represses its translation, resulting in proper asymmetric localization of ASH1 mRNA"	Verified	chr4:1441425-1443395	1441425-1443395	99.3%	423.43	201.75	244.15	178.26	19.41	3.06	312.59	211.20	11.24	1.15	0.86	0.05	-4.23	-5.22	Matched[1467]
YDR497C	ITR1	"Myo-inositol transporter with strong similarity to the minor myo-inositol transporter Itr2p, member of the sugar transporter superfamily; expression is repressed by inositol and choline via Opi1p and derepressed via Ino2p and Ino4p"	Verified	chr4:1443705-1445459	1443705-1445459	98.5%	966.20	922.25	990.48	1012.46	807.77	622.16	944.23	1001.47	714.96	3.49	4.07	2.96	-0.49	-0.54	Frag>80[1468,1469,1470]
YDR498C	SEC20	Membrane glycoprotein v-SNARE involved in retrograde transport from the Golgi to the ER; required for N- and O-glycosylation in the Golgi but not in the ER; forms a complex with the cytosolic Tip20p	Verified	chr4:1445835-1446986	1445835-1446986	98.9%	129.02	156.23	142.18	133.41	163.25	110.59	142.62	137.79	136.92	0.53	0.56	0.57	-0.01	0.19	Frag>80[1470,1471]
YDR499W	LCD1	Essential protein required for the DNA integrity checkpoint pathways; interacts physically with Mec1p; putative homolog of S. pombe Rad26 and human ATRIP	Verified	chr4:1447822-1450065	1447822-1450065	98.9%	86.55	94.66	60.40	59.05	59.95	53.19	90.60	59.73	56.57	0.33	0.24	0.23	-0.08	-0.42	Matched[1472]
YDR500C	RPL37B	"Protein component of the large (60S) ribosomal subunit, has similarity to Rpl37Ap and to rat L37 ribosomal protein"	Verified	chr4:1450190-1450845	1450190-1450449,1450839-1450845	77.1%	6873.10	6581.66	6125.08	5143.90	1544.63	1743.78	6727.38	5634.49	1644.20	24.83	22.87	6.81	-1.78	-2.33	Matched[1473]
YDR501W	PLM2	Protein required for partitioning of the 2-micron plasmid	Verified	chr4:1451345-1452910	1451345-1452910	98.8%	49.11	50.40	55.57	22.62	38.77	42.65	49.76	39.10	40.71	0.18	0.16	0.17	0.06	0.24	Matched[1474]
YDR502C	SAM2	"S-adenosylmethionine synthetase, catalyzes transfer of the adenosyl group of ATP to the sulfur atom of methionine; one of two differentially regulated isozymes (Sam1p and Sam2p)"	Verified	chr4:1453302-1454456	1453302-1454456	91.2%	272.39	294.22	296.12	209.75	170.84	146.16	283.31	252.94	158.50	1.05	1.03	0.66	-0.67	-0.18	Matched[1475]
YDR503C	LPP1	"Lipid phosphate phosphatase, catalyzes Mg(2+)-independent dephosphorylation of phosphatidic acid (PA), lysophosphatidic acid, and diacylglycerol pyrophosphate; involved in control of the cellular levels of phosphatidylinositol and PA"	Verified	chr4:1455034-1455858	1455034-1455858	99.1%	117.41	140.64	138.20	107.62	239.71	174.89	129.03	122.91	207.30	0.48	0.50	0.86	0.75	0.66	Covered/w/another[1476]
YDR504C	SPG3	Protein required for survival at high temperature during stationary phase; not required for growth on nonfermentable carbon sources	Verified	chr4:1456303-1456686	1456303-1456686	98.7%	282.20	311.21	319.12	263.74	548.57	279.56	296.70	291.43	414.07	1.10	1.18	1.72	0.51	0.47	Covered/w/another[1476]
YDR505C	PSP1	Asn and gln rich protein of unknown function; high-copy suppressor of POL1 (DNA polymerase alpha) and partial suppressor of CDC2 (polymerase delta) and CDC6 (pre-RC loading factor) mutations; overexpression results in growth inhibition	Verified	chr4:1456687-1459212	1456687-1459212	98.9%	156.06	176.87	165.26	182.07	319.72	317.72	166.46	173.67	318.72	0.61	0.70	1.32	0.88	0.93	
YDR506C		Possible membrane-localized protein	Uncharacterized	chr4:1459720-1461546	1459720-1461546	99.2%	33.67	50.79	41.40	41.40	73.97	82.25	42.23	41.40	78.11	0.16	0.17	0.32	0.92	1.54	Covered[1477]
YDR507C	GIN4	"Protein kinase involved in bud growth and assembly of the septin ring, proposed to have kinase-dependent and kinase-independent activities; undergoes autophosphorylation; similar to Kcc4p and Hsl1p"	Verified	chr4:1462350-1465778	1462350-1465778	99.2%	209.52	186.01	148.69	137.52	36.73	26.45	197.76	143.11	31.59	0.73	0.58	0.13	-2.18	-2.14	Matched[1478]
YDR509W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:1468218-1468565	1468218-1468565	99.1%	237.88	229.18	269.79	139.25	197.27	182.76	233.53	204.52	190.02	0.86	0.83	0.79	-0.11	-0.28	Covered/w/another[1480]
YDR508C	GNP1	"High-affinity glutamine permease, also transports Leu, Ser, Thr, Cys, Met and Asn; expression is fully dependent on Grr1p and modulated by the Ssy1p-Ptr3p-Ssy5p (SPS) sensor of extracellular amino acids"	Verified	chr4:1466445-1468436	1466445-1468436	97.6%	679.25	672.04	731.22	452.83	625.73	436.36	675.64	592.02	531.05	2.49	2.40	2.20	-0.16	0.23	Frag>80[1479,1480]
YDR510W	SMT3	"Ubiquitin-like protein of the SUMO family, conjugated to lysine residues of target proteins; regulates chromatid cohesion, chromosome segregation, APC-mediated proteolysis, DNA replication and septin ring dynamics"	Verified	chr4:1469392-1469697	1469392-1469697	98.4%	2238.58	2195.41	2065.87	2065.87	2145.59	1727.10	2216.99	2065.87	1936.34	8.18	8.39	8.02	-0.09	-0.38	Matched[1482]
YDR510C-A		"Dubious open reading frame unlikely to encode a functional protein; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr4:1469687-1469803	1469687-1469803	99.6%	1527.90	1665.24	1665.24	1553.65	1656.65	1124.46	1596.57	1609.44	1390.56	5.89	6.53	5.76	-0.21	NaN	Matched[1482]
YDR511W	ACN9	"Protein of the mitochondrial intermembrane space, required for acetate utilization and gluconeogenesis; has orthologs in higher eukaryotes"	Verified	chr4:1470009-1470410	1470009-1470410	98.7%	229.36	194.08	335.22	282.29	667.93	388.15	211.72	308.76	528.04	0.78	1.25	2.19	0.77	0.47	Matched[1483]
YDR513W	GRX2	"Cytoplasmic glutaredoxin, thioltransferase, glutathione-dependent disulfide oxidoreductase involved in maintaining redox state of target proteins, also exhibits glutathione peroxidase activity, expression induced in response to stress"	Verified	chr4:1471009-1471440	1471009-1471440	98.8%	1047.25	923.08	1265.13	1159.70	4957.44	2757.52	985.16	1212.42	3857.48	3.64	4.92	15.98	1.67	0.94	Matched[1484]
YDR512C	EMI1	"Non-essential protein of unknown function required for transcriptional induction of the early meiotic-specific transcription factor IME1, also required for sporulation"	Verified	chr4:1470492-1471055	1470492-1471055	99.4%	319.38	246.23	322.95	322.95	1207.94	610.21	282.80	322.95	909.08	1.04	1.31	3.77	1.49	1.09	Frag>80[1483,1484]
YDR514C		Putative protein of unknown function	Uncharacterized	chr4:1471540-1472991	1471540-1472991	99.4%	96.31	71.37	59.59	51.97	20.09	9.01	83.84	55.78	14.55	0.31	0.23	0.06	-1.94	-1.09	Matched[1485]
YDR515W	SLF1	RNA binding protein that associates with polysomes; proposed to be involved in regulating mRNA translation; involved in the copper-dependent mineralization of copper sulfide complexes on cell surface in cells cultured in copper salts	Verified	chr4:1473421-1474764	1473421-1474764	98.9%	91.04	72.23	91.04	93.29	93.29	72.98	81.63	92.17	83.14	0.30	0.37	0.34	-0.15	-0.01	Matched[1486]
YDR516C	EMI2	Non-essential protein of unknown function required for transcriptional induction of the early meiotic-specific transcription factor IME1; required for sporulation; expression is regulated by glucose-repression transcription factors Mig1/2p	Verified	chr4:1474966-1476468	1474966-1476468	99.1%	342.52	728.70	831.45	1031.59	1646.12	1587.69	535.61	931.52	1616.90	1.98	3.78	6.70	0.80	1.25	Frag>80[1487,1488,1489]
YDR517W	GRH1	"Acetylated, cis-golgi localized protein involved in ER to Golgi transport; homolog of human GRASP65; forms a complex with the coiled-coil protein Bug1p; mutants are compromised for the fusion of ER-derived vesicles with Golgi membranes"	Verified	chr4:1477231-1478349	1477231-1478349	98.5%	371.83	427.15	428.05	369.11	559.55	369.11	399.49	398.58	464.33	1.47	1.62	1.92	0.22	0.36	Matched[1490]
YDR518W	EUG1	"Protein disulfide isomerase of the endoplasmic reticulum lumen, function overlaps with that of Pdi1p; may interact with nascent polypeptides in the ER"	Verified	chr4:1478600-1480153	1478600-1480153	99.0%	252.18	334.72	277.53	284.03	246.33	226.83	293.45	280.78	236.58	1.08	1.14	0.98	-0.25	0.54	Matched[1491]
YDR519W	FPR2	"Membrane-bound peptidyl-prolyl cis-trans isomerase (PPIase), binds to the drugs FK506 and rapamycin; expression pattern suggests possible involvement in ER protein trafficking"	Verified	chr4:1480417-1480824	1480417-1480824	98.4%	687.49	600.31	754.75	660.09	789.62	440.89	643.90	707.42	615.26	2.38	2.87	2.55	-0.20	-1.06	Matched[1492]
YDR521W		Dubious ORF that overlaps YDR520C; mutant increases expression of PIS1 and RPL3 in glycerol	Dubious	chr4:1483133-1483468	1483133-1483468	99.1%	15.01	21.02	21.02	9.01	21.02	18.01	18.01	15.01	19.51	0.07	0.06	0.08	0.38	-0.06	Covered/w/another[1493]
YDR520C		Putative transcription factor; contains the (Zn(II)2Cys6 motif; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; null mutant is viable and sensitive to caffeine	Uncharacterized	chr4:1481077-1483395	1481077-1483395	99.2%	61.28	52.15	48.24	37.37	43.89	26.94	56.71	42.81	35.42	0.21	0.17	0.15	-0.27	-0.34	Matched[1493]
YDR522C	SPS2	"Protein expressed during sporulation, redundant with Sps22p for organization of the beta-glucan layer of the spore wall; S. pombe ortholog is a spore wall component"	Verified	chr4:1483787-1485295	1483787-1485295	99.4%	18.00	12.00	15.33	12.00	14.00	9.33	15.00	13.66	11.66	0.06	0.06	0.05	-0.23	0.34	
YDR523C	SPS1	"Putative protein serine/threonine kinase expressed at the end of meiosis and localized to the prospore membrane, required for correct localization of enzymes involved in spore wall synthesis"	Verified	chr4:1485558-1487030	1485558-1487030	99.2%	11.63	11.63	6.84	5.47	5.47	4.10	11.63	6.16	4.79	0.04	0.02	0.02	-0.36	-0.29	
YDR524C	AGE1	"ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector, involved in the secretory and endocytic pathways; contains C2C2H2 cysteine/histidine motif"	Verified	chr4:1487534-1488982	1487534-1488982	99.1%	179.74	189.49	153.96	119.83	89.17	45.98	184.62	136.89	67.58	0.68	0.56	0.28	-1.02	-1.72	Matched[1494]
YDR524W-C		Putative protein of unknown function; small ORF identified by SAGE; deletion strains are moderately sensitive to the radiomimetic drug bleomycin	Uncharacterized	chr4:1489395-1489484	1489395-1489484	99.3%	35104.48	33324.63	30067.16	28399.25	12011.19	6783.58	34214.55	29233.21	9397.39	126.30	118.66	38.94	-1.64	NaN	Matched[1495]
YDR524C-B		Putative protein of unknown function	Uncharacterized	chr4:1489590-1489790	1489590-1489790	97.5%	25678.22	23413.39	23648.03	21107.76	9865.25	5912.01	24545.80	22377.90	7888.63	90.61	90.84	32.69	-1.50	NaN	Matched[1495]
YDR525W	API2	"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; 26% of ORF overlaps the dubious ORF YDR524C-A; insertion mutation in a cdc34-2 mutant background causes altered bud morphology"	Dubious	chr4:1489897-1490226	1489897-1490226	98.3%	9.25	12.33	0.00	9.25	0.00	3.08	10.79	4.63	1.54	0.04	0.02	0.01	-1.58	-0.50	Frag<80[1495,1496]
YDR524C-A		"Dubious open reading frame unlikely to encode a functional protein; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr4:1489863-1489982	1489863-1489982	98.0%	8.50	8.50	17.01	17.01	0.00	8.50	8.50	17.01	4.25	0.03	0.07	0.02	-2.00	NaN	Matched[1495]
YDR525W-A	SNA2	"Protein of unknown function, has similarity to Pmp3p, which is involved in cation transport; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern"	Verified	chr4:1490588-1490827	1490588-1490827	99.1%	634.90	639.10	622.28	626.49	769.45	529.78	637.00	624.39	649.61	2.35	2.53	2.69	0.06	-0.23	Matched[1496]
YDR527W	RBA50	"Protein involved in transcription; interacts with RNA polymerase II subunits Rpb2p, Rpb3, and Rpb11p; has similarity to human RPAP1"	Verified	chr4:1491086-1492405	1491086-1492405	98.5%	197.62	196.85	172.25	119.19	83.05	53.83	197.24	145.72	68.44	0.73	0.59	0.28	-1.09	-1.01	Matched[1497]
YDR526C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:1491067-1491537	1491067-1491537	98.2%	151.31	129.69	136.18	88.62	47.55	38.91	140.50	112.40	43.23	0.52	0.46	0.18	-1.38	-0.46	Covered/w/another[1497]
YDR528W	HLR1	"Protein involved in regulation of cell wall composition and integrity and response to osmotic stress; overproduction suppresses a lysis sensitive PKC mutation; similar to Lre1p, which functions antagonistically to protein kinase A"	Verified	chr4:1494578-1495849	1494578-1495849	99.0%	233.54	235.92	195.41	150.93	99.30	54.02	234.73	173.17	76.66	0.87	0.70	0.32	-1.18	-0.53	Matched[1499]
YDR529C	QCR7	"Subunit 7 of the ubiquinol cytochrome-c reductase complex, which is a component of the mitochondrial inner membrane electron transport chain; oriented facing the mitochondrial matrix; N-terminus appears to play a role in complex assembly"	Verified	chr4:1496157-1496540	1496157-1496540	98.9%	1021.28	1184.47	1197.63	1360.82	3205.97	2318.93	1102.87	1279.23	2762.45	4.07	5.19	11.45	1.11	-0.44	Matched[1500]
YDR530C	APA2	"Diadenosine 5',5''-P1,P4-tetraphosphate phosphorylase II (AP4A phosphorylase), involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; has similarity to Apa1p"	Verified	chr4:1496783-1497760	1496783-1497760	98.9%	204.76	267.84	221.30	204.76	221.30	138.57	236.30	213.03	179.94	0.87	0.86	0.75	-0.24	-0.20	Frag>80[1501,1502]
YDR531W		"Pantothenate kinase (ATP:D-pantothenate 4'-phosphotransferase, EC 2.7.1.33); catalyzes the first committed step in the universal biosynthetic pathway leading to coenzyme A1"	Uncharacterized	chr4:1498224-1499327	1498224-1499327	99.0%	265.47	320.39	246.24	202.30	199.56	135.48	292.93	224.27	167.52	1.08	0.91	0.69	-0.42	-0.15	Matched[1503]
YDR532C		Protein of unknown function that localizes to the nuclear side of the spindle pole body and along short spindles; deletion mutants have short telomeres; forms a complex with Spc105p	Uncharacterized	chr4:1499388-1500545	1499388-1500545	99.6%	88.41	104.01	84.08	77.14	168.15	130.88	96.21	80.61	149.52	0.36	0.33	0.62	0.89	0.29	Covered[1504]
YDR533C	HSP31	"Possible chaperone and cysteine protease with similarity to E. coli Hsp31; member of the DJ-1/ThiJ/PfpI superfamily, which includes human DJ-1 involved in Parkinson's disease; exists as a dimer and contains a putative metal-binding site"	Verified	chr4:1501439-1502152	1501439-1502152	99.0%	182.46	154.17	192.36	144.27	1915.13	1451.20	168.32	168.32	1683.17	0.62	0.68	6.97	3.32	3.09	Matched[1505]
YDR534C	FIT1	"Mannoprotein that is incorporated into the cell wall via a glycosylphosphatidylinositol (GPI) anchor, involved in the retention of siderophore-iron in the cell wall"	Verified	chr4:1503305-1504891	1503305-1504891	72.5%	13.90	18.24	15.64	15.64	9.56	6.08	16.07	15.64	7.82	0.06	0.06	0.03	-1.00	0.10	
YDR535C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; YDR535C is not an essential gene."	Dubious	chr4:1506597-1507353	1506597-1507049,1507306-1507353	98.7%	2.02	16.17	2.02	2.02	8.09	2.02	9.10	2.02	5.05	0.03	0.01	0.02	1.32	0.63	
YDR536W	STL1	"Glycerol proton symporter of the plasma membrane, subject to glucose-induced inactivation, strongly but transiently induced when cells are subjected to osmotic shock"	Verified	chr4:1507996-1509705	1507996-1509705	98.8%	17.16	18.35	15.39	5.92	27.22	17.75	17.75	10.65	22.49	0.07	0.04	0.09	1.08	1.33	Frag<80[1506]
YDR538W	PAD1	"Phenylacrylic acid decarboxylase, confers resistance to cinnamic acid, decarboxylates aromatic carboxylic acids to the corresponding vinyl derivatives; homolog of E. coli UbiX"	Verified	chr4:1510892-1511620	1510892-1511620	98.8%	168.00	151.34	168.00	144.39	131.90	77.75	159.67	156.20	104.82	0.59	0.63	0.43	-0.58	-0.19	Matched[1508]
YDR537C		"Dubious open reading frame unlikely to encode a protein, almost completely overlaps verified ORF PAD1/YDR538W"	Dubious	chr4:1510846-1511451	1510846-1511451	98.8%	141.94	145.28	153.63	128.58	125.24	65.13	143.61	141.11	95.19	0.53	0.57	0.39	-0.57	-0.01	Matched[1508]
YDR539W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YDR539W is not an essential gene; homolog of E. coli UbiD	Uncharacterized	chr4:1512084-1513595	1512084-1513595	98.7%	184.97	203.73	184.30	188.99	142.75	145.43	194.35	186.64	144.09	0.72	0.76	0.60	-0.37	0.03	Matched[1509]
YDR540C		Hypothetical protein; null mutant displays increased levels of spontaneous Rad52 foci	Uncharacterized	chr4:1517120-1517659	1517120-1517659	99.3%	59.65	39.15	61.51	44.74	274.02	147.26	49.40	53.13	210.64	0.18	0.22	0.87	1.99	1.95	Covered/w/another[1512]
YDR541C		Putative dihydrokaempferol 4-reductase	Uncharacterized	chr4:1519648-1520682	1519648-1520682	98.9%	128.02	151.48	103.59	111.41	148.55	90.89	139.75	107.50	119.72	0.52	0.44	0.50	0.16	0.36	Covered/w/another[1512]
YDR542W		Hypothetical protein	Uncharacterized	chr4:1523234-1523596	1523234-1523596	0.7%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.28	
YDR543C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:1524619-1524918	1524619-1524918	5.2%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	-0.32	
YDR544C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr4:1525080-1525508	1525080-1525508	47.7%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	1.15	
YDR545W	YRF1-1	"Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p"	Verified	chr4:1526306-1531696	1526306-1531696	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.31	
YDR545C-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr4:1530848-1531327	1530848-1531327	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YEL077W-A		"Dubious open reading frame, unlike to encode a functional protein; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr5:630-1112	630-1112	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YEL077C		Helicase-like protein encoded within the telomeric Y' element	Uncharacterized	chr5:264-4097	264-4097	2.9%	98.36	80.48	62.59	17.88	35.77	26.83	89.42	40.24	31.30	0.33	0.16	0.13	-0.36	-0.15	Frag<80[1514]
YEL075W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr5:4870-5481	4870-5481	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.25	
YEL076C		Putative protein of unknown function	Uncharacterized	chr5:4464-5114	4464-5114	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.47	
YEL076C-A		Putative protein of unknown function	Uncharacterized	chr5:4185-5114	4185-4322,4602-5114	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.40	
YEL075C		Putative protein of unknown function	Uncharacterized	chr5:5345-5713	5345-5713	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.18	
YEL074W		Hypothetical protein	Dubious	chr5:6126-6464	6126-6464	42.7%	34.55	20.73	13.82	41.46	6.91	0.00	27.64	27.64	3.46	0.10	0.11	0.01	-3.00	-0.62	Frag<80[1515]
YEL073C		Putative protein of unknown function; located adjacent to ARS503 and the telomere on the left arm of chromosome V; regulated by inositol/choline	Uncharacterized	chr5:7230-7553	7230-7553	68.5%	27.03	36.04	49.56	22.53	225.27	184.72	31.54	36.04	204.99	0.12	0.15	0.85	2.51	0.95	Matched[1516]
YEL072W	RMD6	Protein required for sporulation	Verified	chr5:13720-14415	13720-14415	99.0%	65.33	81.30	74.04	49.36	126.30	50.81	73.31	61.70	88.56	0.27	0.25	0.37	0.52	0.59	Matched[1520]
YEL071W	DLD3	"D-lactate dehydrogenase, part of the retrograde regulon which consists of genes whose expression is stimulated by damage to mitochondria and reduced in cells grown with glutamate as the sole nitrogen source, located in the cytoplasm"	Verified	chr5:16355-17845	16355-17845	98.7%	739.49	1405.57	833.28	657.25	799.30	602.87	1072.53	745.26	701.08	3.96	3.03	2.90	-0.09	0.37	Matched[1522]
YEL070W	DSF1	Deletion suppressor of mpt5 mutation	Uncharacterized	chr5:19589-21097	19589-21097	7.0%	9.48	0.00	9.48	0.00	9.48	28.45	4.74	4.74	18.96	0.02	0.02	0.08	2.00	0.66	
YEL069C	HXT13	"Hexose transporter, induced in the presence of non-fermentable carbon sources, induced by low levels of glucose, repressed by high levels of glucose"	Verified	chr5:21537-23231	21537-23231	19.3%	27.48	12.21	12.21	3.05	18.32	24.43	19.85	7.63	21.37	0.07	0.03	0.09	1.49	0.93	Frag<80[1523]
YEL068C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr5:25646-25978	25646-25978	99.0%	227.39	245.58	215.26	145.53	236.48	166.75	236.48	180.39	201.62	0.87	0.73	0.84	0.16	0.31	Matched[1525]
YEL066W	HPA3	"D-Amino acid N-acetyltransferase, catalyzes N-acetylation of D-amino acids through ordered bi-bi mechanism in which acetyl-CoA is first substrate bound and CoA is last product liberated; similar to Hpa2p, acetylates histones weakly in vitro"	Verified	chr5:26667-27206	26667-27206	98.2%	148.95	126.33	113.13	126.33	186.66	131.98	137.64	119.73	159.32	0.51	0.49	0.66	0.41	0.42	Matched[1527]
YEL067C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr5:26189-26776	26189-26776	98.4%	43.19	50.10	50.10	50.10	46.64	46.64	46.64	50.10	46.64	0.17	0.20	0.19	-0.10	-0.41	Matched[1526]
YEL065W	SIT1	"Ferrioxamine B transporter, member of the ARN family of transporters that specifically recognize siderophore-iron chelates; transcription is induced during iron deprivation and diauxic shift; potentially phosphorylated by Cdc28p"	Verified	chr5:27657-29543	27657-29543	98.9%	346.06	87.85	253.92	136.07	78.21	53.57	216.95	194.99	65.89	0.80	0.79	0.27	-1.57	-0.67	Matched[1528]
YEL064C	AVT2	"Putative transporter, member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters"	Verified	chr5:29797-31239	29797-31239	99.1%	67.85	81.84	62.25	71.35	67.15	38.47	74.84	66.80	52.81	0.28	0.27	0.22	-0.34	-0.28	Matched[1529]
YEL063C	CAN1	"Plasma membrane arginine permease, requires phosphatidyl ethanolamine (PE) for localization, exclusively associated with lipid rafts; mutation confers canavanine resistance"	Verified	chr5:31694-33466	31694-33466	98.8%	242.69	300.94	247.83	204.43	121.06	93.08	271.81	226.13	107.07	1.00	0.92	0.44	-1.08	1.19	Covered/w/another[1530]
YEL062W	NPR2	Protein with a possible role in regulating expression of nitrogen permeases; transcription is induced in response to proline and urea; contains two PEST sequences; null mutant is resistant to cisplatin and doxorubicin	Verified	chr5:34407-36254	34407-36254	99.1%	57.34	67.17	63.35	52.43	112.50	108.13	62.26	57.89	110.32	0.23	0.23	0.46	0.93	0.70	Covered/w/another[1530]
YEL061C	CIN8	Kinesin motor protein involved in mitotic spindle assembly and chromosome segregation	Verified	chr5:36535-39537	36535-39537	99.4%	134.36	132.02	115.27	100.52	78.41	71.04	133.19	107.89	74.72	0.49	0.44	0.31	-0.53	-0.24	Covered/w/another[1530]
YEL060C	PRB1	"Vacuolar proteinase B (yscB), a serine protease of the subtilisin family; involved in protein degradation in the vacuole and required for full protein degradation during sporulation"	Verified	chr5:40046-41953	40046-41953	98.6%	384.22	627.08	596.25	577.12	1724.99	2157.03	505.65	586.69	1941.01	1.87	2.38	8.04	1.73	2.27	Frag>80[1531,1532]
YEL059C-A	SOM1	"Subunit of the mitochondrial inner membrane peptidase, which is required for maturation of mitochondrial proteins of the intermembrane space; Som1p facilitates cleavage of a subset of substrates"	Verified	chr5:42400-42624	42400-42624	98.1%	163.08	135.90	126.84	154.02	140.43	126.84	149.49	140.43	133.64	0.55	0.57	0.55	-0.07	0.05	Matched[1533]
YEL059W		Dubious open reading frame unlikely to encode a functional protein	Dubious	chr5:42652-42960	42652-42960	99.0%	42.48	32.68	39.21	26.14	32.68	16.34	37.58	32.68	24.51	0.14	0.13	0.10	-0.42	1.77	Frag>80[1533,1534]
YEL058W	PCM1	"Essential N-acetylglucosamine-phosphate mutase; converts GlcNAc-6-P to GlcNAc-1-P, which is a precursor for the biosynthesis of chitin and for the formation of N-glycosylated mannoproteins and glycosylphosphatidylinositol anchors"	Verified	chr5:43252-44925	43252-44925	98.6%	434.53	329.69	377.57	360.60	263.02	260.60	382.11	369.08	261.81	1.41	1.50	1.08	-0.50	0.00	Matched[1535]
YEL057C		Protein of unknown function involved in telomere maintenance; target of UME6 regulation	Uncharacterized	chr5:45020-45721	45020-45721	99.2%	5.75	7.18	14.36	11.49	57.45	22.98	6.46	12.93	40.22	0.02	0.05	0.17	1.64	1.84	Matched[1536]
YEL056W	HAT2	"Subunit of the Hat1p-Hat2p histone acetyltransferase complex; required for high affinity binding of the complex to free histone H4, thereby enhancing Hat1p activity; similar to human RbAp46 and 48; has a role in telomeric silencing"	Verified	chr5:47168-48373	47168-48373	98.7%	172.15	183.91	179.71	172.99	205.75	145.28	178.03	176.35	175.51	0.66	0.72	0.73	-0.01	0.13	Matched[1537]
YEL055C	POL5	"DNA Polymerase phi; has sequence similarity to the human MybBP1A and weak sequence similarity to B-type DNA polymerases, not required for chromosomal DNA replication; required for the synthesis of rRNA"	Verified	chr5:48471-51539	48471-51539	99.2%	214.87	150.80	153.76	121.24	42.71	31.87	182.84	137.50	37.29	0.67	0.56	0.15	-1.88	-1.66	Frag>80[1538]
YEL053W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YEL054C"	Dubious	chr5:52908-53255	52908-53255	86.1%	5640.18	4184.22	4945.60	3830.25	634.48	360.65	4912.20	4387.92	497.57	18.13	17.81	2.06	-3.14	NaN	Matched[1540]
YEL054C	RPL12A	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl12Bp; rpl12a rpl12b double mutant exhibits slow growth and slow translation; has similarity to E. coli L11 and rat L12 ribosomal proteins"	Verified	chr5:52721-53218	52721-53218	77.3%	6302.53	4596.41	5227.44	4027.70	734.91	360.96	5449.47	4627.57	547.93	20.12	18.78	2.27	-3.08	-3.61	Matched[1540]
YEL053C	MAK10	"Non-catalytic subunit of N-terminal acetyltransferase of the NatC type, required for replication of dsRNA virus; expression is glucose-repressible"	Verified	chr5:53901-56102	53901-56102	99.2%	156.98	135.01	107.09	93.36	31.12	20.14	145.99	100.23	25.63	0.54	0.41	0.11	-1.97	-1.44	Matched[1541]
YEL052W	AFG1	Conserved protein that may act as a chaperone in the degradation of misfolded or unassembled cytochrome c oxidase subunits; localized to matrix face of the mitochondrial inner membrane; member of the AAA family but lacks a protease domain	Verified	chr5:56571-58100	56571-58100	98.7%	246.99	262.22	241.70	277.45	232.42	203.95	254.61	259.57	218.19	0.94	1.05	0.90	-0.25	0.10	Matched[1542]
YEL051W	VMA8	"Subunit D of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; plays a role in the coupling of proton transport and ATP hydrolysis"	Verified	chr5:58378-59148	58378-59148	98.4%	1527.09	1926.32	1592.97	1574.53	1328.14	1150.26	1726.71	1583.75	1239.20	6.37	6.43	5.13	-0.35	-0.73	Matched[1543]
YEL050W-A		"Dubious open reading frame unlikely to encode a functional protein, identified by fungal homology and RT-PCR"	Dubious	chr5:59549-59740	59549-59740	99.5%	277.43	324.54	324.54	293.13	450.16	198.91	300.98	308.83	324.54	1.11	1.25	1.34	0.07	NaN	Covered/w/another[1545]
YEL050C	RML2	"Mitochondrial ribosomal protein of the large subunit, has similarity to E. coli L2 ribosomal protein; fat21 mutant allele causes inability to utilize oleate and may interfere with activity of the Adr1p transcription factor"	Verified	chr5:59670-60851	59670-60851	98.9%	259.92	302.67	264.20	273.60	348.84	257.36	281.30	268.90	303.10	1.04	1.09	1.26	0.17	0.11	Matched[1545]
YEL049W	PAU2	"Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme"	Verified	chr5:63728-64090	63728-64090	24.9%	11.05	11.05	22.11	0.00	22.11	0.00	11.05	11.05	11.05	0.04	0.04	0.05	0.00	0.89	
YEL048C		Putative protein of unknown function; synthetic lethal with gcs1delta	Uncharacterized	chr5:64709-65167	64709-65167	99.4%	94.25	87.67	74.52	56.99	15.34	24.11	90.96	65.75	19.73	0.34	0.27	0.08	-1.74	-2.00	Matched[1547]
YEL047C		"Soluble fumarate reductase, required with isoenzyme Osm1p for anaerobic growth; may interact with ribosomes, based on co-purification experiments; authentic, non-tagged protein is detected in purified mitochondria in high-throughput studies"	Verified	chr5:65385-66797	65385-66797	98.8%	417.41	860.59	439.61	388.77	479.70	424.57	639.00	414.19	452.13	2.36	1.68	1.87	0.13	0.67	Frag>80[1548,1549,1550]
YEL046C	GLY1	"Threonine aldolase, catalyzes the cleavage of L-allo-threonine and L-threonine to glycine; involved in glycine biosynthesis"	Verified	chr5:67629-68792	67629-68792	98.5%	727.99	877.94	560.59	447.25	176.11	143.85	802.96	503.92	159.98	2.96	2.05	0.66	-1.66	-0.99	Matched[1551]
YEL045C		"Dubious open reading frame unlikely to encode a protein based on available experimental and comparative sequence data; deletion gives MMS sensitivity, growth defect under alkaline conditions, less than optimal growth upon citric acid stress"	Dubious	chr5:68840-69265	68840-69265	97.6%	69.74	67.33	48.10	38.48	16.83	12.02	68.54	43.29	14.43	0.25	0.18	0.06	-1.58	-0.27	Overlap[1551,1552]
YEL044W	IES6	Protein that associates with the INO80 chromatin remodeling complex under low-salt conditions	Verified	chr5:69757-70257	69757-70257	98.1%	282.71	276.61	246.10	195.25	252.20	115.93	279.66	220.68	184.07	1.03	0.90	0.76	-0.26	-0.64	Covered/w/another[1552]
YEL043W		"Predicted cytoskeleton protein involved in intracellular signalling based on quantitative analysis of protein-protein interaction maps; may interact with ribosomes, based on co-purification studies; contains fibronectin type III domain fold"	Verified	chr5:70478-73348	70478-73348	99.0%	147.45	169.97	140.76	124.93	73.55	133.02	158.71	132.84	103.28	0.59	0.54	0.43	-0.36	0.72	Covered/w/another[1552]
YEL042W	GDA1	"Guanosine diphosphatase located in the Golgi, involved in the transport of GDP-mannose into the Golgi lumen by converting GDP to GMP after mannose is transferred its substrate"	Verified	chr5:73771-75327	73771-75327	98.8%	385.30	320.98	422.34	389.85	142.30	93.56	353.14	406.10	117.93	1.30	1.65	0.49	-1.78	-1.30	Covered/w/another[1552]
YEL041W	YEF1	ATP-NADH kinase; phosophorylates both NAD and NADH; homooctameric structure consisting of 60-kDa subunits; sequence similarity to Utr1p and Pos5p; overexpression complements certain pos5 phenotypes	Verified	chr5:75944-77431	75944-77431	98.7%	31.32	37.45	39.49	26.56	122.57	82.39	34.39	33.03	102.48	0.13	0.13	0.42	1.63	2.27	Covered/w/another[1552]
YEL040W	UTR2	Cell wall protein that functions in the transfer of chitin to beta(1-6)glucan; putative chitin transglycosidase; glycosylphosphatidylinositol (GPI)-anchored protein localized to the bud neck; has a role in cell wall maintenance	Verified	chr5:78053-79456	78053-79456	98.0%	1495.68	1160.48	1142.30	1015.78	173.05	124.34	1328.08	1079.04	148.70	4.90	4.38	0.62	-2.86	-1.30	Frag>80[1553]
YEL039C	CYC7	"Cytochrome c isoform 2, expressed under hypoxic conditions; electron carrier of the mitochondrial intermembrane space that transfers electrons from ubiquinone-cytochrome c oxidoreductase to cytochrome c oxidase during cellular respiration"	Verified	chr5:79636-79977	79636-79977	93.5%	134.43	296.99	347.01	343.88	7768.66	4776.87	215.71	345.45	6272.76	0.80	1.40	25.99	4.18	2.47	Covered/w/another[1553]
YEL038W	UTR4	"Protein of unknown function with sequence similarity to 2,3-diketo-5-methylthiopentyl-1-phosphate enolase-phosphatases, found in both the cytoplasm and nucleus"	Verified	chr5:80462-81145	80462-81145	98.4%	353.68	352.20	371.52	304.64	573.62	371.52	352.94	338.08	472.57	1.30	1.37	1.96	0.48	0.52	Frag>80[1554,1555]
YEL037C	RAD23	"Protein with ubiquitin-like N terminus, recognizes and binds damaged DNA (with Rad4p) during nucleotide excision repair; regulates Rad4p levels, subunit of Nuclear Excision Repair Factor 2 (NEF2); homolog of human HR23A and HR23B proteins"	Verified	chr5:81407-82603	81407-82603	98.8%	495.46	367.79	523.36	494.61	476.01	344.96	431.62	508.98	410.48	1.59	2.07	1.70	-0.31	-0.01	Matched[1556]
YEL036C	ANP1	"Subunit of the alpha-1,6 mannosyltransferase complex; type II membrane protein; has a role in retention of glycosyltransferases in the Golgi; involved in osmotic sensitivity and resistance to aminonitrophenyl propanediol"	Verified	chr5:83050-84552	83050-84552	96.3%	330.12	296.97	337.72	281.09	133.98	125.00	313.54	309.40	129.49	1.16	1.26	0.54	-1.26	-0.54	Matched[1557]
YEL035C	UTR5	Protein of unknown function; transcription may be regulated by Gcr1p	Uncharacterized	chr5:85045-85545	85045-85545	98.4%	4.06	6.09	2.03	2.03	16.23	10.14	5.07	2.03	13.18	0.02	0.01	0.05	2.70	0.56	Overlap[1558]
YEL034W	HYP2	"Translation initiation factor eIF-5A, promotes formation of the first peptide bond; similar to and functionally redundant with Anb1p; possible role in translation elongation; undergoes an essential hypusination modification"	Verified	chr5:85676-86149	85676-86149	78.4%	8440.36	6578.48	8698.65	7617.04	10191.93	6075.34	7509.42	8157.85	8133.63	27.72	33.11	33.70	-0.00	-1.32	Matched[1558]
YEL033W		"Predicted to have metabolic role based on analysis of gene networks derived from chromatin immunoprecipitation experiments, experiments on gene deletion mutants, and localization of transcription factor binding sites"	Dubious	chr5:86179-86598	86179-86598	97.7%	2829.69	2371.48	2944.25	2710.27	3448.77	1857.22	2600.59	2827.26	2652.99	9.60	11.48	10.99	-0.09	0.18	Frag<80[1558]
YEL034C-A		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data; completely overlaps HYP2/YEL034W, a verified gene that encodes eiF-5A"	Dubious	chr5:85613-86215	85613-86215	82.8%	8328.41	6642.30	8684.86	7685.61	10162.70	6051.56	7485.36	8185.23	8107.13	27.63	33.23	33.59	-0.01	NaN	Matched[1558]
YEL032W	MCM3	Protein involved in DNA replication; component of the Mcm2-7 hexameric complex that binds chromatin as a part of the pre-replicative complex	Verified	chr5:86937-89852	86937-89852	98.6%	156.52	158.61	153.74	117.22	52.52	52.17	157.57	135.48	52.35	0.58	0.55	0.22	-1.37	-0.69	Matched[1559]
YEL032C-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr5:87040-87201	87040-87201	98.2%	113.18	100.60	62.88	25.15	25.15	44.01	106.89	44.01	34.58	0.39	0.18	0.14	-0.35	NaN	Covered/w/another[1559]
YEL031W	SPF1	"P-type ATPase, ion transporter of the ER membrane involved in ER function and Ca2+ homeostasis; required for regulating Hmg2p degradation; confers sensitivity to a killer toxin (SMKT) produced by Pichia farinosa KK1"	Verified	chr5:90258-93905	90258-93905	99.0%	489.17	405.80	420.76	383.64	209.69	208.30	447.49	402.20	208.99	1.65	1.63	0.87	-0.94	-0.40	Matched[1560]
YEL030W	ECM10	"Heat shock protein of the Hsp70 family, localized in mitochondrial nucleoids, plays a role in protein translocation, interacts with Mge1p in an ATP-dependent manner; overexpression induces extensive mitochondrial DNA aggregations"	Verified	chr5:94644-96578	94644-96578	98.1%	31.60	56.35	29.49	29.49	46.87	30.54	43.97	29.49	38.71	0.16	0.12	0.16	0.39	0.91	Covered/w/another[1561]
YEL030C-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr5:94583-94897	94583-94897	99.0%	22.45	48.10	19.24	19.24	16.03	19.24	35.28	19.24	17.64	0.13	0.08	0.07	-0.13	NaN	Covered/w/another[1561]
YEL029C	BUD16	Protein involved in bud-site selection and telomere maintenance; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern; has similarity to pyridoxal kinases	Verified	chr5:96858-97796	96858-97796	99.1%	132.17	161.18	107.45	99.93	55.88	34.39	146.68	103.69	45.13	0.54	0.42	0.19	-1.20	-0.83	Covered/w/another[1561]
YEL028W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr5:98668-99129	98668-99129	99.0%	74.34	61.22	19.68	8.75	13.12	15.31	67.78	14.21	14.21	0.25	0.06	0.06	0.00	-0.75	Overlap[1561]
YEL027W	CUP5	Proteolipid subunit of the vacuolar H(+)-ATPase V0 sector (subunit c; dicyclohexylcarbodiimide binding subunit); required for vacuolar acidification and important for copper and iron metal ion homeostasis	Verified	chr5:100769-101251	100769-101251	99.1%	5273.90	5971.79	4835.10	5090.02	3807.07	2647.40	5622.85	4962.56	3227.23	20.76	20.14	13.37	-0.62	-0.93	Matched[1562]
YEL026W	SNU13	"RNA binding protein, part of U3 snoRNP involved in rRNA processing, part of U4/U6-U5 tri-snRNP involved in mRNA splicing, similar to human 15.5K protein"	Verified	chr5:101943-102323	101943-102323	99.1%	2074.40	1261.07	1494.20	1356.44	190.75	79.48	1667.73	1425.32	135.11	6.16	5.79	0.56	-3.40	-2.26	Matched[1563]
YEL025C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus	Uncharacterized	chr5:102581-106147	102581-106147	99.1%	82.03	100.98	78.35	74.11	83.72	87.40	91.50	76.23	85.56	0.34	0.31	0.35	0.17	0.32	Matched[1564]
YEL024W	RIP1	"Ubiquinol-cytochrome-c reductase, a Rieske iron-sulfur protein of the mitochondrial cytochrome bc1 complex; transfers electrons from ubiquinol to cytochrome c1 during respiration"	Verified	chr5:107260-107907	107260-107907	98.8%	268.56	398.15	424.70	484.03	716.67	521.50	333.36	454.36	619.09	1.23	1.84	2.57	0.45	0.41	Matched[1566]
YEL023C		Putative protein of unknown function; expression is increased greatly during sporulation; YEL023C is not an essential gene	Uncharacterized	chr5:108504-110552	108504-110552	99.3%	63.92	73.75	47.69	50.15	35.89	39.33	68.84	48.92	37.61	0.25	0.20	0.16	-0.38	-0.23	Matched[1567]
YEL022W	GEA2	"Guanine nucleotide exchange factor for ADP ribosylation factors (ARFs), involved in vesicular transport between the Golgi and ER, Golgi organization, and actin cytoskeleton organization; similar to but not functionally redundant with Gea1p"	Verified	chr5:111421-115800	111421-115800	98.9%	164.30	132.22	126.68	126.92	54.92	52.15	148.26	126.80	53.54	0.55	0.51	0.22	-1.24	-0.77	Matched[1568]
YEL021W	URA3	"Orotidine-5'-phosphate (OMP) decarboxylase, catalyzes the sixth enzymatic step in the de novo biosynthesis of pyrimidines, converting OMP into uridine monophosphate (UMP); converts 5-FOA into 5-fluorouracil, a toxic compound"	Verified	chr5:116167-116970	116167-116970	98.3%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	-0.09	
YEL020W-A	TIM9	"Mitochondrial intermembrane space protein, forms a complex with Mrs11p/Tim10p that mediates import and insertion of a subset of polytopic inner membrane proteins; may prevent aggregation of incoming proteins in a chaperone-like manner"	Verified	chr5:117211-117474	117211-117474	98.3%	427.81	312.19	393.13	393.13	836.36	528.02	370.00	393.13	682.19	1.37	1.60	2.83	0.80	0.03	Matched[1569]
YEL020C-B		Dubious open reading frame unlikely to encode a protein; partially overlaps verified gene YEL020W-A; identified by fungal homology and RT-PCR	Dubious	chr5:117183-117380	117183-117380	98.5%	369.07	312.69	348.57	328.06	779.15	512.60	340.88	338.32	645.88	1.26	1.37	2.68	0.93	NaN	Matched[1569]
YEL020C		Hypothetical protein with low sequence identity to Pdc1p	Uncharacterized	chr5:118617-120299	118617-120299	98.8%	76.97	81.78	55.32	71.56	164.16	159.95	79.37	63.44	162.05	0.29	0.26	0.67	1.35	1.60	Covered/w/another[1571]
YEL019C	MMS21	SUMO ligase involved in chromosomal organization and DNA repair; essential subunit of the Mms21-Smc5-Smc6 complex; mutants are sensitive to methyl methanesulfonate and show increased spontaneous mutation and mitotic recombination	Verified	chr5:120498-121301	120498-121301	98.9%	33.94	31.43	27.66	27.66	22.63	31.43	32.68	27.66	27.03	0.12	0.11	0.11	-0.03	0.83	Covered/w/another[1571]
YEL018W	EAF5	"Esa1p-associated factor, non-essential subunit of the NuA4 acetyltransferase complex"	Verified	chr5:121471-122310	121471-122310	98.2%	151.51	136.96	113.93	105.45	80.00	77.57	144.24	109.69	78.78	0.53	0.45	0.33	-0.48	-0.30	Matched[1572]
YEL018C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr5:121455-121988	121455-121988	98.3%	133.39	121.95	104.80	100.99	81.94	76.22	127.67	102.90	79.08	0.47	0.42	0.33	-0.38	NaN	Matched[1572]
YEL017C-A	PMP2	Proteolipid associated with plasma membrane H(+)-ATPase (Pma1p); regulates plasma membrane H(+)-ATPase activity; nearly identical to PMP1	Verified	chr5:122798-122929	122798-122929	85.0%	4587.97	4890.87	3438.75	3020.04	3153.68	2191.54	4739.42	3229.40	2672.61	17.50	13.11	11.07	-0.27	-0.62	Matched[1573]
YEL017W	GTT3	"Protein of unknown function with a possible role in glutathione metabolism, as suggested by computational analysis of large-scale protein-protein interaction data; GFP-fusion protein localizes to the nuclear periphery"	Verified	chr5:123657-124670	123657-124670	98.8%	271.55	277.54	233.61	196.67	332.45	207.65	274.54	215.14	270.05	1.01	0.87	1.12	0.33	0.56	Matched[1575]
YEL016C	NPP2	Nucleotide pyrophosphatase/phosphodiesterase family member; mediates extracellular nucleotide phosphate hydrolysis along with Npp1p and Pho5p; activity and expression enhanced during conditions of phosphate starvation	Verified	chr5:124737-126218	124737-126218	99.1%	132.77	170.21	113.02	100.09	90.55	59.23	151.49	106.55	74.89	0.56	0.43	0.31	-0.51	-0.33	Matched[1576]
YEL015W	EDC3	"Non-essential conserved protein of unknown function, plays a role in mRNA decapping by specifically affecting the function of the decapping enzyme Dcp1p; localizes to cytoplasmic mRNA processing bodies"	Verified	chr5:126629-128284	126629-128284	98.7%	220.85	209.83	205.55	178.02	165.79	116.85	215.34	191.79	141.32	0.79	0.78	0.59	-0.44	-0.17	Matched[1577]
YEL014C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr5:128303-128608	128303-128608	98.7%	82.79	66.23	92.73	62.92	105.97	72.86	74.51	77.83	89.42	0.28	0.32	0.37	0.20	-0.01	
YEL013W	VAC8	"Phosphorylated vacuolar membrane protein that interacts with Atg13p, required for the cytoplasm-to-vacuole targeting (Cvt) pathway; interacts with Nvj1p to form nucleus-vacuole junctions"	Verified	chr5:128825-130561	128825-130561	98.8%	336.14	404.30	364.10	346.63	482.37	338.47	370.22	355.37	410.42	1.37	1.44	1.70	0.21	0.48	Matched[1578]
YEL012W	UBC8	"Ubiquitin-conjugating enzyme that negatively regulates gluconeogenesis by mediating the glucose-induced ubiquitination of fructose-1,6-bisphosphatase (FBPase); cytoplasmic enzyme that catalyzes the ubiquitination of histones in vitro"	Verified	chr5:131772-132551	131772-131776,131900-132551	98.5%	168.51	213.35	190.16	207.16	517.91	293.74	190.93	198.66	405.82	0.70	0.81	1.68	1.03	0.62	Matched[1579]
YEL011W	GLC3	"Glycogen branching enzyme, involved in glycogen accumulation; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern"	Verified	chr5:133120-135234	133120-135234	98.8%	210.11	523.12	610.71	856.24	1699.55	1509.06	366.62	733.47	1604.31	1.35	2.98	6.65	1.13	1.30	Matched[1580]
YEL010W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr5:136279-136629	136279-136629	98.8%	0.00	8.65	2.88	2.88	8.65	8.65	4.33	2.88	8.65	0.02	0.01	0.04	1.58	0.02	
YEL009C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr5:136371-136778	136371-136778	98.5%	2.49	9.95	2.49	2.49	9.95	12.44	6.22	2.49	11.20	0.02	0.01	0.05	2.17	NaN	
YEL009C	GCN4	Transcriptional activator of amino acid biosynthetic genes in response to amino acid starvation; expression is tightly regulated at both the transcriptional and translational levels	Verified	chr5:138918-139763	138918-139763	98.8%	6110.35	6390.27	5238.30	4886.61	2173.55	1379.26	6250.31	5062.45	1776.40	23.07	20.55	7.36	-1.51	-1.65	Frag>80[1582,1583,1584]
YEL008W		Hypothetical protein predicted to be involved in metabolism	Dubious	chr5:140512-140892	140512-140892	98.2%	26.74	34.76	13.37	13.37	13.37	40.11	30.75	13.37	26.74	0.11	0.05	0.11	1.00	0.25	Matched[1585]
YEL008C-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr5:140726-140818	140726-140818	98.5%	32.74	21.83	10.91	0.00	0.00	10.91	27.29	5.46	5.46	0.10	0.02	0.02	0.00	NaN	Matched[1585]
YEL007W		Putative protein with sequence similarity to S. pombe gti1+ (gluconate transport inducer 1)	Uncharacterized	chr5:141891-143891	141891-143891	96.6%	338.33	353.85	401.97	293.84	450.59	385.93	346.09	347.90	418.26	1.28	1.41	1.73	0.27	0.98	Matched[1586]
YEL006W	YEA6	"Putative mitochondrial NAD+ transporter, member of the mitochondrial carrier subfamily (see also YIA6); has putative human ortholog"	Verified	chr5:144326-145333	144326-145333	99.1%	179.25	185.25	186.26	130.18	164.23	113.16	182.25	158.22	138.69	0.67	0.64	0.57	-0.19	0.15	Covered/w/another[1587]
YEL005C	VAB2	"Protein with a potential role in vacuolar function, as suggested by its ability to bind Vac8p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern"	Verified	chr5:145906-146754	145906-146754	99.1%	93.85	115.24	89.10	97.42	234.04	166.32	104.54	93.26	200.18	0.39	0.38	0.83	1.10	1.19	Covered/w/another[1587]
YEL004W	YEA4	Uridine diphosphate-N-acetylglucosamine (UDP-GlcNAc) transporter required for cell wall chitin synthesis; localized to the ER	Verified	chr5:146950-147978	146950-147978	99.2%	120.55	127.41	97.03	87.23	110.75	112.71	123.98	92.13	111.73	0.46	0.37	0.46	0.28	0.42	Covered/w/another[1587]
YEL003W	GIM4	Subunit of the heterohexameric cochaperone prefoldin complex which binds specifically to cytosolic chaperonin and transfers target proteins to it	Verified	chr5:148175-148598	148175-148193,148282-148598	98.8%	725.99	433.79	451.86	418.73	385.59	192.80	579.89	435.30	289.19	2.14	1.77	1.20	-0.59	-0.89	Frag<80[1588]
YEL002C	WBP1	Beta subunit of the oligosaccharyl transferase (OST) glycoprotein complex; required for N-linked glycosylation of proteins in the endoplasmic reticulum	Verified	chr5:148721-150013	148721-150013	98.9%	815.12	761.93	748.63	758.02	519.43	449.02	788.53	753.32	484.22	2.91	3.06	2.01	-0.64	-0.40	Matched[1589]
YEL001C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion localizes to the ER; YEL001C is non-essential; null mutant displays increased levels of spontaneous Rad52 foci	Uncharacterized	chr5:150300-150977	150300-150977	98.9%	925.66	953.98	916.71	822.81	550.03	481.46	939.82	869.76	515.74	3.47	3.53	2.14	-0.75	-0.51	Frag>80[1590,1591]
YER001W	MNN1	"Alpha-1,3-mannosyltransferase, integral membrane glycoprotein of the Golgi complex, required for addition of alpha1,3-mannose linkages to N-linked and O-linked oligosaccharides, one of five S. cerevisiae proteins of the MNN1 family"	Verified	chr5:153519-155807	153519-155807	98.9%	246.58	158.20	182.94	133.89	42.86	30.05	202.39	158.42	36.46	0.75	0.64	0.15	-2.12	-1.87	Covered[1593]
YER002W	NOP16	"Constituent of 66S pre-ribosomal particles, involved in 60S ribosomal subunit biogenesis"	Verified	chr5:156802-157497	156802-157497	98.0%	477.86	310.76	370.85	262.38	86.48	54.24	394.31	316.62	70.36	1.46	1.29	0.29	-2.17	-2.06	Matched[1594]
YER003C	PMI40	"Mannose-6-phosphate isomerase, catalyzes the interconversion of fructose-6-P and mannose-6-P; required for early steps in protein mannosylation"	Verified	chr5:157735-159117	157735-158993,159087-159117	98.9%	977.03	649.26	899.40	818.64	517.53	440.68	813.15	859.02	479.11	3.00	3.49	1.99	-0.84	-0.28	Matched[1595]
YER004W		"Protein of unknown function, localized to the mitochondrial outer membrane"	Verified	chr5:159579-160274	159579-160274	98.4%	446.96	344.71	464.49	479.09	544.82	464.49	395.84	471.79	504.66	1.46	1.92	2.09	0.10	0.52	Matched[1596]
YER005W	YND1	"Apyrase with wide substrate specificity, involved in preventing the inhibition of glycosylation by hydrolyzing nucleoside tri- and diphosphates which are inhibitors of glycotransferases; partially redundant with Gda1p"	Verified	chr5:160549-162441	160549-162441	98.7%	110.31	128.51	96.39	83.00	121.02	99.06	119.41	89.69	110.04	0.44	0.36	0.46	0.29	0.70	Matched[1597]
YER006W	NUG1	"GTPase that associates with nuclear 60S pre-ribosomes, required for export of 60S ribosomal subunits from the nucleus"	Verified	chr5:162722-164284	162722-164284	98.5%	421.38	164.92	273.35	239.58	33.76	13.63	293.15	256.47	23.70	1.08	1.04	0.10	-3.44	-2.96	Matched[1598]
YER007W	PAC2	"Microtubule effector required for tubulin heterodimer formation, binds alpha-tubulin, required for normal microtubule function, null mutant exhibits cold-sensitive microtubules and sensitivity to benomyl"	Verified	chr5:164526-166082	164526-166082	98.9%	46.12	40.27	27.93	25.98	40.27	24.04	43.20	26.96	32.16	0.16	0.11	0.13	0.25	-0.13	Matched[1599]
YER006C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF PAC2"	Dubious	chr5:164343-164660	164343-164660	98.9%	34.98	22.26	12.72	6.36	15.90	9.54	28.62	9.54	12.72	0.11	0.04	0.05	0.42	NaN	Overlap[1598,1599]
YER007C-A	TMA20	Protein of unknown function that associates with ribosomes and has a putative RNA binding domain; interacts with Tma22p; null mutant exhibits translation defects; has homology to human oncogene MCT-1	Verified	chr5:166236-166884	166236-166770,166874-166884	99.1%	630.27	454.68	532.31	532.31	449.13	360.42	542.47	532.31	404.77	2.00	2.16	1.68	-0.40	-0.31	Frag>80[1600,1601]
YER008C	SEC3	"Non-essential subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, Exo84p) which mediates targeting of post-Golgi vesicles to sites of active exocytosis; Sec3p specifically is a spatial landmark for secretion"	Verified	chr5:167807-171817	167807-171817	99.2%	131.42	163.84	118.61	131.92	117.35	163.84	147.63	125.26	140.59	0.54	0.51	0.58	0.17	0.64	Matched[1603]
YER009W	NTF2	"Nuclear envelope protein, interacts with GDP-bound Gsp1p and with proteins of the nuclear pore to transport Gsp1p into the nucleus where it is an essential player in nucleocytoplasmic transport"	Verified	chr5:172114-172491	172114-172491	99.2%	2625.46	2230.57	2350.64	2481.38	1766.31	1603.56	2428.02	2416.01	1684.94	8.96	9.81	6.98	-0.52	-0.48	Matched[1604]
YER010C		"Protein of unknown function, forms a ring-shaped homotrimer; has similarity to members of the prokaryotic rraA family; possibly involved in a phosphotransfer reaction"	Verified	chr5:172633-173337	172633-173337	98.9%	291.14	381.50	328.43	268.20	361.42	216.57	336.32	298.31	288.99	1.24	1.21	1.20	-0.05	-0.25	Matched[1605]
YER011W	TIR1	Cell wall mannoprotein of the Srp1p/Tip1p family of serine-alanine-rich proteins; expression is downregulated at acidic pH and induced by cold shock and anaerobiosis; abundance is increased in cells cultured without shaking	Verified	chr5:175247-176011	175247-176011	73.5%	158.39	2142.67	149.49	113.90	121.01	90.76	1150.53	131.69	105.89	4.25	0.53	0.44	-0.31	-0.02	Frag>80[1607,1608]
YER012W	PRE1	20S proteasome beta-type subunit; localizes to the nucleus throughout the cell cycle	Verified	chr5:177834-178430	177834-178430	98.7%	806.00	644.80	782.24	646.49	1269.23	761.88	725.40	714.37	1015.55	2.68	2.90	4.21	0.51	0.36	Matched[1610]
YER013W	PRP22	"DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase, associates with lariat intermediates before the second catalytic step of splicing; mediates ATP-dependent mRNA release from the spliceosome and unwinds RNA duplexes"	Verified	chr5:178840-182277	178840-182277	98.6%	53.67	66.35	47.18	54.55	53.67	58.98	60.01	50.87	56.32	0.22	0.21	0.23	0.15	0.62	Matched[1611]
YER014W	HEM14	"Protoporphyrinogen oxidase, a mitochondrial enzyme that catalyzes the seventh step in the heme biosynthetic pathway, converting protoporphyrinogen IX to protoporphyrin IX"	Verified	chr5:182599-184218	182599-184218	98.6%	115.16	212.79	102.64	123.92	227.18	258.48	163.97	113.28	242.83	0.61	0.46	1.01	1.10	1.47	Matched[1612]
YER015W	FAA2	"Long chain fatty acyl-CoA synthetase; accepts a wider range of acyl chain lengths than Faa1p, preferring C9:0-C13:0; involved in the activation of endogenous pools of fatty acids"	Verified	chr5:184540-186774	184540-186774	98.9%	37.99	29.40	45.68	47.49	42.06	28.04	33.70	46.59	35.05	0.12	0.19	0.15	-0.41	-0.06	Covered[1613]
YER014C-A	BUD25	Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern	Verified	chr5:183730-184699	183730-184168,184677-184699	98.6%	160.32	311.86	138.36	147.14	331.63	314.06	236.09	142.75	322.84	0.87	0.58	1.34	1.18	-0.08	
YER016W	BIM1	Microtubule-binding protein that together with Kar9p makes up the cortical microtubule capture site and delays the exit from mitosis when the spindle is oriented abnormally	Verified	chr5:188276-189310	188276-189310	98.3%	306.76	316.59	276.28	248.75	239.90	138.63	311.68	262.52	189.27	1.15	1.07	0.78	-0.47	1.83	Covered/w/another[1614]
YER017C	AFG3	"Component, with Yta12p, of the mitochondrial inner membrane m-AAA protease that mediates degradation of misfolded or unassembled proteins and is also required for correct assembly of mitochondrial enzyme complexes"	Verified	chr5:189502-191787	189502-191787	98.9%	215.92	219.90	228.31	201.76	244.24	219.90	217.91	215.04	232.07	0.80	0.87	0.96	0.11	0.50	Covered/w/another[1614]
YER018C	SPC25	"Component of the evolutionarily conserved kinetochore-associated Ndc80 complex (Ndc80p-Nuf2p-Spc24p-Spc25p); involved in chromosome segregation, spindle checkpoint activity and kinetochore clustering"	Verified	chr5:191958-192623	191958-192623	98.4%	129.76	174.03	157.24	106.86	135.87	88.54	151.90	132.05	112.21	0.56	0.54	0.46	-0.23	-0.28	Covered/w/another[1614]
YER019W	ISC1	"Mitochondrial membrane localized inositol phosphosphingolipid phospholipase C, hydrolyzes complex sphingolipids to produce ceramide; activated by phosphatidylserine, cardiolipin, and phosphatidylglycerol; mediates Na+ and Li+ halotolerance"	Verified	chr5:192796-194229	192796-194229	98.5%	170.64	219.49	174.18	140.90	193.30	115.41	195.07	157.54	154.35	0.72	0.64	0.64	-0.03	-0.10	Covered/w/another[1614]
YER019C-A	SBH2	"Ssh1p-Sss1p-Sbh2p complex component, involved in protein translocation into the endoplasmic reticulum; homologous to Sbh1p"	Verified	chr5:194272-194538	194272-194538	98.7%	1783.68	1415.56	1760.91	1540.80	1499.05	1001.90	1599.62	1650.85	1250.47	5.90	6.70	5.18	-0.40	-0.73	Matched[1615]
YER020W	GPA2	"Nucleotide binding alpha subunit of the heterotrimeric G protein that interacts with the receptor Gpr1p, has signaling role in response to nutrients; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery"	Verified	chr5:195167-196516	195167-196516	98.3%	221.64	341.51	277.43	247.28	434.99	405.59	281.58	262.35	420.29	1.04	1.06	1.74	0.68	1.05	Matched[1617]
YER021W	RPN3	"Essential, non-ATPase regulatory subunit of the 26S proteasome lid, similar to the p58 subunit of the human 26S proteasome; temperature-sensitive alleles cause metaphase arrest, suggesting a role for the proteasome in cell cycle control"	Verified	chr5:196947-198518	196947-198518	98.8%	607.55	520.66	592.10	611.41	1005.28	780.03	564.10	601.75	892.66	2.08	2.44	3.70	0.57	0.65	Matched[1618]
YER022W	SRB4	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation	Verified	chr5:198811-200874	198811-200874	98.8%	133.33	146.56	120.58	115.68	151.95	91.17	139.94	118.13	121.56	0.52	0.48	0.50	0.04	0.02	Matched[1619]
YER023W	PRO3	"Delta 1-pyrroline-5-carboxylate reductase, catalyzes the last step in proline biosynthesis"	Verified	chr5:201075-201935	201075-201935	98.3%	1173.96	1211.75	1165.69	1105.46	999.16	875.15	1192.85	1135.57	937.16	4.40	4.61	3.88	-0.28	-0.11	Frag>80[1620,1621]
YER023C-A		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps verified gene PRO3; identified by gene-trapping, microarray expression analysis, and genome-wide homology searching"	Dubious	chr5:201521-201733	201521-201733	98.0%	1379.37	1479.94	1403.31	1254.84	1163.84	1039.31	1429.65	1329.08	1101.58	5.28	5.39	4.56	-0.27	NaN	Matched[1621]
YER024W	YAT2	"Carnitine acetyltransferase; has similarity to Yat1p, which is a carnitine acetyltransferase associated with the mitochondrial outer membrane"	Verified	chr5:202191-204962	202191-204962	98.8%	33.94	37.23	31.39	24.09	39.05	29.93	35.59	27.74	34.49	0.13	0.11	0.14	0.31	0.29	Frag>80[1621,1622,1623]
YER025W	GCD11	"Gamma subunit of the translation initiation factor eIF2, involved in the identification of the start codon; binds GTP when forming the ternary complex with GTP and tRNAi-Met"	Verified	chr5:205250-206833	205250-206833	98.8%	954.73	684.42	826.93	743.85	157.21	147.62	819.58	785.39	152.41	3.03	3.19	0.63	-2.37	-1.87	Matched[1624]
YER026C	CHO1	"Phosphatidylserine synthase, functions in phospholipid biosynthesis; catalyzes the reaction CDP-diaclyglycerol + L-serine = CMP + L-1-phosphatidylserine, transcriptionally repressed by myo-inositol and choline"	Verified	chr5:207643-208473	207643-208473	98.9%	851.37	632.44	1016.77	1103.13	1423.00	785.69	741.90	1059.95	1104.34	2.74	4.30	4.58	0.06	-0.20	Frag>80[1625,1626,1627]
YER027C	GAL83	"One of three possible beta-subunits of the Snf1 kinase complex, allows nuclear localization of the Snf1 kinase complex in the presence of a nonfermentable carbon source; contains glycogen-binding domain"	Verified	chr5:208978-210231	208978-210231	99.0%	265.94	243.38	274.81	277.22	367.48	251.44	254.66	276.01	309.46	0.94	1.12	1.28	0.17	0.46	Matched[1628]
YER028C	MIG3	"Probable transcriptional repressor involved in response to toxic agents such as hydroxyurea that inhibit ribonucleotide reductase; phosphorylation by Snf1p or the Mec1p pathway inactivates Mig3p, allowing induction of damage response genes"	Verified	chr5:210691-211875	210691-211875	98.6%	34.24	17.98	11.98	7.70	47.08	17.12	26.11	9.84	32.10	0.10	0.04	0.13	1.71	-0.81	Matched[1629]
YER029C	SMB1	"Core Sm protein Sm B; part of heteroheptameric complex (with Smd1p, Smd2p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm B and Sm B'"	Verified	chr5:212586-213176	212586-213176	99.4%	277.56	240.10	234.99	236.70	202.64	131.12	258.83	235.85	166.88	0.96	0.96	0.69	-0.50	-0.38	Matched[1630]
YER030W	CHZ1	Histone chaperone for Htz1p/H2A-H2B dimer; required for the stabilization of the Chz1p-Htz1-H2B complex; has overlapping function with Nap1p; null mutant displays weak sensitivity to MMS and benomyl; contains a highly conserved CHZ motif	Verified	chr5:213436-213897	213436-213897	97.9%	725.33	539.57	714.27	601.49	1410.85	816.00	632.45	657.88	1113.42	2.33	2.67	4.61	0.76	-0.15	Matched[1631]
YER031C	YPT31	"GTPase of the Ypt/Rab family, very similar to Ypt32p; involved in the exocytic pathway; mediates intra-Golgi traffic or the budding of post-Golgi vesicles from the trans-Golgi"	Verified	chr5:214075-214746	214075-214746	99.2%	855.11	790.60	877.61	871.61	711.09	651.08	822.85	874.61	681.09	3.04	3.55	2.82	-0.36	-0.19	Matched[1632]
YER032W	FIR1	"Protein involved in 3' mRNA processing, interacts with Ref2p; potential Cdc28p substrate"	Verified	chr5:215062-217692	215062-217692	99.0%	126.73	122.50	94.09	98.31	58.37	80.26	124.62	96.20	69.32	0.46	0.39	0.29	-0.47	-0.02	Covered/w/another[1633]
YER033C	ZRG8	"Protein of unknown function; authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GFP-fusion protein is localized to the cytoplasm; transcription induced under conditions of zinc deficiency"	Verified	chr5:218056-221286	218056-221286	98.5%	51.21	75.09	44.93	53.41	84.21	145.47	63.15	49.17	114.84	0.23	0.20	0.48	1.22	1.66	Covered/w/another[1633]
YER034W		Putative protein of unknown function; non-essential gene; expression induced upon calcium shortage	Uncharacterized	chr5:221845-222402	221845-222402	98.1%	120.53	87.66	74.87	60.26	157.05	115.05	104.09	67.57	136.05	0.38	0.27	0.56	1.01	0.91	Covered/w/another[1633]
YER035W	EDC2	"RNA-binding protein, activates mRNA decapping directly by binding to the mRNA substrate and enhancing the activity of the decapping proteins Dcp1p and Dcp2p"	Verified	chr5:222638-223075	222638-223075	98.3%	160.20	318.08	215.92	222.89	1495.21	1019.25	239.14	219.41	1257.23	0.88	0.89	5.21	2.52	2.16	Matched[1634]
YER036C	ARB1	"ATPase of the ATP-binding cassette (ABC) family involved in 40S and 60S ribosome biogenesis, has similarity to Gcn20p; shuttles from nucleus to cytoplasm, physically interacts with Tif6p, Lsg1p"	Verified	chr5:223366-225198	223366-225198	98.9%	932.07	542.15	785.37	659.07	329.81	306.09	737.11	722.22	317.95	2.72	2.93	1.32	-1.18	-0.45	Matched[1635]
YER037W	PHM8	"Protein of unknown function, expression is induced by low phosphate levels and by inactivation of Pho85p"	Verified	chr5:225888-226853	225888-226853	98.9%	154.95	235.56	141.34	96.32	1001.92	598.85	195.25	118.83	800.38	0.72	0.48	3.32	2.75	2.87	Matched[1636]
YER038C	KRE29	Essential subunit of the Mms21-Smc5-Smc6 complex; protein of unknown function; required for growth and DNA repair; heterozygous mutant shows haploinsufficiency in K1 killer toxin resistance	Verified	chr5:226857-228251	226857-228251	99.3%	51.97	63.51	39.70	41.14	203.54	99.60	57.74	40.42	151.57	0.21	0.16	0.63	1.91	0.28	Frag>80[1637]
YER038W-A		"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; 99% of ORF overlaps the verified gene HVG1; protein product detected in mitochondria"	Dubious	chr5:228450-228830	228450-228830	98.5%	53.32	77.31	63.98	58.65	77.31	77.31	65.31	61.31	77.31	0.24	0.25	0.32	0.33	NaN	Matched[1638]
YER039C	HVG1	"Protein of unknown function, has homology to Vrg4p"	Verified	chr5:228455-229204	228455-229204	98.4%	62.30	67.72	56.88	63.66	85.33	58.24	65.01	60.27	71.78	0.24	0.24	0.30	0.25	0.78	Matched[1638]
YER039C-A		Putative protein of unknown function; YER039C-A is not an essential gene	Uncharacterized	chr5:229262-229480	229262-229480	99.0%	46.11	41.50	50.72	32.28	50.72	27.67	43.80	41.50	39.19	0.16	0.17	0.16	-0.08	0.83	Covered/w/another[1638]
YER040W	GLN3	"Transcriptional activator of genes regulated by nitrogen catabolite repression (NCR), localization and activity regulated by quality of nitrogen source"	Verified	chr5:229794-231986	229794-231986	99.0%	81.54	101.35	63.58	61.73	52.52	52.98	91.45	62.65	52.75	0.34	0.25	0.22	-0.25	0.20	Covered/w/another[1639]
YER041W	YEN1	"Protein of unknown function, has similarity to endonuclease Rth1p; potentially phosphorylated by Cdc28p"	Verified	chr5:232460-234739	232460-234739	98.8%	51.94	78.13	47.06	51.94	84.35	70.14	65.04	49.50	77.24	0.24	0.20	0.32	0.64	0.85	Covered/w/another[1639]
YER042W	MXR1	"Peptide methionine sulfoxide reductase, reverses the oxidation of methionine residues; involved in oxidative damage repair, providing resistance to oxidative stress and regulation of lifespan"	Verified	chr5:234936-235490	234936-235490	98.8%	125.78	144.01	118.49	83.85	224.21	118.49	134.89	101.17	171.35	0.50	0.41	0.71	0.76	0.26	Covered/w/another[1639]
YER043C	SAH1	"S-adenosyl-L-homocysteine hydrolase, catabolizes S-adenosyl-L-homocysteine which is formed after donation of the activated methyl group of S-adenosyl-L-methionine (AdoMet) to an acceptor"	Verified	chr5:235769-237118	235769-237118	98.8%	2148.08	1523.52	1995.88	1929.15	575.82	490.35	1835.80	1962.51	533.08	6.78	7.97	2.21	-1.88	-1.19	Matched[1640]
YER044C	ERG28	"Endoplasmic reticulum membrane protein, may facilitate protein-protein interactions between the Erg26p dehydrogenase and the Erg27p 3-ketoreductase and/or tether these enzymes to the ER, also interacts with Erg6p"	Verified	chr5:237569-238015	237569-238015	98.8%	489.01	1109.33	504.86	577.30	697.29	504.86	799.17	541.08	601.08	2.95	2.20	2.49	0.15	-0.19	Frag>80[1641,1642]
YER044C-A	MEI4	Meiosis-specific protein involved in recombination; required for chromosome synapsis; required for production of viable spores	Verified	chr5:238459-239773	238459-239622,239711-239773	99.3%	8.21	5.75	4.93	4.93	4.10	5.75	6.98	4.93	4.93	0.03	0.02	0.02	0.00	0.63	
YER045C	ACA1	"Basic leucine zipper (bZIP) transcription factor of the ATF/CREB family, may regulate transcription of genes involved in utilization of non-optimal carbon sources"	Verified	chr5:240031-241500	240031-241500	98.7%	103.34	143.29	92.31	68.20	54.42	48.22	123.31	80.26	51.32	0.46	0.33	0.21	-0.65	0.11	Covered/w/another[1643]
YER046W	SPO73	"Meiosis-specific protein of unknown function, required for spore wall formation during sporulation; dispensible for both nuclear divisions during meiosis"	Verified	chr5:243179-243610	243179-243610	98.7%	82.09	133.69	98.50	86.78	159.48	91.47	107.89	92.64	125.48	0.40	0.38	0.52	0.44	-0.18	Covered/w/another[1643]
YER046W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr5:243699-244028	243699-244028	99.1%	70.36	85.66	64.24	116.25	183.56	79.54	78.01	90.25	131.55	0.29	0.37	0.55	0.54	NaN	Covered/w/another[1643]
YER047C	SAP1	"Putative ATPase of the AAA family, interacts with the Sin1p transcriptional repressor in the two-hybrid system"	Verified	chr5:243809-246502	243809-246502	99.0%	84.34	82.84	76.09	83.21	86.96	91.46	83.59	79.65	89.21	0.31	0.32	0.37	0.16	0.63	Covered/w/another[1643]
YER048C	CAJ1	"Nuclear type II J heat shock protein of the E. coli dnaJ family, contains a leucine zipper-like motif, binds to non-native substrates for presentation to Ssa3p, may function during protein translocation, assembly and disassembly"	Verified	chr5:246981-248156	246981-248156	99.5%	595.94	507.87	527.54	508.73	878.09	655.79	551.91	518.13	766.94	2.04	2.10	3.18	0.57	0.78	Frag>80[1644,1645,1646]
YER048W-A	ISD11	Protein required for mitochondrial iron-sulfur cluster biosynthesis	Verified	chr5:250717-251001	250717-251001	98.7%	547.23	586.32	511.70	476.16	906.13	557.89	566.78	493.93	732.01	2.09	2.00	3.03	0.57	0.14	Matched[1648]
YER049W	TPA1	"Protein of unknown function; interacts with Sup45p (eRF1), Sup35p (eRF3) and Pab1p; has a role in translation termination efficiency, mRNA poly(A) tail length and mRNA stability"	Verified	chr5:251727-253661	251727-253661	98.7%	321.95	185.32	227.20	179.56	43.97	27.75	253.64	203.38	35.86	0.94	0.83	0.15	-2.50	-2.09	Matched[1650]
YER050C	RSM18	"Mitochondrial ribosomal protein of the small subunit, has similarity to E. coli S18 ribosomal protein"	Verified	chr5:253970-254386	253970-254386	99.2%	449.46	563.03	488.12	529.20	853.00	543.70	506.24	508.66	698.35	1.87	2.06	2.89	0.46	0.19	Matched[1651]
YER051W	JHD1	"JmjC domain family histone demethylase specific for H3-K36, similar to proteins found in human, mouse, drosophila, X. laevis, C. elegans, and S. pombe"	Verified	chr5:254655-256133	254655-256133	98.8%	99.24	91.72	74.60	50.65	93.77	47.91	95.48	62.63	70.84	0.35	0.25	0.29	0.18	0.44	Matched[1652]
YER052C	HOM3	Aspartate kinase (L-aspartate 4-P-transferase); cytoplasmic enzyme that catalyzes the first step in the common pathway for methionine and threonine biosynthesis; expression regulated by Gcn4p and the general control of amino acid synthesis	Verified	chr5:256374-257957	256374-257957	98.9%	387.58	630.22	337.14	284.78	114.29	124.51	508.90	310.96	119.40	1.88	1.26	0.49	-1.38	-0.65	Matched[1653]
YER053C	PIC2	"Mitochondrial phosphate carrier, imports inorganic phosphate into mitochondria; functionally redundant with Mir1p but less abundant than Mir1p under normal conditions; expression is induced at high temperature"	Verified	chr5:258736-259638	258736-259638	99.1%	363.15	1097.26	519.58	583.27	1392.24	686.07	730.20	551.42	1039.15	2.70	2.24	4.31	0.91	0.50	Frag>80[1654,1655,1656]
YER053C-A		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum	Uncharacterized	chr5:260932-261045	260932-261045	98.8%	44.38	26.63	44.38	44.38	4500.00	3159.76	35.50	44.38	3829.88	0.13	0.18	15.87	6.43	4.56	Matched[1658]|Matched[1659]
YER054C	GIP2	"Putative regulatory subunit of the protein phosphatase Glc7p, involved in glycogen metabolism; contains a conserved motif (GVNK motif) that is also found in Gac1p, Pig1p, and Pig2p"	Verified	chr5:262051-263697	262051-263697	99.3%	36.09	104.60	113.77	142.52	910.18	663.68	70.34	128.15	786.93	0.26	0.52	3.26	2.62	2.83	Frag>80[1660,1661]
YER055C	HIS1	"ATP phosphoribosyltransferase, a hexameric enzyme, catalyzes the first step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts; transcription is regulated by general amino acid control"	Verified	chr5:264891-265784	264891-265784	99.1%	1639.34	1779.24	1623.54	1413.69	596.84	326.06	1709.29	1518.62	461.45	6.31	6.16	1.91	-1.72	-2.60	Matched[1663]
YER056C	FCY2	"Purine-cytosine permease, mediates purine (adenine, guanine, and hypoxanthine) and cytosine accumulation"	Verified	chr5:266511-268112	266511-268112	81.5%	788.44	1037.22	676.68	528.18	65.07	28.32	912.83	602.43	46.69	3.37	2.45	0.19	-3.69	-3.16	Matched[1665]
YER056C-A	RPL34A	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl34Bp and has similarity to rat L34 ribosomal protein"	Verified	chr5:269421-270183	269421-269749,270147-270183	75.7%	4772.56	4061.37	3891.70	3191.34	1259.93	833.94	4416.97	3541.52	1046.93	16.31	14.38	4.34	-1.76	-2.83	Frag>80[1667,1668,1669]
YER057C	HMF1	"Member of the p14.5 protein family with similarity to Mmf1p, functionally complements Mmf1p function when targeted to mitochondria; heat shock inducible; high-dosage growth inhibitor; forms a homotrimer in vitro"	Verified	chr5:270735-271124	270735-271124	98.6%	1408.86	1772.77	1289.29	1229.50	1109.93	1034.55	1590.82	1259.40	1072.24	5.87	5.11	4.44	-0.23	-0.04	Matched[1670]
YER058W	PET117	Protein required for assembly of cytochrome c oxidase	Verified	chr5:271766-272089	271766-272089	97.8%	151.42	173.50	198.74	205.05	542.59	365.93	162.46	201.89	454.26	0.60	0.82	1.88	1.17	0.83	Matched[1672]
YER059W	PCL6	Pho85p cyclin of the Pho80p subfamily; forms the major Glc8p kinase together with Pcl7p and Pho85p; involved in the control of glycogen storage by Pho85p; stabilized by Elongin C binding	Verified	chr5:272622-273884	272622-273884	98.7%	145.96	138.75	157.19	125.91	208.52	125.11	142.36	141.55	166.82	0.53	0.57	0.69	0.24	0.68	Matched[1673]
YER060W	FCY21	"Putative purine-cytosine permease, very similar to Fcy2p but cannot substitute for its function"	Verified	chr5:274565-276151	274565-276151	92.3%	155.02	167.99	116.09	96.97	47.12	28.68	161.51	106.53	37.90	0.60	0.43	0.16	-1.49	-0.91	Covered[1674]
YER060W-A	FCY22	"Putative purine-cytosine permease, very similar to Fcy2p but cannot substitute for its function"	Verified	chr5:276570-278162	276570-278162	75.1%	108.66	137.08	84.42	45.97	19.22	30.09	122.87	65.19	24.66	0.45	0.26	0.10	-1.40	-2.78	Frag<80[1675]
YER061C	CEM1	Mitochondrial beta-keto-acyl synthase with possible role in fatty acid synthesis; required for mitochondrial respiration	Verified	chr5:278296-279624	278296-279624	99.0%	162.69	193.10	155.09	175.62	103.39	101.87	177.90	165.35	102.63	0.66	0.67	0.43	-0.69	-0.36	Matched[1676]
YER062C	HOR2	"One of two redundant DL-glycerol-3-phosphatases (RHR2/GPP1 encodes the other) involved in glycerol biosynthesis; induced in response to hyperosmotic stress and oxidative stress, and during the diauxic transition"	Verified	chr5:279928-280680	279928-280680	97.6%	657.40	1248.11	778.54	684.63	1388.31	1094.31	952.76	731.58	1241.31	3.52	2.97	5.14	0.76	0.99	Matched[1677]
YER063W	THO1	"Conserved nuclear RNA-binding protein; specifically binds to transcribed chromatin in a THO- and RNA-dependent manner, genetically interacts with shuttling hnRNP NAB2; overproduction suppresses transcriptional defect caused by hpr1 mutation"	Verified	chr5:281708-282364	281708-282364	98.3%	748.02	693.81	689.17	613.28	630.32	371.68	720.91	651.22	501.00	2.66	2.64	2.08	-0.38	-0.27	Frag>80[1678,1679]
YER064C		Non-essential nuclear protein; null mutation has global effects on transcription	Uncharacterized	chr5:282703-284220	282703-284220	98.9%	428.29	664.08	278.42	227.13	148.53	138.54	546.18	252.78	143.54	2.02	1.03	0.59	-0.82	-0.24	Matched[1680]
YER065C	ICL1	"Isocitrate lyase, catalyzes the formation of succinate and glyoxylate from isocitrate, a key reaction of the glyoxylate cycle; expression of ICL1 is induced by growth on ethanol and repressed by growth on glucose"	Verified	chr5:285239-286912	285239-286912	99.0%	83.31	80.29	73.04	59.76	95.98	53.73	81.80	66.40	74.85	0.30	0.27	0.31	0.17	0.16	Matched[1681]
YER066W		Putative protein of unknown function; YER066W is not an essential gene	Uncharacterized	chr5:290240-290797	290240-290797	70.6%	91.40	152.33	60.93	71.09	109.17	71.09	121.87	66.01	90.13	0.45	0.27	0.37	0.45	0.46	Frag<80[1682,1683,1684]
YER067W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YER067W is not an essential gene	Uncharacterized	chr5:292064-292549	292064-292549	98.8%	539.49	874.85	1206.04	1233.12	13210.21	7134.18	707.17	1219.58	10172.19	2.61	4.95	42.15	3.06	1.98	Matched[1686]
YER066C-A		"Dubious open reading frame unlikely to encode a protein, partially overlaps uncharacterized ORF YER067W"	Dubious	chr5:291701-292201	291701-292201	98.9%	211.98	393.67	474.43	547.11	4609.02	2545.76	302.83	510.77	3577.39	1.12	2.07	14.82	2.81	0.27	Frag>80[1685,1686]
YER067C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YER067W"	Dubious	chr5:292238-292561	292238-292561	98.9%	549.21	823.82	1226.37	1195.16	13917.57	7479.91	686.52	1210.77	10698.74	2.53	4.91	44.33	3.14	NaN	Matched[1686]
YER068W	MOT2	"Component of the CCR4-NOT complex, which has multiple roles in transcription regulation, mRNA degradation, and post-transcriptional modifications; with Ubc4p, ubiquitylates subunits of the nascent polypeptide-associated complex (NAC)"	Verified	chr5:293048-294811	293048-294811	98.9%	220.11	168.52	202.34	192.02	128.40	124.39	194.32	197.18	126.39	0.72	0.80	0.52	-0.64	0.05	Matched[1687]
YER069W	"ARG5,6"	"Protein that is processed in the mitochondrion to yield acetylglutamate kinase and N-acetyl-gamma-glutamyl-phosphate reductase, which catalyze the 2nd and 3rd steps in arginine biosynthesis; enzymes form a complex with Arg2p"	Verified	chr5:295408-297999	295408-297999	98.9%	55.01	147.09	47.60	36.67	61.64	58.13	101.05	42.14	59.89	0.37	0.17	0.25	0.51	0.70	Matched[1688]
YER068C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr5:295299-295730	295299-295730	99.0%	18.71	58.47	23.39	23.39	39.76	42.10	38.59	23.39	40.93	0.14	0.09	0.17	0.81	NaN	Covered/w/another[1688]
YER070W	RNR1	"Ribonucleotide-diphosphate reductase (RNR), large subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits"	Verified	chr5:298948-301614	298948-301614	97.1%	811.48	747.01	629.26	464.42	50.57	20.85	779.24	546.84	35.71	2.88	2.22	0.15	-3.94	-2.86	Matched[1689]
YER071C		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern	Uncharacterized	chr5:301945-302325	301945-302325	99.3%	145.33	145.33	171.75	147.97	288.01	200.81	145.33	159.86	244.41	0.54	0.65	1.01	0.61	-0.08	Matched[1690]
YER072W	VTC1	"Vacuolar transporter chaperon (VTC) involved in distributing V-ATPase and other membrane proteins; together with other VTC proteins, forms a heterotetrameric complex that associates with the SNARE Nyv1p and the V0 sector of the V-ATPase"	Verified	chr5:302804-303193	302804-303193	98.7%	3504.65	3281.23	3686.51	3024.03	1987.44	1234.03	3392.94	3355.27	1610.74	12.52	13.62	6.67	-1.06	-1.55	Matched[1691]
YER073W	ALD5	"Mitochondrial aldehyde dehydrogenase, involved in regulation or biosynthesis of electron transport chain components and acetate formation; activated by K+; utilizes NADP+ as the preferred coenzyme; constitutively expressed"	Verified	chr5:304027-305589	304027-305589	98.6%	439.38	737.28	360.85	309.58	84.37	44.78	588.33	335.22	64.58	2.17	1.36	0.27	-2.38	-2.04	Frag>80[1692,1693,1694]
YER074W	RPS24A	Protein component of the small (40S) ribosomal subunit; identical to Rps24Bp and has similarity to rat S24 ribosomal protein	Verified	chr5:306319-307192	306319-306321,306788-307192	32.6%	8792.23	7084.93	7716.70	5625.82	2286.43	1850.20	7938.58	6671.26	2068.32	29.30	27.08	8.57	-1.69	-2.41	Frag>80[1695,1696]
YER074W-A	YOS1	"Integral membrane protein required for ER to Golgi transport; localized to the Golgi, the ER, and COPII vesicles; interacts with Yip1p and Yif1p"	Verified	chr5:307649-308119	307649-307742,307845-307952,308064-308119	98.5%	472.21	460.40	397.44	401.38	645.35	381.70	466.31	399.41	513.53	1.72	1.62	2.13	0.36	-0.20	Matched[1697]
YER075C	PTP3	Phosphotyrosine-specific protein phosphatase involved in the inactivation of mitogen-activated protein kinase (MAPK) during osmolarity sensing; dephosporylates Hog1p MAPK and regulates its localization; localized to the cytoplasm	Verified	chr5:308409-311195	308409-311195	98.5%	57.93	67.04	47.00	34.25	18.95	14.94	62.48	40.62	16.94	0.23	0.16	0.07	-1.26	-0.20	Matched[1698]
YER076W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YER076C"	Dubious	chr5:313386-313733	313386-313733	98.9%	29.04	81.32	69.70	37.75	55.18	55.18	55.18	53.73	55.18	0.20	0.22	0.23	0.04	NaN	Covered/w/another[1699]
YER076C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; analysis of HA-tagged protein suggests a membrane localization"	Uncharacterized	chr5:312586-313494	312586-313494	98.9%	83.39	92.28	81.16	80.05	107.85	55.59	87.83	80.61	81.72	0.32	0.33	0.34	0.02	0.47	Matched[1699]
YER077C		Hypothetical protein	Uncharacterized	chr5:314530-316596	314530-316596	99.4%	67.68	67.19	61.35	48.69	61.83	51.12	67.43	55.02	56.48	0.25	0.22	0.23	0.04	0.51	Frag>80[1700,1701]
YER078C		"Metallopeptidase, localized to the mitochondrial matrix"	Uncharacterized	chr5:316803-318338	316803-318338	99.1%	141.83	184.51	145.12	120.82	154.31	122.79	163.17	132.97	138.55	0.60	0.54	0.57	0.06	0.21	Matched[1702]
YER078W-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr5:318642-318806	318642-318806	99.8%	0.00	6.07	0.00	12.15	30.37	18.22	3.04	6.07	24.30	0.01	0.02	0.10	2.00	NaN	Covered/w/another[1702]
YER079W		Putative protein of unknown function	Uncharacterized	chr5:318916-319548	318916-319548	98.9%	217.19	392.87	321.00	298.64	1226.51	1063.61	305.03	309.82	1145.06	1.13	1.26	4.74	1.89	1.92	Matched[1703]
YER080W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr5:319959-321842	319959-321842	98.8%	318.02	374.97	355.63	364.76	526.46	414.72	346.49	360.19	470.59	1.28	1.46	1.95	0.39	0.64	Matched[1704]
YER079C-A		"Dubious open reading frame unlikely to encode a protein, partially overlaps uncharacterized ORF YER080W"	Dubious	chr5:319898-320236	319898-320236	98.6%	197.48	218.43	164.57	272.29	215.43	302.21	207.95	218.43	258.82	0.77	0.89	1.07	0.24	NaN	Covered/w/another[1704]
YER081W	SER3	"3-phosphoglycerate dehydrogenase, catalyzes the first step in serine and glycine biosynthesis; isozyme of Ser33p"	Verified	chr5:322682-324091	322682-324091	85.3%	781.14	932.55	678.82	554.87	430.09	275.36	856.85	616.85	352.72	3.16	2.50	1.46	-0.81	-0.21	Matched[1706]
YER082C	UTP7	"Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA"	Verified	chr5:324268-325932	324268-325932	99.1%	273.81	158.11	161.14	137.51	27.87	12.12	215.96	149.33	19.99	0.80	0.61	0.08	-2.90	-2.05	Matched[1707]
YER083C	GET2	Subunit of the GET complex; required for meiotic nuclear division and for the retrieval of HDEL proteins from the Golgi to the ER in an ERD2 dependent fashion; may be involved in cell wall function	Verified	chr5:326170-327027	326170-327027	98.5%	337.18	336.00	354.92	328.90	375.04	356.11	336.59	341.91	365.57	1.24	1.39	1.51	0.10	0.18	Matched[1708]
YER084W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr5:327061-327447	327061-327447	99.1%	10.42	15.64	36.49	20.85	86.00	70.37	13.03	28.67	78.18	0.05	0.12	0.32	1.45	-0.30	Matched[1709]
YER084W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr5:327594-328106	327594-328106	99.5%	5.88	5.88	1.96	11.76	13.72	7.84	5.88	6.86	10.78	0.02	0.03	0.04	0.65	NaN	Frag<80[1709,1710]
YER085C		Putative protein of unknown function	Uncharacterized	chr5:327615-328136	327615-328136	99.5%	5.78	3.85	1.93	5.78	7.70	5.78	4.81	3.85	6.74	0.02	0.02	0.03	0.81	-0.52	Frag<80[1709,1710]
YER086W	ILV1	"Threonine deaminase, catalyzes the first step in isoleucine biosynthesis; expression is under general amino acid control; ILV1 locus exhibits highly positioned nucleosomes whose organization is independent of known ILV1 regulation"	Verified	chr5:328473-330203	328473-330203	99.0%	702.19	794.42	693.44	698.11	137.75	121.41	748.30	695.77	129.58	2.76	2.82	0.54	-2.42	-1.66	Matched[1711]
YER087W		"Protein with similarity to tRNA synthetases; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr5:330572-332302	330572-332302	98.7%	96.61	98.95	118.27	97.78	172.73	121.79	97.78	108.03	147.26	0.36	0.44	0.61	0.45	0.58	Matched[1712]
YER087C-A		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data; overlaps the uncharacterized gene YER087W, a putative tRNA synthetase"	Dubious	chr5:331813-332364	331813-332364	98.7%	143.18	159.71	150.53	130.34	264.34	152.36	151.45	140.43	208.35	0.56	0.57	0.86	0.57	NaN	Covered/w/another[1712]
YER087C-B	SBH1	Beta subunit of the Sec61p ER translocation complex (Sec61p-Sss1p-Sbh1p); involved in protein translocation into the endoplasmic reticulum; interacts with the exocyst complex and also with Rtn1p; homologous to Sbh2p	Verified	chr5:332578-332826	332578-332826	98.6%	1095.72	1018.33	1103.87	920.57	851.32	553.97	1057.03	1012.22	702.65	3.90	4.11	2.91	-0.53	-0.46	Matched[1713]
YER088C	DOT6	"Protein of unknown function, involved in telomeric gene silencing and filamentation"	Verified	chr5:333172-335184	333172-335184	98.2%	487.28	523.20	486.77	498.91	719.02	654.26	505.24	492.84	686.64	1.87	2.00	2.84	0.48	0.87	Covered/w/another[1714]
YER088W-B		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr5:335923-336069	335923-336069	97.6%	536.74	501.89	515.83	341.56	383.39	264.89	519.31	428.70	324.14	1.92	1.74	1.34	-0.40	NaN	Covered/w/another[1714]
YER088C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr5:335692-336015	335692-336015	98.2%	377.01	289.04	279.62	185.36	223.07	113.10	333.03	232.49	168.08	1.23	0.94	0.70	-0.47	NaN	Covered/w/another[1714]
YER089C	PTC2	Type 2C protein phosphatase; dephosphorylates Hog1p to limit maximal osmostress induced kinase activity; dephosphorylates Ire1p to downregulate the unfolded protein response; dephosphorylates Cdc28p; role in DNA checkpoint inactivation	Verified	chr5:335942-337336	335942-337336	98.7%	429.97	476.46	403.83	323.93	301.42	203.37	453.21	363.88	252.39	1.67	1.48	1.05	-0.53	-0.20	Covered/w/another[1714]
YER090W	TRP2	"Anthranilate synthase, catalyzes the initial step of tryptophan biosynthesis, forms multifunctional hetero-oligomeric anthranilate synthase:indole-3-glycerol phosphate synthase enzyme complex with Trp3p"	Verified	chr5:337945-339468	337945-339468	98.9%	361.67	437.32	352.38	378.92	176.52	189.13	399.49	365.65	182.82	1.47	1.48	0.76	-1.00	-0.32	Frag>80[1715,1716]
YER090C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr5:338318-338407	338318-338407	99.2%	179.19	291.18	302.38	302.38	89.59	156.79	235.18	302.38	123.19	0.87	1.23	0.51	-1.30	NaN	Covered/w/another[1715]
YER091C	MET6	"Cobalamin-independent methionine synthase, involved in amino acid biosynthesis; requires a minimum of two glutamates on the methyltetrahydrofolate substrate, similar to bacterial metE homologs"	Verified	chr5:339860-342163	339860-342163	98.8%	297.48	604.19	528.61	322.09	80.85	60.64	450.83	425.35	70.74	1.66	1.73	0.29	-2.59	-1.87	Matched[1717]
YER091C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr5:342386-342607	342386-342607	98.7%	0.00	9.13	4.56	0.00	13.69	9.13	4.56	2.28	11.41	0.02	0.01	0.05	2.32	0.47	Overlap[1717]
YER092W	IES5	Protein that associates with the INO80 chromatin remodeling complex under low-salt conditions	Verified	chr5:342851-343228	342851-343228	98.5%	290.19	276.76	225.71	225.71	241.83	231.08	283.48	225.71	236.45	1.05	0.92	0.98	0.07	0.03	Matched[1718]
YER093C	TSC11	"Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p), a membrane-associated complex that regulates actin cytoskeletal dynamics during polarized growth and cell wall integrity; involved in sphingolipid metabolism; contains a RasGEFN domain"	Verified	chr5:343316-347608	343316-347608	99.2%	61.98	62.69	50.48	43.20	40.85	45.78	62.33	46.84	43.32	0.23	0.19	0.18	-0.11	0.38	Matched[1719]
YER093C-A		Putative protein of unknown function; YER093C-A contains an intron	Uncharacterized	chr5:347908-348396	347908-348197,348273-348396	98.8%	88.06	95.39	119.85	129.64	139.42	83.16	91.72	124.75	111.29	0.34	0.51	0.46	-0.16	0.04	Matched[1720]
YER094C	PUP3	Beta subunit of the 20S proteasome involved in ubiquitin-dependent catabolism; human homolog is subunit C10	Verified	chr5:348725-349342	348725-349342	98.8%	1034.65	828.38	936.43	767.80	1717.33	800.55	931.51	852.11	1258.94	3.44	3.46	5.22	0.56	0.37	Frag>80[1721,1722]
YER095W	RAD51	"Strand exchange protein, forms a helical filament with DNA that searches for homology; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; homolog of Dmc1p and bacterial RecA protein"	Verified	chr5:349976-351178	349976-351178	98.2%	187.97	188.82	220.99	192.20	264.17	235.39	188.39	206.60	249.78	0.70	0.84	1.03	0.27	0.54	Frag>80[1723,1724]
YER096W	SHC1	"Sporulation-specific activator of Chs3p (chitin synthase III), required for the synthesis of the chitosan layer of ascospores; has similarity to Skt5p, which activates Chs3p during vegetative growth; transcriptionally induced at alkaline pH"	Verified	chr5:351694-353232	351694-353232	98.7%	16.45	6.58	11.85	10.53	63.18	49.36	11.52	11.19	56.27	0.04	0.05	0.23	2.33	2.68	Matched[1725]
YER097W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr5:355136-355465	355136-355465	99.1%	3.06	15.29	6.12	6.12	30.58	24.46	9.17	6.12	27.52	0.03	0.02	0.11	2.17	1.55	Overlap[1726]
YER098W	UBP9	"Ubiquitin carboxyl-terminal hydrolase, ubiquitin-specific protease that cleaves ubiquitin-protein fusions"	Verified	chr5:355462-357726	355462-357726	98.7%	77.38	89.91	68.88	75.15	162.37	167.74	83.64	72.01	165.05	0.31	0.29	0.68	1.20	1.03	Covered/w/another[1726]
YER099C	PRS2	"5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of five related enzymes, which are active as heteromultimeric complexes"	Verified	chr5:358101-359057	358101-359057	98.8%	191.42	227.37	188.24	151.23	191.42	141.71	209.39	169.74	166.56	0.77	0.69	0.69	-0.03	0.16	Covered/w/another[1726]
YER100W	UBC6	Ubiquitin-conjugating enzyme involved in ER-associated protein degradation; located at the cytosolic side of the ER membrane; tail region contains a transmembrane segment at the C-terminus; substrate of the ubiquitin-proteasome pathway	Verified	chr5:359558-360310	359558-360310	98.5%	373.32	446.09	378.71	327.49	436.66	361.19	409.70	353.10	398.92	1.51	1.43	1.65	0.18	0.41	Covered/w/another[1726]
YER101C	AST2	"Protein that may have a role in targeting of plasma membrane [H+]ATPase (Pma1p) to the plasma membrane, as suggested by analysis of genetic interactions"	Verified	chr5:360498-361790	360498-361790	99.2%	68.60	84.97	67.04	45.21	99.78	95.10	76.78	56.13	97.44	0.28	0.23	0.40	0.80	1.16	Covered/w/another[1726]
YER102W	RPS8B	Protein component of the small (40S) ribosomal subunit; identical to Rps8Ap and has similarity to rat S8 ribosomal protein	Verified	chr5:362728-363698	362728-362729,363089-363698	20.5%	6639.66	4694.79	5563.60	4495.52	1115.91	828.96	5667.22	5029.56	972.43	20.92	20.42	4.03	-2.37	-3.22	Frag<80[1727,1728]
YER103W	SSA4	Heat shock protein that is highly induced upon stress; plays a role in SRP-dependent cotranslational protein-membrane targeting and translocation; member of the HSP70 family; cytoplasmic protein that concentrates in nuclei upon starvation	Verified	chr5:364585-366513	364585-366513	97.9%	155.21	274.93	191.23	155.21	36221.43	25410.67	215.07	173.22	30816.05	0.79	0.70	127.68	7.47	5.45	Matched[1730]
YER104W	RTT105	Protein with a role in regulation of Ty1 transposition	Verified	chr5:366798-367424	366798-367424	98.5%	51.84	68.03	69.65	50.22	27.54	34.02	59.94	59.94	30.78	0.22	0.24	0.13	-0.96	0.07	Matched[1731]
YER105C	NUP157	"Abundant subunit of the nuclear pore complex (NPC), present on both sides of the NPC, has similarity to Nup170p"	Verified	chr5:367834-372009	367834-372009	99.1%	159.95	131.68	128.79	116.46	86.50	119.85	145.82	122.62	103.17	0.54	0.50	0.43	-0.25	0.16	Matched[1732]
YER106W	MAM1	"Monopolin, kinetochore associated protein involved in chromosome attachment to meiotic spindle"	Verified	chr5:372322-373230	372322-373230	98.7%	5.57	12.26	8.91	3.34	10.03	4.46	8.91	6.13	7.24	0.03	0.02	0.03	0.24	0.04	Frag<80[1733]
YER107W-A		"Dubious open reading frame unlikely to encode a protein, partially overlaps verified ORF GLE2/YER107C"	Dubious	chr5:374390-374710	374390-374710	99.2%	191.52	178.96	163.27	150.71	103.61	109.89	185.24	156.99	106.75	0.68	0.64	0.44	-0.56	NaN	Covered/w/another[1734]
YER107C	GLE2	"Component of the nuclear pore complex required for polyadenylated RNA export but not for protein import, homologous to S. pombe Rae1p"	Verified	chr5:373444-374541	373444-374541	99.1%	225.21	191.20	238.08	178.33	165.46	99.28	208.20	208.20	132.37	0.77	0.85	0.55	-0.65	-0.49	Frag>80[1733,1734]
YER109C	FLO8	"Transcription factor required for flocculation, diploid filamentous growth, and haploid invasive growth; genome reference strain S288C and most laboratory strains have a mutation in this gene"	Verified	chr5:375211-377610	375211-377610	98.5%	106.18	107.03	90.53	79.53	55.00	46.11	106.61	85.03	50.55	0.39	0.35	0.21	-0.75	-0.09	Matched[1735]
YER110C	KAP123	"Karyopherin beta, mediates nuclear import of ribosomal proteins prior to assembly into ribosomes and import of histones H3 and H4; localizes to the nuclear pore, nucleus, and cytoplasm; exhibits genetic interactions with RAI1"	Verified	chr5:378758-382099	378758-382099	98.9%	422.57	197.52	292.50	257.11	34.79	30.55	310.05	274.81	32.67	1.14	1.12	0.14	-3.07	-1.88	Matched[1737]
YER111C	SWI4	"DNA binding component of the SBF complex (Swi4p-Swi6p), a transcriptional activator that in concert with MBF (Mbp1-Swi6p) regulates late G1-specific transcription of targets including cyclins and genes required for DNA synthesis and repair"	Verified	chr5:382591-385872	382591-385872	99.2%	112.67	105.00	95.48	101.00	107.14	120.96	108.83	98.24	114.05	0.40	0.40	0.47	0.22	0.62	Matched[1738]
YER112W	LSM4	"Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA"	Verified	chr5:387228-387791	387228-387791	98.8%	373.23	348.11	364.26	369.64	321.20	224.30	360.67	366.95	272.75	1.33	1.49	1.13	-0.43	-0.55	Covered/w/another[1739]
YER113C		"Non-essential golgi localized protein of unknown function; contains niine potential transmembrane domains and has similarity to the endosomal protein, Emp70p"	Uncharacterized	chr5:387928-390048	387928-390048	99.2%	137.41	142.16	135.03	109.83	103.65	98.89	139.78	122.43	101.27	0.52	0.50	0.42	-0.27	-0.37	Covered/w/another[1739]
YER114C	BOI2	"Protein implicated in polar growth, functionally redundant with Boi1p; interacts with bud-emergence protein Bem1p; contains an SH3 (src homology 3) domain and a PH (pleckstrin homology) domain"	Verified	chr5:390586-393708	390586-393708	98.9%	134.01	116.53	98.08	90.96	65.06	70.57	125.27	94.52	67.82	0.46	0.38	0.28	-0.48	0.12	Covered/w/another[1739]
YER115C	SPR6	"Protein of unknown function, expressed during sporulation; not required for sporulation, but gene exhibits genetic interactions with other genes required for sporulation"	Verified	chr5:394288-394863	394288-394863	98.8%	228.32	272.23	168.61	151.04	170.36	119.43	250.27	159.82	144.90	0.92	0.65	0.60	-0.14	0.13	Covered/w/another[1740]
YER116C	SLX8	Subunit of the Slx5-Slx8 substrate-specific ubiquitin ligase complex; stimulated by prior attachment of SUMO to the substrate	Verified	chr5:395344-396168	395344-396168	99.1%	122.27	133.27	88.03	83.14	152.84	112.49	127.77	85.59	132.66	0.47	0.35	0.55	0.63	1.10	Covered/w/another[1740]
YER117W	RPL23B	"Protein component of the large (60S) ribosomal subunit, identical to Rpl23Ap and has similarity to E. coli L14 and rat L23 ribosomal proteins"	Verified	chr5:396765-397649	396765-396806,397278-397649	58.1%	8366.97	6057.12	7295.14	5616.76	2093.82	1512.20	7212.05	6455.95	1803.01	26.62	26.21	7.47	-1.84	-2.30	Matched[1741]
YER118C	SHO1	"Transmembrane osmosensor, participates in activation of both the Cdc42p- and MAP kinase-dependent filamentous growth pathway and the high-osmolarity glycerol response pathway"	Verified	chr5:397948-399051	397948-399051	99.0%	295.62	217.82	264.50	203.18	98.84	56.74	256.72	233.84	77.79	0.95	0.95	0.32	-1.59	-1.48	Matched[1742]
YER119C	AVT6	"Vacuolar amino acid transporter, exports aspartate and glutamate from the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters"	Verified	chr5:399492-400838	399492-400838	98.5%	158.26	204.23	196.69	168.81	371.53	311.99	181.24	182.75	341.76	0.67	0.74	1.42	0.90	1.30	Matched[1743]
YER120W	SCS2	"Integral ER membrane protein that regulates phospholipid metabolism via an interaction with the FFAT motif of Opi1p, also involved in telomeric silencing, disruption causes inositol auxotrophy above 34 degrees C, VAP homolog"	Verified	chr5:401131-401865	401131-401865	98.5%	1106.35	1167.13	1135.36	1048.34	888.12	776.24	1136.74	1091.85	832.18	4.20	4.43	3.45	-0.39	-0.32	Matched[1744]
YER119C-A		"Dubious open reading frame, not conserved in closely related Saccharomyces species; deletion mutation blocks replication of Brome mosaic virus in S. cerevisiae, but this is likely due to effects on the overlapping gene SCS2"	Dubious	chr5:400863-401234	400863-401234	99.2%	276.49	257.51	346.96	230.40	233.11	216.85	267.00	288.68	224.98	0.99	1.17	0.93	-0.36	0.69	Frag<80[1744]
YER121W		Putative protein of unknown function; may be involved in phosphatase regulation and/or generation of precursor metabolites and energy	Uncharacterized	chr5:402371-402715	402371-402715	98.6%	32.35	41.17	67.64	41.17	1388.07	814.61	36.76	54.41	1101.34	0.14	0.22	4.56	4.34	2.00	Matched[1746]
YER122C	GLO3	"ADP-ribosylation factor GTPase activating protein (ARF GAP), involved in ER-Golgi transport; shares functional similarity with Gcs1p"	Verified	chr5:402867-404348	402867-404348	99.2%	777.71	672.92	645.71	647.07	531.40	529.36	725.31	646.39	530.38	2.68	2.62	2.20	-0.29	0.09	Matched[1747]
YER123W	YCK3	"Palmitoylated, vacuolar membrane-localized casein kinase I isoform; negatively regulates vacuole fusion during hypertonic stress via phosphorylation of the HOPS complex subunit, Vps41p; shares overlapping essential functions with Hrr25p"	Verified	chr5:404809-406383	404809-406383	98.8%	172.23	180.59	145.88	176.73	110.54	104.11	176.41	161.31	107.32	0.65	0.65	0.44	-0.59	-0.10	Matched[1748]
YER124C	DSE1	"Daughter cell-specific protein, may participate in pathways regulating cell wall metabolism; deletion affects cell separation after division and sensitivity to drugs targeted against the cell wall"	Verified	chr5:407338-409059	407338-409059	99.3%	494.88	529.39	407.14	323.49	372.04	190.70	512.14	365.31	281.37	1.89	1.48	1.17	-0.38	-0.38	Matched[1749]
YER125W	RSP5	"Ubiquitin-protein ligase involved in ubiquitin-mediated protein degradation; functions in multivesicular body sorting, heat shock response and ubiquitylation of arrested RNAPII; contains a hect (homologous to E6-AP carboxyl terminus) domain"	Verified	chr5:410185-412614	410185-412614	98.7%	431.45	411.86	473.56	463.97	342.24	327.65	421.66	468.76	334.95	1.56	1.90	1.39	-0.48	-0.00	Matched[1750]
YER126C	NSA2	"Protein constituent of 66S pre-ribosomal particles, contributes to processing of the 27S pre-rRNA"	Verified	chr5:413390-414175	413390-414175	99.3%	504.70	257.47	324.08	275.41	37.15	30.74	381.08	299.74	33.95	1.41	1.22	0.14	-3.14	-3.94	Matched[1752]
YER127W	LCP5	Essential protein involved in maturation of 18S rRNA; depletion leads to inhibited pre-rRNA processing and reduced polysome levels; localizes primarily to the nucleolus	Verified	chr5:414477-415550	414477-415550	98.2%	161.24	139.42	105.28	110.02	21.81	12.33	150.33	107.65	17.07	0.55	0.44	0.07	-2.66	-3.17	Covered/w/another[1753]
YER128W		Putative protein of unknown function	Uncharacterized	chr5:415855-416466	415855-416466	98.6%	66.29	107.72	69.60	64.63	69.60	48.06	87.00	67.12	58.83	0.32	0.27	0.24	-0.19	0.85	Covered/w/another[1753]
YER129W	SAK1	"Upstream serine/threonine kinase for the SNF1 complex; partially redundant with Elm1p and Tos3p; members of this family have functional orthology with LKB1, a mammalian kinase associated with Peutz-Jeghers cancer-susceptibility syndrome"	Verified	chr5:417277-420705	417277-420705	98.7%	168.64	158.01	127.89	95.40	72.66	73.84	163.33	111.64	73.25	0.60	0.45	0.30	-0.61	0.28	Covered/w/another[1753]
YER130C		Hypothetical protein	Uncharacterized	chr5:421111-422442	421111-422442	99.1%	138.62	112.86	90.90	71.20	109.08	71.20	125.74	81.05	90.14	0.46	0.33	0.37	0.15	0.32	Covered/w/another[1753]
YER131W	RPS26B	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps26Ap and has similarity to rat S26 ribosomal protein	Verified	chr5:423586-424307	423586-423587,423948-424307	71.1%	8208.58	6241.94	6906.56	5779.43	742.35	202.11	7225.26	6343.00	472.23	26.67	25.75	1.96	-3.75	-5.03	Matched[1754]
YER132C	PMD1	"Protein with an N-terminal kelch-like domain, putative negative regulator of early meiotic gene expression; required, with Mds3p, for growth under alkaline conditions"	Verified	chr5:425184-430445	425184-430445	98.9%	70.15	65.72	48.62	36.13	22.87	38.24	67.94	42.38	30.56	0.25	0.17	0.13	-0.47	-0.01	Frag<80[1755,1756]
YER133W	GLC7	"Catalytic subunit of type 1 serine/threonine protein phosphatase, involved in many processes including glycogen metabolism, sporulation, and mitosis; interacts with multiple regulatory subunits; predominantly isolated with Sds22p"	Verified	chr5:432491-433954	432491-432667,433193-433954	98.8%	1564.87	1547.62	1479.73	1577.80	2774.08	1752.39	1556.24	1528.76	2263.24	5.74	6.21	9.38	0.57	-0.96	Frag>80[1758,1759,1760,1761]
YER133W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized gene YER134C."	Dubious	chr5:437187-437528	437187-437528	99.4%	303.05	305.99	261.86	332.48	714.97	423.69	304.52	297.17	569.33	1.12	1.21	2.36	0.94	NaN	Matched[1764]
YER134C		Putative protein of unknown function; non-essential gene	Uncharacterized	chr5:437263-437799	437263-437799	99.0%	240.68	304.61	242.56	297.09	565.97	398.62	272.64	269.82	482.29	1.01	1.10	2.00	0.84	0.98	Frag>80[1764,1765]
YER135C		Dubious open reading frame unlikely to encode a protein; YER135C is not an essential gene	Dubious	chr5:437948-438340	437948-438340	99.2%	2.57	0.00	5.13	0.00	17.96	20.53	1.28	2.57	19.25	0.00	0.01	0.08	2.91	0.63	Frag<80[1765]
YER136W	GDI1	"GDP dissociation inhibitor, regulates vesicle traffic in secretory pathways by regulating the dissociation of GDP from the Sec4/Ypt/rab family of GTP binding proteins"	Verified	chr5:439612-440967	439612-440967	98.9%	737.51	640.57	756.15	760.63	864.28	602.54	689.04	758.39	733.41	2.54	3.08	3.04	-0.05	0.28	Matched[1766]
YER137W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr5:441571-441876	441571-441876	99.6%	29.54	32.82	22.97	6.56	6.56	6.56	31.18	14.77	6.56	0.12	0.06	0.03	-1.17	NaN	Matched[1767]
YER137C		Putative protein of unknown function	Uncharacterized	chr5:441369-441815	441369-441815	99.5%	17.99	33.74	29.24	11.25	13.50	11.25	25.87	20.24	12.37	0.10	0.08	0.05	-0.71	-0.54	Matched[1767]
YER138W-A		Putative protein of unknown function	Uncharacterized	chr5:449470-449574	449470-449574	5.9%	161.07	161.07	0.00	0.00	0.00	161.07	161.07	0.00	80.54	0.59	0.00	0.33	Inf	-0.55	Matched[1770]
YER139C		Putative protein of unknown function; YER139C has been shown to be required for growth at high temperatures; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr5:450558-451238	450558-451238	99.4%	82.74	78.31	79.78	81.26	125.58	97.51	80.52	80.52	111.55	0.30	0.33	0.46	0.47	0.70	Matched[1771]
YER140W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr5:451560-453230	451560-453230	98.8%	66.04	74.52	49.08	45.44	33.93	33.32	70.28	47.26	33.63	0.26	0.19	0.14	-0.49	-0.78	Matched[1772]
YER141W	COX15	"Protein required for the hydroxylation of heme O to form heme A, which is an essential prosthetic group for cytochrome c oxidase"	Verified	chr5:453454-454914	453454-454914	98.7%	488.75	734.16	605.22	653.75	881.13	743.87	611.46	629.48	812.50	2.26	2.56	3.37	0.37	0.64	Matched[1773]
YER142C	MAG1	3-methyl-adenine DNA glycosylase involved in protecting DNA against alkylating agents; initiates base excision repair by removing damaged bases to create abasic sites that are subsequently repaired	Verified	chr5:455141-456031	455141-456031	99.3%	106.26	84.79	119.83	106.26	482.71	264.53	95.53	113.05	373.62	0.35	0.46	1.55	1.72	0.79	Matched[1774]
YER143W	DDI1	"DNA damage-inducible v-SNARE binding protein, contains a ubiquitin-associated (UBA) domain, may act as a negative regulator of constitutive exocytosis, may play a role in S-phase checkpoint control"	Verified	chr5:456314-457600	456314-457600	98.7%	122.04	111.80	147.23	120.46	273.21	197.62	116.92	133.85	235.42	0.43	0.54	0.98	0.81	1.11	Matched[1775]
YER144C	UBP5	"Putative ubiquitin-specific protease, closest paralog of Doa4p but has no functional overlap; concentrates at the bud neck"	Verified	chr5:457801-460218	457801-460218	98.9%	74.88	63.59	61.49	44.34	97.05	75.30	69.23	52.92	86.17	0.26	0.21	0.36	0.70	0.48	Matched[1776]
YER145C	FTR1	High affinity iron permease involved in the transport of iron across the plasma membrane; forms complex with Fet3p; expression is regulated by iron	Verified	chr5:460521-461735	460521-461735	98.7%	808.06	441.14	582.07	397.78	247.67	124.25	624.60	489.92	185.96	2.31	1.99	0.77	-1.40	-0.95	Frag>80[1777,1778]
YER146W	LSM5	"Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA"	Verified	chr5:462580-462861	462580-462861	98.2%	790.85	631.96	657.24	639.18	859.46	422.51	711.41	648.21	640.99	2.63	2.63	2.66	-0.02	-0.74	Matched[1779]
YER145C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified ORF LSM5/YER146W"	Dubious	chr5:462381-462818	462381-462818	98.2%	446.30	364.94	423.05	385.86	543.92	248.72	405.62	404.46	396.32	1.50	1.64	1.64	-0.03	NaN	Matched[1779]
YER147C	SCC4	"Subunit of cohesin loading factor (Scc2p-Scc4p), a complex required for the loading of cohesin complexes onto chromosomes; involved in establishing sister chromatid cohesion during double-strand break repair via phosphorylated histone H2AX"	Verified	chr5:462963-464837	462963-464837	99.0%	74.87	60.33	54.40	41.47	43.63	23.16	67.60	47.94	33.40	0.25	0.19	0.14	-0.52	-0.28	Matched[1780]
YER148W	SPT15	"TATA-binding protein, general transcription factor that interacts with other factors to form the preinitiation complex at promoters, essential for viability"	Verified	chr5:465298-466020	465298-466020	98.6%	927.39	700.11	796.91	711.33	548.58	404.07	813.75	754.12	476.32	3.00	3.06	1.97	-0.66	-0.46	Matched[1781]
YER147C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr5:465198-465608	465198-465608	98.5%	718.74	597.72	644.64	600.19	466.81	328.50	658.23	622.41	397.65	2.43	2.53	1.65	-0.65	NaN	Matched[1781]
YER148W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr5:466180-466758	466180-466758	99.1%	128.99	115.05	130.74	85.42	144.68	74.96	122.02	108.08	109.82	0.45	0.44	0.46	0.02	NaN	Covered/w/another[1782]
YER149C	PEA2	"Coiled-coil polarisome protein required for polarized morphogenesis, cell fusion, and low affinity Ca2+ influx; forms polarisome complex with Bni1p, Bud6p, and Spa2p; localizes to sites of polarized growth"	Verified	chr5:466203-467465	466203-467465	99.0%	110.37	92.77	106.37	68.78	119.16	65.58	101.57	87.57	92.37	0.37	0.36	0.38	0.08	0.31	Matched[1782]
YER150W	SPI1	"GPI-anchored, serine/threonine rich cell wall protein of unknown function; basal expression requires Msn2p/Msn4p; expression is induced under conditions of stress and during the diauxic shift; similar to Sed1p"	Verified	chr5:468365-468811	468365-468811	99.0%	36.15	198.81	106.18	106.18	7846.37	6994.63	117.48	106.18	7420.50	0.43	0.43	30.75	6.13	4.09	Matched[1784]
YER151C	UBP3	Ubiquitin-specific protease that interacts with Bre5p to co-regulate anterograde and retrograde transport between endoplasmic reticulum and Golgi compartments; inhibitor of gene silencing; cleaves ubiquitin fusions but not polyubiquitin	Verified	chr5:469681-472419	469681-472419	99.0%	239.69	219.41	193.23	185.49	198.39	217.57	229.55	189.36	207.98	0.85	0.77	0.86	0.14	0.43	Covered/w/another[1786]
YER152W-A		"Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr5:473480-474046	473480-474046	98.8%	196.43	166.07	189.29	142.86	167.86	146.43	181.25	166.07	157.14	0.67	0.67	0.65	-0.08	NaN	Covered/w/another[1786]
YER152C		Putative protein of unknown function; shares amino acid similarity with the aminotransferases Aro8p and Aro9p; YER152C is not an essential gene	Uncharacterized	chr5:472652-473983	472652-473983	98.6%	230.03	247.55	191.95	187.38	254.40	171.38	238.79	189.66	212.89	0.88	0.77	0.88	0.17	0.24	Covered/w/another[1786]
YER153C	PET122	"Mitochondrial translational activator specific for the COX3 mRNA, acts together with Pet54p and Pet494p; located in the mitochondrial inner membrane"	Verified	chr5:474036-474800	474036-474800	98.3%	71.78	81.09	58.49	37.22	42.54	23.93	76.44	47.86	33.23	0.28	0.19	0.14	-0.53	-0.35	Covered/w/another[1786]
YER154W	OXA1	"Mitochondrial inner membrane insertase, mediates the insertion of both mitochondrial- and nuclear-encoded proteins from the matrix into the inner membrane, interacts with mitochondrial ribosomes; conserved from bacteria to animals"	Verified	chr5:475015-476223	475015-476223	98.9%	334.68	332.17	357.27	310.42	273.60	192.44	333.43	333.84	233.02	1.23	1.36	0.97	-0.52	-0.21	Matched[1787]
YER155C	BEM2	Rho GTPase activating protein (RhoGAP) involved in the control of cytoskeleton organization and cellular morphogenesis; required for bud emergence	Verified	chr5:476340-482843	476340-482843	99.1%	201.20	226.49	177.00	172.66	98.82	135.27	213.85	174.83	117.05	0.79	0.71	0.48	-0.58	-0.16	Frag>80[1788,1789,1790]
YER156C		Putative protein of unknown function; identified as interacting with Hsp82p in a high-throughput two-hybrid screen; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus	Uncharacterized	chr5:483320-484336	483320-484336	98.9%	579.81	404.77	544.01	438.59	123.32	43.76	492.29	491.30	83.54	1.82	1.99	0.35	-2.56	-2.26	Frag>80[1790,1791]
YER157W	COG3	"Essential component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering complex that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments"	Verified	chr5:484783-487188	484783-487188	99.0%	99.05	110.38	87.72	82.68	114.16	94.01	104.72	85.20	104.09	0.39	0.35	0.43	0.29	0.56	Matched[1792]
YER158C		"Protein of unknown function, has similarity to Afr1p; potentially phosphorylated by Cdc28p"	Uncharacterized	chr5:488852-490573	488852-490573	96.9%	80.30	145.63	80.30	73.71	134.84	129.44	112.96	77.01	132.14	0.42	0.31	0.55	0.78	1.18	Covered[1794]
YER158W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr5:491482-491697	491482-491697	99.5%	898.20	893.54	795.81	772.54	944.74	414.19	895.87	784.18	679.46	3.31	3.18	2.82	-0.21	NaN	Matched[1795]
YER159C	BUR6	Subunit of a heterodimeric NC2 transcription regulator complex with Ncb2p; complex binds to TBP and can repress transcription by preventing preinitiation complex assembly or stimulate activated transcription; homologous to human NC2alpha	Verified	chr5:491525-491953	491525-491953	99.2%	925.61	925.61	791.70	836.34	977.29	512.14	925.61	814.02	744.71	3.42	3.30	3.09	-0.13	-0.41	Frag>80[1795,1796,1797]
YER161C	SPT2	"Protein involved in negative regulation of transcription; required for RNA polyadenylation; exhibits regulated interactions with both histones and SWI-SNF components, has similarity to mammalian HMG1 proteins"	Verified	chr5:499342-500343	499342-500343	99.4%	233.05	267.20	239.08	222.00	199.90	145.66	250.13	230.54	172.78	0.92	0.94	0.72	-0.42	0.02	Matched[1800]
YER162C	RAD4	Protein that recognizes and binds damaged DNA (with Rad23p) during nucleotide excision repair; subunit of Nuclear Excision Repair Factor 2 (NEF2); homolog of human XPC protein	Verified	chr5:500625-502889	500625-502889	99.4%	53.29	51.07	60.39	54.18	83.93	80.37	52.18	57.28	82.15	0.19	0.23	0.34	0.52	0.97	Matched[1801]
YER163C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus	Uncharacterized	chr5:503079-503777	503079-503777	98.9%	136.00	192.43	167.83	143.24	554.14	329.88	164.22	155.53	442.01	0.61	0.63	1.83	1.51	1.59	Frag>80[1802,1803]
YER164W	CHD1	"Nucleosome remodeling factor that functions in regulation of transcription elongation; contains a chromo domain, a helicase domain and a DNA-binding domain; component of both the SAGA and SILK complexes"	Verified	chr5:505387-509793	505387-509793	98.4%	170.39	158.17	148.95	125.20	55.80	68.02	164.28	137.07	61.91	0.61	0.56	0.26	-1.15	-0.37	Matched[1805]
YER165W	PAB1	"Poly(A) binding protein, part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G"	Verified	chr5:510368-512101	510368-512101	98.7%	3003.95	2545.08	2828.58	2736.81	648.84	871.55	2774.51	2782.70	760.19	10.24	11.30	3.15	-1.87	-1.75	Matched[1807]
YER166W	DNF1	"Aminophospholipid translocase (flippase) that localizes primarily to the plasma membrane; contributes to endocytosis, protein transport and cell polarity; type 4 P-type ATPase"	Verified	chr5:512739-517454	512739-517454	98.7%	154.69	172.95	135.35	131.92	82.93	101.41	163.82	133.63	92.17	0.60	0.54	0.38	-0.54	0.18	Covered/w/another[1808]
YER165C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene DNF1/YER166W"	Dubious	chr5:512622-512978	512622-512978	98.7%	62.43	82.29	36.89	76.61	39.73	85.13	72.36	56.75	62.43	0.27	0.23	0.26	0.14	NaN	Covered/w/another[1808]
YER167W	BCK2	"Protein rich in serine and threonine residues involved in protein kinase C signaling pathway, which controls cell integrity; overproduction suppresses pkc1 mutations"	Verified	chr5:518211-520766	518211-520766	98.9%	147.62	157.91	145.64	154.75	131.00	131.00	152.77	150.20	131.00	0.56	0.61	0.54	-0.20	0.41	Covered/w/another[1808]
YER168C	CCA1	"ATP (CTP):tRNA-specific tRNA nucleotidyltransferase; different forms targeted to the nucleus, cytosol, and mitochondrion are generated via the use of multiple transcriptional and translational start sites"	Verified	chr5:521024-522664	521024-522664	99.2%	151.15	119.20	112.44	86.64	80.49	58.37	135.18	99.54	69.43	0.50	0.40	0.29	-0.52	-0.38	Covered/w/another[1808]
YER169W	RPH1	JmjC domain-containing histone demethylase which can specifically demethylate H3K36 tri- and dimethyl modification states; transcriptional repressor of PHR1; Rph1p phosphorylation during DNA damage is under control of the MEC1-RAD53 pathway	Verified	chr5:523364-525754	523364-525754	98.8%	95.69	115.17	76.21	69.86	135.92	129.99	105.43	73.04	132.95	0.39	0.30	0.55	0.86	1.45	Covered/w/another[1809]
YER170W	ADK2	"Mitochondrial adenylate kinase, catalyzes the reversible synthesis of GTP and AMP from GDP and ADP; may serve as a back-up for synthesizing GTP or ADP depending on metabolic conditions; 3' sequence of ADK2 varies with strain background"	Verified	chr5:525969-526646	525969-526646	98.6%	122.60	110.64	116.62	133.07	128.58	80.74	116.62	124.84	104.66	0.43	0.51	0.43	-0.25	0.05	Covered/w/another[1809]
YER171W	RAD3	"5' to 3' DNA helicase, involved in nucleotide excision repair and transcription; subunit of RNA polymerase II transcription initiation factor TFIIH; subunit of Nucleotide Excision Repair Factor 3 (NEF3); homolog of human XPD protein"	Verified	chr5:527077-529413	527077-529413	98.8%	138.22	124.35	94.02	92.72	50.69	30.76	131.28	93.37	40.73	0.48	0.38	0.17	-1.20	-0.60	Covered/w/another[1809]
YER172C	BRR2	RNA-dependent ATPase RNA helicase (DEIH box); required for disruption of U4/U6 base-pairing in native snRNPs to activate the spliceosome for catalysis; homologous to human U5-200kD	Verified	chr5:529525-536016	529525-536016	99.2%	72.34	63.49	60.69	50.60	29.96	40.20	67.91	55.65	35.08	0.25	0.23	0.15	-0.67	-0.14	Covered/w/another[1809]
YER173W	RAD24	"Checkpoint protein, involved in the activation of the DNA damage and meiotic pachytene checkpoints; subunit of a clamp loader that loads Rad17p-Mec3p-Ddc1p onto DNA; homolog of human and S. pombe Rad17 protein"	Verified	chr5:536295-538274	536295-538274	98.7%	72.12	68.54	59.85	48.59	35.29	18.41	70.33	54.22	26.85	0.26	0.22	0.11	-1.01	-0.37	Matched[1810]
YER172C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr5:536270-536650	536270-536650	98.8%	37.21	42.52	34.55	50.49	29.23	13.29	39.86	42.52	21.26	0.15	0.17	0.09	-1.00	NaN	Covered/w/another[1810]
YER174C	GRX4	Hydroperoxide and superoxide-radical responsive glutathione-dependent oxidoreductase; monothiol glutaredoxin subfamily member along with Grx3p and Grx5p; protects cells from oxidative damage	Verified	chr5:538429-539163	538429-539163	99.0%	211.54	251.37	217.03	244.51	162.09	114.01	231.46	230.77	138.05	0.85	0.94	0.57	-0.74	-1.23	Covered/w/another[1811]
YER175C	TMT1	"Trans-aconitate methyltransferase, cytosolic enzyme that catalyzes the methyl esterification of 3-isopropylmalate, an intermediate of the leucine biosynthetic pathway, and trans-aconitate, which inhibits the citric acid cycle"	Verified	chr5:539459-540358	539459-540358	99.1%	72.90	190.66	96.45	97.57	182.81	191.78	131.78	97.01	187.30	0.49	0.39	0.78	0.95	1.46	Covered/w/another[1811]
YER175W-A		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr5:540645-540809	540645-540809	98.9%	61.30	73.56	85.82	42.91	55.17	24.52	67.43	64.37	39.85	0.25	0.26	0.17	-0.69	NaN	Covered/w/another[1811]
YER176W	ECM32	"DNA dependent ATPase/DNA helicase belonging to the Dna2p- and Nam7p-like family of helicases that is involved in modulating translation termination; interacts with the translation termination factors, localized to polysomes"	Verified	chr5:541685-545050	541685-545050	98.5%	150.57	133.07	109.54	97.16	85.09	91.73	141.82	103.35	88.41	0.52	0.42	0.37	-0.23	-0.12	Matched[1812]
YER177W	BMH1	"14-3-3 protein, major isoform; controls proteome at post-transcriptional level, binds proteins and DNA, involved in regulation of many processes including exocytosis, vesicle transport, Ras/MAPK signaling, and rapamycin-sensitive signaling"	Verified	chr5:545606-546409	545606-546409	93.9%	8058.72	9834.98	7569.95	7277.22	13101.38	9988.63	8946.85	7423.59	11545.01	33.03	30.13	47.83	0.64	0.30	Matched[1813]
YER178W	PDA1	"E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex, catalyzes the direct oxidative decarboxylation of pyruvate to acetyl-CoA; phosphorylated; regulated by glucose"	Verified	chr5:546812-548074	546812-548074	98.6%	1804.54	2115.19	1866.35	1857.52	1957.86	1771.62	1959.86	1861.93	1864.74	7.23	7.56	7.73	0.00	-0.14	Matched[1814]
YER179W	DMC1	Meiosis-specific protein required for repair of double-strand breaks and pairing between homologous chromosomes; homolog of Rad51p and the bacterial RecA protein	Verified	chr5:548416-549512	548416-548547,548640-549512	98.6%	26.24	60.56	28.26	22.20	69.64	35.32	43.40	25.23	52.48	0.16	0.10	0.22	1.06	1.16	Frag>80[1815,1816]
YER180C	ISC10	"Protein required for sporulation, transcript is induced 7.5 hours after induction of meiosis, expected to play significant role in the formation of reproductive cells"	Verified	chr5:549719-550522	549719-550522	99.2%	179.23	167.95	157.92	112.80	135.36	87.73	173.59	135.36	111.55	0.64	0.55	0.46	-0.28	0.06	Matched[1817]
YER180C-A	SLO1	"Protein interacting with Arl3p, which is a GTPase of the Ras superfamily involved in vesicle-tethering at the Golgi; putative ortholog of human SCOCO"	Verified	chr5:550860-551117	550860-551117	99.4%	140.33	101.35	85.76	58.47	113.04	101.35	120.84	72.11	107.20	0.45	0.29	0.44	0.57	NaN	Covered/w/another[1817]
YER181C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative data; extensively overlaps a Ty1 LTR; protein product is detected in highly purified mitochondria in high-throughput studies"	Dubious	chr5:551468-551791	551468-551791	97.0%	0.00	0.00	0.00	0.00	12.73	0.00	0.00	0.00	6.37	0.00	0.00	0.03	Inf	1.85	
YER182W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr5:552520-553254	552520-553254	98.7%	157.17	217.83	231.62	208.18	517.00	341.91	187.50	219.90	429.46	0.69	0.89	1.78	0.97	0.83	Matched[1818]
YER183C	FAU1	"5,10-methenyltetrahydrofolate synthetase, involved in folic acid biosynthesis"	Verified	chr5:553329-553964	553329-553964	99.1%	160.32	133.33	192.06	144.44	169.84	119.05	146.83	168.25	144.44	0.54	0.68	0.60	-0.22	-0.10	Matched[1819]
YER184C		"Putative zinc cluster protein; deletion confers sensitivity to Calcufluor white, and prevents growth on glycerol or lactate as sole carbon source"	Uncharacterized	chr5:556291-558675	556291-558675	99.1%	32.57	30.03	16.49	15.23	25.80	29.61	31.30	15.86	27.70	0.12	0.06	0.11	0.80	0.65	Overlap[1820]
YER185W		"Plasma membrane protein involved in protoporphyrin uptake; similar in sequence to RSB1, which is involved in sphingoid long-chain base release"	Uncharacterized	chr5:559449-560360	559449-560360	99.1%	7.74	13.27	5.53	4.42	1.11	3.32	10.51	4.98	2.21	0.04	0.02	0.01	-1.17	-0.80	
YER186C		Putative protein of unknown function	Uncharacterized	chr5:561700-562620	561700-562620	99.1%	256.30	284.78	248.63	210.30	143.48	81.05	270.54	229.46	112.27	1.00	0.93	0.47	-1.03	-1.14	Matched[1822]
YER187W		Putative protein of unknown function; induced in respiratory-deficient cells	Uncharacterized	chr5:566225-566650	566225-566650	98.2%	119.51	179.26	141.02	119.51	74.10	40.63	149.39	130.27	57.36	0.55	0.53	0.24	-1.18	-1.07	Matched[1823]
YER188W		Hypothetical protein	Dubious	chr5:568035-568754	568035-568754	98.6%	74.62	588.53	109.82	136.57	228.09	218.23	331.57	123.20	223.16	1.22	0.50	0.92	0.86	1.37	Matched[1825]
YER188C-A		Putative protein of unknown function	Uncharacterized	chr5:569603-569902	569603-569902	11.0%	30.30	30.30	0.00	0.00	0.00	0.00	30.30	0.00	0.00	0.11	0.00	0.00	NaN	NaN	
YER189W		Putative protein of unknown function	Uncharacterized	chr5:571150-571518	571150-571518	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.17	
YER190W	YRF1-2	"Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p"	Verified	chr5:571475-576520	571475-576520	0.2%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.20	
YER190C-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr5:574799-575374	574799-575374	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YER190C-B		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr5:575675-576157	575675-576157	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YFL068W		Putative protein of unknown function	Uncharacterized	chr6:53-535	53-535	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.44	
YFL067W		"Protein of unknown function, down-regulated at low calcium levels"	Uncharacterized	chr6:836-1363	836-1363	7.7%	0.00	0.00	73.77	73.77	24.59	73.77	0.00	73.77	49.18	0.00	0.30	0.20	-0.58	-0.03	
YFL066C		Helicase-like protein encoded within the telomeric Y' element	Uncharacterized	chr6:1437-2615	1437-2615	0.4%	0.00	377.95	188.98	0.00	377.95	188.98	188.98	94.49	283.46	0.70	0.38	1.17	1.58	0.59	Frag<80[1828]
YFL065C		Putative protein of unknown function	Uncharacterized	chr6:3030-3338	3030-3338	1.0%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	-0.12	
YFL064C		Putative protein of unknown function	Uncharacterized	chr6:3322-3846	3322-3846	0.8%	0.00	228.57	0.00	0.00	0.00	0.00	114.29	0.00	0.00	0.42	0.00	0.00	NaN	-0.25	
YFL063W		"Dubious open reading frame, based on available experimental and comparative sequence data"	Dubious	chr6:5066-5521	5066-5521	31.2%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	-0.18	
YFL062W	COS4	"Protein of unknown function, member of the DUP380 subfamily of conserved, often subtelomerically-encoded proteins"	Verified	chr6:6426-7565	6426-7565	6.0%	14.74	44.23	0.00	0.00	14.74	0.00	29.48	0.00	7.37	0.11	0.00	0.03	Inf	0.17	
YFL061W		Protein whose expression is induced by DNA damage	Uncharacterized	chr6:9545-10222	9545-10222	0.6%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.39	
YFL060C	SNO3	"Protein of unknown function, nearly identical to Sno2p; expression is induced before the diauxic shift and also in the absence of thiamin"	Verified	chr6:10301-10969	10301-10969	1.4%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.52	
YFL059W	SNZ3	"Member of a stationary phase-induced gene family; transcription of SNZ2 is induced prior to diauxic shift, and also in the absence of thiamin in a Thi2p-dependent manner; forms a coregulated gene pair with SNO3"	Verified	chr6:11363-12259	11363-12259	5.6%	119.30	0.00	59.65	39.77	39.77	0.00	59.65	49.71	19.88	0.22	0.20	0.08	-1.32	-0.14	Frag<80[1829]
YFL058W	THI5	"Protein involved in synthesis of the thiamine precursor hydroxymethylpyrimidine (HMP); member of a subtelomeric gene family including THI5, THI11, THI12, and THI13"	Verified	chr6:12929-13951	12929-13951	0.9%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.80	
YFL057C	AAD16	Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role	Verified	chr6:14305-14763	14305-14763	9.4%	93.02	162.79	116.28	139.53	69.77	23.26	127.91	127.91	46.51	0.47	0.52	0.19	-1.46	0.20	Frag<80[1830]
YFL056C	AAD6	"Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase, involved in the oxidative stress response"	Verified	chr6:14793-15431	14793-15431	77.4%	82.93	68.77	70.79	44.50	64.72	46.52	75.85	57.64	55.62	0.28	0.23	0.23	-0.05	0.19	Frag<80[1830]
YFL055W	AGP3	"Low-affinity amino acid permease, may act to supply the cell with amino acids as nitrogen source in nitrogen-poor conditions; transcription is induced under conditions of sulfur limitation"	Verified	chr6:17004-18680	17004-18680	98.8%	13.89	15.70	10.87	13.89	36.23	26.57	14.79	12.38	31.40	0.05	0.05	0.13	1.34	1.52	Matched[1832]
YFL054C		Putative channel-like protein; similar to Fps1p; mediates passive diffusion of glycerol in the presence of ethanol	Uncharacterized	chr6:20847-22787	20847-22787	99.0%	35.90	59.32	68.16	68.16	95.74	88.46	47.61	68.16	92.10	0.18	0.28	0.38	0.43	0.90	Covered/w/another[1834]
YFL053W	DAK2	"Dihydroxyacetone kinase, required for detoxification of dihydroxyacetone (DHA); involved in stress adaptation"	Verified	chr6:23423-25198	23423-25198	98.4%	10.30	15.45	18.88	19.45	28.60	64.65	12.87	19.16	46.62	0.05	0.08	0.19	1.28	0.70	Covered/w/another[1834]
YFL052W		"Putative zinc cluster protein that contains a DNA binding domain; null mutant sensitive to calcofluor white, low osmolarity and heat, suggesting a role for YFL052Wp in cell wall integrity"	Uncharacterized	chr6:28232-29629	28232-29629	98.4%	17.44	29.07	24.71	19.63	23.26	22.53	23.26	22.17	22.90	0.09	0.09	0.09	0.05	-0.02	Overlap[1835]
YFL051C		Putative protein of unknown function; YFL051C is not an essential gene	Uncharacterized	chr6:30058-30540	30058-30540	98.6%	31.49	46.18	54.57	44.08	33.58	37.78	38.83	49.33	35.68	0.14	0.20	0.15	-0.47	0.24	Covered[1835]
YFL050C	ALR2	Probable Mg(2+) transporter; overexpression confers increased tolerance to Al(3+) and Ga(3+) ions	Verified	chr6:33272-35848	33272-35848	96.1%	42.38	55.30	31.08	29.47	33.10	31.08	48.84	30.27	32.09	0.18	0.12	0.13	0.08	0.71	Matched[1836]
YFL049W	SWP82	Member of the SWI/SNF chromatin remodeling complex in which it plays an as yet unidentified role; has identifiable counterparts in closely related yeast species; abundantly expressed in many growth conditions; paralog of Npl6p	Verified	chr6:36803-38674	36803-38674	98.7%	89.82	104.43	101.19	88.20	112.01	83.87	97.13	94.69	97.94	0.36	0.38	0.41	0.05	0.27	Matched[1837]
YFL048C	EMP47	"Integral membrane component of endoplasmic reticulum-derived COPII-coated vesicles, which function in ER to Golgi transport"	Verified	chr6:38843-40180	38843-40180	99.3%	361.39	301.16	307.93	313.96	371.93	233.40	331.27	310.95	302.66	1.22	1.26	1.25	-0.04	0.36	Matched[1838]
YFL047W	RGD2	GTPase-activating protein (RhoGAP) for Cdc42p and Rho5p	Verified	chr6:40421-42565	40421-42565	98.7%	161.58	171.97	180.48	135.59	121.42	102.52	166.77	158.03	111.97	0.62	0.64	0.46	-0.50	0.11	Matched[1839]
YFL046W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr6:42815-43438	42815-43438	98.4%	192.13	275.17	205.16	156.31	345.18	180.73	233.65	180.73	262.96	0.86	0.73	1.09	0.54	-0.39	Matched[1840]
YFL045C	SEC53	"Phosphomannomutase, involved in synthesis of GDP-mannose and dolichol-phosphate-mannose; required for folding and glycosylation of secretory proteins in the ER lumen"	Verified	chr6:43628-44392	43628-44392	99.0%	2992.90	2237.41	2777.61	2592.70	1250.78	970.78	2615.16	2685.16	1110.78	9.65	10.90	4.60	-1.27	-1.80	Frag>80[1841,1842]
YFL044C	OTU1	Deubiquitylation enzyme that binds to the chaperone-ATPase Cdc48p; may contribute to regulation of protein degradation by deubiquitylating substrates that have been ubiquitylated by Ufd2p; member of the Ovarian Tumor (OTU) family	Verified	chr6:44655-45560	44655-45560	98.9%	100.40	87.02	105.98	111.56	315.72	247.66	93.71	108.77	281.69	0.35	0.44	1.17	1.37	1.98	Matched[1843]
YFL042C		Putative protein of unknown function; YFL042C is not an essential gene	Uncharacterized	chr6:45720-47744	45720-47744	99.0%	80.81	118.72	97.77	100.27	212.01	203.53	99.77	99.02	207.77	0.37	0.40	0.86	1.07	1.50	Covered/w/another[1844]
YFL041W-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr6:48734-48925	48734-48925	99.0%	42.11	105.26	36.84	47.37	110.53	73.68	73.68	42.11	92.11	0.27	0.17	0.38	1.13	NaN	Covered/w/another[1844]
YFL041W	FET5	"Multicopper oxidase, integral membrane protein with similarity to Fet3p; may have a role in iron transport"	Verified	chr6:49139-51007	49139-51007	98.7%	182.59	145.21	202.10	184.22	121.37	130.58	163.90	193.16	125.97	0.61	0.78	0.52	-0.62	-0.12	Matched[1845]
YFL040W		"Putative transporter, member of the sugar porter family; YFL040W is not an essential gene"	Uncharacterized	chr6:51350-52972	51350-52972	98.8%	17.45	10.60	18.08	13.09	21.19	9.97	14.02	15.58	15.58	0.05	0.06	0.06	0.00	-0.11	Frag<80[1846]
YFL039C	ACT1	"Actin, structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions"	Verified	chr6:53260-54695	53260-54377,54686-54695	98.5%	7987.10	7710.88	7841.34	7597.51	8078.88	7025.27	7848.99	7719.43	7552.07	28.97	31.33	31.29	-0.03	-0.46	Frag>80[1846,1847,1848,1849]
YFL038C	YPT1	"Ras-like small GTPase, involved in the ER-to-Golgi step of the secretory pathway; complex formation with the Rab escort protein Mrs6p is required for prenylation of Ypt1p by protein geranylgeranyltransferase type II (Bet2p-Bet4p)"	Verified	chr6:55365-55985	55365-55985	98.6%	1596.63	1697.84	1714.17	1568.87	2427.59	1590.10	1647.23	1641.52	2008.84	6.08	6.66	8.32	0.29	-0.21	Matched[1850]
YFL037W	TUB2	"Beta-tubulin; associates with alpha-tubulin (Tub1p and Tub3p) to form tubulin dimer, which polymerizes to form microtubules"	Verified	chr6:56335-57708	56335-57708	98.5%	1628.91	1591.97	1591.23	1517.36	1328.98	1208.57	1610.44	1554.30	1268.78	5.94	6.31	5.26	-0.29	-0.11	Matched[1851]
YFL036W	RPO41	Mitochondrial RNA polymerase; single subunit enzyme similar to those of T3 and T7 bacteriophages; requires a specificity subunit encoded by MTF1 for promoter recognition	Verified	chr6:58781-62836	58781-62836	98.8%	114.31	126.04	140.77	154.25	129.29	177.96	120.18	147.51	153.62	0.44	0.60	0.64	0.06	0.37	Frag>80[1852,1853]
YFL034C-B	MOB2	"Component of the RAM signaling network, localizes and activates the Ace2p in the daughter cell nucleus to direct daughter cell-specific transcription of several genes involved in cell separation; Mob1p-like protein"	Verified	chr6:63015-63992	63015-63858,63973-63992	98.8%	195.57	147.56	189.71	166.29	92.51	80.80	171.56	178.00	86.66	0.63	0.72	0.36	-1.04	-0.54	Matched[1854]
YFL034C-A	RPL22B	"Protein component of the large (60S) ribosomal subunit, has similarity to Rpl22Ap and to rat L22 ribosomal protein"	Verified	chr6:64242-64931	64242-64598,64920-64931	99.0%	1355.08	1147.03	1043.00	487.28	166.99	43.80	1251.06	765.14	105.40	4.62	3.11	0.44	-2.86	-2.81	Matched[1855]
YFL034W		"Putative integral membrane protein that interacts with Rpp0p, which is a component of the ribosomal stalk"	Uncharacterized	chr6:65475-68696	65475-68696	98.5%	94.23	93.91	92.02	82.88	80.36	84.77	94.07	87.45	82.57	0.35	0.35	0.34	-0.08	0.47	Matched[1856]
YFL033C	RIM15	"Glucose-repressible protein kinase involved in signal transduction during cell proliferation in response to nutrients, specifically the establishment of stationary phase; identified as a regulator of IME2; substrate of Pho80p-Pho85p kinase"	Verified	chr6:69113-74425	69113-74425	98.6%	109.95	136.67	104.03	96.21	88.38	136.48	123.31	100.12	112.43	0.46	0.41	0.47	0.17	0.83	Matched[1857]
YFL032W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene HAC1/YFL031W; YFL032W is not an essential gene"	Dubious	chr6:74870-75190	74870-75190	99.2%	455.44	530.82	458.58	446.01	716.14	468.00	493.13	452.30	592.07	1.82	1.84	2.45	0.39	1.05	Overlap[1858]
YFL031W	HAC1	"bZIP transcription factor (ATF/CREB1 homolog) that regulates the unfolded protein response, via UPRE binding, and membrane biogenesis; ER stress-induced splicing pathway utilizing Ire1p, Trl1p and Ada5p facilitates efficient Hac1p synthesis"	Verified	chr6:75177-76145	75177-75837,76090-76145	98.3%	2677.54	3176.74	2691.72	2599.54	4081.55	2965.43	2927.14	2645.63	3523.49	10.81	10.74	14.60	0.41	-0.71	Matched[1858]
YFL031C-A		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps HAC1/YFL031W; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr6:76012-76113	76012-76113	99.0%	3040.86	3595.54	2862.57	2822.95	5249.69	3189.43	3318.20	2842.76	4219.56	12.25	11.54	17.48	0.57	NaN	Covered/w/another[1858]
YFL030W	AGX1	"Alanine:glyoxylate aminotransferase (AGT), catalyzes the synthesis of glycine from glyoxylate, which is one of three pathways for glycine biosynthesis in yeast; has similarity to mammalian and plant alanine:glyoxylate aminotransferases"	Verified	chr6:76829-77986	76829-77986	98.5%	23.66	58.71	45.57	38.56	135.83	69.23	41.19	42.06	102.53	0.15	0.17	0.42	1.29	0.98	Covered/w/another[1859]
YFL029C	CAK1	"Cyclin-dependent kinase-activating kinase required for passage through the cell cycle, phosphorylates and activates Cdc28p; nucleotide-binding pocket differs significantly from those of most other protein kinases"	Verified	chr6:78053-79159	78053-79159	99.1%	101.17	107.55	123.04	98.44	166.79	97.52	104.36	110.74	132.16	0.39	0.45	0.55	0.26	0.52	Covered/w/another[1859]
YFL028C	CAF16	"Part of the evolutionarily-conserved CCR4-NOT transcriptional regulatory complex involved in controlling mRNA initiation, elongation, and degradation; putative ABC ATPase; interacts with Ssn2p, Ssn3p, and Ssn8p"	Verified	chr6:79342-80211	79342-80211	99.3%	216.52	231.57	196.84	181.78	195.68	130.84	224.04	189.31	163.26	0.83	0.77	0.68	-0.21	-0.57	Covered/w/another[1859]
YFL027C	GYP8	"GTPase-activating protein for yeast Rab family members; Ypt1p is the preferred in vitro substrate but also acts on Sec4p, Ypt31p and Ypt32p; involved in the regulation of ER to Golgi vesicle transport"	Verified	chr6:80417-81910	80417-81910	99.2%	134.89	169.96	117.36	99.82	90.38	62.72	152.43	108.59	76.55	0.56	0.44	0.32	-0.50	-0.21	Matched[1860]
YFL026W	STE2	Receptor for alpha-factor pheromone; seven transmembrane-domain GPCR that interacts with both pheromone and a heterotrimeric G protein to initiate the signaling response that leads to mating between haploid a and alpha cells	Verified	chr6:82578-83873	82578-83873	99.1%	2836.45	3649.53	2636.29	2285.05	1066.20	576.32	3242.99	2460.67	821.26	11.97	9.99	3.40	-1.58	-1.57	Frag>80[1861,1862]
YFL025C	BST1	"GPI inositol deacylase of the ER that negatively regulates COPII vesicle formation, prevents production of vesicles with defective subunits, required for proper discrimination between resident ER proteins and Golgi-bound cargo molecules"	Verified	chr6:84143-87232	84143-87232	99.0%	72.25	75.52	44.46	43.81	50.35	50.35	73.89	44.14	50.35	0.27	0.18	0.21	0.19	-0.15	Matched[1863]
YFL024C	EPL1	"Component of NuA4, which is an essential histone H4/H2A acetyltransferase complex; homologous to Drosophila Enhancer of Polycomb"	Verified	chr6:87845-90343	87845-90343	98.9%	150.56	146.51	121.01	95.51	147.32	121.01	148.53	108.26	134.17	0.55	0.44	0.56	0.31	0.63	Matched[1864]
YFL023W	BUD27	"Protein involved in bud-site selection, nutrient signaling, and gene expression controlled by the TOR kinase; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern"	Verified	chr6:90984-93374	90984-93374	95.4%	113.52	81.08	69.69	50.84	5.70	6.14	97.30	60.27	5.92	0.36	0.24	0.02	-3.35	-2.47	Matched[1865]
YFL022C	FRS2	"Alpha subunit of cytoplasmic phenylalanyl-tRNA synthetase, forms a tetramer with Frs1p to form active enzyme; evolutionarily distant from mitochondrial phenylalanyl-tRNA synthetase based on protein sequence, but substrate binding is similar"	Verified	chr6:93497-95008	93497-95008	98.7%	755.36	638.74	756.70	609.25	245.98	244.64	697.05	682.98	245.31	2.57	2.77	1.02	-1.48	-0.79	Matched[1866]
YFL021W	GAT1	Transcriptional activator of genes involved in nitrogen catabolite repression; contains a GATA-1-type zinc finger DNA-binding motif; activity and localization regulated by nitrogen limitation and Ure2p	Verified	chr6:95964-97496	95964-97496	99.0%	237.17	292.51	237.83	206.21	156.80	145.60	264.84	222.02	151.20	0.98	0.90	0.63	-0.55	0.15	Frag>80[1868]
YFL021C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr6:95759-96613	95759-96613	98.9%	146.66	150.21	153.76	115.91	91.07	105.26	148.43	134.83	98.17	0.55	0.55	0.41	-0.46	NaN	Frag<80[1867]
YFL020C	PAU5	"Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme"	Verified	chr6:99225-99593	99225-99593	35.2%	0.00	7.70	0.00	0.00	61.58	46.18	3.85	0.00	53.88	0.01	0.00	0.22	Inf	1.19	Overlap[1870]
YFL019C		Dubious open reading frame unlikely to encode a protein; YFL019C is not an essential gene	Dubious	chr6:100246-100599	100246-100599	98.9%	8.57	11.42	11.42	11.42	65.68	45.69	10.00	11.42	55.69	0.04	0.05	0.23	2.29	0.89	Covered[1870]
YFL018C	LPD1	"Dihydrolipoamide dehydrogenase, the lipoamide dehydrogenase component (E3) of the pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase multi-enzyme complexes"	Verified	chr6:101622-103121	101622-103121	99.1%	911.87	885.62	921.29	953.59	1043.77	1012.81	898.75	937.44	1028.29	3.32	3.81	4.26	0.13	0.35	Frag>80[1871,1872]
YFL017W-A	SMX2	"Core Sm protein Sm G; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Sme1p, and Smx3p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm G"	Verified	chr6:103693-103926	103693-103926	98.7%	337.78	233.85	225.19	212.20	259.83	134.25	285.82	218.69	197.04	1.06	0.89	0.82	-0.15	-0.26	Matched[1873]
YFL017C	GNA1	"Evolutionarily conserved glucosamine-6-phosphate acetyltransferase required for multiple cell cycle events including passage through START, DNA synthesis, and mitosis; involved in UDP-N-acetylglucosamine synthesis, forms GlcNAc6P from AcCoA"	Verified	chr6:103977-104456	103977-104456	99.3%	415.46	421.75	365.10	388.18	375.59	253.89	418.60	376.64	314.74	1.55	1.53	1.30	-0.26	-0.48	Matched[1874]
YFL016C	MDJ1	Protein involved in folding of mitochondrially synthesized proteins in the mitochondrial matrix; localizes to the mitochondrial inner membrane; member of the DnaJ family of molecular chaperones	Verified	chr6:104695-106230	104695-106230	98.9%	277.25	278.57	279.23	295.69	3466.67	3238.15	277.91	287.46	3352.41	1.03	1.17	13.89	3.54	2.92	Matched[1875]
YFL015W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr6:106409-106726	106409-106726	97.9%	9.64	6.42	0.00	12.85	61.03	38.54	8.03	6.42	49.79	0.03	0.03	0.21	2.95	NaN	Matched[1876]
YFL015C		Dubious open reading frame unlikely to encode a protein; partially overlaps dubious ORF YFL015W-A; YFL015C is not an essential gene	Dubious	chr6:106463-106957	106463-106957	97.6%	8.28	18.63	2.07	14.49	53.83	43.47	13.46	8.28	48.65	0.05	0.03	0.20	2.55	3.61	Frag>80[1876,1877]
YFL014W	HSP12	"Plasma membrane localized protein that protects membranes from desiccation; induced by heat shock, oxidative stress, osmostress, stationary phase entry, glucose depletion, oleate and alcohol; regulated by the HOG and Ras-Pka pathways"	Verified	chr6:107250-107579	107250-107579	98.1%	259.36	2247.78	367.43	484.75	111073.72	54727.90	1253.57	426.09	82900.81	4.63	1.73	343.49	7.60	4.63	Matched[1878]
YFL013W-A		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps IES1/YFL013C; identified by gene-trapping, microarray expression analysis, and genome-wide homology searching"	Dubious	chr6:107793-108596	107793-108596	99.2%	191.87	220.71	215.70	175.57	170.55	131.68	206.29	195.63	151.11	0.76	0.79	0.63	-0.37	NaN	Covered/w/another[1879]
YFL012W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene IES1/YFL013C"	Dubious	chr6:109804-110178	109804-110178	99.2%	26.89	29.58	34.96	29.58	13.45	18.83	28.24	32.27	16.14	0.10	0.13	0.07	-1.00	0.15	Frag<80[1880]
YFL013C	IES1	Subunit of the INO80 chromatin remodeling complex	Verified	chr6:107846-109924	107846-109924	99.3%	136.16	152.64	141.49	129.38	103.21	107.57	144.40	135.44	105.39	0.53	0.55	0.44	-0.36	0.01	Matched[1879]
YFL012W		Putative protein of unknown function; transcribed during sporulation; null mutant exhibits increased resistance to rapamycin	Uncharacterized	chr6:110641-111087	110641-111087	98.8%	13.59	9.06	4.53	6.79	15.85	2.26	11.32	5.66	9.06	0.04	0.02	0.04	0.68	-0.18	Overlap[1881]
YFL011W	HXT10	"Putative hexose transporter, expressed at low levels and expression is repressed by glucose"	Verified	chr6:112339-113979	112339-113979	98.7%	4.32	9.88	1.85	1.85	8.03	22.24	7.10	1.85	15.13	0.03	0.01	0.06	3.03	1.02	
YFL010W-A	AUA1	"Protein required for the negative regulation by ammonia of Gap1p, which is a general amino acid permease"	Verified	chr6:114984-115268	114984-115268	95.1%	663.80	829.75	715.43	545.79	1128.46	789.18	746.77	630.61	958.82	2.76	2.56	3.97	0.60	0.42	Matched[1882]
YFL010C	WWM1	"WW domain containing protein of unknown function; binds to Mca1p, a caspase-related protease that regulates H2O2-induced apoptosis; overexpression causes Gi phase growth arrest and clonal death that is suppressed by overexpression of MCA1"	Verified	chr6:115102-115737	115102-115737	96.8%	683.53	842.65	699.77	599.11	1013.12	910.84	763.09	649.44	961.98	2.82	2.64	3.99	0.57	0.74	Matched[1882]
YFL009W	CDC4	"F-box protein required for G1/S and G2/M transition, associates with Skp1p and Cdc53p to form a complex, SCFCdc4, which acts as ubiquitin-protein ligase directing ubiquitination of the phosphorylated CDK inhibitor Sic1p"	Verified	chr6:116139-118478	116139-118478	77.4%	111.56	107.69	114.32	109.90	133.65	130.33	109.62	112.11	131.99	0.40	0.46	0.55	0.24	0.92	Frag>80[1883,1884]
YFL008W	SMC1	"Subunit of the multiprotein cohesin complex, essential protein involved in chromosome segregation and in double-strand DNA break repair; SMC chromosomal ATPase family member, binds DNA with a preference for DNA with secondary structure"	Verified	chr6:119424-123101	119424-123101	98.6%	168.48	143.66	148.90	142.56	96.79	91.55	156.07	145.73	94.17	0.58	0.59	0.39	-0.63	-0.08	Matched[1885]
YFL007W	BLM10	"Proteosome activator subunit; found in association with core particles, with and without the 19S regulatory particle; required for resistance to bleomycin, may be involved in protecting against oxidative damage; similar to mammalian PA200"	Verified	chr6:123474-129905	123474-129905	98.9%	116.19	85.37	98.89	91.50	86.31	99.52	100.78	95.20	92.92	0.37	0.39	0.38	-0.03	0.31	Frag>80[1886,1887]
YFL005W	SEC4	Secretory vesicle-associated Rab GTPase essential for exocytosis; associates with the exocyst component Sec15p and may regulate polarized delivery of transport vesicles to the exocyst at the plasma membrane	Verified	chr6:130329-130976	130329-130976	98.4%	921.87	746.28	852.89	802.72	1012.80	780.77	834.07	827.80	896.79	3.08	3.36	3.72	0.12	-0.63	Matched[1888]
YFL004W	VTC2	Vacuolar membrane protein involved in vacuolar polyphosphate accumulation; functions as a regulator of vacuolar H+-ATPase activity and vacuolar transporter chaperones; involved in protein localization and non-autophagic vacuolar fusion	Verified	chr6:131805-134291	131805-134291	98.7%	862.32	942.16	894.50	885.95	279.43	229.33	902.24	890.22	254.38	3.33	3.61	1.05	-1.81	-1.44	Matched[1889]
YFL003C	MSH4	"Protein involved in meiotic recombination, required for normal levels of crossing over, colocalizes with Zip2p to discrete foci on meiotic chromosomes, has homology to bacterial MutS protein"	Verified	chr6:134516-137152	134516-137152	99.3%	8.79	10.70	8.02	6.88	13.37	6.88	9.74	7.45	10.12	0.04	0.03	0.04	0.44	-0.02	Frag<80[1890]
YFL002C	SPB4	"Putative ATP-dependent RNA helicase, nucleolar protein required for synthesis of 60S ribosomal subunits at a late step in the pathway; sediments with 66S pre-ribosomes in sucrose gradients"	Verified	chr6:145109-146929	145109-146929	99.2%	157.81	119.05	112.96	98.56	35.99	16.06	138.43	105.76	26.02	0.51	0.43	0.11	-2.02	-0.57	Matched[1891]
YFL001W	DEG1	"Non-essential tRNA:pseudouridine synthase, introduces pseudouridines at position 38 or 39 in tRNA, important for maintenance of translation efficiency and normal cell growth, localizes to both the nucleus and cytoplasm"	Verified	chr6:147126-148454	147126-148454	98.8%	112.71	92.15	97.48	87.58	44.17	35.03	102.43	92.53	39.60	0.38	0.38	0.16	-1.22	-0.96	Matched[1892]
YFR001W	LOC1	Nuclear protein involved in asymmetric localization of ASH1 mRNA; binds double-stranded RNA in vitro; constituent of 66S pre-ribosomal particles	Verified	chr6:149105-149719	149105-149719	98.2%	491.86	327.91	342.81	286.50	84.46	67.90	409.88	314.66	76.18	1.51	1.28	0.32	-2.05	-2.98	Matched[1893]
YFR002W	NIC96	"Component of the nuclear pore complex, required for nuclear pore formation; forms a subcomplex with Nsp1p, Nup57p, and Nup49p"	Verified	chr6:150011-152530	150011-152530	98.9%	185.87	167.40	140.50	149.74	97.95	88.72	176.63	145.12	93.33	0.65	0.59	0.39	-0.64	-0.23	Matched[1894]
YFR003C	YPI1	"Inhibitor of the type I protein phosphatase Glc7p, which is involved in regulation of a variety of metabolic processes; overproduction causes decreased cellular content of glycogen"	Verified	chr6:152652-153119	152652-153119	99.1%	258.85	334.35	312.78	360.24	1207.98	606.15	296.60	336.51	907.06	1.09	1.37	3.76	1.43	0.96	Matched[1895]
YFR004W	RPN11	Metalloprotease subunit of the 19S regulatory particle of the 26S proteasome lid; couples the deubiquitination and degradation of proteasome substrates	Verified	chr6:153388-154308	153388-154308	98.5%	516.13	404.74	564.65	512.82	1097.33	633.03	460.44	538.74	865.18	1.70	2.19	3.58	0.68	0.42	Matched[1896]
YFR005C	SAD1	"Conserved zinc-finger domain protein involved in pre-mRNA splicing, required for assembly of U4 snRNA into the U4/U6 particle"	Verified	chr6:154522-155868	154522-155868	99.1%	179.07	198.55	130.37	119.88	75.67	61.44	188.81	125.12	68.55	0.70	0.51	0.28	-0.87	-0.50	Matched[1897]
YFR006W		Putative X-Pro aminopeptidase; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YFR006W is not an essential gene	Uncharacterized	chr6:156139-157746	156139-157746	98.8%	394.75	525.71	424.34	421.83	411.12	331.16	460.23	423.09	371.14	1.70	1.72	1.54	-0.19	0.10	Frag>80[1898]
YFR007W		Putative protein of unknown function with similarity to pantothenate kinases from other organisms; YFR007W is not an essential gene	Uncharacterized	chr6:159293-160354	159293-160354	98.9%	73.33	99.04	94.28	80.00	112.38	64.76	86.19	87.14	88.57	0.32	0.35	0.37	0.02	0.02	Covered/w/another[1899]
YFR008W	FAR7	"Protein involved in G1 cell cycle arrest in response to pheromone, in a pathway different from the Far1p-dependent pathway; interacts with Far3p, Far8p, Far9p, Far10p, and Far11p"	Verified	chr6:160529-161194	160529-161194	97.0%	58.82	77.39	77.39	65.01	171.82	95.97	68.11	71.20	133.89	0.25	0.29	0.55	0.91	0.96	Covered/w/another[1899]
YFR009W	GCN20	"Positive regulator of the Gcn2p kinase activity, forms a complex with Gcn1p; proposed to stimulate Gcn2p activation by an uncharged tRNA"	Verified	chr6:162482-164740	162482-164740	98.8%	445.13	388.64	390.89	407.47	290.47	282.85	416.88	399.18	286.66	1.54	1.62	1.19	-0.48	-0.12	Matched[1900]
YFR009W-A		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified gene YFR009W; identified by expression profiling and mass spectrometry"	Dubious	chr6:163869-164126	163869-164126	99.1%	504.40	441.84	445.75	508.31	316.72	344.09	473.12	477.03	330.40	1.75	1.94	1.37	-0.53	NaN	Covered/w/another[1900]
YFR010W	UBP6	"Ubiquitin-specific protease situated in the base subcomplex of the 26S proteasome, releases free ubiquitin from branched polyubiquitin chains; deletion causes hypersensitivity to cycloheximide and other toxic compounds"	Verified	chr6:165060-166559	165060-166559	98.7%	405.25	422.13	428.89	424.16	692.29	593.68	413.69	426.52	642.99	1.53	1.73	2.66	0.59	0.86	Matched[1901]
YFR010W-A		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the uncharacterized gene YFR011C; identified by expression profiling and mass spectrometry"	Dubious	chr6:166721-166909	166721-166909	99.6%	329.28	270.86	318.65	302.72	477.98	276.17	300.07	310.69	377.07	1.11	1.26	1.56	0.28	NaN	Matched[1902]
YFR011C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YFR011C is not an essential gene"	Uncharacterized	chr6:166739-167251	166739-167251	99.4%	278.39	211.73	329.36	282.31	429.34	274.46	245.06	305.83	351.90	0.90	1.24	1.46	0.20	0.02	Matched[1902]
YFR012W		Putative protein of unknown function	Uncharacterized	chr6:167881-168489	167881-168489	99.1%	6.62	3.31	8.28	9.94	9.94	14.91	4.97	9.11	12.42	0.02	0.04	0.05	0.45	-0.02	
YFR012W-A		Putative protein of unknown function; identified by homology	Uncharacterized	chr6:169216-169302	169216-169302	98.9%	11.63	0.00	11.63	0.00	0.00	0.00	5.81	5.81	0.00	0.02	0.02	0.00	-Inf	0.09	
YFR013W	IOC3	"Member of a complex (Isw1a) with Isw1p that has nucleosome-stimulated ATPase activity and represses transcription initiation by specific positioning of a promoter proximal dinucleosome; has homology to Esc8p, which is involved in silencing"	Verified	chr6:169914-172277	169914-172277	98.7%	174.87	135.01	138.87	137.58	88.29	81.01	154.94	138.22	84.65	0.57	0.56	0.35	-0.71	-0.47	Matched[1903]
YFR014C	CMK1	"Calmodulin-dependent protein kinase; may play a role in stress response, many CA++/calmodulan dependent phosphorylation substrates demonstrated in vitro, amino acid sequence similar to Cmk2p and mammalian Cam Kinase II"	Verified	chr6:172529-173869	172529-173869	99.3%	211.02	310.90	343.94	367.22	521.92	368.72	260.96	355.58	445.32	0.96	1.44	1.85	0.32	0.41	Matched[1904]
YFR015C	GSY1	"Glycogen synthase with similarity to Gsy2p, the more highly expressed yeast homolog; expression induced by glucose limitation, nitrogen starvation, environmental stress, and entry into stationary phase"	Verified	chr6:174257-176383	174257-176383	99.0%	283.42	703.56	920.05	1302.69	948.06	1059.14	493.49	1111.37	1003.60	1.82	4.51	4.16	-0.15	0.12	Frag>80[1905,1906,1907]
YFR016C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and bud; interacts with Spa2p; YFL016C is not an essential gene	Verified	chr6:177034-180735	177034-180735	93.2%	238.87	248.44	218.29	226.40	259.45	382.65	243.65	222.35	321.05	0.90	0.90	1.33	0.53	1.28	Matched[1908]
YFR017C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and is induced in response to the DNA-damaging agent MMS; YFR017C is not an essential gene	Uncharacterized	chr6:182262-182849	182262-182849	98.2%	55.40	174.87	186.99	212.96	1063.05	630.21	115.13	199.97	846.63	0.43	0.81	3.51	2.08	1.84	Matched[1909]
YFR018C		Putative protein of unknown function	Uncharacterized	chr6:183119-184210	183119-184210	98.4%	213.95	240.00	232.56	185.12	114.42	58.60	226.98	208.84	86.51	0.84	0.85	0.36	-1.27	-0.95	Matched[1910]
YFR019W	FAB1	"1-phosphatidylinositol-3-phosphate 5-kinase; vacuolar membrane kinase that generates phosphatidylinositol (3,5)P2, which is involved in vacuolar sorting and homeostasis"	Verified	chr6:184490-191326	184490-191326	98.4%	61.36	67.60	52.74	61.21	48.43	73.39	64.48	56.98	60.91	0.24	0.23	0.25	0.10	0.34	Frag>80[1911,1912]
YFR020W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr6:192726-193424	192726-193424	98.7%	137.63	198.48	123.14	108.66	131.84	82.58	168.06	115.90	107.21	0.62	0.47	0.44	-0.11	0.02	Frag<80[1914]
YFR021W	ATG18	"Phosphatidylinositol 3,5-bisphosphate-binding protein of the vacuolar membrane, predicted to fold as a seven-bladed beta-propeller; required for recycling of Atg9p through the pre-autophagosomal structure"	Verified	chr6:194800-196302	194800-196302	98.6%	97.14	112.65	72.85	76.90	118.73	136.26	104.90	74.88	127.49	0.39	0.30	0.53	0.77	1.29	Matched[1915]
YFR022W	ROG3	"Protein that binds to Rsp5p, which is a hect-type ubiquitin ligase, via its 2 PY motifs; has similarity to Rod1p; mutation suppresses the temperature sensitivity of an mck1 rim11 double mutant"	Verified	chr6:196821-199022	196821-199022	98.9%	69.33	102.85	62.45	56.94	68.88	69.33	86.09	59.69	69.11	0.32	0.24	0.29	0.21	1.11	Matched[1916]
YFR023W	PES4	"Poly(A) binding protein, suppressor of DNA polymerase epsilon mutation, similar to Mip6p"	Verified	chr6:199862-201697	199862-201697	98.9%	2.75	1.65	2.75	0.55	7.16	2.75	2.20	1.65	4.96	0.01	0.01	0.02	1.58	0.80	Frag<80[1917]
YFR024C-A	LSB3	"Protein containing a C-terminal SH3 domain; binds Las17p, which is a homolog of human Wiskott-Aldrich Syndrome protein involved in actin patch assembly and actin polymerization"	Verified	chr6:201948-203421	201948-203256,203375-203421	98.9%	492.09	471.22	452.58	465.25	618.10	524.90	481.66	458.91	571.50	1.78	1.86	2.37	0.32	0.80	Matched[1918]
YFR025C	HIS2	"Histidinolphosphatase, catalyzes the eighth step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts; transcription is regulated by general amino acid control"	Verified	chr6:203731-204738	203731-204738	99.0%	183.44	268.65	197.48	174.42	291.70	204.49	226.05	185.95	248.10	0.83	0.75	1.03	0.42	0.34	Matched[1919]
YFR026C		Putative protein of unknown function	Uncharacterized	chr6:205736-206245	205736-206245	99.0%	39.61	47.53	39.61	29.71	57.44	37.63	43.57	34.66	47.53	0.16	0.14	0.20	0.46	0.59	Covered[1921]
YFR027W	ECO1	"Acetyltransferase required for the establishment of sister chromatid cohesion during DNA replication, but not for its maintenance during G2 and M phases; also required for postreplicative double-strand break repair; interacts with Chl1p"	Verified	chr6:207440-208285	207440-208285	98.3%	50.52	32.47	38.49	43.30	60.14	31.27	41.50	40.89	45.71	0.15	0.17	0.19	0.16	0.53	Matched[1922]
YFR028C	CDC14	"Protein phosphatase required for mitotic exit; located in the nucleolus until liberated by the FEAR and Mitotic Exit Network in anaphase, enabling it to act on key substrates to effect a decrease in CDK/B-cyclin activity and mitotic exit"	Verified	chr6:208401-210056	208401-210056	98.9%	215.58	202.14	225.35	192.37	148.40	103.82	208.86	208.86	126.11	0.77	0.85	0.52	-0.73	-0.22	Matched[1923]
YFR029W	PTR3	"Component of the SPS plasma membrane amino acid sensor system (Ssy1p-Ptr3p-Ssy5p), which senses external amino acid concentration and transmits intracellular signals that result in regulation of expression of amino acid permease genes"	Verified	chr6:210925-212961	210925-212961	98.8%	52.19	68.59	52.19	46.72	71.57	66.10	60.39	49.45	68.84	0.22	0.20	0.29	0.48	1.00	Covered/w/another[1924]
YFR030W	MET10	"Subunit alpha of assimilatory sulfite reductase, which is responsible for the conversion of sulfite into sulfide"	Verified	chr6:213300-216407	213300-216407	99.0%	55.24	90.67	50.37	42.25	45.82	54.92	72.96	46.31	50.37	0.27	0.19	0.21	0.12	0.68	Covered/w/another[1924]
YFR031C	SMC2	"Component of the condensin complex, essential SMC chromosomal ATPase family member that forms a complex with Smc4p to form the active ATPase; Smc2p/Smc4p complex binds DNA, possibly in the cleft formed by the coiled-coil of the folded dimer"	Verified	chr6:216582-220094	216582-220094	99.4%	112.51	105.64	80.73	69.28	46.67	49.24	109.08	75.01	47.95	0.40	0.30	0.20	-0.65	-0.44	Covered/w/another[1924]
YFR031C-A	RPL2A	"Protein component of the large (60S) ribosomal subunit, identical to Rpl2Bp and has similarity to E. coli L2 and rat L8 ribosomal proteins"	Verified	chr6:220495-221406	220495-221255,221403-221406	44.3%	7427.94	5514.19	6357.54	5410.98	1150.02	905.27	6471.06	5884.26	1027.64	23.89	23.89	4.26	-2.52	-3.15	Frag>80[1925,1926]
YFR032C		Putative protein of unknown function; transcribed during sporulation; YFR032C is not an essential gene	Uncharacterized	chr6:222078-222947	222078-222947	98.5%	11.67	8.17	2.33	2.33	1.17	17.50	9.92	2.33	9.33	0.04	0.01	0.04	2.00	0.28	
YFR032C-A	RPL29	"Protein component of the large (60S) ribosomal subunit, has similarity to rat L29 ribosomal protein; not essential for translation, but required for proper joining of the large and small ribosomal subunits and for normal translation rate"	Verified	chr6:223246-223760	223246-223428,223759-223760	98.4%	13227.18	10712.42	11794.10	11008.92	4639.67	3514.07	11969.80	11401.51	4076.87	44.19	46.28	16.89	-1.48	-3.27	Matched[1927]
YFR032C-B		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr6:223698-223961	223698-223961	98.9%	72.79	45.97	38.31	65.12	19.15	45.97	59.38	51.72	32.56	0.22	0.21	0.13	-0.67	NaN	Matched[1927]
YFR033C	QCR6	"Subunit 6 of the ubiquinol cytochrome-c reductase complex, which is a component of the mitochondrial inner membrane electron transport chain; highly acidic protein; required for maturation of cytochrome c1"	Verified	chr6:224314-224757	224314-224757	98.0%	992.72	1052.47	1116.81	1452.32	2123.32	1459.21	1022.60	1284.57	1791.27	3.77	5.21	7.42	0.48	0.04	Matched[1928]
YFR034C	PHO4	Basic helix-loop-helix (bHLH) transcription factor of the myc-family; binds cooperatively with Pho2p to the PHO5 promoter; function is regulated by phosphorylation at multiple sites and by phosphate availability	Verified	chr6:225008-225946	225008-225946	98.5%	176.31	205.52	159.00	106.00	53.00	62.74	190.91	132.50	57.87	0.70	0.54	0.24	-1.20	-0.66	Matched[1929]
YFR034W-A		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps YFR035C; identified by gene-trapping, microarray expression analysis, and genome-wide homology searching"	Dubious	chr6:226010-226297	226010-226297	98.2%	127.25	109.57	91.90	102.50	42.42	31.81	118.41	97.20	37.11	0.44	0.39	0.15	-1.39	NaN	Covered/w/another[1929]
YFR035C		"Putative protein of unknown function, deletion mutant exhibits synthetic phenotype with alpha-synuclein"	Uncharacterized	chr6:226109-226453	226109-226453	98.4%	259.33	232.81	271.12	253.44	97.25	94.30	246.07	262.28	95.78	0.91	1.06	0.40	-1.45	-0.64	Frag<80[1930]
YFR036W	CDC26	"Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition"	Verified	chr6:226950-227324	226950-227324	98.2%	67.87	57.01	57.01	29.86	119.44	84.15	62.44	43.43	101.80	0.23	0.18	0.42	1.23	0.66	Matched[1931]
YFR036W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene RSC8"	Dubious	chr6:227438-228088	227438-228088	99.3%	958.82	813.45	813.45	731.49	647.98	518.07	886.14	772.47	583.03	3.27	3.14	2.42	-0.41	NaN	Matched[1932]
YFR037C	RSC8	"Component of the RSC chromatin remodeling complex; essential for viability and mitotic growth; homolog of SWI/SNF subunit Swi3p, but unlike Swi3p, does not activate transcription of reporters"	Verified	chr6:227500-229173	227500-229173	99.0%	666.62	593.62	579.75	511.58	411.43	373.43	630.12	545.66	392.43	2.33	2.21	1.63	-0.48	0.02	Frag>80[1931,1932,1933]
YFR038W		Putative ATPase containing the DEAD/H helicase-related sequence motif; null mutant displays increased levels of spontaneous Rad52 foci	Uncharacterized	chr6:229367-231928	229367-231928	98.8%	130.04	113.43	113.04	98.02	66.01	50.20	121.74	105.53	58.10	0.45	0.43	0.24	-0.86	-0.54	Covered/w/another[1934]
YFR039C		Putative protein of unknown function; YFR039C is not an essential gene	Uncharacterized	chr6:231999-233531	231999-233531	99.2%	144.05	147.99	128.92	143.39	100.64	92.09	146.02	136.15	96.36	0.54	0.55	0.40	-0.50	-0.01	Covered/w/another[1934]
YFR040W	SAP155	"Protein that forms a complex with the Sit4p protein phosphatase and is required for its function; member of a family of similar proteins including Sap4p, Sap185p, and Sap190p"	Verified	chr6:234229-237237	234229-237237	98.8%	209.89	187.69	182.98	174.91	137.57	141.61	198.79	178.95	139.59	0.73	0.73	0.58	-0.36	-0.07	Covered/w/another[1935]
YFR041C	ERJ5	Type I membrane protein with a J domain is required to preserve the folding capacity of the endoplasmic reticulum; loss of the non-essential ERJ5 gene leads to a constitutively induced unfolded protein response	Verified	chr6:237355-238242	237355-238242	99.3%	318.77	252.98	269.99	247.31	267.73	172.43	285.88	258.65	220.08	1.06	1.05	0.91	-0.23	-0.43	Covered/w/another[1935]
YFR042W		Protein of unknown function required for cell viability; localizes to the endoplasmic reticulum membrane	Uncharacterized	chr6:238445-239047	238445-239047	99.2%	120.36	132.06	175.52	163.82	407.88	213.97	126.21	169.67	310.93	0.47	0.69	1.29	0.87	0.31	Matched[1936]
YFR043C		Hypothetical protein; null mutant displays increased levels of spontaneous Rad52 foci	Uncharacterized	chr6:239101-239814	239101-239814	99.2%	80.45	73.39	80.45	52.22	110.09	49.40	76.92	66.33	79.74	0.28	0.27	0.33	0.27	0.27	Matched[1937]
YFR044C	DUG1	Probable di- and tri-peptidase; forms a complex with Dug2p and Dug3p to degrade glutathione (GSH) and other peptides containing a gamma-glu-X bond in an alternative pathway to GSH degradation by gamma-glutamyl transpeptidase (Ecm38p)	Verified	chr6:239979-241424	239979-241424	98.8%	698.84	981.04	729.65	780.77	895.61	791.97	839.94	755.21	843.79	3.10	3.07	3.50	0.16	0.56	Matched[1938]
YFR045W		"Putative mitochondrial transport protein; null mutant is viable, exhibits decreased levels of chitin and normal resistance to calcofluor white"	Uncharacterized	chr6:241985-242986	241985-241996,242069-242986	99.0%	90.13	140.08	130.31	106.42	199.81	111.85	115.11	118.37	155.83	0.42	0.48	0.65	0.40	0.29	Matched[1939]
YFR046C	CNN1	"Kinetochore protein of unknown function; associated with the essential kinetochore proteins Nnf1p and Spc24p; phosphorylated by both Clb5-Cdk1 and, to a lesser extent, Clb2-Cdk1."	Verified	chr6:243061-244146	243061-244146	99.2%	71.47	81.68	66.83	57.55	66.83	38.99	76.58	62.19	52.91	0.28	0.25	0.22	-0.23	0.06	Matched[1940]
YFR047C	BNA6	"Quinolinate phosphoribosyl transferase, required for biosynthesis of nicotinic acid from tryptophan via kynurenine pathway"	Verified	chr6:244266-245153	244266-245153	99.1%	647.79	821.67	639.83	601.19	888.72	769.39	734.73	620.51	829.06	2.71	2.52	3.44	0.42	0.72	Matched[1941]
YFR048W	RMD8	Cytosolic protein required for sporulation	Verified	chr6:246133-248121	246133-248121	98.7%	86.04	73.32	88.08	68.73	77.39	60.08	79.68	78.41	68.73	0.29	0.32	0.28	-0.19	0.39	Matched[1942]
YFR049W	YMR31	"Mitochondrial ribosomal protein of the small subunit, has similarity to human mitochondrial ribosomal protein MRP-S36"	Verified	chr6:248510-248881	248510-248881	98.4%	322.44	472.73	483.66	508.25	1016.51	743.25	397.59	495.96	879.88	1.47	2.01	3.65	0.83	0.47	Matched[1943]
YFR050C	PRE4	20S proteasome beta-type subunit	Verified	chr6:249053-249853	249053-249853	99.0%	724.75	644.08	780.21	646.60	1221.36	772.65	684.42	713.41	997.01	2.53	2.90	4.13	0.48	0.47	Matched[1944]
YFR051C	RET2	"Delta subunit of the coatomer complex (COPI), which coats Golgi-derived transport vesicles; involved in retrograde transport between Golgi and ER"	Verified	chr6:250150-251790	250150-251790	98.6%	622.65	589.26	622.65	573.80	531.13	422.93	605.95	598.22	477.03	2.24	2.43	1.98	-0.33	0.32	Frag>80[1945,1946]
YFR052W	RPN12	"Subunit of the 19S regulatory particle of the 26S proteasome lid; synthetically lethal with RPT1, which is an ATPase component of the 19S regulatory particle; physically interacts with Nob1p and Rpn3p"	Verified	chr6:252492-253316	252492-253316	99.0%	506.86	370.96	495.84	412.59	839.87	531.35	438.91	454.22	685.61	1.62	1.84	2.84	0.59	0.62	Matched[1947]
YFR052C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr6:253416-253721	253416-253721	99.1%	2565.89	6243.23	6338.88	6701.66	15576.75	7641.61	4404.56	6520.27	11609.18	16.26	26.47	48.10	0.83	NaN	Matched[1948]
YFR053C	HXK1	"Hexokinase isoenzyme 1, a cytosolic protein that catalyzes phosphorylation of glucose during glucose metabolism; expression is highest during growth on non-glucose carbon sources; glucose-induced repression involves the hexokinase Hxk2p"	Verified	chr6:253579-255036	253579-255036	98.5%	2007.02	5135.55	5470.40	6018.97	10750.05	7770.50	3571.28	5744.68	9260.28	13.18	23.32	38.37	0.69	-0.07	Frag>80[1948,1949,1950]
YFR054C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr6:258842-259420	258842-259420	98.4%	8.77	5.26	5.26	3.51	21.05	5.26	7.02	4.39	13.16	0.03	0.02	0.05	1.58	1.56	
YFR055W		"Putative cystathionine beta-lyase; involved in copper ion homeostasis and sulfur metabolism; null mutant displays increased levels of spontaneous Rad52 foci; expression induced by nitrogen limitation in a GLN3, GAT1-dependent manner"	Uncharacterized	chr6:264191-265213	264191-265213	98.5%	300.79	193.58	212.44	146.92	57.58	48.64	247.19	179.68	53.11	0.91	0.73	0.22	-1.76	-1.77	Matched[1951]
YFR056C		Dubious open reading frame unlikely to encode a protein based on available experimental and comparative sequence data; partially overlaps the uncharacterized gene YFR055W	Dubious	chr6:263944-264312	263944-264312	99.1%	92.94	65.60	82.00	60.14	27.33	24.60	79.27	71.07	25.97	0.29	0.29	0.11	-1.45	-0.31	Covered/w/another[1951]
YFR057W		Putative protein of unknown function	Uncharacterized	chr6:269048-269503	269048-269503	99.3%	0.00	0.00	0.00	2.21	0.00	2.21	0.00	1.10	1.10	0.00	0.00	0.00	0.00	0.03	
YGL263W	COS12	"Protein of unknown function, member of the DUP380 subfamily of conserved, often subtelomerically-encoded proteins"	Verified	chr7:2790-3932	2790-3932	99.1%	23.83	9.71	13.24	12.36	7.94	4.41	16.77	12.80	6.18	0.06	0.05	0.03	-1.05	-1.97	
YGL262W		Putative protein of unknown function; null mutant displays elevated sensitivity to expression of a mutant huntingtin fragment or of alpha-synuclein; YGL262W is not an essential gene	Uncharacterized	chr7:5312-5839	5312-5839	98.6%	3.84	0.00	1.92	0.00	7.68	1.92	1.92	0.96	4.80	0.01	0.00	0.02	2.32	0.14	
YGL261C		Putative protein of unknown function; mRNA expression appears to be regulated by SUT1 and UPC2	Uncharacterized	chr7:6290-6652	6290-6652	9.4%	0.00	0.00	29.27	0.00	29.27	0.00	0.00	14.63	14.63	0.00	0.06	0.06	0.00	0.78	
YGL260W		Putative protein of unknown function; transcription is significantly increased in a NAP1 deletion background; deletion mutant has increased accumulation of nickel and selenium	Uncharacterized	chr7:6860-7090	6860-7090	2.5%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.13	
YGL259W	YPS5	Protein with similarity to GPI-anchored aspartic proteases such as Yap1p and Yap3p	Uncharacterized	chr7:8470-8967	8470-8967	38.0%	21.14	26.42	26.42	21.14	89.83	73.98	23.78	23.78	81.90	0.09	0.10	0.34	1.78	2.90	Overlap[1954]
YGL258W-A		Putative protein of unknown function	Uncharacterized	chr7:9162-9395	9162-9395	98.9%	12.96	30.23	12.96	30.23	146.84	90.70	21.59	21.59	118.77	0.08	0.09	0.49	2.46	2.81	Covered[1954]
YGL258W	VEL1	Protein of unknown function; highly induced in zinc-depleted conditions and has increased expression in NAP1 deletion mutants	Verified	chr7:11110-11730	11110-11730	65.4%	9.85	29.54	14.77	9.85	12.31	4.92	19.70	12.31	8.62	0.07	0.05	0.04	-0.51	-0.52	
YGL257C	MNT2	Mannosyltransferase involved in adding the 4th and 5th mannose residues of O-linked glycans	Verified	chr7:12481-14157	12481-14157	99.3%	193.37	163.34	165.75	162.14	75.07	56.45	178.36	163.94	65.76	0.66	0.67	0.27	-1.32	-0.96	Matched[1955]
YGL256W	ADH4	"Alcohol dehydrogenase isoenzyme type IV, dimeric enzyme demonstrated to be zinc-dependent despite sequence similarity to iron-activated alcohol dehydrogenases; transcription is induced in response to zinc deficiency"	Verified	chr7:14910-16307	14910-16307	99.0%	210.25	221.09	180.63	145.23	105.49	88.15	215.67	162.93	96.82	0.80	0.66	0.40	-0.75	-0.37	Matched[1956]
YGL255W	ZRT1	"High-affinity zinc transporter of the plasma membrane, responsible for the majority of zinc uptake; transcription is induced under low-zinc conditions by the Zap1p transcription factor"	Verified	chr7:20978-22108	20978-22108	98.8%	186.95	161.90	130.60	124.33	50.99	44.72	174.43	127.46	47.86	0.64	0.52	0.20	-1.41	-1.07	Covered[1958]
YGL254W	FZF1	"Transcription factor involved in sulfite metabolism, sole identified regulatory target is SSU1, overexpression suppresses sulfite-sensitivity of many unrelated mutants due to hyperactivation of SSU1, contains five zinc fingers"	Verified	chr7:22304-23203	22304-23203	98.8%	86.59	92.21	55.10	67.47	44.98	29.24	89.40	61.29	37.11	0.33	0.25	0.15	-0.72	-0.37	Matched[1959]
YGL253W	HXK2	Hexokinase isoenzyme 2 that catalyzes phosphorylation of glucose in the cytosol; predominant hexokinase during growth on glucose; functions in the nucleus to repress expression of HXK1 and GLK1 and to induce expression of its own gene	Verified	chr7:23935-25395	23935-25395	98.0%	4445.74	2896.54	5142.81	5132.33	1480.75	1111.26	3671.14	5137.57	1296.00	13.55	20.85	5.37	-1.99	-2.61	Matched[1960]
YGL252C	RTG2	"Sensor of mitochondrial dysfunction; regulates the subcellular location of Rtg1p and Rtg3p, transcriptional activators of the retrograde (RTG) and TOR pathways; Rtg2p is inhibited by the phosphorylated form of Mks1p"	Verified	chr7:25718-27484	25718-27484	99.2%	252.13	247.56	273.23	248.70	281.79	244.14	249.85	260.97	262.97	0.92	1.06	1.09	0.01	0.47	Frag>80[1961,1962]
YGL251C	HFM1	Meiosis specific DNA helicase involved in the conversion of double-stranded breaks to later recombination intermediates and in crossover control; catalyzes the unwinding of Holliday junctions; has ssDNA and dsDNA stimulated ATPase activity	Verified	chr7:27921-31636	27921-31426,31579-31636	99.3%	34.21	39.58	30.53	24.88	36.75	32.51	36.89	27.70	34.63	0.14	0.11	0.14	0.32	0.29	Frag<80[1963]
YGL250W		Putative protein of unknown function; deletion mutant results in reduced PIS1 expression and has growth defects on non-fermentable carbon sources and on minimal media; GFP-fusion protein localizes to both the cytoplasm and the nucleus	Uncharacterized	chr7:31910-32635	31910-32635	98.7%	71.14	112.99	118.57	94.86	206.45	156.23	92.07	106.71	181.34	0.34	0.43	0.75	0.76	0.48	Frag>80[1964,1965]
YGL249W	ZIP2	Meiosis-specific protein involved in normal synaptonemal complex formation and pairing between homologous chromosomes during meiosis	Verified	chr7:33098-35212	33098-35212	98.8%	19.13	24.87	11.00	11.00	30.61	18.66	22.00	11.00	24.63	0.08	0.04	0.10	1.16	0.81	Frag<80[1965,1966]
YGL248W	PDE1	"Low-affinity cyclic AMP phosphodiesterase, controls glucose and intracellular acidification-induced cAMP signaling, target of the cAMP-protein kinase A (PKA) pathway; glucose induces transcription and inhibits translation"	Verified	chr7:35653-36762	35653-36762	98.6%	166.25	274.04	159.85	156.20	379.08	363.55	220.14	158.03	371.32	0.81	0.64	1.54	1.23	1.36	Matched[1967]
YGL247W	BRR6	"Essential nuclear envelope integral membrane protein required for nuclear transport; depletion alters nucleoporin distribution and nuclear envelope morphology, suggesting a role in the spatial organization of nuclear pores"	Verified	chr7:36933-37526	36933-37526	98.8%	90.29	97.10	83.48	40.89	114.14	34.07	93.70	62.18	74.11	0.35	0.25	0.31	0.25	-0.52	Covered/w/another[1968]
YGL246C	RAI1	"Nuclear protein that binds to and stabilizes the exoribonuclease Rat1p, required for pre-rRNA processing"	Verified	chr7:37617-38780	37617-38780	99.3%	181.61	147.02	151.34	129.72	113.29	70.91	164.31	140.53	92.10	0.61	0.57	0.38	-0.61	-0.44	Covered/w/another[1968]
YGL245W	GUS1	"Glutamyl-tRNA synthetase (GluRS), forms a complex with methionyl-tRNA synthetase (Mes1p) and Arc1p; complex formation increases the catalytic efficiency of both tRNA synthetases and ensures their correct localization to the cytoplasm"	Verified	chr7:39023-41149	39023-41149	98.7%	1531.94	1483.84	1447.17	1570.03	831.92	985.26	1507.89	1508.60	908.59	5.57	6.12	3.76	-0.73	-0.13	Matched[1969]
YGL244W	RTF1	Subunit of the RNA polymerase II-associated Paf1 complex; directly or indirectly regulates DNA-binding properties of Spt15p and relative activities of different TATA elements; involved in telomere maintenance	Verified	chr7:41498-43174	41498-43174	98.2%	364.48	326.82	351.73	347.47	301.91	262.43	345.65	349.60	282.17	1.28	1.42	1.17	-0.31	0.08	Matched[1970]
YGL243W	TAD1	"tRNA-specific adenosine deaminase, deaminates adenosine-37 to inosine in tRNA-Ala"	Verified	chr7:43307-44509	43307-44509	98.7%	106.09	104.40	73.25	78.30	78.30	40.41	105.24	75.78	59.36	0.39	0.31	0.25	-0.35	-0.71	Matched[1971]
YGL242C		Putative protein of unknown function; deletion mutant is viable	Uncharacterized	chr7:44652-45197	44652-45197	99.4%	379.46	440.25	357.36	337.09	757.08	477.09	409.85	347.23	617.08	1.51	1.41	2.56	0.83	0.47	Frag>80[1972,1973]
YGL241W	KAP114	"Karyopherin, responsible for nuclear import of Spt15p, histones H2A and H2B, and Nap1p; amino terminus shows similarity to those of other importins, particularly Cse1p; localization is primarily nuclear"	Verified	chr7:45445-48459	45445-48459	98.9%	94.54	85.49	72.08	63.70	62.69	45.26	90.01	67.89	53.97	0.33	0.28	0.22	-0.33	-0.30	Matched[1974]
YGL240W	DOC1	"Processivity factor required for the ubiquitination activity of the anaphase promoting complex (APC), mediates the activity of the APC by contributing to substrate recognition; involved in cyclin proteolysis"	Verified	chr7:48613-49365	48613-49365	98.6%	22.89	28.28	18.85	24.24	20.20	21.55	25.58	21.55	20.87	0.09	0.09	0.09	-0.05	0.80	Covered/w/another[1975]
YGL238W	CSE1	"Nuclear envelope protein that mediates the nuclear export of importin alpha (Srp1p), homolog of metazoan CAS protein, required for accurate chromosome segregation"	Verified	chr7:49552-52434	49552-52434	99.2%	355.37	312.00	296.61	282.62	282.27	241.70	333.69	289.62	261.98	1.23	1.18	1.09	-0.14	0.33	Covered/w/another[1975]
YGL239C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified gene CSE1"	Dubious	chr7:49431-49745	49431-49745	98.5%	128.98	122.53	106.41	125.76	132.20	116.08	125.76	116.08	124.14	0.46	0.47	0.51	0.10	0.06	Covered/w/another[1975]
YGL237C	HAP2	"Subunit of the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression; contains sequences sufficient for both complex assembly and DNA binding"	Verified	chr7:52731-53528	52731-53528	97.1%	79.98	112.23	73.53	70.95	198.67	179.32	96.11	72.24	188.99	0.35	0.29	0.78	1.39	1.00	Covered/w/another[1975]
YGL235W		Putative protein of unknown function; potential Cdc28p substrate	Uncharacterized	chr7:55279-55815	55279-55815	98.5%	54.82	26.46	43.47	26.46	3.78	9.45	40.64	34.97	6.62	0.15	0.14	0.03	-2.40	0.03	Covered/w/another[1976]
YGL236C	MTO1	"Mitochondrial protein, forms a heterodimer complex with Mss1p that performs the 5-carboxymethylaminomethyl modification of the wobble uridine base in mitochondrial tRNAs; required for respiration in paromomycin-resistant 15S rRNA mutants"	Verified	chr7:53787-55796	53787-55796	98.8%	83.60	59.43	73.03	53.39	14.10	22.66	71.52	63.21	18.38	0.26	0.26	0.08	-1.78	-1.38	Matched[1976]
YGL234W	"ADE5,7"	"Bifunctional enzyme of the 'de novo' purine nucleotide biosynthetic pathway, contains aminoimidazole ribotide synthetase and glycinamide ribotide synthetase activities"	Verified	chr7:56482-58890	56482-58890	98.7%	1867.34	1141.60	1795.02	1304.32	230.42	125.30	1504.47	1549.67	177.86	5.55	6.29	0.74	-3.12	-2.59	Matched[1977]
YGL233W	SEC15	"Essential 113kDa subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, and Exo84p), which mediates polarized targeting of vesicles to active sites of exocytosis; Sec15p associates with Sec4p and vesicles"	Verified	chr7:59122-61854	59122-61854	99.0%	132.73	159.34	131.62	131.99	180.42	147.88	146.03	131.80	164.15	0.54	0.54	0.68	0.32	0.62	Matched[1978]
YGL232W	TAN1	"Putative tRNA acetyltransferase, RNA-binding protein required for the formation of the modified nucleoside N(4)-acetylcytidine in serine and leucine tRNAs but not required for the same modification in 18S rRNA"	Verified	chr7:62075-63002	62075-62131,62190-63002	98.7%	343.66	344.82	271.43	287.74	316.86	172.41	344.24	279.58	244.64	1.27	1.13	1.01	-0.19	-0.19	Matched[1979]
YGL231C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum	Uncharacterized	chr7:63048-63620	63048-63620	99.0%	608.02	534.00	567.48	477.60	484.65	289.03	571.01	522.54	386.84	2.11	2.12	1.60	-0.43	-0.47	Covered/w/another[1979]
YGL230C		Putative protein of unknown function; non-essential gene	Uncharacterized	chr7:63772-64215	63772-64215	99.2%	9.08	20.44	18.16	9.08	20.44	20.44	14.76	13.62	20.44	0.05	0.06	0.08	0.58	0.39	Matched[1980]
YGL229C	SAP4	"Protein required for function of the Sit4p protein phosphatase, member of a family of similar proteins that form complexes with Sit4p, including Sap155p, Sap185p, and Sap190p"	Verified	chr7:64503-66959	64503-66959	99.2%	100.55	135.44	106.30	96.04	151.86	123.95	118.00	101.17	137.90	0.44	0.41	0.57	0.45	0.66	Matched[1981]
YGL228W	SHE10	Putative glycosylphosphatidylinositol (GPI)-anchored protein of unknown function; overexpression causes growth arrest	Verified	chr7:67598-69331	67598-69331	98.5%	347.68	353.54	353.54	361.14	356.46	273.93	350.61	357.34	315.20	1.29	1.45	1.31	-0.18	0.23	Matched[1982]
YGL227W	VID30	"Protein involved in proteasome-dependent catabolite degradation of fructose-1,6-bisphosphatase (FBPase); shifts the balance of nitrogen metabolism toward the production of glutamate; localized to the nucleus and the cytoplasm"	Verified	chr7:69671-72547	69671-72547	97.9%	84.81	94.40	94.75	102.91	198.37	196.60	89.61	98.83	197.49	0.33	0.40	0.82	1.00	1.03	Matched[1983]
YGL226C-A	OST5	"Zeta subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes asparagine-linked glycosylation of newly synthesized proteins"	Verified	chr7:72748-73157	72748-72987,73137-73157	98.5%	739.30	669.26	677.04	723.74	525.29	451.36	704.28	700.39	488.33	2.60	2.84	2.02	-0.52	-0.14	Covered/w/another[1983]
YGL226W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the mitochondrion	Uncharacterized	chr7:73339-73710	73339-73710	98.0%	145.32	191.93	170.00	156.29	233.06	139.84	168.63	163.14	186.45	0.62	0.66	0.77	0.19	0.03	Matched[1984]
YGL225W	VRG4	Golgi GDP-mannose transporter; regulates Golgi function and glycosylation in Golgi	Verified	chr7:76893-77906	76893-77906	99.2%	1474.89	1673.79	1303.83	1251.12	429.64	318.25	1574.34	1277.47	373.94	5.81	5.19	1.55	-1.77	-1.74	Matched[1987]
YGL224C	SDT1	"Pyrimidine nucleotidase; overexpression suppresses the 6-AU sensitivity of transcription elongation factor S-II, as well as resistance to other pyrimidine derivatives"	Verified	chr7:78014-78856	78014-78856	99.2%	199.67	307.28	191.30	127.93	178.15	80.11	253.47	159.62	129.13	0.94	0.65	0.54	-0.31	-0.83	Covered/w/another[1988]
YGL223C	COG1	"Essential component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering complex that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments"	Verified	chr7:79111-80364	79111-80364	99.0%	156.23	172.33	115.96	120.79	132.07	69.25	164.28	118.38	100.66	0.61	0.48	0.42	-0.23	-0.15	Covered/w/another[1988]
YGL222C	EDC1	"RNA-binding protein, activates mRNA decapping directly by binding to the mRNA substrate and enhancing the activity of the decapping proteins Dcp1p and Dcp2p"	Verified	chr7:80658-81185	80658-81185	98.7%	218.72	289.71	203.37	234.07	320.41	335.76	254.22	218.72	328.08	0.94	0.89	1.36	0.58	1.33	Frag<80[1989]
YGL221C	NIF3	"Protein of unknown function, similar to Listeria monocytogenes major sigma factor (rpoD gene product); the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr7:81425-82291	81425-82291	98.9%	338.29	331.29	331.29	291.63	400.12	317.29	334.79	311.46	358.71	1.24	1.26	1.49	0.20	0.32	Matched[1990]
YGL220W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and the nucleus	Uncharacterized	chr7:82373-82735	82373-82735	98.3%	417.37	442.58	434.17	350.14	571.43	355.74	429.97	392.16	463.59	1.59	1.59	1.92	0.24	-0.43	Matched[1991]
YGL218W		"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; 93% of ORF overlaps the verified gene MDM34; deletion in cyr1 mutant results in loss of stress resistance"	Dubious	chr7:83649-84299	83649-84299	99.1%	136.43	187.60	164.34	145.74	189.15	213.95	162.02	155.04	201.55	0.60	0.63	0.84	0.38	0.33	Matched[1992]
YGL219C	MDM34	"Mitochondrial outer membrane protein, required for normal mitochondrial morphology and inheritance; localizes to dots on the mitochondrial surface near mtDNA nucleoids; interacts genetically with MDM31 and MDM32"	Verified	chr7:82877-84256	82877-84256	98.9%	177.97	243.89	179.44	202.14	281.97	242.42	210.93	190.79	262.20	0.78	0.77	1.09	0.46	0.54	Matched[1992]
YGL216W	KIP3	Kinesin-related motor protein involved in mitotic spindle positioning	Verified	chr7:84884-87301	84884-87301	98.6%	86.80	105.25	78.00	75.48	59.96	74.64	96.03	76.74	67.30	0.35	0.31	0.28	-0.19	0.36	Matched[1993]
YGL217C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF KIP3/YGL216W"	Dubious	chr7:84838-85179	84838-85179	98.4%	47.55	92.12	56.46	56.46	23.77	59.44	69.84	56.46	41.60	0.26	0.23	0.17	-0.44	-0.02	Covered/w/another[1993]
YGL215W	CLG1	Cyclin-like protein that interacts with Pho85p; has sequence similarity to G1 cyclins PCL1 and PCL2	Verified	chr7:87980-89338	87980-89338	99.2%	1103.24	1303.43	1000.93	1126.23	954.96	1168.49	1203.34	1063.58	1061.72	4.44	4.32	4.40	-0.00	0.58	Matched[1994]
YGL214W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; deletion mutation phenotype is likely due to the overlapping verified ORF SKI8/YGL213C"	Dubious	chr7:90011-90499	90011-90499	99.2%	265.91	259.73	272.09	239.11	197.89	189.64	262.82	255.60	193.76	0.97	1.04	0.80	-0.40	-0.36	Covered/w/another[1995]
YGL213C	SKI8	Protein involved in exosome mediated 3' to 5' mRNA degradation and translation inhibition of non-poly(A) mRNAs as well as double-strand break formation during meiotic recombination; required for repressing propagation of dsRNA viruses	Verified	chr7:90058-91251	90058-91251	99.0%	232.62	197.09	234.31	201.32	186.94	146.34	214.85	217.81	166.64	0.79	0.88	0.69	-0.39	-0.24	Matched[1995]
YGL212W	VAM7	Component of the vacuole SNARE complex involved in vacuolar morphogenesis; SNAP-25 homolog; functions with a syntaxin homolog Vam3p in vacuolar protein trafficking	Verified	chr7:91436-92386	91436-92386	98.0%	71.89	68.68	39.70	62.24	53.65	55.80	70.29	50.97	54.73	0.26	0.21	0.23	0.10	0.74	Covered/w/another[1996]
YGL211W	NCS6	"Protein required for thiolation of the uridine at the wobble position of Gln, Lys, and Glu tRNAs; has a role in urmylation and in invasive and pseudohyphal growth; inhibits replication of Brome mosaic virus in S. cerevisiae"	Verified	chr7:92516-93595	92516-93595	98.3%	196.77	161.93	167.58	132.75	114.86	104.50	179.35	150.16	109.68	0.66	0.61	0.45	-0.45	0.14	Covered/w/another[1996]
YGL210W	YPT32	"GTPase of the Ypt/Rab family, very similar to Ypt31p; involved in the exocytic pathway; mediates intra-Golgi traffic or the budding of post-Golgi vesicles from the trans-Golgi"	Verified	chr7:93797-94465	93797-94465	98.3%	250.79	246.23	238.63	153.51	117.04	56.24	248.51	196.07	86.64	0.92	0.80	0.36	-1.18	-0.40	Covered/w/another[1996]
YGL209W	MIG2	"Protein containing zinc fingers, involved in repression, along with Mig1p, of SUC2 (invertase) expression by high levels of glucose; binds to Mig1p-binding sites in SUC2 promoter"	Verified	chr7:95862-97010	95862-97010	98.7%	137.59	142.88	87.32	75.85	69.68	41.45	140.24	81.58	55.57	0.52	0.33	0.23	-0.55	-2.13	Covered/w/another[1997]
YGL208W	SIP2	One of three beta subunits of the Snf1 serine/threonine protein kinase complex involved in the response to glucose starvation; null mutants exhibit accelerated aging; N-myristoylprotein localized to the cytoplasm and the plasma membrane	Verified	chr7:97342-98589	97342-98589	98.6%	69.10	109.74	95.92	80.48	220.30	154.45	89.42	88.20	187.37	0.33	0.36	0.78	1.09	1.48	Covered/w/another[1997]
YGL207W	SPT16	"Subunit of the heterodimeric FACT complex (Spt16p-Pob3p), facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilizing and then reassembling nucleosome structure"	Verified	chr7:98973-102080	98973-102080	98.7%	438.29	327.17	396.58	367.90	284.81	273.08	382.73	382.24	278.94	1.41	1.55	1.16	-0.45	-0.10	Covered/w/another[1997]
YGL206C	CHC1	"Clathrin heavy chain, subunit of the major coat protein involved in intracellular protein transport and endocytosis; two heavy chains form the clathrin triskelion structural component; the light chain (CLC1) is thought to regulate function"	Verified	chr7:102547-107508	102547-107508	99.1%	369.83	348.47	345.02	364.95	332.81	457.31	359.15	354.98	395.06	1.33	1.44	1.64	0.15	0.78	Frag>80[1998,1999]
YGL205W	POX1	"Fatty-acyl coenzyme A oxidase, involved in the fatty acid beta-oxidation pathway; localized to the peroxisomal matrix"	Verified	chr7:108162-110408	108162-110408	98.8%	14.86	16.66	12.61	9.46	25.22	17.56	15.76	11.03	21.39	0.06	0.04	0.09	0.96	1.14	
YGL204C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr7:111704-112009	111704-112009	98.9%	89.23	66.10	62.79	42.96	112.37	79.32	77.66	52.88	95.84	0.29	0.21	0.40	0.86	0.59	Matched[2000]
YGL203C	KEX1	Protease involved in the processing of killer toxin and alpha factor precursor; cleaves Lys and Arg residues from the C-terminus of peptides and proteins	Verified	chr7:112479-114668	112479-114668	99.2%	217.17	251.22	232.81	195.54	188.64	183.58	234.19	214.18	186.11	0.86	0.87	0.77	-0.20	0.22	Frag>80[2001,2002]
YGL202W	ARO8	"Aromatic aminotransferase I, expression is regulated by general control of amino acid biosynthesis"	Verified	chr7:116063-117565	116063-117565	98.9%	939.92	1238.65	943.29	900.90	548.34	634.47	1089.29	922.09	591.40	4.02	3.74	2.45	-0.64	0.10	Matched[2004]
YGL201C	MCM6	Protein involved in DNA replication; component of the Mcm2-7 hexameric complex that binds chromatin as a part of the pre-replicative complex	Verified	chr7:117858-120911	117858-120911	98.7%	112.49	94.57	102.54	87.27	46.12	44.47	103.53	94.90	45.29	0.38	0.39	0.19	-1.07	-0.35	Matched[2005]
YGL200C	EMP24	"Integral membrane component of endoplasmic reticulum-derived COPII-coated vesicles, which function in ER to Golgi transport"	Verified	chr7:122699-123310	122699-123310	98.7%	1213.41	1332.60	1269.69	1301.15	1246.52	922.06	1273.00	1285.42	1084.29	4.70	5.22	4.49	-0.25	-0.33	Frag>80[2006,2007]
YGL198W	YIP4	"Protein that interacts with Rab GTPases, localized to late Golgi vesicles; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport"	Verified	chr7:123596-124303	123596-124303	98.6%	374.06	396.99	460.05	442.85	606.23	472.95	385.52	451.45	539.59	1.42	1.83	2.24	0.26	0.24	Matched[2008]
YGL199C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF YIP4/YGL198W"	Dubious	chr7:123577-124047	123577-124047	98.4%	353.73	375.30	457.27	381.77	558.64	450.80	364.52	419.52	504.72	1.35	1.70	2.09	0.27	-0.02	Matched[2008]
YGL197W	MDS3	"Protein with an N-terminal kelch-like domain, putative negative regulator of early meiotic gene expression; required, with Pmd1p, for growth under alkaline conditions"	Verified	chr7:124703-129166	124703-129166	98.8%	106.81	124.72	100.46	89.12	101.37	124.50	115.77	94.79	112.93	0.43	0.38	0.47	0.25	0.79	Covered/w/another[2009]
YGL196W	DSD1	"D-serine dehydratase (aka D-serine ammonia-lyase); converts D-serine to pyruvate and ammonia; specifc for D-serine, unlike the bacterial enzyme which recognizes both D-serine and L-serine as substrates"	Verified	chr7:129888-131174	129888-131174	98.8%	155.67	193.41	160.39	147.81	284.61	173.75	174.54	154.10	229.18	0.64	0.63	0.95	0.57	0.57	Covered/w/another[2009]
YGL195W	GCN1	"Positive regulator of the Gcn2p kinase activity, forms a complex with Gcn20p; proposed to stimulate Gcn2p activation by an uncharged tRNA"	Verified	chr7:131531-139549	131531-139549	98.9%	264.19	237.08	229.01	215.39	80.08	113.24	250.63	222.20	96.66	0.93	0.90	0.40	-1.20	-0.37	Frag>80[2010,2011]
YGL194C-A		"Putative protein of unknown function, identified based on comparisons of the genome sequences of six Saccharomyces species"	Uncharacterized	chr7:139725-139967	139725-139967	99.4%	178.08	78.69	144.95	86.97	186.37	128.39	128.39	115.96	157.38	0.47	0.47	0.65	0.44	NaN	Covered/w/another[2012]
YGL194C	HOS2	"Histone deacetylase required for gene activation via specific deacetylation of lysines in H3 and H4 histone tails; subunit of the Set3 complex, a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity"	Verified	chr7:140374-141732	140374-141732	99.1%	73.48	77.19	66.05	64.57	77.19	92.03	75.33	65.31	84.61	0.28	0.27	0.35	0.37	0.85	Matched[2012]
YGL193C		"Haploid-specific gene repressed by a1-alpha2, turned off in sir3 null strains, absence enhances the sensitivity of rad52-327 cells to campothecin almost 100-fold"	Uncharacterized	chr7:141922-142233	141922-142233	98.5%	208.21	224.48	240.75	136.64	230.99	104.11	216.35	188.69	167.55	0.80	0.77	0.69	-0.17	0.23	Covered/w/another[2013]
YGL192W	IME4	Probable mRNA N6-adenosine methyltransferase that is required for IME1 transcript accumulation and for sporulation; expression is induced in starved MATa/MAT alpha diploid cells	Verified	chr7:142252-144054	142252-144054	98.7%	146.65	157.88	132.04	121.36	145.52	100.01	152.27	126.70	122.77	0.56	0.51	0.51	-0.05	0.27	Matched[2013]
YGL191W	COX13	"Subunit VIa of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; not essential for cytochrome c oxidase activity but may modulate activity in response to ATP"	Verified	chr7:144814-145203	144814-145203	98.8%	1087.37	1022.49	1136.68	1235.29	2891.00	2000.87	1054.93	1185.99	2445.93	3.89	4.81	10.13	1.04	-0.00	Matched[2015]
YGL190C	CDC55	Non-essential regulatory subunit B of protein phosphatase 2A; has multiple roles in mitosis and protein biosynthesis; found in the nucleus of most cells but also at the bud neck (large-budded cells) and at the bud tip (small-budded cells)	Verified	chr7:145815-147395	145815-147395	99.5%	241.60	221.89	290.56	236.52	362.40	263.22	231.75	263.54	312.81	0.86	1.07	1.30	0.25	0.78	Matched[2017]
YGL189C	RPS26A	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps26Bp and has similarity to rat S26 ribosomal protein	Verified	chr7:148235-148973	148235-148604,148972-148973	73.1%	12621.90	11091.08	11098.44	8842.69	5181.23	3536.34	11856.49	9970.56	4358.79	43.77	40.47	18.06	-1.19	-2.77	Matched[2018]
YGL188C-A		Putative protein of unknown function	Uncharacterized	chr7:148830-148970	148830-148970	99.9%	49.72	99.44	56.82	42.62	14.21	28.41	74.58	49.72	21.31	0.28	0.20	0.09	-1.22	NaN	Matched[2018]
YGL188C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr7:149349-149522	149349-149522	99.3%	277.72	231.44	196.72	312.44	295.08	190.94	254.58	254.58	243.01	0.94	1.03	1.01	-0.07	0.16	Covered/w/another[2019]
YGL187C	COX4	"Subunit IV of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; N-terminal 25 residues of precursor are cleaved during mitochondrial import; phosphorylated"	Verified	chr7:149710-150532	149710-150189,150531-150532	99.1%	663.87	703.66	818.85	1028.27	963.35	592.67	683.77	923.56	778.01	2.52	3.75	3.22	-0.25	-0.58	Matched[2019]
YGL186C	TPN1	"Plasma membrane pyridoxine (vitamin B6) transporter; member of the purine-cytosine permease subfamily within the major facilitator superfamily; proton symporter with similarity to Fcy21p, Fcy2p, and Fcy22p"	Verified	chr7:151043-152782	151043-152782	99.0%	290.30	308.88	239.21	219.47	144.57	92.32	299.59	229.34	118.44	1.11	0.93	0.49	-0.95	-0.61	Matched[2020]
YGL185C		Putative protein with sequence similarity to hydroxyacid dehydrogenases; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr7:153173-154312	153173-154312	99.2%	50.40	91.95	54.82	53.05	145.89	113.17	71.18	53.93	129.53	0.26	0.22	0.54	1.26	1.29	Matched[2021]
YGL184C	STR3	"Cystathionine beta-lyase, converts cystathionine into homocysteine"	Verified	chr7:154621-156018	154621-156018	98.9%	7.95	18.80	10.12	5.06	14.46	17.35	13.38	7.59	15.91	0.05	0.03	0.07	1.07	1.32	Overlap[2021]
YGL183C	MND1	"Protein required for recombination and meiotic nuclear division; forms a complex with Hop2p, which is involved in chromosome pairing and repair of meiotic double-strand breaks"	Verified	chr7:156549-157291	156549-157205,157289-157291	99.5%	7.61	6.09	3.05	3.05	15.23	3.05	6.85	3.05	9.14	0.03	0.01	0.04	1.58	0.83	
YGL182C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF MND1/YGL183C"	Dubious	chr7:157279-157602	157279-157602	98.5%	3.13	6.27	0.00	3.13	6.27	6.27	4.70	1.57	6.27	0.02	0.01	0.03	2.00	0.88	
YGL181W	GTS1	"Protein containing a zinc-finger in the N-terminus and a long Gln-rich region in the C-terminus; regulates ultradian rhythm, cell size, cell cycle, lifespan, sporulation, heat tolerance, and multidrug transport"	Verified	chr7:157912-159102	157912-159102	98.0%	218.55	231.40	240.83	249.40	310.25	216.83	224.98	245.12	263.54	0.83	0.99	1.09	0.10	0.73	Matched[2022]
YGL180W	ATG1	"Protein serine/threonine kinase, required for autophagy and for the cytoplasm-to-vacuole targeting (Cvt) pathway"	Verified	chr7:160071-162764	160071-162764	98.8%	29.31	35.32	22.17	27.43	63.88	67.26	32.32	24.80	65.57	0.12	0.10	0.27	1.40	1.86	Covered[2023]
YGL179C	TOS3	"Protein kinase, related to and functionally redundant with Elm1p and Sak1p for the phosphorylation and activation of Snf1p; functionally orthologous to LKB1, a mammalian kinase associated with Peutz-Jeghers cancer-susceptibility syndrome"	Verified	chr7:163415-165097	163415-165097	99.0%	36.62	49.22	42.02	33.62	91.85	69.63	42.92	37.82	80.74	0.16	0.15	0.33	1.09	1.51	Covered[2024]
YGL178W	MPT5	"Member of the Puf family of RNA-binding proteins; binds to mRNAs encoding chromatin modifiers and spindle pole body components; involved in longevity, maintenance of cell wall integrity, and sensitivity to and recovery from pheromone arrest"	Verified	chr7:167358-170577	167358-167360,168001-170577	99.1%	125.92	109.10	96.98	85.64	91.90	144.30	117.51	91.31	118.10	0.43	0.37	0.49	0.37	1.42	Matched[2025]
YGL177W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr7:167565-167912	167565-167912	98.9%	17.42	14.52	11.62	8.71	23.23	40.66	15.97	10.16	31.95	0.06	0.04	0.13	1.65	1.66	Covered/w/another[2025]
YGL176C		Putative protein of unknown function; deletion mutant is viable and has no detectable phenotype	Uncharacterized	chr7:171421-173085	171421-173085	99.1%	96.99	111.54	78.81	76.38	76.99	69.11	104.27	77.59	73.05	0.38	0.31	0.30	-0.09	0.44	Covered/w/another[2026]
YGL175C	SAE2	Protein with a role in accurate meiotic and mitotic double-strand break repair; phosphorylated in response to DNA damage and required for normal resistance to DNA-damaging agents	Verified	chr7:173291-174328	173291-174328	99.1%	36.93	34.99	34.99	35.96	25.27	27.21	35.96	35.47	26.24	0.13	0.14	0.11	-0.43	0.77	Covered/w/another[2026]
YGL174W	BUD13	"Subunit of the RES complex, which is required for nuclear pre-mRNA retention and splicing; involved in bud-site selection; diploid mutants display a unipolar budding pattern instead of the wild-type bipolar pattern"	Verified	chr7:174551-175351	174551-175351	98.3%	69.88	63.53	90.21	53.36	83.86	63.53	66.71	71.79	73.69	0.25	0.29	0.31	0.04	0.15	Matched[2027]
YGL173C	KEM1	"Evolutionarily-conserved 5'-3' exonuclease component of cytoplasmic processing (P) bodies involved in mRNA decay; plays a role in microtubule-mediated processes, filamentous growth, ribosomal RNA maturation, and telomere maintenance"	Verified	chr7:175533-180119	175533-180119	99.2%	509.47	437.38	467.93	455.40	255.61	347.27	473.42	461.67	301.44	1.75	1.87	1.25	-0.61	0.07	Frag>80[2028,2029,2030]
YGL172W	NUP49	"Subunit of the Nsp1p-Nup57p-Nup49p-Nic96p subcomplex of the nuclear pore complex (NPC), required for nuclear export of ribosomes"	Verified	chr7:180706-182124	180706-182124	98.8%	236.19	207.65	249.03	232.62	254.03	228.34	221.92	240.83	241.18	0.82	0.98	1.00	0.00	0.64	Matched[2031]
YGL171W	ROK1	ATP-dependent RNA helicase of the DEAD box family; required for 18S rRNA synthesis	Verified	chr7:182396-184090	182396-184090	98.5%	173.67	95.22	107.80	85.04	11.98	0.60	134.45	96.42	6.29	0.50	0.39	0.03	-3.94	-4.81	Matched[2032]
YGL170C	SPO74	"Component of the meiotic outer plaque of the spindle pole body, involved in modifying the meiotic outer plaque that is required prior to prospore membrane formation"	Verified	chr7:184159-185400	184159-185400	99.3%	16.22	5.68	5.68	4.06	7.30	5.68	10.95	4.87	6.49	0.04	0.02	0.03	0.42	0.80	Overlap[2032]
YGL169W	SUA5	Protein required for respiratory growth; null mutation suppresses the Cyc1p translation defect caused by the presence of an aberrant ATG codon upstream of the correct start	Verified	chr7:186065-187345	186065-187345	98.8%	148.53	90.07	91.65	77.43	14.22	10.27	119.30	84.54	12.25	0.44	0.34	0.05	-2.79	-3.46	Matched[2033]
YGL168W	HUR1	Protein required for hydroxyurea resistance; has possible roles in DNA replication and maintenance of proper telomere length	Verified	chr7:187470-187802	187470-187802	98.9%	595.22	586.11	613.44	488.93	646.84	318.87	590.66	551.18	482.85	2.18	2.24	2.00	-0.19	-0.16	Covered/w/another[2034]
YGL167C	PMR1	High affinity Ca2+/Mn2+ P-type ATPase required for Ca2+ and Mn2+ transport into Golgi; involved in Ca2+ dependent protein sorting and processing; mutations in human homolog ATP2C1 cause acantholytic skin condition Hailey-Hailey disease	Verified	chr7:187622-190474	187622-190474	99.1%	336.49	319.86	327.65	294.03	226.10	206.64	328.18	310.84	216.37	1.21	1.26	0.90	-0.52	0.03	Matched[2034]
YGL166W	CUP2	Copper-binding transcription factor; activates transcription of the metallothionein genes CUP1-1 and CUP1-2 in response to elevated copper concentrations	Verified	chr7:191135-191812	191135-191812	98.3%	73.50	83.99	78.00	58.50	197.99	110.99	78.75	68.25	154.49	0.29	0.28	0.64	1.18	1.12	Covered/w/another[2035]
YGL165C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF CUP2/YGL166W"	Dubious	chr7:191404-191982	191404-191982	98.8%	89.15	103.14	82.16	73.42	216.77	118.87	96.15	77.79	167.82	0.35	0.32	0.70	1.11	0.29	Covered/w/another[2035]
YGL164C	YRB30	"RanGTP-binding protein, inhibits RanGAP1 (Rna1p)-mediated GTP hydrolysis of RanGTP (Gsp1p); shares similarity to proteins in other fungi but not in higher eukaryotes"	Verified	chr7:191984-193306	191984-193306	99.3%	133.94	132.42	116.43	114.15	156.77	112.63	133.18	115.29	134.70	0.49	0.47	0.56	0.22	0.19	Covered/w/another[2035]
YGL163C	RAD54	"DNA-dependent ATPase, stimulates strand exchange by modifying the topology of double-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; member of the SWI/SNF family"	Verified	chr7:193713-196409	193713-196409	99.1%	86.41	98.38	70.33	62.10	103.62	102.12	92.40	66.21	102.87	0.34	0.27	0.43	0.64	0.94	Covered/w/another[2036]
YGL162W	SUT1	Transcription factor of the Zn[II]2Cys6 family involved in sterol uptake; involved in induction of hypoxic gene expression	Verified	chr7:198144-199043	198144-199043	98.9%	66.29	110.10	68.53	61.79	48.31	43.82	88.19	65.16	46.06	0.33	0.26	0.19	-0.50	-0.17	Covered/w/another[2036]
YGL161C	YIP5	"Protein that interacts with Rab GTPases, localized to late Golgi vesicles; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport"	Verified	chr7:199216-200148	199216-200148	99.1%	386.14	328.81	332.06	359.10	589.48	350.44	357.47	345.58	469.96	1.32	1.40	1.95	0.44	0.21	Matched[2037]
YGL160W		"Putative protein of uknown function with sequence similarity to iron/copper reductases (FRE1-8), possibly involved in iron homeostasis; may interact with ribosomes, based on co-purification experiments"	Verified	chr7:200567-202279	200567-202279	99.0%	171.01	172.19	158.04	156.86	227.62	167.47	171.60	157.45	197.55	0.63	0.64	0.82	0.33	0.62	Matched[2038]
YGL159W		Putative protein of unknown function; deletion mutant has no detectable phenotype	Uncharacterized	chr7:202727-203839	202727-203839	99.1%	137.80	128.73	115.14	116.95	131.45	106.07	133.27	116.04	118.76	0.49	0.47	0.49	0.03	-0.02	Matched[2039]
YGL158W	RCK1	Protein kinase involved in the response to oxidative stress; identified as suppressor of S. pombe cell cycle checkpoint mutations	Verified	chr7:207038-208576	207038-208576	98.7%	3.95	6.58	5.27	4.61	7.24	4.61	5.27	4.94	5.93	0.02	0.02	0.02	0.26	0.93	
YGL157W		"Oxidoreductase, catalyzes NADPH-dependent reduction of the bicyclic diketone bicyclo[2.2.2]octane-2,6-dione (BCO2,6D) to the chiral ketoalcohol (1R,4S,6S)-6-hydroxybicyclo[2.2.2]octane-2-one (BCO2one6ol)"	Verified	chr7:209011-210054	209011-210054	98.9%	298.34	229.57	256.69	192.76	263.47	198.57	263.95	224.72	231.02	0.97	0.91	0.96	0.04	0.15	Matched[2041]
YGL156W	AMS1	"Vacuolar alpha mannosidase, involved in free oligosaccharide (fOS) degradation; delivered to the vacuole in a novel pathway separate from the secretory pathway"	Verified	chr7:210421-213672	210421-213672	98.8%	56.64	95.85	59.75	56.33	227.18	247.10	76.25	58.04	237.14	0.28	0.24	0.98	2.03	2.30	Matched[2042]
YGL155W	CDC43	"Beta subunit of geranylgeranyltransferase type I, catalyzes geranylgeranylation to the cysteine residue in proteins containing a C-terminal CaaX sequence ending in Leu or Phe; has substrates important for morphogenesis"	Verified	chr7:214086-215216	214086-215216	98.8%	184.33	160.17	173.59	134.22	116.32	85.00	172.25	153.90	100.66	0.64	0.62	0.42	-0.61	-0.29	Covered/w/another[2043]
YGL154C	LYS5	Phosphopantetheinyl transferase involved in lysine biosynthesis; converts inactive apo-form of Lys2p (alpha-aminoadipate reductase) into catalytically active holo-form by posttranslational addition of phosphopantetheine	Verified	chr7:215283-216101	215283-216101	99.1%	110.87	144.13	92.39	67.75	149.05	66.52	127.50	80.07	107.79	0.47	0.33	0.45	0.43	0.02	Covered/w/another[2043]
YGL153W	PEX14	"Peroxisomal membrane peroxin that is a central component of the peroxisomal protein import machinery; interacts with both PTS1 (Pex5p) and PTS2 (Pex7p), peroxisomal matrix protein signal recognition factors and membrane receptor Pex13p"	Verified	chr7:216278-217303	216278-217303	98.3%	171.50	169.52	152.66	180.42	250.81	171.50	170.51	166.54	211.15	0.63	0.68	0.87	0.34	0.43	Covered/w/another[2043]
YGL152C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF PEX14/YGL153W"	Dubious	chr7:216697-217374	216697-217374	98.4%	167.90	172.39	161.90	169.39	262.34	179.89	170.14	165.65	221.11	0.63	0.67	0.92	0.42	0.21	Covered/w/another[2043]
YGL151W	NUT1	"Component of the RNA polymerase II mediator complex, which is required for transcriptional activation and also has a role in basal transcription"	Verified	chr7:217529-220927	217529-220927	99.1%	112.80	130.61	114.28	105.08	127.94	124.97	121.70	109.68	126.45	0.45	0.45	0.52	0.21	0.51	Matched[2044]
YGL149W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF INO80/YGL150C."	Dubious	chr7:225577-225882	225577-225882	99.5%	59.11	42.69	36.12	32.84	39.41	52.55	50.90	34.48	45.98	0.19	0.14	0.19	0.42	-0.13	Covered/w/another[2045]
YGL150C	INO80	"ATPase that forms a large complex, containing actin and several actin-related proteins, that has chromatin remodeling activity and 3' to 5' DNA helicase activity in vitro; shows similarity to the Snf2p family of ATPases"	Verified	chr7:221109-225578	221109-225578	99.3%	148.97	134.78	123.28	114.94	97.36	106.60	141.88	119.11	101.98	0.52	0.48	0.42	-0.22	0.54	Frag>80[2045,2046]
YGL148W	ARO2	"Bifunctional chorismate synthase and flavin reductase, catalyzes the conversion of 5-enolpyruvylshikimate 3-phosphate (EPSP) to form chorismate, which is a precursor to aromatic amino acids"	Verified	chr7:226404-227534	226404-227534	98.5%	1234.01	1092.21	1105.68	996.19	284.50	215.39	1163.11	1050.93	249.94	4.29	4.27	1.04	-2.07	-0.66	Matched[2047]
YGL147C	RPL9A	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl9Bp and has similarity to E. coli L6 and rat L9 ribosomal proteins"	Verified	chr7:227759-228334	227759-228334	53.6%	9366.64	6533.96	7833.63	6780.28	1552.46	1160.30	7950.30	7306.96	1356.38	29.35	29.66	5.62	-2.43	-3.39	Frag>80[2048,2049]
YGL146C		"Putative protein of unknown function, contains two putative transmembrane spans, shows no significant homology to any other known protein sequence, YGL146C is not an essential gene"	Uncharacterized	chr7:228756-229691	228756-229691	99.1%	25.87	38.80	34.49	34.49	49.58	32.34	32.34	34.49	40.96	0.12	0.14	0.17	0.25	0.50	Matched[2050]
YGL145W	TIP20	"Peripheral membrane protein required for fusion of COPI vesicles with the ER, prohibits back-fusion of COPII vesicles with the ER, may act as a sensor for vesicles at the ER membrane; interacts with Sec20p"	Verified	chr7:230248-232353	230248-232353	99.0%	128.54	137.65	117.03	94.00	84.41	51.32	133.09	105.52	67.87	0.49	0.43	0.28	-0.64	-0.51	Covered/w/another[2051]
YGL144C	ROG1	Protein with putative serine active lipase domain	Verified	chr7:232455-234512	232455-234512	99.1%	51.50	51.01	26.49	24.52	19.13	16.19	51.25	25.50	17.66	0.19	0.10	0.07	-0.53	-0.28	Covered/w/another[2051]
YGL143C	MRF1	"Mitochondrial translation release factor, involved in stop codon recognition and hydrolysis of the peptidyl-tRNA bond during mitochondrial translation; lack of MRF1 causes mitochondrial genome instability"	Verified	chr7:234722-235963	234722-235963	99.1%	121.02	136.46	96.66	94.22	113.71	68.23	128.74	95.44	90.97	0.48	0.39	0.38	-0.07	0.00	Covered/w/another[2051]
YGL142C	GPI10	"Integral membrane protein involved in glycosylphosphatidylinositol (GPI) anchor synthesis; putative alpha 1,2 mannosyltransferase required for addition of the third mannose onto the GPI core structure; human PIG-Bp is a functional homolog"	Verified	chr7:236274-238124	236274-238124	98.9%	156.21	153.48	129.99	137.09	136.54	97.77	154.84	133.54	117.15	0.57	0.54	0.49	-0.19	0.24	Covered/w/another[2051]
YGL141W	HUL5	"Protein with similarity to hect domain E3 ubiquitin-protein ligases, not essential for viability"	Verified	chr7:238358-241090	238358-241090	98.8%	64.07	96.67	74.81	80.00	170.37	152.59	80.37	77.41	161.48	0.30	0.31	0.67	1.06	1.12	Matched[2052]
YGL140C		Putative protein of unknown function; non-essential gene; contains multiple predicted transmembrane domains	Uncharacterized	chr7:241358-245017	241358-245017	99.1%	124.40	119.16	109.51	97.09	81.92	89.09	121.78	103.30	85.51	0.45	0.42	0.35	-0.27	0.52	Frag>80[2053]
YGL139W	FLC3	"Putative FAD transporter, similar to Flc1p and Flc2p; localized to the ER"	Verified	chr7:245721-248129	245721-248129	98.9%	174.52	154.81	153.97	149.77	90.20	73.84	164.67	151.87	82.02	0.61	0.62	0.34	-0.89	-0.49	Matched[2054]
YGL138C		Putative protein of unknown function; has no significant sequence similarity to any known protein	Uncharacterized	chr7:248499-249536	248499-249536	99.2%	0.97	0.97	0.00	1.94	0.00	0.00	0.97	0.97	0.00	0.00	0.00	0.00	-Inf	-0.12	
YGL137W	SEC27	"Essential beta'-coat protein of the COPI coatomer, involved in ER-to-Golgi and Golgi-to-ER transport; contains WD40 domains that mediate cargo selective interactions; 45% sequence identity to mammalian beta'-COP"	Verified	chr7:249874-252743	249874-249891,250092-252743	98.6%	600.39	464.44	557.48	536.97	352.79	404.06	532.41	547.22	378.42	1.97	2.22	1.57	-0.53	-0.16	Matched[2055]
YGL136C	MRM2	"Mitochondrial 2' O-ribose methyltransferase, required for methylation of U(2791) in 21S rRNA; MRM2 deletion confers thermosensitive respiration and loss of mitochondrial DNA; has similarity to Spb1p and Trm7p, and to E. coli FtsJ/RrmJ"	Verified	chr7:252902-253864	252902-253864	99.2%	103.68	147.67	127.77	84.83	180.14	107.87	125.68	106.30	144.00	0.46	0.43	0.60	0.44	0.32	Matched[2056]
YGL135W	RPL1B	"N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl1Ap and has similarity to E. coli L1 and rat L10a ribosomal proteins; rpl1a rpl1b double null mutation is lethal"	Verified	chr7:254646-255299	254646-255299	6.5%	7086.61	6118.11	6992.13	4181.10	1440.94	1133.86	6602.36	5586.61	1287.40	24.37	22.68	5.33	-2.12	-2.01	Frag<80[2057,2058,2059,2060]
YGL134W	PCL10	"Pho85p cyclin; recruits, activates, and targets Pho85p cyclin-dependent protein kinase to its substrate"	Verified	chr7:255668-256969	255668-256969	98.7%	99.64	108.20	77.07	77.07	69.28	47.48	103.92	77.07	58.38	0.38	0.31	0.24	-0.40	-0.03	Matched[2061]
YGL133W	ITC1	"Component of the ATP-dependent Isw2p-Itc1p chromatin remodeling complex, required for repression of a-specific genes, repression of early meiotic genes during mitotic growth, and repression of INO1"	Verified	chr7:257712-261506	257712-261506	98.6%	117.28	110.87	92.70	87.09	132.51	157.35	114.07	89.90	144.93	0.42	0.36	0.60	0.69	1.01	Matched[2062]
YGL132W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene SNT2/YGL131C"	Dubious	chr7:261585-261920	261585-261920	98.9%	54.16	78.23	72.22	78.23	87.26	81.24	66.20	75.23	84.25	0.24	0.31	0.35	0.16	0.25	Covered/w/another[2063]
YGL131C	SNT2	DNA binding protein with similarity to the S. pombe Snt2 protein	Verified	chr7:261653-265864	261653-265864	99.3%	38.27	38.75	32.05	35.64	50.47	70.32	38.51	33.85	60.40	0.14	0.14	0.25	0.84	0.89	Matched[2063]
YGL130W	CEG1	"Alpha (guanylyltransferase) subunit of the mRNA capping enzyme, a heterodimer (the other subunit is CET1, an RNA 5'-triphophatase) involved in adding the 5' cap to mRNA; the mammalian enzyme is a single bifunctional polypeptide"	Verified	chr7:266150-267529	266150-267529	98.6%	141.09	127.86	146.97	130.07	135.21	102.88	134.48	138.52	119.04	0.50	0.56	0.49	-0.22	0.07	Covered/w/another[2064]
YGL129C	RSM23	"Mitochondrial ribosomal protein of the small subunit, has similarity to mammalian apoptosis mediator proteins; null mutation prevents induction of apoptosis by overproduction of metacaspase Mca1p"	Verified	chr7:267728-269194	267728-269194	99.1%	158.14	167.08	177.39	193.89	191.14	189.08	162.61	185.64	190.11	0.60	0.75	0.79	0.03	0.41	Covered/w/another[2064]
YGL128C	CWC23	"Component of a complex containing Cef1p, putatively involved in pre-mRNA splicing; has similarity to E. coli DnaJ and other DnaJ-like proteins and to S. pombe Cwf23p"	Verified	chr7:269299-270150	269299-270150	98.6%	60.73	65.49	57.15	48.82	51.20	53.58	63.11	52.99	52.39	0.23	0.22	0.22	-0.02	-0.02	Covered/w/another[2064]
YGL127C	SOH1	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; involved in telomere maintenance; conserved with other metazoan MED31 subunits	Verified	chr7:270398-270781	270398-270781	98.5%	227.26	272.19	224.62	182.34	362.03	240.48	249.72	203.48	301.26	0.92	0.83	1.25	0.57	0.74	Covered/w/another[2064]
YGL126W	SCS3	"Protein required for inositol prototrophy, appears to be involved in the synthesis of inositol phospholipids from inositol but not in the control of inositol synthesis"	Verified	chr7:271003-272145	271003-272145	98.1%	200.62	237.18	202.41	162.28	320.11	217.57	218.90	182.35	268.84	0.81	0.74	1.11	0.56	0.43	Covered/w/another[2065]
YGL125W	MET13	"Isozyme of methylenetetrahydrofolate reductase, catalyzes the reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate in the methionine biosynthesis pathway"	Verified	chr7:272526-274328	272526-274328	98.7%	55.61	110.10	71.91	62.36	105.61	127.52	82.86	67.13	116.56	0.31	0.27	0.48	0.80	1.18	Covered/w/another[2065]
YGL124C	MON1	"Protein required for fusion of cvt-vesicles and autophagosomes with the vacuole; associates, as a complex with Ccz1p, with a perivacuolar compartment; potential Cdc28p substrate"	Verified	chr7:274786-276720	274786-276720	99.3%	57.77	67.66	51.00	37.47	70.26	51.00	62.71	44.24	60.63	0.23	0.18	0.25	0.45	0.39	Covered/w/another[2065]
YGL123W	RPS2	"Protein component of the small (40S) subunit, essential for control of translational accuracy; has similarity to E. coli S5 and rat S2 ribosomal proteins"	Verified	chr7:277623-278387	277623-278387	98.6%	14105.95	11812.41	12867.70	11715.63	2115.89	1686.35	12959.18	12291.67	1901.12	47.84	49.89	7.88	-2.69	-3.99	Frag>80[2066,2067,2068]
YGL123C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene RPS2/YGL123W"	Dubious	chr7:277640-277870	277640-277870	98.3%	11960.35	10281.94	11074.89	10422.91	1713.66	1493.39	11121.15	10748.90	1603.52	41.05	43.63	6.64	-2.74	NaN	Matched[2066]
YGL122C	NAB2	Nuclear polyadenylated RNA-binding protein; autoregulates mRNA levels; related to human hnRNPs; has nuclear localization signal sequence that binds to Kap104p; required for poly(A) tail length control and nuclear mRNA export	Verified	chr7:278952-280529	278952-280529	93.0%	235.69	251.36	333.79	311.99	246.59	289.51	243.53	322.89	268.05	0.90	1.31	1.11	-0.27	0.07	Matched[2069]
YGL121C	GPG1	Proposed gamma subunit of the heterotrimeric G protein that interacts with the receptor Grp1p; involved in regulation of pseudohyphal growth; requires Gpb1p or Gpb2p to interact with Gpa2p	Verified	chr7:280783-281163	280783-281163	99.1%	66.24	535.22	108.63	135.13	922.06	540.52	300.73	121.88	731.29	1.11	0.49	3.03	2.58	1.87	Matched[2070]
YGL120C	PRP43	"RNA helicase in the DEAH-box family, functions in both RNA polymerase I and polymerase II transcript metabolism, involved in release of the lariat-intron from the spliceosome"	Verified	chr7:281640-283943	281640-283943	98.9%	423.38	244.81	292.63	253.59	46.07	44.75	334.10	273.11	45.41	1.23	1.11	0.19	-2.59	-1.72	Frag>80[2071,2072]
YGL119W	ABC1	"Protein required for ubiquinone (coenzyme Q) biosynthesis and for respiratory growth; exhibits genetic interaction with COQ9, suggesting a common function; similar to prokaryotic proteins involved in early steps of ubiquinone biosynthesis"	Verified	chr7:284448-285953	284448-285953	98.6%	94.28	109.76	93.60	98.99	88.89	82.83	102.02	96.30	85.86	0.38	0.39	0.36	-0.17	0.33	Matched[2073]
YGL118C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr7:288020-288457	288020-288457	99.3%	9.20	9.20	6.90	4.60	0.00	2.30	9.20	5.75	1.15	0.03	0.02	0.00	-2.32	-0.39	Overlap[2074]
YGL117W		Putative protein of unknown function	Uncharacterized	chr7:288518-289315	288518-289315	98.9%	97.56	461.17	102.62	122.90	68.42	45.61	279.36	112.76	57.01	1.03	0.46	0.24	-0.98	-1.15	Matched[2074]
YGL116W	CDC20	"Cell-cycle regulated activator of anaphase-promoting complex/cyclosome (APC/C), which is required for metaphase/anaphase transition; directs ubiquitination of mitotic cyclins, Pds1p, and other anaphase inhibitors; potential Cdc28p substrate"	Verified	chr7:289812-291644	289812-291644	98.7%	134.88	123.27	114.98	103.37	112.22	86.79	129.08	109.18	99.50	0.48	0.44	0.41	-0.13	0.26	Matched[2075]
YGL115W	SNF4	"Activating gamma subunit of the AMP-activated Snf1p kinase complex (contains Snf1p and a Sip1p/Sip2p/Gal83p family member); activates glucose-repressed genes, represses glucose-induced genes; role in sporulation, and peroxisome biogenesis"	Verified	chr7:292036-293004	292036-293004	98.9%	364.17	352.70	387.13	326.61	688.70	432.00	358.43	356.87	560.35	1.32	1.45	2.32	0.65	0.71	Matched[2076]
YGL114W		Putative protein of unknown function; predicted member of the oligopeptide transporter (OPT) family of membrane transporters	Uncharacterized	chr7:293463-295640	293463-295640	98.7%	133.95	135.35	125.11	106.97	63.72	57.21	134.65	116.04	60.46	0.50	0.47	0.25	-0.94	-0.40	Matched[2077]
YGL113W	SLD3	"Protein involved in the initiation of DNA replication, required for proper assembly of replication proteins at the origins of replication; interacts with Cdc45p"	Verified	chr7:295935-297941	295935-297941	98.7%	79.77	58.06	56.04	59.07	53.01	37.36	68.91	57.56	45.19	0.25	0.23	0.19	-0.35	0.33	Matched[2078]
YGL112C	TAF6	"Subunit (60 kDa) of TFIID and SAGA complexes, involved in transcription initiation of RNA polymerase II and in chromatin modification, similar to histone H4"	Verified	chr7:298181-299731	298181-299731	99.1%	202.92	180.15	177.55	188.61	130.72	108.61	191.53	183.08	119.67	0.71	0.74	0.50	-0.61	-0.22	Matched[2079]
YGL111W	NSA1	"Constituent of 66S pre-ribosomal particles, involved in 60S ribosomal subunit biogenesis"	Verified	chr7:299981-301372	299981-301372	98.6%	186.58	110.78	143.58	119.53	32.07	18.22	148.68	131.56	25.15	0.55	0.53	0.10	-2.39	-1.65	Matched[2080]
YGL110C	CUE3	"Protein of unknown function; has a CUE domain that binds ubiquitin, which may facilitate intramolecular monoubiquitination"	Verified	chr7:301540-303414	301540-303414	99.4%	132.04	149.75	118.08	118.08	159.95	99.83	140.89	118.08	129.89	0.52	0.48	0.54	0.14	0.21	Matched[2081]
YGL109W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the uncharacterized gene YGL108C"	Dubious	chr7:303516-303839	303516-303839	99.3%	115.03	189.64	211.40	180.31	338.86	248.70	152.33	195.85	293.78	0.56	0.80	1.22	0.58	0.01	Matched[2082]
YGL108C		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery	Uncharacterized	chr7:303652-304074	303652-304074	99.4%	137.92	206.88	183.10	183.10	340.04	230.65	172.40	183.10	285.35	0.64	0.74	1.18	0.64	0.65	Matched[2082]
YGL107C	RMD9	Mitochondrial protein required for respiratory growth; mutant phenotype and genetic interactions suggest a role in delivering mt mRNAs to ribosomes; located on matrix face of the inner membrane and loosely associated with mitoribosomes	Verified	chr7:304336-306276	304336-306276	99.1%	127.86	106.03	104.47	96.67	111.22	68.09	116.94	100.57	89.66	0.43	0.41	0.37	-0.17	0.11	Matched[2083]
YGL106W	MLC1	"Essential light chain for Myo1p, light chain for Myo2p; stabilizes Myo2p by binding to the neck region; interacts with Myo1p, Iqg1p, and Myo2p to coordinate formation and contraction of the actomyosin ring with targeted membrane deposition"	Verified	chr7:306563-307012	306563-307012	98.0%	1013.61	1088.44	952.38	909.30	1077.10	673.47	1051.02	930.84	875.28	3.88	3.78	3.63	-0.09	-0.12	Matched[2084]
YGL105W	ARC1	"Protein that binds tRNA and methionyl- and glutamyl-tRNA synthetases (Mes1p and Gus1p), delivering tRNA to them, stimulating catalysis, and ensuring their localization to the cytoplasm; also binds quadruplex nucleic acids"	Verified	chr7:307440-308570	307440-308570	98.6%	1860.51	1648.80	1630.86	1734.92	1206.55	965.24	1754.65	1682.89	1085.89	6.48	6.83	4.50	-0.63	-0.40	Matched[2085]
YGL104C	VPS73	Mitochondrial protein; mutation affects vacuolar protein sorting; putative transporter; member of the sugar porter family	Verified	chr7:308716-310176	308716-310176	99.0%	86.38	153.42	114.72	117.48	322.04	261.22	119.90	116.10	291.63	0.44	0.47	1.21	1.33	0.95	Matched[2086]
YGL103W	RPL28	"Ribosomal protein of the large (60S) ribosomal subunit, has similarity to E. coli L15 and rat L27a ribosomal proteins; may have peptidyl transferase activity; can mutate to cycloheximide resistance"	Verified	chr7:310970-311930	310970-311018,311530-311930	98.4%	17462.75	14146.73	15408.58	13006.77	6304.74	5320.54	15804.74	14207.68	5812.64	58.34	57.67	24.08	-1.29	-2.03	Matched[2087]
YGL102C		Dubious open reading frame unlikely to encode a functional protein; overlaps 3' end of essential RPL28 gene encoding a large subunit ribosomal protein	Dubious	chr7:311508-311936	311508-311936	98.4%	18037.30	14712.58	15863.44	13343.86	6467.09	5410.95	16374.94	14603.65	5939.02	60.45	59.28	24.61	-1.30	0.01	Matched[2087]
YGL101W		Putative protein of unknown function; non-essential gene with similarity to YBR242W; interacts with the DNA helicase Hpr5p	Uncharacterized	chr7:312196-312843	312196-312843	98.8%	345.09	268.58	306.05	249.84	115.55	56.21	306.83	277.94	85.88	1.13	1.13	0.36	-1.69	-1.81	Matched[2088]
YGL100W	SEH1	"Nuclear pore protein that is part of the evolutionarily conserved Nup84p complex (Nup84p, Nup85p, Nup120p, Nup145p, and Seh1p); homologous to Sec13p"	Verified	chr7:313237-314286	313237-314286	98.7%	342.47	337.65	342.47	293.27	240.21	203.55	340.06	317.87	221.88	1.26	1.29	0.92	-0.52	-0.19	Matched[2089]
YGL099W	LSG1	Putative GTPase involved in 60S ribosomal subunit biogenesis; required for the release of Nmd3p from 60S subunits in the cytoplasm	Verified	chr7:314634-316556	314634-316556	98.6%	249.38	153.43	183.48	148.15	37.43	22.67	201.41	165.82	30.05	0.74	0.67	0.12	-2.46	-2.08	Matched[2090]
YGL098W	USE1	"Essential SNARE protein localized to the ER, involved in retrograde traffic from the Golgi to the ER; forms a complex with the SNAREs Sec22p, Sec20p and Ufe1p"	Verified	chr7:317345-318082	317345-318082	98.5%	112.84	144.49	148.62	121.09	228.43	115.59	128.66	134.85	172.01	0.47	0.55	0.71	0.35	0.59	Covered[2091]
YGL097W	SRM1	"Nucleotide exchange factor for Gsp1p, localizes to the nucleus, required for nucleocytoplasmic trafficking of macromolecules; suppressor of the pheromone response pathway; potentially phosphorylated by Cdc28p"	Verified	chr7:321785-323233	321785-323233	98.4%	344.27	251.02	321.13	300.10	235.59	204.74	297.64	310.61	220.16	1.10	1.26	0.91	-0.50	-0.23	Matched[2093]
YGL096W	TOS8	"Homeodomain-containing transcription factor; SBF regulated target gene that in turn regulates expression of genes involved in G1/S phase events such as bud site selection, bud emergence and cell cycle progression; similarity to Cup9p"	Verified	chr7:325334-326164	325334-326164	98.8%	91.31	192.36	109.57	96.18	477.25	315.32	141.84	102.88	396.29	0.52	0.42	1.64	1.95	1.65	Frag>80[2096,2097]
YGL095C	VPS45	"Protein of the Sec1p/Munc-18 family, essential for vacuolar protein sorting; required for the function of Pep12p and the early endosome/late Golgi SNARE Tlg2p; essential for fusion of Golgi-derived vesicles with the prevacuolar compartment"	Verified	chr7:328877-330610	328877-330610	99.3%	170.68	170.10	176.48	169.52	183.45	121.91	170.39	173.00	152.68	0.63	0.70	0.63	-0.18	0.12	Frag>80[2099,2100]
YGL094C	PAN2	"Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex, which acts to control poly(A) tail length and regulate the stoichiometry and activity of postreplication repair complexes"	Verified	chr7:331121-334468	331121-334468	99.1%	135.29	116.01	110.28	101.24	114.50	112.39	125.65	105.76	113.45	0.46	0.43	0.47	0.10	0.61	Matched[2101]
YGL093W	SPC105	"Protein required for accurate chromosome segregation, localizes to the nuclear side of the spindle pole body; forms a complex with Ydr532cp"	Verified	chr7:334889-337642	334889-337642	98.5%	83.65	90.29	84.76	76.28	157.36	121.24	86.97	80.52	139.30	0.32	0.33	0.58	0.79	0.94	Matched[2102]
YGL092W	NUP145	"Essential nucleoporin, catalyzes its own cleavage in vivo to generate a C-terminal fragment that assembles into the Nup84p subcomplex of the nuclear pore complex, and an N-terminal fragment of unknown function that is homologous to Nup100p"	Verified	chr7:337909-341862	337909-341862	98.8%	205.22	179.63	169.40	156.60	76.25	92.63	192.43	163.00	84.44	0.71	0.66	0.35	-0.95	-0.34	Frag<80[2103]
YGL091C	NBP35	Essential iron-sulfur cluster binding protein localized in the cytoplasm; forms a complex with Cfd1p that is involved in iron-sulfur protein assembly in the cytosol; similar to P-loop NTPases	Verified	chr7:342059-343045	342059-343045	99.1%	131.88	122.68	118.59	94.05	167.66	104.28	127.28	106.32	135.97	0.47	0.43	0.56	0.35	0.26	Covered[2104]
YGL090W	LIF1	Protein involved in DNA double-strand break repair; physically interacts with DNA ligase 4 (Lig4p); homologous to mammalian XRCC4 protein	Verified	chr7:343322-344587	343322-344587	98.3%	65.07	79.53	57.04	53.02	58.64	44.18	72.30	55.03	51.41	0.27	0.22	0.21	-0.10	0.68	Covered/w/another[2105]
YGL089C	MF(ALPHA)2	"Mating pheromone alpha-factor, made by alpha cells; interacts with mating type a cells to induce cell cycle arrest and other responses leading to mating; also encoded by MF(ALPHA)1, which is more highly expressed than MF(ALPHA)2"	Verified	chr7:344794-345156	344794-345156	98.6%	47.50	103.39	58.68	58.68	64.27	47.50	75.45	58.68	55.89	0.28	0.24	0.23	-0.07	-0.05	Covered/w/another[2105]
YGL088W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps snR10, a snoRNA required for preRNA processing"	Dubious	chr7:345839-346204	345839-346204	99.0%	104.91	74.54	88.35	69.02	66.26	96.63	89.73	78.68	81.44	0.33	0.32	0.34	0.05	-0.03	Frag<80[2106,2107]
YGL087C	MMS2	"Protein involved in error-free postreplication DNA repair; forms a heteromeric complex with Ubc13p that has a ubiquitin-conjugating activity; cooperates with chromatin-associated RING finger proteins, Rad18p and Rad5p"	Verified	chr7:346409-346907	346409-346811,346897-346907	98.9%	342.02	510.59	378.66	354.23	825.73	588.76	426.30	366.45	707.25	1.57	1.49	2.93	0.95	0.84	Matched[2107]
YGL086W	MAD1	Coiled-coil protein involved in the spindle-assembly checkpoint; phosphorylated by Mps1p upon checkpoint activation which leads to inhibition of the activity of the anaphase promoting complex; forms a complex with Mad2p	Verified	chr7:347122-349371	347122-349371	98.7%	208.01	186.40	158.48	157.58	174.24	120.66	197.20	158.03	147.45	0.73	0.64	0.61	-0.10	-0.12	Frag>80[2107,2108,2109]
YGL085W		"Putative protein of unknown function, has homology to Staphylococcus aureus nuclease; green fluorescent protein (GFP)-fusion protein localizes to mitochondria and is induced in response to the DNA-damaging agent MMS"	Uncharacterized	chr7:349619-350443	349619-350443	98.6%	79.92	94.67	81.15	76.23	119.26	73.77	87.30	78.69	96.52	0.32	0.32	0.40	0.29	0.11	Matched[2110]
YGL084C	GUP1	Plasma membrane protein with a possible role in proton symport of glycerol; member of the MBOAT family of putative membrane-bound O-acyltransferases	Verified	chr7:350619-352301	350619-352301	98.9%	287.12	232.46	270.30	272.11	295.53	230.66	259.79	271.21	263.10	0.96	1.10	1.09	-0.04	0.17	Matched[2111]
YGL083W	SCY1	"Putative kinase, suppressor of GTPase mutant, similar to bovine rhodopsin kinase"	Verified	chr7:353061-355475	353061-355475	99.1%	87.34	112.41	94.86	75.64	96.53	63.10	99.87	85.25	79.82	0.37	0.35	0.33	-0.09	-0.04	Matched[2112]
YGL082W		Putative protein of unknown function; predicted prenylation/proteolysis target of Afc1p and Rce1p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YGL082W is not an essential gene	Uncharacterized	chr7:355830-356975	355830-356975	98.6%	310.53	394.57	359.19	368.92	557.36	413.15	352.55	364.05	485.26	1.30	1.48	2.01	0.41	0.70	Matched[2113]
YGL081W		"Putative protein of unknown function; non-essential gene; interacts genetically with CHS5, a gene involved in chitin biosynthesis"	Uncharacterized	chr7:357380-358342	357380-358342	98.3%	22.18	20.06	25.34	30.62	86.59	52.80	21.12	27.98	69.70	0.08	0.11	0.29	1.32	1.60	Matched[2114]
YGL080W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr7:358639-359031	358639-359031	99.1%	346.71	359.55	400.64	369.82	757.62	372.39	353.13	385.23	565.01	1.30	1.56	2.34	0.55	-0.05	Matched[2115]
YGL079W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endosome; identified as a transcriptional activator in a high-throughput yeast one-hybrid assay	Uncharacterized	chr7:359447-360103	359447-360103	98.9%	149.24	127.70	141.55	110.78	146.16	116.93	138.47	126.16	131.55	0.51	0.51	0.55	0.06	-0.25	Matched[2116]
YGL078C	DBP3	Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis	Verified	chr7:360291-361862	360291-361862	99.2%	564.39	311.70	323.24	298.87	31.43	4.49	438.04	311.06	17.96	1.62	1.26	0.07	-4.11	-3.76	Matched[2117]
YGL077C	HNM1	Choline transporter (permease) that also controls the uptake of nitrogen mustard; expression is co-regulated with phospholipid biosynthetic genes and negatively regulated by choline and myo-inositol	Verified	chr7:362228-363919	362228-363919	98.6%	380.50	315.78	335.56	300.80	188.75	119.84	348.14	318.18	154.30	1.29	1.29	0.64	-1.04	-0.73	Frag>80[2118,2119,2120]
YGL076C	RPL7A	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl7Bp and has similarity to E. coli L30 and rat L7 ribosomal proteins; contains a conserved C-terminal Nucleic acid Binding Domain (NDB2)"	Verified	chr7:364338-365999	364338-364967,365436-365529,365989-365999	27.8%	5910.63	4647.21	5288.72	4157.52	1194.86	1287.90	5278.92	4723.12	1241.38	19.49	19.17	5.14	-1.93	-2.87	Frag>80[2120,2121,2122,2123,2124]
YGL075C	MPS2	"Essential membrane protein localized at the nuclear envelope and spindle pole body (SPB), required for insertion of the newly duplicated SPB into the nuclear envelope; potentially phosphorylated by Cdc28p"	Verified	chr7:366928-368091	366928-368091	99.2%	51.98	53.71	34.65	37.25	63.24	48.51	52.84	35.95	55.88	0.20	0.15	0.23	0.64	0.61	Matched[2125]
YGL073W	HSF1	"Trimeric heat shock transcription factor, activates multiple genes in response to stresses that include hyperthermia; recognizes variable heat shock elements (HSEs) consisting of inverted NGAAN repeats; posttranslationally regulated"	Verified	chr7:368756-371257	368756-371257	98.8%	143.65	141.22	125.44	124.63	244.00	239.55	142.44	125.04	241.78	0.53	0.51	1.00	0.95	1.29	Matched[2126]
YGL074C		Dubious open reading frame unlikely to encode a functional protein; overlaps 5' end of essential HSF1 gene encoding heat shock transcription factor	Dubious	chr7:368599-368925	368599-368925	98.5%	55.89	46.58	59.00	46.58	55.89	65.21	51.24	52.79	60.55	0.19	0.21	0.25	0.20	0.86	Covered/w/another[2126]
YGL072C		Dubious open reading frame unlikely to encode a protein; partially overlaps the verified gene HSF1	Dubious	chr7:371006-371365	371006-371365	98.3%	206.31	152.61	163.92	135.66	325.01	214.79	179.46	149.79	269.90	0.66	0.61	1.12	0.85	0.12	Covered/w/another[2126]
YGL071W	AFT1	Transcription factor involved in iron utilization and homeostasis; binds the consensus site PyPuCACCCPu and activates the expression of target genes in response to changes in iron availability	Verified	chr7:372015-374087	372015-374087	98.9%	205.33	125.83	166.80	130.22	151.68	161.43	165.58	148.51	156.56	0.61	0.60	0.65	0.08	0.50	Matched[2127]
YGL070C	RPB9	RNA polymerase II subunit B12.6; contacts DNA; mutations affect transcription start site; involved in telomere maintenance	Verified	chr7:374462-374830	374462-374830	98.9%	293.05	328.65	304.01	334.13	221.84	128.72	310.85	319.07	175.28	1.15	1.30	0.73	-0.86	-1.32	Covered/w/another[2127]
YGL068W	MNP1	Protein associated with the mitochondrial nucleoid; putative mitochondrial ribosomal protein with similarity to E. coli L7/L12 ribosomal protein; required for normal respiratory growth	Verified	chr7:375090-375674	375090-375674	98.4%	897.89	889.21	885.74	880.53	963.89	580.07	893.55	883.13	771.98	3.30	3.58	3.20	-0.19	-0.81	Frag>80[2128,2129]
YGL069C		"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; 92% of ORF overlaps the uncharacterized ORF YGL068W; deletion in cyr1 mutant results in loss of stress resistance"	Dubious	chr7:375053-375517	375053-375517	98.4%	747.34	823.82	799.78	745.15	847.86	550.67	785.58	772.47	699.26	2.90	3.14	2.90	-0.14	0.06	Frag>80[2128,2129]
YGL067W	NPY1	"NADH diphosphatase (pyrophosphatase), hydrolyzes the pyrophosphate linkage in NADH and related nucleotides; localizes to peroxisomes"	Verified	chr7:376104-377258	376104-377258	99.0%	207.23	180.12	207.23	174.00	140.78	92.68	193.68	190.61	116.73	0.71	0.77	0.48	-0.71	-0.52	Matched[2130]
YGL066W	SGF73	73 kDa subunit of SAGA histone acetyltransferase complex; involved in formation of the preinitiation complex assembly at promoters	Verified	chr7:377612-379585	377612-379585	98.2%	138.84	153.29	122.84	115.61	109.42	86.19	146.06	119.23	97.81	0.54	0.48	0.41	-0.29	-0.08	Covered/w/another[2131]
YGL065C	ALG2	Mannosyltransferase that catalyzes two consecutive steps in the N-linked glycosylation pathway; alg2 mutants exhibit temperature-sensitive growth and abnormal accumulation of the lipid-linked oligosaccharide Man2GlcNAc2-PP-Dol	Verified	chr7:379763-381274	379763-381274	99.2%	176.68	180.01	176.68	158.68	123.34	94.01	178.35	167.68	108.68	0.66	0.68	0.45	-0.63	-0.29	Covered/w/another[2131]
YGL064C	MRH4	"Mitochondrial ATP-dependent RNA helicase of the DEAD-box family, plays an essential role in mitochondrial function"	Verified	chr7:381526-383211	381526-383211	98.9%	57.57	62.37	67.76	50.37	35.98	28.78	59.97	59.07	32.38	0.22	0.24	0.13	-0.87	-0.21	Matched[2132]
YGL063W	PUS2	"Mitochondrial tRNA:pseudouridine synthase; acts at positions 27 and 28, but not at position 72; efficiently and rapidly targeted to mitochondria, specifically dedicated to mitochondrial tRNA modification"	Verified	chr7:383657-384769	383657-384769	98.2%	64.93	69.51	58.53	29.27	47.56	19.21	67.22	43.90	33.38	0.25	0.18	0.14	-0.40	-0.19	Matched[2133]
YGL063C-A		"Dubious open reading frame, unlikely to encode a functional protein; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr7:384505-384654	384505-384654	98.4%	67.74	101.61	54.19	40.64	54.19	20.32	84.67	47.42	37.26	0.31	0.19	0.15	-0.35	NaN	Covered/w/another[2133]
YGL062W	PYC1	"Pyruvate carboxylase isoform, cytoplasmic enzyme that converts pyruvate to oxaloacetate; highly similar to isoform Pyc2p but differentially regulated; mutations in the human homolog are associated with lactic acidosis"	Verified	chr7:385199-388735	385199-388735	77.9%	185.82	336.44	247.88	225.02	368.38	315.39	261.13	236.45	341.88	0.96	0.96	1.42	0.53	0.77	Frag>80[2134,2135]
YGL061C	DUO1	"Essential subunit of the Dam1 complex (aka DASH complex), couples kinetochores to the force produced by MT depolymerization thereby aiding in chromosome segregation; is transferred to the kinetochore prior to mitosis"	Verified	chr7:388971-389714	388971-389714	99.3%	155.62	110.96	113.67	101.49	82.54	36.54	133.29	107.58	59.54	0.49	0.44	0.25	-0.85	-0.87	Matched[2136]
YGL060W	YBP2	"Protein with a role in resistance to oxidative stress; has similarity to Ybp1p, which is involved in regulation of the transcription factor Yap1p via oxidation of specific cysteine residues"	Verified	chr7:390070-391995	390070-391995	99.1%	100.64	96.97	90.16	90.16	65.52	41.94	98.81	90.16	53.73	0.36	0.37	0.22	-0.75	-0.14	Matched[2137]
YGL059W		"Protein kinase; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr7:392228-393703	392228-393703	99.1%	49.24	103.96	48.56	55.40	179.19	128.58	76.60	51.98	153.88	0.28	0.21	0.64	1.57	1.22	Frag>80[2138,2139]
YGL058W	RAD6	"Ubiquitin-conjugating enzyme (E2), involved in postreplication repair (with Rad18p), sporulation, telomere silencing, and ubiquitin-mediated N-end rule protein degradation (with Ubr1p)"	Verified	chr7:393992-394510	393992-394510	96.4%	465.53	423.58	357.64	349.65	607.39	497.50	444.56	353.65	552.45	1.64	1.44	2.29	0.64	0.68	Matched[2140]
YGL057C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; null mutant exhibits a growth defect on a non-fermentable (respiratory) carbon source"	Uncharacterized	chr7:394972-395835	394972-395835	99.0%	92.34	92.34	104.03	80.65	90.01	85.33	92.34	92.34	87.67	0.34	0.37	0.36	-0.07	0.27	Covered/w/another[2141]
YGL056C	SDS23	"One of two S. cerevisiae homologs (Sds23p and Sds24p) of the Schizosaccharomyces pombe Sds23 protein, which genetic studies have implicated in APC/cyclosome regulation"	Verified	chr7:396041-397624	396041-397624	98.7%	204.73	220.73	165.07	147.79	85.73	92.13	212.73	156.43	88.93	0.79	0.63	0.37	-0.81	-0.30	Covered/w/another[2141]
YGL055W	OLE1	"Delta(9) fatty acid desaturase, required for monounsaturated fatty acid synthesis and for normal distribution of mitochondria"	Verified	chr7:398631-400163	398631-400163	98.9%	497.14	3544.62	444.40	465.49	160.22	91.65	2020.88	454.95	125.93	7.46	1.85	0.52	-1.85	-1.46	Matched[2142]
YGL054C	ERV14	"Protein localized to COPII-coated vesicles, involved in vesicle formation and incorporation of specific secretory cargo; required for the delivery of bud-site selection protein Axl2p to cell surface; related to Drosophila cornichon"	Verified	chr7:400874-401290	400874-401290	99.1%	1405.79	1444.50	1459.02	1352.56	2376.05	1364.65	1425.14	1405.79	1870.35	5.26	5.71	7.75	0.41	-0.01	Frag>80[2143,2144,2145,2146]
YGL053W	PRM8	"Pheromone-regulated protein with 2 predicted transmembrane segments and an FF sequence, a motif involved in COPII binding; forms a complex with Prp9p in the ER; member of DUP240 gene family"	Verified	chr7:402592-403305	402592-403305	51.6%	127.49	154.61	141.05	151.90	273.96	254.97	141.05	146.47	264.47	0.52	0.59	1.10	0.85	1.20	Frag<80[2146,2147,2148,2149,2150]
YGL052W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF MST27"	Dubious	chr7:403440-403745	403440-403745	61.3%	127.91	79.95	117.26	58.63	58.63	53.30	103.93	87.94	55.96	0.38	0.36	0.23	-0.65	0.42	Matched[2149]
YGL051W	MST27	"Putative integral membrane protein, involved in vesicle formation; forms complex with Mst28p; member of DUP240 gene family; binds COPI and COPII vesicles"	Verified	chr7:403690-404394	403690-404394	11.4%	86.82	99.22	111.63	49.61	62.02	37.21	93.02	80.62	49.61	0.34	0.33	0.21	-0.70	-0.05	Frag<80[2149,2150]
YGL050W	TYW3	"Protein required for the synthesis of wybutosine, a modified guanosine found at the 3'-position adjacent to the anticodon of phenylalanine tRNA which supports reading frame maintenance by stabilizing codon-anticodon interactions"	Verified	chr7:405779-406600	405779-406600	98.4%	158.25	121.16	147.13	102.62	97.67	46.98	139.71	124.87	72.33	0.52	0.51	0.30	-0.79	-0.83	Matched[2151]
YGL049C	TIF4632	"Translation initiation factor eIF4G, subunit of the mRNA cap-binding protein complex (eIF4F) that also contains eIF4E (Cdc33p); associates with the poly(A)-binding protein Pab1p, also interacts with eIF4A (Tif1p); homologous to Tif4631p"	Verified	chr7:406863-409607	406863-409607	99.3%	224.95	261.28	257.61	243.66	189.35	222.38	243.11	250.63	205.87	0.90	1.02	0.85	-0.28	0.18	Matched[2152]
YGL048C	RPT6	One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; bound by ubiquitin-protein ligases Ubr1p and Ufd4p; localized mainly to the nucleus throughout the cell cycle	Verified	chr7:410072-411289	410072-411289	99.2%	644.45	530.28	648.58	578.26	880.22	561.72	587.36	613.42	720.97	2.17	2.49	2.99	0.23	0.35	Frag>80[2153,2154,2155]
YGL047W	ALG13	"Catalytic component of UDP-GlcNAc transferase, required for the second step of dolichyl-linked oligosaccharide synthesis; anchored to the ER membrane via interaction with Alg14p; similar to bacterial and human glycosyltransferases"	Verified	chr7:411555-412163	411555-412163	98.7%	121.45	109.80	169.69	164.70	567.31	324.41	115.62	167.20	445.86	0.43	0.68	1.85	1.42	0.96	Frag>80[2155,2156]
YGL045W	RIM8	"Protein of unknown function, involved in the proteolytic activation of Rim101p in response to alkaline pH; has similarity to A. nidulans PalF"	Verified	chr7:414106-415734	414106-415734	98.6%	49.19	82.81	41.09	45.45	122.04	88.41	66.00	43.27	105.22	0.24	0.18	0.44	1.28	1.31	Frag<80[2157]
YGL044C	RNA15	Cleavage and polyadenylation factor I (CF I) component involved in cleavage and polyadenylation of mRNA 3' ends; interacts with the A-rich polyadenylation signal in complex with Rna14p and Hrp1p	Verified	chr7:416150-417040	416150-417040	99.3%	174.12	162.81	144.72	139.07	143.59	90.45	168.46	141.89	117.02	0.62	0.58	0.48	-0.28	-0.40	Covered[2158]
YGL043W	DST1	"General transcription elongation factor TFIIS, enables RNA polymerase II to read through blocks to elongation by stimulating cleavage of nascent transcripts stalled at transcription arrest sites"	Verified	chr7:417487-418416	417487-418416	98.4%	309.19	257.84	240.36	221.79	202.12	205.40	283.52	231.07	203.76	1.05	0.94	0.84	-0.18	0.28	Matched[2159]
YGL042C		"Dubious open reading frame, not conserved in closely related Saccharomyces species; deletion mutation blocks replication of Brome mosaic virus in S. cerevisiae, but this is likely due to effects on the overlapping gene DST1"	Dubious	chr7:418292-418597	418292-418597	98.4%	345.32	292.20	305.48	295.52	325.40	232.43	318.76	300.50	278.92	1.18	1.22	1.16	-0.11	-0.00	Covered/w/another[2159]
YGL041C-B		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr7:418709-418891	418709-418891	98.9%	99.42	93.90	88.38	104.95	143.61	116.00	96.66	96.66	129.80	0.36	0.39	0.54	0.43	NaN	Matched[2160]
YGL041W-A		Dubious open reading frame unlikely to encode a protein; partially overlaps the dubious ORF YGL041C; identified by expression profiling and mass spectrometry	Dubious	chr7:419047-419295	419047-419295	98.4%	273.42	199.97	277.50	228.53	603.98	363.20	236.69	253.02	483.59	0.87	1.03	2.00	0.93	NaN	Matched[2160]
YGL041C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr7:418917-419231	418917-419231	98.3%	287.33	225.99	258.27	225.99	535.92	322.84	256.66	242.13	429.38	0.95	0.98	1.78	0.83	-0.21	Matched[2160]
YGL040C	HEM2	"Delta-aminolevulinate dehydratase, a homo-octameric enzyme, catalyzes the conversion of delta-aminolevulinic acid to porphobilinogen, the second step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus"	Verified	chr7:419533-420561	419533-420561	98.8%	519.28	524.20	538.95	497.64	460.27	298.98	521.74	518.30	379.63	1.93	2.10	1.57	-0.45	-0.33	Matched[2161]
YGL039W		"Oxidoreductase, catalyzes NADPH-dependent reduction of the bicyclic diketone bicyclo[2.2.2]octane-2,6-dione (BCO2,6D) to the chiral ketoalcohol (1R,4S,6S)-6-hydroxybicyclo[2.2.2]octane-2-one (BCO2one6ol)"	Verified	chr7:423967-425013	423967-425013	98.9%	170.01	373.84	184.50	178.71	170.98	88.87	271.93	181.61	129.93	1.00	0.74	0.54	-0.48	-0.01	Covered[2163]
YGL038C	OCH1	"Mannosyltransferase of the cis-Golgi apparatus, initiates the polymannose outer chain elongation of N-linked oligosaccharides of glycoproteins"	Verified	chr7:425368-426810	425368-426810	99.0%	234.53	294.03	242.23	200.92	160.32	89.61	264.28	221.57	124.96	0.98	0.90	0.52	-0.83	-0.64	Frag<80[2164,2165]
YGL037C	PNC1	"Nicotinamidase that converts nicotinamide to nicotinic acid as part of the NAD(+) salvage pathway, required for life span extension by calorie restriction; PNC1 expression responds to all known stimuli that extend replicative life span"	Verified	chr7:427303-427953	427303-427953	98.9%	1368.63	2425.01	2693.77	3013.79	22148.23	15095.35	1896.82	2853.78	18621.79	7.00	11.58	77.16	2.71	1.95	Frag>80[2165,2166]
YGL036W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YGL036W is not an essential gene	Uncharacterized	chr7:428606-431335	428606-431335	99.1%	130.12	169.30	159.69	162.28	380.37	331.95	149.71	160.98	356.16	0.55	0.65	1.48	1.15	1.07	Matched[2167]
YGL035C	MIG1	Transcription factor involved in glucose repression; sequence specific DNA binding protein containing two Cys2His2 zinc finger motifs; regulated by the SNF1 kinase and the GLC7 phosphatase	Verified	chr7:431553-433067	431553-433067	98.7%	276.86	373.16	349.09	366.47	303.61	218.68	325.01	357.78	261.15	1.20	1.45	1.08	-0.45	-0.00	Frag>80[2168,2169]
YGL034C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr7:433219-433584	433219-433584	98.6%	5.54	8.31	2.77	2.77	11.08	0.00	6.93	2.77	5.54	0.03	0.01	0.02	1.00	-0.30	
YGL033W	HOP2	"Meiosis-specific protein that localizes to chromosomes, preventing synapsis between nonhomologous chromosomes and ensuring synapsis between homologs; complexes with Mnd1p to promote homolog pairing and meiotic double-strand break repair"	Verified	chr7:435630-436356	435630-435684,435755-436356	98.8%	4.62	13.86	4.62	9.24	7.70	6.16	9.24	6.93	6.93	0.03	0.03	0.03	0.00	-0.40	Frag<80[2170,2171]
YGL032C	AGA2	"Adhesion subunit of a-agglutinin of a-cells, C-terminal sequence acts as a ligand for alpha-agglutinin (Sag1p) during agglutination, modified with O-linked oligomannosyl chains, linked to anchorage subunit Aga1p via two disulfide bonds"	Verified	chr7:436575-436838	436575-436838	98.8%	1446.06	2082.79	1929.36	1695.38	410.42	241.65	1764.42	1812.37	326.03	6.51	7.36	1.35	-2.47	-2.71	Matched[2171]
YGL031C	RPL24A	"Ribosomal protein L30 of the large (60S) ribosomal subunit, nearly identical to Rpl24Bp and has similarity to rat L24 ribosomal protein; not essential for translation but may be required for normal translation rate"	Verified	chr7:437472-438403	437472-437946,438402-438403	64.9%	10762.19	8603.29	9052.52	7856.72	2113.65	1470.51	9682.74	8454.62	1792.08	35.74	34.32	7.43	-2.24	-3.59	Matched[2172]
YGL030W	RPL30	"Protein component of the large (60S) ribosomal subunit, has similarity to rat L30 ribosomal protein; involved in pre-rRNA processing in the nucleolus; autoregulates splicing of its transcript"	Verified	chr7:439096-439643	439096-439098,439329-439643	98.9%	13885.03	12165.30	11869.67	10566.36	3121.59	2403.18	13025.17	11218.01	2762.38	48.08	45.54	11.45	-2.02	-2.77	Frag>80[2173,2174,2175]
YGL029W	CGR1	Protein involved in nucleolar integrity and processing of the pre-rRNA for the 60S ribosome subunit; transcript is induced in response to cytotoxic stress but not genotoxic stress	Verified	chr7:440068-440430	440068-440430	97.7%	580.76	391.87	338.31	287.56	53.57	42.29	486.32	312.93	47.93	1.80	1.27	0.20	-2.71	-3.50	Matched[2176]
YGL028C	SCW11	Cell wall protein with similarity to glucanases; may play a role in conjugation during mating based on its regulation by Ste12p	Verified	chr7:441286-442914	441286-442914	95.6%	456.39	478.86	392.84	264.46	184.23	111.69	467.62	328.65	147.96	1.73	1.33	0.61	-1.15	-0.59	Matched[2177]
YGL027C	CWH41	"Processing alpha glucosidase I, ER type II integral membrane N-glycoprotein involved in assembly of cell wall beta 1,6 glucan and asparagine-linked protein glycosylation; also involved in ER protein quality control and sensing of ER stress"	Verified	chr7:443647-446148	443647-446148	99.3%	237.99	250.48	229.14	221.89	107.92	80.94	244.24	225.51	94.43	0.90	0.92	0.39	-1.26	-0.57	Matched[2178]
YGL026C	TRP5	"Tryptophan synthase involved in tryptophan biosynthesis, regulated by the general control system of amino acid biosynthesis"	Verified	chr7:446417-448540	446417-448540	98.8%	650.28	898.49	602.64	675.06	373.02	397.79	774.39	638.85	385.41	2.86	2.59	1.60	-0.73	0.06	Frag>80[2179,2180]
YGL024W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially/completely overlaps the verified ORF PGD1/YGL025C"	Dubious	chr7:449793-450128	449793-450128	98.7%	45.21	57.26	51.24	51.24	45.21	45.21	51.24	51.24	45.21	0.19	0.21	0.19	-0.18	-0.23	Covered/w/another[2181]
YGL025C	PGD1	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for basal and activated transcription; direct target of Cyc8p-Tup1p transcriptional corepressor	Verified	chr7:448769-449962	448769-449962	98.3%	109.89	139.71	123.52	118.41	90.30	69.85	124.80	120.97	80.08	0.46	0.49	0.33	-0.60	-0.23	Matched[2181]
YGL023C	PIB2	"Protein binding phosphatidylinositol 3-phosphate, involved in telomere-proximal repression of gene expression; similar to Fab1 and Vps27"	Verified	chr7:450202-452109	450202-452109	98.9%	128.80	135.16	133.57	103.36	143.64	144.70	131.98	118.46	144.17	0.49	0.48	0.60	0.28	0.70	Matched[2182]
YGL022W	STT3	"Subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes asparagine-linked glycosylation of newly synthesized proteins; forms a subcomplex with Ost3p and Ost4p and is directly involved in catalysis"	Verified	chr7:452409-454565	452409-454565	98.8%	694.60	660.34	752.33	658.00	413.01	486.69	677.47	705.16	449.85	2.50	2.86	1.86	-0.65	0.05	Matched[2183]
YGL021W	ALK1	Protein kinase; accumulation and phosphorylation are periodic during the cell cycle; phosphorylated in response to DNA damage; contains characteristic motifs for degradation via the APC pathway; similar to Alk2p and to mammalian haspins	Verified	chr7:454790-457072	454790-457072	99.0%	170.40	214.67	146.06	123.05	150.93	110.21	192.53	134.55	130.57	0.71	0.55	0.54	-0.04	0.12	Matched[2184]
YGL020C	GET1	Subunit of the GET complex; required for the retrieval of HDEL proteins from the Golgi to the ER in an ERD2 dependent fashion and for normal mitochondrial morphology and inheritance	Verified	chr7:457168-457875	457168-457875	99.1%	521.46	558.50	495.81	473.02	411.75	273.55	539.98	484.42	342.65	1.99	1.97	1.42	-0.50	-0.59	Matched[2185]
YGL019W	CKB1	"Beta regulatory subunit of casein kinase 2, a Ser/Thr protein kinase with roles in cell growth and proliferation; the holoenzyme also contains CKA1, CKA2 and CKB2, the many substrates include transcription factors and all RNA polymerases"	Verified	chr7:458161-458997	458161-458997	98.1%	440.72	371.33	396.90	402.98	484.55	379.85	406.03	399.94	432.20	1.50	1.62	1.79	0.11	0.35	Matched[2186]
YGL018C	JAC1	"Specialized J-protein that functions with Hsp70 in Fe-S cluster biogenesis in mitochondria, involved in iron metabolism; contains a J domain typical to J-type chaperones; localizes to the mitochondrial matrix"	Verified	chr7:459115-459669	459115-459669	99.0%	103.71	120.09	65.50	105.53	172.86	151.02	111.90	85.52	161.94	0.41	0.35	0.67	0.92	0.65	Covered/w/another[2187]
YGL017W	ATE1	"Arginyl-tRNA-protein transferase, catalyzes post-translational conjugation of arginine to the amino termini of acceptor proteins which are then subject to degradation via the N-end rule pathway"	Verified	chr7:459859-461370	459859-461370	98.6%	70.40	87.17	70.40	75.10	98.56	81.13	78.78	72.75	89.85	0.29	0.30	0.37	0.30	0.63	Covered/w/another[2187]
YGL016W	KAP122	"Karyopherin beta, responsible for import of the Toa1p-Toa2p complex into the nucleus; binds to nucleoporins Nup1p and Nup2p; may play a role in regulation of pleiotropic drug resistance"	Verified	chr7:461671-464916	461671-464916	99.1%	115.29	100.06	89.81	60.29	40.09	22.06	107.68	75.05	31.08	0.40	0.30	0.13	-1.27	-0.63	Covered/w/another[2187]
YGL015C		Hypothetical protein	Uncharacterized	chr7:465048-465440	465048-465440	99.0%	18.00	15.43	12.86	5.14	2.57	15.43	16.71	9.00	9.00	0.06	0.04	0.04	0.00	0.37	Overlap[2187]
YGL014W	PUF4	"Member of the PUF protein family, which is defined by the presence of Pumilio homology domains that confer RNA binding activity; preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors"	Verified	chr7:466146-468812	466146-468812	98.2%	282.21	262.35	312.00	289.46	125.26	158.10	272.28	300.73	141.68	1.01	1.22	0.59	-1.09	-0.25	Matched[2188]
YGL014C-A		"Dubious open reading frame, unlikely to encode a functional protein; identified by expression profiling and mass spectrometry"	Dubious	chr7:466242-466403	466242-466403	99.4%	161.49	198.76	217.39	267.08	43.48	124.22	180.12	242.24	83.85	0.66	0.98	0.35	-1.53	NaN	Covered/w/another[2188]
YGL013C	PDR1	Zinc cluster protein that is a master regulator involved in recruiting other zinc cluster proteins to pleiotropic drug response elements (PDREs) to fine tune the regulation of multidrug resistance genes	Verified	chr7:469097-472303	469097-472303	98.7%	90.63	84.63	80.84	65.05	79.26	70.73	87.63	72.94	75.00	0.32	0.30	0.31	0.04	0.62	Matched[2189]
YGL012W	ERG4	"C-24(28) sterol reductase, catalyzes the final step in ergosterol biosynthesis; mutants are viable, but lack ergosterol"	Verified	chr7:472860-474281	472860-474281	98.8%	932.25	1063.90	838.31	845.43	604.89	422.71	998.07	841.87	513.80	3.68	3.42	2.13	-0.71	-0.50	Matched[2190]
YGL011C	SCL1	Alpha subunit of the 20S core complex of the 26S proteasome involved in the degradation of ubiquitinated substrates; essential for growth; detected in the mitochondria	Verified	chr7:474494-475252	474494-475252	99.1%	820.21	650.05	829.51	782.98	1458.29	1055.50	735.13	806.25	1256.90	2.71	3.27	5.21	0.64	0.81	Frag>80[2191,2192]
YGL010W		Putative protein of unknown function; YGL010W is not an essential gene	Uncharacterized	chr7:475550-476074	475550-476074	99.0%	111.58	121.20	157.76	165.45	671.42	357.84	116.39	161.60	514.63	0.43	0.66	2.13	1.67	0.73	Matched[2193]
YGL009C	LEU1	"Isopropylmalate isomerase, catalyzes the second step in the leucine biosynthesis pathway"	Verified	chr7:476318-478657	476318-478657	99.0%	942.72	733.80	703.15	703.58	225.32	184.74	838.26	703.37	205.03	3.09	2.86	0.85	-1.78	-1.23	Matched[2194]
YGL008C	PMA1	"Plasma membrane H+-ATPase, pumps protons out of the cell; major regulator of cytoplasmic pH and plasma membrane potential; part of the P2 subgroup of cation-transporting ATPases"	Verified	chr7:479915-482671	479915-482671	88.7%	6806.67	6934.25	5988.86	5210.30	1749.71	2622.32	6870.46	5599.58	2186.02	25.36	22.73	9.06	-1.36	-1.77	Frag>80[2195,2196,2197]
YGL007C-A		"Putative protein of unknown function, identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching; haploid deletion strain exhibits a slow-growth phenotype"	Uncharacterized	chr7:482946-483032	482946-483032	99.0%	11.61	11.61	34.82	11.61	23.21	69.63	11.61	23.21	46.42	0.04	0.09	0.19	1.00	NaN	Covered/w/another[2198]
YGL007W	BRP1	"Dubious ORF located in the upstream region of PMA1, deletion leads to polyamine resistance due to downregulation of PMA1"	Dubious	chr7:483265-483642	483265-483642	98.5%	8.06	18.80	13.43	13.43	16.12	13.43	13.43	13.43	14.78	0.05	0.05	0.06	0.14	0.44	Covered/w/another[2198]
YGL006W-A		Putative protein of unknown function; identified by SAGE	Uncharacterized	chr7:485428-485538	485428-485538	99.3%	9.07	54.44	36.29	27.22	36.29	9.07	31.76	31.76	22.68	0.12	0.13	0.09	-0.49	NaN	Covered/w/another[2199]
YGL006W	PMC1	Vacuolar Ca2+ ATPase involved in depleting cytosol of Ca2+ ions; prevents growth inhibition by activation of calcineurin in the presence of elevated concentrations of calcium; similar to mammalian PMCA1a	Verified	chr7:485925-489446	485925-489446	98.8%	180.97	230.09	240.43	233.25	246.75	313.39	205.53	236.84	280.07	0.76	0.96	1.16	0.24	0.80	Covered/w/another[2199]
YGL005C	COG7	"Component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering complex that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments"	Verified	chr7:489712-490551	489712-490551	99.5%	183.09	196.25	161.55	167.53	235.74	160.35	189.67	164.54	198.05	0.70	0.67	0.82	0.27	0.13	Covered/w/another[2199]
YGL004C	RPN14	Putative non-ATPase subunit of the 19S regulatory particle of the 26S proteasome; localized to the cytoplasm	Uncharacterized	chr7:490707-491960	490707-491960	99.3%	107.64	113.27	115.68	98.81	244.21	174.32	110.46	107.24	209.26	0.41	0.44	0.87	0.96	1.19	Covered/w/another[2199]
YGL003C	CDH1	"Cell-cycle regulated activator of the anaphase-promoting complex/cyclosome (APC/C), which directs ubiquitination of cyclins resulting in mitotic exit; targets the APC/C to specific substrates including CDC20, ASE1, CIN8 and FIN1"	Verified	chr7:492478-494178	492478-494178	99.0%	90.86	102.73	84.33	70.67	100.95	66.51	96.80	77.50	83.73	0.36	0.31	0.35	0.11	0.28	Matched[2200]
YGL002W	ERP6	"Protein with similarity to Emp24p and Erv25p, member of the p24 family involved in ER to Golgi transport; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr7:494521-495171	494521-495171	98.7%	270.92	255.35	277.15	266.25	342.55	258.47	263.14	271.70	300.51	0.97	1.10	1.25	0.15	0.14	Frag>80[2201,2202]
YGL001C	ERG26	"C-3 sterol dehydrogenase, catalyzes the second of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis"	Verified	chr7:495457-496506	495457-496506	99.2%	487.93	558.05	440.87	411.09	389.96	326.57	522.99	425.98	358.27	1.93	1.73	1.48	-0.25	-0.14	Matched[2203]
YGR001C		Putative protein of unknown function with similarity to methyltransferase family members; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; required for replication of Brome mosaic virus in S. cerevisiae	Uncharacterized	chr7:497137-498038	497137-497369,497463-497941,498004-498038	99.2%	351.04	303.78	299.73	264.63	306.48	163.37	327.41	282.18	234.92	1.21	1.15	0.97	-0.26	-0.33	Matched[2205]
YGR002C	SWC4	Component of the Swr1p complex that incorporates Htz1p into chromatin; component of the NuA4 histone acetyltransferase complex	Verified	chr7:498480-499910	498480-499910	99.0%	129.17	141.16	110.11	119.99	151.05	126.34	135.16	115.05	138.69	0.50	0.47	0.57	0.27	0.83	Matched[2206]
YGR003W	CUL3	"Ubiquitin-protein ligase, member of the cullin family with similarity to Cdc53p and human CUL3; required for ubiquitin-dependent degredation of the RNA Polymerase II subunit RPO21"	Verified	chr7:500136-502370	500136-502370	98.8%	47.53	38.48	32.14	28.97	25.80	21.28	43.01	30.56	23.54	0.16	0.12	0.10	-0.38	-0.14	Matched[2207]
YGR004W	PEX31	"Peroxisomal integral membrane protein, involved in negative regulation of peroxisome size; partially functionally redundant with Pex30p and Pex32p; probably acts at a step downstream of steps mediated by Pex28p and Pex29p"	Verified	chr7:502942-504330	502942-504330	98.8%	75.75	75.02	69.92	64.09	42.97	41.51	75.38	67.01	42.24	0.28	0.27	0.18	-0.67	-0.06	Matched[2208]
YGR005C	TFG2	TFIIF (Transcription Factor II) middle subunit; involved in both transcription initiation and elongation of RNA polymerase II; homologous to human RAP30	Verified	chr7:504661-505863	504661-505863	99.5%	277.45	296.67	277.45	289.15	242.35	213.10	287.06	283.30	227.72	1.06	1.15	0.94	-0.32	-0.12	Matched[2209]
YGR006W	PRP18	"Splicing factor involved in the positioning of the 3' splice site during the second catalytic step of splicing, part of snRNP U5, interacts with Slu7p"	Verified	chr7:506074-506829	506074-506829	98.8%	52.22	60.25	38.83	29.46	38.83	42.85	56.23	34.14	40.84	0.21	0.14	0.17	0.26	0.81	Matched[2210]
YGR007W	MUQ1	"Choline phosphate cytidylyltransferase, catalyzes the second step of phosphatidylethanolamine biosynthesis; involved in the maintenance of plasma membrane; similar to mammalian CTP: phosphocholine cytidylyl-transferases"	Verified	chr7:506973-507944	506973-507944	98.6%	332.81	393.32	296.30	268.13	245.17	126.24	363.07	282.21	185.71	1.34	1.15	0.77	-0.60	-0.35	Matched[2211]
YGR008C	STF2	Protein involved in regulation of the mitochondrial F1F0-ATP synthase; Stf1p and Stf2p act as stabilizing factors that enhance inhibitory action of the Inh1p protein	Verified	chr7:508114-508368	508114-508368	99.3%	1035.06	2876.05	2046.42	1927.90	20195.55	9761.98	1955.56	1987.16	14978.77	7.22	8.07	62.06	2.91	1.27	Matched[2212]
YGR009C	SEC9	t-SNARE protein important for fusion of secretory vesicles with the plasma membrane; similar to but not functionally redundant with Spo20p; SNAP-25 homolog	Verified	chr7:509051-511006	509051-511006	99.3%	210.00	200.22	226.47	224.92	265.07	191.47	205.11	225.70	228.27	0.76	0.92	0.95	0.02	0.31	Matched[2214]
YGR010W	NMA2	"Nicotinic acid mononucleotide adenylyltransferase, involved in NAD(+) salvage pathway"	Verified	chr7:511549-512736	511549-512736	98.8%	119.29	113.32	109.92	115.03	173.82	128.66	116.31	112.47	151.24	0.43	0.46	0.63	0.43	0.57	Matched[2215]
YGR011W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr7:512501-512827	512501-512827	98.9%	151.55	188.66	185.57	188.66	262.89	170.10	170.10	187.11	216.49	0.63	0.76	0.90	0.21	0.53	Frag<80[2216]
YGR012W		"Putative cysteine synthase, localized to the mitochondrial outer membrane"	Verified	chr7:513163-514344	513163-514344	98.5%	117.67	146.02	143.44	96.20	125.40	116.81	131.84	119.82	121.11	0.49	0.49	0.50	0.02	0.54	Covered/w/another[2217]
YGR013W	SNU71	"Component of U1 snRNP required for mRNA splicing via spliceosome; yeast specific, no metazoan counterpart"	Verified	chr7:514558-516420	514558-516420	98.3%	120.08	108.08	106.98	86.24	121.18	94.98	114.08	96.61	108.08	0.42	0.39	0.45	0.16	0.52	Covered/w/another[2217]
YGR014W	MSB2	Mucin family member involved in the Cdc42p- and MAP kinase-dependent filamentous growth signaling pathway; also functions as an osmosensor in parallel to the Sho1p-mediated pathway; potential Cdc28p substrate	Verified	chr7:516947-520867	516947-520867	93.4%	322.35	311.43	321.26	244.22	79.50	90.70	316.89	282.74	85.10	1.17	1.15	0.35	-1.73	-1.00	Frag<80[2218]
YGR015C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the mitochondrion	Uncharacterized	chr7:521094-522080	521094-522080	99.0%	92.08	103.34	66.50	46.04	76.74	51.16	97.71	56.27	63.95	0.36	0.23	0.26	0.18	-0.20	Matched[2219]
YGR016W		Putative protein of unknown function	Uncharacterized	chr7:522265-522837	522265-522837	99.1%	52.84	51.08	31.70	26.42	79.26	26.42	51.96	29.06	52.84	0.19	0.12	0.22	0.86	0.08	Matched[2220]
YGR017W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the nucleus and the cytoplasm	Uncharacterized	chr7:523791-524684	523791-524684	98.6%	474.44	442.66	464.22	450.60	464.22	254.24	458.55	457.41	359.23	1.69	1.86	1.49	-0.35	-0.51	Matched[2221]
YGR018C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YGR017W"	Dubious	chr7:524369-524698	524369-524698	98.3%	511.88	499.55	518.05	474.88	542.72	268.28	505.72	496.47	405.50	1.87	2.02	1.68	-0.29	-0.29	Matched[2221]
YGR019W	UGA1	Gamma-aminobutyrate (GABA) transaminase (4-aminobutyrate aminotransferase) involved in the 4-aminobutyrate and glutamate degradation pathways; required for normal oxidative stress tolerance and nitrogen utilization	Verified	chr7:525233-526648	525233-526648	98.8%	180.89	279.56	209.49	190.90	464.74	282.42	230.23	200.20	373.58	0.85	0.81	1.55	0.90	0.87	Covered/w/another[2222]
YGR020C	VMA7	"Subunit F of the eight-subunit V1 peripheral membrane domain of vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; required for the V1 domain to assemble onto the vacuolar membrane"	Verified	chr7:526977-527333	526977-527333	98.9%	2211.68	2492.04	2189.03	2138.05	1750.09	1444.25	2351.86	2163.54	1597.17	8.68	8.78	6.62	-0.44	-0.58	Covered/w/another[2222]
YGR021W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr7:527636-528508	527636-528508	98.2%	173.81	146.98	166.81	127.15	234.47	165.65	160.40	146.98	200.06	0.59	0.60	0.83	0.44	0.60	Matched[2223]
YGR023W	MTL1	"Protein with both structural and functional similarity to Mid2p, which is a plasma membrane sensor required for cell integrity signaling during pheromone-induced morphogenesis; suppresses rgd1 null mutations"	Verified	chr7:529268-530923	529268-530923	97.7%	59.32	66.12	62.41	57.47	314.53	272.51	62.72	59.94	293.52	0.23	0.24	1.22	2.29	1.88	Matched[2224]
YGR022C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps almost completely with the verified ORF MTL1/YGR023W"	Dubious	chr7:529261-529590	529261-529590	99.1%	58.08	64.20	73.37	76.42	195.64	235.38	61.14	74.89	215.51	0.23	0.30	0.89	1.52	0.34	Covered/w/another[2224]
YGR024C	THG1	"tRNAHis guanylyltransferase, adds a guanosine residue to the 5' end of tRNAHis after transcription and RNase P cleavage; couples nuclear division and migration to cell budding and cytokinesis; essential enzyme conserved among eukaryotes"	Verified	chr7:531887-532600	531887-532600	99.2%	352.80	419.12	389.49	365.50	296.35	248.37	385.96	377.49	272.36	1.42	1.53	1.13	-0.47	-0.67	Matched[2225]
YGR025W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr7:532643-532945	532643-532945	99.1%	219.91	276.55	216.58	226.57	163.27	179.93	248.23	221.57	171.60	0.92	0.90	0.71	-0.37	-0.28	Overlap[2226]
YGR026W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery	Uncharacterized	chr7:532989-533825	532989-533825	99.0%	940.30	1199.82	955.99	1003.07	1179.30	937.89	1070.06	979.53	1058.59	3.95	3.98	4.39	0.11	0.31	Matched[2226]
YGR027C	RPS25A	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps25Bp and has similarity to rat S25 ribosomal protein	Verified	chr7:534136-534790	534136-534477,534789-534790	76.9%	14492.99	12119.07	12954.48	11363.05	5314.85	5587.02	13306.03	12158.76	5450.94	49.12	49.35	22.59	-1.16	-1.89	Matched[2227]
YGR028W	MSP1	Mitochondrial protein involved in sorting of proteins in the mitochondria; putative membrane-spanning ATPase	Verified	chr7:542207-543295	542207-543295	98.7%	190.71	200.01	200.01	209.31	461.41	270.71	195.36	204.66	366.06	0.72	0.83	1.52	0.84	0.29	Matched[2230]
YGR029W	ERV1	"Flavin-linked sulfhydryl oxidase of the mitochondrial intermembrane space (IMS), oxidizes Mia40p as part of a disulfide relay system that promotes IMS retention of imported proteins; ortholog of human hepatopoietin (ALR)"	Verified	chr7:543557-544209	543557-543642,543726-544209	98.3%	274.88	314.15	289.16	298.08	324.85	194.56	294.51	293.62	259.71	1.09	1.19	1.08	-0.18	-0.56	Matched[2231]
YGR030C	POP6	"Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends"	Verified	chr7:545685-546161	545685-546161	99.4%	134.91	153.89	118.05	82.21	37.94	25.30	144.40	100.13	31.62	0.53	0.41	0.13	-1.66	1.55	Matched[2232]
YGR031W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr7:546445-547473	546445-547473	98.3%	120.64	137.45	143.39	156.24	138.44	96.91	129.05	149.81	117.68	0.48	0.61	0.49	-0.35	-0.05	Matched[2233]
YGR031C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the uncharacterized ORF YGR031W"	Dubious	chr7:546813-547304	546813-547304	98.4%	140.40	146.59	156.92	167.24	150.72	101.17	143.50	162.08	125.95	0.53	0.66	0.52	-0.36	NaN	Matched[2233]
YGR032W	GSC2	"Catalytic subunit of 1,3-beta-glucan synthase, involved in formation of the inner layer of the spore wall; activity positively regulated by Rho1p and negatively by Smk1p; has similarity to an alternate catalytic subunit, Fks1p (Gsc1p)"	Verified	chr7:548268-553955	548268-553955	96.9%	67.86	111.95	62.59	72.39	37.56	33.20	89.90	67.49	35.38	0.33	0.27	0.15	-0.93	-0.41	Frag>80[2234,2235]
YGR033C	TIM21	Constituent of the mitochondrial inner membrane presequence translocase (TIM23 complex); may regulate protein import by binding to both the translocase of the outer membrane (TOM) and presequence-associated motor (PAM) complexes	Verified	chr7:554252-554971	554252-554971	99.0%	304.49	312.91	318.52	280.64	328.34	182.41	308.70	299.58	255.38	1.14	1.22	1.06	-0.23	-0.51	Matched[2236]
YGR034W	RPL26B	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl26Ap and has similarity to E. coli L24 and rat L26 ribosomal proteins; binds to 5.8S rRNA"	Verified	chr7:555816-556676	555816-555834,556312-556676	71.5%	10478.62	8276.62	9794.36	8327.57	1495.91	1241.13	9377.62	9060.96	1368.52	34.62	36.78	5.67	-2.73	-4.03	Matched[2237]
YGR035C		"Putative protein of unknown function, potential Cdc28p substrate; transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in multidrug resistance"	Uncharacterized	chr7:557076-557426	557076-557426	98.9%	244.78	198.70	287.98	213.10	51.84	40.32	221.74	250.54	46.08	0.82	1.02	0.19	-2.44	-1.68	Covered/w/another[2238]
YGR035W-A		Putative protein of unknown function	Uncharacterized	chr7:557569-557790	557569-557790	99.0%	163.79	200.19	122.84	68.25	113.74	95.55	181.99	95.55	104.64	0.67	0.39	0.43	0.13	NaN	Covered/w/another[2238]
YGR036C	CAX4	"Dolichyl pyrophosphate (Dol-P-P) phosphatase with a luminally oriented active site in the ER, cleaves the anhydride linkage in Dol-P-P, required for Dol-P-P-linked oligosaccharide intermediate synthesis and protein N-glycosylation"	Verified	chr7:558153-558872	558153-558872	98.8%	109.65	129.33	95.59	78.72	113.86	81.53	119.49	87.16	97.70	0.44	0.35	0.40	0.16	0.56	Covered/w/another[2238]
YGR037C	ACB1	"Acyl-CoA-binding protein, transports newly synthesized acyl-CoA esters from fatty acid synthetase (Fas1p-Fas2p) to acyl-CoA-consuming processes"	Verified	chr7:559735-559998	559735-559998	99.2%	2474.86	3253.98	2211.33	2196.05	1913.43	1099.94	2864.42	2203.69	1506.68	10.57	8.95	6.24	-0.55	-1.02	Matched[2240]
YGR038W	ORM1	"Evolutionarily conserved protein with similarity to Orm2p, required for resistance to agents that induce the unfolded protein response; human ortholog is located in the endoplasmic reticulum"	Verified	chr7:560686-561354	560686-561354	99.0%	310.94	295.85	282.26	253.58	264.15	163.02	303.40	267.92	213.58	1.12	1.09	0.88	-0.33	-0.19	Matched[2241]
YGR039W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the Autonomously Replicating Sequence ARS722"	Dubious	chr7:574892-575203	574892-575203	99.2%	29.08	32.31	25.85	12.92	48.47	22.62	30.69	19.39	35.54	0.11	0.08	0.15	0.87	0.68	Covered/w/another[2242]
YGR040W	KSS1	Mitogen-activated protein kinase (MAPK) involved in signal transduction pathways that control filamentous growth and pheromone response; the KSS1 gene is nonfunctional in S288C strains and functional in W303 strains	Verified	chr7:575402-576508	575402-576508	98.8%	150.00	154.57	138.11	109.76	70.43	52.13	152.29	123.93	61.28	0.56	0.50	0.25	-1.02	-0.80	Covered/w/another[2242]
YGR041W	BUD9	"Protein involved in bud-site selection; diploid mutants display a unipolar budding pattern instead of the wild-type bipolar pattern, and bud at the distal pole"	Verified	chr7:577491-579134	577491-579134	98.7%	179.99	162.73	134.37	87.53	92.46	60.41	171.36	110.95	76.43	0.63	0.45	0.32	-0.54	-0.88	Covered/w/another[2242]
YGR042W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus	Uncharacterized	chr7:579480-580295	579480-580295	98.6%	156.58	185.16	151.61	155.34	170.25	98.17	170.87	153.47	134.21	0.63	0.62	0.56	-0.19	0.46	Covered/w/another[2242]
YGR043C		Protein of unknown function; transcription is repressed by Mot1p and induced by alpha-factor and during diauxic shift; null mutant non-quiescent cells exhibit reduced reproductive capacity	Uncharacterized	chr7:580439-581440	580439-581440	99.2%	17.11	40.26	23.15	8.05	1325.45	1019.50	28.68	15.60	1172.47	0.11	0.06	4.86	6.23	3.68	Frag>80[2243,2244]
YGR044C	RME1	Zinc finger protein involved in control of meiosis; prevents meiosis by repressing IME1 expression and promotes mitosis by activating CLN2 expression; directly repressed by a1-a2 regulator; mediates cell type control of sporulation	Verified	chr7:582994-583896	582994-583896	98.9%	278.95	434.67	303.60	293.52	729.31	533.26	356.81	298.56	631.28	1.32	1.21	2.62	1.08	1.21	Matched[2246]
YGR045C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr7:583938-584300	583938-584300	98.9%	55.72	47.36	52.94	13.93	66.87	75.23	51.54	33.43	71.05	0.19	0.14	0.29	1.09	-0.85	Covered/w/another[2246]
YGR046W	TAM41	Mitochondrial protein involved in protein import into the mitochondrial matrix; maintains the functional integrity of the TIM23 protein translocator complex; viability of null mutant is strain-dependent; mRNA is targeted to the bud	Verified	chr7:584899-586056	584899-586056	98.8%	133.73	131.10	129.36	144.22	162.57	143.34	132.42	136.79	152.96	0.49	0.56	0.63	0.16	0.32	Matched[2247]
YGR047C	TFC4	One of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauA domain of TFIIIC that binds BoxA DNA promoter sites of tRNA and similar genes; has TPR motifs; human homolog is TFIIIC-102	Verified	chr7:586396-589473	586396-589473	99.3%	94.92	79.53	61.86	62.84	53.68	46.15	87.23	62.35	49.91	0.32	0.25	0.21	-0.32	-0.08	Matched[2248]
YGR048W	UFD1	"Protein that interacts with Cdc48p and Npl4p, involved in recognition of polyubiquitinated proteins and their presentation to the 26S proteasome for degradation; involved in transporting proteins from the ER to the cytosol"	Verified	chr7:589830-590915	589830-590915	98.5%	172.88	156.06	197.18	141.11	306.52	235.50	164.47	169.15	271.01	0.61	0.69	1.12	0.68	0.81	Covered/w/another[2249]
YGR049W	SCM4	"Potential regulatory effector of CDC4 function, suppresses a temperature-sensitive allele of CDC4, tripartite protein structure in which a charged region separates two uncharged domains, not essential for mitosis or meiosis"	Verified	chr7:591318-591881	591318-591881	98.8%	218.83	636.77	193.72	222.42	159.64	121.97	427.80	208.07	140.81	1.58	0.84	0.58	-0.56	-0.14	Covered/w/another[2249]
YGR050C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr7:592090-592446	592090-592446	98.8%	36.87	51.05	82.24	82.24	201.35	90.75	43.96	82.24	146.05	0.16	0.33	0.61	0.83	0.31	Covered/w/another[2249]
YGR051C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; YGR051C is not an essential gene"	Dubious	chr7:592910-593233	592910-593233	98.3%	43.98	59.69	53.40	40.84	47.12	15.71	51.83	47.12	31.41	0.19	0.19	0.13	-0.58	1.29	Covered/w/another[2249]
YGR052W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr7:593600-594709	593600-594709	98.9%	10.02	16.40	19.13	28.24	451.82	314.27	13.21	23.68	383.04	0.05	0.10	1.59	4.02	3.68	Matched[2250]
YGR053C		Putative protein of unknown function	Uncharacterized	chr7:594990-595841	594990-595841	99.4%	42.51	59.04	49.59	38.96	121.62	56.68	50.77	44.28	89.15	0.19	0.18	0.37	1.01	0.50	Matched[2251]
YGR054W		"Eukaryotic initiation factor (eIF) 2A; associates specifically with both 40S subunits and 80 S ribosomes, and interacts genetically with both eIF5b and eIF4E; homologous to mammalian eIF2A"	Verified	chr7:596697-598625	596697-598625	98.8%	368.74	303.70	325.20	303.70	163.13	178.34	336.22	314.45	170.73	1.24	1.28	0.71	-0.88	-0.19	Matched[2252]
YGR055W	MUP1	"High affinity methionine permease, integral membrane protein with 13 putative membrane-spanning regions; also involved in cysteine uptake"	Verified	chr7:599421-601145	599421-601145	98.9%	240.98	413.94	303.72	221.04	172.38	138.96	327.46	262.38	155.67	1.21	1.07	0.64	-0.75	-0.07	Matched[2253]
YGR056W	RSC1	"Component of the RSC chromatin remodeling complex; required for expression of mid-late sporulation-specific genes; contains two essential bromodomains, a bromo-adjacent homology (BAH) domain, and an AT hook"	Verified	chr7:601665-604451	601665-604451	98.9%	103.75	106.29	103.03	83.80	74.01	66.39	105.02	93.42	70.20	0.39	0.38	0.29	-0.41	0.06	Covered/w/another[2254]
YGR057C	LST7	Protein possibly involved in a post-Golgi secretory pathway; required for the transport of nitrogen-regulated amino acid permease Gap1p from the Golgi to the cell surface	Verified	chr7:604777-605505	604777-605505	99.3%	82.90	110.53	73.23	66.32	66.32	59.41	96.71	69.77	62.86	0.36	0.28	0.26	-0.15	-0.04	Covered/w/another[2254]
YGR058W	PEF1	"Penta-EF-hand protein required for polar bud growth and cell wall abscission; binds calcium and zinc with different affinity; localizes to bud site in G1, bud neck in G2"	Verified	chr7:606140-607147	606140-607147	98.8%	75.29	57.22	71.28	41.16	47.18	42.16	66.26	56.22	44.67	0.24	0.23	0.19	-0.33	0.25	Matched[2255]
YGR059W	SPR3	Sporulation-specific homolog of the yeast CDC3/10/11/12 family of bud neck microfilament genes; septin protein involved in sporulation; regulated by ABFI	Verified	chr7:607567-609105	607567-609105	98.7%	6.59	4.61	5.27	5.27	7.90	21.08	5.60	5.27	14.49	0.02	0.02	0.06	1.46	0.54	Frag<80[2256,2257]
YGR060W	ERG25	"C-4 methyl sterol oxidase, catalyzes the first of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis; mutants accumulate the sterol intermediate 4,4-dimethylzymosterol"	Verified	chr7:610568-611497	610568-611497	99.1%	1307.06	2482.87	1195.34	1083.61	509.81	402.42	1894.97	1139.47	456.11	7.00	4.63	1.89	-1.32	-0.77	Matched[2259]
YGR061C	ADE6	"Formylglycinamidine-ribonucleotide (FGAM)-synthetase, catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway"	Verified	chr7:611893-615969	611893-615969	99.0%	871.45	551.65	749.08	628.44	114.19	93.39	711.55	688.76	103.79	2.63	2.80	0.43	-2.73	-1.93	Frag<80[2260]
YGR062C	COX18	"Mitochondrial inner membrane protein, required for export of the Cox2p C terminus from the mitochondrial matrix to the intermembrane space during its assembly into cytochrome c oxidase; similar to Oxa2p of N. crassa"	Verified	chr7:616332-617282	616332-617282	98.7%	134.22	177.89	155.52	106.52	127.82	83.09	156.05	131.02	105.45	0.58	0.53	0.44	-0.31	-0.17	Covered/w/another[2261]
YGR064W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF SPT4/YGR063C"	Dubious	chr7:617625-617993	617625-617993	99.2%	319.71	275.99	273.26	221.34	314.24	122.96	297.85	247.30	218.60	1.10	1.00	0.91	-0.18	-1.00	Covered/w/another[2261]
YGR063C	SPT4	"Protein that forms a complex with Spt5p and mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing; in addition, Spt4p is involved in kinetochore function and gene silencing"	Verified	chr7:617520-617828	617520-617828	99.2%	427.41	384.99	424.14	290.38	430.67	189.23	406.20	357.26	309.95	1.50	1.45	1.28	-0.20	-0.75	Covered/w/another[2261]
YGR065C	VHT1	High-affinity plasma membrane H+-biotin (vitamin H) symporter; mutation results in fatty acid auxotrophy; 12 transmembrane domain containing major facilitator subfamily member; mRNA levels negatively regulated by iron deprivation and biotin	Verified	chr7:618081-619862	618081-619862	98.9%	81.10	83.37	72.60	58.42	33.46	27.79	82.24	65.51	30.63	0.30	0.27	0.13	-1.10	-0.58	Covered/w/another[2261]
YGR066C		Putative protein of unknown function	Uncharacterized	chr7:620925-621803	620925-621803	99.0%	18.38	40.20	14.93	16.08	198.71	119.45	29.29	15.51	159.08	0.11	0.06	0.66	3.36	3.93	Matched[2262]
YGR067C		Putative protein of unknown function; contains a zinc finger motif similar to that of Adr1p	Uncharacterized	chr7:622406-624790	622406-624790	98.9%	9.33	7.63	6.79	6.79	22.90	15.27	8.48	6.79	19.08	0.03	0.03	0.08	1.49	1.62	Frag<80[2263,2264]
YGR068W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps with the uncharacterized ORF YGR068C"	Dubious	chr7:626298-626393	626298-626393	99.0%	147.30	115.74	52.61	73.65	73.65	84.17	131.52	63.13	78.91	0.49	0.26	0.33	0.32	NaN	Covered/w/another[2265]
YGR069W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr7:627087-627422	627087-627422	94.3%	28.41	59.97	37.87	18.94	69.44	18.94	44.19	28.41	44.19	0.16	0.12	0.18	0.64	0.35	Covered/w/another[2265]
YGR068C		Putative protein of unknown function; YGR068C is not an essential gene.	Uncharacterized	chr7:625328-627088	625328-627088	98.9%	90.75	98.79	87.30	66.62	94.19	94.77	94.77	76.96	94.48	0.35	0.31	0.39	0.30	1.17	Matched[2265]
YGR070W	ROM1	"GDP/GTP exchange protein (GEP) for Rho1p; mutations are synthetically lethal with mutations in rom2, which also encodes a GEP"	Verified	chr7:627810-631277	627810-631277	99.0%	52.72	74.86	67.87	78.93	266.81	289.82	63.79	73.40	278.31	0.24	0.30	1.15	1.92	1.66	Matched[2266]
YGR071C		Putative protein of unknown function; deletion mutant has increased glycogen accumulation; green fluorescent protein (GFP)-fusion protein localizes to the nucleus	Uncharacterized	chr7:631485-634067	631485-634067	99.1%	73.06	76.97	61.34	58.60	63.29	48.06	75.01	59.97	55.67	0.28	0.24	0.23	-0.11	-0.70	Matched[2267]
YGR072W	UPF3	"Component of the nonsense-mediated mRNA decay (NMD) pathway, along with Nam7p and Nmd2p; involved in decay of mRNA containing nonsense codons; involved in telomere maintenance"	Verified	chr7:634308-635471	634308-635471	98.4%	180.68	153.62	136.17	122.20	103.00	91.65	167.15	129.18	97.32	0.62	0.52	0.40	-0.41	-0.24	Covered/w/another[2268]
YGR074W	SMD1	"Core Sm protein Sm D1; part of heteroheptameric complex (with Smb1p, Smd2p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm D1"	Verified	chr7:635716-636156	635716-636156	98.8%	339.81	305.37	351.29	245.67	257.15	123.98	322.59	298.48	190.57	1.19	1.21	0.79	-0.65	-1.11	Covered/w/another[2268]
YGR073C		"Dubious open reading frame unlikely to encode a functional protein, extensively overlaps essential SMD1 gene encoding a U6 snRNP protein"	Dubious	chr7:635619-635990	635619-635990	98.9%	250.11	220.21	263.71	171.27	187.58	106.03	235.16	217.49	146.81	0.87	0.88	0.61	-0.57	0.06	Covered/w/another[2268]
YGR075C	PRP38	"Unique component of the U4/U6.U5 tri-snRNP particle, dispensable for spliceosome assembly, but required for conformational changes which lead to catalytic activation of the spliceosome"	Verified	chr7:636151-636879	636151-636879	99.4%	160.06	171.09	135.22	125.56	118.66	81.41	165.57	130.39	100.03	0.61	0.53	0.41	-0.38	0.11	Frag<80[2269]
YGR076C	MRPL25	Mitochondrial ribosomal protein of the large subunit	Verified	chr7:637108-637581	637108-637581	99.0%	281.23	236.48	276.96	240.75	423.97	317.44	258.85	258.85	370.71	0.96	1.05	1.54	0.52	0.24	Covered/w/another[2270]
YGR077C	PEX8	"Intraperoxisomal organizer of the peroxisomal import machinery, tightly associated with the lumenal face of the peroxisomal membrane, essential for peroxisome biogenesis, binds PTS1-signal receptor Pex5p"	Verified	chr7:637748-639517	637748-639517	98.9%	140.58	148.58	129.15	101.15	160.58	136.58	144.58	115.15	148.58	0.53	0.47	0.62	0.37	0.88	Covered/w/another[2270]
YGR078C	PAC10	"Part of the heteromeric co-chaperone GimC/prefoldin complex, which promotes efficient protein folding"	Verified	chr7:639776-640375	639776-640375	99.1%	274.06	242.12	237.07	230.35	124.42	102.56	258.09	233.71	113.49	0.95	0.95	0.47	-1.04	-0.74	Covered/w/another[2270]
YGR079W		Putative protein of unknown function; YGR079W is not an essential gene	Uncharacterized	chr7:640724-641836	640724-641836	98.6%	116.65	131.23	54.68	37.36	7.29	6.38	123.94	46.02	6.84	0.46	0.19	0.03	-2.75	-2.77	Matched[2271]
YGR080W	TWF1	"Twinfilin, highly conserved actin monomer-sequestering protein involved in regulation of the cortical actin cytoskeleton, composed of two cofilin-like regions, localizes actin monomers to sites of rapid filament assembly"	Verified	chr7:642014-643012	642014-643012	98.7%	213.99	247.45	222.10	245.43	328.59	297.15	230.72	233.76	312.87	0.85	0.95	1.30	0.42	0.72	Matched[2272]
YGR081C	SLX9	Protein required for pre-rRNA processing; associated with the 90S pre-ribosome and 43S small ribosomal subunit precursor; interacts with U3 snoRNA; deletion mutant has synthetic fitness defect with an sgs1 deletion mutant	Verified	chr7:643152-643784	643152-643784	99.4%	211.35	149.37	149.37	143.02	49.26	20.66	180.36	146.20	34.96	0.67	0.59	0.14	-2.06	-1.56	Matched[2273]
YGR082W	TOM20	Component of the TOM (translocase of outer membrane) complex responsible for recognition and initial import steps for all mitochondrially directed proteins; acts as a receptor for incoming precursor proteins	Verified	chr7:644048-644599	644048-644599	98.6%	722.09	575.10	687.18	602.66	376.67	264.58	648.60	644.92	320.62	2.39	2.62	1.33	-1.01	-0.74	Covered/w/another[2274]
YGR083C	GCD2	"Delta subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression"	Verified	chr7:644864-646819	644864-646819	99.1%	373.52	294.59	261.57	244.55	90.80	105.25	334.06	253.06	98.02	1.23	1.03	0.41	-1.37	-1.04	Covered/w/another[2274]
YGR084C	MRP13	Mitochondrial ribosomal protein of the small subunit	Verified	chr7:647127-648146	647127-648146	99.2%	232.27	239.19	220.41	228.32	166.05	147.27	235.73	224.36	156.66	0.87	0.91	0.65	-0.52	-0.23	Covered/w/another[2274]
YGR085C	RPL11B	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl11Ap; involved in ribosomal assembly; depletion causes degradation of proteins and RNA of the 60S subunit; has similarity to E. coli L5 and rat L11"	Verified	chr7:648387-648911	648387-648911	23.0%	4022.11	2753.28	3217.69	2114.72	746.37	215.62	3387.70	2666.21	481.00	12.51	10.82	1.99	-2.47	-3.12	Frag<80[2275]
YGR086C	PIL1	"Primary component of eisosomes, which are large immobile cell cortex structures associated with endocytosis; null mutants show activation of Pkc1p/Ypk1p stress resistance pathways; detected in phosphorylated state in mitochondria"	Verified	chr7:649602-650621	649602-650621	99.1%	2314.98	2192.26	2898.92	2810.84	6775.70	5221.82	2253.62	2854.88	5998.76	8.32	11.59	24.85	1.07	0.38	Frag>80[2276,2277,2278]
YGR087C	PDC6	"Minor isoform of pyruvate decarboxylase, key enzyme in alcoholic fermentation, decarboxylates pyruvate to acetaldehyde, regulation is glucose- and ethanol-dependent, involved in amino acid catabolism"	Verified	chr7:651294-652985	651294-652985	97.6%	6.06	8.48	3.03	3.63	13.93	10.90	7.27	3.33	12.42	0.03	0.01	0.05	1.90	1.87	
YGR088W	CTT1	"Cytosolic catalase T, has a role in protection from oxidative damage by hydrogen peroxide"	Verified	chr7:654638-656326	654638-656326	98.8%	33.55	56.92	46.74	59.32	3864.69	4018.67	45.24	53.03	3941.68	0.17	0.22	16.33	6.22	4.79	Matched[2281]
YGR089W	NNF2	"Protein that exhibits physical and genetic interactions with Rpb8p, which is a subunit of RNA polymerases I, II, and III; computational analysis of large-scale protein-protein interaction data suggests a role in chromosome segregation"	Verified	chr7:656964-659774	656964-659774	99.0%	141.51	145.82	112.06	100.21	61.78	55.31	143.67	106.13	58.54	0.53	0.43	0.24	-0.86	-0.30	Matched[2282]
YGR090W	UTP22	"Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data"	Verified	chr7:662362-666075	662362-666075	99.1%	210.11	163.63	150.31	107.37	40.77	30.99	186.87	128.84	35.88	0.69	0.52	0.15	-1.84	-1.26	Matched[2284]
YGR091W	PRP31	"Splicing factor, component of the U4/U6-U5 snRNP complex"	Verified	chr7:666345-667829	666345-667829	98.7%	73.72	49.15	61.43	44.37	43.69	22.53	61.43	52.90	33.11	0.23	0.21	0.14	-0.68	-0.77	Covered/w/another[2285]
YGR092W	DBF2	Ser/Thr kinase involved in transcription and stress response; functions as part of a network of genes in exit from mitosis; localization is cell cycle regulated; activated by Cdc15p during the exit from mitosis	Verified	chr7:668193-669911	668193-669911	98.7%	126.11	166.77	161.47	126.11	209.79	127.29	146.44	143.79	168.54	0.54	0.58	0.70	0.23	0.65	Covered/w/another[2285]
YGR093W		Putative debranching enzyme associated ribonuclease; green fluorescent protein (GFP)-fusion protein localizes to the nucleus	Uncharacterized	chr7:670392-671915	670392-671915	98.8%	121.57	95.00	100.98	73.74	51.15	38.53	108.28	87.36	44.84	0.40	0.35	0.19	-0.96	-0.57	Matched[2286]
YGR094W	VAS1	Mitochondrial and cytoplasmic valyl-tRNA synthetase	Verified	chr7:672190-675504	672190-675504	98.8%	1140.12	933.66	955.96	955.65	281.29	256.86	1036.89	955.80	269.07	3.83	3.88	1.11	-1.83	-1.00	Matched[2287]
YGR095C	RRP46	Protein involved in rRNA processing; component of the exosome 3->5 exonuclease complex	Verified	chr7:675675-676346	675675-676346	99.1%	243.27	181.70	157.68	129.15	79.59	64.57	212.49	143.41	72.08	0.78	0.58	0.30	-0.99	-1.01	Covered/w/another[2288]
YGR096W	TPC1	Mitochondrial membrane transporter that mediates uptake of the essential cofactor thiamine pyrophosphate (ThPP) into mitochondria; expression appears to be regulated by carbon source; member of the mitochondrial carrier family	Verified	chr7:676625-677569	676625-677569	98.6%	48.29	59.03	38.64	38.64	31.12	18.24	53.66	38.64	24.68	0.20	0.16	0.10	-0.65	-0.47	Covered/w/another[2288]
YGR097W	ASK10	"Component of the RNA polymerase II holoenzyme, phosphorylated in response to oxidative stress; has a role in destruction of Ssn8p, which relieves repression of stress-response genes"	Verified	chr7:678699-682139	678699-682139	98.9%	94.63	115.79	88.46	84.64	80.82	134.60	105.21	86.55	107.71	0.39	0.35	0.45	0.32	0.84	Covered/w/another[2288]
YGR098C	ESP1	Separase with cysteine protease activity (related to caspases) that promotes sister chromatid separation by mediating dissociation of the cohesin Scc1p from chromatin; inhibited by Pds1p	Verified	chr7:682570-687462	682570-687462	99.1%	64.33	61.44	59.79	53.40	45.36	60.82	62.88	56.60	53.09	0.23	0.23	0.22	-0.09	0.15	Frag>80[2289]
YGR099W	TEL2	"Essential DNA-binding protein specific to single-stranded yeast telomeric DNA repeats, required for telomere length regulation and telomere position effect"	Verified	chr7:687903-689969	687903-689969	98.7%	74.02	76.47	62.75	69.61	72.55	59.81	75.25	66.18	66.18	0.28	0.27	0.27	0.00	0.28	Matched[2290]
YGR100W	MDR1	"Cytoplasmic GTPase-activating protein for Ypt/Rab transport GTPases Ypt6p, Ypt31p and Sec4p; involved in recycling of internalized proteins and regulation of Golgi secretory function"	Verified	chr7:690249-693101	690249-693101	98.7%	118.62	131.40	125.01	110.45	142.41	136.38	125.01	117.73	139.39	0.46	0.48	0.58	0.24	0.81	Covered/w/another[2291]
YGR101W	PCP1	Mitochondrial serine protease required for the processing of various mitochondrial proteins and maintenance of mitochondrial DNA and morphology; belongs to the rhomboid-GlpG superfamily of intramembrane peptidases	Verified	chr7:693367-694407	693367-694407	98.8%	104.97	106.91	118.58	108.86	149.68	106.91	105.94	113.72	128.30	0.39	0.46	0.53	0.17	0.12	Covered/w/another[2291]
YGR102C		"Putative protein of unknown function; transposon insertion mutant is salt sensitive and deletion mutant has growth defects; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr7:694588-695139	694588-695139	99.1%	146.21	202.86	129.76	148.04	263.17	191.90	174.54	138.90	227.54	0.64	0.56	0.94	0.71	0.71	Covered/w/another[2291]
YGR103W	NOP7	Nucleolar protein involved in rRNA processing and 60S ribosomal subunit biogenesis; constituent of several different pre-ribosomal particles; required for exit from G<sub>0</sub> and the initiation of cell proliferation	Verified	chr7:695421-697238	695421-697238	98.5%	710.53	263.45	505.13	426.43	54.70	15.07	486.99	465.78	34.88	1.80	1.89	0.14	-3.74	-2.62	Matched[2292]
YGR104C	SRB5	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation; involved in telomere maintenance	Verified	chr7:697449-698372	697449-698372	99.3%	122.10	97.03	92.67	51.24	81.77	76.32	109.57	71.95	79.04	0.40	0.29	0.33	0.14	0.30	Matched[2293]
YGR105W	VMA21	"Integral membrane protein that is required for vacuolar H+-ATPase (V-ATPase) function, although not an actual component of the V-ATPase complex; functions in the assembly of the V-ATPase; localized to the yeast endoplasmic reticulum (ER)"	Verified	chr7:698603-698836	698603-698836	98.9%	903.13	868.56	760.53	630.90	566.08	324.09	885.85	695.71	445.08	3.27	2.82	1.84	-0.64	-1.95	Matched[2294]
YGR106C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the vacuolar memebrane	Uncharacterized	chr7:698993-699790	698993-699790	99.0%	1814.02	2022.89	1722.88	1748.19	1110.19	775.99	1918.46	1735.53	943.09	7.08	7.04	3.91	-0.88	-1.09	Matched[2295]
YGR107W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr7:702671-703120	702671-703120	99.1%	4.49	6.73	13.46	6.73	33.65	11.22	5.61	10.10	22.43	0.02	0.04	0.09	1.15	0.37	Matched[2298]
YGR108W	CLB1	"B-type cyclin involved in cell cycle progression; activates Cdc28p to promote the transition from G2 to M phase; accumulates during G2 and M, then targeted via a destruction box motif for ubiquitin-mediated degradation by the proteasome"	Verified	chr7:703640-705055	703640-705055	98.6%	368.89	416.16	330.93	254.28	168.33	104.58	392.53	292.60	136.45	1.45	1.19	0.57	-1.10	-0.84	Matched[2299]
YGR109C	CLB6	B-type cyclin involved in DNA replication during S phase; activates Cdc28p to promote initiation of DNA synthesis; functions in formation of mitotic spindles along with Clb3p and Clb4p; most abundant during late G1	Verified	chr7:705363-706505	705363-706505	99.1%	72.39	61.80	73.27	42.37	17.66	19.42	67.09	57.82	18.54	0.25	0.23	0.08	-1.64	-1.25	Matched[2300]
YGR110W		Putative protein of unknown function; transcription is increased in response to genotoxic stress	Uncharacterized	chr7:713713-715050	713713-715050	98.8%	25.71	32.51	18.90	15.88	72.59	56.71	29.11	17.39	64.65	0.11	0.07	0.27	1.89	2.58	Matched[2302]
YGR111W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus	Uncharacterized	chr7:715832-717034	715832-717034	98.7%	174.37	246.81	220.70	192.90	711.80	443.93	210.59	206.80	577.87	0.78	0.84	2.39	1.48	1.58	Matched[2303]
YGR112W	SHY1	"Mitochondrial inner membrane protein required for normal respiration, possible chaperone involved in assembly of cytochrome c oxidase; similar to SURF1 from mammals, chickens, and D. melanogaster"	Verified	chr7:717362-718531	717362-718531	98.5%	66.83	96.34	78.12	92.00	170.12	98.95	81.59	85.06	134.53	0.30	0.35	0.56	0.66	1.11	Matched[2304]
YGR113W	DAM1	"Essential subunit of the Dam1 complex (aka DASH complex), couples kinetochores to the force produced by MT depolymerization thereby aiding in chromosome segregation; Ipl1p target for regulating kinetochore-MT attachments"	Verified	chr7:718897-719928	718897-719928	98.6%	205.30	202.36	181.73	192.53	199.41	126.72	203.83	187.13	163.06	0.75	0.76	0.68	-0.20	0.18	Matched[2305]
YGR116W	SPT6	Essential protein that interacts with histones and is involved in nucleosome disassembly and reassembly during transcription elongation	Verified	chr7:720413-724768	720413-724768	98.7%	381.10	318.98	333.64	345.27	212.42	258.02	350.04	339.45	235.22	1.29	1.38	0.97	-0.53	-0.19	Matched[2307]
YGR114C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; open reading frame overlaps 5' end of the essential gene SPT6"	Dubious	chr7:720269-720658	720269-720658	97.6%	330.85	257.33	257.33	249.45	236.32	291.47	294.09	253.39	263.89	1.09	1.03	1.09	0.06	-0.11	Covered/w/another[2307]
YGR115C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified and essential ORF SPT6/YGR115C"	Dubious	chr7:720376-721155	720376-721155	97.8%	329.05	267.44	266.13	289.73	201.89	267.44	298.25	277.93	234.66	1.10	1.13	0.97	-0.24	-0.10	Covered/w/another[2307]
YGR117C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr7:725053-726483	725053-726483	99.2%	152.83	166.21	145.78	133.11	161.28	102.12	159.52	139.44	131.70	0.59	0.57	0.55	-0.08	-0.07	Matched[2308]
YGR118W	RPS23A	"Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit, required for translational accuracy; nearly identical to Rps23Bp and similar to E. coli S12 and rat S23 ribosomal proteins; deletion of both RPS23A and RPS23B is lethal"	Verified	chr7:726978-727735	726978-727042,727363-727735	44.1%	6450.00	5244.83	5586.21	4753.45	3051.72	1924.14	5847.41	5169.83	2487.93	21.59	20.99	10.31	-1.06	-3.14	Matched[2309]
YGR119C	NUP57	"Nucleoporin, essential subunit of the nuclear pore complex (NPC), functions as the organizing center of an NPC subcomplex containing Nsp1p, Nup49p, Nup57p, and Nic96p"	Verified	chr7:728051-729676	728051-729676	99.2%	414.33	380.21	328.73	318.19	289.04	222.67	397.27	323.46	255.85	1.47	1.31	1.06	-0.34	-0.31	Covered/w/another[2310]
YGR120C	COG2	"Essential component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering complex that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments"	Verified	chr7:730038-730826	730038-730826	99.1%	76.71	120.18	92.05	70.32	109.95	56.25	98.44	81.18	83.10	0.36	0.33	0.34	0.03	0.06	Covered/w/another[2310]
YGR121C	MEP1	Ammonium permease; belongs to a ubiquitous family of cytoplasmic membrane proteins that transport only ammonium (NH4+); expression is under the nitrogen catabolite repression regulation	Verified	chr7:731454-732932	731454-732932	98.8%	91.00	112.21	89.63	95.79	80.05	65.00	101.61	92.71	72.53	0.38	0.38	0.30	-0.35	0.54	Matched[2311]
YGR121W-A		Putative protein of unknown function	Uncharacterized	chr7:733417-733632	733417-733632	98.8%	9.37	9.37	4.69	9.37	4.69	28.11	9.37	7.03	16.40	0.03	0.03	0.07	1.22	NaN	Covered/w/another[2311]
YGR122W		Putative protein of unknown function; deletion mutants do not properly process Rim101p and have decreased resistance to rapamycin; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr7:733940-735148	733940-735148	98.9%	106.17	130.41	91.96	89.45	86.11	52.67	118.29	90.70	69.39	0.44	0.37	0.29	-0.39	-0.09	Matched[2312]
YGR122C-A		"Dubious open reading frame unlikely to encode a functional protein, similar to YLR334C and YOL106W"	Dubious	chr7:735635-735763	735635-735763	46.1%	33.66	67.32	67.32	16.83	16.83	84.15	50.49	42.08	50.49	0.19	0.17	0.21	0.26	-0.16	Matched[2313]
YGR123C	PPT1	Protein serine/threonine phosphatase with similarity to human phosphatase PP5; present in both the nucleus and cytoplasm; expressed during logarithmic growth	Verified	chr7:736667-738208	736667-738208	99.2%	227.47	132.04	164.07	151.65	16.99	11.11	179.75	157.86	14.05	0.66	0.64	0.06	-3.49	-2.60	Matched[2314]
YGR124W	ASN2	"Asparagine synthetase, isozyme of Asn1p; catalyzes the synthesis of L-asparagine from L-aspartate in the asparagine biosynthetic pathway"	Verified	chr7:739949-741667	739949-741667	90.6%	1291.79	1001.45	1154.97	1168.46	374.50	350.09	1146.62	1161.72	362.29	4.23	4.72	1.50	-1.68	-1.17	Matched[2315]
YGR125W		Putative protein of unknown function; deletion mutant has decreased rapamycin resistance but normal wormannin resistance; green fluorescent protein (GFP)-fusion protein localizes to the vacuole	Uncharacterized	chr7:742330-745440	742330-745440	98.9%	118.00	139.77	101.74	105.32	111.17	109.87	128.89	103.53	110.52	0.48	0.42	0.46	0.09	0.68	Matched[2316]
YGR126W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus and is induced in response to the DNA-damaging agent MMS	Uncharacterized	chr7:745840-746532	745840-746532	98.7%	26.32	36.55	29.24	20.47	52.63	27.78	31.43	24.86	40.21	0.12	0.10	0.17	0.69	0.12	Matched[2317]
YGR127W		"Putative protein of unknown function; expression is regulated by Msn2p/Msn4p, indicating a possible role in stress response"	Uncharacterized	chr7:746803-747741	746803-747741	98.8%	134.67	143.29	151.91	119.59	741.25	547.32	138.98	135.75	644.28	0.51	0.55	2.67	2.25	2.22	Matched[2318]
YGR128C	UTP8	Nucleolar protein required for export of tRNAs from the nucleus; also copurifies with the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA	Verified	chr7:747955-750096	747955-750096	99.2%	206.17	135.10	126.62	122.39	13.65	1.88	170.64	124.50	7.77	0.63	0.51	0.03	-4.00	-2.23	Matched[2319]
YGR129W	SYF2	Component of the spliceosome complex involved in pre-mRNA splicing; involved in regulation of cell cycle progression	Verified	chr7:750405-751052	750405-751052	98.0%	72.47	75.62	74.04	69.32	59.87	63.02	74.04	71.68	61.44	0.27	0.29	0.25	-0.22	-0.43	Covered/w/another[2320]
YGR130C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; specifically phosphorylated in vitro by mammalian diphosphoinositol pentakisphosphate (IP7)	Uncharacterized	chr7:751399-753849	751399-753849	98.4%	319.77	398.98	473.22	529.21	1045.57	1024.00	359.38	501.22	1034.79	1.33	2.03	4.29	1.05	1.39	Covered/w/another[2320]
YGR131W		"Protein of unknown function; expression induced in response to ketoconazole; promoter region contains a sterol regulatory element motif, which has been identified as a Upc2p-binding site"	Uncharacterized	chr7:754731-755255	754731-755255	98.8%	25.06	46.27	25.06	15.42	94.47	57.84	35.67	20.24	76.16	0.13	0.08	0.32	1.91	1.46	Covered/w/another[2320]
YGR132C	PHB1	"Subunit of the prohibitin complex (Phb1p-Phb2p), a 1.2 MDa ring-shaped inner mitochondrial membrane chaperone that stabilizes newly synthesized proteins; determinant of replicative life span; involved in mitochondrial segregation"	Verified	chr7:755594-756457	755594-756457	99.2%	736.18	681.35	698.85	735.02	1144.52	743.18	708.76	716.93	943.85	2.62	2.91	3.91	0.40	0.60	Covered/w/another[2320]
YGR133W	PEX4	Peroxisomal ubiquitin conjugating enzyme required for peroxisomal matrix protein import and peroxisome biogenesis	Verified	chr7:756901-757452	756901-757452	98.6%	97.34	104.69	86.32	78.98	176.32	84.49	101.02	82.65	130.40	0.37	0.34	0.54	0.66	0.16	Covered/w/another[2320]
YGR134W	CAF130	"Part of the evolutionarily-conserved CCR4-NOT transcriptional regulatory complex involved in controlling mRNA initiation, elongation, and degradation"	Verified	chr7:757775-761143	757775-761143	98.8%	61.59	50.78	46.27	41.16	45.37	35.75	56.18	43.72	40.56	0.21	0.18	0.17	-0.11	0.24	Covered/w/another[2320]
YGR135W	PRE9	20S proteasome beta-type subunit; the only nonessential 20S subunit	Verified	chr7:761397-762173	761397-762173	98.5%	1128.49	881.63	1088.00	965.22	1673.14	843.76	1005.06	1026.61	1258.45	3.71	4.17	5.21	0.29	-0.08	Covered/w/another[2320]
YGR136W	LSB1	"Protein containing an N-terminal SH3 domain; binds Las17p, which is a homolog of human Wiskott-Aldrich Syndrome protein involved in actin patch assembly and actin polymerization"	Verified	chr7:762433-763158	762433-763158	98.8%	370.88	407.13	361.12	365.31	1544.88	1254.87	389.01	363.21	1399.87	1.44	1.47	5.80	1.95	1.86	Covered/w/another[2320]
YGR137W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr7:762893-763267	762893-763267	98.7%	434.79	507.71	415.89	321.37	1809.38	1396.20	471.25	368.63	1602.79	1.74	1.50	6.64	2.12	1.89	Covered/w/another[2320]
YGR138C	TPO2	Polyamine transport protein specific for spermine; localizes to the plasma membrane; transcription of TPO2 is regulated by Haa1p; member of the major facilitator superfamily	Verified	chr7:763767-765611	763767-765611	38.7%	152.77	294.32	57.46	54.66	32.24	72.88	223.55	56.06	52.56	0.83	0.23	0.22	-0.09	-0.12	Frag<80[2321]
YGR139W		"Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr7:765731-766069	765731-766069	98.8%	74.65	95.56	20.90	20.90	14.93	44.79	85.11	20.90	29.86	0.31	0.08	0.12	0.51	-0.02	Matched[2321]
YGR140W	CBF2	"Essential kinetochore protein, component of the CBF3 multisubunit complex that binds to the CDEIII region of the centromere; Cbf2p also binds to the CDEII region possibly forming a different multimeric complex, ubiquitinated in vivo"	Verified	chr7:767434-770304	767434-770304	98.9%	70.42	61.26	46.12	40.84	46.83	31.69	65.84	43.48	39.26	0.24	0.18	0.16	-0.15	-0.80	Frag>80[2322]
YGR141W	VPS62	Vacuolar protein sorting (VPS) protein required for cytoplasm to vacuole targeting of proteins	Verified	chr7:770574-771977	770574-771977	98.3%	109.41	131.88	121.73	113.76	413.02	273.17	120.64	117.75	343.10	0.45	0.48	1.42	1.54	-1.21	Frag>80[2323,2324]
YGR142W	BTN2	"v-SNARE binding protein that facilitates specific protein retrieval from a late endosome to the Golgi; modulates arginine uptake, possible role in mediating pH homeostasis between the vacuole and plasma membrane H(+)-ATPase"	Verified	chr7:772459-773691	772459-773691	98.5%	78.21	67.51	89.73	97.14	11137.65	6564.54	72.86	93.44	8851.10	0.27	0.38	36.67	6.57	4.97	Matched[2325]
YGR143W	SKN1	Protein involved in sphingolipid biosynthesis; type II membrane protein with similarity to Kre6p	Verified	chr7:775198-777513	775198-777513	98.1%	161.16	189.34	176.13	151.03	242.62	209.59	175.25	163.58	226.10	0.65	0.66	0.94	0.47	0.88	Matched[2327]
YGR144W	THI4	"Thiazole synthase, catalyzes formation of the thiazole moiety of thiamin pyrophosphate; required for thiamine biosynthesis and for mitochondrial genome stability"	Verified	chr7:780404-781384	780404-781384	98.8%	15.47	11.35	2.06	12.38	16.51	6.19	13.41	7.22	11.35	0.05	0.03	0.05	0.65	0.36	Frag<80[2329]
YGR145W	ENP2	"Essential nucleolar protein of unknown function; contains WD repeats, interacts with Mpp10p and Bfr2p, and has homology to Spb1p"	Verified	chr7:781772-783895	781772-783895	98.5%	206.54	92.27	115.70	95.62	16.26	16.73	149.41	105.66	16.49	0.55	0.43	0.07	-2.68	-2.04	Covered[2330]
YGR146C		Putative protein of unknown function; induced by iron homeostasis transcription factor Aft2p; multicopy suppressor of a temperature sensitive <i>hsf1</i> mutant	Uncharacterized	chr7:784228-784863	784228-784863	98.7%	127.47	176.87	125.88	92.42	863.63	788.74	152.17	109.15	826.19	0.56	0.44	3.42	2.92	3.47	Frag>80[2331,2332,2333]
YGR146C-A		Putative protein of unknown function	Uncharacterized	chr7:785281-785442	785281-785442	98.0%	12.60	37.81	12.60	25.20	25.20	25.20	25.20	18.90	25.20	0.09	0.08	0.10	0.42	NaN	Matched[2333]
YGR147C	NAT2	"N alpha-acetyl-transferase, transfers acetyl group from acetyl coenzyme A to the N-terminal methionine residues of proteins"	Verified	chr7:786059-786925	786059-786925	99.1%	276.96	285.10	269.98	231.57	300.23	154.77	281.03	250.78	227.50	1.04	1.02	0.94	-0.14	-0.51	Matched[2335]
YGR148C	RPL24B	"Ribosomal protein L30 of the large (60S) ribosomal subunit, nearly identical to Rpl24Ap and has similarity to rat L24 ribosomal protein; not essential for translation but may be required for normal translation rate"	Verified	chr7:787317-788184	787317-787791,788183-788184	63.9%	8782.73	7474.17	7621.75	6457.50	2902.43	2630.23	8128.45	7039.63	2766.33	30.01	28.58	11.46	-1.35	-2.40	Matched[2336]
YGR149W		Putative protein of unknown function; predicted to be an integal membrane protein	Uncharacterized	chr7:789036-790334	789036-790334	99.2%	92.35	146.68	113.31	124.17	216.52	149.78	119.51	118.74	183.15	0.44	0.48	0.76	0.63	0.97	Matched[2337]
YGR150C		"Protein of unknown function, contains PPR motifs; mutant has growth defects on both non-fermentable carbon sources and rich medium; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr7:790464-793058	790464-793058	99.3%	113.32	120.30	110.60	107.88	79.94	56.66	116.81	109.24	68.30	0.43	0.44	0.28	-0.68	-0.62	Matched[2338]
YGR151C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps almost completely with the verified ORF RSR1/BUD1/YGR152C"	Dubious	chr7:794660-794995	794660-794995	99.1%	348.35	231.23	333.33	228.23	162.16	81.08	289.79	280.78	121.62	1.07	1.14	0.50	-1.21	-0.92	Matched[2339]
YGR152C	RSR1	"GTP-binding protein of the ras superfamily required for bud site selection, morphological changes in response to mating pheromone, and efficient cell fusion; localized to the plasma membrane; significantly similar to mammalian Rap GTPases"	Verified	chr7:794679-795497	794679-795497	99.4%	271.50	192.87	264.13	216.22	114.25	71.25	232.19	240.17	92.75	0.86	0.97	0.38	-1.37	-1.19	Matched[2339]
YGR153W		Putative protein of unknown function	Uncharacterized	chr7:796097-796750	796097-796750	98.1%	28.04	32.72	43.62	34.27	65.43	71.67	30.38	38.95	68.55	0.11	0.16	0.28	0.82	0.23	Covered/w/another[2340]
YGR154C	GTO1	Omega-class glutathione transferase; induced under oxidative stress; putative peroxisomal localization	Verified	chr7:796803-797873	796803-797873	99.2%	53.66	69.66	55.54	40.48	67.78	31.06	61.66	48.01	49.42	0.23	0.19	0.20	0.04	0.47	Matched[2340]
YGR155W	CYS4	"Cystathionine beta-synthase, catalyzes the synthesis of cystathionine from serine and homocysteine, the first committed step in cysteine biosynthesis"	Verified	chr7:798548-800071	798548-800071	98.9%	1252.86	1144.09	1079.09	981.60	453.66	368.10	1198.47	1030.34	410.88	4.42	4.18	1.70	-1.33	-0.80	Matched[2341]
YGR156W	PTI1	Pta1p Interacting protein	Verified	chr7:800551-801828	800551-801828	99.1%	144.55	107.42	110.58	94.78	77.41	49.76	125.98	102.68	63.58	0.47	0.42	0.26	-0.69	0.04	Matched[2342]
YGR157W	CHO2	"Phosphatidylethanolamine methyltransferase (PEMT), catalyzes the first step in the conversion of phosphatidylethanolamine to phosphatidylcholine during the methylation pathway of phosphatidylcholine biosynthesis"	Verified	chr7:802445-805054	802445-805054	99.1%	376.27	297.00	398.32	336.83	275.73	265.29	336.64	367.57	270.51	1.24	1.49	1.12	-0.44	0.24	Matched[2343]
YGR158C	MTR3	"3'5' exoribonuclease, exosome subunit; nucleolar protein involved in export of mRNA and ribosomal subunits; homologous to the E. coli exonuclease RNase PH"	Verified	chr7:805274-806026	805274-806026	98.9%	283.27	210.77	189.29	142.31	25.51	18.80	247.02	165.80	22.15	0.91	0.67	0.09	-2.90	-2.41	Matched[2344]
YGR160W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr7:807078-807689	807078-807689	98.5%	1225.37	583.67	701.40	548.85	71.30	18.24	904.52	625.12	44.77	3.34	2.54	0.19	-3.80	-0.41	Matched[2346]
YGR159C	NSR1	"Nucleolar protein that binds nuclear localization sequences, required for pre-rRNA processing and ribosome biogenesis"	Verified	chr7:806417-807661	806417-807661	98.7%	1465.82	673.09	822.84	631.58	80.58	18.72	1069.45	727.21	49.65	3.95	2.95	0.21	-3.87	-3.15	Frag>80[2345,2346,2347]
YGR161C	RTS3	Putative component of the protein phosphatase type 2A complex	Uncharacterized	chr7:808634-809425	808634-809425	98.4%	87.29	335.04	136.07	119.38	1046.21	655.97	211.17	127.73	851.09	0.78	0.52	3.53	2.74	2.42	Frag>80[2347,2348,2349]
YGR161W-C		Putative protein of unknown function; identified by sequence comparison with hemiascomycetous yeast species	Uncharacterized	chr7:810232-810510	810232-810510	98.1%	62.13	113.29	124.26	102.33	712.65	515.30	87.71	113.29	613.98	0.32	0.46	2.54	2.44	NaN	Matched[2350]
YGR162W	TIF4631	"Translation initiation factor eIF4G, subunit of the mRNA cap-binding protein complex (eIF4F) that also contains eIF4E (Cdc33p); associates with the poly(A)-binding protein Pab1p, also interacts with eIF4A (Tif1p); homologous to Tif4632p"	Verified	chr7:824064-826922	824064-826922	98.4%	726.06	491.14	494.34	471.24	83.87	72.14	608.60	482.79	78.01	2.25	1.96	0.32	-2.63	-2.20	Covered/w/another[2352]
YGR163W	GTR2	"Cytoplasmic GTP binding protein that negatively regulates Ran/Tc4 GTPase cycle; subunit of EGO complex, which is involved in microautophagy regulation, and of GSE complex, required for sorting of Gap1p; homolog of human RagC and RagD"	Verified	chr7:827557-828582	827557-828582	98.7%	196.54	188.64	166.91	159.01	233.09	133.33	192.59	162.96	183.21	0.71	0.66	0.76	0.17	0.29	Covered/w/another[2352]
YGR164W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr7:828630-828965	828630-828965	76.5%	15.55	3.89	15.55	3.89	19.44	7.78	9.72	9.72	13.61	0.04	0.04	0.06	0.49	0.18	Overlap[2352]
YGR165W	MRPS35	Mitochondrial ribosomal protein of the small subunit	Verified	chr7:829121-830158	829121-830158	98.7%	251.92	239.23	238.25	271.45	240.21	177.71	245.58	254.85	208.96	0.91	1.03	0.87	-0.29	-0.14	Frag>80[2353,2354]
YGR166W	KRE11	"Protein involved in biosynthesis of cell wall beta-glucans; subunit of the TRAPP (transport protein particle) complex, which is involved in the late steps of endoplasmic reticulum to Golgi transport"	Verified	chr7:830520-832202	830520-832202	99.1%	125.89	96.52	95.32	82.73	61.75	55.75	111.20	89.02	58.75	0.41	0.36	0.24	-0.60	-0.67	Matched[2355]
YGR167W	CLC1	"Clathrin light chain, subunit of the major coat protein involved in intracellular protein transport and endocytosis; thought to regulate clathrin function, two Clathrin heavy chains (CHC1) form the clathrin triskelion structural component"	Verified	chr7:832461-833162	832461-833162	98.3%	1028.92	1137.61	1014.43	1140.51	1631.79	1305.72	1083.27	1077.47	1468.75	4.00	4.37	6.09	0.45	0.67	Matched[2356]
YGR168C		Putative protein of unknown function; YGR168C is not an essential gene	Uncharacterized	chr7:833357-834487	833357-834487	99.1%	105.24	105.24	99.88	74.91	150.72	74.02	105.24	87.40	112.37	0.39	0.35	0.47	0.36	0.08	Frag<80[2357]
YGR169C	PUS6	Pseudouridine synthase responsible for modification of cytoplasmic and mitochondrial tRNAs at position 31; mutation of Asp168 to Ala abolishes enzyme activity; not essential for viability	Verified	chr7:834694-835908	834694-835908	99.3%	81.26	84.58	69.65	68.82	63.85	41.46	82.92	69.24	52.66	0.31	0.28	0.22	-0.40	-0.25	Covered[2358]
YGR169C-A		Putative protein of unknown function	Uncharacterized	chr7:836392-836670	836392-836670	99.6%	604.77	597.57	633.57	428.38	885.56	565.17	601.17	530.97	725.36	2.22	2.16	3.01	0.45	NaN	Matched[2360]
YGR170W	PSD2	"Phosphatidylserine decarboxylase of the Golgi and vacuolar membranes, converts phosphatidylserine to phosphatidylethanolamine"	Verified	chr7:837147-840563	837147-840563	98.8%	132.16	172.16	133.05	136.01	120.60	146.09	152.16	134.53	133.34	0.56	0.55	0.55	-0.01	0.43	Matched[2361]
YGR171C	MSM1	"Mitochondrial methionyl-tRNA synthetase (MetRS), functions as a monomer in mitochondrial protein synthesis; functions similarly to cytoplasmic MetRS although the cytoplasmic form contains a zinc-binding domain not found in Msm1p"	Verified	chr7:840829-842556	840829-842556	99.1%	79.38	89.89	81.13	77.63	71.79	56.62	84.63	79.38	64.20	0.31	0.32	0.27	-0.31	0.03	Matched[2362]
YGR172C	YIP1	"Integral membrane protein required for the biogenesis of ER-derived COPII transport vesicles; interacts with Yif1p and Yos1p; localizes to the Golgi, the ER, and COPII vesicles"	Verified	chr7:842850-843596	842850-843596	98.7%	360.70	364.77	336.29	290.19	172.21	108.48	362.73	313.24	140.35	1.34	1.27	0.58	-1.16	-1.08	Frag>80[2363,2364]
YGR173W	RBG2	Protein with similarity to mammalian developmentally regulated GTP-binding protein	Uncharacterized	chr7:843859-844965	843859-844965	98.5%	260.36	184.27	197.10	164.10	33.92	21.09	222.32	180.60	27.50	0.82	0.73	0.11	-2.72	-2.24	Matched[2365]
YGR174C	CBP4	Mitochondrial protein required for assembly of ubiquinol cytochrome-c reductase complex (cytochrome bc1 complex); interacts with Cbp3p and function is partially redundant with that of Cbp3p	Verified	chr7:845898-846410	845898-846410	99.3%	235.54	268.91	255.17	263.02	885.25	453.42	252.23	259.10	669.34	0.93	1.05	2.77	1.37	0.83	Matched[2366]
YGR174W-A		Putative protein of unknown function	Uncharacterized	chr7:846660-846746	846660-846746	99.0%	69.67	92.89	34.83	116.11	603.77	359.94	81.28	75.47	481.86	0.30	0.31	2.00	2.67	NaN	Matched[2367]
YGR175C	ERG1	"Squalene epoxidase, catalyzes the epoxidation of squalene to 2,3-oxidosqualene; plays an essential role in the ergosterol-biosynthesis pathway and is the specific target of the antifungal drug terbinafine"	Verified	chr7:846938-848428	846938-848428	99.0%	1072.27	1602.98	904.18	908.24	469.71	441.92	1337.63	906.21	455.82	4.94	3.68	1.89	-0.99	-0.83	Matched[2368]
YGR176W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr7:848725-849072	848725-849072	98.5%	67.09	116.67	61.25	26.25	14.58	20.42	91.88	43.75	17.50	0.34	0.18	0.07	-1.32	0.11	Covered/w/another[2369]
YGR177C	ATF2	"Alcohol acetyltransferase, may play a role in steroid detoxification; forms volatile esters during fermentation, which is important in brewing"	Verified	chr7:848834-850441	848834-850441	99.0%	56.56	99.92	39.59	23.88	13.83	13.83	78.24	31.74	13.83	0.29	0.13	0.06	-1.20	-1.41	Matched[2369]
YGR178C	PBP1	Protein interacting with poly(A)-binding protein Pab1p; likely involved in controlling the extent of mRNA polyadenylation; forms a complex with Mkt1p that may regulate HO translation; interacts with Lsm12p in a copurification assay	Verified	chr7:851052-853220	851052-853220	99.1%	432.88	420.77	431.48	412.86	515.73	558.55	426.83	422.17	537.14	1.58	1.71	2.23	0.35	1.03	Frag>80[2370,2371]
YGR179C	OKP1	"Outer kinetochore protein, required for accurate mitotic chromosome segregation; component of the kinetochore sub-complex COMA (Ctf19p, Okp1p, Mcm21p, Ame1p) that functions as a platform for kinetochore assembly"	Verified	chr7:853680-854900	853680-854900	99.2%	91.61	84.18	75.10	85.83	78.40	54.47	87.90	80.47	66.44	0.32	0.33	0.28	-0.28	0.17	Matched[2372]
YGR180C	RNR4	"Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits"	Verified	chr7:855269-856306	855269-856306	98.9%	2451.94	3316.36	2414.91	2495.80	1710.32	1786.33	2884.15	2455.35	1748.33	10.65	9.97	7.24	-0.49	0.11	Frag>80[2373,2374]
YGR181W	TIM13	"Mitochondrial intermembrane space protein, forms a complex with TIm8p that mediates import and insertion of a subset of polytopic inner membrane proteins; may prevent aggregation of incoming proteins in a chaperone-like manner"	Verified	chr7:858292-858609	858292-858609	98.8%	525.41	560.44	598.65	531.78	439.43	318.43	542.92	565.21	378.93	2.00	2.29	1.57	-0.58	-0.42	Matched[2375]
YGR182C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF TIM13/YGR181W"	Dubious	chr7:858556-858909	858556-858909	99.2%	757.21	742.97	853.99	828.37	1423.32	680.35	750.09	841.18	1051.83	2.77	3.41	4.36	0.32	-2.09	Frag>80[2375,2376]
YGR183C	QCR9	"Subunit 9 of the ubiquinol cytochrome-c reductase complex, which is a component of the mitochondrial inner membrane electron transport chain; required for electron transfer at the ubiquinol oxidase site of the complex"	Verified	chr7:859068-859481	859068-859265,859479-859481	99.1%	627.48	898.56	858.40	953.78	2309.14	1295.13	763.02	906.09	1802.13	2.82	3.68	7.47	0.99	0.14	Frag>80[2376,2377]
YGR184C	UBR1	"Ubiquitin-protein ligase (E3) that interacts with Rad6p/Ubc2p to ubiquitinate substrates of the N-end rule pathway; binds to the Rpn2p, Rpt1p, and Rpt6p proteins of the 19S particle of the 26S proteasome"	Verified	chr7:859906-865758	859906-865758	99.2%	111.08	107.98	102.30	90.42	73.54	97.13	109.53	96.36	85.34	0.40	0.39	0.35	-0.18	0.41	Frag>80[2377,2378,2379]
YGR185C	TYS1	"Cytoplasmic tyrosyl-tRNA synthetase, class I aminoacyl-tRNA synthetase that aminoacylates tRNA(Tyr), required for cytoplasmic protein synthesis, interacts with positions 34 and 35 of the anticodon of tRNATyr"	Verified	chr7:866341-867525	866341-867525	99.0%	1065.64	902.81	934.36	908.78	614.66	601.88	984.23	921.57	608.27	3.63	3.74	2.52	-0.60	-0.29	Matched[2380]
YGR186W	TFG1	TFIIF (Transcription Factor II) largest subunit; involved in both transcription initiation and elongation of RNA polymerase II; homologous to human RAP74	Verified	chr7:867779-869986	867779-869986	98.2%	344.18	408.31	353.41	375.09	405.54	386.17	376.25	364.25	395.86	1.39	1.48	1.64	0.12	0.82	Matched[2381]
YGR187C	HGH1	Protein of unknown function with similarity to human HMG1 and HMG2; localizes to the cytoplasm	Verified	chr7:870237-871421	870237-871421	99.3%	259.27	147.91	158.11	124.96	30.60	12.75	203.59	141.54	21.68	0.75	0.57	0.09	-2.71	-2.95	Matched[2382]
YGR188C	BUB1	"Protein kinase that forms a complex with Mad1p and Bub3p that is crucial in the checkpoint mechanism required to prevent cell cycle progression into anaphase in the presence of spindle damage, associates with centromere DNA via Skp1p"	Verified	chr7:872049-875114	872049-875114	99.3%	40.74	28.25	26.28	12.48	20.04	39.75	34.50	19.38	29.90	0.13	0.08	0.12	0.63	0.91	Frag>80[2383,2384,2385]
YGR189C	CRH1	"Cell wall protein that functions in the transfer of chitin to beta(1-6)glucan, putative chitin transglycosidase"	Verified	chr7:876674-878197	876674-878197	97.4%	866.72	780.45	818.87	677.34	533.78	386.86	823.59	748.10	460.32	3.04	3.04	1.91	-0.70	-0.22	Frag>80[2386,2387]
YGR191W	HIP1	"High-affinity histidine permease, also involved in the transport of manganese ions"	Verified	chr7:880425-882236	880425-882236	98.9%	278.03	249.56	239.51	197.08	94.35	92.68	263.79	218.29	93.51	0.97	0.89	0.39	-1.22	-0.66	Frag>80[2388,2389]
YGR190C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene HIP1/YGR191W"	Dubious	chr7:880301-880666	880301-880666	99.2%	146.04	157.06	129.51	132.26	38.58	77.15	151.55	130.88	57.86	0.56	0.53	0.24	-1.18	-0.25	Covered/w/another[2388]
YGR192C	TDH3	"Glyceraldehyde-3-phosphate dehydrogenase, isozyme 3, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall"	Verified	chr7:882817-883815	882817-883815	30.2%	74272.28	73532.55	71479.19	65607.74	83553.83	62283.89	73902.41	68543.47	72918.86	272.81	278.23	302.13	0.09	-2.26	Frag>80[2390,2391,2392]
YGR193C	PDX1	"Dihydrolipoamide dehydrogenase (E3)-binding protein (E3BP) of the mitochondrial pyruvate dehydrogenase (PDH) complex, plays a structural role in the complex by binding and positioning E3 to the dihydrolipoamide acetyltransferase (E2) core"	Verified	chr7:884514-885746	884514-885746	99.1%	319.07	322.35	344.43	309.26	346.89	307.62	320.71	326.85	327.25	1.18	1.33	1.36	0.00	0.73	Matched[2393]
YGR194C	XKS1	"Xylulokinase, converts D-xylulose and ATP to xylulose 5-phosphate and ADP; rate limiting step in fermentation of xylulose; required for xylose fermentation by recombinant S. cerevisiae strains"	Verified	chr7:886078-887880	886078-887880	99.0%	107.00	183.74	165.26	191.03	633.02	484.01	145.37	178.14	558.52	0.54	0.72	2.31	1.65	1.82	Frag>80[2394,2395,2396]
YGR195W	SKI6	3'-to-5' phosphorolytic exoribonuclease that is a subunit of the exosome; required for 3' processing of the 5.8S rRNA; involved in 3' to 5' mRNA degradation and translation inhibition of non-poly(A) mRNAs	Verified	chr7:888887-889627	888887-889627	98.5%	261.63	212.32	226.01	171.22	106.84	86.30	236.97	198.62	96.57	0.87	0.81	0.40	-1.04	-0.50	Covered/w/another[2397]
YGR196C	FYV8	"Protein of unknown function, required for survival upon exposure to K1 killer toxin"	Verified	chr7:889738-892191	889738-892191	99.4%	111.14	117.29	94.74	90.23	103.76	91.46	114.22	92.48	97.61	0.42	0.38	0.40	0.08	0.22	Covered/w/another[2397]
YGR197C	SNG1	Protein involved in nitrosoguanidine (MNNG) resistance; expression is regulated by transcription factors involved in multidrug resistance	Verified	chr7:892502-894145	892502-894145	98.9%	54.12	63.96	39.36	35.05	69.49	62.11	59.04	37.21	65.80	0.22	0.15	0.27	0.82	1.17	Covered/w/another[2398]
YGR198W	YPP1	"Cargo-transport protein involved in endocytosis; may interact with ribosomes, based on co-purification experiments; GFP-fusion protein localizes to the cytoplasm; YGR198W is an essential gene"	Verified	chr7:894698-897151	894698-897151	98.9%	129.73	147.03	107.49	102.55	139.20	130.14	138.38	105.02	134.67	0.51	0.43	0.56	0.36	0.40	Covered/w/another[2398]
YGR199W	PMT6	"Protein O-mannosyltransferase, transfers mannose from dolichyl phosphate-D-mannose to protein serine/threonine residues of secretory proteins; reaction is essential for cell wall rigidity; member of a family of mannosyltransferases"	Verified	chr7:897507-899786	897507-899786	98.9%	192.85	192.40	165.36	151.17	163.14	133.00	192.63	158.27	148.07	0.71	0.64	0.61	-0.10	0.17	Frag>80[2399,2400]
YGR200C	ELP2	"Subunit of Elongator complex, which is required for modification of wobble nucleosides in tRNA; target of Kluyveromyces lactis zymocin"	Verified	chr7:899909-902275	899909-902275	99.2%	225.34	147.81	167.41	115.86	19.59	7.67	186.57	141.64	13.63	0.69	0.57	0.06	-3.38	-2.59	Matched[2401]
YGR201C		Putative protein of unknown function	Uncharacterized	chr7:902525-903202	902525-903202	98.9%	85.02	129.77	108.89	73.09	310.25	214.79	107.40	90.99	262.52	0.40	0.37	1.09	1.53	1.71	Matched[2402]
YGR202C	PCT1	"Cholinephosphate cytidylyltransferase, also known as CTP:phosphocholine cytidylyltransferase, rate-determining enzyme of the CDP-choline pathway for phosphatidylcholine synthesis, inhibited by Sec14p, activated upon lipid-binding"	Verified	chr7:903479-904753	903479-904753	99.1%	261.21	356.98	288.91	282.58	210.55	201.84	309.09	285.74	206.19	1.14	1.16	0.85	-0.47	0.19	Matched[2403]
YGR203W		Putative protein with sequence similarity to protein tyrosine phosphatases of the CDC25-like phosphatase family; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus	Uncharacterized	chr7:905242-905688	905242-905688	97.9%	182.72	166.73	173.58	116.48	223.83	91.36	174.72	145.03	157.59	0.64	0.59	0.65	0.12	0.23	Covered/w/another[2404]
YGR204W	ADE3	"Cytoplasmic trifunctional enzyme C1-tetrahydrofolate synthase, involved in single carbon metabolism and required for biosynthesis of purines, thymidylate, methionine, and histidine"	Verified	chr7:905939-908779	905939-908779	98.4%	1082.05	1133.91	1197.94	1020.88	382.38	463.94	1107.98	1109.41	423.16	4.09	4.50	1.75	-1.39	-0.77	Covered/w/another[2404]
YGR204C-A		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr7:909066-909179	909066-909179	98.5%	160.36	213.81	160.36	213.81	276.17	169.27	187.08	187.08	222.72	0.69	0.76	0.92	0.25	NaN	Covered/w/another[2405]
YGR205W		ATP-binding protein of unknown function; crystal structure resembles that of E.coli pantothenate kinase and other small kinases	Verified	chr7:909218-910090	909218-910090	98.7%	219.28	331.82	258.73	287.73	565.02	384.03	275.55	273.23	474.52	1.02	1.11	1.97	0.80	0.74	Matched[2405]
YGR206W	MVB12	ESCRT-I subunit necessary for the efficient transport of cargo proteins to the vacuolar lumen; deletion mutant sensitive to rapamycin and nystatin; green fluorescent protein (GFP)-fusion protein localizes to endosome	Verified	chr7:910437-910742	910437-910742	99.0%	188.07	194.67	194.67	171.57	428.92	227.66	191.37	183.12	328.29	0.71	0.74	1.36	0.84	0.40	Matched[2406]
YGR207C		"Protein that interacts with frataxin (Yfh1p); putative homolog of mammalian electron transfer flavoprotein complex subunit ETF-beta; authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr7:910848-911633	910848-911633	99.3%	514.97	439.39	570.06	538.03	555.96	399.68	477.18	554.04	477.82	1.76	2.25	1.98	-0.21	-0.16	Matched[2407]
YGR208W	SER2	"Phosphoserine phosphatase of the phosphoglycerate pathway, involved in serine and glycine biosynthesis, expression is regulated by the available nitrogen source"	Verified	chr7:911888-912817	911888-912817	98.6%	650.24	490.95	564.05	447.31	268.39	150.56	570.60	505.68	209.47	2.11	2.05	0.87	-1.27	-1.05	Matched[2408]
YGR209C	TRX2	"Cytoplasmic thioredoxin isoenzyme of the thioredoxin system which protects cells against oxidative and reductive stress, forms LMA1 complex with Pbi2p, acts as a cofactor for Tsa1p, required for ER-Golgi transport and vacuole inheritance"	Verified	chr7:912918-913232	912918-913232	97.8%	4918.75	3001.22	4814.92	3247.80	9636.34	4947.95	3959.98	4031.36	7292.15	14.62	16.36	30.21	0.86	-0.66	Matched[2409]
YGR210C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr7:913508-914743	913508-914743	99.2%	304.31	255.36	289.63	229.26	770.17	770.98	279.84	259.44	770.57	1.03	1.05	3.19	1.57	2.01	Matched[2410]
YGR211W	ZPR1	"Essential protein with two zinc fingers, present in the nucleus of growing cells but relocates to the cytoplasm in starved cells via a process mediated by Cpr1p; binds to translation elongation factor eEF-1 (Tef1p)"	Verified	chr7:915246-916706	915246-916706	98.5%	327.22	175.07	211.89	204.94	2052.22	5665.49	251.14	208.42	3858.85	0.93	0.85	15.99	4.21	3.72	Matched[2411]
YGR212W	SLI1	"N-acetyltransferase, confers resistance to the sphingolipid biosynthesis inhibitor myriocin (ISP-1) by converting it into N-acetyl-myriocin, co-operates with Ypk1p in mediating resistance to myriocin"	Verified	chr7:917045-918451	917045-918451	99.1%	35.16	40.90	39.46	33.01	38.75	25.11	38.03	36.23	31.93	0.14	0.15	0.13	-0.18	0.35	
YGR213C	RTA1	Protein involved in 7-aminocholesterol resistance; has seven potential membrane-spanning regions	Verified	chr7:918517-919470	918517-919470	99.0%	48.72	60.37	23.30	27.54	31.77	16.94	54.54	25.42	24.36	0.20	0.10	0.10	-0.06	1.50	
YGR214W	RPS0A	"Protein component of the small (40S) ribosomal subunit, nearly identical to Rps0Bp; required for maturation of 18S rRNA along with Rps0Bp; deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal"	Verified	chr7:920580-921793	920580-920669,921125-921793	79.4%	7495.23	5720.53	6563.10	5869.80	1620.46	1658.60	6607.88	6216.45	1639.53	24.39	25.23	6.79	-1.92	-2.31	Matched[2412]
YGR215W	RSM27	Mitochondrial ribosomal protein of the small subunit	Verified	chr7:922180-922512	922180-922512	98.3%	412.21	406.11	406.11	357.25	500.76	332.82	409.16	381.68	416.79	1.51	1.55	1.73	0.13	-0.58	Matched[2413]
YGR216C	GPI1	"Membrane protein involved in the synthesis of N-acetylglucosaminyl phosphatidylinositol (GlcNAc-PI), the first intermediate in the synthesis of glycosylphosphatidylinositol (GPI) anchors; human and mouse GPI1p are functional homologs"	Verified	chr7:922638-924467	922638-924467	99.0%	108.14	116.41	89.93	86.07	72.83	44.69	112.28	88.00	58.76	0.41	0.36	0.24	-0.58	-0.33	Matched[2414]
YGR217W	CCH1	"Voltage-gated high-affinity calcium channel involved in calcium influx in response to some environmental stresses as well as exposure to mating pheromones; interacts and co-localizes with Mid1p, suggesting Cch1p and Mid1p function together"	Verified	chr7:924699-930818	924699-930818	98.9%	39.82	35.69	31.23	25.12	15.37	20.16	37.76	28.17	17.76	0.14	0.11	0.07	-0.67	-0.38	Frag<80[2415,2416]
YGR218W	CRM1	"Major karyopherin, involved in export of proteins, RNAs, and ribosomal subunits from the nucleus"	Verified	chr7:932544-935798	932544-935798	99.0%	338.83	313.08	334.18	327.35	306.56	314.94	325.96	330.76	310.75	1.20	1.34	1.29	-0.09	0.32	Covered/w/another[2418]
YGR219W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF MRPL9/YGR220C"	Dubious	chr7:936038-936379	936038-936379	99.5%	367.20	343.70	323.13	337.82	434.76	317.26	355.45	330.48	376.01	1.31	1.34	1.56	0.19	0.03	Covered/w/another[2418]
YGR220C	MRPL9	Mitochondrial ribosomal protein of the large subunit	Verified	chr7:936077-936886	936077-936886	99.2%	304.79	271.20	338.38	322.21	370.72	294.84	288.00	330.29	332.78	1.06	1.34	1.38	0.01	0.21	Covered/w/another[2418]
YGR221C	TOS2	Protein involved in localization of Cdc24p to the site of bud growth; may act as a membrane anchor; localizes to the bud neck and bud tip; potentially phosphorylated by Cdc28p	Verified	chr7:937127-938995	937127-938995	98.8%	122.43	101.84	105.09	75.30	48.21	21.13	112.13	90.20	34.67	0.41	0.37	0.14	-1.38	-2.32	Matched[2419]
YGR222W	PET54	"Mitochondrial translational activator specific for the COX3 mRNA, acts together with Pet122p and Pet494p; also required for splicing of the COX1 intron AI5 beta; located in the mitochondrial inner membrane"	Verified	chr7:939926-940807	939926-940807	98.9%	358.93	386.45	300.44	266.04	329.11	121.55	372.69	283.24	225.33	1.38	1.15	0.93	-0.33	-0.27	Matched[2420]
YGR223C	HSV2	"Phosphatidylinositol 3,5-bisphosphate-binding protein, predicted to fold as a seven-bladed beta-propeller; displays punctate cytoplasmic localization"	Verified	chr7:940872-942218	940872-942218	99.1%	106.35	144.54	135.56	132.56	218.69	164.01	125.44	134.06	191.35	0.46	0.54	0.79	0.51	0.35	Matched[2421]
YGR224W	AZR1	"Plasma membrane transporter of the major facilitator superfamily, involved in resistance to azole drugs such as ketoconazole and fluconazole"	Verified	chr7:942809-944650	942809-944650	98.9%	62.05	84.56	54.91	47.77	54.36	47.22	73.30	51.34	50.79	0.27	0.21	0.21	-0.02	-0.17	Covered/w/another[2422]
YGR225W	AMA1	Activator of meiotic anaphase promoting complex (APC/C); Cdc20p family member; required for initiation of spore wall assembly; required for Clb1p degradation during meiosis	Verified	chr7:945148-947022	945148-946330,946424-947022	98.8%	16.47	23.28	12.49	12.49	88.60	61.34	19.88	12.49	74.97	0.07	0.05	0.31	2.58	2.71	Covered/w/another[2422]
YGR226C		"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; overlaps significantly with a verified ORF, AMA1/YGR225W"	Dubious	chr7:946795-947004	946795-947004	98.6%	24.15	67.63	24.15	24.15	164.25	86.96	45.89	24.15	125.60	0.17	0.10	0.52	2.38	0.69	Covered/w/another[2422]
YGR227W	DIE2	"Dolichyl-phosphoglucose-dependent alpha-1,2 glucosyltransferase of the ER, functions in the pathway that synthesizes the dolichol-linked oligosaccharide precursor for N-linked protein glycosylation, has a role in regulation of ITR1 and INO1"	Verified	chr7:947423-949000	947423-949000	99.3%	188.96	157.68	184.49	135.34	109.80	106.61	173.32	159.91	108.21	0.64	0.65	0.45	-0.56	-0.02	Matched[2423]
YGR228W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF SMI1/YGR229C"	Dubious	chr7:949368-949712	949368-949712	99.9%	972.31	943.28	937.48	809.77	644.33	487.60	957.79	873.62	565.97	3.54	3.55	2.35	-0.63	-0.19	Covered/w/another[2424]
YGR229C	SMI1	Protein involved in the regulation of cell wall synthesis; proposed to be involved in coordinating cell cycle progression with cell wall integrity	Verified	chr7:949385-950902	949385-950902	99.2%	651.90	582.86	610.74	586.84	404.28	308.69	617.38	598.79	356.48	2.28	2.43	1.48	-0.75	-0.67	Matched[2424]
YGR230W	BNS1	"Protein with some similarity to Spo12p; overexpression bypasses need for Spo12p, but not required for meiosis"	Verified	chr7:951897-952310	951897-952310	98.8%	92.91	58.68	122.25	100.24	286.06	136.92	75.79	111.25	211.49	0.28	0.45	0.88	0.93	0.11	Matched[2425]
YGR231C	PHB2	"Subunit of the prohibitin complex (Phb1p-Phb2p), a 1.2 MDa ring-shaped inner mitochondrial membrane chaperone that stabilizes newly synthesized proteins; determinant of replicative life span; involved in mitochondrial segregation"	Verified	chr7:952551-953483	952551-953483	99.1%	752.47	721.11	794.63	726.52	1131.94	904.91	736.79	760.57	1018.42	2.72	3.09	4.22	0.42	0.47	Frag>80[2426,2427]
YGR232W	NAS6	"Regulatory, non-ATPase subunit of the 26S proteasome; homolog of the human oncoprotein gankyrin, which interacts with the retinoblastoma tumor suppressor (Rb) and cyclin-dependent kinase 4/6"	Verified	chr7:953963-954649	953963-954649	98.6%	252.45	295.26	252.45	255.40	472.41	307.07	273.85	253.92	389.74	1.01	1.03	1.61	0.62	0.31	Matched[2428]
YGR233C	PHO81	"Cyclin-dependent kinase (CDK) inhibitor, regulates Pho80p-Pho85p and Pcl7p-Pho85p cyclin-CDK complexes in response to phosphate levels; inhibitory activity for Pho80p-Pho85p requires myo-D-inositol heptakisphosphate (IP7) generated by Vip1p"	Verified	chr7:954677-958213	954677-958213	98.5%	184.78	165.27	173.59	171.87	81.77	73.45	175.02	172.73	77.61	0.65	0.70	0.32	-1.15	-0.47	Matched[2429]
YGR234W	YHB1	"Nitric oxide oxidoreductase, flavohemoglobin involved in nitric oxide detoxification; plays a role in the oxidative and nitrosative stress responses"	Verified	chr7:959908-961107	959908-961107	98.9%	1807.12	985.32	1524.76	1426.14	306.81	191.33	1396.22	1475.45	249.07	5.15	5.99	1.03	-2.57	-1.77	Matched[2430]
YGR235C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr7:961364-962065	961364-962065	99.0%	281.91	299.17	330.82	314.99	523.55	316.43	290.54	322.91	419.99	1.07	1.31	1.74	0.38	-0.63	Matched[2431]
YGR236C	SPG1	"Protein required for survival at high temperature during stationary phase; not required for growth on nonfermentable carbon sources; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr7:962534-962821	962534-962821	99.5%	0.00	17.45	6.98	3.49	97.75	41.89	8.73	5.24	69.82	0.03	0.02	0.29	3.74	2.16	Matched[2432]
YGR237C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr7:963303-965660	963303-965660	99.1%	110.82	144.19	124.08	124.08	230.20	216.08	127.51	124.08	223.14	0.47	0.50	0.92	0.85	1.31	Matched[2433]
YGR238C	KEL2	"Protein that functions in a complex with Kel1p to negatively regulate mitotic exit, interacts with Tem1p and Lte1p; localizes to regions of polarized growth; potential Cdc28p substrate"	Verified	chr7:966044-968692	966044-968692	99.1%	75.06	93.34	91.06	78.10	130.30	113.16	84.20	84.58	121.73	0.31	0.34	0.50	0.53	1.02	Matched[2434]
YGR239C	PEX21	Peroxin required for targeting of peroxisomal matrix proteins containing PTS2; interacts with Pex7p; partially redundant with Pex18p	Verified	chr7:969192-970058	969192-970058	98.6%	79.52	105.25	60.81	46.78	84.20	37.42	92.39	53.80	60.81	0.34	0.22	0.25	0.18	-0.55	Frag>80[2435,2436]
YGR240C	PFK1	"Alpha subunit of heterooctameric phosphofructokinase involved in glycolysis, indispensable for anaerobic growth, activated by fructose-2,6-bisphosphate and AMP, mutation inhibits glucose induction of cell cycle-related genes"	Verified	chr7:970776-973739	970776-973739	98.8%	1559.91	1358.77	1412.05	1356.73	580.53	761.51	1459.34	1384.39	671.02	5.39	5.62	2.78	-1.04	-0.55	Frag>80[2437,2438,2439]
YGR240C-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr7:974582-974782	974582-974782	98.8%	75.55	161.18	120.88	65.48	80.59	75.55	118.36	93.18	78.07	0.44	0.38	0.32	-0.26	NaN	Matched[2440]
YGR242W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF YAP1802/YGR241C"	Dubious	chr7:976420-976728	976420-976728	98.8%	91.72	94.99	140.85	121.20	114.64	153.95	93.35	131.02	134.30	0.34	0.53	0.56	0.04	0.49	Covered/w/another[2441]
YGR241C	YAP1802	"Protein involved in clathrin cage assembly; binds Pan1p and clathrin; homologous to Yap1801p, member of the AP180 protein family"	Verified	chr7:974880-976586	974880-976586	98.9%	181.28	189.58	201.43	190.76	252.38	229.86	185.43	196.09	241.12	0.68	0.80	1.00	0.30	0.86	Matched[2441]
YGR243W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr7:977341-977781	977341-977781	98.7%	55.15	103.41	133.28	135.58	519.34	312.52	79.28	134.43	415.93	0.29	0.55	1.72	1.63	1.28	Matched[2442]
YGR244C	LSC2	"Beta subunit of succinyl-CoA ligase, which is a mitochondrial enzyme of the TCA cycle that catalyzes the nucleotide-dependent conversion of succinyl-CoA to succinate"	Verified	chr7:978041-979324	978041-979324	99.2%	915.05	1126.94	1018.64	1192.86	1387.48	1250.93	1020.99	1105.75	1319.21	3.77	4.49	5.47	0.25	0.43	Matched[2443]
YGR245C	SDA1	"Highly conserved nuclear protein required for actin cytoskeleton organization and passage through Start, plays a critical role in G1 events, binds Nap1p, also involved in 60S ribosome biogenesis"	Verified	chr7:979770-982073	979770-982073	99.3%	287.73	100.58	170.54	129.00	19.68	7.00	194.15	149.77	13.34	0.72	0.61	0.06	-3.49	-0.66	Matched[2444]
YGR246C	BRF1	"TFIIIB B-related factor, one of three subunits of RNA polymerase III transcription initiation factor TFIIIB, binds TFIIIC and TBP and recruits RNA pol III to promoters, amino-terminal half is homologous to TFIIB"	Verified	chr7:982487-984277	982487-984277	99.2%	133.38	144.64	121.56	103.55	117.62	79.35	139.01	112.56	98.49	0.51	0.46	0.41	-0.19	0.07	Matched[2445]
YGR247W	CPD1	"Cyclic nucleotide phosphodiesterase, hydrolyzes ADP-ribose 1'', 2''-cyclic phosphate to ADP-ribose 1''-phosphate; may have a role in tRNA splicing; no detectable phenotype is conferred by null mutation or by overexpression"	Verified	chr7:984971-985690	984971-985690	98.4%	111.48	107.25	129.83	80.44	166.52	115.72	109.37	105.13	141.12	0.40	0.43	0.58	0.42	0.46	Matched[2446]
YGR248W	SOL4	6-phosphogluconolactonase with similarity to Sol3p	Verified	chr7:985977-986744	985977-986744	98.5%	35.68	169.14	113.64	154.61	5104.72	4314.50	102.41	134.13	4709.61	0.38	0.54	19.51	5.13	3.98	Matched[2447]
YGR249W	MGA1	Protein similar to heat shock transcription factor; multicopy suppressor of pseudohyphal growth defects of ammonium permease mutants	Verified	chr7:988054-989424	988054-989424	99.0%	7.37	12.52	7.37	6.63	58.93	64.09	9.95	7.00	61.51	0.04	0.03	0.25	3.14	3.02	Covered[2448]
YGR250C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr7:991181-993526	991181-993526	99.2%	110.89	143.12	132.38	109.60	1465.59	1509.00	127.00	120.99	1487.29	0.47	0.49	6.16	3.62	3.30	Matched[2450]
YGR251W		Putative protein of unknown function; deletion mutant has defects in pre-rRNA processing; green fluorescent protein (GFP)-fusion protein localizes to both the nucleus and the nucleolus; YGR251W is an essential gene	Uncharacterized	chr7:995644-996234	995644-996234	98.1%	136.26	124.18	103.49	43.12	27.60	13.80	130.22	73.30	20.70	0.48	0.30	0.09	-1.82	-1.98	Matched[2451]
YGR252W	GCN5	"Histone acetyltransferase, acetylates N-terminal lysines on histones H2B and H3; catalytic subunit of the ADA and SAGA histone acetyltransferase complexes; founding member of the Gcn5p-related N-acetyltransferase superfamily"	Verified	chr7:996874-998193	996874-998193	98.5%	152.98	158.36	136.84	140.68	141.45	96.86	155.67	138.76	119.15	0.57	0.56	0.49	-0.22	0.01	Matched[2452]
YGR253C	PUP2	Alpha subunit of the 20S proteasome involved in ubiquitin-dependent catabolism; human homolog is subunit zeta	Verified	chr7:998363-999145	998363-999145	99.2%	1021.25	927.24	1000.64	950.42	2029.62	1415.33	974.24	975.53	1722.47	3.60	3.96	7.14	0.82	0.40	Frag>80[2453,2454]
YGR254W	ENO1	"Enolase I, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression is repressed in response to glucose"	Verified	chr7:1000932-1002245	1000932-1002245	41.3%	8599.22	15441.34	9065.68	9607.74	9213.18	8051.62	12020.28	9336.71	8632.40	44.37	37.90	35.77	-0.11	-0.34	Matched[2456]
YGR255C	COQ6	"Putative flavin-dependent monooxygenase, involved in ubiquinone (Coenzyme Q) biosynthesis; localizes to the matrix face of the mitochondrial inner membrane in a large complex with other ubiquinone biosynthetic enzymes"	Verified	chr7:1002528-1003967	1002528-1003967	98.9%	279.37	424.67	331.32	315.87	735.63	671.05	352.02	323.59	703.34	1.30	1.31	2.91	1.12	1.36	Matched[2457]
YGR256W	GND2	"6-phosphogluconate dehydrogenase (decarboxylating), catalyzes an NADPH regenerating reaction in the pentose phosphate pathway; required for growth on D-glucono-delta-lactone"	Verified	chr7:1004630-1006108	1004630-1006108	98.3%	13.07	27.53	17.89	14.45	753.53	754.90	20.30	16.17	754.21	0.07	0.07	3.12	5.54	3.40	Matched[2458]
YGR257C	MTM1	"Mitochondrial protein of the mitochondrial carrier family, involved in activating mitochondrial Sod2p probably by facilitating insertion of an essential manganese cofactor"	Verified	chr7:1006211-1007311	1006211-1007311	99.1%	231.06	217.31	229.23	198.05	207.22	116.45	224.18	213.64	161.83	0.83	0.87	0.67	-0.40	0.18	Matched[2459]
YGR258C	RAD2	"Single-stranded DNA endonuclease, cleaves single-stranded DNA during nucleotide excision repair to excise damaged DNA; subunit of Nucleotide Excision Repair Factor 3 (NEF3); homolog of human XPG protein"	Verified	chr7:1007677-1010772	1007677-1010772	99.3%	81.01	87.51	78.73	89.14	120.37	118.42	84.26	83.93	119.39	0.31	0.34	0.49	0.51	1.01	Matched[2460]
YGR260W	TNA1	"High affinity nicotinic acid plasma membrane permease, responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA)"	Verified	chr7:1012491-1014095	1012491-1014095	98.8%	481.77	498.16	515.82	495.01	417.45	402.94	489.96	505.41	410.19	1.81	2.05	1.70	-0.30	0.11	Matched[2462]
YGR259C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps almost completely with the verified ORF TNA1/YGR260W"	Dubious	chr7:1012487-1012927	1012487-1012927	98.6%	303.65	317.45	365.76	292.15	223.14	243.84	310.55	328.96	233.49	1.15	1.34	0.97	-0.49	-0.04	Covered/w/another[2462]
YGR261C	APL6	Beta3-like subunit of the yeast AP-3 complex; functions in transport of alkaline phosphatase to the vacuole via the alternate pathway; exists in both cytosolic and peripherally associated membrane-bound pools	Verified	chr7:1014327-1016756	1014327-1016756	99.2%	250.67	233.24	183.43	215.80	163.51	163.93	241.95	199.62	163.72	0.89	0.81	0.68	-0.29	0.07	Matched[2463]
YGR262C	BUD32	"Protein kinase proposed to be involved in bud-site selection, telomere uncapping and elongation, and transcription; component of the EKC/KEOPS protein complex with Kae1p, Cgi121p, Pcc1p, and Gon7p"	Verified	chr7:1016980-1017765	1016980-1017765	99.1%	284.98	220.80	254.17	186.14	116.82	51.35	252.89	220.15	84.08	0.93	0.89	0.35	-1.39	-1.11	Matched[2464]
YGR263C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum	Uncharacterized	chr7:1017973-1019247	1017973-1019247	99.0%	91.86	75.23	79.19	83.15	95.82	53.06	83.55	81.17	74.44	0.31	0.33	0.31	-0.12	0.21	Matched[2465]
YGR265W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF MES1/YGR264C, which encodes methionyl-tRNA synthetase"	Dubious	chr7:1021654-1022064	1021654-1022064	99.0%	235.97	201.56	201.56	189.27	41.79	44.24	218.76	195.41	43.02	0.81	0.79	0.18	-2.18	-0.51	Covered/w/another[2466]
YGR264C	MES1	"Methionyl-tRNA synthetase, forms a complex with glutamyl-tRNA synthetase (Gus1p) and Arc1p, which increases the catalytic efficiency of both tRNA synthetases; also has a role in nuclear export of tRNAs"	Verified	chr7:1019604-1021859	1019604-1021859	99.1%	685.96	500.38	583.11	499.93	150.25	98.38	593.17	541.52	124.31	2.19	2.20	0.52	-2.12	-1.58	Matched[2466]
YGR266W		"Protein of unknown function, predicted to contain a single transmembrane domain; localized to both the mitochondrial outer membrane and the plasma membrane"	Verified	chr7:1022662-1024767	1022662-1024767	98.7%	128.92	102.94	150.08	144.79	236.19	197.23	115.93	147.44	216.71	0.43	0.60	0.90	0.56	0.84	Matched[2467]
YGR267C	FOL2	"GTP-cyclohydrolase I, catalyzes the first step in the folic acid biosynthetic pathway"	Verified	chr7:1025010-1025741	1025010-1025741	99.2%	834.28	861.81	693.86	614.01	894.85	523.15	848.05	653.93	709.00	3.13	2.65	2.94	0.12	-0.32	Matched[2468]
YGR269W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF HUA1/YGR268C"	Dubious	chr7:1026642-1026968	1026642-1026968	98.4%	24.85	40.38	46.60	27.96	86.98	80.77	32.62	37.28	83.87	0.12	0.15	0.35	1.17	0.47	Covered/w/another[2470]
YGR268C	HUA1	Cytoplasmic protein containing a zinc finger domain with sequence similarity to that of Type I J-proteins; computational analysis of large-scale protein-protein interaction data suggests a possible role in actin patch assembly	Verified	chr7:1026063-1026659	1026063-1026659	98.4%	122.52	166.76	144.64	142.94	433.92	376.06	144.64	143.79	404.99	0.53	0.58	1.68	1.49	1.33	Matched[2469]
YGR270W	YTA7	"Protein of unknown function, member of CDC48/PAS1/SEC18 family of ATPases, potentially phosphorylated by Cdc28p"	Verified	chr7:1027376-1031515	1027376-1031515	98.5%	162.82	186.60	153.50	144.43	186.36	212.35	174.71	148.96	199.35	0.64	0.60	0.83	0.42	0.90	Matched[2470]
YGR270C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified ORF YTA7/YGR270W"	Dubious	chr7:1027388-1027606	1027388-1027606	98.1%	46.57	88.47	116.41	74.51	46.57	149.01	67.52	95.46	97.79	0.25	0.39	0.41	0.03	NaN	Covered/w/another[2470]
YGR271W	SLH1	"Putative RNA helicase related to Ski2p, involved in translation inhibition of non-poly(A) mRNAs; required for repressing propagation of dsRNA viruses"	Verified	chr7:1031797-1037700	1031797-1037700	98.8%	56.89	61.52	48.15	43.01	30.67	49.01	59.21	45.58	39.84	0.22	0.19	0.17	-0.19	-0.03	
YGR271C-A		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus	Uncharacterized	chr7:1037806-1037997	1037806-1037997	99.5%	340.39	178.05	225.18	178.05	26.18	10.47	259.22	201.61	18.33	0.96	0.82	0.08	-3.46	-2.58	Covered/w/another[2471]
YGR272C		Putative protein of unknown function; deletion mutant has defects in pre-rRNA processing; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus	Uncharacterized	chr7:1038048-1038506	1038048-1038506	99.6%	183.81	126.91	126.91	133.48	39.39	8.75	155.36	130.20	24.07	0.57	0.53	0.10	-2.44	-2.90	Covered/w/another[2471]
YGR273C		Putative protein of unknown function; deletion mutant has no readily detectable phenotype	Uncharacterized	chr7:1038720-1039244	1038720-1039244	99.1%	0.00	5.77	0.00	1.92	0.00	1.92	2.88	0.96	0.96	0.01	0.00	0.00	0.00	0.09	Overlap[2471]
YGR274C	TAF1	"TFIID subunit (145 kDa), involved in RNA polymerase II transcription initiation, has histone acetyltransferase activity, involved in promoter binding and G1/S progression"	Verified	chr7:1039901-1043101	1039901-1043101	99.4%	104.39	102.19	86.47	81.75	69.49	61.32	103.29	84.11	65.40	0.38	0.34	0.27	-0.36	0.43	Matched[2472]
YGR275W	RTT102	"Component of both the SWI/SNF and RSC chromatin remodeling complexes, suggested role in chromosome maintenance; possible weak regulator of Ty1 transposition"	Verified	chr7:1043282-1043755	1043282-1043755	98.1%	382.80	346.24	277.42	275.27	339.78	217.20	364.52	276.34	278.49	1.35	1.12	1.15	0.01	-0.37	Covered/w/another[2473]
YGR276C	RNH70	"3' exoribonuclease, required for 5S rRNA and tRNA-Arg3 maturation"	Verified	chr7:1043825-1045486	1043825-1045486	99.3%	169.64	129.05	146.01	148.43	134.50	96.94	149.34	147.22	115.72	0.55	0.60	0.48	-0.35	-0.22	Covered/w/another[2473]
YGR277C		"Putative pantetheine-phosphate adenylyltransferase (PPAT) that catalyzes the fourth step in the biosynthesis of coenzyme A from pantothenate; conserved in bacteria, humans, and plants; essential for viability"	Uncharacterized	chr7:1045650-1046567	1045650-1046567	99.1%	168.12	162.62	174.71	128.56	290.08	184.60	165.37	151.63	237.34	0.61	0.62	0.98	0.65	0.70	Covered/w/another[2473]
YGR278W	CWC22	"Essential protein, component of a complex containing Cef1p, has similarity to S. pombe Cwf22p; putative spliceosomal component, based on computational analysis of large-scale protein-protein interaction data"	Verified	chr7:1046737-1048470	1046737-1048470	98.6%	71.91	85.95	71.33	71.33	74.84	68.99	78.93	71.33	71.91	0.29	0.29	0.30	0.01	0.39	Matched[2474]
YGR279C	SCW4	Cell wall protein with similarity to glucanases; scw4 scw10 double mutants exhibit defects in mating	Verified	chr7:1048804-1049964	1048804-1049964	97.6%	4785.18	6111.16	4876.05	4936.04	3451.26	4188.80	5448.17	4906.04	3820.03	20.11	19.91	15.83	-0.36	-1.10	Frag>80[2475,2476,2477,2478]
YGR280C	PXR1	"Essential protein involved in rRNA and snoRNA maturation; competes with TLC1 RNA for binding to Est2p, suggesting a role in regulation of telomerase; human homolog inhibits telomerase; contains a G-patch RNA interacting domain"	Verified	chr7:1050916-1051731	1050916-1051731	99.4%	526.59	314.48	302.14	265.15	176.35	110.99	420.53	283.64	143.67	1.55	1.15	0.60	-0.98	-0.89	Matched[2480]
YGR281W	YOR1	"Plasma membrane ATP-binding cassette (ABC) transporter, multidrug transporter mediates export of many different organic anions including oligomycin"	Verified	chr7:1052830-1057263	1052830-1057263	98.8%	132.67	135.41	123.54	115.78	193.42	264.66	134.04	119.66	229.04	0.49	0.49	0.95	0.94	1.38	Covered[2481]
YGR282C	BGL2	"Endo-beta-1,3-glucanase, major protein of the cell wall, involved in cell wall maintenance"	Verified	chr7:1057789-1058730	1057789-1058730	98.6%	4220.92	4883.13	4268.29	4147.70	3791.29	3180.76	4552.02	4208.00	3486.02	16.80	17.08	14.44	-0.27	-0.58	Frag>80[2482,2483,2484]
YGR283C		"Protein of unknown function; may interact with ribosomes, based on co-purification experiments; deletion mutant is resistant to fluconazole; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus"	Verified	chr7:1059021-1060046	1059021-1060046	99.1%	146.60	114.13	108.23	81.66	75.76	61.99	130.37	94.95	68.87	0.48	0.39	0.29	-0.46	-2.95	Frag>80[2484,2485,2486,2487]
YGR284C	ERV29	"Protein localized to COPII-coated vesicles, involved in vesicle formation and incorporation of specific secretory cargo"	Verified	chr7:1060664-1061596	1060664-1061596	99.0%	580.09	505.41	585.50	560.61	1233.77	844.16	542.75	573.05	1038.96	2.00	2.33	4.30	0.86	0.84	Frag>80[2487,2488,2489]
YGR285C	ZUO1	"Cytosolic ribosome-associated chaperone that acts, together with Ssz1p and the Ssb proteins, as a chaperone for nascent polypeptide chains; contains a DnaJ domain and functions as a J-protein partner for Ssb1p and Ssb2p"	Verified	chr7:1061858-1063159	1061858-1063159	99.0%	1870.09	1288.11	1700.15	1621.00	499.73	672.77	1579.10	1660.58	586.25	5.83	6.74	2.43	-1.50	-0.71	Matched[2490]
YGR286C	BIO2	"Biotin synthase, catalyzes the conversion of dethiobiotin to biotin, which is the last step of the biotin biosynthesis pathway; complements E. coli bioB mutant"	Verified	chr7:1063819-1064946	1063819-1064946	99.2%	91.18	159.11	109.05	123.36	31.29	28.60	125.14	116.21	29.95	0.46	0.47	0.12	-1.96	-1.20	Matched[2491]
YGR287C		"Protein of unknown function that may interact with ribosomes, based on co-purification experiments; has similarity to alpha-D-glucosidase (maltase); authentic, non-tagged protein detected in purified mitochondria in high-throughput studies"	Verified	chr7:1067228-1068997	1067228-1068997	71.8%	16.53	18.89	22.83	17.32	61.41	41.72	17.71	20.07	51.56	0.07	0.08	0.21	1.36	1.52	Frag<80[2492]
YGR288W	MAL13	"MAL-activator protein, part of complex locus MAL1; nonfunctional in genomic reference strain S288C"	Verified	chr7:1070299-1071720	1070299-1071720	98.7%	43.47	52.73	29.93	33.49	96.20	74.11	48.10	31.71	85.15	0.18	0.13	0.35	1.43	1.71	Matched[2493]
YGR290W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; putative HLH protein; partially overlaps the verified ORF MAL11/YGR289C (a high-affinity maltose transporter)"	Dubious	chr7:1075488-1075931	1075488-1075931	99.4%	11.33	36.25	29.45	36.25	47.57	40.78	23.79	32.85	44.18	0.09	0.13	0.18	0.43	NaN	Covered/w/another[2494]
YGR289C	MAL11	"Maltose permease, inducible high-affinity maltose transporter (alpha-glucoside transporter); encoded in the MAL1 complex locus; member of the 12 transmembrane domain superfamily of sugar transporters"	Verified	chr7:1073969-1075819	1073969-1075819	99.0%	42.01	67.11	47.47	53.47	94.40	75.84	54.56	50.47	85.12	0.20	0.20	0.35	0.75	0.99	Matched[2494]
YGR291C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr7:1076289-1076510	1076289-1076510	10.0%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.81	
YGR292W	MAL12	"Maltase (alpha-D-glucosidase), inducible protein involved in maltose catabolism; encoded in the MAL1 complex locus"	Verified	chr7:1076605-1078359	1076605-1078359	3.5%	0.00	0.00	16.48	0.00	0.00	16.48	0.00	8.24	8.24	0.00	0.03	0.03	0.00	-0.47	
YGR294W		Hypothetical protein	Uncharacterized	chr7:1080312-1080674	1080312-1080674	1.1%	247.42	0.00	0.00	0.00	0.00	0.00	123.71	0.00	0.00	0.46	0.00	0.00	NaN	0.96	
YGR293C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YGR294W"	Dubious	chr7:1079891-1080352	1079891-1080352	6.6%	32.56	0.00	32.56	0.00	0.00	32.56	16.28	16.28	16.28	0.06	0.07	0.07	0.00	-0.73	
YGR295C	COS6	"Protein of unknown function, member of the DUP380 subfamily of conserved, often subtelomerically-encoded proteins"	Verified	chr7:1081590-1082735	1081590-1082735	21.3%	461.85	564.03	543.60	429.16	727.52	371.93	512.94	486.38	549.73	1.89	1.97	2.28	0.18	0.33	Frag<80[2495,2496]
YGR296W	YRF1-3	"Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p"	Verified	chr7:1084870-1090597	1084870-1084888,1085037-1090597	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.20	
YGR296C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps TEL07R"	Dubious	chr7:1088876-1089451	1088876-1089451	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YGR296C-B		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; contained completely within TEL07R"	Dubious	chr7:1089752-1090234	1089752-1090234	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YHL050W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr8:811-1293	811-1293	1.0%	0.00	198.35	0.00	0.00	0.00	0.00	99.17	0.00	0.00	0.37	0.00	0.00	NaN	NaN	
YHL050C		"Putative protein of unknown function, potential Cdc28p substrate"	Uncharacterized	chr8:445-3310	445-1897,2670-3310	1.2%	0.00	80.00	0.00	0.00	40.00	0.00	40.00	0.00	20.00	0.15	0.00	0.08	Inf	0.32	
YHL049C		Putative protein of unknown function	Uncharacterized	chr8:3725-4540	3725-4540	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.14	
YHL048C-A		Putative protein of unknown function; identified by expression profiling and mass spectrometry	Uncharacterized	chr8:5662-5796	5662-5796	45.8%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	NaN	
YHL048W	COS8	"Nuclear membrane protein, member of the DUP380 subfamily of conserved, often subtelomerically-encoded proteins; regulation suggests a potential role in the unfolded protein response"	Verified	chr8:6400-7545	6400-7545	43.9%	182.71	291.93	236.33	222.42	351.51	248.24	237.32	229.38	299.88	0.88	0.93	1.24	0.39	0.79	Frag>80[2498,2499,2500]
YHL046W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:9979-10305	9979-10305	99.0%	98.80	55.58	49.40	43.23	21.61	21.61	77.19	46.31	21.61	0.28	0.19	0.09	-1.10	NaN	Covered/w/another[2501]
YHL047C	ARN2	"Transporter, member of the ARN family of transporters that specifically recognize siderophore-iron chelates; responsible for uptake of iron bound to the siderophore triacetylfusarinine C"	Verified	chr8:8298-10211	8298-10211	98.8%	126.87	111.01	90.40	60.79	53.92	40.70	118.94	75.59	47.31	0.44	0.31	0.20	-0.68	-0.05	Covered/w/another[2501]
YHL046C		Putative protein of unknown function; not an essential gene	Uncharacterized	chr8:11921-12283	11921-12283	6.4%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.70	
YHL045W		Putative protein of unknown function; not an essential gene	Dubious	chr8:12500-12847	12500-12847	63.3%	4.54	18.16	18.16	9.08	18.16	13.62	11.35	13.62	15.89	0.04	0.06	0.07	0.22	0.11	
YHL044W		"Putative integral membrane protein, member of DUP240 gene family; green fluorescent protein (GFP)-fusion protein localizes to the plasma membrane in a punctate pattern"	Uncharacterized	chr8:13563-14270	13563-14270	99.0%	89.89	117.00	97.03	119.86	255.41	164.09	103.45	108.44	209.75	0.38	0.44	0.87	0.95	1.36	Matched[2502]
YHL043W	ECM34	"Putative protein of unknown function, member of the DUP380 subfamily of conserved, often subtelomerically-encoded proteins"	Verified	chr8:14899-15411	14899-15411	98.9%	35.48	55.19	47.31	31.54	112.35	80.81	45.34	39.42	96.58	0.17	0.16	0.40	1.29	-0.01	Covered/w/another[2503]
YHL042W		"Putative protein of unknown function; member of the DUP380 subfamily of conserved, often subtelomerically-encoded proteins"	Uncharacterized	chr8:15665-16117	15665-16117	99.1%	31.20	13.37	24.51	4.46	84.69	80.23	22.29	14.49	82.46	0.08	0.06	0.34	2.51	1.84	Covered/w/another[2503]
YHL041W		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data"	Dubious	chr8:17390-17839	17390-17839	99.1%	2.24	2.24	0.00	0.00	0.00	13.46	2.24	0.00	6.73	0.01	0.00	0.03	Inf	0.15	
YHL040C	ARN1	"Transporter, member of the ARN family of transporters that specifically recognize siderophore-iron chelates; responsible for uptake of iron bound to ferrirubin, ferrirhodin, and related siderophores"	Verified	chr8:19085-20968	19085-20968	98.7%	101.59	73.64	78.48	33.33	36.02	23.65	87.62	55.90	29.83	0.32	0.23	0.12	-0.91	-0.36	Matched[2504]
YHL039W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr8:21780-23537	21780-23537	99.1%	210.13	138.36	140.09	137.79	28.13	23.54	174.25	138.94	25.84	0.64	0.56	0.11	-2.43	-1.82	Matched[2505]
YHL038C	CBP2	"Mitochondrial protein required for splicing of the group I intron aI5 of the COB pre-mRNA, binds to the RNA to promote splicing; also involved in but not essential for splicing of the COB bI2 intron and the intron in the 21S rRNA gene"	Verified	chr8:23614-25506	23614-25506	99.1%	67.73	81.06	63.46	59.73	49.60	42.66	74.40	61.60	46.13	0.27	0.25	0.19	-0.42	-0.07	Matched[2506]
YHL037C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:25698-26177	25698-26177	98.8%	6.33	0.00	4.22	2.11	27.41	8.43	3.16	3.16	17.92	0.01	0.01	0.07	2.50	0.88	Covered/w/another[2507]
YHL036W	MUP3	"Low affinity methionine permease, similar to Mup1p"	Verified	chr8:26239-27879	26239-27879	99.0%	49.26	61.58	80.67	48.65	74.51	44.95	55.42	64.66	59.73	0.20	0.26	0.25	-0.11	0.24	Frag>80[2507]
YHL035C	VMR1	"Protein of unknown function that may interact with ribosomes, based on co-purification experiments; member of the ATP-binding cassette (ABC) family; potential Cdc28p substrate; detected in purified mitochondria in high-throughput studies"	Verified	chr8:27976-32754	27976-32754	99.1%	76.62	62.69	77.26	49.18	105.33	112.93	69.66	63.22	109.13	0.26	0.26	0.45	0.79	1.21	Matched[2508]
YHL034W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:33174-33635	33174-33635	99.3%	2739.31	2710.98	2702.26	2632.53	2809.04	2144.37	2725.14	2667.39	2476.71	10.06	10.83	10.26	-0.11	NaN	Matched[2509]
YHL034C	SBP1	Nucleolar single-strand nucleic acid binding protein; associates with small nuclear RNAs	Verified	chr8:33191-34075	33191-34075	99.3%	2402.05	2379.28	2343.99	2265.44	2263.16	1874.96	2390.67	2304.72	2069.06	8.83	9.36	8.57	-0.16	-0.44	Matched[2509]
YHL033C	RPL8A	"Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Bp and has similarity to rat L7a ribosomal protein; mutation results in decreased amounts of free 60S subunits"	Verified	chr8:35253-36023	35253-36023	46.3%	3650.29	2916.31	2938.72	2361.62	593.91	296.95	3283.30	2650.17	445.43	12.12	10.76	1.85	-2.57	-2.27	Matched[2511]
YHL032C	GUT1	"Glycerol kinase, converts glycerol to glycerol-3-phosphate; glucose repression of expression is mediated by Adr1p and Ino2p-Ino4p; derepression of expression on non-fermentable carbon sources is mediated by Opi1p and Rsf1p"	Verified	chr8:36377-38506	36377-38506	98.7%	126.53	179.81	150.79	141.75	180.76	152.22	153.17	146.27	166.49	0.57	0.59	0.69	0.19	0.33	Matched[2512]
YHL030W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene GOS1/YHL031C"	Dubious	chr8:39072-39533	39072-39533	98.7%	155.74	208.39	221.55	171.10	258.84	272.00	182.07	196.33	265.42	0.67	0.80	1.10	0.44	NaN	Matched[2513]
YHL031C	GOS1	"v-SNARE protein involved in Golgi transport, homolog of the mammalian protein GOS-28/GS28"	Verified	chr8:38813-39484	38813-39484	98.6%	165.96	232.35	212.74	182.56	297.23	262.53	199.16	197.65	279.88	0.74	0.80	1.16	0.50	0.61	Matched[2513]
YHL030W	ECM29	"Major component of the proteasome; tethers the proteasome core particle to the regulatory particle, and enhances the stability of the proteasome"	Verified	chr8:40082-45688	40082-45688	99.0%	74.06	56.76	65.05	61.80	102.53	119.10	65.41	63.43	110.81	0.24	0.26	0.46	0.81	0.95	Frag>80[2514,2515,2516]
YHL029C		"Cytoplasmic protein required for replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts"	Uncharacterized	chr8:45927-47966	45927-47966	98.7%	116.74	79.48	89.91	70.54	68.06	60.11	98.11	80.23	64.08	0.36	0.33	0.27	-0.32	0.05	Matched[2517]
YHL028W	WSC4	ER membrane protein involved in the translocation of soluble secretory proteins and insertion of membrane proteins into the ER membrane; may also have a role in the stress response but has only partial functional overlap with WSC1-3	Verified	chr8:48761-50578	48761-50578	98.9%	274.14	380.35	226.32	247.45	137.91	130.12	327.25	236.89	134.01	1.21	0.96	0.56	-0.82	-0.22	Matched[2519]
YHL027W	RIM101	Transcriptional repressor involved in response to pH and in cell wall construction; required for alkaline pH-stimulated haploid invasive growth and sporulation; activated by proteolytic processing; similar to A. nidulans PacC	Verified	chr8:51109-52986	51109-52986	98.7%	154.35	206.70	145.71	119.27	202.38	194.28	180.52	132.49	198.33	0.67	0.54	0.82	0.58	0.91	Matched[2520]
YHL026C		Putative protein of unknown function; YHL026C is not an essential gene; in 2005 the start site was moved 141 nt upstream (see Locus History)	Uncharacterized	chr8:53217-54164	53217-54164	98.6%	58.85	90.95	47.08	47.08	26.75	14.98	74.90	47.08	20.86	0.28	0.19	0.09	-1.17	-0.12	Matched[2521]
YHL025W	SNF6	Subunit of the SWI/SNF chromatin remodeling complex involved in transcriptional regulation; functions interdependently in transcriptional activation with Snf2p and Snf5p	Verified	chr8:54849-55847	54849-55847	98.1%	260.28	293.97	238.85	231.70	287.84	149.02	277.12	235.27	218.43	1.02	0.96	0.91	-0.11	-0.12	Matched[2522]
YHL024W	RIM4	Putative RNA-binding protein required for the expression of early and middle sporulation genes	Verified	chr8:56647-58788	56647-58788	98.5%	53.53	60.64	50.69	44.06	315.98	207.97	57.08	47.37	261.97	0.21	0.19	1.09	2.47	2.31	Matched[2523]
YHL023C	RMD11	Protein required for sporulation	Verified	chr8:59121-62561	59121-62561	99.1%	102.59	102.00	87.93	81.19	92.92	105.52	102.30	84.56	99.22	0.38	0.34	0.41	0.23	0.52	Matched[2524]
YHL022C	SPO11	Meiosis-specific protein that initiates meiotic recombination by catalyzing the formation of double-strand breaks in DNA via a transesterification reaction; required for homologous chromosome pairing and synaptonemal complex formation	Verified	chr8:62959-64155	62959-64155	98.9%	10.13	23.64	11.82	7.60	16.04	27.86	16.89	9.71	21.95	0.06	0.04	0.09	1.18	-0.02	
YHL021C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr8:64459-65856	64459-65856	98.9%	196.76	467.30	509.25	721.92	3970.58	3457.71	332.03	615.59	3714.15	1.23	2.50	15.39	2.59	2.54	Frag>80[2525,2526,2527]
YHL020C	OPI1	Transcriptional regulator of a variety of genes; phosphorylation by protein kinase A stimulates Opi1p function in negative regulation of phospholipid biosynthetic genes; involved in telomere maintenance	Verified	chr8:66239-67453	66239-67453	98.0%	184.84	191.56	209.21	215.93	126.03	128.55	188.20	212.57	127.29	0.69	0.86	0.53	-0.74	-0.21	Frag>80[2527,2528]
YHL019W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene APM2/YHL019C"	Dubious	chr8:67708-68301	67708-68301	99.0%	90.14	132.65	137.76	93.54	290.82	187.07	111.39	115.65	238.95	0.41	0.47	0.99	1.05	NaN	Covered/w/another[2529]
YHL019C	APM2	"Protein of unknown function, homologous to the medium chain of mammalian clathrin-associated protein complex; involved in vesicular transport"	Verified	chr8:67728-69545	67728-69545	99.2%	83.74	103.15	94.83	76.53	175.79	146.96	93.44	85.68	161.38	0.34	0.35	0.67	0.91	1.25	Matched[2529]
YHL018W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to mitochondria and is induced in response to the DNA-damaging agent MMS	Uncharacterized	chr8:69705-70067	69705-70067	98.3%	19.61	33.61	33.61	33.61	36.41	25.21	26.61	33.61	30.81	0.10	0.14	0.13	-0.13	0.43	Covered/w/another[2530]
YHL017W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein co-localizes with clathrin-coated vesicles	Uncharacterized	chr8:70273-71871	70273-71871	99.0%	163.04	180.10	139.02	162.41	187.05	180.10	171.57	150.71	183.58	0.63	0.61	0.76	0.28	0.66	Matched[2530]
YHL016C	DUR3	"Plasma membrane transporter for both urea and polyamines, expression is highly sensitive to nitrogen catabolite repression and induced by allophanate, the last intermediate of the allantoin degradative pathway"	Verified	chr8:72034-74241	72034-74241	98.9%	43.05	61.83	30.68	24.73	27.94	21.98	52.44	27.71	24.96	0.19	0.11	0.10	-0.15	-0.46	Frag<80[2531]
YHL015W-A		Putative protein of unknown function	Uncharacterized	chr8:74696-74779	74696-74779	99.0%	0.00	0.00	0.00	12.02	84.17	12.02	0.00	6.01	48.10	0.00	0.02	0.20	3.00	NaN	Covered[2532]
YHL015W	RPS20	Protein component of the small (40S) ribosomal subunit; overproduction suppresses mutations affecting RNA polymerase III-dependent transcription; has similarity to E. coli S10 and rat S20 ribosomal proteins	Verified	chr8:75409-75774	75409-75774	98.7%	14628.68	12530.17	12992.50	11710.69	7051.33	6184.80	13579.42	12351.60	6618.06	50.13	50.14	27.42	-0.90	-2.92	Matched[2533]
YHL014C	YLF2	"Protein of unknown function, has weak similarity to E. coli GTP-binding protein gtp1; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr8:76094-77311	76094-77311	99.3%	109.94	109.94	77.70	80.18	33.89	33.89	109.94	78.94	33.89	0.41	0.32	0.14	-1.22	-0.79	Covered/w/another[2534]
YHL013C	OTU2	"Protein of unknown function that may interact with ribosomes, based on co-purification experiments; member of the ovarian tumor-like (OTU) superfamily of predicted cysteine proteases; shows cytoplasmic localization"	Verified	chr8:77427-78350	77427-78350	99.5%	138.17	81.60	115.33	95.74	73.98	38.08	109.89	105.54	56.03	0.41	0.43	0.23	-0.91	-0.00	Covered/w/another[2534]
YHL012W		"Putative protein of unknown function, has some homology to Ugp1p, which encodes UDP-glucose pyrophosphorylase"	Uncharacterized	chr8:78932-80413	78932-80413	99.0%	38.86	40.90	14.32	13.63	11.59	11.59	39.88	13.98	11.59	0.15	0.06	0.05	-0.27	0.06	Frag<80[2535]
YHL011C	PRS3	"5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of five related enzymes, which are active as heteromultimeric complexes"	Verified	chr8:80650-81612	80650-81612	99.1%	651.93	478.99	543.98	523.02	100.62	88.04	565.46	533.50	94.33	2.09	2.17	0.39	-2.50	-2.07	Matched[2536]
YHL010C		"Putative protein of unknown function, contains a zinc finger region and has homology to human BRAP2, which is a cytoplasmic protein that binds nuclear localization sequences"	Uncharacterized	chr8:81960-83717	81960-83717	99.3%	86.53	108.31	95.13	97.42	135.81	125.50	97.42	96.27	130.66	0.36	0.39	0.54	0.44	0.86	Covered/w/another[2537]
YHL009C	YAP3	Basic leucine zipper (bZIP) transcription factor	Verified	chr8:84064-85056	84064-85056	99.2%	119.79	135.02	126.90	129.94	130.96	97.46	127.41	128.42	114.21	0.47	0.52	0.47	-0.17	0.32	Covered/w/another[2537]
YHL008C		"Putative protein of unknown function, does not appear to be involved in monocarboxylic acid transport; green fluorescent protein (GFP)-fusion protein localizes to the vacuole"	Uncharacterized	chr8:92623-94506	92623-94506	99.0%	108.29	156.53	87.92	92.20	344.16	407.95	132.41	90.06	376.06	0.49	0.37	1.56	2.06	2.22	Matched[2539]
YHL006W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:97728-98081	97728-98081	98.8%	102.91	80.04	88.61	68.60	54.31	65.75	91.47	78.61	60.03	0.34	0.32	0.25	-0.39	NaN	Covered/w/another[2541]
YHL007C	STE20	"Signal transducing kinase of the PAK (p21-activated kinase) family, involved in pheromone response and pseudohyphal/invasive growth pathways, activated by Cdc42p; binds Ste4p at a GBB motif present in noncatalytic domains of PAK kinases"	Verified	chr8:95114-97933	95114-97933	98.9%	181.10	186.47	158.50	134.84	101.13	118.70	183.79	146.67	109.91	0.68	0.60	0.46	-0.42	0.36	Frag<80[2540]
YHL006C	SHU1	"Protein of unassigned function involved in mutation suppression, important for error-free repair of spontaneous and induced DNA lesions to protect the genome from mutation; associates with Shu2p, Psy3p, and Csm2p"	Verified	chr8:98339-98791	98339-98791	98.7%	55.90	62.60	46.95	62.60	127.45	69.31	59.25	54.78	98.38	0.22	0.22	0.41	0.84	0.24	Covered/w/another[2541]
YHL004W	MRP4	Mitochondrial ribosomal protein of the small subunit	Verified	chr8:99215-100399	99215-100399	98.7%	364.18	342.81	387.26	357.34	266.72	228.25	353.49	372.30	247.49	1.30	1.51	1.03	-0.59	0.47	Matched[2542]
YHL005C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF YHL004W"	Dubious	chr8:98824-99216	98824-99216	98.7%	25.78	38.67	46.40	54.14	41.25	30.93	32.22	50.27	36.09	0.12	0.20	0.15	-0.48	-0.14	Overlap[2541,2542]
YHL003C	LAG1	"Ceramide synthase component, involved in synthesis of ceramide from C26(acyl)-coenzyme A and dihydrosphingosine or phytosphingosine, functionally equivalent to Lac1p"	Verified	chr8:100644-101879	100644-101879	99.1%	665.33	666.96	635.12	609.82	555.94	364.91	666.15	622.47	460.42	2.46	2.53	1.91	-0.44	-0.56	Matched[2543]
YHL002W	HSE1	"Subunit of the endosomal Vps27p-Hse1p complex required for sorting of ubiquitinated membrane proteins into intralumenal vesicles prior to vacuolar degradation, as well as for recycling of Golgi proteins and formation of lumenal membranes"	Verified	chr8:102607-103965	102607-103965	98.6%	234.27	249.94	243.97	199.20	235.02	186.52	242.10	221.59	210.77	0.89	0.90	0.87	-0.07	0.05	Matched[2544]
YHL002C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:102582-103070	102582-103070	98.6%	211.65	174.30	197.13	161.85	190.90	157.70	192.98	179.49	174.30	0.71	0.73	0.72	-0.04	NaN	Covered/w/another[2544]
YHL001W	RPL14B	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl14Ap and has similarity to rat L14 ribosomal protein"	Verified	chr8:104272-105086	104272-104400,104799-105086	43.2%	2776.49	1821.38	2360.02	1554.84	960.67	533.09	2298.94	1957.43	746.88	8.49	7.95	3.09	-1.39	-1.95	Frag>80[2545,2546,2547]
YHR001W	OSH7	"Member of an oxysterol-binding protein family with seven members in S. cerevisiae; family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability"	Verified	chr8:106050-107363	106050-107363	98.5%	187.74	219.41	222.50	214.00	332.21	264.99	203.57	218.25	298.60	0.75	0.89	1.24	0.45	0.66	Matched[2548]
YHR001W-A	QCR10	"Subunit of the ubiqunol-cytochrome c oxidoreductase complex which includes Cobp, Rip1p, Cyt1p, Cor1p, Qcr2p, Qcr6p, Qcr7p, Qcr8p, Qcr9p, and Qcr10p and comprises part of the mitochondrial respiratory chain"	Verified	chr8:107821-108117	107821-107826,107890-108117	98.9%	453.56	539.96	609.07	647.95	1688.98	1239.74	496.76	628.51	1464.36	1.83	2.55	6.07	1.22	0.70	Matched[2550]
YHR002W	LEU5	"Mitochondrial carrier protein involved in the accumulation of CoA in the mitochondrial matrix; homolog of human Graves disease protein; does not encode an isozyme of Leu4p, as first hypothesized"	Verified	chr8:108807-109880	108807-109880	98.9%	58.35	64.00	69.64	67.76	123.29	83.76	61.17	68.70	103.53	0.23	0.28	0.43	0.59	0.33	Covered/w/another[2551]
YHR003C		"Protein of unknown function, localized to the mitochondrial outer membrane"	Verified	chr8:110023-111312	110023-111312	99.1%	171.26	160.31	145.45	132.94	112.61	81.33	165.79	139.20	96.97	0.61	0.57	0.40	-0.52	-0.11	Covered/w/another[2551]
YHR004C	NEM1	"Catalytic subunit of Nem1p-Spo7p phosphatase holoenzyme, which regulates nuclear growth by controlling recruitment of Pah1p onto promoters of phospholipid biosynthetic genes; required for normal nuclear envelope morphology and sporulation"	Verified	chr8:111749-113089	111749-113089	99.1%	103.07	188.83	120.37	143.69	218.93	136.17	145.95	132.03	177.55	0.54	0.54	0.74	0.43	0.74	Covered/w/another[2551]
YHR005C	GPA1	GTP-binding alpha subunit of the heterotrimeric G protein that couples to pheromone receptors; negatively regulates the mating pathway by sequestering G(beta)gamma and by triggering an adaptive response; activates Vps34p at the endosome	Verified	chr8:113494-114912	113494-114912	99.4%	357.16	416.69	376.30	369.21	240.23	133.23	386.93	372.75	186.73	1.43	1.51	0.77	-1.00	-0.89	Frag>80[2552,2553]
YHR005C-A	MRS11	"Essential protein of the mitochondrial intermembrane space, forms a complex with Tim9p (TIM10 complex) that mediates insertion of hydrophobic proteins at the inner membrane, has homology to Mrs5p, which is also involved in this process"	Verified	chr8:115615-115896	115615-115896	99.3%	2609.94	2395.72	2477.83	2306.46	1556.68	1017.55	2502.83	2392.15	1287.12	9.24	9.71	5.33	-0.89	-2.08	Matched[2554]
YHR006W	STP2	"Transcription factor, activated by proteolytic processing in response to signals from the SPS sensor system for external amino acids; activates transcription of amino acid permease genes"	Verified	chr8:117809-119434	117809-119434	98.7%	103.46	105.33	99.10	95.36	203.18	161.43	104.40	97.23	182.30	0.39	0.39	0.76	0.91	1.19	Matched[2555]
YHR007C	ERG11	"Lanosterol 14-alpha-demethylase, catalyzes the C-14 demethylation of lanosterol to form 4,4''-dimethyl cholesta-8,14,24-triene-3-beta-ol in the ergosterol biosynthesis pathway; member of the cytochrome P450 family"	Verified	chr8:120086-121678	120086-121678	98.8%	1868.68	2499.40	1424.69	1406.27	645.97	527.19	2184.04	1415.48	586.58	8.06	5.75	2.43	-1.27	-1.06	Matched[2557]
YHR007C-A		Putative protein of unknown function; identified by expression profiling and mass spectrometry	Uncharacterized	chr8:122545-122760	122545-122760	98.1%	99.13	160.50	122.74	61.37	472.07	240.76	129.82	92.05	356.41	0.48	0.37	1.48	1.95	NaN	Matched[2559]
YHR008C	SOD2	"Mitochondrial superoxide dismutase, protects cells against oxygen toxicity; phosphorylated"	Verified	chr8:122884-123585	122884-123585	98.6%	1164.11	1403.86	1389.42	1387.98	4393.57	3953.06	1283.99	1388.70	4173.32	4.74	5.64	17.29	1.59	1.40	Matched[2560]
YHR009C		Putative protein of unknown function; not an essential gene	Uncharacterized	chr8:124104-125675	124104-125675	98.8%	573.82	647.24	529.38	456.61	501.69	488.17	610.53	493.00	494.93	2.25	2.00	2.05	0.01	0.29	Matched[2562]
YHR010W	RPL27A	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl27Bp and has similarity to rat L27 ribosomal protein"	Verified	chr8:126515-127486	126515-126545,127107-127486	90.5%	10690.57	8136.23	9157.96	7757.11	2274.70	1833.74	9413.40	8457.54	2054.22	34.75	34.33	8.51	-2.04	-2.71	Matched[2563]
YHR011W	DIA4	"Probable mitochondrial seryl-tRNA synthetase, mutant displays increased invasive and pseudohyphal growth"	Verified	chr8:127774-129114	127774-129114	98.4%	67.42	86.36	67.42	56.06	81.06	37.12	76.89	61.74	59.09	0.28	0.25	0.24	-0.06	0.19	Matched[2564]
YHR012W	VPS29	Endosomal protein that is a subunit of the membrane-associated retromer complex essential for endosome-to-Golgi retrograde transport; forms a subcomplex with Vps35p and Vps26p that selects cargo proteins for endosome-to-Golgi retrieval	Verified	chr8:129475-130442	129475-129522,129642-130442	98.5%	261.87	248.72	222.41	194.91	412.54	263.07	255.29	208.66	337.80	0.94	0.85	1.40	0.70	0.10	Matched[2565]
YHR013C	ARD1	"Subunit of the N-terminal acetyltransferase NatA (Nat1p, Ard1p, Nat5p); N-terminally acetylates many proteins, which influences multiple processes such as the cell cycle, heat-shock resistance, mating, sporulation, and telomeric silencing"	Verified	chr8:130724-131440	130724-131440	99.0%	390.05	368.93	353.44	340.77	176.02	136.59	379.49	347.10	156.30	1.40	1.41	0.65	-1.15	-0.76	Matched[2566]
YHR014W	SPO13	"Meiosis-specific protein, involved in maintaining sister chromatid cohesion during meiosis I as well as promoting proper attachment of kinetochores to the spindle during meiosis I and meiosis II"	Verified	chr8:132040-132915	132040-132915	99.0%	17.30	14.99	16.14	16.14	19.60	13.84	16.14	16.14	16.72	0.06	0.07	0.07	0.05	-0.31	
YHR015W	MIP6	"Putative RNA-binding protein, interacts with Mex67p, which is a component of the nuclear pore involved in nuclear mRNA export"	Verified	chr8:134547-136526	134547-136526	98.9%	6.13	4.09	3.06	3.57	9.70	7.15	5.11	3.32	8.43	0.02	0.01	0.03	1.34	0.48	Overlap[2567]
YHR016C	YSC84	Protein involved in the organization of the actin cytoskeleton; contains SH3 domain similar to Rvs167p	Verified	chr8:136874-138448	136874-138233,138402-138448	98.9%	199.72	308.21	279.47	295.28	760.82	737.83	253.97	287.37	749.33	0.94	1.17	3.10	1.38	1.79	Covered/w/another[2567]
YHR017W	YSC83	"Non-essential mitochondrial protein of unknown function; mRNA induced during meiosis, peaking between mid to late prophase of meiosis I; similar to S. douglasii YSD83"	Verified	chr8:138687-139844	138687-139844	98.9%	121.33	141.41	122.20	102.13	403.27	310.75	131.37	112.17	357.01	0.48	0.46	1.48	1.67	1.01	Covered/w/another[2567]
YHR018C	ARG4	"Argininosuccinate lyase, catalyzes the final step in the arginine biosynthesis pathway"	Verified	chr8:140004-141395	140004-141395	99.1%	392.16	1119.21	403.76	523.36	356.64	286.33	755.69	463.56	321.48	2.79	1.88	1.33	-0.53	-0.22	Covered/w/another[2567]
YHR019C	DED81	"Cytosolic asparaginyl-tRNA synthetase, required for protein synthesis, catalyzes the specific attachment of asparagine to its cognate tRNA"	Verified	chr8:141887-143551	141887-143551	98.8%	1493.31	1462.93	1396.68	1411.26	385.94	432.74	1478.12	1403.97	409.34	5.46	5.70	1.70	-1.78	-1.04	Frag>80[2568,2569]
YHR020W		"Protein of unknown function that may interact with ribosomes, based on co-purification experiments; has similarity to proline-tRNA ligase; YHR020W is an essential gene"	Verified	chr8:143989-146055	143989-146055	98.6%	743.47	550.25	564.47	479.14	75.52	33.84	646.86	521.80	54.68	2.39	2.12	0.23	-3.25	-2.53	Matched[2570]
YHR021C	RPS27B	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps27Ap and has similarity to rat S27 ribosomal protein	Verified	chr8:147864-148662	147864-148109,148660-148662	96.6%	9843.70	8030.50	9190.78	7523.13	2391.27	1480.51	8937.10	8356.96	1935.89	32.99	33.92	8.02	-2.11	-3.07	Matched[2572]
YHR021W-A	ECM12	Non-essential protein of unknown function	Uncharacterized	chr8:149218-149673	149218-149673	99.2%	28.73	72.93	39.78	19.89	212.15	165.75	50.83	29.83	188.95	0.19	0.12	0.78	2.66	-0.44	Covered/w/another[2573]
YHR022C		Putative protein of unknown function; YHR022C is not an essential gene.	Uncharacterized	chr8:149568-150338	149568-150338	99.1%	54.97	81.14	34.03	40.57	151.82	180.61	68.06	37.30	166.21	0.25	0.15	0.69	2.16	3.44	Covered/w/another[2573]
YHR022C-A		"Putative protein of unknown function, identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr8:151210-151299	151210-151299	98.8%	0.00	44.99	11.25	22.49	33.74	22.49	22.49	16.87	28.12	0.08	0.07	0.12	0.74	NaN	Covered/w/another[2573]
YHR023W	MYO1	"Type II myosin heavy chain, required for wild-type cytokinesis and cell separation; localizes to the actomyosin ring; binds to myosin light chains Mlc1p and Mlc2p through its IQ1 and IQ2 motifs respectively"	Verified	chr8:151659-157445	151659-157445	98.8%	144.36	157.83	123.19	114.09	79.97	101.31	151.10	118.64	90.64	0.56	0.48	0.38	-0.39	-0.13	Covered/w/another[2574]
YHR024C	MAS2	"Larger subunit of the mitochondrial processing protease (MPP), essential processing enzyme that cleaves the N-terminal targeting sequences from mitochondrially imported proteins"	Verified	chr8:157737-159185	157737-159185	99.1%	217.36	184.62	213.18	190.89	147.00	133.07	200.99	202.04	140.03	0.74	0.82	0.58	-0.53	0.02	Covered/w/another[2574]
YHR025W	THR1	"Homoserine kinase, conserved protein required for threonine biosynthesis; expression is regulated by the GCN4-mediated general amino acid control pathway"	Verified	chr8:159431-160504	159431-160504	98.9%	838.17	901.27	795.79	792.97	226.97	245.80	869.72	794.38	236.38	3.21	3.22	0.98	-1.75	-0.76	Matched[2575]
YHR026W	PPA1	"Subunit c'' of the vacuolar ATPase, which functions in acidification of the vacuole; one of three proteolipid subunits of the V0 domain"	Verified	chr8:160837-161478	160837-161478	99.0%	1631.25	1922.27	1639.12	1670.58	1039.78	869.90	1776.76	1654.85	954.84	6.56	6.72	3.96	-0.79	-0.47	Matched[2576]
YHR027C	RPN1	"Non-ATPase base subunit of the 19S regulatory particle of the 26S proteasome; may participate in the recognition of several ligands of the proteasome; contains a leucine-rich repeat (LRR) domain, a site for protein?protein interactions"	Verified	chr8:161723-164704	161723-164704	99.2%	473.73	377.02	466.97	462.91	484.89	514.31	425.38	464.94	499.60	1.57	1.89	2.07	0.10	0.27	Covered/w/another[2577]
YHR028W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:167345-167665	167345-167665	97.7%	57.42	70.18	108.45	92.50	63.80	63.80	63.80	100.48	63.80	0.24	0.41	0.26	-0.66	NaN	Overlap[2577,2578]
YHR028C	DAP2	"Dipeptidyl aminopeptidase, synthesized as a glycosylated precursor; localizes to the vacuolar membrane; similar to Ste13p"	Verified	chr8:164971-167427	164971-167427	99.1%	282.42	308.69	266.00	288.58	378.48	391.61	295.56	277.29	385.04	1.09	1.13	1.60	0.47	0.76	Covered/w/another[2577]
YHR029C	YHI9	"Protein of unknown function that is a member of the PhzF superfamily, although unlike its bacterial homolog, is most likely not involved in phenazine production; possibly involved in a membrane regulation metabolic pathway"	Verified	chr8:167670-168554	167670-168554	99.0%	169.98	271.51	195.08	168.84	254.40	167.70	220.74	181.96	211.05	0.81	0.74	0.87	0.21	0.23	Matched[2578]
YHR030C	SLT2	Serine/threonine MAP kinase involved in regulating the maintenance of cell wall integrity and progression through the cell cycle; regulated by the PKC1-mediated signaling pathway	Verified	chr8:168883-170337	168883-170337	97.7%	211.71	204.68	183.58	155.44	437.49	320.03	208.19	169.51	378.76	0.77	0.69	1.57	1.16	0.93	Matched[2579]
YHR031C	RRM3	DNA helicase involved in rDNA replication and Ty1 transposition; relieves replication fork pauses at telomeric regions; structurally and functionally related to Pif1p	Verified	chr8:170792-172963	170792-172963	99.2%	79.84	84.48	61.73	49.20	42.24	46.42	82.16	55.47	44.33	0.30	0.23	0.18	-0.32	-0.02	Matched[2580]
YHR032W		Putative protein of unknown function; putative substrate of the cAMP-dependent protein kinase (PKA)	Uncharacterized	chr8:173337-175082	173337-175082	98.4%	206.65	190.35	136.79	113.51	105.36	107.69	198.50	125.15	106.52	0.73	0.51	0.44	-0.23	0.21	Covered/w/another[2581]
YHR032W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF YHR032C-A"	Dubious	chr8:175188-175367	175188-175367	98.9%	331.38	286.45	252.75	241.52	207.82	162.88	308.92	247.13	185.35	1.14	1.00	0.77	-0.42	NaN	Covered/w/another[2581]
YHR032C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF YHR032W-A"	Dubious	chr8:175268-175387	175268-175387	99.0%	345.26	294.74	277.89	193.68	210.53	218.95	320.00	235.79	214.74	1.18	0.96	0.89	-0.13	NaN	Covered/w/another[2581]
YHR033W		Putative protein of unknown function; epitope-tagged protein localizes to the cytoplasm	Uncharacterized	chr8:175541-176812	175541-176812	98.4%	83.06	77.47	106.22	91.84	179.69	92.64	80.26	99.03	136.16	0.30	0.40	0.56	0.46	0.37	Covered/w/another[2581]
YHR034C	PIH1	"Protein of unresolved function; may function in protein folding and/or rRNA processing, interacts with a chaperone (Hsp82p), two chromatin remodeling factors (Rvb1p, Rvb2p) and two rRNA processing factors (Rrp43p, Nop58p)"	Verified	chr8:176958-177992	176958-177992	98.9%	77.17	77.17	78.14	72.28	117.22	72.28	77.17	75.21	94.75	0.28	0.31	0.39	0.33	0.72	Covered/w/another[2581]
YHR035W		Putative protein of unknown function; not an essential gene	Uncharacterized	chr8:178212-180104	178212-180104	99.0%	20.27	25.07	19.74	14.40	26.67	9.07	22.67	17.07	17.87	0.08	0.07	0.07	0.07	-1.06	Frag<80[2582]
YHR036W	BRL1	"Essential nuclear envelope integral membrane protein identified as a suppressor of a cold-sensitive mutant of CRM1, a karyopherin; homologous to and interacts with Brr6p, which is a nuclear envelope protein involved in nuclear export"	Verified	chr8:180338-181753	180338-181753	98.6%	72.34	53.00	68.05	28.65	32.95	25.79	62.67	48.35	29.37	0.23	0.20	0.12	-0.72	-0.21	Covered[2583]
YHR037W	PUT2	"Delta-1-pyrroline-5-carboxylate dehydrogenase, nuclear-encoded mitochondrial protein involved in utilization of proline as sole nitrogen source; deficiency of the human homolog causes HPII, an autosomal recessive inborn error of metabolism"	Verified	chr8:181970-183697	181970-183697	98.8%	310.92	276.37	340.78	346.64	483.07	412.80	293.65	343.71	447.94	1.08	1.40	1.86	0.38	0.55	Matched[2584]
YHR038W	RRF1	"Mitochondrial ribosome recycling factor, essential for mitochondrial protein synthesis and for the maintenance of the respiratory function of mitochondria"	Verified	chr8:184059-184751	184059-184751	98.7%	114.00	116.92	168.08	154.92	210.46	116.92	115.46	161.50	163.69	0.43	0.66	0.68	0.02	-0.12	Matched[2585]
YHR039C	MSC7	"Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; msc7 mutants are defective in directing meiotic recombination events to homologous chromatids"	Verified	chr8:184868-186802	184868-186802	98.9%	435.61	472.70	458.07	415.24	186.99	135.80	454.16	436.66	161.40	1.68	1.77	0.67	-1.44	-1.11	Matched[2586]
YHR039C-A	VMA10	"Vacuolar H+ ATPase subunit G of the catalytic (V1) sector, involved in vacuolar acidification"	Verified	chr8:187166-187672	187166-187507,187670-187672	99.4%	2782.02	3085.30	2455.41	2265.86	2286.27	1458.08	2933.66	2360.63	1872.17	10.83	9.58	7.76	-0.33	-1.06	Covered/w/another[2587]
YHR040W	BCD1	Essential protein required for the accumulation of box C/D snoRNA	Verified	chr8:187917-189017	187917-189017	97.9%	81.61	63.99	51.01	56.57	11.13	25.04	72.80	53.79	18.08	0.27	0.22	0.07	-1.57	-1.28	Covered/w/another[2587]
YHR041C	SRB2	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; general transcription factor involved in telomere maintenance	Verified	chr8:189124-189857	189124-189742,189844-189857	98.3%	307.03	345.61	307.03	237.91	244.34	122.17	326.32	272.47	183.26	1.20	1.11	0.76	-0.57	-0.93	Matched[2588]
YHR042W	NCP1	NADP-cytochrome P450 reductase; involved in ergosterol biosynthesis; associated and coordinately regulated with Erg11p	Verified	chr8:190536-192611	190536-192611	98.7%	767.43	1115.77	740.11	693.76	233.20	329.32	941.60	716.93	281.26	3.48	2.91	1.17	-1.35	-0.68	Matched[2589]
YHR043C	DOG2	"2-deoxyglucose-6-phosphate phosphatase, member of a family of low molecular weight phosphatases, similar to Dog1p, induced by oxidative and osmotic stress, confers 2-deoxyglucose resistance when overexpressed"	Verified	chr8:192798-193538	192798-193538	53.3%	382.48	430.61	496.46	476.20	1198.10	802.96	406.54	486.33	1000.53	1.50	1.97	4.15	1.04	0.70	Frag<80[2590]
YHR044C	DOG1	"2-deoxyglucose-6-phosphate phosphatase, similar to Dog2p, member of a family of low molecular weight phosphatases; confers 2-deoxyglucose resistance when overexpressed, in vivo substrate has not yet been identified"	Verified	chr8:194061-194801	194061-194801	52.9%	40.78	33.14	35.68	43.33	91.76	43.33	36.96	39.51	67.54	0.14	0.16	0.28	0.77	0.32	Frag<80[2591]
YHR045W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum	Uncharacterized	chr8:195544-197226	195544-197226	98.8%	202.64	189.41	175.58	160.55	122.67	79.97	196.03	168.07	101.32	0.72	0.68	0.42	-0.73	-0.66	Matched[2592]
YHR046C	INM1	"Inositol monophosphatase, involved in biosynthesis of inositol and in phosphoinositide second messenger signaling; INM1 expression increases in the presence of inositol and decreases upon exposure to antibipolar drugs lithium and valproate"	Verified	chr8:197391-198278	197391-198278	99.2%	233.81	237.22	165.71	107.83	69.24	30.65	235.52	136.77	49.94	0.87	0.56	0.21	-1.45	-1.21	Matched[2593]
YHR047C	AAP1	"Arginine/alanine aminopeptidase, overproduction stimulates glycogen accumulation"	Verified	chr8:198733-201303	198733-201303	98.7%	184.89	223.92	206.57	232.99	187.65	203.03	204.41	219.78	195.34	0.75	0.89	0.81	-0.17	0.34	Frag>80[2594,2595,2596]
YHR048W		"Putative protein of unknown function, has similarity to multidrug resistance proteins; expression of gene is up-regulated in cells exhibiting reduced susceptibility to azoles"	Uncharacterized	chr8:204600-206144	204600-206144	98.8%	51.76	60.28	45.87	34.73	39.97	23.59	56.02	40.30	31.78	0.21	0.16	0.13	-0.34	-0.79	Matched[2599]
YHR049W	FSH1	Serine hydrolase that localizes to both the nucleus and cytoplasm; sequence is similar to Fsh2p and Fsh3p	Verified	chr8:206455-207186	206455-207186	98.8%	773.26	504.90	774.64	633.54	1593.54	1067.90	639.08	704.09	1330.72	2.36	2.86	5.51	0.92	0.93	Matched[2600]
YHR049C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:207213-207524	207213-207524	98.6%	162.51	149.51	162.51	159.26	393.28	211.27	156.01	160.89	302.28	0.58	0.65	1.25	0.91	-0.10	Frag<80[2600]
YHR050W	SMF2	Divalent metal ion transporter involved in manganese homeostasis; has broad specificity for di-valent and tri-valent metals; post-translationally regulated by levels of metal ions; member of the Nramp family of metal transport proteins	Verified	chr8:207648-209297	207648-209297	98.7%	194.00	171.90	203.21	182.34	211.19	150.41	182.95	192.78	180.80	0.68	0.78	0.75	-0.09	0.26	Matched[2601]
YHR050W-A		Protein of unknown function; identified by expression profiling and mass spectrometry	Uncharacterized	chr8:209469-209639	209469-209639	99.2%	282.98	271.19	389.09	383.20	448.05	347.83	277.08	386.15	397.94	1.02	1.57	1.65	0.04	NaN	Matched[2602]
YHR051W	COX6	"Subunit VI of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; expression is regulated by oxygen levels"	Verified	chr8:209699-210145	209699-210145	98.6%	746.38	843.94	862.09	1048.11	1901.12	1431.52	795.16	955.10	1666.32	2.94	3.88	6.90	0.80	0.48	Frag>80[2602,2603]
YHR052W	CIC1	Essential protein that interacts with proteasome components and has a potential role in proteasome substrate specificity; also copurifies with 66S pre-ribosomal particles	Verified	chr8:210842-211972	210842-211972	98.8%	399.16	207.64	248.81	239.86	22.37	6.26	303.40	244.33	14.32	1.12	0.99	0.06	-4.09	-3.58	Matched[2604]
YHR052W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps CUP1-1"	Dubious	chr8:212512-212706	212512-212706	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YHR053C	CUP1-1	"Metallothionein, binds copper and mediates resistance to high concentrations of copper and cadmium; locus is variably amplified in different strains, with two copies, CUP1-1 and CUP1-2, in the genomic sequence reference strain S288C"	Verified	chr8:212537-212722	212537-212722	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.35	
YHR054C		Putative protein of unknown function	Uncharacterized	chr8:213187-214251	213187-214251	2.3%	0.00	80.00	200.00	0.00	0.00	40.00	40.00	100.00	20.00	0.15	0.41	0.08	-2.32	0.34	Frag<80[2605]
YHR054W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps CUP1-2"	Dubious	chr8:214510-214704	214510-214704	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YHR055C	CUP1-2	"Metallothionein, binds copper and mediates resistance to high concentrations of copper and cadmium; locus is variably amplified in different strains, with two copies, CUP1-1 and CUP1-2, in the genomic sequence reference strain S288C"	Verified	chr8:214535-214720	214535-214720	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.36	
YHR056W-A		"Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:217408-217842	217408-217842	98.7%	72.20	79.18	76.86	65.21	39.59	72.20	75.69	71.03	55.90	0.28	0.29	0.23	-0.35	NaN	Covered[2606]
YHR056C	RSC30	Component of the RSC chromatin remodeling complex; non-essential gene required for regulation of ribosomal protein genes and the cell wall/stress response; highly similar to Rsc3p; null mutants are osmosensitive	Verified	chr8:215185-217836	215185-217836	60.2%	106.51	116.53	107.76	103.38	79.57	98.36	111.52	105.57	88.97	0.41	0.43	0.37	-0.25	0.34	Frag<80[2606,2607]
YHR057C	CPR2	"Peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; has a potential role in the secretory pathway"	Verified	chr8:218228-218845	218228-218845	99.2%	433.84	455.05	428.95	402.85	583.89	494.19	444.44	415.90	539.04	1.64	1.69	2.23	0.37	0.69	Frag>80[2607,2608]
YHR058C	MED6	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation	Verified	chr8:218999-219886	218999-219886	99.2%	68.13	88.57	77.21	69.27	65.86	48.83	78.35	73.24	57.34	0.29	0.30	0.24	-0.35	-0.05	Covered/w/another[2609]
YHR059W	FYV4	"Protein of unknown function, required for survival upon exposure to K1 killer toxin"	Verified	chr8:220110-220502	220110-220502	98.6%	159.95	216.70	208.96	154.79	175.43	95.45	188.33	181.88	135.44	0.70	0.74	0.56	-0.43	-0.14	Covered/w/another[2609]
YHR060W	VMA22	"Integral membrane protein that is required for vacuolar H+-ATPase (V-ATPase) function, although not an actual component of the V-ATPase complex; functions in the assembly of the V-ATPase; localized to the yeast endoplasmic reticulum (ER)"	Verified	chr8:220727-221272	220727-221272	98.4%	269.79	303.28	247.46	223.27	280.95	197.22	286.53	235.37	239.09	1.06	0.96	0.99	0.02	-0.48	Covered/w/another[2609]
YHR061C	GIC1	"Protein of unknown function involved in initiation of budding and cellular polarization, interacts with Cdc42p via the Cdc42/Rac-interactive binding (CRIB) domain"	Verified	chr8:221536-222480	221536-222480	98.9%	120.88	126.23	86.65	78.09	83.44	85.58	123.55	82.37	84.51	0.46	0.33	0.35	0.04	-0.26	Covered/w/another[2609]
YHR062C	RPP1	"Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends"	Verified	chr8:222879-223760	222879-223760	99.1%	112.15	104.14	115.59	89.27	25.18	11.44	108.15	102.43	18.31	0.40	0.42	0.08	-2.48	-1.69	Covered/w/another[2609]
YHR063C	PAN5	"2-dehydropantoate 2-reductase, part of the pantothenic acid pathway, structurally homologous to E. coli panE"	Verified	chr8:224032-225171	224032-225171	99.2%	337.72	339.49	350.98	296.17	242.24	183.00	338.60	323.57	212.62	1.25	1.31	0.88	-0.61	-0.50	Matched[2610]
YHR063W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:225444-225779	225444-225779	99.6%	2196.49	1347.78	1855.81	1598.80	851.70	791.93	1772.13	1727.31	821.82	6.54	7.01	3.41	-1.07	NaN	Matched[2611]
YHR064C	SSZ1	Hsp70 protein that interacts with Zuo1p (a DnaJ homolog) to form a ribosome-associated complex that binds the ribosome via the Zuo1p subunit; also involved in pleiotropic drug resistance via sequential activation of PDR1 and PDR5; binds ATP	Verified	chr8:225527-227143	225527-227143	98.9%	1723.58	1076.30	1539.09	1500.31	580.99	714.82	1399.94	1519.70	647.90	5.17	6.17	2.68	-1.23	-0.57	Frag>80[2611,2612]
YHR065C	RRP3	"Protein involved in rRNA processing; required for maturation of the 35S primary transcript of pre-rRNA and for cleavage leading to mature 18S rRNA; homologous to eIF-4a, which is a DEAD box RNA-dependent ATPase with helicase activity"	Verified	chr8:227534-229039	227534-229039	99.2%	244.89	185.34	192.03	171.96	24.09	11.37	215.12	182.00	17.73	0.79	0.74	0.07	-3.36	-3.72	Matched[2613]
YHR066W	SSF1	"Constituent of 66S pre-ribosomal particles, required for ribosomal large subunit maturation; functionally redundant with Ssf2p; member of the Brix family"	Verified	chr8:229337-230698	229337-230698	58.4%	237.67	153.42	145.87	101.86	10.06	11.32	195.55	123.87	10.69	0.72	0.50	0.04	-3.53	-3.97	Frag>80[2614,2615,2616]
YHR067W	HTD2	"Mitochondrial 3-hydroxyacyl-thioester dehydratase involved in fatty acid biosynthesis, required for respiratory growth and for normal mitochondrial morphology"	Verified	chr8:230972-231814	230972-231814	98.9%	112.79	93.60	90.00	82.80	157.19	85.20	103.19	86.40	121.19	0.38	0.35	0.50	0.49	0.54	Matched[2617]
YHR068W	DYS1	"Deoxyhypusine synthase, catalyzes formation of deoxyhypusine, the first step in hypusine biosynthesis; triggers posttranslational hypusination of translation elongation factor eIF-5A and regulates its intracellular levels; tetrameric"	Verified	chr8:232135-233298	232135-233298	98.7%	1938.28	1715.47	1561.41	1491.79	732.84	619.69	1826.87	1526.60	676.26	6.74	6.20	2.80	-1.17	-1.04	Matched[2618]
YHR069C	RRP4	"3'-5' exoribonuclease involved in rRNA processing; component of the exosome 3->5 exonuclease complex with Rrp41p, Rrp42p, Rrp43p and Dis3p"	Verified	chr8:233581-234660	233581-234660	99.1%	183.18	174.77	139.25	101.87	75.70	38.32	178.97	120.56	57.01	0.66	0.49	0.24	-1.08	-1.08	Covered/w/another[2619]
YHR070W	TRM5	"tRNA(m(1)G37)methyltransferase, methylates a tRNA base adjacent to the anticodon that has a role in prevention of frameshifting; highly conserved across Archaea, Bacteria, and Eukarya"	Verified	chr8:234883-236382	234883-236382	98.6%	125.72	114.23	93.28	95.31	29.06	24.33	119.98	94.29	26.70	0.44	0.38	0.11	-1.82	-1.73	Covered/w/another[2619]
YHR069C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:234876-235238	234876-235238	98.7%	47.45	97.70	69.78	66.99	36.29	25.12	72.58	68.39	30.70	0.27	0.28	0.13	-1.16	NaN	Covered/w/another[2619]
YHR070C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene TRM5/YHR070W"	Dubious	chr8:236104-236514	236104-236514	98.4%	197.88	136.04	133.57	121.20	27.21	27.21	166.96	127.38	27.21	0.62	0.52	0.11	-2.23	NaN	Covered/w/another[2619]
YHR071W	PCL5	"Cyclin, interacts with Pho85p cyclin-dependent kinase (Cdk), induced by Gcn4p at level of transcription, specifically required for Gcn4p degradation, may be sensor of cellular protein biosynthetic capacity"	Verified	chr8:237006-237695	237006-237695	98.9%	675.75	1715.02	656.69	712.39	1238.62	1168.26	1195.38	684.54	1203.44	4.41	2.78	4.99	0.81	0.94	Matched[2620]
YHR072W	ERG7	"Lanosterol synthase, an essential enzyme that catalyzes the cyclization of squalene 2,3-epoxide, a step in ergosterol biosynthesis"	Verified	chr8:239100-241295	239100-241295	98.7%	240.79	193.74	208.96	175.75	89.95	74.27	217.27	192.36	82.11	0.80	0.78	0.34	-1.23	-1.12	Covered/w/another[2621]
YHR071C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF ERG7/YHR072W"	Dubious	chr8:238912-239232	238912-239232	98.9%	66.13	94.48	75.58	69.28	22.04	37.79	80.30	72.43	29.92	0.30	0.29	0.12	-1.28	NaN	Covered/w/another[2621]
YHR072W-A	NOP10	"Constituent of small nucleolar ribonucleoprotein particles containing H/ACA-type snoRNAs, which are required for pseudouridylation and processing of pre-18S rRNA"	Verified	chr8:241666-241842	241666-241842	98.4%	2119.67	1390.14	1545.24	1390.14	350.41	292.96	1754.91	1467.69	321.68	6.48	5.96	1.33	-2.19	-2.56	Matched[2622]
YHR073W	OSH3	"Member of an oxysterol-binding protein family with seven members in S. cerevisiae; family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability"	Verified	chr8:242584-245574	242584-245574	98.7%	156.82	187.98	141.24	143.61	102.63	108.05	172.40	142.43	105.34	0.64	0.58	0.44	-0.44	0.11	Matched[2623]
YHR073W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified ORF YHR073W; identified by expression profiling and mass spectrometry"	Dubious	chr8:242870-243046	242870-243046	98.7%	80.17	131.71	34.36	62.99	57.27	68.72	105.94	48.68	62.99	0.39	0.20	0.26	0.37	NaN	Covered/w/another[2623]
YHR073C-B		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified ORF YHR073W; identified by expression profiling and mass spectrometry"	Dubious	chr8:245424-245504	245424-245504	98.1%	314.47	377.36	352.20	264.15	276.73	176.10	345.91	308.18	226.42	1.28	1.25	0.94	-0.44	NaN	Covered/w/another[2623]
YHR074W	QNS1	"Glutamine-dependent NAD(+) synthetase, essential for the formation of NAD(+) from nicotinic acid adenine dinucleotide"	Verified	chr8:246195-248339	246195-248339	98.7%	310.22	302.66	316.83	302.19	259.69	225.23	306.44	309.51	242.46	1.13	1.26	1.00	-0.35	0.19	Matched[2624]
YHR075C	PPE1	Protein with carboxyl methyl esterase activity that may have a role in demethylation of the phosphoprotein phosphatase catalytic subunit; also identified as a small subunit mitochondrial ribosomal protein	Verified	chr8:248441-249643	248441-249643	99.1%	99.03	148.54	85.60	79.73	188.82	95.67	123.78	82.66	142.25	0.46	0.34	0.59	0.78	0.33	Matched[2625]
YHR076W	PTC7	Mitochondrially localized type 2C protein phosphatase; expression induced by growth on ethanol and by sustained osmotic stress; possible role in carbon source utilization in low oxygen environments	Verified	chr8:251103-252227	251103-251157,251251-252227	98.6%	251.69	279.22	265.45	264.47	337.23	230.06	265.45	264.96	283.64	0.98	1.08	1.18	0.10	0.07	Matched[2627]
YHR077C	NMD2	Protein involved in the nonsense-mediated mRNA decay (NMD) pathway; interacts with Nam7p and Upf3p; involved in telomere maintenance	Verified	chr8:252376-255758	252376-255639,255753-255758	98.7%	186.23	165.47	149.35	139.75	79.32	83.97	175.85	144.55	81.65	0.65	0.59	0.34	-0.82	-0.38	Matched[2628]
YHR078W		High osmolarity-regulated gene of unknown function	Uncharacterized	chr8:256362-258020	256362-258020	99.1%	172.72	199.48	168.46	135.62	153.26	110.69	186.10	152.04	131.97	0.69	0.62	0.55	-0.20	-0.19	Matched[2629]
YHR079C	IRE1	Serine-threonine kinase and endoribonuclease; transmembrane protein that mediates the unfolded protein response (UPR) by regulating Hac1p synthesis through HAC1 mRNA splicing; Kar2p binds inactive Ire1p and releases from it upon ER stress	Verified	chr8:258246-261593	258246-261593	99.1%	81.04	93.70	67.18	56.94	40.67	41.88	87.37	62.06	41.27	0.32	0.25	0.17	-0.59	0.15	Matched[2630]
YHR079C-A	SAE3	"Meiosis specific protein involved in DMC1-dependent meiotic recombination, forms heterodimer with Mei5p; proposed to be an assembly factor for Dmc1p"	Verified	chr8:262194-262555	262194-262356,262443-262555	99.7%	21.81	14.54	3.64	3.64	3.64	32.72	18.18	3.64	18.18	0.07	0.01	0.08	2.32	0.31	
YHR080C		"Protein of unknown function that may interact with ribosomes, based on co-purification experiments; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr8:262803-266840	262803-266840	99.1%	91.69	101.19	105.69	102.69	111.18	125.67	96.44	104.19	118.43	0.36	0.42	0.49	0.18	0.90	Covered/w/another[2631]
YHR081W	LRP1	Substrate-specific nuclear cofactor for exosome activity in the processing of stable RNAs; required for telomere length maintenance; homolog of mammalian nuclear matrix protein C1D involved in regulation of DNA repair and recombination	Verified	chr8:267540-268094	267540-268094	98.2%	348.54	176.11	212.80	154.09	115.57	67.87	262.33	183.44	91.72	0.97	0.74	0.38	-1.00	-1.46	Covered/w/another[2631]
YHR082C	KSP1	Nonessential putative serine/threonine protein kinase of unknown cellular role; overproduction causes allele-specific suppression of the prp20-10 mutation	Verified	chr8:268461-271550	268461-271550	99.2%	309.36	339.06	317.19	331.23	668.33	995.31	324.21	324.21	831.82	1.20	1.32	3.45	1.36	1.83	Covered/w/another[2632]
YHR083W	SAM35	"Essential component of the sorting and assembly machinery (SAM complex or TOB complex) of the mitochondrial outer membrane, which binds precursors of beta-barrel proteins and facilitates their insertion into the outer membrane"	Verified	chr8:272629-273618	272629-273618	98.7%	315.34	352.20	311.25	316.37	293.84	302.03	333.77	313.81	297.94	1.23	1.27	1.23	-0.07	0.29	Covered/w/another[2632]
YHR084W	STE12	"Transcription factor that is activated by a MAP kinase signaling cascade, activates genes involved in mating or pseudohyphal/invasive growth pathways; cooperates with Tec1p transcription factor to regulate genes specific for invasive growth"	Verified	chr8:274176-276242	274176-276242	98.9%	350.63	382.42	331.07	337.92	70.91	99.27	366.53	334.49	85.09	1.35	1.36	0.35	-1.97	-1.47	Matched[2633]
YHR085W	IPI1	Essential component of the Rix1 complex (with Rix1p and Ipi3p) that is required for processing of ITS2 sequences from 35S pre-rRNA; Rix1 complex associates with Mdn1p in pre-60S ribosomal particles	Verified	chr8:276766-277770	276766-277770	98.6%	130.14	65.58	63.56	47.42	15.13	18.16	97.86	55.49	16.65	0.36	0.23	0.07	-1.74	-2.89	Matched[2634]
YHR086W	NAM8	"RNA binding protein, component of the U1 snRNP protein; mutants are defective in meiotic recombination and in formation of viable spores, involved in the formation of DSBs through meiosis-specific splicing of MER2 pre-mRNA"	Verified	chr8:278155-279726	278155-279726	98.8%	140.97	157.71	174.44	188.61	242.68	216.29	149.34	181.53	229.48	0.55	0.74	0.95	0.34	0.45	Frag>80[2635,2636]
YHR086W-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr8:280233-280394	280233-280394	99.1%	0.00	0.00	0.00	6.23	0.00	0.00	0.00	3.11	0.00	0.00	0.01	0.00	-Inf	NaN	
YHR087W		"Protein of unknown function involved in RNA metabolism; this single domain protein has structural similarity to the N-terminal domain of SBDS, the human protein mutated in Shwachman-Diamond Syndrome (the yeast SBDS ortholog = SDO1/YLR022C)"	Verified	chr8:280822-281157	280822-281157	98.3%	181.75	757.29	402.88	396.82	17684.21	11032.19	469.52	399.85	14358.20	1.73	1.62	59.49	5.17	4.26	Frag>80[2637,2638]
YHR088W	RPF1	"Nucleolar protein involved in the assembly of the large ribosomal subunit; constituent of 66S pre-ribosomal particles; contains a sigma(70)-like motif, which is thought to bind RNA"	Verified	chr8:281497-282384	281497-282384	98.5%	250.48	130.39	144.11	97.22	19.44	21.73	190.43	120.66	20.59	0.70	0.49	0.09	-2.55	-3.66	Matched[2639]
YHR089C	GAR1	"Protein component of the H/ACA snoRNP pseudouridylase complex, involved in the modification and cleavage of the 18S pre-rRNA"	Verified	chr8:282683-283300	282683-283300	97.7%	2021.12	1232.55	1590.39	1394.91	142.47	57.98	1626.84	1492.65	100.23	6.01	6.06	0.42	-3.90	-3.15	Covered/w/another[2640]
YHR090C	YNG2	Subunit of the NuA4 histone acetyltransferase complex that acetylates histone H4 and H2A; has similarity to the human tumor suppressor ING1	Verified	chr8:283779-284627	283779-284627	99.2%	111.58	105.64	130.57	78.34	132.94	115.14	108.61	104.46	124.04	0.40	0.42	0.51	0.25	0.30	Covered/w/another[2640]
YHR091C	MSR1	Mitochondrial arginyl-tRNA synthetase	Verified	chr8:284841-286772	284841-286772	99.0%	82.57	93.55	98.25	76.30	81.53	52.79	88.06	87.28	67.16	0.33	0.35	0.28	-0.38	0.17	Covered/w/another[2640]
YHR092C	HXT4	"High-affinity glucose transporter of the major facilitator superfamily, expression is induced by low levels of glucose and repressed by high levels of glucose"	Verified	chr8:287132-288814	287132-288814	83.0%	1263.20	1764.18	2401.15	3079.62	277.69	191.81	1513.69	2740.38	234.75	5.59	11.12	0.97	-3.55	-2.53	Matched[2641]
YHR093W	AHT1	"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; multicopy suppressor of glucose transport defects, likely due to the presence of an HXT4 regulatory element in the region"	Dubious	chr8:289145-289693	289145-289693	98.3%	1.85	1.85	11.12	5.56	7.41	1.85	1.85	8.34	4.63	0.01	0.03	0.02	-0.85	-0.58	
YHR094C	HXT1	"Low-affinity glucose transporter of the major facilitator superfamily, expression is induced by Hxk2p in the presence of glucose and repressed by Rgt1p when glucose is limiting"	Verified	chr8:290916-292628	290916-292628	82.8%	45.11	9.87	11.28	6.34	11.28	2.82	27.49	8.81	7.05	0.10	0.04	0.03	-0.32	-2.32	Frag<80[2642]
YHR095W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:292946-293380	292946-293380	97.5%	11.79	0.00	7.07	4.72	0.00	9.43	5.90	5.90	4.72	0.02	0.02	0.02	-0.32	-0.12	
YHR096C	HXT5	"Hexose transporter with moderate affinity for glucose, induced in the presence of non-fermentable carbon sources, induced by a decrease in growth rate, contains an extended N-terminal domain relative to other HXTs"	Verified	chr8:294672-296450	294672-296450	92.3%	20.09	28.01	33.49	24.35	389.06	208.23	24.05	28.92	298.65	0.09	0.12	1.24	3.37	3.44	Frag>80[2643,2644]
YHR097C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and the nucleus	Uncharacterized	chr8:297388-298612	297388-298363,298488-298612	98.9%	167.99	214.80	310.27	253.36	813.31	684.80	191.39	281.81	749.05	0.71	1.14	3.10	1.41	1.72	Frag>80[2645,2646]
YHR098C	SFB3	"Member of the Sec24p family; forms a complex, with Sec23p, that is involved in sorting of Pma1p into COPII vesicles; peripheral ER membrane protein; potential Cdc28p substrate"	Verified	chr8:299148-301937	299148-301937	99.0%	291.80	293.25	303.03	276.96	200.21	257.77	292.53	289.99	228.99	1.08	1.18	0.95	-0.34	0.26	Matched[2647]
YHR099W	TRA1	"Subunit of SAGA and NuA4 histone acetyltransferase complexes; interacts with acidic activators (e.g., Gal4p) which leads to transcription activation; similar to human TRRAP, which is a cofactor for c-Myc mediated oncogenic transformation"	Verified	chr8:302764-313998	302764-313998	99.0%	69.96	57.46	56.47	48.38	19.51	39.11	63.71	52.42	29.31	0.24	0.21	0.12	-0.84	-0.32	Frag<80[2648]
YHR100C		"Putative protein of unknown function, required for respiratory growth; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr8:314119-314676	314119-314676	98.8%	126.95	90.68	116.06	96.12	70.73	61.66	108.81	106.09	66.19	0.40	0.43	0.27	-0.68	-1.05	Covered/w/another[2649]
YHR101C	BIG1	"Integral membrane protein of the endoplasmic reticulum, required for normal content of cell wall beta-1,6-glucan"	Verified	chr8:314877-315971	314877-315774,315862-315971	99.2%	60.01	71.01	47.00	47.00	64.01	40.00	65.51	47.00	52.00	0.24	0.19	0.22	0.15	0.76	Covered/w/another[2649]
YHR102W	KIC1	"Protein kinase of the PAK/Ste20 kinase family, required for cell integrity possibly through regulating 1,6-beta-glucan levels in the wall; physically interacts with Cdc31p (centrin), which is a component of the spindle pole body"	Verified	chr8:316575-319817	316575-319817	98.8%	91.14	94.89	80.84	75.22	68.04	66.48	93.01	78.03	67.26	0.34	0.32	0.28	-0.21	0.35	Matched[2650]
YHR103W	SBE22	Protein involved in the transport of cell wall components from the Golgi to the cell surface; similar in structure and functionally redundant with Sbe2p; involved in bud growth	Verified	chr8:320417-322975	320417-322975	98.8%	215.27	203.40	180.05	166.99	235.05	192.32	209.33	173.52	213.69	0.77	0.70	0.89	0.30	0.53	Matched[2651]
YHR104W	GRE3	"Aldose reductase involved in methylglyoxal, d-xylose and arabinose metabolism; stress induced (osmotic, ionic, oxidative, heat shock, starvation and heavy metals); regulated by the HOG pathway"	Verified	chr8:323412-324395	323412-324395	98.8%	362.03	519.39	503.96	457.68	7925.60	6205.96	440.71	480.82	7065.78	1.63	1.95	29.28	3.88	3.67	Matched[2653]
YHR105W	YPT35	Endosomal protein of unknown function that contains a phox (PX) homology domain and binds to both phosphatidylinositol-3-phosphate (PtdIns(3)P) and proteins involved in ER-Golgi or vesicular transport	Verified	chr8:324769-325413	324769-325413	98.6%	39.30	64.46	44.02	47.16	67.60	45.59	51.88	45.59	56.60	0.19	0.19	0.23	0.31	0.96	Covered/w/another[2654]
YHR106W	TRR2	"Mitochondrial thioredoxin reductase involved in protection against oxidative stress, required with Glr1p to maintain the redox state of Trx3p; contains active-site motif (CAVC) present in prokaryotic orthologs; binds NADPH and FAD"	Verified	chr8:325601-326629	325601-326629	97.7%	122.41	187.10	139.33	126.39	244.82	178.14	154.75	132.86	211.48	0.57	0.54	0.88	0.67	0.59	Covered/w/another[2654]
YHR107C	CDC12	"Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recruit proteins to the neck and can act as a barrier to diffusion at the membrane, and they comprise the 10nm filaments seen with EM"	Verified	chr8:326816-328039	326816-328039	99.1%	347.23	282.07	366.20	316.71	278.77	268.05	314.65	341.46	273.41	1.16	1.39	1.13	-0.32	0.13	Matched[2655]
YHR108W	GGA2	"Golgi-localized protein with homology to gamma-adaptin, interacts with and regulates Arf1p and Arf2p in a GTP-dependent manner in order to facilitate traffic through the late Golgi"	Verified	chr8:328306-330063	328306-330063	98.9%	466.40	471.01	496.88	479.63	428.45	370.36	468.71	488.26	399.41	1.73	1.98	1.65	-0.29	0.17	Matched[2656]
YHR109W	CTM1	"Cytochrome c lysine methyltransferase, trimethylates residue 72 of apo-cytochrome c (Cyc1p) in the cytosol; not required for normal respiratory growth"	Verified	chr8:330313-332070	330313-332070	99.0%	44.83	43.11	46.56	36.21	40.81	36.79	43.97	41.38	38.80	0.16	0.17	0.16	-0.09	0.50	Matched[2657]
YHR110W	ERP5	"Protein with similarity to Emp24p and Erv25p, member of the p24 family involved in ER to Golgi transport"	Verified	chr8:332285-332923	332285-332923	98.6%	438.01	471.34	458.64	449.12	542.75	426.90	454.67	453.88	484.82	1.68	1.84	2.01	0.10	0.19	Matched[2658]
YHR111W	UBA4	"Protein that activates Urm1p before its conjugation to proteins (urmylation); one target is the thioredoxin peroxidase Ahp1p, suggesting a role of urmylation in the oxidative stress response"	Verified	chr8:333075-334397	333075-334397	98.6%	125.71	128.78	113.45	111.15	105.78	60.56	127.25	112.30	83.17	0.47	0.46	0.34	-0.43	0.10	Matched[2659]
YHR112C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr8:334530-335666	334530-335666	98.8%	209.10	364.81	185.07	223.33	389.72	337.23	286.95	204.20	363.47	1.06	0.83	1.51	0.83	1.04	Matched[2660]
YHR113W		Cytoplasmic aspartyl aminopeptidase; cleaves unblocked N-terminal acidic amino acid residues from peptide substrates; forms a 12 subunit homo-oligomeric complex; M18 metalloprotease family member; may interact with ribosomes	Verified	chr8:336340-337812	336340-337812	98.7%	301.95	361.79	321.90	351.47	480.78	416.82	331.87	336.69	448.80	1.23	1.37	1.86	0.41	0.93	Matched[2661]
YHR114W	BZZ1	"SH3 domain protein implicated in the regulation of actin polymerization, able to recruit actin polymerization machinery through its SH3 domains, colocalizes with cortical actin patches and Las17p, interacts with type I myosins"	Verified	chr8:338086-339987	338086-339987	98.5%	199.55	169.67	197.42	191.55	208.09	237.97	184.61	194.48	223.03	0.68	0.79	0.92	0.20	0.77	Matched[2662]
YHR115C	DMA1	"Protein involved in regulating spindle position and orientation, functionally redundant with Dma2p; homolog of S. pombe Dma1 and H. sapiens Chfr"	Verified	chr8:340112-341362	340112-341362	98.6%	187.22	172.63	173.44	136.16	278.80	140.21	179.92	154.80	209.50	0.66	0.63	0.87	0.44	0.75	Matched[2663]
YHR116W	COX23	"Mitochondrial intermembrane space protein that functions in mitochondrial copper homeostasis, essential for functional cytochrome oxidase expression; homologous to Cox17p"	Verified	chr8:341668-342123	341668-342123	98.4%	111.47	122.62	138.23	95.87	236.32	111.47	117.05	117.05	173.90	0.43	0.48	0.72	0.57	0.35	Covered/w/another[2664]
YHR117W	TOM71	Mitochondrial outer membrane protein with similarity to Tom70p; probable minor component of the TOM (translocase of outer membrane) complex responsible for recognition and import of mitochondrially directed proteins	Verified	chr8:342352-344271	342352-344271	98.7%	261.32	216.97	236.51	236.51	146.76	150.98	239.14	236.51	148.87	0.88	0.96	0.62	-0.67	-0.13	Matched[2664]
YHR118C	ORC6	"Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; phosphorylated by Cdc28p"	Verified	chr8:344324-345631	344324-345631	99.4%	83.03	79.95	66.12	75.34	49.20	43.05	81.49	70.73	46.13	0.30	0.29	0.19	-0.62	-0.16	
YHR119W	SET1	"Histone methyltransferase, subunit of the COMPASS (Set1C) complex which methylates histone H3 on lysine 4; required in transcriptional silencing near telomeres and at the silent mating type loci; contains a SET domain"	Verified	chr8:346046-349288	346046-349288	98.7%	123.68	114.31	110.87	76.83	61.84	55.90	118.99	93.85	58.87	0.44	0.38	0.24	-0.67	-0.08	Covered/w/another[2665]
YHR120W	MSH1	"DNA-binding protein of the mitochondria involved in repair of mitochondrial DNA, has ATPase activity and binds to DNA mismatches; has homology to E. coli MutS; transcription is induced during meiosis"	Verified	chr8:349577-352456	349577-352456	98.7%	42.56	44.67	42.56	29.20	22.16	18.29	43.62	35.88	20.23	0.16	0.15	0.08	-0.83	-0.15	Frag<80[2666]
YHR121W	LSM12	Protein of unknown function that may function in RNA processing; interacts with Pbp1p and Pbp4p and associates with ribosomes; contains an RNA-binding LSM domain and an AD domain; GFP-fusion protein is induced by the DNA-damaging agent MMS	Verified	chr8:352759-353322	352759-353322	98.5%	473.48	531.09	439.28	446.48	468.08	293.45	502.29	442.88	380.77	1.85	1.80	1.58	-0.22	-0.59	Matched[2667]
YHR122W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; may be involved in transcription; YHR122W is an essential gene	Uncharacterized	chr8:353628-354323	353628-354323	98.4%	126.98	132.81	106.54	102.16	96.33	56.92	129.90	104.35	76.62	0.48	0.42	0.32	-0.45	-0.71	Frag>80[2668,2669]
YHR123W	EPT1	"sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferase; not essential for viability"	Verified	chr8:354818-356084	354818-354867,354959-356084	99.2%	145.77	194.65	154.35	133.77	189.50	130.34	170.21	144.06	159.92	0.63	0.58	0.66	0.15	0.74	Matched[2670]
YHR124W	NDT80	Meiosis-specific transcription factor required for exit from pachytene and for full meiotic recombination; activates middle sporulation genes; competes with Sum1p for binding to promoters containing middle sporulation elements (MSE)	Verified	chr8:356564-358447	356564-358447	98.8%	30.64	31.71	26.87	17.74	36.55	15.59	31.17	22.31	26.07	0.12	0.09	0.11	0.22	-0.07	
YHR125W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:358861-359166	358861-359166	99.5%	3.29	3.29	3.29	0.00	0.00	3.29	3.29	1.64	1.64	0.01	0.01	0.01	0.00	0.01	
YHR126C		Putative protein of unknown function; transcription dependent upon Azf1p	Uncharacterized	chr8:359705-360184	359705-360184	98.8%	6.32	8.43	0.00	4.22	0.00	8.43	7.38	2.11	4.22	0.03	0.01	0.02	1.00	-0.45	
YHR127W		Protein of unknown function; localizes to the nucleus	Verified	chr8:360916-361647	360916-361647	98.3%	232.07	202.88	172.31	163.97	68.09	43.08	217.47	168.14	55.58	0.80	0.68	0.23	-1.60	-1.22	Matched[2671]
YHR128W	FUR1	"Uracil phosphoribosyltransferase, synthesizes UMP from uracil; involved in the pyrimidine salvage pathway"	Verified	chr8:362118-362768	362118-362768	98.7%	756.67	532.47	629.00	569.83	99.64	96.53	644.57	599.42	98.09	2.38	2.43	0.41	-2.61	-2.11	Matched[2672]
YHR129C	ARP1	Actin-related protein of the dynactin complex; required for spindle orientation and nuclear migration; putative ortholog of mammalian centractin	Verified	chr8:363002-364156	363002-364156	99.3%	74.98	81.09	86.32	54.06	45.34	31.39	78.04	70.19	38.36	0.29	0.28	0.16	-0.87	-0.64	Matched[2673]
YHR130C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:364968-365303	364968-365303	99.2%	114.01	69.01	72.01	57.01	102.01	51.01	91.51	64.51	76.51	0.34	0.26	0.32	0.25	-0.09	Frag<80[2674]
YHR131W-A		Dubious open reading frame unlikely to encode a protein; partially overlaps the uncharacterized ORF YHR131C	Dubious	chr8:367750-367995	367750-367995	99.2%	61.48	53.28	53.28	32.79	20.49	45.08	57.38	43.03	32.79	0.21	0.17	0.14	-0.39	NaN	Covered/w/another[2675]
YHR131C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr8:365343-367895	365343-367895	97.8%	82.06	111.69	78.86	56.84	64.85	76.46	96.87	67.85	70.65	0.36	0.28	0.29	0.06	0.46	Matched[2675]
YHR132C	ECM14	"Putative metalloprotease with similarity to the zinc carboxypeptidase family, required for normal cell wall assembly"	Verified	chr8:368505-369797	368505-369797	99.0%	344.43	327.25	384.26	356.93	335.84	286.63	335.84	370.59	311.24	1.24	1.50	1.29	-0.25	0.18	Matched[2676]
YHR132W-A		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus	Uncharacterized	chr8:370057-370452	370057-370452	98.5%	399.83	361.38	463.90	399.83	581.80	335.75	380.61	431.87	458.78	1.40	1.75	1.90	0.09	-0.38	Covered/w/another[2677]
YHR133C	NSG1	"Protein involved in regulation of sterol biosynthesis; specifically stabilizes Hmg2p, one of two HMG-CoA isoenzymes that catalyze the rate-limiting step in sterol biosynthesis; homolog of mammalian INSIG proteins"	Verified	chr8:370725-371600	370725-371600	98.9%	529.69	508.92	503.15	512.38	255.04	231.96	519.31	507.77	243.50	1.92	2.06	1.01	-1.06	-0.82	Covered/w/another[2677]
YHR134W	WSS1	"Sumoylated protein of unknown function, identified based on genetic interactions with SMT3; UV-sensitive mutant phenotype and genetic interactions suggest a role in the DNA damage response, processing stalled or collapsed replication forks"	Verified	chr8:371752-372561	371752-372561	98.4%	95.39	138.06	106.68	80.33	91.62	70.29	116.72	93.50	80.95	0.43	0.38	0.34	-0.21	-0.05	Covered/w/another[2677]
YHR135C	YCK1	"Palmitoylated, plasma membrane-bound casein kinase I isoform; shares redundant functions with Yck2p in morphogenesis, proper septin assembly, endocytic trafficking; provides an essential function overlapping with that of Yck2p"	Verified	chr8:372697-374313	372697-374313	98.5%	466.54	413.79	448.96	474.70	325.89	327.77	440.17	461.83	326.83	1.62	1.87	1.35	-0.50	-0.02	Covered/w/another[2677]
YHR136C	SPL2	"Protein with similarity to cyclin-dependent kinase inhibitors, overproduction suppresses a plc1 null mutation; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern"	Verified	chr8:374657-375103	374657-375103	99.0%	754.52	806.48	860.69	652.86	641.57	307.23	780.50	756.78	474.40	2.88	3.07	1.97	-0.67	-0.72	Covered/w/another[2677]
YHR137W	ARO9	"Aromatic aminotransferase II, catalyzes the first step of tryptophan, phenylalanine, and tyrosine catabolism"	Verified	chr8:375712-377253	375712-377253	98.9%	277.51	404.12	383.78	408.06	3891.64	3453.41	340.81	395.92	3672.53	1.26	1.61	15.22	3.21	2.68	Matched[2679]
YHR137C-A		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps verified gene ARO9/YHR137W; identified by gene-trapping, expression analysis, and genome-wide homology searching"	Dubious	chr8:375741-376391	375741-376391	98.8%	208.38	360.79	297.03	353.01	2656.13	2834.96	284.58	325.02	2745.55	1.05	1.32	11.38	3.08	NaN	Covered/w/another[2679]
YHR138C		Putative protein of unknown function; has similarity to Pbi2p; double null mutant lacking Pbi2p and Yhr138p exhibits highly fragmented vacuoles	Uncharacterized	chr8:377358-377702	377358-377702	99.3%	169.24	157.57	177.99	137.14	1170.09	496.05	163.40	157.57	833.07	0.60	0.64	3.45	2.40	1.86	Matched[2680]
YHR139C	SPS100	Protein required for spore wall maturation; expressed during sporulation; may be a component of the spore wall	Verified	chr8:378222-379202	378222-379202	98.6%	17.57	34.10	9.30	15.50	69.24	66.14	25.84	12.40	67.69	0.10	0.05	0.28	2.45	1.81	Covered/w/another[2681]
YHR139C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:380111-380422	380111-380422	99.1%	9.70	12.94	16.17	35.57	100.26	64.68	11.32	25.87	82.47	0.04	0.11	0.34	1.67	1.46	Covered/w/another[2681]
YHR140W		Putative integral membrane protein of unknown function	Uncharacterized	chr8:380575-381294	380575-381294	99.1%	40.66	61.69	58.89	44.87	259.39	172.46	51.18	51.88	215.93	0.19	0.21	0.89	2.06	2.37	Matched[2682]
YHR141C	RPL42B	"Protein component of the large (60S) ribosomal subunit, identical to Rpl42Ap and has similarity to rat L44; required for propagation of the killer toxin-encoding M1 double-stranded RNA satellite of the L-A double-stranded RNA virus"	Verified	chr8:381993-382754	381993-382309,382751-382754	30.9%	7892.35	6015.14	7095.04	5591.25	1735.91	1634.99	6953.74	6343.15	1685.45	25.67	25.75	6.98	-1.91	-4.04	Matched[2684]
YHR142W	CHS7	"Protein of unknown function, involved in chitin biosynthesis by regulating Chs3p export from the ER"	Verified	chr8:383541-384491	383541-384491	99.0%	351.54	333.48	335.60	268.70	204.97	156.12	342.51	302.15	180.55	1.26	1.23	0.75	-0.74	-0.47	Matched[2685]
YHR143W	DSE2	"Daughter cell-specific secreted protein with similarity to glucanases, degrades cell wall from the daughter side causing daughter to separate from mother; expression is repressed by cAMP"	Verified	chr8:385513-386490	385513-386490	99.4%	1459.22	1525.08	1340.88	1172.11	599.95	482.63	1492.15	1256.50	541.29	5.51	5.10	2.24	-1.21	-0.57	Frag>80[2687,2688,2689]
YHR143W-A	RPC10	"RNA polymerase subunit, found in RNA polymerase complexes I, II, and III"	Verified	chr8:387236-387448	387236-387448	98.5%	852.89	552.71	762.36	609.89	262.06	214.41	702.80	686.12	238.24	2.59	2.79	0.99	-1.53	-1.98	Matched[2690]
YHR144C	DCD1	Deoxycytidine monophosphate (dCMP) deaminase required for dCTP and dTTP synthesis; expression is NOT cell cycle regulated	Verified	chr8:387791-388729	387791-388729	99.3%	152.33	129.81	141.61	102.99	47.20	36.47	141.07	122.30	41.84	0.52	0.50	0.17	-1.55	-1.40	Matched[2691]
YHR145C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:388984-389340	388984-389340	53.1%	0.00	5.27	0.00	0.00	0.00	5.27	2.64	0.00	2.64	0.01	0.00	0.01	Inf	0.38	
YHR146W	CRP1	Protein that binds to cruciform DNA structures	Verified	chr8:390303-391700	390303-391700	98.3%	713.38	842.22	599.09	541.58	773.07	805.10	777.80	570.34	789.08	2.87	2.32	3.27	0.47	1.09	Matched[2692]
YHR147C	MRPL6	Mitochondrial ribosomal protein of the large subunit	Verified	chr8:392642-393286	392642-393286	99.0%	342.86	347.55	411.74	382.00	515.07	327.20	345.21	396.87	421.14	1.27	1.61	1.74	0.09	-0.33	Matched[2695]
YHR148W	IMP3	"Component of the SSU processome, which is required for pre-18S rRNA processing, essential protein that interacts with Mpp10p and mediates interactions of Imp4p and Mpp10p with U3 snoRNA"	Verified	chr8:393537-394088	393537-394088	98.9%	139.15	87.89	95.21	71.41	7.32	10.99	113.52	83.31	9.15	0.42	0.34	0.04	-3.19	-3.76	Covered/w/another[2696]
YHR149C	SKG6	Integral membrane protein that localizes primarily to growing sites such as the bud tip or the cell periphery; potential Cdc28p substrate; Skg6p interacts with Zds1p and Zds2p	Verified	chr8:394458-396662	394458-396662	99.0%	160.76	139.23	115.87	88.85	17.40	21.53	149.99	102.36	19.46	0.55	0.42	0.08	-2.39	-1.95	Covered/w/another[2696]
YHR150W	PEX28	"Peroxisomal integral membrane peroxin, involved in the regulation of peroxisomal size, number and distribution; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p"	Verified	chr8:397254-398993	397254-398993	98.8%	68.67	58.19	55.87	54.70	60.52	41.32	63.43	55.28	50.92	0.23	0.22	0.21	-0.12	0.23	Covered/w/another[2697]
YHR151C		Putative protein of unknown function	Uncharacterized	chr8:399271-400851	399271-400851	98.9%	67.13	95.91	74.17	54.99	70.33	53.71	81.52	64.58	62.02	0.30	0.26	0.26	-0.06	0.03	Covered/w/another[2697]
YHR152W	SPO12	"Nucleolar protein of unknown function, positive regulator of exit from mitosis; involved in regulating the release of Cdc14p from the nucleolus in early anaphase; proposed to play similar role in meiosis"	Verified	chr8:401437-401958	401437-401958	98.6%	412.02	474.21	400.36	464.49	757.96	464.49	443.11	432.42	611.22	1.64	1.76	2.53	0.50	0.55	Matched[2698]
YHR153C	SPO16	"Protein of unknown function, required for spore formation"	Verified	chr8:402089-402685	402089-402685	99.3%	42.17	52.29	37.11	32.05	32.05	21.93	47.23	34.58	26.99	0.17	0.14	0.11	-0.36	-0.95	Matched[2699]
YHR154W	RTT107	"Protein implicated in Mms22-dependent DNA repair during S phase, DNA damage induces phosphorylation by Mec1p at one or more SQ/TQ motifs; interacts with Mms22p and Slx4p; has four BRCT domains; has a role in regulation of Ty1 transposition"	Verified	chr8:402969-406181	402969-406181	98.9%	199.27	156.46	150.48	116.48	41.87	25.81	177.87	133.48	33.84	0.66	0.54	0.14	-1.98	-1.40	Matched[2700]
YHR155W	YSP1	Mitochondrial protein with a potential role in promoting mitochondrial fragmentation during programmed cell death in response to high levels of alpha-factor mating pheromone or the drug amiodarone	Verified	chr8:407106-410792	407106-410792	99.0%	81.12	73.45	56.46	52.34	59.20	61.66	77.28	54.40	60.43	0.29	0.22	0.25	0.15	0.70	Covered/w/another[2702]
YHR156C	LIN1	"Non-essential component of U5 snRNP; nuclear protein; physically interacts with Irr1p of cohesin complex; may link together proteins involved in chromosome segregation, mRNA splicing and DNA replication"	Verified	chr8:411387-412409	411387-412409	99.5%	52.04	50.08	35.35	49.10	121.76	89.36	51.06	42.22	105.56	0.19	0.17	0.44	1.32	1.42	Covered/w/another[2702]
YHR157W	REC104	Protein involved in early stages of meiotic recombination; required for meiotic crossing over; forms a complex with Rec102p and Spo11p necessary during the initiation of recombination	Verified	chr8:412910-413458	412910-413458	98.8%	12.90	7.37	9.21	9.21	36.86	23.96	10.14	9.21	30.41	0.04	0.04	0.13	1.72	0.39	Covered/w/another[2702]
YHR158C	KEL1	"Protein required for proper cell fusion and cell morphology; functions in a complex with Kel2p to negatively regulate mitotic exit, interacts with Tem1p and Lte1p; localizes to regions of polarized growth; potential Cdc28p substrate"	Verified	chr8:413688-417182	413688-417182	99.1%	162.34	157.43	152.80	139.52	105.72	132.87	159.88	146.16	119.30	0.59	0.59	0.49	-0.29	0.26	Matched[2703]
YHR159W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; potential Cdc28p substrate	Uncharacterized	chr8:417552-419066	417552-419066	98.5%	63.00	66.35	56.97	63.00	107.23	93.16	64.67	59.98	100.20	0.24	0.24	0.42	0.74	0.95	Matched[2704]
YHR160C	PEX18	Peroxin required for targeting of peroxisomal matrix proteins containing PTS2; interacts with Pex7p; partially redundant with Pex21p	Verified	chr8:419224-420075	419224-420075	99.4%	46.07	50.80	34.26	22.45	79.15	54.34	48.43	28.35	66.75	0.18	0.12	0.28	1.24	2.26	Matched[2705]
YHR161C	YAP1801	"Protein involved in clathrin cage assembly; binds Pan1p and clathrin; homologous to Yap1802p, member of the AP180 protein family"	Verified	chr8:420376-422289	420376-422289	97.7%	170.51	204.19	189.22	179.06	491.76	343.16	187.35	184.14	417.46	0.69	0.75	1.73	1.18	1.59	Frag>80[2706,2707]
YHR162W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the mitochondrion	Uncharacterized	chr8:423075-423464	423075-423464	98.5%	2090.47	2551.25	2199.80	1931.66	3852.91	1910.84	2320.86	2065.73	2881.87	8.57	8.39	11.94	0.48	-0.57	Matched[2708]
YHR163W	SOL3	"6-phosphogluconolactonase, catalyzes the second step of the pentose phosphate pathway; weak multicopy suppressor of los1-1 mutation; homologous to Sol2p and Sol1p"	Verified	chr8:423726-424475	423726-424475	98.7%	517.31	482.19	517.31	428.16	783.39	653.72	499.75	472.73	718.55	1.84	1.92	2.98	0.60	0.57	Matched[2709]
YHR164C	DNA2	"Essential tripartite DNA replication factor with single-stranded DNA-dependent ATPase, ATP-dependent nuclease, and helicase activities; required for Okazaki fragment processing; involved in DNA repair pathways; potential Cdc28p substrate"	Verified	chr8:424612-429180	424612-429180	99.2%	47.43	54.05	39.93	31.11	50.74	48.09	50.74	35.52	49.42	0.19	0.14	0.20	0.48	0.39	Matched[2710]
YHR165W-A		"Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:436649-436960	436649-436960	98.4%	32.59	65.17	42.36	39.10	48.88	87.98	48.88	40.73	68.43	0.18	0.17	0.28	0.75	NaN	Covered/w/another[2711]
YHR165C	PRP8	"Component of the U4/U6-U5 snRNP complex, involved in the second catalytic step of splicing; mutations of human Prp8 cause retinitis pigmentosa"	Verified	chr8:429709-436950	429709-436950	99.1%	93.91	91.68	79.42	72.87	48.49	78.59	92.80	76.15	63.54	0.34	0.31	0.26	-0.26	-0.06	Covered/w/another[2711]
YHR166C	CDC23	"Subunit of the anaphase-promoting complex/cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition"	Verified	chr8:437172-439052	437172-439052	99.3%	54.62	65.33	41.77	44.45	53.55	28.38	59.98	43.11	40.97	0.22	0.17	0.17	-0.07	-0.11	Covered/w/another[2711]
YHR167W	THP2	"Subunit of the THO complex, which connects transcription elongation and mitotic recombination, and of the TREX complex, which is recruited to activated genes and couples transcription to mRNA export; involved in telomere maintenance"	Verified	chr8:439344-440129	439344-440129	98.7%	107.03	110.90	92.84	69.63	92.84	54.16	108.96	81.24	73.50	0.40	0.33	0.30	-0.14	-1.22	Covered/w/another[2712]
YHR168W	MTG2	"Putative GTPase, member of the Obg family; peripheral protein of the mitochondrial inner membrane that associates with the large ribosomal subunit; required for mitochondrial translation, possibly via a role in ribosome assembly"	Verified	chr8:440379-441878	440379-441878	98.4%	48.10	66.39	69.78	55.55	69.78	44.03	57.24	62.66	56.90	0.21	0.25	0.24	-0.14	0.40	Covered/w/another[2712]
YHR169W	DBP8	Putative ATP-dependent RNA helicase of the DEAD-box family involved in biogenesis of the 40S ribosomal subunit	Verified	chr8:442182-443477	442182-443477	98.4%	136.42	81.54	55.66	48.61	19.60	11.76	108.98	52.14	15.68	0.40	0.21	0.06	-1.73	-0.20	Matched[2713]
YHR170W	NMD3	Protein involved in nuclear export of the large ribosomal subunit; acts as a Crm1p-dependent adapter protein for export of nascent ribosomal subunits through the nuclear pore complex	Verified	chr8:443829-445385	443829-445385	98.7%	389.59	184.07	232.20	184.72	24.07	5.85	286.83	208.46	14.96	1.06	0.85	0.06	-3.80	-4.38	Matched[2714]
YHR171W	ATG7	"Autophagy-related protein and dual specificity member of the E1 family of ubiquitin-activating enzymes; mediates the conjugation of Atg12p with Atg5p and Atg8p with phosphatidylethanolamine, required steps in autophagosome formation"	Verified	chr8:445713-447605	445713-447605	98.9%	40.59	41.13	55.55	50.21	133.00	91.87	40.86	52.88	112.43	0.15	0.21	0.47	1.09	1.45	Frag>80[2715,2716]
YHR172W	SPC97	Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex; interacts with Spc110p at the spindle pole body (SPB) inner plaque and with Spc72p at the SPB outer plaque	Verified	chr8:448335-450806	448335-450806	98.9%	63.82	60.96	51.96	42.55	40.09	28.64	62.39	47.25	34.36	0.23	0.19	0.14	-0.46	-0.06	Matched[2717]
YHR173C		"Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:450815-451153	450815-451153	99.3%	139.57	65.33	115.81	98.00	65.33	44.54	102.45	106.90	54.94	0.38	0.43	0.23	-0.96	0.20	Covered/w/another[2717]
YHR174W	ENO2	"Enolase II, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression is induced in response to glucose"	Verified	chr8:451327-452640	451327-452640	43.0%	44340.21	40917.45	42035.38	37383.25	32140.33	28758.25	42628.83	39709.32	30449.29	157.36	161.19	126.16	-0.38	-1.36	Matched[2718]
YHR175W	CTR2	"Putative low-affinity copper transporter of the vacuolar membrane; mutation confers resistance to toxic copper concentrations, while overexpression confers resistance to copper starvation"	Verified	chr8:452872-453441	452872-453441	98.8%	374.67	305.42	399.53	324.95	257.47	163.36	340.04	362.24	210.42	1.26	1.47	0.87	-0.78	-0.94	Matched[2719]
YHR175W-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr8:453558-453707	453558-453707	99.7%	207.30	167.18	227.36	180.55	140.43	53.50	187.24	203.96	96.96	0.69	0.83	0.40	-1.07	NaN	Matched[2719]
YHR176W	FMO1	"Flavin-containing monooxygenase, localized to the cytoplasmic face of the ER membrane; catalyzes oxidation of biological thiols to maintain the ER redox buffer ratio for correct folding of disulfide-bonded proteins"	Verified	chr8:454229-455527	454229-455527	98.7%	50.71	49.93	50.71	46.02	73.33	42.90	50.32	48.37	58.12	0.19	0.20	0.24	0.26	0.18	Frag>80[2720,2721]
YHR177W		Putative protein of unknown function	Uncharacterized	chr8:456591-457952	456591-457952	98.9%	35.62	28.20	34.14	34.88	34.88	49.72	31.91	34.51	42.30	0.12	0.14	0.18	0.29	1.36	Covered[2722]
YHR178W	STB5	"Activator of multidrug resistance genes, forms a heterodimer with Pdr1p; contains a Zn(II)2Cys6 zinc finger domain that interacts with a PDRE (pleotropic drug resistance element) in vitro; binds Sin3p in a two-hybrid assay"	Verified	chr8:459299-461530	459299-461530	98.8%	55.35	53.08	44.91	40.83	71.68	49.90	54.21	42.87	60.79	0.20	0.17	0.25	0.50	0.85	Matched[2723]
YHR179W	OYE2	"Widely conserved NADPH oxidoreductase containing flavin mononucleotide (FMN), homologous to Oye3p with slight differences in ligand binding and catalytic properties; may be involved in sterol metabolism"	Verified	chr8:462502-463704	462502-463704	98.6%	1492.94	1850.57	1497.15	1347.86	1697.05	1600.90	1671.75	1422.51	1648.98	6.17	5.77	6.83	0.21	0.46	Matched[2724]
YHR180W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr8:465178-465669	465178-465669	97.0%	58.68	64.97	48.21	37.73	123.66	64.97	61.83	42.97	94.31	0.23	0.17	0.39	1.13	0.15	Covered[2725]
YHR180W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps dubious ORF YHR180C-B and long terminal repeat YHRCsigma3"	Dubious	chr8:466932-467114	466932-467114	74.0%	7.38	0.00	0.00	7.38	0.00	0.00	3.69	3.69	0.00	0.01	0.01	0.00	-Inf	NaN	
YHR180C-B		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the dubious ORF YHR180W-A"	Dubious	chr8:466958-467062	466958-467062	68.5%	0.00	0.00	0.00	13.90	0.00	0.00	0.00	6.95	0.00	0.00	0.03	0.00	-Inf	NaN	
YHR181W	SVP26	"Integral membrane protein of the early Golgi apparatus and endoplasmic reticulum, involved in COP II vesicle transport; may also function to promote retention of proteins in the early Golgi compartment"	Verified	chr8:467228-467914	467228-467914	99.2%	397.60	407.87	349.19	328.65	338.92	239.15	402.74	338.92	289.03	1.49	1.38	1.20	-0.23	-0.19	Matched[2726]
YHR182W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and cytoplasm	Uncharacterized	chr8:468219-470576	468219-470576	98.8%	61.80	48.50	48.93	37.77	38.20	30.47	55.15	43.35	34.34	0.20	0.18	0.14	-0.34	0.34	Matched[2727]
YHR183W	GND1	"6-phosphogluconate dehydrogenase (decarboxylating), catalyzes an NADPH regenerating reaction in the pentose phosphate pathway; required for growth on D-glucono-delta-lactone and adaptation to oxidative stress"	Verified	chr8:470960-472429	470960-472429	98.4%	2724.11	2740.70	2576.19	2238.18	1412.17	1283.60	2732.41	2407.19	1347.89	10.09	9.77	5.58	-0.84	-0.81	Matched[2728]
YHR182C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:470939-471412	470939-471412	98.8%	1587.32	1783.87	1651.42	1595.87	764.82	905.82	1685.60	1623.64	835.32	6.22	6.59	3.46	-0.96	NaN	Covered/w/another[2728]
YHR184W	SSP1	Protein involved in the control of meiotic nuclear division and coordination of meiosis with spore formation; transcription is induced midway through meiosis	Verified	chr8:472744-474459	472744-474459	98.8%	13.57	6.49	16.52	14.16	10.62	11.80	10.03	15.34	11.21	0.04	0.06	0.05	-0.45	-0.49	Frag<80[2729]
YHR185C	PFS1	"Sporulation protein required for prospore membrane formation at selected spindle poles, ensures functionality of all four spindle pole bodies during meiosis II; not required for meiotic recombination or meiotic chromosome segregation"	Verified	chr8:474627-475340	474627-475340	99.3%	4.23	9.88	4.23	8.47	5.64	15.52	7.06	6.35	10.58	0.03	0.03	0.04	0.74	-0.62	
YHR186C	KOG1	"Subunit of TORC1, a rapamycin-sensitive complex involved in growth control that contains Tor1p or Tor2p, Lst8p and Tco89p; contains four HEAT repeats and seven WD-40 repeats; may act as a scaffold protein to couple TOR and its effectors"	Verified	chr8:475999-480672	475999-480672	99.0%	99.58	82.73	80.79	69.55	35.64	48.39	91.16	75.17	42.01	0.34	0.31	0.17	-0.84	-0.11	Matched[2730]
YHR187W	IKI1	"Subunit of Elongator complex, which is required for modification of wobble nucleosides in tRNA; iki1 mutations confer resistance to the K. lactis toxin zymocin"	Verified	chr8:480990-481919	480990-481919	98.7%	139.38	80.58	116.52	105.63	35.93	37.02	109.98	111.07	36.48	0.41	0.45	0.15	-1.61	-0.66	Matched[2731]
YHR188C	GPI16	Transmembrane protein subunit of the glycosylphosphatidylinositol transamidase complex that adds GPIs to newly synthesized proteins; human PIG-Tp homolog	Verified	chr8:482005-483837	482005-483837	98.6%	344.53	388.77	394.86	376.05	311.90	332.92	366.65	385.46	322.41	1.35	1.56	1.34	-0.26	0.22	Matched[2732]
YHR189W	PTH1	One of two (see also PTH2) mitochondrially-localized peptidyl-tRNA hydrolases; dispensable for cell growth and for mitochondrial respiration	Verified	chr8:484028-484600	484028-484600	98.2%	78.23	78.23	64.00	58.67	90.67	72.89	78.23	61.34	81.78	0.29	0.25	0.34	0.42	1.16	Matched[2733]
YHR190W	ERG9	"Farnesyl-diphosphate farnesyl transferase (squalene synthase), joins two farnesyl pyrophosphate moieties to form squalene in the sterol biosynthesis pathway"	Verified	chr8:484845-486179	484845-486179	98.9%	631.80	720.43	604.53	616.65	849.97	613.62	676.12	610.59	731.80	2.50	2.48	3.03	0.26	0.38	Matched[2734]
YHR191C	CTF8	Subunit of a complex with Ctf18p that shares some subunits with Replication Factor C and is required for sister chromatid cohesion	Verified	chr8:486230-486631	486230-486631	99.4%	112.58	125.09	112.58	140.10	245.18	135.10	118.84	126.34	190.14	0.44	0.51	0.79	0.59	0.08	Matched[2735]
YHR192W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and is induced in response to the DNA-damaging agent MMS	Uncharacterized	chr8:486826-487662	486826-487662	98.7%	199.77	194.93	176.76	171.92	233.67	144.08	197.35	174.34	188.87	0.73	0.71	0.78	0.12	-0.11	Matched[2736]
YHR193C	EGD2	"Alpha subunit of the heteromeric nascent polypeptide-associated complex (NAC) involved in protein sorting and translocation, associated with cytoplasmic ribosomes"	Verified	chr8:487712-488236	487712-488236	98.9%	4115.61	3739.88	4050.10	3466.28	2591.52	1967.24	3927.75	3758.19	2279.38	14.50	15.26	9.44	-0.72	-1.32	Matched[2737]
YHR194W	MDM31	"Mitochondrial inner membrane protein with similarity to Mdm32p, required for normal mitochondrial morphology and inheritance; interacts genetically with MMM1, MDM10, MDM12, and MDM34"	Verified	chr8:488657-490396	488657-490396	98.6%	86.25	118.30	100.82	100.24	129.37	108.98	102.28	100.53	119.18	0.38	0.41	0.49	0.25	0.80	Matched[2738]
YHR193C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps verified ORF MDM31"	Dubious	chr8:488653-489027	488653-489027	98.9%	62.01	75.49	80.88	80.88	78.18	56.62	68.75	80.88	67.40	0.25	0.33	0.28	-0.26	NaN	Covered/w/another[2738]
YHR195W	NVJ1	Nuclear envelope protein that interacts with the vacuolar membrane protein Vac8p to promote formation of nucleus-vacuole junctions during piecemeal microautophagy of the nucleus (PMN)	Verified	chr8:490747-491712	490747-491712	98.4%	164.16	208.36	169.42	188.36	421.98	337.79	186.26	178.89	379.88	0.69	0.73	1.57	1.09	1.20	Frag>80[2739,2740]
YHR196W	UTP9	"Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA"	Verified	chr8:491931-493658	491931-493658	98.7%	293.05	215.10	167.04	132.46	22.86	7.03	254.07	149.75	14.95	0.94	0.61	0.06	-3.32	-3.95	Matched[2741]
YHR197W	RIX1	"Essential component of the Rix1 complex (Rix1p, Ipi1p, Ipi3p) that is required for processing of ITS2 sequences from 35S pre-rRNA; Rix1 complex associates with Mdn1p in pre-60S ribosomal particles"	Verified	chr8:493896-496187	493896-496187	98.9%	144.19	60.85	69.23	56.00	10.14	2.20	102.52	62.61	6.17	0.38	0.25	0.03	-3.34	-2.53	Matched[2742]
YHR198C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr8:496315-497280	496315-497280	99.0%	100.42	141.21	155.86	162.13	353.56	214.44	120.82	159.00	284.00	0.45	0.65	1.18	0.84	0.83	Frag>80[2743,2744,2745]
YHR199C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr8:497490-498422	497490-498422	98.7%	221.42	301.74	261.58	211.65	531.84	412.45	261.58	236.61	472.14	0.97	0.96	1.96	1.00	1.11	Frag>80[2745,2746]
YHR199C-A		Putative protein of unknown function; transcribed sequence appears to contain an intron	Uncharacterized	chr8:498571-498859	498571-498719,498787-498859	98.6%	54.82	95.93	73.09	63.95	173.58	41.11	75.37	68.52	107.35	0.28	0.28	0.44	0.65	NaN	Covered[2746]
YHR200W	RPN10	Non-ATPase base subunit of the 19S regulatory particle (RP) of the 26S proteasome; N-terminus plays a role in maintaining the structural integrity of the RP; binds selectively to polyubiquitin chains; homolog of the mammalian S5a protein	Verified	chr8:499079-499885	499079-499885	98.4%	531.65	530.39	564.41	507.72	821.42	532.91	531.02	536.06	677.17	1.96	2.18	2.81	0.34	0.39	Covered/w/another[2747]
YHR201C	PPX1	"Exopolyphosphatase, hydrolyzes inorganic polyphosphate (poly P) into Pi residues; located in the cytosol, plasma membrane, and mitochondrial matrix"	Verified	chr8:499950-501143	499950-501143	99.3%	363.47	321.30	317.09	260.59	258.90	185.53	342.39	288.84	222.21	1.26	1.17	0.92	-0.38	-0.31	Covered/w/another[2747]
YHR202W		"Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the vacuole, while HA-tagged protein is found in the soluble fraction, suggesting cytoplasmic localization"	Uncharacterized	chr8:502388-504196	502388-504196	98.9%	55.92	102.33	75.49	81.64	104.57	92.83	79.13	78.57	98.70	0.29	0.32	0.41	0.33	0.61	Matched[2748]
YHR203C	RPS4B	Protein component of the small (40S) ribosomal subunit; identical to Rps4Ap and has similarity to rat S4 ribosomal protein	Verified	chr8:504476-505530	504476-505247,505517-505530	24.6%	5280.41	4389.99	4861.09	4400.35	1232.10	1206.21	4835.20	4630.72	1219.15	17.85	18.80	5.05	-1.93	-1.92	Frag>80[2749,2750]
YHR204W	MNL1	Alpha mannosidase-like protein of the endoplasmic reticulum required for degradation of glycoproteins but not for processing of N-linked oligosaccharides	Verified	chr8:506319-508709	506319-508709	98.9%	134.01	138.66	112.03	90.89	49.46	32.55	136.34	101.46	41.01	0.50	0.41	0.17	-1.31	-0.99	Covered/w/another[2751]
YHR205W	SCH9	"Protein kinase involved in transcriptional activation of osmostress-responsive genes; regulates G1 progression, cAPK activity, nitrogen activation of the FGM pathway; involved in life span regulation; homologous to mammalian Akt/PKB"	Verified	chr8:509363-511837	509363-511837	98.8%	215.55	204.50	204.50	177.10	121.88	157.06	210.02	190.80	139.47	0.78	0.77	0.58	-0.45	0.37	Covered/w/another[2751]
YHR206W	SKN7	"Nuclear response regulator and transcription factor, part of a branched two-component signaling system; required for optimal induction of heat-shock genes in response to oxidative stress; involved in osmoregulation"	Verified	chr8:512732-514600	512732-514600	99.0%	161.13	123.28	138.96	112.47	77.32	75.16	142.20	125.71	76.24	0.52	0.51	0.32	-0.72	-0.05	Matched[2752]
YHR207C	SET5	"Zinc-finger protein of unknown function, contains one canonical and two unusual fingers in unusual arrangements; deletion enhances replication of positive-strand RNA virus"	Verified	chr8:514905-516485	514905-516485	99.3%	138.19	164.93	122.27	140.10	192.32	149.65	151.56	131.18	170.98	0.56	0.53	0.71	0.38	0.25	Covered[2753]
YHR208W	BAT1	"Mitochondrial branched-chain amino acid aminotransferase, homolog of murine ECA39; highly expressed during logarithmic phase and repressed during stationary phase"	Verified	chr8:517532-518713	517532-518713	98.9%	1794.10	2109.80	1505.78	1401.40	329.39	230.14	1951.95	1453.59	279.77	7.21	5.90	1.16	-2.38	-2.37	Matched[2754]
YHR209W		Putative S-adenosylmethionine-dependent methyltransferase; mediates cantharidin resistance	Uncharacterized	chr8:519437-520312	519437-520312	98.8%	91.30	91.30	98.23	77.43	389.46	240.38	91.30	87.83	314.92	0.34	0.36	1.30	1.84	2.04	Matched[2755]
YHR210C		Putative protein of unknown function; non-essential gene; highly expressed under anaeorbic conditions; sequence similarity to aldose 1-epimerases such as GAL10	Uncharacterized	chr8:520712-521737	520712-521737	98.9%	18.72	29.56	29.56	26.60	24.63	19.71	24.14	28.08	22.17	0.09	0.11	0.09	-0.34	-0.17	Matched[2756]
YHR211W	FLO5	"Lectin-like cell wall protein (flocculin) involved in flocculation, binds to mannose chains on the surface of other cells, confers floc-forming ability that is chymotrypsin resistant but heat labile; similar to Flo1p"	Verified	chr8:525392-528619	525392-528619	20.9%	59.24	56.28	35.54	37.03	41.47	38.51	57.76	36.29	39.99	0.21	0.15	0.17	0.14	0.49	Overlap[2757]
YHR212C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:537759-538094	537759-538094	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.65	
YHR212W-A		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr8:538742-538945	538742-538945	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YHR213W		Putative protein of unknown function	Uncharacterized	chr8:539151-539747	539151-539747	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.55	
YHR213W-A		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr8:540549-540782	540549-540782	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YHR213W-B		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr8:540800-541099	540800-541099	3.9%	0.00	0.00	0.00	0.00	0.00	85.41	0.00	0.00	42.70	0.00	0.00	0.18	Inf	NaN	
YHR214W		Putative protein of unknown function; predicted to be a glycosylphosphatidylinositol-modified (GPI) protein	Uncharacterized	chr8:541651-542262	541651-542262	0.7%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.04	
YHR214W-A		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data; similar to the fungal specific protein encoded by YAR068W; induced by zinc deficiency"	Dubious	chr8:543008-543493	543008-543493	1.2%	0.00	170.21	0.00	170.21	0.00	0.00	85.11	85.11	0.00	0.31	0.35	0.00	-Inf	-0.13	
YHR214C-D		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr8:550648-550941	550648-550941	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YHR214C-E		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr8:551200-551499	551200-551499	13.0%	0.00	25.64	0.00	0.00	51.28	25.64	12.82	0.00	38.46	0.05	0.00	0.16	Inf	NaN	
YHR215W	PHO12	"One of three repressible acid phosphatases, a glycoprotein that is transported to the cell surface by the secretory pathway; nearly identical to Pho11p; upregulated by phosphate starvation"	Verified	chr8:552099-553502	552099-553502	3.1%	614.80	432.64	683.11	387.10	45.54	68.31	523.72	535.10	56.93	1.93	2.17	0.24	-3.23	-1.88	Frag<80[2760]
YHR216W	IMD2	"Inosine monophosphate dehydrogenase, catalyzes the first step of GMP biosynthesis, expression is induced by mycophenolic acid resulting in resistance to the drug, expression is repressed by nutrient limitation"	Verified	chr8:554396-555967	554396-555967	24.7%	1359.12	1709.86	1297.23	1194.07	268.21	172.79	1534.49	1245.65	220.50	5.66	5.06	0.91	-2.50	-1.96	Frag<80[2761,2762,2763,2764,2765]
YHR217C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; located in the telomeric region TEL08R."	Dubious	chr8:556581-557042	556581-557042	23.7%	0.00	9.14	0.00	0.00	0.00	0.00	4.57	0.00	0.00	0.02	0.00	0.00	NaN	-0.23	
YHR218W		Helicase-like protein encoded within the telomeric Y' element	Uncharacterized	chr8:558014-559924	558014-558615,558715-559924	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.39	
YHR218W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr8:559932-560249	559932-560249	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YHR219W		Putative protein of unknown function with similarity to helicases; located in the telomere region on the right arm of chromosome VIII	Uncharacterized	chr8:560173-562047	560173-562047	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.28	
YHR219C-A		"Dubious open reading frame unlikely to encode a functional protein; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr8:561199-561681	561199-561681	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YIL177W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the uncharacterized gene YIL177C"	Dubious	chr9:846-1328	846-1328	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YIL177C		Putative protein of unknown function; similarity to DNA helicases that are encoded within subtelomeric Y' elements and induced in telomerase deficient survivors	Uncharacterized	chr9:483-6147	483-4598,4987-6147	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.24	
YIL176C		Hypothetical protein	Uncharacterized	chr9:8793-9155	8793-9155	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.67	
YIL173W	VTH1	"Putative membrane glycoprotein with strong similarity to Vth2p and Pep1p/Vps10p, may be involved in vacuolar protein sorting"	Verified	chr9:11492-16141	11492-16141	0.1%	252.63	0.00	0.00	252.63	0.00	0.00	126.32	126.32	0.00	0.47	0.51	0.00	-Inf	0.23	
YIL171W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:18260-18712	18260-18712	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YIL172C		Putative protein of unknown function with similarity to glucosidases; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr9:16784-18553	16784-18553	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.33	
YIL169C		"Putative protein of unknown function; serine/threonine rich and highly similar to YOL155C, a putative glucan alpha-1,4-glucosidase; transcript is induced in both high and low pH environments; YIL169C is a non-essential gene"	Uncharacterized	chr9:23119-26106	23119-26106	62.9%	337.36	378.87	263.93	328.32	101.10	222.42	358.11	296.12	161.76	1.32	1.20	0.67	-0.87	0.62	Frag<80[2768,2769]
YIL166C		Putative protein with similarity to the allantoate permease (Dal5p) subfamily of the major facilitator superfamily; mRNA expression is elevated by sulfur limitation; YIL166C is a non-essential gene	Uncharacterized	chr9:30938-32566	30938-32566	99.0%	31.63	38.45	28.53	24.19	65.74	50.24	35.04	26.36	57.99	0.13	0.11	0.24	1.14	0.77	Covered[2771]
YIL165C		"Putative protein of unknown function; in closely related species and other S. cerevisiae strain backgrounds YIL165C and adjacent ORF, YIL164C, likely constitute a single ORF encoding a nitrilase gene"	Uncharacterized	chr9:33718-34077	33718-34077	99.1%	81.28	137.34	89.69	95.29	126.12	95.29	109.31	92.49	110.71	0.40	0.38	0.46	0.26	0.30	Covered/w/another[2772]
YIL164C	NIT1	"Nitrilase, member of the nitrilase branch of the nitrilase superfamily; in closely related species and other S. cerevisiae strain backgrounds YIL164C and adjacent ORF, YIL165C, likely constitute a single ORF encoding a nitrilase gene"	Verified	chr9:34087-34686	34087-34686	98.8%	70.87	96.18	84.36	55.68	101.24	43.87	83.52	70.02	72.55	0.31	0.28	0.30	0.05	0.32	Covered/w/another[2772]
YIL163C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:36899-37252	36899-37252	98.8%	65.75	34.30	22.87	14.29	31.44	17.15	50.02	18.58	24.30	0.18	0.08	0.10	0.39	-0.08	Covered/w/another[2772]
YIL162W	SUC2	"Invertase, sucrose hydrolyzing enzyme; a secreted, glycosylated form is regulated by glucose repression, and an intracellular, nonglycosylated enzyme is produced constitutively"	Verified	chr9:37385-38983	37385-38983	99.0%	184.51	133.96	319.10	462.53	150.39	140.28	159.23	390.82	145.33	0.59	1.59	0.60	-1.43	-1.00	Matched[2773]
YIL161W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; mRNA is enriched in Scp160p-associated mRNPs; YIL161W is a non-essential gene	Uncharacterized	chr9:39433-40140	39433-40140	98.3%	192.47	192.47	132.14	143.64	209.71	142.20	192.47	137.89	175.95	0.71	0.56	0.73	0.35	0.24	Matched[2774]
YIL160C	POT1	"3-ketoacyl-CoA thiolase with broad chain length specificity, cleaves 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA during beta-oxidation of fatty acids"	Verified	chr9:40191-41444	40191-41444	99.0%	26.58	28.19	25.78	16.92	76.52	45.11	27.39	21.35	60.81	0.10	0.09	0.25	1.51	1.89	Matched[2775]
YIL159W	BNR1	"Formin, nucleates the formation of linear actin filaments, involved in cell processes such as budding and mitotic spindle orientation which require the formation of polarized actin cables, functionally redundant with BNI1"	Verified	chr9:41825-45952	41825-45952	98.9%	48.25	33.80	34.29	29.63	16.65	13.96	41.02	31.96	15.31	0.15	0.13	0.06	-1.06	-0.55	Frag<80[2776,2777]
YIL158W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the vacuole	Uncharacterized	chr9:46201-46815	46201-46815	98.4%	348.66	277.61	269.35	232.99	107.41	36.35	313.14	251.17	71.88	1.16	1.02	0.30	-1.80	-1.07	Matched[2778]
YIL156W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:47292-47693	47292-47693	98.7%	199.16	204.20	214.29	234.45	496.64	302.52	201.68	224.37	399.58	0.74	0.91	1.66	0.83	NaN	Matched[2779]
YIL157C	COA1	Protein required for assembly of the cytochrome c oxidase complex (complex IV of the mitochondrial respiratory chain); probable mitochondrial inner membrane protein; interacts with COX1 regulatory proteins MSS1 and COX14	Uncharacterized	chr9:46949-47542	46949-47542	98.9%	362.40	389.62	360.70	394.73	797.96	464.48	376.01	377.71	631.22	1.39	1.53	2.62	0.74	1.18	Matched[2779]
YIL156W-B		"Putative protein of unknown function, originally identified based on homology to <i>Ashbya gossypii</i> and other related yeasts"	Uncharacterized	chr9:47690-47973	47690-47698,47761-47973	98.7%	333.08	323.95	351.33	360.46	825.86	451.71	328.52	355.89	638.78	1.21	1.44	2.65	0.84	NaN	Matched[2780]
YIL156W	UBP7	Ubiquitin-specific protease that cleaves ubiquitin-protein fusions	Verified	chr9:48091-51306	48091-51306	98.8%	71.78	85.63	76.50	68.63	74.61	94.44	78.70	72.56	84.53	0.29	0.29	0.35	0.22	0.67	Matched[2781]
YIL155C	GUT2	"Mitochondrial glycerol-3-phosphate dehydrogenase; expression is repressed by both glucose and cAMP and derepressed by non-fermentable carbon sources in a Snf1p, Rsf1p, Hap2/3/4/5 complex dependent manner"	Verified	chr9:51759-53708	51759-53708	98.6%	127.42	171.11	305.81	317.25	899.23	935.64	149.27	311.53	917.44	0.55	1.26	3.80	1.56	1.92	Frag>80[2782,2783]
YIL154C	IMP2'	"Transcriptional activator involved in maintenance of ion homeostasis and protection against DNA damage caused by bleomycin and other oxidants, contains a C-terminal leucine-rich repeat"	Verified	chr9:53981-55021	53981-55021	98.4%	261.54	307.40	264.47	236.16	418.66	359.13	284.47	250.32	388.89	1.05	1.02	1.61	0.64	0.81	Covered/w/another[2784]
YIL153W	RRD1	"Activator of the phosphotyrosyl phosphatase activity of PP2A, peptidyl-prolyl cis/trans-isomerase; regulates G1 phase progression, microtubule dynamics, bud morphogenesis and DNA repair; subunit of the Tap42p-Sit4p-Rrd1p complex"	Verified	chr9:55198-56379	55198-56379	98.5%	128.02	129.74	166.68	140.91	250.03	195.04	128.88	153.80	222.53	0.48	0.62	0.92	0.53	0.73	Covered/w/another[2784]
YIL152W		Putative protein of unknown function	Uncharacterized	chr9:56545-57252	56545-57252	98.7%	155.93	210.29	140.19	111.58	246.05	183.11	183.11	125.89	214.58	0.68	0.51	0.89	0.77	0.69	Covered/w/another[2784]
YIL151C		"Putative protein of unknown function, predicted to contain a PINc (PilT N terminus) domain"	Uncharacterized	chr9:57338-60694	57338-60694	99.2%	131.52	134.52	101.49	82.27	72.96	72.96	133.02	91.88	72.96	0.49	0.37	0.30	-0.33	0.07	
YIL150C	MCM10	Essential chromatin-associated protein involved in the initiation of DNA replication; required for the association of the MCM2-7 complex with replication origins	Verified	chr9:61013-62728	61013-62728	99.2%	34.67	21.74	19.39	17.63	10.58	14.69	28.21	18.51	12.63	0.10	0.08	0.05	-0.55	0.28	Frag<80[2786]
YIL149C	MLP2	"Myosin-like protein associated with the nuclear envelope, connects the nuclear pore complex with the nuclear interior; involved in the Tel1p pathway that controls telomere length"	Verified	chr9:63028-68067	63028-68067	99.5%	197.09	182.72	166.57	153.00	88.97	125.27	189.90	159.78	107.12	0.70	0.65	0.44	-0.58	0.08	Matched[2787]
YIL148W	RPL40A	"Fusion protein, identical to Rpl40Bp, that is cleaved to yield ubiquitin and a ribosomal protein of the large (60S) ribosomal subunit with similarity to rat L40; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes"	Verified	chr9:68708-69528	68708-68715,69150-69528	51.7%	11327.36	9927.07	9762.03	7971.66	3705.77	2840.59	10627.21	8866.85	3273.18	39.23	35.99	13.56	-1.44	-0.30	Matched[2788]
YIL147C	SLN1	"Histidine kinase osmosensor that regulates a MAP kinase cascade; transmembrane protein with an intracellular kinase domain that signals to Ypd1p and Ssk1p, thereby forming a phosphorelay system similar to bacterial two-component regulators"	Verified	chr9:69791-73453	69791-73453	99.1%	159.53	139.14	128.12	127.29	54.00	68.88	149.33	127.71	61.44	0.55	0.52	0.25	-1.06	-0.85	Matched[2789]
YIL146C	ECM37	Non-essential protein of unknown function	Verified	chr9:74184-75773	74184-75773	98.8%	66.83	59.82	45.82	35.64	63.64	56.64	63.33	40.73	60.14	0.23	0.17	0.25	0.56	1.24	Matched[2790]
YIL145C	PAN6	"Pantothenate synthase, also known as pantoate-beta-alanine ligase, required for pantothenic acid biosynthesis, deletion causes pantothenic acid auxotrophy, homologous to E. coli panC"	Verified	chr9:76354-77283	76354-77283	99.0%	342.08	331.22	286.70	257.38	217.19	133.57	336.65	272.04	175.38	1.24	1.10	0.73	-0.63	-0.74	Frag>80[2791,2792,2793]
YIL144W	TID3	"Component of the evolutionarily conserved kinetochore-associated Ndc80 complex (Ndc80p-Nuf2p-Spc24p-Spc25p); conserved coiled-coil protein involved in chromosome segregation, spindle checkpoint activity, kinetochore assembly and clustering"	Verified	chr9:78074-80149	78074-80149	98.8%	138.43	134.04	115.52	101.87	179.37	146.23	136.23	108.69	162.80	0.50	0.44	0.67	0.58	0.83	Covered/w/another[2794]
YIL143C	SSL2	"Component of the holoenzyme form of RNA polymerase transcription factor TFIIH, has DNA-dependent ATPase/helicase activity and is required, with Rad3p, for unwinding promoter DNA; involved in DNA repair; homolog of human ERCC3"	Verified	chr9:80510-83041	80510-83041	99.1%	119.58	118.38	106.82	90.48	171.79	106.03	118.98	98.65	138.91	0.44	0.40	0.58	0.49	0.52	Covered/w/another[2794]
YIL142W	CCT2	"Subunit beta of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo"	Verified	chr9:83302-84885	83302-84885	98.5%	495.35	350.53	433.19	412.05	277.48	231.98	422.94	422.62	254.73	1.56	1.72	1.06	-0.73	-0.21	Matched[2795]
YIL142C-A		"Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:83208-83540	83208-83540	97.9%	254.47	193.15	266.73	248.34	119.57	159.43	223.81	257.54	139.50	0.83	1.05	0.58	-0.88	NaN	Covered/w/another[2795]
YIL141W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:85053-85442	85053-85442	99.3%	31.00	28.41	33.58	10.33	2.58	10.33	29.71	21.96	6.46	0.11	0.09	0.03	-1.77	0.19	Overlap[2796]
YIL140W	AXL2	"Integral plasma membrane protein required for axial budding in haploid cells, localizes to the incipient bud site and bud neck; glycosylated by Pmt4p; potential Cdc28p substrate"	Verified	chr9:85366-87837	85366-87837	99.0%	129.92	113.17	156.88	106.63	41.26	31.46	121.54	131.76	36.36	0.45	0.53	0.15	-1.86	-0.96	Frag>80[2796]
YIL139C	REV7	"Processivity subunit of DNA polymerase zeta, which is involved in DNA repair and translesion synthesis; required for mutagenesis induced by DNA damage"	Verified	chr9:87979-88716	87979-88716	99.3%	118.70	125.52	92.77	75.04	139.16	61.40	122.11	83.91	100.28	0.45	0.34	0.42	0.26	-0.18	Matched[2797]
YIL138C	TPM2	"Minor isoform of tropomyosin, binds to and stabilizes actin cables and filaments, which direct polarized cell growth and the distribution of several organelles; appears to have distinct and also overlapping functions with Tpm1p"	Verified	chr9:89230-89715	89230-89715	99.7%	660.13	796.29	635.38	610.62	1248.07	752.97	728.21	623.00	1000.52	2.69	2.53	4.15	0.68	0.02	Matched[2798]
YIL137C	TMA108	Protein that associates with ribosomes; putative metalloprotease	Verified	chr9:89948-92788	89948-92788	98.9%	173.63	171.49	173.63	162.95	156.55	163.31	172.56	168.29	159.93	0.64	0.68	0.66	-0.07	0.47	Covered[2799]
YIL136W	OM45	"Protein of unknown function, major constituent of the mitochondrial outer membrane; located on the outer (cytosolic) face of the outer membrane"	Verified	chr9:93619-94800	93619-94800	97.6%	107.50	274.81	273.94	273.07	3119.09	2574.68	191.15	273.51	2846.88	0.71	1.11	11.80	3.38	2.94	Matched[2800]
YIL135C	VHS2	"Cytoplasmic protein of unknown function; identified as a high-copy suppressor of the synthetic lethality of a sis2 sit4 double mutant, suggesting a role in G1/S phase progression; similar to Mlf3p"	Verified	chr9:95065-96375	95065-96375	98.7%	184.01	228.08	221.89	204.11	280.65	241.22	206.04	213.00	260.94	0.76	0.86	1.08	0.29	0.79	Matched[2801]
YIL134C-A		"Putative protein of unknown function, identified by fungal homology and RT-PCR"	Uncharacterized	chr9:96522-96725	96522-96725	99.1%	0.00	9.89	4.95	9.89	14.84	4.95	4.95	7.42	9.89	0.02	0.03	0.04	0.42	NaN	Covered/w/another[2802]
YIL134W	FLX1	"Protein required for transport of flavin adenine dinucleotide (FAD), a synthesis product of riboflavin, across the mitochondrial membrane"	Verified	chr9:97395-98330	97395-98330	98.7%	107.18	108.26	90.94	89.86	93.10	46.55	107.72	90.40	69.83	0.40	0.37	0.29	-0.37	-0.32	Covered[2802]
YIL133C	RPL16A	"N-terminally acetylated protein component of the large (60S) ribosomal subunit, binds to 5.8 S rRNA; has similarity to Rpl16Bp, E. coli L13 and rat L13a ribosomal proteins; transcriptionally regulated by Rap1p"	Verified	chr9:98527-99416	98527-99095,99386-99416	90.0%	5076.32	3861.41	4376.26	3453.97	705.61	205.57	4468.86	3915.12	455.59	16.50	15.89	1.89	-3.10	-3.47	Matched[2803]
YIL132C	CSM2	Protein required for accurate chromosome segregation during meiosis	Verified	chr9:99860-100501	99860-100501	99.0%	64.49	95.95	45.62	50.33	58.20	42.47	80.22	47.97	50.33	0.30	0.19	0.21	0.07	0.43	Covered/w/another[2804]
YIL131C	FKH1	Forkhead family transcription factor with a minor role in the expression of G2/M phase genes; negatively regulates transcriptional elongation; positive role in chromatin silencing at HML and HMR; regulates donor preference during switching	Verified	chr9:100781-102235	100781-102235	99.0%	143.67	117.99	102.03	90.92	71.49	63.16	130.83	96.47	67.32	0.48	0.39	0.28	-0.52	-0.14	Covered/w/another[2804]
YIL130W	ASG1	"Proposed transcriptional activator, member of the Gal4p family of zinc cluster proteins"	Verified	chr9:102782-105676	102782-105676	97.5%	156.90	177.44	145.56	134.58	75.08	108.38	167.17	140.07	91.73	0.62	0.57	0.38	-0.61	0.15	Matched[2805]
YIL129C	TAO3	"Protein involved in cell morphogenesis and proliferation, associated with protein kinase Cbk1p; mutants activate OCH1 transcription"	Verified	chr9:106107-113237	106107-113237	99.1%	74.12	91.52	64.50	55.59	63.09	96.33	82.82	60.05	79.71	0.31	0.24	0.33	0.41	0.51	Frag>80[2806,2807,2808]
YIL128W	MET18	"DNA repair and TFIIH regulator, required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription; involved in telomere maintenance"	Verified	chr9:113806-116904	113806-116904	99.1%	104.56	98.70	95.44	78.83	62.54	72.97	101.63	87.14	67.75	0.38	0.35	0.28	-0.36	0.14	Matched[2809]
YIL127C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus	Uncharacterized	chr9:117024-117644	117024-117644	99.3%	210.73	179.93	136.16	110.23	19.45	17.83	195.33	123.19	18.64	0.72	0.50	0.08	-2.72	-3.37	Matched[2810]
YIL126W	STH1	ATPase component of the RSC chromatin remodeling complex; required for expression of early meiotic genes; essential helicase-related protein homologous to Snf2p	Verified	chr9:117992-122071	117992-122071	98.5%	267.03	245.38	218.01	219.00	115.47	147.58	256.21	218.51	131.53	0.95	0.89	0.54	-0.73	-0.10	Matched[2811]
YIL125W	KGD1	"Component of the mitochondrial alpha-ketoglutarate dehydrogenase complex, which catalyzes a key step in the tricarboxylic acid (TCA) cycle, the oxidative decarboxylation of alpha-ketoglutarate to form succinyl-CoA"	Verified	chr9:122689-125733	122689-125733	98.7%	285.73	334.62	358.57	387.84	338.95	414.45	310.17	373.21	376.70	1.14	1.51	1.56	0.01	0.54	Matched[2812]
YIL124W	AYR1	"NADPH-dependent 1-acyl dihydroxyacetone phosphate reductase found in lipid particles, ER, and mitochondrial outer membrane; involved in phosphatidic acid biosynthesis; required for spore germination; capable of metabolizing steroid hormones"	Verified	chr9:126204-127097	126204-127097	98.8%	719.76	956.29	751.45	872.54	2184.18	1444.05	838.03	812.00	1814.12	3.09	3.30	7.52	1.16	0.95	Matched[2813]
YIL123W	SIM1	"Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p) that may participate in DNA replication, promoter contains SCB regulation box at -300 bp indicating that expression may be cell cycle-regulated"	Verified	chr9:127661-129578	127661-127662,128149-129578	98.1%	1715.10	1880.92	1781.28	1724.35	524.49	407.78	1798.01	1752.82	466.14	6.64	7.12	1.93	-1.91	-1.65	Matched[2814]
YIL122W	POG1	Putative transcriptional activator that promotes recovery from pheromone induced arrest; inhibits both alpha-factor induced G1 arrest and repression of CLN1 and CLN2 via SCB/MCB promoter elements; potential Cdc28p substrate; SBF regulated	Verified	chr9:130607-131662	130607-131662	98.6%	58.61	75.90	64.37	53.81	102.81	83.59	67.26	59.09	93.20	0.25	0.24	0.39	0.66	1.14	Matched[2815]
YIL121W	QDR2	"Multidrug transporter of the major facilitator superfamily, required for resistance to quinidine, barban, cisplatin, and bleomycin; may have a role in potassium uptake"	Verified	chr9:132241-133869	132241-133869	98.8%	471.17	677.54	466.82	472.42	167.83	136.75	574.36	469.62	152.29	2.12	1.91	0.63	-1.62	-1.47	Matched[2816]
YIL120W	QDR1	"Multidrug transporter of the major facilitator superfamily, required for resistance to quinidine, ketoconazole, fluconazole, and barban"	Verified	chr9:134414-136105	134414-136105	98.8%	56.24	55.04	40.68	38.29	68.80	41.28	55.64	39.49	55.04	0.21	0.16	0.23	0.48	0.05	Matched[2817]
YIL119C	RPI1	Putative transcriptional regulator; overexpression suppresses the heat shock sensitivity of wild-type RAS2 overexpression and also suppresses the cell lysis defect of an mpk1 mutation	Verified	chr9:136651-137874	136651-137874	99.2%	336.95	501.72	339.42	327.06	316.35	232.32	419.33	333.24	274.34	1.55	1.35	1.14	-0.28	-0.28	Matched[2818]
YIL118W	RHO3	Non-essential small GTPase of the Rho/Rac subfamily of Ras-like proteins involved in the establishment of cell polarity; GTPase activity positively regulated by the GTPase activating protein (GAP) Rgd1p	Verified	chr9:139749-140444	139749-140444	98.7%	500.76	443.99	477.47	468.73	457.09	273.67	472.37	473.10	365.38	1.74	1.92	1.51	-0.37	-0.45	Matched[2819]
YIL117C	PRM5	"Pheromone-regulated protein, predicted to have 1 transmembrane segment; induced during cell integrity signaling"	Verified	chr9:140610-141566	140610-141566	98.7%	139.68	146.03	182.01	149.21	487.83	370.37	142.86	165.61	429.10	0.53	0.67	1.78	1.37	1.08	Matched[2820]
YIL116W	HIS5	"Histidinol-phosphate aminotransferase, catalyzes the seventh step in histidine biosynthesis; responsive to general control of amino acid biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts"	Verified	chr9:142925-144082	142925-144082	98.8%	458.01	657.29	434.41	396.82	299.80	250.86	557.65	415.62	275.33	2.06	1.69	1.14	-0.59	-0.08	Matched[2821]
YIL115W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene NUP159/YIL115C"	Dubious	chr9:144265-144636	144265-144636	99.5%	345.98	270.30	256.79	202.73	240.57	148.67	308.14	229.76	194.62	1.14	0.93	0.81	-0.24	NaN	Covered/w/another[2822]
YIL115C	NUP159	"Nucleoporin, subunit of the nuclear pore complex that is found exclusively on the cytoplasmic side, forms a subcomplex with Nup82p and Nsp1p, required for mRNA export"	Verified	chr9:144324-148706	144324-148706	96.5%	162.86	150.34	136.63	130.24	88.64	82.97	156.60	133.44	85.81	0.58	0.54	0.36	-0.64	-0.34	Matched[2822]
YIL114C	POR2	"Putative mitochondrial porin (voltage-dependent anion channel), related to Por1p but not required for mitochondrial membrane permeability or mitochondrial osmotic stability"	Verified	chr9:149140-149985	149140-149985	99.0%	192.17	192.17	125.33	126.52	204.11	149.20	192.17	125.93	176.65	0.71	0.51	0.73	0.49	0.19	Frag>80[2823,2824]
YIL113W	SDP1	"Stress-inducible dual-specificity MAP kinase phosphatase, negatively regulates Slt2p MAP kinase by direct dephosphorylation, diffuse localization under normal conditions shifts to punctate localization after heat shock"	Verified	chr9:150556-151185	150556-151185	98.4%	30.66	56.49	46.80	56.49	550.33	334.07	43.57	51.64	442.20	0.16	0.21	1.83	3.10	2.87	Frag>80[2825,2826]
YIL112W	HOS4	"Subunit of the Set3 complex, which is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate"	Verified	chr9:151592-154843	151592-154843	98.4%	200.38	229.14	160.68	167.56	253.21	209.45	214.76	164.12	231.33	0.79	0.67	0.96	0.50	0.34	Frag>80[2826,2827,2828]
YIL111W	COX5B	"Subunit Vb of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; predominantly expressed during anaerobic growth while its isoform Va (Cox5Ap) is expressed during aerobic growth"	Verified	chr9:155219-155762	155219-155219,155308-155762	98.4%	784.55	2112.93	1014.12	1014.12	3011.14	1943.54	1448.74	1014.12	2477.34	5.35	4.12	10.26	1.29	0.26	Matched[2829]
YIL110W		"Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family; deletion mutant exhibits a weak vacuolar protein sorting defect, enhanced resistance to caspofungin, and is synthetically lethal with MEN mutants"	Uncharacterized	chr9:156042-157175	156042-157175	98.8%	165.08	151.70	126.71	120.46	74.06	49.08	158.39	123.59	61.57	0.58	0.50	0.26	-1.01	-0.95	Frag>80[2830,2831,2832]
YIL109C	SEC24	"Component of the Sec23p-Sec24p heterodimeric complex of the COPII vesicle coat; involved in ER to Golgi transport, cargo selection and autophagy; required for the binding of the Sec13 complex to ER membranes; homologous to Lst1p and Lss1p"	Verified	chr9:157382-160162	157382-160162	98.3%	458.68	424.30	496.36	448.08	394.67	479.90	441.49	472.22	437.28	1.63	1.92	1.81	-0.11	0.56	Frag>80[2832,2833]
YIL108W		Putative metalloprotease	Uncharacterized	chr9:160884-162974	160884-162974	98.6%	135.37	137.31	141.68	135.37	188.25	242.11	136.34	138.52	215.18	0.50	0.56	0.89	0.64	1.28	Matched[2834]
YIL107C	PFK26	"6-phosphofructo-2-kinase, inhibited by phosphoenolpyruvate and sn-glycerol 3-phosphate, has negligible fructose-2,6-bisphosphatase activity, transcriptional regulation involves protein kinase A"	Verified	chr9:163275-165758	163275-165758	99.2%	172.50	245.56	174.53	156.67	437.96	340.54	209.03	165.60	389.25	0.77	0.67	1.61	1.23	1.62	Matched[2835]
YIL106W	MOB1	Component of the mitotic exit network; associates with and is required for the activation and Cdc15p-dependent phosphorylation of the Dbf2p kinase; required for cytokinesis and cell separation; component of the CCR4 transcriptional complex	Verified	chr9:166412-167441	166412-166431,166517-167441	98.8%	197.07	177.79	183.15	171.37	169.23	107.10	187.43	177.26	138.16	0.69	0.72	0.57	-0.36	0.11	Matched[2836]
YIL105W-A		"Dubious open reading frame; completely overlaps the verified gene SLM1; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr9:167661-167801	167661-167801	99.5%	185.38	192.51	206.77	178.25	577.54	527.63	188.95	192.51	552.58	0.70	0.78	2.29	1.52	NaN	Covered/w/another[2837]
YIL105C	SLM1	"Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm2p; acts downstream of Mss4p in a pathway regulating actin cytoskeleton organization in response to stress; subunit of and phosphorylated by the TORC2 complex"	Verified	chr9:167578-169638	167578-169638	97.8%	131.52	156.83	159.31	156.33	397.03	342.44	144.17	157.82	369.73	0.53	0.64	1.53	1.23	1.51	Matched[2837]
YIL104C	SHQ1	"Essential nuclear protein, required for accumulation of box H/ACA snoRNAs and for rRNA processing; interacts with Naf1p"	Verified	chr9:169979-171502	169979-171502	99.3%	74.03	56.84	48.91	36.35	19.17	10.58	65.43	42.63	14.87	0.24	0.17	0.06	-1.52	-1.56	Matched[2838]
YIL103W	DPH1	"Protein required, along with Dph2p, Kti11p, Jjj3p, and Dph5p, for synthesis of diphthamide, which is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); may act in a complex with Dph2p and Kti11p"	Verified	chr9:171748-173025	171748-173025	98.8%	171.13	149.74	135.48	97.45	62.59	29.31	160.43	116.46	45.95	0.59	0.47	0.19	-1.34	-3.40	Frag>80[2839,2840]
YIL102C-A		"Putative protein of unknown function, identified based on comparisons of the genome sequences of six Saccharomyces species"	Uncharacterized	chr9:173362-173589	173362-173589	98.5%	133.61	142.51	115.79	138.06	129.15	71.26	138.06	126.93	100.20	0.51	0.52	0.42	-0.34	NaN	Covered[2840]
YIL102C		Putative protein of unknown function	Uncharacterized	chr9:174579-174884	174579-174884	99.2%	3.29	9.88	0.00	0.00	16.47	19.77	6.59	0.00	18.12	0.02	0.00	0.08	Inf	0.18	Matched[2841]
YIL101C	XBP1	"Transcriptional repressor that binds to promoter sequences of the cyclin genes, CYS3, and SMF2; expression is induced by stress or starvation during mitosis, and late in meiosis; member of the Swi4p/Mbp1p family; potential Cdc28p substrate"	Verified	chr9:175304-177247	175304-177247	98.3%	48.13	48.13	96.25	69.05	347.86	366.70	48.13	82.65	357.28	0.18	0.34	1.48	2.11	2.29	Frag>80[2842,2843]
YIL100W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the dubious ORF YIL100C-A"	Dubious	chr9:177370-177723	177370-177723	95.0%	5.95	17.85	11.90	5.95	50.56	41.64	11.90	8.92	46.10	0.04	0.04	0.19	2.37	2.41	Covered/w/another[2844]
YIL100C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:177340-177678	177340-177678	95.2%	6.20	12.40	12.40	12.40	55.78	34.09	9.30	12.40	44.93	0.03	0.05	0.19	1.86	NaN	Covered/w/another[2844]
YIL099W	SGA1	"Intracellular sporulation-specific glucoamylase involved in glycogen degradation; induced during starvation of a/a diploids late in sporulation, but dispensable for sporulation"	Verified	chr9:178001-179650	178001-179650	98.5%	12.30	22.76	23.37	23.99	193.11	142.68	17.53	23.68	167.90	0.06	0.10	0.70	2.83	2.75	Matched[2844]
YIL098C	FMC1	"Mitochondrial matrix protein, required for assembly or stability at high temperature of the F1 sector of mitochondrial F1F0 ATP synthase; null mutant temperature sensitive growth on glycerol is suppressed by multicopy expression of Odc1p"	Verified	chr9:179769-180236	179769-180236	99.5%	191.12	182.53	184.68	186.83	414.46	272.73	186.83	185.76	343.59	0.69	0.75	1.42	0.89	0.45	Matched[2845]
YIL097W	FYV10	"Protein of unknown function, required for survival upon exposure to K1 killer toxin; involved in proteasome-dependent catabolite inactivation of fructose-1,6-bisphosphatase; contains CTLH domain"	Verified	chr9:180424-181974	180424-181974	99.0%	56.00	66.41	56.00	68.37	226.59	175.80	61.20	62.18	201.19	0.23	0.25	0.83	1.69	1.68	Matched[2846]
YIL096C		Putative protein of unknown function; associates with precursors of the 60S ribosomal subunit	Uncharacterized	chr9:182114-183124	182114-183124	99.4%	117.39	61.68	55.71	37.80	5.97	8.95	89.54	46.76	7.46	0.33	0.19	0.03	-2.65	-2.75	Matched[2847]
YIL095W	PRK1	Protein serine/threonine kinase; regulates the organization and function of the actin cytoskeleton through the phosphorylation of the Pan1p-Sla1p-End3p protein complex	Verified	chr9:183934-186366	183934-186366	98.9%	81.01	76.03	71.04	61.90	92.23	79.76	78.52	66.47	86.00	0.29	0.27	0.36	0.37	0.48	Matched[2848]
YIL094C	LYS12	"Homo-isocitrate dehydrogenase, an NAD-linked mitochondrial enzyme required for the fourth step in the biosynthesis of lysine, in which homo-isocitrate is oxidatively decarboxylated to alpha-ketoadipate"	Verified	chr9:186514-187629	186514-187629	99.0%	1051.19	1102.80	982.38	808.54	334.10	239.03	1077.00	895.46	286.57	3.98	3.63	1.19	-1.64	-1.29	Frag>80[2849,2850]
YIL093C	RSM25	Mitochondrial ribosomal protein of the small subunit	Verified	chr9:187987-188781	187987-188781	99.2%	249.68	242.08	225.60	259.82	171.10	144.49	245.88	242.71	157.79	0.91	0.99	0.65	-0.62	-0.52	Matched[2851]
YIL092W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and to the nucleus	Uncharacterized	chr9:189063-190964	189063-190964	98.7%	63.38	64.98	37.82	38.35	21.84	16.51	64.18	38.08	19.17	0.24	0.15	0.08	-0.99	-0.82	Covered/w/another[2852]
YIL091C		Protein required for cell viability	Uncharacterized	chr9:191027-193192	191027-193192	99.3%	139.47	101.35	90.19	68.80	8.83	4.18	120.41	79.50	6.51	0.44	0.32	0.03	-3.61	-3.21	Covered/w/another[2852]
YIL090W	ICE2	Integral ER membrane protein with type-III transmembrane domains; mutations cause defects in cortical ER morphology in both the mother and daughter cells	Verified	chr9:193592-195067	193592-195067	98.9%	160.94	162.31	134.91	104.09	74.65	58.21	161.62	119.50	66.43	0.60	0.49	0.28	-0.85	-0.37	Matched[2853]
YIL089W		Putative protein of unknown function	Uncharacterized	chr9:195596-196213	195596-196213	99.2%	45.68	70.15	47.31	45.68	109.31	60.36	57.92	46.50	84.83	0.21	0.19	0.35	0.87	0.62	Matched[2854]
YIL088C	AVT7	"Putative transporter, member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters"	Verified	chr9:197928-199400	197928-199400	98.9%	570.37	589.58	563.50	549.78	400.84	346.61	579.98	556.64	373.72	2.14	2.26	1.55	-0.57	-0.31	Frag>80[2855,2856]
YIL087C		"Putative protein of unknown function; GFP-fusion protein is induced in response to the DNA-damaging agent MMS; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr9:199643-200116	199643-200116	98.3%	115.93	178.19	158.87	191.07	809.37	463.73	147.06	174.97	636.55	0.54	0.71	2.64	1.86	1.79	Matched[2857]
YIL086C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:200150-200458	200150-200458	99.0%	45.75	26.14	45.75	39.22	205.88	130.72	35.95	42.48	168.30	0.13	0.17	0.70	1.99	0.32	Matched[2857]
YIL085C	KTR7	Putative mannosyltransferase involved in protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family	Verified	chr9:200487-202040	200487-202040	99.2%	258.29	238.82	242.71	228.44	181.71	173.92	248.55	235.57	177.82	0.92	0.96	0.74	-0.41	0.12	Covered/w/another[2858]
YIL084C	SDS3	"Component of the Rpd3p/Sin3p deacetylase complex required for its structural integrity and catalytic activity, involved in transcriptional silencing and required for sporulation; cells defective in SDS3 display pleiotropic phenotypes"	Verified	chr9:202273-203256	202273-203256	99.2%	100.38	76.82	75.80	78.87	79.90	78.87	88.60	77.34	79.39	0.33	0.31	0.33	0.04	0.76	Covered/w/another[2858]
YIL083C		"Putative phosphopantothenoylcysteine synthetase (PPCS) that catalyzes the second step in the biosynthesis of coenzyme A from pantothenate; conserved in bacteria, humans, and plants; essential for viability"	Uncharacterized	chr9:203553-204650	203553-204650	99.0%	244.79	359.83	192.34	192.34	109.51	59.82	302.31	192.34	84.67	1.12	0.78	0.35	-1.18	-1.34	Matched[2859]
YIL082W		Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag	Dubious	chr9:205632-206504	205632-206504	8.0%	128.27	114.01	57.01	114.01	57.01	71.26	121.14	85.51	64.13	0.45	0.35	0.27	-0.42	-0.75	Frag<80[2860,2861]
YIL079C	AIR1	"RING finger protein that interacts with the arginine methyltransferase Hmt1p to regulate methylation of Npl3p, which modulates Npl3p function in mRNA processing and export; has similarity to Air2p"	Verified	chr9:210920-212002	210920-212002	99.2%	121.91	107.95	80.96	74.45	11.17	0.93	114.93	77.71	6.05	0.42	0.32	0.03	-3.68	-1.47	Matched[2864]
YIL078W	THS1	"Threonyl-tRNA synthetase, essential cytoplasmic protein"	Verified	chr9:212496-214700	212496-214700	98.7%	2047.28	1503.76	1839.62	1796.89	637.25	731.90	1775.52	1818.25	684.57	6.55	7.38	2.84	-1.41	-1.44	Matched[2865]
YIL077C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; deletion confers sensitivity to 4-(N-(S-glutathionylacetyl)amino) phenylarsenoxide (GSAO)"	Uncharacterized	chr9:214988-215950	214988-215950	99.1%	106.83	140.35	127.78	146.64	240.90	144.54	123.59	137.21	192.72	0.46	0.56	0.80	0.49	0.82	Frag>80[2866,2867,2868]
YIL076W	SEC28	"Epsilon-COP subunit of the coatomer; regulates retrograde Golgi-to-ER protein traffic; stabilizes Cop1p, the alpha-COP and the coatomer complex; non-essential for cell growth"	Verified	chr9:216655-217545	216655-217545	98.9%	830.60	837.41	760.25	824.93	1090.44	773.86	834.00	792.59	932.15	3.08	3.22	3.86	0.23	0.36	Matched[2869]
YIL075C	RPN2	"Subunit of the 26S proteasome, substrate of the N-acetyltransferase Nat1p"	Verified	chr9:217860-220697	217860-220697	99.1%	707.57	627.56	697.61	669.88	946.86	849.43	667.57	683.74	898.15	2.46	2.78	3.72	0.39	0.59	Matched[2871]
YIL074C	SER33	"3-phosphoglycerate dehydrogenase, catalyzes the first step in serine and glycine biosynthesis; isozyme of Ser3p"	Verified	chr9:221078-222487	221078-222487	85.9%	372.48	385.70	379.92	298.98	247.77	133.80	379.09	339.45	190.78	1.40	1.38	0.79	-0.83	-0.54	Matched[2872]
YIL073C	SPO22	"Meiosis-specific protein essential for chromosome synapsis, similar to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis"	Verified	chr9:222934-225951	222934-225806,225897-225951	99.3%	43.66	49.51	34.04	27.50	18.91	12.72	46.59	30.77	15.82	0.17	0.12	0.07	-0.96	1.27	Frag<80[2873]
YIL072W	HOP1	Meiosis-specific DNA binding protein that displays Red1p dependent localization to the unsynapsed axial-lateral elements of the synaptonemal complex; required for homologous chromosome synapsis and chiasma formation	Verified	chr9:226599-228416	226599-228416	98.9%	28.93	30.05	21.14	17.80	46.74	28.38	29.49	19.47	37.56	0.11	0.08	0.16	0.95	0.91	Matched[2874]
YIL071W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:228547-229023	228547-229023	99.6%	111.58	143.16	120.00	105.26	197.89	98.95	127.37	112.63	148.42	0.47	0.46	0.61	0.40	NaN	Covered/w/another[2875]
YIL071C	PCI8	"Possible shared subunit of Cop9 signalosome (CSN) and eIF3, binds eIF3b subunit Prt1p, has possible dual functions in transcriptional and translational control, contains a PCI (Proteasome-COP9 signalosome (CSN)-eIF3) domain"	Verified	chr9:228657-229991	228657-229991	99.4%	71.61	101.01	84.42	72.36	131.16	91.21	86.31	78.39	111.18	0.32	0.32	0.46	0.50	0.81	Matched[2875]
YIL070C	MAM33	Acidic protein of the mitochondrial matrix involved in oxidative phosphorylation; related to the human complement receptor gC1q-R	Verified	chr9:230269-231069	230269-231069	99.1%	416.81	371.48	484.81	454.59	402.96	255.63	394.14	469.70	329.29	1.45	1.91	1.36	-0.51	-0.33	Matched[2876]
YIL069C	RPS24B	Protein component of the small (40S) ribosomal subunit; identical to Rps24Ap and has similarity to rat S24 ribosomal protein	Verified	chr9:231550-232366	231550-231954,232364-232366	32.2%	3216.73	2327.00	2365.02	1665.40	334.60	83.65	2771.86	2015.21	209.13	10.23	8.18	0.87	-3.27	-2.63	Frag>80[2877,2878]
YIL068W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:233010-233393	233010-233393	99.5%	188.46	162.29	151.82	136.11	371.69	204.17	175.37	143.96	287.93	0.65	0.58	1.19	1.00	NaN	Frag<80[2879]
YIL068C	SEC6	"Essential 88kDa subunit of the exocyst complex, which mediates polarized targeting of secretory vesicles to active sites of exocytosis; dimeric form of Sec6p interacts with Sec9p in vitro and inhibits t-SNARE assembly"	Verified	chr9:233054-235471	233054-235471	99.4%	124.41	139.80	116.92	101.11	187.24	140.22	132.11	109.01	163.73	0.49	0.44	0.68	0.59	0.72	Frag>80[2879,2880]
YIL066W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:237363-237806	237363-237806	99.4%	38.54	31.74	27.20	45.34	31.74	22.67	35.14	36.27	27.20	0.13	0.15	0.11	-0.42	NaN	Covered/w/another[2881]
YIL067C		Uncharacterized protein of unknown function	Uncharacterized	chr9:235721-237757	235721-237757	99.0%	69.43	69.93	81.83	57.53	67.94	44.14	69.68	69.68	56.04	0.26	0.28	0.23	-0.31	0.21	Matched[2881]
YIL066C	RNR3	"Ribonucleotide-diphosphate reductase (RNR), large subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits"	Verified	chr9:238096-240705	238096-240705	97.2%	11.82	65.81	15.37	10.25	15.76	27.19	38.81	12.81	21.48	0.14	0.05	0.09	0.75	1.02	
YIL065C	FIS1	"Mitochondrial outer membrane protein involved in membrane fission, required for localization of Dnm1p and Mdv1p during mitochondrial division; mediates ethanol-induced apoptosis and ethanol-induced mitochondrial fragmentation"	Verified	chr9:241305-241772	241305-241772	98.9%	293.90	304.70	224.74	188.01	654.78	505.67	299.30	206.37	580.23	1.10	0.84	2.40	1.49	0.72	Matched[2882]
YIL064W		Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family	Uncharacterized	chr9:241940-242713	241940-242713	98.3%	158.97	65.69	88.02	76.20	26.28	11.82	112.33	82.11	19.05	0.41	0.33	0.08	-2.11	-1.55	Frag>80[2883,2884]
YIL063C	YRB2	"Protein of unknown function involved in nuclear processes of the Ran-GTPase cycle; involved in nuclear protein export; contains Ran Binding Domain and FxFG repeats; interacts with Srm1p, GTP-Gsp1p, Rna1p and Crm1p; is not essential"	Verified	chr9:242758-243741	242758-243741	99.5%	275.87	270.77	304.48	293.24	521.09	384.18	273.32	298.86	452.64	1.01	1.21	1.88	0.60	0.37	Matched[2885]
YIL062C	ARC15	"Subunit of the ARP2/3 complex, which is required for the motility and integrity of cortical actin patches"	Verified	chr9:243995-244459	243995-244459	98.9%	624.25	704.73	776.51	654.70	1559.54	967.92	664.49	715.61	1263.73	2.45	2.90	5.24	0.82	0.79	Matched[2886]
YIL061C	SNP1	Component of U1 snRNP required for mRNA splicing via spliceosome; may interact with poly(A) polymerase to regulate polyadenylation; homolog of human U1 70K protein	Verified	chr9:244654-245556	244654-245556	98.9%	75.03	80.63	59.35	45.91	30.24	23.52	77.83	52.63	26.88	0.29	0.21	0.11	-0.97	0.71	Matched[2887]
YIL060W		Putative protein of unknown function; mutant accumulates less glycogen than does wild type; YIL060W is not an essential gene	Uncharacterized	chr9:246389-246823	246389-246823	63.0%	105.90	314.06	109.56	105.90	160.68	65.73	209.98	107.73	113.21	0.78	0.44	0.47	0.07	0.14	Frag<80[2888]
YIL058W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:246911-247195	246911-247195	98.9%	42.55	117.02	53.19	53.19	28.37	21.28	79.79	53.19	24.82	0.29	0.22	0.10	-1.10	0.12	Frag>80[2888,2889]
YIL059C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YIL060W"	Dubious	chr9:246547-246912	246547-246912	91.0%	90.05	291.15	108.05	87.04	147.07	54.03	190.60	97.55	100.55	0.70	0.40	0.42	0.04	0.21	Matched[2888]
YIL057C		Putative protein of unknown function; expression induced under carbon limitation and repressed under high glucose	Uncharacterized	chr9:247899-248393	247899-248393	99.2%	2.04	10.18	4.07	6.11	4.07	18.33	6.11	5.09	11.20	0.02	0.02	0.05	1.14	0.78	
YIL056W	VHR1	"Transcriptional activator, required for the vitamin H-responsive element (VHRE) mediated induction of VHT1 (Vitamin H transporter) and BIO5 (biotin biosynthesis intermediate transporter) in response to low biotin concentrations"	Verified	chr9:249989-251911	249989-251911	99.0%	125.49	100.29	119.71	92.94	109.21	126.01	112.89	106.32	117.61	0.42	0.43	0.49	0.15	0.86	Matched[2890]
YIL055C		Putative protein of unknown function	Uncharacterized	chr9:252040-253923	252040-253923	98.7%	34.43	39.28	38.20	35.51	169.48	173.25	36.86	36.86	171.37	0.14	0.15	0.71	2.22	2.28	Matched[2891]
YIL054W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr9:254541-254858	254541-254858	99.2%	12.67	0.00	0.00	3.17	12.67	12.67	6.34	1.58	12.67	0.02	0.01	0.05	3.00	1.07	Matched[2892]
YIL053W	RHR2	"Constitutively expressed isoform of DL-glycerol-3-phosphatase; involved in glycerol biosynthesis, induced in response to both anaerobic and, along with the Hor2p/Gpp2p isoform, osmotic stress"	Verified	chr9:255113-255865	255113-255865	96.6%	4872.34	3336.24	3700.66	2643.14	891.13	434.56	4104.29	3171.90	662.85	15.15	12.88	2.75	-2.26	-2.66	Matched[2893]
YIL052C	RPL34B	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl34Ap and has similarity to rat L34 ribosomal protein"	Verified	chr9:256224-257061	256224-256552,257025-257061	75.9%	7731.25	6475.10	6457.11	5737.25	1691.66	1576.48	7103.18	6097.18	1634.07	26.22	24.75	6.77	-1.90	-2.55	Frag>80[2894,2895,2896]
YIL051C	MMF1	Mitochondrial protein involved in maintenance of the mitochondrial genome	Verified	chr9:257842-258279	257842-258279	98.7%	2305.65	2564.66	2421.28	2532.28	4997.49	3563.69	2435.15	2476.78	4280.59	8.99	10.05	17.74	0.79	0.29	Matched[2897]
YIL050W	PCL7	"Pho85p cyclin of the Pho80p subfamily, forms a functional kinase complex with Pho85p which phosphorylates Mmr1p and is regulated by Pho81p; involved in glycogen metabolism, expression is cell-cycle regulated"	Verified	chr9:258912-259769	258912-259769	98.9%	166.18	144.97	126.11	149.68	297.01	192.11	155.58	137.90	244.56	0.57	0.56	1.01	0.83	1.06	Frag>80[2898,2899]
YIL049W	DFG10	"Protein of unknown function, involved in filamentous growth"	Verified	chr9:260157-260918	260157-260918	99.5%	139.85	114.78	100.27	76.52	109.50	48.82	127.32	88.40	79.16	0.47	0.36	0.33	-0.16	-0.59	Covered/w/another[2900]
YIL048W	NEO1	Putative aminophospholipid translocase (flippase) involved in endocytosis and vacuolar biogenesis; localizes to endosomes and the Golgi aparatus	Verified	chr9:261436-264891	261436-264891	99.1%	106.85	116.49	104.52	97.51	91.38	76.20	111.67	101.01	83.79	0.41	0.41	0.35	-0.27	-0.17	
YIL047C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:265098-265466	265098-265466	98.5%	844.47	990.26	429.11	319.08	280.57	165.04	917.36	374.10	222.81	3.39	1.52	0.92	-0.75	NaN	Covered/w/another[2901]
YIL047C	SYG1	Plasma membrane protein of unknown function; truncation and overexpression suppresses lethality of G-alpha protein deficiency	Verified	chr9:265114-267822	265114-267822	98.7%	396.19	467.65	206.89	162.74	106.25	101.39	431.92	184.81	103.82	1.59	0.75	0.43	-0.83	-0.58	Matched[2901]
YIL046W-A		Putative protein of unknown function; identified by expression profiling and mass spectrometry	Uncharacterized	chr9:268308-268472	268308-268472	98.3%	18.50	6.17	0.00	12.34	18.50	43.18	12.34	6.17	30.84	0.05	0.03	0.13	2.32	NaN	Covered/w/another[2902]
YIL046W	MET30	"F-box protein containing five copies of the WD40 motif, controls cell cycle function, sulfur metabolism, and methionine biosynthesis as part of the ubiquitin ligase complex; interacts with and regulates Met4p, localizes within the nucleus"	Verified	chr9:268650-270572	268650-270572	98.2%	94.75	112.22	83.10	71.46	82.04	77.81	103.48	77.28	79.93	0.38	0.31	0.33	0.05	-0.04	Matched[2902]
YIL045W	PIG2	Putative type-1 protein phosphatase targeting subunit that tethers Glc7p type-1 protein phosphatase to Gsy2p glycogen synthase	Verified	chr9:271160-272776	271160-272776	98.8%	80.74	227.21	142.09	148.97	450.67	447.54	153.98	145.53	449.10	0.57	0.59	1.86	1.63	1.68	Matched[2903]
YIL044C	AGE2	"ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector, involved in Trans-Golgi-Network (TGN) transport; contains C2C2H2 cysteine/histidine motif"	Verified	chr9:272949-273845	272949-273845	98.9%	295.28	314.44	247.95	251.33	209.63	156.66	304.86	249.64	183.14	1.13	1.01	0.76	-0.45	-0.08	Matched[2904]
YIL043C	CBR1	"Microsomal cytochrome b reductase, not essential for viability; also detected in mitochondria; mutation in conserved NADH binding domain of the human ortholog results in type I methemoglobinemia"	Verified	chr9:274071-274925	274071-274925	98.7%	1139.42	1416.57	1043.48	1159.55	883.58	785.27	1277.99	1101.52	834.43	4.72	4.47	3.46	-0.40	-0.11	Matched[2905]
YIL042C	PKP1	"Mitochondrial kinase, phosphorylates pyruvate dehydrogenase alpha subunit Pda1p"	Verified	chr9:275107-276291	275107-276291	98.6%	83.00	113.80	98.40	77.87	113.80	89.85	98.40	88.13	101.83	0.36	0.36	0.42	0.21	0.41	Matched[2906]
YIL041W	GVP36	"Golgi vesicle protein of unknown function; localizes to both early and late Golgi vesicles; may interact with ribosomes, based on co-purification experiments"	Verified	chr9:276524-277504	276524-277504	98.4%	981.05	881.60	886.78	869.17	891.96	712.74	931.32	877.97	802.35	3.44	3.56	3.32	-0.13	0.27	Matched[2907]
YIL040W	APQ12	Protein involved in nucleocytoplasmic transport of mRNA	Verified	chr9:277722-278138	277722-278138	99.3%	350.03	306.58	345.20	263.13	323.48	125.53	328.30	304.16	224.50	1.21	1.23	0.93	-0.44	-0.83	Matched[2908]
YIL039W	TED1	Conserved phosphoesterase domain-containing protein that acts together with Emp24p/Erv25p in cargo exit from the ER; deletion confers sensitivity to 4-(N-(S-glutathionylacetyl)amino) phenylarsenoxide (GSAO)	Uncharacterized	chr9:278425-279846	278425-279846	98.8%	382.29	373.03	377.30	373.03	208.58	165.87	377.66	375.17	187.23	1.39	1.52	0.78	-1.00	-0.57	Matched[2909]
YIL038C	NOT3	"Subunit of the CCR4-NOT complex, which is a global transcriptional regulator with roles in transcription initiation and elongation and in mRNA degradation"	Verified	chr9:280141-282651	280141-282651	99.2%	227.73	195.20	200.02	178.73	134.95	130.13	211.47	189.38	132.54	0.78	0.77	0.55	-0.51	0.00	Frag>80[2910,2911]
YIL037C	PRM2	"Pheromone-regulated protein, predicted to have 4 transmembrane segments and a coiled coil domain; regulated by Ste12p"	Verified	chr9:283028-284998	283028-284998	99.2%	29.16	34.28	25.07	16.37	26.09	15.86	31.72	20.72	20.97	0.12	0.08	0.09	0.02	-0.14	
YIL036W	CST6	"Basic leucine zipper (bZIP) transcription factor of the ATF/CREB family, activates transcription of genes involved in utilization of non-optimal carbon sources; involved in telomere maintenance"	Verified	chr9:285665-287428	285665-287428	98.8%	162.32	180.10	209.35	217.38	358.48	279.33	171.21	213.37	318.91	0.63	0.87	1.32	0.58	0.66	Matched[2912]
YIL035C	CKA1	"Alpha catalytic subunit of casein kinase 2, a Ser/Thr protein kinase with roles in cell growth and proliferation; the holoenzyme also contains CKA2, CKB1 and CKB2, the many substrates include transcription factors and all RNA polymerases"	Verified	chr9:287789-288907	287789-288907	99.4%	566.55	498.20	500.00	427.16	484.71	324.64	532.37	463.58	404.68	1.97	1.88	1.68	-0.20	-0.06	Matched[2913]
YIL034C	CAP2	Beta subunit of the capping protein (CP) heterodimer (Cap1p and Cap2p) which binds to the barbed ends of actin filaments preventing further polymerization; localized predominantly to cortical actin patches	Verified	chr9:289225-290088	289225-290088	98.7%	650.52	702.09	621.22	668.10	1121.70	966.99	676.30	644.66	1044.34	2.50	2.62	4.33	0.70	0.97	Frag>80[2914,2915]
YIL033C	BCY1	"Regulatory subunit of the cyclic AMP-dependent protein kinase (PKA), a component of a signaling pathway that controls a variety of cellular processes, including metabolism, cell cycle, stress response, stationary phase, and sporulation"	Verified	chr9:290418-291668	290418-291668	98.7%	352.32	422.79	460.85	496.49	900.65	765.39	387.55	478.67	833.02	1.43	1.94	3.45	0.80	1.33	Matched[2916]
YIL032C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr9:291960-292316	291960-292316	98.5%	5.69	14.22	11.37	8.53	14.22	14.22	9.95	9.95	14.22	0.04	0.04	0.06	0.51	0.84	
YIL031W	ULP2	"Peptidase that deconjugates Smt3/SUMO-1 peptides from proteins, plays a role in chromosome cohesion at centromeric regions and recovery from checkpoint arrest induced by DNA damage or DNA replication defects; potential Cdc28p substrate"	Verified	chr9:292632-295736	292632-295736	99.0%	120.63	116.73	100.15	97.22	98.20	112.18	118.68	98.68	105.19	0.44	0.40	0.44	0.09	0.57	Covered/w/another[2917]
YIL030W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YIL031W."	Dubious	chr9:295564-295902	295564-295902	98.9%	152.05	184.84	116.27	110.31	166.96	113.29	168.45	113.29	140.12	0.62	0.46	0.58	0.31	NaN	Covered/w/another[2917]
YIL029W-A		"Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:299734-300105	299734-300105	99.1%	54.27	70.55	51.55	56.98	29.85	51.55	62.41	54.27	40.70	0.23	0.22	0.17	-0.42	NaN	Covered[2918]
YIL030C	SSM4	"Ubiquitin-protein ligase of the ER/nuclear envelope, required for degradation of Alpha2p and other proteins containing a Deg1 degradation signal; ssm4 mutation suppresses mRNA instability caused by an rna14 mutation"	Verified	chr9:296049-300008	296049-300008	99.0%	167.57	126.00	135.43	98.96	70.14	53.05	146.78	117.20	61.60	0.54	0.48	0.26	-0.93	-0.82	Frag<80[2918]
YIL029C		Putative protein of unknown function; deletion confers sensitivity to 4-(N-(S-glutathionylacetyl)amino) phenylarsenoxide (GSAO)	Uncharacterized	chr9:300827-301255	300827-301255	97.9%	57.15	95.26	78.59	57.15	216.71	133.36	76.21	67.87	175.03	0.28	0.28	0.73	1.37	0.56	Frag>80[2919,2920]
YIL028W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr9:302098-302496	302098-302496	98.9%	22.82	25.35	12.68	12.68	27.89	20.28	24.09	12.68	24.09	0.09	0.05	0.10	0.93	0.96	Covered[2921]
YIL027C	KRE27	Protein of unknown function; null mutant shows K1 killer toxin resistance	Verified	chr9:303677-304102	303677-304102	99.1%	575.55	506.86	468.96	409.75	523.44	267.64	541.20	439.36	395.54	2.00	1.78	1.64	-0.15	-0.67	Matched[2922]
YIL026C	IRR1	"Subunit of the cohesin complex, which is required for sister chromatid cohesion during mitosis and meiosis and interacts with centromeres and chromosome arms, essential for viability"	Verified	chr9:304475-307927	304475-307927	99.1%	111.29	95.52	98.15	103.11	55.79	49.95	103.40	100.63	52.87	0.38	0.41	0.22	-0.93	-0.31	Matched[2923]
YIL025C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:308199-308573	308199-308573	99.0%	8.08	5.39	5.39	5.39	10.77	13.47	6.73	5.39	12.12	0.02	0.02	0.05	1.17	0.00	Overlap[2924]
YIL024C		Putative protein of unknown function; non-essential gene; expression directly regulated by the metabolic and meiotic transcriptional regulator Ume6p	Uncharacterized	chr9:308600-309169	308600-309169	99.0%	58.48	47.85	62.03	31.90	104.56	33.67	53.17	46.96	69.12	0.20	0.19	0.29	0.56	0.91	Matched[2924]
YIL023C	YKE4	"Zinc transporter; localizes to the ER; null mutant is sensitive to calcofluor white, leads to zinc accumulation in cytosol; ortholog of the mouse KE4 and member of the ZIP (ZRT, IRT-like Protein) family"	Verified	chr9:309384-310424	309384-310424	98.3%	152.39	127.97	165.09	154.34	290.12	185.60	140.18	159.71	237.86	0.52	0.65	0.99	0.57	0.42	Matched[2925]
YIL022W	TIM44	"Peripheral mitochondrial membrane protein involved in mitochondrial protein import, tethers essential chaperone Ssc1p to the translocon channel at the matrix side of the inner membrane"	Verified	chr9:311163-312458	311163-312458	98.0%	335.33	357.37	346.35	334.55	292.04	310.93	346.35	340.45	301.49	1.28	1.38	1.25	-0.18	0.21	Matched[2926]
YIL021W	RPB3	"RNA polymerase II third largest subunit B44, part of central core; similar to prokaryotic alpha subunit"	Verified	chr9:312903-313859	312903-313859	98.5%	447.73	406.35	421.20	368.15	253.57	179.30	427.04	394.68	216.44	1.58	1.60	0.90	-0.87	-0.77	Matched[2927]
YIL021C-A		"Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps verified gene RPB3/YIL021W; identified by gene-trapping, expression analysis, and genome-wide homology searching"	Dubious	chr9:313197-313466	313197-313466	98.4%	478.12	372.71	402.82	338.82	244.71	154.35	425.41	370.82	199.53	1.57	1.51	0.83	-0.89	NaN	Matched[2927]
YIL020C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:313711-314049	313711-314049	98.1%	459.92	411.82	426.85	342.69	282.57	204.41	435.87	384.77	243.49	1.61	1.56	1.01	-0.66	NaN	
YIL020C	HIS6	"Phosphoribosyl-5-amino-1-phosphoribosyl-4-imidazolecarboxiamide isomerase, catalyzes the fourth step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts"	Verified	chr9:314033-314818	314033-314818	99.4%	195.74	106.18	102.35	71.64	93.39	126.65	150.96	86.99	110.02	0.56	0.35	0.46	0.34	-0.16	Matched[2928]
YIL019W	FAF1	Protein required for pre-rRNA processing and 40S ribosomal subunit assembly	Verified	chr9:315091-316131	315091-316131	98.1%	133.18	46.02	62.67	40.15	9.79	5.88	89.60	51.41	7.83	0.33	0.21	0.03	-2.71	-2.47	Matched[2929]
YIL018W	RPL2B	"Protein component of the large (60S) ribosomal subunit, identical to Rpl2Ap and has similarity to E. coli L2 and rat L8 ribosomal proteins; expression is upregulated at low temperatures"	Verified	chr9:316766-317930	316766-316769,317170-317930	41.4%	11543.38	9242.92	9862.28	8411.85	2338.38	2648.06	10393.15	9137.06	2493.22	38.37	37.09	10.33	-1.87	-2.49	Frag>80[2930,2931,2932]
YIL017C	VID28	"Protein involved in proteasome-dependent catabolite degradation of fructose-1,6-bisphosphatase (FBPase); localized to the nucleus and the cytoplasm"	Verified	chr9:318198-320963	318198-320963	99.2%	79.79	121.33	106.02	110.03	150.47	140.27	100.56	108.03	145.37	0.37	0.44	0.60	0.43	0.57	Matched[2933]
YIL016W	SNL1	Protein of unknown function proposed to be involved in nuclear pore complex biogenesis and maintenance as well as protein folding; has similarity to the mammalian BAG-1 protein	Verified	chr9:321452-321931	321452-321931	98.3%	366.75	224.72	290.43	235.31	205.64	97.52	295.73	262.87	151.58	1.09	1.07	0.63	-0.79	-0.99	Frag>80[2934,2935]
YIL015W	BAR1	"Aspartyl protease secreted into the periplasmic space of mating type a cells, helps cells find mating partners, cleaves and inactivates alpha factor allowing cells to recover from alpha-factor-induced cell cycle arrest"	Verified	chr9:322340-324103	322340-324103	99.0%	650.60	803.51	675.80	585.31	336.18	156.92	727.06	630.55	246.55	2.68	2.56	1.02	-1.35	-1.29	Matched[2936]
YIL014C-A		Putative protein of unknown function	Uncharacterized	chr9:325210-325524	325210-325524	99.1%	208.25	246.70	217.86	214.66	438.93	253.10	227.47	216.26	346.02	0.84	0.88	1.43	0.68	-0.13	Matched[2938]
YIL014W	MNT3	"Alpha-1,3-mannosyltransferase, adds the fourth and fifth alpha-1,3-linked mannose residues to O-linked glycans during protein O-glycosylation"	Verified	chr9:326101-327993	326101-327993	98.7%	170.68	154.10	154.63	130.02	138.58	83.47	162.39	142.33	111.02	0.60	0.58	0.46	-0.36	-0.50	Matched[2939]
YIL013C	PDR11	"ATP-binding cassette (ABC) transporter, multidrug transporter involved in multiple drug resistance; mediates sterol uptake when sterol biosynthesis is compromisedregulated by Pdr1p; required for anaerobic growth"	Verified	chr9:328205-332440	328205-332440	98.8%	36.33	47.56	23.90	18.88	26.77	24.14	41.94	21.39	25.45	0.15	0.09	0.11	0.25	0.81	Frag<80[2940]
YIL012W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr9:333009-333401	333009-333401	98.3%	7.77	2.59	5.18	0.00	10.35	12.94	5.18	2.59	11.65	0.02	0.01	0.05	2.17	0.76	Frag<80[2941]
YIL011W	TIR3	Cell wall mannoprotein of the Srp1p/Tip1p family of serine-alanine-rich proteins; expressed under anaerobic conditions and required for anaerobic growth	Verified	chr9:333724-334533	333724-334533	94.2%	149.34	584.28	180.79	167.69	61.57	77.29	366.81	174.24	69.43	1.35	0.71	0.29	-1.33	-0.01	Frag>80[2941,2942,2943]
YIL010W	DOT5	Nuclear thiol peroxidase which functions as an alkyl-hydroperoxide reductase during post-diauxic growth	Verified	chr9:334879-335526	334879-335526	98.6%	286.31	347.33	303.52	281.62	378.62	280.05	316.82	292.57	329.34	1.17	1.19	1.36	0.17	0.40	Matched[2944]
YIL009C-A	EST3	"Component of the telomerase holoenzyme, involved in telomere replication"	Verified	chr9:335663-336209	335663-336209	99.0%	151.41	219.73	168.03	149.56	210.49	199.42	185.57	158.79	204.95	0.69	0.64	0.85	0.37	0.78	Matched[2945]
YIL009W	FAA3	"Long chain fatty acyl-CoA synthetase, has a preference for C16 and C18 fatty acids; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery"	Verified	chr9:339341-341425	339341-341425	97.9%	234.57	207.15	196.86	171.89	107.74	99.41	220.86	184.37	103.57	0.82	0.75	0.43	-0.83	-0.24	Matched[2947]
YIL008W	URM1	"Ubiquitin-like protein with weak sequence similarity to ubiquitin; depends on the E1-like activating enzyme Uba4p; molecular function of the Urm1p pathway is unknown, but it is required for normal growth, particularly at high temperature"	Verified	chr9:342533-342832	342533-342832	98.8%	371.26	199.13	273.38	300.38	172.13	94.50	285.19	286.88	133.31	1.05	1.16	0.55	-1.11	-1.38	Matched[2948]
YIL007C	NAS2	Protein with similarity to the p27 subunit of mammalian proteasome modulator; not essential; interacts with Rpn4p	Verified	chr9:342991-343653	342991-343653	99.2%	95.81	98.85	106.46	80.60	267.66	194.66	97.33	93.53	231.16	0.36	0.38	0.96	1.31	1.04	Matched[2949]
YIL006W	YIA6	"Mitochondrial NAD+ transporter, involved in the transport of NAD+ into the mitochondria (see also YEA6); member of the mitochondrial carrier subfamily; disputed role as a pyruvate transporter; has putative mouse and human orthologs"	Verified	chr9:344059-345180	344059-345180	98.8%	66.75	67.65	56.83	67.65	99.22	78.48	67.20	62.24	88.85	0.25	0.25	0.37	0.51	1.17	Matched[2950]
YIL005W	EPS1	"ER protein with chaperone and co-chaperone activity, involved in retention of resident ER proteins; has a role in recognizing proteins targeted for ER-associated degradation (ERAD), member of the protein disulfide isomerase family"	Verified	chr9:345689-347794	345689-347794	98.8%	247.58	266.32	246.13	246.61	177.39	178.35	256.95	246.37	177.87	0.95	1.00	0.74	-0.47	-0.15	Frag>80[2951,2952]
YIL004C	BET1	Type II membrane protein required for vesicular transport between the endoplasmic reticulum and Golgi complex; v-SNARE with similarity to synaptobrevins	Verified	chr9:347943-348502	347943-348360,348492-348502	99.2%	213.74	183.21	204.35	173.81	251.32	166.76	198.47	189.08	209.04	0.73	0.77	0.87	0.14	-0.44	Matched[2952]
YIL003W	CFD1	"Highly conserved, iron-sulfur cluster binding protein localized in the cytoplasm; forms a complex with Nbp35p that is involved in iron-sulfur protein assembly in the cytosol"	Verified	chr9:349119-350000	349119-350000	98.6%	146.03	86.24	93.13	70.14	71.29	33.34	116.13	81.64	52.32	0.43	0.33	0.22	-0.64	-0.72	Matched[2953]
YIL002W-A		Putative protein of unknown function; identified by expression profiling and mass spectrometry	Uncharacterized	chr9:350298-350507	350298-350507	98.1%	834.95	723.30	723.30	674.76	868.93	606.80	779.13	699.03	737.86	2.88	2.84	3.06	0.08	NaN	Matched[2954]
YIL002C	INP51	"Phosphatidylinositol 4,5-bisphosphate 5-phosphatase, synaptojanin-like protein with an N-terminal Sac1 domain, plays a role in phosphatidylinositol 4,5-bisphosphate homeostasis and in endocytosis; null mutation confers cold-tolerant growth"	Verified	chr9:350588-353428	350588-353428	99.2%	110.68	113.16	89.75	88.68	111.39	89.39	111.92	89.22	100.39	0.41	0.36	0.42	0.17	0.30	Frag>80[2954,2955]
YIL001W		Hypothetical protein	Uncharacterized	chr9:353937-355478	353937-355478	98.8%	51.84	66.93	51.84	36.75	76.12	51.84	59.38	44.29	63.98	0.22	0.18	0.27	0.53	0.21	Matched[2956]
YIR001C	SGN1	"Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM); may have a role in mRNA translation, as suggested by genetic interactions with genes encoding proteins involved in translational initiation"	Verified	chr9:356140-356892	356140-356892	98.9%	240.44	280.74	249.85	229.70	229.70	193.43	260.59	239.77	211.56	0.96	0.97	0.88	-0.18	0.27	Matched[2958]
YIR002C	MPH1	"Member of the DEAH family of helicases, functions in an error-free DNA damage bypass pathway that involves homologous recombination, mutations confer a mutator phenotype"	Verified	chr9:357412-360393	357412-360393	99.4%	84.71	90.11	72.56	66.82	136.68	111.03	87.41	69.69	123.86	0.32	0.28	0.51	0.83	1.12	Matched[2960]
YIR003W		"Protein of unknown function; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein colocalizes with Sac1p to the actin cytoskeleton; interacts with with the SH3 domain of Abp1p"	Verified	chr9:360882-362921	360882-362921	98.3%	149.53	163.99	151.53	140.56	207.85	218.32	156.76	146.04	213.08	0.58	0.59	0.88	0.55	0.94	Matched[2961]
YIR004W	DJP1	"Cytosolic J-domain-containing protein, required for peroxisomal protein import and involved in peroxisome assembly, homologous to E. coli DnaJ"	Verified	chr9:363218-364516	363218-364516	98.2%	331.52	263.33	293.90	263.33	289.19	194.36	297.42	278.61	241.78	1.10	1.13	1.00	-0.20	-0.11	Matched[2962]
YIR005W	IST3	"Component of the U2 snRNP, required for the first catalytic step of splicing and for spliceosomal assembly; interacts with Rds3p and is required for Mer1p-activated splicing"	Verified	chr9:364886-365332	364886-365332	98.7%	81.59	104.26	68.00	79.33	140.52	88.39	92.93	73.66	114.46	0.34	0.30	0.47	0.64	0.13	Matched[2963]
YIR006C	PAN1	"Part of actin cytoskeleton-regulatory complex Pan1p-Sla1p-End3p, associates with actin patches on the cell cortex; promotes protein-protein interactions essential for endocytosis; previously thought to be a subunit of poly(A) ribonuclease"	Verified	chr9:365463-369905	365463-369905	96.2%	312.23	381.04	329.78	347.33	190.99	408.42	346.63	338.56	299.70	1.28	1.37	1.24	-0.18	0.70	Matched[2964]
YIR007W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YIR007W is a non-essential gene	Uncharacterized	chr9:370701-372995	370701-372995	98.8%	64.82	103.18	75.40	56.44	110.24	115.09	84.00	65.92	112.66	0.31	0.27	0.47	0.77	1.12	Covered/w/another[2965]
YIR008C	PRI1	"Subunit of DNA primase, which is required for DNA synthesis and double-strand break repair"	Verified	chr9:373074-374303	373074-374303	99.1%	129.62	133.72	132.08	117.31	109.93	81.22	131.67	124.70	95.57	0.49	0.51	0.40	-0.38	0.18	Covered/w/another[2965]
YIR009W	MSL1	"U2B component of U2 snRNP, involved in splicing, binds the U2 snRNA stem-loop IV in vitro; does not contain the conserved C-terminal RNA binding domain found in other family members"	Verified	chr9:374522-374857	374522-374857	98.5%	81.61	96.73	96.73	114.86	105.79	84.63	89.17	105.79	95.21	0.33	0.43	0.39	-0.15	0.22	Matched[2966]
YIR010W	DSN1	Essential component of the MIND kinetochore complex (Mtw1p Including Nnf1p-Nsl1p-Dsn1p) which joins kinetochore subunits contacting DNA to those contacting microtubules; important for chromosome segregation	Verified	chr9:375428-377158	375428-377158	97.4%	144.71	133.44	108.53	114.46	190.37	145.89	139.07	111.50	168.13	0.51	0.45	0.70	0.59	0.63	Covered/w/another[2967]
YIR011C	STS1	Protein that interacts with the karyopherin Srp1p; may have a role with Srp1p in ubiquitin-mediated protein degradation	Verified	chr9:377284-378243	377284-378243	99.3%	215.10	192.02	183.62	178.38	207.76	151.10	203.56	181.00	179.43	0.75	0.73	0.74	-0.01	0.11	Covered/w/another[2967]
YIR012W	SQT1	Essential protein involved in a late step of 60S ribosomal subunit assembly or modification; contains multiple WD repeats; interacts with Qsr1p in a two-hybrid assay	Verified	chr9:378483-379778	378483-379778	98.6%	305.31	223.90	241.90	170.66	81.42	62.63	264.61	206.28	72.02	0.98	0.84	0.30	-1.52	-1.49	Frag>80[2968,2969]
YIR013C	GAT4	Protein containing GATA family zinc finger motifs	Verified	chr9:380016-380381	380016-380381	98.8%	8.29	8.29	0.00	0.00	8.29	13.82	8.29	0.00	11.06	0.03	0.00	0.05	Inf	0.26	Frag<80[2969,2970]
YIR014W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the vacuole; expression directly regulated by the metabolic and meiotic transcriptional regulator Ume6p; YIR014W is a non-essential gene	Uncharacterized	chr9:381083-381811	381083-381811	98.6%	62.60	93.20	66.77	84.85	166.93	239.26	77.90	75.81	203.10	0.29	0.31	0.84	1.42	1.91	Matched[2971]
YIR015W	RPR2	"Subunit of nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends; not shared between RNase MRP and RNase P, in contrast to all other RNase P protein subunits"	Verified	chr9:381945-382379	381945-382379	98.6%	116.57	109.58	111.91	109.58	200.51	261.12	113.08	110.74	230.81	0.42	0.45	0.96	1.06	1.65	Covered/w/another[2971]
YIR016W		Putative protein of unknown function; expression directly regulated by the metabolic and meiotic transcriptional regulator Ume6p; YIR016W is a non-essential gene	Uncharacterized	chr9:382625-383422	382625-383422	98.4%	221.56	420.20	468.59	550.08	918.08	644.31	320.88	509.34	781.20	1.18	2.07	3.24	0.62	0.64	Matched[2972]
YIR017W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:383563-384162	383563-384162	99.2%	25.19	89.00	43.66	45.34	193.12	109.15	57.09	44.50	151.13	0.21	0.18	0.63	1.76	NaN	Frag>80[2973,2974]
YIR017C	MET28	"Transcriptional activator in the Cbf1p-Met4p-Met28p complex, participates in the regulation of sulfur metabolism"	Verified	chr9:383553-384116	383553-384116	99.2%	30.38	94.71	50.04	50.04	203.72	114.37	62.55	50.04	159.05	0.23	0.20	0.66	1.67	1.06	Frag>80[2973,2974]
YIR018W	YAP5	Basic leucine zipper (bZIP) transcription factor	Verified	chr9:384606-385343	384606-385343	98.5%	63.27	74.27	49.52	70.15	126.54	116.91	68.77	59.83	121.73	0.25	0.24	0.50	1.02	0.99	Matched[2975]
YIR018C-A		Putative protein of unknown function; identified by expression profiling and mass spectrometry	Uncharacterized	chr9:385561-385698	385561-385698	98.9%	73.30	80.64	51.31	43.98	102.63	58.64	76.97	47.65	80.64	0.28	0.19	0.33	0.76	NaN	Covered/w/another[2975]
YIR019C	MUC1	"GPI-anchored cell surface glycoprotein (flocculin) required for pseudohyphal formation, invasive growth, flocculation, and biofilms; transcriptionally regulated by the MAPK pathway (via Ste12p and Tec1p) and the cAMP pathway (via Flo8p)"	Verified	chr9:389569-393672	389569-393672	54.8%	30.67	58.23	33.34	21.78	9.78	8.45	44.45	27.56	9.11	0.16	0.11	0.04	-1.60	-0.27	Frag<80[2978]
YIR020C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:394252-394554	394252-394554	99.0%	66.68	80.01	23.34	80.01	100.01	76.68	73.34	51.67	88.35	0.27	0.21	0.37	0.77	0.65	Covered/w/another[2979]
YIR020W-A		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data"	Dubious	chr9:394914-395156	394914-395156	98.7%	25.02	29.19	33.36	58.38	45.87	45.87	27.11	45.87	45.87	0.10	0.19	0.19	0.00	NaN	Covered/w/another[2979]
YIR021W	MRS1	"Protein required for the splicing of two mitochondrial group I introns (BI3 in COB and AI5beta in COX1); forms a splicing complex, containing four subunits of Mrs1p and two subunits of the BI3-encoded maturase, that binds to the BI3 RNA"	Verified	chr9:397291-398382	397291-398382	98.8%	155.69	146.43	146.43	122.33	85.26	64.87	151.06	134.38	75.07	0.56	0.55	0.31	-0.84	-0.60	Frag>80[2980,2981]
YIR020C-B		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified ORF MRS1"	Dubious	chr9:397212-397946	397212-397946	98.8%	121.15	108.76	118.40	97.75	70.21	42.68	114.95	108.07	56.44	0.42	0.44	0.23	-0.94	NaN	Matched[2980]
YIR021W-A		Putative protein of unknown function; identified by expression profiling and mass spectrometry	Uncharacterized	chr9:398511-398723	398511-398723	98.6%	47.63	61.92	85.73	76.21	80.97	66.68	54.77	80.97	73.82	0.20	0.33	0.31	-0.13	NaN	Frag<80[2981,2982]
YIR022W	SEC11	"18kDa catalytic subunit of the Signal Peptidase Complex (SPC; Spc1p, Spc2p, Spc3p, and Sec11p) which cleaves the signal sequence of proteins targeted to the endoplasmic reticulum"	Verified	chr9:398730-399233	398730-399233	98.6%	511.15	537.31	595.67	579.57	525.24	503.10	524.23	587.62	514.17	1.94	2.39	2.13	-0.19	-0.06	Matched[2982]
YIR023W	DAL81	Positive regulator of genes in multiple nitrogen degradation pathways; contains DNA binding domain but does not appear to bind the dodecanucleotide sequence present in the promoter region of many genes involved in allantoin catabolism	Verified	chr9:399774-402686	399774-402686	98.4%	123.15	111.98	85.82	95.94	45.35	63.49	117.56	90.88	54.42	0.43	0.37	0.23	-0.74	0.18	Covered/w/another[2983]
YIR023C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:402380-402703	402380-402703	98.5%	147.22	187.94	156.62	156.62	78.31	78.31	167.58	156.62	78.31	0.62	0.64	0.32	-1.00	NaN	Covered/w/another[2983]
YIR024C		"Protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; interacts with Arh1p, a mitochondrial oxidoreductase; deletion mutant has a respiratory growth defect"	Verified	chr9:402838-403488	402838-403488	99.6%	87.91	78.66	111.05	94.08	209.76	118.76	83.29	102.56	164.26	0.31	0.42	0.68	0.68	0.77	Covered/w/another[2983]
YIR025W	MND2	Subunit of the anaphase-promoting complex (APC); needed for meiotic nuclear division	Verified	chr9:403656-404762	403656-404762	98.2%	37.70	41.38	39.54	24.83	68.97	51.50	39.54	32.19	60.23	0.15	0.13	0.25	0.90	0.70	Matched[2984]
YIR026C	YVH1	"Protein phosphatase involved in vegetative growth at low temperatures, sporulation, and glycogen accumulation; transcription induced by low temperature and nitrogen starvation; member of the dual-specificity family of protein phosphatases"	Verified	chr9:404870-405964	404870-405964	98.9%	144.01	75.70	108.93	82.16	21.23	12.92	109.85	95.55	17.08	0.41	0.39	0.07	-2.48	-3.13	Matched[2985]
YIR027C	DAL1	"Allantoinase, converts allantoin to allantoate in the first step of allantoin degradation; expression sensitive to nitrogen catabolite repression"	Verified	chr9:406257-407639	406257-407639	98.9%	7.31	2.19	2.19	2.92	29.98	31.44	4.75	2.56	30.71	0.02	0.01	0.13	3.58	1.24	Matched[2986]
YIR028W	DAL4	"Allantoin permease; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation"	Verified	chr9:408465-410372	408465-410372	98.9%	6.36	4.77	5.83	4.77	6.36	7.95	5.57	5.30	7.16	0.02	0.02	0.03	0.43	1.39	Frag<80[2987]
YIR029W	DAL2	"Allantoicase, converts allantoate to urea and ureidoglycolate in the second step of allantoin degradation; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation"	Verified	chr9:410804-411835	410804-411835	98.4%	26.60	27.59	24.63	36.45	59.11	46.30	27.09	30.54	52.71	0.10	0.12	0.22	0.79	0.90	Matched[2988]
YIR030C	DCG1	"Protein of unknown function, expression is sensitive to nitrogen catabolite repression and regulated by Dal80p; contains transmembrane domain"	Verified	chr9:412033-412767	412033-412767	99.3%	8.22	17.82	19.19	20.56	19.19	5.48	13.02	19.87	12.33	0.05	0.08	0.05	-0.69	-1.43	
YIR030W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:412896-413279	412896-413279	99.2%	89.27	105.02	47.26	39.38	102.40	31.51	97.14	43.32	66.95	0.36	0.18	0.28	0.63	NaN	Covered/w/another[2989]
YIR031C	DAL7	"Malate synthase, role in allantoin degradation unknown; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation"	Verified	chr9:413012-414676	413012-414676	99.1%	69.10	92.73	61.82	42.43	84.85	45.46	80.92	52.13	65.16	0.30	0.21	0.27	0.32	0.53	Matched[2989]
YIR032C	DAL3	"Ureidoglycolate hydrolase, converts ureidoglycolate to glyoxylate and urea in the third step of allantoin degradation; expression sensitive to nitrogen catabolite repression"	Verified	chr9:415027-415614	415027-415614	98.9%	34.38	39.53	17.19	25.78	56.72	55.00	36.95	21.49	55.86	0.14	0.09	0.23	1.38	0.77	Matched[2990]
YIR033W	MGA2	"ER membrane protein involved in regulation of OLE1 transcription, acts with homolog Spt23p; inactive ER form dimerizes and one subunit is then activated by ubiquitin/proteasome-dependent processing followed by nuclear targeting"	Verified	chr9:416121-419462	416121-419462	98.6%	129.32	389.49	128.72	125.98	95.63	86.82	259.40	127.35	91.22	0.96	0.52	0.38	-0.48	-0.08	Covered/w/another[2991]
YIR034C	LYS1	"Saccharopine dehydrogenase (NAD+, L-lysine-forming), catalyzes the conversion of saccharopine to L-lysine, which is the final step in the lysine biosynthesis pathway"	Verified	chr9:419612-420733	419612-420733	98.7%	262.00	466.18	266.52	226.76	284.58	272.84	364.09	246.64	278.71	1.34	1.00	1.15	0.18	0.59	Covered/w/another[2991]
YIR035C		Putative cytoplasmic protein of unknown function	Uncharacterized	chr9:421023-421787	421023-421787	98.8%	326.67	296.25	227.48	173.25	167.96	93.90	311.46	200.36	130.93	1.15	0.81	0.54	-0.61	-0.52	Matched[2992]
YIR036W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr9:422632-423033	422632-423033	98.8%	125.87	183.76	103.21	105.73	342.35	276.90	154.81	104.47	309.63	0.57	0.42	1.28	1.57	NaN	Matched[2993]
YIR036C		Putative benzil reductase;(GFP)-fusion protein localizes to the cytoplasm and is induced by the DNA-damaging agent MMS; sequence similarity with short-chain dehydrogenase/reductases; null mutant has increased spontaneous Rad52 foci	Uncharacterized	chr9:422071-422862	422071-422862	98.5%	257.54	295.98	283.17	246.01	636.81	451.02	276.76	264.59	543.91	1.02	1.07	2.25	1.04	1.34	Matched[2993]
YIR037W	HYR1	Thiol peroxidase that functions as a hydroperoxide receptor to sense intracellular hydroperoxide levels and transduce a redox signal to the Yap1p transcription factor	Verified	chr9:423125-423616	423125-423616	98.5%	1091.75	1461.17	1054.60	1153.67	2230.97	1642.79	1276.46	1104.14	1936.88	4.71	4.48	8.03	0.81	0.68	Covered/w/another[2994]
YIR038C	GTT1	"ER associated glutathione S-transferase capable of homodimerization; expression induced during the diauxic shift and throughout stationary phase; functional overlap with Gtt2p, Grx1p, and Grx2p"	Verified	chr9:423806-424510	423806-424510	98.9%	526.54	879.48	535.15	553.80	1855.09	1439.02	703.01	544.48	1647.06	2.60	2.21	6.82	1.60	1.41	Matched[2994]
YIR039C	YPS6	Putative GPI-anchored aspartic protease	Verified	chr9:430494-432107	430494-432107	76.2%	46.35	81.32	68.31	79.69	556.21	409.84	63.83	74.00	483.03	0.24	0.30	2.00	2.71	2.61	Frag>80[2995]
YIR040C		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data"	Dubious	chr9:433385-433717	433385-433717	6.2%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.02	
YIR041W	PAU15	Hypothetical protein	Uncharacterized	chr9:433925-434299	433925-434299	4.8%	0.00	0.00	0.00	0.00	55.17	0.00	0.00	0.00	27.59	0.00	0.00	0.11	Inf	0.99	
YIR042C		Putative protein of unknown function; YIR042C is a non-essential gene	Uncharacterized	chr9:435270-435980	435270-435980	99.4%	107.57	101.90	70.77	50.95	41.04	32.55	104.74	60.86	36.80	0.39	0.25	0.15	-0.73	-0.76	Covered[2996]
YJL225W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the uncharacterized gene YJL225C"	Dubious	chr10:829-1311	829-1311	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YJL225C		Putative protein of unknown function; similarity to DNA helicases that are also encoded within subtelomeric Y' elements and induced in telomerase deficient survivors	Uncharacterized	chr10:466-6130	466-4581,4970-6130	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.23	
YJL223C	PAU1	"Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme"	Verified	chr10:8776-9138	8776-9138	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.66	
YJL222W-B		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr10:9346-9483	9346-9483	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YJL222W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr10:9452-9679	9452-9679	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YJL222W	VTH2	"Putative membrane glycoprotein with strong similarity to Vth1p and Pep1p/Vps10p, may be involved in vacuolar protein sorting"	Verified	chr10:11475-16124	11475-16124	0.1%	0.00	0.00	250.00	0.00	0.00	250.00	0.00	125.00	125.00	0.00	0.51	0.52	0.00	0.16	
YJL220W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YJL221C/FSP2"	Dubious	chr10:18243-18695	18243-18695	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.49	
YJL221C	FSP2	"Protein of unknown function, expression is induced during nitrogen limitation"	Verified	chr10:16767-18536	16767-18536	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.34	
YJL219W	HXT9	"Putative hexose transporter that is nearly identical to Hxt11p, has similarity to major facilitator superfamily (MFS) transporters, expression of HXT9 is regulated by transcription factors Pdr1p and Pdr3p"	Verified	chr10:19497-21200	19497-21200	16.5%	3.55	3.55	3.55	3.55	10.64	0.00	3.55	3.55	5.32	0.01	0.01	0.02	0.58	0.03	
YJL218W		"Putative protein of unknown function, similar to bacterial galactoside O-acetyltransferases; induced by oleate in an OAF1/PIP2-dependent manner; promoter contains an oleate response element consensus sequence; non-essential gene"	Uncharacterized	chr10:21973-22563	21973-22563	98.7%	49.74	42.88	29.16	32.59	48.02	20.58	46.31	30.87	34.30	0.17	0.13	0.14	0.15	0.09	Matched[2997]
YJL217W		"Cytoplasmic protein of unknown function; expression induced by calcium shortage and via the copper sensing transciption factor Mac1p during conditons of copper deficiency; mRNA is cell cycle regulated, peaking in G1 phase"	Uncharacterized	chr10:23133-23729	23133-23729	98.6%	285.43	304.12	316.01	314.31	905.56	521.59	294.78	315.16	713.58	1.09	1.28	2.96	1.18	1.17	Frag>80[2998,2999]
YJL216C		"Protein of unknown function, similar to alpha-D-glucosidases; transcriptionally activated by both Pdr8p and Yrm1p, along with transporters and other genes involved in the pleiotropic drug resistance (PDR) phenomenon"	Uncharacterized	chr10:24341-26086	24341-26086	98.4%	29.69	33.18	31.43	31.43	9.31	11.06	31.43	31.43	10.19	0.12	0.13	0.04	-1.63	-1.07	Matched[3000]
YJL215C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr10:26412-26771	26412-26771	98.6%	30.99	28.18	11.27	25.36	16.91	19.72	29.58	18.31	18.31	0.11	0.07	0.08	0.00	-0.07	
YJL214W	HXT8	"Protein of unknown function with similarity to hexose transporter family members, expression is induced by low levels of glucose and repressed by high levels of glucose"	Verified	chr10:26887-28596	26887-28596	98.5%	19.59	23.74	16.62	21.96	24.93	20.77	21.66	19.29	22.85	0.08	0.08	0.09	0.24	-0.09	Frag<80[3001]
YJL213W		"Protein of unknown function that may interact with ribosomes; periodically expressed during the yeast metabolic cycle; phosphorylated in vitro by the mitotic exit network (MEN) kinase complex, Dbf2p/Mob1p"	Verified	chr10:32163-33158	32163-33158	98.5%	62.16	158.97	58.08	64.20	243.55	207.88	110.56	61.14	225.71	0.41	0.25	0.94	1.88	1.97	Matched[3003]
YJL212C	OPT1	Proton-coupled oligopeptide transporter of the plasma membrane; also transports glutathione and phytochelatin; member of the OPT family	Verified	chr10:33850-36249	33850-36249	98.6%	99.30	161.83	108.59	89.58	60.85	71.83	130.57	99.09	66.34	0.48	0.40	0.27	-0.58	0.11	Matched[3004]
YJL210W	PEX2	"RING-finger peroxin, peroxisomal membrane protein with a C-terminal zinc-binding RING domain, forms translocation subcomplex with Pex10p and Pex12p which functions in peroxisomal matrix protein import"	Verified	chr10:36919-37734	36919-37734	98.7%	149.06	223.59	218.62	186.33	362.71	186.33	186.33	202.47	274.52	0.69	0.82	1.14	0.44	0.22	Frag>80[3005,3006]
YJL211C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YJL210W/PEX2"	Dubious	chr10:36757-37200	36757-37200	98.2%	98.64	153.70	135.35	135.35	199.58	110.11	126.17	135.35	154.85	0.47	0.55	0.64	0.19	0.91	Frag<80[3005,3006]
YJL209W	CBP1	Mitochondrial protein that interacts with the 5'-untranslated region of the COB mRNA and has a role in its stability and translation; found in a complex at the inner membrane along with Pet309p	Verified	chr10:38005-39969	38005-39969	98.9%	86.92	91.03	86.40	76.12	74.58	55.03	88.98	81.26	64.80	0.33	0.33	0.27	-0.33	-0.80	Covered/w/another[3007]
YJL208C	NUC1	"Major mitochondrial nuclease, has RNAse and DNA endo- and exonucleolytic activities; has roles in mitochondrial recombination, apoptosis and maintenance of polyploidy"	Verified	chr10:40194-41183	40194-41183	98.9%	206.27	124.58	171.55	118.45	37.78	31.66	165.43	145.00	34.72	0.61	0.59	0.14	-2.06	-2.15	Covered/w/another[3007]
YJL207C	LAA1	AP-1 accessory protein; colocalizes with clathrin to the late-Golgi apparatus; involved in TGN-endosome transport; physically interacts with AP-1; similar to the mammalian p200; may interact with ribosomes; YJL207C is a non-essential gene	Verified	chr10:41389-47433	41389-47433	99.2%	138.44	134.60	110.59	109.25	75.06	62.21	136.52	109.92	68.64	0.50	0.45	0.28	-0.68	-1.17	Covered/w/another[3007]
YJL206C		"Putative protein of unknown function; similar to transcriptional regulators from the Zn[2]-Cys[6] binuclear cluster protein family; mRNA is weakly cell cycle regulated, peaking in S phase; induced rapidly upon MMS treatment"	Uncharacterized	chr10:47659-49935	47659-49935	99.1%	33.69	29.70	29.70	28.37	58.51	48.76	31.70	29.04	53.64	0.12	0.12	0.22	0.89	1.43	Covered/w/another[3007]
YJL205C	NCE101	"Protein of unknown function, involved in secretion of proteins that lack classical secretory signal sequences"	Verified	chr10:50139-50443	50139-50268,50412-50443	98.7%	193.90	181.39	187.65	218.92	469.12	293.98	187.65	203.28	381.55	0.69	0.83	1.58	0.91	NaN	Covered/w/another[3007]
YJL204C	RCY1	F-box protein involved in recycling plasma membrane proteins internalized by endocytosis; localized to sites of polarized growth	Verified	chr10:50629-53151	50629-53151	99.3%	65.87	74.65	65.47	71.46	67.86	56.69	70.26	68.46	62.28	0.26	0.28	0.26	-0.14	0.47	Covered/w/another[3007]
YJL203W	PRP21	"Subunit of the SF3a splicing factor complex, required for spliceosome assembly"	Verified	chr10:53341-54183	53341-54183	98.4%	81.98	101.27	88.01	85.60	96.45	63.90	91.63	86.80	80.17	0.34	0.35	0.33	-0.11	-0.07	Covered/w/another[3008]
YJL202C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps 3' end of essential PRP21 gene encoding a subunit of the SF3a splicing factor complex"	Dubious	chr10:53943-54290	53943-54290	98.4%	93.46	128.51	93.46	81.78	105.15	52.57	110.99	87.62	78.86	0.41	0.36	0.33	-0.15	-0.05	Covered/w/another[3008]
YJL201W	ECM25	Non-essential protein of unknown function; promoter contains a consensus binding sequence for factor Abf1p	Verified	chr10:54379-56178	54379-56178	99.1%	118.32	118.32	127.86	95.89	107.11	64.49	118.32	111.87	85.80	0.44	0.45	0.36	-0.38	0.41	Covered/w/another[3008]
YJL200C	ACO2	"Putative mitochondrial aconitase isozyme; similarity to Aco1p, an aconitase required for the TCA cycle; expression induced during growth on glucose, by amino acid starvation via Gcn4p, and repressed on ethanol"	Verified	chr10:56444-58813	56444-58813	99.0%	179.00	171.33	141.92	112.09	14.92	8.10	175.16	127.00	11.51	0.65	0.52	0.05	-3.46	-2.40	Matched[3009]
YJL199C	MBB1	"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; protein detected in large-scale protein-protein interaction studies"	Dubious	chr10:59855-60181	59855-60181	99.0%	61.80	139.05	58.71	71.07	342.99	185.40	100.42	64.89	264.19	0.37	0.26	1.09	2.03	0.80	Matched[3010]
YJL198W	PHO90	"Low-affinity phosphate transporter; deletion of pho84, pho87, pho89, pho90, and pho91 causes synthetic lethality; transcription independent of Pi and Pho4p activity; overexpression results in vigorous growth"	Verified	chr10:60843-63488	60843-63488	98.4%	145.53	137.47	115.96	77.18	13.06	5.76	141.50	96.57	9.41	0.52	0.39	0.04	-3.36	-3.13	Matched[3012]
YJL197W	UBP12	"Ubiquitin carboxyl-terminal hydrolase, ubiquitin-specific protease present in the nucleus and cytoplasm that cleaves ubiquitin from ubiquitinated proteins"	Verified	chr10:63804-67568	63804-67568	98.7%	119.71	103.30	90.12	90.12	52.46	74.25	111.50	90.12	63.35	0.41	0.37	0.26	-0.51	0.03	Matched[3013]
YJL197C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified gene YJL197C/UBP12"	Dubious	chr10:65804-66085	65804-66085	98.8%	96.88	93.29	89.70	71.76	46.64	57.41	95.08	80.73	52.03	0.35	0.33	0.22	-0.63	NaN	Covered/w/another[3013]
YJL196C	ELO1	"Elongase I, medium-chain acyl elongase, catalyzes carboxy-terminal elongation of unsaturated C12-C16 fatty acyl-CoAs to C16-C18 fatty acids"	Verified	chr10:67849-68781	67849-68781	98.9%	1061.34	2033.79	1007.14	1054.84	958.35	756.71	1547.57	1030.99	857.53	5.71	4.18	3.55	-0.27	-0.14	Matched[3014]
YJL194W	CDC6	"Essential ATP-binding protein required for DNA replication, component of the pre-replicative complex (pre-RC) which requires ORC to associate with chromatin and is in turn required for Mcm2-7p DNA association; homologous to S. pombe Cdc18p"	Verified	chr10:69337-70878	69337-70878	98.8%	74.80	94.48	59.05	62.99	43.96	39.37	84.64	61.02	41.66	0.31	0.25	0.17	-0.55	0.13	Covered/w/another[3015]
YJL195C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YJL194W/CDC6"	Dubious	chr10:69240-69941	69240-69941	98.7%	67.80	59.15	53.38	50.49	27.41	24.52	63.47	51.93	25.97	0.23	0.21	0.11	-1.00	-0.20	Covered/w/another[3015]
YJL193W		"Putative protein of unknown function, predicted to encode a triose phosphate transporter subfamily member based on phylogenetic analysis; similar to YOR307C/SLY41; deletion mutant has a respiratory growth defect"	Uncharacterized	chr10:71365-72573	71365-72573	99.2%	109.24	133.43	114.25	85.89	88.39	53.37	121.33	100.07	70.88	0.45	0.41	0.29	-0.50	-1.06	Covered/w/another[3015]
YJL192C	SOP4	"ER-membrane protein; suppressor of pma1-7, deletion of SOP4 slows down the export of wild-type Pma1p and Pma1-7 from the ER"	Verified	chr10:72709-73413	72709-73413	99.1%	683.05	746.06	708.83	738.90	661.58	505.49	714.56	723.87	583.53	2.64	2.94	2.42	-0.31	-0.37	Matched[3016]
YJL191W	RPS14B	"Ribosomal protein 59 of the small subunit, required for ribosome assembly and 20S pre-rRNA processing; mutations confer cryptopleurine resistance; nearly identical to Rps14Ap and similar to E. coli S11 and rat S14 ribosomal proteins"	Verified	chr10:73786-74610	73786-73795,74204-74610	62.6%	1129.55	582.00	819.40	382.90	390.56	153.16	855.78	601.15	271.86	3.16	2.44	1.13	-1.14	-1.11	Matched[3017]
YJL190C	RPS22A	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps22Bp and has similarity to E. coli S8 and rat S15a ribosomal proteins	Verified	chr10:74909-75301	74909-75301	85.4%	11684.29	9447.51	10731.20	9280.71	1775.13	1408.79	10565.90	10005.96	1591.96	39.00	40.62	6.60	-2.65	-3.98	Matched[3018]
YJL189W	RPL39	"Protein component of the large (60S) ribosomal subunit, has similarity to rat L39 ribosomal protein; required for ribosome biogenesis; exhibits genetic interactions with SIS1 and PAB1"	Verified	chr10:75932-76473	75932-75937,76324-76473	98.4%	13945.15	10726.04	11560.14	9865.87	4750.48	3538.42	12335.60	10713.01	4144.45	45.54	43.49	17.17	-1.37	-2.76	Matched[3019]
YJL188C	BUD19	"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; 88% of ORF overlaps the verified gene RPL39; diploid mutant displays a weak budding pattern phenotype in a systematic assay"	Dubious	chr10:76201-76509	76201-76509	99.0%	8637.26	6761.44	7313.73	6062.09	2921.57	2215.69	7699.35	6687.91	2568.63	28.42	27.15	10.64	-1.38	-0.86	Matched[3019]
YJL187C	SWE1	Protein kinase that regulates the G2/M transition by inhibition of Cdc28p kinase activity; localizes to the nucleus and to the daughter side of the mother-bud neck; homolog of S. pombe Wee1p; potential Cdc28p substrate	Verified	chr10:76802-79261	76802-79261	99.0%	121.90	122.31	119.44	98.51	43.51	42.28	122.11	108.98	42.89	0.45	0.44	0.18	-1.35	-0.53	Covered[3020]
YJL186W	MNN5	"Alpha-1,2-mannosyltransferase, responsible for addition of the second alpha-1,2-linked mannose of the branches on the mannan backbone of oligosaccharides, localizes to an early Golgi compartment"	Verified	chr10:80153-81913	80153-81913	98.8%	373.02	299.45	358.66	331.64	192.55	159.79	336.24	345.15	176.17	1.24	1.40	0.73	-0.97	-0.49	Matched[3021]
YJL185C		"Putative protein of unknown function; mRNA is weakly cell cycle regulated, peaking in G2 phase; YJL185C is a non-essential gene"	Uncharacterized	chr10:82093-82974	82093-82974	98.8%	69.97	76.85	61.94	60.79	205.32	136.50	73.41	61.37	170.91	0.27	0.25	0.71	1.48	1.10	Matched[3022]
YJL184W	GON7	"Protein proposed to be involved in the modification of N-linked oligosaccharides, osmotic stress response, telomere uncapping and elongation, transcription; component of the EKC/KEOPS protein complex with Kae1p, Cgi121p, Pcc1p, and Bud32p"	Verified	chr10:83446-83817	83446-83817	97.7%	278.01	267.00	300.03	192.68	275.26	209.20	272.51	246.36	242.23	1.01	1.00	1.00	-0.02	-0.18	Covered/w/another[3023]
YJL183W	MNN11	"Subunit of a Golgi mannosyltransferase complex that also contains Anp1p, Mnn9p, Mnn10p, and Hoc1p, and mediates elongation of the polysaccharide mannan backbone; has homology to Mnn10p"	Verified	chr10:84066-85334	84066-85334	98.8%	425.82	363.62	383.56	367.61	263.95	173.04	394.72	375.59	218.49	1.46	1.52	0.91	-0.78	-0.40	Matched[3023]
YJL181W		Putative protein of unknown function; expression is cell-cycle regulated as shown by microarray analysis	Uncharacterized	chr10:85658-87493	85658-87493	99.0%	88.01	92.42	75.36	64.36	79.76	51.16	90.22	69.86	65.46	0.33	0.28	0.27	-0.09	-0.04	Matched[3024]
YJL182C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized ORF YJL181W"	Dubious	chr10:85433-85750	85433-85750	98.8%	9.55	6.37	25.46	15.91	15.91	31.83	7.96	20.69	23.87	0.03	0.08	0.10	0.21	-0.24	Covered/w/another[3024]
YJL180C	ATP12	Conserved protein required for assembly of alpha and beta subunits into the F1 sector of mitochondrial F1F0 ATP synthase; mutation of human ATP12 reduces active ATP synthase levels and is associated with the disorder ATPAF2 deficiency	Verified	chr10:87581-88558	87581-88558	99.0%	243.67	235.41	241.60	214.76	211.66	133.19	239.54	228.18	172.42	0.88	0.93	0.71	-0.40	-0.25	Matched[3025]
YJL179W	PFD1	"Subunit of heterohexameric prefoldin, which binds cytosolic chaperonin and transfers target proteins to it; involved in the biogenesis of actin and of alpha- and gamma-tubulin"	Verified	chr10:88785-89114	88785-89114	98.7%	411.57	273.36	297.93	254.93	211.93	113.64	342.46	276.43	162.78	1.26	1.12	0.67	-0.76	-0.78	Matched[3026]
YJL178C	ATG27	"Type II membrane protein involved in autophagy; binds phosphatidylinositol 3-phosphate, required for the cytoplasm-to-vacuole targeting (Cvt) pathway"	Verified	chr10:89280-90095	89280-90095	99.1%	471.19	445.22	426.67	396.99	419.25	301.76	458.21	411.83	360.51	1.69	1.67	1.49	-0.19	-0.13	Frag>80[3026,3027,3028]
YJL177W	RPL17B	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Ap and has similarity to E. coli L22 and rat L17 ribosomal proteins"	Verified	chr10:90784-91655	90784-91092,91410-91655	65.4%	4380.43	3738.11	3925.57	3214.33	736.04	534.80	4059.27	3569.95	635.42	14.98	14.49	2.63	-2.49	-2.65	Matched[3029]
YJL175W		"Dubious open reading frame unlikely to encode a functional protein; deletion confers resistance to cisplatin, hypersensitivity to 5-fluorouracil, and growth defect at high pH with high calcium; overlaps gene for SWI3 transcription factor"	Dubious	chr10:94047-94559	94047-94559	99.2%	78.63	74.70	92.39	78.63	60.94	55.04	76.66	85.51	57.99	0.28	0.35	0.24	-0.56	0.37	Covered/w/another[3030]
YJL176C	SWI3	"Subunit of the SWI/SNF chromatin remodeling complex, which regulates transcription by remodeling chromosomes; required for transcription of many genes, including ADH1, ADH2, GAL1, HO, INO1 and SUC2"	Verified	chr10:92051-94528	92051-94528	99.3%	140.23	129.25	136.57	114.21	110.56	102.43	134.74	125.39	106.49	0.50	0.51	0.44	-0.24	0.04	Matched[3030]
YJL174W	KRE9	"Glycoprotein involved in cell wall beta-glucan assembly; null mutation leads to severe growth defects, aberrant multibudded morphology, and mating defects"	Verified	chr10:95090-95920	95090-95920	98.9%	676.36	687.31	701.91	608.24	1058.34	862.49	681.84	655.08	960.41	2.52	2.66	3.98	0.55	0.99	Matched[3031]
YJL173C	RFA3	"Subunit of heterotrimeric Replication Protein A (RPA), which is a highly conserved single-stranded DNA binding protein involved in DNA replication, repair, and recombination"	Verified	chr10:96159-96527	96159-96527	99.2%	480.87	303.28	431.69	346.99	423.50	204.92	392.08	389.34	314.21	1.45	1.58	1.30	-0.31	-0.39	Matched[3032]
YJL172W	CPS1	Vacuolar carboxypeptidase yscS; expression is induced under low-nitrogen conditions	Verified	chr10:97731-99461	97731-99461	99.0%	489.25	603.09	416.27	434.95	425.61	512.60	546.17	425.61	469.11	2.02	1.73	1.94	0.14	0.68	Matched[3033]
YJL171C		"GPI-anchored cell wall protein of unknown function; induced in response to cell wall damaging agents and by mutations in genes involved in cell wall biogenesis; sequence similarity to YBR162C/TOS1, a covalently bound cell wall protein"	Verified	chr10:99698-100888	99698-100888	98.8%	471.69	661.21	448.74	452.14	697.76	679.91	566.45	450.44	688.83	2.09	1.83	2.85	0.61	0.76	Frag>80[3034]
YJL170C	ASG7	Protein that regulates signaling from a G protein beta subunit Ste4p and its relocalization within the cell; specific to a-cells and induced by alpha-factor	Verified	chr10:101144-101773	101144-101773	99.0%	125.12	186.07	205.32	155.59	261.46	141.16	155.59	180.46	201.31	0.57	0.73	0.83	0.16	0.06	Matched[3035]
YJL169W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YJL168C/SET2"	Dubious	chr10:102093-102461	102093-102461	99.2%	213.07	199.41	193.94	161.17	161.17	98.34	206.24	177.56	129.75	0.76	0.72	0.54	-0.45	-0.01	Covered/w/another[3036]
YJL168C	SET2	"Histone methyltransferase with a role in transcriptional elongation, methylates a lysine residue of histone H3; associates with the C-terminal domain of Rpo21p; histone methylation activity is regulated by phosphorylation status of Rpo21p"	Verified	chr10:102221-104422	102221-104422	99.3%	158.20	168.71	145.39	112.02	109.73	85.04	163.45	128.71	97.39	0.60	0.52	0.40	-0.40	0.02	Matched[3036]
YJL167W	ERG20	"Farnesyl pyrophosphate synthetase, has both dimethylallyltranstransferase and geranyltranstransferase activities; catalyzes the formation of C15 farnesyl pyrophosphate units for isoprenoid and sterol biosynthesis"	Verified	chr10:105008-106066	105008-106066	98.7%	1623.03	1468.00	1557.96	1500.54	1219.19	1090.00	1545.52	1529.25	1154.59	5.71	6.21	4.78	-0.41	-0.07	Frag>80[3037,3038,3039]
YJL166W	QCR8	"Subunit 8 of ubiquinol cytochrome-c reductase complex, which is a component of the mitochondrial inner membrane electron transport chain; oriented facing the intermembrane space; expression is regulated by Abf1p and Cpf1p"	Verified	chr10:106428-106712	106428-106712	98.7%	1042.09	1020.75	1379.96	1561.35	4278.60	2816.83	1031.42	1470.66	3547.72	3.81	5.97	14.70	1.27	0.52	Matched[3039]
YJL165C	HAL5	"Putative protein kinase; overexpression increases sodium and lithium tolerance, whereas gene disruption increases cation and low pH sensitivity and impairs potassium uptake, suggesting a role in regulation of Trk1p and/or Trk2p transporters"	Verified	chr10:106888-109455	106888-109455	99.2%	127.24	116.24	123.70	107.99	237.59	209.31	121.74	115.85	223.45	0.45	0.47	0.93	0.95	1.30	Matched[3040]
YJL164C	TPK1	cAMP-dependent protein kinase catalytic subunit; promotes vegetative growth in response to nutrients via the Ras-cAMP signaling pathway; inhibited by regulatory subunit Bcy1p in the absence of cAMP; partially redundant with Tpk2p and Tpk3p	Verified	chr10:109960-111153	109960-111153	99.3%	227.66	312.83	365.11	338.12	871.03	620.60	270.25	351.61	745.81	1.00	1.43	3.09	1.08	1.22	Matched[3041]
YJL163C		Putative protein of unknown function	Uncharacterized	chr10:111662-113329	111662-113329	99.0%	59.95	91.45	89.02	69.64	288.27	211.36	75.70	79.33	249.81	0.28	0.32	1.04	1.65	1.85	Matched[3042]
YJL162C	JJJ2	"Protein of unknown function, contains a J-domain, which is a region with homology to the E. coli DnaJ protein"	Verified	chr10:113874-115625	113874-115625	98.7%	73.41	72.83	52.60	41.62	26.01	34.68	73.12	47.11	30.35	0.27	0.19	0.13	-0.63	-0.48	Matched[3043]
YJL161W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr10:117241-117783	117241-117783	98.9%	67.03	147.09	91.23	119.16	1333.13	787.59	107.06	105.20	1060.36	0.40	0.43	4.39	3.33	2.66	Matched[3044]
YJL160C		"Putative protein of unknown function; member of the PIR (proteins with internal repeats) family of cell wall proteins; non-essential gene that is required for sporulation; mRNA is weakly cell cycle regulated, peaking in mitosis"	Uncharacterized	chr10:117958-118821	117958-118821	98.8%	25.78	19.92	16.41	11.72	23.44	7.03	22.85	14.06	15.24	0.08	0.06	0.06	0.12	1.62	Matched[3045]
YJL159W	HSP150	"O-mannosylated heat shock protein that is secreted and covalently attached to the cell wall via beta-1,3-glucan and disulfide bridges; required for cell wall stability; induced by heat shock, oxidative stress, and nitrogen limitation"	Verified	chr10:120445-121686	120445-121686	72.3%	3717.51	3668.48	3884.66	2951.94	7194.32	6760.83	3692.99	3418.30	6977.57	13.63	13.88	28.91	1.03	1.47	Matched[3046]
YJL158C	CIS3	Mannose-containing glycoprotein constituent of the cell wall; member of the PIR (proteins with internal repeats) family	Verified	chr10:122261-122944	122261-122944	91.9%	2908.90	2519.03	2810.24	2531.76	1134.60	749.50	2713.96	2671.00	942.05	10.02	10.84	3.90	-1.50	-1.63	Matched[3047]
YJL157C	FAR1	"Cyclin-dependent kinase inhibitor that mediates cell cycle arrest in response to pheromone; also forms a complex with Cdc24p, Ste4p, and Ste18p that may specify the direction of polarized growth during mating; potential Cdc28p substrate"	Verified	chr10:123832-126324	123832-126324	99.2%	487.54	540.10	439.03	375.97	84.09	28.70	513.82	407.50	56.39	1.90	1.65	0.23	-2.85	-3.32	Covered/w/another[3048]
YJL156W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr10:126600-126821	126600-126821	98.7%	191.63	209.89	219.01	159.70	269.20	123.19	200.76	189.35	196.20	0.74	0.77	0.81	0.05	-0.06	Covered/w/another[3048]
YJL156C	SSY5	"Probable serine protease of the SPS plasma membrane amino acid sensor system (Ssy1p-Ptr3p-Ssy5p), which senses external amino acid concentration and transmits intracellular signals that regulate expression of amino acid permease genes"	Verified	chr10:126886-128949	126886-128949	99.1%	110.44	124.12	84.05	97.73	94.31	75.26	117.28	90.89	84.78	0.43	0.37	0.35	-0.10	-0.02	Covered/w/another[3048]
YJL155C	FBP26	"Fructose-2,6-bisphosphatase, required for glucose metabolism"	Verified	chr10:129282-130640	129282-130640	99.3%	85.23	114.88	108.95	98.57	352.78	239.38	100.05	103.76	296.08	0.37	0.42	1.23	1.51	1.26	Matched[3049]
YJL154C	VPS35	"Endosomal subunit of membrane-associated retromer complex required for retrograde transport; receptor that recognizes retrieval signals on cargo proteins, forms subcomplex with Vps26p and Vps29p that selects cargo proteins for retrieval"	Verified	chr10:131098-133932	131098-133932	99.1%	204.03	198.69	203.68	194.77	299.11	254.95	201.36	199.23	277.03	0.74	0.81	1.15	0.48	0.79	Frag>80[3050,3051]
YJL153C	INO1	"Inositol 1-phosphate synthase, involved in synthesis of inositol phosphates and inositol-containing phospholipids; transcription is coregulated with other phospholipid biosynthetic genes by Ino2p and Ino4p, which bind the UASINO DNA element"	Verified	chr10:134329-135930	134329-135930	98.9%	22.10	24.63	9.47	12.63	49.25	32.84	23.36	11.05	41.05	0.09	0.04	0.17	1.89	1.38	Matched[3052]
YJL152W		"Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr10:136171-136530	136171-136530	98.2%	791.99	961.70	825.93	743.90	1600.94	992.81	876.84	784.91	1296.88	3.24	3.19	5.37	0.72	1.16	Matched[3053]
YJL151C	SNA3	"Integral membrane protein localized to vacuolar intralumenal vesicles, computational analysis of large-scale protein-protein interaction data suggests a possible role in either cell wall synthesis or protein-vacuolar targeting"	Verified	chr10:136369-136770	136369-136770	98.5%	1441.77	1835.67	1426.62	1292.79	2633.56	1823.04	1638.72	1359.71	2228.30	6.05	5.52	9.23	0.71	0.80	Matched[3053]
YJL150W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr10:137120-137422	137120-137422	99.2%	3.33	19.96	6.65	13.30	9.98	13.30	11.64	9.98	11.64	0.04	0.04	0.05	0.22	0.68	Overlap[3054]
YJL149W		Putative SCF ubiquitin ligase F-box protein; interacts physically with both Cdc53p and Skp1 and genetically with CDC34; similar to putative F-box protein YDR131C; null mutant suppresses dst1delta sensitivity for 6-azauracil	Verified	chr10:137376-139367	137376-139367	99.1%	53.70	49.65	58.26	53.70	92.20	85.11	51.67	55.98	88.65	0.19	0.23	0.37	0.66	1.24	Matched[3054]
YJL148W	RPA34	RNA polymerase I subunit A34.5	Verified	chr10:140434-141135	140434-141135	98.5%	702.69	365.81	388.94	347.01	53.50	7.23	534.25	367.97	30.36	1.97	1.49	0.13	-3.60	-4.07	Matched[3056]
YJL147C		Mitochondrial protein of unknown function; homozygous diploid deletion strain has a sporulation defect characterized by elevated dityrosine in the soluble fraction; expression induced by calcium shortage; YJL147W is a non-essential gene	Uncharacterized	chr10:141416-142564	141416-142564	99.2%	48.25	58.78	50.88	47.37	57.90	38.60	53.51	49.13	48.25	0.20	0.20	0.20	-0.03	-0.39	Matched[3057]
YJL146W	IDS2	"Protein involved in modulation of Ime2p activity during meiosis, appears to act indirectly to promote Ime2p-mediated late meiotic functions; found in growing cells and degraded during sporulation"	Verified	chr10:143289-144698	143289-144698	98.7%	84.81	79.06	79.06	64.69	120.03	87.69	81.94	71.88	103.86	0.30	0.29	0.43	0.53	0.65	Matched[3058]
YJL145W	SFH5	"Putative phosphatidylinositol transfer protein (PITP), exhibits phosphatidylinositol- but not phosphatidylcholine-transfer activity, localized to cytosol and microsomes, similar to Sec14p; may be PITP regulator rather than actual PITP"	Verified	chr10:145157-146041	145157-146041	98.8%	336.22	213.86	330.51	247.02	144.10	112.07	275.04	288.76	128.09	1.02	1.17	0.53	-1.17	-0.95	Frag>80[3059,3060,3061]
YJL144W		"Cytoplasmic hydrophilin of unknown function, possibly involved in the dessication response; expression induced by osmotic stress, starvation and during stationary phase; GFP-fusion protein is induced by the DNA-damaging agent MMS"	Uncharacterized	chr10:146356-146670	146356-146670	98.2%	29.09	48.48	61.41	42.01	1476.97	1063.29	38.78	51.71	1270.13	0.14	0.21	5.26	4.62	4.12	Matched[3061]
YJL143W	TIM17	Essential constituent of the mitochondrial inner membrane presequence translocase; interacts with Pam18p to recruit the presequence translocase-associated motor (PAM complex) and also required for protein sorting during import	Verified	chr10:147098-147574	147098-147574	98.3%	993.52	861.33	935.95	790.97	564.98	345.39	927.42	863.46	455.18	3.42	3.50	1.89	-0.92	-0.64	Matched[3062]
YJL142C		Hypothetical protein; null mutant displays increased levels of spontaneous Rad52 foci	Dubious	chr10:147816-148208	147816-148208	98.7%	213.92	234.54	262.89	213.92	1247.42	925.26	224.23	238.40	1086.34	0.83	0.97	4.50	2.19	1.75	Covered/w/another[3063]
YJL141C	YAK1	Serine-threonine protein kinase that is part of a glucose-sensing system involved in growth control in response to glucose availability; translocates from the cytoplasm to the nucleus and phosphorylates Pop2p in response to a glucose signal	Verified	chr10:147964-150387	147964-150387	98.7%	110.77	139.61	161.77	176.81	560.96	696.81	125.19	169.29	628.88	0.46	0.69	2.61	1.89	2.11	Matched[3063]
YJL140W	RPB4	RNA polymerase II subunit B32; forms two subunit dissociable complex with Rpb7p; dispensable under some environmental conditions; involved in export of mRNA to cytoplasm under stress conditions; involved in telomere maintenance	Verified	chr10:150958-151623	150958-151623	98.3%	640.14	542.36	640.14	491.95	1041.95	637.09	591.25	566.04	839.52	2.18	2.30	3.48	0.57	0.33	Matched[3064]
YJL139C	YUR1	"Mannosyltransferase of the KTR1 family, involved in protein N-glycosylation; located in the Golgi apparatus"	Verified	chr10:151710-152996	151710-152996	99.1%	76.08	66.67	80.00	64.31	90.98	54.12	71.37	72.16	72.55	0.26	0.29	0.30	0.01	0.16	Matched[3065]
YJL138C	TIF2	"Translation initiation factor eIF4A, identical to Tif1p; DEA(D/H)-box RNA helicase that couples ATPase activity to RNA binding and unwinding; forms a dumbbell structure of two compact domains connected by a linker; interacts with eIF4G"	Verified	chr10:153501-154688	153501-154688	6.7%	4128.90	2806.65	3280.67	3380.46	648.65	461.54	3467.78	3330.56	555.09	12.80	13.52	2.30	-2.58	-2.07	Frag<80[3066,3067,3068,3069]
YJL137C	GLG2	"Self-glucosylating initiator of glycogen synthesis, also glucosylates n-dodecyl-beta-D-maltoside; similar to mammalian glycogenin"	Verified	chr10:154982-156124	154982-156124	99.0%	72.45	84.82	83.93	75.10	185.54	136.95	78.63	79.52	161.24	0.29	0.32	0.67	1.02	1.27	Matched[3070]
YJL136W-A		Identified by SAGE	Uncharacterized	chr10:156166-156249	156166-156249	98.9%	24.08	12.04	60.21	0.00	36.13	36.13	18.06	30.11	36.13	0.07	0.12	0.15	0.26	NaN	Covered/w/another[3070]
YJL136C	RPS21B	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps21Ap and has similarity to rat S21 ribosomal protein	Verified	chr10:156547-157270	156547-156786,157247-157270	84.5%	6706.74	5058.05	5609.11	4578.68	3167.44	2132.54	5882.40	5093.90	2649.99	21.71	20.68	10.98	-0.94	-1.52	Frag>80[3071,3072]
YJL135W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified genes YJL134W/LCB3"	Dubious	chr10:157874-158191	157874-158191	98.8%	38.18	15.91	34.99	41.36	9.54	19.09	27.04	38.18	14.32	0.10	0.15	0.06	-1.42	0.12	Covered/w/another[3073]
YJL134W	LCB3	"Long-chain base-1-phosphate phosphatase with specificity for dihydrosphingosine-1-phosphate, regulates ceramide and long-chain base phosphates levels, involved in incorporation of exogenous long chain bases in sphingolipids"	Verified	chr10:158185-159414	158185-159414	98.7%	260.41	306.56	248.05	201.08	148.34	105.48	283.49	224.56	126.91	1.05	0.91	0.53	-0.82	-0.51	Matched[3073]
YJL133C-A		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr10:159620-159844	159620-159844	98.3%	587.68	827.27	881.52	533.43	2748.54	1464.68	707.48	707.48	2106.61	2.61	2.87	8.73	1.57	NaN	Matched[3074]
YJL133W	MRS3	"Mitochondrial iron transporter of the mitochondrial carrier family (MCF), very similar to and functionally redundant with Mrs4p; functions under low-iron conditions; may transport other cations in addition to iron"	Verified	chr10:160616-161560	160616-161560	98.6%	189.87	167.34	163.05	119.07	131.94	95.47	178.61	141.06	113.71	0.66	0.57	0.47	-0.31	-0.14	Matched[3076]
YJL132W		Putative protein of unknown function; localizes to the membrane fraction; possible Zap1p-regulated target gene induced by zinc deficiency; YJL132W is a non-essential gene	Uncharacterized	chr10:161911-164163	161911-164163	98.8%	31.43	48.49	37.27	29.19	92.05	54.78	39.96	33.23	73.41	0.15	0.13	0.30	1.14	0.72	Matched[3077]
YJL131C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YJL131C is not an essential gene"	Uncharacterized	chr10:164275-165345	164275-165345	99.4%	140.87	154.95	144.62	138.05	316.48	176.55	147.91	141.34	246.52	0.55	0.57	1.02	0.80	0.59	Matched[3078]
YJL130C	URA2	"Bifunctional carbamoylphosphate synthetase (CPSase)-aspartate transcarbamylase (ATCase), catalyzes the first two enzymatic steps in the de novo biosynthesis of pyrimidines; both activities are subject to feedback inhibition by UTP"	Verified	chr10:165720-172750	165720-172429,172749-172750	98.9%	801.99	630.87	785.72	1010.17	164.80	405.67	716.43	897.95	285.23	2.64	3.64	1.18	-1.65	-0.76	Frag<80[3079,3080]
YJL129C	TRK1	"Component of the Trk1p-Trk2p potassium transport system; 180 kDa high affinity potassium transporter; phosphorylated in vivo and interacts physically with the phosphatase Ppz1p, suggesting Trk1p acitivy is regulated by phosphorylation"	Verified	chr10:173596-177303	173596-177303	99.2%	179.47	172.67	139.77	122.37	76.41	61.73	176.07	131.07	69.07	0.65	0.53	0.29	-0.92	-0.49	Covered[3081]
YJL128C	PBS2	"MAP kinase kinase that plays a pivotal role in the osmosensing signal-transduction pathway, activated under severe osmotic stress"	Verified	chr10:178094-180100	178094-180100	99.0%	169.11	172.13	167.10	167.10	218.43	177.67	170.62	167.10	198.05	0.63	0.68	0.82	0.25	0.68	Matched[3082]
YJL127W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr10:180191-180307	180191-180307	98.9%	60.50	77.78	77.78	60.50	86.42	112.35	69.14	69.14	99.39	0.26	0.28	0.41	0.52	-0.12	Covered/w/another[3082]
YJL127C-B		"Putative protein of unknown function; identified based on homology to the filamentous fungus, <i>Ashbya gossypii</i>"	Uncharacterized	chr10:181549-181707	181549-181707	99.0%	457.38	470.09	438.33	393.86	851.24	457.38	463.74	416.09	654.31	1.71	1.69	2.71	0.65	NaN	Matched[3083]
YJL127C	SPT10	"Putative histone acetylase, sequence-specific activator of histone genes, binds specifically and highly cooperatively to pairs of UAS elements in core histone promoters, functions at or near the TATA box"	Verified	chr10:182296-184218	182296-184218	99.2%	59.23	63.95	46.65	38.26	39.31	34.60	61.59	42.46	36.95	0.23	0.17	0.15	-0.20	0.70	Matched[3084]
YJL126W	NIT2	"Nit protein, one of two proteins in S. cerevisiae with similarity to the Nit domain of NitFhit from fly and worm and to the mouse and human Nit protein which interacts with the Fhit tumor suppressor; nitrilase superfamily member"	Verified	chr10:184499-185422	184499-185422	98.6%	86.67	89.96	78.99	64.73	110.81	74.60	88.32	71.86	92.70	0.33	0.29	0.38	0.37	0.14	Matched[3085]
YJL125C	GCD14	"Subunit of tRNA (1-methyladenosine) methyltransferase, with Gcd10p, required for the modification of the adenine at position 58 in tRNAs, especially tRNAi-Met; first identified as a negative regulator of GCN4 expression"	Verified	chr10:185526-186677	185526-186677	99.2%	161.92	109.41	88.40	97.15	27.13	25.38	135.66	92.78	26.26	0.50	0.38	0.11	-1.82	-0.55	Matched[3086]
YJL124C	LSM1	"Lsm (Like Sm) protein; forms heteroheptameric complex (with Lsm2p, Lsm3p, Lsm4p, Lsm5p, Lsm6p, and Lsm7p) involved in degradation of cytoplasmic mRNAs"	Verified	chr10:187125-187643	187125-187643	99.2%	774.95	757.47	786.60	767.18	598.20	429.23	766.21	776.89	513.72	2.83	3.15	2.13	-0.60	-0.44	Matched[3088]
YJL123C		Protein of unknown function that may interact with ribosomes; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and to COPI-coated vesicles (early Golgi); YJL123C is a non-essential gene	Verified	chr10:188003-189439	188003-189439	98.3%	477.66	470.59	486.86	450.07	634.76	454.31	474.13	468.47	544.54	1.75	1.90	2.26	0.22	0.31	Matched[3089]
YJL122W	ALB1	Shuttling pre-60S factor; involved in the biogenesis of ribosomal large subunit; interacts directly with Arx1p; responsible for Tif6p recycling defects in absence of Rei1p	Verified	chr10:189715-190242	189715-190242	98.4%	442.80	261.83	271.46	202.15	34.65	0.00	352.32	236.80	17.33	1.30	0.96	0.07	-3.77	-3.33	Matched[3090]
YJL120W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YJL121C/RPE1; deletion confers sensitivity to GSAO"	Dubious	chr10:191021-191344	191021-191344	99.1%	112.12	146.38	168.18	124.58	80.98	109.01	129.25	146.38	94.99	0.48	0.59	0.39	-0.62	-0.06	Covered/w/another[3092]
YJL121C	RPE1	"D-ribulose-5-phosphate 3-epimerase, catalyzes a reaction in the non-oxidative part of the pentose-phosphate pathway; mutants are sensitive to oxidative stress"	Verified	chr10:190373-191089	190373-191089	98.6%	653.81	626.92	611.36	590.13	403.33	397.66	640.37	600.74	400.50	2.36	2.44	1.66	-0.58	-0.20	Matched[3091]
YJL118W		"Putative protein of unknown function; may interact with ribosomes, based on co-purification experiments; YJL18W is a non-essential gene; deletion enhances the toxicity of heterologously expressed human alpha-synuclein"	Verified	chr10:191638-192297	191638-192297	98.8%	96.63	99.69	88.96	59.82	56.75	33.74	98.16	74.39	45.25	0.36	0.30	0.19	-0.72	-0.88	Matched[3092]
YJL119C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr10:191571-191894	191571-191894	99.0%	71.67	71.67	68.55	28.04	49.86	37.39	71.67	48.30	43.63	0.26	0.20	0.18	-0.15	-0.28	Matched[3092]
YJL117W	PHO86	"Endoplasmic reticulum (ER) resident protein required for ER exit of the high-affinity phosphate transporter Pho84p, specifically required for packaging of Pho84p into COPII vesicles"	Verified	chr10:192530-193465	192530-193465	98.9%	720.66	656.91	800.61	625.58	560.75	464.59	688.79	713.10	512.67	2.54	2.89	2.12	-0.48	-0.20	Matched[3093]
YJL116C	NCA3	Protein that functions with Nca2p to regulate mitochondrial expression of subunits 6 (Atp6p) and 8 (Atp8p ) of the Fo-F1 ATP synthase; member of the SUN family	Verified	chr10:193859-194872	193859-194872	98.4%	46.09	87.17	28.05	40.08	76.15	54.10	66.63	34.07	65.12	0.25	0.14	0.27	0.93	0.12	Covered[3094]
YJL115W	ASF1	"Nucleosome assembly factor, involved in chromatin assembly and disassembly, anti-silencing protein that causes derepression of silent loci when overexpressed"	Verified	chr10:196285-197124	196285-197124	97.9%	364.83	297.95	368.48	237.14	171.47	201.87	331.39	302.81	186.67	1.22	1.23	0.77	-0.70	-0.40	Frag>80[3095,3096]
YJL112W	MDV1	"Peripheral protein of the cytosolic face of the mitochondrial outer membrane, required for mitochondrial fission; interacts with Fis1p and with the dynamin-related GTPase Dnm1p; contains WD repeats"	Verified	chr10:205301-207445	205301-207445	98.6%	141.89	133.37	122.97	107.36	110.20	71.42	137.63	115.16	90.81	0.51	0.47	0.38	-0.34	-0.85	Matched[3097]
YJL111W	CCT7	"Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo"	Verified	chr10:207873-209525	207873-209525	98.6%	687.50	521.30	639.66	588.15	296.83	268.62	604.40	613.91	282.73	2.23	2.49	1.17	-1.12	-0.66	Matched[3098]
YJL110C	GZF3	GATA zinc finger protein and Dal80p homolog that negatively regulates nitrogen catabolic gene expression by competing with Gat1p for GATA site binding; function requires a repressive carbon source; dimerizes with Dal80p and binds to Tor1p	Verified	chr10:209918-211573	209918-211573	99.0%	121.40	144.58	126.89	113.47	86.01	77.47	132.99	120.18	81.74	0.49	0.49	0.34	-0.56	-0.21	Matched[3099]
YJL109C	UTP10	"Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA"	Verified	chr10:211996-217305	211996-217305	99.1%	175.77	103.94	101.09	80.19	13.87	7.98	139.86	90.64	10.93	0.52	0.37	0.05	-3.05	-3.05	Matched[3100]
YJL108C	PRM10	"Pheromone-regulated protein, predicted to have 5 transmembrane segments"	Verified	chr10:217701-218852	217701-218852	98.7%	29.91	17.60	24.63	13.20	67.74	49.27	23.75	18.91	58.50	0.09	0.08	0.24	1.63	2.12	Covered/w/another[3101]
YJL107C		"Putative protein of unknown function; expression is induced by activation of the HOG1 mitogen-activated signaling pathway and this induction is Hog1p/Pbs2p dependent; YJL107C and adjacent ORF, YJL108C are merged in related fungi"	Uncharacterized	chr10:218849-220012	218849-220012	99.0%	14.75	8.67	4.34	12.14	25.16	37.30	11.71	8.24	31.23	0.04	0.03	0.13	1.92	2.26	Covered/w/another[3101]
YJL106W	IME2	"Serine/threonine protein kinase involved in activation of meiosis, associates with Ime1p and mediates its stability, activates Ndt80p; IME2 expression is positively regulated by Ime1p"	Verified	chr10:221386-223323	221386-223323	98.9%	17.21	25.03	12.52	14.08	54.76	21.90	21.12	13.30	38.33	0.08	0.05	0.16	1.53	1.40	Covered/w/another[3101]
YJL105W	SET4	"Protein of unknown function, contains a SET domain"	Verified	chr10:225051-226733	225051-226733	98.7%	28.28	33.70	29.48	19.86	30.69	16.85	30.99	24.67	23.77	0.11	0.10	0.10	-0.05	0.27	
YJL104W	PAM16	"Constituent of the mitochondrial import motor associated with the presequence translocase, along with Ssc1p, Tim44p, Mge1p, and Pam18p; forms a 1:1 subcomplex with Pam18p and inhibits its cochaperone activity; contains J-like domain"	Verified	chr10:227323-227772	227323-227772	98.2%	542.99	552.04	583.71	468.33	520.36	325.79	547.51	526.02	423.08	2.02	2.14	1.75	-0.31	-0.38	Matched[3102]
YJL103C		"Putative zinc cluster protein of unknown function; proposed to be involved in the regulation of energy metabolism, based on patterns of expression and sequence analysis"	Uncharacterized	chr10:229021-230877	229021-230877	99.1%	32.07	48.38	47.83	70.12	99.47	97.30	40.22	58.98	98.39	0.15	0.24	0.41	0.74	1.10	Matched[3105]
YJL102W	MEF2	Mitochondrial elongation factor involved in translational elongation	Verified	chr10:231297-233756	231297-233756	98.9%	49.75	54.28	51.40	76.89	131.58	84.29	52.01	64.14	107.93	0.19	0.26	0.45	0.75	0.88	Matched[3106]
YJL101C	GSH1	"Gamma glutamylcysteine synthetase catalyzes the first step in glutathione (GSH) biosynthesis; expression induced by oxidants, cadmium, and mercury"	Verified	chr10:234316-236352	234316-236352	99.1%	294.87	207.15	355.83	229.45	177.91	153.63	251.01	292.64	165.77	0.93	1.19	0.69	-0.82	-0.20	Matched[3108]
YJL100W	LSB6	"Phosphatidylinositol 4-kinase that binds Las17p, which is a homolog of human Wiskott-Aldrich Syndrome protein involved in actin patch assembly and actin polymerization"	Verified	chr10:237259-239082	237259-239082	98.5%	76.27	57.90	69.59	52.33	143.64	116.92	67.09	60.96	130.28	0.25	0.25	0.54	1.10	1.39	Matched[3109]
YJL099W	CHS6	"Member of the Chs5p-Arf1p-binding proteins (ChAPs), a group of 4 related, interacting proteins (Bch1p, Fmp50p, Bud7p, Chs6p) that mediate export of specific cargo proteins, including chitin synthase Chs3p, from the Golgi to plasma membrane"	Verified	chr10:239410-241650	239410-241650	98.8%	52.83	65.47	47.86	44.70	85.34	55.08	59.15	46.28	70.21	0.22	0.19	0.29	0.60	0.55	Covered[3110]
YJL098W	SAP185	"Protein that forms a complex with the Sit4p protein phosphatase and is required for its function; member of a family of similar proteins including Sap4p, Sap155p, and Sap190p"	Verified	chr10:242078-245254	242078-245254	98.5%	95.89	49.54	51.14	28.77	12.47	11.19	72.72	39.96	11.83	0.27	0.16	0.05	-1.76	-0.99	Frag>80[3111]
YJL097W	PHS1	"Protein of unknown function; homolog of mammalian PTPLA; involved in sphingolipid biosynthesis, protein trafficking; required for cell viability"	Verified	chr10:245587-246240	245587-246240	99.2%	579.65	670.61	480.99	470.20	488.69	342.24	625.13	475.59	415.47	2.31	1.93	1.72	-0.19	-0.03	Matched[3112]
YJL096W	MRPL49	Mitochondrial ribosomal protein of the large subunit	Verified	chr10:246486-246971	246486-246971	98.9%	339.11	328.71	368.24	357.84	534.67	351.60	333.91	363.04	443.13	1.23	1.47	1.84	0.29	0.07	Matched[3113]
YJL095W	BCK1	"Mitogen-activated protein (MAP) kinase kinase kinase acting in the protein kinase C signaling pathway, which controls cell integrity; upon activation by Pkc1p phosphorylates downstream kinases Mkk1p and Mkk2p"	Verified	chr10:247250-251686	247250-251686	98.9%	66.77	67.23	62.90	66.09	32.59	36.69	67.00	64.50	34.64	0.25	0.26	0.14	-0.90	0.04	Matched[3114]
YJL094C	KHA1	"Putative K+/H+ antiporter with a probable role in intracellular cation homeostasis, localized to Golgi vesicles and detected in highly purified mitochondria in high-throughput studies"	Verified	chr10:251816-254437	251816-254437	98.9%	71.72	72.10	61.31	57.84	112.97	91.00	71.91	59.57	101.99	0.27	0.24	0.42	0.78	1.23	Matched[3115]
YJL093C	TOK1	"Outward-rectifier potassium channel of the plasma membrane with two pore domains in tandem, each of which forms a functional channel permeable to potassium; carboxy tail functions to prevent inner gate closures; target of K1 toxin"	Verified	chr10:254732-256807	254732-256807	99.0%	108.04	110.96	106.58	94.42	113.88	78.84	109.50	100.50	96.36	0.40	0.41	0.40	-0.06	0.53	Matched[3116]
YJL092W	SRS2	"DNA helicase and DNA-dependent ATPase involved in DNA repair, needed for proper timing of commitment to meiotic recombination and transition from Meiosis I to II; affects genome stability by suppressing unscheduled homologous recombination"	Verified	chr10:257418-260942	257418-260942	98.7%	140.77	122.10	104.29	83.03	62.63	70.39	131.43	93.66	66.51	0.49	0.38	0.28	-0.49	0.03	Matched[3117]
YJL091C	GWT1	"Protein involved in the inositol acylation of glucosaminyl phosphatidylinositol (GlcN-PI) to form glucosaminyl(acyl)phosphatidylinositol (GlcN(acyl)PI), an intermediate in the biosynthesis of glycosylphosphatidylinositol (GPI) anchors"	Verified	chr10:261075-262547	261075-262547	99.0%	151.52	129.58	126.84	128.21	301.66	177.57	140.55	127.52	239.62	0.52	0.52	0.99	0.91	0.77	Matched[3118]
YJL090C	DPB11	"Subunit of DNA Polymerase II Epsilon complex; has BRCT domain, required on the prereplicative complex at replication origins for loading DNA polymerases to initiate DNA synthesis, also required for S/M checkpoint control"	Verified	chr10:262752-265046	262752-265046	99.1%	69.47	68.59	72.55	51.89	50.57	37.81	69.03	62.22	44.19	0.25	0.25	0.18	-0.49	0.23	Matched[3119]
YJL089W	SIP4	C6 zinc cluster transcriptional activator that binds to the carbon source-responsive element (CSRE) of gluconeogenic genes; involved in the positive regulation of gluconeogenesis; regulated by Snf1p protein kinase; localized to the nucleus	Verified	chr10:265921-268410	265921-268410	99.3%	2.83	10.92	4.04	2.43	75.24	60.67	6.88	3.24	67.95	0.03	0.01	0.28	4.39	3.93	Frag>80[3120,3121]
YJL088W	ARG3	"Ornithine carbamoyltransferase (carbamoylphosphate:L-ornithine carbamoyltransferase), catalyzes the sixth step in the biosynthesis of the arginine precursor ornithine"	Verified	chr10:268794-269810	268794-269810	99.1%	19.85	59.55	3.97	7.94	19.85	15.88	39.70	5.95	17.86	0.15	0.02	0.07	1.58	0.58	Overlap[3122]
YJL087C	TRL1	"tRNA ligase, required for tRNA splicing; composed of three essential domains containing the phosphodiesterase, polynucleotide kinase, and ligase activities required for ligation; localized at the inner membrane of the nuclear envelope"	Verified	chr10:269997-272480	269997-272480	99.5%	74.48	64.36	53.83	48.57	34.00	24.69	69.42	51.20	29.35	0.26	0.21	0.12	-0.80	-0.43	Covered[3122]
YJL085W	EXO70	"Essential 70kDa subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, and Exo84p), which has the essential function of mediating polarized targeting of secretory vesicles to active sites of exocytosis"	Verified	chr10:272822-274693	272822-274693	98.8%	103.24	117.29	101.07	85.94	121.07	62.70	110.26	93.51	91.89	0.41	0.38	0.38	-0.03	0.13	Matched[3123]
YJL086C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified genes YJL085W/EXO70 and YJL087C/TRL1"	Dubious	chr10:272473-272841	272473-272841	98.7%	27.45	21.96	13.73	10.98	10.98	13.73	24.71	12.35	12.35	0.09	0.05	0.05	0.00	0.01	Overlap[3122,3123]
YJL084C	ALY2	"Cytoplasmic protein of unknown function that interacts with the cyclin Pcl7p; phosphorylated in vitro by the cyclin-CDK complex, Pcl7p-Pho85p; identified as a potential Cdc28p substrate; mRNA is cell cycle regulated, peaking in M phase"	Verified	chr10:274857-277997	274857-277997	98.8%	90.19	99.85	76.98	76.98	82.46	105.32	95.02	76.98	93.89	0.35	0.31	0.39	0.29	1.05	Frag>80[3124]
YJL083W	TAX4	"Protein involved in regulation of phosphatidylinositol 4,5-bisphosphate concentrations; Irs4p and Tax4p bind and activate the phosphatase Inp51p"	Verified	chr10:278836-280650	278836-280650	98.6%	44.15	40.80	43.03	32.97	78.24	91.66	42.47	38.00	84.95	0.16	0.15	0.35	1.16	1.65	Matched[3125]
YJL082W	IML2	"Protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr10:281180-283375	281180-283375	98.7%	113.47	125.46	129.15	126.84	311.34	342.71	119.46	128.00	327.02	0.44	0.52	1.35	1.35	1.85	Matched[3126]
YJL081C	ARP4	"Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling enzyme complexes"	Verified	chr10:283797-285266	283797-285266	99.1%	305.56	293.20	257.50	289.08	189.52	170.98	299.38	273.29	180.25	1.11	1.11	0.75	-0.60	-0.29	Matched[3128]
YJL080C	SCP160	"Essential RNA-binding G protein effector of mating response pathway, mainly associated with nuclear envelope and ER, interacts in mRNA-dependent manner with translating ribosomes via multiple KH domains, similar to vertebrate vigilins"	Verified	chr10:285553-289221	285553-289221	99.0%	599.68	528.37	554.53	553.43	118.39	128.03	564.03	553.98	123.21	2.08	2.25	0.51	-2.17	-1.33	Frag>80[3129,3130]
YJL079C	PRY1	"Protein of unknown function, has similarity to Pry2p and Pry3p and to the plant PR-1 class of pathogen related proteins"	Verified	chr10:289870-290769	289870-290769	98.0%	1916.78	3343.88	1993.86	1964.39	559.96	451.14	2630.33	1979.12	505.55	9.71	8.03	2.09	-1.97	-1.47	Matched[3131]
YJL078C	PRY3	"Protein of unknown function, has similarity to Pry1p and Pry2p and to the plant PR-1 class of pathogen related proteins"	Verified	chr10:291331-293976	291331-293976	98.1%	291.35	365.34	305.61	220.82	163.02	188.45	328.34	263.22	175.73	1.21	1.07	0.73	-0.58	0.35	Covered/w/another[3132]
YJL077W-B		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr10:294042-294140	294042-294140	98.8%	143.16	194.29	163.61	122.71	143.16	71.58	168.73	143.16	107.37	0.62	0.58	0.44	-0.42	NaN	Covered/w/another[3132]
YJL077W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified gene YJL077C/ICS3"	Dubious	chr10:294794-294880	294794-294880	99.1%	231.88	278.26	197.10	185.51	185.51	92.75	255.07	191.30	139.13	0.94	0.78	0.58	-0.46	NaN	Covered/w/another[3132]
YJL077C	ICS3	Protein of unknown function	Verified	chr10:294661-295056	294661-295056	98.9%	217.11	168.58	181.35	137.93	196.68	99.62	192.85	159.64	148.15	0.71	0.65	0.61	-0.11	-0.52	Covered/w/another[3132]
YJL076W	NET1	"Core subunit of the RENT complex, which is a complex involved in nucleolar silencing and telophase exit; stimulates transcription by RNA polymerase I and regulates nucleolar structure"	Verified	chr10:295240-298809	295240-298809	98.6%	370.17	323.58	314.77	287.22	121.88	219.32	346.88	300.99	170.60	1.28	1.22	0.71	-0.82	-0.16	Covered/w/another[3132]
YJL075C	APQ13	"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; 85% of ORF overlaps the verified gene NET1; null mutant is sensitive to sorbate"	Dubious	chr10:298455-298871	298455-298871	98.9%	635.54	487.57	514.25	417.22	293.51	351.73	561.55	465.74	322.62	2.07	1.89	1.34	-0.53	-0.21	Covered/w/another[3132]
YJL074C	SMC3	"Subunit of the multiprotein cohesin complex required for sister chromatid cohesion in mitotic cells; also required, with Rec8p, for cohesion and recombination during meiosis; phylogenetically conserved SMC chromosomal ATPase family member"	Verified	chr10:299152-302844	299152-302844	99.4%	123.34	73.52	94.48	83.32	35.94	20.42	98.43	88.90	28.18	0.36	0.36	0.12	-1.66	-1.49	Matched[3133]
YJL073W	JEM1	"DnaJ-like chaperone required for nuclear membrane fusion during mating, localizes to the ER membrane; exhibits genetic interactions with KAR2"	Verified	chr10:303176-305113	303176-305113	98.9%	123.65	122.61	118.43	102.78	101.22	90.26	123.13	110.61	95.74	0.45	0.45	0.40	-0.21	0.34	Matched[3134]
YJL072C	PSF2	"Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p), which is localized to DNA replication origins and implicated in assembly of the DNA replication machinery"	Verified	chr10:305216-305857	305216-305857	99.1%	86.46	106.89	105.32	119.47	116.32	66.02	96.67	112.39	91.17	0.36	0.46	0.38	-0.30	-0.61	Covered/w/another[3134]
YJL071W	ARG2	"Acetylglutamate synthase (glutamate N-acetyltransferase), mitochondrial enzyme that catalyzes the first step in the biosynthesis of the arginine precursor ornithine; forms a complex with Arg5,6p"	Verified	chr10:306127-307851	306127-307851	98.9%	42.78	98.45	51.57	35.16	42.78	53.33	70.61	43.36	48.05	0.26	0.18	0.20	0.15	0.33	Matched[3135]
YJL070C		"Putative protein of unknown function with similarity to AMP deaminases; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YJL070C is a non-essential gene"	Uncharacterized	chr10:307966-310632	307966-310632	99.1%	51.81	60.51	83.58	81.69	132.37	114.59	56.16	82.64	123.48	0.21	0.34	0.51	0.58	1.00	Matched[3136]
YJL069C	UTP18	"Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data"	Verified	chr10:310917-312701	310917-312701	99.0%	159.56	110.90	109.77	80.91	14.71	6.22	135.23	95.34	10.47	0.50	0.39	0.04	-3.19	-3.44	Matched[3137]
YJL068C		"Non-essential intracellular esterase that can function as an S-formylglutathione hydrolase; may be involved in the detoxification of formaldehyde, which can be metabolized to S-formylglutathione; similar to human esterase D"	Verified	chr10:313011-313910	313011-313910	98.7%	284.70	401.73	354.46	337.58	638.03	541.26	343.21	346.02	589.65	1.27	1.40	2.44	0.77	1.23	Covered/w/another[3138]
YJL067W		"Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr10:314079-314429	314079-314429	99.0%	201.46	299.32	276.29	236.00	952.63	754.05	250.39	256.15	853.34	0.92	1.04	3.54	1.74	0.99	Covered/w/another[3138]
YJL066C	MPM1	"Mitochondrial membrane protein of unknown function, contains no hydrophobic stretches"	Verified	chr10:314109-314867	314109-314867	98.7%	176.27	257.73	235.03	188.29	843.98	624.97	217.00	211.66	734.48	0.80	0.86	3.04	1.79	2.04	Covered/w/another[3138]
YJL064W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified gene YJL065C/DLS1"	Dubious	chr10:315170-315565	315170-315565	98.6%	230.47	276.57	169.01	171.57	163.89	102.43	253.52	170.29	133.16	0.94	0.69	0.55	-0.35	0.10	Covered/w/another[3138]
YJL065C	DLS1	"Subunit of ISW2/yCHRAC chromatin accessibility complex along with Itc1p, Isw2p, and Dpb4p; involved in inheritance of telomeric silencing"	Verified	chr10:315049-315552	315049-315552	98.6%	241.43	267.58	179.06	169.00	175.04	94.56	254.51	174.03	134.80	0.94	0.71	0.56	-0.37	0.02	Covered/w/another[3138]
YJL063C	MRPL8	Mitochondrial ribosomal protein of the large subunit	Verified	chr10:315754-316470	315754-316470	99.0%	370.60	325.50	367.78	329.73	367.78	284.64	348.05	348.76	326.21	1.28	1.42	1.35	-0.10	-0.00	Covered/w/another[3138]
YJL062W-A		"Putative protein of unknown function, identified based on comparison to related yeast species; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr10:316718-316975	316718-316975	98.1%	640.11	592.69	730.98	659.86	1157.72	802.11	616.40	695.42	979.91	2.28	2.82	4.06	0.49	0.27	Matched[3139]
YJL062W	LAS21	Integral plasma membrane protein involved in the synthesis of the glycosylphosphatidylinositol (GPI) core structure; mutations affect cell wall integrity	Verified	chr10:317279-319771	317279-319771	99.0%	150.30	170.96	151.92	158.40	74.14	80.62	160.63	155.16	77.38	0.59	0.63	0.32	-1.00	-0.18	Matched[3140]
YJL061W	NUP82	"Nucleoporin, subunit of the nuclear pore complex (NPC); forms a subcomplex with Nup159p and Nsp1p, interacts with Nup116p and is required for proper localization of Nup116p in the NPC"	Verified	chr10:320011-322152	320011-322152	99.0%	171.22	140.09	137.26	147.64	139.15	108.02	155.66	142.45	123.58	0.57	0.58	0.51	-0.20	-0.09	Matched[3141]
YJL060W	BNA3	"Arylformamidase, involved in biosynthesis of nicotinic acid from tryptophan via kynurenine pathway; potential Cdc28p substrate"	Verified	chr10:323381-324715	323381-324715	98.9%	251.44	385.50	315.82	274.92	368.83	304.46	318.47	295.37	336.65	1.18	1.20	1.39	0.19	0.66	Matched[3143]
YJL059W	YHC3	Vacuolar membrane protein involved in the ATP-dependent transport of arginine into the vacuole and possibly in balancing ion homeostasis; homolog of human CLN3 involved in Batten disease (juvenile onset neuronal ceroid lipofuscinosis)	Verified	chr10:324959-326185	324959-326185	99.0%	88.04	117.66	74.88	67.47	98.74	78.99	102.85	71.17	88.86	0.38	0.29	0.37	0.32	0.90	Covered/w/another[3144]
YJL058C	BIT61	"Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p-Slm1p-Slm2p), a membrane-associated complex that regulates cell cycle-dependent actin cytoskeletal dynamics during polarized growth and cell wall integrity"	Verified	chr10:326237-327868	326237-327868	99.1%	35.25	33.40	30.92	27.21	25.97	16.08	34.32	29.07	21.03	0.13	0.12	0.09	-0.47	-0.43	Covered/w/another[3144]
YJL057C	IKS1	Putative serine/threonine kinase; expression is induced during mild heat stress; deletion mutants are hypersensitive to copper sulphate and resistant to sorbate; interacts with an N-terminal fragment of Sst2p	Verified	chr10:328113-330116	328113-330116	99.2%	62.39	92.58	78.49	92.08	468.93	362.26	77.48	85.28	415.60	0.29	0.35	1.72	2.28	2.49	Matched[3145]
YJL056C	ZAP1	"Zinc-regulated transcription factor, binds to zinc-responsive promoter elements to induce transcription of certain genes in the presence of zinc; regulates its own transcription; contains seven zinc-finger domains"	Verified	chr10:330426-333068	330426-333068	98.9%	59.67	71.52	45.90	45.13	35.19	29.83	65.59	45.51	32.51	0.24	0.18	0.13	-0.49	-0.06	Matched[3146]
YJL055W		"Putative protein of unknown function; deletion mutants are sensitive to purine base analogs, 6-hydroxylaminopurine (HAP) and 2-amino-6-hydroxylaminopurine (AHA) and are AHA-hypermutable"	Uncharacterized	chr10:333352-334089	333352-334089	98.2%	604.21	743.53	611.10	630.42	1241.52	1047.02	673.87	620.76	1144.27	2.49	2.52	4.74	0.88	0.77	Matched[3147]
YJL054W	TIM54	Component of the mitochondrial Tim54p-Tim22p complex involved in insertion of polytopic proteins into the inner membrane	Verified	chr10:334260-335696	334260-335696	98.5%	250.83	243.77	248.71	207.73	158.27	132.83	247.30	228.22	145.55	0.91	0.93	0.60	-0.65	-0.31	Covered/w/another[3148]
YJL053W	PEP8	"Vacuolar protein sorting protein that forms part of the multimeric membrane-associated retromer complex along with Vps35p, Vps29p, Vps17p, and Vps5p; essential for endosome-to-Golgi retrograde protein transport"	Verified	chr10:335893-337032	335893-337032	98.8%	169.66	188.31	184.76	183.87	348.20	252.27	178.99	184.31	300.23	0.66	0.75	1.24	0.70	1.15	Covered/w/another[3148]
YJL052C-A		"Putative protein of unknown function, identified based on comparison to related yeast species"	Uncharacterized	chr10:337879-337998	337879-337998	98.3%	8.48	0.00	25.44	0.00	8.48	8.48	4.24	12.72	8.48	0.02	0.05	0.04	-0.58	0.43	
YJL052W	TDH1	"Glyceraldehyde-3-phosphate dehydrogenase, isozyme 1, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall"	Verified	chr10:338266-339264	338266-339264	58.3%	5185.43	27193.01	6475.34	8067.56	13325.13	12524.73	16189.22	7271.45	12924.93	59.76	29.52	53.55	0.83	0.29	Frag>80[3149,3150]
YJL051W		"Bud tip localized protein of unknown function; mRNA is targeted to the bud by a She2p dependent transport system; mRNA is cell cycle regulated via Fkh2p, peaking in G2/M phase; null mutant displays increased levels of spontaneous Rad52 foci"	Uncharacterized	chr10:339782-342250	339782-342250	98.8%	86.05	112.27	93.42	72.12	86.46	86.87	99.16	82.77	86.66	0.37	0.34	0.36	0.07	0.45	Matched[3151]
YJL050W	MTR4	"Dead-box family ATP dependent helicase required for mRNA export from the nucleus; co-factor of the exosome complex, required for 3' end formation of 5.8S rRNA"	Verified	chr10:342517-345738	342517-345738	98.6%	267.27	147.64	184.79	150.48	14.80	4.41	207.46	167.64	9.60	0.77	0.68	0.04	-4.13	-4.32	Matched[3152]
YJL049W		Putative protein of unknown function; YJL049W is a non-essential gene	Uncharacterized	chr10:345968-347320	345968-347320	98.6%	114.66	114.66	121.41	98.93	172.37	77.19	114.66	110.17	124.78	0.42	0.45	0.52	0.18	-0.01	Covered/w/another[3153]
YJL048C	UBX6	"UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p, transcription is repressed when cells are grown in media containing inositol and choline"	Verified	chr10:347442-348632	347442-348632	99.0%	79.75	133.19	82.29	102.65	341.89	226.51	106.47	92.47	284.20	0.39	0.38	1.18	1.62	1.35	Covered/w/another[3153]
YJL047C-A		Putative protein of unknown function	Uncharacterized	chr10:349039-349173	349039-349173	99.2%	104.51	119.44	52.26	52.26	67.19	89.58	111.98	52.26	78.38	0.41	0.21	0.32	0.58	NaN	Covered/w/another[3153]
YJL047C	RTT101	"Cullin subunit of a Roc1p-dependent E3 ubiquitin ligase complex; deletion phenotype suggests a role in anaphase progression; interacts with Mms22p and implicated in Mms22-dependent DNA repair; modified by the ubiquitin-like protein, Rub1p"	Verified	chr10:349575-352103	349575-352103	99.2%	46.63	46.24	37.07	38.66	55.00	47.03	46.44	37.87	51.02	0.17	0.15	0.21	0.43	0.92	Covered/w/another[3153]
YJL046W		"Putative protein of unknown function, predicted to encode a lipoate-protein ligase A family member; deletion mutant has a respiratory growth defect"	Uncharacterized	chr10:352381-353610	352381-353610	98.9%	94.57	93.75	83.88	108.55	164.47	99.51	94.16	96.22	131.99	0.35	0.39	0.55	0.46	0.44	Matched[3154]
YJL045W		"Minor succinate dehydrogenase isozyme; homologous to Sdh1p, the major isozyme reponsible for the oxidation of succinate and transfer of electrons to ubiquinone; induced during the diauxic shift in a Cat8p-dependent manner"	Uncharacterized	chr10:356019-357923	356019-357923	98.4%	14.94	14.94	11.74	12.27	44.29	41.09	14.94	12.01	42.69	0.06	0.05	0.18	1.83	1.24	Matched[3156]
YJL044C	GYP6	"GTPase-activating protein (GAP) for the yeast Rab family member, Ypt6p; involved in vesicle mediated protein transport"	Verified	chr10:358295-359671	358295-359671	99.2%	377.15	445.26	330.28	314.90	322.23	290.00	411.20	322.59	306.11	1.52	1.31	1.27	-0.08	0.39	Matched[3158]
YJL043W		Putative protein of unknown function; YJL043W is a non-essential gene	Uncharacterized	chr10:360125-360898	360125-360898	98.4%	22.33	22.33	18.39	5.25	26.27	32.84	22.33	11.82	29.56	0.08	0.05	0.12	1.32	0.54	Covered/w/another[3159]
YJL042W	MHP1	Microtubule-associated protein involved in assembly and stabilization of microtubules; overproduction results in cell cycle arrest at G2 phase; similar to Drosophila protein MAP and to mammalian MAP4 proteins	Verified	chr10:361244-365440	361244-365440	98.6%	145.43	187.95	170.56	176.84	230.71	401.26	166.69	173.70	315.99	0.62	0.71	1.31	0.86	1.79	Covered/w/another[3159]
YJL041W	NSP1	"Essential component of the nuclear pore complex, which mediates nuclear import and export"	Verified	chr10:365779-368368	365779-365779,365898-368368	81.9%	293.48	275.69	278.66	258.89	155.14	124.51	284.58	268.77	139.82	1.05	1.09	0.58	-0.94	-0.31	Frag>80[3160,3161,3162,3163]
YJL039C	NUP192	"Essential structural subunit of the nuclear pore complex (NPC), localizes to the nuclear periphery of nuclear pores, homologous to human p205"	Verified	chr10:368743-373794	368743-373794	99.1%	123.24	97.87	95.67	89.88	41.55	53.53	110.55	92.78	47.54	0.41	0.38	0.20	-0.96	-0.49	Frag>80[3164,3165,3166]
YJL038C		"Putative protein of unknown function; expression induced during sporulation and repressed during vegetative growth by Sum1p and Hst1p; similar to adjacent open reading frame, YJL037W"	Uncharacterized	chr10:375110-375769	375110-375769	99.4%	30.47	24.38	24.38	12.19	27.43	12.19	27.43	18.28	19.81	0.10	0.07	0.08	0.12	0.15	
YJL037W		"Putative protein of unknown function; expression induced in respiratory-deficient cells and in carbon-limited chemostat cultures; similar to adjacent ORF, YJL038C; null mutant displays increased levels of spontaneous Rad52 foci"	Uncharacterized	chr10:376657-377331	376657-377331	98.5%	6.01	3.01	3.01	4.51	21.05	15.03	4.51	3.76	18.04	0.02	0.02	0.07	2.26	0.36	Frag<80[3167]
YJL036W	SNX4	"Sorting nexin, involved in the retrieval of late-Golgi SNAREs from the post-Golgi endosome to the trans-Golgi network and in cytoplasm to vacuole transport; contains a PX domain; forms complex with Snx41p and Atg20p"	Verified	chr10:378820-380091	378820-380091	98.7%	144.20	152.17	168.90	182.44	317.88	258.12	148.18	175.67	288.00	0.55	0.71	1.19	0.71	0.96	Matched[3168]
YJL035C	TAD2	"Subunit of tRNA-specific adenosine-34 deaminase, forms a heterodimer with Tad3p that converts adenosine to inosine at the wobble position of several tRNAs"	Verified	chr10:380244-380996	380244-380996	99.2%	103.04	53.53	89.66	42.82	173.97	89.66	78.29	66.24	131.82	0.29	0.27	0.55	0.99	1.48	Matched[3169]
YJL034W	KAR2	"ATPase involved in protein import into the ER, also acts as a chaperone to mediate protein folding in the ER and may play a role in ER export of soluble proteins; regulates the unfolded protein response via interaction with Ire1p"	Verified	chr10:381322-383370	381322-383370	97.7%	1575.83	1092.84	1554.35	1333.08	10162.20	8671.79	1334.33	1443.72	9416.99	4.93	5.86	39.02	2.71	2.30	Matched[3170]
YJL033W	HCA4	Putative nucleolar DEAD box RNA helicase; high-copy number suppression of a U14 snoRNA processing mutant suggests an involvement in 18S rRNA synthesis	Verified	chr10:383832-386144	383832-386144	98.6%	210.05	100.86	101.30	80.69	12.28	4.82	155.46	90.99	8.55	0.57	0.37	0.04	-3.41	-2.77	Matched[3171]
YJL032W		Dubious open reading frame unlikely to encode a functional protein; overlaps 3' end of essential BET4 gene encoding the alpha subunit of Type II geranylgeranyltransferase	Dubious	chr10:386343-386657	386343-386657	99.4%	223.46	201.12	185.16	217.08	472.47	255.39	212.29	201.12	363.93	0.78	0.82	1.51	0.86	-0.01	Matched[3172]
YJL031C	BET4	Alpha subunit of Type II geranylgeranyltransferase required for vesicular transport between the endoplasmic reticulum and the Golgi; provides a membrane attachment moiety to Rab-like proteins Ypt1p and Sec4p	Verified	chr10:386363-387433	386363-387343,387431-387433	99.5%	170.51	142.94	150.09	178.68	374.71	222.58	156.73	164.38	298.65	0.58	0.67	1.24	0.86	0.53	Frag>80[3172,3173]
YJL030W	MAD2	"Component of the spindle-assembly checkpoint complex, which delays the onset of anaphase in cells with defects in mitotic spindle assembly; forms a complex with Mad1p"	Verified	chr10:387652-388242	387652-388242	98.6%	209.35	193.91	187.04	169.88	327.76	247.10	201.63	178.46	287.43	0.74	0.72	1.19	0.69	0.59	Covered/w/another[3174]
YJL029C	VPS53	"Component of the GARP (Golgi-associated retrograde protein) complex, Vps51p-Vps52p-Vps53p-Vps54p, which is required for the recycling of proteins from endosomes to the late Golgi; required for vacuolar protein sorting"	Verified	chr10:388380-390848	388380-390848	99.0%	148.89	148.48	132.53	130.08	142.35	133.35	148.69	131.30	137.85	0.55	0.53	0.57	0.07	0.36	Covered/w/another[3174]
YJL028W		"Protein of unknown function; may interact with ribosomes, based on co-purification experiments"	Verified	chr10:391306-391641	391306-391641	98.9%	6.02	3.01	0.00	3.01	0.00	9.02	4.51	1.50	4.51	0.02	0.01	0.02	1.58	0.15	
YJL027C		Putative protein of unknown function	Uncharacterized	chr10:391828-392244	391828-392244	98.2%	4.88	17.09	4.88	4.88	4.88	9.77	10.99	4.88	7.33	0.04	0.02	0.03	0.58	0.76	Overlap[3175]
YJL026W	RNR2	"Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits"	Verified	chr10:392399-393598	392399-393598	98.7%	1452.09	1937.53	1446.18	1459.69	1187.84	1049.39	1694.81	1452.93	1118.62	6.26	5.90	4.63	-0.38	-0.06	Matched[3175]
YJL026C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified gene YJL026W/RNR2"	Dubious	chr10:393061-393282	393061-393282	98.8%	1649.83	2014.43	1590.58	1718.19	1321.69	1194.08	1832.13	1654.39	1257.88	6.76	6.72	5.21	-0.40	NaN	Covered/w/another[3175]
YJL025W	RRN7	"Protein involved in the transcription of 35S rRNA genes by RNA polymerase I; component of the core factor (CF) complex also composed of Rrn11p, Rrn6p and TATA-binding protein"	Verified	chr10:393962-395506	393962-395506	98.8%	58.95	75.98	49.12	40.61	24.89	38.64	67.46	44.87	31.77	0.25	0.18	0.13	-0.50	0.10	Matched[3176]
YJL024C	APS3	"Small subunit of the clathrin-associated adaptor complex AP-3, which is involved in vacuolar protein sorting; related to the sigma subunit of the mammalian clathrin AP-3 complex; suppressor of loss of casein kinase 1 function"	Verified	chr10:395926-396587	395926-396488,396566-396587	99.2%	165.51	146.54	158.61	122.40	201.71	177.57	156.02	140.51	189.64	0.58	0.57	0.79	0.43	0.17	Matched[3177]
YJL022W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene PET130"	Dubious	chr10:398104-398412	398104-398412	99.2%	52.20	68.51	32.62	19.57	52.20	29.36	60.35	26.10	40.78	0.22	0.11	0.17	0.64	0.80	Covered/w/another[3178]
YJL023C	PET130	"Protein required for respiratory growth; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr10:397350-398393	397350-398393	99.3%	72.33	79.08	72.33	46.29	96.44	54.97	75.70	59.31	75.70	0.28	0.24	0.31	0.35	0.52	Matched[3178]
YJL020W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified gene YJL020C/BBC1"	Dubious	chr10:400976-401233	400976-401233	99.4%	183.33	198.93	226.23	214.53	234.03	460.26	191.13	220.38	347.15	0.71	0.89	1.44	0.66	NaN	Covered/w/another[3179]
YJL020C	BBC1	Protein possibly involved in assembly of actin patches; interacts with an actin assembly factor Las17p and with the SH3 domains of Type I myosins Myo3p and Myo5p; localized predominantly to cortical actin patches	Verified	chr10:398932-402405	398932-402405	97.7%	241.78	308.92	281.83	282.42	386.66	567.78	275.35	282.12	477.22	1.02	1.15	1.98	0.76	1.62	Matched[3179]
YJL019W	MPS3	"Essential integral membrane protein required for spindle pole body duplication and for nuclear fusion, localizes to the spindle pole body half bridge, interacts with DnaJ-like chaperone Jem1p and with centrin homolog Cdc31p"	Verified	chr10:402892-404940	402892-404940	98.7%	76.16	54.90	61.33	53.41	25.72	26.71	65.53	57.37	26.21	0.24	0.23	0.11	-1.13	-0.25	Matched[3180]
YJL016W		Putative protein of unknown function; GFP-fusion protein localizes to the cytoplasm; conserved in closely related Saccharomyces species	Uncharacterized	chr10:405583-407268	405583-407268	99.0%	161.22	221.76	130.06	103.69	443.51	286.48	191.49	116.87	365.00	0.71	0.47	1.51	1.64	1.74	Matched[3181]
YJL015C		"Dubious open reading frame unlikely to encode a functional protein; expression if heat-inducible; located in promoter region of essential CCT3 gene encoding a subunit of the cytosolic chaperonin Cct ring complex, overlaps ORF YJL016W"	Dubious	chr10:407137-407511	407137-407511	99.3%	110.05	174.48	123.48	77.84	370.43	185.21	142.27	100.66	277.82	0.53	0.41	1.15	1.46	0.25	Overlap[3181,3182]
YJL014W	CCT3	"Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo"	Verified	chr10:407552-409156	407552-409156	98.6%	543.37	332.34	428.38	410.69	278.64	199.03	437.86	419.53	238.83	1.62	1.70	0.99	-0.81	-0.68	Matched[3182]
YJL013C	MAD3	"Subunit of the spindle-assembly checkpoint complex, which delays anaphase onset in cells with defects in mitotic spindle assembly; pseudosubstrate inhibitor of APC(Cdc20), the anaphase promoting complex involved in securin (Pds1p) turnover"	Verified	chr10:409487-411034	409487-411034	99.4%	89.72	109.22	104.02	79.32	122.23	74.77	99.47	91.67	98.50	0.37	0.37	0.41	0.10	0.30	Matched[3183]
YJL012C	VTC4	Vacuolar membrane protein involved in vacuolar polyphosphate accumulation; functions as a regulator of vacuolar H+-ATPase activity and vacuolar transporter chaperones; involved in non-autophagic vacuolar fusion	Verified	chr10:411228-413393	411228-413393	99.2%	1145.30	968.38	1182.54	1083.38	432.98	356.16	1056.84	1132.96	394.57	3.90	4.60	1.63	-1.52	-0.97	Frag>80[3184,3185]
YJL011C	RPC17	"RNA polymerase III subunit C17; physically interacts with C31, C11, and TFIIIB70; may be involved in the recruitment of pol III by the preinitiation complex"	Verified	chr10:414279-414764	414279-414764	99.4%	146.97	109.71	124.20	76.59	14.49	16.56	128.34	100.40	15.53	0.47	0.41	0.06	-2.69	-2.21	Matched[3186]
YJL010C		Essential nucleolar protein required for 18S rRNA synthesis	Uncharacterized	chr10:417556-419556	417556-419556	99.3%	154.00	96.13	107.20	86.06	12.58	14.09	125.07	96.63	13.34	0.46	0.39	0.06	-2.86	-2.48	Matched[3188]
YJL009W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps CCT8/YJL008C, a verified gene encoding a subunit of the cytosolic chaperonin Cct ring complex"	Dubious	chr10:419849-420175	419849-420175	99.4%	886.49	671.03	652.56	606.39	504.81	313.97	778.76	629.47	409.39	2.87	2.56	1.70	-0.62	-0.03	Matched[3189]
YJL008C	CCT8	"Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo"	Verified	chr10:419951-421657	419951-421657	99.2%	539.84	382.14	472.51	430.58	259.29	235.07	460.99	451.54	247.18	1.70	1.83	1.02	-0.87	-0.51	Frag>80[3189,3190]
YJL007C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr10:422692-423006	422692-423006	81.9%	15.51	11.63	0.00	3.88	3.88	0.00	13.57	1.94	1.94	0.05	0.01	0.01	0.00	0.04	
YJL006C	CTK2	"Beta subunit of C-terminal domain kinase I (CTDK-I), which phosphorylates the C-terminal repeated domain of the RNA polymerase II large subunit (Rpo21p) to affect both transcription and pre-mRNA 3' end processing; has similarity to cyclins"	Verified	chr10:423132-424103	423132-424103	99.2%	87.10	68.43	69.47	50.81	61.17	42.51	77.76	60.14	51.84	0.29	0.24	0.21	-0.21	-0.26	Matched[3192]
YJL005W	CYR1	"Adenylate cyclase, required for cAMP production and cAMP-dependent protein kinase signaling; the cAMP pathway controls a variety of cellular processes, including metabolism, cell cycle, stress response, stationary phase, and sporulation"	Verified	chr10:425151-431231	425151-431231	98.8%	106.00	153.25	114.15	117.31	144.93	238.61	129.62	115.73	191.77	0.48	0.47	0.79	0.73	0.83	Frag>80[3193,3194]
YJL004C	SYS1	Integral membrane protein of the Golgi required for targeting of the Arf-like GTPase Arl3p to the Golgi; multicopy suppressor of ypt6 null mutation	Verified	chr10:431583-432194	431583-432194	99.1%	229.14	225.84	245.62	173.09	253.86	153.31	227.49	209.36	203.59	0.84	0.85	0.84	-0.04	-0.53	Matched[3195]
YJL003W	COX16	"Mitochondrial inner membrane protein, required for assembly of cytochrome c oxidase"	Verified	chr10:432638-432994	432638-432994	98.5%	218.93	261.58	233.15	244.52	446.39	326.98	240.26	238.83	386.68	0.89	0.97	1.60	0.70	0.01	Matched[3197]
YJL002C	OST1	"Alpha subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes asparagine-linked glycosylation of newly synthesized proteins"	Verified	chr10:433215-434645	433215-434645	98.8%	956.12	894.60	956.83	955.42	580.61	461.80	925.36	956.12	521.20	3.42	3.88	2.16	-0.88	-0.27	Matched[3198]
YJL001W	PRE3	"20S proteasome beta-type subunit, responsible for cleavage after acidic residues in peptides"	Verified	chr10:435157-435920	435157-435221,435338-435920	98.8%	771.87	626.56	779.69	695.31	1501.56	781.25	699.22	737.50	1141.41	2.58	2.99	4.73	0.63	0.29	Matched[3200]
YJR001W	AVT1	"Vacuolar transporter, imports large neutral amino acids into the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters"	Verified	chr10:436796-438604	436796-438604	98.9%	314.20	350.54	304.14	276.74	246.55	171.64	332.37	290.44	209.09	1.23	1.18	0.87	-0.47	-0.41	Matched[3202]
YJR002W	MPP10	"Component of the SSU processome, which is required for pre-18S rRNA processing, interacts with and controls the stability of Imp3p and Imp4p, essential for viability; similar to human Mpp10p"	Verified	chr10:438858-440639	438858-440639	98.4%	267.55	144.33	190.54	139.20	31.38	11.98	205.94	164.87	21.68	0.76	0.67	0.09	-2.93	-2.60	Frag>80[3203]
YJR003C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr10:440987-442546	440987-442546	99.2%	155.14	132.51	120.88	100.19	31.67	26.50	143.83	110.54	29.09	0.53	0.45	0.12	-1.93	-1.78	Matched[3204]
YJR004C	SAG1	"Alpha-agglutinin of alpha-cells, binds to Aga1p during agglutination, N-terminal half is homologous to the immunoglobulin superfamily and contains binding site for a-agglutinin, C-terminal half is highly glycosylated and contains GPI anchor"	Verified	chr10:442902-444854	442902-444854	98.7%	91.80	95.95	78.32	54.98	46.68	36.31	93.88	66.65	41.49	0.35	0.27	0.17	-0.68	0.12	Matched[3205]
YJR005W	APL1	"Beta-adaptin, large subunit of the clathrin associated protein complex (AP-2); involved in vesicle mediated transport; similar to mammalian beta-chain of the clathrin associated protein complex"	Verified	chr10:445916-448018	445916-448018	99.0%	154.18	141.69	140.25	128.24	146.02	122.48	147.94	134.25	134.25	0.55	0.54	0.56	0.00	0.20	Matched[3206]
YJR005C-A		"Putative protein of unknown function, originally identified as a syntenic homolog of an <i>Ashbya gossypii</i> gene"	Uncharacterized	chr10:448470-448751	448470-448751	99.6%	0.00	3.56	0.00	0.00	92.55	32.04	1.78	0.00	62.30	0.01	0.00	0.26	Inf	NaN	Matched[3207]
YJR006W	POL31	"DNA polymerase III (delta) subunit, essential for cell viability; involved in DNA replication and DNA repair"	Verified	chr10:449195-450658	449195-450658	98.7%	154.34	175.80	155.73	131.50	198.64	157.80	165.07	143.62	178.22	0.61	0.58	0.74	0.31	0.38	Matched[3208]
YJR007W	SUI2	"Alpha subunit of the translation initiation factor eIF2, involved in the identification of the start codon; phosphorylation of Ser51 is required for regulation of translation by inhibiting the exchange of GDP for GTP"	Verified	chr10:451013-451927	451013-451927	98.9%	781.22	622.10	741.44	664.09	339.23	232.04	701.66	702.76	285.64	2.59	2.85	1.18	-1.30	-0.97	Matched[3209]
YJR008W		Putative protein of unknown function; expression repressed by inosine and choline in an Opi1p-dependent manner; expression induced by mild heat-stress on a non-fermentable carbon source.	Uncharacterized	chr10:452423-453439	452423-453439	98.7%	84.66	164.35	104.59	101.60	747.04	539.86	124.51	103.09	643.45	0.46	0.42	2.67	2.64	1.49	Matched[3210]
YJR009C	TDH2	"Glyceraldehyde-3-phosphate dehydrogenase, isozyme 2, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall"	Verified	chr10:453676-454674	453676-454674	26.4%	27861.41	29213.10	25226.39	22344.57	9484.58	6109.16	28537.26	23785.47	7796.87	105.34	96.55	32.31	-1.61	-1.90	Frag>80[3211,3212]
YJR010W	MET3	"ATP sulfurylase, catalyzes the primary step of intracellular sulfate activation, essential for assimilatory reduction of sulfate to sulfide, involved in methionine metabolism"	Verified	chr10:456232-457767	456232-457767	98.8%	65.21	85.63	67.18	41.50	65.87	42.15	75.42	54.34	54.01	0.28	0.22	0.22	-0.01	0.23	Matched[3214]
YJR010C-A	SPC1	"Subunit of the signal peptidase complex (SPC), which cleaves the signal sequence from proteins targeted to the endoplasmic reticulum (ER), homolog of the SPC12 subunit of mammalian signal peptidase complex"	Verified	chr10:458070-458354	458070-458354	99.0%	272.77	343.62	311.73	304.65	240.89	233.80	308.19	308.19	237.34	1.14	1.25	0.98	-0.38	-0.66	Matched[3215]
YJR011C		Putative protein of unknown function; GFP-fusion protein expression is induced in response to the DNA-damaging agent MMS	Uncharacterized	chr10:458634-459419	458634-459419	99.5%	67.80	83.15	62.68	72.91	70.35	86.98	75.47	67.80	78.67	0.28	0.28	0.33	0.21	0.58	Covered/w/another[3216]
YJR013W	GPI14	"Glycosylphosphatidylinositol-alpha 1,4 mannosyltransferase I, involved in GPI anchor biosynthesis, requires Pbn1p for function; homolog of mammalian PIG-M"	Verified	chr10:460375-461586	460375-461586	99.0%	165.07	170.07	188.41	161.73	142.56	95.04	167.57	175.07	118.80	0.62	0.71	0.49	-0.56	-0.47	Covered/w/another[3216]
YJR012C		"Putative protein of unknown function; proposed involvement in transport based on mass spectrometry analysis of copurifying proteins; partially overlaps neighboring ORF, GPI14/YJR013W"	Uncharacterized	chr10:459788-460411	459788-460411	99.1%	95.45	127.81	118.10	118.10	122.95	88.98	111.63	118.10	105.97	0.41	0.48	0.44	-0.16	-0.10	Covered/w/another[3216]
YJR014W	TMA22	"Protein of unknown function that associates with ribosomes and has a putative RNA binding domain; interacts with Tma20p; has homology to human protein DRP1, which interacts with human Tma20p homolog MCT-1"	Verified	chr10:461822-462418	461822-462418	98.2%	837.94	684.35	694.59	650.22	657.04	505.16	761.15	672.40	581.10	2.81	2.73	2.41	-0.21	0.17	Matched[3217]
YJR015W		Putative protein of unknown function; localizes to the endoplasmic reticulum and cytoplasm; predicted to encode a membrane transporter based on phylogenetic analysis; YJR015W is a non-essential gene	Uncharacterized	chr10:462714-464246	462714-464246	98.9%	526.83	539.36	502.43	489.24	307.92	258.47	533.09	495.84	283.19	1.97	2.01	1.17	-0.81	-0.60	Matched[3218]
YJR016C	ILV3	"Dihydroxyacid dehydratase, catalyzes third step in the common pathway leading to biosynthesis of branched-chain amino acids"	Verified	chr10:464444-466201	464444-466201	98.8%	1392.20	1578.67	1152.20	1207.45	142.15	101.29	1485.43	1179.83	121.72	5.48	4.79	0.50	-3.28	-2.13	Matched[3219]
YJR018W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr10:466779-467141	466779-467141	98.6%	438.65	508.50	435.86	455.41	444.24	424.68	473.57	445.63	434.46	1.75	1.81	1.80	-0.04	-0.13	Frag<80[3220]
YJR017C	ESS1	Peptidylprolyl-cis/trans-isomerase (PPIase) specific for phosphorylated serine and threonine residues N-terminal to proline; regulates phosphorylation of the RNA polymerase II large subunit (Rpo21p) C-terminal domain	Verified	chr10:466514-467026	466514-467026	98.7%	630.12	782.22	630.12	669.63	641.98	653.83	706.17	649.88	647.90	2.61	2.64	2.68	-0.00	0.36	Matched[3220]
YJR020W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr10:467994-468326	467994-468326	98.5%	33.55	70.15	51.85	57.95	76.25	61.00	51.85	54.90	68.62	0.19	0.22	0.28	0.32	0.27	Covered/w/another[3221]
YJR019C	TES1	Peroxisomal acyl-CoA thioesterase likely to be involved in fatty acid oxidation rather than fatty acid synthesis; conserved protein also found in human peroxisomes; TES1 mRNA levels increase during growth on fatty acids	Verified	chr10:467225-468274	467225-468274	98.3%	66.83	89.11	79.42	85.23	116.23	84.26	77.97	82.33	100.25	0.29	0.33	0.42	0.28	0.72	Covered/w/another[3221]
YJR021C	REC107	Protein involved in early stages of meiotic recombination; involved in coordination between the initiation of recombination and the first division of meiosis; part of a complex (Rec107p-Mei4p-Rec114p) required for ds break formation	Verified	chr10:468548-469572	468548-469176,469257-469572	99.0%	125.07	145.38	126.14	94.07	222.34	160.34	135.22	110.10	191.34	0.50	0.45	0.79	0.80	0.82	Covered/w/another[3221]
YJR022W	LSM8	"Lsm (Like Sm) protein; forms heteroheptameric complex (with Lsm2p, Lsm3p, Lsm4p, Lsm5p, Lsm6p, and Lsm7p) that is part of spliceosomal U6 snRNP and is also implicated in processing of pre-tRNA, pre-snoRNA, and pre-rRNA"	Verified	chr10:469777-470106	469777-470106	98.7%	122.79	113.58	141.21	76.75	196.47	174.98	118.19	108.98	185.73	0.44	0.44	0.77	0.77	0.21	Matched[3222]
YJR023C		Putative protein of unknown function; open reading frame overlaps LSM8/YJR022W encoding an essential snRNP protein required for RNA processing and splicing	Dubious	chr10:469797-470198	469797-470198	90.2%	121.37	96.54	159.98	88.27	193.08	159.98	108.95	124.12	176.53	0.40	0.50	0.73	0.51	0.29	Matched[3222]
YJR024C		Putative methylthio-ribulose-1-phosphate dehydratase; acts in the methionine salvage pathway; potential Smt3p sumoylation substrate; expression downregulated by caspofungin and deletion mutant is caspofungin resistant	Uncharacterized	chr10:470223-470957	470223-470957	99.0%	311.92	237.72	309.17	252.83	252.83	185.50	274.82	281.00	219.17	1.01	1.14	0.91	-0.36	-0.72	Matched[3223]
YJR025C	BNA1	"3-hydroxyanthranilic acid dioxygenase, required for biosynthesis of nicotinic acid from tryptophan via kynurenine pathway"	Verified	chr10:471131-471664	471131-471664	99.3%	760.20	1480.78	752.65	811.13	1165.76	773.40	1120.49	781.89	969.58	4.14	3.17	4.02	0.31	-0.07	Matched[3224]
YJR030C		Putative protein of unknown function; expression repressed in carbon limited vs carbon replete chemostat cultures; YJR030C is a non-essential gene	Uncharacterized	chr10:483952-486189	483952-486189	99.0%	129.02	123.61	107.82	87.52	64.06	60.00	126.32	97.67	62.03	0.47	0.40	0.26	-0.65	0.24	Matched[3227]
YJR031C	GEA1	"Guanine nucleotide exchange factor for ADP ribosylation factors (ARFs), involved in vesicular transport between the Golgi and ER, Golgi organization, and actin cytoskeleton organization; similar to but not functionally redundant with Gea2p"	Verified	chr10:486579-490805	486579-490805	99.2%	62.74	67.28	48.43	55.83	22.19	19.56	65.01	52.13	20.87	0.24	0.21	0.09	-1.32	-0.96	Matched[3228]
YJR032W	CPR7	"Peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds to Hsp82p and contributes to chaperone activity"	Verified	chr10:491074-492255	491074-492255	98.7%	160.31	150.03	147.45	169.74	137.17	93.45	155.17	158.60	115.31	0.57	0.64	0.48	-0.46	-0.43	Covered[3229]
YJR033C	RAV1	"Subunit of the RAVE complex (Rav1p, Rav2p, Skp1p), which promotes assembly of the V-ATPase holoenzyme; required for transport between the early and late endosome/PVC and for localization of TGN membrane proteins; potential Cdc28p substrate"	Verified	chr10:492371-496444	492371-496444	99.1%	67.16	90.45	75.33	75.33	88.96	103.58	78.80	75.33	96.27	0.29	0.31	0.40	0.35	0.76	Frag<80[3230,3231]
YJR034W	PET191	"Protein required for assembly of cytochrome c oxidase; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr10:496676-497002	496676-497002	98.3%	242.61	214.62	233.28	217.73	348.37	223.95	228.62	225.51	286.16	0.84	0.92	1.19	0.34	-0.24	Matched[3231]
YJR035W	RAD26	Protein involved in transcription-coupled repair nucleotide excision repair of UV-induced DNA lesions; homolog of human CSB protein	Verified	chr10:497348-500605	497348-500605	98.5%	49.84	57.94	41.43	40.81	57.32	58.57	53.89	41.12	57.94	0.20	0.17	0.24	0.49	1.11	Covered/w/another[3232]
YJR037W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified gene HUL4/YJR036C; YJR037W is not an essential gene."	Dubious	chr10:503095-503478	503095-503478	99.0%	10.53	34.21	15.79	13.16	65.79	52.63	22.37	14.47	59.21	0.08	0.06	0.25	2.03	0.10	Covered/w/another[3232]
YJR036C	HUL4	"Protein with similarity to hect domain E3 ubiquitin-protein ligases, not essential for viability"	Verified	chr10:500706-503384	500706-503384	99.3%	20.67	33.45	29.70	28.94	114.27	94.72	27.06	29.32	104.50	0.10	0.12	0.43	1.83	1.69	Covered/w/another[3232]
YJR039W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr10:503929-507294	503929-507294	98.8%	33.36	47.49	39.07	31.86	91.07	76.64	40.43	35.47	83.86	0.15	0.14	0.35	1.24	1.09	Covered/w/another[3232]
YJR038C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr10:503703-504065	503703-504065	97.8%	19.72	19.72	14.08	14.08	45.07	42.25	19.72	14.08	43.66	0.07	0.06	0.18	1.63	1.74	Covered/w/another[3232]
YJR040W	GEF1	"Chloride channel localized to late- or post-Golgi vesicles, involved in iron metabolism; highly homologous to voltage-gated chloride channels in vertebrates"	Verified	chr10:507739-510078	507739-510078	98.8%	136.31	140.21	138.91	106.46	124.63	97.37	138.26	122.68	111.00	0.51	0.50	0.46	-0.14	0.21	Matched[3233]
YJR041C	URB2	"Nucleolar protein required for normal metabolism of the rRNA primary transcript, proposed to be involved in ribosome biogenesis"	Verified	chr10:510232-513756	510232-513756	99.1%	100.17	62.10	62.68	55.52	6.87	1.72	81.14	59.10	4.29	0.30	0.24	0.02	-3.78	-2.76	Frag>80[3234,3235]
YJR042W	NUP85	"Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), required for assembly of the subcomplex and also for formation of the nucleocytoplasmic Gsp1p concentration gradient that plays a role in nuclear trafficking"	Verified	chr10:514048-516282	514048-516282	98.7%	192.67	153.68	160.93	147.79	91.57	79.33	173.17	154.36	85.45	0.64	0.63	0.35	-0.85	-0.41	Matched[3236]
YJR043C	POL32	"Third subunit of DNA polymerase delta, involved in chromosomal DNA replication; required for error-prone DNA synthesis in the presence of DNA damage and processivity; interacts with Hys2p, PCNA (Pol30p), and Pol1p"	Verified	chr10:516454-517506	516454-517506	99.2%	194.37	139.80	131.18	126.39	67.03	37.34	167.09	128.79	52.18	0.62	0.52	0.22	-1.30	-0.89	Matched[3237]
YJR044C	VPS55	Late endosomal protein involved in late endosome to vacuole trafficking; functional homolog of human obesity receptor gene-related protein (OB-RGRP)	Verified	chr10:518756-519178	518756-519178	98.8%	492.82	497.61	564.59	516.75	767.94	409.09	495.22	540.67	588.52	1.83	2.19	2.44	0.12	0.20	Frag>80[3238,3239,3240,3241]
YJR045C	SSC1	"Mitochondrial matrix ATPase, subunit of the presequence translocase-associated protein import motor (PAM) and of SceI endonuclease; involved in protein folding and translocation into the matrix; phosphorylated; member of HSP70 family"	Verified	chr10:519631-521595	519631-521595	98.5%	2282.84	2168.67	2476.04	2424.38	7262.82	7950.41	2225.75	2450.21	7606.61	8.22	9.95	31.52	1.63	1.37	Frag>80[3240,3241,3242]
YJR046W	TAH11	"DNA replication licensing factor, required for pre-replication complex assembly"	Verified	chr10:522041-523855	522041-523855	98.6%	135.27	136.95	116.83	97.26	836.24	633.33	136.11	107.05	734.79	0.50	0.43	3.04	2.78	2.70	Matched[3243]
YJR047C	ANB1	"Translation initiation factor eIF-5A, promotes formation of the first peptide bond; similar to and functionally redundant with Hyp2p; undergoes an essential hypusination modification; expressed under anaerobic conditions"	Verified	chr10:524901-525374	524901-525374	76.8%	192.22	2583.98	167.51	186.73	189.47	236.16	1388.10	177.12	212.81	5.12	0.72	0.88	0.26	0.20	Matched[3245]
YJR048W	CYC1	"Cytochrome c, isoform 1; electron carrier of the mitochondrial intermembrane space that transfers electrons from ubiquinone-cytochrome c oxidoreductase to cytochrome c oxidase during cellular respiration"	Verified	chr10:526328-526657	526328-526657	91.2%	262.35	152.76	282.27	222.50	109.59	116.23	207.55	252.39	112.91	0.77	1.02	0.47	-1.16	-0.96	Matched[3246]
YJR049C	UTR1	ATP-NADH kinase; phosphorylates both NAD and NADH; active as a hexamer; enhances the activity of ferric reductase (Fre1p)	Verified	chr10:526877-528469	526877-528469	99.1%	257.15	307.18	238.78	226.11	342.02	277.41	282.16	232.44	309.71	1.04	0.94	1.28	0.41	0.68	Covered/w/another[3247]
YJR050W	ISY1	"Component of the spliceosome complex involved in pre-mRNA splicing, auxiliary splicing factor that may modulate Syf1p activity and help optimize splicing; isy1 syf2 double mutation activates the spindle checkpoint, causing cell cycle arrest"	Verified	chr10:528690-529397	528690-529397	98.2%	136.59	159.60	122.21	130.84	162.47	100.65	148.09	126.53	131.56	0.55	0.51	0.55	0.06	0.07	Covered/w/another[3247]
YJR051W	OSM1	"Fumarate reductase, catalyzes the reduction of fumarate to succinate, required for the reoxidation of intracellular NADH under anaerobic conditions; mutations cause osmotic sensitivity"	Verified	chr10:529854-531359	529854-531359	98.8%	207.74	248.07	219.84	253.45	252.78	227.91	227.91	236.65	240.34	0.84	0.96	1.00	0.02	0.45	Matched[3248]
YJR052W	RAD7	Protein that recognizes and binds damaged DNA in an ATP-dependent manner (with Rad16p) during nucleotide excision repair; subunit of Nucleotide Excision Repair Factor 4 (NEF4) and the Elongin-Cullin-Socs (ECS) ligase complex	Verified	chr10:532055-533752	532055-533752	98.6%	75.24	61.50	69.27	66.28	134.35	111.66	68.37	67.77	123.01	0.25	0.28	0.51	0.86	1.12	Matched[3249]
YJR053W	BFA1	Component of the GTPase-activating Bfa1p-Bub2p complex involved in multiple cell cycle checkpoint pathways that control exit from mitosis	Verified	chr10:534020-535744	534020-535744	98.6%	16.46	26.45	15.87	19.98	18.22	22.92	21.45	17.93	20.57	0.08	0.07	0.09	0.20	0.85	Covered/w/another[3250]
YJR054W		Vacuolar protein of unknown function; potential Cdc28p substrate	Uncharacterized	chr10:536049-537542	536049-537542	99.0%	133.89	123.74	121.71	122.39	65.59	56.12	128.81	122.05	60.86	0.48	0.50	0.25	-1.00	-0.33	Covered/w/another[3250]
YJR055W	HIT1	"Protein of unknown function, required for growth at high temperature"	Verified	chr10:538765-539259	538765-539259	98.7%	53.22	57.32	57.32	38.89	49.13	8.19	55.27	48.11	28.66	0.20	0.20	0.12	-0.75	-0.99	Covered[3251]
YJR056C		Hypothetical protein	Uncharacterized	chr10:541785-542495	541785-542495	99.3%	94.88	89.22	107.63	83.55	196.85	165.69	92.05	95.59	181.27	0.34	0.39	0.75	0.92	1.22	Matched[3253]
YJR057W	CDC8	"Thymidylate and uridylate kinase, functions in de novo biosynthesis of pyrimidine deoxyribonucleotides; converts dTMP to dTDP and dUMP to dUTP; essential for mitotic and meiotic DNA replication; homologous to S. pombe Tmp1p"	Verified	chr10:544055-544705	544055-544705	98.6%	202.48	183.79	186.90	138.62	186.90	96.57	193.13	162.76	141.74	0.71	0.66	0.59	-0.20	-0.49	Matched[3254]
YJR058C	APS2	"Small subunit of the clathrin-associated adaptor complex AP-2, which is involved in protein sorting at the plasma membrane; related to the sigma subunit of the mammalian plasma membrane clathrin-associated protein (AP-2) complex"	Verified	chr10:544725-545168	544725-545168	99.2%	326.81	365.39	272.34	201.99	603.69	254.18	346.10	237.16	428.94	1.28	0.96	1.78	0.85	-0.06	Matched[3254]
YJR059W	PTK2	Putative serine/threonine protein kinase involved in regulation of ion transport across plasma membrane; enhances spermine uptake	Verified	chr10:545780-548236	545780-548236	98.7%	223.12	273.84	345.19	338.59	612.43	815.34	248.48	341.89	713.89	0.92	1.39	2.96	1.06	1.83	Matched[3255]
YJR060W	CBF1	"Helix-loop-helix protein that binds the motif CACRTG, which is present at several sites including MET gene promoters and centromere DNA element I (CDEI); required for nucleosome positioning at this motif; targets Isw1p to DNA"	Verified	chr10:548752-549807	548752-549807	97.9%	218.60	192.49	218.60	235.05	226.34	222.47	205.55	226.83	224.41	0.76	0.92	0.93	-0.02	0.59	Matched[3256]
YJR061W		"Putative protein of unknown function; non-essential gene with similarity to Mnn4, a putative membrane protein involved in glycosylation; transcription repressed by Rm101p"	Uncharacterized	chr10:550504-553311	550504-553311	98.8%	59.81	68.82	48.64	27.74	83.23	49.00	64.32	38.19	66.12	0.24	0.16	0.27	0.79	-0.35	Frag>80[3257]
YJR062C	NTA1	"Amidase, removes the amide group from N-terminal asparagine and glutamine residues to generate proteins with N-terminal aspartate and glutamate residues that are targets of ubiquitin-mediated degradation"	Verified	chr10:553469-554842	553469-554842	99.3%	137.82	139.28	141.48	151.01	255.11	219.92	138.55	146.25	237.51	0.51	0.59	0.98	0.70	1.09	Matched[3258]
YJR063W	RPA12	"RNA polymerase I subunit A12.2; contains two zinc binding domains, and the N terminal domain is responsible for anchoring to the RNA pol I complex"	Verified	chr10:555188-555565	555188-555565	98.8%	425.85	281.22	321.39	238.37	18.75	40.17	353.53	279.88	29.46	1.31	1.14	0.12	-3.25	-3.00	Matched[3259]
YJR064W	CCT5	"Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo"	Verified	chr10:555907-557595	555907-557595	98.7%	679.13	536.95	598.14	524.95	325.77	218.38	608.04	561.54	272.07	2.24	2.28	1.13	-1.05	-1.07	Matched[3260]
YJR065C	ARP3	"Essential component of the Arp2/3 complex, which is a highly conserved actin nucleation center required for the motility and integrity of actin patches; involved in endocytosis and membrane growth and polarity"	Verified	chr10:557802-559151	557802-559151	98.8%	662.00	778.21	713.73	686.74	1011.37	908.66	720.10	700.24	960.01	2.66	2.84	3.98	0.46	0.73	Matched[3261]
YJR066W	TOR1	"PIK-related protein kinase and rapamycin target; subunit of TORC1, a complex that controls growth in response to nutrients by regulating translation, transcription, ribosome biogenesis, nutrient transport and autophagy; involved in meiosis"	Verified	chr10:559409-566821	559409-566821	98.8%	52.03	59.27	48.48	51.49	32.50	94.92	55.65	49.98	63.71	0.21	0.20	0.26	0.35	0.42	Matched[3262]
YJR067C	YAE1	Essential protein of unknown function	Verified	chr10:567012-567437	567012-567437	99.5%	141.58	108.54	122.70	89.67	96.75	68.43	125.06	106.18	82.59	0.46	0.43	0.34	-0.36	-0.56	Covered/w/another[3262]
YJR068W	RFC2	"Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon"	Verified	chr10:567636-568697	567636-568697	98.8%	351.67	261.13	270.66	252.55	215.38	169.64	306.40	261.61	192.51	1.13	1.06	0.80	-0.44	-0.72	Matched[3263]
YJR069C	HAM1	"Conserved protein with deoxyribonucleoside triphosphate pyrophosphohydrolase activity, mediates exclusion of noncanonical purines from deoxyribonucleoside triphosphate pools; mutant is sensitive to the base analog 6-N-hydroxylaminopurine"	Verified	chr10:568799-569392	568799-569392	99.1%	404.13	378.66	385.45	366.78	186.78	140.94	391.40	376.11	163.86	1.44	1.53	0.68	-1.20	-1.04	Covered/w/another[3263]
YJR071W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr10:570398-570766	570398-570766	99.3%	455.92	319.42	360.37	253.90	38.22	32.76	387.67	307.13	35.49	1.43	1.25	0.15	-3.11	-2.10	Matched[3265]
YJR070C	LIA1	"Deoxyhypusine hydroxylase, a HEAT-repeat containing metalloenzyme that catalyses hypusine formation; binds to and is required for the modification of Hyp2p (eIF5A); complements S. pombe mmd1 mutants defective in mitochondrial positioning"	Verified	chr10:569614-570591	569614-570591	98.9%	961.32	662.59	720.48	516.84	75.46	38.25	811.96	618.66	56.85	3.00	2.51	0.24	-3.44	-3.50	Frag>80[3264,3265]
YJR072C	NPA3	"Essential, conserved, cytoplasmic ATPase; phosphorylated by the Pcl1p-Pho85p kinase complex"	Verified	chr10:570960-572117	570960-572117	99.1%	345.12	232.70	258.84	244.03	97.61	98.48	288.91	251.43	98.05	1.07	1.02	0.41	-1.36	-0.81	Matched[3266]
YJR073C	OPI3	"Phospholipid methyltransferase (methylene-fatty-acyl-phospholipid synthase), catalyzes the last two steps in phosphatidylcholine biosynthesis"	Verified	chr10:572308-572928	572308-572928	98.5%	518.19	464.24	568.86	554.15	998.77	836.94	491.21	561.50	917.86	1.81	2.28	3.80	0.71	0.45	Matched[3267]
YJR074W	MOG1	"Conserved nuclear protein that interacts with GTP-Gsp1p, which is a Ran homolog of the Ras GTPase family, and stimulates nucleotide release, involved in nuclear protein import, nucleotide release is inhibited by Yrb1p"	Verified	chr10:573088-573744	573088-573744	98.3%	173.50	99.14	139.42	148.71	280.38	181.24	136.32	144.07	230.81	0.50	0.58	0.96	0.68	0.55	Covered/w/another[3268]
YJR075W	HOC1	"Alpha-1,6-mannosyltransferase involved in cell wall mannan biosynthesis; subunit of a Golgi-localized complex that also contains Anp1p, Mnn9p, Mnn11p, and Mnn10p; identified as a suppressor of a cell lysis sensitive pkc1-371 allele"	Verified	chr10:573974-575164	573974-575164	98.8%	594.96	655.31	579.66	547.37	363.78	326.38	625.14	563.52	345.08	2.31	2.29	1.43	-0.71	-0.24	Covered/w/another[3268]
YJR076C	CDC11	"Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recruit proteins to the neck and can act as a barrier to diffusion at the membrane, and they comprise the 10nm filaments seen with EM"	Verified	chr10:575347-576594	575347-576594	99.1%	392.22	318.63	396.27	380.90	341.27	313.78	355.43	388.58	327.53	1.31	1.58	1.36	-0.25	0.04	Covered/w/another[3268]
YJR077C	MIR1	"Mitochondrial phosphate carrier, imports inorganic phosphate into mitochondria; functionally redundant with Pic2p but more abundant than Pic2p under normal conditions; phosphorylated"	Verified	chr10:577248-578183	577248-578183	98.2%	920.48	659.35	948.77	1142.44	855.20	786.65	789.92	1045.61	820.93	2.92	4.24	3.40	-0.35	-0.02	Frag>80[3269,3270,3271]
YJR078W	BNA2	"Tryptophan 2,3-dioxygenase, required for biosynthesis of nicotinic acid from tryptophan via kynurenine pathway"	Verified	chr10:578853-580214	578853-580214	98.3%	22.41	25.39	30.62	23.15	34.36	35.85	23.90	26.89	35.10	0.09	0.11	0.15	0.38	0.82	Frag>80[3272]
YJR079W		Putative protein of unknown function; mutation results in impaired mitochondrial respiration	Uncharacterized	chr10:580198-581232	580198-580340,581046-581232	99.1%	165.18	174.36	195.77	208.00	226.36	183.53	169.77	201.89	204.95	0.63	0.82	0.85	0.02	0.10	Covered/w/another[3273]
YJR080C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr10:580425-581609	580425-581609	99.1%	243.59	240.19	251.26	315.99	347.51	269.15	241.89	283.63	308.33	0.89	1.15	1.28	0.12	0.19	Matched[3273]
YJR082C	EAF6	Subunit of the NuA4 acetyltransferase complex that acetylates histone H4 and NuA3 acetyltransferase complex that acetylates histone H3	Verified	chr10:581907-582248	581907-582248	99.1%	297.86	274.27	221.18	262.47	271.32	174.00	286.07	241.83	222.66	1.06	0.98	0.92	-0.12	0.19	Covered/w/another[3273]
YJR083C	ACF4	"Protein of unknown function, computational analysis of large-scale protein-protein interaction data suggests a possible role in actin cytoskeleton organization; potential Cdc28p substrate"	Verified	chr10:582601-583530	582601-583530	99.1%	93.30	115.00	103.06	95.47	118.25	73.77	104.15	99.27	96.01	0.38	0.40	0.40	-0.05	-0.23	Matched[3274]
YJR084W	CSN12	"Subunit of the Cop9 signalosome, which is required for deneddylation, or removal of the ubiquitin-like protein Rub1p from Cdc53p (cullin); involved in adaptation to pheromone signaling"	Verified	chr10:583726-584997	583726-584997	98.6%	136.33	173.00	113.21	103.64	138.72	100.45	154.66	108.42	119.59	0.57	0.44	0.50	0.14	0.08	Matched[3275]
YJR085C		"Putative protein of unknown function; GFP-fusion protein is induced in response to the DNA-damaging agent MMS; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr10:585113-585430	585113-585430	98.7%	914.13	1213.54	955.54	1000.13	2586.33	1567.09	1063.84	977.84	2076.71	3.93	3.97	8.60	1.09	0.27	Matched[3276]
YJR086W	STE18	"G protein gamma subunit, forms a dimer with Ste4p to activate the mating signaling pathway, forms a heterotrimer with Gpa1p and Ste4p to dampen signaling; C-terminus is palmitoylated and farnesylated, which are required for normal signaling"	Verified	chr10:586061-586393	586061-586393	99.1%	551.65	548.62	630.46	536.50	1576.16	800.20	550.14	583.48	1188.18	2.03	2.37	4.92	1.03	0.36	Frag<80[3277]
YJR087W		"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; partially overlaps the verified gene STE18 and uncharacterized ORF YJR088C"	Dubious	chr10:586393-586743	586393-586743	99.5%	532.82	604.44	449.75	489.85	753.40	418.24	568.63	469.80	585.82	2.10	1.91	2.43	0.32	-0.43	Matched[3278]
YJR088C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum	Uncharacterized	chr10:586488-587366	586488-587366	99.4%	409.86	439.63	376.66	385.82	476.27	343.46	424.75	381.24	409.86	1.57	1.55	1.70	0.10	-0.04	Matched[3278]
YJR089W	BIR1	"Essential chromosomal passenger protein involved in coordinating cell cycle events for proper chromosome segregation; C-terminal region binds Sli15p, and the middle region, upon phosphorylation, localizes Cbf2p to the spindle at anaphase"	Verified	chr10:587711-590575	587711-590575	98.7%	83.48	88.08	74.28	66.50	65.79	51.64	85.78	70.39	58.72	0.32	0.29	0.24	-0.26	0.21	Covered/w/another[3279]
YJR090C	GRR1	"F-box protein component of the SCF ubiquitin-ligase complex; involved in carbon catabolite repression, glucose-dependent divalent cation transport, high-affinity glucose transport, morphogenesis, and sulfite detoxification"	Verified	chr10:590865-594320	590865-594320	98.9%	106.18	98.87	88.63	72.54	131.05	120.81	102.53	80.59	125.93	0.38	0.33	0.52	0.64	0.89	Covered/w/another[3279]
YJR091C	JSN1	"Member of the Puf family of RNA-binding proteins, interacts with mRNAs encoding membrane-associated proteins; overexpression suppresses a tub2-150 mutation and causes increased sensitivity to benomyl in wild-type cells"	Verified	chr10:595054-598329	595054-598329	98.8%	145.46	150.71	163.68	157.82	210.94	360.72	148.09	160.75	285.83	0.55	0.65	1.18	0.83	1.78	Matched[3280]
YJR092W	BUD4	Protein involved in bud-site selection and required for axial budding pattern; localizes with septins to bud neck in mitosis and may constitute an axial landmark for next round of budding; potential Cdc28p substrate	Verified	chr10:598728-603074	598728-603074	98.5%	137.72	140.76	106.91	100.84	79.60	113.68	139.24	103.88	96.64	0.51	0.42	0.40	-0.10	0.45	Frag>80[3281]
YJR093C	FIP1	"Subunit of cleavage polyadenylation factor (CPF), interacts directly with poly(A) polymerase (Pap1p) to regulate its activity"	Verified	chr10:603216-604199	603216-604199	98.9%	123.31	141.81	127.42	108.92	115.09	94.54	132.56	118.17	104.81	0.49	0.48	0.43	-0.17	0.35	Matched[3282]
YJR094C	IME1	"Master regulator of meiosis that is active only during meiotic events, activates transcription of early meiotic genes through interaction with Ume6p, degraded by the 26S proteasome following phosphorylation by Ime2p"	Verified	chr10:604565-605647	604565-605647	99.0%	38.25	26.12	30.79	29.86	57.85	42.92	32.19	30.32	50.38	0.12	0.12	0.21	0.73	1.13	Matched[3283]
YJR094W-A	RPL43B	"Protein component of the large (60S) ribosomal subunit, identical to Rpl43Ap and has similarity to rat L37a ribosomal protein"	Verified	chr10:608301-608854	608301-608302,608578-608854	87.2%	6245.51	4375.96	5362.10	4318.44	1725.73	1171.03	5310.73	4840.27	1448.38	19.60	19.65	6.00	-1.74	-2.13	Matched[3286]
YJR095W	SFC1	"Mitochondrial succinate-fumarate transporter, transports succinate into and fumarate out of the mitochondrion; required for ethanol and acetate utilization"	Verified	chr10:609769-610737	609769-610737	98.6%	5.23	6.28	3.14	0.00	14.66	19.89	5.76	1.57	17.27	0.02	0.01	0.07	3.46	2.36	Frag<80[3287]
YJR096W		Putative xylose and arabinose reductase; member of the aldo-keto reductase (AKR) family; GFP-fusion protein is induced in response to the DNA-damaging agent MMS	Verified	chr10:611191-612039	611191-612039	98.5%	131.53	190.13	143.49	147.08	1750.59	1204.13	160.83	145.28	1477.36	0.59	0.59	6.12	3.35	2.97	Matched[3288]
YJR097W	JJJ3	"Protein of unknown function, contains a J-domain, which is a region with homology to the E. coli DnaJ protein"	Verified	chr10:612409-612927	612409-612927	98.7%	56.60	35.13	25.37	11.71	3.90	1.95	45.86	18.54	2.93	0.17	0.08	0.01	-2.66	-1.90	Overlap[3289]
YJR098C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr10:613182-615149	613182-615149	99.2%	25.61	17.42	30.74	21.52	53.79	29.71	21.52	26.13	41.75	0.08	0.11	0.17	0.68	1.03	Matched[3289]
YJR099W	YUH1	Ubiquitin C-terminal hydrolase that cleaves ubiquitin-protein fusions to generate monomeric ubiquitin; hydrolyzes the peptide bond at the C-terminus of ubiquitin; also the major processing enzyme for the ubiquitin-like protein Rub1p	Verified	chr10:615569-616279	615569-616279	98.7%	173.90	172.48	181.03	155.37	267.98	145.39	173.19	168.20	206.69	0.64	0.68	0.86	0.30	0.39	Matched[3290]
YJR100C		"Putative protein of unknown function; appears related to murine NOR1, which is highly expressed in leukemogenic cell lines; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr10:616344-617327	616344-617327	99.2%	128.06	149.57	151.62	123.96	237.67	177.23	138.81	137.79	207.45	0.51	0.56	0.86	0.59	0.31	Matched[3291]
YJR101W	RSM26	Mitochondrial ribosomal protein of the small subunit	Verified	chr10:618227-619027	618227-619027	98.7%	332.72	245.43	320.07	256.81	284.64	173.32	289.07	288.44	228.98	1.07	1.17	0.95	-0.33	-0.69	Matched[3292]
YJR102C	VPS25	"Component of the ESCRT-II complex, which is involved in ubiquitin-dependent sorting of proteins into the endosome"	Verified	chr10:619150-619758	619150-619758	99.3%	109.14	112.45	132.30	100.88	178.60	105.84	110.80	116.59	142.22	0.41	0.47	0.59	0.29	-0.13	Covered[3293]
YJR103W	URA8	"Minor CTP synthase isozyme (see also URA7), catalyzes the ATP-dependent transfer of the amide nitrogen from glutamine to UTP, forming CTP, the final step in de novo biosynthesis of pyrimidines; involved in phospholipid biosynthesis"	Verified	chr10:620747-622441	620747-622441	98.4%	220.62	287.16	232.01	285.96	422.65	579.12	253.89	258.99	500.89	0.94	1.05	2.08	0.95	1.30	Matched[3294]
YJR104C	SOD1	Cytosolic superoxide dismutase; some mutations are analogous to those that cause ALS (amyotrophic lateral sclerosis) in humans	Verified	chr10:622542-623006	622542-623006	98.7%	4818.74	2765.71	5333.09	3552.49	11524.88	7379.59	3792.23	4442.79	9452.23	14.00	18.03	39.16	1.09	0.80	Matched[3295]
YJR105W	ADO1	"Adenosine kinase, required for the utilization of S-adenosylmethionine (AdoMet); may be involved in recycling adenosine produced through the methyl cycle"	Verified	chr10:623573-624595	623573-624595	98.7%	1494.61	992.45	1384.67	1232.14	942.92	819.12	1243.53	1308.41	881.02	4.59	5.31	3.65	-0.57	-0.86	Matched[3297]
YJR106W	ECM27	Non-essential protein of unknown function	Verified	chr10:624830-627007	624830-627007	99.0%	53.31	51.46	40.79	38.94	64.44	66.29	52.38	39.87	65.36	0.19	0.16	0.27	0.71	1.14	Covered[3298]
YJR107W		Putative protein of unknown function; has sequence or structural similarity to lipases	Uncharacterized	chr10:627333-628319	627333-628319	98.7%	95.48	108.83	92.40	50.31	191.99	91.38	102.16	71.36	141.68	0.38	0.29	0.59	0.99	0.63	Frag<80[3299]
YJR108W	ABM1	"Protein of unknown function, required for normal microtubule organization"	Verified	chr10:628706-629077	628706-629077	98.9%	19.03	16.31	21.75	16.31	43.50	24.47	17.67	19.03	33.99	0.07	0.08	0.14	0.84	0.63	Matched[3300]
YJR109C	CPA2	"Large subunit of carbamoyl phosphate synthetase, which catalyzes a step in the synthesis of citrulline, an arginine precursor"	Verified	chr10:629579-632935	629579-632935	99.0%	133.25	395.25	113.40	134.46	50.53	54.44	264.25	123.93	52.49	0.98	0.50	0.22	-1.24	-1.09	Matched[3301]
YJR110W	YMR1	"Phosphatidylinositol 3-phosphate [PI(3)P] phosphatase, regulates the localization and levels of PI(3)P; involved in cytoplasm to vacuole (CVT) transport; has similarity to the conserved myotubularin dual specificity phosphatase family"	Verified	chr10:633609-635675	633609-635675	98.8%	92.58	96.99	91.11	88.17	102.87	62.21	94.79	89.64	82.54	0.35	0.36	0.34	-0.12	-0.05	Covered/w/another[3302]
YJR111C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the mitochondria	Uncharacterized	chr10:635849-636700	635849-636700	98.9%	96.09	138.79	73.55	53.38	55.75	26.10	117.44	63.46	40.93	0.43	0.26	0.17	-0.63	-0.11	Covered/w/another[3302]
YJR112W	NNF1	Essential component of the MIND kinetochore complex (Mtw1p Including Nnf1p-Nsl1p-Dsn1p) which joins kinetochore subunits contacting DNA to those contacting microtubules; required for accurate chromosome segregation	Verified	chr10:637024-637629	637024-637629	98.0%	144.84	160.00	124.63	80.84	45.47	28.63	152.42	102.74	37.05	0.56	0.42	0.15	-1.47	-1.11	Matched[3303]
YJR112W-A		Putative protein of unknown function; identified based on homology to <i>Ashbya gossypii</i>	Uncharacterized	chr10:637784-638162	637784-637803,637853-638162	98.3%	178.76	169.51	157.19	132.53	218.83	98.63	174.14	144.86	158.73	0.64	0.59	0.66	0.13	NaN	Matched[3304]
YJR114W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF RSM7/YJR113C"	Dubious	chr10:638653-639045	638653-639045	98.8%	242.01	267.75	267.75	270.33	450.55	288.35	254.88	269.04	369.45	0.94	1.09	1.53	0.46	0.13	Frag>80[3305,3306]
YJR113C	RSM7	"Mitochondrial ribosomal protein of the small subunit, has similarity to E. coli S7 ribosomal protein"	Verified	chr10:638226-638969	638226-638969	98.5%	313.87	327.51	349.35	292.03	620.91	371.18	320.69	320.69	496.05	1.18	1.30	2.06	0.63	0.48	Matched[3305]
YJR115W		Putative protein of unknown function	Uncharacterized	chr10:639936-640445	639936-640445	94.2%	24.98	39.55	35.39	33.31	374.71	291.44	32.27	34.35	333.07	0.12	0.14	1.38	3.28	3.06	Matched[3308]
YJR116W		Putative protein of unknown function	Uncharacterized	chr10:640819-641658	640819-641658	99.2%	112.86	136.88	94.85	82.85	144.08	128.47	124.87	88.85	136.27	0.46	0.36	0.56	0.62	0.44	Frag>80[3308,3309,3310]
YJR117W	STE24	"Highly conserved zinc metalloprotease that functions in two steps of a-factor maturation, C-terminal CAAX proteolysis and the first step of N-terminal proteolytic processing; contains multiple transmembrane spans"	Verified	chr10:642001-643362	642001-643362	99.3%	455.55	370.51	459.99	426.71	831.23	887.44	413.03	443.35	859.34	1.52	1.80	3.56	0.95	1.08	Matched[3311]
YJR118C	ILM1	Protein of unknown function; may be involved in mitochondrial DNA maintenance; required for slowed DNA synthesis-induced filamentous growth	Verified	chr10:643484-644095	643484-644095	99.2%	536.88	507.24	418.31	423.25	423.25	182.80	522.06	420.78	303.03	1.93	1.71	1.26	-0.47	-0.61	Matched[3312]
YJR119C	JHD2	JmjC domain family histone demethylase specific for H3-K4 (lysine at position 4 of the histone H3 protein); removes methyl groups specifically added by Set1p methyltransferase	Verified	chr10:644298-646484	644298-646484	99.2%	23.98	46.11	35.96	17.06	23.98	22.13	35.04	26.51	23.05	0.13	0.11	0.10	-0.20	0.34	Frag<80[3313,3314]
YJR120W		"Protein of unknown function; essential for growth under anaerobic conditions; mutation causes decreased expression of ATP2, impaired respiration, defective sterol uptake, and altered levels/localization of ABC transporters Aus1p and Pdr11p"	Verified	chr10:647120-647470	647120-647470	98.7%	430.01	450.22	528.14	672.44	427.13	481.96	440.12	600.29	454.55	1.62	2.44	1.88	-0.40	2.13	Frag<80[3315]
YJR121W	ATP2	"Beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis; phosphorylated"	Verified	chr10:647601-649136	647601-649136	98.7%	2593.67	2947.89	2928.76	3624.01	2734.83	2797.49	2770.78	3276.39	2766.16	10.23	13.30	11.46	-0.24	0.02	Matched[3316]
YJR122W	CAF17	Mitochondrial protein that interacts with Ccr4p in the two-hybrid system; 3'-untranslated region contains a putative mRNA localization element common to genes encoding mitochondrial proteins	Verified	chr10:649770-651263	649770-651263	98.8%	90.12	121.29	106.38	88.77	108.42	95.54	105.71	97.57	101.98	0.39	0.40	0.42	0.06	0.16	Matched[3317]
YJR123W	RPS5	"Protein component of the small (40S) ribosomal subunit, the least basic of the non-acidic ribosomal proteins; phosphorylated in vivo; essential for viability; has similarity to E. coli S7 and rat S5 ribosomal proteins"	Verified	chr10:651895-652572	651895-652572	98.7%	15925.32	13495.15	14930.54	13129.20	2757.28	2498.88	14710.23	14029.87	2628.08	54.30	56.95	10.89	-2.42	-3.86	Matched[3318]
YJR124C		Putative protein of unknown function; expression induced under calcium shortage	Uncharacterized	chr10:652886-654232	652886-654232	99.0%	142.44	126.69	95.96	76.47	37.48	20.99	134.57	86.21	29.24	0.50	0.35	0.12	-1.56	-1.22	Matched[3319]
YJR125C	ENT3	Protein containing an N-terminal epsin-like domain involved in clathrin recruitment and traffic between the Golgi and endosomes; associates with the clathrin adaptor Gga2p	Verified	chr10:654731-655957	654731-655957	99.1%	309.15	361.77	350.26	362.59	684.89	624.05	335.46	356.42	654.47	1.24	1.45	2.71	0.88	1.21	Frag>80[3320,3321]
YJR126C	VPS70	Protein of unknown function involved in vacuolar protein sorting	Verified	chr10:656248-658683	656248-658683	99.1%	194.27	231.55	214.57	218.30	198.42	150.37	212.91	216.43	174.39	0.79	0.88	0.72	-0.31	-0.12	Matched[3322]
YJR128W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF RSF2"	Dubious	chr10:662915-663274	662915-663274	98.8%	16.88	14.06	22.50	5.63	11.25	16.88	15.47	14.06	14.06	0.06	0.06	0.06	0.00	1.56	Covered/w/another[3324]
YJR127C	RSF2	"Zinc-finger protein involved in transcriptional control of both nuclear and mitochondrial genes, many of which specify products required for glycerol-based growth, respiration, and other functions"	Verified	chr10:658911-663053	658911-663053	98.7%	169.42	199.74	138.37	131.04	205.60	267.95	184.58	134.71	236.78	0.68	0.55	0.98	0.81	1.30	Frag>80[3323]
YJR129C		Putative protein of unknown function; predicted S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr10:663994-665013	663994-665013	99.1%	73.20	59.35	43.52	36.60	17.81	30.67	66.28	40.06	24.24	0.24	0.16	0.10	-0.73	-0.91	Covered/w/another[3324]
YJR130C	STR2	"Cystathionine gamma-synthase, converts cysteine into cystathionine"	Verified	chr10:665212-667131	665212-667131	99.2%	90.34	156.52	100.85	91.39	101.37	70.91	123.43	96.12	86.14	0.46	0.39	0.36	-0.16	-0.05	Matched[3325]
YJR131W	MNS1	"Alpha-1,2-mannosidase involved in ER quality control; catalyzes the removal of one mannose residue from Man9GlcNAc to produce a single isomer of Man8GlcNAc in N-linked oligosaccharide biosynthesis; integral to ER membrane"	Verified	chr10:667638-669287	667638-669287	98.7%	90.28	89.66	91.50	90.28	111.77	104.40	89.97	90.89	108.09	0.33	0.37	0.45	0.25	0.67	Matched[3326]
YJR132W	NMD5	"Karyopherin, a carrier protein involved in nuclear import of proteins; importin beta homolog"	Verified	chr10:669516-672662	669516-672662	98.9%	135.85	119.15	86.39	80.61	34.36	23.44	127.50	83.50	28.90	0.47	0.34	0.12	-1.53	-1.16	Matched[3327]
YJR133W	XPT1	"Xanthine-guanine phosphoribosyl transferase, required for xanthine utilization and for optimal utilization of guanine"	Verified	chr10:672985-673614	672985-673614	98.5%	232.06	174.04	243.34	228.83	323.91	215.94	203.05	236.08	269.93	0.75	0.96	1.12	0.19	0.32	Covered/w/another[3328]
YJR134C	SGM1	"Protein of unknown function, required for wild-type growth rate on galactose and mannose; localizes to COPI coated vesicles and the Golgi apparatus"	Verified	chr10:673723-675846	673723-675846	99.5%	248.51	248.04	245.20	228.63	199.76	177.51	248.27	236.91	188.63	0.92	0.96	0.78	-0.33	0.03	Covered/w/another[3328]
YJR135C	MCM22	Protein involved in minichromosome maintenance; component of the kinetochore; binds to centromeric DNA in a Ctf19p-dependent manner	Verified	chr10:676053-676772	676053-676772	99.4%	60.10	53.11	19.57	48.92	50.32	34.94	56.61	34.24	42.63	0.21	0.14	0.18	0.32	-0.28	Covered/w/another[3328]
YJR135W-A	TIM8	Mitochondrial intermembrane space protein mediating import and insertion of polytopic inner membrane proteins; homolog of human DDP1 (deafness dystonia peptide 1) which is mutated in the X-linked Mohr-Tranebjaerg syndrome	Verified	chr10:676965-677228	676965-677228	99.0%	673.58	566.42	631.48	639.13	715.68	329.13	620.00	635.31	522.40	2.29	2.58	2.16	-0.28	-0.88	Matched[3329]
YJR136C		Putative protein of unknown function; may interact with mitochondrial ribosomal protein Rsm23p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr10:677435-678700	677435-678700	99.1%	58.96	71.71	56.57	61.35	49.40	31.87	65.34	58.96	40.64	0.24	0.24	0.17	-0.54	-0.33	Matched[3330]
YJR137C	ECM17	"Sulfite reductase beta subunit, involved in amino acid biosynthesis, transcription repressed by methionine"	Verified	chr10:678951-683279	678951-683279	99.0%	70.22	89.81	70.92	59.95	64.85	77.45	80.01	65.43	71.15	0.30	0.27	0.29	0.12	0.98	Matched[3331]
YJR138W	IML1	"Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the vacuolar membrane"	Verified	chr10:684561-689315	684561-689315	98.9%	72.54	77.86	57.22	60.20	51.69	62.12	75.20	58.71	56.91	0.28	0.24	0.24	-0.05	0.17	Matched[3332]
YJR139C	HOM6	"Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase), dimeric enzyme that catalyzes the third step in the common pathway for methionine and threonine biosynthesis; enzyme has nucleotide-binding, dimerization and catalytic regions"	Verified	chr10:689439-690518	689439-690518	98.8%	1912.84	1644.80	1805.06	1757.26	1788.19	1318.65	1778.82	1781.16	1553.42	6.57	7.23	6.44	-0.20	-0.05	Frag>80[3333,3334]
YJR140W-A		"Dubious open reading frame; completely overlaps the verified gene HIR3; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr10:690955-691104	690955-691104	98.9%	134.79	114.57	155.01	101.10	114.57	53.92	124.68	128.05	84.25	0.46	0.52	0.35	-0.60	NaN	Covered/w/another[3335]
YJR140C	HIR3	"Transcriptional corepressor involved in the cell cycle-regulated transcription of histone genes HTA1, HTB1, HHT1, and HHT2; involved in position-dependent gene silencing and nucleosome reassembly"	Verified	chr10:690744-695690	690744-695690	99.2%	57.47	51.15	40.35	36.48	28.94	28.73	54.31	38.41	28.84	0.20	0.16	0.12	-0.41	-0.26	Frag>80[3335]
YJR141W		Putative protein of unknown function; may be involved in mRNA processing; YJR141W is an essential gene	Uncharacterized	chr10:695900-696943	695900-696943	98.8%	112.41	104.66	93.03	65.89	83.34	44.58	108.53	79.46	63.96	0.40	0.32	0.26	-0.31	-1.21	Matched[3336]
YJR142W		Putative protein of unknown function; GST fusion protein is a Dbf2-Mob1 phosphoylation target in a proteome chip analysis; synthetic lethal with PH085 deletion	Uncharacterized	chr10:697135-698163	697135-698163	98.7%	191.93	257.87	218.50	199.80	300.20	189.96	224.90	209.15	245.08	0.83	0.85	1.02	0.23	-0.09	Matched[3337]
YJR143C	PMT4	"Protein O-mannosyltransferase, transfers mannose residues from dolichyl phosphate-D-mannose to protein serine/threonine residues; appears to form homodimers in vivo and does not complex with other Pmt proteins; target for new antifungals"	Verified	chr10:698320-700608	698320-700608	98.8%	679.16	576.58	650.86	625.66	189.24	167.14	627.87	638.26	178.19	2.32	2.59	0.74	-1.84	-1.00	Matched[3338]
YJR144W	MGM101	"Protein involved in mitochondrial genome maintenance; component of the mitochondrial nucleoid, required for the repair of oxidative mtDNA damage"	Verified	chr10:700876-701685	700876-701685	98.3%	400.54	322.70	400.54	380.45	179.55	141.89	361.62	390.50	160.72	1.33	1.59	0.67	-1.28	-1.11	Matched[3339]
YJR145C	RPS4A	Protein component of the small (40S) ribosomal subunit; mutation affects 20S pre-rRNA processing; identical to Rps4Bp and has similarity to rat S4 ribosomal protein	Verified	chr10:702021-703062	702021-702792,703049-703062	24.6%	6947.23	5644.63	5877.23	5101.87	1405.99	1499.03	6295.93	5489.55	1452.51	23.24	22.28	6.02	-1.92	-2.53	Frag>80[3340,3341]
YJR146W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene HMS2"	Dubious	chr10:703879-704232	703879-704232	98.6%	71.62	68.75	88.80	48.70	123.18	88.80	70.18	68.75	105.99	0.26	0.28	0.44	0.62	-0.15	Covered/w/another[3342]
YJR147W	HMS2	Protein with similarity to heat shock transcription factors; overexpression suppresses the pseudohyphal filamentation defect of a diploid mep1 mep2 homozygous null mutant	Verified	chr10:704190-705266	704190-705266	99.0%	231.68	216.67	172.59	94.74	69.41	52.53	224.18	133.66	60.97	0.83	0.54	0.25	-1.13	-1.26	Covered/w/another[3342]
YJR148W	BAT2	"Cytosolic branched-chain amino acid aminotransferase, homolog of murine ECA39; highly expressed during stationary phase and repressed during logarithmic phase"	Verified	chr10:705738-706868	705738-706868	98.5%	842.56	1083.93	1053.43	1308.26	1143.16	1185.33	963.25	1180.84	1164.24	3.56	4.79	4.82	-0.02	0.24	Matched[3343]
YJR149W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr10:707154-708368	707154-708368	98.8%	67.50	66.67	64.17	55.84	103.34	50.00	67.09	60.00	76.67	0.25	0.24	0.32	0.35	0.93	Matched[3345]
YJR150C	DAN1	"Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth"	Verified	chr10:708805-709701	708805-709701	97.1%	0.00	87.29	0.00	1.15	13.78	9.19	43.65	0.57	11.49	0.16	0.00	0.05	4.32	0.50	
YJR151C	DAN4	"Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth"	Verified	chr10:712249-715734	712249-715734	66.3%	39.35	58.37	38.48	27.24	16.86	30.70	48.86	32.86	23.78	0.18	0.13	0.10	-0.47	0.70	Frag<80[3346,3347,3348]
YJR151W-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr10:717574-717624	717574-717624	98.6%	19.88	0.00	0.00	0.00	19.88	0.00	9.94	0.00	9.94	0.04	0.00	0.04	Inf	NaN	
YJR152W	DAL5	Allantoin permease; ureidosuccinate permease; expression is constitutive but sensitive to nitrogen catabolite repression	Verified	chr10:719660-721291	719660-721291	98.9%	50.21	78.10	48.35	41.53	51.45	29.13	64.15	44.94	40.29	0.24	0.18	0.17	-0.16	0.71	Covered[3349]
YJR153W	PGU1	"Endo-polygalacturonase, pectolytic enzyme that hydrolyzes the alpha-1,4-glycosidic bonds in the rhamnogalacturonan chains in pectins"	Verified	chr10:722809-723894	722809-723894	98.7%	45.71	42.91	42.91	31.72	50.37	26.12	44.31	37.31	38.25	0.16	0.15	0.16	0.04	-0.25	
YJR154W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr10:725778-726818	725778-726818	98.5%	24.39	38.05	11.71	12.68	7.80	12.68	31.22	12.19	10.24	0.12	0.05	0.04	-0.25	-0.24	Overlap[3350]
YJR155W	AAD10	Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role	Verified	chr10:727399-728265	727399-728265	77.8%	74.14	131.97	54.86	37.07	93.41	47.45	103.05	45.97	70.43	0.38	0.19	0.29	0.62	0.88	Covered[3350]
YJR156C	THI11	"Protein involved in synthesis of the thiamine precursor hydroxymethylpyrimidine (HMP); member of a subtelomeric gene family including THI5, THI11, THI12, and THI13"	Verified	chr10:728568-729590	728568-729590	1.6%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.71	
YJR157W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr10:730509-730871	730509-730871	2.5%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.29	
YJR158W	HXT16	"Protein of unknown function with similarity to hexose transporter family members, expression is repressed by high levels of glucose"	Verified	chr10:732434-734137	732434-734137	0.6%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.67	
YJR159W	SOR1	Sorbitol dehydrogenase; expression is induced in the presence of sorbitol	Verified	chr10:736038-737111	736038-737111	0.6%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.44	
YJR160C	MPH3	"Alpha-glucoside permease, transports maltose, maltotriose, alpha-methylglucoside, and turanose; identical to Mph2p; encoded in a subtelomeric position in a region likely to have undergone duplication"	Verified	chr10:738002-739810	738002-739810	1.1%	48.39	48.39	48.39	0.00	96.77	48.39	48.39	24.19	72.58	0.18	0.10	0.30	1.58	0.64	
YJR161C	COS5	"Protein of unknown function, member the DUP380 subfamily of conserved, often subtelomerically-encoded proteins"	Verified	chr10:742842-743993	742842-743993	3.2%	27.21	0.00	27.21	81.63	0.00	0.00	13.61	54.42	0.00	0.05	0.22	0.00	-Inf	0.39	
YJR162C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr10:744905-745255	744905-745255	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.68	
YKL225W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr11:452-799	452-799	27.2%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	-0.35	
YKL224C		Putative protein of unknown function	Uncharacterized	chr11:1811-2182	1811-2182	2.1%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.91	
YKL223W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr11:2390-2722	2390-2722	4.5%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.07	
YKL222C		"Protein of unknown function that may interact with ribosomes, based on co-purification experiments; similar to transcriptional regulators from the zinc cluster (binuclear cluster) family; null mutant is sensitive to caffeine"	Verified	chr11:3504-5621	3504-5621	99.1%	44.30	57.64	40.49	42.39	45.25	40.01	50.97	41.44	42.63	0.19	0.17	0.18	0.04	0.38	Covered/w/another[3351]
YKL221W	MCH2	"Protein with similarity to mammalian monocarboxylate permeases, which are involved in transport of monocarboxylic acids across the plasma membrane; mutant is not deficient in monocarboxylate transport"	Verified	chr11:6108-7529	6108-7529	99.1%	11.36	6.39	7.10	4.97	39.04	25.56	8.87	6.03	32.30	0.03	0.02	0.13	2.42	2.95	Covered/w/another[3351]
YKL220C	FRE2	"Ferric reductase and cupric reductase, reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low iron levels but not by low copper levels"	Verified	chr11:9092-11227	9092-11227	96.3%	25.28	29.66	29.66	13.13	25.28	12.15	27.47	21.39	18.72	0.10	0.09	0.08	-0.19	0.63	
YKL219W	COS9	"Protein of unknown function, member of the DUP380 subfamily of conserved, often subtelomerically-encoded proteins"	Verified	chr11:14485-15708	14485-15708	89.9%	152.74	217.30	169.11	146.38	196.39	149.11	185.02	157.75	172.75	0.68	0.64	0.72	0.13	0.12	Matched[3353]
YKL218C	SRY1	"3-hydroxyaspartate dehydratase, deaminates L-threo-3-hydroxyaspartate to form oxaloacetate and ammonia; required for survival in the presence of hydroxyaspartate"	Verified	chr11:17359-18339	17359-18339	99.0%	91.61	133.81	106.02	83.37	219.24	158.51	112.71	94.69	188.88	0.42	0.38	0.78	1.00	0.80	Matched[3355]
YKL217W	JEN1	"Lactate transporter, required for uptake of lactate and pyruvate; phosphorylated; expression is derepressed by transcriptional activator Cat8p during respiratory growth, and repressed in the presence of glucose, fructose, and mannose"	Verified	chr11:22234-24084	22234-24084	98.7%	23.54	34.48	29.56	29.56	65.14	61.85	29.01	29.56	63.49	0.11	0.12	0.26	1.10	0.32	Covered[3356]
YKL216W	URA1	"Dihydroorotate dehydrogenase, catalyzes the fourth enzymatic step in the de novo biosynthesis of pyrimidines, converting dihydroorotic acid into orotic acid"	Verified	chr11:25216-26160	25216-26160	98.8%	3562.62	2521.47	3043.11	3121.31	625.55	516.29	3042.04	3082.21	570.92	11.23	12.51	2.37	-2.43	-2.11	Frag>80[3357,3358]
YKL215C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr11:26828-30688	26828-30688	99.1%	64.84	67.45	57.52	55.16	69.54	77.12	66.14	56.34	73.33	0.24	0.23	0.30	0.38	0.91	Frag>80[3359,3360,3361]
YKL214C	YRA2	"Member of the REF (RNA and export factor binding proteins) family; when overexpressed, can substitute for the function of Yra1p in export of poly(A)+ mRNA from the nucleus"	Verified	chr11:31083-31694	31083-31694	99.1%	234.11	227.52	222.57	214.33	179.71	95.62	230.82	218.45	137.67	0.85	0.89	0.57	-0.67	-0.71	Matched[3362]
YKL213C	DOA1	"WD repeat protein required for ubiquitin-mediated protein degradation, forms complex with Cdc48p, plays a role in controlling cellular ubiquitin concentration; also promotes efficient NHEJ in postdiauxic/stationary phase"	Verified	chr11:31961-34108	31961-34108	99.2%	174.62	186.82	180.72	185.88	305.11	240.33	180.72	183.30	272.72	0.67	0.74	1.13	0.57	1.15	Matched[3363]
YKL212W	SAC1	"Lipid phosphoinositide phosphatase of the ER and Golgi, involved in protein trafficking and secretion"	Verified	chr11:34544-36415	34544-36415	98.7%	694.37	674.35	616.44	557.99	334.47	405.37	684.36	587.21	369.92	2.53	2.38	1.53	-0.67	-0.16	Matched[3364]
YKL211C	TRP3	"Bifunctional enzyme exhibiting both indole-3-glycerol-phosphate synthase and anthranilate synthase activities, forms multifunctional hetero-oligomeric anthranilate synthase:indole-3-glycerol phosphate synthase enzyme complex with Trp2p"	Verified	chr11:36700-38154	36700-38154	98.9%	300.24	423.26	298.16	301.63	217.54	137.61	361.75	299.90	177.57	1.34	1.22	0.74	-0.76	-0.53	Matched[3365]
YKL210W	UBA1	"Ubiquitin activating enzyme (E1), involved in ubiquitin-mediated protein degradation and essential for viability"	Verified	chr11:39164-42238	39164-42238	98.8%	700.62	574.20	615.02	627.86	606.79	665.72	637.41	621.44	636.26	2.35	2.52	2.64	0.03	0.29	Matched[3367]
YKL209C	STE6	"Plasma membrane ATP-binding cassette (ABC) transporter required for the export of a-factor, catalyzes ATP hydrolysis coupled to a-factor transport; contains 12 transmembrane domains and two ATP binding domains; expressed only in MATa cells"	Verified	chr11:42424-46296	42424-46296	99.2%	437.95	519.45	424.94	368.95	179.66	146.07	478.70	396.94	162.87	1.77	1.61	0.67	-1.29	-0.82	Frag>80[3368,3369]
YKL208W	CBT1	"Protein involved in 5' end processing of mitochondrial COB, 15S_rRNA, and RPM1 transcripts; may also have a role in 3' end processing of the COB pre-mRNA; displays genetic interaction with cell cycle-regulated kinase Dbf2p"	Verified	chr11:47158-47973	47158-47973	98.6%	72.06	80.76	60.88	63.37	104.37	47.21	76.41	62.12	75.79	0.28	0.25	0.31	0.29	0.27	Matched[3370]
YKL207W		Putative protein of unknown function; non-essential gene	Uncharacterized	chr11:48195-48956	48195-48956	98.6%	798.71	847.97	772.09	712.19	593.71	441.95	823.34	742.14	517.83	3.04	3.01	2.15	-0.52	-0.53	Matched[3371]
YKL206C	ADD66	Protein involved in 20S proteasome assembly; forms a heterodimer with Pba1p that binds to proteasome precursors; similar to human PAC2 constituent of the PAC1-PAC2 complex involved in proteasome assembly	Verified	chr11:49007-49810	49007-49810	99.1%	165.75	169.52	154.45	144.40	251.14	165.75	167.63	149.43	208.44	0.62	0.61	0.86	0.48	0.17	Matched[3372]
YKL205W	LOS1	Nuclear pore protein involved in nuclear export of pre-tRNA	Verified	chr11:50052-53354	50052-53354	99.2%	144.07	109.88	99.20	86.99	43.34	41.82	126.98	93.10	42.58	0.47	0.38	0.18	-1.13	-0.59	Matched[3373]
YKL204W	EAP1	"eIF4E-associated protein, binds eIF4E and inhibits cap-dependent translation, also functions independently of eIF4E to maintain genetic stability; plays a role in cell growth, implicated in the TOR signaling cascade"	Verified	chr11:53705-55603	53705-55603	98.7%	210.30	203.89	201.22	214.03	210.83	258.33	207.09	207.63	234.58	0.76	0.84	0.97	0.18	0.81	Matched[3374]
YKL203C	TOR2	"PIK-related protein kinase and rapamycin target; subunit of TORC1, a complex that regulates growth in response to nutrients and TORC2, a complex that regulates cell-cycle dependent polarization of the actin cytoskeleton; involved in meiosis"	Verified	chr11:55936-63360	55936-63360	99.1%	51.77	49.33	49.19	44.57	30.17	39.68	50.55	46.88	34.92	0.19	0.19	0.14	-0.42	-0.09	Frag<80[3375]
YKL202W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr11:63822-64403	63822-64403	77.6%	150.55	201.48	201.48	183.76	469.37	325.46	176.01	192.62	397.42	0.65	0.78	1.65	1.04	0.56	Covered/w/another[3376]
YKL201C	MNN4	"Putative positive regulator of mannosylphosphate transferase (Mnn6p), involved in mannosylphosphorylation of N-linked oligosaccharides; expression increases in late-logarithmic and stationary growth phases"	Verified	chr11:63931-67467	63931-67467	95.4%	88.30	125.94	112.01	93.34	164.46	155.57	107.12	102.67	160.01	0.40	0.42	0.66	0.64	1.05	Covered/w/another[3376]
YKL198C	PTK1	Putative serine/threonine protein kinase that regulates spermine uptake; involved in polyamine transport; possible mitochondrial protein	Verified	chr11:68274-70223	68274-70223	98.0%	121.95	171.14	127.70	72.75	75.89	64.38	146.55	100.23	70.13	0.54	0.41	0.29	-0.52	0.59	Covered/w/another[3376]
YKL197C	PEX1	AAA-peroxin that heterodimerizes with AAA-peroxin Pex6p and participates in the recycling of peroxisomal signal receptor Pex5p from the peroxisomal membrane to the cystosol; induced by oleic acid and upregulated during anaerobiosis	Verified	chr11:70739-73870	70739-73870	99.2%	49.23	56.95	45.36	39.25	40.86	52.44	53.09	42.31	46.65	0.20	0.17	0.19	0.14	0.66	Covered/w/another[3376]
YKL196C	YKT6	"Vesicle membrane protein (v-SNARE) with acyltransferase activity; involved in trafficking to and within the Golgi, endocytic trafficking to the vacuole, and vacuolar fusion; membrane localization due to prenylation at the carboxy-terminus"	Verified	chr11:74937-75539	74937-75539	99.4%	781.14	650.95	749.43	677.65	1043.19	619.24	716.04	713.54	831.21	2.64	2.90	3.44	0.22	-0.35	Frag>80[3378,3379]
YKL195W	MIA40	Essential protein of the mitochondrial intermembrane space (IMS); promotes retention of newly imported proteins; may do so by stabilizing client protein folding as part of a disulfide relay system or transferring metal to client proteins	Verified	chr11:75826-77037	75826-77037	98.2%	599.79	597.27	724.12	740.92	1433.11	851.80	598.53	732.52	1142.46	2.21	2.97	4.73	0.64	0.65	Matched[3380]
YKL194C	MST1	Mitochondrial threonyl-tRNA synthetase	Verified	chr11:77263-78651	77263-78651	99.0%	111.98	117.80	125.07	121.44	157.07	117.80	114.89	123.25	137.43	0.42	0.50	0.57	0.16	0.31	Matched[3381]
YKL193C	SDS22	"Conserved nuclear regulatory subunit of Glc7p type 1 protein serine-threonine phosphatase (PP1), functions positively with Glc7p to promote dephosphorylation of nuclear substrates required for chromosome transmission during mitosis"	Verified	chr11:78871-79887	78871-79887	99.1%	235.20	281.84	308.63	291.76	659.94	558.72	258.52	300.20	609.33	0.95	1.22	2.52	1.02	1.29	Frag>80[3382,3383,3384]
YKL192C	ACP1	"Mitochondrial matrix acyl carrier protein, involved in biosynthesis of octanoate, which is a precursor to lipoic acid; activated by phosphopantetheinylation catalyzed by Ppt2p"	Verified	chr11:80165-80542	80165-80542	98.6%	1159.21	952.59	1178.00	1078.71	1867.62	1279.96	1055.90	1128.35	1573.79	3.90	4.58	6.52	0.48	0.51	Frag>80[3384,3385]
YKL191W	DPH2	"Protein required, along with Dph1p, Kti11p, Jjj3p, and Dph5p, for synthesis of diphthamide, which is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); may act in a complex with Dph1p and Kti11p"	Verified	chr11:81040-82644	81040-82644	98.5%	169.50	104.99	131.56	84.75	34.79	16.44	137.25	108.15	25.62	0.51	0.44	0.11	-2.08	-1.15	Matched[3386]
YKL190W	CNB1	"Calcineurin B; the regulatory subunit of calcineurin, a Ca++/calmodulin-regulated type 2B protein phosphatase which regulates Crz1p (a stress-response transcription factor), the other calcineurin subunit is encoded by CNA1 and/or CMP1"	Verified	chr11:82952-83555	82952-83003,83080-83555	98.4%	573.54	585.08	550.44	517.72	658.22	448.44	579.31	534.08	553.33	2.14	2.17	2.29	0.05	0.23	Matched[3387]
YKL189W	HYM1	"Component of the RAM signaling network that is involved in regulation of Ace2p activity and cellular morphogenesis, interacts with Kic1p and Sog2p, localizes to sites of polarized growth during budding and during the mating response"	Verified	chr11:84709-85908	84709-85908	99.1%	102.60	130.36	117.74	116.06	173.25	118.58	116.48	116.90	145.92	0.43	0.47	0.60	0.32	0.67	Matched[3388]
YKL188C	PXA2	"Subunit of a heterodimeric peroxisomal ATP-binding cassette transporter complex (Pxa1p-Pxa2p), required for import of long-chain fatty acids into peroxisomes; similarity to human adrenoleukodystrophy transporter and ALD-related proteins"	Verified	chr11:86230-88791	86230-88791	99.2%	22.03	40.92	29.11	33.05	60.59	43.28	31.47	31.08	51.93	0.12	0.13	0.22	0.74	1.28	Frag>80[3389]
YKL187C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in a phosphorylated state in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr11:89289-91541	89289-91541	98.6%	36.90	43.65	33.30	34.20	94.51	78.75	40.28	33.75	86.63	0.15	0.14	0.36	1.36	1.66	Covered[3390]
YKL186C	MTR2	"mRNA transport regulator, essential nuclear protein; Mex67p and Mtr2p form a mRNA export complex which binds to RNA"	Verified	chr11:92749-93471	92749-93316,93470-93471	99.0%	347.34	398.73	375.69	336.71	382.78	219.74	373.03	356.20	301.26	1.38	1.45	1.25	-0.24	-0.34	Frag>80[3391,3392]
YKL185W	ASH1	"Zinc-finger inhibitor of HO transcription; mRNA is localized and translated in the distal tip of anaphase cells, resulting in accumulation of Ash1p in daughter cell nuclei and inhibition of HO expression; potential Cdc28p substrate"	Verified	chr11:94504-96270	94504-96270	99.0%	317.96	399.74	353.42	260.78	284.80	228.75	358.85	307.10	256.77	1.32	1.25	1.06	-0.26	0.36	Matched[3393]
YKL184W	SPE1	"Ornithine decarboxylase, catalyzes the first step in polyamine biosynthesis; degraded in a proteasome-dependent manner in the presence of excess polyamines"	Verified	chr11:96762-98162	96762-98162	98.9%	350.79	321.92	347.18	311.81	202.82	144.36	336.35	329.49	173.59	1.24	1.34	0.72	-0.92	-0.60	Matched[3394]
YKL183C-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr11:98400-98612	98400-98612	99.2%	70.99	52.06	37.86	47.33	37.86	42.60	61.53	42.60	40.23	0.23	0.17	0.17	-0.08	NaN	Matched[3395]
YKL183W	LOT5	Protein of unknown function; gene expression increases in cultures shifted to a lower temperature	Verified	chr11:98726-99646	98726-99646	98.3%	189.96	189.96	196.59	168.98	94.98	98.29	189.96	182.78	96.64	0.70	0.74	0.40	-0.92	-0.31	Frag>80[3395,3396]
YKL182W	FAS1	"Beta subunit of fatty acid synthetase, which catalyzes the synthesis of long-chain saturated fatty acids; contains acetyltransacylase, dehydratase, enoyl reductase, malonyl transacylase, and palmitoyl transacylase activities"	Verified	chr11:100676-106831	100676-106831	98.9%	826.07	1307.82	731.82	690.61	141.54	138.42	1066.94	711.21	139.98	3.94	2.89	0.58	-2.35	-1.81	Frag>80[3397,3398,3399]
YKL181W	PRS1	"5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of five related enzymes, which are active as heteromultimeric complexes"	Verified	chr11:107321-108604	107321-108604	98.7%	913.76	637.58	798.55	677.03	214.63	114.42	775.67	737.79	164.52	2.86	2.99	0.68	-2.16	-1.85	Matched[3400]
YKL180W	RPL17A	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Bp and has similarity to E. coli L22 and rat L17 ribosomal proteins; copurifies with the Dam1 complex (aka DASH complex)"	Verified	chr11:109274-110134	109274-109582,109889-110134	65.2%	6094.71	5223.64	5301.07	4349.81	1172.49	702.39	5659.18	4825.44	937.44	20.89	19.59	3.88	-2.36	-2.38	Frag>80[3401,3402]
YKL179C	COY1	Golgi membrane protein with similarity to mammalian CASP; genetic interactions with GOS1 (encoding a Golgi snare protein) suggest a role in Golgi function	Verified	chr11:110469-112508	110469-112508	99.5%	199.09	203.53	203.53	188.25	262.66	193.67	201.31	195.89	228.17	0.74	0.80	0.95	0.22	0.42	Matched[3403]
YKL177W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene STE3"	Dubious	chr11:114361-114699	114361-114699	99.4%	0.00	0.00	0.00	2.97	11.87	5.94	0.00	1.48	8.90	0.00	0.01	0.04	2.58	0.34	
YKL178C	STE3	"Receptor for a factor receptor, transcribed in alpha cells and required for mating by alpha cells, couples to MAP kinase cascade to mediate pheromone response; ligand bound receptors are endocytosed and recycled to the plasma membrane; GPCR"	Verified	chr11:113220-114632	113220-114632	99.0%	7.86	2.14	3.57	5.72	16.44	8.58	5.00	4.64	12.51	0.02	0.02	0.05	1.43	1.21	Frag<80[3404,3405]
YKL176C	LST4	Protein possibly involved in a post-Golgi secretory pathway; required for the transport of nitrogen-regulated amino acid permease Gap1p from the Golgi to the cell surface	Verified	chr11:115505-117991	115505-117991	99.0%	238.79	206.30	190.47	154.73	86.50	56.86	222.55	172.60	71.68	0.82	0.70	0.30	-1.27	-0.89	Matched[3406]
YKL175W	ZRT3	"Vacuolar membrane zinc transporter, transports zinc from storage in the vacuole to the cytoplasm when needed; transcription is induced under conditions of zinc deficiency"	Verified	chr11:118798-120309	118798-120309	99.0%	316.10	263.30	289.37	280.68	177.09	141.68	289.70	285.02	159.39	1.07	1.16	0.66	-0.84	-0.34	Matched[3407]
YKL174C	TPO5	Protein involved in excretion of putrescine and spermidine; putative polyamine transporter in the Golgi or post-Golgi vesicles	Verified	chr11:120385-122241	120385-122241	99.0%	138.23	130.61	120.81	102.31	97.96	82.18	134.42	111.56	90.07	0.50	0.45	0.37	-0.31	-0.08	Matched[3408]
YKL173W	SNU114	GTPase component of U5 snRNP involved in mRNA splicing via spliceosome; binds directly to U5 snRNA; proposed to be involved in conformational changes of the spliceosome; similarity to ribosomal translocation factor EF-2	Verified	chr11:122522-125548	122522-125548	98.8%	87.65	84.30	72.60	63.90	35.80	43.82	85.98	68.25	39.81	0.32	0.28	0.16	-0.78	-0.29	Matched[3409]
YKL172W	EBP2	"Essential protein required for the maturation of 25S rRNA and 60S ribosomal subunit assembly, localizes to the nucleolus; constituent of 66S pre-ribosomal particles"	Verified	chr11:125764-127047	125764-127047	97.3%	742.07	417.06	518.73	415.46	58.44	34.42	579.57	467.10	46.43	2.14	1.90	0.19	-3.33	-3.39	Frag>80[3410,3411]
YKL171W		Putative protein of unknown function; predicted protein kinase; implicated in proteasome function; epitope-tagged protein localizes to the cytoplasm	Uncharacterized	chr11:127480-130266	127480-130266	98.8%	68.28	58.11	65.37	59.56	111.86	108.95	63.19	62.47	110.41	0.23	0.25	0.46	0.82	1.62	Matched[3412]
YKL170W	MRPL38	Mitochondrial ribosomal protein of the large subunit; appears as two protein spots (YmL34 and YmL38) on two-dimensional SDS gels	Verified	chr11:130639-131055	130639-131055	98.5%	394.52	284.93	438.36	387.21	426.18	250.84	339.73	412.79	338.51	1.25	1.68	1.40	-0.29	-0.37	Covered/w/another[3413]
YKL169C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene MRPL38"	Dubious	chr11:130690-131073	130690-131073	98.5%	412.56	293.55	483.97	394.05	439.01	259.17	353.06	439.01	349.09	1.30	1.78	1.45	-0.33	-0.45	Covered/w/another[3413]
YKL168C	KKQ8	Putative serine/threonine protein kinase with unknown cellular role	Verified	chr11:131293-133467	131293-133467	99.0%	73.35	98.42	68.71	77.06	178.27	133.24	85.88	72.88	155.75	0.32	0.30	0.65	1.10	0.94	Covered/w/another[3413]
YKL167C	MRP49	"Mitochondrial ribosomal protein of the large subunit, not essential for mitochondrial translation"	Verified	chr11:133726-134139	133726-134139	99.3%	245.67	282.15	330.80	321.07	569.17	355.12	263.91	325.93	462.15	0.97	1.32	1.91	0.50	0.49	Covered/w/another[3413]
YKL166C	TPK3	cAMP-dependent protein kinase catalytic subunit; promotes vegetative growth in response to nutrients via the Ras-cAMP signaling pathway; inhibited by regulatory subunit Bcy1p in the absence of cAMP; partially redundant with Tpk1p and Tpk2p	Verified	chr11:134514-135710	134514-135710	99.2%	207.18	157.49	157.49	113.70	74.11	53.90	182.33	135.59	64.01	0.67	0.55	0.27	-1.08	-1.38	Covered/w/another[3413]
YKL165C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr11:135795-136028	135795-136028	98.8%	17.31	21.64	34.62	30.29	12.98	8.65	19.47	32.46	10.82	0.07	0.13	0.04	-1.58	-1.25	Covered/w/another[3413]
YKL165C	MCD4	Protein involved in glycosylphosphatidylinositol (GPI) anchor synthesis; multimembrane-spanning protein that localizes to the endoplasmic reticulum; highly conserved among eukaryotes	Verified	chr11:137937-140696	137937-140696	99.0%	185.57	160.31	168.73	133.23	118.22	86.38	172.94	150.98	102.30	0.64	0.61	0.42	-0.56	-0.45	Covered/w/another[3413]
YKL164C	PIR1	"O-glycosylated protein required for cell wall stability; attached to the cell wall via beta-1,3-glucan; mediates mitochondrial translocation of Apn1p; expression regulated by the cell integrity pathway and by Swi5p during the cell cycle"	Verified	chr11:141799-142824	141799-142824	59.6%	1928.89	1701.68	2072.74	1373.11	3027.38	1418.88	1815.28	1722.93	2223.13	6.70	6.99	9.21	0.37	0.37	Frag>80[3414,3415]
YKL163W	PIR3	"O-glycosylated covalently-bound cell wall protein required for cell wall stability; expression is cell cycle regulated, peaking in M/G1 and also subject to regulation by the cell integrity pathway"	Verified	chr11:144406-145383	144406-145383	69.8%	67.34	70.27	70.27	32.21	231.30	165.43	68.81	51.24	198.37	0.25	0.21	0.82	1.95	1.93	Frag<80[3417,3418]
YKL162C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr11:145927-146079	145927-146079	98.4%	6.64	6.64	26.57	0.00	46.50	39.86	6.64	13.29	43.18	0.02	0.05	0.18	1.70	0.73	Matched[3418]
YKL162C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the mitochondrion	Uncharacterized	chr11:147635-148843	147635-148843	99.2%	35.04	23.36	49.22	46.71	82.58	58.39	29.20	47.96	70.49	0.11	0.19	0.29	0.56	1.49	Matched[3419]
YKL161C		Protein kinase implicated in the Slt2p mitogen-activated (MAP) kinase signaling pathway; associates with Rlm1p	Verified	chr11:149391-150692	149391-150692	99.2%	64.28	65.83	50.34	33.30	78.99	42.59	65.05	41.82	60.79	0.24	0.17	0.25	0.54	0.53	Covered[3420]
YKL160W	ELF1	Transcription elongation factor that contains a conserved zinc finger domain; implicated in the maintenance of proper chromatin structure in actively transcribed regions; deletion inhibits Brome mosaic virus (BMV) gene expression	Verified	chr11:153274-153711	153274-153711	98.3%	694.27	436.53	745.36	571.21	866.10	527.09	565.40	658.28	696.59	2.09	2.67	2.89	0.08	-0.01	Matched[3421]
YKL159C	RCN1	Protein involved in calcineurin regulation during calcium signaling; has similarity to H. sapiens DSCR1 which is found in the Down Syndrome candidate region	Verified	chr11:153821-154456	153821-154456	99.2%	109.36	104.60	79.24	90.34	141.06	115.70	106.98	84.79	128.38	0.39	0.34	0.53	0.60	0.50	Matched[3422]
YKL157W	APE2	"Zinc-dependent metallopeptidase yscII, may have a role in obtaining leucine from dipeptide substrates; sequence coordinates have changed since RT-PCR analysis showed that the adjacent ORF YKL158W comprises the 5' exon of APE2/YKL157W"	Verified	chr11:154996-158186	154996-155276,155660-158186	98.4%	423.34	499.32	450.11	476.16	386.79	431.66	461.33	463.14	409.23	1.70	1.88	1.70	-0.18	0.58	Matched[3423]
YKL156W	RPS27A	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps27Bp and has similarity to rat S27 ribosomal protein	Verified	chr11:158619-159217	158619-158621,158972-159217	98.1%	4717.28	4000.68	3951.54	3144.86	880.40	245.69	4358.98	3548.20	563.04	16.09	14.40	2.33	-2.66	-3.81	Matched[3424]
YKL156C-A		"Dubious open reading frame unlikely to encode a protein; completely overlaps the verified gene RPS27A; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr11:158980-159096	158980-159096	98.9%	4433.56	3638.46	3975.51	3310.05	795.10	241.99	4036.01	3642.78	518.55	14.90	14.79	2.15	-2.81	NaN	Matched[3424]
YKL155C	RSM22	Mitochondrial ribosomal protein of the small subunit	Verified	chr11:159461-161347	159461-161347	99.2%	110.57	113.25	118.05	125.53	80.13	56.09	111.91	121.79	68.11	0.41	0.49	0.28	-0.84	-0.31	Matched[3425]
YKL154W	SRP102	Signal recognition particle (SRP) receptor beta subunit; involved in SRP-dependent protein targeting; anchors Srp101p to the ER membrane	Verified	chr11:161606-162340	161606-162340	98.7%	310.20	250.92	256.43	248.16	227.48	125.46	280.56	252.30	176.47	1.04	1.02	0.73	-0.52	-1.03	Frag>80[3426,3427]
YKL153W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; transcription of both YLK153W and the overlapping essential gene GPM1 is reduced in the gcr1 null mutant"	Dubious	chr11:163605-164114	163605-164114	98.7%	46712.90	55976.83	44077.13	43459.41	49007.04	38515.60	51344.87	43768.27	43761.32	189.54	177.66	181.32	-0.00	-0.02	Matched[3429]
YKL152C	GPM1	"Tetrameric phosphoglycerate mutase, mediates the conversion of 3-phosphoglycerate to 2-phosphoglycerate during glycolysis and the reverse reaction during gluconeogenesis"	Verified	chr11:163647-164390	163647-164390	98.8%	42955.67	50870.43	41378.98	40727.36	43717.50	36397.23	46913.05	41053.17	40057.36	173.18	166.64	165.97	-0.04	-1.09	Matched[3429]
YKL151C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr11:164922-165935	164922-165935	99.2%	210.78	417.58	245.58	275.40	3173.62	2455.78	314.18	260.49	2814.70	1.16	1.06	11.66	3.43	3.28	Matched[3431]
YKL150W	MCR1	"Mitochondrial NADH-cytochrome b5 reductase, involved in ergosterol biosynthesis"	Verified	chr11:166404-167457	166404-166405,166493-167457	98.8%	518.19	814.45	735.93	829.10	3283.96	1849.78	666.32	782.52	2566.87	2.46	3.18	10.64	1.71	1.41	Matched[3432]
YKL149C	DBR1	"RNA lariat debranching enzyme, involved in intron turnover; required for efficient Ty1 transposition"	Verified	chr11:167617-168834	167617-168834	99.3%	100.09	80.23	65.35	56.25	71.14	42.19	90.16	60.80	56.66	0.33	0.25	0.23	-0.10	-0.03	Frag>80[3433,3434]
YKL148C	SDH1	"Flavoprotein subunit of succinate dehydrogenase (Sdh1p, Sdh2p, Sdh3p, Sdh4p), which couples the oxidation of succinate to the transfer of electrons to ubiquinone"	Verified	chr11:169212-171134	169212-171134	98.8%	218.47	281.12	361.14	491.70	435.89	553.29	249.80	426.42	494.59	0.92	1.73	2.05	0.21	0.72	Matched[3435]
YKL146W	AVT3	"Vacuolar transporter, exports large neutral amino acids from the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters"	Verified	chr11:171788-173866	171788-173866	98.6%	108.73	111.17	126.77	119.46	135.06	124.82	109.95	123.12	129.94	0.41	0.50	0.54	0.08	0.44	Matched[3436]
YKL147C		"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; partially overlaps the verified gene AVT3"	Dubious	chr11:171556-172173	171556-172173	98.0%	44.60	44.60	66.08	56.17	56.17	62.78	44.60	61.12	59.47	0.16	0.25	0.25	-0.04	0.03	Covered/w/another[3436]
YKL145W	RPT1	One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; required for optimal CDC20 transcription; interacts with Rpn12p and the E3 ubiquitin-protein ligase Ubr1p	Verified	chr11:174218-175621	174218-175621	98.5%	790.94	559.59	761.30	675.26	947.83	725.15	675.26	718.28	836.49	2.49	2.92	3.47	0.22	0.17	Matched[3437]
YKL145W-A		"Dubious open reading frame, unlikely to encode a protein; completely overlaps the verified essential gene RPT1; identified by expression profiling and mass spectrometry"	Dubious	chr11:174963-175055	174963-175055	98.6%	752.39	545.21	774.19	806.91	806.91	577.92	648.80	790.55	692.41	2.40	3.21	2.87	-0.19	NaN	Covered/w/another[3437]
YKL144C	RPC25	RNA polymerase III subunit C25	Verified	chr11:175848-176486	175848-176486	99.3%	189.21	126.14	108.80	88.30	34.69	17.34	157.68	98.55	26.02	0.58	0.40	0.11	-1.92	-1.33	Matched[3438]
YKL143W	LTV1	"Component of the GSE complex, which is required for proper sorting of amino acid permease Gap1p; required for ribosomal small subunit export from nucleus; required for growth at low temperature"	Verified	chr11:176786-178177	176786-178177	98.2%	245.73	105.31	146.27	103.85	14.63	2.93	175.52	125.06	8.78	0.65	0.51	0.04	-3.83	-4.27	Matched[3439]
YKL142W	MRP8	"Putative mitochondrial ribosomal protein, has similarity to E. coli ribosomal protein S2"	Verified	chr11:178520-179179	178520-179179	98.5%	836.39	990.13	960.92	902.50	3434.72	2423.06	913.26	931.71	2928.89	3.37	3.78	12.14	1.65	1.44	Matched[3440]
YKL141W	SDH3	"Cytochrome b subunit of succinate dehydrogenase (Sdh1p, Sdh2p, Sdh3p, Sdh4p), which couples the oxidation of succinate to the transfer of electrons to ubiquinone"	Verified	chr11:179672-180268	179672-180268	98.9%	653.45	809.20	841.36	1080.06	1460.96	1008.96	731.33	960.71	1234.96	2.70	3.90	5.12	0.36	0.29	Matched[3441]
YKL140W	TGL1	"Steryl ester hydrolase, one of three gene products (Yeh1p, Yeh2p, Tgl1p) responsible for steryl ester hydrolase activity and involved in sterol homeostasis; localized to lipid particle membranes"	Verified	chr11:180784-182430	180784-182430	99.1%	185.12	312.01	277.07	266.65	370.24	245.80	248.56	271.86	308.02	0.92	1.10	1.28	0.18	0.63	Matched[3442]
YKL139W	CTK1	"Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I), which phosphorylates the C-terminal repeated domain of the RNA polymerase II large subunit (Rpo21p) to affect both transcription and pre-mRNA 3' end processing"	Verified	chr11:182963-184549	182963-184549	98.2%	98.84	103.98	86.65	66.11	69.32	47.50	101.41	76.38	58.41	0.37	0.31	0.24	-0.39	-0.21	Matched[3443]
YKL138C-A	HSK3	"Essential subunit of the Dam1 complex (aka DASH complex), couples kinetochores to the force produced by MT depolymerization thereby aiding in chromosome segregation; is transferred to the kinetochore prior to mitosis"	Verified	chr11:184808-185017	184808-185017	99.8%	262.43	257.65	248.11	157.46	429.42	209.94	260.04	202.78	319.68	0.96	0.82	1.32	0.66	NaN	Covered/w/another[3444]
YKL138C	MRPL31	Mitochondrial ribosomal protein of the large subunit	Verified	chr11:185291-185686	185291-185686	99.3%	544.47	501.22	623.34	531.75	651.33	491.04	522.85	577.55	571.19	1.93	2.34	2.37	-0.02	0.01	Covered/w/another[3444]
YKL137W		Putative protein of unknown function; mutation results in growth defect on a non-fermentable (respiratory) carbon source	Uncharacterized	chr11:185962-186297	185962-186297	98.6%	467.75	419.46	407.39	392.30	941.53	510.00	443.61	399.85	725.76	1.64	1.62	3.01	0.86	0.00	Covered/w/another[3444]
YKL136W		Hypothetical protein	Dubious	chr11:186421-186819	186421-186819	99.6%	203.90	309.63	236.63	208.94	357.46	153.56	256.77	222.78	255.51	0.95	0.90	1.06	0.20	0.35	
YKL135C	APL2	"Beta-adaptin, large subunit of the clathrin-associated protein (AP-1) complex; binds clathrin; involved in clathrin-dependent Golgi protein sorting"	Verified	chr11:186465-188645	186465-188645	99.3%	164.92	187.55	156.60	156.14	159.37	128.88	176.23	156.37	144.13	0.65	0.63	0.60	-0.12	0.03	Frag>80[3445]
YKL134C	Oct-01	"Mitochondrial intermediate peptidase, cleaves N-terminal residues of a subset of proteins upon import, after their cleavage by mitochondrial processing peptidase (Mas1p-Mas2p); may contribute to mitochondrial iron homeostasis"	Verified	chr11:189129-191441	189129-191441	99.3%	55.31	44.86	50.95	42.68	51.82	33.97	50.08	46.82	42.90	0.18	0.19	0.18	-0.13	0.27	Matched[3446]
YKL133C		Putative protein of unknown function	Uncharacterized	chr11:191678-193069	191678-193069	99.3%	54.99	52.82	56.44	57.89	222.87	113.61	53.91	57.17	168.24	0.20	0.23	0.70	1.56	0.78	Matched[3447]
YKL131W		"Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr11:194477-194998	194477-194998	99.1%	29.01	42.54	25.14	23.21	21.27	19.34	35.77	24.17	20.30	0.13	0.10	0.08	-0.25	0.04	Covered/w/another[3448]
YKL132C	RMA1	"Putative dihydrofolate synthetase; has similarity to Fol3p and to E. coli folylpolyglutamate synthetase/dihydrofolate synthetase; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr11:193573-194865	193573-194865	99.1%	38.23	53.83	39.79	29.64	34.32	18.72	46.03	34.71	26.52	0.17	0.14	0.11	-0.39	0.03	Matched[3448]
YKL130C	SHE2	RNA-binding protein that binds specific mRNAs and interacts with She3p; part of the mRNA localization machinery that restricts accumulation of certain proteins to the bud	Verified	chr11:195287-196027	195287-196027	99.2%	200.02	208.19	182.33	151.04	214.99	126.54	204.10	166.69	170.77	0.75	0.68	0.71	0.03	0.11	Frag>80[3449,3450,3451]
YKL129C	MYO3	"One of two type I myosins; localizes to actin cortical patches; deletion of MYO3 has little effect on growth, but myo3 myo5 double deletion causes severe defects in growth and actin cytoskeleton organization"	Verified	chr11:196348-200163	196348-200163	98.7%	91.58	148.65	115.47	109.89	165.90	203.59	120.11	112.68	184.75	0.44	0.46	0.77	0.71	1.19	Frag>80[3451,3452]
YKL128C	PMU1	"Putative phosphomutase, contains a region homologous to the active site of phosphomutases; overexpression suppresses the histidine auxotrophy of an ade3 ade16 ade17 triple mutant and the temperature sensitivity of a tps2 mutant"	Verified	chr11:200528-201415	200528-201415	98.9%	356.31	339.23	305.08	309.63	367.69	233.36	347.77	307.36	300.53	1.28	1.25	1.25	-0.03	0.15	Covered[3453]
YKL127W	PGM1	"Phosphoglucomutase, minor isoform; catalyzes the conversion from glucose-1-phosphate to glucose-6-phosphate, which is a key step in hexose metabolism"	Verified	chr11:203185-204897	203185-204897	98.4%	289.46	239.63	294.20	265.73	179.72	121.00	264.54	279.97	150.36	0.98	1.14	0.62	-0.90	-0.48	Matched[3454]
YKL126W	YPK1	"Serine/threonine protein kinase required for receptor-mediated endocytosis; involved in sphingolipid-mediated and cell integrity signaling pathways; localized to the bud neck, cytosol and plasma membrane; homolog of mammalian kinase SGK"	Verified	chr11:205351-207393	205351-207393	98.7%	294.93	308.80	308.31	288.98	412.90	309.30	301.86	298.64	361.10	1.11	1.21	1.50	0.27	0.21	Matched[3455]
YKL125W	RRN3	Protein required for transcription of rDNA by RNA polymerase I; transcription factor independent of DNA template; involved in recruitment of RNA polymerase I to rDNA	Verified	chr11:207891-209774	207891-209774	98.6%	123.24	79.65	70.50	41.44	42.51	23.68	101.44	55.97	33.10	0.37	0.23	0.14	-0.76	-0.47	Matched[3456]
YKL124W	SSH4	"Vacuolar protein that presumably functions within the endosomal-vacuolar trafficking pathway, affecting events that determine whether plasma membrane proteins are degraded or routed to the plasma membrane"	Verified	chr11:210237-211976	210237-211976	98.7%	48.35	72.23	58.83	58.25	81.55	66.41	60.29	58.54	73.98	0.22	0.24	0.31	0.34	0.69	Matched[3457]
YKL123W		"Dubious open reading frame, unlikely to encode a protein; partially overlaps the verified gene SSH4"	Dubious	chr11:211687-212067	211687-212067	98.9%	95.53	132.68	74.30	84.92	153.91	103.49	114.11	79.61	128.70	0.42	0.32	0.53	0.69	0.54	Covered/w/another[3457]
YKL122C	SRP21	"Subunit of the signal recognition particle (SRP), which functions in protein targeting to the endoplasmic reticulum membrane; not found in mammalian SRP; forms a pre-SRP structure in the nucleolus that is translocated to the cytoplasm"	Verified	chr11:212139-212642	212139-212642	99.1%	904.53	838.49	748.44	714.42	574.34	414.24	871.51	731.43	494.29	3.22	2.97	2.05	-0.57	-0.88	Matched[3458]
YKL121W		Putative protein of unknown function	Uncharacterized	chr11:213786-216344	213786-216344	98.9%	82.96	97.97	88.89	105.08	141.82	158.41	90.47	96.98	150.12	0.33	0.39	0.62	0.63	1.35	Matched[3460]
YKL120W	OAC1	"Mitochondrial inner membrane transporter, transports oxaloacetate, sulfate, and thiosulfate; member of the mitochondrial carrier family"	Verified	chr11:216988-217962	216988-217962	98.8%	398.62	418.34	330.10	241.87	74.74	35.29	408.48	285.99	55.02	1.51	1.16	0.23	-2.38	-2.16	Matched[3461]
YKL118W		"Dubious open reading frame, unlikely to encode a protein; partially overlaps the verified gene VPH2"	Dubious	chr11:218770-219081	218770-219081	99.6%	67.55	102.94	99.72	102.94	96.50	48.25	85.24	101.33	72.38	0.31	0.41	0.30	-0.49	0.03	Frag<80[3462]
YKL119C	VPH2	"Integral membrane protein required for vacuolar H+-ATPase (V-ATPase) function, although not an actual component of the V-ATPase complex; functions in the assembly of the V-ATPase; localized to the endoplasmic reticulum (ER)"	Verified	chr11:218214-218861	218214-218861	99.2%	286.14	301.69	275.25	227.05	265.92	147.74	293.92	251.15	206.83	1.08	1.02	0.86	-0.28	-0.68	Matched[3462]
YKL117W	SBA1	Co-chaperone that binds to and regulates Hsp90 family chaperones; important for pp60v-src activity in yeast; homologous to the mammalian p23 proteins and like p23 can regulate telomerase activity	Verified	chr11:219968-220618	219968-220618	97.0%	2109.26	2003.17	2015.84	2025.34	3713.38	2999.21	2056.22	2020.59	3356.29	7.59	8.20	13.91	0.73	0.03	Matched[3463]
YKL116C	PRR1	"Serine/threonine protein kinase that inhibits pheromone induced signalling downstream of MAPK, possibly at the level of the Ste12p transcription factor"	Verified	chr11:220988-222544	220988-222544	99.0%	116.73	107.65	104.40	107.00	88.84	57.07	112.19	105.70	72.95	0.41	0.43	0.30	-0.53	-0.15	Matched[3464]
YKL115C		"Dubious open reading frame, unlikely to encode a protein; partially overlaps the verified gene PRR1"	Dubious	chr11:222537-222929	222537-222929	98.7%	54.13	43.82	36.09	18.04	51.55	46.40	48.97	27.06	48.97	0.18	0.11	0.20	0.86	0.05	Covered/w/another[3464]
YKL114C	APN1	"Major apurinic/apyrimidinic endonuclease, 3'-repair diesterase involved in repair of DNA damage by oxidation and alkylating agents; also functions as a 3'-5' exonuclease to repair 7,8-dihydro-8-oxodeoxyguanosine"	Verified	chr11:222996-224099	222996-224099	99.3%	273.65	217.10	224.39	234.43	192.47	128.62	245.37	229.41	160.54	0.91	0.93	0.67	-0.51	-0.36	Covered/w/another[3465]
YKL113C	RAD27	"5' to 3' exonuclease, 5' flap endonuclease, required for Okazaki fragment processing and maturation as well as for long-patch base-excision repair; member of the S. pombe RAD2/FEN1 family"	Verified	chr11:224371-225519	224371-225519	99.4%	273.27	203.20	231.23	196.20	75.33	41.17	238.24	213.71	58.25	0.88	0.87	0.24	-1.88	-1.84	Covered/w/another[3465]
YKL112W	ABF1	"DNA binding protein with possible chromatin-reorganizing activity involved in transcriptional activation, gene silencing, and DNA replication and repair"	Verified	chr11:226214-228409	226214-228409	98.7%	221.93	144.88	235.31	190.09	219.62	219.16	183.40	212.70	219.39	0.68	0.86	0.91	0.04	0.60	Matched[3466]
YKL111C		"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related <i>Saccharomyces</i> species; partially overlaps the verified essential gene ABF1"	Dubious	chr11:228108-228443	228108-228443	98.4%	335.60	217.69	374.91	290.25	450.49	320.48	276.64	332.58	385.49	1.02	1.35	1.60	0.21	0.32	Covered/w/another[3466]
YKL110C	KTI12	"Protein that plays a role, with Elongator complex, in modification of wobble nucleosides in tRNA; involved in sensitivity to G1 arrest induced by zymocin; interacts with chromatin throughout the genome; also interacts with Cdc19p"	Verified	chr11:228583-229524	228583-229524	98.9%	212.55	212.55	159.95	145.99	211.48	112.72	212.55	152.97	162.10	0.78	0.62	0.67	0.08	-0.20	Matched[3467]
YKL109W	HAP4	"Subunit of the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression; provides the principal activation function of the complex"	Verified	chr11:231871-233535	231871-233535	98.9%	498.06	606.79	587.35	697.90	714.30	608.00	552.43	642.62	661.15	2.04	2.61	2.74	0.04	0.10	Covered[3470]
YKL108W	SLD2	"Protein required for DNA replication, phosphorylated in S phase by S-phase cyclin-dependent kinases (Cdks), phosphorylation is essential for DNA replication and for complex formation with Dpb11p; potential Cdc28p substrate"	Verified	chr11:234070-235431	234070-235431	98.4%	82.05	72.35	91.75	73.10	69.37	47.74	77.20	82.42	58.55	0.28	0.33	0.24	-0.49	-0.36	Matched[3471]
YKL107W		Putative protein of unknown function	Uncharacterized	chr11:235785-236714	235785-236714	98.4%	14.20	13.11	14.20	6.55	27.31	12.02	13.65	10.38	19.66	0.05	0.04	0.08	0.92	1.56	
YKL106C-A		Putative protein of unknown function; identified by homology to uncharacterized proteins in other fungi	Uncharacterized	chr11:236791-236910	236791-236910	98.8%	0.00	0.00	8.43	8.43	8.43	0.00	0.00	8.43	4.22	0.00	0.03	0.02	-1.00	0.58	Covered/w/another[3472]
YKL106W	AAT1	"Mitochondrial aspartate aminotransferase, catalyzes the conversion of oxaloacetate to aspartate in aspartate and asparagine biosynthesis"	Verified	chr11:237180-238535	237180-238535	98.8%	158.99	157.50	134.36	108.98	124.66	79.87	158.25	121.67	102.26	0.58	0.49	0.42	-0.25	0.93	Matched[3472]
YKL105C		Putative protein of unknown function	Uncharacterized	chr11:238829-242227	238829-242227	98.7%	88.25	112.11	91.53	106.74	112.40	145.50	100.18	99.14	128.95	0.37	0.40	0.53	0.38	0.83	Matched[3473]
YKL104C	GFA1	"Glutamine-fructose-6-phosphate amidotransferase, catalyzes the formation of glucosamine-6-P and glutamate from fructose-6-P and glutamine in the first step of chitin biosynthesis"	Verified	chr11:242864-245017	242864-245017	99.1%	532.55	444.96	509.60	475.88	493.68	451.52	488.76	492.74	472.60	1.80	2.00	1.96	-0.06	0.21	Frag>80[3474,3475,3476]
YKL103C	LAP4	"Vacuolar aminopeptidase, often used as a marker protein in studies of autophagy and cytosol to vacuole targeting (CVT) pathway"	Verified	chr11:245782-247326	245782-247326	98.8%	472.76	946.17	561.81	633.18	2130.03	2249.86	709.46	597.50	2189.94	2.62	2.43	9.07	1.87	1.70	Matched[3477]
YKL102C		Dubious open reading frame unlikely to encode a functional protein; deletion confers sensitivity to citric acid; predicted protein would include a thiol-disulfide oxidoreductase active site	Dubious	chr11:247706-248011	247706-248011	98.6%	6.63	9.94	6.63	6.63	19.89	13.26	8.29	6.63	16.57	0.03	0.03	0.07	1.32	0.38	Matched[3478]
YKL101W	HSL1	"Nim1p-related protein kinase that regulates the morphogenesis and septin checkpoints; associates with the assembled septin filament; required along with Hsl7p for bud neck recruitment, phosphorylation, and degradation of Swe1p"	Verified	chr11:248564-253120	248564-253120	98.8%	365.26	289.32	309.31	267.34	98.59	120.13	327.29	288.32	109.36	1.21	1.17	0.45	-1.40	-0.51	Matched[3479]
YKL100W-A		Putative protein of unknown function; identified by expression profiling and mass spectrometry	Dubious	chr11:253803-253892	253803-253892	99.2%	414.57	436.97	403.36	537.82	806.72	537.82	425.77	470.59	672.27	1.57	1.91	2.79	0.51	NaN	Covered/w/another[3480]
YKL100C		Putative protein of unknown function with similarity to a human minor histocompatibility antigen; YKL100C is not an essential gene	Uncharacterized	chr11:253341-255104	253341-255104	98.9%	314.00	361.55	374.73	380.46	689.30	449.22	337.77	377.60	569.26	1.25	1.53	2.36	0.59	1.07	Matched[3480]
YKL099C	UTP11	"Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA"	Verified	chr11:255364-256116	255364-256116	99.3%	268.93	159.22	191.33	145.84	28.10	4.01	214.07	168.58	16.06	0.79	0.68	0.07	-3.39	-4.57	Matched[3481]
YKL098W		Putative protein of unknown function	Uncharacterized	chr11:256414-257487	256414-257487	98.6%	129.38	118.99	114.27	85.94	102.94	73.66	124.18	100.10	88.30	0.46	0.41	0.37	-0.18	-0.07	Matched[3482]
YKL097C		"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related <i>Saccharomyces</i> species"	Dubious	chr11:258147-258557	258147-258557	98.2%	4.95	4.95	2.48	4.95	4.95	14.86	4.95	3.72	9.91	0.02	0.02	0.04	1.42	-0.02	
YKL096C-B		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr11:258717-258866	258717-258866	99.6%	1459.01	1592.86	1566.09	1673.17	756.27	709.43	1525.93	1619.63	732.85	5.63	6.57	3.04	-1.14	NaN	Matched[3483]
YKL096W-A	CWP2	"Covalently linked cell wall mannoprotein, major constituent of the cell wall; plays a role in stabilizing the cell wall; involved in low pH resistance; precursor is GPI-anchored"	Verified	chr11:258897-259175	258897-259175	99.3%	20350.73	22642.80	20188.30	17896.22	10052.64	6475.56	21496.77	19042.26	8264.10	79.35	77.30	34.24	-1.20	-3.01	Matched[3483]
YKL096W	CWP1	"Cell wall mannoprotein, linked to a beta-1,3- and beta-1,6-glucan heteropolymer through a phosphodiester bond; involved in cell wall organization"	Verified	chr11:260776-261495	260776-261495	98.6%	656.11	487.15	1420.63	1085.53	6570.93	4636.40	571.63	1253.08	5603.66	2.11	5.09	23.22	2.16	2.18	Matched[3486]
YKL095W	YJU2	"Essential nuclear protein; putative spliceosomal component involved in mRNA splicing, based on computational analysis of large-scale protein-protein interaction data"	Verified	chr11:261921-262757	261921-262757	98.2%	55.95	52.30	71.76	43.79	42.57	34.06	54.13	57.77	38.31	0.20	0.23	0.16	-0.59	0.34	Matched[3487]
YKL094W	YJU3	"Serine hydrolase with sequence similarity to monoglyceride lipase (MGL), localizes to lipid particles"	Verified	chr11:262993-263934	262993-263934	98.6%	362.92	440.46	393.07	331.69	1059.68	721.53	401.69	362.38	890.60	1.48	1.47	3.69	1.30	1.29	Matched[3488]
YKL093W	MBR1	"Protein involved in mitochondrial functions and stress response; overexpression suppresses growth defects of hap2, hap3, and hap4 mutants"	Verified	chr11:264433-265452	264433-265452	98.8%	63.49	65.48	61.51	68.46	167.67	123.02	64.49	64.98	145.34	0.24	0.26	0.60	1.16	1.77	Covered/w/another[3489]
YKL092C	BUD2	GTPase activating factor for Rsr1p/Bud1p required for both axial and bipolar budding patterns; mutants exhibit random budding in all cell types	Verified	chr11:265789-269103	265789-269103	99.3%	89.59	76.53	73.49	64.08	54.05	54.97	83.06	68.78	54.51	0.31	0.28	0.23	-0.34	-0.08	Covered/w/another[3489]
YKL091C		"Putative homolog of Sec14p, which is a phosphatidylinositol/phosphatidylcholine transfer protein involved in lipid metabolism; localizes to the nucleus"	Verified	chr11:269362-270294	269362-270294	99.0%	130.99	192.69	175.37	118.00	1396.48	628.96	161.84	146.68	1012.72	0.60	0.60	4.20	2.79	2.58	Matched[3490]
YKL090W	CUE2	"Protein of unknown function; has two CUE domains that bind ubiquitin, which may facilitate intramolecular monoubiquitination"	Verified	chr11:271522-272853	271522-272853	98.8%	96.48	88.12	74.45	53.94	113.95	67.61	92.30	64.19	90.78	0.34	0.26	0.38	0.50	0.98	Covered[3491]
YKL089W	MIF2	"Kinetochore protein with homology to human CENP-C, required for structural integrity of the spindle during anaphase spindle elongation, interacts with histones H2A, H2B, and H4, phosphorylated by Ipl1p"	Verified	chr11:273038-274687	273038-274687	98.5%	85.57	82.49	74.49	67.71	50.48	36.94	84.03	71.10	43.71	0.31	0.29	0.18	-0.70	-0.68	Matched[3492]
YKL088W		"Predicted phosphopantothenoylcysteine decarboxylase, may be involved in coenzyme A biosynthesis; interacts with Sis2p and Vhs3p"	Uncharacterized	chr11:274927-276642	274927-276642	98.3%	122.70	149.37	125.66	119.74	126.26	149.97	136.04	122.70	138.11	0.50	0.50	0.57	0.17	0.43	Matched[3493]
YKL087C	CYT2	"Cytochrome c1 heme lyase, involved in maturation of cytochrome c1, which is a subunit of the mitochondrial ubiquinol-cytochrome-c reductase; links heme covalently to apocytochrome c1"	Verified	chr11:276833-277507	276833-277507	98.9%	248.66	248.66	232.18	238.17	387.97	224.69	248.66	235.18	306.33	0.92	0.95	1.27	0.38	0.48	Matched[3494]
YKL086W	SRX1	"Sulfiredoxin, contributes to oxidative stress resistance by reducing cysteine-sulfinic acid groups in the peroxiredoxins Tsa1p and Ahp1p that are formed upon exposure to oxidants; conserved in higher eukaryotes"	Verified	chr11:277925-278308	277925-278308	98.0%	21.25	31.88	47.82	37.19	143.46	85.01	26.57	42.51	114.24	0.10	0.17	0.47	1.43	1.23	Matched[3495]
YKL085W	MDH1	"Mitochondrial malate dehydrogenase, catalyzes interconversion of malate and oxaloacetate; involved in the tricarboxylic acid (TCA) cycle; phosphorylated"	Verified	chr11:278767-279771	278767-279771	98.5%	1227.77	1835.59	1442.83	1979.97	3320.82	2685.74	1531.68	1711.40	3003.28	5.65	6.95	12.44	0.81	0.44	Matched[3496]
YKL084W	HOT13	"Mitochondrial intermembrane space protein, first component of a pathway mediating assembly of small TIM (Translocase of the Inner Membrane) complexes which escort hydrophobic inner membrane proteins en route to the TIM22 complex"	Verified	chr11:280153-280503	280153-280503	99.3%	154.91	94.67	152.04	143.44	97.54	57.38	124.79	147.74	77.46	0.46	0.60	0.32	-0.93	-0.60	Matched[3497]
YKL083W		"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related <i>Saccharomyces</i> species; partially overlaps the verified essential gene RRP14"	Dubious	chr11:280565-281179	280565-281179	98.1%	560.22	346.41	348.07	255.25	79.56	39.78	453.31	301.66	59.67	1.67	1.22	0.25	-2.34	-0.40	Frag<80[3497]
YKL082C	RRP14	"Essential protein, constituent of 66S pre-ribosomal particles; interacts with proteins involved in ribosomal biogenesis and cell polarity; member of the SURF-6 family"	Verified	chr11:280669-281973	280669-281973	99.6%	520.30	342.51	319.42	252.45	72.35	33.10	431.40	285.93	52.72	1.59	1.16	0.22	-2.44	-2.28	Matched[3498]
YKL081W	TEF4	Translation elongation factor EF-1 gamma	Verified	chr11:282535-284099	282535-282739,283066-284099	96.0%	6198.00	3753.94	5226.93	5102.50	1744.55	1374.62	4975.97	5164.72	1559.59	18.37	20.96	6.46	-1.73	-2.36	Frag>80[3499,3500]
YKL080W	VMA5	"Subunit C of the eight-subunit V1 peripheral membrane domain of vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; required for the V1 domain to assemble onto the vacuolar membrane"	Verified	chr11:284674-285852	284674-285852	99.1%	1616.78	1864.13	1517.49	1573.12	958.60	810.53	1740.45	1545.31	884.56	6.42	6.27	3.67	-0.80	-0.62	Frag>80[3501,3502]
YKL079W	SMY1	"Protein that interacts with Myo2p, proposed to be involved in exocytosis; N-terminal domain is related to the motor domain of kinesins"	Verified	chr11:286247-288217	286247-288217	98.8%	163.81	153.02	127.35	104.24	194.62	142.24	158.41	115.79	168.43	0.58	0.47	0.70	0.54	0.36	Matched[3503]
YKL078W	DHR2	"Predominantly nucleolar DEAH-box ATP-dependent RNA helicase, required for 18S rRNA synthesis"	Verified	chr11:288489-290696	288489-290696	98.6%	56.47	22.50	19.28	13.77	1.84	4.13	39.48	16.53	2.98	0.15	0.07	0.01	-2.47	-2.88	
YKL077W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the vacuole	Uncharacterized	chr11:291097-292275	291097-292275	98.8%	626.13	590.92	547.97	531.65	456.93	304.05	608.52	539.81	380.49	2.25	2.19	1.58	-0.50	-0.28	Matched[3504]
YKL076C	PSY1	"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; 69% of ORF overlaps the uncharacterized ORF YKL075C"	Dubious	chr11:292482-292865	292482-292865	99.3%	152.18	152.18	110.20	118.07	241.39	104.95	152.18	114.14	173.17	0.56	0.46	0.72	0.60	0.22	Covered/w/another[3505]
YKL075C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; proposed to be involved in resistance to streptozotocin and camptothecin	Uncharacterized	chr11:292600-293952	292600-293952	99.4%	111.57	91.49	96.70	87.77	112.32	72.89	101.53	92.23	92.61	0.37	0.37	0.38	0.01	0.02	Matched[3505]
YKL074C	MUD2	"Protein involved in early pre-mRNA splicing; component of the pre-mRNA-U1 snRNP complex, the commitment complex; interacts with Msl5p/BBP splicing factor and Sub2p; similar to metazoan splicing factor U2AF65"	Verified	chr11:294254-295837	294254-295837	99.3%	84.59	87.77	73.77	68.69	42.61	29.89	86.18	71.23	36.25	0.32	0.29	0.15	-0.97	-0.71	Matched[3506]
YKL073W	LHS1	"Molecular chaperone of the endoplasmic reticulum lumen, involved in polypeptide translocation and folding; member of the Hsp70 family; localizes to the lumen of the ER; regulated by the unfolded protein response pathway"	Verified	chr11:296074-298719	296074-298719	98.7%	302.00	240.37	251.09	259.89	244.96	154.63	271.18	255.49	199.80	1.00	1.04	0.83	-0.35	0.20	Matched[3507]
YKL072W	STB6	Protein that binds Sin3p in a two-hybrid assay	Verified	chr11:299226-301526	299226-301526	98.9%	71.66	90.56	61.11	53.63	42.20	32.53	81.11	57.37	37.37	0.30	0.23	0.15	-0.62	-0.61	Matched[3508]
YKL071W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr11:304758-305528	304758-305528	98.9%	106.20	106.20	97.02	51.13	39.33	30.16	106.20	74.08	34.74	0.39	0.30	0.14	-1.09	-0.27	Covered/w/another[3509]
YKL070W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr11:305855-306364	305855-306364	98.6%	99.44	133.26	81.54	79.56	99.44	65.63	116.35	80.55	82.54	0.43	0.33	0.34	0.04	0.17	Covered/w/another[3509]
YKL069W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus	Uncharacterized	chr11:306929-307471	306929-307471	98.6%	169.89	194.17	196.03	216.57	425.67	302.45	182.03	206.30	364.06	0.67	0.84	1.51	0.82	0.54	Matched[3510]
YKL068W-A		Putative protein of unknown function; identified by homology to <i>Ashbya gossypii</i>	Uncharacterized	chr11:308850-309086	308850-309086	98.6%	201.14	295.29	201.14	175.46	106.99	64.19	248.22	188.30	85.59	0.92	0.76	0.35	-1.14	NaN	Covered/w/another[3511]
YKL068W	NUP100	Subunit of the nuclear pore complex (NPC) that is localized to both sides of the pore; contains a repetitive GLFG motif that interacts with mRNA export factor Mex67p and with karyopherin Kap95p; homologous to Nup116p	Verified	chr11:309843-312722	309843-312722	98.9%	194.81	159.01	157.95	121.10	65.99	68.45	176.91	139.53	67.22	0.65	0.57	0.28	-1.05	-0.05	Covered/w/another[3511]
YKL067W	YNK1	"Nucleoside diphosphate kinase, catalyzes the transfer of gamma phosphates from nucleoside triphosphates, usually ATP, to nucleoside diphosphates by a mechanism that involves formation of an autophosphorylated enzyme intermediate"	Verified	chr11:314456-314917	314456-314917	98.5%	1591.35	1901.27	1488.05	1521.02	3488.23	2015.57	1746.31	1504.53	2751.90	6.45	6.11	11.40	0.87	0.68	Frag>80[3512,3513,3514]
YKL066W		"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related <i>Saccharomyces</i> species; partially overlaps the verified gene YNK1"	Dubious	chr11:314925-315368	314925-315368	99.2%	506.53	608.74	458.83	463.37	1235.66	572.40	557.64	461.10	904.03	2.06	1.87	3.75	0.97	-0.44	Frag>80[3512,3513,3514,3515]
YKL065W-A		Putative protein of unknown function	Uncharacterized	chr11:315598-315819	315598-315819	98.8%	27.35	36.47	36.47	22.79	173.22	123.08	31.91	29.63	148.15	0.12	0.12	0.61	2.32	NaN	Matched[3515]
YKL065C	YET1	"Endoplasmic reticulum transmembrane protein; may interact with ribosomes, based on co-purification experiments; homolog of human BAP31 protein"	Verified	chr11:316081-316701	316081-316701	99.0%	912.44	1188.94	975.87	1089.73	2698.29	1658.99	1050.69	1032.80	2178.64	3.88	4.19	9.03	1.08	0.61	Matched[3516]
YKL064W	MNR2	"Putative magnesium transporter; has similarity to Alr1p and Alr2p, which mediate influx of Mg2+ and other divalent cations"	Verified	chr11:317408-320317	317408-320317	98.7%	242.96	251.32	207.81	214.42	255.15	221.73	247.14	211.11	238.44	0.91	0.86	0.99	0.18	0.41	Covered/w/another[3517]
YKL063C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the Golgi	Uncharacterized	chr11:320659-321162	320659-321162	99.4%	530.76	634.52	403.06	494.85	624.54	331.23	582.64	448.95	477.88	2.15	1.82	1.98	0.09	-0.34	Covered/w/another[3517]
YKL062W	MSN4	"Transcriptional activator related to Msn2p; activated in stress conditions, which results in translocation from the cytoplasm to the nucleus; binds DNA at stress response elements of responsive genes, inducing gene expression"	Verified	chr11:322872-324764	322872-324764	98.9%	213.64	354.65	338.09	372.27	264.38	190.14	284.14	355.18	227.26	1.05	1.44	0.94	-0.64	-0.36	Matched[3519]
YKL061W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endosome	Uncharacterized	chr11:325415-325756	325415-325756	98.3%	175.46	163.57	148.70	142.75	231.97	148.70	169.52	145.72	190.33	0.63	0.59	0.79	0.39	0.04	Matched[3520]
YKL060C	FBA1	"Fructose 1,6-bisphosphate aldolase, required for glycolysis and gluconeogenesis; catalyzes conversion of fructose 1,6 bisphosphate to glyceraldehyde-3-P and dihydroxyacetone-P; locates to mitochondrial outer surface upon oxidative stress"	Verified	chr11:326052-327131	326052-327131	98.7%	55586.60	63058.75	53159.68	51482.31	40139.47	34679.59	59322.68	52320.99	37409.53	218.99	212.38	155.00	-0.48	-1.42	Frag>80[3520,3521,3522,3523,3524]
YKL059C	MPE1	"Essential conserved subunit of CPF (cleavage and polyadenylation factor), plays a role in 3' end formation of mRNA via the specific cleavage and polyadenylation of pre-mRNA, contains a putative RNA-binding zinc knuckle motif"	Verified	chr11:327762-329087	327762-329087	99.0%	117.29	95.96	113.48	92.16	100.53	65.50	106.63	102.82	83.02	0.39	0.42	0.34	-0.31	0.18	Matched[3525]
YKL058W	TOA2	"TFIIA small subunit; involved in transcriptional activation, acts as antirepressor or as coactivator; homologous to smallest subunit of human and Drosophila TFIIA"	Verified	chr11:329810-330178	329810-330178	98.4%	473.83	476.58	531.68	454.55	504.13	355.37	475.21	493.11	429.75	1.75	2.00	1.78	-0.20	-0.60	Matched[3526]
YKL057C	NUP120	"Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), required for even distribution of NPCs around the nuclear envelope, involved in establishment of a normal nucleocytoplasmic concentration gradient of the GTPase Gsp1p"	Verified	chr11:330500-333613	330500-333613	99.2%	147.69	158.38	142.51	123.72	91.66	75.46	153.03	133.11	83.56	0.56	0.54	0.35	-0.67	-0.59	Matched[3527]
YKL056C	TMA19	Protein that associates with ribosomes; homolog of translationally controlled tumor protein; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and relocates to the mitochondrial outer surface upon oxidative stress	Verified	chr11:334056-334559	334056-334559	99.0%	11513.83	8101.58	10096.40	9527.02	6092.72	5068.25	9807.70	9811.71	5580.49	36.20	39.83	23.12	-0.81	-1.81	Frag>80[3528,3529]
YKL055C	OAR1	"Mitochondrial 3-oxoacyl-[acyl-carrier-protein] reductase, may comprise a type II mitochondrial fatty acid synthase along with Mct1p"	Verified	chr11:334965-335801	334965-335801	99.0%	44.63	53.08	39.81	41.02	13.27	33.78	48.86	40.41	23.52	0.18	0.16	0.10	-0.78	-0.77	Matched[3530]
YKL054C	DEF1	"RNAPII degradation factor, forms a complex with Rad26p in chromatin, enables ubiquitination and proteolysis of RNAPII present in an elongation complex"	Verified	chr11:336181-338397	336181-338397	96.9%	822.19	641.55	677.40	495.83	541.92	476.28	731.87	586.61	509.10	2.70	2.38	2.11	-0.20	0.33	Frag>80[3531,3532,3533]
YKL053C-A	MDM35	Mitochondrial intermembrane space cysteine motif protein; mutation affects mitochondrial distribution and morphology	Verified	chr11:338826-339086	338826-339086	99.2%	687.70	745.65	722.47	722.47	1522.22	815.20	716.68	722.47	1168.71	2.65	2.93	4.84	0.69	-0.12	Matched[3533]
YKL053W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified ORF ASK1"	Dubious	chr11:339216-339590	339216-339590	99.0%	145.42	220.83	153.50	121.18	220.83	113.11	183.12	137.34	166.97	0.68	0.56	0.69	0.28	0.24	Matched[3534]
YKL052C	ASK1	"Essential subunit of the Dam1 complex (aka DASH complex), couples kinetochores to the force produced by MT depolymerization thereby aiding in chromosome segregation; phosphorylated during the cell cycle by cyclin-dependent kinases"	Verified	chr11:339312-340190	339312-340190	99.1%	145.74	216.89	164.10	154.92	173.28	123.94	181.31	159.51	148.61	0.67	0.65	0.62	-0.10	0.12	Frag>80[3533,3534,3535,3536]
YKL051W	SFK1	"Plasma membrane protein that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, at least partially mediates proper localization of Stt4p to the plasma membrane"	Verified	chr11:340956-342017	340956-342017	99.0%	296.62	335.60	234.83	186.34	328.95	344.16	316.11	210.58	336.56	1.17	0.85	1.39	0.68	0.81	Matched[3537]
YKL050C		Protein of unknown function; the YKL050W protein is a target of the SCFCdc4 ubiquitin ligase complex and YKL050W transcription is regulated by Azf1p	Verified	chr11:342496-345264	342496-345264	99.2%	32.02	32.02	19.65	12.37	16.74	23.65	32.02	16.01	20.20	0.12	0.06	0.08	0.33	0.84	Frag>80[3538,3539]
YKL049C	CSE4	"Centromere protein that resembles histones, required for proper kinetochore function; homolog of human CENP-A"	Verified	chr11:345719-346408	345719-346408	99.5%	107.84	99.10	115.13	99.10	104.92	81.61	103.47	107.11	93.27	0.38	0.43	0.39	-0.20	-0.16	Matched[3540]
YKL048C	ELM1	"Serine/threonine protein kinase that regulates cellular morphogenesis, septin behavior, and cytokinesis; required for the regulation of other kinases; forms part of the bud neck ring"	Verified	chr11:346858-348780	346858-348780	99.2%	68.14	77.05	67.09	64.47	47.70	49.27	72.60	65.78	48.49	0.27	0.27	0.20	-0.44	0.37	Matched[3541]
YKL047W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr11:349107-350657	349107-350657	99.0%	93.13	117.23	80.76	69.04	31.26	31.91	105.18	74.90	31.59	0.39	0.30	0.13	-1.25	-0.44	Matched[3542]
YKL046C	DCW1	"Putative mannosidase, GPI-anchored membrane protein required for cell wall biosynthesis in bud formation;homologous to Dfg5p"	Verified	chr11:350919-352268	350919-352268	99.1%	655.78	557.83	588.48	578.02	446.41	381.36	606.80	583.25	413.88	2.24	2.37	1.71	-0.49	-0.18	Matched[3543]
YKL045W	PRI2	"Subunit of DNA primase, which is required for DNA synthesis and double-strand break repair"	Verified	chr11:353137-354723	353137-354723	98.6%	195.47	153.31	173.75	137.98	74.74	59.41	174.39	155.86	67.07	0.64	0.63	0.28	-1.22	-1.46	Frag>80[3544,3545]
YKL044W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr11:355966-356286	355966-356286	99.2%	194.61	197.75	326.45	172.64	131.83	150.67	196.18	249.54	141.25	0.72	1.01	0.59	-0.82	-0.21	Matched[3546]
YKL043W	PHD1	"Transcriptional activator that enhances pseudohyphal growth; regulates expression of FLO11, an adhesin required for pseudohyphal filament formation; similar to StuA, an A. nidulans developmental regulator; potential Cdc28p substrate"	Verified	chr11:356392-357492	356392-357492	98.9%	596.26	764.38	847.99	576.96	399.65	509.90	680.32	712.48	454.77	2.51	2.89	1.88	-0.65	0.42	Frag>80[3546,3547]
YKL042W	SPC42	"Central plaque component of spindle pole body (SPB); involved in SPB duplication, may facilitate attachment of the SPB to the nuclear membrane"	Verified	chr11:358119-359210	358119-359210	98.8%	123.31	113.11	133.51	115.89	102.91	90.86	118.21	124.70	96.89	0.44	0.51	0.40	-0.36	-0.45	Frag>80[3548,3549]
YKL041W	VPS24	One of four subunits of the endosomal sorting complex required for transport III (ESCRT-III); forms an ESCRT-III subcomplex with Did4p; involved in the sorting of transmembrane proteins into the multivesicular body (MVB) pathway	Verified	chr11:359786-360460	359786-360460	98.1%	317.18	323.22	268.85	255.25	569.41	339.84	320.20	262.05	454.63	1.18	1.06	1.88	0.79	0.37	Matched[3550]
YKL040C	NFU1	"Protein involved in iron metabolism in mitochondria; similar to NifU, which is a protein required for the maturation of the Fe/S clusters of nitrogenase in nitrogen-fixing bacteria"	Verified	chr11:360701-361471	360701-361471	99.3%	336.87	287.25	330.34	322.51	313.37	214.13	312.06	326.42	263.75	1.15	1.33	1.09	-0.31	-0.36	Matched[3551]
YKL039W	PTM1	"Protein of unknown function, copurifies with late Golgi vesicles containing the v-SNARE Tlg2p"	Verified	chr11:362265-363836	362265-363836	98.9%	332.66	395.08	431.11	356.47	419.53	373.20	363.87	393.79	396.36	1.34	1.60	1.64	0.01	0.68	Matched[3553]
YKL038W	RGT1	Glucose-responsive transcription factor that regulates expression of several glucose transporter (HXT) genes in response to glucose; binds to promoters and acts both as a transcriptional activator and repressor	Verified	chr11:365248-368760	365248-368760	98.7%	76.40	89.08	87.35	89.08	113.30	147.31	82.74	88.22	130.30	0.31	0.36	0.54	0.56	1.17	Matched[3556]
YKL037W		Putative protein of unknown function	Uncharacterized	chr11:369008-369364	369008-369364	99.3%	31.04	19.76	39.51	31.04	42.33	22.58	25.40	35.28	32.46	0.09	0.14	0.13	-0.12	1.72	Covered/w/another[3556]
YKL035W	UGP1	"UDP-glucose pyrophosphorylase (UGPase), catalyses the reversible formation of UDP-Glc from glucose 1-phosphate and UTP, involved in a wide variety of metabolic pathways, expression modulated by Pho85p through Pho4p"	Verified	chr11:369534-371033	369534-371033	98.8%	1115.81	2367.89	1768.16	1950.98	10530.70	7921.97	1741.85	1859.57	9226.33	6.43	7.55	38.23	2.31	1.56	Matched[3557]
YKL036C		"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related <i>Saccharomyces</i> species; partially overlaps the essential gene UGP1 gene and uncharacterized ORF YKL037W"	Dubious	chr11:369171-369563	369171-369563	99.1%	189.97	336.29	243.88	364.53	1501.76	1221.95	263.13	304.20	1361.86	0.97	1.23	5.64	2.16	0.42	
YKL034W	TUL1	"Golgi-localized RING-finger ubiquitin ligase (E3), involved in ubiquitinating and sorting membrane proteins that contain polar transmembrane domains to multivesicular bodies for delivery to the vacuole for quality control purposes"	Verified	chr11:371472-373748	371472-373748	99.0%	102.02	125.08	116.21	120.65	112.66	87.82	113.55	118.43	100.24	0.42	0.48	0.42	-0.24	0.24	Matched[3558]
YKL033W-A		Putative protein of unknown function; similar to uncharacterized proteins from other fungi	Uncharacterized	chr11:374148-374858	374148-374858	98.7%	572.99	731.20	605.77	574.42	669.91	417.63	652.10	590.09	543.77	2.41	2.40	2.25	-0.12	-0.86	Matched[3559]
YKL033W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YKL033W is an essential gene"	Uncharacterized	chr11:375099-378215	375099-378215	98.9%	40.55	41.52	37.95	34.39	16.87	17.19	41.04	36.17	17.03	0.15	0.15	0.07	-1.09	-0.81	Matched[3560]
YKL032C	IXR1	"Protein that binds DNA containing intrastrand cross-links formed by cisplatin, contains two HMG (high mobility group box) domains, which confer the ability to bend cisplatin-modified DNA; mediates aerobic transcriptional repression of COX5b"	Verified	chr11:379708-381501	379708-381501	96.9%	288.35	276.26	267.05	262.45	254.96	244.60	282.30	264.75	249.78	1.04	1.07	1.03	-0.08	0.22	Matched[3561]
YKL031W		"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species"	Dubious	chr11:381715-382128	381715-382128	98.6%	12.25	49.01	24.50	12.25	26.96	26.96	30.63	18.38	26.96	0.11	0.07	0.11	0.55	0.42	Matched[3562]
YKL030W		"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related <i>Saccharomyces</i> species; partially overlaps the verified gene MAE1"	Dubious	chr11:382141-382746	382141-382746	95.7%	926.19	793.39	569.17	401.87	84.51	56.92	859.79	485.52	70.72	3.17	1.97	0.29	-2.78	-1.59	Covered/w/another[3563]
YKL029C	MAE1	"Mitochondrial malic enzyme, catalyzes the oxidative decarboxylation of malate to pyruvate, which is a key intermediate in sugar metabolism and a precursor for synthesis of several amino acids"	Verified	chr11:382359-384368	382359-384368	98.6%	857.90	745.93	522.51	378.26	62.54	38.33	801.92	450.38	50.44	2.96	1.83	0.21	-3.16	-2.44	Matched[3563]
YKL028W	TFA1	"TFIIE large subunit, involved in recruitment of RNA polymerase II to the promoter, activation of TFIIH, and promoter opening"	Verified	chr11:385401-386849	385401-386849	97.4%	367.85	396.20	338.79	290.59	267.20	244.52	382.02	314.69	255.86	1.41	1.28	1.06	-0.30	0.06	Matched[3565]
YKL027W		"Protein of unknown function, localized to the mitochondrial outer membrane"	Verified	chr11:387205-388548	387205-388548	98.6%	130.61	117.02	147.98	120.04	123.82	92.11	123.82	134.01	107.96	0.46	0.54	0.45	-0.31	-0.02	Matched[3566]
YKL026C	GPX1	Phospholipid hydroperoxide glutathione peroxidase induced by glucose starvation that protects cells from phospholipid hydroperoxides and nonphospholipid peroxides during oxidative stress	Verified	chr11:389023-389526	389023-389526	99.2%	77.99	123.98	61.99	75.99	925.85	595.90	100.98	68.99	760.87	0.37	0.28	3.15	3.46	2.92	Matched[3567]
YKL025C	PAN3	"Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex, which acts to control poly(A) tail length and regulate the stoichiometry and activity of postreplication repair complexes"	Verified	chr11:389883-391922	389883-391922	99.0%	154.53	191.18	175.83	169.88	207.52	190.68	172.85	172.85	199.10	0.64	0.70	0.82	0.20	0.53	Matched[3568]
YKL024C	URA6	"Uridylate kinase, catalyzes the seventh enzymatic step in the de novo biosynthesis of pyrimidines, converting uridine monophosphate (UMP) into uridine-5'-diphosphate (UDP)"	Verified	chr11:392169-392783	392169-392783	98.8%	607.49	602.55	614.08	548.22	342.43	271.64	605.02	581.15	307.04	2.23	2.36	1.27	-0.92	-0.76	Frag>80[3569,3570]
YKL023C-A		Putative protein of unknown function	Uncharacterized	chr11:392789-393016	392789-393016	99.1%	371.82	358.54	478.05	433.79	243.45	221.32	365.18	455.92	232.39	1.35	1.85	0.96	-0.97	NaN	Matched[3570]
YKL023W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr11:393364-394197	393364-394197	97.9%	121.25	181.26	165.34	146.97	274.34	193.51	151.26	156.15	233.93	0.56	0.63	0.97	0.58	0.49	Matched[3571]
YKL022C	CDC16	"Subunit of the anaphase-promoting complex/cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; required for sporulation"	Verified	chr11:394369-396891	394369-396891	99.2%	77.14	92.73	67.15	63.15	71.55	45.57	84.93	65.15	58.56	0.31	0.26	0.24	-0.15	-0.03	Matched[3572]
YKL021C	MAK11	"Protein involved in an early, nucleolar step of 60S ribosomal subunit biogenesis; essential for cell growth and replication of killer M1 dsRNA virus; contains four beta-transducin repeats"	Verified	chr11:396987-398393	396987-398393	99.3%	213.35	142.47	153.93	135.31	63.72	35.80	177.91	144.62	49.76	0.66	0.59	0.21	-1.54	-1.59	Frag>80[3573]
YKL020C	SPT23	"ER membrane protein involved in regulation of OLE1 transcription, acts with homolog Mga2p; inactive ER form dimerizes and one subunit is then activated by ubiquitin/proteasome-dependent processing followed by nuclear targeting"	Verified	chr11:398475-401723	398475-401723	98.7%	123.16	128.46	113.80	121.91	128.77	174.60	125.81	117.86	151.69	0.46	0.48	0.63	0.36	0.91	Matched[3574]
YKL019W	RAM2	Alpha subunit of both the farnesyltransferase and type I geranylgeranyltransferase that catalyze prenylation of proteins containing a CAAX consensus motif; essential protein required for membrane localization of Ras proteins and a-factor	Verified	chr11:402211-403161	402211-403161	98.7%	247.08	270.51	241.76	238.56	252.41	179.99	258.80	240.16	216.20	0.96	0.97	0.90	-0.15	0.00	Frag>80[3575,3576]
YKL018C-A		Putative protein of unknown function; identified by homology; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr11:403223-403522	403223-403522	99.6%	254.46	264.51	271.21	207.59	314.73	204.24	259.49	239.40	259.49	0.96	0.97	1.08	0.12	-0.28	Matched[3576]
YKL018W	SWD2	"Subunit of the COMPASS (Set1C) complex, which methylates histone H3 on lys 4 and is involved in telomeric silencing; subunit of CPF (cleavage and polyadenylation factor), a complex involved in RNAP II transcription termination"	Verified	chr11:403745-404734	403745-404734	99.0%	134.64	82.62	107.10	103.02	110.16	92.82	108.63	105.06	101.49	0.40	0.43	0.42	-0.05	0.41	Covered/w/another[3577]
YKL017C	HCS1	Hexameric DNA polymerase alpha-associated DNA helicase A involved in lagging strand DNA synthesis; contains single-stranded DNA stimulated ATPase and dATPase activities; replication protein A stimulates helicase and ATPase activities	Verified	chr11:404833-406884	404833-406884	99.2%	67.33	66.84	69.78	65.85	55.53	45.21	67.08	67.82	50.37	0.25	0.28	0.21	-0.43	-0.03	Covered/w/another[3577]
YKL016C	ATP7	"Subunit d of the stator stalk of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis"	Verified	chr11:407108-407632	407108-407632	99.2%	660.43	714.18	825.53	936.89	1299.74	990.64	687.30	881.21	1145.19	2.54	3.58	4.74	0.38	0.27	Matched[3578]
YKL015W	PUT3	"Transcriptional activator of proline utilization genes, constitutively binds PUT1 and PUT2 promoter sequences and undergoes a conformational change to form the active state; has a Zn(2)-Cys(6) binuclear cluster domain"	Verified	chr11:408187-411126	408187-411126	99.0%	79.74	78.71	68.06	61.53	97.96	61.18	79.23	64.79	79.57	0.29	0.26	0.33	0.30	0.51	Matched[3579]
YKL014C	URB1	"Nucleolar protein required for the normal accumulation of 25S and 5.8S rRNAs, associated with the 27SA2 pre-ribosomal particle; proposed to be involved in the biogenesis of the 60S ribosomal subunit"	Verified	chr11:411262-416556	411262-416556	99.2%	111.15	59.57	70.61	61.09	6.09	3.62	85.36	65.85	4.85	0.32	0.27	0.02	-3.76	-2.53	Frag>80[3580,3581,3582]
YKL013C	ARC19	"Subunit of the ARP2/3 complex, which is required for the motility and integrity of cortical actin patches"	Verified	chr11:417151-417666	417151-417666	99.2%	628.96	711.00	734.43	697.32	1097.75	796.94	669.98	715.88	947.34	2.47	2.91	3.93	0.40	0.36	Matched[3583]
YKL012W	PRP40	"U1 snRNP protein involved in splicing, interacts with the branchpoint-binding protein during the formation of the second commitment complex"	Verified	chr11:417953-419704	417953-419704	98.5%	148.37	148.95	142.57	140.25	166.33	131.56	148.66	141.41	148.95	0.55	0.57	0.62	0.07	0.34	Matched[3584]
YKL011C	CCE1	"Mitochondrial cruciform cutting endonuclease, cleaves Holliday junctions formed during recombination of mitochondrial DNA"	Verified	chr11:419798-420859	419798-420859	99.3%	76.80	96.72	72.06	80.60	100.51	52.15	86.76	76.33	76.33	0.32	0.31	0.32	0.00	0.04	Matched[3585]
YKL010C	UFD4	"Ubiquitin-protein ligase (E3) that interacts with Rpt4p and Rpt6p, two subunits of the 19S particle of the 26S proteasome; cytoplasmic E3 involved in the degradation of ubiquitin fusion proteins"	Verified	chr11:421067-425518	421067-425518	99.2%	86.01	94.84	69.71	68.58	95.97	124.03	90.42	69.15	110.00	0.33	0.28	0.46	0.67	0.97	Frag>80[3586,3587]
YKL009W	MRT4	"Protein involved in mRNA turnover and ribosome assembly, localizes to the nucleolus"	Verified	chr11:425885-426595	425885-426595	98.8%	748.71	357.27	492.50	382.90	72.59	27.04	552.99	437.70	49.82	2.04	1.78	0.21	-3.14	-3.69	Frag>80[3588,3589]
YKL008C	LAC1	"Ceramide synthase component, involved in synthesis of ceramide from C26(acyl)-coenzyme A and dihydrosphingosine or phytosphingosine, functionally equivalent to Lag1p"	Verified	chr11:426938-428194	426938-428194	98.9%	434.16	820.88	380.29	369.84	408.43	265.32	627.52	375.06	336.87	2.32	1.52	1.40	-0.15	-0.11	Matched[3590]
YKL007W	CAP1	Alpha subunit of the capping protein (CP) heterodimer (Cap1p and Cap2p) which binds to the barbed ends of actin filaments preventing further polymerization; localized predominantly to cortical actin patches	Verified	chr11:428945-429751	428945-429751	98.7%	512.24	556.18	478.34	457.00	743.25	494.66	534.21	467.67	618.96	1.97	1.90	2.56	0.40	0.05	Frag>80[3591,3592,3593,3594]
YKL006C-A	SFT1	"Intra-Golgi v-SNARE, required for transport of proteins between an early and a later Golgi compartment"	Verified	chr11:429841-430275	429841-430098,430240-430275	99.4%	369.70	356.01	195.12	253.32	287.55	143.77	362.86	224.22	215.66	1.34	0.91	0.89	-0.06	-0.75	Matched[3594]
YKL006W	RPL14A	"N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl14Bp and has similarity to rat L14 ribosomal protein; rpl14a csh5 double null mutant exhibits synthetic slow growth"	Verified	chr11:431549-432363	431549-431677,432076-432363	43.8%	7656.54	6275.41	7240.01	5908.20	1392.10	805.66	6965.97	6574.10	1098.88	25.71	26.69	4.55	-2.58	-3.84	Matched[3596]
YKL005C	BYE1	"Negative regulator of transcription elongation, contains a TFIIS-like domain and a PHD finger, multicopy suppressor of temperature-sensitive ess1 mutations, probably binds RNA polymerase II large subunit"	Verified	chr11:432736-434520	432736-434520	99.3%	127.49	133.13	105.49	83.49	144.42	93.64	130.31	94.49	119.03	0.48	0.38	0.49	0.33	0.60	Matched[3597]
YKL004W	AUR1	"Phosphatidylinositol:ceramide phosphoinositol transferase (IPC synthase), required for sphingolipid synthesis; can mutate to confer aureobasidin A resistance"	Verified	chr11:435223-436428	435223-436428	99.3%	475.99	450.94	436.74	364.93	133.61	114.41	463.47	400.84	124.01	1.71	1.63	0.51	-1.69	-1.11	Matched[3598]
YKL003C	MRP17	"Mitochondrial ribosomal protein of the small subunit; MRP17 exhibits genetic interactions with PET122, encoding a COX3-specific translational activator"	Verified	chr11:436740-437135	436740-437135	99.0%	331.49	374.84	344.24	331.49	443.69	303.44	353.17	337.87	373.57	1.30	1.37	1.55	0.14	0.13	Matched[3599]
YKL002W	DID4	"Class E Vps protein of the ESCRT-III complex, required for sorting of integral membrane proteins into lumenal vesicles of multivesicular bodies, and for delivery of newly synthesized vacuolar enzymes to the vacuole, involved in endocytosis"	Verified	chr11:437421-438187	437421-437480,437549-438187	98.2%	565.08	629.16	621.88	508.28	464.59	281.08	597.12	565.08	372.84	2.20	2.29	1.54	-0.60	-0.65	Matched[3600]
YKL001C	MET14	"Adenylylsulfate kinase, required for sulfate assimilation and involved in methionine metabolism"	Verified	chr11:438420-439028	438420-439028	99.2%	143.94	150.56	125.74	91.00	137.32	82.72	147.25	108.37	110.02	0.54	0.44	0.46	0.02	0.02	Matched[3601]
YKR001C	VPS1	"Dynamin-like GTPase required for vacuolar sorting; also involved in actin cytoskeleton organization, late Golgi-retention of some proteins, regulating peroxisome biogenesis"	Verified	chr11:440251-442365	440251-442365	99.1%	592.76	527.91	613.27	635.21	530.29	501.68	560.34	624.24	515.99	2.07	2.53	2.14	-0.27	0.39	Frag>80[3602,3603]
YKR002W	PAP1	"Poly(A) polymerase, one of three factors required for mRNA 3'-end polyadenylation, forms multiprotein complex with polyadenylation factor I (PF I), also required for mRNA nuclear export; may also polyadenylate rRNAs"	Verified	chr11:442875-444581	442875-444581	98.7%	184.06	194.16	212.56	169.22	237.50	176.34	189.11	190.89	206.92	0.70	0.77	0.86	0.12	0.48	Matched[3604]
YKR003W	OSH6	"Member of an oxysterol-binding protein family with overlapping, redundant functions in sterol metabolism and which collectively perform a function essential for viability; GFP-fusion protein localizes to the cell periphery"	Verified	chr11:445024-446370	445024-446370	98.8%	232.24	296.12	268.31	237.50	386.31	296.12	264.18	252.90	341.21	0.98	1.03	1.41	0.43	0.47	Matched[3605]
YKR004C	ECM9	Non-essential protein of unknown function	Verified	chr11:446442-447679	446442-447349,447454-447679	99.1%	100.52	98.74	94.29	83.62	127.21	81.84	99.63	88.95	104.52	0.37	0.36	0.43	0.23	0.26	Matched[3606]
YKR005C		Putative protein of unknown function	Uncharacterized	chr11:448164-449810	448164-449594,449664-449810	99.1%	19.82	24.29	13.42	15.34	23.01	8.31	22.05	14.38	15.66	0.08	0.06	0.06	0.12	0.46	Frag<80[3607,3608]
YKR006C	MRPL13	"Mitochondrial ribosomal protein of the large subunit, not essential for mitochondrial translation"	Verified	chr11:450066-450860	450066-450860	99.0%	378.47	375.93	382.28	384.82	360.69	331.48	377.20	383.55	346.09	1.39	1.56	1.43	-0.15	0.13	Frag>80[3607,3608,3609]
YKR007W	MEH1	"Component of the EGO complex, which is involved in the regulation of microautophagy, and of the GSE complex, which is required for proper sorting of amino acid permease Gap1p; loss results in a defect in vacuolar acidification"	Verified	chr11:451077-451631	451077-451631	98.2%	227.54	209.19	214.70	225.71	223.87	152.31	218.37	220.20	188.09	0.81	0.89	0.78	-0.23	-0.13	Matched[3610]
YKR008W	RSC4	Component of the RSC chromatin remodeling complex; found in close proximity to nucleosomal DNA; displaced from the surface of nucleosomal DNA after chromatin remodeling	Verified	chr11:451844-453721	451844-453721	99.0%	172.03	177.41	143.54	149.99	164.51	109.13	174.72	146.76	136.82	0.64	0.60	0.57	-0.10	0.39	Matched[3611]
YKR009C	FOX2	Multifunctional enzyme of the peroxisomal fatty acid beta-oxidation pathway; has 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase activities	Verified	chr11:453995-456697	453995-456697	99.1%	37.72	46.68	33.61	28.01	79.92	53.03	42.20	30.81	66.48	0.16	0.13	0.28	1.11	0.99	Frag>80[3612,3613]
YKR010C	TOF2	Nonessential mitochondrial protein of unknown function with sequence similarity to Net1p; identified as a topoisomerase I (Top1p) binding protein; displays synthetic genetic interactions with TOP1 and HPR1	Verified	chr11:458567-460882	458567-460882	99.2%	97.54	97.10	75.77	62.70	68.80	51.38	97.32	69.23	60.09	0.36	0.28	0.25	-0.20	-0.55	Matched[3614]
YKR011C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus	Uncharacterized	chr11:461278-462339	461278-462339	99.2%	167.97	199.29	265.72	321.71	1039.15	837.96	183.63	293.71	938.55	0.68	1.19	3.89	1.68	1.93	Frag>80[3615,3616]
YKR013W	PRY2	"Protein of unknown function, has similarity to Pry1p and Pry3p and to the plant PR-1 class of pathogen related proteins"	Verified	chr11:463602-464591	463602-464591	99.0%	910.24	726.56	916.37	736.77	168.37	110.21	818.40	826.57	139.29	3.02	3.36	0.58	-2.57	-1.94	Frag>80[3617,3618,3619]
YKR012C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene PRY2"	Dubious	chr11:463382-463759	463382-463759	99.1%	333.59	242.86	341.60	298.90	93.41	58.71	288.22	320.25	76.06	1.06	1.30	0.32	-2.07	-1.33	Matched[3617]
YKR014C	YPT52	"GTPase, similar to Ypt51p and Ypt53p and to mammalian rab5; required for vacuolar protein sorting and endocytosis"	Verified	chr11:465010-465714	465010-465714	99.4%	734.62	880.12	741.75	727.49	1369.39	865.85	807.37	734.62	1117.62	2.98	2.98	4.63	0.61	-0.01	Frag>80[3619,3620]
YKR015C		Putative protein of unknown function	Uncharacterized	chr11:466604-468310	466604-468310	99.4%	36.54	38.31	28.88	34.18	42.43	28.29	37.42	31.53	35.36	0.14	0.13	0.15	0.17	1.08	Matched[3621]
YKR016W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr11:469360-470982	469360-470982	98.7%	214.08	247.78	277.12	348.27	507.42	409.43	230.93	312.69	458.43	0.85	1.27	1.90	0.55	0.92	Matched[3622]
YKR017C		Putative protein of unknown function; contains a RING finger motif	Uncharacterized	chr11:471337-472992	471337-472992	99.3%	52.91	62.04	53.52	38.93	119.21	74.20	57.48	46.22	96.71	0.21	0.19	0.40	1.06	0.44	Matched[3623]
YKR018C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus	Uncharacterized	chr11:473366-475543	473366-475543	99.2%	315.67	311.05	318.91	317.06	386.49	419.36	313.36	317.99	402.92	1.16	1.29	1.67	0.34	0.69	Matched[3624]
YKR019C	IRS4	"Protein involved in regulation of phosphatidylinositol 4,5-bisphosphate concentrations; Irs4p and Tax4p bind and activate the phosphatase Inp51p; mutation confers an increase in rDNA silencing"	Verified	chr11:475859-477706	475859-477706	99.0%	42.65	51.94	43.74	24.60	47.57	28.98	47.30	34.17	38.27	0.17	0.14	0.16	0.16	0.58	Matched[3625]
YKR020W	VPS51	"Component of the GARP (Golgi-associated retrograde protein) complex, Vps51p-Vps52p-Vps53p-Vps54p, which is required for the recycling of proteins from endosomes to the late Golgi; links the (VFT/GARP) complex to the SNARE Tlg1p"	Verified	chr11:477981-478475	477981-478475	98.2%	142.01	150.24	104.97	117.31	164.65	102.91	146.13	111.14	133.78	0.54	0.45	0.55	0.27	0.36	Covered/w/another[3626]
YKR021W	ALY1	Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr11:478877-481624	478877-481624	99.0%	107.37	104.43	86.05	66.56	83.84	95.61	105.90	76.30	89.72	0.39	0.31	0.37	0.23	0.66	Covered/w/another[3626]
YKR022C	NTR2	"Essential protein that forms a dimer with Ntr1p; also forms a trimer, with Ntr2p and the DExD/H-box RNA helicase Prp43p, that is involved in spliceosome disassembly"	Verified	chr11:481814-482782	481814-482782	99.4%	150.48	166.05	131.80	127.65	157.74	74.72	158.26	129.72	116.23	0.58	0.53	0.48	-0.16	-0.36	Covered/w/another[3626]
YKR023W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr11:483062-484654	483062-484654	98.4%	97.00	97.64	99.56	86.15	102.11	65.09	97.32	92.86	83.60	0.36	0.38	0.35	-0.15	0.24	Matched[3627]
YKR024C	DBP7	Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis	Verified	chr11:484787-487015	484787-487015	99.1%	100.54	61.14	58.87	52.08	8.15	4.98	80.84	55.48	6.57	0.30	0.23	0.03	-3.08	-3.16	Matched[3628]
YKR025W	RPC37	RNA polymerase III subunit C37	Verified	chr11:487413-488261	487413-488261	98.1%	237.71	171.68	180.08	146.47	55.22	43.22	204.69	163.27	49.22	0.76	0.66	0.20	-1.73	-0.70	Matched[3629]
YKR026C	GCN3	"Alpha subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a positive regulator of GCN4 expression"	Verified	chr11:488381-489298	488381-489298	99.2%	314.17	271.33	294.40	246.06	123.03	73.60	292.75	270.23	98.32	1.08	1.10	0.41	-1.46	-1.31	Matched[3630]
YKR027W	BCH2	"Member of the Chs5p-Arf1p-binding proteins (ChAPs), a group of 4 related, interacting proteins (Bch1p, Fmp50p, Bud7p, Chs6p) that mediate export of specific cargo proteins, including chitin synthase Chs3p, from the Golgi to plasma membrane"	Verified	chr11:491007-493304	491007-493304	98.9%	70.41	81.41	59.40	56.76	61.61	49.28	75.91	58.08	55.44	0.28	0.24	0.23	-0.07	-0.02	Matched[3631]
YKR028W	SAP190	"Protein that forms a complex with the Sit4p protein phosphatase and is required for its function; member of a family of similar proteins including Sap4p, Sap155p, and Sap185p"	Verified	chr11:493900-497196	493900-497196	98.7%	208.46	200.77	183.86	155.27	112.84	117.14	204.61	169.56	114.99	0.76	0.69	0.48	-0.56	0.26	Matched[3632]
YKR029C	SET3	Defining member of the SET3 histone deacetylase complex which is a meiosis-specific repressor of sporulation genes; necessary for efficient transcription by RNAPII; one of two yeast proteins that contains both SET and PHD domains	Verified	chr11:497220-499475	497220-499475	99.3%	95.54	98.66	79.46	80.80	81.25	54.46	97.10	80.13	67.86	0.36	0.33	0.28	-0.24	0.00	Matched[3633]
YKR030W	GMH1	"Golgi membrane protein of unknown function, interacts with Gea1p and Gea2p; required for localization of Gea2p; computational analysis suggests a possible role in either cell wall synthesis or protein-vacuolar targeting"	Verified	chr11:499924-500745	499924-500745	99.1%	169.47	197.72	217.37	207.54	256.66	125.26	183.60	212.45	190.96	0.68	0.86	0.79	-0.15	-0.14	Covered[3634]
YKR031C	SPO14	"Phospholipase D, catalyzes the hydrolysis of phosphatidylcholine, producing choline and phosphatidic acid; involved in Sec14p-independent secretion; required for meiosis and spore formation; differently regulated in secretion and meiosis"	Verified	chr11:500986-506037	500986-506037	99.2%	84.58	98.94	74.60	75.80	67.82	99.14	91.76	75.20	83.48	0.34	0.31	0.35	0.15	0.36	Frag>80[3635]
YKR032W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr11:506159-506473	506159-506473	99.1%	0.00	3.20	0.00	0.00	0.00	3.20	1.60	0.00	1.60	0.01	0.00	0.01	Inf	0.11	
YKR034W	DAL80	"Negative regulator of genes in multiple nitrogen degradation pathways; expression is regulated by nitrogen levels and by Gln3p; member of the GATA-binding family, forms homodimers and heterodimers with Deh1p"	Verified	chr11:506540-507349	506540-507349	98.6%	3.76	3.76	3.76	2.51	2.51	7.52	3.76	3.13	5.01	0.01	0.01	0.02	0.68	0.46	
YKR033C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene DAL80"	Dubious	chr11:506521-506946	506521-506946	98.5%	4.76	0.00	4.76	0.00	4.76	7.15	2.38	2.38	5.96	0.01	0.01	0.02	1.32	-0.16	
YKR035W-A	DID2	"Class E protein of the vacuolar protein-sorting (Vps) pathway, associates reversibly with the late endosome, has human ortholog that may be altered in breast tumors"	Verified	chr11:507581-508195	507581-508195	98.2%	323.05	286.60	303.17	324.70	447.30	278.32	304.83	313.94	362.81	1.13	1.27	1.50	0.21	-0.18	Matched[3636]
YKR035C	OPI8	"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified gene DID2/YKR035W-A"	Dubious	chr11:507562-508203	507562-508203	98.2%	318.86	290.30	299.82	325.20	452.11	282.37	304.58	312.51	367.24	1.12	1.27	1.52	0.23	-0.36	Matched[3636]
YKR036C	CAF4	"WD40 repeat-containing protein associated with the CCR4-NOT complex, interacts in a Ccr4p-dependent manner with Ssn2p; also interacts with Fis1p, Mdv1p and Dnm1p and plays a role in mitochondrial fission"	Verified	chr11:508344-510275	508344-510275	99.2%	104.88	117.40	89.74	78.79	54.26	48.52	111.14	84.27	51.39	0.41	0.34	0.21	-0.71	-0.49	Matched[3637]
YKR037C	SPC34	"Essential subunit of the Dam1 complex (aka DASH complex), couples kinetochores to the force produced by MT depolymerization thereby aiding in chromosome segregation; also localized to nuclear side of spindle pole body"	Verified	chr11:510552-511439	510552-511439	99.1%	107.91	114.72	86.33	87.46	147.66	117.00	111.32	86.89	132.33	0.41	0.35	0.55	0.61	0.53	Matched[3638]
YKR038C	KAE1	"Putative glycoprotease proposed to be in transcription as a component of the EKC protein complex with Bud32p, Cgi121p, Pcc1p, and Gon7p; also identified as a component of the KEOPS protein complex"	Verified	chr11:511641-512801	511641-512801	99.0%	202.75	196.66	221.02	163.59	158.37	115.73	199.70	192.31	137.05	0.74	0.78	0.57	-0.49	0.04	Matched[3639]
YKR039W	GAP1	General amino acid permease; localization to the plasma membrane is regulated by nitrogen source	Verified	chr11:514705-516513	514705-516513	98.7%	147.24	123.16	227.29	205.46	89.01	80.06	135.20	216.38	84.53	0.50	0.88	0.35	-1.36	-0.95	Matched[3641]
YKR041W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus	Uncharacterized	chr11:517840-518592	517840-518592	97.9%	36.61	24.41	17.63	13.56	12.20	9.49	30.51	15.59	10.85	0.11	0.06	0.04	-0.52	-0.24	Matched[3643]
YKR040C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YKR041W"	Dubious	chr11:517705-518208	517705-518208	95.4%	37.43	33.27	16.63	12.48	14.55	16.63	35.35	14.55	15.59	0.13	0.06	0.06	0.10	0.15	Matched[3643]
YKR042W	UTH1	"Mitochondrial outer membrane and cell wall localized SUN family member required for mitochondrial autophagy; involved in the oxidative stress response, life span during starvation, mitochondrial biogenesis, and cell death"	Verified	chr11:519169-520266	519169-520266	98.8%	3904.00	3783.26	3868.98	3407.24	3931.65	3185.13	3843.63	3638.11	3558.39	14.19	14.77	14.74	-0.03	-0.72	Matched[3644]
YKR043C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus	Uncharacterized	chr11:520539-521354	520539-521354	98.9%	843.52	694.88	772.91	626.75	200.66	163.50	769.20	699.83	182.08	2.84	2.84	0.75	-1.94	-1.21	Matched[3645]
YKR044W	UIP5	"Protein of unknown function that interacts with Ulp1p, a Ubl (ubiquitin-like protein)-specific protease for Smt3p protein conjugates"	Verified	chr11:521657-522988	521657-522988	98.6%	184.27	156.10	121.83	86.04	70.05	42.64	170.18	103.94	56.35	0.63	0.42	0.23	-0.88	-1.16	Matched[3646]
YKR045C		Putative protein of unknown function; epitope-tagged protein localizes to the cytoplasm	Uncharacterized	chr11:523060-523611	523060-523611	98.4%	88.37	99.42	79.17	69.96	73.64	66.28	93.89	74.56	69.96	0.35	0.30	0.29	-0.09	0.22	Covered/w/another[3646]
YKR046C	PET10	Protein of unknown function that co-purifies with lipid particles; expression pattern suggests a role in respiratory growth; computational analysis of large-scale protein-protein interaction data suggests a role in ATP/ADP exchange	Verified	chr11:523865-524716	523865-524716	98.5%	463.58	642.34	524.36	494.56	784.15	398.03	552.96	509.46	591.09	2.04	2.07	2.45	0.21	0.47	Matched[3647]
YKR047W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene NAP1"	Dubious	chr11:524899-525204	524899-525204	98.4%	744.08	700.90	744.08	581.31	916.82	647.75	722.49	662.70	782.28	2.67	2.69	3.24	0.24	0.44	
YKR048C	NAP1	Protein that interacts with mitotic cyclin Clb2p; required for the regulation of microtubule dynamics during mitosis; controls bud morphogenesis; involved in the transport of H2A and H2B histones to the nucleus	Verified	chr11:525029-526282	525029-526282	98.8%	647.30	590.80	641.65	622.28	808.72	735.27	619.05	631.96	771.99	2.29	2.57	3.20	0.29	0.65	Matched[3648]
YKR049C	FMP46	"Putative redox protein containing a thioredoxin fold; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr11:526472-526873	526472-526873	98.8%	163.71	214.08	183.86	166.23	1125.83	798.40	188.90	175.04	962.12	0.70	0.71	3.99	2.46	2.05	Covered/w/another[3649]
YKR050W	TRK2	Component of the Trk1p-Trk2p potassium transport system	Verified	chr11:527457-530126	527457-530126	98.8%	81.16	84.96	84.58	57.65	77.75	73.58	83.06	71.11	75.66	0.31	0.29	0.31	0.09	0.79	Covered/w/another[3649]
YKR051W		Putative protein of unknown function	Uncharacterized	chr11:530588-531844	530588-531844	99.0%	149.45	184.81	177.58	163.11	217.75	134.99	167.13	170.34	176.37	0.62	0.69	0.73	0.05	0.32	Covered/w/another[3649]
YKR052C	MRS4	"Mitochondrial iron transporter of the mitochondrial carrier family (MCF), very similar to and functionally redundant with Mrs3p; functions under low-iron conditions; may transport other cations in addition to iron"	Verified	chr11:532192-533106	532192-533106	98.8%	97.34	90.70	128.31	87.39	396.00	301.98	94.02	107.85	348.99	0.35	0.44	1.45	1.69	1.43	Covered/w/another[3649]
YKR053C	YSR3	"Dihydrosphingosine 1-phosphate phosphatase, membrane protein involved in sphingolipid metabolism; has similarity to Lcb3p"	Verified	chr11:533709-534923	533709-534923	99.0%	75.68	65.70	70.69	44.08	58.21	30.77	70.69	57.38	44.49	0.26	0.23	0.18	-0.37	-0.02	Covered/w/another[3649]
YKR054C	DYN1	"Cytoplasmic heavy chain dynein, microtubule motor protein, required for anaphase spindle elongation; involved in spindle assembly, chromosome movement, and spindle orientation during cell division, targeted to microtubule tips by Pac1p"	Verified	chr11:535289-547567	535289-547567	99.2%	34.63	42.02	29.05	27.24	17.89	27.82	38.32	28.15	22.85	0.14	0.11	0.09	-0.30	0.53	Frag<80[3650]
YKR055W	RHO4	"Non-essential small GTPase of the Rho/Rac subfamily of Ras-like proteins, likely to be involved in the establishment of cell polarity"	Verified	chr11:547858-548733	547858-548733	98.7%	76.32	78.63	67.07	83.26	148.01	91.35	77.48	75.16	119.68	0.29	0.31	0.50	0.67	0.94	Matched[3651]
YKR056W	TRM2	"tRNA methyltransferase, 5-methylates the uridine residue at position 54 of tRNAs and may also have a role in tRNA stabilization or maturation; endo-exonuclease with a role in DNA repair"	Verified	chr11:549090-551009	549090-551009	98.8%	153.98	90.70	75.41	56.95	11.07	3.16	122.34	66.18	7.12	0.45	0.27	0.03	-3.22	-2.99	Frag>80[3652]
YKR057W	RPS21A	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps21Bp and has similarity to rat S21 ribosomal protein	Verified	chr11:551299-551884	551299-551322,551645-551884	82.1%	7480.10	5832.72	6709.48	6063.45	1601.23	1555.09	6656.41	6386.46	1578.16	24.57	25.92	6.54	-2.02	-2.86	Matched[3653]
YKR058W	GLG1	"Self-glucosylating initiator of glycogen synthesis, also glucosylates n-dodecyl-beta-D-maltoside; similar to mammalian glycogenin"	Verified	chr11:552412-554262	552412-554262	98.8%	104.48	216.08	206.78	234.68	367.06	327.67	160.28	220.73	347.37	0.59	0.90	1.44	0.65	1.19	Matched[3654]
YKR059W	TIF1	"Translation initiation factor eIF4A, identical to Tif2p; DEA(D/H)-box RNA helicase that couples ATPase activity to RNA binding and unwinding; forms a dumbbell structure of two compact domains connected by a linker; interacts with eIF4G"	Verified	chr11:554629-555816	554629-555816	6.1%	3013.82	2101.38	2447.00	2723.50	1188.94	1064.52	2557.60	2585.25	1126.73	9.44	10.49	4.67	-1.20	-1.97	Frag<80[3655,3656,3657,3658]
YKR060W	UTP30	"Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data"	Verified	chr11:556160-556984	556160-556984	98.8%	154.64	103.09	106.78	71.18	20.86	29.46	128.87	88.98	25.16	0.48	0.36	0.10	-1.82	-2.00	Covered/w/another[3659]
YKR061W	KTR2	Mannosyltransferase involved in N-linked protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family	Verified	chr11:557319-558596	557319-558596	98.8%	87.92	106.93	72.08	53.86	91.88	45.94	97.43	62.97	68.91	0.36	0.26	0.29	0.13	0.34	Covered/w/another[3659]
YKR062W	TFA2	"TFIIE small subunit, involved in RNA polymerase II transcription initiation"	Verified	chr11:559308-560294	559308-560294	98.5%	232.44	221.13	238.61	226.27	280.78	233.47	226.78	232.44	257.12	0.84	0.94	1.07	0.15	0.06	Matched[3660]
YKR063C	LAS1	Essential nuclear protein possibly involved in bud formation and morphogenesis; mutants require the SSD1-v allele for viability	Verified	chr11:560431-561939	560431-561939	99.5%	137.89	124.57	96.59	77.27	25.31	13.99	131.23	86.93	19.65	0.48	0.35	0.08	-2.15	-1.91	Matched[3661]
YKR064W	OAF3	"Zinc cluster protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr11:562189-564780	562189-564780	98.9%	80.33	77.21	65.52	56.94	54.99	56.55	78.77	61.23	55.77	0.29	0.25	0.23	-0.13	0.24	Matched[3662]
YKR065C	PAM17	"Presequence translocase-associated motor subunit, required for stable complex formation between cochaperones Pam16p and Pam18p, promotes association of Pam16p-Pam18p with the presequence translocase"	Verified	chr11:564941-565534	564941-565534	98.4%	437.89	431.05	496.04	431.05	514.86	424.20	434.47	463.54	469.53	1.60	1.88	1.95	0.02	0.17	Matched[3663]
YKR066C	CCP1	"Mitochondrial cytochrome-c peroxidase; degrades reactive oxygen species in mitochondria, involved in the response to oxidative stress"	Verified	chr11:565755-566840	565755-566840	98.6%	451.21	679.15	554.90	572.65	1648.83	1549.80	565.18	563.78	1599.31	2.09	2.29	6.63	1.50	1.46	Matched[3664]
YKR067W	GPT2	Glycerol-3-phosphate/dihydroxyacetone phosphate dual substrate-specific sn-1 acyltransferase located in lipid particles and the ER; involved in the stepwise acylation of glycerol-3-phosphate and dihydroxyacetone in lipid biosynthesis	Verified	chr11:567560-569791	567560-569791	98.8%	138.72	182.24	220.32	247.97	663.22	533.11	160.48	234.14	598.16	0.59	0.95	2.48	1.35	1.43	Frag>80[3665,3666]
YKR068C	BET3	Hydrophilic protein that acts in conjunction with SNARE proteins in targeting and fusion of ER to Golgi transport vesicles; component of the TRAPP (transport protein particle) complex	Verified	chr11:569970-570551	569970-570551	99.4%	292.24	349.30	318.18	281.86	335.47	186.76	320.77	300.02	261.11	1.18	1.22	1.08	-0.20	-0.08	Matched[3667]
YKR069W	MET1	"S-adenosyl-L-methionine uroporphyrinogen III transmethylase, involved in the biosynthesis of siroheme, a prosthetic group used by sulfite reductase; required for sulfate assimilation and methionine biosynthesis"	Verified	chr11:571254-573035	571254-573035	98.6%	50.08	75.70	45.53	43.25	49.52	37.56	62.89	44.39	43.54	0.23	0.18	0.18	-0.03	0.34	Matched[3668]
YKR070W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr11:573216-574274	573216-574274	98.7%	184.72	189.50	187.59	196.20	268.94	192.38	187.11	191.90	230.66	0.69	0.78	0.96	0.27	0.32	Matched[3669]
YKR071C	DRE2	Protein of unknown function; mutation displays synthetic lethal interaction with the pol3-13 allele of CDC2	Verified	chr11:574576-575622	574576-575622	99.2%	281.27	271.63	238.88	211.91	262.96	239.85	276.45	225.40	251.40	1.02	0.91	1.04	0.16	0.31	Frag<80[3670]
YKR072C	SIS2	Negative regulatory subunit of the protein phosphatase 1 Ppz1p; involved in ion homeostasis and cell cycle progression	Verified	chr11:576077-577765	576077-577765	97.1%	231.13	216.49	210.39	181.73	148.80	146.36	223.81	196.06	147.58	0.83	0.80	0.61	-0.41	0.27	Matched[3671]
YKR073C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr11:577829-578149	577829-578149	98.3%	19.02	31.70	41.21	25.36	22.19	34.87	25.36	33.28	28.53	0.09	0.14	0.12	-0.22	0.59	Overlap[3671]
YKR074W		Putative protein of unknown function; epitope-tagged protein localizes to the cytoplasm	Uncharacterized	chr11:578851-579318	578851-579318	98.9%	535.78	449.37	527.14	542.26	1289.77	758.30	492.57	534.70	1024.03	1.82	2.17	4.24	0.94	0.20	Matched[3672]
YKR075W-A		"Dubious open reading frame unlikely to encode a protein; completely overlaps the uncharacterized gene YKR075W; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr11:579854-580123	579854-580123	99.2%	70.95	138.17	37.34	56.01	11.20	3.73	104.56	46.68	7.47	0.39	0.19	0.03	-2.64	NaN	Matched[3674]
YKR075C		Protein of unknown function; similar to YOR062Cp and Reg1p; expression regulated by glucose and Rgt1p; GFP-fusion protein is induced in response to the DNA-damaging agent MMS	Uncharacterized	chr11:579469-580392	579469-580392	98.9%	84.24	146.60	56.89	56.89	25.16	21.88	115.42	56.89	23.52	0.43	0.23	0.10	-1.27	-0.70	Frag>80[3672,3673,3674]
YKR076W	ECM4	Omega class glutathione transferase; not essential; similar to Ygr154cp; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Verified	chr11:581925-583037	581925-583037	98.7%	59.16	73.72	87.37	85.55	316.72	285.78	66.44	86.46	301.25	0.25	0.35	1.25	1.80	2.16	Matched[3676]
YKR077W		"Putative transcriptional activator, identified by high-throughput two-hybrid experiments; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YKR077W is not an essential gene"	Uncharacterized	chr11:583295-584386	583295-584386	99.2%	132.03	159.72	130.18	103.40	77.55	54.47	145.87	116.79	66.01	0.54	0.47	0.27	-0.82	-0.02	Matched[3677]
YKR078W		"Cytoplasmic protein of unknown function, has similarity to Vps5p; potential Cdc28p substrate; contains a Phox homology (PX) domain and specifically binds phosphatidylinositol 3-phosphate (PtdIns-3-P)"	Verified	chr11:584594-586351	584594-586351	98.8%	73.72	66.81	60.47	59.32	56.44	42.62	70.26	59.90	49.53	0.26	0.24	0.21	-0.27	0.15	Matched[3678]
YKR079C	TRZ1	"tRNase Z, involved in RNA processing, has two putative nucleotide triphosphate-binding motifs (P-loop) and a conserved histidine motif, homolog of the human candidate prostate cancer susceptibility gene ELAC2"	Verified	chr11:586431-588947	586431-588947	99.3%	104.45	83.64	76.04	60.83	14.41	6.00	94.05	68.43	10.20	0.35	0.28	0.04	-2.75	-2.38	Frag>80[3679]
YKR080W	MTD1	"NAD-dependent 5,10-methylenetetrahydrafolate dehydrogenase, plays a catalytic role in oxidation of cytoplasmic one-carbon units; expression is regulated by Bas1p and Bas2p, repressed by adenine, and may be induced by inositol and choline"	Verified	chr11:590037-590999	590037-590999	98.7%	1320.13	1128.68	1361.15	921.46	325.04	146.21	1224.40	1141.30	235.62	4.52	4.63	0.98	-2.28	-2.46	Matched[3680]
YKR081C	RPF2	Essential protein involved in the processing of pre-rRNA and the assembly of the 60S ribosomal subunit; interacts with ribosomal protein L11; localizes predominantly to the nucleolus; constituent of 66S pre-ribosomal particles	Verified	chr11:591148-592182	591148-592182	99.4%	332.56	164.34	211.98	168.23	18.48	0.97	248.45	190.11	9.72	0.92	0.77	0.04	-4.29	-4.06	Matched[3681]
YKR082W	NUP133	"Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), localizes to both sides of the NPC, required to establish a normal nucleocytoplasmic concentration gradient of the GTPase Gsp1p"	Verified	chr11:592467-595940	592467-595940	99.1%	141.77	115.04	114.17	112.72	61.30	49.97	128.40	113.44	55.63	0.47	0.46	0.23	-1.03	-0.52	Matched[3682]
YKR083C	DAD2	"Essential subunit of the Dam1 complex (aka DASH complex), couples kinetochores to the force produced by MT depolymerization thereby aiding in chromosome segregation; is transferred to the kinetochore prior to mitosis"	Verified	chr11:596063-596464	596063-596464	99.7%	149.66	174.60	199.54	142.17	169.61	117.23	162.13	170.86	143.42	0.60	0.69	0.59	-0.25	-0.49	Covered/w/another[3682]
YKR084C	HBS1	"GTP binding protein with sequence similarity to the elongation factor class of G proteins, EF-1alpha and Sup35p; associates with Dom34p, and shares a similar genetic relationship with genes that encode ribosomal protein components"	Verified	chr11:596697-598532	596697-598532	99.2%	186.08	163.02	163.02	165.22	149.85	133.93	174.55	164.12	141.89	0.64	0.67	0.59	-0.21	0.17	Matched[3683]
YKR085C	MRPL20	Mitochondrial ribosomal protein of the large subunit	Verified	chr11:598736-599323	598736-599323	99.1%	458.30	339.87	435.99	382.78	351.88	180.23	399.08	409.38	266.06	1.47	1.66	1.10	-0.62	-1.02	Matched[3684]
YKR086W	PRP16	"RNA helicase in the DEAH-box family involved in the second catalytic step of splicing, exhibits ATP-dependent RNA unwinding activity"	Verified	chr11:599499-602714	599499-602714	98.7%	83.76	81.87	63.61	51.01	29.91	20.78	82.81	57.31	25.35	0.31	0.23	0.11	-1.18	-0.90	Matched[3685]
YKR087C	OMA1	"Metalloendopeptidase of the mitochondrial inner membrane, involved in turnover of membrane-embedded proteins; member of a family of predicted membrane-bound metallopeptidases in prokaryotes and higher eukaryotes"	Verified	chr11:602837-603874	602837-603874	99.2%	144.76	131.16	132.13	106.87	177.79	88.41	137.96	119.50	133.10	0.51	0.49	0.55	0.16	0.11	Matched[3686]
YKR088C	TVP38	Integral membrane protein localized to late Golgi vesicles along with the v-SNARE Tlg2p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern	Verified	chr11:604047-605060	604047-605060	99.0%	246.97	287.80	245.98	225.06	257.93	171.29	267.39	235.52	214.61	0.99	0.96	0.89	-0.13	-0.09	Matched[3687]
YKR089C	TGL4	Triacylglycerol lipase involved in triacylglycerol mobilization and degradation; found in lipid particles; potential Cdc28p substrate	Verified	chr11:605275-608007	605275-608007	98.9%	193.51	238.65	256.78	241.61	305.61	269.73	216.08	249.19	287.67	0.80	1.01	1.19	0.21	0.44	Frag>80[3688,3689]
YKR090W	PXL1	"LIM domain-containing protein that localizes to sites of polarized growth, required for selection and/or maintenance of polarized growth sites, may modulate signaling by the GTPases Cdc42p and Rho1p; has similarity to metazoan paxillin"	Verified	chr11:608588-610708	608588-610708	98.6%	99.92	106.61	94.18	87.96	99.44	77.93	103.26	91.07	88.68	0.38	0.37	0.37	-0.04	0.42	Matched[3690]
YKR091W	SRL3	"Cytoplasmic protein that, when overexpressed, suppresses the lethality of a rad53 null mutation; potential Cdc28p substrate"	Verified	chr11:611167-611907	611167-611907	98.8%	75.15	154.40	110.67	118.87	654.48	427.67	114.77	114.77	541.08	0.42	0.47	2.24	2.24	1.80	Matched[3691]
YKR092C	SRP40	"Nucleolar, serine-rich protein with a role in preribosome assembly or transport; may function as a chaperone of small nucleolar ribonucleoprotein particles (snoRNPs); immunologically and structurally to rat Nopp140"	Verified	chr11:612307-613527	612307-613527	96.4%	558.79	388.10	372.81	279.40	90.87	45.86	473.44	326.10	68.36	1.75	1.32	0.28	-2.25	-1.80	Matched[3692]
YKR093W	PTR2	"Integral membrane peptide transporter, mediates transport of di- and tri-peptides; conserved protein that contains 12 transmembrane domains; PTR2 expression is regulated by the N-end rule pathway via repression by Cup9p"	Verified	chr11:615372-617177	615372-617177	99.0%	392.51	715.68	480.29	582.05	230.92	253.84	554.10	531.17	242.38	2.05	2.16	1.00	-1.13	-0.86	Matched[3693]
YKR094C	RPL40B	"Fusion protein, identical to Rpl40Ap, that is cleaved to yield ubiquitin and a ribosomal protein of the large (60S) ribosomal subunit with similarity to rat L40; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes"	Verified	chr11:617638-618392	617638-618016,618385-618392	49.7%	8206.28	6448.54	6781.36	6063.71	1284.51	712.46	7327.41	6422.54	998.48	27.05	26.07	4.14	-2.69	-0.10	Matched[3695]
YKR095W	MLP1	"Myosin-like protein associated with the nuclear envelope, connects the nuclear pore complex with the nuclear interior; involved with Tel1p in telomere length control; involved with Pml1p and Pml39p in nuclear retention of unspliced mRNAs"	Verified	chr11:619447-625074	619447-625074	98.5%	241.47	234.25	196.74	190.07	111.45	143.37	237.86	193.41	127.41	0.88	0.79	0.53	-0.60	0.11	Matched[3696]
YKR095W-A	PCC1	"Proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1p, Gon7p, Bud32p, and Cgi121p; related to human cancer-testis antigens"	Verified	chr11:625506-625847	625506-625543,625619-625847	98.7%	197.34	155.60	159.39	129.03	185.96	98.67	176.47	144.21	142.31	0.65	0.59	0.59	-0.02	NaN	Covered/w/another[3697]
YKR096W		"Protein of unknown function that may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the nucleus and cytoplasm; predicted to contain a PINc (PilT N terminus) domain"	Verified	chr11:626435-630022	626435-630022	98.8%	87.16	92.24	91.96	97.60	110.57	124.96	89.70	94.78	117.77	0.33	0.38	0.49	0.31	0.94	Covered/w/another[3697]
YKR097W	PCK1	"Phosphoenolpyruvate carboxykinase, key enzyme in gluconeogenesis, catalyzes early reaction in carbohydrate biosynthesis, glucose represses transcription and accelerates mRNA degradation, regulated by Mcm1p and Cat8p, located in the cytosol"	Verified	chr11:630790-632439	630790-632439	98.9%	14.70	14.09	11.03	7.35	26.34	26.96	14.40	9.19	26.65	0.05	0.04	0.11	1.54	1.20	Frag<80[3698,3699]
YKR098C	UBP11	Ubiquitin-specific protease that cleaves ubiquitin from ubiquitinated proteins	Verified	chr11:632664-634817	632664-634817	99.2%	68.34	111.40	105.31	93.14	98.76	78.17	89.87	99.23	88.46	0.33	0.40	0.37	-0.17	0.12	Matched[3700]
YKR099W	BAS1	Myb-related transcription factor involved in regulating basal and induced expression of genes of the purine and histidine biosynthesis pathways; also involved in regulation of meiotic recombination at specific genes	Verified	chr11:635489-637924	635489-637924	98.6%	89.56	102.47	54.98	34.16	7.91	14.16	96.01	44.57	11.04	0.35	0.18	0.05	-2.01	-2.18	Matched[3701]
YKR100C	SKG1	Transmembrane protein with a role in cell wall polymer composition; localizes on the inner surface of the plasma membrane at the bud and in the daughter cell	Verified	chr11:638539-639606	638539-639606	99.1%	245.65	236.20	268.33	239.98	328.79	259.82	240.93	254.15	294.31	0.89	1.03	1.22	0.21	0.57	Matched[3702]
YKR101W	SIR1	"Protein involved in repression of transcription at the silent mating-type loci HML and HMR; recruitment to silent chromatin requires interactions with Orc1p and with Sir4p, through a common Sir1p domain; binds to centromeric chromatin"	Verified	chr11:640106-642142	640106-642142	98.7%	45.25	48.23	39.28	27.35	74.59	47.24	46.74	33.32	60.91	0.17	0.14	0.25	0.87	1.18	Matched[3703]
YKR102W	FLO10	"Lectin-like protein with similarity to Flo1p, thought to be involved in flocculation"	Verified	chr11:645994-649503	645994-649503	76.3%	24.65	32.49	17.18	14.94	12.32	14.19	28.57	16.06	13.26	0.11	0.07	0.05	-0.28	-0.20	
YKR103W	NFT1	Putative transporter of the multidrug resistance-associated protein (MRP) subfamily; adjacent ORFs YKR103W and YKR104W are merged in different strain backgrounds.	Verified	chr11:652718-656374	652718-656374	98.9%	17.69	28.75	14.37	10.78	12.99	10.23	23.22	12.58	11.61	0.09	0.05	0.05	-0.12	0.15	Overlap[3704]
YKR104W		Putative transporter of the multidrug resistance-associated protein (MRP) subfamily; contains a stop codon in S288C; adjacent ORFs YKR103W and YKR104W are merged in different strain backgrounds	Verified	chr11:656474-657394	656474-657394	98.9%	36.21	50.48	18.65	13.17	6.58	12.07	43.35	15.91	9.33	0.16	0.06	0.04	-0.77	0.32	
YKR105C		Putative transporter of the Major Facilitator Superfamily (MFS)	Uncharacterized	chr11:658354-660102	658354-660102	3.0%	37.94	18.97	0.00	37.94	0.00	0.00	28.46	18.97	0.00	0.11	0.08	0.00	-Inf	0.10	
YKR106W		Protein of unconfirmed function; displays a topology characteristic of the Major Facilitators Superfamily of membrane proteins; coding sequence 98% identical to that of YCL073C	Uncharacterized	chr11:661080-662927	661080-662927	7.4%	7.27	7.27	7.27	36.35	36.35	14.54	7.27	21.81	25.45	0.03	0.09	0.11	0.22	0.99	
YLL067W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps YLL067C"	Dubious	chr12:843-1325	843-1325	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YLL067C		Putative protein of unknown function with similarity to helicases	Uncharacterized	chr12:585-4301	585-3915,4015-4301	0.3%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	-0.19	
YLL066W-B		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Uncharacterized	chr12:5605-5775	5605-5775	23.1%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	NaN	
YLL066W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the uncharacterized ORF YLL066C"	Dubious	chr12:6486-6968	6486-6968	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YLL066C		Putative protein of unknown function with similarity to helicases; YLL066C is not an essential gene	Uncharacterized	chr12:6120-9836	6120-9450,9550-9836	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.32	
YLL065W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps chromosome XII telomeric element core sequences"	Dubious	chr12:11726-12076	11726-12076	1.8%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	-0.53	
YLL064C		Hypothetical protein	Uncharacterized	chr12:13083-13445	13083-13445	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.03	
YLL063C	AYT1	"Acetyltransferase; catalyzes trichothecene 3-O-acetylation, suggesting a possible role in trichothecene biosynthesis"	Verified	chr12:14648-16072	14648-16072	98.8%	45.46	53.98	50.43	44.04	36.22	26.28	49.72	47.23	31.25	0.18	0.19	0.13	-0.60	0.07	Matched[3707]
YLL062C	MHT1	"S-methylmethionine-homocysteine methyltransferase, functions along with Sam4p in the conversion of S-adenosylmethionine (AdoMet) to methionine to control the methionine/AdoMet ratio"	Verified	chr12:16639-17613	16639-17613	99.0%	30.04	43.50	29.00	27.97	23.82	15.54	36.77	28.49	19.68	0.14	0.12	0.08	-0.53	0.12	Covered/w/another[3708]
YLL061W	MMP1	"High-affinity S-methylmethionine permease, required for utilization of S-methylmethionine as a sulfur source; has similarity to S-adenosylmethionine permease Sam3p"	Verified	chr12:17956-19707	17956-19707	98.8%	36.38	64.10	48.51	50.24	40.43	43.31	50.24	49.38	41.87	0.19	0.20	0.17	-0.24	0.85	Covered/w/another[3708]
YLL060C	GTT2	"Glutathione S-transferase capable of homodimerization; functional overlap with Gtt2p, Grx1p, and Grx2p"	Verified	chr12:21138-21839	21138-21839	98.9%	123.93	116.72	103.75	66.29	144.10	67.73	120.32	85.02	105.91	0.44	0.35	0.44	0.32	-0.12	Covered/w/another[3708]
YLL059C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr12:22474-22980	22474-22980	98.7%	19.99	25.98	15.99	8.00	4.00	15.99	22.99	11.99	9.99	0.08	0.05	0.04	-0.26	0.30	Covered/w/another[3708]
YLL058W		"Putative protein of unknown function with similarity to Str2p, which is a cystathionine gamma-synthase important in sulfur metabolism; YLL058W is not an essential gene"	Uncharacterized	chr12:23569-25296	23569-25296	98.6%	62.22	104.49	79.24	79.83	106.25	102.72	83.35	79.54	104.49	0.31	0.32	0.43	0.39	0.66	Matched[3709]
YLL057C	JLP1	"Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase, involved in sulfonate catabolism for use as a sulfur source, contains sequence that closely resembles a J domain (typified by the E. coli DnaJ protein)"	Verified	chr12:25756-26994	25756-26994	98.9%	22.04	15.51	26.94	12.24	29.39	20.41	18.77	19.59	24.90	0.07	0.08	0.10	0.35	0.76	
YLL056C		"Putative protein of unknown function, transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in pleiotropic drug resistance (PDR) phenomenon; YLL056C is not an essential gene"	Uncharacterized	chr12:27409-28305	27409-28305	99.0%	38.29	59.68	51.80	27.03	64.19	27.03	48.99	39.41	45.61	0.18	0.16	0.19	0.21	0.46	Covered/w/another[3710]
YLL055W	YCT1	High-affinity cysteine-specific transporter with similarity to the Dal5p family of transporters; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; YCT1 is not an essential gene	Verified	chr12:30109-31704	30109-31704	99.0%	79.09	108.20	84.15	61.37	111.36	74.66	93.64	72.76	93.01	0.35	0.30	0.39	0.35	0.74	Covered/w/another[3710]
YLL054C		"Putative protein of unknown function with similarity to Pip2p, an oleate-specific transcriptional activator of peroxisome proliferation; YLL054C is not an essential gene"	Uncharacterized	chr12:32894-35203	32894-35203	99.0%	61.64	71.69	55.08	45.03	26.67	22.73	66.67	50.05	24.70	0.25	0.20	0.10	-1.02	-1.28	Covered/w/another[3711]
YLL053C		Putative protein; in the Sigma 1278B strain background YLL053C is contiguous with AQY2 which encodes an aquaporin	Uncharacterized	chr12:35502-35960	35502-35960	98.5%	55.30	33.18	44.24	33.18	70.78	28.76	44.24	38.71	49.77	0.16	0.16	0.21	0.36	0.99	Covered/w/another[3711]
YLL052C	AQY2	"Water channel that mediates the transport of water across cell membranes, only expressed in proliferating cells, controlled by osmotic signals, may be involved in freeze tolerance; disrupted by a stop codon in many S. cerevisiae strains"	Verified	chr12:35911-36360	35911-36360	98.4%	33.87	36.13	36.13	15.81	31.61	27.10	35.00	25.97	29.35	0.13	0.11	0.12	0.18	0.75	Covered/w/another[3711]
YLL051C	FRE6	Putative ferric reductase with similarity to Fre2p; expression induced by low iron levels	Verified	chr12:37332-39470	37332-39470	98.9%	137.12	96.93	125.77	96.93	75.18	53.43	117.02	111.35	64.30	0.43	0.45	0.27	-0.79	0.06	Matched[3713]
YLL050C	COF1	"Cofilin, promotes actin filament depolarization in a pH-dependent manner; binds both actin monomers and filaments and severs filaments , thought to be regulated by phosphorylation at SER4, ubiquitous and essential in eukaryotes"	Verified	chr12:39803-40413	39803-40220,40400-40413	98.7%	5304.15	5829.41	5632.44	5222.08	7946.85	5569.13	5566.78	5427.26	6757.99	20.55	22.03	28.00	0.32	-0.61	Matched[3714]
YLL049W	LDB18	Protein of unknown function; null mutant shows a reduced affinity for the alcian blue dye suggesting a decreased net negative charge of the cell surface	Verified	chr12:40665-41204	40665-41204	98.9%	183.48	161.01	161.01	121.69	252.75	108.59	172.24	141.35	180.67	0.64	0.57	0.75	0.35	-0.44	Matched[3715]
YLL048C	YBT1	Transporter of the ATP-binding cassette (ABC) family involved in bile acid transport; similar to mammalian bile transporters	Verified	chr12:41279-46264	41279-46264	99.0%	253.63	268.83	235.20	223.25	97.85	126.82	261.23	229.22	112.33	0.96	0.93	0.47	-1.03	-0.30	Frag>80[3715,3716,3717]
YLL047W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified gene RNP1"	Dubious	chr12:46671-47054	46671-47054	99.2%	26.26	18.38	10.50	2.63	36.76	70.90	22.32	6.56	53.83	0.08	0.03	0.22	3.04	0.08	Matched[3718]
YLL046C	RNP1	Ribonucleoprotein that contains two RNA recognition motifs (RRM)	Verified	chr12:46713-47462	46713-47462	99.4%	18.77	17.43	8.05	5.36	22.79	49.61	18.10	6.70	36.20	0.07	0.03	0.15	2.43	1.39	Matched[3718]
YLL044W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; transcription of both YLL044W and the overlapping gene RPL8B is reduced in the gcr1 null mutant"	Dubious	chr12:48215-48661	48215-48661	46.8%	6896.72	5048.36	5946.27	5081.79	907.46	740.30	5972.54	5514.03	823.88	22.05	22.38	3.41	-2.74	-0.17	Matched[3719]
YLL045C	RPL8B	"Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Ap and has similarity to rat L7a ribosomal protein; mutation results in decreased amounts of free 60S subunits"	Verified	chr12:47858-48628	47858-48628	46.0%	7716.10	5880.14	6351.12	5775.79	1167.57	786.84	6798.12	6063.45	977.20	25.10	24.61	4.05	-2.63	-2.50	Matched[3719]
YLL043W	FPS1	"Plasma membrane glycerol channel, member of the major intrinsic protein (MIP) family of channel proteins; involved in efflux of glycerol and in uptake of the trivalent metalloids arsenite and antimonite"	Verified	chr12:49937-51946	49937-51946	97.9%	316.64	330.87	332.39	314.61	254.12	190.59	323.75	323.50	222.36	1.20	1.31	0.92	-0.54	0.13	Matched[3721]
YLL042C	ATG10	"E2-like conjugating enzyme that mediates formation of the Atg12p-Atg5p conjugate, which is a critical step in autophagy"	Verified	chr12:52086-52589	52086-52589	99.0%	22.04	32.06	26.05	22.04	28.05	8.01	27.05	24.04	18.03	0.10	0.10	0.07	-0.42	-0.40	Matched[3722]
YLL041C	SDH2	"Iron-sulfur protein subunit of succinate dehydrogenase (Sdh1p, Sdh2p, Sdh3p, Sdh4p), which couples the oxidation of succinate to the transfer of electrons to ubiquinone"	Verified	chr12:53130-53930	53130-53930	99.0%	330.51	433.96	518.48	668.59	956.22	697.61	382.23	593.53	826.91	1.41	2.41	3.43	0.48	0.71	Matched[3723]
YLL040C	VPS13	"Protein of unknown function; heterooligomeric or homooligomeric complex; peripherally associated with membranes; homologous to human COH1; involved in sporulation, vacuolar protein sorting and protein-Golgi retention"	Verified	chr12:54210-63644	54210-63644	99.2%	88.92	126.97	89.14	89.24	76.74	139.58	107.95	89.19	108.16	0.40	0.36	0.45	0.28	0.74	Frag>80[3724,3725,3726,3727]
YLL039C	UBI4	"Ubiquitin, becomes conjugated to proteins, marking them for selective degradation via the ubiquitin-26S proteasome system; essential for the cellular stress response; encoded as a polyubiquitin precursor comprised of 5 head-to-tail repeats"	Verified	chr12:64061-65206	64061-65206	57.3%	575.60	875.58	793.35	904.51	15487.85	10861.75	725.59	848.93	13174.80	2.68	3.45	54.59	3.96	3.39	Frag>80[3727,3728,3729]
YLL038C	ENT4	"Protein of unknown function, contains an N-terminal epsin-like domain"	Verified	chr12:65774-66517	65774-66517	99.0%	84.22	95.08	67.92	74.71	35.32	55.69	89.65	71.31	45.50	0.33	0.29	0.19	-0.65	-0.83	Matched[3730]
YLL037W		Dubious open reading frame unlikely to encode a functional protein; overlaps 3' end of essential PRP19 gene encoding an RNA splicing factor	Dubious	chr12:66561-66941	66561-66941	99.1%	108.54	76.77	105.89	113.83	92.65	113.83	92.65	109.86	103.24	0.34	0.45	0.43	-0.09	0.47	
YLL036C	PRP19	"Splicing factor associated with the spliceosome; contains a U-box, a motif found in a class of ubiquitin ligases"	Verified	chr12:66744-68255	66744-68255	99.1%	147.46	148.13	150.13	138.12	109.43	122.11	147.79	144.12	115.77	0.55	0.59	0.48	-0.32	0.19	Matched[3731]
YLL035W	GRC3	"Protein of unknown function, required for cell growth and possibly involved in rRNA processing; mRNA is cell cycle regulated"	Verified	chr12:68579-70477	68579-70477	98.8%	76.71	66.06	53.81	38.89	13.85	12.79	71.39	46.35	13.32	0.26	0.19	0.06	-1.80	-0.64	Covered/w/another[3732]
YLL034C	RIX7	"Putative ATPase of the AAA family, required for export of pre-ribosomal large subunits from the nucleus; distributed between the nucleolus, nucleoplasm, and nuclear periphery depending on growth conditions"	Verified	chr12:70632-73145	70632-73145	99.1%	150.47	78.25	109.14	94.70	7.62	2.01	114.36	101.92	4.82	0.42	0.41	0.02	-4.40	-4.16	Covered/w/another[3732]
YLL033W		Putative protein of unknown function; YLL033W is not an essential gene but mutant is defective in spore formation; null mutant displays increased levels of spontaneous Rad52 foci	Uncharacterized	chr12:73408-74100	73408-74100	98.9%	72.95	62.74	42.31	45.23	24.80	27.72	67.84	43.77	26.26	0.25	0.18	0.11	-0.74	-0.08	Matched[3733]
YLL032C		"Protein of unknown function that may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YLL032C is not an essential gene"	Verified	chr12:74269-76746	74269-76746	99.2%	79.75	72.02	59.00	54.52	51.67	52.08	75.88	56.76	51.88	0.28	0.23	0.21	-0.13	0.23	Matched[3734]
YLL031C	GPI13	ER membrane localized phosphoryltransferase that adds phosphoethanolamine onto the third mannose residue of the glycosylphosphatidylinositol (GPI) anchor precursor; similar to human PIG-O protein	Verified	chr12:77151-80204	77151-80204	98.9%	184.37	173.78	153.92	178.74	107.91	115.52	179.07	166.33	111.71	0.66	0.68	0.46	-0.57	0.27	Matched[3735]
YLL030C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr12:80355-80696	80355-80696	98.9%	5.92	5.92	2.96	2.96	0.00	8.87	5.92	2.96	4.44	0.02	0.01	0.02	0.58	0.95	Overlap[3735]
YLL029W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YLL029W is not an essential gene but mutant is defective in spore formation	Uncharacterized	chr12:81460-83709	81460-83709	98.5%	260.75	248.57	246.32	253.08	592.78	616.69	254.66	249.70	604.74	0.94	1.01	2.51	1.28	1.66	Matched[3737]
YLL028W	TPO1	"Polyamine transporter that recognizes spermine, putrescine, and spermidine; catalyzes uptake of polyamines at alkaline pH and excretion at acidic pH; phosphorylation enhances activity and sorting to the plasma membrane"	Verified	chr12:84803-86563	84803-86563	98.8%	329.48	197.23	266.23	261.06	599.17	954.53	263.36	263.64	776.85	0.97	1.07	3.22	1.56	2.00	Matched[3738]
YLL027W	ISA1	"Mitochondrial matrix protein involved in biogenesis of the iron-sulfur (Fe/S) cluster of Fe/S proteins, isa1 deletion causes loss of mitochondrial DNA and respiratory deficiency; depletion reduces growth on nonfermentable carbon sources"	Verified	chr12:87402-88154	87402-88154	98.3%	270.09	421.34	302.50	232.28	256.58	167.45	345.71	267.39	212.02	1.28	1.09	0.88	-0.33	-0.41	Matched[3739]
YLL026W	HSP104	"Heat shock protein that cooperates with Ydj1p (Hsp40) and Ssa1p (Hsp70) to refold and reactivate previously denatured, aggregated proteins; responsive to stresses including: heat, ethanol, and sodium arsenite; involved in [PSI+] propagation"	Verified	chr12:88622-91348	88622-91348	98.7%	582.47	1399.13	854.57	1128.52	18967.75	16392.90	990.80	991.54	17680.33	3.66	4.02	73.26	4.16	3.53	Frag>80[3740,3741,3742]
YLL025W		Putative protein of unknown function; YLL025W is not an essential gene	Uncharacterized	chr12:94746-95120	94746-95120	47.7%	22.38	33.57	33.57	16.78	33.57	0.00	27.97	25.17	16.78	0.10	0.10	0.07	-0.58	1.05	Frag<80[3744,3745]
YLL024C	SSA2	"ATP binding protein involved in protein folding and vacuolar import of proteins; member of heat shock protein 70 (HSP70) family; associated with the chaperonin-containing T-complex; present in the cytoplasm, vacuolar membrane and cell wall"	Verified	chr12:95565-97484	95565-97484	26.7%	5483.04	3639.14	4577.64	4610.74	26620.80	20598.41	4561.09	4594.19	23609.61	16.84	18.65	97.82	2.36	1.63	Frag<80[3744,3745,3746,3747,3748,3749,3750,3751]
YLL023C		"Protein of unknown function; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum"	Verified	chr12:97996-98835	97996-98835	98.4%	302.37	417.28	394.30	416.07	886.56	759.56	359.82	405.18	823.06	1.33	1.64	3.41	1.02	1.29	Frag>80[3751,3752,3753]
YLL022C	HIF1	"Non-essential component of the HAT-B histone acetyltransferase complex (Hat1p-Hat2p-Hif1p), localized to the nucleus; has a role in telomeric silencing"	Verified	chr12:99043-100200	99043-100200	99.0%	142.21	92.48	113.42	115.16	48.86	29.66	117.34	114.29	39.26	0.43	0.46	0.16	-1.54	-1.08	Frag>80[3753,3754]
YLL021W	SPA2	"Component of the polarisome, which functions in actin cytoskeletal organization during polarized growth; acts as a scaffold for Mkk1p and Mpk1p cell wall integrity signaling components; potential Cdc28p substrate"	Verified	chr12:100946-105346	100946-105346	97.8%	222.04	167.69	177.45	164.67	50.17	77.34	194.87	171.06	63.76	0.72	0.69	0.26	-1.42	-0.70	Matched[3755]
YLL020C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene KNS1"	Dubious	chr12:105555-105860	105555-105860	98.6%	172.35	172.35	172.35	178.98	490.54	394.42	172.35	175.67	442.48	0.64	0.71	1.83	1.33	1.30	Covered/w/another[3756]
YLL019W-A		Dubious open reading frame unlikely to encode a protein; completely overlaps the verified gene KNS1	Dubious	chr12:106907-106999	106907-106999	98.9%	119.57	119.57	152.17	152.17	282.61	423.91	119.57	152.17	353.26	0.44	0.62	1.46	1.22	NaN	Covered/w/another[3756]
YLL019C	KNS1	"Nonessential putative protein kinase of unknown cellular role; member of the LAMMER family of protein kinases, which are serine/threonine kinases also capable of phosphorylating tyrosine residues"	Verified	chr12:105685-107898	105685-107898	98.9%	157.57	189.08	190.91	186.34	343.46	397.81	173.33	188.63	370.63	0.64	0.77	1.54	0.97	1.35	Covered/w/another[3756]
YLL018C-A	COX19	"Protein required for cytochrome c oxidase assembly, located in the cytosol and mitochondrial intermembrane space; putative copper metallochaperone that delivers copper to cytochrome c oxidase"	Verified	chr12:108675-108971	108675-108971	98.9%	125.99	166.86	160.05	125.99	146.42	173.67	146.42	143.02	160.05	0.54	0.58	0.66	0.16	0.80	Covered/w/another[3756]
YLL018C	DPS1	"Cytoplasmic aspartyl-tRNA synthetase, homodimeric enzyme that catalyzes the specific aspartylation of tRNA(Asp); class II aminoacyl tRNA synthetase; binding to its own mRNA may confer autoregulation"	Verified	chr12:109901-111574	109901-111574	99.0%	1114.20	1223.45	1099.11	1121.44	584.87	607.20	1168.83	1110.28	596.03	4.31	4.51	2.47	-0.90	-0.27	Frag>80[3757,3758,3759]
YLL015W	BPT1	"ABC type transmembrane transporter of MRP/CFTR family, found in vacuolar membrane, involved in the transport of unconjugated bilirubin and in heavy metal detoxification via glutathione conjugates, along with Ycf1p"	Verified	chr12:116431-121110	116431-121110	98.9%	102.86	96.38	97.89	85.14	84.71	80.82	99.62	91.52	82.76	0.37	0.37	0.34	-0.15	0.07	
YLL014W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; YLL014W is not an essential gene	Uncharacterized	chr12:121321-121647	121321-121647	99.1%	656.98	623.06	592.21	499.68	539.78	385.55	640.02	545.95	462.67	2.36	2.22	1.92	-0.24	-0.94	Covered/w/another[3762]
YLL013C	PUF3	"Protein of the mitochondrial outer surface, links the Arp2/3 complex with the mitochore during anterograde mitochondrial movement; also binds to and promotes degradation of mRNAs for select nuclear-encoded mitochondrial proteins"	Verified	chr12:122074-124713	122074-124713	98.5%	286.15	274.62	293.08	307.31	111.15	158.46	280.38	300.19	134.81	1.04	1.22	0.56	-1.15	-0.41	Covered/w/another[3762]
YLL012W	YEH1	"Steryl ester hydrolase, one of three gene products (Yeh1p, Yeh2p, Tgl1p) responsible for steryl ester hydrolase activity and involved in sterol homeostasis; localized to lipid particle membranes"	Verified	chr12:125533-127254	125533-127254	98.7%	50.02	87.68	45.90	26.48	25.30	25.30	68.85	36.19	25.30	0.25	0.15	0.10	-0.52	-0.25	Matched[3763]
YLL011W	SOF1	Essential protein required for biogenesis of 40S (small) ribosomal subunit; has similarity to the beta subunit of trimeric G-proteins and the splicing factor Prp4p	Verified	chr12:127522-128991	127522-128991	98.6%	178.61	146.19	127.58	121.37	14.48	19.31	162.40	124.47	16.90	0.60	0.51	0.07	-2.88	-3.65	Matched[3764]
YLL010C	PSR1	"Plasma membrane associated protein phosphatase involved in the general stress response; required along with binding partner Whi2p for full activation of STRE-mediated gene expression, possibly through dephosphorylation of Msn2p"	Verified	chr12:129329-130612	129329-130612	98.4%	175.75	196.33	207.42	154.37	202.67	153.58	186.04	180.89	178.12	0.69	0.73	0.74	-0.02	0.20	Matched[3765]
YLL009C	COX17	Copper metallochaperone that transfers copper to Sco1p and Cox11p for eventual delivery to cytochrome c oxidase	Verified	chr12:131204-131413	131204-131413	99.4%	747.01	742.22	713.49	703.91	1494.01	761.37	744.61	708.70	1127.69	2.75	2.88	4.67	0.67	0.13	Matched[3766]
YLL008W	DRS1	"Nucleolar DEAD-box protein required for ribosome assembly and function, including synthesis of 60S ribosomal subunits; constituent of 66S pre-ribosomal particles"	Verified	chr12:131728-133986	131728-133986	98.2%	254.23	127.56	133.42	100.97	19.38	6.31	190.89	117.20	12.85	0.70	0.48	0.05	-3.19	-3.07	Covered/w/another[3767]
YLL007C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YLL007C is not an essential gene	Uncharacterized	chr12:134301-136298	134301-136298	99.2%	67.63	53.49	51.48	51.98	48.95	42.90	60.56	51.73	45.92	0.22	0.21	0.19	-0.17	0.18	Covered/w/another[3767]
YLL006W-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr12:136344-136520	136344-136520	99.3%	5.69	22.75	0.00	5.69	0.00	5.69	14.22	2.84	2.84	0.05	0.01	0.01	0.00	NaN	Overlap[3767]
YLL006W	MMM1	"Mitochondrial outer membrane protein, component of the Mdm10-Mdm12-Mmm1 complex involved in import and assembly of outer membrane beta-barrel proteins"	Verified	chr12:136585-137865	136585-137865	98.9%	80.49	109.69	72.60	108.11	149.93	189.39	95.09	90.35	169.66	0.35	0.37	0.70	0.91	1.13	Covered[3768]
YLL005C	SPO75	"Meiosis-specific protein of unknown function, required for spore wall formation during sporulation; dispensable for both nuclear divisions during meiosis"	Verified	chr12:137939-140545	137939-140545	99.0%	59.25	79.39	61.19	48.02	61.96	38.34	69.32	54.61	50.15	0.26	0.22	0.21	-0.12	0.15	Overlap[3768]
YLL004W	ORC3	"Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing"	Verified	chr12:141072-142922	141072-142922	99.0%	79.70	67.14	63.87	49.67	54.59	30.57	73.42	56.77	42.58	0.27	0.23	0.18	-0.42	-0.36	Matched[3769]
YLL003W	SFI1	"Centrin (Cdc31p)-binding protein required for spindle pole body (SPB) duplication, localizes to the half-bridge of the SPB, required for progression through G(2)-M transition, has similarity to Xenopus laevis XCAP-C"	Verified	chr12:143200-146040	143200-146040	98.7%	77.02	81.65	57.76	52.41	60.26	45.28	79.33	55.09	52.77	0.29	0.22	0.22	-0.06	0.05	Covered/w/another[3770]
YLL002W	RTT109	"Histone acetyltransferase critical for cell survival in the presence of DNA damage during S phase, acetylates H3-K56; plays a role in regulation of Ty1 transposition"	Verified	chr12:146290-147600	146290-147600	98.8%	82.64	88.05	82.64	75.69	45.57	24.72	85.34	79.17	35.14	0.32	0.32	0.15	-1.17	-1.14	Covered/w/another[3770]
YLL001W	DNM1	"Dynamin-related GTPase required for mitochondrial fission and the maintenance of mitochondrial morphology, assembles on the cytoplasmic face of mitochondrial tubules at sites at which division will occur; also participates in endocytosis"	Verified	chr12:147889-150162	147889-150162	98.8%	135.72	151.74	167.76	154.41	193.12	138.83	143.73	161.08	165.98	0.53	0.65	0.69	0.04	0.23	Frag>80[3771,3772]
YLR001C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YLR001C is not an essential gene"	Uncharacterized	chr12:151388-153976	151388-153976	99.1%	84.60	137.62	103.70	93.57	123.98	113.45	111.11	98.64	118.71	0.41	0.40	0.49	0.27	0.79	Matched[3773]
YLR002C	NOC3	Protein that forms a nuclear complex with Noc2p that binds to 66S ribosomal precursors to mediate their intranuclear transport; also binds to chromatin to promote the association of DNA replication factors and replication initiation	Verified	chr12:154342-156333	154342-156333	99.1%	176.75	86.60	108.89	96.23	14.18	5.57	131.68	102.56	9.88	0.49	0.42	0.04	-3.38	-4.56	Matched[3774]
YLR003C		Putative protein of unknown function that may participate in DNA replication; green fluorescent protein (GFP)-fusion protein is localized to the nucleus; YLR003C is not an essential gene	Uncharacterized	chr12:156854-157729	156854-157729	99.3%	271.33	134.51	174.75	141.41	28.74	17.25	202.92	158.08	22.99	0.75	0.64	0.10	-2.78	-2.64	Matched[3775]
YLR004C	THI73	Putative plasma membrane permease proposed to be involved in carboxylic acid uptake and repressed by thiamine; substrate of Dbf2p/Mob1p kinase; transcription is altered if mitochondrial dysfunction occurs	Verified	chr12:157933-159504	157933-159504	98.8%	37.34	37.34	19.96	12.87	17.38	14.16	37.34	16.42	15.77	0.14	0.07	0.07	-0.06	0.08	
YLR005W	SSL1	"Component of the core form of RNA polymerase transcription factor TFIIH, which has both protein kinase and DNA-dependent ATPase/helicase activities and is essential for transcription and nucleotide excision repair; interacts with Tfb4p"	Verified	chr12:160048-161433	160048-161433	98.6%	144.83	152.87	130.93	113.37	188.71	151.41	148.85	122.15	170.06	0.55	0.50	0.70	0.48	0.64	Covered/w/another[3776]
YLR006C	SSK1	"Cytoplasmic response regulator, part of a two-component signal transducer that mediates osmosensing via a phosphorelay mechanism; dephosphorylated form is degraded by the ubiquitin-proteasome system; potential Cdc28p substrate"	Verified	chr12:161754-163892	161754-163892	98.8%	122.98	134.80	144.26	122.51	203.39	193.93	128.89	133.39	198.66	0.48	0.54	0.82	0.57	0.88	Covered/w/another[3776]
YLR007W	NSE1	Essential subunit of the Mms21-Smc5-Smc6 complex; nuclear protein required for DNA repair and growth	Verified	chr12:164391-165401	164391-165401	98.6%	108.31	139.40	85.25	88.25	103.30	47.14	123.86	86.75	75.22	0.46	0.35	0.31	-0.21	-0.99	Matched[3777]
YLR008C	PAM18	"J-protein co-chaperone of the mitochondrial import motor associated with the presequence translocase, with Ssc1p, Tim44p, Mge1p, and Pam16p; stimulates ATPase activity of Ssc1p to drive mitochondrial import; activity is inhibited by Pam16p"	Verified	chr12:165576-166082	165576-166082	99.2%	429.57	316.21	375.87	342.06	186.94	161.09	372.89	358.97	174.01	1.38	1.46	0.72	-1.04	-0.90	Matched[3778]
YLR009W	RLP24	"Essential protein with similarity to Rpl24Ap and Rpl24Bp, associated with pre-60S ribosomal subunits and required for ribosomal large subunit biogenesis"	Verified	chr12:166536-167135	166536-167135	98.1%	599.58	293.84	354.99	280.25	27.18	6.79	446.71	317.62	16.99	1.65	1.29	0.07	-4.22	-3.36	Matched[3779]
YLR010C	TEN1	Protein that regulates telomeric length; protects telomeric ends in a complex with Cdc13p and Stn1p	Verified	chr12:167319-167801	167319-167801	99.4%	49.99	66.66	68.74	35.41	91.65	49.99	58.32	52.07	70.82	0.22	0.21	0.29	0.44	-0.27	Matched[3780]
YLR011W	LOT6	FMN-dependent NAD(P)H:quinone reductase that may be involved in quinone detoxification; gene expression increases in cultures shifted to a lower temperature	Verified	chr12:169102-169677	169102-169677	98.4%	89.94	72.31	100.52	72.31	91.70	44.09	81.12	86.41	67.90	0.30	0.35	0.28	-0.35	0.20	Matched[3781]
YLR012C		Putative protein of unknown function; YLR012C is not an essential gene	Uncharacterized	chr12:169981-170280	169981-170280	99.3%	3.36	3.36	0.00	3.36	10.07	16.79	3.36	1.68	13.43	0.01	0.01	0.06	3.00	2.00	Matched[3782]
YLR013W	GAT3	Protein containing GATA family zinc finger motifs	Verified	chr12:171338-171763	171338-171763	98.5%	2.38	0.00	0.00	0.00	0.00	2.38	1.19	0.00	1.19	0.00	0.00	0.00	Inf	0.11	
YLR014C	PPR1	"Zinc finger transcription factor containing a Zn(2)-Cys(6) binuclear cluster domain, positively regulates transcription of genes involved in uracil biosynthesis; activity may be modulated by interaction with Tup1p"	Verified	chr12:172267-174981	172267-174981	99.1%	41.64	28.63	20.82	19.33	10.78	7.81	35.14	20.08	9.30	0.13	0.08	0.04	-1.11	-0.84	Frag<80[3783]
YLR015W	BRE2	"Subunit of the COMPASS (Set1C) complex, which methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres; involved in telomere maintenance; similar to trithorax-group protein ASH2L"	Verified	chr12:175226-176743	175226-176743	98.4%	109.13	83.69	81.01	65.61	53.56	32.81	96.41	73.31	43.18	0.36	0.30	0.18	-0.76	-0.69	Covered/w/another[3784]
YLR016C	PML1	"Subunit of the RES complex, which is required for nuclear retention of unspliced pre-mRNAs; acts in the same pathway as Pml39p and Mlp1p"	Verified	chr12:176801-177415	176801-177415	99.1%	178.84	146.02	137.82	129.61	137.82	100.08	162.43	133.72	118.95	0.60	0.54	0.49	-0.17	0.10	Covered/w/another[3784]
YLR017W	MEU1	"Methylthioadenosine phosphorylase (MTAP), catalyzes the initial step in the methionine salvage pathway; affects polyamine biosynthesis through regulation of ornithine decarboxylase (Spe1p) activity; regulates ADH2 gene expression"	Verified	chr12:177607-178620	177607-178620	98.8%	291.54	180.71	193.69	177.72	78.88	57.91	236.13	185.71	68.39	0.87	0.75	0.28	-1.44	-1.22	Covered/w/another[3784]
YLR018C	POM34	Integral membrane protein of the nuclear pore; has an important role in maintaining the architecture of the pore complex	Verified	chr12:178706-179605	178706-179605	98.9%	220.12	194.29	203.28	172.95	195.41	131.40	207.21	188.11	163.41	0.76	0.76	0.68	-0.20	-0.33	Covered/w/another[3784]
YLR019W	PSR2	"Functionally redundant Psr1p homolog, a plasma membrane phosphatase involved in the general stress response; required with Psr1p and Whi2p for full activation of STRE-mediated gene expression, possibly through dephosphorylation of Msn2p"	Verified	chr12:180287-181480	180287-181480	98.6%	251.45	267.59	269.29	282.88	279.48	250.60	259.52	276.09	265.04	0.96	1.12	1.10	-0.06	0.33	Matched[3785]
YLR020C	YEH2	"Steryl ester hydrolase, catalyzes steryl ester hydrolysis at the plasma membrane; involved in sterol metabolism"	Verified	chr12:181788-183404	181788-183404	99.2%	192.71	200.20	140.33	135.34	91.06	63.61	196.46	137.83	77.33	0.73	0.56	0.32	-0.83	-0.54	Matched[3786]
YLR021W	IRC25	Chaperone component involved in 20S proteasome assembly; forms a heterodimer with Poc4p; IRC25 is a non-essential gene; null mutant displays increased levels of spontaneous Rad52 foci	Verified	chr12:183622-184161	183622-184161	98.5%	146.61	129.69	148.48	95.86	135.33	75.18	138.15	122.17	105.25	0.51	0.50	0.44	-0.22	-0.11	Matched[3787]
YLR022C	SDO1	Essential protein involved in 60S ribosome maturation; ortholog of the human protein (SBDS) responsible for autosomal recessive Shwachman-Bodian-Diamond Syndrome; highly conserved across archae and eukaryotes	Verified	chr12:184173-184925	184173-184925	99.5%	233.68	197.63	214.99	133.53	161.58	109.50	215.66	174.26	135.54	0.80	0.71	0.56	-0.36	-0.40	Matched[3787]
YLR023C	IZH3	"Membrane protein involved in zinc metabolism, member of the four-protein IZH family, expression induced by zinc deficiency; deletion reduces sensitivity to elevated zinc and shortens lag phase, overexpression reduces Zap1p activity"	Verified	chr12:185497-187128	185497-187128	99.0%	201.86	237.15	205.57	182.66	123.84	102.17	219.50	194.12	113.00	0.81	0.79	0.47	-0.78	-0.27	Matched[3789]
YLR024C	UBR2	Cytoplasmic ubiquitin-protein ligase (E3)	Verified	chr12:187664-193282	187664-193282	99.2%	40.54	39.10	32.11	29.60	52.38	56.14	39.82	30.85	54.26	0.15	0.13	0.22	0.81	0.40	Matched[3790]
YLR025W	SNF7	One of four subunits of the endosomal sorting complex required for transport III (ESCRT-III); involved in the sorting of transmembrane proteins into the multivesicular body (MVB) pathway; recruited from the cytoplasm to endosomal membranes	Verified	chr12:194453-195175	194453-195175	98.0%	465.66	506.59	434.62	450.14	883.35	733.77	486.12	442.38	808.56	1.79	1.80	3.35	0.87	0.85	Matched[3791]
YLR026C	SED5	"cis-Golgi t-SNARE syntaxin required for vesicular transport between the ER and the Golgi complex, binds at least 9 SNARE proteins"	Verified	chr12:195451-196473	195451-196473	99.1%	178.49	180.46	210.04	203.14	171.58	131.15	179.47	206.59	151.37	0.66	0.84	0.63	-0.45	-0.15	Matched[3792]
YLR027C	AAT2	"Cytosolic aspartate aminotransferase, involved in nitrogen metabolism; localizes to peroxisomes in oleate-grown cells"	Verified	chr12:196830-198086	196830-198086	98.6%	1137.02	1463.84	1103.12	1098.28	806.16	747.25	1300.43	1100.70	776.71	4.80	4.47	3.22	-0.50	-0.14	Matched[3793]
YLR028C	ADE16	"Enzyme of 'de novo' purine biosynthesis containing both 5-aminoimidazole-4-carboxamide ribonucleotide transformylase and inosine monophosphate cyclohydrolase activities, isozyme of Ade17p; ade16 ade17 mutants require adenine and histidine"	Verified	chr12:199541-201316	199541-201316	99.0%	637.21	710.60	689.55	673.05	1509.39	1380.81	673.90	681.30	1445.10	2.49	2.77	5.99	1.08	1.47	Matched[3795]
YLR029C	RPL15A	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl15Bp and has similarity to rat L15 ribosomal protein; binds to 5.8 S rRNA"	Verified	chr12:201977-202591	201977-202591	60.9%	15161.13	12102.75	12844.66	9404.65	4243.30	2679.42	13631.93	11124.65	3461.36	50.32	45.16	14.34	-1.68	-2.79	Matched[3796]
YLR030W		Putative protein of unknown function	Uncharacterized	chr12:203291-204082	203291-204082	98.5%	51.29	87.19	44.88	25.65	47.44	38.47	69.24	35.26	42.96	0.26	0.14	0.18	0.28	2.30	Matched[3797]
YLR031W		Putative protein of unknown function	Uncharacterized	chr12:204226-204786	204226-204786	98.9%	46.87	48.67	36.05	27.04	91.94	34.25	47.77	31.55	63.10	0.18	0.13	0.26	1.00	2.33	Covered/w/another[3797]
YLR032W	RAD5	"Single-stranded DNA-dependent ATPase, involved in postreplication repair; contains RING finger domain"	Verified	chr12:204992-208501	204992-208501	98.7%	62.08	56.01	53.70	45.62	36.38	39.27	59.05	49.66	37.82	0.22	0.20	0.16	-0.39	-0.02	Matched[3798]
YLR033W	RSC58	"Component of the RSC chromatin remodeling complex; RSC functions in transcriptional regulation and elongation, chromosome stability, and establishing sister chromatid cohesion; involved in telomere maintenance58KDa subunit"	Verified	chr12:208762-210270	208762-210270	98.7%	218.19	190.67	196.04	177.91	153.74	130.92	204.43	186.98	142.33	0.75	0.76	0.59	-0.39	-0.14	Matched[3799]
YLR034C	SMF3	Putative divalent metal ion transporter involved in iron homeostasis; transcriptionally regulated by metal ions; member of the Nramp family of metal transport proteins	Verified	chr12:210513-211934	210513-211934	98.9%	347.82	275.27	317.23	236.14	384.80	297.31	311.54	276.69	341.06	1.15	1.12	1.41	0.30	0.77	Frag>80[3800]
YLR035C	MLH2	Protein involved in the mismatch repair of certain frameshift intermediates and involved in meiotic recombination; forms a complex with Mlh1p	Verified	chr12:212370-214457	212370-214457	99.1%	59.90	64.25	41.54	42.99	73.43	60.87	62.07	42.27	67.15	0.23	0.17	0.28	0.67	0.96	Matched[3801]
YLR036C		Putative protein of unknown function predicted to have transmembrane domains; interacts with HSP90 by yeast two-hybrid analysis; YLR036C is not an essential protein	Uncharacterized	chr12:221522-222133	221522-222133	99.3%	144.76	129.95	133.24	121.73	185.88	113.50	137.35	127.48	149.69	0.51	0.52	0.62	0.23	-0.25	Matched[3803]
YLR037C	DAN2	"Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth"	Verified	chr12:222686-223060	222686-223060	49.2%	48.74	70.40	21.66	27.08	70.40	37.91	59.57	24.37	54.15	0.22	0.10	0.22	1.15	1.03	Frag<80[3804]
YLR038C	COX12	"Subunit VIb of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; required for assembly of cytochrome c oxidase but not required for activity after assembly; phosphorylated"	Verified	chr12:224922-225173	224922-225173	99.2%	692.23	636.21	736.25	744.25	1340.45	880.29	664.22	740.25	1110.37	2.45	3.00	4.60	0.58	0.31	Matched[3806]
YLR039C	RIC1	Protein involved in retrograde transport to the cis-Golgi network; forms heterodimer with Rgp1p that acts as a GTP exchange factor for Ypt6p; involved in transcription of rRNA and ribosomal protein genes	Verified	chr12:225427-228597	225427-228597	99.3%	96.25	79.09	83.22	76.87	71.15	67.02	87.67	80.05	69.09	0.32	0.32	0.29	-0.21	0.35	Matched[3807]
YLR041W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YLR040C"	Dubious	chr12:229378-229698	229378-229698	98.6%	78.96	53.69	82.12	56.85	50.53	37.90	66.32	69.48	44.22	0.24	0.28	0.18	-0.65	-0.21	Covered/w/another[3808]
YLR040C		Putative protein of unknown function; localizes to the cell wall; predicted to be a GPI-attached protein; upregulated by Mcm1p-Alpha1p transcription factor; partially overlaps the dubious ORF YLR041W; YLR040C is not essential	Uncharacterized	chr12:228909-229583	228909-229583	98.3%	98.00	48.24	82.92	76.89	75.38	69.35	73.12	79.90	72.37	0.27	0.32	0.30	-0.14	-0.07	Covered/w/another[3808]
YLR042C		Protein of unknown function; localizes to the cytoplasm; YLL042C is not an essential gene	Uncharacterized	chr12:229967-230452	229967-230452	98.4%	144.21	106.59	173.47	131.67	54.34	35.53	125.40	152.57	44.94	0.46	0.62	0.19	-1.76	-2.27	Covered/w/another[3808]
YLR043C	TRX1	"Cytoplasmic thioredoxin isoenzyme of the thioredoxin system which protects cells against oxidative and reductive stress, forms LMA1 complex with Pbi2p, acts as a cofactor for Tsa1p, required for ER-Golgi transport and vacuole inheritance"	Verified	chr12:231703-232014	231703-232014	98.7%	3191.13	3519.00	3093.74	3152.17	3077.51	2162.05	3355.07	3122.95	2619.78	12.39	12.68	10.85	-0.25	-0.60	Matched[3809]
YLR044C	PDC1	"Major of three pyruvate decarboxylase isozymes, key enzyme in alcoholic fermentation, decarboxylates pyruvate to acetaldehyde; subject to glucose-, ethanol-, and autoregulation; involved in amino acid catabolism"	Verified	chr12:232391-234082	232391-234082	83.9%	22876.87	13959.49	20799.01	17382.42	12519.29	9649.46	18418.18	19090.72	11084.38	67.99	77.49	45.93	-0.78	-1.92	Matched[3810]
YLR045C	STU2	Microtubule-associated protein (MAP) of the XMAP215/Dis1 family; regulates microtubule dynamics during spindle orientation and metaphase chromosome alignment; interacts with spindle pole body component Spc72p	Verified	chr12:235038-237704	235038-237704	99.2%	170.40	156.05	153.78	143.95	127.33	124.31	163.22	148.87	125.82	0.60	0.60	0.52	-0.24	0.11	Covered/w/another[3811]
YLR046C		"Putative membrane protein, transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in multidrug resistance"	Uncharacterized	chr12:238002-238814	238002-238814	99.0%	114.31	157.80	131.70	93.19	130.46	108.10	136.05	112.45	119.28	0.50	0.46	0.49	0.09	0.49	Covered/w/another[3811]
YLR047C	FRE8	"Protein with sequence similarity to iron/copper reductases, involved in iron homeostasis; deletion mutant has iron deficiency/accumulation growth defects; expression increased in the absence of copper-responsive transcription factor Mac1p"	Verified	chr12:239348-241408	239348-241408	98.9%	51.50	72.60	51.50	38.26	37.77	77.01	62.05	44.88	57.39	0.23	0.18	0.24	0.35	1.15	Covered/w/another[3811]
YLR048W	RPS0B	"Protein component of the small (40S) ribosomal subunit, nearly identical to Rps0Ap; required for maturation of 18S rRNA along with Rps0Ap; deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal"	Verified	chr12:242233-243350	242233-242322,242682-243350	81.2%	6303.33	5025.14	5442.01	4436.33	676.40	434.71	5664.23	4939.17	555.56	20.91	20.05	2.30	-3.15	-1.81	Matched[3812]
YLR049C		Putative protein of unknown function	Uncharacterized	chr12:243887-245173	243887-245173	99.2%	176.31	172.39	184.93	122.24	246.83	141.05	174.35	153.58	193.94	0.64	0.62	0.80	0.34	0.27	Covered/w/another[3813]
YLR050C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; YLR050C is not an essential gene	Uncharacterized	chr12:245588-246073	245588-246073	98.8%	256.16	306.14	249.91	216.59	264.49	172.86	281.15	233.25	218.67	1.04	0.95	0.91	-0.09	0.03	Covered/w/another[3813]
YLR051C	FCF2	Essential nucleolar protein involved in the early steps of 35S rRNA processing; interacts with Faf1p; member of a transcriptionally co-regulated set of genes called the RRB regulon	Verified	chr12:246325-246978	246325-246978	99.5%	308.76	227.34	178.19	182.80	64.52	30.72	268.05	180.49	47.62	0.99	0.73	0.20	-1.92	-2.49	Covered/w/another[3813]
YLR052W	IES3	Subunit of the INO80 chromatin remodeling complex	Verified	chr12:247202-247954	247202-247954	98.8%	209.68	176.08	154.57	155.91	122.31	104.84	192.88	155.24	113.58	0.71	0.63	0.47	-0.45	-0.08	Matched[3814]
YLR053C		Putative protein of unknown function	Uncharacterized	chr12:248101-248427	248101-248427	99.4%	46.15	46.15	30.77	24.62	70.77	67.69	46.15	27.69	69.23	0.17	0.11	0.29	1.32	1.77	Matched[3815]
YLR054C	OSW2	Protein of unknown function proposed to be involved in the assembly of the spore wall	Uncharacterized	chr12:248718-250979	248718-250861,250949-250979	99.2%	3.24	5.56	5.56	3.24	16.68	12.05	4.40	4.40	14.36	0.02	0.02	0.06	1.71	1.40	Frag<80[3815]
YLR055C	SPT8	"Subunit of the SAGA transcriptional regulatory complex but not present in SAGA-like complex SLIK/SALSA, required for SAGA-mediated inhibition at some promoters"	Verified	chr12:251273-253081	251273-253081	98.4%	105.62	113.48	121.35	88.20	92.13	94.94	109.55	104.77	93.54	0.40	0.43	0.39	-0.16	0.21	Matched[3816]
YLR056W	ERG3	"C-5 sterol desaturase, catalyzes the introduction of a C-5(6) double bond into episterol, a precursor in ergosterol biosynthesis; mutants are viable, but cannot grow on non-fermentable carbon sources"	Verified	chr12:253862-254959	253862-254959	98.9%	1157.19	2273.88	994.25	832.22	186.88	88.38	1715.54	913.23	137.63	6.33	3.71	0.57	-2.73	-2.52	Matched[3817]
YLR057W		Putative protein of unknown function; YLR050C is not an essential gene	Uncharacterized	chr12:255307-257856	255307-257856	98.8%	90.08	90.08	69.05	55.16	34.92	33.33	90.08	62.10	34.13	0.33	0.25	0.14	-0.86	-0.63	Matched[3818]
YLR058C	SHM2	"Cytosolic serine hydroxymethyltransferase, involved in one-carbon metabolism"	Verified	chr12:257993-259402	257993-259402	98.7%	5143.68	3410.91	5624.48	3814.10	884.71	462.84	4277.30	4719.29	673.77	15.79	19.16	2.79	-2.81	-3.02	Covered/w/another[3819]
YLR059C	REX2	"RNA exonuclease, required for U4 snRNA maturation; functions redundantly with Rnh70p in 5.8S rRNA maturation, and with Rnh70p and Rex3p in processing of U5 snRNA and RNase P RNA; member of RNase D family of exonucleases"	Verified	chr12:259739-260548	259739-260548	98.6%	470.91	454.63	398.27	390.75	298.07	286.80	462.77	394.51	292.44	1.71	1.60	1.21	-0.43	-0.12	Covered/w/another[3819]
YLR060W	FRS1	"Beta subunit of cytoplasmic phenylalanyl-tRNA synthetase, forms a tetramer with Frs2p to generate active enzyme; sequence is evolutionarily distant from mitochondrial phenylalanyl-tRNA synthetase (Msf1p), but substrate binding is similar"	Verified	chr12:260980-262767	260980-262767	98.9%	1056.83	840.15	1003.65	881.45	363.78	452.04	948.49	942.55	407.91	3.50	3.83	1.69	-1.21	-0.32	Matched[3820]
YLR061W	RPL22A	"Protein component of the large (60S) ribosomal subunit, has similarity to Rpl22Bp and to rat L22 ribosomal protein"	Verified	chr12:263195-263949	263195-263206,263596-263949	98.7%	9354.24	7931.73	8128.23	6691.88	1848.71	1544.28	8642.99	7410.06	1696.49	31.91	30.08	7.03	-2.13	-3.01	Matched[3821]
YLR062C	BUD28	"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; 98% of ORF overlaps the verified gene RPL22A; diploid mutant displays a weak budding pattern phenotype in a systematic assay"	Dubious	chr12:263578-263955	263578-263955	98.7%	9262.12	7862.35	7985.70	6593.97	1823.46	1515.08	8562.23	7289.83	1669.27	31.61	29.59	6.92	-2.13	-0.88	Matched[3821]
YLR063W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YLR063W is not an essential gene	Uncharacterized	chr12:264158-265255	264158-265255	98.9%	65.40	73.69	38.69	38.69	11.97	26.71	69.55	38.69	19.34	0.26	0.16	0.08	-1.00	-1.71	Matched[3822]
YLR064W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; YLR064W is not an essential gene	Uncharacterized	chr12:265457-266278	265457-266278	99.3%	307.65	333.38	246.36	268.42	872.68	669.22	320.51	257.39	770.95	1.18	1.04	3.19	1.58	0.95	Matched[3823]
YLR065C		Putative protein of unknown function; YLR065C is not an essential gene	Uncharacterized	chr12:266374-266919	266374-266919	99.2%	660.82	623.90	537.15	544.53	278.73	153.21	642.36	540.84	215.97	2.37	2.20	0.89	-1.32	-1.04	Matched[3824]
YLR066W	SPC3	"Subunit of signal peptidase complex (Spc1p, Spc2p, Spc3p, Sec11p), which catalyzes cleavage of N-terminal signal sequences of proteins targeted to the secretory pathway; homologous to mammalian SPC22/23"	Verified	chr12:267170-267724	267170-267724	98.9%	513.62	566.44	473.55	477.20	435.30	293.24	540.03	475.37	364.27	1.99	1.93	1.51	-0.38	-0.41	Matched[3825]
YLR067C	PET309	"Specific translational activator for the COX1 mRNA, also influences stability of intron-containing COX1 primary transcripts; located in the mitochondrial inner membrane"	Verified	chr12:267814-270711	267814-270711	99.3%	54.54	55.23	49.67	44.81	40.99	31.61	54.88	47.24	36.30	0.20	0.19	0.15	-0.38	-0.40	Matched[3826]
YLR068W	FYV7	"Protein of unknown function, required for survival upon exposure to K1 killer toxin; involved in processing the 35S rRNA primary transcript to generate the 20S and 27SA2 pre-rRNA transcripts"	Verified	chr12:271009-271464	271009-271464	97.8%	177.20	197.38	143.55	116.64	20.19	6.73	187.29	130.09	13.46	0.69	0.53	0.06	-3.27	-1.95	Covered/w/another[3827]
YLR069C	MEF1	Mitochondrial elongation factor involved in translational elongation	Verified	chr12:271631-273916	271631-273916	99.1%	223.82	241.04	265.32	269.74	256.93	211.46	232.43	267.53	234.20	0.86	1.09	0.97	-0.19	0.20	Covered/w/another[3827]
YLR070C	XYL2	"Xylitol dehydrogenase, converts xylitol to D-xylulose in the endogenous xylose utilization pathway"	Verified	chr12:274142-275212	274142-275212	99.0%	21.70	24.53	30.19	33.03	157.58	98.13	23.12	31.61	127.86	0.09	0.13	0.53	2.02	2.48	Covered/w/another[3827]
YLR071C	RGR1	"Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; required for glucose repression, HO repression, RME1 repression and sporulation"	Verified	chr12:275379-278627	275379-278627	99.2%	107.30	111.64	95.51	92.10	55.20	74.12	109.47	93.81	64.66	0.40	0.38	0.27	-0.54	-0.12	Covered/w/another[3827]
YLR072W		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; YLR072W is not an esssential gene	Uncharacterized	chr12:278863-280944	278863-280944	98.6%	103.81	117.94	114.04	89.19	122.81	104.29	110.87	101.61	113.55	0.41	0.41	0.47	0.16	0.21	Matched[3828]
YLR073C		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to endosomes; YLR073C is not an esssential gene	Uncharacterized	chr12:281020-281622	281020-281622	98.7%	144.47	120.95	100.79	62.15	18.48	21.84	132.71	81.47	20.16	0.49	0.33	0.08	-2.01	-0.95	Matched[3829]
YLR074C	BUD20	Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern	Verified	chr12:281957-282457	281957-282457	99.1%	443.25	274.01	308.26	193.42	102.75	68.50	358.63	250.84	85.63	1.32	1.02	0.35	-1.55	-1.10	Matched[3830]
YLR075W	RPL10	"Protein component of the large (60S) ribosomal subunit, responsible for joining the 40S and 60S subunits; regulates translation initiation; has similarity to rat L10 ribosomal protein and to members of the QM gene family"	Verified	chr12:282928-283593	282928-283593	98.5%	19100.95	15299.05	16784.76	13801.14	5833.14	4315.43	17200.00	15292.95	5074.29	63.49	62.08	21.02	-1.59	-1.91	Matched[3832]
YLR076C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the essential gene RPL10 which encodes the ribosomal protein L10"	Dubious	chr12:283186-283608	283186-283608	98.4%	21012.62	16705.79	18352.09	14905.67	6513.12	4539.96	18859.20	16628.88	5526.54	69.62	67.50	22.90	-1.59	-0.82	Matched[3832]
YLR077W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr12:283873-285624	283873-285624	98.6%	117.55	140.14	124.50	114.66	132.61	82.81	128.85	119.58	107.71	0.48	0.49	0.45	-0.15	0.06	Matched[3833]
YLR078C	BOS1	"v-SNARE (vesicle specific SNAP receptor), localized to the endoplasmic reticulum membrane and necessary for vesicular transport from the ER to the Golgi"	Verified	chr12:285737-286560	285737-286468,286558-286560	99.2%	233.20	259.26	289.44	204.39	389.57	190.67	246.23	246.91	290.12	0.91	1.00	1.20	0.23	-0.04	Matched[3834]
YLR079W	SIC1	"Inhibitor of Cdc28-Clb kinase complexes that controls G1/S phase transition, preventing premature S phase and ensuring genomic integrity; phosphorylation targets Sic1p for SCF(CDC4)-dependent turnover; functional homolog of mammalian Kip1"	Verified	chr12:286821-287675	286821-287675	98.3%	304.52	354.48	324.74	279.54	609.04	431.80	329.50	302.14	520.42	1.22	1.23	2.16	0.78	0.98	Matched[3835]
YLR080W	EMP46	"Integral membrane component of endoplasmic reticulum-derived COPII-coated vesicles, which function in ER to Golgi transport"	Verified	chr12:287917-289251	287917-289251	98.4%	59.38	72.32	70.80	69.27	275.57	137.79	65.85	70.04	206.68	0.24	0.28	0.86	1.56	1.33	Frag>80[3836,3837]
YLR081W	GAL2	"Galactose permease, required for utilization of galactose; also able to transport glucose"	Verified	chr12:290213-291937	290213-291937	96.7%	19.79	16.19	16.19	23.99	14.39	19.19	17.99	20.09	16.79	0.07	0.08	0.07	-0.26	0.45	Frag<80[3838]
YLR082C	SRL2	Protein of unknown function; overexpression suppresses the lethality caused by a rad53 null mutation	Verified	chr12:292395-293573	292395-293573	99.3%	92.22	111.00	81.12	98.20	121.25	80.26	101.61	89.66	100.76	0.38	0.36	0.42	0.17	0.33	Matched[3839]
YLR083C	EMP70	"Protein whose 24kDa cleavage product is found in endosome-enriched membrane fractions, predicted to be a transmembrane protein"	Verified	chr12:294092-296095	294092-296095	98.9%	463.87	361.91	386.64	374.53	66.12	49.97	412.89	380.58	58.05	1.52	1.54	0.24	-2.71	-1.89	Frag>80[3840,3841]
YLR084C	RAX2	N-glycosylated protein involved in the maintenance of bud site selection during bipolar budding; localization requires Rax1p	Verified	chr12:296590-300252	296590-300252	99.0%	104.80	76.67	81.91	60.68	49.64	46.89	90.74	71.29	48.26	0.33	0.29	0.20	-0.56	-0.18	Matched[3842]
YLR085C	ARP6	"Actin-related protein that binds nucleosomes; a component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A"	Verified	chr12:300674-301990	300674-301990	99.0%	87.42	98.92	70.55	89.72	109.66	70.55	93.17	80.13	90.10	0.34	0.33	0.37	0.17	0.11	Matched[3843]
YLR086W	SMC4	"Subunit of the condensin complex, which reorganizes chromosomes during cell division, forms a stable complex with Smc2p that has ATP-hydrolyzing and DNA-binding activity and promotes knotting of circular DNA; potential Cdc28p substrate"	Verified	chr12:302244-306500	302244-306500	98.5%	132.86	131.19	92.07	90.88	72.27	77.76	132.03	91.48	75.02	0.49	0.37	0.31	-0.29	0.19	Matched[3844]
YLR087C	CSF1	"Protein required for fermentation at low temperature; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr12:306856-315732	306856-315732	99.1%	33.29	33.74	26.47	24.66	12.95	26.81	33.52	25.56	19.88	0.12	0.10	0.08	-0.36	-0.07	Frag<80[3845]
YLR088W	GAA1	"Subunit of the GPI (glycosylphosphatidylinositol):protein transamidase complex, removes the GPI-anchoring signal and attaches GPI to proteins in the ER"	Verified	chr12:316108-317952	316108-317952	99.0%	224.00	233.31	198.26	185.66	169.23	119.94	228.65	191.96	144.58	0.84	0.78	0.60	-0.41	-0.16	Matched[3846]
YLR089C	ALT1	"Putative alanine transaminase (glutamic pyruvic transaminase); the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr12:318238-320016	318238-320016	98.8%	480.52	781.35	602.22	650.55	430.48	349.73	630.94	626.39	390.11	2.33	2.54	1.62	-0.68	-0.41	Matched[3847]
YLR090W	XDJ1	"Putative chaperone, homolog of E. coli DnaJ, closely related to Ydj1p; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr12:320702-322081	320702-322081	98.4%	135.48	159.77	161.98	138.42	189.96	156.09	147.63	150.20	173.03	0.54	0.61	0.72	0.20	0.40	Matched[3848]
YLR091W		"Protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YLR091W is not an esssential gene"	Uncharacterized	chr12:322298-323179	322298-323179	98.8%	98.71	88.38	91.83	76.90	73.46	51.65	93.55	84.37	62.56	0.35	0.34	0.26	-0.43	0.10	Covered/w/another[3849]
YLR092W	SUL2	"High affinity sulfate permease; sulfate uptake is mediated by specific sulfate transporters Sul1p and Sul2p, which control the concentration of endogenous activated sulfate intermediates"	Verified	chr12:323545-326226	323545-326226	98.9%	38.83	51.65	24.51	28.28	54.67	44.11	45.24	26.39	49.39	0.17	0.11	0.20	0.90	0.26	Covered/w/another[3849]
YLR093C	NYV1	v-SNARE component of the vacuolar SNARE complex involved in vesicle fusion; inhibits ATP-dependent Ca(2+) transport activity of Pmc1p in the vacuolar membrane	Verified	chr12:326514-327416	326514-327259,327401-327416	99.2%	476.16	506.59	539.65	544.94	834.61	522.46	491.38	542.30	678.53	1.81	2.20	2.81	0.32	0.11	Frag>80[3850,3851]
YLR094C	GIS3	Protein of unknown function	Verified	chr12:327731-329239	327731-329239	98.7%	97.34	130.23	98.68	74.52	82.57	76.53	113.79	86.60	79.55	0.42	0.35	0.33	-0.12	0.35	Matched[3852]
YLR095C	IOC2	"Member of a complex (Isw1b) with Isw1p and Ioc4p that exhibits nucleosome-stimulated ATPase activity and acts within coding regions to coordinate transcription elongation with termination and processing, contains a PHD finger motif"	Verified	chr12:329678-332116	329678-332116	98.5%	186.57	181.57	170.33	142.01	137.01	145.34	184.07	156.17	141.18	0.68	0.63	0.58	-0.15	0.34	Matched[3853]
YLR096W	KIN2	Serine/threonine protein kinase involved in regulation of exocytosis; localizes to the cytoplasmic face of the plasma membrane; closely related to Kin1p	Verified	chr12:332591-336034	332591-336034	98.8%	156.35	156.64	132.54	135.48	76.12	95.51	156.49	134.01	85.82	0.58	0.54	0.36	-0.64	-0.13	Covered/w/another[3854]
YLR097C	HRT3	"Putative SCF-ubiquitin ligase F-box protein, based on both genetic and physical interactions and sequence similarity; identified in association with Cdc53p, Skp1p and Ubi4 in large and small-scale studies"	Verified	chr12:336232-337266	336232-337266	99.3%	163.41	172.17	161.47	108.94	285.97	161.47	167.79	135.20	223.72	0.62	0.55	0.93	0.73	0.48	Covered/w/another[3854]
YLR098C	CHA4	"DNA binding transcriptional activator, mediates serine/threonine activation of the catabolic L-serine (L-threonine) deaminase (CHA1); Zinc-finger protein with Zn[2]-Cys[6] fungal-type binuclear cluster domain"	Verified	chr12:337528-339474	337528-339474	99.0%	61.19	71.04	50.82	49.26	74.67	49.26	66.11	50.04	61.97	0.24	0.20	0.26	0.31	0.92	Matched[3855]
YLR099C	ICT1	"Protein of unknown function, null mutation leads to an increase in sensitivity to Calcofluor white; expression of the gene is induced in the presence of isooctane"	Verified	chr12:339745-340929	339745-340929	98.7%	119.71	224.02	131.68	82.94	105.17	66.69	171.86	107.31	85.93	0.63	0.44	0.36	-0.32	0.18	Matched[3856]
YLR099W-A		Putative protein of unknown function	Uncharacterized	chr12:341326-341589	341326-341589	98.2%	270.10	177.49	169.77	192.93	316.40	208.36	223.79	181.35	262.38	0.83	0.74	1.09	0.53	0.36	Covered/w/another[3857]
YLR100W	ERG27	"3-keto sterol reductase, catalyzes the last of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis; mutants are sterol auxotrophs"	Verified	chr12:341811-342854	341811-342854	98.8%	412.81	408.93	383.74	338.19	320.75	183.15	410.87	360.96	251.95	1.52	1.47	1.04	-0.52	-0.05	Covered/w/another[3857]
YLR101C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified, essential ORF ERG27/YLR100W"	Dubious	chr12:342567-342962	342567-342962	98.8%	439.57	442.13	426.79	337.34	416.57	242.79	440.85	382.07	329.68	1.63	1.55	1.37	-0.21	-0.30	Covered/w/another[3857]
YLR102C	APC9	"Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition"	Verified	chr12:342971-343768	342971-343768	99.3%	83.28	108.51	80.75	82.01	243.52	165.29	95.89	81.38	204.41	0.35	0.33	0.85	1.33	0.78	Covered/w/another[3857]
YLR103C	CDC45	"DNA replication initiation factor; recruited to MCM pre-RC complexes at replication origins; promotes release of MCM from Mcm10p, recruits elongation machinery; mutants in human homolog may cause velocardiofacial and DiGeorge syndromes"	Verified	chr12:343990-345942	343990-345942	99.3%	71.16	66.52	63.94	47.44	22.17	15.47	68.84	55.69	18.82	0.25	0.23	0.08	-1.57	-1.11	Matched[3858]
YLR104W		Putative protein of unknown function; mutant is deficient in amounts of cell wall mannosylphosphate	Uncharacterized	chr12:346586-346981	346586-346981	98.6%	281.75	204.91	253.58	215.15	373.96	230.52	243.33	234.36	302.24	0.90	0.95	1.25	0.37	0.04	Matched[3860]
YLR105C	SEN2	"Subunit of the tRNA splicing endonuclease, which is composed of Sen2p, Sen15p, Sen34p, and Sen54p; Sen2p contains the active site for tRNA 5' splice site cleavage and has similarity to Sen34p and to Archaeal tRNA splicing endonuclease"	Verified	chr12:347048-348181	347048-348181	99.2%	135.16	110.26	118.26	87.14	80.03	52.46	122.71	102.70	66.24	0.45	0.42	0.27	-0.63	-0.97	Matched[3861]
YLR106C	MDN1	"Huge dynein-related AAA-type ATPase (midasin), forms extended pre-60S particle with the Rix1 complex (Rix1p-Ipi1p-Ipi3p), may mediate ATP-dependent remodeling of 60S subunits and subsequent export from nucleoplasm to cytoplasm"	Verified	chr12:349007-363739	349007-363739	99.2%	147.30	81.39	108.49	104.52	37.03	48.12	114.35	106.51	42.58	0.42	0.43	0.18	-1.32	-0.82	Frag<80[3862,3863,3864,3865,3866]
YLR107W	REX3	RNA exonuclease; required for maturation of the RNA component of RNase MRP; functions redundantly with Rnh70p and Rex2p in processing of U5 snRNA and RNase P RNA; member of RNase D family of exonucleases	Verified	chr12:364117-365331	364117-365331	98.9%	123.94	127.27	105.64	103.15	139.75	94.00	125.61	104.39	116.87	0.46	0.42	0.48	0.16	0.09	Matched[3867]
YLR108C		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; YLR108C is not an esssential gene	Uncharacterized	chr12:366668-368125	366668-368125	99.0%	31.17	13.85	122.61	54.72	95.60	59.57	22.51	88.67	77.58	0.08	0.36	0.32	-0.19	0.41	Matched[3869]
YLR109W	AHP1	"Thiol-specific peroxiredoxin, reduces hydroperoxides to protect against oxidative damage; function in vivo requires covalent conjugation to Urm1p"	Verified	chr12:368782-369312	368782-369312	98.8%	8536.98	3675.59	8931.61	4834.70	29048.22	18534.28	6106.28	6883.15	23791.25	22.54	27.94	98.58	1.79	0.94	Matched[3870]
YLR110C	CCW12	"Cell wall mannoprotein, mutants are defective in mating and agglutination, expression is downregulated by alpha-factor"	Verified	chr12:369698-370099	369698-370099	93.8%	45819.39	49750.86	45864.48	40434.18	31130.76	20479.72	47785.12	43149.33	25805.24	176.40	175.15	106.92	-0.74	-2.31	Matched[3871]
YLR111W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr12:370392-370724	370392-370724	98.6%	9.14	24.37	6.09	3.05	15.23	18.28	16.76	4.57	16.76	0.06	0.02	0.07	1.87	0.27	Matched[3872]
YLR112W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr12:370792-371211	370792-371211	98.8%	57.84	67.48	53.02	53.02	147.00	62.66	62.66	53.02	104.83	0.23	0.22	0.43	0.98	0.45	Matched[3872]
YLR113W	HOG1	Mitogen-activated protein kinase involved in osmoregulation via three independent osmosensors; mediates the recruitment and activation of RNA Pol II at Hot1p-dependent promoters; localization regulated by Ptp2p and Ptp3p	Verified	chr12:371621-372928	371621-372928	98.8%	690.98	652.29	616.69	534.67	660.80	487.47	671.63	575.68	574.14	2.48	2.34	2.38	-0.00	0.61	Matched[3873]
YLR114C	AVL9	Conserved protein involved in exocytic transport from the Golgi; mutation is synthetically lethal with apl2 vps1 double mutation; member of a protein superfamily with orthologs in diverse organisms	Verified	chr12:374945-377239	374945-377239	96.6%	229.98	226.82	212.84	208.33	119.95	114.09	228.40	210.59	117.02	0.84	0.85	0.48	-0.85	-0.16	Matched[3875]
YLR115W	CFT2	"Subunit of the mRNA cleavage and polyadenlylation factor (CPF); required for pre-mRNA cleavage, polyadenylation and poly(A) site recognition, 43% similarity with the mammalian CPSF-100 protein."	Verified	chr12:377986-380565	377986-380565	98.8%	99.62	108.64	87.07	77.26	71.77	71.38	104.13	82.17	71.58	0.38	0.33	0.30	-0.20	0.26	Covered/w/another[3876]
YLR116W	MSL5	"Component of the commitment complex, which defines the first step in the splicing pathway; essential protein that interacts with Mud2p and Prp40p, forming a bridge between the intron ends; also involved in nuclear retention of pre-mRNA"	Verified	chr12:380823-382253	380823-382253	98.6%	152.31	126.80	135.31	114.05	120.43	119.01	139.56	124.68	119.72	0.52	0.51	0.50	-0.06	0.58	Covered/w/another[3876]
YLR117C	CLF1	"Essential splicesome assembly factor; contains multiple tetratricopeptide repeat (TPR) protein-binding motifs and interacts specifically with many spliceosome components, may serve as a scaffold during splicesome assembly"	Verified	chr12:382472-384535	382472-384535	99.4%	103.83	93.59	82.38	85.30	105.78	89.69	98.71	83.84	97.73	0.36	0.34	0.40	0.22	0.31	Covered/w/another[3876]
YLR118C		Acyl-protein thioesterase responsible for depalmitoylation of Gpa1p; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and nucleus and is induced in response to the DNA-damaging agent MMS	Verified	chr12:384726-385409	384726-385409	99.0%	320.33	349.86	296.72	327.72	710.05	519.62	335.10	312.22	614.84	1.24	1.27	2.55	0.98	0.82	Frag>80[3877,3878]
YLR119W	SRN2	"Component of the ESCRT-I complex, which is involved in ubiquitin-dependent sorting of proteins into the endosome; suppressor of rna1-1 mutation; may be involved in RNA export from nucleus"	Verified	chr12:385535-386176	385535-386176	98.8%	138.76	121.42	102.50	111.96	321.68	260.18	130.09	107.23	290.93	0.48	0.44	1.21	1.44	1.08	Matched[3879]
YLR120C	YPS1	"Aspartic protease, attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor"	Verified	chr12:386512-388221	386512-388221	98.7%	197.86	239.92	222.74	188.38	377.94	327.00	218.89	205.56	352.47	0.81	0.83	1.46	0.78	1.08	
YLR120W-A		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data; partially overlaps the verified ORF YLR121C"	Dubious	chr12:388673-388774	388673-388774	97.6%	90.41	90.41	40.18	30.14	30.14	10.05	90.41	35.16	20.09	0.33	0.14	0.08	-0.81	NaN	Covered/w/another[3880]
YLR121C	YPS3	"Aspartic protease, attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor"	Verified	chr12:388745-390271	388745-390271	98.3%	103.23	114.55	91.24	86.58	165.16	102.56	108.89	88.91	133.86	0.40	0.36	0.55	0.59	-0.33	Covered/w/another[3880]
YLR122C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF YLR123C"	Dubious	chr12:390955-391332	390955-391332	98.6%	56.37	56.37	37.58	40.26	24.16	16.11	56.37	38.92	20.13	0.21	0.16	0.08	-0.95	-0.67	Covered/w/another[3880]
YLR123C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF YLR122C; contains characteristic aminoacyl-tRNA motif"	Dubious	chr12:391079-391408	391079-391408	98.4%	52.37	61.61	36.97	24.64	24.64	12.32	56.99	30.80	18.48	0.21	0.13	0.08	-0.74	-0.58	Covered/w/another[3880]
YLR124W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr12:391601-391945	391601-391945	98.8%	14.67	44.01	20.54	23.47	35.21	14.67	29.34	22.00	24.94	0.11	0.09	0.10	0.18	-0.30	Covered/w/another[3880]
YLR125W		Putative protein of unknown function; mutant has decreased Ty3 transposition; YLR125W is not an essential gene	Uncharacterized	chr12:393485-393895	393485-393895	98.2%	27.26	47.09	52.04	4.96	54.52	49.57	37.17	28.50	52.04	0.14	0.12	0.22	0.87	0.43	Covered[3881]
YLR126C		Putative protein of unknown function with similarity to glutamine amidotransferase proteins; has Aft1p-binding motif in the promoter; may be involved in copper and iron homeostasis; YLR126C is not an essential protein	Uncharacterized	chr12:394766-395521	394766-395521	99.5%	228.75	126.34	164.91	129.00	136.98	62.51	177.55	146.96	99.75	0.66	0.60	0.41	-0.56	-0.50	Covered/w/another[3882]
YLR127C	APC2	"Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; similar to cullin Cdc53p"	Verified	chr12:395759-398320	395759-398320	99.2%	64.93	87.35	52.33	52.33	55.09	50.76	76.14	52.33	52.92	0.28	0.21	0.22	0.02	0.20	Covered/w/another[3882]
YLR128W	DCN1	Putative Nedd8 ligase; binds Nedd8; involved in cullin neddylation; not essential; similar to C.elegans DCN-1; contains UBA-like ubiquitin-binding domain and a DUF298 domain	Verified	chr12:398531-399434	398531-398533,398628-399434	98.8%	80.00	75.00	61.25	80.00	76.25	71.25	77.50	70.62	73.75	0.29	0.29	0.31	0.06	0.80	Covered/w/another[3883]
YLR129W	DIP2	"Nucleolar protein, specifically associated with the U3 snoRNA, part of the large ribonucleoprotein complex known as the small subunit (SSU) processome, required for 18S rRNA biogenesis, part of the active pre-rRNA processing complex"	Verified	chr12:399658-402489	399658-402489	98.7%	227.85	143.44	131.99	117.32	17.53	6.44	185.64	124.66	11.98	0.69	0.51	0.05	-3.38	-3.09	Covered/w/another[3883]
YLR130C	ZRT2	Low-affinity zinc transporter of the plasma membrane; transcription is induced under low-zinc conditions by the Zap1p transcription factor	Verified	chr12:402795-404063	402795-404063	98.8%	331.78	317.43	248.04	215.34	130.80	66.99	324.60	231.69	98.90	1.20	0.94	0.41	-1.23	-1.00	Covered/w/another[3883]
YLR131C	ACE2	"Transcription factor that activates expression of early G1-specific genes, localizes to daughter cell nuclei after cytokinesis and delays G1 progression in daughters, localization is regulated by phosphorylation; potential Cdc28p substrate"	Verified	chr12:404511-406823	404511-406823	98.9%	144.66	133.30	139.42	111.45	158.65	152.09	138.98	125.43	155.37	0.51	0.51	0.64	0.31	1.06	Covered/w/another[3884]
YLR132C		Protein of unknown function; green fluorescent protein (GFP)-tagged protein localizes to mitochondria and nucleus; YLR132C is an essential gene	Uncharacterized	chr12:407284-408156	407284-408156	98.9%	48.63	49.79	54.42	56.74	177.17	105.37	49.21	55.58	141.27	0.18	0.23	0.59	1.35	1.31	Covered/w/another[3884]
YLR133W	CKI1	"Choline kinase, catalyzes the first step in the CDP-choline pathway phosphatidylcholine synthesis (Kennedy pathway); mRNA expression is regulated by inositol and choline, enzyme activity is stimulated by phosphorylation by protein kinase"	Verified	chr12:408446-410194	408446-410194	98.7%	115.30	117.04	113.56	121.10	178.46	222.49	116.17	117.33	200.47	0.43	0.48	0.83	0.77	1.04	Matched[3885]
YLR134W	PDC5	"Minor isoform of pyruvate decarboxylase, key enzyme in alcoholic fermentation, decarboxylates pyruvate to acetaldehyde, regulation is glucose- and ethanol-dependent, repressed by thiamine, involved in amino acid catabolism"	Verified	chr12:410724-412415	410724-412415	81.1%	75.77	70.67	71.40	53.18	53.91	33.51	73.22	62.29	43.71	0.27	0.25	0.18	-0.51	-0.44	Matched[3886]
YLR135W	SLX4	"Subunit of a complex, with Slx1p, that hydrolyzes 5' branches from duplex DNA in response to stalled or converging replication forks; function overlaps with that of Sgs1p-Top3p"	Verified	chr12:413282-415528	413282-415528	98.7%	67.21	62.25	45.56	46.91	54.13	52.78	64.73	46.24	53.45	0.24	0.19	0.22	0.21	0.31	Covered/w/another[3887]
YLR136C	TIS11	mRNA-binding protein expressed during iron starvation; binds to a sequence element in the 3'-untranslated regions of specific mRNAs to mediate their degradation; involved in iron homeostasis	Verified	chr12:415802-416659	415802-416659	98.9%	134.29	70.68	126.04	97.77	120.15	98.95	102.48	111.91	109.55	0.38	0.45	0.45	-0.03	0.65	Covered/w/another[3887]
YLR137W		Putative protein of unknown function	Uncharacterized	chr12:417007-418110	417007-418110	98.4%	62.56	63.48	73.61	48.76	182.17	107.65	63.02	61.18	144.91	0.23	0.25	0.60	1.24	1.54	Matched[3888]
YLR138W	NHA1	Na+/H+ antiporter involved in sodium and potassium efflux through the plasma membrane; required for alkali cation tolerance at acidic pH	Verified	chr12:418438-421395	418438-421395	98.4%	210.26	160.10	202.70	172.46	152.88	161.81	185.18	187.58	157.35	0.68	0.76	0.65	-0.25	0.22	Matched[3889]
YLR139C	SLS1	Mitochondrial membrane protein required for assembly of respiratory-chain enzyme complexes III and IV; coordinates expression of mitochondrially-encoded genes; may facilitate delivery of mRNA to membrane-bound translation machinery	Verified	chr12:421543-423474	421543-423474	98.5%	83.03	98.27	94.06	85.66	47.29	63.06	90.65	89.86	55.18	0.33	0.36	0.23	-0.70	0.07	Covered/w/another[3890]
YLR140W		Dubious open reading frame unlikely to encode a functional protein; overlaps essential RRN5 gene which encodes a member of the UAF transcription factor involved in transcription of rDNA by RNA polymerase I	Dubious	chr12:423475-423801	423475-423801	98.2%	46.70	84.06	77.83	84.06	71.60	59.15	65.38	80.94	65.38	0.24	0.33	0.27	-0.31	0.49	Covered/w/another[3890]
YLR141W	RRN5	"Protein involved in transcription of rDNA by RNA polymerase I; transcription factor, member of UAF (upstream activation factor) family along with Rrn9p and Rrn10p"	Verified	chr12:423684-424775	423684-424775	97.1%	63.16	78.24	73.52	53.73	72.58	40.53	70.70	63.63	56.56	0.26	0.26	0.23	-0.17	0.11	Covered/w/another[3890]
YLR142W	PUT1	"Proline oxidase, nuclear-encoded mitochondrial protein involved in utilization of proline as sole nitrogen source; PUT1 transcription is induced by Put3p in the presence of proline and the absence of a preferred nitrogen source"	Verified	chr12:425187-426617	425187-426617	98.9%	31.79	20.49	32.49	24.02	273.38	283.27	26.14	28.26	278.32	0.10	0.11	1.15	3.30	3.33	Frag>80[3891,3892]
YLR143W		Putative protein of unknown function; green fluorescent protein (GFP)-tagged protein localizes to the cytoplasm; YLR143W is not an essential gene	Uncharacterized	chr12:427330-429387	427330-429387	98.9%	78.14	68.80	69.78	52.58	46.19	46.19	73.47	61.18	46.19	0.27	0.25	0.19	-0.41	-0.07	Covered/w/another[3893]
YLR144C	ACF2	"Intracellular beta-1,3-endoglucanase, expression is induced during sporulation; may have a role in cortical actin cytoskeleton assembly"	Verified	chr12:429678-432017	429678-432017	98.9%	89.84	77.31	73.43	79.47	117.91	100.64	83.58	76.45	109.28	0.31	0.31	0.45	0.52	0.68	Covered/w/another[3893]
YLR145W	RMP1	"Subunit of RNase MRP, which processes pre-rRNA and has a role in cell cycle-regulated degradation of daughter cell-specific mRNAs; unlike most subunits, not shared between RNase MRP and nuclear RNase P"	Verified	chr12:432169-432774	432169-432774	98.4%	129.19	117.44	127.51	98.99	144.29	82.21	123.31	113.25	113.25	0.46	0.46	0.47	0.00	0.13	Covered/w/another[3893]
YLR146C	SPE4	"Spermine synthase, required for the biosynthesis of spermine and also involved in biosynthesis of pantothenic acid"	Verified	chr12:432824-433726	432824-433726	99.1%	191.15	145.32	158.73	149.79	51.42	20.12	168.23	154.26	35.77	0.62	0.63	0.15	-2.11	-1.55	Covered/w/another[3893]
YLR146W-A		Putative protein of unknown function	Uncharacterized	chr12:433871-434059	433871-434059	98.8%	224.90	176.71	171.35	208.84	240.96	101.74	200.80	190.09	171.35	0.74	0.77	0.71	-0.15	NaN	Covered/w/another[3893]
YLR147C	SMD3	"Core Sm protein Sm D3; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm D3"	Verified	chr12:434159-434464	434159-434464	99.2%	171.29	128.47	167.99	177.88	200.93	102.11	149.88	172.93	151.52	0.55	0.70	0.63	-0.19	-0.61	Covered/w/another[3893]
YLR148W	PEP3	"Component of CORVET tethering complex; vacuolar peripheral membrane protein that promotes vesicular docking/fusion reactions in conjunction with SNARE proteins, required for vacuolar biogenesis"	Verified	chr12:434642-437398	434642-437398	99.0%	93.03	90.83	83.14	82.78	120.50	99.62	91.93	82.96	110.06	0.34	0.34	0.46	0.41	0.55	Covered/w/another[3893]
YLR149C		Putative protein of unknown function; YLR149C is not an essential gene	Uncharacterized	chr12:437632-439824	437632-439824	99.1%	38.65	56.13	68.10	99.38	377.29	386.95	47.39	83.74	382.12	0.17	0.34	1.58	2.19	2.12	Matched[3894]
YLR149C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr12:440371-440457	440371-440457	98.9%	3767.44	3255.81	3697.67	3441.86	1430.23	1511.63	3511.63	3569.77	1470.93	12.96	14.49	6.09	-1.28	-0.17	Matched[3895]
YLR150W	STM1	Protein that binds G4 quadruplex and purine motif triplex nucleic acid; acts with Cdc13p to maintain telomere structure; interacts with ribosomes and subtelomeric Y' DNA; multicopy suppressor of tom1 and pop2 mutations	Verified	chr12:440468-441289	440468-441289	98.3%	7486.85	6666.39	7051.25	6548.83	2889.55	2832.63	7076.62	6800.04	2861.09	26.12	27.60	11.85	-1.25	-1.39	Frag>80[3895,3896,3897,3898]
YLR151C	PCD1	"Peroxisomal nudix pyrophosphatase with specificity for coenzyme A and CoA derivatives, may function to remove potentially toxic oxidized CoA disulfide from peroxisomes to maintain the capacity for beta-oxidation of fatty acids"	Verified	chr12:441716-442738	441716-442738	99.5%	95.33	109.09	115.97	134.64	332.17	224.07	102.21	125.30	278.12	0.38	0.51	1.15	1.15	0.96	Frag>80[3897,3898,3899]
YLR152C		Putative protein of unknown function; YLR152C is not an essential gene	Uncharacterized	chr12:442959-444689	442959-444689	98.9%	67.16	153.60	76.51	63.07	269.23	212.00	110.38	69.79	240.61	0.41	0.28	1.00	1.79	1.90	Matched[3900]
YLR153C	ACS2	"Acetyl-coA synthetase isoform which, along with Acs1p, is the nuclear source of acetyl-coA for histone acetylation; mutants affect global transcription; required for growth on glucose; expressed under anaerobic conditions"	Verified	chr12:445525-447576	445525-447576	98.9%	761.54	815.26	734.92	631.41	272.08	223.78	788.40	683.17	247.93	2.91	2.77	1.03	-1.46	-0.83	Matched[3901]
YLR154C	RNH203	"Ribonuclease H2 subunit, required for RNase H2 activity"	Verified	chr12:447983-448315	447983-448315	99.0%	227.53	279.11	209.33	215.40	285.17	206.30	253.32	212.36	245.73	0.94	0.86	1.02	0.21	0.03	Matched[3902]
YLR154W-A		Dubious open reading frame unlikely to encode a protein; encoded within the the 25S rRNA gene on the opposite strand	Dubious	chr12:452439-452624	452439-452624	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YLR154W-B		Dubious open reading frame unlikely to encode a protein; encoded within the the 25S rRNA gene on the opposite strand	Dubious	chr12:454393-454557	454393-454557	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YLR154W-C	TAR1	"Mitochondrial protein of unknown function, overexpression suppresses an rpo41 mutation affecting mitochondrial RNA polymerase; encoded within the 25S rRNA gene on the opposite strand"	Verified	chr12:454697-455071	454697-455071	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YLR154W-E		Dubious open reading frame unlikely to encode a protein; encoded within the the 35S rRNA gene on the opposite strand	Dubious	chr12:455434-455637	455434-455637	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YLR154W-F		Dubious open reading frame unlikely to encode a protein; encoded within the the 35S rRNA gene on the opposite strand	Dubious	chr12:455884-456024	455884-456024	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YLR154C-G		Putative protein of unknown function identified by fungal homology comparisons and RT-PCR; this ORF is contained within RDN25-2 and RDN37-2	Uncharacterized	chr12:462523-462672	462523-462672	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YLR154C-H		Putative protein of unknown function identified by fungal homology comparisons and RT-PCR; this ORF partially overlaps RND5-2	Uncharacterized	chr12:468828-468959	468828-468959	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YLR155C	ASP3-1	"Cell-wall L-asparaginase II, involved in asparagine catabolism; expression is induced during nitrogen starvation; four copies of ASP3 are present in the genome reference strain S288C"	Verified	chr12:469318-470406	469318-470406	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.40	
YLR156W		Putative protein of unknown function; exhibits a two-hybrid interaction with Jsn1p in a large-scale analysis	Uncharacterized	chr12:472114-472458	472114-472458	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.49	
YLR156C-A		Putative protein of unknown function identified by fungal homology comparisons and RT-PCR; this ORF partially overlaps RND5-3	Uncharacterized	chr12:472480-472611	472480-472611	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YLR157C	ASP3-2	"Cell-wall L-asparaginase II, involved in asparagine catabolism; expression is induced during nitrogen starvation; four copies of ASP3 are present in the genome reference strain S288C"	Verified	chr12:472970-474058	472970-474058	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.41	
YLR157W-D		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr12:475765-475977	475765-475977	10.0%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	NaN	
YLR157W-E		"Putative protein of unknown function identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching; partially overlaps a Ty1 element"	Uncharacterized	chr12:481874-482038	481874-482038	14.0%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	NaN	
YLR157C-C		Putative protein of unknown function identified by fungal homology comparisons and RT-PCR; this ORF partially overlaps RND5-4	Uncharacterized	chr12:482060-482191	482060-482191	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YLR158C	ASP3-3	"Cell-wall L-asparaginase II, involved in asparagine catabolism; expression is induced during nitrogen starvation; four copies of ASP3 are present in the genome reference strain S288C"	Verified	chr12:482550-483638	482550-483638	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.39	
YLR159W		"Putative protein of unknown function; YLR156W, YLR159W, and YLR161W are three identical open reading frames encoded near the ribosomal DNA region of chromosome 12"	Uncharacterized	chr12:485346-485690	485346-485690	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.48	
YLR159C-A		Putative protein of unknown function identified by fungal homology comparisons and RT-PCR; this ORF partially overlaps RND5-5	Uncharacterized	chr12:485712-485843	485712-485843	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YLR160C	ASP3-4	"Cell-wall L-asparaginase II, involved in asparagine catabolism; expression is induced during nitrogen starvation; four copies of ASP3 are present in the genome reference strain S288C"	Verified	chr12:486202-487290	486202-487290	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.44	
YLR161W		"Putative protein of unknown function; YLR156W, YLR159W, and YLR161W are three identical open reading frames encoded near the ribosomal DNA region of chromosome 12"	Uncharacterized	chr12:488998-489342	488998-489342	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.51	
YLR162W		Putative protein of unknown function; overexpression confers resistance to the antimicrobial peptide MiAMP1	Uncharacterized	chr12:489574-489930	489574-489930	62.6%	8689.04	8568.23	4876.96	6483.22	1082.77	5664.43	8628.64	5680.09	3373.60	31.85	23.06	13.98	-0.75	0.21	Frag<80[3907,3908]
YLR162W-A		Putative protein of unknown function identified by fungal homology comparisons and RT-PCR	Uncharacterized	chr12:490407-490595	490407-490595	46.2%	137.40	34.35	45.80	22.90	34.35	91.60	85.88	34.35	62.98	0.32	0.14	0.26	0.87	NaN	Matched[3908]
YLR163W-A		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data"	Dubious	chr12:492814-492927	492814-492927	99.6%	123.35	114.54	105.73	140.97	176.21	132.16	118.94	123.35	154.19	0.44	0.50	0.64	0.32	NaN	Covered/w/another[3910]
YLR163C	MAS1	"Smaller subunit of the mitochondrial processing protease (MPP), essential processing enzyme that cleaves the N-terminal targeting sequences from mitochondrially imported proteins"	Verified	chr12:491868-493256	491868-493256	99.2%	169.84	152.42	166.94	161.86	209.04	154.60	161.13	164.40	181.82	0.59	0.67	0.75	0.15	0.26	Matched[3910]
YLR164W		"Mitochondrial inner membrane of unknown function; similar to Tim18p and Sdh4p; expression induced by nitrogen limitation in a GLN3, GAT1-dependent manner"	Verified	chr12:493885-494391	493885-494391	98.8%	57.90	73.87	95.83	65.88	201.65	121.79	65.88	80.86	161.72	0.24	0.33	0.67	1.00	1.34	Covered/w/another[3912]
YLR165C	PUS5	"Pseudouridine synthase, catalyzes only the formation of pseudouridine (Psi)-2819 in mitochondrial 21S rRNA; not essential for viability"	Verified	chr12:494496-495260	494496-495260	99.2%	84.32	98.81	71.14	73.78	140.97	40.84	91.56	72.46	90.90	0.34	0.29	0.38	0.33	0.08	Matched[3912]
YLR166C	SEC10	"Essential 100kDa subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, and Exo84p), which has the essential function of mediating polarized targeting of secretory vesicles to active sites of exocytosis"	Verified	chr12:495431-498046	495431-498046	99.4%	126.46	123.77	99.94	96.48	134.92	108.78	125.12	98.21	121.85	0.46	0.40	0.50	0.31	0.06	Covered[3913]
YLR167W	RPS31	Fusion protein that is cleaved to yield a ribosomal protein of the small (40S) subunit and ubiquitin; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes; interacts genetically with translation factor eIF2B	Verified	chr12:498949-499407	498949-499407	77.4%	28745.92	24152.10	25318.15	21366.51	8418.73	6300.67	26449.01	23342.33	7359.70	97.64	94.75	30.49	-1.67	-3.59	Covered/w/another[3914]
YLR168C		Putative protein of unknown function that may be involved in intramitochondrial sorting; has similarity to Ups1p and to human PRELI; the green fluorescent protein (GFP)-tagged protein localizes to mitochondria	Uncharacterized	chr12:499580-500272	499580-500272	99.4%	165.50	200.34	184.37	197.44	551.66	344.06	182.92	190.90	447.86	0.68	0.77	1.86	1.23	0.75	Covered/w/another[3914,3915]
YLR169W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr12:500337-500690	500337-500690	99.2%	401.42	384.34	313.17	361.57	663.35	395.73	392.88	337.37	529.54	1.45	1.37	2.19	0.65	-0.07	Covered/w/another[3914,3915]
YLR171W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr12:500735-501124	500735-501124	99.4%	270.76	288.81	268.19	306.87	544.11	327.50	279.79	287.53	435.80	1.03	1.17	1.81	0.60	-0.06	Covered/w/another[3914,3915]
YLR170C	APS1	"Small subunit of the clathrin-associated adaptor complex AP-1, which is involved in protein sorting at the trans-Golgi network; homolog of the sigma subunit of the mammalian clathrin AP-1 complex"	Verified	chr12:500581-501051	500581-501051	99.3%	367.78	365.65	335.71	363.51	669.28	391.30	366.71	349.61	530.29	1.35	1.42	2.20	0.60	-0.15	Covered/w/another[3914,3915]
YLR172C	DPH5	"Methyltransferase required for synthesis of diphthamide, which is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); not essential for viability; GFP-Dph5p fusion protein localizes to the cytoplasm"	Verified	chr12:501262-502164	501262-502164	99.0%	461.07	309.99	318.94	315.58	165.63	135.41	385.53	317.26	150.52	1.42	1.29	0.62	-1.08	-0.63	Frag<80[3916]
YLR173W		Putative protein of unknown function	Uncharacterized	chr12:502423-504249	502423-504249	98.8%	70.39	74.83	69.28	59.86	82.03	72.61	72.61	64.57	77.32	0.27	0.26	0.32	0.26	0.84	Matched[3917]
YLR174W	IDP2	"Cytosolic NADP-specific isocitrate dehydrogenase, catalyzes oxidation of isocitrate to alpha-ketoglutarate; levels are elevated during growth on non-fermentable carbon sources and reduced during growth on glucose"	Verified	chr12:504593-505831	504593-505831	98.5%	29.49	48.34	25.40	19.66	40.14	21.30	38.92	22.53	30.72	0.14	0.09	0.13	0.45	0.59	Matched[3918]
YLR175W	CBF5	"Pseudouridine synthase catalytic subunit of box H/ACA small nucleolar ribonucleoprotein particles (snoRNPs), acts on both large and small rRNAs and on snRNA U2"	Verified	chr12:506136-507587	506136-507587	96.6%	2268.97	1366.66	1663.39	1499.33	186.17	84.88	1817.81	1581.36	135.52	6.71	6.42	0.56	-3.54	-3.93	Matched[3919]
YLR176C	RFX1	Protein involved in DNA damage and replication checkpoint pathway; recruits repressors Tup1p and Cyc8p to promoters of DNA damage-inducible genes; similar to a family of mammalian DNA binding RFX1-4 proteins	Verified	chr12:507799-510234	507799-510234	98.8%	52.76	57.75	58.16	52.76	138.34	135.43	55.25	55.46	136.89	0.20	0.23	0.57	1.30	1.32	Matched[3920]
YLR177W		Putative protein of unknown function; phosphorylated by Dbf2p-Mob1p in vitro; some strains contain microsatellite polymophisms at this locus; YLR177W is not an essential gene	Uncharacterized	chr12:511056-512942	511056-512942	97.9%	150.98	243.51	252.17	242.97	940.50	675.34	197.24	247.57	807.92	0.73	1.00	3.35	1.71	1.16	Matched[3921]
YLR178C	TFS1	"Carboxypeptidase Y inhibitor, function requires acetylation by the NatB N-terminal acetyltransferase; phosphatidylethanolamine-binding protein involved in protein kinase A signaling pathway"	Verified	chr12:513164-513823	513164-513823	98.6%	187.56	741.02	433.54	384.34	9158.16	6058.80	464.29	408.94	7608.48	1.71	1.66	31.52	4.22	3.26	Frag>80[3922,3923,3924]
YLR179C		"Protein of unknown function, transcription is activated by paralogous proteins Yrm1p and Yrr1p along with proteins involved in multidrug resistance; GFP-tagged protein localizes to the cytoplasm and nucleus; YLR179C is not essential"	Uncharacterized	chr12:514110-514715	514110-514715	98.7%	1307.87	1481.81	1266.06	1030.24	1185.78	1058.68	1394.84	1148.15	1122.23	5.15	4.66	4.65	-0.03	0.04	Frag>80[3923,3924,3925]
YLR180W	SAM1	"S-adenosylmethionine synthetase, catalyzes transfer of the adenosyl group of ATP to the sulfur atom of methionine; one of two differentially regulated isozymes (Sam1p and Sam2p)"	Verified	chr12:515264-516412	515264-516412	91.3%	1280.22	707.31	1206.82	828.38	117.25	22.88	993.76	1017.60	70.06	3.67	4.13	0.29	-3.86	-3.08	Matched[3926]
YLR181C	VTA1	"Multivesicular body (MVB) protein involved in endosomal protein sorting; regulates Vps4p activity by promoting its oligimeriztion; binds to Vps4p, Vps20p, and Vps60p; may act at a late step in MVB formation"	Verified	chr12:516680-517672	516680-517672	99.4%	168.18	173.24	158.05	136.77	181.35	152.98	170.71	147.41	167.17	0.63	0.60	0.69	0.18	-0.56	Matched[3927]
YLR182W	SWI6	"Transcription cofactor, forms complexes with DNA-binding proteins Swi4p and Mbp1p to regulate transcription at the G1/S transition; involved in meiotic gene expression; localization regulated by phosphorylation; potential Cdc28p substrate"	Verified	chr12:517942-520353	517942-520353	98.7%	155.50	132.38	130.28	140.37	139.11	114.73	143.94	135.32	126.92	0.53	0.55	0.53	-0.09	0.19	Matched[3928]
YLR183C	TOS4	"Transcription factor that binds to a number of promoter regions, particularly promoters of some genes involved in pheromone response and cell cycle; potential Cdc28p substrate; expression is induced in G1 by bound SBF"	Verified	chr12:520545-522014	520545-522014	99.0%	226.14	124.41	171.84	151.22	63.92	29.56	175.27	161.53	46.74	0.65	0.66	0.19	-1.79	-1.29	Matched[3929]
YLR184W		"Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr12:522108-522455	522108-522455	98.6%	0.00	0.00	0.00	0.00	8.74	0.00	0.00	0.00	4.37	0.00	0.00	0.02	Inf	-1.08	Overlap[3929]
YLR185W	RPL37A	"Protein component of the large (60S) ribosomal subunit, has similarity to Rpl37Bp and to rat L37 ribosomal protein"	Verified	chr12:522665-523290	522665-522671,523031-523290	77.3%	7535.11	6232.45	6576.27	4707.02	1898.31	924.94	6883.78	5641.65	1411.62	25.41	22.90	5.85	-2.00	-2.92	Matched[3930]
YLR186W	EMG1	Protein required for the maturation of the 18S rRNA and for 40S ribosome production; associated with spindle/microtubules; nuclear localization depends on physical interaction with Nop14p; may bind snoRNAs	Verified	chr12:523634-524392	523634-524392	98.8%	414.55	293.25	303.92	178.62	37.32	10.66	353.90	241.27	23.99	1.31	0.98	0.10	-3.33	-3.11	Frag>80[3931,3932]
YLR187W	SKG3	"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck; potential Cdc28p substrate; similar to Caf120p and Skg4p"	Uncharacterized	chr12:524867-527947	524867-527947	98.9%	74.85	59.09	67.63	46.29	36.77	59.75	66.97	56.96	48.26	0.25	0.23	0.20	-0.24	0.66	Matched[3933]
YLR188W	MDL1	"Mitochondrial inner membrane half-type ATP-binding cassette (ABC) transporter, mediates export of peptides generated upon proteolysis of mitochondrial proteins, plays a role in the regulation of cellular resistance to oxidative stress"	Verified	chr12:528302-530389	528302-530389	98.7%	147.08	167.96	142.23	135.43	72.33	72.33	157.52	138.83	72.33	0.58	0.56	0.30	-0.94	-0.55	Frag>80[3934,3935]
YLR189C	ATG26	"UDP-glucose:sterol glucosyltransferase, conserved enzyme involved in synthesis of sterol glucoside membrane lipids, involved in autophagy"	Verified	chr12:530799-534395	530799-534395	99.2%	107.29	140.63	108.41	110.93	166.40	163.32	123.96	109.67	164.86	0.46	0.45	0.68	0.59	0.97	Matched[3936]
YLR190W	MMR1	"Phosphorylated protein of the mitochondrial outer membrane, localizes only to mitochondria of the bud; interacts with Myo2p to mediate mitochondrial distribution to buds; mRNA is targeted to the bud via the transport system involving She2p"	Verified	chr12:535216-536691	535216-536691	98.6%	245.36	279.04	261.86	265.29	309.97	251.55	262.20	263.57	280.76	0.97	1.07	1.16	0.09	0.82	Matched[3937]
YLR191W	PEX13	"Integral peroxisomal membrane required for the translocation of peroxisomal matrix proteins, interacts with the PTS1 signal recognition factor Pex5p and the PTS2 signal recognition factor Pex7p, forms a complex with Pex14p and Pex17p"	Verified	chr12:537274-538434	537274-538434	98.5%	71.68	79.55	75.18	67.31	88.29	53.33	75.62	71.25	70.81	0.28	0.29	0.29	-0.01	0.35	Matched[3938]
YLR192C	HCR1	Dual function protein involved in translation initiation as a substoichiometric component of eukaryotic translation initiation factor 3 (eIF3) and required for processing of 20S pre-rRNA; binds to eIF3 subunits Rpg1p and Prt1p and 18S rRNA	Verified	chr12:538794-539591	538794-539591	99.1%	1125.40	891.46	1131.72	988.83	838.36	737.20	1008.43	1060.27	787.78	3.72	4.30	3.26	-0.43	0.04	Covered/w/another[3939]
YLR193C	UPS1	Mitochondrial intermembrane space protein that regulates alternative processing and sorting of Mgm1p and other proteins; required for normal mitochondrial morphology; ortholog of human PRELI	Verified	chr12:540011-540538	540011-540538	99.0%	160.73	220.04	216.22	187.51	386.51	302.32	190.39	201.87	344.42	0.70	0.82	1.43	0.77	0.82	Covered/w/another[3939]
YLR194C		Structural constituent of the cell wall attached to the plasma membrane by a GPI-anchor; expression is upregulated in response to cell wall stress	Uncharacterized	chr12:540811-541575	540811-541575	98.6%	208.25	205.59	217.53	180.39	427.10	224.16	206.92	198.96	325.63	0.76	0.81	1.35	0.71	1.06	Frag>80[3940,3941]
YLR195C	NMT1	"N-myristoyl transferase, catalyzes the cotranslational, covalent attachment of myristic acid to the N-terminal glycine residue of several proteins involved in cellular growth and signal transduction"	Verified	chr12:541939-543306	541939-543306	99.2%	310.10	265.91	290.21	299.79	131.85	103.12	288.00	295.00	117.48	1.06	1.20	0.49	-1.33	-0.99	Matched[3942]
YLR196W	PWP1	Protein with WD-40 repeats involved in rRNA processing; associates with trans-acting ribosome biogenesis factors; similar to beta-transducin superfamily	Verified	chr12:543970-545700	543970-545700	98.5%	346.45	196.38	221.00	163.55	13.48	15.24	271.41	192.28	14.36	1.00	0.78	0.06	-3.74	-4.80	Frag>80[3943,3944]
YLR197W	SIK1	Essential evolutionarily-conserved nucleolar protein component of the box C/D snoRNP complexes that direct 2'-O-methylation of pre-rRNA during its maturation; overexpression causes spindle orientation defects	Verified	chr12:546099-547613	546099-547613	97.8%	2920.42	1601.98	2067.79	1993.53	309.86	200.50	2261.20	2030.66	255.18	8.35	8.24	1.06	-2.99	-3.71	Matched[3945]
YLR198C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene SIK1/YLR197W"	Dubious	chr12:547288-547647	547288-547647	94.0%	4579.45	2421.29	3089.43	2915.00	505.54	280.86	3500.37	3002.22	393.20	12.92	12.19	1.63	-2.93	-2.54	Covered/w/another[3945]
YLR199C	PBA1	Protein involved in 20S proteasome assembly; forms a heterodimer with Add66p that binds to proteasome precursors; similar to human PAC1 constituent of the PAC1-PAC2 complex involved in proteasome assembly	Verified	chr12:547855-548771	547855-548679,548766-548771	99.0%	125.25	137.41	119.17	126.47	193.35	117.96	131.33	122.82	155.65	0.48	0.50	0.64	0.34	-0.74	Covered/w/another[3946]
YLR200W	YKE2	"Subunit of the heterohexameric Gim/prefoldin protein complex involved in the folding of alpha-tubulin, beta-tubulin, and actin"	Verified	chr12:549014-549358	549014-549358	98.2%	445.65	377.77	383.67	321.69	321.69	233.15	411.71	352.68	277.42	1.52	1.43	1.15	-0.35	-0.80	Covered/w/another[3946]
YLR201C	COQ9	Protein required for ubiquinone (coenzyme Q) biosynthesis and respiratory growth; localizes to the matrix face of the mitochondrial inner membrane in a large complex with ubiquinone biosynthetic enzymes	Verified	chr12:549513-550295	549513-550295	98.9%	196.37	273.89	215.75	236.42	373.36	244.17	235.13	226.09	308.77	0.87	0.92	1.28	0.45	0.20	Covered/w/another[3946]
YLR202C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF YLR201C; ORF contains a putative intron"	Dubious	chr12:550196-550638	550196-550460,550577-550638	98.9%	126.76	132.94	111.30	111.30	244.24	139.12	129.85	111.30	191.68	0.48	0.45	0.79	0.78	-0.13	Covered/w/another[3946]
YLR203C	MSS51	Nuclear encoded protein required for translation of COX1 mRNA; binds to Cox1 protein	Verified	chr12:550652-551962	550652-551962	98.7%	327.76	379.55	434.44	339.36	584.40	489.32	353.66	386.90	536.86	1.31	1.57	2.22	0.47	0.83	Covered/w/another[3946]
YLR204W	QRI5	Mitochondrial protein of unknown function	Verified	chr12:552272-552607	552272-552607	97.9%	465.05	501.52	492.40	413.37	668.69	361.70	483.28	452.89	515.20	1.78	1.84	2.13	0.19	0.14	Matched[3947]
YLR205C	HMX1	"ER localized, heme-binding peroxidase involved in the degradation of heme; does not exhibit heme oxygenase activity despite similarity to heme oxygenases; expression regulated by AFT1"	Verified	chr12:552726-553679	552726-553679	98.8%	32.89	23.34	39.26	13.79	143.24	77.45	28.12	26.53	110.34	0.10	0.11	0.46	2.06	1.64	Matched[3948]
YLR206W	ENT2	Epsin-like protein required for endocytosis and actin patch assembly and functionally redundant with Ent1p; contains clathrin-binding motif at C-terminus	Verified	chr12:554580-556421	554580-556421	97.6%	379.45	356.64	397.26	360.53	600.89	468.47	368.05	378.89	534.68	1.36	1.54	2.22	0.50	0.86	Matched[3949]
YLR207W	HRD3	"Resident protein of the ER membrane that plays a central role in ER-associated protein degradation (ERAD), forms HRD complex with Hrd1p and ERAD determinants that engages in lumen to cytosol communication and coordination of ERAD events"	Verified	chr12:556790-559291	556790-559291	98.6%	92.40	104.15	88.35	72.14	103.34	79.84	98.27	80.24	91.59	0.36	0.33	0.38	0.19	0.67	Frag>80[3950,3951]
YLR208W	SEC13	"Component of both the Nup84 nuclear pore sub-complex and of the COPII complex (Sar1p, Sec13p, Sec16p, Sec23p, Sec24p, Sec31p, Sfb2p, and Sfb3p) which is important for the formation of ER to Golgi transport vesicles"	Verified	chr12:559553-560446	559553-560446	98.6%	1150.15	1008.37	1061.68	1054.87	910.82	746.35	1079.26	1058.27	828.58	3.98	4.30	3.43	-0.35	-0.31	Matched[3952]
YLR209C	PNP1	"Purine nucleoside phosphorylase, specifically metabolizes inosine and guanosine nucleosides"	Verified	chr12:560799-561734	560799-561734	99.0%	233.08	213.66	221.21	143.52	242.79	141.36	223.37	182.37	192.08	0.82	0.74	0.80	0.07	0.08	Matched[3953]
YLR210W	CLB4	"B-type cyclin involved in cell cycle progression; activates Cdc28p to promote the G2/M transition; may be involved in DNA replication and spindle assembly; accumulates during S phase and G2, then targeted for ubiquitin-mediated degradation"	Verified	chr12:562010-563392	562010-563392	98.7%	93.78	86.45	88.65	54.22	74.73	34.43	90.12	71.43	54.58	0.33	0.29	0.23	-0.39	0.11	Matched[3954]
YLR211C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YLR211C is not an essential gene; ORF contains an intron	Uncharacterized	chr12:563794-564533	563794-564456,564516-564533	99.6%	73.68	110.52	78.10	61.89	156.21	89.89	92.10	70.00	123.05	0.34	0.28	0.51	0.81	0.33	Matched[3955]
YLR212C	TUB4	"Gamma-tubulin, involved in nucleating microtubules from both the cytoplasmic and nuclear faces of the spindle pole body"	Verified	chr12:564862-566283	564862-566283	98.9%	118.03	121.59	108.08	91.01	54.04	30.58	119.81	99.55	42.31	0.44	0.40	0.18	-1.23	-0.74	Matched[3956]
YLR213C	CRR1	"Putative glycoside hydrolase of the spore wall envelope; required for normal spore wall assembly, possibly for cross-linking between the glucan and chitosan layers; expressed during sporulation"	Verified	chr12:566656-567924	566656-567924	98.9%	39.03	31.06	31.86	23.90	16.73	30.27	35.05	27.88	23.50	0.13	0.11	0.10	-0.25	0.45	
YLR214W	FRE1	"Ferric reductase and cupric reductase, reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low copper and iron levels"	Verified	chr12:568569-570629	568569-570629	99.0%	352.52	57.85	224.06	82.86	80.90	35.30	205.18	153.46	58.10	0.76	0.62	0.24	-1.40	-1.16	Matched[3957]
YLR215C	CDC123	Protein involved in nutritional control of the cell cycle; regulates abundance of the translation initiation factor eIF2; ortholog of human D123 protein	Verified	chr12:570778-571860	570778-571860	99.1%	77.34	65.22	79.20	49.38	41.93	29.82	71.28	64.29	35.87	0.26	0.26	0.15	-0.84	-0.64	Matched[3958]
YLR217W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene CPR6"	Dubious	chr12:572911-573234	572911-573234	99.6%	362.60	353.31	449.38	430.79	8798.55	8079.54	357.95	440.08	8439.05	1.32	1.79	34.97	4.26	0.00	Matched[3960]
YLR216C	CPR6	"Peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds to Hsp82p and contributes to chaperone activity"	Verified	chr12:572098-573213	572098-573213	99.2%	569.94	504.91	566.33	634.98	13367.96	10408.94	537.43	600.65	11888.45	1.98	2.44	49.26	4.31	3.37	Frag>80[3959,3960]
YLR218C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YLR218C is not essential; mutants exhibit glycogen storage defects and growth defects on a non-fermentable carbon source	Uncharacterized	chr12:573468-573920	573468-573920	99.0%	173.96	194.03	176.19	189.57	321.16	140.51	184.00	182.88	230.83	0.68	0.74	0.96	0.34	-0.60	Covered/w/another[3961]
YLR219W	MSC3	"Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the cell periphery; msc3 mutants are defective in directing meiotic recombination events to homologous chromatids; potential Cdc28p substrate"	Verified	chr12:574153-576339	574153-576339	98.5%	113.72	129.03	137.85	131.82	243.22	263.64	121.38	134.84	253.43	0.45	0.55	1.05	0.91	1.39	Covered/w/another[3961]
YLR220W	CCC1	"Putative vacuolar Fe2+/Mn2+ transporter; suppresses respiratory deficit of yfh1 mutants, which lack the ortholog of mammalian frataxin, by preventing mitochondrial iron accumulation"	Verified	chr12:576827-577795	576827-577795	98.4%	217.17	293.76	295.86	232.91	294.81	226.61	255.46	264.38	260.71	0.94	1.07	1.08	-0.02	0.23	Covered/w/another[3961]
YLR221C	RSA3	"Protein with a likely role in ribosomal maturation, required for accumulation of wild-type levels of large (60S) ribosomal subunits; binds to the helicase Dbp6p in pre-60S ribosomal particles in the nucleolus"	Verified	chr12:578364-579026	578364-579026	99.4%	411.23	233.69	227.62	209.41	42.49	9.10	322.46	218.51	25.80	1.19	0.89	0.11	-3.08	-3.13	Covered/w/another[3961]
YLR222C	UTP13	"Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA"	Verified	chr12:579320-581773	579320-581773	99.3%	171.89	102.15	107.89	93.54	9.85	2.05	137.02	100.71	5.95	0.51	0.41	0.02	-4.08	-4.77	Matched[3962]
YLR222C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene IFH1"	Dubious	chr12:582008-582238	582008-582238	99.2%	135.35	144.08	104.78	34.93	52.39	39.29	139.71	69.86	45.84	0.52	0.28	0.19	-0.61	NaN	Covered/w/another[3963]
YLR223C	IFH1	"Essential protein with a highly acidic N-terminal domain; IFH1 exhibits genetic interactions with FHL1, overexpression interferes with silencing at telomeres and HM loci; potential Cdc28p substrate"	Verified	chr12:582235-585492	582235-585492	99.2%	220.27	216.87	120.97	118.18	67.75	84.46	218.57	119.57	76.11	0.81	0.49	0.32	-0.65	-0.05	Matched[3963]
YLR224W		F-box protein and component of SCF ubiquitin ligase complexes involved in ubiquitin-dependent protein catabolism; readily monoubiquitinated in vitro by SCF-Ubc4 complexes; YLR224W is not an essential gene	Uncharacterized	chr12:586466-587575	586466-587575	98.8%	187.76	205.99	190.50	200.52	187.76	132.16	196.88	195.51	159.96	0.73	0.79	0.66	-0.29	0.23	Matched[3964]
YLR225C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YLR225C is not an essential gene	Uncharacterized	chr12:587697-588920	587697-588920	99.3%	254.14	267.30	258.25	260.72	401.36	285.39	260.72	259.48	343.37	0.96	1.05	1.42	0.40	0.55	Matched[3965]
YLR226W	BUR2	Cyclin for the Sgv1p (Bur1p) protein kinase; Sgv1p and Bur2p comprise a CDK-cyclin complex involved in transcriptional regulation through its phosphorylation of the carboxy-terminal domain of the largest subunit of RNA polymerase II	Verified	chr12:589356-590543	589356-590543	98.9%	96.16	98.71	91.05	77.44	61.27	44.25	97.44	84.25	52.76	0.36	0.34	0.22	-0.68	-0.37	Matched[3966]
YLR227C	ADY4	"Structural component of the meiotic outer plaque, which is a membrane-organizing center that assembles on the cytoplasmic face of the spindle pole body during meiosis II and triggers the formation of the prospore membrane"	Verified	chr12:590564-592045	590564-592045	99.3%	106.68	99.88	76.78	57.76	76.78	31.94	103.28	67.27	54.36	0.38	0.27	0.23	-0.31	-0.10	Frag<80[3967,3968]
YLR228C	ECM22	"Sterol regulatory element binding protein, regulates transcription of the sterol biosynthetic genes ERG2 and ERG3; member of the fungus-specific Zn[2]-Cys[6] binuclear cluster family of transcription factors; homologous to Upc2p"	Verified	chr12:600021-602465	600021-602465	98.7%	99.84	98.59	99.84	87.00	83.27	83.27	99.22	93.42	83.27	0.37	0.38	0.35	-0.17	0.21	Matched[3972]
YLR230W		Dubious open reading frame unlikely to encode a functional protein; overlaps 5' end of essential CDC42 gene which encodes a small Rho-like GTPase essential for establishment and maintenance of cell polarity	Dubious	chr12:604576-604881	604576-604881	99.2%	830.20	649.00	876.32	728.07	457.93	418.39	739.60	802.20	438.16	2.73	3.26	1.82	-0.87	0.39	Matched[3974]
YLR229C	CDC42	"Small rho-like GTPase, essential for establishment and maintenance of cell polarity; mutants have defects in the organization of actin and septins"	Verified	chr12:604214-604789	604214-604789	98.9%	992.24	813.11	1043.17	890.38	593.59	460.12	902.68	966.78	526.85	3.33	3.92	2.18	-0.88	-0.53	Matched[3974]
YLR232W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene BNA5"	Dubious	chr12:606832-607179	606832-607179	99.4%	107.01	89.66	107.01	133.04	161.97	156.18	98.34	120.03	159.07	0.36	0.49	0.66	0.41	0.08	Covered/w/another[3975]
YLR231C	BNA5	"Kynureninase, required for biosynthesis of nicotinic acid from tryptophan via kynurenine pathway"	Verified	chr12:605760-607121	605760-607121	99.1%	180.80	138.56	165.98	171.90	243.78	197.84	159.68	168.94	220.81	0.59	0.69	0.91	0.39	0.68	Matched[3975]
YLR233C	EST1	"TLC1 RNA-associated factor involved in telomere length regulation as the recruitment subunit of the telomerase holoenzyme, has a possible role in activating Est2p-TLC1-RNA bound to the telomere"	Verified	chr12:607427-609526	607427-609526	97.6%	52.71	51.25	34.65	43.93	41.00	21.96	51.98	39.29	31.48	0.19	0.16	0.13	-0.32	0.05	Matched[3976]
YLR234W	TOP3	"DNA Topoisomerase III, conserved protein that functions in a complex with Sgs1p and Rmi1p to relax single-stranded negatively-supercoiled DNA preferentially, involved in telomere stability and regulation of mitotic recombination"	Verified	chr12:609785-611755	609785-611755	98.2%	18.59	14.98	16.01	16.01	21.69	24.27	16.78	16.01	22.98	0.06	0.06	0.10	0.52	0.95	Matched[3977]
YLR235C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene TOP3"	Dubious	chr12:611534-611932	611534-611932	98.5%	20.35	15.26	17.81	12.72	45.79	40.70	17.81	15.26	43.24	0.07	0.06	0.18	1.50	0.10	Covered/w/another[3977]
YLR236C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr12:611796-612119	611796-612119	98.0%	37.80	18.90	28.35	12.60	53.54	40.94	28.35	20.47	47.24	0.10	0.08	0.20	1.21	0.73	Covered/w/another[3977]
YLR237W	THI7	"Plasma membrane transporter responsible for the uptake of thiamine, member of the major facilitator superfamily of transporters; mutation of human ortholog causes thiamine-responsive megaloblastic anemia"	Verified	chr12:612369-614165	612369-614165	82.2%	172.60	136.73	147.55	91.38	91.38	60.92	154.66	119.47	76.15	0.57	0.48	0.32	-0.65	-0.26	Covered/w/another[3978]
YLR238W	FAR10	"Protein involved in G1 cell cycle arrest in response to pheromone, in a pathway different from the Far1p-dependent pathway; interacts with Far3p, Far7p, Far8p, Far9p, and Far11p; potential Cdc28p substrate"	Verified	chr12:614757-616193	614757-616193	98.6%	86.07	84.66	71.96	88.90	122.06	104.42	85.37	80.43	113.24	0.32	0.33	0.47	0.49	0.77	Covered/w/another[3978]
YLR239C	LIP2	"Lipoyl ligase, involved in the modification of mitochondrial enzymes by the attachment of lipoic acid groups"	Verified	chr12:616334-617320	616334-617320	99.3%	126.53	136.73	125.51	107.14	178.57	134.69	131.63	116.33	156.63	0.49	0.47	0.65	0.43	0.53	Covered/w/another[3978]
YLR240W	VPS34	Phosphatidylinositol 3-kinase responsible for the synthesis of phosphatidylinositol 3-phosphate; forms membrane-associated signal transduction complex with Vps15p to regulate protein sorting; activated by the GTP-bound form of Gpa1p	Verified	chr12:617535-620162	617535-620162	98.9%	60.42	80.04	69.65	60.42	104.67	103.51	70.23	65.03	104.09	0.26	0.26	0.43	0.68	1.42	Matched[3979]
YLR241W		"Putative protein of unknown function, may be involved in detoxification"	Uncharacterized	chr12:620475-622823	620475-622823	98.8%	152.89	221.36	164.09	153.75	194.66	212.32	187.13	158.92	203.49	0.69	0.65	0.84	0.36	0.91	Matched[3980]
YLR242C	ARV1	Protein required for normal intracellular sterol distribution and for sphingolipid metabolism; similar to Nup120p and C. elegans R05H5.5 protein	Verified	chr12:622920-623885	622920-623885	99.1%	103.39	92.94	90.85	56.39	65.79	34.46	98.16	73.62	50.13	0.36	0.30	0.21	-0.55	-0.63	Matched[3981]
YLR243W		Putative protein of unknown function; YLR243W is an essential gene	Uncharacterized	chr12:624205-625023	624205-625023	98.9%	181.43	138.23	134.53	123.42	53.07	33.32	159.83	128.97	43.20	0.59	0.52	0.18	-1.58	0.02	Matched[3982]
YLR244C	MAP1	"Methionine aminopeptidase, catalyzes the cotranslational removal of N-terminal methionine from nascent polypeptides; function is partially redundant with that of Map2p"	Verified	chr12:625170-626333	625170-626333	98.9%	1035.62	927.89	918.33	796.70	495.22	409.21	981.76	857.52	452.22	3.62	3.48	1.87	-0.92	-0.34	Matched[3983]
YLR245C	CDD1	"Cytidine deaminase; catalyzes the modification of cytidine to uridine in vitro but native RNA substrates have not been identified, localizes to both the nucleus and cytoplasm"	Verified	chr12:626504-626932	626504-626932	98.9%	91.95	132.04	110.82	129.68	150.90	155.61	112.00	120.25	153.26	0.41	0.49	0.63	0.35	0.97	Covered/w/another[3984]
YLR246W	ERF2	"Subunit of a palmitoyltransferase, composed of Erf2p and Shr5p, that adds a palmitoyl lipid moiety to heterolipidated substrates such as Ras1p and Ras2p through a thioester linkage; mutants partially mislocalize Ras2p to the vacuole"	Verified	chr12:627120-628199	627120-628199	98.8%	100.30	134.98	100.30	97.48	134.04	78.74	117.64	98.89	106.39	0.43	0.40	0.44	0.11	0.23	Matched[3984]
YLR247C		Putative helicase; localized to mitochondria and the nucleus; YLR247C is not an essential gene; null mutant displays increased levels of spontaneous Rad52 foci	Uncharacterized	chr12:628686-633356	628686-633356	99.3%	59.30	54.34	43.99	38.81	89.49	74.61	56.82	41.40	82.05	0.21	0.17	0.34	0.99	0.95	Matched[3985]
YLR248W	RCK2	Protein kinase involved in the response to oxidative and osmotic stress; identified as suppressor of S. pombe cell cycle checkpoint mutations	Verified	chr12:634254-636086	634254-636086	98.6%	390.99	414.78	416.99	455.70	770.38	638.20	402.89	436.34	704.29	1.49	1.77	2.92	0.69	1.37	Covered[3986]
YLR249W	YEF3	"Translational elongation factor 3, stimulates the binding of aminoacyl-tRNA (AA-tRNA) to ribosomes by releasing EF-1 alpha from the ribosomal complex; contains two ABC cassettes; binds and hydrolyses ATP"	Verified	chr12:636782-639916	636782-639916	97.4%	7856.33	5602.30	6701.15	6306.15	967.83	884.32	6729.31	6503.65	926.08	24.84	26.40	3.84	-2.81	-3.22	Frag>80[3987,3988,3989]
YLR250W	SSP120	Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern	Verified	chr12:640319-641023	640319-641023	98.5%	468.24	476.89	557.57	524.43	1082.00	734.78	472.57	541.00	908.39	1.74	2.20	3.76	0.75	0.92	Matched[3990]
YLR251W	SYM1	Protein required for ethanol metabolism; induced by heat shock and localized to the inner mitochondrial membrane; homologous to mammalian peroxisomal membrane protein Mpv17	Verified	chr12:641466-642059	641466-642059	98.8%	122.72	194.30	180.67	131.24	1600.45	894.82	158.51	155.95	1247.64	0.59	0.63	5.17	3.00	2.56	Matched[3992]
YLR252W		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data; partially overlaps the verified gene SYM1, a mitochondrial protein involved in ethanol metabolism"	Dubious	chr12:641959-642264	641959-642264	98.8%	132.25	254.58	175.23	188.46	2076.32	1110.90	193.42	181.84	1593.61	0.71	0.74	6.60	3.13	2.64	Matched[3992]
YLR253W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; transcription is periodic during the metabolic cycle; YLR253W is not an essential gene"	Uncharacterized	chr12:642629-644338	642629-644338	98.6%	138.74	141.11	168.98	139.33	117.40	64.63	139.93	154.16	91.01	0.52	0.63	0.38	-0.76	0.37	Matched[3993]
YLR254C	NDL1	"Homolog of nuclear distribution factor NudE, NUDEL; interacts with Pac1p and regulates dynein targeting to microtubule plus ends"	Verified	chr12:644406-644975	644406-644975	99.2%	111.44	212.26	136.20	141.51	396.23	224.65	161.85	138.86	310.44	0.60	0.56	1.29	1.16	0.83	Matched[3994]
YLR255C		"Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr12:645602-645955	645602-645955	99.1%	2.85	11.40	5.70	2.85	5.70	22.81	7.13	4.28	14.26	0.03	0.02	0.06	1.74	0.30	
YLR256W	HAP1	Zinc finger transcription factor involved in the complex regulation of gene expression in response to levels of heme and oxygen; the S288C sequence differs from other strain backgrounds due to a Ty1 insertion in the carboxy terminus	Verified	chr12:646417-650925	646417-650925	96.6%	254.48	474.06	248.97	207.86	235.19	274.01	364.27	228.42	254.60	1.34	0.93	1.05	0.16	0.62	Frag>80[3995,3996,3997]
YLR257W		Putative protein of unknown function	Uncharacterized	chr12:658828-659793	658828-659793	98.4%	922.92	1015.52	1176.53	1223.89	2344.65	1413.31	969.22	1200.21	1878.98	3.58	4.87	7.79	0.65	-0.06	Matched[4000]
YLR258W	GSY2	"Glycogen synthase, similar to Gsy1p; expression induced by glucose limitation, nitrogen starvation, heat shock, and stationary phase; activity regulated by cAMP-dependent, Snf1p and Pho85p kinases as well as by the Gac1p-Glc7p phosphatase"	Verified	chr12:660718-662835	660718-662835	98.7%	313.47	753.77	682.46	841.35	3446.28	2940.89	533.62	761.90	3193.59	1.97	3.09	13.23	2.07	1.64	Covered[4001]
YLR259C	HSP60	Tetradecameric mitochondrial chaperonin required for ATP-dependent folding of precursor polypeptides and complex assembly; prevents aggregation and mediates protein refolding after heat shock; role in mtDNA transmission; phosphorylated	Verified	chr12:663286-665004	663286-665004	99.0%	1457.77	1192.77	1480.10	1482.45	8111.44	8085.59	1325.27	1481.27	8098.52	4.89	6.01	33.55	2.45	2.83	Matched[4002]
YLR260W	LCB5	"Minor sphingoid long-chain base kinase, paralog of Lcb4p responsible for few percent of the total activity, possibly involved in synthesis of long-chain base phosphates, which function as signaling molecules"	Verified	chr12:665846-667909	665846-667909	98.4%	81.75	73.37	61.06	71.41	210.77	158.57	77.56	66.23	184.67	0.29	0.27	0.77	1.48	1.27	Covered[4003]
YLR261C	VPS63	"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; 98% of ORF overlaps the verified gene YPT6; deletion causes a vacuolar protein sorting defect"	Dubious	chr12:668239-668565	668239-668565	99.6%	442.34	402.41	485.34	423.91	546.78	297.96	422.37	454.63	422.37	1.56	1.85	1.75	-0.11	-0.10	Matched[4004]
YLR262C	YPT6	"GTPase, Ras-like GTP binding protein involved in the secretory pathway, required for fusion of endosome-derived vesicles with the late Golgi, maturation of the vacuolar carboxypeptidase Y; has similarity to the human GTPase, Rab6"	Verified	chr12:668246-668893	668246-668893	99.5%	389.15	317.83	386.05	348.84	434.11	262.02	353.49	367.44	348.06	1.30	1.49	1.44	-0.08	-0.13	Matched[4004]
YLR262C-A	TMA7	"Protein of unknown that associates with ribosomes; null mutant exhibits translation defects, altered polyribosome profiles, and resistance to the translation inhibitor anisomcyin"	Verified	chr12:669470-669664	669470-669664	99.3%	2945.10	2485.25	2412.92	2345.75	2371.58	1431.22	2715.18	2379.33	1901.40	10.02	9.66	7.88	-0.32	-1.97	Matched[4005]
YLR263W	RED1	"Protein component of the axial elements of the synaptonemal complex, involved in chromosome segregation during the first meiotic division; interacts with Hop1p; required for wild-type levels of Mek1p kinase activity"	Verified	chr12:670342-672825	670342-672825	98.8%	33.41	46.85	28.11	20.78	26.07	19.96	40.13	24.44	23.02	0.15	0.10	0.10	-0.09	0.53	Frag<80[4006,4007]
YLR264W	RPS28B	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps28Ap and has similarity to rat S28 ribosomal protein	Verified	chr12:673133-673336	673133-673336	94.0%	4632.04	4209.52	3458.38	3004.56	1956.10	1783.96	4420.78	3231.47	1870.03	16.32	13.12	7.75	-0.79	-1.65	Matched[4008]
YLR264C-A		Putative protein of unknown function	Uncharacterized	chr12:673830-673946	673830-673946	99.5%	5572.81	4628.27	3623.61	3280.14	2507.33	1897.67	5100.54	3451.88	2202.50	18.83	14.01	9.13	-0.65	NaN	Matched[4008]
YLR265C	NEJ1	Protein involved in regulation of nonhomologous end joining; repressed by MAT heterozygosity; associates with Lif1p and regulates its cellular distribution	Verified	chr12:674429-675457	674429-675457	99.2%	147.86	148.84	120.45	115.55	154.72	86.17	148.35	118.00	120.45	0.55	0.48	0.50	0.03	-0.24	Covered/w/another[4009]
YLR266C	PDR8	"Transcription factor; targets include ATP-binding cassette (ABC) transporters, major facilitator superfamily transporters, and other genes involved in the pleiotropic drug resistance (PDR) phenomenon"	Verified	chr12:675621-677726	675621-677726	99.2%	110.14	148.93	108.23	93.38	134.09	61.78	129.54	100.81	97.93	0.48	0.41	0.41	-0.04	-2.11	Covered/w/another[4009]
YLR267W		"Protein of unknown function, overproduction suppresses a pam1 slv3 double null mutation"	Uncharacterized	chr12:678214-679926	678214-679926	99.2%	26.49	36.50	35.32	27.67	65.93	35.91	31.50	31.50	50.92	0.12	0.13	0.21	0.69	0.91	Matched[4010]
YLR268W	SEC22	"R-SNARE protein; assembles into SNARE complex with Bet1p, Bos1p and Sed5p; cycles between the ER and Golgi complex; involved in anterograde and retrograde transport between the ER and Golgi; synaptobrevin homolog"	Verified	chr12:680202-680846	680202-680846	98.9%	335.40	426.30	365.18	329.13	410.63	291.52	380.85	347.16	351.07	1.41	1.41	1.45	0.02	0.32	Matched[4011]
YLR270W	DCS1	"Non-essential hydrolase involved in mRNA decapping, may function in a feedback mechanism to regulate deadenylation, contains pyrophosphatase activity and a HIT (histidine triad) motif; interacts with neutral trehalase Nth1p"	Verified	chr12:681188-682240	681188-682240	98.8%	332.55	476.71	440.19	458.45	1411.88	1329.22	404.63	449.32	1370.55	1.49	1.82	5.68	1.61	1.71	Matched[4012]
YLR269C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr12:680868-681218	680868-681218	99.1%	140.80	172.41	166.67	160.92	376.44	370.69	156.61	163.79	373.56	0.58	0.66	1.55	1.19	1.03	Covered/w/another[4012]
YLR271W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and the nucleus and is induced in response to the DNA-damaging agent MMS	Uncharacterized	chr12:682739-683563	682739-683563	98.6%	82.40	103.31	82.40	111.91	313.60	166.03	92.85	97.16	239.82	0.34	0.39	0.99	1.30	0.80	Matched[4013]
YLR272C	YCS4	"Non-SMC subunit of the condensin complex (Smc2p-Smc4p-Ycs4p-Brn1p-Ycg1p); required for establishment and maintenance of chromosome condensation, chromosome segregation, chromatin binding of condensin and silencing at the mating type locus"	Verified	chr12:683674-687204	683674-687204	99.3%	77.58	57.61	58.18	48.20	38.22	32.23	67.60	53.19	35.22	0.25	0.22	0.15	-0.59	-0.33	Frag>80[4014]
YLR273C	PIG1	Putative targeting subunit for the type-1 protein phosphatase Glc7p that tethers it to the Gsy2p glycogen synthase	Verified	chr12:689085-691031	689085-691031	99.1%	27.47	25.91	35.24	31.61	78.77	53.38	26.69	33.43	66.08	0.10	0.14	0.27	0.98	1.07	Matched[4015]
YLR274W	MCM5	"Component of the hexameric MCM complex, which is important for priming origins of DNA replication in G1 and becomes an active ATP-dependent helicase that promotes DNA melting and elongation when activated by Cdc7p-Dbf4p in S-phase"	Verified	chr12:691557-693884	691557-693884	98.6%	116.29	127.18	117.60	124.56	114.55	73.17	121.73	121.08	93.86	0.45	0.49	0.39	-0.37	0.01	Matched[4016]
YLR275W	SMD2	"Core Sm protein Sm D2; part of heteroheptameric complex (with Smb1p, Smd1p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm D2"	Verified	chr12:694380-694802	694380-694384,694475-694802	98.6%	164.53	127.97	164.53	131.01	121.87	85.31	146.25	147.77	103.59	0.54	0.60	0.43	-0.51	-0.61	Matched[4017]
YLR276C	DBP9	ATP-dependent RNA helicase of the DEAD-box family involved in biogenesis of the 60S ribosomal subunit	Verified	chr12:695048-696832	695048-696832	99.3%	389.28	187.31	248.24	202.54	27.64	2.82	288.29	225.39	15.23	1.06	0.91	0.06	-3.89	-3.71	Matched[4018]
YLR277C	YSH1	"Putative endoribonuclease, subunit of the mRNA cleavage and polyadenylation specificity complex required for 3' processing of mRNAs"	Verified	chr12:697158-699497	697158-699497	99.2%	100.40	106.00	93.51	90.06	73.68	60.33	103.20	91.78	67.01	0.38	0.37	0.28	-0.45	-0.16	Matched[4019]
YLR278C		Zinc-cluster protein; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; mutant shows moderate growth defect on caffeine; YLR278C is not an essential gene	Uncharacterized	chr12:700001-704026	700001-704026	98.0%	117.62	130.80	101.40	97.85	95.06	114.58	124.21	99.62	104.82	0.46	0.40	0.43	0.07	0.65	Frag<80[4020,4021]
YLR279W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr12:704311-704700	704311-704700	98.5%	67.69	111.95	80.71	72.90	91.13	44.26	89.82	76.81	67.69	0.33	0.31	0.28	-0.18	0.17	Covered/w/another[4022]
YLR280C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr12:704485-704835	704485-704835	98.5%	66.50	78.06	80.95	49.15	78.06	49.15	72.28	65.05	63.61	0.27	0.26	0.26	-0.03	-0.64	Covered/w/another[4022]
YLR281C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to mitochondria; YLR281C is not an essential gene	Uncharacterized	chr12:704495-704962	704495-704962	98.7%	67.12	77.94	75.78	49.80	84.44	51.96	72.53	62.79	68.20	0.27	0.25	0.28	0.12	1.49	Covered/w/another[4022]
YLR283W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to mitochondria; YLR283W is not an essential gene	Uncharacterized	chr12:705188-706132	705188-706132	99.0%	80.21	141.16	88.76	93.04	192.50	137.96	110.69	90.90	165.23	0.41	0.37	0.68	0.86	0.57	Covered/w/another[4022]
YLR282C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr12:705073-705414	705073-705414	98.8%	47.34	68.06	53.26	35.51	94.69	82.85	57.70	44.38	88.77	0.21	0.18	0.37	1.00	-0.01	Covered/w/another[4022]
YLR284C	ECI1	"Peroxisomal delta3,delta2-enoyl-CoA isomerase, hexameric protein that converts 3-hexenoyl-CoA to trans-2-hexenoyl-CoA, essential for the beta-oxidation of unsaturated fatty acids, oleate-induced"	Verified	chr12:706200-707042	706200-707042	99.3%	72.85	81.21	65.69	74.05	127.79	71.66	77.03	69.87	99.73	0.28	0.28	0.41	0.51	0.17	Covered/w/another[4022]
YLR285W	NNT1	"Putative nicotinamide N-methyltransferase, has a role in rDNA silencing and in lifespan determination"	Verified	chr12:707362-708147	707362-708147	98.8%	366.99	242.09	316.77	242.09	181.56	145.51	304.54	279.43	163.54	1.12	1.13	0.68	-0.77	-0.37	Matched[4023]
YLR285C-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr12:708170-708340	708170-708340	98.8%	947.21	728.17	645.29	491.37	432.17	219.04	837.69	568.33	325.60	3.09	2.31	1.35	-0.80	NaN	Covered/w/another[4023]
YLR286W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene CTS1"	Dubious	chr12:708564-708698	708564-708698	99.3%	3461.61	3737.64	3103.51	2820.02	1917.31	1283.18	3599.63	2961.77	1600.25	13.29	12.02	6.63	-0.89	NaN	Covered/w/another[4024]
YLR286C	CTS1	"Endochitinase, required for cell separation after mitosis; transcriptional activation during late G and early M cell cycle phases is mediated by transcription factor Ace2p"	Verified	chr12:708450-710138	708450-710138	98.6%	2738.93	2966.52	2676.48	2384.63	1235.85	1107.34	2852.72	2530.55	1171.60	10.53	10.27	4.85	-1.11	-0.78	Matched[4024]
YLR287C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YLR287C is not an essential gene	Uncharacterized	chr12:710993-712060	710993-712060	99.4%	150.79	125.34	115.92	92.36	39.58	32.99	138.07	104.14	36.28	0.51	0.42	0.15	-1.52	-1.50	Matched[4026]
YLR287C-A	RPS30A	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps30Bp and has similarity to rat S30 ribosomal protein	Verified	chr12:712539-713160	712539-712727,713158-713160	55.6%	11171.28	10749.90	10628.17	8830.28	7294.58	5206.40	10960.59	9729.22	6250.49	40.46	39.49	25.90	-0.64	-2.31	Matched[4027]
YLR288C	MEC3	"DNA damage and meiotic pachytene checkpoint protein; subunit of a heterotrimeric complex (Rad17p-Mec3p-Ddc1p) that forms a sliding clamp, loaded onto partial duplex DNA by a clamp loader complex; homolog of human and S. pombe Hus1"	Verified	chr12:713482-714906	713482-714906	99.2%	61.54	62.96	50.93	38.91	76.40	50.22	62.25	44.92	63.31	0.23	0.18	0.26	0.50	0.63	Matched[4028]
YLR289W	GUF1	"Mitochondrial GTPase of unknown function, similar to E. coli elongation factor-type GTP-binding protein LepA and to LK1236.1 from Caenorhabditis elegans"	Verified	chr12:715091-717028	715091-717028	98.6%	51.81	45.01	53.91	46.06	86.88	65.94	48.41	49.98	76.41	0.18	0.20	0.32	0.61	0.60	Matched[4029]
YLR290C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YLR290C is not an essential gene"	Uncharacterized	chr12:717147-717980	717147-717980	99.2%	227.32	290.19	264.80	241.83	532.02	336.14	258.75	253.31	434.08	0.96	1.03	1.80	0.78	0.52	Matched[4030]
YLR291C	GCD7	"Beta subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression"	Verified	chr12:718319-719464	718319-719464	98.9%	309.55	255.75	288.38	268.10	161.39	144.63	282.65	278.24	153.01	1.04	1.13	0.63	-0.86	-0.39	Frag>80[4031,4032]
YLR292C	SEC72	"Non-essential subunit of Sec63 complex (Sec63p, Sec62p, Sec66p and Sec72p); with Sec61 complex, Kar2p/BiP and Lhs1p forms a channel competent for SRP-dependent and post-translational SRP-independent protein targeting and import into the ER"	Verified	chr12:719791-720372	719791-720372	99.2%	514.32	483.15	516.05	472.76	465.83	266.69	498.74	494.41	366.26	1.84	2.01	1.52	-0.43	-0.66	Matched[4033]
YLR293C	GSP1	"GTP binding protein (mammalian Ranp homolog) involved in the maintenance of nuclear organization, RNA processing and transport; regulated by Prp20p, Rna1p, Yrb1p, Yrb2p, Yrp4p, Yrb30p, Cse1p and Kap95p; yeast Gsp2p homolog"	Verified	chr12:720773-721432	720773-721432	95.8%	3018.78	2538.05	2541.21	2438.43	1378.93	1062.66	2778.41	2489.82	1220.79	10.26	10.11	5.06	-1.03	-0.71	Frag>80[4034,4035,4036]
YLR294C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene ATP14"	Dubious	chr12:721703-722032	721703-722032	99.0%	646.00	584.77	655.19	851.13	1145.04	823.57	615.38	753.16	984.31	2.27	3.06	4.08	0.39	0.33	Matched[4036]
YLR295C	ATP14	"Subunit h of the F0 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis"	Verified	chr12:722001-722375	722001-722375	98.9%	649.67	695.50	811.41	938.11	1318.21	1002.81	672.58	874.76	1160.51	2.48	3.55	4.81	0.41	0.31	Matched[4037]
YLR296W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr12:722980-723306	722980-723306	99.0%	0.00	12.35	3.09	12.35	3.09	3.09	6.18	7.72	3.09	0.02	0.03	0.01	-1.32	-0.08	
YLR297W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the vacuole; YLR297W is not an essential gene	Uncharacterized	chr12:724046-724435	724046-724435	98.7%	98.68	161.00	88.29	54.53	384.33	199.96	129.84	71.41	292.14	0.48	0.29	1.21	2.03	0.63	Covered/w/another[4039]
YLR298C	YHC1	"Component of the U1 snRNP complex required for pre-mRNA splicing; putative ortholog of human U1C protein, which is involved in formation of a complex between U1 snRNP and the pre-mRNA 5' splice site"	Verified	chr12:724723-725418	724723-725418	99.2%	196.95	159.30	170.88	186.81	270.80	183.91	178.12	178.85	227.36	0.66	0.73	0.94	0.35	0.60	Matched[4039]
YLR299W	ECM38	"Gamma-glutamyltranspeptidase, major glutathione-degrading enzyme; expression induced mainly by nitrogen starvation"	Verified	chr12:726071-728053	726071-728053	98.6%	142.73	162.68	145.28	118.68	146.31	102.82	152.70	131.98	124.57	0.56	0.54	0.52	-0.08	0.33	Matched[4040]
YLR299C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene ECM38"	Dubious	chr12:727913-728005	727913-728005	97.6%	231.40	198.35	231.40	198.35	396.69	176.31	214.88	214.88	286.50	0.79	0.87	1.19	0.42	NaN	Covered/w/another[4040]
YLR300W	EXG1	"Major exo-1,3-beta-glucanase of the cell wall, involved in cell wall beta-glucan assembly; exists as three differentially glycosylated isoenzymes"	Verified	chr12:728957-730303	728957-730303	98.8%	2187.35	2253.45	1783.23	1401.65	766.17	507.03	2220.40	1592.44	636.60	8.20	6.46	2.64	-1.32	-0.69	Matched[4041]
YLR301W		Protein of unknown function that interacts with Sec72p	Uncharacterized	chr12:730827-731561	730827-731561	98.7%	897.05	792.33	788.20	773.04	1473.04	901.19	844.69	780.62	1187.12	3.12	3.17	4.92	0.60	0.32	Matched[4042]
YLR303W	MET17	"Methionine and cysteine synthase (O-acetyl homoserine-O-acetyl serine sulfhydrylase), required for sulfur amino acid synthesis"	Verified	chr12:732544-733878	732544-733878	99.0%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.01	
YLR302C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr12:732193-732555	732193-732555	98.7%	0.00	0.00	2.79	2.79	0.00	0.00	0.00	2.79	0.00	0.00	0.01	0.00	-Inf	-0.45	
YLR304C	ACO1	"Aconitase, required for the tricarboxylic acid (TCA) cycle and also independently required for mitochondrial genome maintenance; phosphorylated; component of the mitochondrial nucleoid; mutation leads to glutamate auxotrophy"	Verified	chr12:735214-737550	735214-737550	98.9%	944.53	1634.34	1059.14	1349.77	1386.96	1604.93	1289.44	1204.45	1495.95	4.76	4.89	6.20	0.31	0.31	Frag>80[4043,4044]
YLR305C	STT4	"Phosphatidylinositol-4-kinase that functions in the Pkc1p protein kinase pathway; required for normal vacuole morphology, cell wall integrity, and actin cytoskeleton organization"	Verified	chr12:738163-743865	738163-743865	98.9%	120.35	117.87	102.09	84.01	60.09	77.81	119.11	93.05	68.95	0.44	0.38	0.29	-0.43	0.18	Frag>80[4045,4046,4047,4048]
YLR306W	UBC12	"Enzyme that mediates the conjugation of Rub1p, a ubiquitin-like protein, to other proteins; related to E2 ubiquitin-conjugating enzymes"	Verified	chr12:744153-744853	744153-744155,744290-744853	98.8%	133.87	182.06	91.03	121.37	189.20	116.02	157.97	106.20	152.61	0.58	0.43	0.63	0.52	0.45	Frag>80[4048,4049]
YLR307W	CDA1	"Chitin deacetylase, together with Cda2p involved in the biosynthesis ascospore wall component, chitosan; required for proper rigidity of the ascospore wall"	Verified	chr12:745622-746527	745622-746527	98.7%	14.54	5.59	10.06	4.47	21.24	15.65	10.06	7.27	18.45	0.04	0.03	0.08	1.34	0.86	
YLR307C-A		Putative protein of unknown function	Uncharacterized	chr12:746850-747113	746850-747113	99.3%	3.81	0.00	0.00	0.00	15.25	3.81	1.91	0.00	9.53	0.01	0.00	0.04	Inf	NaN	
YLR308W	CDA2	"Chitin deacetylase, together with Cda1p involved in the biosynthesis ascospore wall component, chitosan; required for proper rigidity of the ascospore wall"	Verified	chr12:747939-748877	747939-748877	98.9%	1.08	0.00	1.08	1.08	4.31	0.00	0.54	1.08	2.15	0.00	0.00	0.01	1.00	0.69	Overlap[4050]
YLR309C	IMH1	"Protein involved in vesicular transport, mediates transport between an endosomal compartment and the Golgi, contains a Golgi-localization (GRIP) domain that interacts with activated Arl1p-GTP to localize Imh1p to the Golgi"	Verified	chr12:749036-751771	749036-751771	99.5%	252.64	231.71	206.00	216.65	321.31	283.12	242.17	211.33	302.21	0.89	0.86	1.25	0.52	0.65	Matched[4050]
YLR310C	CDC25	Membrane bound guanine nucleotide exchange factor (GEF or GDP-release factor); indirectly regulates adenylate cyclase through activation of Ras1p and Ras2p by stimulating the exchange of GDP for GTP; required for progression through G1	Verified	chr12:752226-756995	752226-756995	99.1%	164.34	162.22	157.99	162.01	80.79	113.79	163.28	160.00	97.29	0.60	0.65	0.40	-0.72	0.16	Covered/w/another[4051]
YLR311C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr12:757267-757614	757267-757614	98.6%	8.74	5.83	20.40	26.22	104.89	20.40	7.28	23.31	62.64	0.03	0.09	0.26	1.43	1.04	Covered/w/another[4051]
YLR312C		Protein of unknown function; null mutant quiescent and non-quiescent cells exhibit reduced reproductive capacity	Uncharacterized	chr12:757639-758835	757639-758835	99.2%	22.73	16.84	33.67	22.73	80.81	37.04	19.78	28.20	58.92	0.07	0.11	0.24	1.06	0.87	Covered/w/another[4051]
YLR312W-A	MRPL15	Mitochondrial ribosomal protein of the large subunit	Verified	chr12:759482-760243	759482-760243	98.7%	228.75	206.14	254.02	199.49	231.41	151.61	217.44	226.75	191.51	0.80	0.92	0.79	-0.24	-0.54	Matched[4052]
YLR313C	SPH1	"Protein involved in shmoo formation and bipolar bud site selection; homologous to Spa2p, localizes to sites of polarized growth in a cell cycle dependent- and Spa2p-dependent manner, interacts with MAPKKs Mkk1p, Mkk2p, and Ste7p"	Verified	chr12:760357-762342	760357-762342	99.1%	58.40	61.45	50.28	41.64	35.55	27.93	59.93	45.96	31.74	0.22	0.19	0.13	-0.53	-0.30	Matched[4053]
YLR314C	CDC3	"Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recruit proteins to the neck and can act as a barrier to diffusion at the membrane, and they comprise the 10nm filaments seen with EM"	Verified	chr12:762575-764137	762575-764137	99.3%	570.78	497.34	626.19	574.65	631.34	521.82	534.06	600.42	576.58	1.97	2.44	2.39	-0.06	0.25	Matched[4054]
YLR315W	NKP2	"Non-essential kinetochore protein, subunit of the Ctf19 central kinetochore complex (Ctf19p-Mcm21p-Okp1p-Mcm22p-Mcm16p-Ctf3p-Chl4p-Mcm19p-Nkp1p-Nkp2p-Ame1p-Mtw1p)"	Verified	chr12:764808-765269	764808-765269	98.6%	76.82	57.07	28.53	43.90	61.46	41.70	66.95	36.22	51.58	0.25	0.15	0.21	0.51	0.47	Matched[4055]
YLR317W		Dubious open reading frame; may be part of a bicistronic transcript with NKP2/YLR315W; overlaps the verified ORF TAD3/YLR316C	Dubious	chr12:765655-766089	765655-766089	99.2%	143.62	192.26	155.20	113.50	159.83	64.86	167.94	134.35	112.34	0.62	0.55	0.47	-0.26	0.62	Matched[4056]
YLR316C	TAD3	"Subunit of tRNA-specific adenosine-34 deaminase, forms a heterodimer with Tad2p that converts adenosine to inosine at the wobble position of several tRNAs"	Verified	chr12:765266-766358	765266-766073,766130-766181,766250-766358	99.2%	151.96	162.37	137.39	106.16	136.35	67.65	157.16	121.77	102.00	0.58	0.49	0.42	-0.26	-0.92	Matched[4056]
YLR318W	EST2	"Reverse transcriptase subunit of the telomerase holoenzyme, essential for telomerase core catalytic activity, involved in other aspects of telomerase assembly and function; mutations in human homolog are associated with aplastic anemia"	Verified	chr12:766542-769196	766542-769196	99.2%	36.08	35.70	26.20	20.13	19.37	15.57	35.89	23.17	17.47	0.13	0.09	0.07	-0.41	-1.02	Matched[4057]
YLR319C	BUD6	"Actin- and formin-interacting protein, involved in actin cable nucleation and polarized cell growth; isolated as bipolar budding mutant; potential Cdc28p substrate"	Verified	chr12:769318-771684	769318-771684	99.3%	104.26	108.94	91.92	82.56	62.56	49.37	106.60	87.24	55.96	0.39	0.35	0.23	-0.64	-0.39	Matched[4058]
YLR320W	MMS22	Protein involved in resistance to ionizing radiation; acts with Mms1p in a repair pathway that may be involved in resolving replication intermediates or preventing the damage caused by blocked replication forks	Verified	chr12:771940-776304	771940-776304	98.9%	37.06	33.36	33.82	19.46	24.56	28.03	35.21	26.64	26.29	0.13	0.11	0.11	-0.02	0.13	Frag<80[4059]
YLR322W	VPS65	"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; 75% of ORF overlaps the verified gene SFH1; deletion causes a vacuolar protein sorting defect"	Dubious	chr12:777628-777942	777628-777942	99.4%	137.38	121.41	111.82	83.07	44.73	54.31	129.39	97.44	49.52	0.48	0.40	0.21	-0.98	-0.05	Covered/w/another[4060]
YLR321C	SFH1	Component of the RSC chromatin remodeling complex; essential gene required for cell cycle progressionand maintenance of proper ploidy; phosphorylated in the G1 phase of the cell cycle; Snf5p paralog	Verified	chr12:776584-777864	776584-777864	99.2%	221.99	197.59	183.42	160.59	123.59	100.76	209.79	172.00	112.18	0.77	0.70	0.46	-0.62	-0.11	Covered/w/another[4060]
YLR323C	CWC24	"Essential protein, component of a complex containing Cef1p; has similarity to S. pombe Cwf24p"	Verified	chr12:778173-778952	778173-778952	99.3%	64.54	65.83	46.47	45.18	37.44	18.07	65.19	45.83	27.75	0.24	0.19	0.11	-0.72	-0.14	Covered/w/another[4060]
YLR324W	PEX30	"Peroxisomal integral membrane protein, involved in negative regulation of peroxisome number; partially functionally redundant with Pex31p; genetic interactions suggest action at a step downstream of steps mediated by Pex28p and Pex29p"	Verified	chr12:779215-780786	779215-780786	98.4%	131.29	155.86	141.63	146.81	278.09	236.70	143.57	144.22	257.40	0.53	0.59	1.07	0.84	0.93	Matched[4061]
YLR325C	RPL38	"Protein component of the large (60S) ribosomal subunit, has similarity to rat L38 ribosomal protein"	Verified	chr12:781143-781379	781143-781379	99.2%	11162.30	8411.06	9291.28	8687.46	2734.23	2661.94	9786.68	8989.37	2698.09	36.13	36.49	11.18	-1.74	-4.27	Matched[4062]
YLR326W		Hypothetical protein	Uncharacterized	chr12:782174-782896	782174-782896	98.4%	61.86	123.71	77.32	64.67	154.64	84.35	92.78	70.99	119.49	0.34	0.29	0.50	0.75	0.94	Matched[4063]
YLR327C	TMA10	Protein of unknown function that associates with ribosomes	Verified	chr12:783127-783387	783127-783387	99.2%	115.90	204.76	610.43	567.93	17532.52	6992.92	160.33	589.18	12262.72	0.59	2.39	50.81	4.38	3.00	Matched[4064]
YLR328W	NMA1	"Nicotinic acid mononucleotide adenylyltransferase, involved in NAD(+) salvage pathway"	Verified	chr12:784913-786118	784913-786118	98.9%	169.42	114.06	139.22	127.48	112.38	84.71	141.74	133.35	98.55	0.52	0.54	0.41	-0.44	-0.12	Matched[4065]
YLR329W	REC102	Protein involved in early stages of meiotic recombination; required for chromosome synapsis; forms a complex with Rec104p and Spo11p necessary during the initiation of recombination	Verified	chr12:786442-787333	786442-786615,786713-787333	99.0%	13.98	13.98	10.16	7.62	25.41	21.60	13.98	8.89	23.51	0.05	0.04	0.10	1.40	0.09	Frag<80[4066]
YLR330W	CHS5	"Protein involved in export from the Golgi to plasma membrane; involved in chitin biosynthesis through its role in Chs3p localization; interacts with Arf1p, Bch1p, Fmp50p, Bud7p, and Chs6p"	Verified	chr12:787664-789679	787664-789679	94.1%	546.66	547.19	553.52	580.40	611.51	492.37	546.93	566.96	551.94	2.02	2.30	2.29	-0.04	0.10	Frag>80[4067,4068]
YLR332W	MID2	"O-glycosylated plasma membrane protein that acts as a sensor for cell wall integrity signaling and activates the pathway; interacts with Rom2p, a guanine nucleotide exchange factor for Rho1p, and with cell integrity pathway protein Zeo1p"	Verified	chr12:790676-791806	790676-791806	99.2%	263.06	209.56	243.44	223.82	230.07	171.21	236.31	233.63	200.64	0.87	0.95	0.83	-0.22	0.56	Frag>80[4069,4070,4071]
YLR331C	JIP3	"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; 98% of ORF overlaps the verified gene MID2"	Dubious	chr12:790669-791046	790669-791046	99.6%	284.32	204.61	255.09	225.86	233.84	191.32	244.46	240.48	212.58	0.90	0.98	0.88	-0.18	0.31	Matched[4069]
YLR333C	RPS25B	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps25Ap and has similarity to rat S25 ribosomal protein	Verified	chr12:795573-796336	795573-795912,796335-796336	76.0%	3794.13	3163.06	3039.92	2543.53	1408.37	854.26	3478.60	2791.73	1131.31	12.84	11.33	4.69	-1.30	-1.39	Matched[4075]
YLR334C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps a stand-alone long terminal repeat sequence whose presence indicates a retrotransposition event occurred here"	Dubious	chr12:796698-797078	796698-797078	85.3%	3.08	0.00	0.00	0.00	9.23	0.00	1.54	0.00	4.61	0.01	0.00	0.02	Inf	-0.06	
YLR335W	NUP2	"Nucleoporin involved in nucleocytoplasmic transport, binds to either the nucleoplasmic or cytoplasmic faces of the nuclear pore complex depending on Ran-GTP levels; also has a role in chromatin organization"	Verified	chr12:797430-799592	797430-799592	98.6%	440.55	383.37	399.77	377.28	269.48	268.08	411.96	388.53	268.78	1.52	1.58	1.11	-0.53	-0.02	Matched[4076]
YLR336C	SGD1	Essential nuclear protein with a possible role in the osmoregulatory glycerol response; interacts with phospholipase C (Plc1p); putative homolog of human NOM1 which is implicated in acute myeloid leukemia	Verified	chr12:799697-802396	799697-802396	99.4%	93.94	65.61	49.95	44.36	17.52	11.93	79.77	47.16	14.72	0.29	0.19	0.06	-1.68	-1.32	Matched[4077]
YLR338W	OPI9	"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF VRP1/YLR337C"	Dubious	chr12:804346-805203	804346-805203	98.1%	131.93	159.26	171.15	135.49	215.12	373.20	145.60	153.32	294.16	0.54	0.62	1.22	0.94	0.82	Covered/w/another[4078]
YLR337C	VRP1	Proline-rich actin-associated protein involved in cytoskeletal organization and cytokinesis; related to mammalian Wiskott-Aldrich syndrome protein (WASP)-interacting protein (WIP)	Verified	chr12:802653-805106	802653-805106	98.0%	202.51	244.51	252.41	199.60	359.69	499.83	223.51	226.00	429.76	0.83	0.92	1.78	0.93	1.29	Matched[4078]
YLR340W	RPP0	"Conserved ribosomal protein P0 similar to rat P0, human P0, and E. coli L10e; shown to be phosphorylated on serine 302"	Verified	chr12:805887-806825	805887-806825	97.5%	12964.68	11638.38	11746.54	10210.49	4638.75	3829.21	12301.53	10978.51	4233.98	45.41	44.56	17.54	-1.37	-1.96	Matched[4079]
YLR339C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the essential gene RPP0"	Dubious	chr12:805784-806335	805784-806335	98.6%	9278.24	8394.86	8550.96	7673.09	3287.42	2890.73	8836.55	8112.03	3089.07	32.62	32.93	12.80	-1.39	-0.03	Matched[4079]
YLR341W	SPO77	"Meiosis-specific protein of unknown function, required for spore wall formation during sporulation; dispensable for both nuclear divisions during meiosis"	Verified	chr12:807385-808818	807385-808818	99.0%	16.21	10.57	13.39	7.75	33.12	18.32	13.39	10.57	25.72	0.05	0.04	0.11	1.28	-0.82	Frag<80[4080]
YLR342W	FKS1	"Catalytic subunit of 1,3-beta-D-glucan synthase, functionally redundant with alternate catalytic subunit Gsc2p; binds to regulatory subunit Rho1p; involved in cell wall synthesis and maintenance; localizes to sites of cell wall remodeling"	Verified	chr12:809997-815627	809997-815627	96.8%	888.03	833.72	770.97	734.09	183.29	300.17	860.87	752.53	241.73	3.18	3.05	1.00	-1.64	-1.06	Frag>80[4081,4082,4083]
YLR342W-A		Putative protein of unknown function	Uncharacterized	chr12:815810-815983	815810-815983	99.2%	423.09	446.27	208.65	237.62	52.16	52.16	434.68	223.13	52.16	1.60	0.91	0.22	-2.10	NaN	Matched[4083]
YLR343W	GAS2	"1,3-beta-glucanosyltransferase, involved with Gas4p in spore wall assembly; has similarity to Gas1p"	Verified	chr12:816094-817761	816094-817761	98.8%	199.11	272.56	139.62	88.02	46.14	19.43	235.84	113.82	32.78	0.87	0.46	0.14	-1.80	-1.08	Frag>80[4083,4084,4085]
YLR344W	RPL26A	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl26Bp and has similarity to E. coli L24 and rat L26 ribosomal proteins; binds to 5.8S rRNA"	Verified	chr12:819312-820142	819312-819330,819778-820142	71.7%	4044.21	3168.51	3386.53	2565.33	1111.88	624.98	3606.36	2975.93	868.43	13.31	12.08	3.60	-1.78	-2.54	Matched[4086]
YLR345W		"Similar to 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase enzymes responsible for the metabolism of fructoso-2,6-bisphosphate; mRNA expression is repressed by the Rfx1p-Tup1p-Ssn6p repressor complex; YLR345W is not an essential gene"	Uncharacterized	chr12:820511-822040	820511-822040	98.7%	126.46	217.83	217.16	253.58	471.41	309.86	172.14	235.37	390.63	0.64	0.96	1.62	0.73	0.90	Matched[4087]
YLR346C		"Putative protein of unknown function found in mitochondria; expression is regulated by transcription factors involved in pleiotropic drug resistance, Pdr1p and Yrr1p; YLR346C is not an essential gene"	Uncharacterized	chr12:822287-822592	822287-822592	99.4%	39.44	82.16	88.73	39.44	167.60	95.30	60.80	64.08	131.45	0.22	0.26	0.54	1.04	0.58	Matched[4088]
YLR347W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified ORF KAP95/YLR347C"	Dubious	chr12:824788-824928	824788-824928	98.1%	252.94	130.08	267.39	173.44	274.62	361.34	191.51	220.42	317.98	0.71	0.89	1.32	0.53	NaN	Covered/w/another[4090]
YLR347C	KAP95	"Karyopherin beta, forms a dimeric complex with Srp1p (Kap60p) that mediates nuclear import of cargo proteins via a nuclear localization signal (NLS), interacts with nucleoporins to guide transport across the nuclear pore complex"	Verified	chr12:823827-826412	823827-826412	98.9%	231.46	175.94	187.28	160.69	231.85	283.46	203.70	173.99	257.66	0.75	0.71	1.07	0.57	1.17	Matched[4090]
YLR349W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified ORF DIC1/YLR348C"	Dubious	chr12:827520-828026	827520-828026	98.9%	167.50	199.40	229.31	175.47	346.96	245.26	183.45	202.39	296.11	0.68	0.82	1.23	0.55	0.36	Frag>80[4091,4092,4093]
YLR348C	DIC1	"Mitochondrial dicarboxylate carrier, integral membrane protein, catalyzes a dicarboxylate-phosphate exchange across the inner mitochondrial membrane, transports cytoplasmic dicarboxylates into the mitochondrial matrix"	Verified	chr12:826976-827872	826976-827872	98.8%	270.82	313.70	368.99	267.43	580.00	388.17	292.26	318.21	484.08	1.08	1.29	2.01	0.61	0.49	Matched[4091]
YLR350W	ORM2	"Evolutionarily conserved protein with similarity to Orm1p, required for resistance to agents that induce the unfolded protein response; human ortholog is located in the endoplasmic reticulum"	Verified	chr12:828729-829379	828729-829379	98.8%	329.66	307.89	416.74	329.66	945.45	673.32	318.78	373.20	809.38	1.18	1.51	3.35	1.12	1.15	Matched[4094]
YLR351C	NIT3	"Nit protein, one of two proteins in S. cerevisiae with similarity to the Nit domain of NitFhit from fly and worm and to the mouse and human Nit protein which interacts with the Fhit tumor suppressor; nitrilase superfamily member"	Verified	chr12:829488-830363	829488-830363	99.0%	527.05	574.34	506.30	501.68	375.97	276.79	550.70	503.99	326.38	2.03	2.05	1.35	-0.63	-0.05	Matched[4095]
YLR352W		Putative protein of unknown function with similarity to F-box proteins; interacts with Skp1p and Cdc53p; YLR352W is not an essential gene	Uncharacterized	chr12:831115-833538	831115-833538	99.0%	70.81	68.73	59.57	51.23	88.72	94.14	69.77	55.40	91.43	0.26	0.22	0.38	0.72	1.38	Covered/w/another[4096]
YLR353W	BUD8	"Protein involved in bud-site selection; diploid mutants display a unipolar budding pattern instead of the wild-type bipolar pattern, and bud at the proximal pole"	Verified	chr12:834351-836162	834351-836162	98.5%	140.03	151.79	140.59	107.54	95.78	84.02	145.91	124.07	89.90	0.54	0.50	0.37	-0.46	-0.38	Covered/w/another[4096]
YLR354C	TAL1	"Transaldolase, enzyme in the non-oxidative pentose phosphate pathway; converts sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate to erythrose 4-phosphate and fructose 6-phosphate"	Verified	chr12:836349-837356	836349-837356	98.8%	2683.62	3246.85	2645.47	2595.27	2057.14	1710.77	2965.24	2620.37	1883.96	10.95	10.64	7.81	-0.48	-0.03	Frag>80[4097,4098,4099,4100]
YLR355C	ILV5	"Acetohydroxyacid reductoisomerase, mitochondrial protein involved in branched-chain amino acid biosynthesis, also required for maintenance of wild-type mitochondrial DNA and found in mitochondrial nucleoids"	Verified	chr12:838065-839252	838065-839252	98.6%	3618.49	3416.13	3638.98	2297.63	498.63	191.26	3517.31	2968.30	344.94	12.98	12.05	1.43	-3.11	-3.31	Matched[4101]
YLR356W		Putative protein of unknown function with similarity to SCM4; green fluorescent protein (GFP)-fusion protein localizes to mitochondria; YLR356W is not an essential gene	Uncharacterized	chr12:840320-840913	840320-840913	99.0%	214.27	323.11	251.68	311.20	719.34	734.64	268.69	281.44	726.99	0.99	1.14	3.01	1.37	1.40	Matched[4102]
YLR357W	RSC2	Component of the RSC chromatin remodeling complex; required for expression of mid-late sporulation-specific genes; involved in telomere maintenance	Verified	chr12:841330-843999	841330-843999	98.7%	185.95	171.91	147.62	138.13	74.76	72.86	178.93	142.88	73.81	0.66	0.58	0.31	-0.95	-0.27	Matched[4103]
YLR358C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF RSC2/YLR357W"	Dubious	chr12:843486-844049	843486-844049	98.5%	318.61	244.81	230.41	203.41	133.20	117.00	281.71	216.91	125.10	1.04	0.88	0.52	-0.79	-0.58	Covered/w/another[4103]
YLR359W	ADE13	"Adenylosuccinate lyase, catalyzes two steps in the 'de novo' purine nucleotide biosynthetic pathway; expression is repressed by adenine and activated by Bas1p and Pho2p; mutations in human ortholog ADSL cause adenylosuccinase deficiency"	Verified	chr12:844281-845729	844281-845729	98.8%	3879.85	2951.45	3625.57	3191.06	523.93	260.57	3415.65	3408.31	392.25	12.61	13.83	1.63	-3.12	-3.34	Matched[4104]
YLR360W	VPS38	Part of a Vps34p phosphatidylinositol 3-kinase complex that functions in carboxypeptidase Y (CPY) sorting; binds Vps30p and Vps34p to promote production of phosphatidylinositol 3-phosphate (PtdIns3P) which stimulates kinase activity	Verified	chr12:846102-847421	846102-847421	99.0%	117.07	137.73	115.54	117.07	255.57	156.10	127.40	116.31	205.83	0.47	0.47	0.85	0.82	0.53	Matched[4105]
YLR361C	DCR2	"Phosphoesterase involved in downregulation of the unfolded protein response, at least in part via dephosphorylation of Ire1p; dosage-dependent positive regulator of the G1/S phase transition through control of the timing of START"	Verified	chr12:847387-849123	847387-849123	99.2%	60.96	79.54	64.45	49.35	89.99	83.61	70.25	56.90	86.80	0.26	0.23	0.36	0.61	0.56	Matched[4106]
YLR361C-A		Putative protein of unknown function	Uncharacterized	chr12:849382-849678	849382-849678	99.3%	135.63	179.71	186.49	213.62	325.52	193.27	157.67	200.06	259.40	0.58	0.81	1.07	0.37	NaN	Matched[4107]
YLR362W	STE11	"Signal transducing MEK kinase involved in pheromone response and pseudohyphal/invasive growth pathways where it phosphorylates Ste7p, and the high osmolarity response pathway, via phosphorylation of Pbs2p; regulated by Ste20p and Ste50p"	Verified	chr12:849865-852018	849865-852018	98.7%	64.43	63.49	68.67	54.09	79.01	60.67	63.96	61.38	69.84	0.24	0.25	0.29	0.19	0.69	Matched[4108]
YLR363C	NMD4	"Protein interacting with Nam7p, may be involved in the nonsense-mediated mRNA decay pathway"	Verified	chr12:852494-853150	852494-853150	99.5%	139.21	154.51	162.16	162.16	195.82	183.58	146.86	162.16	189.70	0.54	0.66	0.79	0.23	0.39	Matched[4109]
YLR363W-A		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus	Uncharacterized	chr12:853460-853717	853460-853717	98.3%	264.26	145.93	165.65	157.76	39.44	3.94	205.09	161.71	21.69	0.76	0.66	0.09	-2.90	-2.26	Matched[4110]
YLR364W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YLR364W is not an essential gene	Uncharacterized	chr12:854061-854390	854061-854390	98.6%	70.71	98.37	73.78	52.26	52.26	64.56	84.54	63.02	58.41	0.31	0.26	0.24	-0.11	-0.29	Matched[4111]
YLR365W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps dubious gene YLR364C-A; YLR365W is not an essential gene"	Dubious	chr12:855198-855530	855198-855530	99.3%	3.03	3.03	0.00	0.00	0.00	0.00	3.03	0.00	0.00	0.01	0.00	0.00	NaN	0.16	
YLR366W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF YLR364C-A"	Dubious	chr12:855537-855842	855537-855842	99.1%	23.09	29.69	26.39	16.49	26.39	13.20	26.39	21.44	19.79	0.10	0.09	0.08	-0.12	NaN	Overlap[4112]
YLR364C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF YLR366W"	Dubious	chr12:855522-855644	855522-855644	98.7%	0.00	0.00	0.00	0.00	0.00	8.24	0.00	0.00	4.12	0.00	0.00	0.02	Inf	NaN	
YLR367W	RPS22B	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps22Ap and has similarity to E. coli S8 and rat S15a ribosomal proteins	Verified	chr12:855876-857316	855876-855877,856434-856573,857057-857316	84.1%	2381.36	1842.97	2203.87	1502.77	1227.66	704.06	2112.17	1853.32	965.86	7.80	7.52	4.00	-0.94	-1.63	Matched[4112]
YLR368W	MDM30	"F-box protein; physically associates with mitochondria and is required for normal mitochondrial fusion in rich medium, during sporulation, and in mating cells; promotes ubiquitin-mediated degradation of Gal4p in some strains"	Verified	chr12:857539-859335	857539-859335	98.8%	80.53	79.40	68.70	59.13	98.55	62.51	79.97	63.92	80.53	0.30	0.26	0.33	0.33	0.40	Covered/w/another[4113]
YLR369W	SSQ1	"Mitochondrial hsp70-type molecular chaperone, required for assembly of iron/sulfur clusters into proteins at a step after cluster synthesis, and for maturation of Yfh1p, which is a homolog of human frataxin implicated in Friedreich's ataxia"	Verified	chr12:859551-861524	859551-861524	98.7%	66.75	70.86	68.81	64.18	126.83	96.53	68.81	66.50	111.68	0.25	0.27	0.46	0.75	0.86	Covered/w/another[4113]
YLR370C	ARC18	"Subunit of the ARP2/3 complex, which is required for the motility and integrity of cortical actin patches"	Verified	chr12:861717-862253	861717-862253	98.6%	596.74	668.50	628.85	649.62	1229.36	787.47	632.62	639.23	1008.42	2.34	2.59	4.18	0.66	0.64	Matched[4114]
YLR371W	ROM2	"GDP/GTP exchange protein (GEP) for Rho1p and Rho2p; mutations are synthetically lethal with mutations in rom1, which also encodes a GEP"	Verified	chr12:862713-866783	862713-866783	98.8%	117.87	116.63	93.25	92.26	138.76	127.32	117.25	92.75	133.04	0.43	0.38	0.55	0.52	0.66	Matched[4115]
YLR372W	SUR4	"Elongase, involved in fatty acid and sphingolipid biosynthesis; synthesizes very long chain 20-26-carbon fatty acids from C18-CoA primers; involved in regulation of sphingolipid biosynthesis"	Verified	chr12:867353-868390	867353-868390	99.1%	1642.17	1334.14	1416.74	1345.80	282.76	194.34	1488.16	1381.27	238.55	5.49	5.61	0.99	-2.53	-2.17	Matched[4116]
YLR373C	VID22	"Glycosylated integral membrane protein localized to the plasma membrane; plays a role in fructose-1,6-bisphosphatase (FBPase) degradation; involved in FBPase transport from the cytosol to Vid (vacuole import and degradation) vesicles"	Verified	chr12:868661-871366	868661-871366	99.0%	106.79	101.19	92.98	82.90	85.88	77.29	103.99	87.94	81.59	0.38	0.36	0.34	-0.11	0.03	Matched[4117]
YLR375W	STP3	"Zinc-finger protein of unknown function, possibly involved in pre-tRNA splicing and in uptake of branched-chain amino acids"	Verified	chr12:871696-872727	871696-872727	98.7%	395.70	421.22	302.42	241.54	306.35	197.36	408.46	271.98	251.85	1.51	1.10	1.04	-0.11	0.24	Matched[4118]
YLR374C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF STP3/YLR375W"	Dubious	chr12:871452-871841	871452-871841	98.4%	99.07	122.53	78.21	80.82	54.75	62.57	110.80	79.51	58.66	0.41	0.32	0.24	-0.44	1.13	Covered/w/another[4118]
YLR376C	PSY3	Protein of unknown function; deletion results in a mutator phenotype suggesting a role for this protein as a mutational suppressor; deletion increases sensitivity to anticancer drugs oxaliplatin and cisplatin but not mitomycin C	Verified	chr12:872825-873553	872825-873553	99.3%	87.05	88.43	82.90	80.14	114.68	64.94	87.74	81.52	89.81	0.32	0.33	0.37	0.14	-0.07	Matched[4119]
YLR377C	FBP1	"Fructose-1,6-bisphosphatase, key regulatory enzyme in the gluconeogenesis pathway, required for glucose metabolism"	Verified	chr12:873745-874791	873745-874791	98.8%	17.40	19.33	17.40	14.50	34.80	25.13	18.37	15.95	29.96	0.07	0.06	0.12	0.91	-0.17	Frag>80[4120]
YLR379W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the essential ORF SEC61/YLR378C"	Dubious	chr12:876921-877295	876921-877295	98.3%	811.31	746.18	852.01	770.60	466.70	662.07	778.75	811.31	564.39	2.87	3.29	2.34	-0.52	0.04	Covered/w/another[4122]
YLR378C	SEC61	"Essential subunit of Sec61 complex (Sec61p, Sbh1p, and Sss1p); forms a channel for SRP-dependent protein import and retrograde transport of misfolded proteins out of the ER; with Sec63 complex allows SRP-independent protein import into ER"	Verified	chr12:875735-877177	875735-877177	98.3%	1252.99	1087.39	1221.28	1047.92	817.48	856.94	1170.19	1134.60	837.21	4.32	4.61	3.47	-0.44	-0.16	Frag>80[4121,4122]
YLR380W	CSR1	Phosphatidylinositol transfer protein with a potential role in lipid turnover; interacts specifically with thioredoxin peroxidase (Tsa2p) and may have a role in oxidative stress resistance	Verified	chr12:878282-879508	878282-879508	98.7%	274.90	307.93	254.27	234.45	222.89	251.79	291.41	244.36	237.34	1.08	0.99	0.98	-0.04	0.63	Matched[4123]
YLR381W	CTF3	Outer kinetochore protein that forms a complex with Mcm16p and Mcm22p; may bind the kinetochore to spindle microtubules	Verified	chr12:879723-881924	879723-881924	99.1%	57.73	60.94	40.32	45.82	48.11	36.20	59.33	43.07	42.15	0.22	0.17	0.17	-0.03	-0.06	Matched[4124]
YLR382C	NAM2	"Mitochondrial leucyl-tRNA synthetase, also has a direct role in splicing of several mitochondrial group I introns; indirectly required for mitochondrial genome maintenance"	Verified	chr12:882067-884751	882067-884751	99.1%	105.97	119.12	109.35	93.57	99.96	104.84	112.54	101.46	102.40	0.42	0.41	0.42	0.01	0.52	Matched[4125]
YLR383W	SMC6	"Protein involved in structural maintenance of chromosomes; essential subunit of Mms21-Smc5-Smc6 complex; required for growth, DNA repair, interchromosomal and sister chromatid recombination; homologous to S. pombe rad18"	Verified	chr12:885288-888632	885288-888632	98.4%	104.77	89.89	93.23	78.04	43.73	36.74	97.33	85.63	40.24	0.36	0.35	0.17	-1.09	-0.61	Matched[4126]
YLR384C	IKI3	"Subunit of Elongator complex, which is required for modification of wobble nucleosides in tRNA; maintains structural integrity of Elongator; homolog of human IKAP, mutations in which cause familial dysautonomia (FD)"	Verified	chr12:888851-892900	888851-892900	99.2%	219.06	154.34	169.02	138.41	38.09	27.38	186.70	153.72	32.73	0.69	0.62	0.14	-2.23	-1.47	Frag>80[4127,4128]
YLR385C	SWC7	"Protein of unknown function, component of the Swr1p complex that incorporates Htz1p into chromatin"	Verified	chr12:892992-893390	892992-893390	99.1%	15.17	12.64	15.17	10.11	2.53	0.00	13.91	12.64	1.26	0.05	0.05	0.01	-3.32	-0.79	
YLR386W	VAC14	"Protein involved in regulated synthesis of PtdIns(3,5)P(2), in control of trafficking of some proteins to the vacuole lumen via the MVB, and in maintenance of vacuole size and acidity; interacts with Fig4p; activator of Fab1p"	Verified	chr12:893628-896270	893628-896270	98.9%	103.30	87.99	85.32	85.32	86.08	73.84	95.64	85.32	79.96	0.35	0.35	0.33	-0.09	0.28	Matched[4129]
YLR387C	REH1	"Protein of unknown function, similar to Rei1p but not involved in bud growth; contains dispersed C2H2 zinc finger domains"	Verified	chr12:896374-897672	896374-897672	99.2%	176.13	155.96	185.45	178.46	277.78	164.50	166.05	181.95	221.14	0.61	0.74	0.92	0.28	0.45	Matched[4130]
YLR388W	RPS29A	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps29Bp and has similarity to rat S29 and E. coli S14 ribosomal proteins	Verified	chr12:898157-898821	898157-898158,898646-898821	82.0%	5123.29	4034.25	4671.23	3643.84	1383.56	938.36	4578.77	4157.53	1160.96	16.90	16.88	4.81	-1.84	-3.08	Matched[4131]
YLR389C	STE23	"Metalloprotease involved, with homolog Axl1p, in N-terminal processing of pro-a-factor to the mature form; member of the insulin-degrading enzyme family"	Verified	chr12:899577-902660	899577-902660	99.0%	181.50	185.10	141.53	151.36	82.23	66.83	183.30	146.45	74.53	0.68	0.59	0.31	-0.97	-0.39	Frag>80[4132,4133]
YLR390W	ECM19	"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr12:903066-903404	903066-903404	98.8%	203.01	220.92	220.92	194.05	232.86	101.51	211.97	207.49	167.18	0.78	0.84	0.69	-0.31	0.06	Matched[4134]
YLR390W-A	CCW14	"Covalently linked cell wall glycoprotein, present in the inner layer of the cell wall"	Verified	chr12:903724-904440	903724-904440	95.4%	2749.66	3011.33	2711.66	2505.54	2618.10	2096.24	2880.50	2608.60	2357.17	10.63	10.59	9.77	-0.15	0.14	Matched[4135]
YLR392C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YLR392C is not an essential gene	Uncharacterized	chr12:904749-906305	904749-906305	99.3%	65.31	67.90	74.37	74.37	166.20	93.77	66.61	74.37	129.98	0.25	0.30	0.54	0.81	1.04	Matched[4136]
YLR393W	ATP10	"Mitochondrial inner membrane protein required for assembly of the F0 sector of mitochondrial F1F0 ATP synthase, interacts genetically with ATP6"	Verified	chr12:907079-907918	907079-907918	98.5%	58.01	61.63	60.43	47.13	68.89	79.76	59.82	53.78	74.32	0.22	0.22	0.31	0.47	1.00	Covered/w/another[4137]
YLR394W	CST9	SUMO E3 ligase; required for synaptonemal complex formation; localizes to synapsis initiation sites on meiotic chromosomes; potential Cdc28p substrate	Verified	chr12:907950-909398	907950-909398	99.1%	110.78	105.90	98.24	116.35	128.19	132.37	108.34	107.29	130.28	0.40	0.44	0.54	0.28	0.53	Covered/w/another[4137]
YLR395C	COX8	"Subunit VIII of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain"	Verified	chr12:909729-909965	909729-909965	98.7%	658.35	842.18	795.15	923.41	1320.98	803.71	750.27	859.28	1062.34	2.77	3.49	4.40	0.31	0.01	Matched[4138]
YLR396C	VPS33	ATP-binding protein that is a subunit of the HOPS complex and the CORVET tethering complex; essential for membrane docking and fusion at both the Golgi-to-endosome and endosome-to-vacuole stages of protein transport	Verified	chr12:910235-912310	910235-912310	99.2%	74.78	75.75	55.36	55.36	81.58	55.84	75.26	55.36	68.71	0.28	0.22	0.28	0.31	0.56	Matched[4139]
YLR397C	AFG2	"ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex; may be involved in degradation of aberrant mRNAs"	Verified	chr12:912550-914892	912550-914892	98.9%	128.55	82.39	73.76	57.80	28.47	18.55	105.47	65.78	23.51	0.39	0.27	0.10	-1.48	-1.16	Matched[4140]
YLR398C	SKI2	"Putative RNA helicase, involved in exosome mediated 3' to 5' mRNA degradation and translation inhibition of non-poly(A) mRNAs; forms complex with Ski3p and Ski8p; required for repressing propagation of dsRNA viruses"	Verified	chr12:915156-919019	915156-919019	99.3%	125.64	117.56	110.78	104.26	76.37	100.09	121.60	107.52	88.23	0.45	0.44	0.37	-0.29	0.29	Matched[4141]
YLR399W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the characterized ORF BDF1/YLR399C"	Dubious	chr12:920869-920973	920869-920973	99.4%	373.65	297.01	229.94	364.07	364.07	565.27	335.33	297.01	464.67	1.24	1.21	1.93	0.65	NaN	Covered/w/another[4143]
YLR399C	BDF1	Protein involved in transcription initiation at TATA-containing promoters; associates with the basal transcription factor TFIID; contains two bromodomains; corresponds to the C-terminal region of mammalian TAF1; redundant with Bdf2p	Verified	chr12:919536-921596	919536-921596	99.1%	426.40	434.24	431.79	364.23	731.89	621.25	430.32	398.01	676.57	1.59	1.62	2.80	0.77	0.85	Matched[4143]
YLR400W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr12:922063-922536	922063-922536	99.4%	59.41	50.92	46.68	23.34	6.36	6.36	55.16	35.01	6.36	0.20	0.14	0.03	-2.46	0.59	Overlap[4144]
YLR401C	DUS3	"Dihydrouridine synthase, member of a widespread family of conserved proteins including Smm1p, Dus1p, and Dus4p; contains a consensus oleate response element (ORE) in its promoter region"	Verified	chr12:922442-924448	922442-924448	99.1%	166.46	129.75	118.68	103.60	14.58	4.53	148.10	111.14	9.56	0.55	0.45	0.04	-3.54	-3.39	Matched[4144]
YLR402W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr12:924564-925079	924564-925079	98.9%	31.35	15.68	19.60	15.68	11.76	21.56	23.52	17.64	16.66	0.09	0.07	0.07	-0.08	-0.30	Overlap[4145]
YLR403W	SFP1	"Transcription factor that controls expression of many ribosome biogenesis genes in response to nutrients and stress, regulates G2/M transitions during mitotic cell cycle and DNA-damage response, involved in cell size modulation"	Verified	chr12:925567-927618	925567-927618	98.8%	174.09	165.71	145.98	114.91	130.69	124.28	169.90	130.45	127.49	0.63	0.53	0.53	-0.03	0.89	Matched[4145]
YLR404W		Putative protein of unknown function; may be an integral membrane protein; YLR404W is not an essential gene	Uncharacterized	chr12:928742-929599	928742-929599	99.0%	98.86	94.15	80.03	81.21	82.39	44.72	96.51	80.62	63.55	0.36	0.33	0.26	-0.34	-0.33	Matched[4147]
YLR405W	DUS4	"Dihydrouridine synthase, member of a widespread family of conserved proteins including Smm1p, Dus1p, and Dus3p"	Verified	chr12:929788-930891	929788-930891	98.6%	160.80	124.97	91.89	91.89	38.59	17.46	142.88	91.89	28.03	0.53	0.37	0.12	-1.71	-1.84	Matched[4148]
YLR406C	RPL31B	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl31Ap and has similarity to rat L31 ribosomal protein; associates with the karyopherin Sxm1p"	Verified	chr12:931064-931754	931064-931348,931698-931754	81.7%	4397.49	3595.34	3455.69	2746.64	637.42	386.75	3996.42	3101.16	512.09	14.75	12.59	2.12	-2.60	-3.45	Frag>80[4149,4150]
YLR406C-A		Putative protein of unknown function	Uncharacterized	chr12:932205-932354	932205-932354	98.1%	0.00	6.80	6.80	6.80	0.00	0.00	3.40	6.80	0.00	0.01	0.03	0.00	-Inf	NaN	
YLR407W		Putative protein of unknown function; YLR407W is not an essential gene	Uncharacterized	chr12:932966-933655	932966-933655	98.2%	159.31	163.74	109.16	94.41	54.58	36.88	161.52	101.78	45.73	0.60	0.41	0.19	-1.15	-0.31	Matched[4151]
YLR408C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endosome; YLR408C is not an essential gene	Uncharacterized	chr12:933883-934251	933883-934251	99.3%	84.60	114.62	120.08	120.08	324.77	131.00	99.61	120.08	227.88	0.37	0.49	0.94	0.92	0.48	Matched[4152]
YLR409C	UTP21	"Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data"	Verified	chr12:934412-937231	934412-937231	99.1%	167.44	117.35	108.41	72.27	12.52	3.22	142.40	90.34	7.87	0.53	0.37	0.03	-3.52	-4.17	Matched[4153]
YLR410W	VIP1	"Inositol hexakisphosphate (IP6) and inositol heptakisphosphate (IP7) kinase; generation of IP7 by Vip1p is important for phosphate signaling; likely involved in cortical actin cytoskeleton function, by analogy with S. pombe ortholog asp1"	Verified	chr12:937539-940979	937539-940979	98.7%	243.47	241.70	222.57	205.20	134.54	156.03	242.58	213.88	145.29	0.90	0.87	0.60	-0.56	0.04	Matched[4154]
YLR411W	CTR3	"High-affinity copper transporter of the plasma membrane, acts as a trimer; gene is disrupted by a Ty2 transposon insertion in many laboratory strains of S. cerevisiae"	Verified	chr12:947251-947976	947251-947976	98.7%	30.70	32.09	39.07	26.51	32.09	30.70	31.40	32.79	31.40	0.12	0.13	0.13	-0.06	0.04	Matched[4155]
YLR412W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and is induced in response to the DNA-damaging agent MMS; YLR412W is not an essential gene	Uncharacterized	chr12:948366-949190	948366-949190	98.9%	264.64	267.09	254.84	219.31	147.02	134.77	265.86	237.07	140.90	0.98	0.96	0.58	-0.75	-0.21	Matched[4156]
YLR412C-A		Putative protein of unknown function	Uncharacterized	chr12:950264-950470	950264-950470	99.2%	29.22	19.48	9.74	4.87	14.61	48.70	24.35	7.31	31.66	0.09	0.03	0.13	2.12	NaN	Covered[4157]
YLR413W		Putative protein of unknown function; YLR413W is not an essential gene	Uncharacterized	chr12:951153-953180	951153-953180	99.2%	577.69	1715.17	654.25	552.34	56.68	21.87	1146.43	603.29	39.27	4.23	2.45	0.16	-3.94	-2.20	Matched[4158]
YLR414C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the bud and cytoplasm; Hog1p is required for transcriptional induction in response to cell wall damage; YLR414C is not an essential gene	Uncharacterized	chr12:953350-954141	953350-954141	98.7%	230.19	260.88	249.37	232.75	645.81	387.49	245.54	241.06	516.65	0.91	0.98	2.14	1.10	0.50	Matched[4159]
YLR415C		Putative protein of unknown function; YLR415C is not an essential gene	Uncharacterized	chr12:954256-954594	954256-954594	97.8%	6.03	9.05	18.09	3.02	21.11	6.03	7.54	10.55	13.57	0.03	0.04	0.06	0.36	0.25	Matched[4160]
YLR416C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr12:954488-954886	954488-954886	98.0%	7.67	5.12	2.56	5.12	10.23	2.56	6.39	3.84	6.39	0.02	0.02	0.03	0.74	0.49	Matched[4160]
YLR417W	VPS36	Component of the ESCRT-II complex; contains the GLUE (GRAM Like Ubiquitin binding in EAP45) domain which is involved in interactions with ESCRT-I and ubiquitin-dependent sorting of proteins into the endosome	Verified	chr12:955007-956707	955007-956707	98.7%	72.06	85.16	82.18	66.10	105.41	60.74	78.61	74.14	83.08	0.29	0.30	0.34	0.16	0.20	Matched[4161]
YLR418C	CDC73	"Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p, distinct from Srb-containing Pol II complexes; required for expression of certain genes, modification of some histones, and telomere maintenance"	Verified	chr12:956911-958092	956911-958092	99.2%	175.75	144.18	180.01	155.27	166.36	106.64	159.97	167.64	136.50	0.59	0.68	0.57	-0.30	0.11	Matched[4162]
YLR419W		"Putative helicase with limited sequence similarity to human Rb protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YLR419W is not an essential gene"	Uncharacterized	chr12:958425-962732	958425-962732	98.8%	63.90	44.17	44.40	45.81	10.57	11.04	54.04	45.11	10.81	0.20	0.18	0.04	-2.06	-1.00	Matched[4163]
YLR420W	URA4	"Dihydroorotase, catalyzes the third enzymatic step in the de novo biosynthesis of pyrimidines, converting carbamoyl-L-aspartate into dihydroorotate"	Verified	chr12:963782-964876	963782-964876	98.7%	883.24	540.12	746.36	776.88	328.32	320.92	711.68	761.62	324.62	2.63	3.09	1.35	-1.23	-0.64	Matched[4165]
YLR421C	RPN13	Subunit of the 19S regulatory particle of the 26S proteasome lid	Verified	chr12:965087-965557	965087-965557	99.4%	709.46	591.93	628.26	540.65	1096.25	638.95	650.70	584.45	867.60	2.40	2.37	3.59	0.57	-0.13	Matched[4166]
YLR422W		"Protein of unknown function with similarity to human DOCK proteins (guanine nucleotide exchange factors); interacts with Ino4p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm, YLR422W is not an essential protein"	Uncharacterized	chr12:965894-971692	965894-971692	98.9%	55.61	61.37	55.96	42.71	60.67	73.75	58.49	49.34	67.21	0.22	0.20	0.28	0.45	0.92	Frag>80[4167,4168]
YLR423C	ATG17	Scaffold potein responsible for pre-autophagosomal structure organization; interacts with and is required for activation of Apg1p protein kinase; involved in autophagy but not in the Cvt (cytoplasm to vacuole targeting) pathway	Verified	chr12:971914-973167	971914-973167	99.6%	61.68	87.31	66.48	76.10	140.18	83.31	74.49	71.29	111.74	0.27	0.29	0.46	0.65	0.47	Matched[4169]
YLR424W	SPP382	"Essential protein that forms a dimer with Ntr2p; also forms a trimer, with Ntr2p and Prp43p, that is involved in spliceosome disassembly; found also in a multisubunit complex with the splicing factor Clf1p; suppressor of prp38-1 mutation"	Verified	chr12:973392-975518	973392-975518	98.7%	43.84	43.36	38.60	34.79	53.85	38.12	43.60	36.69	45.98	0.16	0.15	0.19	0.33	0.45	Matched[4170]
YLR425W	TUS1	Guanine nucleotide exchange factor (GEF) that functions to modulate Rho1p activity as part of the cell integrity signaling pathway; multicopy suppressor of tor2 mutation and ypk1 ypk2 double mutation; potential Cdc28p substrate	Verified	chr12:982891-986814	982891-986814	98.8%	52.86	64.72	46.41	44.35	64.20	63.69	58.79	45.38	63.94	0.22	0.18	0.26	0.49	0.88	Matched[4172]
YLR426W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; proposed to be involved in resistance to mechlorethamine and streptozotocin"	Uncharacterized	chr12:987059-988110	987059-987138,987210-988110	98.7%	140.53	139.49	111.59	76.46	136.39	76.46	140.01	94.03	106.43	0.52	0.38	0.44	0.18	0.41	Matched[4173]
YLR427W	MAG2	Cytoplasmic protein of unknown function predicted to encode a DNA-3-methyladenine glycosidase II that catalyzes the hydrolysis of alkylated DNA	Verified	chr12:988425-990437	988425-990437	98.6%	181.81	180.30	165.19	143.53	117.34	118.35	181.05	154.36	117.85	0.67	0.63	0.49	-0.39	0.08	Matched[4174]
YLR429W	CRN1	"Coronin, cortical actin cytoskeletal component that associates with the Arp2p/Arp3p complex to regulate its activity"	Verified	chr12:990774-992729	990774-992729	98.5%	519.42	493.99	509.04	538.10	377.76	363.75	506.70	523.57	370.75	1.87	2.13	1.54	-0.50	-0.13	Matched[4175]
YLR428C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF CRN1"	Dubious	chr12:990614-990958	990614-990958	98.3%	165.17	188.77	200.57	182.87	132.73	106.18	176.97	191.72	119.45	0.65	0.78	0.49	-0.68	-0.00	Overlap[4174,4175]
YLR430W	SEN1	Presumed helicase required for RNA polymerase II transcription termination and processing of RNAs; homolog of Senataxin which causes Ataxia-Oculomotor Apraxia 2 and a dominant form of amyotrophic lateral sclerosis	Verified	chr12:993431-1000126	993431-1000126	98.8%	138.07	106.61	102.38	77.73	33.57	37.96	122.34	90.05	35.76	0.45	0.37	0.15	-1.33	-0.69	Frag<80[4176]
YLR431C	ATG23	"Peripheral membrane protein, required for autophagy and for the cytoplasm-to-vacuole targeting (Cvt) pathway"	Verified	chr12:1000339-1001700	1000339-1001700	99.3%	61.39	74.70	74.70	64.35	83.58	63.61	68.05	69.52	73.59	0.25	0.28	0.30	0.08	0.34	Covered[4177]
YLR432W	IMD3	"Inosine monophosphate dehydrogenase, catalyzes the first step of GMP biosynthesis, member of a four-gene family in S. cerevisiae, constitutively expressed"	Verified	chr12:1002554-1004125	1002554-1004125	55.5%	1737.70	1232.21	1486.67	1182.92	240.71	179.96	1484.96	1334.80	210.34	5.48	5.42	0.87	-2.67	-2.24	Frag>80[4178,4179]
YLR433C	CNA1	"Calcineurin A; one isoform (the other is CMP2) of the catalytic subunit of calcineurin, a Ca++/calmodulin-regulated protein phosphatase which regulates Crz1p (a stress-response transcription factor), the other calcineurin subunit is CNB1"	Verified	chr12:1004344-1006005	1004344-1006005	99.1%	168.81	156.67	158.49	137.84	69.83	74.69	162.74	148.17	72.26	0.60	0.60	0.30	-1.04	-0.66	Matched[4180]
YLR435W	TSR2	Protein with a potential role in pre-rRNA processing	Verified	chr12:1006375-1006992	1006375-1006992	98.3%	266.59	133.30	169.50	164.56	19.75	4.94	199.95	167.03	12.34	0.74	0.68	0.05	-3.76	-3.57	Matched[4181]
YLR434C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF TSR2/YLR435W"	Dubious	chr12:1006022-1006405	1006022-1006405	99.0%	63.14	26.31	60.51	49.98	13.15	18.41	44.72	55.24	15.78	0.17	0.22	0.07	-1.81	-3.03	Overlap[4180,4181]
YLR436C	ECM30	Non-essential protein of unknown function	Verified	chr12:1007418-1011242	1007418-1011242	98.8%	159.75	181.18	145.21	143.36	166.90	206.04	170.47	144.28	186.47	0.63	0.59	0.77	0.37	1.03	Matched[4182]
YLR437C		Putative protein of unknown function; epitope tagged protein localizes to the cytoplasm	Uncharacterized	chr12:1011619-1012020	1011619-1012020	95.5%	229.19	270.86	276.07	200.54	463.59	273.47	250.03	238.31	368.53	0.92	0.97	1.53	0.63	0.63	Frag>80[4183,4184]
YLR438W	CAR2	"L-ornithine transaminase (OTAse), catalyzes the second step of arginine degradation, expression is dually-regulated by allophanate induction and a specific arginine induction process; not nitrogen catabolite repression sensitive"	Verified	chr12:1012498-1013772	1012498-1013772	98.6%	367.51	544.10	509.10	437.51	1672.07	1558.32	455.80	473.30	1615.19	1.68	1.92	6.69	1.77	1.86	Matched[4185]
YLR437C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF CAR2/YLR438W"	Dubious	chr12:1012456-1012683	1012456-1012683	98.7%	217.78	355.56	302.22	297.78	1062.22	1195.56	286.67	300.00	1128.89	1.06	1.22	4.68	1.91	NaN	Covered/w/another[4185]
YLR438C-A	LSM3	"Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA"	Verified	chr12:1013906-1014175	1013906-1014175	98.9%	625.27	527.93	640.25	531.67	572.85	340.72	576.60	585.96	456.79	2.13	2.38	1.89	-0.36	-0.27	Matched[4186]
YLR439W	MRPL4	Mitochondrial ribosomal protein of the large subunit	Verified	chr12:1014488-1015447	1014488-1015447	98.7%	188.90	179.40	186.79	176.24	224.78	181.51	184.15	181.51	203.15	0.68	0.74	0.84	0.16	0.47	Matched[4187]
YLR440C	SEC39	Protein of unknown function proposed to be involved in protein secretion	Verified	chr12:1015565-1017694	1015565-1017694	99.3%	112.01	106.34	98.78	73.73	67.58	59.55	109.17	86.25	63.57	0.40	0.35	0.26	-0.44	-0.02	Matched[4188]
YLR441C	RPS1A	Ribosomal protein 10 (rp10) of the small (40S) subunit; nearly identical to Rps1Bp and has similarity to rat S3a ribosomal protein	Verified	chr12:1018138-1018905	1018138-1018905	74.5%	10407.98	7602.94	8773.16	7919.07	2048.76	1316.93	9005.46	8346.12	1682.85	33.24	33.88	6.97	-2.31	-2.19	Matched[4189]
YLR442C	SIR3	"Silencing protein that interacts with Sir2p and Sir4p, and histone H3 and H4 tails, to establish a transcriptionally silent chromatin state; required for spreading of silenced chromatin; recruited to chromatin through interaction with Rap1p"	Verified	chr12:1019312-1022248	1019312-1022248	99.4%	76.08	77.11	70.25	68.20	53.80	59.63	76.59	69.23	56.72	0.28	0.28	0.23	-0.29	0.34	Matched[4190]
YLR443W	ECM7	Non-essential protein of unknown function	Verified	chr12:1022622-1023968	1022622-1023968	98.7%	124.10	110.56	97.02	81.98	105.30	69.19	117.33	89.50	87.25	0.43	0.36	0.36	-0.04	-0.26	Matched[4191]
YLR444C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr12:1023683-1023985	1023683-1023985	98.6%	140.59	150.63	117.15	137.24	107.11	56.90	145.61	127.20	82.01	0.54	0.52	0.34	-0.63	0.04	Covered/w/another[4191]
YLR445W		Hypothetical protein	Uncharacterized	chr12:1024186-1024834	1024186-1024569,1024652-1024834	98.5%	5.37	8.95	1.79	3.58	8.95	14.32	7.16	2.69	11.64	0.03	0.01	0.05	2.12	-0.40	Frag<80[4192]
YLR446W		Putative protein of unknown function with similarity to hexokinases; transcript is upregulated during sporulation and the unfolded protein response; YLR446W is not an essential gene	Uncharacterized	chr12:1025211-1026512	1025211-1026512	99.1%	69.01	67.46	48.85	39.54	107.00	96.15	68.23	44.20	101.57	0.25	0.18	0.42	1.20	1.04	Matched[4193]
YLR447C	VMA6	"Subunit d of the five-subunit V0 integral membrane domain of vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found in the endomembrane system; stabilizes VO subunits; required for V1 domain assembly on the vacuolar membrane"	Verified	chr12:1026853-1027890	1026853-1027890	99.3%	1914.99	2190.64	1746.11	1734.46	1127.84	780.36	2052.82	1740.28	954.10	7.58	7.06	3.95	-0.87	-0.96	Frag>80[4194,4195]
YLR448W	RPL6B	"Protein component of the large (60S) ribosomal subunit, has similarity to Rpl6Ap and to rat L6 ribosomal protein; binds to 5.8S rRNA"	Verified	chr12:1028850-1029764	1028850-1028864,1029249-1029764	82.6%	4126.85	3301.94	3429.55	2600.08	742.88	366.88	3714.39	3014.81	554.88	13.71	12.24	2.30	-2.44	-2.40	Frag>80[4196,4197]
YLR449W	FPR4	"Peptidyl-prolyl cis-trans isomerase (PPIase) (proline isomerase) localized to the nucleus; catalyzes isomerization of proline residues in histones H3 and H4, which affects lysine methylation of those histones"	Verified	chr12:1030830-1032008	1030830-1032008	97.6%	713.27	391.82	607.28	523.00	90.35	59.95	552.54	565.14	75.15	2.04	2.29	0.31	-2.91	-1.24	Matched[4198]
YLR450W	HMG2	"One of two isozymes of HMG-CoA reductase that convert HMG-CoA to mevalonate, a rate-limiting step in sterol biosynthesis; overproduction induces assembly of peripheral ER membrane arrays and short nuclear-associated membrane stacks"	Verified	chr12:1032624-1035761	1032624-1035761	98.7%	151.49	281.02	149.55	162.80	92.06	123.39	216.25	156.17	107.72	0.80	0.63	0.45	-0.54	0.15	Matched[4199]
YLR451W	LEU3	"Zinc-finger transcription factor that regulates genes involved in branched chain amino acid biosynthesis and ammonia assimilation; positively regulated by alpha-isopropylmalate, an intermediate in leucine biosynthesis"	Verified	chr12:1036090-1038750	1036090-1038750	98.7%	94.78	88.69	64.33	48.34	39.21	31.59	91.73	56.33	35.40	0.34	0.23	0.15	-0.67	-0.50	Matched[4200]
YLR452C	SST2	"GTPase-activating protein for Gpa1p, regulates desensitization to alpha factor pheromone; also required to prevent receptor-independent signaling of the mating pathway; member of the RGS (regulator of G-protein signaling) family"	Verified	chr12:1039268-1041364	1039268-1041364	99.1%	399.06	439.02	369.70	309.04	139.12	91.46	419.04	339.37	115.29	1.55	1.38	0.48	-1.56	-1.02	Matched[4201]
YLR453C	RIF2	Protein that binds to the Rap1p C-terminus and acts synergistically with Rif1p to help control telomere length and establish telomeric silencing; deletion results in telomere elongation	Verified	chr12:1041797-1042984	1041797-1042984	99.2%	37.33	39.88	29.70	30.55	30.55	26.30	38.61	30.12	28.42	0.14	0.12	0.12	-0.08	0.51	Matched[4202]
YLR454W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr12:1043996-1051882	1043996-1051882	99.0%	94.17	110.18	89.68	89.43	110.31	155.92	102.17	89.55	133.11	0.38	0.36	0.55	0.57	0.71	Frag>80[4203,4204]
YLR455W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; deletion confers sensitivity to 4-(N-(S-glutathionylacetyl)amino) phenylarsenoxide (GSAO)	Uncharacterized	chr12:1053627-1054541	1053627-1054541	98.6%	283.62	248.17	254.81	218.25	570.56	415.45	265.89	236.53	493.01	0.98	0.96	2.04	1.06	1.14	Covered[4205]
YLR456W		Putative protein of unknown function	Uncharacterized	chr12:1055068-1055682	1055068-1055682	99.2%	85.25	80.33	80.33	77.05	80.33	49.18	82.79	78.69	64.76	0.31	0.32	0.27	-0.28	-0.64	Covered/w/another[4206]
YLR458W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps 5' end of essential NBP1 gene required for mitosis"	Dubious	chr12:1056453-1056833	1056453-1056833	99.6%	21.09	65.91	34.27	31.64	52.73	47.46	43.50	32.96	50.09	0.16	0.13	0.21	0.60	0.01	Covered/w/another[4206]
YLR457C	NBP1	"Spindle pole body (SPB) component, required for the insertion of the duplication plaque into the nuclear membrane during SPB duplication; essential for bipolar spindle formation; component of the Mps2p-Bbp1p complex"	Verified	chr12:1055810-1056769	1055810-1056769	99.3%	61.89	82.87	61.89	44.06	75.52	58.74	72.38	52.97	67.13	0.27	0.22	0.28	0.34	0.54	Matched[4206]
YLR459W	GAB1	"GPI transamidase subunit, involved in attachment of glycosylphosphatidylinositol (GPI) anchors to proteins; may have a role in recognition of the attachment signal or of the lipid portion of GPI"	Verified	chr12:1057332-1058516	1057332-1058516	99.3%	266.08	272.03	221.88	201.47	192.12	150.47	269.06	211.67	171.29	0.99	0.86	0.71	-0.31	-0.20	Matched[4207]
YLR460C		"Putative protein of unknown function, possibly up-regulated by iodine"	Uncharacterized	chr12:1059755-1060885	1059755-1060885	44.3%	41.92	37.92	47.90	31.94	35.93	35.93	39.92	39.92	35.93	0.15	0.16	0.15	-0.15	-0.23	Frag<80[4209]
YLR461W	PAU4	"Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme"	Verified	chr12:1062917-1063279	1062917-1063279	8.4%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.57	
YLR462W		Putative protein of unknown function with similarity to helicases; YLR462W is within the telomere on the right arm of chromosome XII	Uncharacterized	chr12:1065954-1066562	1065954-1066562	0.9%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	-0.23	
YLR464W		Putative protein of unknown function with similarity to helicases; YLR464W contains an intron and overlaps the verified gene YRF1-4/YLR466W and two dubious ORFs YLR463C and YLR465C	Uncharacterized	chr12:1066570-1067499	1066570-1067082,1067362-1067499	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.40	
YLR463C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the uncharacterized ORFs YLR462W and YLR464W"	Dubious	chr12:1066263-1066814	1066263-1066814	0.5%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	-0.33	
YLR466W	YRF1-4	"Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p"	Verified	chr12:1067085-1071233	1067085-1071233	0.1%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.30	
YLR465C	BSC3	"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; 100% of YLR465C overlaps the uncharacterized ORF YLR464W and 86% of YLR465C overlaps the verified gene YRF1-4"	Dubious	chr12:1067043-1067351	1067043-1067351	1.4%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	-0.33	
YLR466C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF YRF1-4/YLR466W"	Dubious	chr12:1070385-1070867	1070385-1070867	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YLR466C-B		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Uncharacterized	chr12:1071592-1071708	1071592-1071708	15.0%	171.43	114.29	228.57	57.14	171.43	285.71	142.86	142.86	228.57	0.53	0.58	0.95	0.68	NaN	Matched[4210]
YLR467W	YRF1-5	"Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p"	Verified	chr12:1072506-1077896	1072506-1077896	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.30	
YLR467C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF YRF1-4/YLR466W"	Dubious	chr12:1077048-1077530	1077048-1077530	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YML133W-B		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the uncharacterized ORF YML133C"	Dubious	chr13:827-1309	827-1309	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YML133W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the uncharacterized ORF YML133C"	Dubious	chr13:1610-2185	1610-2185	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YML133C		"Putative protein of unknown function with similarity to helicases; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YML133C contains an intron"	Uncharacterized	chr13:461-4684	461-3791,3891-4684	0.1%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.30	
YML132W	COS3	"Protein involved in salt resistance; interacts with sodium:hydrogen antiporter Nha1p; member of the DUP380 subfamily of conserved, often subtelomerically-encoded proteins"	Verified	chr13:7244-8383	7244-8383	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.13	
YML131W		Putative protein of unknown function with similarity to oxidoreductases; HOG1 and SKO1-dependent mRNA expression is induced after osmotic shock; GFP-fusion protein localizes to the cytoplasm and is induced by the DNA-damaging agent MMS	Uncharacterized	chr13:10199-11296	10199-11296	98.8%	183.51	91.29	239.76	193.65	489.66	367.02	137.40	216.71	428.34	0.51	0.88	1.77	0.98	1.19	Matched[4213]
YML130C	ERO1	Thiol oxidase required for oxidative protein folding in the endoplasmic reticulum	Verified	chr13:11484-13175	11484-13175	99.2%	266.86	211.46	279.37	235.29	1611.87	1210.99	239.16	257.33	1411.43	0.88	1.04	5.85	2.46	2.54	Matched[4214]
YML129C	COX14	"Mitochondrial membrane protein, required for assembly of cytochrome c oxidase"	Verified	chr13:14542-14754	14542-14754	99.4%	538.37	538.37	760.33	580.87	1119.24	713.11	538.37	670.60	916.17	1.99	2.72	3.80	0.45	0.61	Matched[4216]
YML128C	MSC1	"Protein of unknown function; mutant is defective in directing meiotic recombination events to homologous chromatids; the authentic, non-tagged protein is detected in highly purified mitochondria and is phosphorylated"	Verified	chr13:15136-16677	15136-16677	99.1%	176.03	600.74	301.02	397.87	4858.90	4514.68	388.38	349.45	4686.79	1.43	1.42	19.42	3.75	3.28	Frag>80[4216,4217,4218]
YML127W	RSC9	Component of the RSC chromatin remodeling complex; DNA-binding protein involved in the synthesis of rRNA and in transcriptional repression and activation of genes regulated by the Target of Rapamycin (TOR) pathway	Verified	chr13:17065-18810	17065-18810	98.8%	189.62	187.30	209.92	161.79	374.02	332.85	188.46	185.85	353.44	0.70	0.75	1.46	0.93	0.88	Matched[4219]
YML126C	ERG13	"3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase, catalyzes the formation of HMG-CoA from acetyl-CoA and acetoacetyl-CoA; involved in the second step in mevalonate biosynthesis"	Verified	chr13:19061-20536	19061-20536	99.0%	802.60	770.44	734.86	693.81	343.48	338.01	786.52	714.33	340.75	2.90	2.90	1.41	-1.07	-0.41	Matched[4220]
YML125C	PGA3	"Essential protein required for maturation of Gas1p and Pho8p, protein trafficking; GFP-fusion protein localizes to the endoplasmic reticulum; null mutants have a cell separation defect"	Uncharacterized	chr13:20762-21700	20762-21700	98.8%	522.72	329.80	409.56	331.96	170.29	112.09	426.26	370.76	141.19	1.57	1.50	0.58	-1.39	-1.14	Matched[4221]
YML124C	TUB3	"Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; expressed at lower level than Tub1p"	Verified	chr13:22049-23684	22049-23361,23660-23684	95.7%	556.30	514.89	541.46	548.49	501.61	463.33	535.60	544.98	482.47	1.98	2.21	2.00	-0.18	0.41	Frag>80[4222,4223,4224]
YML123C	PHO84	High-affinity inorganic phosphate (Pi) transporter and low-affinity manganese transporter; regulated by Pho4p and Spt7p; mutation confers resistance to arsenate; exit from the ER during maturation requires Pho86p	Verified	chr13:24038-25801	24038-25801	98.7%	5122.96	5723.64	4859.38	3709.71	828.08	368.67	5423.30	4284.55	598.38	20.02	17.39	2.48	-2.84	-3.69	Matched[4225]
YML122C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr13:26039-26419	26039-26419	98.5%	18.65	18.65	10.66	10.66	13.32	26.64	18.65	10.66	19.98	0.07	0.04	0.08	0.91	0.21	Matched[4226]
YML121W	GTR1	"Cytoplasmic GTP binding protein and negative regulator, with homolog Gtr2p, of the Ran/Tc4 GTPase cycle; component of GSE complex, which is required for sorting of Gap1p; involved in phosphate transport; has homology to human RagA and RagB"	Verified	chr13:26930-27862	26930-27862	98.8%	271.27	356.99	208.34	215.93	204.00	145.40	314.13	212.13	174.70	1.16	0.86	0.72	-0.28	-0.12	Matched[4227]
YML120C	NDI1	"NADH:ubiquinone oxidoreductase, transfers electrons from NADH to ubiquinone in the respiratory chain but does not pump protons, in contrast to the higher eukaryotic multisubunit respiratory complex I; phosphorylated; homolog of human AMID"	Verified	chr13:28266-29807	28266-29807	98.8%	184.38	238.84	316.26	432.40	519.67	547.89	211.61	374.33	533.78	0.78	1.52	2.21	0.51	0.76	Matched[4228]
YML119W		Putative protein of unknown funtion; YML119W is not an essential gene; potential Cdc28p substrate	Uncharacterized	chr13:30611-31684	30611-31684	98.7%	150.97	181.17	115.12	116.06	160.41	111.34	166.07	115.59	135.88	0.61	0.47	0.56	0.23	0.35	Matched[4230]
YML118W	NGL3	"Putative endonuclease, has a domain similar to a magnesium-dependent endonuclease motif in mRNA deadenylase Ccr4p; similar to Ngl1p and Ngl2p"	Verified	chr13:32334-33851	32334-33851	98.6%	15.37	35.42	16.71	12.70	38.76	86.20	25.39	14.70	62.48	0.09	0.06	0.26	2.09	2.67	Matched[4231]
YML117W	NAB6	"Putative RNA-binding protein, based on computational analysis of large-scale protein-protein interaction data"	Verified	chr13:34243-37647	34243-37647	98.7%	207.30	257.86	210.28	217.12	303.96	355.71	232.58	213.70	329.84	0.86	0.87	1.37	0.63	1.23	Matched[4232]
YML116W-A		Putative protein of unknown function	Dubious	chr13:37472-37774	37472-37774	98.6%	421.58	585.53	394.81	361.36	953.58	669.18	503.55	378.08	811.38	1.86	1.53	3.36	1.10	1.22	Covered/w/another[4232]
YML116W	ATR1	"Multidrug efflux pump of the major facilitator superfamily, required for resistance to aminotriazole and 4-nitroquinoline-N-oxide"	Verified	chr13:38196-39824	38196-39824	98.7%	110.06	96.38	95.14	54.72	44.15	14.30	103.22	74.93	29.23	0.38	0.30	0.12	-1.36	-1.33	Matched[4233]
YML115C	VAN1	"Component of the mannan polymerase I, which contains Van1p and Mnn9p and is involved in the first steps of mannan synthesis; mutants are vanadate-resistant"	Verified	chr13:40187-41794	40187-41794	99.1%	283.55	277.28	289.82	268.49	176.90	183.18	280.41	279.16	180.04	1.04	1.13	0.75	-0.63	0.01	Matched[4234]
YML114C	TAF8	"TFIID subunit (65 kDa), involved in RNA polymerase II transcription initiation"	Verified	chr13:42043-43575	42043-43575	98.9%	118.02	145.71	98.24	78.46	80.44	80.44	131.87	88.35	80.44	0.49	0.36	0.33	-0.14	0.55	Matched[4235]
YML113W	DAT1	DNA binding protein that recognizes oligo(dA).oligo(dT) tracts; Arg side chain in its N-terminal pentad Gly-Arg-Lys-Pro-Gly repeat is required for DNA-binding; not essential for viability	Verified	chr13:44045-44791	44045-44791	96.7%	124.53	121.76	103.78	76.10	22.14	37.36	123.15	89.94	29.75	0.45	0.37	0.12	-1.60	-1.30	Covered/w/another[4236]
YML112W	CTK3	"Gamma subunit of C-terminal domain kinase I (CTDK-I), which phosphorylates the C-terminal repeated domain of the RNA polymerase II large subunit (Rpo21p) to affect both transcription and pre-mRNA 3' end processing"	Verified	chr13:45063-45953	45063-45953	98.7%	92.06	69.33	86.38	77.29	71.60	63.65	80.70	81.83	67.63	0.30	0.33	0.28	-0.28	0.39	Covered/w/another[4236]
YML111W	BUL2	"Component of the Rsp5p E3-ubiquitin ligase complex, involved in intracellular amino acid permease sorting, functions in heat shock element mediated gene expression, essential for growth in stress conditions, functional homolog of BUL1"	Verified	chr13:46942-49704	46942-49704	99.0%	149.58	153.97	136.05	122.52	88.87	89.24	151.78	129.28	89.05	0.56	0.52	0.37	-0.54	-0.33	Matched[4237]
YML110C	COQ5	"2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase, involved in ubiquinone (Coenzyme Q) biosynthesis; localizes to the matrix face of the mitochondrial inner membrane in a large complex with other ubiquinone biosynthetic enzymes"	Verified	chr13:50031-50954	50031-50954	99.2%	1097.60	1565.67	1136.88	1149.97	1655.13	1604.95	1331.64	1143.43	1630.04	4.92	4.64	6.75	0.51	0.62	Frag>80[4238,4239,4240]
YML109W	ZDS2	"Protein that interacts with silencing proteins at the telomere, involved in transcriptional silencing; paralog of Zds1p"	Verified	chr13:51640-54468	51640-54468	98.6%	68.09	50.89	50.89	46.23	26.16	21.50	59.49	48.56	23.83	0.22	0.20	0.10	-1.03	-0.17	
YML108W		Putative protein of unknown function whose structure defines a new subfamily of the split beta-alpha-beta sandwiches; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YML108W is not an essential gene	Uncharacterized	chr13:54793-55110	54793-55110	98.7%	127.49	130.68	114.74	114.74	57.37	19.12	129.08	114.74	38.25	0.48	0.47	0.16	-1.58	-1.48	Covered/w/another[4241]
YML107C	PML39	Protein required for nuclear retention of unspliced pre-mRNAs along with Mlp1p and Pml1p; anchored to nuclear pore complex via Mlp1p and Mlp2p; found with the subset of nuclear pores farthest from the nucleolus; may interact with ribosomes	Verified	chr13:55265-56269	55265-56269	99.1%	102.38	74.27	73.27	75.28	72.26	48.18	88.32	74.27	60.22	0.33	0.30	0.25	-0.30	-0.04	Covered/w/another[4241]
YML106W	URA5	"One of two orotate phosphoribosyltransferase isozymes (see also URA10) that catalyze the fifth enzymatic step in de novo biosynthesis of pyrimidines, converting orotate into orotidine-5'-phosphate"	Verified	chr13:56773-57453	56773-57453	98.8%	1814.26	1326.89	1583.95	1457.65	508.17	393.76	1570.58	1520.80	450.97	5.80	6.17	1.87	-1.75	-1.90	Matched[4242]
YML105C	SEC65	"Subunit of the signal recognition particle (SRP), involved in protein targeting to the ER; interacts with Srp54p; homolog of mammalian SRP19"	Verified	chr13:57866-58687	57866-58687	99.2%	392.52	356.95	316.47	359.40	236.74	210.98	374.73	337.93	223.86	1.38	1.37	0.93	-0.59	-0.51	Matched[4243]
YML104C	MDM1	"Intermediate filament protein, required for nuclear and mitochondrial transmission to daughter buds; contains a Phox homology (PX) domain and specifically binds phosphatidylinositol 3-phosphate (PtdIns-3-P)"	Verified	chr13:58939-62322	58939-62322	99.2%	110.48	125.37	95.00	69.39	60.75	48.24	117.93	82.19	54.50	0.44	0.33	0.23	-0.59	-0.10	Matched[4244]
YML103C	NUP188	"Subunit of the nuclear pore complex (NPC), involved in the structural organization of the complex and of the nuclear envelope, also involved in nuclear envelope permeability, interacts with Pom152p and Nic96p"	Verified	chr13:62582-67549	62582-67549	99.1%	162.10	132.24	121.88	124.72	83.89	82.67	147.17	123.30	83.28	0.54	0.50	0.35	-0.57	-0.34	Matched[4245]
YML102W	CAC2	"Component of the chromatin assembly complex (with Rlf2p and Msi1p) that assembles newly synthesized histones onto recently replicated DNA, required for building functional kinetochores, conserved from yeast to humans"	Verified	chr13:68294-69700	68294-69700	98.1%	97.06	106.48	100.69	85.47	105.03	73.88	101.77	93.08	89.46	0.38	0.38	0.37	-0.06	0.09	Matched[4246]
YML101C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr13:69409-69726	69409-69726	98.2%	150.54	128.12	140.93	121.71	153.74	60.86	139.33	131.32	107.30	0.51	0.53	0.44	-0.29	0.82	Covered/w/another[4246]
YML101C	CUE4	"Protein of unknown function; has a CUE domain that binds ubiquitin, which may facilitate intramolecular monoubiquitination"	Verified	chr13:69735-70088	69735-70088	98.6%	177.59	137.49	220.55	171.86	501.25	295.02	157.54	196.20	398.14	0.58	0.80	1.65	1.02	0.86	Matched[4247]
YML100W-A		"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr13:70138-70311	70138-70311	98.4%	5.84	5.84	11.68	0.00	110.98	40.89	5.84	5.84	75.93	0.02	0.02	0.31	3.70	NaN	Matched[4248]
YML100W	TSL1	"Large subunit of trehalose 6-phosphate synthase (Tps1p)/phosphatase (Tps2p) complex, which converts uridine-5'-diphosphoglucose and glucose 6-phosphate to trehalose, homologous to Tps3p and may share function"	Verified	chr13:70624-73920	70624-73920	98.8%	155.32	427.89	493.57	609.91	3810.15	4641.06	291.60	551.74	4225.61	1.08	2.24	17.51	2.94	2.89	Frag>80[4248,4249,4250,4251,4252]
YML099W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF ARG81/YML099C"	Dubious	chr13:74229-74558	74229-74558	99.7%	91.22	121.63	115.55	69.94	82.10	60.81	106.42	92.74	71.46	0.39	0.38	0.30	-0.38	0.15	Covered/w/another[4253]
YML099C	ARG81	"Zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type, involved in the regulation of arginine-responsive genes; acts with Arg80p and Arg82p"	Verified	chr13:74398-77040	74398-77040	99.1%	73.68	78.27	64.14	53.07	51.16	64.52	75.97	58.60	57.84	0.28	0.24	0.24	-0.02	0.31	Matched[4253]
YML098W	TAF13	"TFIID subunit (19 kDa), involved in RNA polymerase II transcription initiation, similar to histone H4 with atypical histone fold motif of Spt3-like transcription factors"	Verified	chr13:77267-77770	77267-77770	98.2%	230.42	272.87	226.38	220.31	192.02	117.23	251.64	223.35	154.62	0.93	0.91	0.64	-0.53	-0.49	Matched[4254]
YML097C	VPS9	A guanine nucleotide exchange factor involved in vesicle-mediated vacuolar protein transport; specifically stimulates the intrinsic guanine nucleotide exchange activity of Vps21p/Rab5: similar to mammalian ras inhibitors; binds ubiquitin	Verified	chr13:78335-79690	78335-79690	99.2%	121.87	138.22	133.02	91.40	87.69	62.42	130.05	112.21	75.06	0.48	0.46	0.31	-0.58	-0.31	Matched[4256]
YML096W		Putative protein of unknown function with similarity to asparagine synthetases; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YML096W is not an essential gene and partially overlaps the verified gene RAD10	Uncharacterized	chr13:79909-81486	79909-81486	98.8%	112.20	90.40	76.29	64.11	34.62	34.62	101.30	70.20	34.62	0.37	0.28	0.14	-1.02	-1.72	Frag>80[4257,4258]
YML095C	RAD10	"Single-stranded DNA endonuclease (with Rad1p), cleaves single-stranded DNA during nucleotide excision repair and double-strand break repair; subunit of Nucleotide Excision Repair Factor 1 (NEF1); homolog of human ERCC1 protein"	Verified	chr13:81481-82113	81481-82113	99.3%	66.82	52.50	42.95	66.82	103.41	60.45	59.66	54.89	81.93	0.22	0.22	0.34	0.58	0.75	Covered[4258]
YML094W	GIM5	Subunit of the heterohexameric cochaperone prefoldin complex which binds specifically to cytosolic chaperonin and transfers target proteins to it	Verified	chr13:82275-82849	82275-82290,82374-82849	98.7%	325.52	222.51	220.45	255.47	162.76	84.47	274.01	237.96	123.62	1.01	0.97	0.51	-0.94	-0.98	Matched[4259]
YML094C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene GIM5/YML094W; deletion confers sensitivity to GSAO"	Dubious	chr13:82219-82620	82219-82620	98.9%	216.22	120.68	130.74	125.71	105.59	57.83	168.45	128.22	81.71	0.62	0.52	0.34	-0.65	-0.65	Matched[4259]
YML093W	UTP14	"Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA"	Verified	chr13:83090-85789	83090-85789	98.2%	251.26	130.91	149.78	111.67	11.32	3.77	191.09	130.72	7.55	0.71	0.53	0.03	-4.11	-3.62	Matched[4260]
YML092C	PRE8	20S proteasome beta-type subunit	Verified	chr13:85987-86739	85987-86739	98.9%	608.26	487.41	601.54	550.52	839.21	578.72	547.83	576.03	708.96	2.02	2.34	2.94	0.30	0.43	Matched[4261]
YML091C	RPM2	"Protein subunit of mitochondrial RNase P, has roles in nuclear transcription, cytoplasmic and mitochondrial RNA processing, and mitochondrial translation; distributed to mitochondria, cytoplasmic processing bodies, and the nucleus"	Verified	chr13:87123-90731	87123-90731	99.1%	117.66	137.78	221.62	304.63	244.54	258.52	127.72	263.13	251.53	0.47	1.07	1.04	-0.07	0.41	Matched[4262]
YML090W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF YML089C; exhibits growth defect on a non-fermentable (respiratory) carbon source"	Dubious	chr13:90744-91130	90744-91130	98.8%	60.14	83.68	138.59	203.97	109.83	133.36	71.91	171.28	121.60	0.27	0.70	0.50	-0.49	0.11	Covered/w/another[4262]
YML089C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data; expression induced by calcium shortage"	Dubious	chr13:91041-91409	91041-91409	94.8%	8.58	8.58	5.72	2.86	2.86	8.58	8.58	4.29	5.72	0.03	0.02	0.02	0.42	-1.08	Overlap[4262]
YML088W	UFO1	"F-box receptor protein, subunit of the Skp1-Cdc53-F-box receptor (SCF) E3 ubiquitin ligase complex; binds to phosphorylated Ho endonuclease, allowing its ubiquitylation by SCF and subsequent degradation"	Verified	chr13:92235-94241	92235-94241	98.5%	123.88	103.66	102.65	67.76	85.45	74.84	113.77	85.20	80.14	0.42	0.35	0.33	-0.09	0.08	Covered/w/another[4263]
YML087C		Putative protein of unknown function	Uncharacterized	chr13:94431-95369	94431-95369	99.1%	40.82	63.38	50.49	54.79	42.97	35.45	52.10	52.64	39.21	0.19	0.21	0.16	-0.42	-0.19	Covered/w/another[4263]
YML086C	ALO1	"D-Arabinono-1,4-lactone oxidase, catalyzes the final step in biosynthesis of D-erythroascorbic acid, which is protective against oxidative stress"	Verified	chr13:95791-97371	95791-97371	99.0%	366.64	305.96	395.38	394.10	279.13	245.28	336.30	394.74	262.20	1.24	1.60	1.09	-0.59	0.01	Matched[4264]
YML085C	TUB1	"Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules"	Verified	chr13:97941-99400	97941-99259,99376-99400	95.4%	1069.28	1275.97	1052.91	1068.50	1024.05	937.48	1172.62	1060.70	980.76	4.33	4.31	4.06	-0.11	0.36	Frag>80[4265,4266]
YML084W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr13:99489-99797	99489-99797	99.2%	0.00	3.26	0.00	0.00	9.79	3.26	1.63	0.00	6.52	0.01	0.00	0.03	Inf	0.19	Overlap[4267]
YML083C		Putative protein of unknown function; strong increase in transcript abundance during anaerobic growth compared to aerobic growth; cells deleted for YML083C do not exhibit growth defects in anerobic or anaerobic conditions	Uncharacterized	chr13:99794-101050	99794-101050	98.6%	6.45	24.20	8.87	12.91	29.85	37.92	15.33	10.89	33.88	0.06	0.04	0.14	1.64	2.13	Frag<80[4267]
YML082W		Putative protein predicted to have carbon-sulfur lyase activity; green fluorescent protein (GFP)-fusion protein localizes to the nucleus and the cytoplasm; YNML082W is not an essential gene	Uncharacterized	chr13:101862-103811	101862-103811	98.4%	105.28	91.21	77.14	58.89	14.07	16.16	98.24	68.01	15.11	0.36	0.28	0.06	-2.17	-1.29	Matched[4268]
YML081C-A	ATP18	"Subunit of the mitochondrial F1F0 ATP synthase, which is a large enzyme complex required for ATP synthesis; termed subunit I or subunit j; does not correspond to known ATP synthase subunits in other organisms"	Verified	chr13:103983-104162	103983-104162	98.6%	1093.21	1121.39	1093.21	1160.84	1893.40	1143.93	1107.30	1127.03	1518.67	4.09	4.57	6.29	0.43	-0.41	Matched[4269]
YML081W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; YML081w is not an essential gene	Uncharacterized	chr13:104777-108532	104777-108532	99.0%	130.39	135.76	95.71	83.88	51.35	52.15	133.07	89.79	51.75	0.49	0.36	0.21	-0.79	-0.61	Matched[4270]
YML080W	DUS1	"Dihydrouridine synthase, member of a widespread family of conserved proteins including Smm1p, Dus3p, and Dus4p; modifies pre-tRNA(Phe) at U17"	Verified	chr13:108806-110077	108806-110077	98.5%	73.41	55.06	56.65	38.30	12.77	3.19	64.23	47.48	7.98	0.24	0.19	0.03	-2.57	-1.63	Matched[4271]
YML079W		"Non-essential protein of unknown function with structural resemblance to plant storage and ligand binding proteins (canavalin, glycinin, auxin binding protein) and to some enzymes (epimerase, germin); localizes to the nucleus and cytoplasm"	Uncharacterized	chr13:110247-110852	110247-110852	98.6%	527.38	505.62	467.11	411.86	691.45	485.52	516.50	439.48	588.49	1.91	1.78	2.44	0.42	1.30	Covered/w/another[4272]
YML078W	CPR3	"Mitochondrial peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; involved in protein refolding after import into mitochondria"	Verified	chr13:111002-111550	111002-111550	98.6%	923.50	1073.11	873.63	886.56	1102.66	788.67	998.31	880.10	945.67	3.69	3.57	3.92	0.10	0.20	Matched[4272]
YML077W	BET5	"Component of the TRAPP (transport protein particle) complex, which plays an essential role in the vesicular transport from endoplasmic reticulum to Golgi"	Verified	chr13:111865-112344	111865-112344	98.7%	253.32	192.10	189.99	206.88	236.43	168.88	222.71	198.43	202.66	0.82	0.81	0.84	0.03	0.08	Matched[4273]
YML076C	WAR1	"Homodimeric Zn2Cys6 zinc finger transcription factor; binds to a weak acid response element to induce transcription of PDR12 and FUN34, encoding an acid transporter and a putative ammonia transporter, respectively"	Verified	chr13:112513-115347	112513-115347	99.1%	65.16	63.02	46.29	35.25	46.29	63.38	64.09	40.77	54.83	0.24	0.17	0.23	0.43	0.93	Matched[4274]
YML075C	HMG1	"One of two isozymes of HMG-CoA reductase that catalyzes the conversion of HMG-CoA to mevalonate, which is a rate-limiting step in sterol biosynthesis; localizes to the nuclear envelope; overproduction induces the formation of karmellae"	Verified	chr13:115734-118898	115734-118898	98.5%	149.46	150.11	129.58	83.39	62.22	50.04	149.79	106.49	56.13	0.55	0.43	0.23	-0.92	-0.23	Covered[4275]
YML074C	FPR3	Nucleolar peptidyl-prolyl cis-trans isomerase (PPIase); FK506 binding protein; phosphorylated by casein kinase II (Cka1p-Cka2p-Ckb1p-Ckb2p) and dephosphorylated by Ptp1p	Verified	chr13:120089-121324	120089-121324	98.6%	1968.33	1399.50	1604.71	1548.07	1598.14	1700.74	1683.92	1576.39	1649.44	6.22	6.40	6.83	0.07	0.22	Frag>80[4276,4277]
YML073C	RPL6A	"N-terminally acetylated protein component of the large (60S) ribosomal subunit, has similarity to Rpl6Bp and to rat L6 ribosomal protein; binds to 5.8S rRNA"	Verified	chr13:123227-124172	123227-123742,124158-124172	85.5%	7186.79	6099.08	6063.85	5209.54	1226.42	673.76	6642.94	5636.70	950.09	24.52	22.88	3.94	-2.57	-3.14	Matched[4280]
YML072C	TCB3	"Lipid-binding protein, localized to the bud via specific mRNA transport; non-tagged protein detected in a phosphorylated state in mitochondria; GFP-fusion protein localizes to the cell periphery; C-termini of Tcb1p, Tcb2p and Tcb3p interact"	Verified	chr13:124730-129367	124730-129367	99.1%	347.74	509.87	407.15	395.62	261.13	423.91	428.80	401.39	342.52	1.58	1.63	1.42	-0.23	0.52	Frag>80[4281,4282,4283]
YML071C	COG8	"Component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering complex that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments"	Verified	chr13:129749-131572	129749-131572	97.3%	166.84	144.30	149.37	125.70	175.86	148.81	155.57	137.53	162.33	0.57	0.56	0.67	0.24	0.58	Matched[4284]
YML070W	DAK1	"Dihydroxyacetone kinase, required for detoxification of dihydroxyacetone (DHA); involved in stress adaptation"	Verified	chr13:133475-135229	133475-135229	98.7%	334.42	515.79	382.36	373.70	1092.22	933.38	425.11	378.03	1012.80	1.57	1.53	4.20	1.42	1.87	Matched[4285]
YML069W	POB3	"Subunit of the heterodimeric FACT complex (Spt16p-Pob3p), which facilitates RNA Pol II transcription elongation through nucleosomes by destabilizing and then reassembling nucleosome structure; interacts with DNA polymerase alpha (Pol1p)"	Verified	chr13:135500-137158	135500-137158	98.5%	417.27	417.27	472.95	428.29	284.51	218.43	417.27	450.62	251.47	1.54	1.83	1.04	-0.84	-0.65	Matched[4286]
YML068W	ITT1	"Protein that modulates the efficiency of translation termination, interacts with translation release factors eRF1 (Sup45p) and eRF3 (Sup35p) in vitro, contains a zinc finger domain characteristic of the TRIAD class of proteins"	Verified	chr13:137550-138944	137550-138944	98.6%	80.70	88.70	80.70	71.98	123.60	76.34	84.70	76.34	99.97	0.31	0.31	0.41	0.39	0.20	Matched[4287]
YML067C	ERV41	"Protein localized to COPII-coated vesicles, forms a complex with Erv46p; involved in the membrane fusion stage of transport; has homology to human ERGIC2 (PTX1) protein"	Verified	chr13:139063-140214	139063-140090,140184-140214	99.1%	361.18	338.31	363.09	303.05	386.91	219.19	349.75	333.07	303.05	1.29	1.35	1.26	-0.14	-0.41	Matched[4288]
YML066C	SMA2	Protein of unknown function involved in the assembly of the prospore membrane during sporulation	Verified	chr13:140424-141533	140424-141533	99.1%	14.55	20.01	14.55	10.00	30.01	17.28	17.28	12.28	23.64	0.06	0.05	0.10	0.95	0.81	
YML065W	ORC1	"Largest subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; exhibits ATPase activity"	Verified	chr13:142210-144954	142210-144954	98.5%	107.28	84.34	86.19	72.14	91.37	85.82	95.81	79.16	88.60	0.35	0.32	0.37	0.16	0.32	Covered/w/another[4289]
YML064C	TEM1	GTP-binding protein of the ras superfamily involved in termination of M-phase; controls actomyosin and septin dynamics during cytokinesis	Verified	chr13:145139-145876	145139-145876	99.1%	116.18	120.28	139.42	98.41	158.55	88.84	118.23	118.91	123.70	0.44	0.48	0.51	0.06	0.23	Covered/w/another[4289]
YML063W	RPS1B	Ribosomal protein 10 (rp10) of the small (40S) subunit; nearly identical to Rps1Ap and has similarity to rat S3a ribosomal protein	Verified	chr13:146482-147249	146482-147249	73.6%	10429.17	7800.22	8707.18	7234.48	1729.06	1440.88	9114.70	7970.83	1584.97	33.65	32.36	6.57	-2.33	-2.16	Matched[4290]
YML062C	MFT1	"Subunit of the THO complex, which is a nuclear complex comprised of Hpr1p, Mft1p, Rlr1p, and Thp2p, that is involved in transcription elongation and mitotic recombination; involved in telomere maintenance"	Verified	chr13:147505-148683	147505-148683	99.5%	142.39	168.82	155.18	131.31	196.11	123.63	155.61	143.24	159.87	0.57	0.58	0.66	0.16	-0.13	Covered/w/another[4291]
YML061C	PIF1	DNA helicase involved in telomere formation and elongation; acts as a catalytic inhibitor of telomerase; also plays a role in repair and recombination of mitochondrial DNA	Verified	chr13:148953-151532	148953-151532	99.2%	105.51	83.24	98.09	75.03	60.96	38.30	94.37	86.56	49.63	0.35	0.35	0.21	-0.80	-0.37	Covered/w/another[4291]
YML060W	OGG1	"Mitochondrial glycosylase/lyase that specifically excises 7,8-dihydro-8-oxoguanine residues located opposite cytosine or thymine residues in DNA, repairs oxidative damage to mitochondrial DNA"	Verified	chr13:151871-153001	151871-153001	98.6%	76.24	54.71	74.45	53.82	23.32	7.18	65.48	64.13	15.25	0.24	0.26	0.06	-2.07	-2.05	Matched[4292]
YML059C	NTE1	"Serine esterase that deacylates exogenous lysophospholipids, homolog of human neuropathy target esterase (NTE); mammalian NTE1 deacylates phosphatidylcholine to glycerophosphocholine"	Verified	chr13:153219-158258	153219-158258	98.8%	105.99	138.51	119.64	89.13	71.26	114.02	122.25	104.38	92.64	0.45	0.42	0.38	-0.17	0.52	Matched[4293]
YML058W-A	HUG1	"Protein involved in the Mec1p-mediated checkpoint pathway that responds to DNA damage or replication arrest, transcription is induced by DNA damage"	Verified	chr13:158760-158966	158760-158966	99.0%	9.76	58.57	4.88	9.76	34.17	29.29	34.17	7.32	31.73	0.13	0.03	0.13	2.12	0.83	
YML058W	SML1	Ribonucleotide reductase inhibitor involved in regulating dNTP production; regulated by Mec1p and Rad53p during DNA damage and S phase	Verified	chr13:159383-159697	159383-159697	98.9%	1891.36	1955.58	2042.28	1666.58	3924.00	2511.10	1923.47	1854.43	3217.55	7.10	7.53	13.33	0.79	0.67	Matched[4294]
YML057W	CMP2	"Calcineurin A; one isoform (the other is CNA1) of the catalytic subunit of calcineurin, a Ca++/calmodulin-regulated protein phosphatase which regulates Crz1p (a stress-response transcription factor), the other calcineurin subunit is CNB1"	Verified	chr13:160180-161994	160180-161994	98.7%	203.16	242.79	263.44	237.77	360.00	305.86	222.98	250.60	332.93	0.82	1.02	1.38	0.41	0.76	Matched[4295]
YML057C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene CMP2/YML057W"	Dubious	chr13:160023-160412	160023-160412	98.9%	103.74	111.52	137.45	150.42	160.80	173.76	107.63	143.94	167.28	0.40	0.58	0.69	0.22	-0.06	Covered/w/another[4295]
YML056C	IMD4	"Inosine monophosphate dehydrogenase, catalyzes the first step of GMP biosynthesis, member of a four-gene family in S. cerevisiae, constitutively expressed"	Verified	chr13:162194-164176	162194-163308,163717-164176	80.9%	1141.03	873.43	844.39	700.00	94.95	43.16	1007.23	772.19	69.06	3.72	3.13	0.29	-3.48	-3.12	Frag>80[4296,4297]
YML055W	SPC2	"Subunit of signal peptidase complex (Spc1p, Spc2p, Spc3p, Sec11p), which catalyzes cleavage of N-terminal signal sequences of proteins targeted to the secretory pathway; homologous to mammalian SPC25"	Verified	chr13:164790-165326	164790-165326	98.7%	460.34	450.91	339.60	356.58	320.73	209.42	455.62	348.09	265.07	1.68	1.41	1.10	-0.39	-0.90	Matched[4298]
YML054C	CYB2	"Cytochrome b2 (L-lactate cytochrome-c oxidoreductase), component of the mitochondrial intermembrane space, required for lactate utilization; expression is repressed by glucose and anaerobic conditions"	Verified	chr13:165533-167308	165533-167308	99.0%	25.02	40.38	43.79	38.67	329.30	266.17	32.70	41.23	297.74	0.12	0.17	1.23	2.85	3.11	Covered/w/another[4299]
YML054C-A		Putative protein of unknown function	Uncharacterized	chr13:167623-167781	167623-167781	98.0%	6.42	38.50	32.09	12.83	25.67	25.67	22.46	22.46	25.67	0.08	0.09	0.11	0.19	NaN	Covered/w/another[4299]
YML053C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and the nucleus; YML053C is not an essential gene	Uncharacterized	chr13:169116-169754	169116-169754	97.3%	320.13	273.48	307.26	299.22	278.30	267.04	296.80	303.24	272.67	1.10	1.23	1.13	-0.15	0.26	Frag>80[4300,4301,4302,4303]
YML052W	SUR7	"Putative integral membrane protein; component of eisosomes; associated with endocytosis, along with Pil1p and Lsp1p; sporulation and plasma membrane sphingolipid content are altered in mutants"	Verified	chr13:170402-171310	170402-171310	98.7%	665.18	700.84	711.98	655.15	674.09	545.96	683.01	683.57	610.03	2.52	2.77	2.53	-0.16	0.03	Matched[4304]
YML051W	GAL80	Transcriptional regulator involved in the repression of GAL genes in the absence of galactose; inhibits transcriptional activation by Gal4p; inhibition relieved by Gal3p or Gal1p binding	Verified	chr13:171594-172901	171594-172901	99.0%	251.83	244.87	281.95	242.56	179.21	149.86	248.35	262.25	164.54	0.92	1.06	0.68	-0.67	-0.16	Covered/w/another[4305]
YML050W		Putative protein of unknown function; non-essential gene	Uncharacterized	chr13:173139-174074	173139-174074	98.8%	41.09	42.17	60.55	51.90	97.31	43.25	41.63	56.23	70.28	0.15	0.23	0.29	0.32	0.24	Covered/w/another[4305]
YML049C	RSE1	Protein involved in pre-mRNA splicing; component of the pre-spliceosome; associates with U2 snRNA; involved in ER to Golgi transport	Verified	chr13:174220-178305	174220-178305	98.8%	100.54	82.47	79.49	83.46	95.34	100.79	91.50	81.48	98.07	0.34	0.33	0.41	0.27	0.60	
YML048W	GSF2	"ER localized integral membrane protein that may promote secretion of certain hexose transporters, including Gal2p; involved in glucose-dependent repression"	Verified	chr13:178426-179637	178426-179637	98.7%	770.07	602.01	930.60	881.27	744.15	618.73	686.04	905.94	681.44	2.53	3.68	2.82	-0.41	0.05	Matched[4306]
YML047W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr13:179893-180258	179893-180258	99.5%	35.71	16.48	19.23	13.74	19.23	8.24	26.10	16.48	13.74	0.10	0.07	0.06	-0.26	0.11	Matched[4307]
YML047C	PRM6	"Pheromone-regulated protein, predicted to have 2 transmembrane segments; regulated by Ste12p during mating"	Verified	chr13:180017-181075	180017-181075	99.4%	11.40	10.45	7.60	9.50	3.80	4.75	10.93	8.55	4.28	0.04	0.03	0.02	-1.00	-1.20	Frag<80[4307]
YML046W	PRP39	"U1 snRNP protein involved in splicing, contains multiple tetriatricopeptide repeats"	Verified	chr13:181474-183363	181474-183363	99.1%	132.97	124.96	125.50	113.21	51.80	44.32	128.97	119.35	48.06	0.48	0.48	0.20	-1.31	-0.82	Matched[4308]
YML043C	RRN11	"Protein required for rDNA transcription by RNA polymerase I, component of the core factor (CF) of rDNA transcription factor, which also contains Rrn6p and Rrn7p"	Verified	chr13:190244-191767	190244-191767	99.3%	125.49	110.30	52.18	67.37	12.55	15.85	117.90	59.77	14.20	0.44	0.24	0.06	-2.07	-2.10	Matched[4309]
YML042W	CAT2	"Carnitine acetyl-CoA transferase present in both mitochondria and peroxisomes, transfers activated acetyl groups to carnitine to form acetylcarnitine which can be shuttled across membranes"	Verified	chr13:192788-194800	192788-194800	98.9%	20.59	36.66	21.09	26.62	178.79	149.16	28.63	23.85	163.97	0.11	0.10	0.68	2.78	2.20	Matched[4311]
YML041C	VPS71	"Nucleosome-binding component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; required for vacuolar protein sorting"	Verified	chr13:194913-195755	194913-195755	99.2%	76.53	76.53	90.88	68.16	110.01	66.96	76.53	79.52	88.49	0.28	0.32	0.37	0.15	0.50	Matched[4312]
YML038C	YMD8	"Putative nucleotide sugar transporter, has similarity to Vrg4p"	Verified	chr13:202775-204103	202775-204103	98.9%	253.99	219.77	245.63	165.78	153.61	137.64	236.88	205.70	145.63	0.87	0.83	0.60	-0.50	-0.13	Matched[4314]
YML037C		Putative protein of unknown function with some characteristics of a transcriptional activator; may be a target of Dbf2p-Mob1p kinase; GFP-fusion protein co-localizes with clathrin-coated vesicles; YML037C is not an essential gene	Uncharacterized	chr13:204386-205408	204386-205408	99.1%	17.75	31.55	23.66	20.70	4.93	6.90	24.65	22.18	5.92	0.09	0.09	0.02	-1.91	-0.08	Frag<80[4315]
YML036W	CGI121	"Protein involved in telomere uncapping and elongation as component of the KEOPS protein complex with Bud32p, Kae1p, Pcc1p, and Gon7p; also shown to be a component of the EKC protein complex; homolog of human CGI-121"	Verified	chr13:205642-206293	205642-206097,206204-206293	98.8%	198.42	159.48	157.63	114.97	191.01	70.47	178.95	136.30	130.74	0.66	0.55	0.54	-0.06	-0.31	Matched[4316]
YML035C	AMD1	"AMP deaminase, tetrameric enzyme that catalyzes the deamination of AMP to form IMP and ammonia; may be involved in regulation of intracellular adenine nucleotide pools"	Verified	chr13:206428-208860	206428-208860	99.0%	268.62	240.81	259.90	233.33	240.39	291.46	254.71	246.62	265.92	0.94	1.00	1.10	0.11	0.70	Matched[4317]
YML034W	SRC1	"Inner nuclear membrane (INM) protein with a putative role in sister chromatid segregation, potentially phosphorylated by Cdc28p; contains helix-extension-helix (HEH) motif, nuclear localization signal sequence"	Verified	chr13:209525-212155	209525-211444,211571-212155	97.9%	128.89	151.33	113.39	108.91	164.79	131.75	140.11	111.15	148.27	0.52	0.45	0.61	0.42	0.66	Covered/w/another[4318]
YML034C-A		"Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr13:209428-209826	209428-209826	98.1%	76.64	107.29	48.54	38.32	58.75	56.20	91.96	43.43	57.48	0.34	0.18	0.24	0.40	0.24	Covered/w/another[4318]
YML032C	RAD52	Protein that stimulates strand exchange by facilitating Rad51p binding to single-stranded DNA; anneals complementary single-stranded DNA; involved in the repair of double-strand breaks in DNA during vegetative growth and meiosis	Verified	chr13:212515-213930	212515-213930	99.1%	121.83	104.02	136.08	107.58	210.89	176.69	112.93	121.83	193.79	0.42	0.49	0.80	0.67	0.97	Covered/w/another[4318]
YML031W	NDC1	"Nuclear envelope protein with multiple putative transmembrane domains, required for nuclear pore complex assembly and spindle pole body duplication; required for meiosis II"	Verified	chr13:214189-216156	214189-216156	98.8%	237.13	210.90	194.95	166.15	103.39	80.76	224.02	180.55	92.08	0.83	0.73	0.38	-0.97	-0.35	Matched[4319]
YML031C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF NDC1/YML031W; questionable ORF from MIPS"	Dubious	chr13:214086-214421	214086-214421	98.5%	84.56	114.76	69.46	81.54	36.24	42.28	99.66	75.50	39.26	0.37	0.31	0.16	-0.94	NaN	Covered/w/another[4319]
YML030W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to mitochondria; YML030W is not an essential gene	Uncharacterized	chr13:216435-216914	216435-216914	97.9%	451.18	393.72	415.00	385.21	563.98	204.31	422.45	400.11	384.14	1.56	1.62	1.59	-0.06	-0.30	Frag>80[4320,4321]
YML029W	USA1	"Protein involved in ER-associated protein degradation (ERAD); component of the Hrd1p complex; interacts with the U1 snRNP-specific protein, Snp1p"	Verified	chr13:217362-219878	217362-219878	98.8%	82.07	83.28	75.23	76.04	94.14	113.45	82.68	75.64	103.80	0.31	0.31	0.43	0.46	1.33	Matched[4322]
YML028W	TSA1	"Ubiquitous housekeeping thioredoxin peroxidase, reduces reactive oxygen, nitrogen and sulfur species using thioredoxin as hydrogen donor; mediates redox regulation of the nuclear localization of Yap1p; deletion results in mutator phenotype"	Verified	chr13:220138-220728	220138-220728	98.7%	9447.74	4005.43	8724.16	6136.74	11997.43	7055.80	6726.58	7430.45	9526.61	24.83	30.16	39.47	0.36	-0.36	Frag>80[4323,4324]
YML027W	YOX1	"Homeodomain-containing transcriptional repressor, binds to Mcm1p and to early cell cycle boxes (ECBs) in the promoters of cell cycle-regulated genes expressed in M/G1 phase; expression is cell cycle-regulated; potential Cdc28p substrate"	Verified	chr13:221406-222563	221406-222563	98.7%	171.43	166.19	127.70	93.59	44.61	24.49	168.81	110.65	34.55	0.62	0.45	0.14	-1.68	-1.51	Matched[4325]
YML026C	RPS18B	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps18Ap and has similarity to E. coli S13 and rat S18 ribosomal proteins	Verified	chr13:222987-223828	222987-223380,223782-223828	54.2%	8602.83	6199.90	7434.85	6392.46	1255.89	766.09	7401.36	6913.66	1010.99	27.32	28.06	4.19	-2.77	-3.94	Frag>80[4326,4327]
YML025C	YML6	"Mitochondrial ribosomal protein of the large subunit, has similarity to E. coli L4 ribosomal protein and human mitoribosomal MRP-L4 protein; essential for viability, unlike most other mitoribosomal proteins"	Verified	chr13:224406-225365	224406-225239,225339-225365	98.8%	199.75	215.02	217.37	232.64	278.47	191.52	207.38	225.01	234.99	0.77	0.91	0.97	0.06	0.61	Matched[4328]
YML024W	RPS17A	Ribosomal protein 51 (rp51) of the small (40s) subunit; nearly identical to Rps17Bp and has similarity to rat S17 ribosomal protein	Verified	chr13:225889-226697	225889-225891,226290-226697	46.8%	11068.92	8296.49	9726.92	7901.17	2814.04	2299.09	9682.71	8814.04	2556.57	35.74	35.78	10.59	-1.79	-3.00	Matched[4329]
YML023C	NSE5	Essential subunit of the Mms21-Smc5-Smc6 complex; required for cell viability and DNA repair	Verified	chr13:226994-228664	226994-228664	99.2%	108.60	124.89	71.80	68.18	50.68	37.41	116.75	69.99	44.04	0.43	0.28	0.18	-0.67	-0.53	Matched[4330]
YML022W	APT1	"Adenine phosphoribosyltransferase, catalyzes the formation of AMP from adenine and 5-phosphoribosylpyrophosphate; involved in the salvage pathway of purine nucleotide biosynthesis"	Verified	chr13:228937-229500	228937-229500	98.8%	794.92	489.87	583.18	565.23	156.11	96.90	642.39	574.21	126.50	2.37	2.33	0.52	-2.18	-1.89	Matched[4331]
YML021C	UNG1	"Uracil-DNA glycosylase, required for repair of uracil in DNA formed by spontaneous cytosine deamination, not required for strand-specific mismatch repair, cell-cycle regulated, expressed in late G1, localizes to mitochondria and nucleus"	Verified	chr13:229734-230813	229734-230813	99.1%	185.03	192.51	184.10	156.06	173.82	165.41	188.77	170.08	169.61	0.70	0.69	0.70	-0.00	-0.09	Matched[4332]
YML020W		Putative protein of unknown function	Uncharacterized	chr13:231149-233143	231149-233143	98.7%	71.12	87.37	74.16	79.75	73.66	82.29	79.24	76.96	77.97	0.29	0.31	0.32	0.02	0.56	Covered/w/another[4333]
YML019W	OST6	"Subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes asparagine-linked glycosylation of newly synthesized proteins; similar to and partially functionally redundant with Ost3p"	Verified	chr13:233457-234455	233457-234455	99.1%	270.81	229.38	279.90	204.12	143.49	91.95	250.09	242.01	117.72	0.92	0.98	0.49	-1.04	-0.98	
YML018C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the membrane of the vacuole; YML018C is not an essential gene	Uncharacterized	chr13:234771-235952	234771-235952	98.7%	301.74	321.45	233.16	176.58	66.00	58.29	311.59	204.87	62.15	1.15	0.83	0.26	-1.72	-1.47	Matched[4334]
YML017W	PSP2	Asn rich cytoplasmic protein that contains RGG motifs; high-copy suppressor of group II intron-splicing defects of a mutation in MRS2 and of a conditional mutation in POL1 (DNA polymerase alpha); possible role in mitochondrial mRNA splicing	Verified	chr13:236588-238731	236588-236591,236954-238731	97.6%	193.70	223.01	168.98	154.61	78.74	97.14	208.35	161.80	87.94	0.77	0.66	0.36	-0.88	-0.45	Covered/w/another[4335]
YML016C	PPZ1	"Serine/threonine protein phosphatase Z, isoform of Ppz2p; involved in regulation of potassium transport, which affects osmotic stability, cell cycle progression, and halotolerance"	Verified	chr13:239458-241536	239458-241536	98.9%	161.45	152.70	128.87	95.80	102.61	75.38	157.08	112.34	88.99	0.58	0.46	0.37	-0.34	-0.20	Covered/w/another[4335]
YML015C	TAF11	"TFIID subunit (40 kDa), involved in RNA polymerase II transcription initiation, similar to histone H3 with atypical histone fold motif of Spt3-like transcription factors"	Verified	chr13:241989-243029	241989-243029	99.1%	165.79	148.34	129.92	127.01	123.13	92.11	157.07	128.46	107.62	0.58	0.52	0.45	-0.26	0.18	Matched[4336]
YML014W	TRM9	"tRNA methyltransferase, catalyzes the esterification of modified uridine nucleotides in tRNAs, creating 5-methylcarbonylmethyluridine in tRNA(Arg3) and 5-methylcarbonylmethyl-2-thiouridine in tRNA(Glu); may have a role in stress response"	Verified	chr13:243225-244064	243225-244064	98.2%	146.75	104.30	93.39	72.77	42.45	27.89	125.52	83.08	35.17	0.46	0.34	0.15	-1.24	-0.88	Covered/w/another[4337]
YML013W	UBX2	Protein involved in ER-associated protein degradation; proposed to coordinate the assembly of proteins involved in ERAD; contains a UBX (ubiquitin regulatory X) domain and a ubiquitin-associated (UBA) domain	Verified	chr13:244149-245903	244149-245903	98.6%	132.90	175.66	122.50	139.26	152.55	202.82	154.28	130.88	177.68	0.57	0.53	0.74	0.44	1.05	Covered/w/another[4337]
YML012C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene SEL1"	Dubious	chr13:245537-245914	245537-245914	98.4%	177.42	223.12	155.91	177.42	268.82	231.18	200.27	166.67	250.00	0.74	0.68	1.04	0.58	0.29	Covered/w/another[4337]
YML012W	ERV25	"Protein that forms a heterotrimeric complex with Erp1, Erp2p, and Emp24, member of the p24 family involved in endoplasmic reticulum to Golgi transport"	Verified	chr13:246116-246751	246116-246751	98.4%	1602.88	1633.24	1582.10	1537.36	2433.88	1483.02	1618.06	1559.73	1958.45	5.97	6.33	8.11	0.33	-0.66	Matched[4338]
YML011C	RAD33	Protein involved in nucleotide excision repair; green fluorescent protein (GFP)-fusion protein localizes to the nucleus	Verified	chr13:246895-247428	246895-247428	99.3%	132.03	98.08	109.40	98.08	122.60	56.59	115.06	103.74	89.59	0.42	0.42	0.37	-0.21	-0.53	Matched[4339]
YML010W	SPT5	Protein that forms a complex with Spt4p and mediates both activation and inhibition of transcription elongation; Spt4p-Spt5p complex also plays a role in pre-mRNA processing	Verified	chr13:247677-250868	247677-250868	98.0%	373.26	326.28	351.85	340.98	110.25	186.63	349.77	346.41	148.44	1.29	1.41	0.62	-1.22	-0.21	Matched[4340]
YML009W-B		"Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr13:250435-250911	250435-250911	97.9%	629.72	541.90	708.97	561.18	299.87	321.29	585.81	635.07	310.58	2.16	2.58	1.29	-1.03	-0.35	Covered/w/another[4340]
YML009C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr13:250675-251001	250675-251001	98.7%	734.41	632.15	715.82	647.64	331.57	356.36	683.28	681.73	343.96	2.52	2.77	1.43	-0.99	-0.55	Covered/w/another[4340]
YML009C	MRPL39	Mitochondrial ribosomal protein of the large subunit	Verified	chr13:251304-251516	251304-251516	99.1%	781.37	672.45	719.81	653.51	857.14	530.39	726.91	686.66	693.76	2.68	2.79	2.87	0.01	-0.30	Matched[4341]
YML008C	ERG6	"Delta(24)-sterol C-methyltransferase, converts zymosterol to fecosterol in the ergosterol biosynthetic pathway by methylating position C-24; localized to both lipid particles and mitochondrial outer membrane"	Verified	chr13:251839-252990	251839-252990	99.2%	1035.49	1124.77	998.72	891.06	506.80	383.38	1080.13	944.89	445.09	3.99	3.84	1.84	-1.09	-0.36	Frag>80[4342,4343]
YML007C-A		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to mitochondria	Uncharacterized	chr13:253162-253272	253162-253272	98.2%	36.71	27.53	27.53	27.53	64.24	18.36	32.12	27.53	41.30	0.12	0.11	0.17	0.58	1.09	Covered/w/another[4344]
YML007W	YAP1	Basic leucine zipper (bZIP) transcription factor required for oxidative stress tolerance; activated by H2O2 through the multistep formation of disulfide bonds and transit from the cytoplasm to the nucleus; mediates resistance to cadmium	Verified	chr13:253848-255800	253848-255800	98.7%	232.95	194.04	212.72	176.40	315.96	213.75	213.49	194.56	264.86	0.79	0.79	1.10	0.45	0.48	Covered/w/another[4344]
YML006C	GIS4	"CAAX box containing protein of unknown function, proposed to be involved in the RAS/cAMP signaling pathway"	Verified	chr13:256092-258416	256092-258416	99.2%	84.55	79.78	69.81	56.37	45.09	29.48	82.17	63.09	37.29	0.30	0.26	0.15	-0.76	-0.12	Matched[4345]
YML005W	TRM12	S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family; required for wybutosine formation in phenylalanine-accepting tRNA	Verified	chr13:260221-261609	260221-261609	99.0%	64.73	64.00	45.82	36.37	43.64	27.64	64.37	41.09	35.64	0.24	0.17	0.15	-0.21	0.11	Frag>80[4346,4347]
YML004C	GLO1	"Monomeric glyoxalase I, catalyzes the detoxification of methylglyoxal (a by-product of glycolysis) via condensation with glutathione to produce S-D-lactoylglutathione; expression regulated by methylglyoxal levels and osmotic stress"	Verified	chr13:261705-262685	261705-262685	99.0%	598.97	760.55	613.38	658.66	2671.70	2021.27	679.76	636.02	2346.48	2.51	2.58	9.72	1.88	1.73	Frag>80[4347,4348]
YML003W		Putative protein of unknown function	Uncharacterized	chr13:263483-264355	263483-264355	99.2%	34.66	41.59	21.95	33.50	53.14	71.62	38.12	27.73	62.38	0.14	0.11	0.26	1.17	1.72	Covered/w/another[4349]
YML002W		Putative protein of unknown function; expression induced by heat and by calcium shortage	Uncharacterized	chr13:264541-266754	264541-266754	98.9%	84.92	87.66	57.98	57.53	115.51	77.62	86.29	57.76	96.56	0.32	0.23	0.40	0.74	0.96	Covered/w/another[4349]
YML001W	YPT7	"GTPase; GTP-binding protein of the rab family; required for homotypic fusion event in vacuole inheritance, for endosome-endosome fusion, similar to mammalian Rab7"	Verified	chr13:267174-267800	267174-267800	98.9%	921.28	864.81	872.87	855.13	1063.26	622.79	893.04	864.00	843.03	3.30	3.51	3.49	-0.04	-0.61	Frag>80[4350,4351]
YMR001C	CDC5	"Polo-like kinase with similarity to Xenopus Plx1 and S. pombe Plo1p; found at bud neck, nucleus and SPBs; has multiple functions in mitosis and cytokinesis through phosphorylation of substrates; may be a Cdc28p substrate"	Verified	chr13:269019-271136	269019-271136	99.2%	251.77	226.07	187.52	168.01	146.59	60.92	238.92	177.76	103.75	0.88	0.72	0.43	-0.78	-0.91	Matched[4352]
YMR001C-A		Putative protein of unknown function	Uncharacterized	chr13:271347-271577	271347-271577	98.9%	65.68	87.58	70.06	87.58	65.68	52.55	76.63	78.82	59.11	0.28	0.32	0.24	-0.42	NaN	Covered/w/another[4352]
YMR002W	MIC17	Mitochondrial intermembrane space cysteine motif protein; MIC17 is not an essential gene	Verified	chr13:272193-272663	272193-272663	98.7%	1040.77	832.18	1010.66	974.11	1614.91	1004.21	936.48	992.38	1309.56	3.46	4.03	5.43	0.40	0.34	Matched[4353]
YMR003W		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the mitochondria; YMR003W is not an essential gene	Uncharacterized	chr13:273118-273714	273118-273714	99.0%	133.62	111.63	123.47	101.48	86.26	38.90	122.62	112.47	62.58	0.45	0.46	0.26	-0.85	-1.16	Matched[4354]
YMR004W	MVP1	Protein required for sorting proteins to the vacuole; overproduction of Mvp1p suppresses several dominant VPS1 mutations; Mvp1p and Vps1p act in concert to promote membrane traffic to the vacuole	Verified	chr13:274017-275552	274017-275552	98.7%	158.95	149.06	131.91	146.42	212.38	171.49	154.01	139.17	191.93	0.57	0.56	0.80	0.46	0.81	Matched[4355]
YMR005W	TAF4	"TFIID subunit (48 kDa), involved in RNA polymerase II transcription initiation; potential Cdc28p substrate"	Verified	chr13:276045-277211	276045-277211	98.5%	243.64	274.96	247.12	218.40	214.05	216.66	259.30	232.76	215.36	0.96	0.94	0.89	-0.11	0.18	Matched[4356]
YMR006C	PLB2	Phospholipase B (lysophospholipase) involved in phospholipid metabolism; displays transacylase activity in vitro; overproduction confers resistance to lysophosphatidylcholine	Verified	chr13:277561-279681	277561-279681	96.6%	177.69	503.28	194.28	203.56	53.70	45.89	340.49	198.92	49.79	1.26	0.81	0.21	-2.00	-1.75	Matched[4357]
YMR007W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr13:279960-280340	279960-280340	98.7%	74.47	117.02	58.51	29.26	47.87	15.96	95.74	43.88	31.91	0.35	0.18	0.13	-0.46	-0.22	Covered/w/another[4357]
YMR008C	PLB1	"Phospholipase B (lysophospholipase) involved in lipid metabolism, required for deacylation of phosphatidylcholine and phosphatidylethanolamine but not phosphatidylinositol"	Verified	chr13:280590-282584	280590-282584	96.6%	273.86	398.34	276.45	284.75	216.29	255.71	336.10	280.60	236.00	1.24	1.14	0.98	-0.25	0.26	Matched[4358]
YMR009W	ADI1	Acireductone dioxygenease involved in the methionine salvage pathway; ortholog of human MTCBP-1; transcribed with YMR010W and regulated post-transcriptionally by RNase III (Rnt1p) cleavage; ADI1 mRNA is induced in heat shock conditions	Verified	chr13:284101-284640	284101-284640	98.7%	99.47	140.76	125.74	121.99	320.93	208.32	120.11	123.87	264.62	0.44	0.50	1.10	1.10	0.96	Covered/w/another[4360]
YMR010W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YMR010W is not an essential gene; YMR010W mRNA is transcribed with ADI1	Uncharacterized	chr13:285099-286316	285099-286316	99.1%	255.17	265.94	270.91	236.11	186.41	136.70	260.55	253.51	161.55	0.96	1.03	0.67	-0.65	-0.43	Covered/w/another[4360]
YMR011W	HXT2	"High-affinity glucose transporter of the major facilitator superfamily, expression is induced by low levels of glucose and repressed by high levels of glucose"	Verified	chr13:288078-289703	288078-289703	97.6%	214.92	115.97	1021.01	833.19	165.76	43.49	165.44	927.10	104.62	0.61	3.76	0.43	-3.15	-3.30	Matched[4361]
YMR012W	CLU1	"eIF3 component of unknown function; deletion causes defects in mitochondrial organization but not in growth or translation initiation, can rescue cytokinesis and mitochondrial organization defects of the Dictyostelium cluA- mutant"	Verified	chr13:291133-294966	291133-294966	99.0%	673.83	519.14	621.66	610.85	284.08	299.36	596.49	616.25	291.72	2.20	2.50	1.21	-1.08	-0.57	Matched[4362]
YMR013C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified ORF SEC59/YML013C"	Dubious	chr13:296470-296619	296470-296619	99.2%	53.77	60.49	47.05	33.60	26.88	40.32	57.13	40.32	33.60	0.21	0.16	0.14	-0.26	NaN	Covered/w/another[4363]
YMR013C	SEC59	"Dolichol kinase, catalyzes the terminal step in dolichyl monophosphate (Dol-P) biosynthesis; required for viability and for normal rates of lipid intermediate synthesis and protein N-glycosylation"	Verified	chr13:295178-296737	295178-296737	99.0%	114.56	123.62	86.08	62.13	97.73	49.84	119.09	74.11	73.78	0.44	0.30	0.31	-0.01	0.47	Matched[4363]
YMR013W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the characterized snoRNA gene snR73"	Dubious	chr13:298310-298390	298310-298390	99.0%	62.34	24.94	12.47	0.00	37.40	24.94	43.64	6.23	31.17	0.16	0.03	0.13	2.32	-0.18	Covered/w/another[4364]
YMR014W	BUD22	Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern	Verified	chr13:298867-300426	298867-300426	98.3%	225.74	129.18	138.31	103.74	19.57	11.74	177.46	121.02	15.66	0.66	0.49	0.06	-2.95	-2.94	Covered/w/another[4364]
YMR015C	ERG5	"C-22 sterol desaturase, a cytochrome P450 enzyme that catalyzes the formation of the C-22(23) double bond in the sterol side chain in ergosterol biosynthesis; may be a target of azole antifungal drugs"	Verified	chr13:300868-302484	300868-302484	98.9%	332.61	572.07	341.37	340.12	135.05	100.03	452.34	340.74	117.54	1.67	1.38	0.49	-1.54	-1.12	Frag>80[4365,4366]
YMR016C	SOK2	Nuclear protein that plays a regulatory role in the cyclic AMP (cAMP)-dependent protein kinase (PKA) signal transduction pathway; negatively regulates pseudohyphal differentiation; homologous to several transcription factors	Verified	chr13:303235-305592	303235-305592	98.6%	124.24	109.63	102.32	79.53	40.41	33.96	116.93	90.93	37.19	0.43	0.37	0.15	-1.29	-0.53	Matched[4367]
YMR017W	SPO20	"Meiosis-specific subunit of the t-SNARE complex, required for prospore membrane formation during sporulation; similar to but not functionally redundant with Sec9p; SNAP-25 homolog"	Verified	chr13:307488-308681	307488-308681	98.4%	4.25	3.40	3.40	1.70	11.91	7.66	3.83	2.55	9.78	0.01	0.01	0.04	1.94	1.56	
YMR018W		Putative protein of unknown function with similarity to human PEX5Rp (peroxin protein 5 related protein); transcription increases during colony development similar to genes involved in peroxisome biogenesis; YMR018W is not an essential gene	Uncharacterized	chr13:310207-311751	310207-311751	98.9%	17.67	9.81	11.12	9.81	15.70	11.78	13.74	10.47	13.74	0.05	0.04	0.06	0.39	0.73	Frag<80[4368,4369]
YMR019W	STB4	Protein that binds Sin3p in a two-hybrid assay; contains a Zn(II)2Cys6 zinc finger domain characteristic of DNA-binding proteins	Verified	chr13:312155-315004	312155-315004	98.8%	86.98	96.92	58.22	61.06	51.48	49.70	91.95	59.64	50.59	0.34	0.24	0.21	-0.24	-0.27	Covered/w/another[4370]
YMR020W	FMS1	"Polyamine oxidase, converts spermine to spermidine, which is required for the essential hypusination modification of translation factor eIF-5A; also involved in pantothenic acid biosynthesis"	Verified	chr13:315376-316902	315376-316902	98.7%	107.51	205.72	88.93	88.93	247.53	177.85	156.62	88.93	212.69	0.58	0.36	0.88	1.26	1.03	Covered/w/another[4370]
YMR021C	MAC1	Copper-sensing transcription factor involved in regulation of genes required for high affinity copper transport	Verified	chr13:317164-318417	317164-318417	99.0%	91.82	101.49	87.79	74.91	99.07	72.49	96.65	81.35	85.78	0.36	0.33	0.36	0.08	0.58	Covered/w/another[4370]
YMR022W	UBC7	"Ubiquitin conjugating enzyme, involved in the ER-associated protein degradation pathway; requires Cue1p for recruitment to the ER membrane; proposed to be involved in chromatin assembly"	Verified	chr13:318679-319176	318679-319176	98.7%	427.23	482.16	443.50	435.36	1116.89	677.46	454.69	439.43	897.18	1.68	1.78	3.72	1.03	0.83	Matched[4371]
YMR023C	MSS1	"Mitochondrial protein, forms a heterodimer complex with Mto1p that performs the 5-carboxymethylaminomethyl modification of the wobble uridine base in mitochondrial tRNAs; similar to human GTPBP3"	Verified	chr13:319436-321016	319436-321016	99.2%	44.64	51.02	44.00	33.80	72.06	39.54	47.83	38.90	55.80	0.18	0.16	0.23	0.52	0.64	Matched[4372]
YMR024W	MRPL3	Mitochondrial ribosomal protein of the large subunit	Verified	chr13:321874-323046	321874-323046	98.8%	239.80	281.21	280.34	259.64	221.69	179.42	260.50	269.99	200.55	0.96	1.10	0.83	-0.43	0.06	Matched[4373]
YMR025W	CSI1	"Subunit of the Cop9 signalosome, which is required for deneddylation, or removal of the ubiquitin-like protein Rub1p from Cdc53p (cullin); involved in adaptation to pheromone signaling"	Verified	chr13:323299-324186	323299-324186	99.1%	36.36	55.67	53.40	51.13	104.53	72.72	46.02	52.27	88.62	0.17	0.21	0.37	0.76	0.54	Covered/w/another[4374]
YMR026C	PEX12	C3HC4-type RING-finger peroxisomal membrane peroxin required for peroxisome biogenesis and peroxisomal matrix protein import; forms translocation subcomplex with Pex2p and Pex10p; mutations in human homolog cause peroxisomal disorders	Verified	chr13:324235-325434	324235-325434	99.1%	119.39	109.30	118.55	97.53	86.60	71.47	114.35	108.04	79.04	0.42	0.44	0.33	-0.45	0.04	Covered/w/another[4374]
YMR027W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus and cytoplasm; YMR027W is not an essential gene	Uncharacterized	chr13:325876-327288	325876-327288	98.6%	440.62	437.75	460.71	452.10	609.97	457.84	439.18	456.40	533.91	1.62	1.85	2.21	0.23	0.57	Matched[4375]
YMR028W	TAP42	Essential protein involved in the TOR signaling pathway; physically associates with the protein phosphatase 2A and the SIT4 protein phosphatase catalytic subunits	Verified	chr13:327481-328581	327481-328581	98.6%	92.99	111.41	113.25	103.12	164.81	96.68	102.20	108.19	130.75	0.38	0.44	0.54	0.27	0.44	Matched[4376]
YMR029C	FAR8	"Protein involved in G1 cell cycle arrest in response to pheromone, in a pathway different from the Far1p-dependent pathway; interacts with Far3p, Far7p, Far9p, Far10p, and Far11p"	Verified	chr13:328659-330230	328659-330230	99.2%	184.06	243.70	193.04	202.01	393.13	295.65	213.88	197.53	344.39	0.79	0.80	1.43	0.80	0.60	Matched[4377]
YMR030W	RSF1	Protein required for respiratory growth; localized to both the nucleus and mitochondrion; mutant displays decreased transcription of specific nuclear and mitochondrial genes whose products are involved in respiratory growth	Verified	chr13:330792-331922	330792-331922	98.9%	61.68	94.76	66.15	62.57	185.04	164.48	78.22	64.36	174.76	0.29	0.26	0.72	1.44	1.47	Frag>80[4378,4379]
YMR031W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; null mutant displays shortened telomeres; partially overlaps the uncharacterized ORF YMR031C"	Dubious	chr13:334708-335034	334708-335034	98.6%	21.70	46.50	58.90	49.60	62.00	102.30	34.10	54.25	82.15	0.13	0.22	0.34	0.60	2.17	Overlap[4380]
YMR031C		"Protein of unknown function with similarity to Ykl050cp and Uso1p; the authentic, non-tagged protein is detected in a phosphorylated state in highly purified mitochondria in high-throughput studies; YMR031C is not an essential gene"	Uncharacterized	chr13:332211-334742	332211-334742	99.3%	185.76	272.48	305.10	330.55	581.95	513.93	229.12	317.83	547.94	0.85	1.29	2.27	0.79	1.18	Matched[4380]
YMR032W	HOF1	"Bud neck-localized, SH3 domain-containing protein required for cytokinesis; regulates actomyosin ring dynamics and septin localization; interacts with the formins, Bni1p and Bnr1p, and with Cyk3p, Vrp1p, and Bni5p"	Verified	chr13:335297-337306	335297-337306	98.5%	97.47	102.53	84.34	81.31	86.36	72.73	100.00	82.83	79.55	0.37	0.34	0.33	-0.06	0.79	Matched[4381]
YMR030W-A		Putative protein of unknown function	Uncharacterized	chr13:337312-337602	337312-337602	99.1%	76.29	93.63	48.55	34.68	58.95	34.68	84.96	41.61	46.81	0.31	0.17	0.19	0.17	NaN	Covered/w/another[4381]
YMR033W	ARP9	Component of both the SWI/SNF and RSC chromatin remodeling complexes; actin-related protein involved in transcriptional regulation	Verified	chr13:337787-339276	337787-337816,337903-339276	98.9%	279.49	268.68	272.29	223.30	172.88	106.61	274.09	247.79	139.74	1.01	1.01	0.58	-0.83	-0.90	Matched[4382]
YMR034C		"Putative transporter, member of the SLC10 carrier family; identified in a transposon mutagenesis screen as a gene involved in azole resistance; YMR034C is not an essential gene"	Uncharacterized	chr13:339417-340721	339417-340721	97.6%	11.77	14.13	21.19	10.99	47.88	21.19	12.95	16.09	34.54	0.05	0.07	0.14	1.10	0.45	Matched[4383]
YMR035W	IMP2	"Catalytic subunit of the mitochondrial inner membrane peptidase complex, required for maturation of mitochondrial proteins of the intermembrane space; complex contains Imp1p and Imp2p (both catalytic subunits), and Som1p"	Verified	chr13:341141-341674	341141-341674	98.8%	157.38	157.38	146.01	151.69	269.26	163.07	157.38	148.85	216.16	0.58	0.60	0.90	0.54	0.56	Covered/w/another[4384]
YMR036C	MIH1	Protein tyrosine phosphatase involved in cell cycle control; regulates the phosphorylation state of Cdc28p; homolog of S. pombe cdc25	Verified	chr13:341855-343519	341855-343519	99.0%	66.10	53.37	53.37	47.91	106.12	60.64	59.73	50.64	83.38	0.22	0.21	0.35	0.72	1.02	Matched[4384]
YMR037C	MSN2	"Transcriptional activator related to Msn4p; activated in stress conditions, which results in translocation from the cytoplasm to the nucleus; binds DNA at stress response elements of responsive genes, inducing gene expression"	Verified	chr13:344402-346516	344402-346516	98.9%	156.88	153.06	172.67	153.54	116.23	132.49	154.97	163.10	124.36	0.57	0.66	0.52	-0.39	0.56	Matched[4386]
YMR038C	CCS1	"Copper chaperone for superoxide dismutase Sod1p, involved in oxidative stress protection; Met-X-Cys-X2-Cys motif within the N-terminal portion is involved in insertion of copper into Sod1p under conditions of copper deprivation"	Verified	chr13:347510-348259	347510-348259	98.7%	642.77	599.56	637.37	645.47	530.69	418.61	621.17	641.42	474.65	2.29	2.60	1.97	-0.43	0.01	Matched[4388]
YMR039C	SUB1	"Transcriptional coactivator, facilitates elongation by influencing enzymes that modify RNAP II, acts in a peroxide resistance pathway involving Rad2p; suppressor of TFIIB mutations"	Verified	chr13:348643-349521	348643-349521	99.4%	546.11	509.47	486.57	555.26	515.19	411.01	527.79	520.92	463.10	1.95	2.11	1.92	-0.17	-0.05	Matched[4390]
YMR040W	YET2	"Protein of unknown function that may interact with ribosomes, based on co-purification experiments; homolog of human BAP31 protein"	Verified	chr13:350380-350862	350380-350862	98.4%	42.08	73.65	54.71	50.50	130.46	44.19	57.86	52.60	87.32	0.21	0.21	0.36	0.73	0.38	Matched[4392]
YMR041C	ARA2	"NAD-dependent arabinose dehydrogenase, involved in biosynthesis of erythroascorbic acid; similar to plant L-galactose dehydrogenase"	Verified	chr13:350965-351972	350965-351972	99.1%	103.10	84.08	88.08	72.07	373.36	207.20	93.59	80.08	290.28	0.35	0.33	1.20	1.86	1.50	Matched[4393]
YMR042W	ARG80	Transcription factor involved in regulation of arginine-responsive genes; acts with Arg81p and Arg82p	Verified	chr13:352602-353135	352602-353135	98.1%	108.78	99.24	82.06	78.24	106.87	40.08	104.01	80.15	73.47	0.38	0.33	0.30	-0.13	-0.15	Covered/w/another[4394]
YMR043W	MCM1	Transcription factor involved in cell-type-specific transcription and pheromone response; plays a central role in the formation of both repressor and activator complexes	Verified	chr13:353870-354730	353870-354730	94.9%	521.18	446.55	505.28	433.09	533.41	391.50	483.87	469.18	462.46	1.79	1.90	1.92	-0.02	0.29	Covered/w/another[4394]
YMR044W	IOC4	"Member of a complex (Isw1b) with Isw1p and Ioc2p that exhibits nucleosome-stimulated ATPase activity and acts within coding regions to coordinate transcription elongation with termination and processing, contains a PWWP motif"	Verified	chr13:355383-356810	355383-356810	98.0%	198.55	189.27	187.13	201.41	239.26	160.70	193.91	194.27	199.98	0.72	0.79	0.83	0.04	0.08	Matched[4395]
YMR046W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr13:362701-362829	362701-362829	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.09	
YMR047C	NUP116	Subunit of the nuclear pore complex (NPC) that is localized to both sides of the pore; contains a repetitive GLFG motif that interacts with mRNA export factor Mex67p and with karyopherin Kap95p; homologous to Nup100p	Verified	chr13:363363-366704	363363-366704	99.0%	211.88	203.12	197.07	173.50	136.92	166.24	207.50	185.29	151.58	0.77	0.75	0.63	-0.29	0.44	Matched[4397]
YMR048W	CSM3	Protein required for accurate chromosome segregation during meiosis	Verified	chr13:366980-367933	366980-367933	98.4%	80.97	87.36	79.90	77.77	72.44	37.29	84.16	78.84	54.87	0.31	0.32	0.23	-0.52	-0.41	Matched[4398]
YMR049C	ERB1	Protein required for maturation of the 25S and 5.8S ribosomal RNAs; constituent of 66S pre-ribosomal particles; homologous to mammalian Bop1	Verified	chr13:368093-370516	368093-370516	99.1%	231.85	111.55	161.50	116.97	12.07	6.24	171.70	139.23	9.16	0.63	0.57	0.04	-3.93	-3.24	Matched[4399]
YMR052W	FAR3	"Protein involved in G1 cell cycle arrest in response to pheromone, in a pathway different from the Far1p-dependent pathway; interacts with Far7p, Far8p, Far9p, Far10p, and Far11p"	Verified	chr13:379585-380199	379585-380199	98.6%	117.05	89.02	67.59	89.02	138.48	72.54	103.04	78.31	105.51	0.38	0.32	0.44	0.43	0.58	Covered/w/another[4401]
YMR052C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr13:380068-380433	380068-380433	98.9%	99.47	88.42	74.60	121.57	185.13	129.86	93.94	98.09	157.49	0.35	0.40	0.65	0.68	1.05	Covered/w/another[4401]
YMR053C	STB2	Protein that interacts with Sin3p in a two-hybrid assay and is part of a large protein complex with Sin3p and Stb1p	Verified	chr13:380345-382897	380345-382897	99.3%	33.94	49.73	42.62	50.91	117.21	134.18	41.83	46.77	125.70	0.15	0.19	0.52	1.43	1.31	Matched[4401]
YMR054W	STV1	"Subunit a of the vacuolar-ATPase V0 domain, one of two isoforms (Stv1p and Vph1p); Stv1p is located in V-ATPase complexes of the Golgi and endosomes while Vph1p is located in V-ATPase complexes of the vacuole"	Verified	chr13:383302-385974	383302-385974	98.8%	243.21	187.52	227.68	205.33	236.39	200.02	215.36	216.50	218.21	0.80	0.88	0.90	0.01	0.42	Matched[4402]
YMR055C	BUB2	"Mitotic exit network regulator, forms GTPase-activating Bfa1p-Bub2p complex that binds Tem1p and spindle pole bodies, blocks cell cycle progression before anaphase in response to spindle and kinetochore damage"	Verified	chr13:386100-387020	386100-387020	98.5%	73.89	86.02	52.93	47.42	48.52	56.24	79.95	50.18	52.38	0.30	0.20	0.22	0.06	0.01	Matched[4403]
YMR056C	AAC1	"Mitochondrial inner membrane ADP/ATP translocator, exchanges cytosolic ADP for mitochondrially synthesized ATP; phosphorylated; Aac1p is a minor isoform while Pet9p is the major ADP/ATP translocator"	Verified	chr13:387314-388243	387314-388243	98.6%	66.50	103.56	61.05	55.60	176.60	104.65	85.03	58.32	140.63	0.31	0.24	0.58	1.27	1.09	Frag>80[4404,4405]
YMR057C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified ORF AAC1"	Dubious	chr13:388358-388729	388358-388729	94.9%	5.67	2.83	2.83	5.67	22.66	14.16	4.25	4.25	18.41	0.02	0.02	0.08	2.12	-0.42	Matched[4405]
YMR058W	FET3	"Ferro-O2-oxidoreductase required for high-affinity iron uptake and involved in mediating resistance to copper ion toxicity, belongs to class of integral membrane multicopper oxidases"	Verified	chr13:388821-390731	388821-390731	98.7%	1118.20	334.40	966.64	593.55	322.21	253.32	726.30	780.09	287.76	2.68	3.17	1.19	-1.44	-0.60	Frag>80[4405,4406,4407]
YMR059W	SEN15	"Subunit of the tRNA splicing endonuclease, which is composed of Sen2p, Sen15p, Sen34p, and Sen54p"	Verified	chr13:391098-391484	391098-391484	98.7%	94.23	78.53	83.76	83.76	60.20	18.32	86.38	83.76	39.26	0.32	0.34	0.16	-1.09	-0.69	Covered/w/another[4408]
YMR060C	SAM37	Component of the mitochondrial outer membrane sorting and assembly machinery (SAM) complex; required for the sorting of some proteins to the outer membrane after import by the TOM complex	Verified	chr13:391531-392514	391531-392514	99.3%	160.68	170.92	154.54	102.35	163.75	73.69	165.80	128.44	118.72	0.61	0.52	0.49	-0.11	-0.43	Matched[4408]
YMR061W	RNA14	Cleavage and polyadenylation factor I (CF I) component involved in cleavage and polyadenylation of mRNA 3' ends; bridges interaction between Rna15p and Hrp1p in the CF I complex	Verified	chr13:392754-394787	392754-394787	98.9%	189.49	178.05	134.78	122.34	129.31	62.66	183.77	128.56	95.99	0.68	0.52	0.40	-0.42	-1.16	Covered/w/another[4409]
YMR062C	ECM40	"Mitochondrial ornithine acetyltransferase, catalyzes the fifth step in arginine biosynthesis; also possesses acetylglutamate synthase activity, regenerates acetylglutamate while forming ornithine"	Verified	chr13:395053-396378	395053-396378	99.1%	174.18	479.19	123.22	172.66	111.05	81.39	326.69	147.94	96.22	1.21	0.60	0.40	-0.62	-0.43	Covered/w/another[4409]
YMR063W	RIM9	"Protein of unknown function, involved in the proteolytic activation of Rim101p in response to alkaline pH; has similarity to A. nidulans PalI; putative membrane protein"	Verified	chr13:397076-397795	397076-397795	99.0%	36.48	44.90	23.85	37.89	16.84	22.45	40.69	30.87	19.64	0.15	0.13	0.08	-0.65	0.45	Matched[4410]
YMR064W	AEP1	Protein required for expression of the mitochondrial OLI1 gene encoding subunit 9 of F1-F0 ATP synthase	Verified	chr13:397902-399458	397902-399458	99.0%	140.17	151.20	138.23	110.32	125.90	115.51	145.69	124.27	120.70	0.54	0.50	0.50	-0.04	0.40	Matched[4411]
YMR065W	KAR5	"Protein required for nuclear membrane fusion during karyogamy, localizes to the membrane with a soluble portion in the endoplasmic reticulum lumen, may form a complex with Jem1p and Kar2p; expression of the gene is regulated by pheromone"	Verified	chr13:399701-401215	399701-401215	98.9%	63.39	103.42	58.72	43.37	55.38	37.37	83.41	51.04	46.37	0.31	0.21	0.19	-0.14	-0.76	Matched[4412]
YMR066W	SOV1	Mitochondrial protein of unknown function	Verified	chr13:401540-404236	401540-404236	98.9%	53.62	66.37	46.12	50.62	62.24	41.99	59.99	48.37	52.12	0.22	0.20	0.22	0.11	0.19	Matched[4413]
YMR067C	UBX4	UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p	Verified	chr13:404322-405572	404322-405572	99.0%	151.80	151.80	137.27	130.00	235.78	171.99	151.80	133.63	203.88	0.56	0.54	0.84	0.61	0.98	Matched[4414]
YMR068W	AVO2	"Component of a complex containing the Tor2p kinase and other proteins, which may have a role in regulation of cell growth"	Verified	chr13:406303-407583	406303-407583	98.4%	34.92	54.76	42.06	43.65	95.24	72.22	44.84	42.86	83.73	0.17	0.17	0.35	0.97	1.27	Covered/w/another[4415]
YMR069W	NAT4	"N alpha-acetyl-transferase, involved in acetylation of the N-terminal residues of histones H4 and H2A"	Verified	chr13:407708-408565	407708-408565	98.1%	23.77	21.39	10.69	5.94	24.95	32.08	22.58	8.32	28.52	0.08	0.03	0.12	1.78	0.80	Covered/w/another[4415]
YMR070W	MOT3	"Nuclear transcription factor with two Cys2-His2 zinc fingers; involved in repression of a subset of hypoxic genes by Rox1p, repression of several DAN/TIR genes during aerobic growth, and repression of ergosterol biosynthetic genes"	Verified	chr13:409153-410625	409153-410625	97.5%	286.06	240.13	299.29	202.54	333.39	261.01	263.09	250.91	297.20	0.97	1.02	1.23	0.24	0.65	Matched[4416]
YMR071C	TVP18	"Integral membrane protein localized to late Golgi vesicles along with the v-SNARE Tlg2p; may interact with ribosomes, based on co-purification experiments"	Verified	chr13:410761-411264	410761-411264	99.4%	517.18	684.92	581.08	517.18	806.72	533.16	601.05	549.13	669.94	2.22	2.23	2.78	0.29	0.13	Matched[4417]
YMR072W	ABF2	"Mitochondrial DNA-binding protein involved in mitochondrial DNA replication and recombination, member of HMG1 DNA-binding protein family; activity may be regulated by protein kinase A phosphorylation"	Verified	chr13:411568-412119	411568-412119	98.8%	1325.19	1283.03	1325.19	1195.05	1755.92	1024.59	1304.11	1260.12	1390.26	4.81	5.12	5.76	0.14	0.14	Matched[4418]
YMR073C		Putative protein of unknown function; proposed to be involved in resistance to carboplatin and cisplatin; shares similarity to a human cytochrome oxidoreductase; null mutant displays increased levels of spontaneous Rad52 foci	Uncharacterized	chr13:412267-412872	412267-412872	98.9%	193.53	221.90	156.83	175.18	231.91	158.50	207.72	166.01	195.20	0.77	0.67	0.81	0.23	-0.16	Matched[4419]
YMR074C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus and cytoplasm; YMR074C is not an essential gene	Uncharacterized	chr13:413035-413472	413035-413472	99.4%	820.14	953.38	787.98	762.71	1203.79	778.79	886.76	775.34	991.29	3.27	3.15	4.11	0.35	0.00	Matched[4420]
YMR075W	RCO1	Essential subunit of the histone deacetylase Rpd3S complex; interacts with Eaf3p	Verified	chr13:413981-416035	413981-416035	99.0%	123.82	112.51	100.23	105.64	113.01	91.88	118.16	102.93	102.44	0.44	0.42	0.42	-0.01	0.28	Covered/w/another[4421]
YMR075C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified ORF RCO1/YMR075W"	Dubious	chr13:415687-416052	415687-416052	98.7%	215.84	185.40	163.27	143.89	213.08	124.52	200.62	153.58	168.80	0.74	0.62	0.70	0.14	-0.28	Covered/w/another[4421]
YMR076C	PDS5	"Protein required for establishment and maintenance of sister chromatid condensation and cohesion, colocalizes with cohesin on chromosomes in an interdependent manner, may function as a protein-protein interaction scaffold"	Verified	chr13:416195-420028	416195-420028	99.2%	158.31	120.70	129.12	113.87	51.28	49.70	139.51	121.49	50.49	0.51	0.49	0.21	-1.27	-0.47	Frag<80[4422]
YMR077C	VPS20	"Myristoylated subunit of ESCRTIII, the endosomal sorting complex required for transport of transmembrane proteins into the multivesicular body pathway to the lysosomal/vacuolar lumen; cytoplasmic protein recruited to endosomal membranes"	Verified	chr13:421483-422148	421483-422148	99.7%	108.47	100.94	84.36	84.36	191.33	128.05	104.70	84.36	159.69	0.39	0.34	0.66	0.92	0.32	Matched[4424]
YMR078C	CTF18	Subunit of a complex with Ctf8p that shares some subunits with Replication Factor C and is required for sister chromatid cohesion; may have overlapping functions with Rad24p in the DNA damage replication checkpoint	Verified	chr13:422502-424727	422502-424727	99.3%	137.12	110.87	100.47	94.58	55.21	45.71	124.00	97.52	50.46	0.46	0.40	0.21	-0.95	-0.57	Covered/w/another[4425]
YMR079W	SEC14	"Phosphatidylinositol/phosphatidylcholine transfer protein involved in coordinate regulation of PtdIns and PtdCho metabolism, products of which are regulators in Golgi to plasma membrane transport; functionally homologous to mammalian PITPs"	Verified	chr13:424988-426058	424988-424996,425153-426058	98.9%	783.32	701.56	723.66	681.67	365.70	320.40	742.44	702.67	343.05	2.74	2.85	1.42	-1.03	-0.47	Covered/w/another[4425]
YMR080C	NAM7	"ATP-dependent RNA helicase of the SFI superfamily, required for nonsense mediated mRNA decay and for efficient translation termination at nonsense codons; involved in telomere maintenance"	Verified	chr13:426711-429626	426711-429626	99.1%	218.01	214.55	183.06	165.76	103.12	105.55	216.28	174.41	104.33	0.80	0.71	0.43	-0.74	-0.24	Matched[4426]
YMR081C	ISF1	"Serine-rich, hydrophilic protein with similarity to Mbr1p; overexpression suppresses growth defects of hap2, hap3, and hap4 mutants; expression is under glucose control; cotranscribed with NAM7 in a cyp1 mutant"	Verified	chr13:430078-431094	430078-431094	98.6%	37.90	91.76	69.81	76.80	139.63	101.73	64.83	73.30	120.68	0.24	0.30	0.50	0.72	0.92	Matched[4427]
YMR082C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr13:431768-432124	431768-432124	98.7%	11.35	2.84	2.84	0.00	2.84	14.19	7.10	1.42	8.51	0.03	0.01	0.04	2.58	0.58	Frag<80[4428]
YMR083W	ADH3	Mitochondrial alcohol dehydrogenase isozyme III; involved in the shuttling of mitochondrial NADH to the cytosol under anaerobic conditions and ethanol production	Verified	chr13:434787-435914	434787-435914	98.3%	2103.89	2065.13	2016.45	1883.94	1662.20	1418.82	2084.51	1950.20	1540.51	7.69	7.92	6.38	-0.34	-0.06	Matched[4430]
YMR084W		Putative protein of unknown function; YMR084W and adjacent ORF YMR085W are merged in related strains	Uncharacterized	chr13:436627-437415	436627-437415	98.8%	12.83	20.53	10.27	19.25	43.64	50.05	16.68	14.76	46.84	0.06	0.06	0.19	1.67	2.58	Covered/w/another[4432]
YMR085W		Putative protein of unknown function; YMR085W and adjacent ORF YMR084W are merged in related strains	Uncharacterized	chr13:437490-438788	437490-438788	98.7%	27.30	27.30	23.40	20.28	91.26	85.80	27.30	21.84	88.53	0.10	0.09	0.37	2.02	2.01	Covered/w/another[4432]
YMR086W		"Protein of unknown function that may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery; cAMP represses YMR086W expression"	Verified	chr13:439207-442089	439207-442089	98.6%	142.87	174.89	140.40	149.91	158.35	178.06	158.88	145.15	168.20	0.59	0.59	0.70	0.21	0.63	Matched[4433]
YMR086C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr13:442025-442363	442025-442363	99.2%	127.93	190.41	172.55	113.05	187.43	142.80	159.17	142.80	165.12	0.59	0.58	0.68	0.21	0.48	
YMR087W		Putative ADP-ribose-1''-monophosphatase that converts ADP-ribose-1''-monophosphate to ADP-ribose; may have a role in tRNA splicing; contains an A1pp domain	Verified	chr13:442526-443380	442526-443380	98.8%	103.00	99.45	78.14	58.01	113.65	58.01	101.22	68.07	85.83	0.37	0.28	0.36	0.33	0.63	Matched[4434]
YMR088C	VBA1	Permease of basic amino acids in the vacuolar membrane	Verified	chr13:443413-445101	443413-445101	99.0%	193.83	199.81	185.45	145.37	121.44	92.13	196.82	165.41	106.78	0.73	0.67	0.44	-0.63	-0.25	Matched[4435]
YMR089C	YTA12	"Component, with Afg3p, of the mitochondrial inner membrane m-AAA protease that mediates degradation of misfolded or unassembled proteins and is also required for correct assembly of mitochondrial enzyme complexes"	Verified	chr13:445608-448085	445608-448085	99.2%	308.78	271.76	299.83	288.44	255.89	262.40	290.27	294.14	259.15	1.07	1.19	1.07	-0.18	0.07	Matched[4436]
YMR090W		"Putative protein of unknown function with similarity to DTDP-glucose 4,6-dehydratases; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YMR090W is not an essential gene"	Uncharacterized	chr13:449244-449927	449244-449927	98.5%	234.46	690.04	293.82	316.08	1621.96	1074.38	462.25	304.95	1348.17	1.71	1.24	5.59	2.14	1.67	Matched[4438]
YMR091C	NPL6	"Component of the RSC chromatin remodeling complex; interacts with Rsc3p, Rsc30p, Ldb7p, and Htl1p to form a module important for a broad range of RSC functions; involved in nuclear protein import and maintenance of proper telomere length"	Verified	chr13:450057-451364	450057-451364	99.3%	320.42	301.16	305.79	273.44	274.21	157.90	310.79	289.61	216.05	1.15	1.18	0.90	-0.42	-0.40	Matched[4439]
YMR092C	AIP1	"Actin cortical patch component, interacts with the actin depolymerizing factor cofilin; required to restrict cofilin localization to cortical patches; contains WD repeats"	Verified	chr13:451631-453478	451631-453478	99.0%	377.58	369.93	403.26	388.51	757.89	678.11	373.75	395.88	718.00	1.38	1.61	2.97	0.86	1.21	Frag>80[4440,4441]
YMR093W	UTP15	"Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA"	Verified	chr13:454014-455555	454014-455555	98.9%	232.76	148.18	160.63	114.74	22.29	5.90	190.47	137.69	14.10	0.70	0.56	0.06	-3.29	-1.67	Matched[4442]
YMR094W	CTF13	"Subunit of the CBF3 complex, which binds to the CDE III element of centromeres, bending the DNA upon binding, and may be involved in sister chromatid cohesion during mitosis"	Verified	chr13:455824-457260	455824-457260	98.8%	34.50	31.69	23.24	15.49	20.42	18.31	33.09	19.36	19.36	0.12	0.08	0.08	0.00	-0.40	Overlap[4442,4443]
YMR095C	SNO1	"Protein of unconfirmed function, involved in pyridoxine metabolism; expression is induced during stationary phase; forms a putative glutamine amidotransferase complex with Snz1p, with Sno1p serving as the glutaminase"	Verified	chr13:457284-457958	457284-457958	99.0%	94.25	97.24	40.39	40.39	40.39	37.40	95.75	40.39	38.90	0.35	0.16	0.16	-0.05	-0.21	Covered/w/another[4443]
YMR096W	SNZ1	"Protein involved in vitamin B6 biosynthesis; member of a stationary phase-induced gene family; coregulated with SNO1; interacts with Sno1p and with Yhr198p, perhaps as a multiprotein complex containing other Snz and Sno proteins"	Verified	chr13:458407-459300	458407-459300	98.4%	156.92	255.85	130.77	90.97	63.68	39.80	206.39	110.87	51.74	0.76	0.45	0.21	-1.10	-0.53	Covered/w/another[4443]
YMR097C	MTG1	"Peripheral GTPase of the mitochondrial inner membrane, essential for respiratory competence, likely functions in assembly of the large ribosomal subunit, has homologs in plants and animals"	Verified	chr13:459423-460526	459423-460526	99.4%	102.08	124.87	113.93	104.82	167.70	97.52	113.47	109.37	132.61	0.42	0.44	0.55	0.28	0.44	Covered/w/another[4443]
YMR098C		"Protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YMR098C is not an essential gene"	Uncharacterized	chr13:460770-462608	460770-462608	99.3%	98.04	110.64	106.26	105.71	152.82	108.45	104.34	105.99	130.63	0.39	0.43	0.54	0.30	0.56	Matched[4444]
YMR099C		"Glucose-6-phosphate 1-epimerase (hexose-6-phosphate mutarotase), likely involved in carbohydrate metabolism; GFP-fusion protein localizes to both the nucleus and cytoplasm and is induced in response to the DNA-damaging agent MMS"	Verified	chr13:463933-464826	463933-464826	99.1%	775.54	829.73	754.09	742.80	1183.07	941.49	802.63	748.45	1062.28	2.96	3.04	4.40	0.51	0.65	Frag>80[4445,4446,4447]
YMR100W	MUB1	"Protein of unknown function, deletion causes multi-budding phenotype; has similarity to Aspergillus nidulans samB gene"	Verified	chr13:466299-468161	466299-468161	98.8%	114.08	115.71	114.08	82.57	129.29	93.98	114.90	98.33	111.64	0.42	0.40	0.46	0.18	0.12	Matched[4448]
YMR101C	SRT1	Cis-prenyltransferase involved in synthesis of long-chain dolichols (19-22 isoprene units; as opposed to Rer2p which synthesizes shorter-chain dolichols); localizes to lipid bodies; transcription is induced during stationary phase	Verified	chr13:468444-469475	468444-469475	99.2%	11.72	19.53	5.86	4.88	22.46	25.39	15.62	5.37	23.92	0.06	0.02	0.10	2.16	1.03	Frag<80[4449]
YMR102C		Protein of unknown function; transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in multidrug resistance; mutant shows increased resistance to azoles; YMR102C is not an essential gene	Uncharacterized	chr13:469847-472351	469847-472351	99.1%	113.22	108.38	102.34	80.18	143.84	154.32	110.80	91.26	149.08	0.41	0.37	0.62	0.71	1.28	Covered/w/another[4450]
YMR103C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr13:472901-473263	472901-473263	98.3%	128.87	123.26	162.48	154.08	619.12	341.78	126.07	158.28	480.45	0.47	0.64	1.99	1.60	1.28	Covered/w/another[4450]
YMR104C	YPK2	Protein kinase with similarityto serine/threonine protein kinase Ypk1p; functionally redundant with YPK1 at the genetic level; participates in a signaling pathway required for optimal cell wall integrity; homolog of mammalian kinase SGK	Verified	chr13:473419-475452	473419-475452	99.0%	51.16	61.09	75.99	82.45	170.36	153.47	56.12	79.22	161.91	0.21	0.32	0.67	1.03	1.50	Covered/w/another[4450]
YMR105C	PGM2	"Phosphoglucomutase, catalyzes the conversion from glucose-1-phosphate to glucose-6-phosphate, which is a key step in hexose metabolism; functions as the acceptor for a Glc-phosphotransferase"	Verified	chr13:475896-477605	475896-477605	98.5%	306.95	1268.16	991.49	1157.73	8849.20	6213.14	787.55	1074.61	7531.17	2.91	4.36	31.20	2.81	2.34	Frag>80[4451,4452]
YMR105W-A		Putative protein of unknown function	Uncharacterized	chr13:478063-478257	478063-478257	98.7%	36.37	46.76	57.16	41.57	31.18	5.20	41.57	49.36	18.19	0.15	0.20	0.08	-1.44	NaN	Covered/w/another[4453]
YMR106C	YKU80	"Subunit of the telomeric Ku complex (Yku70p-Yku80p), involved in telomere length maintenance, structure and telomere position effect; relocates to sites of double-strand cleavage to promote nonhomologous end joining during DSB repair"	Verified	chr13:478300-480189	478300-480189	99.1%	53.93	43.79	48.59	43.25	42.72	37.38	48.86	45.92	40.05	0.18	0.19	0.17	-0.20	0.07	Matched[4453]
YMR107W	SPG4	Protein required for survival at high temperature during stationary phase; not required for growth on nonfermentable carbon sources	Verified	chr13:483013-483360	483013-483360	98.2%	0.00	11.71	8.78	5.86	313.25	143.45	5.86	7.32	228.35	0.02	0.03	0.95	4.96	4.17	Matched[4457]
YMR108W	ILV2	"Acetolactate synthase, catalyses the first common step in isoleucine and valine biosynthesis and is the target of several classes of inhibitors, localizes to the mitochondria; expression of the gene is under general amino acid control"	Verified	chr13:484083-486146	484083-486146	98.7%	629.95	647.14	533.72	437.97	203.76	145.34	638.54	485.84	174.55	2.36	1.97	0.72	-1.48	-0.99	Matched[4458]
YMR109W	MYO5	"One of two type I myosins; contains proline-rich tail homology 2 (TH2) and SH3 domains; MYO5 deletion has little effect on growth, but myo3 myo5 double deletion causes severe defects in growth and actin cytoskeleton organization"	Verified	chr13:486586-490245	486586-490245	98.4%	224.80	241.73	224.25	237.29	189.00	214.53	233.27	230.77	201.77	0.86	0.94	0.84	-0.19	0.42	Matched[4459]
YMR110C	HFD1	"Putative fatty aldehyde dehydrogenase, located in the mitochondrial outer membrane and also in lipid particles; has similarity to human fatty aldehyde dehydrogenase (FALDH) which is implicated in Sjogren-Larsson syndrome"	Verified	chr13:490393-491991	490393-491991	99.1%	209.45	276.96	315.44	331.21	959.57	683.88	243.20	323.33	821.72	0.90	1.31	3.40	1.35	1.29	Frag>80[4460,4461,4462]
YMR111C		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; YMR111C is not an essential gene	Uncharacterized	chr13:492403-493791	492403-493791	99.1%	47.23	61.03	45.78	45.78	105.36	66.12	54.13	45.78	85.74	0.20	0.19	0.36	0.91	1.24	Frag>80[4462,4463,4464]
YMR112C	MED11	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential protein	Verified	chr13:494099-494494	494099-494494	99.2%	190.86	129.78	152.69	157.78	236.67	173.05	160.32	155.23	204.86	0.59	0.63	0.85	0.40	0.36	Matched[4464]
YMR113W	FOL3	"Dihydrofolate synthetase, involved in folic acid biosynthesis; catalyzes the conversion of dihydropteroate to dihydrofolate in folate coenzyme biosynthesis"	Verified	chr13:494998-496281	494998-496281	98.7%	128.59	113.60	106.50	89.93	112.81	85.99	121.10	98.22	99.40	0.45	0.40	0.41	0.02	0.16	Matched[4465]
YMR114C		"Protein of unknown function; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the nucleus and cytoplasm; YMR114C is not an essential gene"	Verified	chr13:496342-497448	496342-497448	99.2%	99.25	100.16	88.32	80.13	249.49	158.43	99.70	84.22	203.96	0.37	0.34	0.85	1.28	0.82	Matched[4466]
YMR115W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr13:497703-499208	497703-499208	98.6%	115.20	100.38	114.53	107.12	206.82	148.21	107.79	110.82	177.52	0.40	0.45	0.74	0.68	-0.04	Matched[4467]
YMR116C	ASC1	G-beta protein for Gpa2p; involved in translation regulation; required for repression of Gcn4p activity in the absence of amino-acid starvation; core component of the ribosome; ortholog of mammalian RACK1	Verified	chr13:499455-500687	499455-499877,500151-500687	98.6%	12581.09	9254.09	10582.14	9029.05	3273.11	3325.94	10917.59	9805.60	3299.52	40.30	39.80	13.67	-1.57	-1.96	Frag>80[4468,4469,4470]
YMR117C	SPC24	"Component of the evolutionarily conserved kinetochore-associated Ndc80 complex (Ndc80p-Nuf2p-Spc24p-Spc25p); involved in chromosome segregation, spindle checkpoint activity and kinetochore clustering"	Verified	chr13:501249-501890	501249-501890	99.5%	53.21	51.65	43.82	57.91	43.82	39.13	52.43	50.86	41.47	0.19	0.21	0.17	-0.29	0.09	Matched[4471]
YMR118C		Protein of unknown function with similarity to succinate dehydrogenase cytochrome b subunit; YMR118C is not an essential gene	Uncharacterized	chr13:502143-502733	502143-502733	98.8%	61.64	49.65	32.53	25.68	106.15	46.23	55.64	29.11	76.19	0.21	0.12	0.32	1.39	2.09	Matched[4472]
YMR119W	ASI1	Putative integral membrane E3 ubiquitin ligase; acts with Asi2p and Asi3p to ensure the fidelity of SPS-sensor signalling by maintaining the dormant repressed state of gene expression in the absence of inducing signals	Verified	chr13:505332-507206	505332-507206	99.1%	154.43	193.71	171.11	163.58	235.15	196.40	174.07	167.35	215.78	0.64	0.68	0.89	0.37	0.69	Matched[4473]
YMR119W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr13:506995-507369	506995-507369	99.3%	389.57	376.13	343.89	284.79	354.64	228.37	382.85	314.34	291.50	1.41	1.28	1.21	-0.11	0.41	Covered/w/another[4473]
YMR120C	ADE17	"Enzyme of 'de novo' purine biosynthesis containing both 5-aminoimidazole-4-carboxamide ribonucleotide transformylase and inosine monophosphate cyclohydrolase activities, isozyme of Ade16p; ade16 ade17 mutants require adenine and histidine"	Verified	chr13:507501-509279	507501-509279	98.9%	4086.92	2784.26	4086.35	3210.91	405.06	121.57	3435.59	3648.63	263.31	12.68	14.81	1.09	-3.79	-3.93	Frag>80[4474,4475,4476]
YMR121C	RPL15B	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl15Ap and has similarity to rat L15 ribosomal protein; binds to 5.8 S rRNA"	Verified	chr13:509733-510347	509733-510347	60.8%	307.73	339.84	412.09	283.64	449.55	238.15	323.78	347.86	343.85	1.20	1.41	1.42	-0.02	-0.19	Frag>80[4476,4477]
YMR122C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr13:510700-511074	510700-511074	98.5%	32.47	35.18	32.47	32.47	27.06	32.47	33.83	32.47	29.77	0.12	0.13	0.12	-0.13	-0.66	Matched[4478]
YMR122W-A		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and endoplasmic reticulum	Uncharacterized	chr13:511314-511568	511314-511568	99.2%	3594.66	4286.70	3780.52	2807.71	5587.74	3725.16	3940.68	3294.12	4656.45	14.55	13.37	19.29	0.50	-0.35	Matched[4479]
YMR123W	PKR1	"V-ATPase assembly factor, functions with other V-ATPase assembly factors in the ER to efficiently assemble the V-ATPase membrane sector (V<sub>0</sub>); overproduction confers resistance to Pichia farinosa killer toxin"	Verified	chr13:513592-513960	513592-513960	98.6%	390.38	324.40	357.39	299.66	203.44	148.45	357.39	328.52	175.95	1.32	1.33	0.73	-0.90	-0.75	Matched[4481]
YMR124W		"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck; interacts with Crm1p in two-hybrid assay; YMR124W is not an essential gene"	Uncharacterized	chr13:514455-517286	514455-517286	98.7%	145.20	133.04	127.67	129.82	153.42	182.75	139.12	128.75	168.08	0.51	0.52	0.70	0.38	0.74	Covered/w/another[4482]
YMR125W	STO1	"Large subunit of the nuclear mRNA cap-binding protein complex, interacts with Npl3p to carry nuclear poly(A)+ mRNA to cytoplasm; also involved in nuclear mRNA degradation and telomere maintenance; orthologous to mammalian CBP80"	Verified	chr13:517538-520445	517538-517562,517885-520445	99.0%	335.78	242.85	295.17	277.99	161.64	146.02	289.32	286.58	153.83	1.07	1.16	0.64	-0.90	-0.36	Covered/w/another[4482]
YMR126C	DLT1	"Protein of unknown function, mutant sensitive to 6-azauracil (6AU) and mycophenolic acid (MPA)"	Uncharacterized	chr13:520760-521788	520760-521788	99.1%	108.81	130.38	82.35	90.19	94.11	64.70	119.60	86.27	79.41	0.44	0.35	0.33	-0.12	-0.35	Matched[4483]
YMR127C	SAS2	"Histone acetyltransferase (HAT) catalytic subunit of the SAS complex (Sas2p-Sas4p-Sas5p), which acetylates free histones and nucleosomes and regulates transcriptional silencing; member of the MYSTacetyltransferase family"	Verified	chr13:522328-523344	522328-523344	99.0%	114.19	104.26	80.43	73.48	46.67	18.87	109.23	76.95	32.77	0.40	0.31	0.14	-1.23	-2.39	Matched[4484]
YMR128W	ECM16	"Essential DEAH-box ATP-dependent RNA helicase specific to the U3 snoRNP, predominantly nucleolar in distribution, required for 18S rRNA synthesis"	Verified	chr13:523695-527498	523695-527498	98.5%	179.14	83.83	107.33	81.43	11.75	10.68	131.49	94.38	11.21	0.49	0.38	0.05	-3.07	-1.53	Matched[4485]
YMR129W	POM152	Nuclear pore membrane glycoprotein; may be involved in duplication of nuclear pores and nuclear pore complexes during S-phase;	Verified	chr13:527803-531816	527803-531816	99.0%	139.41	116.26	107.70	96.88	50.08	39.00	127.83	102.29	44.54	0.47	0.42	0.18	-1.20	-0.45	Covered/w/another[4486]
YMR130W		Putative protein of unknown function; YMR130W is not an essential gene	Uncharacterized	chr13:532118-533026	532118-533026	99.0%	221.22	200.10	205.66	184.54	211.22	105.61	210.66	195.10	158.41	0.78	0.79	0.66	-0.30	-0.44	Covered/w/another[4486]
YMR131C	RRB1	Essential nuclear protein involved in early steps of ribosome biogenesis; physically interacts with the ribosomal protein Rpl3p	Verified	chr13:533162-534697	533162-534697	99.1%	480.99	260.86	330.51	243.12	28.91	6.57	370.92	286.82	17.74	1.37	1.16	0.07	-4.01	-3.33	Covered/w/another[4486]
YMR132C	JLP2	"Protein of unknown function, contains sequence that closely resembles a J domain (typified by the E. coli DnaJ protein)"	Uncharacterized	chr13:534943-535569	534943-535569	99.6%	65.67	43.24	43.24	49.65	56.06	24.02	54.45	46.45	40.04	0.20	0.19	0.17	-0.21	-0.25	Covered/w/another[4486]
YMR133W	REC114	Protein involved in early stages of meiotic recombination; possibly involved in the coordination of recombination and meiotic division; mutations lead to premature initiation of the first meiotic division	Verified	chr13:536206-537608	536206-537447,537564-537608	98.8%	29.87	38.52	38.52	35.37	182.37	138.35	34.19	36.94	160.36	0.13	0.15	0.66	2.12	2.29	Covered/w/another[4487]
YMR134W		Protein that binds to and regulates Erg25p; localized to the ER; null mutant is viable in a respiratory defective background; synthetic lethal with mmt1 and mmt2 mutations; highly conserved in ascomycetes	Uncharacterized	chr13:537837-538550	537837-538550	98.6%	168.95	177.47	157.60	122.10	235.68	166.11	173.21	139.85	200.90	0.64	0.57	0.83	0.52	0.28	Covered/w/another[4487]
YMR135W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr13:539910-540443	539910-540443	98.5%	24.71	55.13	34.22	38.02	87.45	39.92	39.92	36.12	63.68	0.15	0.15	0.26	0.82	0.62	Overlap[4487]
YMR135C	GID8	"Protein of unknown function, involved in proteasome-dependent catabolite inactivation of fructose-1,6-bisphosphatase; contains LisH and CTLH domains, like Vid30p; dosage-dependent regulator of START"	Verified	chr13:538688-540055	538688-540055	99.0%	179.40	211.15	210.41	172.76	364.71	249.54	195.28	191.58	307.12	0.72	0.78	1.27	0.68	0.67	Covered/w/another[4487]
YMR136W	GAT2	Protein containing GATA family zinc finger motifs; similar to Gln3p and Dal80p; expression repressed by leucine	Verified	chr13:541198-542880	541198-542880	99.2%	121.63	210.31	122.23	136.01	289.40	284.01	165.97	129.12	286.71	0.61	0.52	1.19	1.15	1.33	Matched[4488]
YMR137C	PSO2	Required for a post-incision step in the repair of DNA single and double-strand breaks that result from interstrand crosslinks produced by a variety of mono- and bi-functional psoralen derivatives; induced by UV-irradiation	Verified	chr13:542977-544962	542977-544962	99.3%	50.19	57.28	41.06	39.54	81.11	59.82	53.73	40.30	70.46	0.20	0.16	0.29	0.81	1.12	Matched[4489]
YMR138W	CIN4	GTP-binding protein involved in beta-tubulin (Tub2p) folding; isolated as mutant with increased chromosome loss and sensitivity to benomyl	Verified	chr13:545154-545729	545154-545729	98.4%	47.65	61.77	67.06	56.47	30.00	22.94	54.71	61.77	26.47	0.20	0.25	0.11	-1.22	-1.59	Matched[4490]
YMR139W	RIM11	Protein kinase required for signal transduction during entry into meiosis; promotes the formation of the Ime1p-Ume6p complex by phosphorylating Ime1p and Ume6p; shares similarity with mammalian glycogen synthase kinase 3-beta	Verified	chr13:546124-547236	546124-547236	99.0%	171.56	245.09	254.17	271.42	624.53	474.75	208.33	262.79	549.64	0.77	1.07	2.28	1.06	1.36	Matched[4491]
YMR140W	SIP5	Protein of unknown function; interacts with both the Reg1p/Glc7p phosphatase and the Snf1p kinase	Verified	chr13:547713-549182	547713-549182	98.6%	111.80	105.59	93.17	109.73	203.59	207.05	108.70	101.45	205.32	0.40	0.41	0.85	1.02	1.62	Matched[4492]
YMR141C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr13:549735-550043	549735-550043	99.1%	124.12	130.65	143.71	117.58	336.42	182.91	127.38	130.65	259.66	0.47	0.53	1.08	0.99	0.01	Covered/w/another[4492]
YMR141W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene RPL13B/YMR142C"	Dubious	chr13:550910-551134	550910-551134	99.5%	40.21	22.34	40.21	8.94	0.00	0.00	31.27	24.57	0.00	0.12	0.10	0.00	-Inf	NaN	Covered/w/another[4493]
YMR142C	RPL13B	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl13Ap; not essential for viability; has similarity to rat L13 ribosomal protein"	Verified	chr13:550205-551206	550205-550800,551203-551206	66.3%	9485.92	7736.99	8134.02	6960.53	1862.00	1625.80	8611.45	7547.27	1743.90	31.79	30.64	7.23	-2.11	-2.47	Matched[4493]
YMR143W	RPS16A	Protein component of the small (40S) ribosomal subunit; identical to Rps16Bp and has similarity to E. coli S9 and rat S16 ribosomal proteins	Verified	chr13:551927-552902	551927-551950,552495-552902	74.0%	7112.39	5597.91	5929.60	5091.00	2027.64	1395.57	6355.15	5510.30	1711.60	23.46	22.37	7.09	-1.69	-2.84	Matched[4494]
YMR144W		Putative protein of unknown function; localized to the nucleus; YMR144W is not an essential gene	Uncharacterized	chr13:553361-554389	553361-554389	98.7%	68.95	72.89	71.91	80.77	71.91	37.43	70.92	76.34	54.67	0.26	0.31	0.23	-0.48	-0.54	Matched[4495]
YMR145C	NDE1	"Mitochondrial external NADH dehydrogenase, a type II NAD(P)H:quinone oxidoreductase that catalyzes the oxidation of cytosolic NADH; Nde1p and Nde2p provide cytosolic NADH to the mitochondrial respiratory chain"	Verified	chr13:554792-556474	554792-556474	99.0%	449.64	152.48	505.47	554.09	610.52	368.59	301.06	529.78	489.56	1.11	2.15	2.03	-0.11	0.07	Matched[4496]
YMR146C	TIF34	"Subunit of the core complex of translation initiation factor 3(eIF3), which is essential for translation"	Verified	chr13:557480-558523	557480-558523	98.9%	1318.81	860.81	1146.45	918.91	305.98	291.45	1089.81	1032.68	298.72	4.02	4.19	1.24	-1.79	-1.35	Matched[4498]
YMR147W		Putative protein of unknown function	Uncharacterized	chr13:559198-559869	559198-559869	98.8%	63.27	81.35	43.69	49.71	40.68	43.69	72.31	46.70	42.18	0.27	0.19	0.17	-0.15	0.18	Matched[4499]
YMR148W		Putative protein of unknown function; predicted to contain a transmembrane domain; YMR148W is not an essential gene	Uncharacterized	chr13:560365-560811	560365-560811	99.1%	212.17	248.28	259.57	239.26	374.68	277.63	230.23	249.41	326.15	0.85	1.01	1.35	0.39	0.39	Frag<80[4500]
YMR149W	SWP1	"Delta subunit of the oligosaccharyl transferase glycoprotein complex, which is required for N-linked glycosylation of proteins in the endoplasmic reticulum"	Verified	chr13:560995-561855	560995-561855	99.0%	784.60	825.65	816.26	767.01	659.11	548.87	805.12	791.63	603.99	2.97	3.21	2.50	-0.39	-0.34	Matched[4501]
YMR151W	YIM2	"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; 5% of ORF overlaps the verified gene IMP1"	Dubious	chr13:562505-562942	562505-562942	99.1%	43.75	46.06	36.85	29.94	71.39	36.85	44.91	33.39	54.12	0.17	0.14	0.22	0.70	-0.43	Matched[4503]
YMR150C	IMP1	"Catalytic subunit of the mitochondrial inner membrane peptidase complex, required for maturation of mitochondrial proteins of the intermembrane space; complex contains Imp1p and Imp2p (both catalytic subunits), and Som1p"	Verified	chr13:561955-562527	561955-562527	99.2%	219.88	270.89	265.61	255.06	420.40	293.76	245.38	260.33	357.08	0.91	1.06	1.48	0.46	-0.22	Matched[4502]
YMR152W	YIM1	"Protein of unknown function; null mutant displays sensitivity to DNA damaging agents; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr13:563095-564192	563095-564192	98.9%	231.17	284.58	303.00	310.37	717.45	596.80	257.88	306.69	657.12	0.95	1.24	2.72	1.10	1.27	Matched[4504]
YMR153W	NUP53	"Subunit of the nuclear pore complex (NPC), interacts with karyopherin Kap121p or with Nup170p via overlapping regions of Nup53p, involved in activation of the spindle checkpoint mediated by the Mad1p-Mad2p complex"	Verified	chr13:564434-565861	564434-565861	98.7%	145.51	168.22	127.76	119.24	142.67	109.31	156.86	123.50	125.99	0.58	0.50	0.52	0.03	-0.18	Matched[4505]
YMR153C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene NUP53"	Dubious	chr13:565573-565908	565573-565908	98.4%	190.48	241.87	178.38	139.08	229.78	151.17	216.18	158.73	190.48	0.80	0.64	0.79	0.26	1.50	Covered/w/another[4505]
YMR154C	RIM13	Calpain-like cysteine protease involved in proteolytic activation of Rim101p in response to alkaline pH; has similarity to A. nidulans palB	Verified	chr13:565998-568181	565998-568181	99.1%	33.27	39.74	23.57	25.42	43.90	50.83	36.51	24.49	47.37	0.13	0.10	0.20	0.95	0.82	Matched[4506]
YMR155W		Putative protein of unknown function; identified as interacting with Hsp82p in a high-throughput two-hybrid screen	Uncharacterized	chr13:568550-570193	568550-570193	98.9%	76.85	109.43	97.75	89.15	107.59	68.86	93.14	93.45	88.22	0.34	0.38	0.37	-0.08	0.09	Matched[4507]
YMR156C	TPP1	"DNA 3'-phosphatase that functions in repair of endogenous damage of double-stranded DNA, activity is specific for removal of 3' phosphates at strand breaks; has similarity to the l-2-haloacid dehalogenase superfamily"	Verified	chr13:570299-571015	570299-571015	99.2%	57.67	53.45	67.51	54.86	118.15	53.45	55.56	61.19	85.80	0.21	0.25	0.36	0.49	0.65	Matched[4508]
YMR157C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr13:571276-572043	571276-572043	99.2%	185.14	177.26	182.51	151.00	246.85	143.12	181.20	166.76	194.99	0.67	0.68	0.81	0.23	0.07	Matched[4509]
YMR158W	MRPS8	Mitochondrial ribosomal protein of the small subunit	Verified	chr13:572247-572714	572247-572714	98.9%	315.45	272.24	267.92	300.32	516.38	300.32	293.84	284.12	408.35	1.08	1.15	1.69	0.52	-0.01	Matched[4510]
YMR158C-A		"Putative protein of unknown function, may contain a lipid attachment site; YMR158C-A is not an essential gene"	Uncharacterized	chr13:573193-573330	573193-573330	60.8%	119.23	71.54	35.77	47.69	309.99	83.46	95.38	41.73	196.72	0.35	0.17	0.82	2.24	NaN	Covered/w/another[4511]
YMR158W-B		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene ATG16/YMR159C"	Dubious	chr13:574470-574790	574470-574790	99.5%	37.56	65.73	50.08	25.04	115.81	65.73	51.64	37.56	90.77	0.19	0.15	0.38	1.27	NaN	Covered/w/another[4511]
YMR159C	ATG16	Protein that interacts with the Atg12p-Atg5p conjugate during formation of the pre-autophagosomal structure; essential for autophagy	Verified	chr13:574475-574927	574475-574927	99.5%	28.83	46.58	44.36	17.74	106.46	59.88	37.70	31.05	83.17	0.14	0.13	0.34	1.42	1.07	Covered/w/another[4511]
YMR160W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the membrane of the vacuole; mutant has enhanced sensitivity to overexpression of mutant huntingtin; YMR160W is not an essential gene	Uncharacterized	chr13:575065-577515	575065-577515	99.0%	54.83	77.10	64.32	66.79	122.04	98.95	65.97	65.55	110.49	0.24	0.27	0.46	0.75	1.11	Matched[4512]
YMR161W	HLJ1	"Co-chaperone for Hsp40p, anchored in the ER membrane; with its homolog Hdj1p promotes ER-associated protein degradation (ERAD) of integral membrane substrates; similar to E. coli DnaJ"	Verified	chr13:577717-578391	577717-578391	98.5%	240.62	233.10	257.16	213.55	551.91	391.00	236.86	235.35	471.46	0.87	0.96	1.95	1.00	0.73	Matched[4513]
YMR162C	DNF3	Aminophospholipid translocase (flippase) that maintains membrane lipid asymmetry in post-Golgi secretory vessicles; localizes to the trans-Golgi network; likely involved in protein transport; type 4 P-type ATPase	Verified	chr13:578950-583920	578950-583920	99.2%	71.79	80.11	73.01	64.90	53.95	58.00	75.95	68.95	55.97	0.28	0.28	0.23	-0.30	0.22	Matched[4514]
YMR163C	INP2	Peroxisome-specific receptor important for peroxisome inheritance; co-fractionates with peroxisome membranes and co-localizes with peroxisomes in vivo; physically interacts with the myosin V motor Myo2p; INP2 is not an essential gene	Verified	chr13:584270-586387	584270-586387	99.2%	71.90	63.81	70.47	63.81	65.24	47.14	67.85	67.14	56.19	0.25	0.27	0.23	-0.26	0.09	Matched[4515]
YMR164C	MSS11	Transcription factor involved in regulation of invasive growth and starch degradation; controls the activation of MUC1 and STA2 in response to nutritional signals	Verified	chr13:587273-589549	587273-589549	92.5%	93.03	86.86	104.42	92.08	102.52	93.03	89.94	98.25	97.77	0.33	0.40	0.41	-0.01	0.64	Frag>80[4516,4517]
YMR165C	PAH1	"Mg<sup>2+</sup>-dependent phosphatidate (PA) phosphatase, catalyzes the dephosphorylation of PA to yield diacylglycerol and P<sub>i</sub>, responsible for de novo lipid synthesis; homologous to mammalian lipin 1"	Verified	chr13:590039-592627	590039-592627	99.1%	61.57	91.57	62.74	60.40	151.58	136.38	76.57	61.57	143.98	0.28	0.25	0.60	1.23	1.62	Matched[4518]
YMR166C		Predicted transporter of the mitochondrial inner membrane; has similarity to human mitochondrial ATP-Mg/Pi carriers; YMR166C is not an essential gene	Uncharacterized	chr13:593366-594472	593366-594472	98.8%	68.58	64.01	68.58	63.10	109.74	105.16	66.30	65.84	107.45	0.24	0.27	0.45	0.71	1.14	Matched[4519]
YMR167W	MLH1	Protein required for mismatch repair in mitosis and meiosis as well as crossing over during meiosis; forms a complex with Pms1p and Msh2p-Msh3p during mismatch repair; human homolog is associated with hereditary non-polyposis colon cancer	Verified	chr13:594885-597194	594885-597194	98.7%	56.15	53.95	45.62	35.09	59.66	42.55	55.05	40.36	51.10	0.20	0.16	0.21	0.34	0.30	Frag>80[4520]
YMR168C	CEP3	"Essential kinetochore protein, component of the CBF3 complex that binds the CDEIII region of the centromere; contains an N-terminal Zn2Cys6 type zinc finger domain, a C-terminal acidic domain, and a putative coiled coil dimerization domain"	Verified	chr13:597331-599157	597331-599157	99.2%	86.65	86.65	56.30	51.88	52.98	45.81	86.65	54.09	49.40	0.32	0.22	0.20	-0.13	0.40	Matched[4521]
YMR169C	ALD3	"Cytoplasmic aldehyde dehydrogenase, involved in beta-alanine synthesis; uses NAD+ as the preferred coenzyme; very similar to Ald2p; expression is induced by stress and repressed by glucose"	Verified	chr13:599351-600871	599351-600871	38.7%	25.45	57.69	39.03	35.63	4649.32	4031.67	41.57	37.33	4340.50	0.15	0.15	17.98	6.86	4.29	Frag<80[4522,4523,4524]
YMR170C	ALD2	"Cytoplasmic aldehyde dehydrogenase, involved in ethanol oxidation and beta-alanine biosynthesis; uses NAD+ as the preferred coenzyme; expression is stress induced and glucose repressed; very similar to Ald3p"	Verified	chr13:601561-603081	601561-603081	38.9%	81.10	77.72	81.10	74.34	386.91	277.09	79.41	77.72	332.00	0.29	0.32	1.38	2.09	2.02	Frag<80[4524,4525,4526,4527]
YMR171C		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to endosomes; mRNA is targeted to the bud via the mRNA transport system involving She2p: YMR171C is not an essential gene	Uncharacterized	chr13:603867-605519	603867-605519	99.1%	150.83	171.59	164.27	134.34	192.36	131.90	161.21	149.31	162.13	0.60	0.61	0.67	0.12	0.49	Matched[4528]
YMR172W	HOT1	Transcription factor required for the transient induction of glycerol biosynthetic genes GPD1 and GPP2 in response to high osmolarity; targets Hog1p to osmostress responsive promoters; has similarity to Msn1p and Gcr1p	Verified	chr13:605980-608139	605980-608139	98.6%	92.97	92.50	79.82	74.19	51.65	41.32	92.74	77.01	46.49	0.34	0.31	0.19	-0.73	-0.24	Frag>80[4529]
YMR172C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr13:607827-608210	607827-608210	98.0%	116.92	114.26	106.29	98.32	111.60	77.06	115.59	102.30	94.33	0.43	0.42	0.39	-0.12	0.05	Covered/w/another[4529]
YMR173W	DDR48	"DNA damage-responsive protein, expression is increased in response to heat-shock stress or treatments that produce DNA lesions; contains multiple repeats of the amino acid sequence NNNDSYGS"	Verified	chr13:608688-609980	608688-609980	45.4%	1380.58	1716.36	1588.52	1375.47	4157.09	3828.14	1548.47	1482.00	3992.61	5.72	6.02	16.54	1.43	1.33	Frag>80[4530,4531,4532,4533]
YMR173W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene DDR48/YML173W"	Dubious	chr13:608896-610080	608896-610080	40.5%	1486.08	1810.77	1715.03	1498.57	4901.57	4021.16	1648.43	1606.80	4461.37	6.09	6.52	18.48	1.47	1.57	Frag>80[4530,4531,4532,4533]
YMR174C	PAI3	"Cytoplasmic proteinase A (Pep4p) inhibitor, dependent on Pbs2p and Hog1p protein kinases for osmotic induction; intrinsically unstructured, N-terminal half becomes ordered in the active site of proteinase A upon contact"	Verified	chr13:610158-610364	610158-610364	99.7%	53.30	169.59	58.15	48.46	1274.38	1109.63	111.45	53.30	1192.00	0.41	0.22	4.94	4.48	2.20	Matched[4533]
YMR175W	SIP18	Protein of unknown function whose expression is induced by osmotic stress	Verified	chr13:611015-611254	611015-611254	98.0%	17.01	29.77	12.76	17.01	569.81	318.92	23.39	14.88	444.37	0.09	0.06	1.84	4.90	3.26	Matched[4535]
YMR175W-A		Putative protein of unknown function	Uncharacterized	chr13:611313-611507	611313-611507	99.4%	0.00	10.31	5.16	10.31	51.57	25.78	5.16	7.74	38.68	0.02	0.03	0.16	2.32	NaN	Matched[4535]
YMR176W	ECM5	"Non-essential protein of unknown function, contains ATP/GTP-binding site motif A; null mutant exhibits cellular volume up to four times greater than wild-type, also large drooping buds with elongated necks"	Verified	chr13:611739-615974	611739-615974	98.9%	74.97	73.77	53.24	42.26	46.56	41.06	74.37	47.75	43.81	0.27	0.19	0.18	-0.12	0.33	Covered/w/another[4536]
YMR177W	MMT1	Putative metal transporter involved in mitochondrial iron accumulation; closely related to Mmt2p	Verified	chr13:616565-618097	616565-618097	98.8%	122.18	110.96	84.54	68.03	50.85	30.38	116.57	76.28	40.62	0.43	0.31	0.17	-0.91	-0.89	Covered/w/another[4536]
YMR178W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and nucleus and is induced in response to the DNA-damaging agent MMS; YMR178W is not an essential gene	Uncharacterized	chr13:618478-619302	618478-619302	98.8%	333.83	501.97	370.65	348.56	472.51	282.28	417.90	359.60	377.40	1.54	1.46	1.56	0.07	-0.64	Matched[4537]
YMR179W	SPT21	"Protein required for normal transcription at several loci including HTA2-HTB2 and HHF2-HHT2, but not required at the other histone loci; functionally related to Spt10p; involved in telomere maintenance"	Verified	chr13:619857-622133	619857-622133	98.8%	94.72	86.72	70.71	68.04	52.92	31.13	90.72	69.37	42.02	0.33	0.28	0.17	-0.72	-0.14	Covered/w/another[4538]
YMR180C	CTL1	"RNA 5'-triphosphatase, localizes to both the nucleus and cytoplasm"	Verified	chr13:622250-623212	622250-623212	99.0%	114.35	125.89	101.76	77.63	178.35	87.07	120.12	89.70	132.71	0.44	0.36	0.55	0.57	1.01	Covered/w/another[4538]
YMR181C		Protein of unknown function; mRNA transcribed as part of a bicistronic transcript with a predicted transcriptional repressor RGM1/YMR182C; mRNA is destroyed by nonsense-mediated decay (NMD); YMR181C is not an essential gene	Uncharacterized	chr13:623615-624079	623615-624079	98.6%	337.97	436.09	270.37	250.75	843.83	595.26	387.03	260.56	719.54	1.43	1.06	2.98	1.47	1.66	Matched[4540]
YMR182C	RGM1	Putative transcriptional repressor with proline-rich zinc fingers; overproduction impairs cell growth	Verified	chr13:624531-625166	624531-625166	98.4%	179.02	218.98	126.27	103.90	437.96	393.21	199.00	115.08	415.58	0.73	0.47	1.72	1.85	0.13	Matched[4541]
YMR182W-A		Putative protein of unknown function	Uncharacterized	chr13:625810-625896	625810-625896	99.3%	11.58	23.15	34.73	34.73	370.48	173.66	17.37	34.73	272.07	0.06	0.14	1.13	2.97	NaN	Matched[4542]
YMR183C	SSO2	Plasma membrane t-SNARE involved in fusion of secretory vesicles at the plasma membrane; syntaxin homolog that is functionally redundant with Sso1p	Verified	chr13:626920-627807	626920-627807	99.2%	639.23	653.99	646.04	619.93	518.88	449.62	646.61	632.98	484.25	2.39	2.57	2.01	-0.39	0.32	Matched[4544]
YMR184W	ADD37	Protein of unknown function involved in ER-associated protein degradation; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and is induced in response to the DNA-damaging agent MMS; YMR184W is not an essential gene	Verified	chr13:628188-628784	628188-628784	98.7%	198.47	178.12	232.40	174.72	610.69	329.09	188.30	203.56	469.89	0.70	0.83	1.95	1.21	1.10	Frag>80[4545,4546]
YMR185W		Putative protein of unknown function; essential gene required for viability	Uncharacterized	chr13:629024-631969	629024-631969	99.0%	81.94	52.11	31.20	31.54	9.60	6.51	67.03	31.37	8.06	0.25	0.13	0.03	-1.96	-2.54	Matched[4547]
YMR186W	HSC82	"Cytoplasmic chaperone of the Hsp90 family, redundant in function and nearly identical with Hsp82p, and together they are essential; expressed constitutively at 10-fold higher basal levels that HSP82 and induced 2-3 fold by heat shock"	Verified	chr13:632354-634471	632354-634471	60.5%	4763.01	2995.32	4194.85	4745.84	23523.93	20292.92	3879.16	4470.34	21908.43	14.32	18.15	90.77	2.29	1.53	Matched[4548]
YMR187C		Putative protein of unknown function; YMR187C is not an essential gene	Uncharacterized	chr13:634688-635983	634688-635983	99.1%	50.59	63.05	38.14	31.91	21.02	21.79	56.82	35.03	21.40	0.21	0.14	0.09	-0.71	-0.38	Matched[4549]
YMR188C	MRPS17	Mitochondrial ribosomal protein of the small subunit	Verified	chr13:636290-637003	636290-637003	99.5%	408.35	408.35	477.35	442.15	450.60	267.54	408.35	459.75	359.07	1.51	1.87	1.49	-0.36	-0.62	Frag>80[4550,4551]
YMR189W	GCV2	"P subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of 5,10-methylene-THF in the cytoplasm"	Verified	chr13:637499-640603	637499-640603	98.9%	628.53	529.58	686.79	558.55	173.49	125.32	579.05	622.67	149.40	2.14	2.53	0.62	-2.06	-1.52	Matched[4552]
YMR190C	SGS1	"Nucleolar DNA helicase of the RecQ family involved in maintenance of genome integrity, regulates chromosome synapsis and meiotic crossing over; has similarity to human BLM and WRN helicases implicated in Bloom and Werner syndromes"	Verified	chr13:640914-645257	640914-645257	99.2%	56.17	54.54	50.36	45.95	41.54	65.68	55.35	48.16	53.61	0.20	0.20	0.22	0.15	1.06	Matched[4553]
YMR191W	SPG5	Protein required for survival at high temperature during stationary phase; not required for growth on nonfermentable carbon sources	Verified	chr13:645655-646776	645655-646776	98.9%	145.97	144.17	163.09	167.59	267.61	167.59	145.07	165.34	217.60	0.54	0.67	0.90	0.40	0.55	Frag>80[4554,4555]
YMR192W	GYL1	"Putative GTPase activating protein (GAP) that may have a role in polarized exocytosis; stimulates Gyp5p GAP activity on Ypt1p, colocalizes with Gyp5p at sites of polarized growth; interacts with Gyp5p, Rvs161p, and Rvs167p"	Verified	chr13:647117-649279	647117-649279	98.8%	108.05	98.69	88.40	70.63	84.19	81.86	103.37	79.52	83.02	0.38	0.32	0.34	0.06	-0.40	Matched[4556]
YMR193W	MRPL24	Mitochondrial ribosomal protein of the large subunit	Verified	chr13:650035-650811	650035-650811	98.5%	240.44	232.60	308.40	233.91	297.94	193.40	236.52	271.15	245.67	0.87	1.10	1.02	-0.14	-0.03	Matched[4557]
YMR194W	RPL36A	"N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl36Bp and has similarity to rat L36 ribosomal protein; binds to 5.8 S rRNA"	Verified	chr13:651144-651909	651144-651159,651623-651909	71.6%	3621.42	2870.42	2962.56	2142.45	612.79	354.77	3245.92	2552.51	483.78	11.98	10.36	2.00	-2.40	-3.14	Matched[4558]
YMR193C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr13:651071-651457	651071-651457	98.7%	144.03	120.46	133.55	75.94	20.95	5.24	132.24	104.75	13.09	0.49	0.43	0.05	-3.00	-0.15	Matched[4558]
YMR194C-B		Putative protein of unknown function	Uncharacterized	chr13:652593-652886	652593-652774,652847-652886	98.8%	91.20	182.41	232.57	155.04	975.87	433.21	136.80	193.81	704.54	0.51	0.79	2.92	1.86	NaN	Matched[4560]
YMR194C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr13:652911-653135	652911-653135	98.6%	27.04	40.56	76.61	40.56	135.19	63.09	33.80	58.58	99.14	0.12	0.24	0.41	0.76	1.11	Matched[4560]
YMR195W	ICY1	"Protein of unknown function, required for viability in rich media of cells lacking mitochondrial DNA; mutants have an invasive growth defect with elongated morphology; induced by amino acid starvation"	Verified	chr13:654033-654416	654033-654416	98.8%	416.38	1025.15	811.68	838.04	2105.63	961.90	720.76	824.86	1533.77	2.66	3.35	6.35	0.89	0.70	Matched[4562]
YMR196W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YMR196W is not an essential gene	Uncharacterized	chr13:655075-658341	655075-658341	98.6%	84.44	279.10	212.35	222.59	1599.44	1454.15	181.77	217.47	1526.80	0.67	0.88	6.33	2.81	2.60	Frag>80[4563,4564,4565]
YMR197C	VTI1	"Protein involved in cis-Golgi membrane traffic; v-SNARE that interacts with two t-SNARES, Sed5p and Pep12p; required for multiple vacuolar sorting pathways"	Verified	chr13:658544-659197	658544-659197	99.3%	204.84	204.84	218.70	243.34	554.45	318.81	204.84	231.02	436.63	0.76	0.94	1.81	0.92	1.31	Matched[4566]
YMR198W	CIK1	"Kinesin-associated protein required for both karyogamy and mitotic spindle organization, interacts stably and specifically with Kar3p and may function to target this kinesin to a specific cellular role; has similarity to Vik1p"	Verified	chr13:659744-661528	659744-661528	98.5%	90.48	96.17	97.30	96.17	88.20	85.35	93.32	96.74	86.78	0.34	0.39	0.36	-0.16	0.19	Covered/w/another[4567]
YMR199W	CLN1	"G1 cyclin involved in regulation of the cell cycle; activates Cdc28p kinase to promote the G1 to S phase transition; late G1 specific expression depends on transcription factor complexes, MBF (Swi6p-Mbp1p) and SBF (Swi6p-Swi4p)"	Verified	chr13:662643-664283	662643-664283	99.1%	312.47	286.64	329.69	226.97	91.03	46.75	299.55	278.33	68.89	1.11	1.13	0.29	-2.01	-1.59	Covered/w/another[4567]
YMR200W	ROT1	"Essential ER membrane protein; may be involved in protein folding; mutation causes defects in cell wall synthesis and in lysis of autophagic bodies, suppresses tor2 mutations, and is synthetically lethal with kar2-1 and with rot2 mutations"	Verified	chr13:664751-665521	664751-665521	98.9%	393.44	533.77	489.18	392.13	641.31	480.00	463.61	440.66	560.66	1.71	1.79	2.32	0.35	0.80	Matched[4568]
YMR201C	RAD14	Protein that recognizes and binds damaged DNA during nucleotide excision repair; subunit of Nucleotide Excision Repair Factor 1 (NEF1); contains zinc finger motif; homolog of human XPA protein	Verified	chr13:665844-667043	665844-666932,667017-667043	99.4%	89.28	74.85	58.62	50.50	157.82	100.10	82.07	54.56	128.96	0.30	0.22	0.53	1.24	0.87	Matched[4569]
YMR202W	ERG2	"C-8 sterol isomerase, catalyzes the isomerization of the delta-8 double bond to the delta-7 position at an intermediate step in ergosterol biosynthesis"	Verified	chr13:667536-668204	667536-668204	98.8%	1033.22	1116.42	939.43	927.32	593.00	352.47	1074.82	933.38	472.74	3.97	3.79	1.96	-0.98	-0.78	Matched[4570]
YMR203W	TOM40	Component of the TOM (translocase of outer membrane) complex responsible for recognition and initial import steps for all mitochondrially directed proteins; constitutes the core element of the protein conducting pore	Verified	chr13:668491-669654	668491-669654	99.0%	906.92	818.40	933.83	867.00	772.40	696.90	862.66	900.41	734.65	3.18	3.65	3.04	-0.29	0.17	Matched[4571]
YMR204C	INP1	Peripheral membrane protein of peroxisomes involved in peroxisomal inheritance	Verified	chr13:670062-671324	670062-671324	99.2%	81.44	83.04	64.67	74.25	83.04	66.27	82.24	69.46	74.65	0.30	0.28	0.31	0.10	-0.12	Matched[4572]
YMR205C	PFK2	"Beta subunit of heterooctameric phosphofructokinase involved in glycolysis, indispensable for anaerobic growth, activated by fructose-2,6-bisphosphate and AMP, mutation inhibits glucose induction of cell cycle-related genes"	Verified	chr13:671886-674765	671886-674765	98.6%	1275.39	1221.86	1160.57	1031.30	535.02	704.79	1248.62	1095.94	619.91	4.61	4.45	2.57	-0.82	-0.19	Frag>80[4573,4574]
YMR206W		Putative protein of unknown function; YMR206W is not an essential gene	Uncharacterized	chr13:675895-676836	675895-676836	98.9%	19.33	37.59	23.63	31.14	80.54	45.10	28.46	27.38	62.82	0.11	0.11	0.26	1.20	0.54	Covered[4575]
YMR207C	HFA1	"Mitochondrial acetyl-coenzyme A carboxylase, catalyzes the production of malonyl-CoA in mitochondrial fatty acid biosynthesis"	Verified	chr13:677192-683563	677192-683563	99.1%	65.42	74.45	52.27	50.05	27.40	34.69	69.93	51.16	31.05	0.26	0.21	0.13	-0.72	-0.59	Frag<80[4576]
YMR208W	ERG12	"Mevalonate kinase, acts in the biosynthesis of isoprenoids and sterols, including ergosterol, from mevalonate"	Verified	chr13:684466-685797	684466-685797	99.0%	301.96	275.41	270.86	241.27	234.44	164.64	288.69	256.06	199.54	1.07	1.04	0.83	-0.36	-0.02	Matched[4577]
YMR209C		Putative protein of unknown function; YMR209C is not an essential gene	Uncharacterized	chr13:685910-687283	685910-687283	99.1%	147.62	164.51	144.68	135.14	104.29	77.12	156.07	139.91	90.70	0.58	0.57	0.38	-0.63	-0.55	Matched[4578]
YMR210W		"Putative acyltransferase with similarity to Eeb1p and Eht1p, has a minor role in medium-chain fatty acid ethyl ester biosynthesis; may be involved in lipid metabolism and detoxification"	Verified	chr13:687515-688864	687515-688864	98.8%	170.87	219.58	204.59	210.59	344.73	229.32	195.22	207.59	287.03	0.72	0.84	1.19	0.47	0.51	Matched[4579]
YMR211W	DML1	"Essential protein involved in mtDNA inheritance, may also function in the partitioning of the mitochondrial organelle or in the segregation of chromosomes, exhibits regions similar to members of a GTPase family"	Verified	chr13:689082-690509	689082-690509	98.8%	63.06	74.39	47.47	43.22	65.18	37.55	68.72	45.34	51.37	0.25	0.18	0.21	0.18	-0.00	Matched[4580]
YMR212C	EFR3	"Non-essential protein of unknown function; exhibits synthetic lethal genetic interactions with PHO85; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies and is phosphorylated"	Verified	chr13:690694-693042	690694-693042	99.3%	153.94	150.08	130.36	118.78	99.91	81.90	152.01	124.57	90.91	0.56	0.51	0.38	-0.45	-0.50	Matched[4581]
YMR213W	CEF1	"Essential splicing factor; associated with Prp19p and the spliceosome, contains an N-terminal c-Myb DNA binding motif necessary for cell viability but not for Prp19p association, evolutionarily conserved and homologous to S. pombe Cdc5p"	Verified	chr13:693380-695152	693380-695152	98.3%	90.05	92.35	63.67	50.48	82.60	72.85	91.20	57.07	77.72	0.34	0.23	0.32	0.45	0.81	Matched[4582]
YMR214W	SCJ1	"One of several homologs of bacterial chaperone DnaJ, located in the ER lumen where it cooperates with Kar2p to mediate maturation of proteins"	Verified	chr13:695349-696482	695349-696482	98.1%	243.50	203.96	212.05	168.92	339.64	268.65	223.73	190.48	304.14	0.83	0.77	1.26	0.68	1.01	Matched[4583]
YMR215W	GAS3	"Putative 1,3-beta-glucanosyltransferase, has similarity to Gas1p; localizes to the cell wall"	Verified	chr13:696795-698369	696795-698369	99.1%	617.06	695.23	605.53	647.18	351.78	316.54	656.15	626.35	334.16	2.42	2.54	1.38	-0.91	-0.33	Matched[4584]
YMR216C	SKY1	SR protein kinase (SRPK) involved in regulating proteins involved in mRNA metabolism and cation homeostasis; similar to human SRPK1	Verified	chr13:698810-701038	698810-701038	99.1%	211.39	189.21	179.71	157.98	149.38	185.59	200.30	168.84	167.48	0.74	0.69	0.69	-0.01	0.57	Frag>80[4585,4586]
YMR217W	GUA1	"GMP synthase, an enzyme that catalyzes the second step in the biosynthesis of GMP from inosine 5'-phosphate (IMP); transcription is not subject to regulation by guanine but is negatively regulated by nutrient starvation"	Verified	chr13:701789-703366	701789-703366	98.9%	1209.97	553.07	968.36	825.44	143.56	112.15	881.52	896.90	127.85	3.25	3.64	0.53	-2.81	-1.86	Matched[4587]
YMR218C	TRS130	One of 10 subunits of the transport protein particle (TRAPP) complex of the cis-Golgi which mediates vesicle docking and fusion; involved in ER to Golgi membrane traffic; mutation activates transcription of OCH1	Verified	chr13:703578-706886	703578-706886	99.3%	76.39	70.61	69.39	71.83	70.00	60.26	73.50	70.61	65.13	0.27	0.29	0.27	-0.12	-0.43	Matched[4588]
YMR219W	ESC1	"Protein localized to the nuclear periphery, involved in telomeric silencing; interacts with PAD4-domain of Sir4p"	Verified	chr13:707132-712108	707132-712108	98.4%	122.74	143.78	120.90	129.48	114.57	166.45	133.26	125.19	140.51	0.49	0.51	0.58	0.17	0.83	Matched[4589]
YMR220W	ERG8	"Phosphomevalonate kinase, an essential cytosolic enzyme that acts in the biosynthesis of isoprenoids and sterols, including ergosterol, from mevalonate"	Verified	chr13:712315-713670	712315-713670	98.7%	260.85	228.71	277.30	202.55	266.09	198.82	244.78	239.93	232.45	0.90	0.97	0.96	-0.05	0.31	Matched[4590]
YMR221C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr13:713930-715444	713930-715444	98.8%	205.75	173.02	228.46	172.35	86.17	60.79	189.38	200.41	73.48	0.70	0.81	0.30	-1.45	-1.04	Matched[4591]
YMR222C	FSH2	Serine hydrolase that localizes to the cytoplasm; sequence is similar to Fsh1p and Fsh3p	Verified	chr13:715637-716308	715637-716308	98.8%	182.23	152.11	156.63	180.72	191.27	150.60	167.17	168.67	170.93	0.62	0.68	0.71	0.02	0.15	Matched[4592]
YMR223W	UBP8	Ubiquitin-specific protease that is a component of the SAGA (Spt-Ada-Gcn5-Acetyltransferase) acetylation complex; required for SAGA-mediated deubiquitination of histone H2B	Verified	chr13:716714-718129	716714-718129	98.9%	93.51	81.38	92.80	78.52	54.25	54.97	87.45	85.66	54.61	0.32	0.35	0.23	-0.65	-0.32	Covered/w/another[4593]
YMR224C	MRE11	"Subunit of a complex with Rad50p and Xrs2p (RMX complex) that functions in repair of DNA double-strand breaks and in telomere stability, exhibits nuclease activity that appears to be required for RMX function; widely conserved"	Verified	chr13:718574-720652	718574-720652	99.2%	53.36	55.30	58.70	42.69	44.63	39.78	54.33	50.69	42.20	0.20	0.21	0.17	-0.26	0.22	Covered/w/another[4593]
YMR225C	MRPL44	Mitochondrial ribosomal protein of the large subunit	Verified	chr13:720959-721402	720959-721197,721345-721402	99.1%	424.63	424.63	349.89	380.47	407.64	227.60	424.63	365.18	317.62	1.57	1.48	1.32	-0.20	-0.26	Frag>80[4594,4595]
YMR226C		"NADP(+)-dependent dehydrogenase; acts on serine, L-allo-threonine, and other 3-hydroxy acids; green fluorescent protein fusion protein localizes to the cytoplasm and nucleus; may interact with ribosomes, based on co-purification experiments"	Verified	chr13:721592-722395	721592-722395	99.0%	1010.88	870.24	930.51	897.87	1284.64	989.54	940.56	914.19	1137.09	3.47	3.71	4.71	0.31	0.53	Matched[4596]
YMR227C	TAF7	"TFIID subunit (67 kDa), involved in RNA polymerase II transcription initiation"	Verified	chr13:722612-724384	722612-724384	99.1%	111.59	100.20	83.12	76.86	58.07	57.50	105.89	79.99	57.79	0.39	0.32	0.24	-0.47	0.41	Matched[4597]
YMR228W	MTF1	"Mitochondrial RNA polymerase specificity factor with structural similarity to S-adenosylmethionine-dependent methyltransferases and functional similarity to bacterial sigma-factors, interacts with mitochondrial core polymerase Rpo41p"	Verified	chr13:724625-725650	724625-725650	99.0%	106.29	90.54	89.56	68.89	80.70	50.19	98.41	79.22	65.44	0.36	0.32	0.27	-0.28	-0.12	Matched[4598]
YMR229C	RRP5	Protein required for the synthesis of both 18S and 5.8S rRNA; C-terminal region is crucial for the formation of 18S rRNA and N-terminal region is required for the 5.8S rRNA; component of small ribosomal subunit (SSU) processosome	Verified	chr13:725933-731122	725933-731122	99.2%	277.54	148.77	182.37	147.02	17.09	9.13	213.15	164.70	13.11	0.79	0.67	0.05	-3.65	-2.82	Frag>80[4599,4600,4601]
YMR230W	RPS10B	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10	Verified	chr13:732413-733140	732413-732464,732875-733140	68.2%	6008.07	4836.89	4509.51	4315.85	1922.77	1480.12	5422.48	4412.68	1701.44	20.02	17.91	7.05	-1.37	-1.83	Matched[4603]
YMR230W-A		Putative protein of unknown function	Uncharacterized	chr13:733267-733455	733267-733455	99.5%	10.63	5.32	10.63	10.63	10.63	5.32	7.97	10.63	7.97	0.03	0.04	0.03	-0.42	NaN	Overlap[4603]
YMR231W	PEP5	Component of CORVET tethering complex; peripheral vacuolar membrane protein required for protein trafficking and vacuole biogenesis; interacts with Pep7p	Verified	chr13:733544-736633	733544-736633	98.9%	70.06	102.14	71.04	70.06	60.56	51.72	86.10	70.55	56.14	0.32	0.29	0.23	-0.33	0.18	Frag>80[4604,4605]
YMR232W	FUS2	Cytoplasmic protein localized to the shmoo tip; required for the alignment of parental nuclei before nuclear fusion during mating	Verified	chr13:736925-738958	736925-738958	98.9%	25.84	22.36	18.89	16.40	55.17	32.30	24.10	17.64	43.73	0.09	0.07	0.18	1.31	0.92	Frag>80[4605,4606]
YMR233W	TRI1	"Non-essential sumoylated protein of unknown function with similarity to components of human SWI/SNF complex including SMRD3; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm, nucleus and nucleolus"	Verified	chr13:739184-739864	739184-739864	98.4%	201.37	167.06	162.59	114.85	161.09	82.04	184.21	138.72	121.57	0.68	0.56	0.50	-0.19	-0.36	Matched[4607]
YMR234W	RNH1	"Ribonuclease H1, removes RNA primers during Okazaki fragment synthesis; degrades RNA attached to the 5'-end of a DNA strand"	Verified	chr13:740265-741311	740265-741311	98.7%	189.61	131.57	151.88	120.92	117.05	68.68	160.59	136.40	92.87	0.59	0.55	0.38	-0.55	-0.66	Matched[4608]
YMR235C	RNA1	"GTPase activating protein (GAP) for Gsp1p, involved in nuclear transport"	Verified	chr13:741511-742734	741511-742734	99.2%	831.31	640.99	685.48	654.99	455.61	284.24	736.15	670.24	369.93	2.72	2.72	1.53	-0.86	-0.59	Matched[4609]
YMR236W	TAF9	"Subunit (17 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation and in chromatin modification, similar to histone H3"	Verified	chr13:742970-743443	742970-743443	98.4%	381.70	407.43	456.75	338.81	435.31	332.38	394.57	397.78	383.85	1.46	1.61	1.59	-0.05	0.07	Matched[4610]
YMR237W	BCH1	"Member of the Chs5p-Arf1p-binding proteins (ChAPs), a group of 4 related, interacting proteins (Bch1p, Fmp50p, Bud7p, Chs6p) that mediate export of specific cargo proteins, including chitin synthase Chs3p; may interact with ribosomes"	Verified	chr13:743748-745922	743748-745922	98.8%	246.71	266.26	242.52	228.56	381.71	393.81	256.49	235.54	387.76	0.95	0.96	1.61	0.72	0.97	Matched[4611]
YMR238W	DFG5	"Putative mannosidase, essential glycosylphosphatidylinositol (GPI)-anchored membrane protein required for cell wall biogenesis in bud formation, involved in filamentous growth, homologous to Dcw1p"	Verified	chr13:746352-747728	746352-747728	98.6%	240.84	240.84	223.90	240.84	178.97	94.27	240.84	232.37	136.62	0.89	0.94	0.57	-0.77	-0.72	Matched[4612]
YMR239C	RNT1	RNAase III; involved in rDNA transcription and rRNA processing; also cleaves a stem-loop structure at the 3' end of U2 snRNA to ensure formation of the correct U2 3' end	Verified	chr13:748261-749676	748261-749676	99.4%	105.11	66.76	68.89	50.42	10.65	1.42	85.93	59.66	6.04	0.32	0.24	0.03	-3.30	-3.17	Matched[4613]
YMR240C	CUS1	"Protein required for assembly of U2 snRNP into the spliceosome, forms a complex with Hsh49p and Hsh155p"	Verified	chr13:749929-751239	749929-751239	99.3%	86.04	100.64	76.82	77.59	53.01	47.63	93.34	77.21	50.32	0.34	0.31	0.21	-0.62	-0.20	Matched[4614]
YMR241W	YHM2	"Mitochondrial DNA-binding protein, component of the mitochondrial nucleoid structure, involved in mtDNA replication and segregation of mitochondrial genomes; member of the mitochondrial carrier protein family"	Verified	chr13:751960-752904	751960-752904	98.6%	803.50	719.83	844.27	666.19	230.65	143.75	761.67	755.23	187.20	2.81	3.07	0.78	-2.01	-2.09	Matched[4615]
YMR242C	RPL20A	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl20Bp and has similarity to rat L18a ribosomal protein"	Verified	chr13:753224-754219	753224-753741,754219-754219	51.5%	5867.25	4618.26	5074.48	3825.49	785.29	437.52	5242.75	4449.98	611.41	19.35	18.06	2.53	-2.86	-2.75	Frag>80[4616,4617]
YMR242W-A		Putative protein of unknown function	Uncharacterized	chr13:754296-754385	754296-754385	97.8%	45.43	0.00	22.72	11.36	22.72	34.07	22.72	17.04	28.40	0.08	0.07	0.12	0.74	NaN	Covered/w/another[4617]
YMR243C	ZRC1	"Vacuolar membrane zinc transporter, transports zinc from the cytosol into the vacuole for storage; also has a role in resistance to zinc shock resulting from a sudden influx of zinc into the cytoplasm"	Verified	chr13:754837-756165	754837-756165	98.8%	668.68	584.90	606.99	530.83	329.77	284.07	626.79	568.91	306.92	2.31	2.31	1.27	-0.89	-0.50	Frag>80[4618,4619]
YMR244W		Putative protein of unknown function	Uncharacterized	chr13:757249-758316	757249-758316	98.3%	11.43	20.01	5.72	6.67	6.67	27.63	15.72	6.19	17.15	0.06	0.03	0.07	1.47	-0.58	Frag<80[4620,4621]
YMR245W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr13:758562-759182	758562-759182	99.0%	113.81	175.60	112.19	136.58	190.23	160.96	144.71	124.38	175.60	0.53	0.50	0.73	0.50	-0.16	Frag>80[4621,4622]
YMR244C-A		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and nucleus and is induced in response to the DNA-damaging agent MMS; YMR244C-A is not an essential gene	Uncharacterized	chr13:758516-758830	758516-758830	99.1%	224.18	291.43	198.56	224.18	381.10	281.83	257.81	211.37	331.47	0.95	0.86	1.37	0.65	0.24	Matched[4621]
YMR246W	FAA4	"Long chain fatty acyl-CoA synthetase, regulates protein modification during growth in the presence of ethanol, functions to incorporate palmitic acid into phospholipids and neutral lipids"	Verified	chr13:759806-761890	759806-761890	97.3%	511.52	1492.67	453.86	416.41	62.58	33.02	1002.09	435.14	47.80	3.70	1.77	0.20	-3.19	-2.54	Matched[4623]
YMR247C	RKR1	"Nuclear RING domain protein with functional connections to chromatin modification; may interact with ribosomes, based on co-purification experiments; YMR247C is not an essential gene"	Verified	chr13:763350-768038	763350-768038	99.2%	78.27	68.16	62.57	60.21	42.15	50.75	73.22	61.39	46.45	0.27	0.25	0.19	-0.40	-0.14	Frag>80[4625]
YMR247W-A		Putative protein of unknown function	Uncharacterized	chr13:769282-769425	769282-769425	99.1%	28.04	21.03	14.02	49.07	126.17	154.21	24.53	31.54	140.19	0.09	0.13	0.58	2.15	NaN	Covered[4626]
YMR250W	GAD1	"Glutamate decarboxylase, converts glutamate into gamma-aminobutyric acid (GABA) during glutamate catabolism; involved in response to oxidative stress"	Verified	chr13:770800-772557	770800-772557	98.7%	172.38	686.65	363.79	432.40	3858.75	3503.03	429.52	398.10	3680.89	1.59	1.62	15.25	3.21	3.26	Matched[4627]
YMR251W	GTO3	Omega class glutathione transferase; putative cytosolic localization	Verified	chr13:772914-774014	772914-774014	98.4%	16.62	34.17	13.85	20.31	84.95	50.79	25.39	17.08	67.87	0.09	0.07	0.28	1.99	1.18	Matched[4628]
YMR251W-A	HOR7	Protein of unknown function; overexpression suppresses Ca2+ sensitivity of mutants lacking inositol phosphorylceramide mannosyltransferases Csg1p and Csh1p; transcription is induced under hyperosmotic stress and repressed by alpha factor	Verified	chr13:774751-774930	774751-774930	98.9%	8969.81	22129.65	10143.69	10840.16	99212.73	50982.45	15549.73	10491.93	75097.59	57.40	42.59	311.15	2.84	0.37	Matched[4630]
YMR252C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to mitochondria; YMR252C is not an essential gene	Uncharacterized	chr13:775314-775718	775314-775718	99.1%	196.88	284.11	241.74	186.92	229.28	166.98	240.50	214.33	198.13	0.89	0.87	0.82	-0.11	0.35	Covered/w/another[4631]
YMR253C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; YMR253C is not an essential gene	Uncharacterized	chr13:775945-777189	775945-777189	99.1%	70.54	128.10	90.81	84.32	131.35	99.73	99.32	87.56	115.54	0.37	0.36	0.48	0.40	0.73	Matched[4631]
YMR254C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr13:777614-777922	777614-777922	98.9%	19.64	29.46	16.37	22.91	26.19	22.91	24.55	19.64	24.55	0.09	0.08	0.10	0.32	0.43	Matched[4632]
YMR255W	GFD1	"Coiled-coiled protein of unknown function, identified as a high-copy suppressor of a dbp5 mutation"	Verified	chr13:778000-778566	778000-778566	98.6%	336.36	402.56	361.41	309.53	409.72	311.32	369.46	335.47	360.52	1.36	1.36	1.49	0.10	0.24	Matched[4633]
YMR256C	COX7	"Subunit VII of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain"	Verified	chr13:778944-779126	778944-779126	98.7%	653.29	420.76	669.90	780.62	1832.53	1074.05	537.02	725.26	1453.29	1.98	2.94	6.02	1.00	-0.05	Matched[4634]
YMR257C	PET111	Mitochondrial translational activator specific for the COX2 mRNA; located in the mitochondrial inner membrane	Verified	chr13:779628-782030	779628-782030	99.3%	62.43	65.78	59.92	56.14	61.17	39.80	64.11	58.03	50.49	0.24	0.24	0.21	-0.20	0.10	Frag>80[4635,4636]
YMR258C		Protein of unknown function with similarity to F-box proteins; physically interacts with Skp1p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YMR258C is not an essential gene	Uncharacterized	chr13:782619-784280	782619-784280	99.2%	126.12	138.24	129.76	107.32	345.01	298.92	132.18	118.54	321.96	0.49	0.48	1.33	1.44	1.76	Matched[4637]
YMR259C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YMR259C is not an essential gene	Uncharacterized	chr13:784620-788882	784620-788882	99.1%	88.27	67.45	53.25	39.05	14.44	14.20	77.86	46.15	14.32	0.29	0.19	0.06	-1.69	-1.06	Frag>80[4638]
YMR260C	TIF11	"Translation initiation factor eIF1A, essential protein that forms a complex with Sui1p (eIF1) and the 40S ribosomal subunit and scans for the start codon; C-terminus associates with Fun12p (eIF5B); N terminus interacts with eIF2 and eIF3"	Verified	chr13:789377-789838	789377-789838	99.5%	2709.19	1819.90	2133.00	2011.23	1174.13	828.41	2264.54	2072.11	1001.27	8.36	8.41	4.15	-1.05	-1.40	Matched[4639]
YMR261C	TPS3	"Regulatory subunit of trehalose-6-phosphate synthase/phosphatase complex, which synthesizes the storage carbohydrate trehalose; expression is induced by stress conditions and repressed by the Ras-cAMP pathway"	Verified	chr13:790204-793368	790204-793368	98.9%	175.67	247.22	240.19	259.68	542.67	621.24	211.45	249.93	581.95	0.78	1.01	2.41	1.22	1.62	Frag>80[4640,4641]
YMR262W		Protein of unknown function; interacts weakly with Knr4p; YMR262W is not an essential gene	Uncharacterized	chr13:793725-794666	793725-794666	98.5%	100.21	144.38	133.61	110.98	411.60	221.96	122.30	122.30	316.78	0.45	0.50	1.31	1.37	1.46	Matched[4642]
YMR263W	SAP30	"Subunit of a histone deacetylase complex, along with Rpd3p and Sin3p, that is involved in silencing at telomeres, rDNA, and silent mating-type loci; involved in telomere maintenance"	Verified	chr13:794918-795523	794918-795523	95.4%	179.98	188.64	200.75	150.56	134.99	69.22	184.31	175.66	102.11	0.68	0.71	0.42	-0.78	-0.80	Frag>80[4643,4644]
YMR264W	CUE1	Endoplasmic reticulum membrane protein that recruits the ubiquitin-conjugating enzyme Ubc7p to the ER where it functions in protein degradation; contains a CUE domain that binds ubiquitin to facilitate intramolecular monoubiquitination	Verified	chr13:795804-796415	795804-796415	98.3%	395.49	508.48	363.91	345.63	731.15	480.23	451.98	354.77	605.69	1.67	1.44	2.51	0.77	0.25	Matched[4645]
YMR265C		Putative protein of unknown function	Uncharacterized	chr13:796539-797924	796539-797924	98.9%	61.99	59.80	52.51	41.57	74.39	54.70	60.90	47.04	64.54	0.22	0.19	0.27	0.46	0.60	Matched[4646]
YMR266W	RSN1	Membrane protein of unknown function; overexpression suppresses NaCl sensitivity of sro7 mutant	Verified	chr13:798517-801378	798517-801378	99.0%	254.95	209.04	221.75	204.45	79.80	93.57	231.99	213.10	86.69	0.86	0.87	0.36	-1.30	-0.60	Matched[4647]
YMR267W	PPA2	"Mitochondrial inorganic pyrophosphatase, required for mitochondrial function and possibly involved in energy generation from inorganic pyrophosphate"	Verified	chr13:801771-802703	801771-802703	98.7%	229.08	217.14	267.08	260.56	365.87	226.91	223.11	263.82	296.39	0.82	1.07	1.23	0.17	0.11	Matched[4648]
YMR268C	PRP24	Splicing factor that reanneals U4 and U6 snRNPs during spliceosome recycling	Verified	chr13:802887-804221	802887-804221	99.3%	52.08	46.04	45.28	31.70	27.92	23.40	49.06	38.49	25.66	0.18	0.16	0.11	-0.58	-0.40	Matched[4649]
YMR269W	TMA23	Nucleolar protein of unknown function implicated in ribosome biogenesis; TMA23 may be a fungal-specific gene as no homologs have been yet identified in higher eukaryotes	Verified	chr13:804455-805090	804455-805090	97.8%	279.78	202.60	130.24	122.20	64.32	32.16	241.19	126.22	48.24	0.89	0.51	0.20	-1.39	-0.10	Frag>80[4650,4651]
YMR270C	RRN9	"Protein involved in promoting high level transcription of rDNA, subunit of UAF (upstream activation factor) for RNA polymerase I"	Verified	chr13:805325-806422	805325-806422	99.3%	194.41	164.14	162.31	168.73	138.47	83.45	179.28	165.52	110.96	0.66	0.67	0.46	-0.58	-0.41	Matched[4652]
YMR271C	URA10	"One of two orotate phosphoribosyltransferase isozymes (see also URA5) that catalyze the fifth enzymatic step in the de novo biosynthesis of pyrimidines, converting orotate into orotidine-5'-phosphate"	Verified	chr13:806864-807547	806864-807547	99.3%	72.12	163.38	67.71	92.73	322.34	197.23	117.75	80.22	259.78	0.43	0.33	1.08	1.70	1.49	Matched[4653]
YMR272W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene SCS7/YMR272C"	Dubious	chr13:810465-810578	810465-810578	99.5%	679.16	1129.00	723.26	926.13	511.58	529.22	904.08	824.70	520.40	3.34	3.35	2.16	-0.66	NaN	Covered/w/another[4655]
YMR272C	SCS7	"Sphingolipid alpha-hydroxylase, functions in the alpha-hydroxylation of sphingolipid-associated very long chain fatty acids, has both cytochrome b5-like and hydroxylase/desaturase domains, not essential for growth"	Verified	chr13:809622-810776	809622-810776	98.7%	695.56	1166.58	797.31	861.34	528.91	515.75	931.07	829.33	522.33	3.44	3.37	2.16	-0.67	-0.21	Matched[4655]
YMR272W-B		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr13:811088-811195	811088-811195	98.6%	28.18	28.18	37.57	9.39	18.79	18.79	28.18	23.48	18.79	0.10	0.10	0.08	-0.32	NaN	Matched[4656]
YMR273C	ZDS1	"Protein that interacts with silencing proteins at the telomere, involved in transcriptional silencing; has a role in localization of Bcy1p, a regulatory subunit of protein kinase A; implicated in mRNA nuclear export"	Verified	chr13:811232-813979	811232-813979	98.9%	94.17	104.47	80.93	91.60	93.07	99.69	99.32	86.26	96.38	0.37	0.35	0.40	0.16	0.69	Frag>80[4656,4657]
YMR274C	RCE1	Type II CAAX prenyl protease involved in the proteolysis and maturation of Ras and the a-factor mating pheromone	Verified	chr13:814363-815310	814363-815310	98.8%	88.58	102.45	90.72	77.91	74.71	41.62	95.52	84.31	58.16	0.35	0.34	0.24	-0.54	-0.22	Matched[4658]
YMR275C	BUL1	"Ubiquitin-binding component of the Rsp5p E3-ubiquitin ligase complex, functional homolog of Bul2p, disruption causes temperature-sensitive growth, overexpression causes missorting of amino acid permeases"	Verified	chr13:815650-818580	815650-818580	99.0%	112.38	101.35	111.35	90.66	128.93	118.93	106.87	101.01	123.93	0.39	0.41	0.51	0.30	0.32	Matched[4659]
YMR276W	DSK2	"Nuclear-enriched ubiquitin-like polyubiquitin-binding protein, required for spindle pole body (SPB) duplication and for transit through the G2/M phase of the cell cycle, involved in proteolysis, interacts with the proteasome"	Verified	chr13:818826-819947	818826-819947	98.4%	627.84	518.21	674.95	607.90	1099.85	901.44	573.02	641.43	1000.64	2.12	2.60	4.15	0.64	0.84	Matched[4660]
YMR277W	FCP1	"Carboxy-terminal domain (CTD) phosphatase, essential for dephosphorylation of the repeated C-terminal domain of the RNA polymerase II large subunit (Rpo21p)"	Verified	chr13:820255-822453	820255-822453	98.4%	210.67	191.26	182.95	131.67	149.69	132.59	200.97	157.31	141.14	0.74	0.64	0.58	-0.16	0.44	Matched[4661]
YMR278W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YMR278W is not an essential gene	Uncharacterized	chr13:822762-824630	822762-824630	98.8%	141.28	195.40	160.76	207.31	400.55	446.02	168.34	184.04	423.28	0.62	0.75	1.75	1.20	1.45	Matched[4662]
YMR279C		Putative protein of unknown function; identified as a heat-induced gene in a high-throughout screen; YMR279C is not an essential gene	Uncharacterized	chr13:824728-826350	824728-826350	98.9%	70.99	128.91	59.78	62.90	134.51	164.40	99.95	61.34	149.46	0.37	0.25	0.62	1.28	0.71	Covered/w/another[4663]
YMR280C	CAT8	"Zinc cluster transcriptional activator necessary for derepression of a variety of genes under non-fermentative growth conditions, active after diauxic shift, binds carbon source responsive elements"	Verified	chr13:827027-831328	827027-831328	99.1%	32.38	49.27	26.98	30.50	34.02	40.82	40.82	28.74	37.42	0.15	0.12	0.16	0.38	1.05	
YMR281W	GPI12	"ER membrane protein involved in the second step of glycosylphosphatidylinositol (GPI) anchor assembly, the de-N-acetylation of the N-acetylglucosaminylphosphatidylinositol intermediate; functional homolog of human PIG-Lp"	Verified	chr13:832338-833252	832338-833252	99.1%	84.93	82.73	108.10	82.73	175.38	124.64	83.83	95.41	150.01	0.31	0.39	0.62	0.65	0.56	Covered/w/another[4664]
YMR282C	AEP2	"Mitochondrial protein, likely involved in translation of the mitochondrial OLI1 mRNA; exhibits genetic interaction with the OLI1 mRNA 5'-untranslated leader"	Verified	chr13:833355-835097	833355-835097	99.2%	116.24	112.77	88.48	98.31	98.89	66.51	114.51	93.40	82.70	0.42	0.38	0.34	-0.18	-0.42	Covered/w/another[4664]
YMR283C	RIT1	"2'-O-ribosyl phosphate transferase, modifies the initiator methionine tRNA at position 64 to distinguish it from elongator methionine tRNA"	Verified	chr13:835325-836866	835325-836866	99.2%	56.85	56.20	61.42	60.12	50.97	37.25	56.52	60.77	44.11	0.21	0.25	0.18	-0.46	-0.19	Matched[4665]
YMR284W	YKU70	"Subunit of the telomeric Ku complex (Yku70p-Yku80p), involved in telomere length maintenance, structure and telomere position effect; relocates to sites of double-strand cleavage to promote nonhomologous end joining during DSB repair"	Verified	chr13:838186-839994	838186-839994	98.9%	77.16	98.41	94.49	91.70	246.58	178.36	87.78	93.09	212.47	0.32	0.38	0.88	1.19	0.91	Matched[4666]
YMR285C	NGL2	Protein involved in 5.8S rRNA processing; Ccr4p-like RNase required for correct 3'-end formation of 5.8S rRNA at site E; similar to Ngl1p and Ngl3p	Verified	chr13:840143-841690	840143-841690	99.2%	154.94	167.31	153.64	97.00	85.93	60.54	161.12	125.32	73.24	0.59	0.51	0.30	-0.77	-0.33	Matched[4667]
YMR286W	MRPL33	Mitochondrial ribosomal protein of the large subunit	Verified	chr13:841941-842201	841941-842201	98.1%	609.57	386.84	476.72	390.75	441.55	277.43	498.21	433.73	359.49	1.84	1.76	1.49	-0.27	-0.30	Matched[4668]
YMR287C	DSS1	"3'-5' exoribonuclease, component of the mitochondrial degradosome along with the ATP-dependent RNA helicase Suv3p; the degradosome associates with the ribosome and mediates turnover of aberrant or unprocessed RNAs"	Verified	chr13:842435-845344	842435-845344	99.2%	55.09	57.86	50.24	52.67	48.85	41.23	56.48	51.45	45.04	0.21	0.21	0.19	-0.19	0.26	Frag>80[4668,4669,4670]
YMR288W	HSH155	U2-snRNP associated splicing factor that forms extensive associations with the branch site-3' splice site-3' exon region upon prespliceosome formation; similarity to the mammalian U2 snRNP-associated splicing factor SAP155	Verified	chr13:845570-848485	845570-848485	98.8%	70.14	51.73	38.19	44.79	33.68	31.94	60.94	41.49	32.81	0.22	0.17	0.14	-0.34	0.37	Frag>80[4671]
YMR289W	ABZ2	"Aminodeoxychorismate lyase (4-amino-4-deoxychorismate lyase), catalyzes the third step in para-aminobenzoic acid biosynthesis; involved in folic acid biosynthesis"	Verified	chr13:848684-849808	848684-849808	98.8%	178.21	226.81	184.51	161.11	177.31	150.31	202.51	172.81	163.81	0.75	0.70	0.68	-0.08	-0.12	Matched[4672]
YMR290W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps 5' end of essential HAS1 gene which encodes an ATP-dependent RNA helicase"	Dubious	chr13:851421-851768	851421-851768	98.7%	148.51	87.36	116.48	93.18	52.41	29.12	117.93	104.83	40.77	0.44	0.43	0.17	-1.36	-0.35	Frag<80[4674,4675]
YMR290C	HAS1	ATP-dependent RNA helicase; localizes to both the nuclear periphery and nucleolus; highly enriched in nuclear pore complex fractions; constituent of 66S pre-ribosomal particles	Verified	chr13:850073-851590	850073-851590	99.1%	435.23	217.95	299.01	257.81	41.86	20.60	326.59	278.41	31.23	1.21	1.13	0.13	-3.16	-2.19	Matched[4673]
YMR291W		Putative kinase of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YMR291W is not an essential gene	Uncharacterized	chr13:852629-854389	852629-854389	98.8%	259.20	294.83	330.47	256.33	475.87	372.42	277.02	293.40	424.15	1.02	1.19	1.76	0.53	0.74	Matched[4676]
YMR292W	GOT1	"Evolutionarily conserved non-essential protein present in early Golgi cisternae that may be involved in ER-Golgi transport at a step after vesicle tethering to Golgi membranes, exhibits membrane topology similar to that of Sft2p"	Verified	chr13:854794-855292	854794-854815,854898-855292	99.5%	460.56	344.82	412.34	318.30	303.83	147.09	402.69	365.32	225.46	1.49	1.48	0.93	-0.70	-1.18	Frag>80[4677,4678]
YMR293C		"Putative protein similar to bacterial glutamyl-tRNA amidotransferases; may be involved in aerobic respiration; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr13:855398-856792	855398-856792	99.0%	65.15	74.57	73.12	65.15	128.86	88.32	69.86	69.14	108.59	0.26	0.28	0.45	0.65	0.10	Matched[4679]
YMR294W	JNM1	"Component of the yeast dynactin complex, consisting of Nip100p, Jnm1p, and Arp1p; required for proper nuclear migration and spindle partitioning during mitotic anaphase B"	Verified	chr13:856965-858086	856965-858086	98.2%	79.85	80.76	76.22	58.98	116.14	67.15	80.30	67.60	91.64	0.30	0.27	0.38	0.44	-0.07	Matched[4680]
YMR294W-A		"Dubious open reading frame unlikely to encode a functional protein, substantially overlaps YMR295C; deletion causes sensitivity to unfolded protein response-inducing agents"	Dubious	chr13:858208-858567	858208-858567	98.9%	980.45	969.21	977.64	887.74	1320.38	806.27	974.83	932.69	1063.33	3.60	3.79	4.41	0.19	0.03	Matched[4681]
YMR295C		Protein of unknown function that associates with ribosomes; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and bud; YMR295C is not an essential gene	Verified	chr13:858296-858889	858296-858889	98.8%	972.47	1015.04	962.25	877.09	1209.20	807.27	993.76	919.67	1008.23	3.67	3.73	4.18	0.13	-0.01	Frag>80[4681,4682]
YMR296C	LCB1	"Component of serine palmitoyltransferase, responsible along with Lcb2p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine"	Verified	chr13:859214-860890	859214-860890	98.4%	492.67	404.80	442.37	398.74	273.30	220.58	448.73	420.55	246.94	1.66	1.71	1.02	-0.77	-0.09	Matched[4683]
YMR297W	PRC1	"Vacuolar carboxypeptidase Y (proteinase C), broad-specificity C-terminal exopeptidase involved in non-specific protein degradation in the vacuole; member of the serine carboxypeptidase family"	Verified	chr13:861921-863519	861921-863519	98.7%	1382.87	2154.80	1550.82	1475.40	2388.66	2508.44	1768.83	1513.11	2448.55	6.53	6.14	10.15	0.69	0.79	Matched[4684]
YMR298W	LIP1	"Ceramide synthase subunit; single-span ER membrane protein associated with Lag1p and Lac1p and required for ceramide synthase activity, null mutant grows extremely slowly and is defective in ceramide synthesis"	Verified	chr13:863818-864270	863818-864270	98.9%	696.30	874.84	620.42	716.38	758.79	540.08	785.57	668.40	649.43	2.90	2.71	2.69	-0.04	-0.29	Matched[4685]
YMR299C	DYN3	"Dynein light intermediate chain (LIC); localizes with dynein, null mutant is defective in nuclear migration"	Verified	chr13:864411-865349	864411-865349	99.4%	156.43	161.79	135.00	102.86	117.86	79.29	159.11	118.93	98.57	0.59	0.48	0.41	-0.27	-0.71	Matched[4686]
YMR300C	ADE4	"Phosphoribosylpyrophosphate amidotransferase (PRPPAT; amidophosphoribosyltransferase), catalyzes first step of the 'de novo' purine nucleotide biosynthetic pathway"	Verified	chr13:865558-867090	865558-867090	99.3%	1306.94	989.57	1287.23	921.23	188.58	87.39	1148.25	1104.23	137.99	4.24	4.48	0.57	-3.00	-3.09	Matched[4687]
YMR301C	ATM1	"Mitochondrial inner membrane ATP-binding cassette (ABC) transporter, exports mitochondrially synthesized precursors of iron-sulfur (Fe/S) clusters to the cytosol"	Verified	chr13:867554-869626	867554-869626	99.0%	150.09	134.49	120.36	112.08	36.55	20.47	142.29	116.22	28.51	0.53	0.47	0.12	-2.03	-0.95	Matched[4688]
YMR302C	YME2	Integral inner mitochondrial membrane protein with a role in maintaining mitochondrial nucleoid structure and number; mutants exhibit an increased rate of mitochondrial DNA escape; shows some sequence similarity to exonucleases	Verified	chr13:870072-872624	870072-872624	99.1%	147.07	166.44	170.40	170.00	254.61	241.56	156.76	170.20	248.09	0.58	0.69	1.03	0.54	0.81	Matched[4689]
YMR303C	ADH2	"Glucose-repressible alcohol dehydrogenase II, catalyzes the conversion of ethanol to acetaldehyde; involved in the production of certain carboxylate esters; regulated by ADR1"	Verified	chr13:873290-874336	873290-874336	73.1%	24.84	20.92	16.99	19.61	15.69	14.38	22.88	18.30	15.03	0.08	0.07	0.06	-0.28	0.13	
YMR304W	UBP15	Ubiquitin-specific protease that may play a role in ubiquitin precursor processing	Verified	chr13:874986-878678	874986-878678	98.8%	114.01	137.58	135.11	135.93	201.98	240.62	125.79	135.52	221.30	0.46	0.55	0.92	0.71	1.22	Matched[4690]
YMR304C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene SCW10"	Dubious	chr13:878779-879129	878779-879129	97.2%	1143.42	677.25	900.07	759.35	225.75	85.02	910.33	829.71	155.39	3.36	3.37	0.64	-2.42	-2.35	Covered/w/another[4691]
YMR305C	SCW10	Cell wall protein with similarity to glucanases; may play a role in conjugation during mating based on mutant phenotype and its regulation by Ste12p	Verified	chr13:879062-880231	879062-880231	98.0%	1314.48	871.38	1216.79	1078.10	122.99	29.66	1092.93	1147.45	76.32	4.03	4.66	0.32	-3.91	-3.49	Matched[4691]
YMR306W	FKS3	"Protein involved in spore wall assembly, has similarity to 1,3-beta-D-glucan synthase catalytic subunits Fks1p and Gsc2p; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr13:881158-886515	881158-886515	98.9%	13.59	16.99	10.76	7.17	13.02	9.44	15.29	8.97	11.23	0.06	0.04	0.05	0.32	1.27	
YMR306C-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr13:886182-886571	886182-886571	98.9%	12.96	20.73	18.14	12.96	59.61	20.73	16.85	15.55	40.17	0.06	0.06	0.17	1.37	0.41	
YMR307W	GAS1	"Beta-1,3-glucanosyltransferase, required for cell wall assembly; localizes to the cell surface via a glycosylphosphatidylinositol (GPI) anchor"	Verified	chr13:887002-888681	887002-888681	99.0%	3665.58	3071.68	3211.74	3005.56	727.35	530.18	3368.63	3108.65	628.76	12.44	12.62	2.61	-2.31	-1.82	Matched[4692]
YMR307C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified gene GAS1/YMR307W"	Dubious	chr13:887730-887924	887730-887924	99.0%	3501.08	3200.69	3314.63	3128.18	678.46	637.03	3350.88	3221.41	657.75	12.37	13.08	2.73	-2.29	NaN	Covered/w/another[4692]
YMR308C	PSE1	"Karyopherin/importin that interacts with the nuclear pore complex; acts as the nuclear import receptor for specific proteins, including Pdr1p, Yap1p, Ste12p, and Aft1p"	Verified	chr13:888951-892220	888951-892220	99.1%	373.58	289.91	283.42	243.29	109.29	121.64	331.74	263.36	115.47	1.22	1.07	0.48	-1.19	-0.59	Matched[4693]
YMR309C	NIP1	"Subunit of the eukaryotic translation initiation factor 3 (eIF3), involved in the assembly of preinitiation complex and start codon selection"	Verified	chr13:892987-895425	892987-895425	99.1%	540.93	402.39	415.63	366.41	86.85	88.09	471.66	391.02	87.47	1.74	1.59	0.36	-2.16	-1.66	Matched[4694]
YMR310C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; YMR310C is not an essential gene	Uncharacterized	chr13:895715-896668	895715-896668	98.6%	166.87	88.22	88.22	98.85	17.01	5.31	127.55	93.53	11.16	0.47	0.38	0.05	-3.07	-3.08	Matched[4695]
YMR311C	GLC8	"Regulatory subunit of protein phosphatase 1 (Glc7p), involved in glycogen metabolism and chromosome segregation; proposed to regulate Glc7p activity via conformational alteration; ortholog of the mammalian protein phosphatase inhibitor 2"	Verified	chr13:896913-897602	896913-897602	99.3%	553.42	624.97	589.92	587.00	1279.14	794.35	589.19	588.46	1036.75	2.17	2.39	4.30	0.82	0.52	Matched[4696]
YMR312W	ELP6	"Subunit of Elongator complex, which is required for modification of wobble nucleosides in tRNA; required for Elongator structural integrity"	Verified	chr13:898404-899225	898404-899225	99.3%	175.19	122.51	131.09	110.26	47.78	22.05	148.85	120.67	34.92	0.55	0.49	0.14	-1.79	-1.09	Matched[4697]
YMR313C	TGL3	"Triacylglycerol lipase of the lipid particle, responsible for all the TAG lipase activity of the lipid particle; contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes"	Verified	chr13:899378-901306	899378-901306	99.2%	123.91	134.89	123.39	111.89	137.51	127.57	129.40	117.64	132.54	0.48	0.48	0.55	0.17	0.07	Matched[4698]
YMR314W	PRE5	20S proteasome alpha-type subunit	Verified	chr13:901708-902412	901708-902412	98.5%	865.42	820.78	861.10	871.18	1399.65	858.22	843.10	866.14	1128.94	3.11	3.52	4.68	0.38	0.56	Matched[4699]
YMR315W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YMR315W is not an essential gene	Uncharacterized	chr13:902799-903848	902799-903848	98.8%	555.00	824.80	590.65	593.54	1731.49	1275.73	689.90	592.10	1503.61	2.55	2.40	6.23	1.34	1.61	Frag>80[4700,4701]
YMR315W-A		Putative protein of unknown function	Uncharacterized	chr13:904285-904392	904285-904392	98.4%	0.00	28.24	0.00	9.41	37.65	18.82	14.12	4.71	28.24	0.05	0.02	0.12	2.58	NaN	Matched[4702]
YMR316W	DIA1	"Protein of unknown function, involved in invasive and pseudohyphal growth; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern"	Verified	chr13:904823-905833	904823-905833	98.6%	43.12	45.13	55.15	36.10	113.32	77.22	44.12	45.63	95.27	0.16	0.19	0.39	1.06	1.30	Matched[4703]
YMR316C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified gene DIA1/YMR316W"	Dubious	chr13:905660-905971	905660-905971	98.6%	35.74	51.99	71.49	13.00	90.98	45.49	43.87	42.24	68.24	0.16	0.17	0.28	0.69	-0.18	Covered/w/another[4703]
YMR317W		Putative protein of unknown function with some similarity to sialidase from Trypanosoma; YMR317W is not an essential gene	Uncharacterized	chr13:907362-910784	907362-910784	87.7%	40.99	50.99	30.66	32.32	45.65	53.32	45.99	31.49	49.49	0.17	0.13	0.21	0.65	0.38	Frag>80[4704,4705,4706]
YMR316C-B		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr13:907319-907627	907319-907627	99.3%	74.94	117.30	81.46	55.39	91.23	84.71	96.12	68.42	87.97	0.35	0.28	0.36	0.36	1.06	Matched[4704]
YMR318C	ADH6	NADPH-dependent medium chain alcohol dehydrogenase with broad substrate specificity; member of the cinnamyl family of alcohol dehydrogenases; may be involved in fusel alcohol synthesis or in aldehyde tolerance	Verified	chr13:911059-912141	911059-912141	98.9%	795.18	614.12	802.64	758.78	500.25	404.12	704.65	780.71	452.19	2.60	3.17	1.87	-0.79	-0.44	Frag>80[4706,4707,4708]
YMR319C	FET4	Low-affinity Fe(II) transporter of the plasma membrane	Verified	chr13:912878-914536	912878-914536	99.2%	402.66	675.35	335.25	309.13	171.27	138.47	539.01	322.19	154.87	1.99	1.31	0.64	-1.06	-0.81	Matched[4709]
YMR320W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr13:916744-917049	916744-917049	99.1%	79.14	158.29	52.76	32.98	19.79	13.19	118.71	42.87	16.49	0.44	0.17	0.07	-1.38	-0.86	Covered[4710]
YMR321C		Putative protein of unknown function	Uncharacterized	chr13:917577-917894	917577-917894	11.7%	26.88	53.75	0.00	26.88	53.75	0.00	40.31	13.44	26.88	0.15	0.05	0.11	1.00	-1.88	Overlap[4710]
YMR322C	SNO4	"Possible chaperone and cysteine protease with similarity to E. coli Hsp31 and S. cerevisiae Hsp31p, Hsp32p, and Hsp33p; member of the DJ-1/ThiJ/PfpI superfamily; may have a role in pyridoxine metabolism"	Uncharacterized	chr13:918364-919077	918364-919077	3.7%	0.00	0.00	0.00	0.00	0.00	37.85	0.00	0.00	18.93	0.00	0.00	0.08	Inf	2.04	
YMR323W	ERR3	"Protein of unknown function, has similarity to enolases"	Verified	chr13:920086-921399	920086-921399	7.0%	0.00	0.00	0.00	0.00	21.61	10.81	0.00	0.00	16.21	0.00	0.00	0.07	Inf	3.62	
YMR324C		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data; transcription is AZF1 dependent in glycerol-lactate medium and SLT2 dependent in response to the lipid hydroperoxides"	Dubious	chr13:922200-922442	922200-922442	19.6%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	-0.03	
YMR325W		Hypothetical protein	Uncharacterized	chr13:922639-923013	922639-923013	5.7%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.58	
YMR326C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the telomere on the right arm of chromosome 13"	Dubious	chr13:923492-923800	923492-923800	47.5%	0.00	6.81	0.00	0.00	0.00	6.81	3.41	0.00	3.41	0.01	0.00	0.01	Inf	-0.02	
YNL339W-B		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr14:734-1216	734-1216	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YNL339W-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr14:1517-2092	1517-2092	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YNL339C	YRF1-6	"Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p"	Verified	chr14:371-6098	371-5931,6080-6098	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.20	
YNL338W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps TEL14L-XC, which is Telomeric X element Core sequence on the left arm of Chromosome XIV"	Dubious	chr14:6561-6719	6561-6719	43.7%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	NaN	
YNL337W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr14:7165-7419	7165-7419	2.1%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	-0.61	
YNL336W	COS1	"Protein of unknown function, member of the DUP380 subfamily of conserved, often subtelomerically-encoded proteins"	Verified	chr14:8330-9475	8330-9475	4.6%	438.44	209.69	209.69	266.88	476.57	362.19	324.07	238.28	419.38	1.20	0.97	1.74	0.82	0.17	Frag<80[4711,4712]
YNL335W		Hypothetical protein	Uncharacterized	chr14:11452-12129	11452-12129	0.6%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.38	
YNL334C	SNO2	"Protein of unknown function, nearly identical to Sno3p; expression is induced before the diauxic shift and also in the absence of thiamin"	Verified	chr14:12208-12876	12208-12876	0.7%	206.90	0.00	0.00	0.00	0.00	0.00	103.45	0.00	0.00	0.38	0.00	0.00	NaN	0.56	
YNL333W	SNZ2	"Member of a stationary phase-induced gene family; transcription of SNZ2 is induced prior to diauxic shift, and also in the absence of thiamin in a Thi2p-dependent manner; forms a coregulated gene pair with SNO2; interacts with Thi11p"	Verified	chr14:13267-14163	13267-14163	5.2%	42.82	21.41	107.05	0.00	64.23	42.82	32.11	53.52	53.52	0.12	0.22	0.22	0.00	-0.19	
YNL332W	THI12	"Protein involved in synthesis of the thiamine precursor hydroxymethylpyrimidine (HMP); member of a subtelomeric gene family including THI5, THI11, THI12, and THI13"	Verified	chr14:14832-15854	14832-15854	3.4%	0.00	0.00	0.00	28.99	28.99	0.00	0.00	14.49	14.49	0.00	0.06	0.06	0.00	0.86	
YNL331C	AAD14	Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role	Verified	chr14:16118-17248	16118-17248	46.8%	43.43	45.32	47.21	41.55	54.76	39.66	44.38	44.38	47.21	0.16	0.18	0.20	0.09	0.70	Frag<80[4713,4714,4715]
YNL330C	RPD3	Histone deacetylase; regulates transcription and silencing	Verified	chr14:18001-19302	18001-19302	99.2%	296.52	318.97	307.35	283.35	404.13	287.23	307.74	295.35	345.68	1.14	1.20	1.43	0.23	0.43	Matched[4716]
YNL329C	PEX6	AAA-peroxin that heterodimerizes with AAA-peroxin Pex6p and participates in the recycling of peroxisomal signal receptor Pex5p from the peroxisomal membrane to the cystosol	Verified	chr14:19541-22633	19541-22633	99.0%	78.70	93.72	69.88	59.76	69.88	45.72	86.21	64.82	57.80	0.32	0.26	0.24	-0.17	0.27	Covered/w/another[4717]
YNL328C	MDJ2	Constituent of the mitochondrial import motor associated with the presequence translocase; function overlaps with that of Pam18p; stimulates the ATPase activity of Ssc1p to drive mitochondrial import; contains a J domain	Verified	chr14:22834-23274	22834-23274	98.9%	25.23	48.17	36.70	27.53	50.46	57.34	36.70	32.11	53.90	0.14	0.13	0.22	0.75	1.46	Covered/w/another[4717]
YNL327W	EGT2	"Glycosylphosphatidylinositol (GPI)-anchored cell wall endoglucanase required for proper cell separation after cytokinesis, expression is activated by Swi5p and tightly regulated in a cell cycle-dependent manner"	Verified	chr14:24047-27172	24047-27172	94.6%	534.74	522.23	474.91	377.90	306.24	209.23	528.48	426.40	257.74	1.95	1.73	1.07	-0.73	-0.57	Matched[4718]
YNL326C	PFA3	"Palmitoyltransferase for Vac8p, required for vacuolar membrane fusion; contains an Asp-His-His-Cys-cysteine rich (DHHC-CRD) domain; autoacylates; required for vacuolar integrity under stress conditions"	Verified	chr14:27336-28346	27336-28346	99.1%	95.86	115.84	99.86	94.87	134.81	76.89	105.85	97.36	105.85	0.39	0.40	0.44	0.12	-0.09	Matched[4719]
YNL324W		"Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr14:31049-31444	31049-31444	99.6%	10.14	25.36	17.75	20.29	12.68	25.36	17.75	19.02	19.02	0.07	0.08	0.08	0.00	0.09	Covered/w/another[4720]
YNL325C	FIG4	"Protein that forms a complex with Vac14p and is involved in turnover of PI3,5P2 (phosphatidylinositol 3,5-bisphosphate) after hyperosmotic shock; required for efficient mating; member of a protein family with a domain homologous to Sac1p"	Verified	chr14:28738-31377	28738-31377	99.3%	30.14	41.96	33.57	31.66	47.30	27.85	36.05	32.62	37.58	0.13	0.13	0.16	0.20	0.02	Matched[4720]
YNL323W	LEM3	"Membrane protein of the plasma membrane and ER, involved in translocation of phospholipids and alkylphosphocholine drugs across the plasma membrane"	Verified	chr14:31943-33187	31943-33187	98.6%	289.18	255.78	241.12	241.12	225.64	175.95	272.48	241.12	200.79	1.01	0.98	0.83	-0.26	-0.14	Matched[4721]
YNL322C	KRE1	Cell wall glycoprotein involved in beta-glucan assembly; serves as a K1 killer toxin membrane receptor	Verified	chr14:33293-34234	33293-34234	98.1%	741.11	872.02	812.51	687.01	1402.15	1297.21	806.56	749.76	1349.68	2.98	3.04	5.59	0.85	0.82	Matched[4722]
YNL321W	VNX1	Low affinity vacuolar membrane localized monovalent cation/H+ antiporter; member of the calcium exchanger (CAX) family; potential Cdc28p substrate	Verified	chr14:34695-37421	34695-37421	98.9%	130.83	162.70	138.61	131.94	163.81	206.43	146.76	135.27	185.12	0.54	0.55	0.77	0.45	0.97	Matched[4723]
YNL320W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr14:37699-38553	37699-38553	98.9%	153.74	191.58	147.83	149.01	273.18	163.20	172.66	148.42	218.19	0.64	0.60	0.90	0.56	0.46	Frag>80[4724,4725]
YNL319W		Dubious open reading frame unlikely to encode a protein; partially overlaps the verified gene HXT14	Dubious	chr14:38641-39081	38641-39081	99.4%	25.10	13.69	20.54	9.13	22.82	9.13	19.40	14.83	15.97	0.07	0.06	0.07	0.11	0.03	Frag<80[4725]
YNL318C	HXT14	"Protein with similarity to hexose transporter family members, expression is induced in low glucose and repressed in high glucose; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr14:38706-40328	38706-40328	99.3%	4.34	3.72	1.24	0.00	3.10	4.96	4.03	0.62	4.03	0.01	0.00	0.02	2.70	0.97	Frag<80[4725]
YNL317W	PFS2	Integral subunit of the pre-mRNA cleavage and polyadenylation factor (CPF) complex; plays an essential role in mRNA 3'-end formation by bridging different processing factors and thereby promoting the assembly of the processing complex	Verified	chr14:40618-42015	40618-42015	98.7%	89.12	102.16	103.61	94.92	106.51	93.47	95.64	99.27	99.99	0.35	0.40	0.41	0.01	0.41	Covered/w/another[4726]
YNL316C	PHA2	"Prephenate dehydratase, catalyzes the conversion of prephanate to phenylpyruvate, which is a step in the phenylalanine biosynthesis pathway"	Verified	chr14:42070-43074	42070-43074	98.9%	85.53	75.47	92.58	66.42	94.59	60.38	80.50	79.50	77.48	0.30	0.32	0.32	-0.04	0.23	Covered/w/another[4726]
YNL315C	ATP11	"Molecular chaperone, required for the assembly of alpha and beta subunits into the F1 sector of mitochondrial F1F0 ATP synthase"	Verified	chr14:43323-44279	43323-44279	99.0%	458.92	407.23	417.78	416.72	309.11	239.48	433.07	417.25	274.30	1.60	1.69	1.14	-0.61	-0.25	Matched[4727]
YNL314W	DAL82	"Positive regulator of allophanate inducible genes; binds a dodecanucleotide sequence upstream of all genes that are induced by allophanate; contains an UISALL DNA-binding, a transcriptional activation, and a coiled-coil domain"	Verified	chr14:44446-45213	44446-45213	98.7%	72.59	84.47	65.99	68.63	125.38	69.95	78.53	67.31	97.66	0.29	0.27	0.40	0.54	1.07	Matched[4728]
YNL313C		"Putative protein of unknown function; identified as interacting with Kar2p, Grs1p, and Tub3p in high-throughput TAP-tagging experiments; YNL313C is an essential gene"	Uncharacterized	chr14:45307-48021	45307-48021	99.0%	113.07	75.88	85.17	72.16	10.79	7.07	94.47	78.67	8.93	0.35	0.32	0.04	-3.14	-2.23	Matched[4729]
YNL312W	RFA2	"Subunit of heterotrimeric Replication Protein A (RPA), which is a highly conserved single-stranded DNA binding protein involved in DNA replication, repair, and recombination"	Verified	chr14:48286-49215	48286-48292,48401-49215	98.7%	346.34	258.83	341.41	274.86	271.16	134.35	302.59	308.13	202.75	1.12	1.25	0.84	-0.60	-0.72	Matched[4730]
YNL311C		"Protein of unknown function that may interact with ribosomes, based on co-purification experiments; putative F-box protein; analysis of integrated high-throughput datasets predicts involvement in ubiquitin-dependent protein catabolism"	Verified	chr14:49396-51687	49396-51687	99.1%	79.22	89.78	69.10	58.98	35.65	26.85	84.50	64.04	31.25	0.31	0.26	0.13	-1.04	-0.76	Matched[4731]
YNL310C	ZIM17	Heat shock protein with a zinc finger motif; essential for protein import into mitochondria; may act with Pam18p to facilitate recognition and folding of imported proteins by Ssc1p (mtHSP70) in the mitochondrial matrix	Verified	chr14:51906-52430	51906-52430	98.9%	215.80	240.85	198.46	163.78	337.19	227.36	228.32	181.12	282.27	0.84	0.74	1.17	0.64	0.72	Matched[4732]
YNL309W	STB1	"Protein with a role in regulation of MBF-specific transcription at Start, phosphorylated by Cln-Cdc28p kinases in vitro; unphosphorylated form binds Swi6p and binding is required for Stb1p function; expression is cell-cycle regulated"	Verified	chr14:52661-53923	52661-53923	98.7%	78.64	81.85	95.49	53.76	52.16	38.52	80.25	74.63	45.34	0.30	0.30	0.19	-0.72	-0.20	Matched[4733]
YNL308C	KRI1	Essential nucleolar protein required for 40S ribosome biogenesis; physically and functionally interacts with Krr1p	Verified	chr14:54121-55896	54121-55896	99.4%	542.17	292.90	367.11	273.07	49.85	34.56	417.53	320.09	42.21	1.54	1.30	0.17	-2.92	-1.84	Matched[4734]
YNL307C	MCK1	Protein serine/threonine/tyrosine (dual-specificity) kinase involved in control of chromosome segregation and in regulating entry into meiosis; related to mammalian glycogen synthase kinases of the GSK-3 family	Verified	chr14:56446-57573	56446-57573	98.9%	790.68	724.34	745.85	735.10	603.32	520.84	757.51	740.48	562.08	2.80	3.01	2.33	-0.40	-0.04	Matched[4736]
YNL306W	MRPS18	"Mitochondrial ribosomal protein of the small subunit; essential for viability, unlike most other mitoribosomal proteins"	Verified	chr14:58155-58808	58155-58808	98.4%	663.39	618.33	716.21	598.14	776.80	518.90	640.86	657.17	647.85	2.37	2.67	2.68	-0.02	0.22	Matched[4737]
YNL305C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the vacuole; YNL305C is not an essential gene	Uncharacterized	chr14:58898-59791	58898-59791	98.1%	232.54	370.48	299.80	330.58	1046.45	755.77	301.51	315.19	901.11	1.11	1.28	3.73	1.52	1.25	Matched[4738]
YNL304W	YPT11	Rab-type small GTPase that interacts with the C-terminal tail domain of Myo2p to mediate distribution of mitochondria to daughter cells	Verified	chr14:60297-61550	60297-61550	98.5%	50.21	72.08	44.54	52.64	68.84	49.40	61.15	48.59	59.12	0.23	0.20	0.24	0.28	0.51	Matched[4739]
YNL303W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr14:61510-61857	61510-61857	99.5%	196.30	178.98	127.01	124.13	49.07	25.98	187.64	125.57	37.53	0.69	0.51	0.16	-1.74	0.59	Overlap[4739,4740]
YNL302C	RPS19B	"Protein component of the small (40S) ribosomal subunit, required for assembly and maturation of pre-40 S particles; mutations in human RPS19 are associated with Diamond Blackfan anemia; nearly identical to Rps19Ap"	Verified	chr14:61958-62943	61958-62372,62924-62943	61.3%	8028.75	7042.50	7477.50	6401.25	1890.00	1863.75	7535.62	6939.38	1876.88	27.82	28.17	7.78	-1.89	-2.62	Matched[4740]
YNL301C	RPL18B	"Protein component of the large (60S) ribosomal subunit, identical to Rpl18Ap and has similarity to rat L18 ribosomal protein"	Verified	chr14:63570-64562	63570-64018,64451-64562	45.5%	1268.93	908.62	963.45	618.80	477.81	238.90	1088.77	791.12	358.36	4.02	3.21	1.48	-1.14	-1.41	Matched[4741]
YNL300W		"Glycosylphosphatidylinositol-dependent cell wall protein, expression is periodic and decreases in respone to ergosterol perturbation or upon entry into stationary phase; depletion increases resistance to lactic acid"	Uncharacterized	chr14:65744-66052	65744-66052	99.0%	1418.11	1094.62	1444.25	1094.62	169.91	65.35	1256.36	1269.43	117.63	4.64	5.15	0.49	-3.43	-3.44	Matched[4743]
YNL299W	TRF5	"Poly (A) polymerase involved in nuclear RNA quality control based on: homology with Trf4p, genetic interactions with TRF4 mutants, physical interaction with Mtr4p (TRAMP subunit), and by direct assay; disputed role as a sigma DNA polymerase"	Verified	chr14:66517-68445	66517-68445	98.5%	81.58	56.31	31.05	33.16	10.53	6.32	68.94	32.10	8.42	0.25	0.13	0.03	-1.93	-1.13	Matched[4744]
YNL298W	CLA4	"Cdc42p activated signal transducing kinase of the PAK (p21-activated kinase) family, involved in septin ring assembly and cytokinesis; directly phosphorylates septins Cdc3p and Cdc10p; other yeast PAK family members are Ste20p and Skm1p"	Verified	chr14:68915-71443	68915-71443	98.5%	112.75	114.36	109.54	92.29	54.97	60.19	113.55	100.91	57.58	0.42	0.41	0.24	-0.81	-0.30	Matched[4745]
YNL296W		"Dubious open reading frame unlikely to encode a functional protein; deletion adversely affects sporulation; deletion mutant exhibits synthetic phenotype under expression of mutant huntingtin fragment, but gene does not have human ortholog"	Dubious	chr14:76273-76587	76273-76587	98.5%	12.89	22.56	22.56	32.23	35.46	41.90	17.73	27.40	38.68	0.07	0.11	0.16	0.50	NaN	Covered/w/another[4746]
YNL297C	MON2	"Peripheral membrane protein with a role in endocytosis and vacuole integrity, interacts with Arl1p and localizes to the endosome; member of the Sec7p family of proteins"	Verified	chr14:71673-76583	71673-76583	99.1%	109.50	123.67	99.02	104.36	92.04	102.31	116.58	101.69	97.17	0.43	0.41	0.40	-0.07	0.12	Matched[4746]
YNL295W		Putative protein of unknown function	Uncharacterized	chr14:76946-78520	76946-78520	98.6%	59.86	66.29	48.27	53.42	72.73	64.36	63.07	50.85	68.55	0.23	0.21	0.28	0.43	0.43	Matched[4747]
YNL294C	RIM21	"Component of the RIM101 pathway, has a role in cell wall construction and alkaline pH response; has similarity to A. nidulans PalH"	Verified	chr14:78659-80260	78659-80260	99.1%	153.04	172.56	145.48	131.00	231.13	141.07	162.80	138.24	186.10	0.60	0.56	0.77	0.43	0.64	Matched[4748]
YNL293W	MSB3	"GTPase-activating protein for Sec4p and several other Rab GTPases, regulates exocytosis via its action on Sec4p, also required for proper actin organization; similar to Msb4p; both Msb3p and Msb4p localize to sites of polarized growth"	Verified	chr14:80640-82541	80640-82541	98.5%	72.04	70.44	70.97	61.36	193.70	130.20	71.24	66.17	161.95	0.26	0.27	0.67	1.29	1.01	Matched[4749]
YNL292W	PUS4	"Pseudouridine synthase, catalyzes only the formation of pseudouridine-55 (Psi55), a highly conserved tRNA modification, in mitochondrial and cytoplasmic tRNAs; PUS4 overexpression leads to translational derepression of GCN4 (Gcd- phenotype)"	Verified	chr14:82806-84017	82806-84017	98.3%	193.83	155.23	164.46	141.80	52.02	36.92	174.53	153.13	44.47	0.64	0.62	0.18	-1.78	-1.33	Matched[4750]
YNL291C	MID1	"N-glycosylated integral membrane protein of the ER membrane and plasma membrane, functions as a stretch-activated Ca2+-permeable cation channel required for Ca2+ influx stimulated by pheromone; interacts with Cch1p; forms an oligomer"	Verified	chr14:84169-85815	84169-85815	98.9%	187.21	190.90	177.39	138.72	108.64	92.07	189.05	158.06	100.36	0.70	0.64	0.42	-0.66	-0.61	Matched[4751]
YNL290W	RFC3	"Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon"	Verified	chr14:86218-87240	86218-87240	98.2%	271.71	221.95	221.95	206.02	211.00	140.33	246.83	213.98	175.67	0.91	0.87	0.73	-0.28	0.03	Frag>80[4752,4753]
YNL289W	PCL1	"Pho85 cyclin of the Pcl1,2-like subfamily, involved in entry into the mitotic cell cycle and regulation of morphogenesis, localizes to sites of polarized cell growth"	Verified	chr14:87897-88736	87897-88736	98.7%	342.62	353.47	285.92	196.64	65.15	16.89	348.04	241.28	41.02	1.28	0.98	0.17	-2.56	-2.47	Matched[4754]
YNL288W	CAF40	"Evolutionarily conserved subunit of the CCR4-NOT complex involved in controlling mRNA initiation, elongation and degradation; binds Cdc39p"	Verified	chr14:90303-91424	90303-91424	98.8%	177.66	183.08	202.01	175.86	230.87	176.76	180.37	188.94	203.82	0.67	0.77	0.84	0.11	0.73	Matched[4756]
YNL287W	SEC21	"Gamma subunit of coatomer, a heptameric protein complex that together with Arf1p forms the COPI coat; involved in ER to Golgi transport of selective cargo"	Verified	chr14:91994-94801	91994-94801	99.1%	591.78	554.39	576.68	578.83	460.55	511.60	573.08	577.75	486.08	2.12	2.35	2.01	-0.25	0.43	Frag>80[4757,4758]
YNL286W	CUS2	"Protein that binds to U2 snRNA and Prp11p, may be involved in U2 snRNA folding; contains two RNA recognition motifs (RRMs)"	Verified	chr14:95223-96080	95223-96080	98.4%	139.77	136.22	112.53	127.92	226.24	86.47	137.99	120.23	156.35	0.51	0.49	0.65	0.38	-0.06	Matched[4759]
YNL285W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr14:96173-96544	96173-96544	60.0%	0.00	13.44	0.00	0.00	0.00	4.48	6.72	0.00	2.24	0.02	0.00	0.01	Inf	0.43	
YNL284C	MRPL10	Mitochondrial ribosomal protein of the large subunit; appears as two protein spots (YmL10 and YmL18) on two-dimensional SDS gels	Verified	chr14:103134-104102	103134-104102	99.2%	302.85	291.40	350.72	274.75	351.76	215.43	297.13	312.74	283.60	1.10	1.27	1.18	-0.14	-0.06	Frag>80[4760,4761]
YNL283C	WSC2	Partially redundant sensor-transducer of the stress-activated PKC1-MPK1 signaling pathway involved in maintenance of cell wall integrity and recovery from heat shock; secretory pathway Wsc2p is required for the arrest of secretion response	Verified	chr14:105184-106695	105184-106695	98.2%	291.07	294.44	330.15	264.12	201.46	146.21	292.76	297.14	173.83	1.08	1.21	0.72	-0.77	-0.31	Frag>80[4762,4763]
YNL282W	POP3	"Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends"	Verified	chr14:107687-108274	107687-108274	98.6%	77.63	87.98	55.20	72.45	24.15	39.68	82.80	63.83	31.91	0.31	0.26	0.13	-1.00	-1.14	Matched[4764]
YNL281W	HCH1	Heat shock protein regulator that binds to Hsp90p and may stimulate ATPase activity; originally identified as a high-copy number suppressor of a HSP90 loss-of-function mutation; GFP-fusion protein localizes to the cytoplasm and nucleus	Verified	chr14:108467-108928	108467-108928	98.4%	521.31	490.51	464.12	354.14	5734.40	3673.36	505.91	409.13	4703.88	1.87	1.66	19.49	3.52	2.54	Matched[4765]
YNL280C	ERG24	"C-14 sterol reductase, acts in ergosterol biosynthesis; mutants accumulate the abnormal sterol ignosterol (ergosta-8,14 dienol), and are viable under anaerobic growth conditions but inviable on rich medium under aerobic conditions"	Verified	chr14:109095-110411	109095-110411	99.0%	427.05	499.12	360.35	318.95	180.17	128.04	463.09	339.65	154.11	1.71	1.38	0.64	-1.14	-0.36	Matched[4766]
YNL279W	PRM1	Pheromone-regulated multispanning membrane protein involved in membrane fusion during mating; predicted to have 5 transmembrane segments and a coiled coil domain; localizes to the shmoo tip; regulated by Ste12p	Verified	chr14:110917-112902	110917-112902	98.7%	33.65	36.71	45.89	26.01	32.12	14.28	35.18	35.95	23.20	0.13	0.15	0.10	-0.63	-2.34	Matched[4767]
YNL278W	CAF120	"Part of the evolutionarily-conserved CCR4-NOT transcriptional regulatory complex involved in controlling mRNA initiation, elongation, and degradation"	Verified	chr14:113271-116453	113271-116453	98.7%	58.26	36.61	45.20	34.38	30.56	29.92	47.43	39.79	30.24	0.18	0.16	0.13	-0.40	0.43	Matched[4768]
YNL277W-A		Putative protein of unknown function	Uncharacterized	chr14:116679-116867	116679-116867	98.9%	5.35	0.00	5.35	5.35	21.40	5.35	2.67	5.35	13.37	0.01	0.02	0.06	1.32	NaN	Covered/w/another[4768]
YNL277W	MET2	"L-homoserine-O-acetyltransferase, catalyzes the conversion of homoserine to O-acetyl homoserine which is the first step of the methionine biosynthetic pathway"	Verified	chr14:117349-118809	117349-118809	98.5%	57.67	111.17	68.09	50.03	68.09	51.42	84.42	59.06	59.76	0.31	0.24	0.25	0.02	0.20	Covered/w/another[4769]
YNL276C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene MET2/YNL277W"	Dubious	chr14:118431-118826	118431-118826	98.6%	28.18	71.72	56.35	28.18	84.53	56.35	49.95	42.26	70.44	0.18	0.17	0.29	0.74	0.19	Covered/w/another[4769]
YNL275W	BOR1	"Boron efflux transporter of the plasma membrane; binds HCO3-, I-, Br-, NO3- and Cl-; has similarity to the characterized boron efflux transporter A. thaliana BOR1"	Verified	chr14:119268-120998	119268-120998	98.9%	51.39	48.47	63.65	46.13	40.29	25.69	49.93	54.89	32.99	0.18	0.22	0.14	-0.73	0.12	Covered/w/another[4769]
YNL274C	GOR1	"Glyoxylate reductase; null mutation results in increased biomass after diauxic shift; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr14:121118-122170	121118-122170	99.1%	83.38	135.13	145.67	144.71	1834.29	1403.99	109.25	145.19	1619.14	0.40	0.59	6.71	3.48	3.08	Matched[4770]
YNL273W	TOF1	"Subunit of a replication-pausing checkpoint complex (Tof1p-Mrc1p-Csm3p) that acts at the stalled replication fork to promote sister chromatid cohesion after DNA damage, facilitating gap repair of damaged DNA; interacts with the MCM helicase"	Verified	chr14:122883-126599	122883-126599	98.8%	75.16	64.54	64.81	51.47	23.69	23.42	69.85	58.14	23.55	0.26	0.24	0.10	-1.30	-0.78	Frag<80[4771]
YNL272C	SEC2	"Guanyl-nucleotide exchange factor for the small G-protein Sec4p, located on cytoplasmic vesicles; essential for post-Golgi vesicle transport"	Verified	chr14:126805-129084	126805-129084	99.2%	148.07	144.54	148.96	135.25	127.74	85.31	146.30	142.10	106.52	0.54	0.58	0.44	-0.42	-0.55	Matched[4772]
YNL271C	BNI1	"Formin, nucleates the formation of linear actin filaments, involved in cell processes such as budding and mitotic spindle orientation which require the formation of polarized actin cables, functionally redundant with BNR1"	Verified	chr14:129523-135384	129523-135384	99.1%	204.53	220.37	173.37	170.27	108.46	201.77	212.45	171.82	155.12	0.78	0.70	0.64	-0.15	0.58	Matched[4773]
YNL270C	ALP1	Arginine transporter; expression is normally very low and it is unclear what conditions would induce significant expression	Verified	chr14:135941-137662	135941-137662	94.6%	7.37	4.91	8.59	3.68	13.51	12.89	6.14	6.14	13.20	0.02	0.02	0.05	1.10	-0.18	Overlap[4774]
YNL269W	BSC4	"Protein of unknown function, ORF exhibits genomic organization compatible with a translational readthrough-dependent mode of expression; readthrough is increased upon depletion of Sup35p"	Verified	chr14:137700-138095	137700-138095	99.1%	2.55	2.55	12.74	7.65	22.94	15.29	2.55	10.20	19.12	0.01	0.04	0.08	0.91	1.74	Matched[4774]
YNL268W	LYP1	"Lysine permease; one of three amino acid permeases (Alp1p, Can1p, Lyp1p) responsible for uptake of cationic amino acids"	Verified	chr14:138551-140386	138551-140386	95.3%	601.60	582.75	505.05	439.34	318.80	269.09	592.17	472.20	293.94	2.19	1.92	1.22	-0.68	-0.34	Matched[4775]
YNL267W	PIK1	"Phosphatidylinositol 4-kinase; catalyzes first step in the biosynthesis of phosphatidylinositol-4,5-biphosphate; may control cytokineses through the actin cytoskeleton"	Verified	chr14:140879-144079	140879-144079	98.7%	161.69	177.51	155.68	158.84	125.93	125.93	169.60	157.26	125.93	0.63	0.64	0.52	-0.32	0.08	Frag<80[4776]
YNL266W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF IST1/YNL265C"	Dubious	chr14:144246-144665	144246-144665	99.3%	261.29	294.85	316.42	345.19	491.41	337.99	278.07	330.80	414.70	1.03	1.34	1.72	0.33	-0.04	Covered/w/another[4777]
YNL265C	IST1	"Putative translation initiation factor, as suggested by computational analysis of large-scale protein-protein interaction data"	Verified	chr14:144281-145282	144281-145150,145256-145282	99.4%	203.02	229.94	235.55	268.07	367.90	277.05	216.48	251.81	322.48	0.80	1.02	1.34	0.36	0.56	Covered/w/another[4777]
YNL264C	PDR17	"Phosphatidylinositol transfer protein (PITP), downregulates Plb1p-mediated turnover of phosphatidylcholine, found in the cytosol and microsomes, homologous to Pdr16p, deletion affects phospholipid composition"	Verified	chr14:145564-146616	145564-146616	99.1%	242.44	288.44	202.20	194.53	264.48	210.82	265.44	198.36	237.65	0.98	0.81	0.98	0.26	0.81	Covered/w/another[4777]
YNL263C	YIF1	"Integral membrane protein required for the fusion of ER-derived COPII transport vesicles with the Golgi; interacts with Yip1p and Yos1p; localizes to the Golgi, the ER, and COPII vesicles"	Verified	chr14:146897-147841	146897-147841	98.7%	276.49	336.50	323.64	275.42	317.21	251.84	306.50	299.53	284.53	1.13	1.22	1.18	-0.07	0.19	Frag>80[4778,4779]
YNL262W	POL2	"Catalytic subunit of DNA polymerase (II) epsilon, one of the major chromosomal DNA replication polymerases characterized by processivity and proofreading exonuclease activity; also involved in DNA synthesis during DNA repair"	Verified	chr14:148213-154881	148213-154881	98.8%	126.61	109.00	102.17	101.11	35.68	46.91	117.81	101.64	41.29	0.43	0.41	0.17	-1.30	-0.66	Frag<80[4780]
YNL261W	ORC5	"Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing"	Verified	chr14:155101-156540	155101-156540	99.0%	175.99	133.92	140.93	106.58	89.05	58.90	154.96	123.75	73.97	0.57	0.50	0.31	-0.74	-0.30	Covered/w/another[4781]
YNL260C		Putative protein of unknown function with similarity to a human protein overexpressed in oral cancers; localizes to the nucleus and cytoplasm; YNL260C is an essential gene	Uncharacterized	chr14:156860-157456	156860-157456	99.5%	79.10	92.57	100.98	67.32	149.79	106.03	85.83	84.15	127.91	0.32	0.34	0.53	0.60	0.50	Covered/w/another[4781]
YNL259C	ATX1	"Cytosolic copper metallochaperone that transports copper to the secretory vesicle copper transporter Ccc2p for eventual insertion into Fet3p, which is a multicopper oxidase required for high-affinity iron uptake"	Verified	chr14:157645-157866	157645-157866	99.3%	512.47	462.59	503.40	380.95	721.09	349.21	487.53	442.18	535.15	1.80	1.79	2.22	0.28	-1.01	Matched[4782]
YNL258C	DSL1	"Endoplasmic reticulum (ER)-localized peripheral membrane protein required for Golgi-to-ER retrograde traffic; component of the ER target site that interacts with coatomer, the major component of the COPI vesicle protein coat"	Verified	chr14:158110-160374	158110-160374	99.3%	193.44	200.55	167.20	168.53	144.08	97.39	196.99	167.87	120.73	0.73	0.68	0.50	-0.48	-0.29	Matched[4783]
YNL257C	SIP3	"Protein that activates transcription through interaction with DNA-bound Snf1p, C-terminal region has a putative leucine zipper motif; potential Cdc28p substrate"	Verified	chr14:160632-164321	160632-164321	99.2%	131.35	127.80	116.06	113.33	104.86	108.69	129.58	114.69	106.77	0.48	0.47	0.44	-0.10	0.09	Matched[4784]
YNL256W	FOL1	"Multifunctional enzyme of the folic acid biosynthesis pathway, has dihydropteroate synthetase, dihydro-6-hydroxymethylpterin pyrophosphokinase, and dihydroneopterin aldolase activities"	Verified	chr14:164624-167098	164624-167098	98.8%	143.15	83.03	102.25	79.35	26.99	20.04	113.09	90.80	23.52	0.42	0.37	0.10	-1.95	-1.63	Matched[4785]
YNL255C	GIS2	"Protein with seven cysteine-rich CCHC zinc-finger motifs, similar to human CNBP, proposed to be involved in the RAS/cAMP signaling pathway"	Verified	chr14:167330-167791	167330-167791	99.3%	2448.85	1650.74	2019.26	1757.59	586.59	488.46	2049.79	1888.42	537.53	7.57	7.67	2.23	-1.81	-1.97	Matched[4786]
YNL254C		Hypothetical protein	Uncharacterized	chr14:168044-169249	168044-169249	99.0%	58.60	62.79	41.86	30.97	8.37	9.21	60.69	36.42	8.79	0.22	0.15	0.04	-2.05	-1.47	Frag<80[4787]
YNL253W	TEX1	"Protein involved in mRNA export, component of the transcription export (TREX) complex"	Verified	chr14:170019-171287	170019-171287	98.9%	102.78	69.31	83.65	68.52	55.77	31.87	86.04	76.09	43.82	0.32	0.31	0.18	-0.80	-0.49	Matched[4788]
YNL252C	MRPL17	Mitochondrial ribosomal protein of the large subunit	Verified	chr14:171442-172287	171442-172287	99.2%	264.54	266.92	320.54	289.56	358.67	253.81	265.73	305.05	306.24	0.98	1.24	1.27	0.01	0.09	Matched[4789]
YNL251C	NRD1	"RNA-binding protein that interacts with the C-terminal domain of the RNA polymerase II large subunit (Rpo21p), required for transcription termination and 3' end maturation of nonpolyadenylated RNAs"	Verified	chr14:172589-174316	172589-174316	98.8%	246.65	198.02	259.54	113.66	60.34	65.62	222.34	186.60	62.98	0.82	0.76	0.26	-1.57	-0.54	Matched[4790]
YNL250W	RAD50	"Subunit of MRX complex, with Mre11p and Xrs2p, involved in processing double-strand DNA breaks in vegetative cells, initiation of meiotic DSBs, telomere maintenance, and nonhomologous end joining"	Verified	chr14:175411-179349	175411-179349	98.7%	48.33	42.93	40.11	38.56	50.90	44.48	45.63	39.33	47.69	0.17	0.16	0.20	0.28	0.65	Covered/w/another[4791]
YNL249C	MPA43	"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr14:179395-181023	179395-181023	99.3%	72.35	71.11	53.18	40.81	54.42	26.59	71.73	47.00	40.50	0.26	0.19	0.17	-0.21	-0.96	Covered/w/another[4791]
YNL248C	RPA49	RNA polymerase I subunit A49	Verified	chr14:181362-182609	181362-182609	99.0%	502.82	280.96	302.01	259.10	28.34	4.05	391.89	280.56	16.19	1.45	1.14	0.07	-4.11	-4.59	Covered/w/another[4791]
YNL247W		"Essential protein of unknown function; may interact with ribosomes, based on co-purification experiments"	Verified	chr14:182876-185179	182876-185179	98.8%	587.21	471.26	550.75	552.95	141.86	157.67	529.23	551.85	149.77	1.95	2.24	0.62	-1.88	-0.57	Matched[4792]
YNL246W	VPS75	NAP family histone chaperone; binds to histone H3-H4 tetramers and to histone acetyltransferase RTT109; possesses nucleosome assembly activity in vitro; proposed role in vacuolar protein sorting	Verified	chr14:185461-186350	185461-185492,185588-186350	98.0%	359.30	332.35	356.73	293.86	341.34	237.40	345.83	325.30	289.37	1.28	1.32	1.20	-0.17	-0.05	Matched[4793]
YNL245C	CWC25	"Component of a complex containing Cef1p, involved in pre-mRNA splicing; has similarity to S. pombe Cwf25p"	Verified	chr14:186347-186886	186347-186886	99.3%	227.51	238.69	195.80	160.37	208.86	130.54	233.10	178.09	169.70	0.86	0.72	0.70	-0.07	-0.04	Frag<80[4794]
YNL244C	SUI1	Translation initiation factor eIF1; component of a complex involved in recognition of the initiator codon; modulates translation accuracy at the initiation phase	Verified	chr14:187171-187497	187171-187497	99.3%	3132.44	2704.31	2849.08	3000.00	2189.94	1549.28	2918.38	2924.54	1869.61	10.77	11.87	7.75	-0.65	-1.01	Matched[4795]
YNL243W	SLA2	Transmembrane actin-binding protein involved in membrane cytoskeleton assembly and cell polarization; adaptor protein that links actin to clathrin and endocytosis; present in the actin cortical patch of the emerging bud tip; dimer in vivo	Verified	chr14:188052-190958	188052-190958	98.5%	301.09	323.79	350.69	315.76	332.52	342.30	312.44	333.22	337.41	1.15	1.35	1.40	0.02	0.62	Frag>80[4796,4797]
YNL242W	ATG2	Peripheral membrane protein required for the formation of cytosolic sequestering vesicles involved in vacuolar import through both the Cvt pathway and autophagy; interacts with Atg9p and is necessary for its trafficking	Verified	chr14:191325-196103	191325-196103	98.9%	31.11	45.08	41.69	45.93	58.63	90.59	38.10	43.81	74.61	0.14	0.18	0.31	0.77	1.01	Matched[4798]
YNL241C	ZWF1	"Glucose-6-phosphate dehydrogenase (G6PD), catalyzes the first step of the pentose phosphate pathway; involved in adapting to oxidatve stress; homolog of the human G6PD which is deficient in patients with hemolytic anemia"	Verified	chr14:196427-197944	196427-197944	98.7%	433.17	403.80	537.96	501.92	1079.93	770.23	418.49	519.94	925.08	1.54	2.11	3.83	0.83	1.05	Matched[4799]
YNL240C	NAR1	"Nuclear architecture related protein; component of the cytosolic iron-sulfur (FeS) protein assembly machinery, required for maturation of cytosolic and nuclear FeS proteins; homologous to human Narf"	Verified	chr14:198503-199978	198503-199978	98.6%	89.34	91.40	74.91	52.23	61.85	41.92	90.37	63.57	51.88	0.33	0.26	0.21	-0.29	-0.11	Matched[4800]
YNL239W	LAP3	Cysteine aminopeptidase with homocysteine-thiolactonase activity; protects cells against homocysteine toxicity; has bleomycin hydrolase activity in vitro; transcription is regulated by galactose via Gal4p; orthologous to human BLMH	Verified	chr14:200570-201934	200570-201934	98.9%	427.43	568.18	465.21	445.95	585.96	628.19	497.81	455.58	607.07	1.84	1.85	2.52	0.41	1.05	Matched[4802]
YNL238W	KEX2	"Subtilisin-like protease (proprotein convertase), a calcium-dependent serine protease involved in the activation of proproteins of the secretory pathway"	Verified	chr14:202429-204873	202429-204873	98.7%	213.50	213.92	204.80	165.83	162.93	157.95	213.71	185.31	160.44	0.79	0.75	0.66	-0.21	0.42	Matched[4803]
YNL237W	YTP1	"Probable type-III integral membrane protein of unknown function, has regions of similarity to mitochondrial electron transport proteins"	Verified	chr14:205189-206568	205189-206568	98.6%	76.44	85.26	81.59	64.68	149.21	124.22	80.85	73.13	136.71	0.30	0.30	0.57	0.90	1.55	Matched[4804]
YNL236W	SIN4	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; contributes to both postive and negative transcriptional regulation; dispensible for basal transcription	Verified	chr14:206931-209855	206931-209855	99.0%	104.59	100.45	104.25	84.23	74.91	79.05	102.52	94.24	76.98	0.38	0.38	0.32	-0.29	-0.01	Matched[4805]
YNL235C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF SIN4/YNL236W, a subunit of the mediator complex"	Dubious	chr14:209549-209980	209549-209980	98.9%	126.41	140.46	119.39	95.98	105.35	60.87	133.44	107.69	83.11	0.49	0.44	0.34	-0.37	-0.21	Covered/w/another[4805]
YNL234W		Similar to globins and has a functional heme-binding domain; involved in glucose signaling or metabolism; regulated by Rgt1p	Uncharacterized	chr14:210234-211514	210234-211514	98.9%	46.55	32.35	28.40	27.61	40.24	14.20	39.45	28.01	27.22	0.15	0.11	0.11	-0.04	0.67	
YNL233W	BNI4	"Targeting subunit for Glc7p protein phosphatase, localized to the bud neck, required for localization of chitin synthase III to the bud neck via interaction with the chitin synthase III regulatory subunit Skt5p"	Verified	chr14:211923-214601	211923-214601	98.7%	117.61	99.08	97.95	94.92	67.31	61.26	108.35	96.43	64.29	0.40	0.39	0.27	-0.58	0.18	Covered/w/another[4806]
YNL232W	CSL4	"Subunit of the exosome, which is an essential complex present in both nucleus and cytoplasm that mediates RNA processing and degradation"	Verified	chr14:214924-215802	214924-215802	98.2%	182.99	159.83	141.30	118.14	52.12	41.69	171.41	129.72	46.91	0.63	0.53	0.19	-1.47	-0.60	Covered/w/another[4806]
YNL231C	PDR16	"Phosphatidylinositol transfer protein (PITP) controlled by the multiple drug resistance regulator Pdr1p, localizes to lipid particles and microsomes, controls levels of various lipids, may regulate lipid synthesis, homologous to Pdr17p"	Verified	chr14:215988-217043	215988-217043	99.2%	640.42	523.98	582.20	498.21	490.58	252.92	582.20	540.21	371.75	2.15	2.19	1.54	-0.54	-0.59	Matched[4807]
YNL230C	ELA1	"Elongin A, F-box protein that forms a heterodimer with Elc1p and is required for ubiquitin-dependent degredation of the RNA Polymerase II subunit RPO21; subunit of the Elongin-Cullin-Socs (ECS) ligase complex"	Verified	chr14:217524-218663	217524-218663	99.0%	81.54	86.86	61.15	51.41	85.97	49.63	84.20	56.28	67.80	0.31	0.23	0.28	0.27	0.68	Matched[4808]
YNL229C	URE2	Nitrogen catabolite repression transcriptional regulator that acts by inhibition of GLN3 transcription in good nitrogen source; altered form of Ure2p creates [URE3] prion	Verified	chr14:219138-220202	219138-220202	99.2%	309.38	300.86	262.07	245.99	236.53	168.41	305.12	254.03	202.47	1.13	1.03	0.84	-0.33	-0.20	Frag>80[4809,4810,4811]
YNL228W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps ORF YNL227C/JJJ1"	Dubious	chr14:220646-221422	220646-221422	99.4%	179.97	130.77	117.82	89.34	37.55	53.09	155.37	103.58	45.32	0.57	0.42	0.19	-1.19	-0.45	Frag<80[4811]
YNL226W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene JJJ1/YNL227C"	Dubious	chr14:222240-222650	222240-222650	99.2%	39.22	29.42	22.06	36.77	2.45	9.81	34.32	29.42	6.13	0.13	0.12	0.03	-2.26	-0.32	Overlap[4812,4813]
YNL227C	JJJ1	"Co-chaperone that stimulates the ATPase activity of Ssa1p, required for a late step of ribosome biogenesis; associated with the cytosolic large ribosomal subunit; contains a J-domain; mutation causes defects in fluid-phase endocytosis"	Verified	chr14:220660-222432	220660-222432	99.4%	136.71	107.78	93.03	72.04	23.26	31.77	122.24	82.54	27.51	0.45	0.34	0.11	-1.58	-1.85	Frag>80[4811,4812]
YNL225C	CNM67	Component of the spindle pole body outer plaque; required for spindle orientation and mitotic nuclear migration	Verified	chr14:222725-224470	222725-224470	99.3%	109.58	96.89	92.28	78.44	107.27	66.32	103.23	85.36	86.80	0.38	0.35	0.36	0.02	0.16	Matched[4813]
YNL224C	SQS1	Protein of unknown function; overexpression antagonizes the suppression of splicing defects by spp382 mutants; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus	Verified	chr14:224797-227100	224797-227100	99.3%	114.98	108.42	100.99	108.86	112.80	98.81	111.70	104.93	105.80	0.41	0.43	0.44	0.01	0.18	Matched[4814]
YNL223W	ATG4	Cysteine protease required for autophagy; cleaves Atg8p to a form required for autophagosome and Cvt vesicle generation; mediates attachment of autophagosomes to microtubules through interactions with Tub1p and Tub2p	Verified	chr14:227371-228855	227371-228855	98.5%	60.84	82.03	49.22	54.00	99.80	71.09	71.43	51.61	85.45	0.26	0.21	0.35	0.73	0.33	Covered/w/another[4815]
YNL222W	SSU72	Transcription/RNA-processing factor that associates with TFIIB and cleavage/polyadenylation factor Pta1p; exhibits phosphatase activity on serine-5 of the RNA polymerase II C-terminal domain; affects start site selection in vivo	Verified	chr14:229095-229715	229095-229715	98.9%	118.84	105.81	128.60	97.67	149.77	78.14	112.32	113.14	113.95	0.41	0.46	0.47	0.01	-0.32	Covered/w/another[4815]
YNL221C	POP1	"Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends; binds to the RPR1 RNA subunit in RNase P"	Verified	chr14:231069-233696	231069-233696	99.2%	159.65	161.95	117.82	89.04	40.68	31.09	160.80	103.43	35.88	0.59	0.42	0.15	-1.53	-0.74	Matched[4817]
YNL220W	ADE12	"Adenylosuccinate synthase, catalyzes the first step in synthesis of adenosine monophosphate from inosine 5'monophosphate during purine nucleotide biosynthesis; exhibits binding to single-stranded autonomously replicating (ARS) core sequence"	Verified	chr14:234414-235715	234414-235715	98.7%	1945.92	1899.24	2024.51	1770.86	553.20	334.57	1922.58	1897.69	443.88	7.10	7.70	1.84	-2.10	-1.63	Matched[4818]
YNL219C	ALG9	"Mannosyltransferase, involved in N-linked glycosylation; catalyzes the transfer of mannose from Dol-P-Man to lipid-linked oligosaccharides; mutation of the human ortholog causes type 1 congenital disorders of glycosylation"	Verified	chr14:235997-237664	235997-237664	99.0%	293.01	306.33	271.82	274.85	197.36	180.41	299.67	273.33	188.88	1.11	1.11	0.78	-0.53	0.13	Frag>80[4819,4820]
YNL218W	MGS1	Protein with DNA-dependent ATPase and ssDNA annealing activities involved in maintenance of genome; interacts functionally with DNA polymerase delta; homolog of human Werner helicase interacting protein (WHIP)	Verified	chr14:238239-240002	238239-240002	98.5%	74.24	54.10	56.98	37.98	36.83	22.45	64.17	47.48	29.64	0.24	0.19	0.12	-0.68	-0.02	Matched[4821]
YNL217W		Hypothetical protein	Uncharacterized	chr14:240332-241312	240332-241312	98.7%	585.44	549.30	478.06	395.46	169.33	71.24	567.37	436.76	120.29	2.09	1.77	0.50	-1.86	-2.32	Matched[4822]
YNL216W	RAP1	"DNA-binding protein involved in either activation or repression of transcription, depending on binding site context; also binds telomere sequences and plays a role in telomeric position effect (silencing) and telomere structure"	Verified	chr14:241690-244173	241690-244173	98.7%	160.78	176.28	159.55	135.07	79.57	95.49	168.53	147.31	87.53	0.62	0.60	0.36	-0.75	0.15	Matched[4823]
YNL215W	IES2	Protein that associates with the INO80 chromatin remodeling complex under low-salt conditions	Verified	chr14:244469-245431	244469-245431	97.8%	190.02	190.02	203.82	161.36	323.78	195.33	190.02	182.59	259.55	0.70	0.74	1.08	0.51	0.40	Frag>80[4824,4825]
YNL214W	PEX17	Peroxisomal membrane peroxin and subunit of the docking complex that facilitates the import of peroxisomal matrix proteins; required for peroxisome biogenesis	Verified	chr14:245618-246217	245618-246217	98.8%	75.93	75.93	84.36	67.49	182.23	87.74	75.93	75.93	134.98	0.28	0.31	0.56	0.83	0.60	Covered/w/another[4826]
YNL213C		"Protein of unknown function; null mutant lacks mitochondrial DNA and cannot grow on glycerol; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr14:246461-247105	246461-247105	99.2%	186.02	161.01	154.76	143.82	165.70	96.92	173.52	149.29	131.31	0.64	0.61	0.54	-0.19	-0.12	Covered/w/another[4826]
YNL212W	VID27	"Cytoplasmic protein of unknown function; possibly involved in vacuolar protein degradation; not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase); null mutants exhibit normal growth"	Verified	chr14:247462-249810	247462-249810	98.7%	159.64	125.56	154.46	126.85	169.13	103.12	142.60	140.66	136.13	0.53	0.57	0.56	-0.05	0.15	Frag>80[4827,4828]
YNL211C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to mitochondria; YNL211C is not an essential gene	Uncharacterized	chr14:250056-250316	250056-250316	99.2%	104.26	177.63	73.37	127.43	193.08	73.37	140.95	100.40	133.23	0.52	0.41	0.55	0.41	-0.07	Matched[4828]
YNL210W	MER1	Protein with RNA-binding motifs required for meiosis-specific mRNA splicing; required for chromosome pairing and meiotic recombination	Verified	chr14:250932-251744	250932-251744	98.9%	26.12	39.81	21.15	6.22	11.20	7.46	32.97	13.68	9.33	0.12	0.06	0.04	-0.55	-0.15	
YNL209W	SSB2	"Cytoplasmic ATPase that is a ribosome-associated molecular chaperone, functions with J-protein partner Zuo1p; may be involved in the folding of newly-synthesized polypeptide chains; member of the HSP70 family; homolog of SSB1"	Verified	chr14:252060-253901	252060-253901	23.2%	5389.95	3728.09	4700.43	4485.39	558.63	628.75	4559.02	4592.91	593.69	16.83	18.64	2.46	-2.95	-3.32	Frag<80[4829,4830,4831]
YNL208W		"Protein of unknown function; may interact with ribosomes, based on co-purification experiments; authentic, non-tagged protein is detected in purified mitochondria in high-throughput studies; potential orthologs found in other fungi"	Verified	chr14:254419-255018	254419-255018	95.2%	2172.27	2487.35	2667.64	2266.79	5358.03	3553.35	2329.81	2467.22	4455.69	8.60	10.01	18.46	0.85	0.48	Frag>80[4832,4833]
YNL207W	RIO2	Essential serine kinase involved in the processing of the 20S pre-rRNA into mature 18S rRNA; has similarity to Rio1p	Verified	chr14:255354-256631	255354-256631	98.6%	179.34	123.79	100.78	97.61	27.77	15.08	151.57	99.19	21.43	0.56	0.40	0.09	-2.21	-2.19	Matched[4834]
YNL206C	RTT106	Protein with a role in regulation of Ty1 transposition	Verified	chr14:256789-258156	256789-258156	99.3%	240.83	225.37	201.80	198.12	134.04	85.43	233.10	199.96	109.74	0.86	0.81	0.45	-0.87	-0.83	Matched[4835]
YNL205C		"Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr14:258156-258578	258156-258578	99.0%	26.27	28.66	4.78	7.16	21.49	4.78	27.47	5.97	13.14	0.10	0.02	0.05	1.14	0.12	Overlap[4835]
YNL204C	SPS18	"Protein of unknown function, contains a putative zinc-binding domain; expressed during sporulation"	Verified	chr14:258376-259278	258376-259278	99.3%	26.76	31.22	25.64	12.26	24.53	8.92	28.99	18.95	16.72	0.11	0.08	0.07	-0.18	0.34	Overlap[4836]
YNL202W	SPS19	"Peroxisomal 2,4-dienoyl-CoA reductase, auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate"	Verified	chr14:259579-260457	259579-260457	98.4%	43.95	27.76	40.48	40.48	87.91	38.17	35.86	40.48	63.04	0.13	0.16	0.26	0.64	1.10	Matched[4836]
YNL203C		Dubious open reading frame unlikely to encode a functional protein; based on available experimental and comparative sequence data	Dubious	chr14:259440-260051	259440-260051	98.4%	41.50	14.94	43.16	38.18	79.67	29.88	28.22	40.67	54.78	0.10	0.17	0.23	0.43	0.58	Matched[4836]
YNL201C	PSY2	Putative subunit of an evolutionarily conserved protein phosphatase complex containing the catalytic subunit Pph3p and the regulatory subunit Psy4p; required for cisplatin and oxaliplatin resistance; localizes to nucleus	Verified	chr14:260628-263204	260628-263204	99.3%	121.14	113.32	96.13	85.58	67.21	52.75	117.23	90.85	59.98	0.43	0.37	0.25	-0.60	-0.34	Matched[4837]
YNL200C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr14:263714-264454	263714-264454	98.8%	241.82	535.55	356.58	347.01	1482.32	1185.86	388.68	351.80	1334.09	1.43	1.43	5.53	1.92	1.95	Frag>80[4838,4839,4840]
YNL199C	GCR2	Transcriptional activator of genes involved in glycolysis; interacts and functions with the DNA-binding protein Gcr1p	Verified	chr14:264927-266531	264927-266531	99.2%	158.83	160.72	137.49	133.09	147.53	130.58	159.77	135.29	139.06	0.59	0.55	0.58	0.04	0.23	Frag>80[4840,4841]
YNL198C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr14:266515-266817	266515-266817	98.8%	53.42	13.36	53.42	46.74	36.73	23.37	33.39	50.08	30.05	0.12	0.20	0.12	-0.74	1.00	Overlap[4841]
YNL197C	WHI3	RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci; cytoplasmic retention factor for Cdc28p and associated cyclins; regulates cell fate and dose-dependently regulates the critical cell size required for passage through Start	Verified	chr14:267609-269594	267609-269594	98.7%	319.76	269.78	294.26	263.66	177.48	221.33	294.77	278.96	199.41	1.09	1.13	0.83	-0.48	0.22	Frag>80[4842,4843]
YNL196C	SLZ1	Sporulation-specific protein with a leucine zipper motif	Uncharacterized	chr14:270276-271172	270276-271172	99.3%	23.58	30.31	33.68	23.58	69.61	42.66	26.94	28.63	56.14	0.10	0.12	0.23	0.97	2.00	Frag>80[4844,4845]
YNL195C		"Putative protein of unknown function; shares a promoter with YNL194C; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr14:271524-272309	271524-272309	98.6%	19.36	33.55	15.49	18.07	664.62	363.93	26.46	16.78	514.28	0.10	0.07	2.13	4.94	3.65	Covered/w/another[4846]
YNL194C		Integral membrane protein localized to eisosomes; sporulation and plasma membrane sphingolipid content are altered in mutants; has homologs SUR7 and FMP45; GFP-fusion protein is induced in response to the DNA-damaging agent MMS	Verified	chr14:272711-273616	272711-273616	98.5%	23.52	24.64	21.28	16.80	1525.62	1196.30	24.08	19.04	1360.96	0.09	0.08	5.64	6.16	5.02	Covered/w/another[4846]
YNL193W		Putative protein of unknown function; exhibits a two-hybrid interaction with Yhr151cp in a large-scale analysis	Uncharacterized	chr14:274369-276045	274369-276045	98.9%	91.02	75.34	73.54	72.93	162.74	93.43	83.18	73.24	128.09	0.31	0.30	0.53	0.81	1.00	Matched[4847]
YNL192W	CHS1	"Chitin synthase I, requires activation from zymogenic form in order to catalyze the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for repairing the chitin septum during cytokinesis; transcription activated by mating factor"	Verified	chr14:276503-279898	276503-279898	98.9%	229.19	207.16	194.66	169.36	223.53	177.40	218.18	182.01	200.47	0.81	0.74	0.83	0.14	0.24	Matched[4848]
YNL191W	DUG3	"Probable glutamine amidotransferase, forms a complex with Dug1p and Dug2p to degrade glutathione (GSH) and other peptides containing a gamma-glu-X bond in an alternative pathway to GSH degradation by gamma-glutamyl transpeptidase (Ecm38p)"	Verified	chr14:280433-281506	280433-281506	98.6%	89.71	151.09	69.88	64.21	81.21	71.77	120.40	67.04	76.49	0.44	0.27	0.32	0.19	0.59	Matched[4849]
YNL190W		Cell wall protein of unknown function; proposed role as a hydrophilin induced by osmotic stress; contains a putative GPI-attachment site	Uncharacterized	chr14:282396-283010	282396-283010	61.9%	4459.92	4436.27	3802.89	3461.24	2260.18	1968.46	4448.09	3632.06	2114.32	16.42	14.74	8.76	-0.78	-1.81	Matched[4850]
YNL189W	SRP1	"Karyopherin alpha homolog, forms a dimer with karyopherin beta Kap95p to mediate import of nuclear proteins, binds the nuclear localization signal of the substrate during import; may also play a role in regulation of protein degradation"	Verified	chr14:284261-285889	284261-285889	98.8%	547.36	410.68	522.51	469.70	397.01	321.83	479.02	496.10	359.42	1.77	2.01	1.49	-0.46	0.10	Matched[4852]
YNL188W	KAR1	"Essential protein involved in karyogamy during mating and in spindle pole body duplication during mitosis, localizes to the half-bridge of the spindle pole body, interacts with Spc72p during karyogamy, also interacts with Cdc31p"	Verified	chr14:286309-287610	286309-287610	98.8%	188.93	140.72	140.72	119.73	87.08	45.09	164.83	130.23	66.09	0.61	0.53	0.27	-0.98	-0.72	Frag>80[4853,4854]
YNL187W		Putative protein of unknown function; contains a consensus nuclear export signal (NES) sequence similar to the consensus sequence recognized by Crm1p; may interact with or be fuctionally redundant with Prp40p	Uncharacterized	chr14:287996-289069	287996-289069	98.5%	52.95	86.99	42.55	55.79	72.81	52.01	69.97	49.17	62.41	0.26	0.20	0.26	0.34	0.78	Covered/w/another[4855]
YNL186W	UBP10	Ubiquitin-specific protease that deubiquitinates ubiquitin-protein moieties; may regulate silencing by acting on Sir4p; involved in posttranscriptionally regulating Gap1p and possibly other transporters; primarily located in the nucleus	Verified	chr14:289500-291878	289500-291878	96.9%	320.92	224.64	208.16	135.31	63.32	49.01	272.78	171.74	56.16	1.01	0.70	0.23	-1.61	-1.31	Covered/w/another[4855]
YNL185C	MRPL19	Mitochondrial ribosomal protein of the large subunit	Verified	chr14:292195-292671	292195-292671	99.1%	325.72	289.77	340.53	296.11	365.91	266.50	307.75	318.32	316.21	1.14	1.29	1.31	-0.01	-0.07	Matched[4856]
YNL184C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr14:292559-292885	292559-292885	98.9%	151.51	126.77	157.69	170.06	151.51	129.86	139.14	163.88	140.69	0.51	0.67	0.58	-0.22	-1.14	Frag<80[4856]
YNL183C	NPR1	Protein kinase that stabilizes several plasma membrane amino acid transporters by antagonizing their ubiquitin-mediated degradation	Verified	chr14:293139-295511	293139-295511	98.8%	119.84	123.68	110.04	109.18	145.43	103.64	121.76	109.61	124.54	0.45	0.44	0.52	0.18	0.63	Matched[4857]
YNL182C	IPI3	"Essential component of the Rix1 complex (Rix1p, Ipi1p, Ipi3p) that is required for processing of ITS2 sequences from 35S pre-rRNA; highly conserved and contains WD40 motifs; Rix1 complex associates with Mdn1p in pre-60S ribosomal particles"	Verified	chr14:295962-297629	295962-297629	99.2%	160.18	84.02	98.53	63.47	12.09	4.84	122.10	81.00	8.46	0.45	0.33	0.04	-3.26	-3.07	Matched[4858]
YNL181W		Putative oxidoreductase; required for cell viability	Uncharacterized	chr14:298337-299560	298337-299560	98.5%	293.65	220.66	224.80	192.45	165.08	112.82	257.15	208.63	138.95	0.95	0.85	0.58	-0.59	-0.41	Matched[4859]
YNL180C	RHO5	"Non-essential small GTPase of the Rho/Rac subfamily of Ras-like proteins, likely involved in protein kinase C (Pkc1p)-dependent signal transduction pathway that controls cell integrity"	Verified	chr14:299656-300651	299656-300651	99.2%	363.51	388.83	387.82	349.34	446.54	378.70	376.17	368.58	412.62	1.39	1.50	1.71	0.16	0.46	Matched[4860]
YNL179C		"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; deletion in cyr1 mutant results in loss of stress resistance"	Dubious	chr14:300668-301105	300668-301105	96.1%	144.99	144.99	118.85	111.72	114.09	128.35	144.99	115.28	121.22	0.54	0.47	0.50	0.07	-0.55	Frag<80[4861]
YNL178W	RPS3	"Protein component of the small (40S) ribosomal subunit, has apurinic/apyrimidinic (AP) endonuclease activity; essential for viability; has similarity to E. coli S3 and rat S3 ribosomal proteins"	Verified	chr14:302682-303404	302682-303404	98.5%	13687.82	9905.14	12062.46	9512.13	2749.63	1611.32	11796.48	10787.30	2180.48	43.55	43.79	9.03	-2.31	-2.99	Matched[4863]
YNL177C	MRPL22	Mitochondrial ribosomal protein of the large subunit	Verified	chr14:303688-304617	303688-304617	99.3%	296.74	318.40	310.82	347.64	406.12	239.34	307.57	329.23	322.73	1.14	1.34	1.34	-0.03	-0.51	Frag>80[4864,4865]
YNL176C		"Cell cycle-regulated gene of unknown function, promoter bound by Fkh2p"	Uncharacterized	chr14:305072-306982	305072-306982	98.5%	223.67	216.77	211.99	173.73	174.26	181.17	220.22	192.86	177.72	0.81	0.78	0.74	-0.12	0.36	Matched[4866]
YNL174W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps the verified gene NOP13/YNL175C"	Dubious	chr14:308076-308648	308076-308648	99.2%	346.42	154.75	209.26	218.05	28.14	10.55	250.59	213.66	19.34	0.93	0.87	0.08	-3.47	-0.44	Matched[4867]
YNL175C	NOP13	"Protein of unknown function, localizes to the nucleolus and nucleoplasm; contains an RNA recognition motif (RRM) and has similarity to Nop12p, which is required for processing of pre-18S rRNA"	Verified	chr14:307403-308614	307403-308614	99.2%	398.31	178.78	257.78	202.07	24.11	10.81	288.55	229.92	17.46	1.07	0.93	0.07	-3.72	-3.55	Matched[4867]
YNL173C	MDG1	Plasma membrane protein involved in G-protein mediated pheromone signaling pathway; overproduction suppresses bem1 mutations	Verified	chr14:308959-310059	308959-310059	99.3%	288.21	337.62	512.37	525.18	815.22	654.19	312.91	518.78	734.70	1.16	2.11	3.04	0.50	0.45	Frag>80[4868,4869]
YNL172W	APC1	"Largest subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition"	Verified	chr14:310638-315884	310638-315884	98.9%	38.55	35.47	34.70	32.00	38.75	44.53	37.01	33.35	41.64	0.14	0.14	0.17	0.32	0.49	Frag<80[4870]
YNL170W		Dubious open reading frame unlikely to encode a functional protein; based on available experimental and comparative sequence data	Dubious	chr14:315980-316375	315980-316375	99.4%	210.77	266.64	253.94	266.64	246.32	185.38	238.70	260.29	215.85	0.88	1.06	0.89	-0.27	-0.01	
YNL171C		Dubious open reading frame unlikely to encode a functional protein; based on available experimental and comparative sequence data	Dubious	chr14:315631-315999	315631-315999	98.9%	128.72	112.29	106.81	95.86	134.20	112.29	120.51	101.34	123.25	0.44	0.41	0.51	0.28	0.04	Covered[4870]
YNL169C	PSD1	"Phosphatidylserine decarboxylase of the mitochondrial inner membrane, converts phosphatidylserine to phosphatidylethanolamine"	Verified	chr14:316171-317673	316171-317673	98.9%	219.94	231.37	260.96	275.09	236.08	219.94	225.65	268.03	228.01	0.83	1.09	0.94	-0.23	0.32	Covered/w/another[4871]
YNL168C		"Putative protein of unknown function; GFP-fusion protein is induced in response to the DNA-damaging agent MMS; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr14:318032-318811	318032-318811	98.9%	263.11	247.56	247.56	269.59	336.99	255.33	255.33	258.57	296.16	0.94	1.05	1.23	0.20	0.53	Covered/w/another[4871]
YNL167C	SKO1	"Basic leucine zipper (bZIP) transcription factor of the ATF/CREB family, forms a complex with Tup1p and Ssn6p to both activate and repress transcription; cytosolic and nuclear protein involved in osmotic and oxidative stress responses"	Verified	chr14:319418-321361	319418-321361	98.9%	184.14	178.94	188.82	176.34	231.47	255.40	181.54	182.58	243.44	0.67	0.74	1.01	0.42	0.89	Covered/w/another[4871]
YNL166C	BNI5	"Protein involved in organization of septins at the mother-bud neck, may interact directly with the Cdc11p septin, localizes to bud neck in a septin-dependent manner"	Verified	chr14:322221-323567	322221-323567	99.2%	255.18	211.03	219.26	188.58	136.20	107.76	233.11	203.92	121.98	0.86	0.83	0.51	-0.74	-0.48	Frag>80[4872,4873]
YNL165W		Putative protein of unknown function; YNL165W is not an essential gene	Uncharacterized	chr14:323834-325054	323834-325054	98.8%	82.06	64.65	54.71	41.45	67.97	56.37	73.36	48.08	62.17	0.27	0.20	0.26	0.37	0.82	Covered/w/another[4874]
YNL164C	IBD2	"Component of the BUB2-dependent spindle checkpoint pathway, interacts with Bfa1p and functions upstream of Bub2p and Bfa1p"	Verified	chr14:325267-326322	325267-326322	99.3%	76.32	81.09	51.52	37.21	25.76	13.36	78.71	44.36	19.56	0.29	0.18	0.08	-1.18	-1.88	Covered/w/another[4874]
YNL163C	RIA1	Cytoplasmic GTPase involved in biogenesis of the 60S ribosome; has similarity to translation elongation factor 2 (Eft1p and Eft2p)	Verified	chr14:326743-330075	326743-330075	99.2%	137.02	111.31	105.87	85.60	47.19	43.25	124.17	95.73	45.22	0.46	0.39	0.19	-1.08	-0.47	Matched[4875]
YNL162W-A		"Putative protein of unknown function, identified by homology"	Uncharacterized	chr14:330331-330549	330331-330549	99.3%	55.17	59.77	45.98	9.20	13.79	0.00	57.47	27.59	6.90	0.21	0.11	0.03	-2.00	-3.50	Matched[4876]
YNL162W	RPL42A	"Protein component of the large (60S) ribosomal subunit, identical to Rpl42Bp and has similarity to rat L44 ribosomal protein"	Verified	chr14:331324-332156	331324-331327,331840-332156	29.1%	6513.37	4524.06	5411.76	4449.20	1133.69	951.87	5518.72	4930.48	1042.78	20.37	20.01	4.32	-2.24	-3.20	Frag>80[4877,4878]
YNL161W	CBK1	"Serine/threonine protein kinase that regulates cell morphogenesis pathways; involved in cell wall biosynthesis, apical growth, proper mating projection morphology, bipolar bud site selection in diploid cells, and cell separation"	Verified	chr14:332599-334869	332599-334869	98.3%	153.58	132.99	145.53	120.90	99.40	66.72	143.29	133.21	83.06	0.53	0.54	0.34	-0.68	-0.34	Matched[4879]
YNL160W	YGP1	Cell wall-related secretory glycoprotein; induced by nutrient deprivation-associated growth arrest and upon entry into stationary phase; may be involved in adaptation prior to stationary phase entry; has similarity to Sps100p	Verified	chr14:336547-337611	336547-337611	99.2%	412.67	2360.53	576.41	552.75	4640.61	4368.97	1386.60	564.58	4504.79	5.12	2.29	18.66	3.00	2.82	Matched[4881]
YNL159C	ASI2	Integral inner nuclear membrane protein that acts with Asi1p and Asi3p to ensure the fidelity of SPS-sensor signalling by maintaining the dormant repressed state of gene expression in the absence of inducing signals	Verified	chr14:338480-339349	338480-339349	99.1%	121.76	219.17	111.33	125.24	316.58	200.62	170.47	118.28	258.60	0.63	0.48	1.07	1.13	1.07	Matched[4883]
YNL158W	PGA1	Essential protein required for maturation of Gas1p and Pho8p; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery; has synthetic genetic interations with secretory pathway genes	Verified	chr14:339614-340210	339614-340210	99.0%	126.89	147.20	121.82	113.36	145.51	116.74	137.05	117.59	131.12	0.51	0.48	0.54	0.16	0.71	Matched[4884]
YNL157W		Hypothetical protein	Uncharacterized	chr14:340354-340860	340354-340860	98.7%	401.80	409.80	379.81	327.84	805.60	443.78	405.80	353.82	624.69	1.50	1.44	2.59	0.82	0.66	Matched[4885]
YNL156C	NSG2	"Protein involved in regulation of sterol biosynthesis; specifically stabilizes Hmg2p, one of two HMG-CoA isoenzymes that catalyze the rate-limiting step in sterol biosynthesis; homolog of mammalian INSIG proteins"	Verified	chr14:341071-341970	341071-341970	98.9%	338.04	327.94	417.78	377.35	1007.39	624.43	332.99	397.57	815.91	1.23	1.61	3.38	1.04	1.10	Matched[4886]
YNL155W		"Putative protein of unknown function, contains DHHC domain, also predicted to have thiol-disulfide oxidoreductase active site"	Uncharacterized	chr14:342518-343342	342518-343342	98.7%	433.51	327.89	405.26	361.05	1402.45	768.77	380.70	383.16	1085.61	1.41	1.56	4.50	1.50	0.94	Frag>80[4887,4888]
YNL154C	YCK2	"Palmitoylated, plasma membrane-bound casein kinase I isoform; shares redundant functions with Yck1p in morphogenesis, proper septin assembly, endocytic trafficking; provides an essential function overlapping with that of Yck1p"	Verified	chr14:343638-345278	343638-345278	99.1%	547.34	546.73	539.35	473.54	432.34	332.09	547.03	506.44	382.22	2.02	2.06	1.58	-0.41	-0.09	Covered/w/another[4889]
YNL153C	GIM3	Subunit of the heterohexameric cochaperone prefoldin complex which binds specifically to cytosolic chaperonin and transfers target proteins to it	Verified	chr14:345671-346060	345671-346060	99.2%	511.74	496.23	444.54	467.80	346.33	196.42	503.98	456.17	271.38	1.86	1.85	1.12	-0.75	-1.13	Covered/w/another[4889]
YNL152W		Putative protein of unknown function; cytoplasmically localized protein proposed to function in phospholipid binding; YBL107C is an essential gene	Uncharacterized	chr14:346315-347544	346315-347544	98.8%	108.58	94.60	104.47	85.55	101.18	61.69	101.59	95.01	81.44	0.38	0.39	0.34	-0.22	0.31	Covered/w/another[4890]
YNL151C	RPC31	RNA polymerase III subunit C31; contains HMG-like C-terminal domain	Verified	chr14:347768-348523	347768-348523	99.4%	356.52	234.13	255.42	198.22	37.25	21.28	295.33	226.82	29.27	1.09	0.92	0.12	-2.95	-2.84	Covered/w/another[4890]
YNL150W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; extensive overlap with PGA2/YNL149C, an uncharacterized gene with a proposed role in protein trafficking"	Dubious	chr14:349253-349660	349253-349660	99.4%	589.21	505.39	443.76	387.06	352.54	197.23	547.30	415.41	274.88	2.02	1.69	1.14	-0.60	-0.60	Matched[4891]
YNL149C	PGA2	Essential protein required for maturation of Gas1p and Pho8p; involved in protein trafficking; GFP-fusion protein localizes to the ER and YFP-fusion protein to the nuclear envelope-ER network; null mutants have a cell separation defect	Uncharacterized	chr14:349369-349758	349369-349758	99.5%	659.79	520.62	484.54	402.06	432.99	201.03	590.21	443.30	317.01	2.18	1.80	1.31	-0.48	-1.41	Matched[4891]
YNL148C	ALF1	"Alpha-tubulin folding protein, similar to mammalian cofactor B; Alf1p-GFP localizes to cytoplasmic microtubules; required for the folding of alpha-tubulin and may play an additional role in microtubule maintenance"	Verified	chr14:349909-350673	349909-350673	99.0%	124.12	153.17	117.52	105.63	62.06	30.37	138.64	111.58	46.21	0.51	0.45	0.19	-1.27	-1.14	Matched[4892]
YNL147W	LSM7	"Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA"	Verified	chr14:350942-351385	350942-350959,351056-351385	99.0%	609.28	548.36	562.86	551.26	661.51	310.44	578.82	557.06	485.98	2.14	2.26	2.01	-0.20	-0.52	Matched[4893]
YNL146C-A		Putative protein of unknown function	Uncharacterized	chr14:351388-351582	351388-351582	98.7%	109.07	166.20	83.10	72.71	129.84	72.71	137.63	77.91	101.28	0.51	0.32	0.42	0.38	NaN	Matched[4894]
YNL146W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; YNL146W is not an essential gene	Uncharacterized	chr14:351717-352019	351717-352019	99.4%	63.11	59.78	39.86	46.50	139.50	43.18	61.44	43.18	91.34	0.23	0.18	0.38	1.08	0.54	Matched[4894]
YNL145W	MFA2	"Mating pheromone a-factor, made by a cells; interacts with alpha cells to induce cell cycle arrest and other responses leading to mating; biogenesis involves C-terminal modification, N-terminal proteolysis, and export; also encoded by MFA1"	Verified	chr14:352416-352532	352416-352532	98.8%	7841.33	8923.19	7685.54	6750.81	4465.92	1644.43	8382.26	7218.18	3055.18	30.94	29.30	12.66	-1.24	-1.77	Matched[4895]
YNL144W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized gene YNL144C"	Dubious	chr14:353063-353146	353063-353146	99.6%	107.62	95.67	155.46	119.58	155.46	155.46	101.64	137.52	155.46	0.38	0.56	0.64	0.18	NaN	Covered/w/another[4896]
YNL144C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YNL144C is not an essential gene"	Uncharacterized	chr14:352822-355044	352822-355044	99.0%	62.71	91.34	94.97	80.43	84.52	69.07	77.03	87.70	76.80	0.28	0.36	0.32	-0.19	0.12	Matched[4896]
YNL143C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr14:356796-357188	356796-357188	95.4%	39.99	42.66	45.32	31.99	74.65	31.99	41.32	38.66	53.32	0.15	0.16	0.22	0.46	0.62	Frag<80[4898]
YNL142W	MEP2	Ammonium permease involved in regulation of pseudohyphal growth; belongs to a ubiquitous family of cytoplasmic membrane proteins that transport only ammonium (NH4+); expression is under the nitrogen catabolite repression regulation	Verified	chr14:357455-358954	357455-358954	98.7%	66.18	83.74	71.59	66.86	39.84	31.74	74.96	69.22	35.79	0.28	0.28	0.15	-0.95	-0.84	Matched[4899]
YNL141W	AAH1	"Adenine deaminase (adenine aminohydrolase), involved in purine salvage and nitrogen catabolism"	Verified	chr14:359598-360641	359598-360641	98.9%	500.52	316.58	305.93	182.98	47.44	20.33	408.55	244.45	33.88	1.51	0.99	0.14	-2.85	-2.99	Matched[4900]
YNL140C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene RLR1/YNL139C"	Dubious	chr14:360919-361488	360919-361488	99.2%	253.00	224.70	180.46	201.70	139.77	99.08	238.85	191.08	119.43	0.88	0.78	0.49	-0.68	-0.26	Covered/w/another[4901]
YNL139C	RLR1	"Subunit of the THO complex, which is required for efficient transcription elongation and involved in transcriptional elongation-associated recombination; required for LacZ RNA expression from certain plasmids"	Verified	chr14:360926-365719	360926-365719	99.2%	96.76	96.34	78.25	78.67	45.64	63.73	96.55	78.46	54.69	0.36	0.32	0.23	-0.52	-0.01	Matched[4901]
YNL138W-A	YSF3	"Component of the U2 snRNP, associated with the SF3b complex; conserved in Ashbya gossypii"	Verified	chr14:366035-366414	366035-366037,366160-366414	98.4%	157.51	137.82	149.63	114.19	208.70	141.76	147.66	131.91	175.23	0.55	0.54	0.73	0.41	NaN	Covered/w/another[4902]
YNL138W	SRV2	"CAP (cyclase-associated protein) subunit of adenylyl cyclase complex; N-terminus binds adenylyl cyclase and facilitates activation by RAS; C-terminus binds ADP-actin monomers, facilitating regulation of actin dynamics and cell morphogenesis"	Verified	chr14:366743-368323	366743-368323	98.8%	812.53	833.66	790.12	822.77	976.44	879.76	823.09	806.45	928.10	3.04	3.27	3.85	0.20	0.37	Matched[4902]
YNL137C	NAM9	Mitochondrial ribosomal component of the small subunit	Verified	chr14:368597-370057	368597-370057	99.2%	288.98	271.74	291.05	292.43	242.08	168.29	280.36	291.74	205.18	1.03	1.18	0.85	-0.51	-0.23	Matched[4903]
YNL136W	EAF7	"Subunit of the NuA4 histone acetyltransferase complex, which acetylates the N-terminal tails of histones H4 and H2A"	Verified	chr14:370370-371647	370370-371647	98.0%	206.09	259.61	200.50	192.51	216.48	177.33	232.85	196.51	196.90	0.86	0.80	0.82	0.00	0.13	Matched[4904]
YNL135C	FPR1	"Peptidyl-prolyl cis-trans isomerase (PPIase), binds to the drugs FK506 and rapamycin; also binds to the nonhistone chromatin binding protein Hmo1p and may regulate its assembly or function"	Verified	chr14:371884-372228	371884-372228	98.6%	4436.60	4424.84	4492.47	4160.24	6224.18	4436.60	4430.72	4326.35	5330.39	16.36	17.56	22.09	0.30	-0.46	Matched[4905]
YNL134C		Putative protein of unknown function with similarity to dehydrogenases from other model organisms; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and nucleus and is induced by the DNA-damaging agent MMS	Uncharacterized	chr14:372453-373583	372453-373583	98.8%	713.23	414.33	840.30	587.94	1787.99	1659.12	563.78	714.12	1723.55	2.08	2.90	7.14	1.27	1.63	Matched[4906]
YNL133C	FYV6	"Protein of unknown function, required for survival upon exposure to K1 killer toxin; proposed to regulate double-strand break repair via non-homologous end-joining"	Verified	chr14:374173-374694	374173-374694	99.5%	111.68	107.83	103.98	98.20	173.30	78.95	109.76	101.09	126.12	0.41	0.41	0.52	0.32	0.34	Matched[4908]
YNL132W	KRE33	Essential protein of unknown function; heterozygous mutant shows haploinsufficiency in K1 killer toxin resistance	Verified	chr14:375323-378493	375323-378493	98.8%	227.84	125.09	148.70	130.51	15.32	6.06	176.46	139.61	10.69	0.65	0.57	0.04	-3.71	-3.21	Matched[4909]
YNL131W	TOM22	Component of the TOM (translocase of outer membrane) complex responsible for initial import of mitochondrially directed proteins; acts as a receptor for precursor proteins and mediates interaction between the TOM and TIM complexes	Verified	chr14:378769-379227	378769-379227	98.7%	1246.90	1065.93	1266.76	1085.79	1129.93	924.69	1156.41	1176.28	1027.31	4.27	4.77	4.26	-0.20	-0.10	Matched[4910]
YNL130C	CPT1	"Cholinephosphotransferase, required for phosphatidylcholine biosynthesis and for inositol-dependent regulation of EPT1 transcription"	Verified	chr14:379560-380833	379560-380691,380784-380833	98.8%	333.81	317.55	336.38	300.43	640.23	501.57	325.68	318.40	570.90	1.20	1.29	2.37	0.84	0.35	Matched[4911]
YNL130C-A		Putative protein of unknown function	Uncharacterized	chr14:381247-381393	381247-381393	98.8%	27.55	27.55	20.67	0.00	55.11	41.33	27.55	10.33	48.22	0.10	0.04	0.20	2.22	NaN	Covered/w/another[4912]
YNL129W	NRK1	"Nicotinamide riboside kinase, catalyzes the synthesis of nicotinamide nucleotide (NMN) from nicotinamide riboside; involved in a salvage pathway for NAD+ biosynthesis"	Verified	chr14:381482-382204	381482-382204	98.8%	229.62	250.63	176.42	184.82	267.43	200.22	240.13	180.62	233.83	0.89	0.73	0.97	0.37	-0.12	Matched[4912]
YNL128W	TEP1	Homolog of human tumor suppressor gene PTEN/MMAC1/TEP1 that has lipid phosphatase activity and is linked to the phosphatidylinositol signaling pathway; plays a role in normal sporulation	Verified	chr14:382361-383665	382361-383665	98.7%	10.87	13.20	10.87	10.09	16.30	19.40	12.03	10.48	17.85	0.04	0.04	0.07	0.77	0.54	Frag<80[4913]
YNL127W	FAR11	"Protein involved in G1 cell cycle arrest in response to pheromone, in a pathway different from the Far1p-dependent pathway; interacts with Far3p, Far7p, Far8p, Far9p, and Far10p"	Verified	chr14:383989-386850	383989-386850	98.8%	65.76	69.65	69.65	58.34	112.43	110.67	67.71	64.00	111.55	0.25	0.26	0.46	0.80	0.95	Covered/w/another[4914]
YNL126W	SPC98	Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex; interacts with Spc110p at the spindle pole body (SPB) inner plaque and with Spc72p at the SPB outer plaque	Verified	chr14:387229-389769	387229-389769	99.1%	90.93	77.83	81.00	63.14	46.06	25.81	84.38	72.07	35.94	0.31	0.29	0.15	-1.00	-0.99	Covered/w/another[4914]
YNL125C	ESBP6	"Protein with similarity to monocarboxylate permeases, appears not to be involved in transport of monocarboxylates such as lactate, pyruvate or acetate across the plasma membrane"	Verified	chr14:390148-392169	390148-392169	98.5%	119.47	164.15	152.10	145.58	407.61	424.68	141.81	148.84	416.15	0.52	0.60	1.72	1.48	1.82	Covered/w/another[4914]
YNL124W	NAF1	"Protein required for the assembly of box H/ACA snoRNPs and for pre-rRNA processing, forms a complex with Shq1p and interacts with H/ACA snoRNP components Nhp2p and Cbf5p; has similarity to Gar1p and other RNA-binding proteins"	Verified	chr14:392894-394372	392894-394372	98.6%	140.63	110.44	102.90	58.31	89.18	76.83	125.54	80.60	83.00	0.46	0.33	0.34	0.04	0.45	Covered/w/another[4914]
YNL123W	NMA111	Protein of unknown function which may contribute to lipid homeostasis and/or apoptosis; sequence similarity to the mammalian Omi/HtrA2 family of serine proteases	Verified	chr14:394687-397680	394687-397680	98.9%	218.21	145.92	168.21	159.43	78.37	60.12	182.06	163.82	69.25	0.67	0.66	0.29	-1.24	-0.67	Covered/w/another[4914]
YNL122C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to mitochondria; YNL122C is not an essential gene	Uncharacterized	chr14:398025-398372	398025-398372	99.4%	237.08	202.39	306.47	254.43	410.55	251.54	219.73	280.45	331.04	0.81	1.14	1.37	0.24	0.15	Covered/w/another[4914]
YNL121C	TOM70	Component (70 kDa) of the TOM (translocase of outer membrane) complex responsible for recognition and initial import steps for all mitochondrially directed proteins; acts as a receptor for incoming precursor proteins	Verified	chr14:398686-400539	398686-400539	99.2%	739.98	728.01	736.17	754.66	458.88	408.32	733.99	745.41	433.60	2.71	3.03	1.80	-0.78	-0.31	Frag>80[4915,4916]
YNL119W	NCS2	"Protein with a role in urmylation and in invasive and pseudohyphal growth; inhibits replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts"	Uncharacterized	chr14:401042-402523	401042-402523	99.1%	109.61	85.78	66.04	46.98	14.30	6.13	97.70	56.51	10.21	0.36	0.23	0.04	-2.47	-1.82	Matched[4917]
YNL120C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; deletion enhances replication of Brome mosaic virus in S. cerevisiae, but likely due to effects on the overlapping gene"	Dubious	chr14:401035-401520	401035-401520	99.1%	66.44	64.36	45.67	22.84	4.15	6.23	65.40	34.26	5.19	0.24	0.14	0.02	-2.72	0.01	Covered/w/another[4917]
YNL118C	DCP2	"Catalytic subunit of the Dcp1p-Dcp2p decapping enzyme complex, which removes the 5' cap structure from mRNAs prior to their degradation; member of the Nudix hydrolase family"	Verified	chr14:402654-405566	402654-405566	99.2%	264.50	285.97	251.69	227.46	307.09	277.31	275.24	239.58	292.20	1.02	0.97	1.21	0.29	0.69	Matched[4918]
YNL117W	MLS1	"Malate synthase, enzyme of the glyoxylate cycle, involved in utilization of non-fermentable carbon sources; expression is subject to carbon catabolite repression; localizes in peroxisomes during growth in oleic acid medium"	Verified	chr14:406360-408024	406360-408024	98.6%	6.09	12.79	10.35	9.74	18.27	10.35	9.44	10.05	14.31	0.03	0.04	0.06	0.51	0.73	
YNL116W	DMA2	"Protein involved in regulating spindle position and orientation, functionally redundant with Dma1p; homolog of S. pombe Dma1 and H. sapiens Chfr"	Verified	chr14:408343-409911	408343-409911	98.7%	94.28	120.76	77.49	63.29	61.99	59.41	107.52	70.39	60.70	0.40	0.29	0.25	-0.21	0.29	Matched[4919]
YNL115C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to mitochondria; YNL115C is not an essential gene	Uncharacterized	chr14:410121-412055	410121-412055	99.2%	132.89	206.89	154.26	157.38	354.37	332.49	169.89	155.82	343.43	0.63	0.63	1.42	1.14	1.23	Matched[4920]
YNL113W	RPC19	"RNA polymerase subunit, common to RNA polymerases I and III"	Verified	chr14:412773-413201	412773-413201	98.3%	523.85	315.26	384.00	272.59	75.85	49.78	419.56	328.30	62.81	1.55	1.33	0.26	-2.39	-2.85	Matched[4921]
YNL114C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified ORF RPC19/YNL113W, an RNA polymerase subunit"	Dubious	chr14:412686-413057	412686-413057	98.3%	443.18	251.68	320.07	259.89	49.24	41.03	347.43	289.98	45.14	1.28	1.18	0.19	-2.68	-0.91	Matched[4921]
YNL112W	DBP2	"Essential ATP-dependent RNA helicase of the DEAD-box protein family, involved in nonsense-mediated mRNA decay and rRNA processing"	Verified	chr14:413641-416283	413641-414913,415916-416283	98.4%	663.07	266.84	305.22	241.45	40.86	34.05	464.96	273.34	37.46	1.72	1.11	0.16	-2.87	-1.79	Covered/w/another[4922]
YNL111C	CYB5	"Cytochrome b5, involved in the sterol and lipid biosynthesis pathways; required for sterol C5-6 and fatty acid desaturation"	Verified	chr14:416942-417304	416942-417304	99.4%	291.03	446.24	254.99	199.56	58.21	41.58	368.63	227.28	49.89	1.36	0.92	0.21	-2.19	-1.76	Covered/w/another[4922]
YNL110C	NOP15	"Constituent of 66S pre-ribosomal particles, involved in 60S ribosomal subunit biogenesis; localizes to both nucleolus and cytoplasm"	Verified	chr14:417828-418490	417828-418490	99.5%	571.32	342.49	386.44	306.12	33.34	4.55	456.90	346.28	18.94	1.69	1.41	0.08	-4.19	-4.46	Covered/w/another[4922]
YNL109W		Hypothetical protein	Dubious	chr14:418966-419511	418966-419511	99.1%	282.68	225.40	253.12	212.47	177.37	134.87	254.04	232.79	156.12	0.94	0.94	0.65	-0.58	1.21	Matched[4923]
YNL108C		Putative protein of unknown function with similarity to Tfc7p and prokaryotic phosphotransfer enzymes; null mutant shows alterations in glucose metabolism; GFP-fusion protein localizes to the cytoplasm and nucleus	Uncharacterized	chr14:419016-419828	419016-419828	99.1%	245.85	207.36	234.67	173.83	161.42	120.44	226.60	204.25	140.93	0.84	0.83	0.58	-0.54	-0.29	Matched[4923]
YNL107W	YAF9	"Subunit of both the NuA4 histone H4 acetyltransferase complex and the SWR1 complex, may function to antagonize silencing near telomeres; interacts directly with Swc4p, has homology to human leukemogenic protein AF9, contains a YEATS domain"	Verified	chr14:420100-420780	420100-420780	98.7%	105.65	83.33	102.68	96.73	101.19	66.96	94.49	99.70	84.08	0.35	0.40	0.35	-0.25	-0.12	Covered/w/another[4924]
YNL105W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene INP52"	Dubious	chr14:424157-424585	424157-424585	99.4%	25.81	44.57	37.54	25.81	35.19	28.15	35.19	31.67	31.67	0.13	0.13	0.13	0.00	-0.02	Covered/w/another[4924]
YNL106C	INP52	"Phosphatidylinositol 4,5-bisphosphate 5-phosphatase, synaptojanin-like protein with an N-terminal Sac1 domain, plays a role in endocytosis; hyperosmotic stress causes translocation to actin patches"	Verified	chr14:420946-424497	420946-424497	99.0%	46.90	67.65	55.71	49.46	46.05	38.94	57.27	52.58	42.49	0.21	0.21	0.18	-0.31	0.16	Covered/w/another[4924]
YNL103W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene MET4/YNL104C"	Dubious	chr14:426721-426810	426721-426810	99.3%	257.46	671.64	436.57	391.79	223.88	279.85	464.55	414.18	251.87	1.71	1.68	1.04	-0.72	NaN	Covered/w/another[4925]
YNL104C	LEU4	Alpha-isopropylmalate synthase (2-isopropylmalate synthase); the main isozyme responsible for the first step in the leucine biosynthesis pathway	Verified	chr14:424897-426756	424897-426756	89.9%	684.45	1098.47	778.38	744.88	507.95	485.22	891.46	761.63	496.58	3.29	3.09	2.06	-0.62	-0.06	Matched[4925]
YNL103W	MET4	"Lecine-zipper transcriptional activator, responsible for the regulation of the sulfur amino acid pathway, requires different combinations of the auxiliary factors Cbf1p, Met28p, Met31p and Met32p"	Verified	chr14:427737-429755	427737-429755	98.8%	186.98	210.04	163.92	148.88	138.36	125.32	198.51	156.40	131.84	0.73	0.63	0.55	-0.25	0.19	Matched[4926]
YNL102W	POL1	"Catalytic subunit of the DNA polymerase I alpha-primase complex, required for the initiation of DNA replication during mitotic DNA synthesis and premeiotic DNA synthesis"	Verified	chr14:430089-434495	430089-434495	98.7%	137.72	108.52	109.44	98.40	25.75	18.62	123.12	103.92	22.19	0.45	0.42	0.09	-2.23	-1.68	Matched[4927]
YNL101W	AVT4	"Vacuolar transporter, exports large neutral amino acids from the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters"	Verified	chr14:435001-437142	435001-437142	99.0%	119.73	130.57	98.05	107.00	107.00	99.46	125.15	102.52	103.23	0.46	0.42	0.43	0.01	0.30	Matched[4928]
YNL100W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YNL100W is not an essential gene"	Uncharacterized	chr14:437615-438319	437615-438319	98.8%	195.34	248.49	271.47	270.03	555.87	334.67	221.92	270.75	445.27	0.82	1.10	1.84	0.72	0.57	Covered/w/another[4929]
YNL099C	OCA1	"Putative protein tyrosine phosphatase, required for cell cycle arrest in response to oxidative damage of DNA"	Verified	chr14:438569-439285	438569-439285	99.0%	314.20	318.42	356.46	286.02	333.92	252.20	316.31	321.24	293.06	1.17	1.30	1.21	-0.13	-0.05	Covered/w/another[4929]
YNL098C	RAS2	"GTP-binding protein that regulates the nitrogen starvation response, sporulation, and filamentous growth; farnesylation and palmitoylation required for activity and localization to plasma membrane; homolog of mammalian Ras proto-oncogenes"	Verified	chr14:439604-440572	439604-440572	99.1%	844.46	881.95	1061.04	898.61	1929.45	1282.83	863.20	979.83	1606.14	3.19	3.98	6.65	0.71	0.77	Matched[4930]
YNL097C-B		Putative protein of unknown function	Uncharacterized	chr14:440799-440921	440799-440921	99.5%	73.57	49.05	98.09	40.87	57.22	24.52	61.31	69.48	40.87	0.23	0.28	0.17	-0.77	NaN	Matched[4931]
YNL097W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified gene PHO23/YNL097C"	Dubious	chr14:441433-441588	441433-441588	99.0%	116.50	122.98	84.14	84.14	155.34	135.92	119.74	84.14	145.63	0.44	0.34	0.60	0.79	NaN	Covered/w/another[4932]
YNL097C	PHO23	"Probable component of the Rpd3 histone deacetylase complex, involved in transcriptional regulation of PHO5; C-terminus has similarity to human candidate tumor suppressor p33(ING1)"	Verified	chr14:441368-442360	441368-442360	98.9%	105.85	77.35	94.66	79.39	154.71	101.78	91.60	87.02	128.24	0.34	0.35	0.53	0.56	0.38	Matched[4932]
YNL096C	RPS7B	"Protein component of the small (40S) ribosomal subunit, nearly identical to Rps7Ap; interacts with Kti11p; deletion causes hypersensitivity to zymocin; has similarity to rat S7 and Xenopus S8 ribosomal proteins"	Verified	chr14:443400-444317	443400-443828,444174-444317	80.9%	3956.11	3319.42	3164.03	2348.20	1102.88	638.85	3637.77	2756.12	870.86	13.43	11.19	3.61	-1.66	-1.68	Matched[4933]
YNL095C		Putative protein of unknown function predicted to contain a transmembrane domain; YNL095C is not an essential gene	Uncharacterized	chr14:444914-446842	444914-446842	98.9%	76.52	95.91	53.98	35.64	53.46	36.69	86.22	44.81	45.07	0.32	0.18	0.19	0.01	0.41	Matched[4934]
YNL094W	APP1	"Protein of unknown function, interacts with Rvs161p and Rvs167p; computational analysis of protein-protein interactions in large-scale studies suggests a possible role in actin filament organization"	Verified	chr14:447613-449376	447613-449376	98.8%	157.18	218.56	139.97	134.81	158.32	124.48	187.87	137.39	141.40	0.69	0.56	0.59	0.04	0.36	Matched[4935]
YNL093W	YPT53	"GTPase, similar to Ypt51p and Ypt52p and to mammalian rab5; required for vacuolar protein sorting and endocytosis"	Verified	chr14:449870-450532	449870-450532	98.5%	12.25	33.68	10.71	12.25	111.74	88.78	22.96	11.48	100.26	0.08	0.05	0.42	3.13	3.40	Covered/w/another[4937]
YNL092W		Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family; YNL092W is not an essential gene	Uncharacterized	chr14:450873-452075	450873-452075	98.8%	20.20	37.87	36.19	34.51	134.66	111.10	29.04	35.35	122.88	0.11	0.14	0.51	1.80	2.02	Covered/w/another[4937]
YNL091W	NST1	"Protein of unknown function, mediates sensitivity to salt stress; interacts physically with the splicing factor Msl1p and also displays genetic interaction with MSL1"	Verified	chr14:452410-456132	452410-456132	98.5%	373.73	354.92	324.11	330.66	325.75	397.71	364.32	327.39	361.73	1.34	1.33	1.50	0.14	0.78	Frag>80[4938,4939]
YNL090W	RHO2	"Non-essential small GTPase of the Rho/Rac subfamily of Ras-like proteins, involved in the establishment of cell polarity and in microtubule assembly"	Verified	chr14:456567-457145	456567-457145	98.6%	306.61	243.54	317.13	224.27	350.42	210.25	275.08	270.70	280.33	1.02	1.10	1.16	0.05	-0.21	Matched[4940]
YNL089C		Dubious open reading frame unlikely to encode a functional protein; almost completely overlaps YNL090W/RHO2 which encodes a small GTPase of the Rho/Rac subfamily of Ras-like proteins	Dubious	chr14:456695-457171	456695-457171	98.4%	319.49	259.85	330.14	236.42	366.35	215.12	289.67	283.28	290.73	1.07	1.15	1.20	0.04	0.13	Matched[4940]
YNL088W	TOP2	"Essential type II topoisomerase, relieves torsional strain in DNA by cleaving and re-sealing the phosphodiester backbone of both positively and negatively supercoiled DNA; cleaves complementary strands; localizes to axial cores in meiosis"	Verified	chr14:457706-461992	457706-461992	98.6%	236.27	185.66	197.96	206.24	123.22	158.22	210.97	202.10	140.72	0.78	0.82	0.58	-0.52	0.14	Matched[4941]
YNL087W	TCB2	Bud-specific protein with a potential role in membrane trafficking; GFP-fusion protein migrates from the cell surface to intracellular vesicles near vacuole; contains 3 calcium and lipid binding domains; mRNA is targeted to the bud	Verified	chr14:462413-465949	462413-465949	98.8%	218.38	197.20	200.63	190.33	55.81	54.38	207.79	195.48	55.10	0.77	0.79	0.23	-1.83	-1.06	Matched[4942]
YNL086W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to endosomes	Uncharacterized	chr14:466336-466644	466336-466644	98.9%	98.21	98.21	68.75	58.93	124.40	94.94	98.21	63.84	109.67	0.36	0.26	0.45	0.78	0.53	Covered/w/another[4943]
YNL085W	MKT1	Protein that forms a complex with Pbp1p that may mediate posttranscriptional regulation of HO endonuclease; involved in propagation of M2 dsRNA satellite of L-A virus; contains a DTG signature typical of retroviral proteases	Verified	chr14:467133-469625	467133-469625	99.1%	496.46	417.90	454.34	433.69	257.14	242.15	457.18	444.02	249.65	1.69	1.80	1.03	-0.83	-0.32	Covered/w/another[4943]
YNL084C	END3	"EH domain-containing protein involved in endocytosis, actin cytoskeletal organization and cell wall morphogenesis; forms a complex with Sla1p and Pan1p"	Verified	chr14:470055-471104	470055-471104	99.4%	541.32	557.60	512.57	539.40	806.71	491.50	549.46	525.99	649.10	2.03	2.14	2.69	0.30	0.20	Covered/w/another[4943]
YNL083W	SAL1	"Probable transporter, member of the Ca2+-binding subfamily of the mitochondrial carrier family, with two EF-hand motifs; Pet9p and Sal1p have an overlapping function critical for viability; polymorphic in different S. cerevisiae strains"	Verified	chr14:471379-473016	471379-473016	98.8%	90.85	93.32	88.38	82.82	103.83	80.96	92.09	85.60	92.40	0.34	0.35	0.38	0.11	0.68	Matched[4944]
YNL082W	PMS1	"ATP-binding protein required for mismatch repair in mitosis and meiosis; functions as a heterodimer with Mlh1p, binds double- and single-stranded DNA via its N-terminal domain, similar to E. coli MutL"	Verified	chr14:473392-476013	473392-476013	98.8%	83.38	88.01	66.40	53.27	41.30	21.62	85.70	59.83	31.46	0.32	0.24	0.13	-0.93	-0.84	Frag>80[4945,4946,4947]
YNL081C	SWS2	"Putative mitochondrial ribosomal protein of the small subunit, has similarity to E. coli S13 ribosomal protein; participates in controlling sporulation efficiency"	Verified	chr14:476189-476620	476189-476620	99.2%	410.85	443.54	499.56	415.52	672.31	350.16	427.20	457.54	511.23	1.58	1.86	2.12	0.16	0.04	Frag>80[4947,4948]
YNL080C	EOS1	Protein involved in N-glycosylation; deletion mutation confers sensitivity to exidative stress and shows synthetic lethality with mutations in the spindle checkpoint genes BUB3 and MAD1; YNL080C is not an essential gene	Verified	chr14:476933-478033	476933-478033	98.7%	230.97	237.41	249.38	180.36	253.98	184.96	234.19	214.87	219.47	0.86	0.87	0.91	0.03	0.41	Matched[4949]
YNL079C	TPM1	"Major isoform of tropomyosin; binds to and stabilizes actin cables and filaments, which direct polarized cell growth and the distribution of several organelles; acetylated by the NatB complex and acetylated form binds actin most efficiently"	Verified	chr14:478567-479166	478567-479166	99.4%	2538.85	2496.93	2208.50	2288.99	3613.75	2426.50	2517.89	2248.74	3020.12	9.29	9.13	12.51	0.43	-0.67	Frag>80[4950,4951]
YNL078W	NIS1	Protein localized in the bud neck at G2/M phase; physically interacts with septins; possibly involved in a mitotic signaling network	Verified	chr14:479769-480992	479769-480992	98.6%	212.85	266.69	249.29	222.79	228.59	120.09	239.77	236.04	174.34	0.89	0.96	0.72	-0.44	-0.40	Matched[4952]
YNL077W	APJ1	"Putative chaperone of the HSP40 (DNAJ) family; overexpression interferes with propagation of the [Psi+] prion; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr14:481392-482978	481392-482978	98.6%	31.31	44.09	38.34	46.00	600.59	657.46	37.70	42.17	629.02	0.14	0.17	2.61	3.90	3.44	Matched[4953]
YNL076W	MKS1	Pleiotropic negative transcriptional regulator involved in Ras-CAMP and lysine biosynthetic pathways and nitrogen regulation; involved in retrograde (RTG) mitochondria-to-nucleus signaling	Verified	chr14:483557-485311	483557-485311	98.8%	117.68	128.64	129.79	117.10	162.67	158.63	123.16	123.45	160.65	0.45	0.50	0.67	0.38	0.72	Matched[4954]
YNL075W	IMP4	"Component of the SSU processome, which is required for pre-18S rRNA processing; interacts with Mpp10p; member of a superfamily of proteins that contain a sigma(70)-like motif and associate with RNAs"	Verified	chr14:485608-486480	485608-486480	98.6%	243.88	142.84	180.01	121.94	19.74	8.13	193.36	150.97	13.94	0.71	0.61	0.06	-3.44	-2.97	Matched[4955]
YNL074C	MLF3	Serine-rich protein of unknown function; overproduction suppresses the growth inhibition caused by exposure to the immunosuppressant leflunomide	Verified	chr14:486767-488125	486767-488125	98.5%	277.21	298.88	277.21	286.18	741.97	721.05	288.04	281.69	731.51	1.06	1.14	3.03	1.38	1.58	Matched[4956]
YNL073W	MSK1	"Mitochondrial lysine-tRNA synthetase, required for import of both aminoacylated and deacylated forms of tRNA(Lys) into mitochondria"	Verified	chr14:488387-490117	488387-490117	98.6%	168.69	172.79	185.09	152.29	241.32	199.74	170.74	168.69	220.53	0.63	0.68	0.91	0.39	0.58	Matched[4957]
YNL072W	RNH201	"Ribonuclease H2 catalytic subunit, removes RNA primers during Okazaki fragment synthesis; cooperates with Rad27p nuclease"	Verified	chr14:490318-491241	490318-491241	98.3%	89.19	84.79	94.70	81.48	88.09	40.74	86.99	88.09	64.42	0.32	0.36	0.27	-0.45	-0.99	Matched[4958]
YNL071W	LAT1	"Dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase complex, which catalyzes the oxidative decarboxylation of pyruvate to acetyl-CoA"	Verified	chr14:491524-492972	491524-492972	98.6%	1709.24	2469.06	1813.49	1878.55	2095.44	2408.89	2089.15	1846.02	2252.16	7.71	7.49	9.33	0.29	0.71	Matched[4959]
YNL070W	TOM7	Component of the TOM (translocase of outer membrane) complex responsible for recognition and initial import steps for all mitochondrially directed proteins; promotes assembly and stability of the TOM complex	Verified	chr14:493367-493549	493367-493549	99.1%	1196.14	1008.73	1080.39	942.58	1570.97	953.61	1102.43	1011.48	1262.29	4.07	4.11	5.23	0.32	-0.22	Matched[4960]
YNL069C	RPL16B	"N-terminally acetylated protein component of the large (60S) ribosomal subunit, binds to 5.8 S rRNA; has similarity to Rpl16Ap, E. coli L13 and rat L13a ribosomal proteins; transcriptionally regulated by Rap1p"	Verified	chr14:493957-495002	493957-494525,494975-495002	90.5%	8197.47	7251.47	7194.08	6277.69	1843.88	1364.39	7724.47	6735.88	1604.13	28.51	27.34	6.65	-2.07	-2.44	Frag>80[4961,4962]
YNL068C	FKH2	Forkhead family transcription factor with a major role in the expression of G2/M phase genes; positively regulates transcriptional elongation; negative role in chromatin silencing at HML and HMR; substrate of the Cdc28p/Clb5p kinase	Verified	chr14:495702-498290	495702-498290	99.0%	106.15	108.88	96.78	75.32	65.95	85.47	107.52	86.05	75.71	0.40	0.35	0.31	-0.18	0.65	Matched[4963]
YNL067W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr14:498539-498685	498539-498685	98.2%	6.92	13.85	0.00	0.00	6.92	48.47	10.39	0.00	27.70	0.04	0.00	0.11	Inf	0.49	Covered/w/another[4963]
YNL067W-B		Putative protein of unknown function	Uncharacterized	chr14:499418-499558	499418-499558	98.7%	0.00	7.18	0.00	0.00	7.18	14.37	3.59	0.00	10.78	0.01	0.00	0.04	Inf	NaN	
YNL067W	RPL9B	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl9Ap and has similarity to E. coli L6 and rat L9 ribosomal proteins"	Verified	chr14:499682-500257	499682-500257	51.6%	3226.24	2987.38	2593.78	1894.03	1160.64	534.90	3106.81	2243.90	847.77	11.47	9.11	3.51	-1.40	-2.08	Frag>80[4964,4965]
YNL066W	SUN4	"Cell wall protein related to glucanases, possibly involved in cell wall septation; member of the SUN family"	Verified	chr14:501157-502778	501157-501158,501504-502778	98.6%	866.95	793.91	714.52	577.97	278.66	193.71	830.43	646.25	236.19	3.07	2.62	0.98	-1.45	-1.05	Matched[4966]
YNL065W	AQR1	"Plasma membrane multidrug transporter of the major facilitator superfamily, confers resistance to short-chain monocarboxylic acids and quinidine"	Verified	chr14:503725-505485	503725-505485	98.8%	206.33	202.30	102.30	81.04	14.37	6.90	204.32	91.67	10.63	0.75	0.37	0.04	-3.11	-3.27	Matched[4967]
YNL064C	YDJ1	Protein chaperone involved in regulation of the HSP90 and HSP70 functions; involved in protein translocation across membranes; member of the DnaJ family	Verified	chr14:505869-507098	505869-507098	99.2%	1133.49	642.56	876.14	850.73	4596.25	4104.50	888.02	863.44	4350.37	3.28	3.50	18.03	2.33	1.64	Frag>80[4968,4969]
YNL063W	MTQ1	S-adenosylmethionine-dependent Methyltransferase; methylates translational release factor Mrf1p; similar to E.coli PrmC; is not an essential gene	Verified	chr14:507759-508703	507759-508703	98.7%	99.72	72.91	97.57	76.13	258.41	167.27	86.32	86.85	212.84	0.32	0.35	0.88	1.29	1.69	Matched[4970]
YNL062C	GCD10	"Subunit of tRNA (1-methyladenosine) methyltransferase with Gcd14p, required for the modification of the adenine at position 58 in tRNAs, especially tRNAi-Met; first identified as a negative regulator of GCN4 expression"	Verified	chr14:508777-510213	508777-510213	99.2%	159.23	89.09	111.53	99.61	11.22	5.61	124.16	105.57	8.42	0.46	0.43	0.03	-3.65	-2.90	Matched[4971]
YNL061W	NOP2	"Probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis; localized to the nucleolus; constituent of 66S pre-ribosomal particles"	Verified	chr14:510541-512397	510541-512397	98.5%	404.09	243.33	279.97	244.42	27.34	10.94	323.71	262.20	19.14	1.19	1.06	0.08	-3.78	-3.28	Frag>80[4972,4973]
YNL059C	ARP5	"Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling enzyme complexes"	Verified	chr14:512669-514936	512669-514936	99.3%	285.46	251.28	244.62	242.84	201.55	160.27	268.37	243.73	180.91	0.99	0.99	0.75	-0.43	0.01	Matched[4974]
YNL057W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr14:516404-516736	516404-516736	98.5%	234.76	265.24	207.32	259.15	454.27	384.15	250.00	233.23	419.21	0.92	0.95	1.74	0.85	-0.04	Matched[4976]
YNL058C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the vacuole; YNL058C is not an essential gene	Uncharacterized	chr14:515764-516714	515764-516714	98.6%	310.33	365.79	261.28	289.00	547.08	452.17	338.06	275.14	499.62	1.25	1.12	2.07	0.86	1.08	Matched[4976]
YNL056W	OCA2	Putative protein with similarity to predicted tyrosine phosphatases Oca1p and Siw14p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YNL056W is not an essential gene	Verified	chr14:517250-517843	517250-517843	98.4%	430.92	335.16	314.64	324.90	347.13	160.74	383.04	319.77	253.94	1.41	1.30	1.05	-0.33	-0.18	Matched[4977]
YNL055C	POR1	"Mitochondrial porin (voltage-dependent anion channel), outer membrane protein required for the maintenance of mitochondrial osmotic stability and mitochondrial membrane permeability; phosphorylated"	Verified	chr14:517995-518846	517995-518846	98.5%	1956.09	3441.34	2384.03	2895.40	5551.21	5256.78	2698.72	2639.71	5403.99	9.96	10.72	22.39	1.03	0.71	Frag>80[4978,4979,4980]
YNL054W	VAC7	Integral vacuolar membrane protein involved in vacuole inheritance and morphology; activates Fab1p kinase activity under basal conditions and also after hyperosmotic shock	Verified	chr14:526087-529584	526087-529584	98.8%	76.36	69.13	70.00	67.11	66.82	84.17	72.75	68.55	75.49	0.27	0.28	0.31	0.14	0.61	Covered/w/another[4984]
YNL053W	MSG5	Dual-specificity protein phosphatase required for maintenance of a low level of signaling through the cell integrity pathway; regulates and is regulated by Slt2p; also required for adaptive response to pheromone	Verified	chr14:529943-531412	529943-531412	98.8%	88.13	97.77	89.51	84.69	36.49	18.59	92.95	87.10	27.54	0.34	0.35	0.11	-1.66	-0.60	Covered/w/another[4984]
YNL052W	COX5A	"Subunit Va of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; predominantly expressed during aerobic growth while its isoform Vb (Cox5Bp) is expressed during anaerobic growth"	Verified	chr14:531726-532187	531726-532187	98.4%	420.24	470.85	583.06	666.67	695.27	523.65	445.54	624.86	609.46	1.64	2.54	2.53	-0.04	-0.25	Matched[4985]
YNL051W	COG5	"Component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering complex that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments"	Verified	chr14:532660-533871	532660-533871	99.1%	120.67	142.31	118.18	122.34	190.58	134.82	131.49	120.26	162.70	0.49	0.49	0.67	0.44	0.61	Covered/w/another[4986]
YNL050C		Putative protein of unknown function; YNL050c is not an essential gene	Uncharacterized	chr14:534080-534983	534080-534875,534967-534983	99.4%	169.50	132.38	134.86	121.25	120.01	55.68	150.94	128.05	87.84	0.56	0.52	0.36	-0.54	-0.50	Covered/w/another[4986]
YNL049C	SFB2	"Probable component of COPII coated vesicles that binds to Sec23p; similar to and functionally redundant with Sec24p, but expressed at low levels; involved in ER to Golgi transport and in autophagy"	Verified	chr14:535282-537912	535282-537912	99.0%	177.45	146.34	120.99	124.45	89.88	99.48	161.89	122.72	94.68	0.60	0.50	0.39	-0.37	0.10	Covered/w/another[4986]
YNL048W	ALG11	"Alpha-1,2-mannosyltransferase, catalyzes sequential addition of the two terminal alpha 1,2-mannose residues to the Man5GlcNAc2-PP-dolichol intermediate during asparagine-linked glycosylation in the ER"	Verified	chr14:538174-539820	538174-539820	98.9%	184.17	168.21	175.58	170.05	112.34	84.72	176.19	172.81	98.53	0.65	0.70	0.41	-0.81	-0.56	Matched[4987]
YNL047C	SLM2	"Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm1p; acts downstream of Mss4p in a pathway regulating actin cytoskeleton organization in response to stress; subunit of and phosphorylated by the TORC2 complex"	Verified	chr14:539912-541882	539912-541882	98.9%	69.79	75.94	70.81	52.85	65.17	32.84	72.87	61.83	49.00	0.27	0.25	0.20	-0.34	-0.04	Matched[4988]
YNL046W		Putative protein of unknown function; expression depends on Swi5p; GFP-fusion protein localizes to the endoplasmic reticulum; deletion confers sensitivity to 4-(N-(S-glutathionylacetyl)amino) phenylarsenoxide (GSAO)	Uncharacterized	chr14:542305-542823	542305-542823	98.7%	212.80	273.33	208.90	160.09	339.71	148.38	243.07	184.50	244.04	0.90	0.75	1.01	0.40	0.04	Covered/w/another[4989]
YNL045W		"Leucyl aminopeptidase (leukotriene A4 hydrolase) with epoxide hydrolase activity, metalloenzyme containing one zinc atom; role in vivo is not defined; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus"	Verified	chr14:542964-544979	542964-544979	99.0%	226.38	327.05	273.96	267.45	463.27	436.73	276.71	270.70	450.00	1.02	1.10	1.86	0.73	1.05	Covered/w/another[4989]
YNL044W	YIP3	"Protein localized to COPII vesicles, proposed to be involved in ER to Golgi transport; interacts with members of the Rab GTPase family and Yip1p; also interacts with Rtn1p"	Verified	chr14:545269-545878	545269-545292,545372-545878	99.2%	609.59	522.23	560.22	537.43	634.28	332.33	565.91	548.82	483.30	2.09	2.23	2.00	-0.18	-0.17	Matched[4990]
YNL043C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YIP3/YNL044W"	Dubious	chr14:545590-545910	545590-545910	99.1%	704.31	572.25	666.58	628.85	720.03	327.00	638.28	647.71	523.52	2.36	2.63	2.17	-0.31	-0.80	Matched[4990]
YNL042W-B		Putative protein of unknown function	Uncharacterized	chr14:547114-547371	547114-547371	72.0%	5.38	10.77	5.38	0.00	5.38	10.77	8.08	2.69	8.08	0.03	0.01	0.03	1.58	NaN	
YNL042W	BOP3	"Protein of unknown function, potential Cdc28p substrate; overproduction suppresses a pam1 slv3 double null mutation and confers resistance to methylmercury"	Verified	chr14:548101-549291	548101-549291	98.8%	67.97	77.32	67.97	45.88	124.90	77.32	72.64	56.93	101.11	0.27	0.23	0.42	0.83	0.99	Matched[4992]
YNL041C	COG6	"Component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering complex that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments"	Verified	chr14:549469-551988	549469-551988	99.3%	178.23	172.64	150.26	145.86	119.89	90.31	175.43	148.06	105.10	0.65	0.60	0.44	-0.49	-0.20	Matched[4993]
YNL040W		Putative protein of unknown function with strong similarity to alanyl-tRNA synthases from Eubacteria; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YNL040W is not an essential gene	Uncharacterized	chr14:553381-554751	553381-554751	98.7%	108.68	104.98	104.98	105.72	136.04	116.07	106.83	105.35	126.06	0.39	0.43	0.52	0.26	0.22	Covered/w/another[4995]
YNL039W	BDP1	"Essential subunit of RNA polymerase III transcription factor (TFIIIB), which is involved in transcription of genes encoding tRNAs, 5S rRNA, U6 snRNA, and other small RNAs"	Verified	chr14:555049-556833	555049-556833	98.4%	177.70	193.08	158.90	150.36	203.33	163.46	185.39	154.63	183.39	0.68	0.63	0.76	0.25	0.51	Covered/w/another[4995]
YNL038W	GPI15	"Protein involved in the synthesis of N-acetylglucosaminyl phosphatidylinositol (GlcNAc-PI), the first intermediate in the synthesis of glycosylphosphatidylinositol (GPI) anchors; homologous to the human PIG-H protein"	Verified	chr14:557021-557784	557021-557611,557686-557784	99.0%	273.66	241.46	213.66	204.88	182.93	42.44	257.56	209.27	112.68	0.95	0.85	0.47	-0.89	-0.73	Covered/w/another[4995]
YNL037C	IDH1	"Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase, which catalyzes the oxidation of isocitrate to alpha-ketoglutarate in the TCA cycle"	Verified	chr14:557921-559003	557921-559003	98.9%	631.33	1087.09	543.54	630.40	1276.68	940.46	859.21	586.97	1108.57	3.17	2.38	4.59	0.92	0.86	Matched[4996]
YNL036W	NCE103	Carbonic anhydrase; poorly transcribed under aerobic conditions and at an undetectable level under anaerobic conditions; involved in non-classical protein export pathway	Verified	chr14:559815-560480	559815-560480	99.1%	124.21	143.90	180.26	124.21	493.81	177.23	134.06	152.23	335.52	0.49	0.62	1.39	1.14	0.57	Frag>80[4997,4998]
YNL035C		Putative protein of unknown function with similarity to proteins containing WD-40 domains; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; YNL035C is not an essential gene	Uncharacterized	chr14:568523-569692	568523-569692	99.1%	145.71	100.88	112.95	96.57	97.43	96.57	123.29	104.76	97.00	0.46	0.43	0.40	-0.11	0.19	Matched[5000]
YNL034W		Putative protein of unknown function; YNL034W is not an essential gene	Uncharacterized	chr14:570478-572316	570478-572316	19.3%	8.47	2.82	5.64	0.00	14.11	11.29	5.64	2.82	12.70	0.02	0.01	0.05	2.17	0.54	
YNL033W		Putative protein of unknown function	Uncharacterized	chr14:573000-573854	573000-573854	0.5%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	1.13	
YNL032W	SIW14	Tyrosine phosphatase that plays a role in actin filament organization and endocytosis; localized to the cytoplasm	Verified	chr14:574507-575352	574507-575352	98.5%	178.74	142.75	164.34	128.36	170.34	76.77	160.74	146.35	123.56	0.59	0.59	0.51	-0.24	-0.61	Matched[5001]
YNL031C	HHT2	"One of two identical histone H3 proteins (see also HHT1); core histone required for chromatin assembly, involved in heterochromatin-mediated telomeric and HM silencing; regulated by acetylation, methylation, and mitotic phosphorylation"	Verified	chr14:575641-576051	575641-576051	62.7%	6678.73	5875.89	6477.05	5449.26	9928.89	6380.09	6277.31	5963.15	8154.49	23.17	24.21	33.79	0.45	-0.77	Matched[5002]
YNL030W	HHF2	One of two identical histone H4 proteins (see also HHF1); core histone required for chromatin assembly and chromosome function; contributes to telomeric silencing; N-terminal domain involved in maintaining genomic integrity	Verified	chr14:576728-577039	576728-577039	31.7%	6581.30	5034.54	6156.70	4599.83	6803.71	3598.99	5807.92	5378.26	5201.35	21.44	21.83	21.55	-0.05	-0.69	Matched[5004]
YNL028W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr14:578680-578997	578680-578997	99.3%	12.67	9.50	25.35	15.84	19.01	9.50	11.09	20.59	14.26	0.04	0.08	0.06	-0.53	0.05	Overlap[5005]
YNL029C	KTR5	Putative mannosyltransferase involved in protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family	Verified	chr14:577206-578774	577206-578774	99.2%	85.49	74.56	75.85	57.21	77.78	58.49	80.03	66.53	68.14	0.30	0.27	0.28	0.03	0.22	Matched[5005]
YNL027W	CRZ1	Transcription factor that activates transcription of genes involved in stress response; nuclear localization is positively regulated by calcineurin-mediated dephosphorylation	Verified	chr14:579581-581617	579581-581617	98.2%	100.50	96.50	90.50	98.00	99.00	95.50	98.50	94.25	97.25	0.36	0.38	0.40	0.05	0.42	Covered/w/another[5006]
YNL026W	SAM50	"Essential component of the Sorting and Assembly Machinery (SAM or Tob complex) of the mitochondrial outer membrane, which binds precursors of beta-barrel proteins and facilitates their outer membrane insertion; homologous to bacterial Omp85"	Verified	chr14:581921-583375	581921-583375	98.9%	155.74	155.74	152.26	146.70	254.47	207.19	155.74	149.48	230.83	0.57	0.61	0.96	0.63	0.91	Covered/w/another[5006]
YNL025C	SSN8	"Cyclin-like component of the RNA polymerase II holoenzyme, involved in phosphorylation of the RNA polymerase II C-terminal domain; involved in glucose repression and telomere maintenance"	Verified	chr14:584321-585292	584321-585292	99.1%	73.74	98.67	98.67	82.05	187.99	111.14	86.21	90.36	149.57	0.32	0.37	0.62	0.73	1.08	Covered/w/another[5006]
YNL024C-A		Putative protein of unknown function; YNL024C-A is an essential gene	Uncharacterized	chr14:586603-586821	586603-586821	98.8%	517.42	526.66	563.62	531.28	549.76	448.12	522.04	547.45	498.94	1.93	2.22	2.07	-0.13	NaN	Matched[5008]
YNL024C		Putative protein of unknown function with seven beta-strand methyltransferase motif; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YNL024C is not an essential gene	Uncharacterized	chr14:587108-587848	587108-587848	99.3%	93.74	124.99	52.99	38.04	20.38	8.15	109.37	45.51	14.27	0.40	0.18	0.06	-1.67	-2.15	Matched[5009]
YNL023C	FAP1	"Protein that binds to Fpr1p (FKBP12), conferring rapamycin resistance by competing with rapamycin for Fpr1p binding; has similarity to putative transcription factors, including D. melanogaster shuttle craft and human NFX1"	Verified	chr14:588264-591161	588264-591161	99.0%	92.69	60.63	49.83	38.33	13.94	6.97	76.66	44.08	10.45	0.28	0.18	0.04	-2.08	-1.43	Frag>80[5010,5011,5012]
YNL022C		Putative protein of unknown function with seven beta-strand methyltransferase motif similar to NOP2/YNL061W; green fluorescent protein (GFP)-fusion protein localizes to a single spot in the nucleus; YNL022C is not an essential gene	Uncharacterized	chr14:591428-592900	591428-592900	99.1%	137.68	96.58	93.84	82.19	33.56	18.49	117.13	88.02	26.03	0.43	0.36	0.11	-1.76	-1.22	Matched[5013]
YNL021W	HDA1	"Putative catalytic subunit of a class II histone deacetylase complex that also contains Hda2p and Hda3p; Hda1p interacts with the Hda2p-Hda3p subcomplex to form an active tetramer; deletion increases histone H2B, H3 and H4 acetylation"	Verified	chr14:593228-595348	593228-595348	98.6%	94.65	93.22	92.26	72.66	80.79	98.00	93.93	82.46	89.39	0.35	0.33	0.37	0.12	0.12	Covered[5014]
YNL020C	ARK1	Serine/threonine protein kinase involved in regulation of the cortical actin cytoskeleton; involved in control of endocytosis	Verified	chr14:595624-597540	595624-597540	99.0%	135.94	147.00	132.77	89.57	108.54	75.87	141.47	111.17	92.20	0.52	0.45	0.38	-0.27	0.36	Frag<80[5015,5016]
YNL019C		Putative protein of unknown function	Uncharacterized	chr14:598377-599231	598377-599231	1.3%	0.00	0.00	89.55	0.00	89.55	0.00	0.00	44.78	44.78	0.00	0.18	0.19	0.00	1.20	
YNL018C		Putative protein of unknown function	Uncharacterized	chr14:599937-601775	599937-601775	18.1%	12.01	9.00	18.01	9.00	6.00	6.00	10.51	13.51	6.00	0.04	0.05	0.02	-1.17	0.17	
YNL017C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the tRNA ORF tI(AAU)N2"	Dubious	chr14:602139-602477	602139-602477	58.2%	40.57	5.07	5.07	0.00	0.00	40.57	22.82	2.54	20.29	0.08	0.01	0.08	3.00	0.15	Matched[5018]
YNL016W	PUB1	"Poly(A)+ RNA-binding protein, abundant mRNP-component protein that binds mRNA and is required for stability of a number of mRNAs; not reported to associate with polyribosomes"	Verified	chr14:602908-604269	602908-604269	98.1%	1283.60	1142.89	1146.64	1173.58	622.72	657.89	1213.25	1160.11	640.30	4.48	4.71	2.65	-0.86	-0.52	Matched[5019]
YNL015W	PBI2	"Cytosolic inhibitor of vacuolar proteinase B, required for efficient vacuole inheritance; with thioredoxin forms protein complex LMA1, which assists in priming SNARE molecules and promotes vacuole fusion"	Verified	chr14:605385-605612	605385-605612	98.5%	739.01	1166.39	801.34	885.92	7283.25	4126.88	952.70	843.63	5705.06	3.52	3.42	23.64	2.76	2.03	Matched[5021]
YNL014W	HEF3	Translational elongation factor EF-3; paralog of YEF3 and member of the ABC superfamily; stimulates EF-1 alpha-dependent binding of aminoacyl-tRNA by the ribosome; normally expressed in zinc deficient cells	Verified	chr14:606320-609454	606320-609454	97.2%	18.06	32.17	16.09	12.15	46.95	33.82	25.12	14.12	40.38	0.09	0.06	0.17	1.52	1.38	Covered/w/another[5022]
YNL013C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF HEF3/YNL014W"	Dubious	chr14:609134-609511	609134-609511	98.3%	59.23	64.62	51.16	24.23	107.70	40.39	61.93	37.69	74.04	0.23	0.15	0.31	0.97	0.14	Covered/w/another[5022]
YNL012W	SPO1	"Meiosis-specific protein with similarity to phospholipase B, required for meiotic spindle pole body duplication and separation; required for spore formation"	Verified	chr14:609687-611666	609687-609791,609876-611666	98.9%	27.73	37.33	33.06	27.19	74.12	57.59	32.53	30.13	65.85	0.12	0.12	0.27	1.13	1.08	Covered/w/another[5022]
YNL011C		Putative protein of unknown function; YNL011C is not an essential gene	Uncharacterized	chr14:611837-613171	611837-613171	99.1%	107.28	148.83	111.06	87.64	285.58	118.61	128.06	99.35	202.10	0.47	0.40	0.84	1.02	-0.22	Frag>80[5023,5024]
YNL010W		Putative protein of unknown function with similarity to phosphoserine phosphatases; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; homozygous diploid mutant shows an increase in glycogen accumulation	Uncharacterized	chr14:613636-614361	613636-614361	98.7%	1758.96	1839.93	1805.03	1705.91	992.55	893.44	1799.44	1755.47	943.00	6.64	7.13	3.91	-0.90	-0.91	Matched[5025]
YNL009W	IDP3	"Peroxisomal NADP-dependent isocitrate dehydrogenase, catalyzes oxidation of isocitrate to alpha-ketoglutarate with the formation of NADP(H+), required for growth on unsaturated fatty acids"	Verified	chr14:614822-616084	614822-616084	98.7%	29.67	32.88	34.49	36.89	69.77	66.56	31.28	35.69	68.17	0.12	0.14	0.28	0.93	1.09	Matched[5026]
YNL008C	ASI3	Putative integral membrane E3 ubiquitin ligase; acts with Asi1p and Asi2p to ensure the fidelity of SPS-sensor signalling by maintaining the dormant repressed state of gene expression in the absence of inducing signals	Verified	chr14:616212-618221	616212-618221	99.2%	115.91	145.01	111.39	93.83	130.96	89.82	130.46	102.61	110.39	0.48	0.42	0.46	0.11	0.23	Matched[5027]
YNL007C	SIS1	Type II HSP40 co-chaperone that interacts with the HSP70 protein Ssa1p; not functionally redundant with Ydj1p due to due to substrate specificity; shares similarity with bacterial DnaJ proteins	Verified	chr14:618509-619567	618509-619567	99.0%	1069.44	1150.53	1141.95	1376.63	13234.01	11524.43	1109.99	1259.29	12379.22	4.10	5.11	51.29	3.30	2.23	Frag>80[5028,5029,5030]
YNL006W	LST8	Protein required for the transport of amino acid permease Gap1p from the Golgi to the cell surface; component of the TOR signaling pathway; associates with both Tor1p and Tor2p; contains a WD-repeat	Verified	chr14:620069-620980	620069-620980	98.7%	184.32	200.98	169.89	172.11	3259.00	1708.89	192.65	171.00	2483.95	0.71	0.69	10.29	3.86	2.57	Frag>80[5030,5031,5032,5033]
YNL005C	MRP7	Mitochondrial ribosomal protein of the large subunit	Verified	chr14:621315-622430	621315-622430	99.3%	338.41	338.41	340.21	311.34	397.97	259.90	338.41	325.78	328.93	1.25	1.32	1.36	0.01	0.06	Matched[5034]
YNL004W	HRB1	"Poly(A+) RNA-binding protein, involved in the export of mRNAs from the nucleus to the cytoplasm; similar to Gbp2p and Npl3p"	Verified	chr14:622917-624623	622917-622946,623289-624623	98.3%	305.62	309.35	267.60	240.77	165.48	121.50	307.48	254.19	143.49	1.14	1.03	0.59	-0.82	-0.52	Covered/w/another[5035]
YNL003C	PET8	"S-adenosylmethionine transporter of the mitochondrial inner membrane, member of the mitochondrial carrier family; required for biotin biosynthesis and respiratory growth"	Verified	chr14:624977-625831	624977-625831	98.8%	161.00	217.83	200.07	174.02	280.57	189.41	189.41	187.05	234.99	0.70	0.76	0.97	0.33	-0.27	Covered/w/another[5035]
YNL002C	RLP7	Nucleolar protein with similarity to large ribosomal subunit L7 proteins; constituent of 66S pre-ribosomal particles; plays an essential role in processing of precursors to the large ribosomal subunit RNAs	Verified	chr14:626176-627144	626176-627144	99.3%	580.88	301.35	365.78	313.82	45.72	10.39	441.12	339.80	28.06	1.63	1.38	0.12	-3.60	-3.94	Frag>80[5036,5037]
YNL001W	DOM34	"Endoribonuclease; functions in no-go mRNA decay, protein translation to promote G1 progression and differentiation, required for meiotic cell division; similar to the eukaryotic Pelota"	Verified	chr14:627458-628618	627458-628618	98.8%	238.90	172.64	204.90	166.53	81.96	61.03	205.77	185.72	71.50	0.76	0.75	0.30	-1.38	-1.27	Matched[5038]
YNR001C	CIT1	"Citrate synthase, catalyzes the condensation of acetyl coenzyme A and oxaloacetate to form citrate; the rate-limiting enzyme of the TCA cycle; nuclear encoded mitochondrial protein"	Verified	chr14:629624-631063	629624-631063	99.0%	567.39	855.64	990.30	1192.99	2738.75	2626.53	711.51	1091.64	2682.64	2.63	4.43	11.12	1.30	1.68	Frag>80[5039,5040,5041]
YNR001W-A		Dubious open reading frame unlikely to encode a functional protein; identified by homology	Dubious	chr14:631265-631483	631265-631483	98.3%	0.00	4.64	0.00	0.00	4.64	18.58	2.32	0.00	11.61	0.01	0.00	0.05	Inf	0.81	Frag<80[5041]
YNR002C	ATO2	"Putative transmembrane protein involved in export of ammonia, a starvation signal that promotes cell death in aging colonies; phosphorylated in mitochondria; member of the TC 9.B.33 YaaH family; homolog of Ady2p and Y. lipolytica Gpr1p"	Verified	chr14:633010-633858	633010-633858	98.4%	41.91	69.45	43.11	68.25	238.29	142.49	55.68	55.68	190.39	0.21	0.23	0.79	1.77	1.63	Frag>80[5042,5043]
YNR003W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified gene RPC34/YNR003C"	Dubious	chr14:634422-634520	634422-634520	99.5%	264.07	203.13	213.29	182.82	50.78	40.63	233.60	198.05	45.70	0.86	0.80	0.19	-2.12	NaN	Covered/w/another[5044]
YNR003C	RPC34	RNA polymerase III subunit C34; interacts with TFIIIB70 and is a key determinant in pol III recruitment by the preinitiation complex	Verified	chr14:634346-635299	634346-635299	99.3%	219.49	155.12	135.07	110.80	47.49	30.60	187.30	122.93	39.04	0.69	0.50	0.16	-1.65	-1.44	Matched[5044]
YNR004W		Putative protein of unknown function; haploid disruptant exhibits slow growth rate on glucose-minimal medium at 15 C	Uncharacterized	chr14:635945-636385	635945-636385	98.7%	105.65	87.27	75.79	59.71	101.05	82.68	96.46	67.75	91.87	0.36	0.28	0.38	0.44	0.56	Matched[5046]
YNR006W	VPS27	"Endosomal protein that forms a complex with Hse1p; required for recycling Golgi proteins, forming lumenal membranes and sorting ubiquitinated proteins destined for degradation; has Ubiquitin Interaction Motifs which bind ubiquitin (Ubi4p)"	Verified	chr14:636988-638856	636988-638856	98.7%	125.72	123.01	167.45	124.64	167.99	139.81	124.36	146.04	153.90	0.46	0.59	0.64	0.08	0.86	Matched[5047]
YNR005C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr14:636933-637337	636933-637337	98.7%	62.53	62.53	77.54	77.54	57.53	77.54	62.53	77.54	67.54	0.23	0.31	0.28	-0.20	0.15	Covered/w/another[5047]
YNR007C	ATG3	"Protein involved in autophagy; E2-like enzyme that plays a role in formation of Atg8p-phosphatidylethanolamine conjugates, which are involved in membrane dynamics during autophagy"	Verified	chr14:639184-640116	639184-640116	99.4%	69.02	92.75	93.83	105.69	143.43	130.49	80.88	99.76	136.96	0.30	0.40	0.57	0.46	0.87	Matched[5048]
YNR008W	LRO1	Acyltransferase that catalyzes diacylglycerol esterification; one of several acyltransferases that contribute to triglyceride synthesis; putative homolog of human lecithin cholesterol acyltransferase	Verified	chr14:640398-642383	640398-642383	98.5%	161.09	213.26	167.74	149.84	145.75	144.22	187.18	158.79	144.98	0.69	0.64	0.60	-0.13	0.29	Covered/w/another[5049]
YNR009W	NRM1	Transcriptional co-repressor of MBF (MCB binding factor)-regulated gene expression; Nrm1p associates stably with promoters via MBF to repress transcription upon exit from G1 phase	Verified	chr14:642692-643441	642692-643441	98.9%	225.21	215.77	176.66	165.87	111.93	98.44	220.49	171.26	105.19	0.81	0.70	0.44	-0.70	-0.34	Covered/w/another[5049]
YNR010W	CSE2	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; component of the Med9/10 module; required for regulation of RNA polymerase II activity	Verified	chr14:643746-644195	643746-644195	99.0%	74.09	69.60	76.33	76.33	181.85	112.25	71.84	76.33	147.05	0.27	0.31	0.61	0.95	1.06	Covered/w/another[5049]
YNR011C	PRP2	"RNA-dependent ATPase in the DEAH-box family, required for activation of the spliceosome before the first transesterification step in RNA splicing"	Verified	chr14:644322-646952	644322-646952	99.3%	70.05	70.81	55.12	49.38	51.29	56.27	70.43	52.25	53.78	0.26	0.21	0.22	0.04	0.47	Covered/w/another[5049]
YNR012W	URK1	"Uridine/cytidine kinase, component of the pyrimidine ribonucleotide salvage pathway that converts uridine into UMP and cytidine into CMP; involved in the pyrimidine deoxyribonucleotide salvage pathway, converting deoxycytidine into dCMP"	Verified	chr14:647434-648939	647434-648939	98.9%	110.10	84.59	61.09	49.68	6.71	6.04	97.34	55.38	6.38	0.36	0.22	0.03	-3.12	-1.10	Matched[5050]
YNR013C	PHO91	"Low-affinity phosphate transporter of the vacuolar membrane; deletion of pho84, pho87, pho89, pho90, and pho91 causes synthetic lethality; transcription independent of Pi and Pho4p activity; overexpression results in vigorous growth"	Verified	chr14:649030-651714	649030-651714	98.6%	258.06	284.13	263.73	262.97	131.49	181.74	271.10	263.35	156.61	1.00	1.07	0.65	-0.75	0.20	Matched[5051]
YNR014W		"Putative protein of unknown function; expression is cell-cycle regulated, Azf1p-dependent, and heat-inducible"	Uncharacterized	chr14:652467-653105	652467-653105	98.8%	34.86	66.56	142.62	120.44	610.10	540.38	50.71	131.53	575.24	0.19	0.53	2.38	2.13	2.28	Frag>80[5052,5053]
YNR015W	SMM1	"Dihydrouridine synthase, member of a family of dihydrouridine synthases including Dus1p, Smm1p, Dus3p, and Dus4p; modifies uridine residues at position 20 of cytoplasmic tRNAs"	Verified	chr14:653389-654543	653389-654543	98.5%	134.50	83.51	125.71	70.33	39.56	25.49	109.01	98.02	32.53	0.40	0.40	0.13	-1.59	-1.23	Frag>80[5053,5054,5055,5056]
YNR016C	ACC1	"Acetyl-CoA carboxylase, biotin containing enzyme that catalyzes the carboxylation of acetyl-CoA to form malonyl-CoA; required for de novo biosynthesis of long-chain fatty acids"	Verified	chr14:654675-661376	654675-661376	98.9%	596.86	806.33	519.59	481.11	189.24	216.86	701.59	500.35	203.05	2.59	2.03	0.84	-1.30	-0.67	Frag<80[5055,5056,5057,5058]
YNR017W	TIM23	"Essential protein of the mitochondrial inner membrane, component of the mitochondrial import system"	Verified	chr14:662915-663583	662915-663583	98.4%	1063.09	1137.51	1037.27	946.15	583.18	441.94	1100.30	991.71	512.56	4.06	4.03	2.12	-0.95	-0.76	Covered/w/another[5060]
YNR018W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr14:664272-664946	664272-664946	98.3%	559.16	765.64	494.35	470.23	426.53	348.15	662.40	482.29	387.34	2.45	1.96	1.60	-0.32	-0.28	Covered/w/another[5060]
YNR019W	ARE2	"Acyl-CoA:sterol acyltransferase, isozyme of Are1p; endoplasmic reticulum enzyme that contributes the major sterol esterification activity in the presence of oxygen"	Verified	chr14:665341-667269	665341-667269	98.8%	96.06	146.45	99.21	109.18	184.24	297.10	121.25	104.19	240.67	0.45	0.42	1.00	1.21	1.92	Covered/w/another[5061]
YNR020C	ATP23	"Putative metalloprotease of the mitochondrial inner membrane, required for processing of Atp6p; has an additional role in assembly of the F0 sector of the F1F0 ATP synthase complex"	Verified	chr14:667412-668224	667412-668224	99.3%	158.58	121.41	147.43	131.32	121.41	91.68	140.00	139.38	106.55	0.52	0.57	0.44	-0.39	-0.60	Covered/w/another[5061]
YNR021W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; YNR021W is not an essential gene	Uncharacterized	chr14:668379-669593	668379-669593	99.0%	1087.88	1107.01	1058.77	1086.22	630.44	437.48	1097.45	1072.50	533.96	4.05	4.35	2.21	-1.01	-0.89	Matched[5062]
YNR022C	MRPL50	"Mitochondrial ribosomal protein of the large subunit, not essential for mitochondrial translation"	Verified	chr14:669776-670195	669776-670195	99.3%	515.38	534.56	551.34	443.47	699.96	441.07	524.97	497.40	570.52	1.94	2.02	2.36	0.20	-0.53	Matched[5063]
YNR023W	SNF12	73 kDa subunit of the SWI/SNF chromatin remodeling complex involved in transcriptional regulation; homolog of Rsc6p subunit of the RSC chromatin remodeling complex; deletion mutants are temperature-sensitive	Verified	chr14:670420-672120	670420-672120	98.8%	77.38	72.02	89.88	71.43	79.16	75.00	74.70	80.65	77.08	0.28	0.33	0.32	-0.07	0.33	Matched[5064]
YNR024W		"Protein of unknown function that may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the nucleus"	Verified	chr14:672411-672971	672411-672971	98.1%	208.89	172.56	150.76	90.82	87.19	21.80	190.72	120.79	54.49	0.70	0.49	0.23	-1.15	-1.54	Matched[5065]
YNR025C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data; deletion reduces expression of PIS1 gene encoding phosphatidylinositol synthase"	Dubious	chr14:672704-673063	672704-673063	98.2%	245.99	220.55	147.03	104.62	115.93	48.07	233.27	125.82	82.00	0.86	0.51	0.34	-0.62	-0.36	Matched[5065]
YNR026C	SEC12	"Guanine nucleotide exchange factor (GEF); glycosylated integral membrane protein of the endoplasmic reticulum, important for the initiation of transport vesicle budding from the endoplasmic reticulum through activation of the GTPase Sar1p"	Verified	chr14:673276-674691	673276-674691	99.1%	137.56	145.40	128.30	110.48	108.34	99.79	141.48	119.39	104.06	0.52	0.48	0.43	-0.20	0.18	Matched[5066]
YNR027W	BUD17	Protein involved in bud-site selection; diploid mutants display a random budding pattern instead of the wild-type bipolar pattern	Verified	chr14:674925-675878	674925-675878	98.5%	172.34	201.06	111.70	108.51	93.62	87.23	186.70	110.11	90.43	0.69	0.45	0.37	-0.28	-0.11	Covered/w/another[5067]
YNR028W	CPR8	"Peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; similarity to Cpr4p suggests a potential role in the secretory pathway"	Verified	chr14:676179-677105	676179-677105	98.7%	197.84	227.35	259.05	264.52	212.05	178.17	212.60	261.78	195.11	0.78	1.06	0.81	-0.42	0.00	Covered/w/another[5067]
YNR029C		"Putative protein of unknown function, deletion confers reduced fitness in saline"	Uncharacterized	chr14:677201-678490	677201-678490	99.2%	155.47	145.31	151.56	136.72	73.44	57.81	150.39	144.14	65.62	0.56	0.59	0.27	-1.14	-0.70	Covered/w/another[5067]
YNR030W	ALG12	"Alpha-1,6-mannosyltransferase localized to the ER; responsible for the addition of the alpha-1,6 mannose to dolichol-linked Man7GlcNAc2, acts in the dolichol pathway for N-glycosylation"	Verified	chr14:678801-680456	678801-680456	99.1%	277.29	275.46	283.39	301.06	243.77	257.79	276.38	292.22	250.78	1.02	1.19	1.04	-0.22	0.26	Covered/w/another[5067]
YNR031C	SSK2	"MAP kinase kinase kinase of the HOG1 mitogen-activated signaling pathway; interacts with Ssk1p, leading to autophosphorylation and activation of Ssk2p which phosphorylates Pbs2p; also mediates actin cytoskeleton recovery from osmotic stress"	Verified	chr14:680696-685435	680696-685435	99.2%	96.99	94.86	89.33	84.86	65.93	69.34	95.92	87.10	67.64	0.35	0.35	0.28	-0.36	0.15	Frag>80[5068]
YNR032W	PPG1	"Putative serine/threonine protein phosphatase, required for glycogen accumulation; interacts with Tap42p, which binds to and regulates other protein phosphatases"	Verified	chr14:686012-687118	686012-687118	98.6%	149.28	163.93	143.78	130.05	185.91	97.99	156.61	136.92	141.95	0.58	0.56	0.59	0.05	0.08	Matched[5069]
YNR032C-A	HUB1	"Ubiquitin-like protein modifier, may function in modification of Sph1p and Hbt1p, functionally complemented by the human or S. pombe ortholog; mechanism of Hub1p adduct formation not yet clear"	Verified	chr14:687245-687466	687245-687466	99.5%	393.96	276.23	285.28	212.83	624.91	362.26	335.09	249.06	493.58	1.24	1.01	2.05	0.99	-0.10	Matched[5070]
YNR033W	ABZ1	"Para-aminobenzoate (PABA) synthase, has similarity to Escherichia coli PABA synthase components PabA and PabB"	Verified	chr14:687637-690000	687637-690000	98.7%	113.61	89.17	99.03	93.03	188.21	192.07	101.39	96.03	190.14	0.37	0.39	0.79	0.99	1.39	Matched[5071]
YNR034W	SOL1	"Protein with a possible role in tRNA export; shows similarity to 6-phosphogluconolactonase non-catalytic domains but does not exhibit this enzymatic activity; homologous to Sol2p, Sol3p, and Sol4p"	Verified	chr14:690323-691288	690323-691288	98.5%	107.25	98.84	134.59	104.10	432.16	340.68	103.04	119.34	386.42	0.38	0.48	1.60	1.70	1.93	Matched[5072]
YNR034W-A		Putative protein of unknown function; expression is regulated by Msn2p/Msn4p	Uncharacterized	chr14:692563-692859	692563-692859	98.6%	180.99	1591.35	310.76	416.62	16091.07	8725.10	886.17	363.69	12408.08	3.27	1.48	51.41	5.09	2.66	Matched[5075]
YNR035C	ARC35	"Subunit of the ARP2/3 complex, which is required for the motility and integrity of cortical actin patches; required for cortical localization of calmodulin"	Verified	chr14:693021-694049	693021-694049	98.8%	677.57	802.46	726.74	684.45	1659.00	1244.99	740.01	705.59	1452.00	2.73	2.86	6.02	1.04	1.03	Matched[5076]
YNR036C		Mitochondrial protein; may interact with ribosomes based on co-purification experiments; similar to E. coli and human mitochondrial S12 ribosomal proteins	Verified	chr14:694363-694824	694363-694824	99.0%	806.78	843.95	1014.48	841.76	1394.92	892.05	825.36	928.12	1143.48	3.05	3.77	4.74	0.30	0.10	Matched[5077]
YNR037C	RSM19	"Mitochondrial ribosomal protein of the small subunit, has similarity to E. coli S19 ribosomal protein"	Verified	chr14:695054-695329	695054-695329	98.7%	440.70	514.15	521.50	440.70	716.14	433.36	477.43	481.10	574.75	1.76	1.95	2.38	0.26	0.06	Matched[5078]
YNR038W	DBP6	Essential protein involved in ribosome biogenesis; putative ATP-dependent RNA helicase of the DEAD-box protein family	Verified	chr14:695597-697486	695597-697486	99.0%	134.18	97.29	111.19	91.95	15.50	8.02	115.74	101.57	11.76	0.43	0.41	0.05	-3.11	-2.43	Covered/w/another[5079]
YNR039C	ZRG17	"Endoplasmic reticulum protein of unknown function, transcription is induced under conditions of zinc deficiency; mutant phenotype suggests a role in uptake of zinc"	Verified	chr14:697616-699433	697616-699433	98.8%	79.04	90.73	72.92	49.54	51.76	39.52	84.88	61.23	45.64	0.31	0.25	0.19	-0.42	0.20	Covered/w/another[5079]
YNR040W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr14:699692-700462	699692-700462	98.4%	89.62	105.43	134.42	101.48	127.83	68.53	97.52	117.95	98.18	0.36	0.48	0.41	-0.26	-0.05	Covered/w/another[5080]
YNR042W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps verified gene COQ2"	Dubious	chr14:701240-701668	701240-701668	98.9%	96.66	120.24	141.45	110.81	117.88	70.73	108.45	126.13	94.30	0.40	0.51	0.39	-0.42	-0.53	Covered/w/another[5080]
YNR041C	COQ2	"Para hydroxybenzoate: polyprenyl transferase, catalyzes the second step in ubiquinone (coenzyme Q) biosynthesis"	Verified	chr14:700543-701661	700543-701661	98.7%	162.93	162.93	182.84	153.88	152.06	80.56	162.93	168.36	116.31	0.60	0.68	0.48	-0.53	-0.48	Covered/w/another[5080]
YNR043W	MVD1	"Mevalonate pyrophosphate decarboxylase, essential enzyme involved in the biosynthesis of isoprenoids and sterols, including ergosterol; acts as a homodimer"	Verified	chr14:701897-703087	701897-703087	98.8%	463.07	402.75	429.09	414.64	181.83	172.48	432.91	421.87	177.16	1.60	1.71	0.73	-1.25	-0.65	Covered/w/another[5081]
YNR044W	AGA1	"Anchorage subunit of a-agglutinin of a-cells, highly O-glycosylated protein with N-terminal secretion signal and C-terminal signal for addition of GPI anchor to cell wall, linked to adhesion subunit Aga2p via two disulfide bonds"	Verified	chr14:703701-705878	703701-705878	92.9%	446.18	507.45	539.57	410.61	79.06	38.05	476.82	475.09	58.55	1.76	1.93	0.24	-3.02	-2.47	Covered/w/another[5081]
YNR045W	PET494	"Mitochondrial translational activator specific for the COX3 mRNA, acts together with Pet54p and Pet122p; located in the mitochondrial inner membrane"	Verified	chr14:706141-707610	706141-707610	98.6%	88.29	109.67	100.01	81.39	143.47	95.19	98.98	90.70	119.33	0.37	0.37	0.49	0.40	0.55	Covered/w/another[5081]
YNR046W	TRM112	"Subunit of an adoMet-dependent tRNA methyltransferase (MTase) complex (Trm11p-Trm112p), required for the methylation of the guanosine nucleotide at position 10 (m2G10) in tRNAs; putative zinc binding subunit of other MTase-related proteins"	Verified	chr14:707790-708197	707790-708197	98.5%	325.87	308.46	340.80	248.76	156.72	79.60	317.16	294.78	118.16	1.17	1.20	0.49	-1.32	-0.90	Covered/w/another[5081]
YNR047W		"Putative protein kinase that, when overexpressed, interferes with pheromone-induced growth arrest; localizes to the cytoplasm; potential Cdc28p substrate"	Uncharacterized	chr14:708525-711206	708525-711206	98.3%	71.28	105.78	98.95	97.06	117.53	203.97	88.53	98.00	160.75	0.33	0.40	0.67	0.71	1.44	Matched[5082]
YNR048W		"Protein proposed to interact with phospholipid translocases, shares similarity to Cdc50p"	Verified	chr14:711632-712813	711632-712813	98.9%	55.63	65.05	47.07	32.52	35.95	38.51	60.34	39.80	37.23	0.22	0.16	0.15	-0.10	-0.17	Matched[5084]
YNR049C	MSO1	"Probable component of the secretory vesicle docking complex, acts at a late step in secretion; shows genetic and physical interactions with Sec1p and is enriched in microsomal membrane fractions; required for sporulation"	Verified	chr14:713025-713657	713025-713657	98.8%	155.12	140.72	139.13	126.33	217.48	103.94	147.92	132.73	160.71	0.55	0.54	0.67	0.28	0.32	Matched[5085]
YNR050C	LYS9	"Saccharopine dehydrogenase (NADP+, L-glutamate-forming); catalyzes the formation of saccharopine from alpha-aminoadipate 6-semialdehyde, which is the seventh step in lysine biosynthesis pathway"	Verified	chr14:714050-715390	714050-715390	98.9%	603.66	548.64	576.52	510.21	266.03	222.32	576.15	543.36	244.18	2.13	2.21	1.01	-1.15	-0.44	Matched[5086]
YNR051C	BRE5	"Ubiquitin protease cofactor, forms deubiquitination complex with Ubp3p that coregulates anterograde and retrograde transport between the endoplasmic reticulum and Golgi compartments; null is sensitive to brefeldin A"	Verified	chr14:716782-718329	716782-718329	99.1%	1098.02	927.29	815.21	745.48	518.06	400.11	1012.65	780.34	459.08	3.74	3.17	1.90	-0.77	-0.45	Frag<80[5088]
YNR052C	POP2	"RNase of the DEDD superfamily, subunit of the Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation"	Verified	chr14:719348-720649	719348-720649	97.6%	258.15	253.43	267.59	280.97	214.07	154.26	255.79	274.28	184.17	0.94	1.11	0.76	-0.57	-0.47	Matched[5090]
YNR053C	NOG2	Putative GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation	Verified	chr14:721122-723113	721122-721772,722304-723113	99.2%	494.95	303.74	214.69	158.77	23.47	26.92	399.34	186.73	25.20	1.47	0.76	0.10	-2.89	-3.43	Matched[5091]
YNR054C	ESF2	"Essential nucleolar protein involved in pre-18S rRNA processing; component of the small subunit (SSU) processome; has sequence similarity to mABT1, a mouse transcription activator"	Verified	chr14:723357-724307	723357-724307	99.4%	190.51	150.29	161.93	125.95	13.76	14.82	170.40	143.94	14.29	0.63	0.58	0.06	-3.33	-2.81	Matched[5092]
YNR055C	HOL1	Putative ion transporter similar to the major facilitator superfamily of transporters; mutations in membrane-spanning domains permit nonselective cation uptake	Verified	chr14:728427-730187	728427-730187	98.8%	236.79	256.33	204.03	190.81	230.47	155.18	246.56	197.42	192.83	0.91	0.80	0.80	-0.03	0.14	Matched[5096]
YNR056C	BIO5	"Putative transmembrane protein involved in the biotin biosynthesis pathway; responsible for uptake of 7-keto 8-aminopelargonic acid; BIO5 is in a cluster of 3 genes (BIO3, BIO4, and BIO5) that mediate biotin synthesis"	Verified	chr14:731618-733303	731618-733303	98.8%	28.83	28.23	27.63	15.62	42.04	26.43	28.53	21.62	34.23	0.11	0.09	0.14	0.66	0.17	Covered/w/another[5097]
YNR057C	BIO4	"Dethiobiotin synthetase, catalyzes the third step in the biotin biosynthesis pathway; BIO4 is in a cluster of 3 genes (BIO3, BIO4, and BIO5) that mediate biotin synthesis; expression appears to be repressed at low iron levels"	Verified	chr14:733356-734069	733356-734069	99.0%	31.13	53.76	19.81	16.98	42.45	26.88	42.45	18.39	34.66	0.16	0.07	0.14	0.91	0.26	Covered/w/another[5097]
YNR058W	BIO3	"7,8-diamino-pelargonic acid aminotransferase (DAPA), catalyzes the second step in the biotin biosynthesis pathway; BIO3 is in a cluster of 3 genes (BIO3, BIO4, and BIO5) that mediate biotin synthesis"	Verified	chr14:734291-735733	734291-735733	98.7%	18.25	28.08	11.93	23.17	23.17	11.93	23.17	17.55	17.55	0.09	0.07	0.07	0.00	0.37	
YNR059W	MNT4	"Putative alpha-1,3-mannosyltransferase, not required for protein O-glycosylation"	Verified	chr14:736803-738545	736803-738545	98.8%	80.73	110.35	63.89	60.40	38.91	21.49	95.54	62.14	30.20	0.35	0.25	0.13	-1.04	-1.37	Matched[5099]
YNR060W	FRE4	"Ferric reductase, reduces a specific subset of siderophore-bound iron prior to uptake by transporters; expression induced by low iron levels"	Verified	chr14:739951-742110	739951-742110	98.9%	21.07	22.47	24.81	11.70	34.64	26.69	21.77	18.26	30.67	0.08	0.07	0.13	0.75	0.59	Frag>80[5100,5101]
YNR061C		Putative protein of unknown function	Uncharacterized	chr14:742881-743540	742881-743540	99.0%	373.28	302.91	310.56	273.84	234.06	113.21	338.09	292.20	173.64	1.25	1.19	0.72	-0.75	-0.84	Matched[5102]
YNR062C		Putative membrane protein of unknown function	Uncharacterized	chr14:744360-745343	744360-745343	98.8%	51.41	37.02	47.30	35.99	32.90	35.99	44.22	41.65	34.45	0.16	0.17	0.14	-0.27	-0.61	Covered[5103]
YNR063W		Putative zinc-cluster protein of unknown function	Uncharacterized	chr14:746943-748766	746943-748766	98.9%	19.40	19.95	9.42	6.10	6.10	0.55	19.67	7.76	3.32	0.07	0.03	0.01	-1.22	-0.79	
YNR064C		"Epoxide hydrolase, member of the alpha/beta hydrolase fold family; may have a role in detoxification of epoxides"	Verified	chr14:749136-750008	749136-750008	98.9%	30.11	20.84	33.58	16.21	25.48	13.90	25.48	24.90	19.69	0.09	0.10	0.08	-0.34	1.37	
YNR065C		Protein of unknown function; YNR065C is not an essential gene	Uncharacterized	chr14:750350-753700	750350-753700	51.8%	67.43	108.92	48.99	49.56	35.73	36.31	88.18	49.27	36.02	0.33	0.20	0.15	-0.45	-0.07	Frag<80[5104]
YNR066C		Putative membrane-localized protein of unknown function	Uncharacterized	chr14:753725-755035	753725-755035	95.5%	23.16	37.54	17.57	20.77	7.99	19.17	30.35	19.17	13.58	0.11	0.08	0.06	-0.50	-0.14	
YNR067C	DSE4	"Daughter cell-specific secreted protein with similarity to glucanases, degrades cell wall from the daughter side causing daughter to separate from mother"	Verified	chr14:755746-759099	755746-759099	98.9%	203.52	279.50	158.89	114.57	232.16	168.84	241.51	136.73	200.50	0.89	0.56	0.83	0.55	1.13	Covered/w/another[5105]
YNR068C		Putative protein of unknown function	Uncharacterized	chr14:760067-760885	760067-760885	99.2%	38.15	61.53	66.45	39.38	238.74	211.67	49.84	52.92	225.21	0.18	0.21	0.93	2.09	2.74	Covered/w/another[5105]
YNR069C	BSC5	"Protein of unknown function, ORF exhibits genomic organization compatible with a translational readthrough-dependent mode of expression"	Verified	chr14:761123-762592	761123-762592	99.0%	14.43	37.11	19.24	21.30	90.02	134.00	25.77	20.27	112.01	0.10	0.08	0.46	2.47	3.07	Covered/w/another[5105]
YNR070W		"Putative transporter of the ATP-binding cassette (ABC) family, implicated in pleiotropic drug resistance; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr14:765375-769376	765375-769376	98.9%	14.40	20.47	13.65	10.61	22.74	35.63	17.44	12.13	29.19	0.06	0.05	0.12	1.27	0.25	Frag>80[5106,5107]
YNR071C		Putative protein of unknown function	Uncharacterized	chr14:770440-771468	770440-771468	99.0%	16.69	17.67	12.76	9.82	16.69	7.85	17.18	11.29	12.27	0.06	0.05	0.05	0.12	-0.01	
YNR072W	HXT17	"Hexose transporter, up-regulated in media containing raffinose and galactose at pH 7.7 versus pH 4.7, repressed by high levels of glucose"	Verified	chr14:772657-774351	772657-774351	19.6%	27.04	27.04	24.04	21.03	30.05	21.03	27.04	22.53	25.54	0.10	0.09	0.11	0.18	0.04	
YNR073C		Putative mannitol dehydrogenase	Uncharacterized	chr14:774792-776300	774792-776300	8.5%	15.59	31.18	7.79	7.79	0.00	23.38	23.38	7.79	11.69	0.09	0.03	0.05	0.58	0.55	
YNR074C	AIF1	"Mitochondrial cell death effector that translocates to the nucleus in response to apoptotic stimuli, homolog of mammalian Apoptosis-Inducing Factor, putative reductase"	Verified	chr14:777602-778738	777602-778738	99.1%	112.66	114.43	120.64	109.11	103.78	72.74	113.54	114.87	88.26	0.42	0.47	0.37	-0.38	-0.54	Matched[5108]
YNR075W	COS10	"Protein of unknown function, member of the DUP380 subfamily of conserved, often subtelomerically-encoded proteins"	Verified	chr14:779916-781040	779916-781040	96.4%	46.11	113.44	30.43	27.67	16.60	18.45	79.78	29.05	17.52	0.29	0.12	0.07	-0.73	-0.32	
YNR075C-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr14:781511-781603	781511-781603	22.9%	375.73	469.67	93.93	93.93	46.97	93.93	422.70	93.93	70.45	1.56	0.38	0.29	-0.42	NaN	Matched[5109]
YNR076W	PAU6	"Part of 23-member seripauperin multigene family encoded mainly in subtelomeric regions, active during alcoholic fermentation, regulated by anaerobiosis, negatively regulated by oxygen, repressed by heme"	Verified	chr14:781918-782280	781918-782280	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.04	
YNR077C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr14:783287-783541	783287-783541	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.67	
YOL166W-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr15:585-740	585-740	48.5%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	NaN	
YOL166C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr15:1000-1338	1000-1338	39.6%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	-0.21	
YOL165C	AAD15	Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role	Verified	chr15:1647-2078	1647-2078	16.9%	0.00	0.00	0.00	27.44	0.00	0.00	0.00	13.72	0.00	0.00	0.06	0.00	-Inf	-1.33	
YOL164W-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr15:4130-4312	4130-4312	99.7%	32.90	21.93	49.35	16.45	71.28	21.93	27.42	32.90	46.61	0.10	0.13	0.19	0.50	NaN	Covered[5110]
YOL164W	BDS1	Bacterially-derived sulfatase required for use of alkyl- and aryl-sulfates as sulfur sources	Verified	chr15:6175-8115	6175-8115	98.5%	60.16	72.19	63.30	48.13	52.84	30.87	66.18	55.72	41.85	0.24	0.23	0.17	-0.41	-0.18	Matched[5111]
YOL163W		Putative protein of unknown function; member of the Dal5p subfamily of the major facilitator family	Uncharacterized	chr15:9596-10105	9596-10105	98.6%	7.96	9.95	21.88	9.95	19.89	19.89	8.95	15.91	19.89	0.03	0.06	0.08	0.32	1.07	
YOL162W		Putative protein of unknown function; member of the Dal5p subfamily of the major facilitator family	Uncharacterized	chr15:10118-10765	10118-10765	99.1%	6.23	6.23	10.90	7.79	29.60	14.02	6.23	9.35	21.81	0.02	0.04	0.09	1.22	0.98	
YOL161C		Hypothetical protein	Uncharacterized	chr15:11548-11910	11548-11910	11.6%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	0.11	
YOL160W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr15:14312-14653	14312-14653	98.8%	2.96	8.88	2.96	11.84	14.79	11.84	5.92	7.40	13.32	0.02	0.03	0.06	0.85	-0.03	Matched[5112]
YOL159C-A		Putative protein of unknown function; identified by sequence comparison with hemiascomycetous yeast species	Uncharacterized	chr15:15232-15504	15232-15504	99.4%	77.38	73.70	58.96	40.53	202.67	73.70	75.54	49.75	138.19	0.28	0.20	0.57	1.47	1.04	Covered[5113]
YOL159C		Soluble protein of unknown function; deletion mutants are viable and have elevated levels of Ty1 retrotransposition and Ty1 cDNA	Verified	chr15:17280-17795	17280-17795	99.1%	86.01	111.43	93.83	72.33	191.58	140.75	98.72	83.08	166.16	0.36	0.34	0.69	1.00	0.93	Frag>80[5114,5115]
YOL158C	ENB1	"Endosomal ferric enterobactin transporter, expressed under conditions of iron deprivation; member of the major facilitator superfamily; expression is regulated by Rcs1p and affected by chloroquine treatment"	Verified	chr15:19490-21310	19490-21310	98.7%	250.28	137.37	240.27	159.07	276.97	231.37	193.83	199.67	254.17	0.72	0.81	1.05	0.35	1.00	Frag>80[5116,5117]
YOL157C		Putative protein of unknown function	Uncharacterized	chr15:22524-24293	22524-24293	6.6%	17.10	8.55	34.20	8.55	17.10	17.10	12.83	21.38	17.10	0.05	0.09	0.07	-0.32	0.04	
YOL156W	HXT11	"Putative hexose transporter that is nearly identical to Hxt9p, has similarity to major facilitator superfamily (MFS) transporters and is involved in pleiotropic drug resistance"	Verified	chr15:25272-26975	25272-26975	11.7%	35.10	25.07	15.04	5.01	30.08	20.05	30.08	10.03	25.07	0.11	0.04	0.10	1.32	0.07	
YOL155W-A		Identified by expression profiling and mass spectrometry	Uncharacterized	chr15:27083-27217	27083-27217	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YOL155C	HPF1	Haze-protective mannoprotein that reduces the particle size of aggregated proteins in white wines	Verified	chr15:28702-31605	28702-31605	70.9%	386.49	711.79	327.74	364.64	331.13	625.37	549.14	346.19	478.25	2.03	1.41	1.98	0.47	0.14	Frag<80[5119,5120]
YOL154W	ZPS1	"Putative GPI-anchored protein; transcription is induced under low-zinc conditions, as mediated by the Zap1p transcription factor, and at alkaline pH"	Verified	chr15:34657-35406	34657-35406	99.0%	40.41	44.45	35.02	25.59	33.68	16.17	42.43	30.31	24.92	0.16	0.12	0.10	-0.28	0.17	
YOL152W	FRE7	Putative ferric reductase with similarity to Fre2p; expression induced by low copper levels	Verified	chr15:40747-42609	40747-42609	98.9%	31.48	12.49	34.74	16.83	24.97	13.03	21.98	25.78	19.00	0.08	0.10	0.08	-0.44	-0.32	
YOL151W	GRE2	"NADPH-dependent methylglyoxal reductase (D-lactaldehyde dehydrogenase); stress induced (osmotic, ionic, oxidative, heat shock and heavy metals); regulated by the HOG pathway"	Verified	chr15:43693-44721	43693-44721	98.7%	204.75	48.23	186.05	116.16	730.40	676.26	126.49	151.10	703.33	0.47	0.61	2.91	2.22	2.68	Matched[5124]
YOL150C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr15:44472-44783	44472-44783	99.0%	223.30	32.36	174.76	93.85	834.95	576.05	127.83	134.30	705.50	0.47	0.55	2.92	2.39	-0.37	Covered/w/another[5124]
YOL149W	DCP1	"Subunit of the Dcp1p-Dcp2p decapping enzyme complex, which removes the 5' cap structure from mRNAs prior to their degradation; enhances the activity of catalytic subunit Dcp2p; regulated by DEAD box protein Dhh1p"	Verified	chr15:44937-45632	44937-45632	98.8%	334.38	311.12	273.32	261.69	184.64	106.13	322.75	267.51	145.38	1.19	1.09	0.60	-0.88	-1.12	Covered/w/another[5125]
YOL148C	SPT20	"Subunit of the SAGA transcriptional regulatory complex, involved in maintaining the integrity of the complex"	Verified	chr15:45759-47573	45759-47573	99.2%	130.48	147.70	124.38	117.71	200.44	146.59	139.09	121.04	173.51	0.51	0.49	0.72	0.52	0.70	Covered/w/another[5125]
YOL147C	PEX11	"Peroxisomal membrane protein required for peroxisome proliferation and medium-chain fatty acid oxidation, most abundant protein in the peroxisomal membrane, regulated by Adr1p and Pip2p-Oaf1p, promoter contains ORE and UAS1-like elements"	Verified	chr15:47932-48642	47932-48642	98.8%	182.17	145.17	148.02	129.51	116.71	56.93	163.67	138.77	86.82	0.60	0.56	0.36	-0.68	-0.90	Frag>80[5126,5127]
YOL146W	PSF3	"Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p), which is localized to DNA replication origins and implicated in assembly of the DNA replication machinery"	Verified	chr15:48863-49447	48863-49447	98.9%	162.51	153.87	152.14	105.46	160.78	77.80	158.19	128.80	119.29	0.58	0.52	0.49	-0.11	-0.44	Covered/w/another[5128]
YOL145C	CTR9	"Component of the Paf1p complex, which is a large complex that binds to and modulates the activity of RNA polymerase II and is required for expression of a subset of genes, including cyclin genes; contains TPR repeats"	Verified	chr15:49554-52787	49554-52787	99.3%	236.64	211.42	220.13	212.04	122.37	114.58	224.03	216.09	118.47	0.83	0.88	0.49	-0.87	-0.42	Covered/w/another[5128]
YOL144W	NOP8	Nucleolar protein required for 60S ribosomal subunit biogenesis	Verified	chr15:53097-54551	53097-54551	97.7%	151.32	95.01	91.50	58.42	35.19	19.71	123.17	74.96	27.45	0.45	0.30	0.11	-1.45	-2.16	Matched[5129]
YOL143C	RIB4	"Lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, also known as DMRL synthase); catalyzes synthesis of immediate precursor to riboflavin"	Verified	chr15:54594-55103	54594-55103	98.6%	2431.21	2472.96	2488.86	2697.59	2709.52	2765.18	2452.08	2593.22	2737.35	9.05	10.53	11.34	0.08	0.19	Matched[5130]
YOL142W	RRP40	Protein involved in rRNA processing; component of the exosome 3->5 exonuclease complex	Verified	chr15:55557-56279	55557-56279	98.7%	179.32	152.71	162.51	119.08	88.26	49.03	166.01	140.80	68.65	0.61	0.57	0.28	-1.04	-1.20	Matched[5131]
YOL141W	PPM2	"Putative carboxymethyltransferase, similar to Ppm1p but biochemical activity not yet demonstrated; required for the synthesis of wybutosine, a modified guanosine found at the 3'-position adjacent to the anticodon of phe-tRNA"	Verified	chr15:56451-58538	56451-58538	98.9%	22.28	12.11	7.26	7.26	1.45	1.45	17.19	7.26	1.45	0.06	0.03	0.01	-2.32	-1.96	
YOL140W	ARG8	"Acetylornithine aminotransferase, catalyzes the fourth step in the biosynthesis of the arginine precursor ornithine"	Verified	chr15:58759-60030	58759-60030	98.7%	101.19	95.61	70.91	57.36	49.40	31.07	98.40	64.14	40.24	0.36	0.26	0.17	-0.67	-0.51	Matched[5132]
YOL139C	CDC33	Cytoplasmic mRNA cap binding protein; the eIF4E-cap complex is responsible for mediating cap-dependent mRNA translation via interactions with the translation initiation factor eIF4G (Tif4631p or Tif4632p)	Verified	chr15:60383-61024	60383-61024	99.1%	2308.24	1712.71	2107.11	1992.41	917.64	521.67	2010.48	2049.76	719.65	7.42	8.32	2.98	-1.51	-2.08	Frag>80[5133,5134]
YOL138C		"Putative protein of unknown function; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the vacuole"	Verified	chr15:61325-65350	61325-65350	98.5%	69.83	77.64	58.48	48.15	47.39	36.80	73.73	53.32	42.10	0.27	0.22	0.17	-0.34	-0.15	Matched[5135]
YOL137W	BSC6	Protein of unknown function containing 8 putative transmembrane seqments; ORF exhibits genomic organization compatible with a translational readthrough-dependent mode of expression	Verified	chr15:65621-67114	65621-67114	98.9%	94.78	108.32	64.32	55.52	60.26	37.91	101.55	59.92	49.08	0.37	0.24	0.20	-0.29	-0.58	Matched[5136]
YOL136C	PFK27	"6-phosphofructo-2-kinase, catalyzes synthesis of fructose-2,6-bisphosphate; inhibited by phosphoenolpyruvate and sn-glycerol 3-phosphate, expression induced by glucose and sucrose, transcriptional regulation involves protein kinase A"	Verified	chr15:67561-68754	67561-68754	99.0%	166.69	209.84	137.08	136.23	68.54	53.31	188.27	136.65	60.92	0.69	0.55	0.25	-1.17	-0.33	Matched[5137]
YOL135C	MED7	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation	Verified	chr15:69376-70044	69376-70044	98.9%	126.91	120.87	125.40	113.31	104.25	71.01	123.89	119.36	87.63	0.46	0.48	0.36	-0.45	0.22	Matched[5138]
YOL133W	HRT1	"RING finger containing subunit of Skp1-Cullin-F-box ubiquitin protein ligases (SCF); required for Gic2p, Far1p, Sic1p and Cln2p degradation; may tether Cdc34p (a ubiquitin conjugating enzyme or E2) and Cdc53p (a cullin) subunits of SCF"	Verified	chr15:70325-70690	70325-70690	98.4%	386.07	372.18	366.62	377.73	744.36	516.61	379.12	372.18	630.48	1.40	1.51	2.61	0.76	0.71	Matched[5139]
YOL134C		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data; partially overlaps HRT1, a verified gene that encodes an SCF ubiquitin ligase subunit"	Dubious	chr15:70156-70545	70156-70545	98.3%	247.77	279.07	229.52	252.99	539.88	310.37	263.42	241.25	425.12	0.97	0.98	1.76	0.82	0.01	Frag<80[5139]
YOL132W	GAS4	"1,3-beta-glucanosyltransferase, involved with Gas2p in spore wall assembly; has similarity to Gas1p; localizes to the cell wall"	Verified	chr15:71300-72715	71300-72715	98.7%	9.30	4.29	6.44	6.44	12.16	11.44	6.80	6.44	11.80	0.03	0.03	0.05	0.87	0.91	Frag<80[5140]
YOL131W		Putative protein of unknown function	Uncharacterized	chr15:73031-73357	73031-73357	98.5%	6.21	0.00	3.11	9.32	18.63	18.63	3.11	6.21	18.63	0.01	0.03	0.08	1.58	1.55	Overlap[5141]
YOL130W	ALR1	"Plasma membrane Mg(2+) transporter, expression and turnover are regulated by Mg(2+) concentration; overexpression confers increased tolerance to Al(3+) and Ga(3+) ions"	Verified	chr15:74400-76979	74400-76979	95.6%	190.10	156.86	169.83	135.38	98.09	114.30	173.48	152.60	106.19	0.64	0.62	0.44	-0.52	0.26	Covered[5141]
YOL129W	VPS68	Vacuolar membrane protein of unknown function involved in vacuolar protein sorting; also detected in the mitochondria	Verified	chr15:77560-78114	77560-78114	98.9%	887.27	1105.90	952.86	869.05	1741.74	1268.05	996.58	910.95	1504.90	3.68	3.70	6.24	0.72	0.53	Matched[5142]
YOL128C	YGK3	"Protein kinase related to mammalian glycogen synthase kinases of the GSK-3 family; GSK-3 homologs (Mck1p, Rim11p, Mrk1p, Ygk3p) are involved in control of Msn2p-dependent transcription of stress responsive genes and in protein degradation"	Verified	chr15:78352-79479	78352-79479	99.1%	33.09	28.62	32.20	17.89	17.89	13.42	30.86	25.04	15.65	0.11	0.10	0.06	-0.68	-0.81	Frag<80[5143]
YOL127W	RPL25	"Primary rRNA-binding ribosomal protein component of the large (60S) ribosomal subunit, has similarity to E. coli L23 and rat L23a ribosomal proteins; binds to 26S rRNA via a conserved C-terminal motif"	Verified	chr15:80348-81190	80348-80360,80775-81190	98.9%	12094.28	9173.84	10387.74	8855.63	3045.37	2109.61	10634.06	9621.69	2577.49	39.26	39.06	10.68	-1.90	-2.84	Matched[5144]
YOL126C	MDH2	"Cytoplasmic malate dehydrogenase, one of the three isozymes that catalyze interconversion of malate and oxaloacetate; involved in gluconeogenesis during growth on ethanol or acetate as carbon source; interacts with Pck1p and Fbp1p"	Verified	chr15:81787-82920	81787-82920	98.6%	590.10	624.97	641.06	683.98	473.87	484.60	607.53	662.52	479.23	2.24	2.69	1.99	-0.47	-0.17	Frag>80[5145,5146]
YOL125W	TRM13	2'-O-methyltransferase responsible for modification of tRNA at position 4; exhibits no obvious similarity to other known methyltransferases	Verified	chr15:83834-85264	83834-85264	98.6%	145.24	124.70	92.81	92.11	21.96	25.51	134.97	92.46	23.74	0.50	0.38	0.10	-1.96	-2.63	Covered/w/another[5147]
YOL124C	TRM11	"Catalytic subunit of an adoMet-dependent tRNA methyltransferase complex (Trm11p-Trm112p), required for the methylation of the guanosine nucleotide at position 10 (m2G10) in tRNAs; contains a THUMP domain and a methyltransferase domain"	Verified	chr15:85456-86757	85456-86757	99.3%	160.15	87.42	92.84	58.03	9.28	22.44	123.79	75.43	15.86	0.46	0.31	0.07	-2.25	-3.55	Covered/w/another[5147]
YOL123W	HRP1	"Subunit of cleavage factor I, a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences"	Verified	chr15:87844-89448	87844-89448	98.6%	838.37	623.57	617.25	502.26	165.53	212.91	730.97	559.76	189.22	2.70	2.27	0.78	-1.56	-0.47	Covered/w/another[5149]
YOL122C	SMF1	Divalent metal ion transporter with a broad specificity for di-valent and tri-valent metals; post-translationally regulated by levels of metal ions; member of the Nramp family of metal transport proteins	Verified	chr15:89692-91419	89692-91419	99.0%	221.56	287.03	206.36	180.05	232.08	154.33	254.29	193.20	193.20	0.94	0.78	0.80	0.00	0.24	Covered/w/another[5149]
YOL121C	RPS19A	"Protein component of the small (40S) ribosomal subunit, required for assembly and maturation of pre-40 S particles; mutations in human RPS19 are associated with Diamond Blackfan anemia; nearly identical to Rps19Bp"	Verified	chr15:92026-92850	92026-92440,92831-92850	60.7%	5249.17	3931.20	4646.99	3578.98	1071.80	840.78	4590.18	4112.99	956.29	16.94	16.70	3.96	-2.10	-2.31	Matched[5150]
YOL120C	RPL18A	"Protein component of the large (60S) ribosomal subunit, identical to Rpl18Bp and has similarity to rat L18 ribosomal protein; intron of RPL18A pre-mRNA forms stem-loop structures that are a target for Rnt1p cleavage leading to degradation"	Verified	chr15:93395-94402	93395-93843,94291-94402	45.9%	9235.85	7640.25	8106.11	6417.34	2212.88	1712.07	8438.05	7261.73	1962.47	31.15	29.48	8.13	-1.89	-2.96	Matched[5151]
YOL119C	MCH4	"Protein with similarity to mammalian monocarboxylate permeases, which are involved in transport of monocarboxylic acids across the plasma membrane; mutant is not deficient in monocarboxylate transport"	Verified	chr15:94856-96361	94856-96361	99.0%	102.62	185.12	85.18	83.84	137.50	107.98	143.87	84.51	122.74	0.53	0.34	0.51	0.54	0.92	Covered/w/another[5153]
YOL118C		"Dubious open reading frame, unlikely to encode a functional protein; based on available experimental and comparative sequence data"	Dubious	chr15:96608-96916	96608-96916	98.8%	16.37	65.48	22.92	26.19	62.21	78.58	40.93	24.56	70.40	0.15	0.10	0.29	1.52	1.16	Covered/w/another[5153]
YOL117W	RRI2	Subunit of the COP9 signalosome (CSN) complex that cleaves the ubiquitin-like protein Nedd8 from SCF ubiquitin ligases; plays a role in the mating pheromone response	Verified	chr15:97551-99488	97551-99488	98.7%	37.64	48.62	50.72	61.17	172.54	160.51	43.13	55.94	166.53	0.16	0.23	0.69	1.57	1.83	Covered/w/another[5154]
YOL116W	MSN1	"Transcriptional activator involved in regulation of invertase and glucoamylase expression, invasive growth and pseudohyphal differentiation, iron uptake, chromium accumulation, and response to osmotic stress; localizes to the nucleus"	Verified	chr15:99809-100957	99809-100957	98.7%	103.12	136.61	103.12	90.78	178.92	135.73	119.87	96.95	157.33	0.44	0.39	0.65	0.70	0.92	Covered/w/another[5154]
YOL115W	PAP2	"Catalytic subunit of TRAMP (Trf4/Pap2p-Mtr4p-Air1p/2p), a nuclear poly (A) polymerase complex involved in RNA quality control; catalyzes polyadenylation of unmodified tRNAs, and snoRNA and rRNA precursors; disputed role as a DNA polymerase"	Verified	chr15:101475-103229	101475-103229	98.6%	160.62	176.22	131.15	114.40	68.75	76.27	168.42	122.78	72.51	0.62	0.50	0.30	-0.76	-0.45	Covered/w/another[5154]
YOL114C		Putative protein of unknown function with similarity to human ICT1 and prokaryotic factors that may function in translation termination; YOL114C is not an essential gene	Uncharacterized	chr15:103317-103925	103317-103925	99.2%	38.08	43.05	39.74	34.77	105.97	36.43	40.57	37.26	71.20	0.15	0.15	0.30	0.93	0.74	Covered/w/another[5154]
YOL113W	SKM1	Member of the PAK family of serine/threonine protein kinases with similarity to Ste20p and Cla4p; proposed to be a downstream effector of Cdc42p during polarized growth	Verified	chr15:104326-106293	104326-106293	98.7%	93.69	84.43	89.06	80.82	204.89	126.12	89.06	84.94	165.50	0.33	0.34	0.69	0.96	1.14	Covered/w/another[5154]
YOL112W	MSB4	"GTPase-activating protein of the Ras superfamily that acts primarily on Sec4p, localizes to the bud site and bud tip, has similarity to Msb3p; msb3 msb4 double mutation causes defects in secretion and actin organization"	Verified	chr15:106710-108188	106710-108188	98.2%	217.52	198.94	173.47	170.03	114.96	70.90	208.23	171.75	92.93	0.77	0.70	0.39	-0.89	-0.51	Matched[5155]
YOL111C	MDY2	Protein required for efficient mating; involved in shmoo formation and nuclear migration in the pre-zygote; associates with ribosomes and interacts with YOR164C; contains a ubiquitin-like (UBL) domain	Verified	chr15:108258-108896	108258-108896	98.8%	358.14	397.76	393.00	297.92	446.88	350.21	377.95	345.46	398.55	1.40	1.40	1.65	0.21	0.52	Matched[5156]
YOL110W	SHR5	"Subunit of a palmitoyltransferase, composed of Shr5p and Erf2p, that adds a palmitoyl lipid moiety to heterolipidated substrates such as Ras1p and Ras2p through a thioester linkage; palmitoylation is required for Ras2p membrane localization"	Verified	chr15:109176-109889	109176-109889	98.1%	62.85	84.27	68.56	62.85	145.69	91.41	73.56	65.70	118.55	0.27	0.27	0.49	0.85	0.47	Matched[5157]
YOL109W	ZEO1	Peripheral membrane protein of the plasma membrane that interacts with Mid2p; regulates the cell integrity pathway mediated by Pkc1p and Slt2p; the authentic protein is detected in a phosphorylated state in highly purified mitochondria	Verified	chr15:110297-110638	110297-110638	98.2%	6681.40	5090.73	5653.72	4646.89	7995.04	4548.59	5886.06	5150.30	6271.81	21.73	20.91	25.99	0.28	-1.63	Matched[5158]
YOL108C	INO4	"Transcription factor required for derepression of inositol-choline-regulated genes involved in phospholipid synthesis; forms a complex, with Ino2p, that binds the inositol-choline-responsive element through a basic helix-loop-helix domain"	Verified	chr15:111431-111886	111431-111886	99.5%	132.19	163.04	132.19	138.80	180.67	134.40	147.62	135.50	157.53	0.54	0.55	0.65	0.22	0.05	Covered/w/another[5159]
YOL107W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and colocalizes in a punctate pattern with the early golgi/COPI vesicles; YOL107W is not an essential protein	Uncharacterized	chr15:112102-113130	112102-113130	99.3%	74.42	92.04	85.19	90.08	111.62	82.25	83.23	87.63	96.94	0.31	0.36	0.40	0.15	0.38	Covered/w/another[5159]
YOL106W		"Dubious open reading frame, unlikely to encode a functional protein; based on available experimental and comparative sequence data"	Dubious	chr15:113226-113579	113226-113579	48.9%	28.88	40.43	11.55	11.55	28.88	5.78	34.66	11.55	17.33	0.13	0.05	0.07	0.58	-0.56	Overlap[5159]
YOL105C	WSC3	"Partially redundant sensor-transducer of the stress-activated PKC1-MPK1 signaling pathway involved in maintenance of cell wall integrity; involved in the response to heat shock and other stressors; regulates 1,3-beta-glucan synthesis"	Verified	chr15:114138-115808	114138-115808	90.3%	139.90	237.36	135.92	107.41	143.21	86.86	188.63	121.66	115.03	0.70	0.49	0.48	-0.08	0.34	Covered/w/another[5160]
YOL104C	NDJ1	"Meiosis-specific telomere protein, required for bouquet formation, effective homolog pairing, ordered cross-over distribution (interference), sister chromatid cohesion at meiotic telomeres, and segregation of small chromosomes"	Verified	chr15:116396-117454	116396-117454	99.1%	68.61	176.29	52.41	39.07	72.42	53.36	122.45	45.74	62.89	0.45	0.19	0.26	0.46	0.93	Covered/w/another[5160]
YOL103W	ITR2	"Myo-inositol transporter with strong similarity to the major myo-inositol transporter Itr1p, member of the sugar transporter superfamily; expressed constitutively"	Verified	chr15:124001-125830	124001-125830	98.4%	389.11	355.81	329.72	308.07	193.72	167.08	372.46	318.89	180.40	1.37	1.29	0.75	-0.82	-0.58	Matched[5163]
YOL102C	TPT1	"tRNA 2'-phosphotransferase, catalyzes the final step in yeast tRNA splicing: the transfer of the 2'-PO(4) from the splice junction to NAD(+) to form ADP-ribose 1''-2''cyclic phosphate and nicotinamide"	Verified	chr15:125997-126689	125997-126689	99.2%	155.70	138.24	129.51	103.32	125.14	65.48	146.97	116.41	95.31	0.54	0.47	0.39	-0.29	-0.49	Matched[5164]
YOL101C	IZH4	"Membrane protein involved in zinc metabolism, member of the four-protein IZH family, expression induced by fatty acids and altered zinc levels; deletion reduces sensitivity to excess zinc; possible role in sterol metabolism"	Verified	chr15:126982-127920	126982-127920	99.1%	16.12	441.72	26.87	23.64	22.57	11.82	228.92	25.26	17.20	0.85	0.10	0.07	-0.55	-0.90	Frag<80[5165]
YOL100W	PKH2	"Serine/threonine protein kinase involved in sphingolipid-mediated signaling pathway that controls endocytosis; activates Ypk1p and Ykr2p, components of signaling cascade required for maintenance of cell wall integrity; redundant with Pkh1p"	Verified	chr15:129237-132482	129237-132482	98.9%	103.09	113.37	112.12	104.65	134.55	145.45	108.23	108.39	140.00	0.40	0.44	0.58	0.37	0.89	Matched[5166]
YOL099C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified gene PKH2/YOL100W; may interact with ribosomes"	Dubious	chr15:132017-132508	132017-132508	98.9%	176.70	203.41	162.31	152.04	328.74	205.46	190.05	157.18	267.10	0.70	0.64	1.11	0.76	0.34	Covered/w/another[5166]
YOL098C		Putative metalloprotease	Uncharacterized	chr15:132725-135838	132725-135838	99.1%	242.12	194.15	204.19	209.06	115.71	141.96	218.13	206.63	128.84	0.81	0.84	0.53	-0.68	0.16	Matched[5167]
YOL097W-A		Putative protein of unknown function; identified by expression profiling and mass spectrometry	Uncharacterized	chr15:136220-136405	136220-136405	98.6%	38.16	65.41	70.86	59.96	16.35	16.35	51.78	65.41	16.35	0.19	0.27	0.07	-2.00	NaN	Matched[5168]
YOL097C	WRS1	"Cytoplasmic tryptophanyl-tRNA synthetase, aminoacylates tryptophanyl-tRNA"	Verified	chr15:136527-137825	136527-137825	99.0%	863.75	702.82	757.24	721.48	284.55	232.46	783.28	739.36	258.50	2.89	3.00	1.07	-1.52	-0.89	Matched[5169]
YOL096C	COQ3	"O-methyltransferase, catalyzes two different O-methylation steps in ubiquinone (Coenzyme Q) biosynthesis; component of a mitochondrial ubiquinone-synthesizing complex"	Verified	chr15:138107-139045	138107-139045	99.3%	116.92	134.08	137.30	144.81	299.28	222.04	125.50	141.06	260.66	0.46	0.57	1.08	0.89	0.96	Frag>80[5170,5171]
YOL095C	HMI1	"Mitochondrial inner membrane localized ATP-dependent DNA helicase, required for the maintenance of the mitochondrial genome; not required for mitochondrial transcription; has homology to E. coli helicase uvrD"	Verified	chr15:139227-141347	139227-141347	99.2%	51.80	42.77	49.90	47.05	53.23	36.12	47.29	48.48	44.67	0.17	0.20	0.19	-0.12	0.06	Matched[5172]
YOL094C	RFC4	"Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon"	Verified	chr15:141584-142555	141584-142555	99.1%	169.24	132.90	118.36	132.90	77.87	66.45	151.07	125.63	72.16	0.56	0.51	0.30	-0.80	-0.37	Matched[5173]
YOL093W	TRM10	"tRNA methyltransferase, methylates the N-1 position of guanosine in tRNAs"	Verified	chr15:142815-143696	142815-143696	98.2%	184.79	160.54	177.86	135.13	38.11	34.65	172.67	156.50	36.38	0.64	0.64	0.15	-2.10	-1.60	Matched[5174]
YOL092W		Putative protein of unknown function; predicted to contain six transmembrane domains and is 58% similar to the uncharacterized ORF YBR147W; deletion mutant has no detectable phenotype	Uncharacterized	chr15:144204-145130	144204-145130	99.1%	532.37	502.97	489.91	474.67	120.84	56.61	517.67	482.29	88.73	1.91	1.96	0.37	-2.44	-1.98	Matched[5175]
YOL091W	SPO21	"Component of the meiotic outer plaque of the spindle pole body, involved in modifying the meiotic outer plaque that is required prior to prospore membrane formation"	Verified	chr15:145334-147163	145334-147163	99.0%	12.70	16.01	9.39	7.73	12.15	6.63	14.36	8.56	9.39	0.05	0.03	0.04	0.13	0.64	
YOL090W	MSH2	Protein that forms heterodimers with Msh3p and Msh6p that bind to DNA mismatches to initiate the mismatch repair process; contains a Walker ATP-binding motif required for repair activity; Msh2p-Msh6p binds to and hydrolyzes ATP	Verified	chr15:147382-150276	147382-150276	98.9%	167.72	148.51	160.04	143.61	159.34	143.96	158.12	151.83	151.65	0.58	0.62	0.63	-0.00	0.31	Matched[5176]
YOL089C	HAL9	Putative transcription factor containing a zinc finger; overexpression increases salt tolerance through increased expression of the ENA1 (Na+/Li+ extrusion pump) gene while gene disruption decreases both salt tolerance and ENA1 expression	Verified	chr15:150398-153490	150398-153490	99.1%	53.19	62.98	49.93	50.58	58.74	46.01	58.09	50.26	52.38	0.21	0.20	0.22	0.06	0.05	Matched[5177]
YOL088C	MPD2	"Member of the protein disulfide isomerase (PDI) family, exhibits chaperone activity; overexpression suppresses the lethality of a pdi1 deletion but does not complement all Pdi1p functions; undergoes oxidation by Ero1p"	Verified	chr15:153912-154745	153912-154745	99.1%	189.98	204.50	215.39	186.35	302.51	223.86	197.24	200.87	263.18	0.73	0.82	1.09	0.39	0.84	Frag>80[5178,5179]
YOL087C		"Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; deletion mutant is sensitive to various chemicals including phenanthroline, sanguinarine, and nordihydroguaiaretic acid"	Uncharacterized	chr15:155287-158637	155287-158637	99.1%	155.38	191.52	184.59	177.06	199.95	224.34	173.45	180.83	212.15	0.64	0.73	0.88	0.23	0.67	Frag>80[5180,5181]
YOL086W-A		Putative protein of unknown function; identified by homology	Uncharacterized	chr15:159173-159445	159173-159445	98.2%	175.37	175.37	220.15	190.30	395.52	272.39	175.37	205.22	333.96	0.65	0.83	1.38	0.70	-0.07	Covered[5182]
YOL086C	ADH1	"Alcohol dehydrogenase, fermentative isozyme active as homo- or heterotetramers; required for the reduction of acetaldehyde to ethanol, the last step in the glycolytic pathway"	Verified	chr15:159548-160594	159548-160594	73.9%	48105.91	52157.57	48777.53	44488.21	45307.07	33516.31	50131.74	46632.87	39411.69	185.06	189.29	163.30	-0.24	-1.91	Frag>80[5182,5183]
YOL085W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF YOL085C"	Dubious	chr15:161579-161791	161579-161791	98.9%	0.00	9.49	9.49	18.98	161.36	71.19	4.75	14.24	116.27	0.02	0.06	0.48	3.03	NaN	Covered/w/another[5184]
YOL085C		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data; partially overlaps the dubious gene YOL085W-A"	Dubious	chr15:161673-162014	161673-162014	98.8%	2.96	17.76	8.88	11.84	97.66	44.39	10.36	10.36	71.02	0.04	0.04	0.29	2.78	4.13	Covered/w/another[5184]
YOL084W	PHM7	"Protein of unknown function, expression is regulated by phosphate levels; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and vacuole"	Verified	chr15:162356-165331	162356-165331	98.7%	5.45	9.87	7.83	6.47	325.50	256.38	7.66	7.15	290.94	0.03	0.03	1.21	5.35	4.32	Frag>80[5185,5186,5187]
YOL083W		Hypothetical protein	Uncharacterized	chr15:165714-166952	165714-166952	98.8%	57.98	82.48	86.56	76.76	312.76	239.27	70.23	81.66	276.01	0.26	0.33	1.14	1.76	1.67	Frag>80[5188,5189]
YOL083C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; identified by expression profiling and mass spectrometry"	Dubious	chr15:166461-166601	166461-166601	98.6%	79.09	122.23	71.90	129.42	345.12	237.27	100.66	100.66	291.19	0.37	0.41	1.21	1.53	NaN	Covered/w/another[5188]
YOL082W	ATG19	"Protein involved in the cytoplasm-to-vacuole targeting pathway and in autophagy, recognizes cargo proteins and delivers them to the preautophagosomal structure for eventual engulfment by the autophagosome and degradation"	Verified	chr15:168727-169974	168727-169974	98.7%	245.94	351.46	288.15	315.75	605.52	594.97	298.70	301.95	600.24	1.10	1.23	2.49	0.99	1.39	Matched[5191]
YOL081W	IRA2	"GTPase-activating protein that negatively regulates RAS by converting it from the GTP- to the GDP-bound inactive form, required for reducing cAMP levels under nutrient limiting conditions, has similarity to Ira1p and human neurofibromin"	Verified	chr15:171070-180309	171070-180309	99.0%	82.61	95.07	82.40	79.01	247.30	468.37	88.84	80.70	357.83	0.33	0.33	1.48	2.15	1.96	Frag>80[5193,5194]
YOL079W		"Dubious open reading frame, unlikely to encode a functional protein; based on available experimental and comparative sequence data"	Dubious	chr15:181057-181455	181057-181455	99.4%	75.63	42.86	60.50	50.42	20.17	2.52	59.24	55.46	11.34	0.22	0.23	0.05	-2.29	0.01	Matched[5195]
YOL080C	REX4	Putative RNA exonuclease possibly involved in pre-rRNA processing and ribosome assembly	Verified	chr15:180558-181427	180558-181427	99.3%	111.12	63.66	68.29	54.40	11.58	1.16	87.39	61.35	6.37	0.32	0.25	0.03	-3.27	-2.32	Matched[5195]
YOL078W	AVO1	"Component of a membrane-bound complex containing the Tor2p kinase and other proteins, which may have a role in regulation of cell growth"	Verified	chr15:181682-185212	181682-185212	98.6%	57.42	57.42	38.47	44.50	31.29	34.16	57.42	41.49	32.73	0.21	0.17	0.14	-0.34	0.02	Frag>80[5196,5197]
YOL077W-A	ATP19	"Subunit k of the mitochondrial F1F0 ATP synthase, which is a large enzyme complex required for ATP synthesis; associated only with the dimeric form of ATP synthase"	Verified	chr15:185438-185644	185438-185644	98.5%	607.97	612.87	598.16	813.89	1328.70	632.48	610.42	706.03	980.59	2.25	2.87	4.06	0.47	-0.57	Matched[5197]
YOL077C	BRX1	"Nucleolar protein, constituent of 66S pre-ribosomal particles; depletion leads to defects in rRNA processing and a block in the assembly of large ribosomal subunits; possesses a sigma(70)-like RNA-binding motif"	Verified	chr15:185848-186723	185848-186723	99.2%	610.90	292.22	411.87	292.22	33.36	4.60	451.56	352.04	18.98	1.67	1.43	0.08	-4.21	-4.19	Matched[5198]
YOL076W	MDM20	"Non-catalytic subunit of the NatB N-terminal acetyltransferase, which catalyzes N-acetylation of proteins with specific N-terminal sequences; involved in mitochondrial inheritance and actin assembly"	Verified	chr15:187024-189414	187024-189414	99.0%	193.00	156.68	148.66	130.92	92.49	63.35	174.84	139.79	77.92	0.65	0.57	0.32	-0.84	-0.74	Matched[5199]
YOL075C		Putative ABC transporter	Uncharacterized	chr15:189658-193542	189658-193542	99.1%	42.84	63.61	35.31	30.38	36.87	52.19	53.23	32.84	44.53	0.20	0.13	0.18	0.44	0.30	Matched[5200]
YOL073C		Putative protein of unknown function	Uncharacterized	chr15:193832-194800	193832-194800	98.7%	112.90	171.44	174.57	172.48	280.15	209.07	142.17	173.53	244.61	0.52	0.70	1.01	0.50	0.81	Matched[5201]
YOL072W	THP1	"Nuclear pore-associated protein, forms a complex with Sac3p that is involved in transcription and in mRNA export from the nucleus; contains a PAM domain implicated in protein-protein binding"	Verified	chr15:194970-196337	194970-196337	98.9%	70.94	70.94	60.60	59.86	94.59	79.81	70.94	60.23	87.20	0.26	0.24	0.36	0.53	0.99	Matched[5202]
YOL071W	EMI5	"Non-essential protein of unknown function required for transcriptional induction of the early meiotic-specific transcription factor IME1, also required for sporulation"	Verified	chr15:196507-196995	196507-196995	98.4%	218.18	251.43	284.68	245.19	702.34	444.68	234.81	264.94	573.51	0.87	1.08	2.38	1.11	1.06	Matched[5203]
YOL070C		"Protein of unknown function; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, and bud neck; potential Cdc28p substrate"	Verified	chr15:197220-198725	197220-198725	99.0%	257.60	246.86	219.36	189.84	207.95	150.93	252.23	204.60	179.44	0.93	0.83	0.74	-0.19	0.07	Matched[5204]
YOL069W	NUF2	"Component of the evolutionarily conserved kinetochore-associated Ndc80 complex (Ndc80p-Nuf2p-Spc24p-Spc25p); involved in chromosome segregation, spindle checkpoint activity and kinetochore clustering"	Verified	chr15:198942-200297	198942-200297	98.8%	126.94	120.97	123.21	115.74	102.30	81.39	123.96	119.48	91.85	0.46	0.48	0.38	-0.38	-0.02	Matched[5205]
YOL068C	HST1	NAD(+)-dependent histone deacetylase; essential subunit of the Sum1p/Rfm1p/Hst1p complex required for ORC-dependent silencing and mitotic repression; non-essential subunit of the Set3C deacetylase complex; involved in telomere maintenance	Verified	chr15:200368-201879	200368-201879	99.1%	468.31	462.98	388.26	382.25	408.27	251.50	465.64	385.26	329.89	1.72	1.56	1.37	-0.22	-0.01	Matched[5206]
YOL067C	RTG1	"Transcription factor (bHLH) involved in interorganelle communication between mitochondria, peroxisomes, and nucleus"	Verified	chr15:201985-202518	201985-202518	98.9%	138.19	153.34	115.48	92.76	123.05	106.01	145.76	104.12	114.53	0.54	0.42	0.47	0.14	0.68	Covered/w/another[5206]
YOL066C	RIB2	"DRAP deaminase, catalyzes the third step of the riboflavin biosynthesis pathway; cytoplasmic tRNA pseudouridine synthase involved in pseudouridylation of cytoplasmic tRNAs at position 32"	Verified	chr15:202696-204471	202696-204471	99.1%	146.64	127.88	102.87	85.82	119.92	120.49	137.26	94.35	120.21	0.51	0.38	0.50	0.35	0.83	Covered/w/another[5207]
YOL065C	INP54	"Phosphatidylinositol 4,5-bisphosphate 5-phosphatase with a role in secretion, localizes to the endoplasmic reticulum via the C-terminal tail; lacks the Sac1 domain and proline-rich region found in the other 3 INP proteins"	Verified	chr15:204731-205885	204731-205885	99.2%	107.36	140.52	108.23	93.39	184.17	166.71	123.94	100.81	175.44	0.46	0.41	0.73	0.80	1.05	Covered/w/another[5207]
YOL064C	MET22	"Bisphosphate-3'-nucleotidase, involved in salt tolerance and methionine biogenesis; dephosphorylates 3'-phosphoadenosine-5'-phosphate and 3'-phosphoadenosine-5'-phosphosulfate, intermediates of the sulfate assimilation pathway"	Verified	chr15:206103-207176	206103-207176	99.1%	339.10	461.21	357.89	304.34	259.26	154.05	400.16	331.12	206.65	1.48	1.34	0.86	-0.68	-0.50	Matched[5208]
YOL063C	CRT10	Protein involved in transcriptional regulation of RNR2 and RNR3; expression of the gene is induced by DNA damage and null mutations confer increased resistance to hydroxyurea; N-terminal region has a leucine repeat and a WD40 repeat	Verified	chr15:207392-210265	207392-210265	99.1%	73.05	74.81	72.35	68.84	91.67	84.99	73.93	70.59	88.33	0.27	0.29	0.37	0.32	0.88	Frag>80[5209]
YOL062C	APM4	Mu2-like subunit of the clathrin associated protein complex (AP-2); involved in vesicle transport	Verified	chr15:210520-211995	210520-211995	99.1%	230.41	242.72	234.52	194.18	216.06	149.05	236.57	214.35	182.55	0.87	0.87	0.76	-0.23	-0.07	Matched[5210]
YOL061W	PRS5	"5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of five related enzymes, which are active as heteromultimeric complexes"	Verified	chr15:212244-213734	212244-213734	98.7%	521.89	394.13	441.02	370.35	135.91	113.48	458.01	405.69	124.70	1.69	1.65	0.52	-1.70	-1.20	Covered/w/another[5211]
YOL060C	MAM3	"Protein required for normal mitochondrial morphology, has similarity to hemolysins"	Verified	chr15:214017-216137	214017-216137	98.7%	189.25	226.52	261.89	204.54	288.17	302.99	207.89	233.21	295.58	0.77	0.95	1.22	0.34	1.63	Covered/w/another[5211]
YOL059W	GPD2	"NAD-dependent glycerol 3-phosphate dehydrogenase, homolog of Gpd1p, expression is controlled by an oxygen-independent signaling pathway required to regulate metabolism under anoxic conditions; located in cytosol and mitochondria"	Verified	chr15:217126-218448	217126-218448	98.6%	347.28	431.61	354.95	348.05	394.05	430.84	389.45	351.50	412.44	1.44	1.43	1.71	0.23	0.92	Covered/w/another[5211]
YOL058W	ARG1	"Arginosuccinate synthetase, catalyzes the formation of L-argininosuccinate from citrulline and L-aspartate in the arginine biosynthesis pathway; potential Cdc28p substrate"	Verified	chr15:219210-220472	219210-220472	98.7%	87.44	557.51	80.22	99.47	70.59	49.73	322.47	89.84	60.16	1.19	0.36	0.25	-0.58	-1.31	Matched[5212]
YOL057W		Putative metalloprotease	Uncharacterized	chr15:220766-222901	220766-222901	98.8%	262.86	259.55	266.18	231.13	236.81	224.97	261.20	248.65	230.89	0.96	1.01	0.96	-0.11	0.40	Matched[5213]
YOL056W	GPM3	"Homolog of Gpm1p phosphoglycerate mutase, which converts 3-phosphoglycerate to 2-phosphoglycerate in glycolysis; may be non-functional derivative of a gene duplication event"	Verified	chr15:223267-224178	223267-224178	98.5%	160.22	196.94	179.14	180.25	120.17	72.32	178.58	179.69	96.24	0.66	0.73	0.40	-0.90	-0.77	Matched[5214]
YOL055C	THI20	Multifunctional protein with both hydroxymethylpyrimidine kinase and thiaminase activities; involved in thiamine biosynthesis and also in thiamine degradation; member of a gene family with THI21 and THI22; functionally redundant with Thi21p	Verified	chr15:224419-226074	224419-226074	96.7%	58.06	61.18	55.57	50.57	136.73	66.80	59.62	53.07	101.77	0.22	0.22	0.42	0.94	1.15	Matched[5215]
YOL054W	PSH1	"Nuclear protein, putative RNA polymerase II elongation factor; isolated as Pob3p/Spt16p-binding protein"	Uncharacterized	chr15:228613-229833	228613-229833	98.1%	81.83	64.30	59.29	47.60	26.72	33.40	73.06	53.44	30.06	0.27	0.22	0.12	-0.83	-0.60	Matched[5217]
YOL053W		Putative protein of unknown function; YOL053W is not an essential gene	Uncharacterized	chr15:230084-231271	230084-231271	98.5%	99.16	92.32	134.21	147.03	237.65	134.21	95.74	140.62	185.93	0.35	0.57	0.77	0.40	0.41	Matched[5218]
YOL052C-A	DDR2	"Multistress response protein, expression is activated by a variety of xenobiotic agents and environmental or physiological stresses"	Verified	chr15:231569-231754	231569-231754	98.2%	54.74	273.72	202.55	251.82	12925.18	7500.00	164.23	227.19	10212.59	0.61	0.92	42.31	5.49	3.61	Matched[5219]
YOL052C	SPE2	"S-adenosylmethionine decarboxylase, required for the biosynthesis of spermidine and spermine; cells lacking Spe2p require spermine or spermidine for growth in the presence of oxygen but not when grown anaerobically"	Verified	chr15:232445-233635	232445-233635	98.7%	177.83	149.75	159.11	134.43	65.52	57.01	163.79	146.77	61.26	0.60	0.60	0.25	-1.26	-0.61	Matched[5220]
YOL051W	GAL11	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; affects transcription by acting as target of activators and repressors	Verified	chr15:234939-238184	234939-238184	96.3%	192.68	180.84	186.28	158.43	114.58	132.19	186.76	172.36	123.39	0.69	0.70	0.51	-0.48	0.14	Matched[5221]
YOL050C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps verified gene GAL11; deletion confers sensitivity to 4-(N-(S-glutathionylacetyl)amino) phenylarsenoxide (GSAO)"	Dubious	chr15:237881-238201	237881-238201	98.8%	290.22	302.84	302.84	170.35	246.06	126.18	296.53	236.59	186.12	1.09	0.96	0.77	-0.35	0.25	Covered/w/another[5221]
YOL049W	GSH2	"Glutathione synthetase, catalyzes the ATP-dependent synthesis of glutathione (GSH) from gamma-glutamylcysteine and glycine; induced by oxidative stress and heat shock"	Verified	chr15:238618-240093	238618-240093	98.8%	426.02	407.50	400.64	407.50	404.76	334.78	416.76	404.07	369.77	1.54	1.64	1.53	-0.13	0.31	Matched[5222]
YOL048C		Putative protein of unknown function	Uncharacterized	chr15:240203-241309	240203-240946,241025-241309	99.1%	161.82	228.52	224.59	244.21	711.05	360.92	195.17	234.40	535.98	0.72	0.95	2.22	1.19	0.94	Matched[5223]
YOL047C		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern	Uncharacterized	chr15:241613-242746	241613-242440,242504-242746	98.5%	15.17	16.12	20.86	26.55	391.61	231.36	15.65	23.71	311.49	0.06	0.10	1.29	3.72	1.10	Frag>80[5224,5225]
YOL045W	PSK2	"One of two (see also PSK1) PAS domain containing S/T protein kinases; regulates sugar flux and translation in response to an unknown metabolite by phosphorylating Ugp1p and Gsy2p (sugar flux) and Caf20p, Tif11p and Sro9p (translation)"	Verified	chr15:243496-246801	243496-246801	98.7%	114.96	78.79	87.68	78.48	67.44	80.62	96.87	83.08	74.03	0.36	0.34	0.31	-0.17	0.28	Matched[5226]
YOL046C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data;almost completely overlaps the verified gene PSK2/YOL045W"	Dubious	chr15:243465-244139	243465-244139	99.0%	80.77	38.89	65.81	62.82	20.94	50.85	59.83	64.32	35.90	0.22	0.26	0.15	-0.84	0.08	Covered/w/another[5226]
YOL044W	PEX15	"Phosphorylated tail-anchored type II integral peroxisomal membrane protein required for peroxisome biogenesis, cells lacking Pex15p mislocalize peroxisomal matrix proteins to cytosol, overexpression results in impaired peroxisome assembly"	Verified	chr15:247149-248300	247149-248300	99.0%	67.54	69.30	56.14	48.25	60.53	36.84	68.42	52.19	48.68	0.25	0.21	0.20	-0.10	0.33	Covered/w/another[5227]
YOL043C	NTG2	"DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase involved in base excision repair, localizes to the nucleus"	Verified	chr15:248391-249533	248391-249533	99.3%	60.82	87.26	74.92	65.22	104.89	57.29	74.04	70.07	81.09	0.27	0.28	0.34	0.21	0.47	Covered/w/another[5227]
YOL042W	NGL1	"Putative endonuclease, has a domain similar to a magnesium-dependent endonuclease motif in mRNA deadenylase Ccr4p; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr15:249824-250915	249824-250915	98.8%	91.73	113.96	102.85	79.68	145.47	104.70	102.85	91.26	125.08	0.38	0.37	0.52	0.45	0.09	Matched[5228]
YOL041C	NOP12	"Nucleolar protein, required for pre-25S rRNA processing; contains an RNA recognition motif (RRM) and has similarity to Nop13p, Nsr1p, and putative orthologs in Drosophila and S. pombe"	Verified	chr15:251266-252645	251266-252645	99.3%	375.67	215.92	253.85	193.31	26.99	9.48	295.80	223.58	18.24	1.09	0.91	0.08	-3.62	-3.72	Matched[5229]
YOL040C	RPS15	Protein component of the small (40S) ribosomal subunit; has similarity to E. coli S19 and rat S15 ribosomal proteins	Verified	chr15:253148-253576	253148-253576	98.8%	11061.85	9749.63	10257.06	8557.77	2832.14	2258.63	10405.74	9407.41	2545.38	38.41	38.19	10.55	-1.89	-3.21	Matched[5230]
YOL039W	RPP2A	"Ribosomal protein P2 alpha, a component of the ribosomal stalk, which is involved in the interaction between translational elongation factors and the ribosome; regulates the accumulation of P1 (Rpp1Ap and Rpp1Bp) in the cytoplasm"	Verified	chr15:254296-254616	254296-254616	89.9%	7305.70	6172.42	6622.96	5437.69	2190.32	1822.96	6739.06	6030.33	2006.64	24.88	24.48	8.31	-1.59	-2.06	Matched[5231]
YOL038C-A		Putative protein of unknown function; identified by SAGE analysis	Uncharacterized	chr15:254925-255020	254925-255020	99.3%	41.94	31.45	94.36	83.88	346.00	262.12	36.70	89.12	304.06	0.14	0.36	1.26	1.77	NaN	Matched[5232]
YOL038W	PRE6	20S proteasome alpha-type subunit; green fluorescent protein (GFP)-fusion protein relocates from the cytosol to the mitochondrial outer surface upon oxidative stress	Verified	chr15:255336-256100	255336-256100	98.2%	956.81	823.73	884.95	855.67	1706.02	1113.83	890.27	870.31	1409.93	3.29	3.53	5.84	0.70	0.53	Matched[5233]
YOL036W		Protein of unknown function; potential Cdc28p substrate	Uncharacterized	chr15:256744-259029	256744-259029	98.7%	179.97	185.29	156.92	143.18	213.66	223.86	182.63	150.05	218.76	0.67	0.61	0.91	0.54	0.93	Matched[5234]
YOL037C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YOL036W"	Dubious	chr15:256665-257018	256665-257018	98.7%	120.23	120.23	91.60	88.74	131.68	151.72	120.23	90.17	141.70	0.44	0.37	0.59	0.65	0.12	Covered/w/another[5234]
YOL035C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr15:258802-259104	258802-259104	98.6%	254.43	261.12	190.82	227.65	448.60	237.69	257.78	209.23	343.14	0.95	0.85	1.42	0.71	0.52	Covered/w/another[5234]
YOL034W	SMC5	Structural maintenance of chromosomes (SMC) protein; essential subunit of the Mms21-Smc5-Smc6 complex; required for growth and DNA repair; S. pombe homolog forms a heterodimer with S. pombe Rad18p that is involved in DNA repair	Verified	chr15:259924-263205	259924-263205	98.6%	57.48	50.99	39.87	30.91	30.60	24.42	54.24	35.39	27.51	0.20	0.14	0.11	-0.36	0.49	Matched[5236]
YOL033W	MSE1	"Mitochondrial glutamyl-tRNA synthetase, encoded by a nuclear gene"	Verified	chr15:263476-265086	263476-265086	98.6%	89.38	88.12	69.87	78.05	107.01	67.35	88.75	73.96	87.18	0.33	0.30	0.36	0.24	0.11	Matched[5237]
YOL032W	OPI10	"Protein with a possible role in phospholipid biosynthesis, based on inositol-excreting phenotype of the null mutant and its suppression by exogenous choline"	Verified	chr15:265430-266170	265430-266170	98.6%	68.45	78.04	98.57	86.25	1192.47	848.83	73.25	92.41	1020.65	0.27	0.38	4.23	3.47	3.13	Matched[5238]
YOL031C	SIL1	"Nucleotide exchange factor for the endoplasmic reticulum (ER) lumenal Hsp70 chaperone Kar2p, required for protein translocation into the ER; homolog of Yarrowia lipolytica SLS1; GrpE-like protein"	Verified	chr15:266265-267530	266265-267530	99.1%	210.41	180.92	187.29	155.41	321.19	197.66	195.66	171.35	259.42	0.72	0.70	1.07	0.60	0.86	Matched[5239]
YOL030W	GAS5	"1,3-beta-glucanosyltransferase, has similarity to Gas1p; localizes to the cell wall"	Verified	chr15:268188-269642	268188-269642	99.0%	1033.39	1397.30	1084.09	1097.98	659.76	573.64	1215.35	1091.04	616.70	4.49	4.43	2.56	-0.82	-0.21	Matched[5240]
YOL029C		Putative protein of unknown function; identified as interacting with Hsc82p and Hsp82p in high-throughput two-hybrid screens	Uncharacterized	chr15:269816-270421	269816-270421	99.2%	231.31	194.70	169.74	128.14	148.11	64.90	213.01	148.94	106.50	0.79	0.60	0.44	-0.48	-0.31	Covered/w/another[5241]
YOL028C	YAP7	Putative basic leucine zipper (bZIP) transcription factor	Verified	chr15:270634-271371	270634-271371	99.2%	147.54	139.34	103.83	102.46	56.01	60.11	143.44	103.14	58.06	0.53	0.42	0.24	-0.83	-0.21	Covered/w/another[5241]
YOL027C	MDM38	"Mitochondrial inner membrane protein, involved in membrane integration of a subset of mitochondrial proteins; required for K+/H+ exchange; associates with mitochondrial ribosomes; human ortholog Letm1 implicated in Wolf-Hirschhorn syndrome"	Verified	chr15:272004-273725	272004-273725	99.0%	441.14	475.17	352.56	370.75	251.66	252.25	458.15	361.65	251.96	1.69	1.47	1.04	-0.52	-0.12	Frag>80[5242,5243]
YOL026C	MIM1	"Mitochondrial outer membrane protein, required for assembly of the translocase of the outer membrane (TOM) complex and thereby for mitochondrial protein import; N terminus is exposed to the cytosol: transmembrane segment is highly conserved"	Verified	chr15:274013-274354	274013-274354	98.7%	429.74	533.47	346.75	403.06	817.98	654.98	481.60	374.91	736.48	1.78	1.52	3.05	0.97	0.65	Matched[5244]
YOL025W	LAG2	Protein involved in determination of longevity; LAG2 gene is preferentially expressed in young cells; overexpression extends the mean and maximum life span of cells	Verified	chr15:274958-276940	274958-276940	99.0%	42.77	53.47	45.32	39.72	89.11	77.91	48.12	42.52	83.51	0.18	0.17	0.35	0.97	1.27	Matched[5245]
YOL024W		"Putative protein of unknown function, predicted to have thiol-disulfide oxidoreductase active site"	Uncharacterized	chr15:277087-277605	277087-277605	98.9%	3.89	11.68	3.89	3.89	1.95	1.95	7.79	3.89	1.95	0.03	0.02	0.01	-1.00	-0.41	Overlap[5245]
YOL023W	IFM1	Mitochondrial translation initiation factor 2	Verified	chr15:278057-280087	278057-280087	98.8%	84.75	79.77	75.28	78.27	100.21	96.72	82.26	76.78	98.46	0.30	0.31	0.41	0.36	0.63	Matched[5246]
YOL022C		"Cytoplasmic protein of unknown function; essential gene in S288C, and non-essential with reduced growth rate in CEN.PK2"	Uncharacterized	chr15:280273-281499	280273-281499	99.2%	225.96	151.19	160.22	119.96	40.26	8.22	188.57	140.09	24.24	0.70	0.57	0.10	-2.53	-2.10	Matched[5247]
YOL021C	DIS3	"Catalytic component of the exosome, involved in RNA processing and degradation; binds Gsp1p/Ran and enhances the GEF activity of Srm1p; implicated in mitotic control; homologous to the E. coli RNase R of the RNase II family"	Verified	chr15:282422-285427	282422-285427	99.0%	174.36	137.07	134.71	129.00	45.69	48.38	155.71	131.86	47.03	0.57	0.54	0.19	-1.49	-0.71	Matched[5248]
YOL020W	TAT2	"High affinity tryptophan and tyrosine permease, overexpression confers FK506 resistance"	Verified	chr15:286173-287951	286173-287951	98.7%	218.66	214.68	229.48	174.25	154.32	100.79	216.67	201.86	127.55	0.80	0.82	0.53	-0.66	-0.57	Frag>80[5249,5250]
YOL019W-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr15:288421-288573	288421-288573	98.1%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	NaN	
YOL019W		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and vacuole	Uncharacterized	chr15:288899-290554	288899-290554	98.8%	156.46	124.68	161.96	121.62	44.00	24.45	140.57	141.79	34.22	0.52	0.58	0.14	-2.05	-1.02	Covered/w/another[5251]
YOL018C	TLG2	"Syntaxin-like t-SNARE that forms a complex with Tlg1p and Vti1p and mediates fusion of endosome-derived vesicles with the late Golgi; binds Vps45p, which prevents Tlg2p degradation and also facilitates t-SNARE complex formation"	Verified	chr15:290882-292075	290882-292075	99.4%	134.78	160.89	143.20	143.20	139.83	92.66	147.84	143.20	116.25	0.55	0.58	0.48	-0.30	-0.09	Covered/w/another[5251]
YOL017W	ESC8	"Protein involved in telomeric and mating-type locus silencing, interacts with Sir2p and also interacts with the Gal11p, which is a component of the RNA pol II mediator complex"	Verified	chr15:292530-294674	292530-294674	98.6%	64.30	55.32	46.81	35.93	28.37	15.13	59.81	41.37	21.75	0.22	0.17	0.09	-0.93	-0.44	Matched[5252]
YOL016C	CMK2	"Calmodulin-dependent protein kinase; may play a role in stress response, many CA++/calmodulan dependent phosphorylation substrates demonstrated in vitro, amino acid sequence similar to Cmk1p and mammalian Cam Kinase II"	Verified	chr15:294778-296121	294778-296121	99.3%	186.63	233.10	203.12	218.86	652.84	527.67	209.87	210.99	590.26	0.77	0.86	2.45	1.48	1.84	Frag>80[5253,5254]
YOL015W		Hypothetical protein; null mutant displays increased levels of spontaneous Rad52 foci	Uncharacterized	chr15:297079-298839	297079-298839	98.9%	33.86	30.99	17.79	14.92	32.71	16.07	32.43	16.36	24.39	0.12	0.07	0.10	0.58	0.58	Frag<80[5255,5256]
YOL014W		Putative protein of unknown function	Uncharacterized	chr15:299694-300068	299694-300068	98.7%	137.78	97.25	116.16	72.94	307.97	197.21	117.51	94.55	252.59	0.43	0.38	1.05	1.42	1.83	Frag>80[5257,5258]
YOL013W-B		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the long terminal repeat (LTR) of a Ty1 element"	Dubious	chr15:300691-300981	300691-300981	97.0%	0.00	0.00	3.54	3.54	24.80	7.09	0.00	3.54	15.95	0.00	0.01	0.07	2.17	NaN	
YOL013W-A		Putative protein of unknown function; identified by SAGE	Uncharacterized	chr15:301048-301239	301048-301239	71.7%	29.05	21.79	7.26	14.52	29.05	43.57	25.42	10.89	36.31	0.09	0.04	0.15	1.74	0.07	Matched[5259]
YOL013C	HRD1	Ubiquitin-protein ligase required for endoplasmic reticulum-associated degradation (ERAD) of misfolded proteins; genetically linked to the unfolded protein response (UPR); regulated through association with Hrd3p; contains an H2 ring finger	Verified	chr15:301381-303036	301381-303036	99.0%	111.58	159.75	145.73	142.68	262.80	188.41	135.67	144.20	225.60	0.50	0.59	0.93	0.65	1.13	Frag>80[5259,5260]
YOL012C	HTZ1	"Histone variant H2AZ, exchanged for histone H2A in nucleosomes by the SWR1 complex; involved in transcriptional regulation through prevention of the spread of silent heterochromatin"	Verified	chr15:303580-303984	303580-303984	99.1%	782.55	795.02	827.41	757.63	670.40	476.01	788.79	792.52	573.21	2.91	3.22	2.37	-0.47	-0.40	Matched[5261]
YOL011W	PLB3	Phospholipase B (lysophospholipase) involved in phospholipid metabolism; hydrolyzes phosphatidylinositol and phosphatidylserine and displays transacylase activity in vitro	Verified	chr15:305350-307410	305350-307410	98.8%	166.90	165.91	116.83	80.99	62.83	52.52	166.40	98.91	57.68	0.61	0.40	0.24	-0.78	0.27	Frag>80[5263,5264,5265]
YOL010W	RCL1	"RNA terminal phosphate cyclase-like protein involved in rRNA processing at sites A0, A1, and A2; does not possess detectable RNA cyclase activity"	Verified	chr15:307939-309042	307939-309042	98.6%	130.44	105.64	101.05	106.56	10.10	7.35	118.04	103.80	8.73	0.44	0.42	0.04	-3.57	-3.15	Matched[5266]
YOL009C	MDM12	"Mitochondrial outer membrane protein, required for transmission of mitochondria to daughter cells; component of the Mdm10-Mdm12-Mmm1 complex involved in import and assembly of outer membrane beta-barrel proteins"	Verified	chr15:309325-310140	309325-310140	99.3%	78.98	92.55	71.57	82.68	177.70	114.76	85.76	77.12	146.23	0.32	0.31	0.61	0.92	0.96	Covered/w/another[5267]
YOL008W	COQ10	"Coenzyme Q binding protein, required for function of coenzyme Q in respiration by functioning in the delivery of Q<sub>6</sub> to its proper location for electron transport, START domain protein with homologs in bacteria and eukaryotes"	Verified	chr15:310313-310936	310313-310936	99.0%	119.80	93.90	119.80	111.70	169.98	132.75	106.85	115.75	151.37	0.39	0.47	0.63	0.39	0.25	Covered/w/another[5267]
YOL007C	CSI2	Protein of unknown function; green fluorescent protein (GFP)- fusion protein localizes to the mother side of the bud neck and the vacuole; YOL007C is not an essential gene	Verified	chr15:311343-312368	311343-312368	98.7%	299.06	200.36	245.76	190.49	49.35	34.55	249.71	218.13	41.95	0.92	0.89	0.17	-2.38	-1.99	Matched[5268]
YOL006C	TOP1	"Topoisomerase I, nuclear enzyme that relieves torsional strain in DNA by cleaving and re-sealing the phosphodiester backbone; relaxes both positively and negatively supercoiled DNA; functions in replication, transcription, and recombination"	Verified	chr15:313079-315388	313079-315388	99.3%	248.58	206.72	174.44	123.42	130.83	85.48	227.65	148.93	108.16	0.84	0.60	0.45	-0.46	-0.14	Matched[5269]
YOL005C	RPB11	RNA polymerase II subunit B12.5; part of central core; similar to Rpc19p and bacterial alpha subunit	Verified	chr15:315814-316176	315814-316176	98.7%	586.18	496.86	544.31	480.11	611.30	407.54	541.52	512.21	509.42	2.00	2.08	2.11	-0.01	-0.10	Matched[5270]
YOL004W	SIN3	"Component of the Sin3p-Rpd3p histone deacetylase complex, involved in transcriptional repression and activation of diverse processes, including mating-type switching and meiosis; involved in the maintenance of chromosomal integrity"	Verified	chr15:316939-321549	316939-321549	98.7%	194.60	217.45	199.21	183.40	153.97	232.82	206.02	191.31	193.39	0.76	0.78	0.80	0.02	0.77	Frag>80[5271,5272]
YOL003C	PFA4	"Palmitoyltransferase with autoacylation activity, required for palmitoylation of amino acid permeases containing a C-terminal Phe-Trp-Cys site; required for modification of Chs3p; member of the DHHC family of putative palmitoyltransferases"	Verified	chr15:321859-322995	321859-322995	99.0%	165.28	143.07	127.96	116.41	120.85	85.31	154.18	122.19	103.08	0.57	0.50	0.43	-0.25	-0.01	Matched[5273]
YOL002C	IZH2	"Plasma membrane protein involved in zinc metabolism and osmotin-induced apoptosis; transcription regulated by Zap1p, zinc and fatty acid levels; similar to mammalian adiponectins; deletion increases sensitivity to elevated zinc"	Verified	chr15:323412-324365	323412-324365	99.1%	312.95	743.26	271.72	277.00	182.91	119.47	528.11	274.36	151.19	1.95	1.11	0.63	-0.86	-1.12	Frag>80[5274,5275]
YOL001W	PHO80	"Cyclin, negatively regulates phosphate metabolism; Pho80p-Pho85p (cyclin-CDK complex) phosphorylates Pho4p and Swi5p; deletion of PHO80 leads to aminoglycoside supersensitivity; truncated form of PHO80 affects vacuole inheritance"	Verified	chr15:325250-326131	325250-326131	99.1%	109.87	94.99	86.98	67.53	88.13	58.37	102.43	77.25	73.25	0.38	0.31	0.30	-0.08	0.11	Matched[5276]
YOR001W	RRP6	Exonuclease component of the nuclear exosome; contributes to the quality-control system that retains and degrades aberrant mRNAs in the nucleus	Verified	chr15:326833-329034	326833-329034	98.7%	174.30	122.79	115.89	103.47	26.21	25.29	148.54	109.68	25.75	0.55	0.45	0.11	-2.09	-1.51	Matched[5277]
YOR002W	ALG6	"Alpha 1,3 glucosyltransferase, involved in transfer of oligosaccharides from dolichyl pyrophosphate to asparagine residues of proteins during N-linked protein glycosylation; mutations in human ortholog are associated with disease"	Verified	chr15:329418-331052	329418-331052	99.2%	415.12	464.47	357.76	366.39	291.76	238.09	439.80	362.08	264.93	1.62	1.47	1.10	-0.45	-0.13	Matched[5278]
YOR003W	YSP3	Putative precursor to the subtilisin-like protease III	Verified	chr15:331456-332892	331456-332892	98.6%	43.07	49.43	33.19	43.07	156.05	105.91	46.25	38.13	130.98	0.17	0.15	0.54	1.78	1.33	Matched[5279]
YOR004W	UTP23	"Essential nucleolar protein that is a component of the SSU (small subunit) processome involved in 40S ribosomal subunit biogenesis; has homology to PINc domain protein Fcf1p, although the PINc domain of Utp23p is not required for function"	Verified	chr15:333593-334357	333593-334357	98.4%	367.84	176.62	207.16	146.07	13.28	9.30	272.23	176.62	11.29	1.00	0.72	0.05	-3.97	-2.92	Matched[5280]
YOR005C	DNL4	"DNA ligase required for nonhomologous end-joining (NHEJ), forms stable heterodimer with required cofactor Lif1p, interacts with Nej1p; involved in meiosis, not essential for vegetative growth"	Verified	chr15:334510-337344	334510-337344	99.2%	35.56	48.01	47.65	33.07	102.42	78.95	41.79	40.36	90.68	0.15	0.16	0.38	1.17	1.08	Matched[5281]
YOR006C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus	Uncharacterized	chr15:337681-338622	337681-338622	99.3%	192.44	153.95	177.47	129.36	131.50	87.67	173.19	153.41	109.58	0.64	0.62	0.45	-0.49	-1.24	Matched[5282]
YOR007C	SGT2	"Glutamine-rich cytoplasmic protein of unknown function; contains tetratricopeptide (TPR) repeats, which often mediate protein-protein interactions; has similarity to human SGT, which is a cochaperone that negatively regulates Hsp70"	Verified	chr15:338939-339979	338939-339979	99.3%	1401.75	1103.79	1376.60	1292.43	4879.52	3609.34	1252.77	1334.52	4244.43	4.62	5.42	17.59	1.67	1.17	Frag>80[5283,5284,5285]
YOR008C	SLG1	Sensor-transducer of the stress-activated PKC1-MPK1 kinase pathway involved in maintenance of cell wall integrity; involved in organization of the actin cytoskeleton; secretory pathway Wsc1p is required for the arrest of secretion response	Verified	chr15:341279-342415	341279-342415	98.8%	346.37	346.37	395.34	377.53	519.11	440.75	346.37	386.44	479.93	1.28	1.57	1.99	0.31	0.57	Matched[5286]
YOR008C-A		"Putative protein of unknown function, includes a potential transmembrane domain; deletion results in slightly lengthened telomeres"	Uncharacterized	chr15:342858-343082	342858-343082	98.7%	4.50	4.50	4.50	4.50	0.00	9.01	4.50	4.50	4.50	0.02	0.02	0.02	0.00	-0.05	
YOR008W-B		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr15:343929-344030	343929-344030	98.7%	29.79	29.79	49.65	9.93	9.93	0.00	29.79	29.79	4.96	0.11	0.12	0.02	-2.58	0.63	
YOR009W	TIR4	Cell wall mannoprotein of the Srp1p/Tip1p family of serine-alanine-rich proteins; expressed under anaerobic conditions and required for anaerobic growth; transcription is also induced by cold shock	Verified	chr15:344335-345798	344335-345798	74.7%	53.00	49.35	44.78	23.76	36.55	29.24	51.18	34.27	32.90	0.19	0.14	0.14	-0.06	0.43	Frag<80[5287]
YOR010C	TIR2	Putative cell wall mannoprotein of the Srp1p/Tip1p family of serine-alanine-rich proteins; transcription is induced by cold shock and anaerobiosis	Verified	chr15:346195-346950	346195-346950	85.7%	67.91	98.77	67.91	43.21	46.30	26.24	83.34	55.56	36.27	0.31	0.23	0.15	-0.62	1.07	Matched[5288]
YOR011W	AUS1	"Transporter of the ATP-binding cassette family, involved in uptake of sterols and anaerobic growth"	Verified	chr15:349679-353863	349679-353863	99.0%	52.15	44.90	40.08	40.56	16.66	13.04	48.53	40.32	14.85	0.18	0.16	0.06	-1.44	-0.76	Frag>80[5290,5291]
YOR011W-A		Putative protein of unknown function	Uncharacterized	chr15:355652-355858	355652-355858	99.0%	0.00	0.00	0.00	0.00	14.64	0.00	0.00	0.00	7.32	0.00	0.00	0.03	Inf	NaN	
YOR012W		Putative protein of unknown function	Uncharacterized	chr15:356543-356956	356543-356956	98.6%	102.88	90.63	68.59	56.34	166.56	105.33	96.75	62.46	135.95	0.36	0.25	0.56	1.12	1.35	Matched[5292]
YOR013W		Hypothetical protein; null mutant displays increased levels of spontaneous Rad52 foci	Dubious	chr15:356751-357221	356751-357221	98.6%	88.26	75.34	75.34	66.73	204.50	127.01	81.80	71.04	165.75	0.30	0.29	0.69	1.22	1.34	Matched[5292]
YOR014W	RTS1	B-type regulatory subunit of protein phosphatase 2A (PP2A); homolog of the mammalian B' subunit of PP2A	Verified	chr15:357674-359947	357674-359947	98.9%	334.35	351.69	318.79	324.13	335.69	289.00	343.02	321.46	312.34	1.27	1.30	1.29	-0.04	0.50	Matched[5293]
YOR015W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr15:359993-360352	359993-360352	99.2%	532.09	473.28	445.27	417.27	663.71	369.66	502.68	431.27	516.69	1.86	1.75	2.14	0.26	0.42	
YOR016C	ERP4	"Protein with similarity to Emp24p and Erv25p, member of the p24 family involved in ER to Golgi transport"	Verified	chr15:360461-361084	360461-361084	99.0%	299.33	260.50	279.92	249.17	241.08	145.62	279.92	264.55	193.35	1.03	1.07	0.80	-0.45	-0.43	Matched[5294]
YOR017W	PET127	"Protein with a role in mitochondrial RNA stability and/or processing, located in the mitochondrial membrane"	Verified	chr15:361412-363814	361412-363814	98.7%	78.43	74.63	75.47	68.31	69.57	59.03	76.53	71.89	64.30	0.28	0.29	0.27	-0.16	0.54	Frag>80[5295,5296]
YOR018W	ROD1	"Membrane protein; overexpression confers resistance to the GST substrate o-dinitrobenzene as well as to zinc and calcium; contains 2 PY motifs, which are required for Rod1p interaction with Rsp5p, a hect-type ubiquitin ligase"	Verified	chr15:364369-366882	364369-366882	98.9%	69.16	78.01	79.21	67.95	164.05	145.56	73.58	73.58	154.80	0.27	0.30	0.64	1.07	0.99	Matched[5297]
YOR019W		"Protein of unknown function that may interact with ribosomes, based on co-purification experiments"	Verified	chr15:368127-370319	368127-370319	98.6%	28.20	40.22	27.28	17.57	98.47	51.78	34.21	22.42	75.12	0.13	0.09	0.31	1.74	1.13	Matched[5298]
YOR020C	HSP10	"Mitochondrial matrix co-chaperonin that inhibits the ATPase activity of Hsp60p, a mitochondrial chaperonin; involved in protein folding and sorting in the mitochondria; 10 kD heat shock protein with similarity to E. coli groES"	Verified	chr15:370524-370844	370524-370844	99.0%	2256.20	1655.17	2105.15	1828.24	21067.26	12206.11	1955.68	1966.70	16636.69	7.22	7.98	68.93	3.08	1.26	Matched[5299]
YOR020W-A		"Putative protein of unknown function, conserved in A. gossypii; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr15:371685-371957	371685-371957	98.6%	393.99	602.14	464.61	438.59	1397.55	739.66	498.06	451.60	1068.61	1.84	1.83	4.43	1.24	NaN	Matched[5301]
YOR021C		Putative protein of unknown function; YOR021C is not an essential gene	Uncharacterized	chr15:372798-373439	372798-373439	99.4%	559.41	314.96	385.48	357.27	172.37	73.65	437.19	371.38	123.01	1.61	1.51	0.51	-1.59	-2.00	Matched[5303]
YOR022C		"Protein with similarity to bovine phospholipase A1; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr15:373710-375857	373710-375857	99.1%	50.72	63.87	63.40	46.96	92.05	62.93	57.30	55.18	77.49	0.21	0.22	0.32	0.49	0.32	Matched[5304]
YOR023C	AHC1	"Subunit of the Ada histone acetyltransferase complex, required for structural integrity of the complex"	Verified	chr15:376012-377712	376012-377712	98.8%	119.65	144.66	146.44	134.54	254.19	197.04	132.16	140.49	225.62	0.49	0.57	0.93	0.68	1.14	Matched[5305]
YOR024W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr15:377847-378170	377847-378170	98.8%	3.12	0.00	0.00	3.12	3.12	3.12	1.56	1.56	3.12	0.01	0.01	0.01	1.00	2.43	Overlap[5305,5306]
YOR025W	HST3	"Member of the Sir2 family of NAD(+)-dependent protein deacetylases; involved along with Hst4p in telomeric silencing, cell cycle progression, radiation resistance, genomic stability and short-chain fatty acid metabolism"	Verified	chr15:378219-379562	378219-379562	98.6%	227.06	245.92	184.06	150.87	206.69	102.59	236.49	167.47	154.64	0.87	0.68	0.64	-0.11	0.55	Matched[5306]
YOR026W	BUB3	"Kinetochore checkpoint WD40 repeat protein that localizes to kinetochores during prophase and metaphase, delays anaphase in the presence of unattached kinetochores; forms complexes with Mad1p-Bub1p and with Cdc20p, binds Mad2p and Mad3p"	Verified	chr15:379781-380806	379781-380806	98.9%	186.21	204.93	151.72	97.54	112.32	77.83	195.57	124.63	95.07	0.72	0.51	0.39	-0.39	-0.12	Matched[5307]
YOR027W	STI1	"Hsp90 cochaperone, interacts with the Ssa group of the cytosolic Hsp70 chaperones; activates the ATPase activity of Ssa1p; homolog of mammalian Hop protein"	Verified	chr15:381053-382822	381053-382822	98.5%	628.08	417.00	699.20	741.65	9254.82	9870.85	522.54	720.42	9562.83	1.93	2.92	39.62	3.73	3.51	Matched[5308]
YOR028C	CIN5	Basic leucine zipper transcriptional factor of the yAP-1 family that mediates pleiotropic drug resistance and salt tolerance; localizes constitutively to the nucleus	Verified	chr15:383533-384420	383533-384420	98.8%	63.84	39.90	117.42	128.82	739.85	745.55	51.87	123.12	742.70	0.19	0.50	3.08	2.59	3.17	Matched[5310]
YOR029W		Dubious open reading frame unlikely to encode a functional protein; based on available experimental and comparative sequence data	Dubious	chr15:384600-384935	384600-384935	99.2%	6.00	9.00	6.00	6.00	9.00	12.01	7.50	6.00	10.51	0.03	0.02	0.04	0.81	2.61	Overlap[5310]
YOR030W	DFG16	"Probable multiple transmembrane protein, involved in diploid invasive and pseudohyphal growth upon nitrogen starvation; required for accumulation of processed Rim101p"	Verified	chr15:386825-388684	386825-388684	99.0%	97.26	93.45	70.63	82.59	66.83	99.43	95.35	76.61	83.13	0.35	0.31	0.34	0.12	0.75	Matched[5313]
YOR031W	CRS5	"Copper-binding metallothionein, required for wild-type copper resistance"	Verified	chr15:389213-389422	389213-389422	98.2%	126.06	421.82	135.76	189.09	785.45	324.85	273.94	162.42	555.15	1.01	0.66	2.30	1.77	1.59	Matched[5314]
YOR032C	HMS1	Basic helix-loop-helix (bHLH) protein with similarity to myc-family transcription factors; overexpression confers hyperfilamentous growth and suppresses the pseudohyphal filamentation defect of a diploid mep1 mep2 homozygous null mutant	Verified	chr15:389771-391075	389771-391075	99.0%	41.81	73.56	59.62	45.68	89.04	82.85	57.68	52.65	85.95	0.21	0.21	0.36	0.71	0.94	Matched[5315]
YOR032W-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr15:392176-392376	392176-392376	99.3%	15.03	10.02	0.00	10.02	10.02	20.03	12.52	5.01	15.03	0.05	0.02	0.06	1.58	NaN	Overlap[5316]
YOR033C	EXO1	"5'-3' exonuclease and flap-endonuclease involved in recombination, double-strand break repair and DNA mismatch repair; member of the Rad2p nuclease family, with conserved N and I nuclease domains"	Verified	chr15:392416-394524	392416-394524	99.2%	108.48	119.95	93.66	71.68	111.35	69.77	114.21	82.67	90.56	0.42	0.34	0.38	0.13	0.45	Covered/w/another[5316]
YOR034C	AKR2	Ankyrin repeat-containing protein similar to Akr1p; member of a family of putative palmitoyltransferases containing an Asp-His-His-Cys-cysteine rich (DHHC-CRD) domain; possibly involved in constitutive endocytosis of Ste3p	Verified	chr15:394837-397086	394837-397086	98.9%	79.51	81.76	56.60	47.17	53.46	41.33	80.63	51.88	47.39	0.30	0.21	0.20	-0.13	0.19	Covered/w/another[5316]
YOR034C-A		Putative protein of unknown function; identified by expression profiling and mass spectrometry	Uncharacterized	chr15:397426-397668	397426-397668	98.8%	124.91	62.46	62.46	54.13	154.06	62.46	93.68	58.29	108.26	0.35	0.24	0.45	0.89	NaN	Covered/w/another[5316]
YOR035C	SHE4	"Protein containing a UCS (UNC-45/CRO1/SHE4) domain, binds to myosin motor domains to regulate myosin function; involved in endocytosis, polarization of the actin cytoskeleton, and asymmetric mRNA localization"	Verified	chr15:397735-400104	397735-400104	99.2%	74.41	91.00	81.22	85.47	125.87	151.38	82.71	83.34	138.62	0.31	0.34	0.57	0.73	1.48	Matched[5317]
YOR036W	PEP12	"Target membrane receptor (t-SNARE) for vesicular intermediates traveling between the Golgi apparatus and the vacuole; controls entry of biosynthetic, endocytic, and retrograde traffic into the prevacuolar compartment; syntaxin"	Verified	chr15:400348-401214	400348-401214	98.3%	171.29	222.92	198.28	184.20	306.22	186.55	197.11	191.24	246.38	0.73	0.78	1.02	0.37	0.35	Frag>80[5318,5319]
YOR037W	CYC2	"Mitochondrial peripheral inner membrane protein, contains a FAD cofactor in a domain exposed in the intermembrane space; exhibits redox activity in vitro; likely participates in ligation of heme to acytochromes c and c1 (Cyc1p and Cyt1p)"	Verified	chr15:401555-402655	401555-402655	98.8%	130.52	88.24	119.49	97.43	140.63	89.16	109.38	108.46	114.89	0.40	0.44	0.48	0.08	0.37	Covered/w/another[5320]
YOR038C	HIR2	"Non-essential transcriptional corepressor involved in the cell cycle-regulated transcription of histone H2A, H2B, H3, and H4 genes; recruits Swi-Snf complexes to histone gene promoters; promotes heterochromatic gene silencing with Asf1p"	Verified	chr15:402761-405388	402761-405388	99.2%	82.11	75.20	75.20	59.47	61.77	45.66	78.66	67.34	53.72	0.29	0.27	0.22	-0.33	0.26	Covered/w/another[5320]
YOR039W	CKB2	"Beta' regulatory subunit of casein kinase 2, a Ser/Thr protein kinase with roles in cell growth and proliferation; the holoenzyme also contains CKA1, CKA2 and CKB1, the many substrates include transcription factors and all RNA polymerases"	Verified	chr15:405768-406544	405768-406544	98.9%	519.22	422.92	422.92	426.83	543.95	441.14	471.07	424.88	492.54	1.74	1.72	2.04	0.21	0.12	Matched[5321]
YOR040W	GLO4	"Mitochondrial glyoxalase II, catalyzes the hydrolysis of S-D-lactoylglutathione into glutathione and D-lactate"	Verified	chr15:407064-407921	407064-407921	98.5%	87.58	102.97	89.95	92.32	195.29	165.70	95.28	91.13	180.49	0.35	0.37	0.75	0.99	0.88	Matched[5322]
YOR042W	CUE5	"Protein containing a CUE domain that binds ubiquitin, which may facilitate intramolecular monoubiquitination; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern"	Verified	chr15:408425-409660	408425-409660	98.1%	310.16	371.20	367.07	374.50	594.74	610.41	340.68	370.79	602.58	1.26	1.51	2.50	0.70	1.11	Matched[5324]
YOR041C		"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; 85% of ORF overlaps the uncharacterized gene CUE5; deletion in cyr1 mutant results in loss of stress resistance"	Dubious	chr15:408358-408789	408358-408789	98.0%	266.82	255.02	245.57	262.10	363.64	467.53	260.92	253.84	415.58	0.96	1.03	1.72	0.71	-0.02	Covered/w/another[5324]
YOR043W	WHI2	"Protein required, with binding partner Psr1p, for full activation of the general stress response, possibly through Msn2p dephosphorylation; regulates growth during the diauxic shift; negative regulator of G1 cyclin expression"	Verified	chr15:410870-412330	410870-412330	98.7%	328.00	348.80	331.46	283.62	291.94	237.85	338.40	307.54	264.89	1.25	1.25	1.10	-0.22	0.06	Matched[5325]
YOR044W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion localizes to the ER; null mutant displays increased levels of spontaneous Rad52 foci	Uncharacterized	chr15:413007-413480	413007-413480	99.1%	153.34	240.66	134.17	108.62	195.94	112.88	197.00	121.39	154.41	0.73	0.49	0.64	0.35	0.04	Frag>80[5326,5327]
YOR045W	TOM6	Component of the TOM (translocase of outer membrane) complex responsible for recognition and initial import steps for all mitochondrially directed proteins; promotes assembly and stability of the TOM complex	Verified	chr15:413852-414037	413852-414037	98.9%	1407.29	1227.98	1418.16	1363.82	1630.07	825.90	1317.64	1390.99	1227.98	4.86	5.65	5.09	-0.18	-0.81	Matched[5328]
YOR046C	DBP5	Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family involved in mRNA export from the nucleus; involved in translation termination	Verified	chr15:414460-415908	414460-415908	99.2%	534.56	437.11	467.04	475.39	231.08	187.23	485.83	471.22	209.16	1.79	1.91	0.87	-1.17	-0.51	Matched[5329]
YOR047C	STD1	"Protein involved in control of glucose-regulated gene expression; interacts with protein kinase Snf1p, glucose sensors Snf3p and Rgt2p, and TATA-binding protein Spt15p; acts as a regulator of the transcription factor Rgt1p"	Verified	chr15:416348-417682	416348-417682	99.1%	192.07	156.53	141.41	127.04	55.96	46.88	174.30	134.22	51.42	0.64	0.54	0.21	-1.38	-0.63	Matched[5330]
YOR048C	RAT1	"Nuclear 5' to 3' single-stranded RNA exonuclease, involved in RNA metabolism, including rRNA and snRNA processing as well as mRNA transcription termination"	Verified	chr15:418631-421651	418631-421651	99.1%	197.79	139.66	158.04	136.99	37.42	32.41	168.73	147.51	34.91	0.62	0.60	0.14	-2.08	-1.48	Matched[5332]
YOR049C	RSB1	Suppressor of sphingoid long chain base (LCB) sensitivity of an LCB-lyase mutation; putative integral membrane transporter or flippase that may transport LCBs from the cytoplasmic side toward the extracytoplasmic side of the membrane	Verified	chr15:422669-423733	422669-423733	98.9%	86.42	121.56	104.46	87.37	180.44	117.76	103.99	95.92	149.10	0.38	0.39	0.62	0.64	1.03	Covered/w/another[5333]
YOR050C		Hypothetical protein	Dubious	chr15:424272-424619	424272-424619	98.3%	102.35	93.58	99.43	70.18	35.09	23.39	97.97	84.81	29.24	0.36	0.34	0.12	-1.54	-0.37	Covered/w/another[5333]
YOR051C		"Nuclear protein that inhibits replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts"	Uncharacterized	chr15:424848-426086	424848-426086	99.3%	598.01	477.76	451.76	455.82	167.38	125.94	537.88	453.79	146.66	1.99	1.84	0.61	-1.63	-1.46	Matched[5334]
YOR052C		"Nuclear protein of unknown function; expression induced by nitrogen limitation in a GLN3, GAT1-independent manner and by weak acid"	Verified	chr15:426774-427226	426774-427226	99.2%	246.94	286.99	398.22	329.25	4082.31	2275.86	266.96	363.74	3179.09	0.99	1.48	13.17	3.13	2.68	Matched[5336]
YOR053W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene VHS3/YOR054C"	Dubious	chr15:427819-428160	427819-428160	79.8%	238.13	223.48	205.16	205.16	564.19	413.98	230.80	205.16	489.09	0.85	0.83	2.03	1.25	0.69	Matched[5337]
YOR055W		Dubious open reading frame unlikely to encode a functional protein; based on available experimental and comparative sequence data	Dubious	chr15:429480-429914	429480-429914	98.9%	60.42	90.63	74.36	90.63	181.25	197.52	75.52	82.49	189.39	0.28	0.33	0.78	1.20	0.30	Covered/w/another[5338]
YOR054C	VHS3	"Functionally redundant (see also SIS2) inhibitory subunit of Ppz1p, a PP1c-related ser/thr protein phosphatase Z isoform; synthetically lethal with sis2; putative phosphopantothenoylcysteine decarboxylase involved in coenzyme A biosynthesis"	Verified	chr15:427835-429859	427835-429859	95.6%	123.42	152.86	128.59	136.33	330.51	255.11	138.14	132.46	292.81	0.51	0.54	1.21	1.14	0.89	Frag>80[5337,5338]
YOR056C	NOB1	Essential nuclear protein involved in proteasome maturation and synthesis of 40S ribosomal subunits; required for cleavage of the 20S pre-rRNA to generate the mature 18S rRNA	Verified	chr15:430249-431628	430249-431628	99.2%	240.37	144.66	207.49	126.39	28.49	10.96	192.51	166.94	19.73	0.71	0.68	0.08	-3.08	-2.07	Matched[5339]
YOR057W	SGT1	"Probable cochaperone, regulates activity of Cyr1p (adenylyl cyclase); involved in assembly of the kinetochore complex, associates with the SCF (Skp1p/Cdc53p/F box protein) ubiquitin ligase complex"	Verified	chr15:432188-433375	432188-433375	98.8%	247.14	240.32	202.83	173.85	181.52	187.49	243.73	188.34	184.50	0.90	0.76	0.76	-0.03	0.11	Covered/w/another[5340]
YOR058C	ASE1	Mitotic spindle midzone localized microtubule-associated protein (MAP) family member; required for spindle elongation and stabilization; undergoes cell cycle-regulated degradation by anaphase promoting complex; potential Cdc28p substrate	Verified	chr15:433690-436347	433690-436347	99.3%	97.02	114.07	94.36	90.95	104.22	100.05	105.54	92.66	102.13	0.39	0.38	0.42	0.14	0.64	Covered/w/another[5340]
YOR059C		Hypothetical protein	Uncharacterized	chr15:438908-440260	438908-440260	99.3%	156.99	194.94	143.60	139.14	231.40	161.46	175.97	141.37	196.43	0.65	0.57	0.81	0.47	0.72	Frag<80[5342]
YOR060C		Protein of unknown function required for cell viability; deletion mutant harbors aberrant mitochondria	Uncharacterized	chr15:440392-441165	440392-441165	99.3%	78.10	89.81	65.08	63.78	70.29	83.31	83.96	64.43	76.80	0.31	0.26	0.32	0.25	1.05	Covered/w/another[5343]
YOR061W	CKA2	"Alpha' catalytic subunit of casein kinase 2, a Ser/Thr protein kinase with roles in cell growth and proliferation; the holoenzyme also contains CKA1, CKB1 and CKB2, the many substrates include transcription factors and all RNA polymerases"	Verified	chr15:441536-442555	441536-442555	98.8%	491.29	442.66	429.76	437.70	312.64	265.99	466.98	433.73	289.32	1.72	1.76	1.20	-0.58	-0.19	Matched[5344]
YOR062C		Protein of unknown function; similar to YKR075Cp and Reg1p; expression regulated by glucose and Rgt1p; GFP-fusion protein is induced in response to the DNA-damaging agent MMS	Uncharacterized	chr15:442727-443533	442727-443533	98.9%	71.42	132.81	62.65	57.64	121.53	60.14	102.11	60.14	90.84	0.38	0.24	0.38	0.59	0.13	Matched[5345]
YOR063W	RPL3	"Protein component of the large (60S) ribosomal subunit, has similarity to E. coli L3 and rat L3 ribosomal proteins; involved in the replication and maintenance of killer double stranded RNA virus"	Verified	chr15:444688-445851	444688-445851	98.5%	16167.81	13673.40	13839.17	10214.92	4078.81	2483.93	14920.60	12027.05	3281.37	55.08	48.82	13.60	-1.87	-1.76	Frag>80[5346,5347,5348,5349]
YOR064C	YNG1	"Subunit of the NuA3 histone acetyltransferase complex that acetylates histone H3; contains PHD finger domain that interacts with methylated histone H3, has similarity to the human tumor suppressor ING1"	Verified	chr15:446081-446740	446081-446740	99.2%	119.08	151.14	129.76	91.60	170.98	116.02	135.11	110.68	143.50	0.50	0.45	0.59	0.37	0.05	Frag>80[5349,5350]
YOR065W	CYT1	"Cytochrome c1, component of the mitochondrial respiratory chain; expression is regulated by the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex"	Verified	chr15:447441-448370	447441-448370	98.6%	742.74	921.61	965.24	1276.07	1497.48	1440.76	832.17	1120.65	1469.12	3.07	4.55	6.09	0.39	0.54	Matched[5351]
YOR066W		Protein of unknown function; potential Cdc28p substrate; YOR066W is not an essential gene	Uncharacterized	chr15:449438-451327	449438-451327	98.9%	140.67	220.36	155.11	156.71	147.62	183.99	180.51	155.91	165.80	0.67	0.63	0.69	0.09	0.97	Matched[5352]
YOR067C	ALG8	"Glucosyl transferase, involved in N-linked glycosylation; adds glucose to the dolichol-linked oligosaccharide precursor prior to transfer to protein during lipid-linked oligosaccharide biosynthesis; similar to Alg6p"	Verified	chr15:451731-453464	451731-453464	98.9%	304.93	269.94	272.28	248.96	136.43	88.62	287.44	260.62	112.53	1.06	1.06	0.47	-1.21	-0.89	Matched[5353]
YOR069W	VPS5	Nexin-1 homolog required for localizing membrane proteins from a prevacuolar/late endosomal compartment back to the late Golgi apparatus; structural component of the retromer membrane coat complex; forms a retromer subcomplex with Vps17p	Verified	chr15:453770-455797	453770-455797	98.5%	130.67	130.67	139.18	132.17	156.70	135.17	130.67	135.67	145.94	0.48	0.55	0.60	0.11	0.43	Frag<80[5354]
YOR068C	VAM10	Protein involved in vacuole morphogenesis; acts at an early step of homotypic vacuole fusion that is required for vacuole tethering	Verified	chr15:453871-454215	453871-454215	98.5%	97.12	82.40	91.23	88.29	103.00	88.29	89.76	89.76	95.65	0.33	0.36	0.40	0.09	0.14	Covered[5354]
YOR070C	GYP1	"Cis-golgi GTPase-activating protein (GAP) for the Rab family members Ypt1p (in vivo) and for Ypt1p, Sec4p, Ypt7p, and Ypt51p (in vitro); involved in vesicle docking and fusion"	Verified	chr15:455909-457822	455909-457822	98.9%	98.76	97.18	116.19	107.21	127.81	104.57	97.97	111.70	116.19	0.36	0.45	0.48	0.06	0.67	Matched[5355]
YOR071C	THI71	Transporter of thiamine or related compound; shares sequence similarity to Thi7p; proposed to be involved in 5-fluorocytosine sensitivity	Verified	chr15:459482-461278	459482-461278	85.0%	94.26	115.21	84.44	84.44	58.26	47.78	104.73	84.44	53.02	0.39	0.34	0.22	-0.67	-0.19	Matched[5356]
YOR072W		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data; partially overlaps the dubious gene YOR072W-A; diploid deletion strains are methotrexate, paraquat and wortmannin sensitive"	Dubious	chr15:461504-461818	461504-461818	99.0%	35.28	28.87	25.66	12.83	16.04	12.83	32.08	19.25	14.43	0.12	0.08	0.06	-0.42	-0.17	Covered/w/another[5356]
YOR072W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YOR072W; originally identified by fungal homology and RT-PCR"	Dubious	chr15:461793-462041	461793-462041	98.1%	12.28	28.65	32.74	8.19	8.19	4.09	20.46	20.46	6.14	0.08	0.08	0.03	-1.74	NaN	
YOR072W-B		Putative protein of unknown function; identified by expression profiling and mass spectrometry	Uncharacterized	chr15:464471-464632	464471-464632	76.3%	16.19	8.09	8.09	16.19	0.00	16.19	12.14	12.14	8.09	0.04	0.05	0.03	-0.58	NaN	Covered/w/another[5358]
YOR073W	SGO1	"Component of the spindle checkpoint, involved in sensing lack of tension on mitotic chromosomes; protects centromeric Rec8p at meiosis I; required for accurate chromosomal segregation at meiosis II and for mitotic chromosome stability"	Verified	chr15:464773-466545	464773-466545	98.8%	135.88	143.31	137.03	132.46	92.49	61.66	139.59	134.74	77.08	0.52	0.55	0.32	-0.81	-0.50	Covered/w/another[5358]
YOR073W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially/completely overlaps the verified ORF CDC21/YOR074C; identified by RT-PCR"	Dubious	chr15:467392-467625	467392-467625	99.3%	202.37	137.78	202.37	150.70	94.73	94.73	170.08	176.53	94.73	0.63	0.72	0.39	-0.90	NaN	Covered/w/another[5358]
YOR074C	CDC21	"Thymidylate synthase, required for de novo biosynthesis of pyrimidine deoxyribonucleotides; expression is induced at G1/S"	Verified	chr15:466677-467591	466677-467591	99.2%	257.90	246.88	243.57	231.45	115.72	109.11	252.39	237.51	112.42	0.93	0.96	0.47	-1.08	-0.78	Covered/w/another[5358]
YOR075W	UFE1	"t-SNARE required for ER membrane fusion and vesicular traffic, integral membrane protein that constitutes with Sec20p and Use1p the trimeric acceptor for R/v-SNAREs on Golgi-derived vesicles at the ER; part of Dsl1p complex"	Verified	chr15:468214-469254	468214-469254	98.8%	103.04	111.79	114.71	78.74	209.97	98.18	107.42	96.72	154.08	0.40	0.39	0.64	0.67	0.43	Covered/w/another[5360]
YOR076C	SKI7	"Putative GTPase that mediates interactions via its N-terminus between the exosome and Ski complex (Ski2p, Ski3p, Ski8p) which operate in the 3'-to-5' mRNA-decay pathway; cytoplasmic protein required for degrading nonstop mRNAs"	Verified	chr15:469379-471622	469379-471622	99.2%	87.64	79.55	80.45	81.35	89.44	79.55	83.59	80.90	84.49	0.31	0.33	0.35	0.06	0.78	Covered/w/another[5360]
YOR077W	RTS2	"Basic zinc-finger protein, similar to human and mouse Kin17 proteins which are chromatin-associated proteins involved in UV response and DNA replication"	Verified	chr15:471901-472599	471901-472599	98.3%	50.92	68.38	80.02	55.29	34.92	29.10	59.65	67.66	32.01	0.22	0.27	0.13	-1.08	-0.31	Matched[5361]
YOR078W	BUD21	Component of small ribosomal subunit (SSU) processosome that contains U3 snoRNA; originally isolated as bud-site selection mutant that displays a random budding pattern	Verified	chr15:472727-473371	472727-473371	98.1%	330.26	279.69	278.11	232.29	94.81	39.50	304.98	255.20	67.16	1.13	1.04	0.28	-1.93	-1.75	Covered/w/another[5362]
YOR079C	ATX2	"Golgi membrane protein involved in manganese homeostasis; overproduction suppresses the sod1 (copper, zinc superoxide dismutase) null mutation"	Verified	chr15:473477-474418	473477-474418	99.1%	126.39	109.26	152.10	89.98	68.55	59.98	117.83	121.04	64.27	0.43	0.49	0.27	-0.91	-0.76	Matched[5362]
YOR080W	DIA2	"Origin-binding F-box protein that forms an SCF ubiquitin ligase complex with Skp1p and Cdc53p; plays a role in DNA replication, involved in invasive and pseudohyphal growth"	Verified	chr15:474554-476794	474554-476794	98.8%	91.65	92.10	87.13	69.52	59.14	40.63	91.87	78.33	49.89	0.34	0.32	0.21	-0.65	-0.51	Covered/w/another[5363]
YOR081C	TGL5	Triacylglycerol lipase involved in TAG mobilization; localizes to lipid particles; potential Cdc28p substrate	Verified	chr15:476941-479190	476941-479190	98.1%	141.85	172.22	141.85	134.60	118.29	153.64	157.04	138.23	135.96	0.58	0.56	0.56	-0.02	0.66	Covered/w/another[5363]
YOR083W	WHI5	"Repressor of G1 transcription that binds to SCB binding factor (SBF) at SCB target promoters in early G1; phosphorylation of Whi5p by the CDK, Cln3p/Cdc28p relieves repression and promoter binding by Whi5; periodically expressed in G1"	Verified	chr15:479535-480422	479535-480422	97.9%	81.64	66.69	72.44	90.84	65.54	90.84	74.17	81.64	78.19	0.27	0.33	0.32	-0.06	0.81	Covered/w/another[5363]
YOR082C		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data; partially overlaps the verified gene YOR083W"	Dubious	chr15:479298-479639	479298-479639	98.0%	47.75	38.80	47.75	32.83	50.73	74.61	43.27	40.29	62.67	0.16	0.16	0.26	0.64	0.49	Covered/w/another[5363]
YOR084W		Putative lipase of the peroxisomal matrix; transcriptionally activated by Yrm1p along with genes involved in multidrug resistance	Verified	chr15:480589-481752	480589-481752	98.4%	159.74	180.69	189.42	137.92	197.27	150.14	170.21	163.67	173.70	0.63	0.66	0.72	0.09	0.47	Covered/w/another[5363]
YOR085W	OST3	"Gamma subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes asparagine-linked glycosylation of newly synthesized proteins; Ost3p is important for N-glycosylation of a subset of proteins"	Verified	chr15:482035-483087	482035-483087	99.2%	719.85	691.13	681.56	611.68	517.87	529.36	705.49	646.62	523.61	2.60	2.62	2.17	-0.30	0.01	Matched[5364]
YOR086C	TCB1	"Lipid-binding protein containing three calcium and lipid binding domains; non-tagged protein localizes to mitochondria and GFP-fusion protein localizes to the cell periphery; C-termini of Tcb1p, Tcb2p and Tcb3p interact"	Verified	chr15:483221-486781	483221-486781	99.2%	334.69	445.69	401.52	399.82	293.35	341.77	390.19	400.67	317.56	1.44	1.63	1.32	-0.34	0.09	Frag>80[5365]
YOR087W	YVC1	"Vacuolar cation channel, mediates release of Ca(2+) from the vacuole in response to hyperosmotic shock"	Verified	chr15:487709-489736	487709-489736	98.8%	157.20	178.15	185.64	161.69	161.19	140.73	167.68	173.66	150.96	0.62	0.70	0.63	-0.20	0.31	Frag>80[5366,5367,5368]
YOR089C	VPS21	GTPase required for transport during endocytosis and for correct sorting of vacuolar hydrolases; localized in endocytic intermediates; detected in mitochondria; geranylgeranylation required for membrane association; mammalian Rab5 homolog	Verified	chr15:490198-490830	490198-490830	99.3%	561.51	531.28	528.10	469.25	1256.63	941.68	546.39	498.67	1099.15	2.02	2.02	4.55	1.14	0.50	Frag>80[5368,5369]
YOR090C	PTC5	Mitochondrially localized type 2C protein phosphatase involved in regulation of pyruvate dehydrogenase activity; contains Mg2+/Mn2+-dependent casein phosphatase activity in vitro	Verified	chr15:491125-492843	491125-492843	99.1%	216.69	223.74	219.04	198.49	253.69	233.14	220.22	208.76	243.41	0.81	0.85	1.01	0.22	0.65	Matched[5370]
YOR091W	TMA46	Protein of unknown function that associates with ribosomes; interacts with GTPase Rbg1p	Verified	chr15:493434-494471	493434-494471	98.0%	324.27	188.67	244.68	194.56	56.01	35.38	256.47	219.62	45.69	0.95	0.89	0.19	-2.26	-2.03	Covered/w/another[5371]
YOR092W	ECM3	Non-essential protein of unknown function	Verified	chr15:495128-496969	495128-496969	99.0%	181.49	203.98	194.11	125.02	134.34	103.08	192.73	159.56	118.71	0.71	0.65	0.49	-0.43	0.29	Covered/w/another[5371]
YOR093C		Putative protein of unknown function; deletion causes sensitivity to unfolded protein response-inducing agents	Uncharacterized	chr15:497507-502453	497507-502453	99.3%	60.89	56.00	42.77	36.25	31.57	34.62	58.45	39.51	33.09	0.22	0.16	0.14	-0.26	-0.23	Frag>80[5372,5373]
YOR094W	ARF3	"Glucose-repressible ADP-ribosylation factor, GTPase of the Ras superfamily involved in development of polarity"	Verified	chr15:502796-503347	502796-503347	98.6%	181.92	205.80	170.89	163.54	203.97	145.16	193.86	167.22	174.57	0.72	0.68	0.72	0.06	-0.17	Matched[5374]
YOR095C	RKI1	"Ribose-5-phosphate ketol-isomerase, catalyzes the interconversion of ribose 5-phosphate and ribulose 5-phosphate in the pentose phosphate pathway; participates in pyridoxine biosynthesis"	Verified	chr15:503553-504329	503553-504329	99.3%	397.93	208.68	243.68	156.84	29.81	5.18	303.31	200.26	17.50	1.12	0.81	0.07	-3.52	-3.10	Matched[5375]
YOR096W	RPS7A	"Protein component of the small (40S) ribosomal subunit, nearly identical to Rps7Bp; interacts with Kti11p; deletion causes hypersensitivity to zymocin; has similarity to rat S7 and Xenopus S8 ribosomal proteins"	Verified	chr15:505795-506768	505795-505938,506340-506768	80.8%	8435.00	6550.95	7622.61	6512.06	1525.39	1212.10	7492.98	7067.34	1368.74	27.66	28.69	5.67	-2.37	-2.36	Covered/w/another[5376]
YOR097C		Putative protein of unknown function; identified as interacting with Hsp82p in a high-throughput two-hybrid screen; YOR097C is not an essential gene	Uncharacterized	chr15:506979-507506	506979-507506	99.4%	127.61	255.22	177.13	201.89	424.73	241.89	191.41	189.51	333.31	0.71	0.77	1.38	0.81	0.59	Covered/w/another[5376]
YOR098C	NUP1	"Nuclear pore complex (NPC) subunit, involved in protein import/export and in export of RNAs, possible karyopherin release factor that accelerates release of karyopherin-cargo complexes after transport across NPC; potential Cdc28p substrate"	Verified	chr15:507949-511179	507949-511179	98.8%	173.31	134.45	131.63	126.92	55.78	66.75	153.88	129.27	61.27	0.57	0.52	0.25	-1.08	-0.22	Matched[5377]
YOR099W	KTR1	"Alpha-1,2-mannosyltransferase involved in O- and N-linked protein glycosylation; type II membrane protein; member of the KRE2/MNT1 mannosyltransferase family"	Verified	chr15:511826-513007	511826-513007	98.4%	1099.11	1079.35	1060.44	902.32	637.64	461.47	1089.23	981.38	549.56	4.02	3.98	2.28	-0.84	-0.74	Matched[5378]
YOR100C	CRC1	"Mitochondrial inner membrane carnitine transporter, required for carnitine-dependent transport of acetyl-CoA from peroxisomes to mitochondria during fatty acid beta-oxidation"	Verified	chr15:513296-514279	513296-514279	98.8%	11.32	9.26	9.26	12.35	134.79	50.42	10.29	10.80	92.60	0.04	0.04	0.38	3.10	0.76	Matched[5379]
YOR101W	RAS1	"GTPase involved in G-protein signaling in the adenylate cyclase activating pathway, plays a role in cell proliferation; localized to the plasma membrane; homolog of mammalian RAS proto-oncogenes"	Verified	chr15:515245-516174	515245-516174	98.6%	281.30	232.24	226.79	254.04	64.33	49.06	256.77	240.41	56.70	0.95	0.98	0.23	-2.08	-2.13	Matched[5380]
YOR102W		"Dubious open reading frame, unlikely to encode a functional protein; extensively overlaps essential OST2 gene encoding a subunit of the ER lumen oligosaccharyltransferase complex"	Dubious	chr15:516424-516774	516424-516774	99.2%	562.95	565.82	505.51	562.95	588.80	465.29	564.38	534.23	527.05	2.08	2.17	2.18	-0.02	-0.62	Matched[5381]
YOR103C	OST2	"Epsilon subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes asparagine-linked glycosylation of newly synthesized proteins"	Verified	chr15:516450-516842	516450-516842	99.3%	538.06	540.62	471.44	509.88	584.18	425.32	539.34	490.66	504.75	1.99	1.99	2.09	0.04	-0.67	Matched[5381]
YOR104W	PIN2	Protein that induces appearance of [PIN+] prion when overproduced	Verified	chr15:517643-518491	517643-518491	98.7%	146.80	133.67	145.61	112.19	134.86	122.93	140.24	128.90	128.90	0.52	0.52	0.53	0.00	0.10	Matched[5382]
YOR105W		"Dubious open reading frame, unlikely to encode a functional protein; based on available experimental and comparative sequence data"	Dubious	chr15:518196-518522	518196-518522	99.2%	151.08	132.58	157.25	117.16	138.75	132.58	141.83	137.20	135.66	0.52	0.56	0.56	-0.02	0.46	Covered/w/another[5382]
YOR106W	VAM3	Syntaxin-related protein required for vacuolar assembly; functions with Vam7p in vacuolar protein trafficking; member of the syntaxin family of proteins	Verified	chr15:519122-519973	519122-519973	98.5%	108.42	113.19	104.85	86.98	92.94	56.00	110.81	95.91	74.47	0.41	0.39	0.31	-0.37	0.15	Matched[5383]
YOR107W	RGS2	Negative regulator of glucose-induced cAMP signaling; directly activates the GTPase activity of the heterotrimeric G protein alpha subunit Gpa2p	Verified	chr15:521354-522283	521354-522283	98.7%	30.49	71.87	20.69	14.16	7.62	11.98	51.18	17.42	9.80	0.19	0.07	0.04	-0.83	0.51	
YOR108W	LEU9	"Alpha-isopropylmalate synthase II (2-isopropylmalate synthase), catalyzes the first step in the leucine biosynthesis pathway; the minor isozyme, responsible for the residual alpha-IPMS activity detected in a leu4 null mutant"	Verified	chr15:523028-524842	523028-524842	89.4%	447.65	426.69	326.18	271.92	38.23	17.88	437.17	299.05	28.06	1.61	1.21	0.12	-3.41	-2.95	Covered/w/another[5384]
YOR108C-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr15:524606-524815	524606-524815	98.8%	626.25	659.98	520.27	375.75	91.53	28.90	643.12	448.01	60.22	2.37	1.82	0.25	-2.90	NaN	Covered/w/another[5384]
YOR109W	INP53	"Phosphatidylinositol 4,5-bisphosphate 5-phosphatase, synaptojanin-like protein with an N-terminal Sac1 domain, plays a role in a TGN (trans Golgi network)-to-early endosome pathway; hyperosmotic stress causes translocation to actin patches"	Verified	chr15:525279-528602	525279-528602	98.9%	165.83	181.65	171.00	135.70	151.22	159.74	173.74	153.35	155.48	0.64	0.62	0.64	0.02	0.66	Covered/w/another[5384]
YOR110W	TFC7	One of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauA globular domain of TFIIIC that binds DNA at the BoxA promoter sites of tRNA and similar genes	Verified	chr15:528942-530249	528942-530249	98.5%	117.25	112.60	145.99	139.00	187.92	111.04	114.93	142.49	149.48	0.42	0.58	0.62	0.07	0.46	Covered/w/another[5384]
YOR111W		Putative protein of unknown function	Uncharacterized	chr15:530430-531128	530430-531128	98.8%	99.93	118.75	104.27	131.79	127.44	84.00	109.34	118.03	105.72	0.40	0.48	0.44	-0.16	0.06	Covered/w/another[5384]
YOR112W	CEX1	"Cytoplasmic component of the nuclear aminoacylation-dependent tRNA export pathway; interacts with nuclear pore component Nup116p; copurifies with tRNA export receptors Los1p and Msn5p, as well as eIF-1a and the RAN GTPase Gsp1p"	Verified	chr15:531509-533794	531509-533794	98.8%	104.44	93.37	113.29	101.34	79.21	80.54	98.91	107.31	79.88	0.37	0.44	0.33	-0.43	0.39	Covered/w/another[5384]
YOR113W	AZF1	"Zinc-finger transcription factor, involved in induction of CLN3 transcription in response to glucose; genetic and physical interactions indicate a possible role in mitochondrial transcription or genome maintenance"	Verified	chr15:534076-536820	534076-536820	98.4%	75.91	82.57	80.72	77.02	99.24	135.15	79.24	78.87	117.20	0.29	0.32	0.49	0.57	1.25	Covered/w/another[5385]
YOR114W		Hypothetical protein	Uncharacterized	chr15:537571-538455	537571-538455	98.8%	61.74	58.31	46.88	41.16	105.18	68.60	60.02	44.02	86.89	0.22	0.18	0.36	0.98	0.61	Covered/w/another[5385]
YOR115C	TRS33	One of 10 subunits of the transport protein particle (TRAPP) complex of the cis-Golgi which mediates vesicle docking and fusion; involved in endoplasmic reticulum (ER) to Golgi membrane traffic	Verified	chr15:538660-539466	538660-539466	99.2%	237.23	247.22	225.99	202.27	252.21	161.07	242.22	214.13	206.64	0.89	0.87	0.86	-0.05	-0.68	Covered/w/another[5385]
YOR116C	RPO31	"RNA polymerase III subunit C160, part of core enzyme; similar to bacterial beta-prime subunit"	Verified	chr15:539764-544146	539764-544146	99.1%	136.06	95.54	92.78	73.44	21.87	24.63	115.80	83.11	23.25	0.43	0.34	0.10	-1.84	-1.20	Covered/w/another[5385]
YOR117W	RPT5	One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; recruited to the GAL1-10 promoter region upon induction of transcription	Verified	chr15:545030-546334	545030-546334	98.5%	499.34	450.34	525.00	495.45	661.11	615.23	474.84	510.22	638.17	1.75	2.07	2.64	0.32	0.71	Matched[5386]
YOR118W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YOR118W is not an essential gene	Uncharacterized	chr15:546858-548561	546858-548561	98.8%	194.85	184.75	169.90	146.73	182.37	154.45	189.80	158.31	168.41	0.70	0.64	0.70	0.09	0.08	Frag<80[5387]
YOR119C	RIO1	Essential serine kinase involved in cell cycle progression and processing of the 20S pre-rRNA into mature 18S rRNA	Verified	chr15:548793-550247	548793-550247	99.4%	166.01	130.04	121.74	109.29	121.74	110.68	148.03	115.52	116.21	0.55	0.47	0.48	0.01	0.15	Covered[5388]
YOR120W	GCY1	"Putative NADP(+) coupled glycerol dehydrogenase, proposed to be involved in an alternative pathway for glycerol catabolism; member of the aldo-keto reductase (AKR) family"	Verified	chr15:551115-552053	551115-552053	98.8%	106.70	295.31	142.27	156.28	2507.99	1871.03	201.01	149.27	2189.51	0.74	0.61	9.07	3.87	2.49	Matched[5389]
YOR121C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; open reading frame overlaps the verified gene GCY1/YOR120W"	Dubious	chr15:551799-552104	551799-552104	99.0%	194.67	402.53	237.56	224.36	3513.89	2118.23	298.60	230.96	2816.06	1.10	0.94	11.67	3.61	-0.06	Matched[5389]
YOR122C	PFY1	"Profilin, actin- and phosphatidylinositol 4,5-bisphosphate-binding protein, involved in cytoskeleton organization, required for normal timing of actin polymerization in response to thermal stress; localizes to plasma membrane and cytosol"	Verified	chr15:552299-552888	552299-552666,552876-552888	99.0%	3107.04	3266.10	2971.83	2855.19	3647.85	2428.37	3186.57	2913.51	3038.11	11.76	11.83	12.59	0.06	-0.67	Frag>80[5390,5391,5392]
YOR123C	LEO1	"Component of the Paf1 complex, which associates with RNA polymerase II and is involved in histone methylation"	Verified	chr15:553177-554571	553177-554571	99.4%	404.59	357.71	389.45	363.48	304.35	244.49	381.15	376.46	274.42	1.41	1.53	1.14	-0.46	-0.26	Frag>80[5391,5392,5393]
YOR124C	UBP2	"Ubiquitin-specific protease that removes ubiquitin from ubiquitinated proteins, cleaves at the C terminus of ubiquitin fusions; capable of cleaving polyubiquitin and possesses isopeptidase activity"	Verified	chr15:554825-558643	554825-558643	99.2%	207.52	236.04	207.00	217.03	299.93	339.27	221.78	212.01	319.60	0.82	0.86	1.32	0.59	0.87	Matched[5394]
YOR125C	CAT5	Protein required for ubiquinone (Coenzyme Q) biosynthesis; localizes to the matrix face of the mitochondrial inner membrane in a large complex with ubiquinone biosynthetic enzymes; required for gluconeogenic gene activation	Verified	chr15:559031-559732	559031-559732	99.0%	263.23	345.22	342.34	306.38	453.10	339.47	304.23	324.36	396.28	1.12	1.32	1.64	0.29	0.07	Frag>80[5395,5396]
YOR126C	IAH1	"Isoamyl acetate-hydrolyzing esterase, required in balance with alcohol acetyltransferase to maintain optimal amounts of isoamyl acetate, which is particularly important in sake brewing"	Verified	chr15:559962-560678	559962-560678	99.0%	123.93	157.73	129.56	121.11	116.89	57.74	140.83	125.34	87.31	0.52	0.51	0.36	-0.52	-0.27	Covered/w/another[5397]
YOR127W	RGA1	"GTPase-activating protein for the polarity-establishment protein Cdc42p; implicated in control of septin organization, pheromone response, and haploid invasive growth"	Verified	chr15:561171-564194	561171-564194	98.8%	152.28	155.29	132.87	104.08	67.60	61.92	153.78	118.48	64.76	0.57	0.48	0.27	-0.87	-0.28	Covered/w/another[5397]
YOR128C	ADE2	"Phosphoribosylaminoimidazole carboxylase, catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway; red pigment accumulates in mutant cells deprived of adenine"	Verified	chr15:564477-566192	564477-566192	99.0%	1192.14	864.98	1269.82	1014.44	374.83	258.32	1028.56	1142.13	316.57	3.80	4.64	1.31	-1.85	-1.42	Matched[5398]
YOR129C		Putative component of the outer plaque of the spindle pole body; may be involved in cation homeostasis or multidrug resistance	Verified	chr15:566878-569559	566878-569559	99.0%	41.03	47.06	32.00	28.99	21.08	19.95	44.05	30.49	20.52	0.16	0.12	0.09	-0.57	-0.62	Frag>80[5399,5400]
YOR130C	ORT1	"Ornithine transporter of the mitochondrial inner membrane, exports ornithine from mitochondria as part of arginine biosynthesis; human ortholog is associated with hyperammonaemia-hyperornithinaemia-homocitrullinuria (HHH) syndrome"	Verified	chr15:569930-570808	569930-570808	99.2%	110.06	169.68	100.89	76.81	129.55	74.52	139.87	88.85	102.03	0.52	0.36	0.42	0.20	-0.16	Matched[5401]
YOR131C		Putative protein of unknown function; non-essential gene	Uncharacterized	chr15:572183-572839	572183-572839	99.1%	293.24	268.68	317.81	277.89	420.68	280.96	280.96	297.85	350.82	1.04	1.21	1.45	0.24	0.09	Frag>80[5403,5404]
YOR132W	VPS17	Subunit of the membrane-associated retromer complex essential for endosome-to-Golgi retrograde protein transport; peripheral membrane protein that assembles onto the membrane with Vps5p to promote vesicle formation	Verified	chr15:573176-574831	573176-574831	98.6%	157.38	197.18	162.89	170.23	342.92	255.35	177.28	166.56	299.14	0.65	0.68	1.24	0.84	1.05	Frag>80[5405,5406,5407]
YOR133W	EFT1	"Elongation factor 2 (EF-2), also encoded by EFT2; catalyzes ribosomal translocation during protein synthesis; contains diphthamide, the unique posttranslationally modified histidine residue specifically ADP-ribosylated by diphtheria toxin"	Verified	chr15:575099-577627	575099-577627	1.7%	3020.17	1890.49	2466.86	1844.38	899.14	530.26	2455.33	2155.62	714.70	9.06	8.75	2.96	-1.59	-1.74	Frag<80[5406,5407,5408,5409,5410]
YOR134W	BAG7	"Rho GTPase activating protein (RhoGAP), stimulates the intrinsic GTPase activity of Rho1p, which plays a role in actin cytoskeleton organization and control of cell wall synthesis; structurally and functionally related to Sac7p"	Verified	chr15:578565-579794	578565-579794	98.8%	13.16	20.56	8.23	13.98	115.98	54.29	16.86	11.10	85.14	0.06	0.05	0.35	2.94	2.59	Matched[5411]
YOR136W	IDH2	"Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase, which catalyzes the oxidation of isocitrate to alpha-ketoglutarate in the TCA cycle; phosphorylated"	Verified	chr15:580251-581360	580251-581360	99.1%	1174.95	2135.27	1207.68	1459.59	3071.05	2370.81	1655.11	1333.64	2720.93	6.11	5.41	11.27	1.03	0.85	Matched[5412]
YOR135C		Hypothetical protein; null mutant displays increased levels of spontaneous Rad52 foci	Dubious	chr15:580160-580501	580160-580501	98.9%	928.54	1570.23	810.25	1111.88	1960.57	1904.39	1249.38	961.06	1932.48	4.61	3.90	8.01	1.01	0.09	Covered/w/another[5412]
YOR137C	SIA1	Protein of unassigned function involved in activation of the Pma1p plasma membrane H+-ATPase by glucose	Verified	chr15:581814-583682	581814-583682	99.2%	73.89	103.02	84.68	107.33	216.28	158.57	88.46	96.01	187.43	0.33	0.39	0.78	0.97	1.16	Matched[5413]
YOR138C	RUP1	"Protein involved in regulation of Rsp5p, which is an essential HECT ubiquitin ligase; required for binding of Rsp5p to Ubp2p; contains an UBA domain"	Verified	chr15:584310-586325	584310-586325	98.9%	109.80	133.87	126.85	93.26	138.88	90.75	121.84	110.05	114.82	0.45	0.45	0.48	0.06	0.39	Matched[5414]
YOR140W	SFL1	"Transcriptional repressor and activator; involved in repression of flocculation-related genes, and activation of stress responsive genes; negatively regulated by cAMP-dependent protein kinase A subunit Tpk2p"	Verified	chr15:586982-589282	586982-589282	98.8%	123.19	104.27	112.63	101.19	49.27	58.07	113.73	106.91	53.67	0.42	0.43	0.22	-0.99	0.18	Covered/w/another[5415]
YOR139C		Hypothetical protein	Dubious	chr15:586951-587343	586951-587343	98.1%	67.41	72.59	70.00	59.63	33.70	28.52	70.00	64.82	31.11	0.26	0.26	0.13	-1.06	0.72	Covered/w/another[5415]
YOR141C	ARP8	"Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling enzyme complexes"	Verified	chr15:589943-592588	589943-592588	99.2%	97.16	102.50	89.16	99.07	87.64	104.79	99.83	94.12	96.21	0.37	0.38	0.40	0.03	0.56	Covered/w/another[5415]
YOR142W	LSC1	"Alpha subunit of succinyl-CoA ligase, which is a mitochondrial enzyme of the TCA cycle that catalyzes the nucleotide-dependent conversion of succinyl-CoA to succinate; phosphorylated"	Verified	chr15:593058-594047	593058-594047	98.7%	719.52	770.69	788.09	792.19	664.25	331.61	745.11	790.14	497.93	2.75	3.21	2.06	-0.67	-0.74	Matched[5416]
YOR143C	THI80	"Thiamine pyrophosphokinase, phosphorylates thiamine to produce the coenzyme thiamine pyrophosphate (thiamine diphosphate)"	Verified	chr15:601384-602343	601384-602343	99.4%	127.90	104.84	115.32	89.11	74.44	35.65	116.37	102.22	55.04	0.43	0.41	0.23	-0.89	-1.20	Matched[5418]
YOR144C	ELG1	"Protein required for S phase progression and telomere homeostasis, forms an alternative replication factor C complex important for DNA replication and genome integrity; involved in homologous recombination-mediated DNA repair"	Verified	chr15:602718-605093	602718-605093	99.1%	52.21	53.49	34.81	29.29	31.41	19.95	52.85	32.05	25.68	0.20	0.13	0.11	-0.32	-0.23	Matched[5419]
YOR146W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; open reading frame overlaps the verified gene PNO1/YOR145C"	Dubious	chr15:605874-606179	605874-606179	99.3%	368.77	184.39	204.14	158.05	32.93	9.88	276.58	181.09	21.40	1.02	0.74	0.09	-3.08	-0.14	Matched[5420]
YOR145C	PNO1	"Essential nucleolar protein required for pre-18S rRNA processing, interacts with Dim1p, an 18S rRNA dimethyltransferase, and also with Nob1p, which is involved in proteasome biogenesis; contains a KH domain"	Verified	chr15:605348-606172	605348-606172	99.1%	413.52	241.02	254.47	173.73	44.04	22.02	327.27	214.10	33.03	1.21	0.87	0.14	-2.70	-3.09	Matched[5420]
YOR147W	MDM32	"Mitochondrial inner membrane protein with similarity to Mdm31p, required for normal mitochondrial morphology and inheritance; interacts genetically with MMM1, MDM10, MDM12, and MDM34"	Verified	chr15:606608-608476	606608-608476	99.1%	137.73	143.13	131.79	137.19	156.09	158.79	140.43	134.49	157.44	0.52	0.55	0.65	0.23	0.43	Frag<80[5421]
YOR148C	SPP2	"Essential protein that promotes the first step of splicing and is required for the final stages of spliceosome maturation; interacts with Prp2p, which may release Spp2p from the spliceosome following the first cleavage reaction"	Verified	chr15:608641-609198	608641-609198	99.4%	315.50	254.21	239.78	171.27	257.81	138.82	284.86	205.53	198.32	1.05	0.83	0.82	-0.05	-0.73	Matched[5422]
YOR149C	SMP3	"Alpha 1,2-mannosyltransferase involved in glycosyl phosphatidyl inositol (GPI) biosynthesis; required for addition of the fourth, side branching mannose to the GPI core structure"	Verified	chr15:609839-611389	609839-611389	98.8%	104.36	126.54	90.01	69.14	67.84	45.01	115.45	79.58	56.42	0.43	0.32	0.23	-0.50	-0.48	Matched[5423]
YOR150W	MRPL23	Mitochondrial ribosomal protein of the large subunit	Verified	chr15:612000-612491	612000-612491	98.8%	397.22	388.99	362.23	380.76	520.71	349.88	393.11	371.49	435.30	1.45	1.51	1.80	0.23	0.37	Matched[5424]
YOR151C	RPB2	"RNA polymerase II second largest subunit B150, part of central core; similar to bacterial beta subunit"	Verified	chr15:612998-616672	612998-616672	99.2%	478.85	406.40	413.54	381.71	265.36	249.71	442.63	397.62	257.53	1.63	1.61	1.07	-0.63	-0.56	Frag>80[5425,5426,5427]
YOR152C		Putative protein of unknown function; has no similarity to any known protein; YOR152C is not an essential gene	Uncharacterized	chr15:617519-618289	617519-618289	98.7%	120.88	119.57	101.17	39.42	248.33	118.25	120.22	70.29	183.29	0.44	0.29	0.76	1.38	1.69	Matched[5428]
YOR153W	PDR5	"Plasma membrane ATP-binding cassette (ABC) transporter, short-lived multidrug transporter actively regulated by Pdr1p; also involved in steroid transport, cation resistance, and cellular detoxification during exponential growth"	Verified	chr15:619841-624376	619841-624376	98.4%	1079.49	743.56	880.27	595.66	465.46	539.63	911.53	737.96	502.54	3.36	3.00	2.08	-0.55	0.28	Frag>80[5430,5431,5432]
YOR154W	SLP1	Integral membrane protein of unknown function; member of the SUN-like family of proteins	Uncharacterized	chr15:624730-626493	624730-626493	98.6%	64.37	59.77	51.73	40.23	21.84	21.84	62.07	45.98	21.84	0.23	0.19	0.09	-1.07	-0.75	Matched[5433]
YOR155C	ISN1	"Inosine 5'-monophosphate (IMP)-specific 5'-nucleotidase, catalyzes the breakdown of IMP to inosine, does not show similarity to known 5'-nucleotidases from other organisms"	Verified	chr15:626629-627981	626629-627981	99.0%	221.63	291.03	244.01	225.36	368.63	270.13	256.33	234.69	319.38	0.95	0.95	1.32	0.44	0.51	Matched[5434]
YOR156C	NFI1	"SUMO ligase, catalyzes the covalent attachment of SUMO (Smt3p) to proteins; involved in maintenance of proper telomere length"	Verified	chr15:628361-630541	628361-630541	98.5%	49.83	60.07	54.95	50.76	46.10	36.32	54.95	52.86	41.21	0.20	0.21	0.17	-0.36	0.49	Matched[5435]
YOR157C	PUP1	Endopeptidase with trypsin-like activity that cleaves after basic residues; beta-type subunit of 20S proteasome synthesized as a proprotein before being proteolytically processed for assembly into 20S particle; human homolog is subunit Z	Verified	chr15:630967-631752	630967-631752	99.0%	673.27	570.48	702.82	614.17	1042.03	758.07	621.87	658.49	900.05	2.30	2.67	3.73	0.45	0.58	Frag>80[5436,5437]
YOR158W	PET123	"Mitochondrial ribosomal protein of the small subunit; PET123 exhibits genetic interactions with PET122, which encodes a COX3 mRNA-specific translational activator"	Verified	chr15:632165-633121	632165-633121	98.9%	323.45	366.79	381.59	365.73	554.94	358.34	345.12	373.66	456.64	1.27	1.52	1.89	0.29	0.24	Matched[5438]
YOR159C	SME1	"Core Sm protein Sm E; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm E"	Verified	chr15:633283-633567	633283-633567	99.5%	285.76	229.31	254.01	208.14	229.31	257.53	257.53	231.07	243.42	0.95	0.94	1.01	0.08	-0.27	Matched[5439]
YOR160W	MTR10	"Nuclear import receptor, mediates the nuclear localization of proteins involved in mRNA-nucleus export; promotes dissociation of mRNAs from the nucleus-cytoplasm mRNA shuttling protein Npl3p"	Verified	chr15:633840-636758	633840-636758	99.1%	102.71	118.28	81.62	98.91	111.02	125.89	110.50	90.26	118.45	0.41	0.37	0.49	0.39	0.84	Matched[5440]
YOR161W-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr15:637575-637655	637575-637655	99.2%	111.98	111.98	149.30	111.98	1393.47	1231.73	111.98	130.64	1312.60	0.41	0.53	5.44	3.33	NaN	Covered/w/another[5441]
YOR161W-B		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr15:637976-638236	637976-638236	98.5%	70.00	58.34	116.67	120.56	933.40	859.50	64.17	118.62	896.45	0.24	0.48	3.71	2.92	NaN	Covered/w/another[5441]
YOR161C	PNS1	"Protein of unknown function; has similarity to Torpedo californica tCTL1p, which is postulated to be a choline transporter, neither null mutation nor overexpression affects choline transport"	Verified	chr15:636940-638559	636940-638559	98.5%	98.97	109.62	157.85	148.46	1457.64	1081.17	104.30	153.16	1269.41	0.39	0.62	5.26	3.05	3.21	Matched[5441]
YOR161C-C		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr15:639122-639268	639122-639268	98.4%	27.66	20.74	6.91	0.00	13.83	13.83	24.20	3.46	13.83	0.09	0.01	0.06	2.00	NaN	Matched[5442]
YOR162C	YRR1	"Zn2-Cys6 zinc-finger transcription factor that activates genes involved in multidrug resistance; paralog of Yrm1p, acting on an overlapping set of target genes"	Verified	chr15:639561-641993	639561-641993	99.1%	63.88	66.78	58.48	55.58	108.67	93.74	65.33	57.03	101.20	0.24	0.23	0.42	0.83	1.40	Matched[5443]
YOR163W	DDP1	"Diadenosine polyphosphate hydrolase, member of the MutT family of nucleotide hydrolases with high specificity for diadenosine hexa- and pentaphosphates, required for efficient hydrolysis of diphosphorylated inositol polyphosphates"	Verified	chr15:642742-643308	642742-643308	98.3%	518.35	559.60	559.60	577.54	760.48	523.73	538.97	568.57	642.10	1.99	2.31	2.66	0.18	0.42	Matched[5444]
YOR164C		Protein of unknown function; interacts with Mdy2p	Verified	chr15:643395-644333	643395-644333	99.5%	476.42	449.66	437.88	396.13	463.58	351.16	463.04	417.00	407.37	1.71	1.69	1.69	-0.03	0.24	Matched[5445]
YOR165W	SEY1	"Protein of unknown function, contains two predicted GTP-binding motifs GXXXXGKS and DXXG near the N-terminus, homolog of the Arabidopsis gene RHD3 (Root Hair Defective)"	Verified	chr15:644567-646897	644567-646897	98.7%	308.04	289.36	292.40	287.62	169.44	126.00	298.70	290.01	147.72	1.10	1.18	0.61	-0.97	-0.74	Matched[5446]
YOR166C	SWT1	Protein of unknown function; involved in transcription associated process; interacts genetically and physically with the TREX complex and RNA polymerase II; contains a PINc domain (PilT N terminus); localizes in the nucleus	Verified	chr15:647127-648503	647127-648503	99.2%	100.99	97.33	87.09	79.04	49.03	33.66	99.16	83.06	41.35	0.37	0.34	0.17	-1.01	-1.03	Matched[5447]
YOR167C	RPS28A	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps28Bp and has similarity to rat S28 ribosomal protein	Verified	chr15:648805-649008	648805-649008	94.3%	10300.56	9152.01	9604.16	9094.85	4131.66	4168.04	9726.29	9349.50	4149.85	35.90	37.95	17.19	-1.17	-2.49	Matched[5448]
YOR168W	GLN4	"Glutamine tRNA synthetase, monomeric class I tRNA synthetase that catalyzes the specific glutaminylation of tRNA(Glu); N-terminal domain proposed to be involved in enzyme-tRNA interactions"	Verified	chr15:649304-651733	649304-651733	98.8%	636.25	450.42	532.92	482.08	220.42	217.08	543.33	507.50	218.75	2.01	2.06	0.91	-1.21	-0.80	Matched[5449]
YOR169C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; open reading frame overlaps the verified gene GLN4/YOR168W"	Dubious	chr15:651377-651841	651377-651841	99.0%	956.18	656.28	671.50	691.05	352.05	282.51	806.23	681.27	317.28	2.98	2.77	1.31	-1.10	0.00	Covered/w/another[5449]
YOR170W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene LCB4"	Dubious	chr15:651859-652164	651859-652164	99.6%	242.82	246.10	262.51	193.60	239.54	196.88	244.46	228.06	218.21	0.90	0.93	0.90	-0.06	0.04	Covered/w/another[5450]
YOR171C	LCB4	"Sphingoid long-chain base kinase, responsible for synthesis of long-chain base phosphates, which function as signaling molecules, regulates synthesis of ceramide from exogenous long-chain bases, localizes to the Golgi and late endosomes"	Verified	chr15:652011-653885	652011-653885	99.2%	184.50	169.44	167.82	177.51	159.76	169.98	176.97	172.67	164.87	0.65	0.70	0.68	-0.07	0.38	Matched[5450]
YOR172W	YRM1	"Zn2-Cys6 zinc-finger transcription factor that activates genes involved in multidrug resistance; paralog of Yrr1p, acting on an overlapping set of target genes"	Verified	chr15:654211-656571	654211-656571	98.8%	97.34	101.20	95.62	78.90	106.34	77.18	99.27	87.26	91.76	0.37	0.35	0.38	0.07	0.77	Matched[5451]
YOR173W	DCS2	"Non-essential, stress induced regulatory protein containing a HIT (histidine triad) motif; modulates m7G-oligoribonucleotide metabolism; inhibits Dcs1p; regulated by Msn2p, Msn4p, and the Ras-cAMP-cAPK signaling pathway, similar to Dcs1p."	Verified	chr15:657265-658326	657265-658326	98.5%	105.15	359.44	224.65	227.52	2812.40	1791.44	232.30	226.08	2301.92	0.86	0.92	9.54	3.35	3.15	Matched[5453]
YOR174W	MED4	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation	Verified	chr15:658748-659602	658748-659602	98.5%	157.88	146.01	148.38	156.69	138.89	65.29	151.94	152.54	102.09	0.56	0.62	0.42	-0.58	-1.07	Matched[5454]
YOR175C	ALE1	"Lysophospholipid acyltransferase, partially redundant with Slc1p; member of MBOAT family of membrane-bound O-acyltransferases; may be involved in fatty acid exchange at the sn-2 position of mature glycerophospholipids"	Verified	chr15:659816-661675	659816-661675	99.1%	330.51	541.08	321.82	334.31	257.24	161.18	435.79	328.06	209.21	1.61	1.33	0.87	-0.65	-0.55	Matched[5455]
YOR176W	HEM15	"Ferrochelatase, a mitochondrial inner membrane protein, catalyzes the insertion of ferrous iron into protoporphyrin IX, the eighth and final step in the heme biosynthetic pathway"	Verified	chr15:662402-663583	662402-663583	98.8%	470.00	751.66	509.38	568.45	737.10	574.45	610.83	538.92	655.78	2.25	2.19	2.72	0.28	0.27	Matched[5456]
YOR177C	MPC54	"Component of the meiotic outer plaque, a membrane-organizing center which is assembled on the cytoplasmic face of the spindle pole body during meiosis II and triggers the formation of the prospore membrane; potential Cdc28p substrate"	Verified	chr15:665786-667180	665786-667180	99.3%	10.82	16.60	14.43	13.71	44.74	36.80	13.71	14.07	40.77	0.05	0.06	0.17	1.53	1.58	Frag>80[5458]
YOR178C	GAC1	"Regulatory subunit for Glc7p type-1 protein phosphatase (PP1), tethers Glc7p to Gsy2p glycogen synthase, binds Hsf1p heat shock transcription factor, required for induction of some HSF-regulated genes under heat shock"	Verified	chr15:667861-670242	667861-670242	98.8%	66.31	108.39	104.14	110.09	267.37	426.34	87.35	107.12	346.85	0.32	0.43	1.44	1.70	1.94	Covered[5459]
YOR179C	SYC1	"Subunit of the APT subcomplex of cleavage and polyadenylation factor, may have a role in 3' end formation of both polyadenylated and non-polyadenylated RNAs"	Verified	chr15:671846-672412	671846-672412	99.4%	122.43	124.21	110.01	62.10	170.34	90.49	123.32	86.06	130.42	0.46	0.35	0.54	0.60	0.10	Matched[5461]
YOR180C	DCI1	"Peroxisomal delta(3,5)-delta(2,4)-dienoyl-CoA isomerase, involved in fatty acid metabolism, contains peroxisome targeting signals at amino and carboxy termini"	Verified	chr15:674353-675168	674353-675168	99.2%	74.10	87.69	59.28	50.64	58.05	35.82	80.90	54.96	46.93	0.30	0.22	0.19	-0.23	-0.42	Covered/w/another[5462]
YOR181W	LAS17	"Actin assembly factor, activates the Arp2/3 protein complex that nucleates branched actin filaments; localizes with the Arp2/3 complex to actin patches; homolog of the human Wiskott-Aldrich syndrome protein (WASP)"	Verified	chr15:675940-677841	675940-677841	98.8%	171.91	171.38	179.89	172.97	201.71	221.40	171.64	176.43	211.56	0.63	0.72	0.88	0.26	0.82	Covered/w/another[5462]
YOR182C	RPS30B	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps30Ap and has similarity to rat S30 ribosomal protein	Verified	chr15:678192-678794	678192-678380,678792-678794	55.5%	9845.91	7189.68	7837.31	6251.08	2797.03	2243.25	8517.79	7044.19	2520.14	31.44	28.59	10.44	-1.48	-2.38	Matched[5463]
YOR183W	FYV12	"Protein of unknown function, required for survival upon exposure to K1 killer toxin"	Uncharacterized	chr15:678873-679262	678873-679262	98.6%	23.41	5.20	2.60	7.80	13.01	10.40	14.31	5.20	11.70	0.05	0.02	0.05	1.17	-0.38	Overlap[5464]
YOR184W	SER1	"3-phosphoserine aminotransferase, catalyzes the formation of phosphoserine from 3-phosphohydroxypyruvate, required for serine and glycine biosynthesis; regulated by the general control of amino acid biosynthesis mediated by Gcn4p"	Verified	chr15:679358-680545	679358-680545	98.7%	1425.66	1180.94	1326.75	1120.40	382.85	248.13	1303.30	1223.58	315.49	4.81	4.97	1.31	-1.96	-1.48	Matched[5464]
YOR185C	GSP2	"GTP binding protein (mammalian Ranp homolog) involved in the maintenance of nuclear organization, RNA processing and transport; interacts with Kap121p, Kap123p and Pdr6p (karyophilin betas); Gsp1p homolog that is not required for viability"	Verified	chr15:681445-682107	681445-682107	95.6%	411.62	826.39	548.82	462.08	2062.82	1367.33	619.00	505.45	1715.07	2.29	2.05	7.11	1.76	0.87	Matched[5467]
YOR186W		Putative protein of unknown function; proper regulation of expression during heat stress is sphingolipid-dependent	Uncharacterized	chr15:683112-683546	683112-683546	98.6%	9.33	11.66	11.66	7.00	93.27	55.96	10.49	9.33	74.61	0.04	0.04	0.31	3.00	4.01	Matched[5468]
YOR186C-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr15:683330-683539	683330-683539	98.7%	9.65	14.48	19.30	9.65	96.50	57.90	12.06	14.48	77.20	0.04	0.06	0.32	2.42	NaN	Covered/w/another[5468]
YOR187W	TUF1	"Mitochondrial translation elongation factor Tu; comprises both GTPase and guanine nucleotide exchange factor activities, while these activities are found in separate proteins in S. pombe and humans"	Verified	chr15:684031-685344	684031-685344	98.6%	1106.94	1051.37	1248.21	1289.89	1502.94	1124.70	1079.15	1269.05	1313.82	3.98	5.15	5.44	0.05	0.22	Matched[5469]
YOR188W	MSB1	"Protein involved in positive regulation of both 1,3-beta-glucan synthesis and the Pkc1p-MAPK pathway, potential Cdc28p substrate; multicopy suppressor of temperature-sensitive mutations in CDC24 and CDC42, and of mutations in BEM4"	Verified	chr15:685768-689181	685768-689181	98.8%	120.95	102.57	90.12	78.26	32.31	32.61	111.76	84.19	32.46	0.41	0.34	0.13	-1.37	-0.50	Matched[5470]
YOR189W	IES4	Component of the INO80 chromatiin remodeling complex and target of the Mec1p/Tel1p DNA damage signaling pathway; proposed to link chromatin remodeling to replication checkpoint responses	Verified	chr15:689625-689975	689625-689975	98.3%	298.66	287.06	263.86	321.86	426.24	269.66	292.86	292.86	347.95	1.08	1.19	1.44	0.25	0.14	Matched[5471]
YOR190W	SPR1	"Sporulation-specific exo-1,3-beta-glucanase; contributes to ascospore thermoresistance"	Verified	chr15:690696-692033	690696-692033	98.7%	34.83	40.13	23.47	15.14	23.47	15.14	37.48	19.31	19.31	0.14	0.08	0.08	0.00	0.22	
YOR191W	RIS1	"Member of the SWI/SNF family of DNA-dependent ATPases, plays a role in antagonizing silencing during mating-type switching, contains an N-terminal domain that interacts with Sir4p and a C-terminal SNF2 domain"	Verified	chr15:692476-697335	692476-697335	98.7%	96.98	119.51	85.30	97.61	55.27	90.10	108.25	91.46	72.69	0.40	0.37	0.30	-0.33	0.34	Matched[5473]
YOR192C	THI72	Transporter of thiamine or related compound; shares sequence similarity with Thi7p	Verified	chr15:698769-700568	698769-700568	82.6%	19.50	32.27	14.79	9.41	8.74	12.10	25.88	12.10	10.42	0.10	0.05	0.04	-0.22	0.41	Overlap[5474]
YOR192C-C		Putative protein of unknown function; identified by expression profiling and mass spectrometry	Uncharacterized	chr15:703989-704225	703989-704225	10.4%	122.24	122.24	122.24	122.24	0.00	81.49	122.24	122.24	40.75	0.45	0.50	0.17	-1.58	NaN	Frag<80[5476]
YOR193W	PEX27	"Peripheral peroxisomal membrane protein involved in controlling peroxisome size and number, interacts with homologous protein Pex25p"	Verified	chr15:710447-711577	710447-711577	98.9%	76.85	82.21	68.81	64.34	127.79	79.53	79.53	66.57	103.66	0.29	0.27	0.43	0.64	0.46	Matched[5477]
YOR194C	TOA1	"TFIIA large subunit; involved in transcriptional activation, acts as antirepressor or as coactivator; homologous to largest and second largest subunits of human and Drosophila TFIIA"	Verified	chr15:711684-712544	711684-712544	99.5%	394.65	375.97	375.97	340.94	465.87	360.79	385.31	358.45	413.33	1.42	1.46	1.71	0.21	0.35	Matched[5478]
YOR195W	SLK19	"Kinetochore-associated protein required for normal segregation of chromosomes in meiosis and mitosis; component of the FEAR regulatory network, which promotes Cdc14p release from the nucleolus during anaphase; potential Cdc28p substrate"	Verified	chr15:712867-715332	712867-715332	98.7%	146.62	128.55	128.55	121.98	98.16	58.32	137.59	125.27	78.24	0.51	0.51	0.32	-0.68	-0.54	Covered/w/another[5479]
YOR196C	LIP5	"Protein involved in biosynthesis of the coenzyme lipoic acid, has similarity to E. coli lipoic acid synthase"	Verified	chr15:715594-716838	715594-716838	99.3%	197.32	167.40	152.04	153.65	110.79	90.58	182.36	152.85	100.68	0.67	0.62	0.42	-0.60	-0.50	Covered/w/another[5479]
YOR197W	MCA1	"Putative cysteine protease similar to mammalian caspases, involved in regulation of apoptosis upon hydrogen peroxide treatment"	Verified	chr15:717087-718385	717087-718385	98.7%	461.12	381.53	396.36	355.79	329.26	267.62	421.33	376.07	298.44	1.56	1.53	1.24	-0.33	-0.19	Matched[5480]
YOR198C	BFR1	Component of mRNP complexes associated with polyribosomes; implicated in secretion and nuclear segregation; multicopy suppressor of BFA (Brefeldin A) sensitivity	Verified	chr15:718654-720066	718654-720066	99.2%	1517.04	1113.87	1325.80	1335.08	954.75	869.83	1315.45	1330.44	912.29	4.86	5.40	3.78	-0.54	-0.39	Matched[5481]
YOR199W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr15:720182-720511	720182-720511	99.3%	112.91	155.63	122.06	85.44	73.24	106.80	134.27	103.75	90.02	0.50	0.42	0.37	-0.20	-0.23	Covered/w/another[5481]
YOR200W		Hypothetical protein	Dubious	chr15:720418-720816	720418-720816	99.1%	225.03	303.41	242.73	169.41	103.67	101.14	264.22	206.07	102.40	0.98	0.84	0.42	-1.01	-0.44	
YOR201C	MRM1	"Ribose methyltransferase that modifies a functionally critical, conserved nucleotide in mitochondrial 21S rRNA"	Verified	chr15:720471-721709	720471-721709	99.0%	211.26	239.80	212.07	172.92	83.20	77.49	225.53	192.50	80.34	0.83	0.78	0.33	-1.26	-0.87	Frag>80[5482]
YOR202W	HIS3	"Imidazoleglycerol-phosphate dehydratase, catalyzes the sixth step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts; transcription is regulated by general amino acid control via Gcn4p"	Verified	chr15:721947-722609	721947-722609	98.4%	340.21	580.81	352.47	266.65	139.45	110.34	460.51	309.56	124.90	1.70	1.26	0.52	-1.31	0.04	Covered/w/another[5483]
YOR203W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; overlaps 5' end of essential DED1 gene required for translation initiation"	Dubious	chr15:722566-722919	722566-722919	98.6%	246.45	343.88	212.06	180.54	83.10	94.57	295.16	196.30	88.84	1.09	0.80	0.37	-1.14	-1.27	Covered/w/another[5483]
YOR204W	DED1	"ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase, required for translation initiation of all yeast mRNAs; mutations in human DEAD-box DBY are a frequent cause of male infertility"	Verified	chr15:722912-724726	722912-724726	98.5%	574.93	560.95	453.57	373.03	234.89	303.68	567.94	413.30	269.29	2.10	1.68	1.12	-0.62	0.19	Covered/w/another[5483]
YOR205C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr15:725565-727235	725565-727235	99.2%	112.85	127.34	79.66	67.59	44.66	58.54	120.09	73.63	51.60	0.44	0.30	0.21	-0.51	-0.52	Matched[5484]
YOR206W	NOC2	"Protein that forms a nucleolar complex with Mak21p that binds to 90S and 66S pre-ribosomes, as well as a nuclear complex with Noc3p that binds to 66S pre-ribosomes; both complexes mediate intranuclear transport of ribosomal precursors"	Verified	chr15:727513-729645	727513-729645	98.7%	402.17	183.75	236.93	197.05	23.27	5.22	292.96	216.99	14.24	1.08	0.88	0.06	-3.93	-4.93	Covered/w/another[5485]
YOR207C	RET1	"Second-largest subunit of RNA polymerase III, which is responsible for the transcription of tRNA and 5S RNA genes, and other low molecular weight RNAs"	Verified	chr15:730009-733458	730009-733458	99.2%	191.19	112.26	124.83	116.93	22.80	27.48	151.72	120.88	25.14	0.56	0.49	0.10	-2.27	-1.50	Covered/w/another[5485]
YOR208W	PTP2	Phosphotyrosine-specific protein phosphatase involved in the inactivation of mitogen-activated protein kinase (MAPK) during osmolarity sensing; dephosporylates Hog1p MAPK and regulates its localization; localized to the nucleus	Verified	chr15:733926-736178	733926-736178	99.2%	84.13	116.79	101.13	91.29	197.79	182.57	100.46	96.21	190.18	0.37	0.39	0.79	0.98	1.31	Matched[5486]
YOR209C	NPT1	"Nicotinate phosphoribosyltransferase, acts in the salvage pathway of NAD+ biosynthesis; required for silencing at rDNA and telomeres and has a role in silencing at mating-type loci; localized to the nucleus"	Verified	chr15:736438-737727	736438-737727	99.2%	662.72	584.57	572.84	560.34	283.69	264.93	623.64	566.59	274.31	2.30	2.30	1.14	-1.05	-0.40	Matched[5487]
YOR210W	RPB10	"RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III"	Verified	chr15:738321-738533	738321-738533	98.8%	1088.32	1021.78	950.50	831.68	489.50	465.74	1055.05	891.09	477.62	3.89	3.62	1.98	-0.90	-0.78	Matched[5488]
YOR211C	MGM1	"Mitochondrial GTPase related to dynamin, present in a complex containing Ugo1p and Fzo1p; required for normal morphology of cristae and for stability of Tim11p; homolog of human OPA1 involved in autosomal dominant optic atrophy"	Verified	chr15:738925-741570	738925-741570	99.2%	125.73	140.58	130.68	124.20	111.63	89.53	133.16	127.44	100.58	0.49	0.52	0.42	-0.34	-0.00	Matched[5489]
YOR212W	STE4	"G protein beta subunit, forms a dimer with Ste18p to activate the mating signaling pathway, forms a heterotrimer with Gpa1p and Ste18p to dampen signaling; may recruit Rho1p to the polarized growth site during mating; contains WD40 repeats"	Verified	chr15:742911-744182	742911-744182	98.7%	472.90	448.22	476.88	456.98	244.41	103.50	460.56	466.93	173.95	1.70	1.90	0.72	-1.42	-1.50	Matched[5490]
YOR213C	SAS5	"Subunit of the SAS complex (Sas2p, Sas4p, Sas5p), which  acetylates free histones and nucleosomes and regulates transcriptional silencing; stimulates Sas2p HAT activity"	Verified	chr15:744536-745282	744536-745282	99.1%	174.22	143.15	101.29	78.33	59.42	28.36	158.69	89.81	43.89	0.59	0.36	0.18	-1.03	-1.33	Matched[5491]
YOR214C		Putative protein of unknown function; YOR214C is not an essential gene	Uncharacterized	chr15:745594-746304	745594-746304	98.9%	2.84	4.26	2.84	2.84	1.42	7.11	3.55	2.84	4.26	0.01	0.01	0.02	0.58	-0.73	Frag<80[5492]
YOR215C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr15:746726-747283	746726-747283	99.2%	625.21	724.59	856.50	740.85	1534.11	981.18	674.90	798.67	1257.64	2.49	3.24	5.21	0.66	0.16	Matched[5493]
YOR216C	RUD3	Golgi matrix protein involved in the structural organization of the cis-Golgi; interacts genetically with COG3 and USO1	Verified	chr15:747526-748980	747526-748980	99.4%	188.12	168.06	181.89	168.75	189.50	146.62	178.09	175.32	168.06	0.66	0.71	0.70	-0.06	0.42	Matched[5494]
YOR217W	RFC1	"Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon"	Verified	chr15:749302-751887	749302-751887	98.6%	224.65	182.70	203.48	184.27	115.27	106.25	203.68	193.88	110.76	0.75	0.79	0.46	-0.81	-0.05	Matched[5495]
YOR218C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; open reading frame overlaps the verified gene RFC1/YOR217W"	Dubious	chr15:751477-751896	751477-751896	98.4%	411.17	338.61	365.21	331.35	217.68	174.14	374.89	348.28	195.91	1.38	1.41	0.81	-0.83	-0.07	Covered/w/another[5495]
YOR219C	STE13	"Dipeptidyl aminopeptidase, Golgi integral membrane protein that cleaves on the carboxyl side of repeating -X-Ala- sequences, required for maturation of alpha factor, transcription is induced by a-factor"	Verified	chr15:752215-755010	752215-755010	99.1%	127.04	143.28	124.88	119.46	142.20	157.00	135.16	122.17	149.60	0.50	0.50	0.62	0.29	0.71	Matched[5496]
YOR220W		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and is induced in response to the DNA-damaging agent MMS	Uncharacterized	chr15:755329-756126	755329-756126	99.0%	148.07	259.44	227.80	234.13	977.01	873.23	203.75	230.96	925.12	0.75	0.94	3.83	2.00	2.13	Matched[5497]
YOR221C	MCT1	"Predicted malonyl-CoA:ACP transferase, putative component of a type-II mitochondrial fatty acid synthase that produces intermediates for phospholipid remodeling"	Verified	chr15:756477-757559	756477-757559	98.9%	161.52	263.30	177.40	182.07	262.36	222.21	212.41	179.73	242.29	0.78	0.73	1.00	0.43	0.65	Matched[5498]
YOR222W	ODC2	"Mitochondrial inner membrane transporter, exports 2-oxoadipate and 2-oxoglutarate from the mitochondrial matrix to the cytosol for use in lysine and glutamate biosynthesis and in lysine catabolism"	Verified	chr15:758331-759254	758331-759254	98.5%	286.76	248.31	224.13	181.29	88.99	29.66	267.53	202.71	59.33	0.99	0.82	0.25	-1.77	-1.55	Frag>80[5499,5500,5501]
YOR223W		Putative protein of unknown function	Uncharacterized	chr15:759783-760661	759783-760661	98.2%	118.17	140.18	118.17	111.22	220.12	149.45	129.18	114.69	184.78	0.48	0.47	0.77	0.69	0.52	Matched[5502]
YOR224C	RPB8	"RNA polymerase subunit ABC14.5, common to RNA polymerases I, II, and III"	Verified	chr15:760826-761266	760826-761266	98.5%	1003.93	757.56	923.34	794.40	363.81	324.67	880.74	858.87	344.24	3.25	3.49	1.43	-1.32	-1.03	Matched[5503]
YOR225W		"Dubious open reading frame, unlikely to encode a functional protein; based on available experimental and comparative sequence data"	Dubious	chr15:761393-761722	761393-761722	99.1%	330.23	314.94	330.23	284.37	235.44	113.14	322.59	307.30	174.29	1.19	1.25	0.72	-0.82	0.01	Matched[5504]
YOR226C	ISU2	"Conserved protein of the mitochondrial matrix, required for synthesis of mitochondrial and cytosolic iron-sulfur proteins, performs a scaffolding function in mitochondria during Fe/S cluster assembly; isu1 isu2 double mutant is inviable"	Verified	chr15:761615-762085	761615-762085	98.6%	406.96	314.37	437.11	402.66	279.92	193.79	360.67	419.88	236.86	1.33	1.70	0.98	-0.83	-0.62	Matched[5505]
YOR227W		"Protein of unknown function that may interact with ribosomes, based on co-purification experiments; authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr15:762826-766566	762826-766566	98.9%	166.72	257.25	208.88	187.26	214.28	251.03	211.99	198.07	232.66	0.78	0.80	0.96	0.23	0.69	Matched[5506]
YOR228C		"Protein of unknown function, localized to the mitochondrial outer membrane"	Verified	chr15:766870-767778	766870-767778	98.7%	59.10	98.13	98.13	94.78	238.63	217.44	78.61	96.45	228.04	0.29	0.39	0.94	1.24	1.40	Covered/w/another[5507]
YOR229W	WTM2	Transcriptional repressor involved in regulation of meiosis and silencing; contains WD repeats	Verified	chr15:768410-769813	768410-769813	97.9%	120.08	182.66	97.52	82.96	53.12	41.48	151.37	90.24	47.30	0.56	0.37	0.20	-0.93	-1.18	Covered/w/another[5507]
YOR230W	WTM1	"Transcriptional repressor involved in regulation of meiosis and silencing, required for nuclear localization of the ribonucleotide reductase small subunit Rnr2p and Rnr4p; contains WD repeats"	Verified	chr15:770801-772114	770801-772114	98.8%	1686.06	3115.63	1964.89	1868.61	2889.18	2957.73	2400.85	1916.75	2923.46	8.86	7.78	12.11	0.61	1.03	Matched[5508]
YOR231W	MKK1	"Mitogen-activated kinase kinase involved in protein kinase C signaling pathway that controls cell integrity; upon activation by Bck1p phosphorylates downstream target, Slt2p; functionally redundant with Mkk2p"	Verified	chr15:772602-774128	772602-774128	98.8%	139.23	142.55	135.25	101.44	105.42	78.23	140.89	118.35	91.83	0.52	0.48	0.38	-0.37	-0.02	Matched[5509]
YOR231C-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr15:773164-773364	773164-773364	98.4%	111.23	131.45	146.62	101.12	65.73	45.50	121.34	123.87	55.61	0.45	0.50	0.23	-1.16	NaN	Covered/w/another[5509]
YOR232W	MGE1	Protein of the mitochondrial matrix involved in protein import into mitochondria; acts as a cochaperone and a nucleotide release factor for Ssc1p; homolog of E. coli GrpE	Verified	chr15:774574-775260	774574-775260	98.5%	1285.40	1032.75	1210.05	1047.53	706.23	465.40	1159.07	1128.79	585.82	4.28	4.58	2.43	-0.95	-1.36	Matched[5510]
YOR233W	KIN4	"Serine/threonine protein kinase that inhibits the mitotic exit network (MEN) when the spindle position checkpoint is activated; localized asymmetrically to mother cell cortex, spindle pole body and bud neck"	Verified	chr15:775847-778249	775847-778249	98.7%	110.51	121.06	89.84	57.79	37.54	23.20	115.78	73.82	30.37	0.43	0.30	0.13	-1.28	-0.96	Matched[5511]
YOR234C	RPL33B	"Ribosomal protein L37 of the large (60S) ribosomal subunit, nearly identical to Rpl33Ap and has similarity to rat L35a; rpl33b null mutant exhibits normal growth while rpl33a rpl33b double null mutant is inviable"	Verified	chr15:778556-779406	778556-778860,779388-779406	91.0%	4185.42	3313.74	3449.41	2615.04	773.32	430.75	3749.58	3032.22	602.04	13.84	12.31	2.49	-2.33	-2.76	Matched[5512]
YOR235W		Hypothetical protein; null mutant displays increased levels of spontaneous Rad52 foci	Dubious	chr15:779871-780185	779871-780185	99.5%	0.00	6.38	0.00	3.19	6.38	0.00	3.19	1.60	3.19	0.01	0.01	0.01	1.00	-0.60	Frag<80[5513]
YOR236W	DFR1	"Dihydrofolate reductase, part of the dTTP biosynthetic pathway, involved in folate metabolism, possibly required for mitochondrial function"	Verified	chr15:780907-781542	780907-781542	98.5%	201.12	183.56	204.31	166.00	75.02	38.31	192.34	185.16	56.66	0.71	0.75	0.23	-1.71	-1.55	Matched[5514]
YOR237W	HES1	Protein implicated in the regulation of ergosterol biosynthesis; one of a seven member gene family with a common essential function and non-essential unique functions; similar to human oxysterol binding protein (OSBP)	Verified	chr15:781995-783299	781995-783299	98.4%	7.01	16.35	5.45	3.11	4.67	5.45	11.68	4.28	5.06	0.04	0.02	0.02	0.24	0.53	
YOR238W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr15:783678-784589	783678-784589	99.0%	119.63	120.74	90.83	81.97	122.95	77.54	120.18	86.40	100.24	0.44	0.35	0.42	0.21	0.16	Matched[5515]
YOR239W	ABP140	"Nonessential protein that binds actin filaments and localizes to actin patches and cables, has similarity to S-adenosylmethionine (AdoMet)-dependent methyltransferases"	Verified	chr15:784858-786745	784858-786745	98.4%	699.01	600.00	526.28	514.44	355.70	384.75	649.51	520.36	370.22	2.40	2.11	1.53	-0.49	1.10	Covered/w/another[5516]
YOR241W	MET7	"Folylpolyglutamate synthetase, catalyzes extension of the glutamate chains of the folate coenzymes, required for methionine synthesis and for maintenance of mitochondrial DNA"	Verified	chr15:786996-788642	786996-788642	98.8%	226.71	232.85	195.38	160.97	149.30	140.08	229.78	178.17	144.69	0.85	0.72	0.60	-0.30	-0.22	Covered/w/another[5516]
YOR242C	SSP2	Sporulation specific protein that localizes to the spore wall; required for sporulation at a point after meiosis II and during spore wall formation; SSP2 expression is induced midway in meiosis	Verified	chr15:788743-789858	788743-789858	99.4%	28.85	25.24	17.13	7.21	18.03	9.02	27.05	12.17	13.52	0.10	0.05	0.06	0.15	0.67	Frag<80[5517]
YOR243C	PUS7	"Pseudouridine synthase, catalyzes pseudouridylation at position 35 in U2 snRNA, position 13 in cytoplasmic tRNAs, and position 35 in pre-tRNA(Tyr); Asp(256) mutation abolishes activity; conserved in archaea, some bacteria, and vertebrates"	Verified	chr15:790212-792242	790212-792242	99.2%	373.20	202.48	265.01	255.09	37.72	9.43	287.84	260.05	23.57	1.06	1.06	0.10	-3.46	-3.33	Matched[5518]
YOR244W	ESA1	Histone acetyltransferase catalytic subunit of the native multisubunit complex (NuA4) that acetylates four conserved internal lysines of histone H4 N-terminal tail; required for cell cycle progression	Verified	chr15:792532-793869	792532-793869	98.7%	126.42	121.88	121.12	107.50	131.72	96.90	124.15	114.31	114.31	0.46	0.46	0.47	0.00	0.28	Matched[5519]
YOR245C	DGA1	"Diacylglycerol acyltransferase, catalyzes the terminal step of triacylglycerol (TAG) formation, acylates diacylglycerol using acyl-CoA as an acyl donor, localized to lipid particles"	Verified	chr15:794077-795333	794077-795333	99.0%	138.19	154.26	155.87	115.69	351.10	195.23	146.22	135.78	273.17	0.54	0.55	1.13	1.01	1.03	Matched[5520]
YOR246C		"Protein with similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts"	Uncharacterized	chr15:795802-796794	795802-796794	98.8%	455.62	404.65	411.79	317.00	236.47	142.70	430.14	364.39	189.59	1.59	1.48	0.79	-0.94	-0.95	Frag>80[5521,5522]
YOR247W	SRL1	"Mannoprotein that exhibits a tight association with the cell wall, required for cell wall stability in the absence of GPI-anchored mannoproteins; has a high serine-threonine content; expression is induced in cell wall mutants"	Verified	chr15:797677-798309	797677-798309	99.3%	3779.68	3587.19	3711.27	3192.68	1282.16	917.88	3683.44	3451.98	1100.02	13.60	14.01	4.56	-1.65	-1.57	Frag>80[5523,5524]
YOR248W		"Dubious open reading frame, unlikely to encode a functional protein; based on available experimental and comparative sequence data"	Dubious	chr15:798014-798316	798014-798316	99.1%	3886.22	3729.71	3909.53	3260.16	1342.03	939.09	3807.96	3584.85	1140.56	14.06	14.55	4.73	-1.65	-1.43	Matched[5524]
YOR249C	APC5	"Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition"	Verified	chr15:798675-800732	798675-800732	99.3%	72.89	77.78	65.55	64.57	83.16	63.60	75.34	65.06	73.38	0.28	0.26	0.30	0.17	0.04	Matched[5525]
YOR250C	CLP1	"Subunit of cleavage factor I (CFI), involved in both the endonucleolyitc cleavage and polyadenylation steps of mRNA 3'-end maturation"	Verified	chr15:800971-802308	800971-802308	99.0%	92.84	87.55	79.25	71.70	119.25	98.12	90.19	75.48	108.69	0.33	0.31	0.45	0.53	0.43	Matched[5526]
YOR251C		"Putative protein of unknown function with similarity to human thiosulfate sulfurtransferase, an enzyme that catalyzes the transfer of sulfur from thiosulfate to cyanide, forming sulfite and thiocyanate; YOR251C is a non-essential gene"	Uncharacterized	chr15:802551-803465	802551-803465	98.9%	298.27	266.24	287.23	276.18	223.15	177.86	282.26	281.70	200.51	1.04	1.14	0.83	-0.49	-0.40	Frag>80[5527,5528]
YOR252W	TMA16	Protein of unknown function that associates with ribosomes	Verified	chr15:803668-804204	803668-804204	98.2%	275.01	121.38	166.90	117.59	43.62	18.97	198.20	142.25	31.29	0.73	0.58	0.13	-2.18	-2.03	Matched[5529]
YOR253W	NAT5	"Subunit of the N-terminal acetyltransferase NatA (Nat1p, Ard1p, Nat5p); N-terminally acetylates many proteins, which influences multiple processes such as the cell cycle, heat-shock resistance, mating, sporulation, and telomeric silencing"	Verified	chr15:804378-804908	804378-804908	98.9%	498.65	443.46	492.94	411.10	439.65	359.71	471.05	452.02	399.68	1.74	1.83	1.66	-0.18	-0.66	Matched[5530]
YOR254C	SEC63	"Essential subunit of Sec63 complex (Sec63p, Sec62p, Sec66p and Sec72p); with Sec61 complex, Kar2p/BiP and Lhs1p forms a channel competent for SRP-dependent and post-translational SRP-independent protein targeting and import into the ER"	Verified	chr15:805033-807024	805033-807024	99.3%	667.65	538.67	605.94	582.17	327.76	225.58	603.16	594.06	276.67	2.23	2.41	1.15	-1.10	-0.73	Frag>80[5530,5531]
YOR255W	OSW1	Protein involved in sporulation; required for the construction of the outer spore wall layers; required for proper localization of Spo14p	Verified	chr15:807272-808108	807272-808108	98.7%	0.00	1.21	1.21	0.00	3.63	6.05	0.61	0.61	4.84	0.00	0.00	0.02	3.00	1.66	Frag<80[5532]
YOR256C	TRE2	Protein that functions with Tre1p to regulate ubiquitylation and vacuolar degradation of the metal transporter Smf1p; has similarity to transferrin receptors; inviability of null mutant in systematic studies is due to proximity to CDC31	Verified	chr15:808254-810683	808254-810683	99.3%	104.03	120.19	107.34	97.81	142.99	114.39	112.11	102.58	128.69	0.41	0.42	0.53	0.33	0.62	Matched[5533]
YOR257W	CDC31	"Calcium-binding component of the spindle pole body (SPB) half-bridge, required for SPB duplication in mitosis and meiosis II; homolog of mammalian centrin; interacts with Kar1p"	Verified	chr15:811008-811493	811008-811493	98.4%	223.79	263.53	175.69	165.23	328.37	232.16	243.66	170.46	280.26	0.90	0.69	1.16	0.72	0.52	Matched[5534]
YOR258W	HNT3	"Member of the third branch of the histidine triad (HIT) superfamily of nucleotide-binding proteins; similar to Aprataxin, a Hint related protein that is mutated in individuals with ataxia with oculomotor apraxia"	Verified	chr15:811671-812324	811671-812324	98.9%	55.66	51.02	52.57	29.38	94.32	58.76	53.34	40.97	76.54	0.20	0.17	0.32	0.90	0.37	Matched[5535]
YOR259C	RPT4	One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; required for spindle pole body duplication; localized mainly to the nucleus throughout the cell cycle	Verified	chr15:812395-813708	812395-813708	99.3%	584.08	510.49	583.31	594.81	933.60	624.70	547.28	589.06	779.15	2.02	2.39	3.23	0.40	0.50	Matched[5536]
YOR260W	GCD1	"Gamma subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression"	Verified	chr15:813984-815720	813984-815720	98.9%	348.02	246.17	263.63	207.76	94.86	81.48	297.10	235.70	88.17	1.10	0.96	0.37	-1.42	-0.96	Matched[5537]
YOR261C	RPN8	"Essential, non-ATPase regulatory subunit of the 26S proteasome; has similarity to the human p40 proteasomal subunit and to another S. cerevisiae regulatory subunit, Rpn11p"	Verified	chr15:815915-816931	815915-816931	99.3%	1032.42	878.00	1044.30	924.52	1900.52	1058.15	955.21	984.41	1479.34	3.53	4.00	6.13	0.59	-0.14	Matched[5538]
YOR262W		Cytoplasmic protein of unknown function; essential gene with similarity to YLR243W; contains an ATP/GTP binding site motif	Uncharacterized	chr15:817291-818334	817291-818334	98.5%	159.44	129.30	134.16	77.77	84.58	25.28	144.37	105.97	54.93	0.53	0.43	0.23	-0.95	-1.02	Matched[5539]
YOR264W	DSE3	"Daughter cell-specific protein, may help establish daughter fate"	Verified	chr15:818865-820157	818865-820157	98.8%	212.04	194.82	176.83	136.92	204.99	153.35	203.43	156.88	179.17	0.75	0.64	0.74	0.19	0.58	Frag>80[5540,5541,5542,5543]
YOR263C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF DES3/YOR264W"	Dubious	chr15:818756-819163	818756-819163	98.6%	149.16	134.24	104.41	77.07	121.81	84.52	141.70	90.74	103.17	0.52	0.37	0.43	0.19	-0.41	Matched[5541]
YOR265W	RBL2	"Protein involved in microtubule morphogenesis, required for protection from excess free beta-tubulin; proposed to be involved the folding of beta-tubulin; similar to mouse beta-tubulin cofactor A"	Verified	chr15:820453-820773	820453-820773	98.5%	360.62	328.98	332.15	278.37	411.23	259.39	344.80	305.26	335.31	1.27	1.24	1.39	0.14	0.01	Matched[5543]
YOR266W	PNT1	"Mitochondrial inner membrane protein involved in export of proteins from the mitochondrial matrix; overexpression of PNT1 confers resistance to the anti-Pneumocystis carinii drug pentamidine, and deletion confers increased sensitivity"	Verified	chr15:821022-822293	821022-822293	98.9%	99.40	96.22	85.88	77.93	65.21	52.49	97.81	81.91	58.85	0.36	0.33	0.24	-0.48	-0.41	Matched[5544]
YOR267C	HRK1	Protein kinase implicated in activation of the plasma membrane H(+)-ATPase Pma1p in response to glucose metabolism; plays a role in ion homeostasis	Verified	chr15:822587-824866	822587-824866	97.1%	188.80	167.57	216.81	224.03	466.59	543.82	178.19	220.42	505.20	0.66	0.89	2.09	1.20	1.81	Matched[5545]
YOR268C		Putative protein of unknown function; sporulation is abnormal in homozygous diploid; YOR268C is not an essential gene	Uncharacterized	chr15:825533-825931	825533-825931	98.4%	0.00	0.00	2.55	0.00	94.26	50.95	0.00	1.27	72.60	0.00	0.01	0.30	5.83	0.12	Matched[5546]
YOR269W	PAC1	"Protein involved in nuclear migration, part of the dynein/dynactin pathway; targets dynein to microtubule tips, which is necessary for sliding of microtubules along bud cortex; synthetic lethal with bni1; homolog of human LIS1"	Verified	chr15:826384-827868	826384-827868	98.9%	57.88	58.56	59.24	40.86	23.15	18.39	58.22	50.05	20.77	0.21	0.20	0.09	-1.27	-0.78	Matched[5547]
YOR270C	VPH1	"Subunit a of vacuolar-ATPase V0 domain, one of two isoforms (Vph1p and Stv1p); Vph1p is located in V-ATPase complexes of the vacuole while Stv1p is located in V-ATPase complexes of the Golgi and endosomes"	Verified	chr15:828051-830573	828051-830573	99.0%	1112.58	1213.47	915.61	853.95	632.56	640.97	1163.03	884.78	636.76	4.29	3.59	2.64	-0.47	-0.04	Covered/w/another[5548]
YOR271C		"Putative protein, predicted by computational methods to be an alpha-isopropylmalate carrier; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr15:831058-832041	831058-832041	98.5%	538.51	411.62	426.07	365.20	169.19	140.30	475.07	395.63	154.75	1.75	1.61	0.64	-1.35	-1.29	Covered/w/another[5548]
YOR272W	YTM1	"Constituent of 66S pre-ribosomal particles, required for maturation of the large ribosomal subunit"	Verified	chr15:832812-834194	832812-834194	98.7%	238.79	112.80	139.91	98.89	13.18	5.13	175.80	119.40	9.16	0.65	0.48	0.04	-3.70	0.19	Matched[5550]
YOR273C	TPO4	"Polyamine transport protein, recognizes spermine, putrescine, and spermidine; localizes to the plasma membrane; member of the major facilitator superfamily"	Verified	chr15:834451-836430	834451-836430	98.8%	273.62	149.34	274.13	270.04	763.59	794.78	211.48	272.09	779.18	0.78	1.10	3.23	1.52	1.70	Frag>80[5551,5552]
YOR274W	MOD5	"Delta 2-isopentenyl pyrophosphate:tRNA isopentenyl transferase, required for biosynthesis of the modified base isopentenyladenosine in mitochondrial and cytoplasmic tRNAs; gene is nuclear and encodes two isozymic forms"	Verified	chr15:837673-838959	837673-838959	98.5%	70.18	52.05	57.57	57.57	52.05	37.06	61.11	57.57	44.55	0.23	0.23	0.18	-0.37	-0.01	Covered[5553]
YOR275C	RIM20	Protein involved in proteolytic activation of Rim101p in response to alkaline pH; PalA/AIP1/Alix family member; interaction with the ESCRT-III subunit Snf7p suggests a relationship between pH response and multivesicular body formation	Verified	chr15:839083-841068	839083-841068	99.1%	134.61	153.91	136.14	128.52	201.16	173.22	144.26	132.33	187.19	0.53	0.54	0.78	0.50	0.88	Matched[5554]
YOR276W	CAF20	"Phosphoprotein of the mRNA cap-binding complex involved in translational control, repressor of cap-dependent translation initiation, competes with eIF4G for binding to eIF4E"	Verified	chr15:841332-841817	841332-841817	98.6%	1314.44	1051.55	1368.69	1191.34	477.79	396.42	1183.00	1280.01	437.10	4.37	5.20	1.81	-1.55	-1.65	Matched[5555]
YOR277C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; almost completely overlaps the verified gene CAF20"	Dubious	chr15:841514-841822	841514-841822	98.5%	1458.73	1186.04	1448.87	1195.89	489.53	410.68	1322.38	1322.38	450.10	4.88	5.37	1.86	-1.55	-0.35	Matched[5555]
YOR278W	HEM4	"Uroporphyrinogen III synthase, catalyzes the conversion of hydroxymethylbilane to uroporphyrinogen III, the fourth step in the heme biosynthetic pathway"	Verified	chr15:842816-843643	842816-843643	98.8%	138.08	150.30	135.63	131.97	182.07	94.09	144.19	133.80	138.08	0.53	0.54	0.57	0.05	-0.08	Covered/w/another[5557]
YOR279C	RFM1	DNA-binding protein required for vegetative repression of middle sporulation genes; specificity factor that directs the Hst1p histone deacetylase to some of the promoters regulated by Sum1p; involved in telomere maintenance	Verified	chr15:843697-844629	843697-844629	99.3%	79.86	70.14	70.14	83.09	99.28	65.83	75.00	76.62	82.55	0.28	0.31	0.34	0.11	-0.08	Covered/w/another[5557]
YOR280C	FSH3	Serine hydrolase; sequence is similar to Fsh1p and Fsh2p	Verified	chr15:844991-845791	844991-845791	99.2%	153.59	152.33	169.95	151.07	195.13	120.86	152.96	160.51	157.99	0.56	0.65	0.65	-0.02	0.25	Covered/w/another[5557]
YOR282W		Hypothetical protein; open reading frame overlaps 5' end of essential PLP2 gene	Dubious	chr15:846999-847319	846999-847319	99.3%	131.71	109.76	125.44	134.85	97.22	53.31	120.74	130.15	75.26	0.45	0.53	0.31	-0.79	-0.41	Frag<80[5559]
YOR281C	PLP2	"Essential protein with similarity to phosducins, which are G-protein regulators; lethality of null mutation is functionally complemented by expression of mouse phosducin-like protein MgcPhLP"	Verified	chr15:846268-847128	846268-847128	99.4%	331.97	278.20	319.11	291.06	220.92	122.74	305.08	305.08	171.83	1.13	1.24	0.71	-0.83	-0.73	Frag>80[5558,5559]
YOR283W		"Putative protein of unknown function with some similarity to GPM1/YKL152C, a phosphoglycerate mutase; YOR283W is not an essential gene"	Uncharacterized	chr15:847452-848144	847452-848144	98.7%	311.52	362.71	261.79	229.62	204.75	96.53	337.11	245.70	150.64	1.24	1.00	0.62	-0.71	-0.75	Matched[5560]
YOR284W	HUA2	Cytoplasmic protein of unknown function; computational analysis of large-scale protein-protein interaction data suggests a possible role in actin patch assembly	Verified	chr15:848477-849208	848477-849208	98.9%	71.85	81.52	93.96	49.74	49.74	27.64	76.69	71.85	38.69	0.28	0.29	0.16	-0.89	-0.21	Matched[5561]
YOR285W		"Protein of unknown function, localized to the mitochondrial outer membrane"	Verified	chr15:849634-850053	849634-850053	98.7%	1526.37	2071.34	1974.88	1753.04	6578.12	3954.59	1798.85	1863.96	5266.35	6.64	7.57	21.82	1.50	0.69	Matched[5562]
YOR286W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr15:850279-850728	850279-850728	98.5%	615.67	541.25	534.49	615.67	753.24	419.47	578.46	575.08	586.36	2.14	2.33	2.43	0.03	-0.21	Matched[5563]
YOR287C		Putative protein of unknown function; may play a role in the ribosome and rRNA biosynthesis based on expression profiles and mutant phenotype	Uncharacterized	chr15:850936-851838	850936-851838	99.5%	102.37	82.34	68.99	77.89	5.56	5.56	92.35	73.44	5.56	0.34	0.30	0.02	-3.72	-3.63	Matched[5564]
YOR288C	MPD1	Member of the protein disulfide isomerase (PDI) family; interacts with and inhibits the chaperone activity of Cne1p; MPD1 overexpression in a pdi1 null mutant suppresses defects in Pdi1p functions such as carboxypeptidase Y maturation	Verified	chr15:852120-853076	852120-853076	99.1%	174.04	164.54	181.42	175.09	745.72	497.85	169.29	178.25	621.78	0.62	0.72	2.58	1.80	1.98	Matched[5565]
YOR289W		Hypothetical protein	Uncharacterized	chr15:853356-854111	853356-854111	98.7%	109.88	155.44	129.98	113.90	929.98	345.73	132.66	121.94	637.86	0.49	0.49	2.64	2.39	1.40	Matched[5566]
YOR290C	SNF2	Catalytic subunit of the SWI/SNF chromatin remodeling complex involved in transcriptional regulation; contains DNA-stimulated ATPase activity; functions interdependently in transcriptional activation with Snf5p and Snf6p	Verified	chr15:855146-860257	855146-860257	99.1%	150.59	160.06	138.16	135.59	107.76	170.52	155.33	136.87	139.14	0.57	0.56	0.58	0.02	0.49	Matched[5568]
YOR291W		Putative protein of unknown function; shares sequence similarity with the type V P-type ATPase Spf1p; YOR291W is not an essential protein	Uncharacterized	chr15:861174-865592	861174-865592	98.9%	116.45	154.20	119.19	110.96	99.06	101.35	135.32	115.07	100.20	0.50	0.47	0.42	-0.20	-0.07	Frag>80[5569,5570]
YOR292C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the vacuole; YOR292C is not an essential gene	Uncharacterized	chr15:865652-866581	865652-866581	99.0%	71.72	106.49	92.36	78.24	334.68	195.59	89.10	85.30	265.13	0.33	0.35	1.10	1.64	1.47	Matched[5571]
YOR293W	RPS10A	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Bp and has similarity to rat ribosomal protein S10	Verified	chr15:867097-867851	867097-867148,867586-867851	73.6%	9817.79	8015.66	8643.42	7716.73	1883.27	1516.01	8916.73	8180.07	1699.64	32.92	33.20	7.04	-2.27	-3.00	Matched[5572]
YOR293C-A		Identified by expression profiling and mass spectrometry	Uncharacterized	chr15:867997-868146	867997-868146	99.3%	33.56	0.00	6.71	6.71	13.42	6.71	16.78	6.71	10.07	0.06	0.03	0.04	0.58	NaN	Covered/w/another[5572]
YOR294W	RRS1	Essential protein that binds ribosomal protein L11 and is required for nuclear export of the 60S pre-ribosomal subunit during ribosome biogenesis; mouse homolog shows altered expression in Huntington's disease model mice	Verified	chr15:868339-868950	868339-868950	98.3%	347.42	149.61	182.85	109.71	18.29	1.66	248.51	146.28	9.97	0.92	0.59	0.04	-3.87	-3.08	Covered/w/another[5573]
YOR295W	UAF30	"Subunit of UAF (upstream activation factor), which is an RNA polymerase I specific transcription stimulatory factor composed of Uaf30p, Rrn5p, Rrn9p, Rrn10p, histones H3 and H4; deletion decreases cellular growth rate"	Verified	chr15:869207-869893	869207-869893	98.5%	91.65	76.87	73.91	53.22	32.52	11.83	84.26	63.57	22.17	0.31	0.26	0.09	-1.52	-1.74	Covered/w/another[5573]
YOR296W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; expressed during copper starvation; YOR296W is not an essential gene	Uncharacterized	chr15:870201-874070	870201-874070	98.8%	53.62	59.11	47.34	43.94	38.45	45.25	56.36	45.64	41.85	0.21	0.19	0.17	-0.13	0.27	Covered/w/another[5573]
YOR297C	TIM18	Component of the mitochondrial Tim54p-Tim22p complex involved in insertion of polytopic proteins into the inner membrane; may function to stabilize the complex	Verified	chr15:874742-875320	874742-875320	98.9%	165.84	155.37	158.86	157.11	162.35	75.07	160.61	157.99	118.71	0.59	0.64	0.49	-0.41	-0.25	Frag>80[5574,5575,5576]
YOR298W	MUM3	Protein of unknown function involved in the organization of the outer spore wall layers; has similarity to the tafazzins superfamily of acyltransferases	Verified	chr15:875598-877037	875598-877037	99.0%	57.55	56.14	45.62	37.19	121.41	72.28	56.84	41.40	96.84	0.21	0.17	0.40	1.23	-1.19	Frag>80[5575,5576,5577,5578]
YOR298C-A	MBF1	Transcriptional coactivator that bridges the DNA-binding region of Gcn4p and TATA-binding protein Spt15p; suppressor of frameshift mutations	Verified	chr15:877229-877684	877229-877684	99.2%	2229.63	2269.40	2435.14	2576.56	15165.45	9234.51	2249.52	2505.85	12199.98	8.30	10.17	50.55	2.28	1.19	Frag>80[5578,5579]
YOR299W	BUD7	"Member of the Chs5p-Arf1p-binding proteins (ChAPs), a group of 4 related, interacting proteins (Bch1p, Fmp50p, Bud7p, Chs6p) that mediate export of specific cargo proteins, including chitin synthase Chs3p, from the Golgi to plasma membrane"	Verified	chr15:878433-880673	878433-880673	98.6%	132.56	110.39	125.78	102.70	204.95	171.93	121.48	114.24	188.44	0.45	0.46	0.78	0.72	1.02	Matched[5580]
YOR300W		"Dubious open reading frame, unlikely to encode a protein; overlaps with verified gene BUD7/YOR299W; mutation affects bipolar budding and bud site selection, though phenotype could be due to the mutation's effects on BUD7"	Dubious	chr15:880573-880881	880573-880881	99.0%	88.28	52.32	81.74	32.70	160.22	85.01	70.30	57.22	122.62	0.26	0.23	0.51	1.10	-0.19	Covered/w/another[5581]
YOR301W	RAX1	Protein involved in bud site selection during bipolar budding; localization requires Rax2p; has similarity to members of the insulin-related peptide superfamily	Verified	chr15:880963-882270	880963-882270	98.6%	122.53	122.53	117.88	95.39	104.69	59.71	122.53	106.63	82.20	0.45	0.43	0.34	-0.38	-0.19	Covered/w/another[5581]
YOR302W		"CPA1 uORF , Arginine attenuator peptide, regulates translation of the CPA1 mRNA"	Verified	chr15:882763-882840	882763-882840	99.4%	180.55	490.06	51.59	90.27	25.79	51.59	335.30	70.93	38.69	1.24	0.29	0.16	-0.87	-0.31	Covered/w/another[5581]
YOR303W	CPA1	"Small subunit of carbamoyl phosphate synthetase, which catalyzes a step in the synthesis of citrulline, an arginine precursor; translationally regulated by an attenuator peptide encoded by YOR302W within the CPA1 mRNA 5'-leader"	Verified	chr15:882897-884132	882897-884132	99.0%	252.61	483.97	138.16	111.18	93.20	53.14	368.29	124.67	73.17	1.36	0.51	0.30	-0.77	-0.37	Covered/w/another[5581]
YOR304W	ISW2	"Member of the imitation-switch (ISWI) class of ATP-dependent chromatin remodeling complexes; ATPase component that, with Itc1p, forms a complex required for repression of a-specific genes, INO1, and early meiotic genes during mitotic growth"	Verified	chr15:884512-887874	884512-887874	98.6%	152.93	142.68	123.97	102.86	90.79	91.10	147.80	113.42	90.94	0.55	0.46	0.38	-0.32	0.13	Matched[5582]
YOR304C-A		"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck"	Uncharacterized	chr15:888518-888748	888518-888748	99.3%	231.10	239.83	244.19	178.78	130.81	113.37	235.47	211.48	122.09	0.87	0.86	0.51	-0.79	-0.44	Matched[5584]
YOR305W		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the mitochondrion; deletion confers sensitivity to 4-(N-(S-glutathionylacetyl)amino) phenylarsenoxide (GSAO); YOR305W is not an essential gene	Uncharacterized	chr15:889020-889748	889020-889748	98.8%	306.71	321.98	263.69	251.20	263.69	137.40	314.35	257.45	200.54	1.16	1.05	0.83	-0.36	-0.60	Matched[5585]
YOR306C	MCH5	"Plasma membrane riboflavin transporter; facilitates the uptake of vitamin B2; required for FAD-dependent processes; sequence similarity to mammalian monocarboxylate permeases, however mutants are not deficient in monocarboxylate transport"	Verified	chr15:889865-891430	889865-891430	98.9%	165.36	230.60	126.60	91.72	60.72	47.80	197.98	109.16	54.26	0.73	0.44	0.22	-1.01	-0.34	Covered[5586]
YOR307C	SLY41	Protein involved in ER-to-Golgi transport	Verified	chr15:892728-894089	892728-894089	99.0%	221.81	234.42	192.88	216.62	210.68	221.81	228.12	204.75	216.25	0.84	0.83	0.90	0.08	0.40	Covered/w/another[5587]
YOR308C	SNU66	Component of the U4/U6.U5 snRNP complex involved in pre-mRNA splicing via spliceosome; has homology to human SART-1 and to an S. pombe protein; snu66 null mutation confers cold-sensitivity but is not lethal at normal growth temperatures	Verified	chr15:894621-896384	894621-896384	99.3%	133.01	141.00	110.75	85.63	61.65	77.64	137.01	98.19	69.64	0.51	0.40	0.29	-0.50	-0.37	Covered/w/another[5587]
YOR309C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene NOP58"	Dubious	chr15:896695-897075	896695-897075	92.0%	2675.86	1606.09	1765.84	1705.93	228.22	77.02	2140.97	1735.89	152.62	7.90	7.05	0.63	-3.51	-2.75	Matched[5588]
YOR310C	NOP58	"Protein involved in pre-rRNA processing, 18S rRNA synthesis, and snoRNA synthesis; component of the small subunit processome complex, which is required for processing of pre-18S rRNA"	Verified	chr15:896822-898357	896822-898357	97.3%	1925.89	1168.38	1266.75	1227.27	153.91	65.58	1547.14	1247.01	109.74	5.71	5.06	0.45	-3.51	-3.49	Frag>80[5588,5589]
YOR311C	HSD1	"Endoplasmic reticulum (ER)-resident membrane protein, overproduction induces enlargement of ER-like membrane structures and suppresses a temperature-sensitive sly1 mutation"	Verified	chr15:899053-899925	899053-899925	98.9%	318.43	347.37	287.16	250.11	223.48	171.37	332.90	268.64	197.42	1.23	1.09	0.82	-0.44	-0.05	Frag>80[5590,5591]
YOR312C	RPL20B	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl20Ap and has similarity to rat L18a ribosomal protein"	Verified	chr15:900247-901191	900247-900764,901191-901191	51.3%	8016.26	6162.31	6526.35	5595.62	1369.82	885.69	7089.29	6060.99	1127.76	26.17	24.60	4.67	-2.43	-3.49	Matched[5592]
YOR313C	SPS4	Protein whose expression is induced during sporulation; not required for sporulation; heterologous expression in E. coli induces the SOS response that senses DNA damage	Verified	chr15:901855-902871	901855-902871	99.4%	77.17	70.24	75.19	51.45	14.84	4.95	73.71	63.32	9.89	0.27	0.26	0.04	-2.68	-3.09	Matched[5593]
YOR314W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr15:903040-903369	903040-903369	98.8%	33.75	27.61	42.96	27.61	9.20	6.14	30.68	35.29	7.67	0.11	0.14	0.03	-2.20	0.27	Covered/w/another[5593]
YOR314W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr15:904455-904565	904455-904565	99.6%	9.05	0.00	9.05	0.00	0.00	27.14	4.52	4.52	13.57	0.02	0.02	0.06	1.58	-0.08	Matched[5594]
YOR315W	SFG1	"Nuclear protein, putative transcription factor required for growth of superficial pseudohyphae (which do not invade the agar substrate) but not for invasive pseudohyphal growth; may act together with Phd1p; potential Cdc28p substrate"	Verified	chr15:904757-905797	904757-905797	98.9%	624.52	563.33	481.75	462.32	42.74	17.48	593.93	472.04	30.11	2.19	1.92	0.12	-3.97	-3.38	Matched[5595]
YOR316C	COT1	Vacuolar transporter that mediates zinc transport into the vacuole; overexpression confers resistance to cobalt and rhodium	Verified	chr15:906233-907552	906233-907552	98.8%	180.24	167.20	219.35	155.69	282.24	253.87	173.72	187.52	268.06	0.64	0.76	1.11	0.52	0.67	Matched[5596]
YOR316C-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr15:907723-907932	907723-907932	98.0%	14.58	14.58	9.72	29.17	0.00	0.00	14.58	19.45	0.00	0.05	0.08	0.00	-Inf	NaN	Covered[5597]
YOR317W	FAA1	Long chain fatty acyl-CoA synthetase with a preference for C12:0-C16:0 fatty acids; involved in the activation of imported fatty acids; localized to both lipid particles and mitochondrial outer membrane; essential for stationary phase	Verified	chr15:909340-911442	909340-911442	98.2%	414.56	554.52	592.30	711.44	2200.66	2477.20	484.54	651.87	2338.93	1.79	2.65	9.69	1.84	1.47	Matched[5598]
YOR318C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; transcript is predicted to be spliced but there is no evidence that it is spliced in vivo"	Dubious	chr15:911781-912433	911781-912082,912430-912433	98.7%	26.48	19.86	29.78	16.55	36.40	26.48	23.17	23.17	31.44	0.09	0.09	0.13	0.44	0.06	Matched[5599]
YOR319W	HSH49	U2-snRNP associated splicing factor with similarity to the mammalian splicing factor SAP49; proposed to function as a U2-snRNP assembly factor along with Hsh155p and binding partner Cus1p; contains two RNA recognition motifs (RRM)	Verified	chr15:912819-913460	912819-913460	99.0%	138.41	144.70	133.69	72.35	135.26	67.63	141.56	103.02	101.45	0.52	0.42	0.42	-0.02	-0.13	Matched[5600]
YOR320C	GNT1	N-acetylglucosaminyltransferase capable of modification of N-linked glycans in the Golgi apparatus	Verified	chr15:913616-915091	913616-915091	99.3%	270.28	316.01	247.07	213.63	212.26	139.23	293.14	230.35	175.75	1.08	0.94	0.73	-0.39	-0.26	Matched[5601]
YOR321W	PMT3	"Protein O-mannosyltransferase, transfers mannose residues from dolichyl phosphate-D-mannose to protein serine/threonine residues; acts in a complex with Pmt5p, can instead interact with Pmt1p in some conditions; target for new antifungals"	Verified	chr15:916027-918288	916027-918288	98.8%	134.29	144.13	135.18	116.38	123.54	112.80	139.21	125.78	118.17	0.51	0.51	0.49	-0.09	0.32	Frag>80[5602,5603]
YOR322C	LDB19	Protein of unknown function involved in maintenance of proper telomere length; null mutant shows a reduced affinity for the alcian blue dye suggesting a decreased net negative charge of the cell surface	Verified	chr15:918603-921059	918603-921059	98.8%	135.51	126.04	128.51	107.92	100.91	93.09	130.78	118.21	97.00	0.48	0.48	0.40	-0.29	0.26	Matched[5604]
YOR323C	PRO2	"Gamma-glutamyl phosphate reductase, catalyzes the second step in proline biosynthesis"	Verified	chr15:921532-922902	921532-922902	99.1%	469.38	457.61	430.38	386.98	289.87	267.06	463.49	408.68	278.46	1.71	1.66	1.15	-0.55	0.03	Matched[5605]
YOR325W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified ORF FRT1"	Dubious	chr15:924574-925047	924574-925047	98.9%	76.81	93.88	61.88	70.41	44.81	32.01	85.35	66.15	38.41	0.32	0.27	0.16	-0.78	-0.18	Covered/w/another[5606]
YOR324C	FRT1	"Tail-anchored endoplasmic reticulum membrane protein that is a substrate of the phosphatase calcineurin, interacts with homolog Frt2p, promotes cell growth in conditions of high Na+, alkaline pH, and cell wall stress"	Verified	chr15:923229-925037	923229-925037	98.9%	116.81	148.67	84.95	92.78	60.92	59.24	132.74	88.86	60.08	0.49	0.36	0.25	-0.56	-0.19	Matched[5606]
YOR326W	MYO2	"One of two type V myosin motors (along with MYO4) involved in actin-based transport of cargos; required for the polarized delivery of secretory vesicles, the vacuole, late Golgi elements, peroxisomes, and the mitotic spindle"	Verified	chr15:925718-930442	925718-930442	98.8%	455.50	433.65	382.87	370.02	233.32	350.52	444.58	376.44	291.92	1.64	1.53	1.21	-0.37	0.27	Frag>80[5607,5608,5609]
YOR327C	SNC2	Vesicle membrane receptor protein (v-SNARE) involved in the fusion between Golgi-derived secretory vesicles with the plasma membrane; member of the synaptobrevin/VAMP family of R-type v-SNARE proteins	Verified	chr15:930731-931078	930731-931078	99.2%	738.86	634.55	680.91	704.09	1121.33	837.38	686.71	692.50	979.36	2.53	2.81	4.06	0.50	0.71	Matched[5610]
YOR328W	PDR10	"ATP-binding cassette (ABC) transporter, multidrug transporter involved in the pleiotropic drug resistance network; regulated by Pdr1p and Pdr3p"	Verified	chr15:931800-936494	931800-936494	98.6%	18.80	24.85	15.78	11.24	25.72	24.64	21.83	13.51	25.18	0.08	0.05	0.10	0.90	1.21	Frag<80[5611]
YOR329W-A		"Dubious open reading frame, unlikely to encode a functional protein; identified by fungal homology and RT-PCR"	Dubious	chr15:939345-939554	939345-939554	99.1%	48.07	48.07	38.45	33.65	72.10	52.87	48.07	36.05	62.49	0.18	0.15	0.26	0.79	NaN	Covered/w/another[5612]
YOR329C	SCD5	Protein required for normal cortical actin organization and endocytosis; multicopy suppressor of clathrin deficiency; acts as a targeting subunit for protein phosphatase type 1	Verified	chr15:936728-939346	936728-939346	98.8%	168.88	195.16	189.36	157.29	192.07	127.14	182.02	173.32	159.61	0.67	0.70	0.66	-0.12	0.18	Matched[5612]
YOR330C	MIP1	Catalytic subunit of the mitochondrial DNA polymerase; conserved C-terminal segment is required for the maintenance of mitochondrial genome.	Verified	chr15:939618-943382	939618-943382	99.1%	106.40	121.14	95.95	84.96	75.58	74.51	113.77	90.45	75.04	0.42	0.37	0.31	-0.27	0.17	Matched[5613]
YOR332W	VMA4	"Subunit E of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; required for the V1 domain to assemble onto the vacuolar membrane"	Verified	chr15:943653-944354	943653-944354	98.2%	2514.87	3393.76	2558.38	2435.10	2757.07	2226.25	2954.31	2496.74	2491.66	10.91	10.13	10.32	-0.00	-0.29	Matched[5614]
YOR331C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; open reading frame overlaps the verified gene VMA4/YOR332W"	Dubious	chr15:943562-944119	943562-944119	98.1%	2164.71	2824.17	2161.06	2106.26	2241.44	1945.50	2494.44	2133.66	2093.47	9.21	8.66	8.67	-0.03	0.01	Matched[5614]
YOR334W	MRS2	"Mitochondrial inner membrane Mg(2+) channel, required for maintenance of intramitochondrial Mg(2+) concentrations at the correct level to support splicing of group II introns"	Verified	chr15:944593-946005	944593-946005	99.0%	79.38	97.97	67.22	48.63	58.64	57.92	88.67	57.92	58.28	0.33	0.24	0.24	0.01	-0.13	Matched[5615]
YOR333C		"Dubious open reading frame, unlikely to encode a functional protein; overlaps 5' end of MRS2 gene required for respiratory growth"	Dubious	chr15:944538-944954	944538-944954	99.3%	74.87	60.38	67.63	45.89	24.15	62.80	67.63	56.76	43.47	0.25	0.23	0.18	-0.38	0.14	Covered/w/another[5615]
YOR335W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene ALA1/YOR335C"	Dubious	chr15:946565-946645	946565-946645	99.9%	815.23	691.71	765.83	827.59	111.17	98.82	753.47	796.71	104.99	2.78	3.23	0.44	-2.92	NaN	Covered/w/another[5616]
YOR335C	ALA1	"Cytoplasmic alanyl-tRNA synthetase, required for protein synthesis; point mutation (cdc64-1 allele) causes cell cycle arrest at G1; lethality of null mutation is functionally complemented by human homolog"	Verified	chr15:946230-949106	946230-949106	99.0%	509.55	360.75	480.42	426.03	88.08	77.20	435.15	453.22	82.64	1.61	1.84	0.34	-2.46	-2.02	Matched[5616]
YOR336W	KRE5	"Protein required for beta-1,6 glucan biosynthesis; mutations result in aberrant morphology and severe growth defects"	Verified	chr15:949770-953867	949770-953867	98.9%	98.16	97.91	76.95	77.94	58.21	62.15	98.04	77.44	60.18	0.36	0.31	0.25	-0.36	0.32	Matched[5617]
YOR337W	TEA1	Ty1 enhancer activator required for full levels of Ty enhancer-mediated transcription; C6 zinc cluster DNA-binding protein	Verified	chr15:954341-956620	954341-956620	98.7%	70.20	68.42	38.66	32.43	12.00	10.22	69.31	35.55	11.11	0.26	0.14	0.05	-1.68	-0.92	Matched[5618]
YOR338W		Putative protein of unknown function; YOR338W transcription is regulated by Azf1p and its transcript is a specific target of the G protein effector Scp160p; identified as being required for sporulation in a high-throughput mutant screen	Uncharacterized	chr15:956895-957986	956895-957986	98.5%	5.58	7.43	2.79	0.00	11.15	13.01	6.50	1.39	12.08	0.02	0.01	0.05	3.12	1.15	Frag<80[5619]
YOR339C	UBC11	"Ubiquitin-conjugating enzyme most similar in sequence to Xenopus ubiquitin-conjugating enzyme E2-C, but not a true functional homolog of this E2; unlike E2-C, not required for the degradation of mitotic cyclin Clb2"	Verified	chr15:958359-958829	958359-958829	99.2%	19.27	14.99	12.85	12.85	19.27	14.99	17.13	12.85	17.13	0.06	0.05	0.07	0.42	-0.89	
YOR340C	RPA43	RNA polymerase I subunit A43	Verified	chr15:959199-960179	959199-960179	99.2%	371.85	236.26	251.67	221.88	28.76	6.16	304.06	236.77	17.46	1.12	0.96	0.07	-3.76	-4.60	Matched[5620]
YOR341W	RPA190	RNA polymerase I subunit; largest subunit of RNA polymerase I	Verified	chr15:960984-965978	960984-965978	98.8%	360.95	197.49	227.06	183.92	25.52	15.80	279.22	205.49	20.66	1.03	0.83	0.09	-3.31	-2.32	Frag<80[5621]
YOR342C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and the nucleus	Uncharacterized	chr15:966663-967622	966663-967622	98.9%	348.50	322.18	344.29	252.69	60.01	48.43	335.34	298.49	54.22	1.24	1.21	0.22	-2.46	-1.79	Covered/w/another[5622]
YOR343C		"Dubious open reading frame, unlikely to encode a functional protein; based on available experimental and comparative sequence data"	Dubious	chr15:968145-968471	968145-968471	97.9%	24.98	81.18	31.22	15.61	15.61	12.49	53.08	23.42	14.05	0.20	0.10	0.06	-0.74	-0.37	Covered/w/another[5622]
YOR344C	TYE7	Serine-rich protein that contains a basic-helix-loop-helix (bHLH) DNA binding motif; binds E-boxes of glycolytic genes and contributes to their activation; may function as a transcriptional activator in Ty1-mediated gene expression	Verified	chr15:977191-978066	977191-978066	99.0%	715.99	977.71	532.67	578.79	470.41	457.72	846.85	555.73	464.07	3.13	2.26	1.92	-0.26	0.27	Matched[5627]
YOR346W	REV1	"Deoxycytidyl transferase, forms a complex with the subunits of DNA polymerase zeta, Rev3p and Rev7p; involved in repair of abasic sites in damaged DNA"	Verified	chr15:981825-984782	981825-984782	98.9%	198.69	148.08	139.19	117.64	93.36	64.29	173.39	128.41	78.83	0.64	0.52	0.33	-0.70	-1.52	Frag>80[5630,5631]
YOR345C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; open reading frame overlaps the verified gene REV1"	Dubious	chr15:981809-982159	981809-982159	98.8%	95.11	86.47	40.35	37.47	11.53	28.82	90.79	38.91	20.18	0.34	0.16	0.08	-0.95	-1.13	Covered/w/another[5630]
YOR347C	PYK2	"Pyruvate kinase that appears to be modulated by phosphorylation; PYK2 transcription is repressed by glucose, and Pyk2p may be active under low glycolytic flux"	Verified	chr15:984939-986459	984939-986459	98.9%	126.35	172.91	212.81	236.08	727.53	720.88	149.63	224.45	724.21	0.55	0.91	3.00	1.69	1.49	Matched[5632]
YOR348C	PUT4	"Proline permease, required for high-affinity transport of proline; also transports the toxic proline analog azetidine-2-carboxylate (AzC); PUT4 transcription is repressed in ammonia-grown cells"	Verified	chr15:986896-988779	986896-988779	98.3%	4.32	5.94	8.64	13.50	15.12	12.42	5.13	11.07	13.77	0.02	0.04	0.06	0.31	0.45	Frag<80[5633]
YOR349W	CIN1	Tubulin folding factor D involved in beta-tubulin (Tub2p) folding; isolated as mutant with increased chromosome loss and sensitivity to benomyl	Verified	chr15:989786-992830	989786-992830	99.2%	35.77	28.81	20.20	12.92	16.89	15.90	32.29	16.56	16.39	0.12	0.07	0.07	-0.01	0.15	Frag<80[5634]
YOR350C	MNE1	Mitochondrial protein similar to Lucilia illustris mitochondrial cytochrome oxidase	Verified	chr15:992861-994852	992861-994852	99.1%	54.20	66.86	48.12	60.27	77.50	49.64	60.53	54.20	63.57	0.22	0.22	0.26	0.23	0.43	Matched[5635]
YOR351C	MEK1	"Meiosis-specific serine/threonine protein kinase, functions in meiotic checkpoint, promotes recombination between homologous chromosomes by suppressing double strand break repair between sister chromatids"	Verified	chr15:995015-996508	995015-996508	99.2%	12.82	14.17	8.77	8.77	11.47	7.42	13.49	8.77	9.45	0.05	0.04	0.04	0.11	3.52	
YOR352W		"Putative protein of unknown function; expression levels regulated by Arg5,6p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus"	Uncharacterized	chr15:997210-998241	997210-998241	99.0%	110.56	114.47	138.93	143.82	246.56	183.94	112.52	141.38	215.25	0.42	0.57	0.89	0.61	0.87	Covered/w/another[5636]
YOR353C	SOG2	"Key component of the RAM signaling network, required for proper cell morphogenesis and cell separation after mitosis"	Verified	chr15:998450-1000825	998450-1000825	99.2%	97.97	89.07	81.43	77.19	86.95	74.22	93.52	79.31	80.59	0.35	0.32	0.33	0.02	0.47	Covered/w/another[5636]
YOR354C	MSC6	"Protein of unknown function; mutant is defective in directing meiotic recombination events to homologous chromatids; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr15:1001144-1003222	1001144-1003222	99.1%	211.53	207.65	228.51	236.75	163.98	126.62	209.59	232.63	145.30	0.77	0.94	0.60	-0.68	-0.11	Matched[5637]
YOR355W	GDS1	"Protein of unknown function, required for growth on glycerol as a carbon source; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr15:1005135-1006703	1005135-1006703	99.0%	527.78	446.04	485.30	281.27	129.37	120.36	486.91	383.29	124.87	1.80	1.56	0.52	-1.62	-0.89	Covered[5638]
YOR356W		Mitochondrial protein with similarity to flavoprotein-type oxidoreductases; found in a large supramolecular complex with other mitochondrial dehydrogenases	Verified	chr15:1007219-1009114	1007219-1009114	98.4%	185.96	224.00	216.50	221.86	224.00	232.58	204.98	219.18	228.29	0.76	0.89	0.95	0.06	0.43	Matched[5639]
YOR357C	SNX3	Sorting nexin required to maintain late-Golgi resident enzymes in their proper location by recycling molecules from the prevacuolar compartment; contains a PX domain and sequence similarity to human Snx3p	Verified	chr15:1009222-1009710	1009222-1009710	99.1%	245.47	319.72	270.22	208.34	746.71	426.99	282.60	239.28	586.85	1.04	0.97	2.43	1.29	0.59	Covered/w/another[5639]
YOR358W	HAP5	"Subunit of the heme-activated, glucose-repressed Hap2/3/4/5 CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression; required for assembly and DNA binding activity of the complex"	Verified	chr15:1010159-1010887	1010159-1010887	97.9%	89.69	114.92	116.32	106.51	210.22	134.54	102.31	111.42	172.38	0.38	0.45	0.71	0.63	0.72	Matched[5640]
YOR359W	VTS1	"Post-transcriptional gene regulator, RNA-binding protein containing a SAM domain; shows genetic interactions with Vti1p, which is a v-SNARE involved in cis-Golgi membrane traffic"	Verified	chr15:1011187-1012758	1011187-1012758	99.0%	138.22	135.00	95.15	66.22	14.14	5.79	136.61	80.68	9.96	0.50	0.33	0.04	-3.02	-2.67	Matched[5641]
YOR360C	PDE2	"High-affinity cyclic AMP phosphodiesterase, component of the cAMP-dependent protein kinase signaling system, protects the cell from extracellular cAMP, contains readthrough motif surrounding termination codon"	Verified	chr15:1013239-1014819	1013239-1014819	99.2%	161.95	200.84	161.95	163.23	221.89	156.85	181.40	162.59	189.37	0.67	0.66	0.78	0.22	0.53	Matched[5642]
YOR361C	PRT1	"Subunit of the core complex of translation initiation factor 3(eIF3), essential for translation; part of a subcomplex (Prt1p-Rpg1p-Nip1p) that stimulates binding of mRNA and tRNA(i)Met to ribosomes"	Verified	chr15:1015359-1017650	1015359-1017650	99.0%	740.08	515.28	653.25	613.58	163.97	124.74	627.68	633.41	144.36	2.32	2.57	0.60	-2.13	-1.59	Frag>80[5643,5644]
YOR362C	PRE10	20S proteasome alpha-type subunit	Verified	chr15:1017878-1018744	1017878-1018744	99.0%	864.72	779.64	950.96	897.35	1640.87	970.77	822.18	924.15	1305.82	3.04	3.75	5.41	0.50	0.30	Matched[5645]
YOR363C	PIP2	"Autoregulatory oleate-specific transcriptional activator of peroxisome proliferation, contains Zn(2)-Cys(6) cluster domain, forms heterodimer with Oaf1p, binds oleate response elements (OREs), activates beta-oxidation genes"	Verified	chr15:1020220-1023210	1020220-1023210	99.0%	57.06	77.32	49.29	50.31	55.37	67.19	67.19	49.80	61.28	0.25	0.20	0.25	0.30	0.87	Matched[5647]
YOR364W		Hypothetical protein	Dubious	chr15:1023369-1023737	1023369-1023737	99.1%	19.15	5.47	21.89	19.15	38.30	21.89	12.31	20.52	30.10	0.05	0.08	0.12	0.55	0.04	Overlap[5648]
YOR366W		Hypothetical protein	Dubious	chr15:1025254-1025607	1025254-1025607	98.5%	20.08	43.04	8.61	11.48	17.21	25.82	31.56	10.04	21.52	0.12	0.04	0.09	1.10	0.73	
YOR365C		Putative protein of unknown function; YOR365C is not an essential protein	Uncharacterized	chr15:1023459-1025570	1023459-1025570	99.0%	28.21	28.21	17.22	10.52	38.73	33.95	28.21	13.87	36.34	0.10	0.06	0.15	1.39	0.55	Frag<80[5648]
YOR367W	SCP1	"Component of yeast cortical actin cytoskeleton, binds and cross links actin filaments; originally identified by its homology to calponin (contains a calponin-like repeat) but the Scp1p domain structure is more similar to transgelin"	Verified	chr15:1026005-1026607	1026005-1026607	98.8%	216.59	196.45	224.99	248.50	523.86	374.42	206.52	236.74	449.14	0.76	0.96	1.86	0.92	0.74	Matched[5649]
YOR368W	RAD17	"Checkpoint protein, involved in the activation of the DNA damage and meiotic pachytene checkpoints; with Mec3p and Ddc1p, forms a clamp that is loaded onto partial duplex DNA; homolog of human and S. pombe Rad1 and U. maydis Rec1 proteins"	Verified	chr15:1026841-1028046	1026841-1028046	98.7%	111.69	111.69	100.77	78.94	82.30	41.15	111.69	89.86	61.72	0.41	0.36	0.26	-0.54	-0.90	Matched[5650]
YOR369C	RPS12	Protein component of the small (40S) ribosomal subunit; has similarity to rat ribosomal protein S12	Verified	chr15:1028192-1028623	1028192-1028623	99.5%	20331.69	16309.57	18206.58	15553.10	6836.19	5497.82	18320.63	16879.84	6167.01	67.63	68.52	25.55	-1.45	-2.81	Matched[5651]
YOR370C	MRS6	"Rab escort protein, forms a complex with the Ras-like small GTPase Ypt1p that is required for the prenylation of Ypt1p by protein geranylgeranyltransferase type II (Bet2p-Bet4p)"	Verified	chr15:1029181-1030992	1029181-1030992	99.0%	522.82	480.46	469.87	430.29	245.24	213.47	501.64	450.08	229.36	1.85	1.83	0.95	-0.97	-0.67	Frag>80[5652,5653]
YOR371C	GPB1	"Proposed beta subunit of the heterotrimeric G protein; interacts with the receptor Grp1p, affects signaling by altering the level of phosphorylation of PKS substrates; regulates pseudohyphal growth through cAMP levels; homolog of Gpb2p"	Verified	chr15:1031487-1034180	1031487-1034180	99.0%	86.25	91.12	81.37	74.25	50.62	91.12	88.68	77.81	70.87	0.33	0.32	0.29	-0.13	0.62	Matched[5654]
YOR372C	NDD1	Transcriptional activator essential for nuclear division; localized to the nucleus; essential component of the mechanism that activates the expression of a set of late-S-phase-specific genes	Verified	chr15:1034805-1036469	1034805-1036469	97.7%	166.52	174.51	154.84	128.42	165.29	148.08	170.51	141.63	156.69	0.63	0.57	0.65	0.15	0.76	Matched[5656]
YOR373W	NUD1	"Component of the spindle pole body outer plaque, required for exit from mitosis"	Verified	chr15:1036832-1039387	1036832-1039387	97.6%	98.61	95.41	80.57	58.93	65.74	42.09	97.01	69.75	53.92	0.36	0.28	0.22	-0.37	-0.12	Frag>80[5657,5658]
YOR374W	ALD4	"Mitochondrial aldehyde dehydrogenase, required for growth on ethanol and conversion of acetaldehyde to acetate; phosphorylated; activity is K+ dependent; utilizes NADP+ or NAD+ equally as coenzymes; expression is glucose repressed"	Verified	chr15:1039838-1041397	1039838-1041397	98.5%	263.54	521.22	1153.05	1229.83	7053.01	4986.36	392.38	1191.44	6019.68	1.45	4.84	24.94	2.34	1.74	Matched[5659]
YOR375C	GDH1	"NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh3p; expression regulated by nitrogen and carbon sources"	Verified	chr15:1041676-1043040	1041676-1043040	97.9%	3893.04	2467.46	4074.79	3889.30	1758.41	1779.36	3180.25	3982.05	1768.89	11.74	16.16	7.33	-1.17	-0.38	Frag>80[5660,5661,5662]
YOR376W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; YOR376W is not an essential gene."	Dubious	chr15:1043189-1043557	1043189-1043557	98.6%	0.00	8.25	5.50	5.50	13.75	5.50	4.12	5.50	9.62	0.02	0.02	0.04	0.81	-0.31	Frag<80[5662]
YOR376W-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr15:1045194-1045349	1045194-1045349	98.7%	38.97	90.93	38.97	32.48	207.85	188.36	64.95	35.72	198.11	0.24	0.15	0.82	2.47	NaN	Covered/w/another[5663]
YOR377W	ATF1	Alcohol acetyltransferase with potential roles in lipid and sterol metabolism; responsible for the major part of volatile acetate ester production during fermentation	Verified	chr15:1046224-1047801	1046224-1047801	98.9%	114.10	148.71	114.10	97.43	172.43	130.76	131.40	105.76	151.59	0.49	0.43	0.63	0.52	0.95	Covered/w/another[5663]
YOR378W		Putative protein of unknown function; belongs to the DHA2 family of drug:H+ antiporters; YOR378W is not an essential gene	Uncharacterized	chr15:1049509-1051056	1049509-1051056	98.8%	20.28	28.78	11.12	19.62	22.89	29.43	24.53	15.37	26.16	0.09	0.06	0.11	0.77	1.64	Covered/w/another[5664]
YOR379C		Hypothetical protein	Dubious	chr15:1050724-1051062	1050724-1051062	98.6%	11.96	26.91	5.98	11.96	26.91	14.95	19.44	8.97	20.93	0.07	0.04	0.09	1.22	0.89	Covered/w/another[5664]
YOR380W	RDR1	Transcriptional repressor involved in the control of multidrug resistance; negatively regulates expression of the PDR5 gene; member of the Gal4p family of zinc cluster proteins	Verified	chr15:1051288-1052928	1051288-1052928	98.7%	63.56	61.71	61.10	33.94	83.31	62.95	62.64	47.52	73.13	0.23	0.19	0.30	0.62	0.44	Covered/w/another[5664]
YOR381W	FRE3	"Ferric reductase, reduces siderophore-bound iron prior to uptake by transporters; expression induced by low iron levels"	Verified	chr15:1055543-1057678	1055543-1057678	96.4%	39.33	50.01	45.64	35.44	71.37	51.95	44.67	40.54	61.66	0.16	0.16	0.26	0.60	1.02	Covered[5665]
YOR381W-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr15:1058421-1058588	1058421-1058588	98.7%	6.03	12.06	6.03	0.00	6.03	6.03	9.04	3.01	6.03	0.03	0.01	0.02	1.00	NaN	Overlap[5665]
YOR382W	FIT2	"Mannoprotein that is incorporated into the cell wall via a glycosylphosphatidylinositol (GPI) anchor, involved in the retention of siderophore-iron in the cell wall"	Verified	chr15:1059529-1059990	1059529-1059990	98.6%	116.39	278.89	147.13	105.41	1743.62	1297.83	197.64	126.27	1520.72	0.73	0.51	6.30	3.59	2.62	Matched[5666]
YOR383C	FIT3	"Mannoprotein that is incorporated into the cell wall via a glycosylphosphatidylinositol (GPI) anchor, involved in the retention of siderophore-iron in the cell wall"	Verified	chr15:1060439-1061053	1060439-1061053	86.4%	291.54	631.97	349.84	216.30	1085.27	878.37	461.76	283.07	981.82	1.70	1.15	4.07	1.79	1.92	Frag>80[5667,5668]
YOR384W	FRE5	"Putative ferric reductase with similarity to Fre2p; expression induced by low iron levels; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr15:1061562-1063646	1061562-1063646	98.5%	69.62	75.46	61.83	64.27	59.40	79.85	72.54	63.05	69.62	0.27	0.26	0.29	0.14	1.43	Covered/w/another[5669]
YOR385W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YOR385W is not an essential gene	Uncharacterized	chr15:1065041-1065913	1065041-1065913	98.9%	86.84	79.89	75.26	64.84	132.00	94.94	83.37	70.05	113.47	0.31	0.28	0.47	0.70	0.75	Covered/w/another[5669]
YOR386W	PHR1	"DNA photolyase involved in photoreactivation, repairs pyrimidine dimers in the presence of visible light; induced by DNA damage; regulated by transcriptional repressor Rph1p"	Verified	chr15:1066837-1068534	1066837-1068534	98.9%	65.52	105.43	90.53	103.64	285.30	316.28	85.47	97.09	300.79	0.32	0.39	1.25	1.63	1.72	Matched[5670]
YOR387C		Putative protein of unknown function; regulated by the metal-responsive Aft1p transcription factor; highly inducible in zinc-depleted conditions; localizes to the soluble fraction	Uncharacterized	chr15:1069619-1070239	1069619-1070239	61.9%	54.63	85.84	54.63	36.42	192.50	88.45	70.24	45.52	140.47	0.26	0.18	0.58	1.63	0.54	Covered[5671]
YOR388C	FDH1	"NAD(+)-dependent formate dehydrogenase, may protect cells from exogenous formate"	Verified	chr15:1071791-1072921	1071791-1072921	3.6%	0.00	0.00	0.00	0.00	24.51	24.51	0.00	0.00	24.51	0.00	0.00	0.10	Inf	0.75	
YOR389W		Putative protein of unknown function; expression regulated by copper levels	Uncharacterized	chr15:1074211-1076085	1074211-1076085	23.5%	29.52	52.23	11.36	9.08	20.44	27.25	40.88	10.22	23.85	0.15	0.04	0.10	1.22	0.92	Overlap[5673]
YOR390W		Putative protein of unknown function	Uncharacterized	chr15:1076782-1077909	1076782-1077909	6.7%	66.26	53.01	185.53	79.51	13.25	39.76	59.64	132.52	26.50	0.22	0.54	0.11	-2.32	-0.31	Frag<80[5674]
YOR391C	HSP33	"Possible chaperone and cysteine protease with similarity to E. coli Hsp31 and S. cerevisiae Hsp31p, Hsp32p, and Sno4p; member of the DJ-1/ThiJ/PfpI superfamily, which includes human DJ-1 involved in Parkinson's disease"	Verified	chr15:1078543-1079256	1078543-1079256	4.0%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	2.62	
YOR392W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; gene expression induced by heat"	Dubious	chr15:1079280-1079723	1079280-1079723	18.9%	0.00	0.00	0.00	0.00	0.00	11.92	0.00	0.00	5.96	0.00	0.00	0.02	Inf	1.66	
YOR393W	ERR1	"Protein of unknown function, has similarity to enolases"	Verified	chr15:1080274-1081587	1080274-1081587	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.00	
YOR394W		Hypothetical protein	Uncharacterized	chr15:1082716-1083210	1082716-1083210	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.84	
YOR394C-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr15:1084200-1084367	1084200-1084367	2.0%	0.00	0.00	0.00	0.00	0.00	300.00	0.00	0.00	150.00	0.00	0.00	0.62	Inf	NaN	
YOR396W	YRF1-8	"One of several telomeric Y' element-encoded DNA helicases, known as Y'-Help1 (Y'-HELicase Protein 1)"	Uncharacterized	chr15:1085471-1090861	1085471-1090861	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.30	
YOR396C-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr15:1090013-1090495	1090013-1090495	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YPL283W-B		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr16:643-1125	643-1125	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YPL283W-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr16:1426-2001	1426-2001	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
YPL283C	YRF1-7	"Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p"	Verified	chr16:280-6007	280-5840,5989-6007	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.18	
YPL282C		Hypothetical protein	Uncharacterized	chr16:7933-8427	7933-8427	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.85	
YPL281C	ERR2	"Protein of unknown function, has similarity to enolases"	Verified	chr16:9557-10870	9557-10870	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.87	
YPL280W	HSP32	"Possible chaperone and cysteine protease with similarity to E. coli Hsp31 and S. cerevisiae Hsp31p, Hsp33p, and Sno4p; member of the DJ-1/ThiJ/PfpI superfamily, which includes human DJ-1 involved in Parkinson's disease"	Uncharacterized	chr16:11887-12600	11887-12600	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.47	
YPL279C		Putative protein of unknown function	Uncharacterized	chr16:13228-14355	13228-14355	5.5%	31.96	79.89	143.81	15.98	15.98	47.94	55.93	79.89	31.96	0.21	0.32	0.13	-1.32	-0.32	Frag<80[5675,5676,5677]
YPL278C		Putative protein of unknown function; gene expression regulated by copper levels	Uncharacterized	chr16:15053-15355	15053-15355	1.4%	0.00	233.01	0.00	233.01	466.02	466.02	116.50	116.50	466.02	0.43	0.47	1.93	2.00	1.33	Frag<80[5677,5678]
YPL277C		Putative protein of unknown function; localized to the membranes; gene expression regulated by copper levels	Uncharacterized	chr16:15405-16868	15405-16868	25.4%	45.69	29.57	26.88	24.19	48.38	59.13	37.63	25.53	53.76	0.14	0.10	0.22	1.07	1.21	Frag<80[5677,5678]
YPL274W	SAM3	"High-affinity S-adenosylmethionine permease, required for utilization of S-adenosylmethionine as a sulfur source; has similarity to S-methylmethionine permease Mmp1p"	Verified	chr16:22938-24701	22938-24701	98.8%	142.80	258.65	147.39	108.97	69.97	55.06	200.73	128.18	62.51	0.74	0.52	0.26	-1.04	-0.36	Frag>80[5680,5681]
YPL273W	SAM4	"S-adenosylmethionine-homocysteine methyltransferase, functions along with Mht1p in the conversion of S-adenosylmethionine (AdoMet) to methionine to control the methionine/AdoMet ratio"	Verified	chr16:25087-26064	25087-26064	69.8%	918.06	796.53	726.25	790.68	184.49	165.46	857.30	758.47	174.97	3.16	3.08	0.72	-2.12	-1.88	Frag>80[5681,5682,5683]
YPL272C		Putative protein of unknown function; gene expression induced in response to ketoconazole; YPL272C is not an essential gene	Uncharacterized	chr16:26611-28164	26611-28164	99.1%	36.35	45.44	22.72	20.12	21.42	9.74	40.90	21.42	15.58	0.15	0.09	0.06	-0.46	-0.63	
YPL271W	ATP15	"Epsilon subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis; phosphorylated"	Verified	chr16:30079-30267	30079-30267	99.2%	938.46	1023.77	1114.42	1098.42	1866.25	1221.06	981.12	1106.42	1543.66	3.62	4.49	6.40	0.48	-0.39	Matched[5684]
YPL270W	MDL2	Mitochondrial inner membrane half-type ATP-binding cassette (ABC) transporter	Verified	chr16:30482-32803	30482-32803	98.8%	145.96	171.23	162.52	156.42	181.25	159.90	158.59	159.47	170.58	0.59	0.65	0.71	0.10	0.52	Matched[5685]
YPL269W	KAR9	"Karyogamy protein required for correct positioning of the mitotic spindle and for orienting cytoplasmic microtubules, localizes at the shmoo tip in mating cells and at the tip of the growing bud in small-budded cells through anaphase"	Verified	chr16:33013-34947	33013-34947	98.8%	79.49	106.69	67.46	64.32	56.48	41.84	93.09	65.89	49.16	0.34	0.27	0.20	-0.42	0.17	Matched[5686]
YPL268W	PLC1	"Phosphoinositide-specific phospholipase C, hydrolyzes phosphatidylinositol 4,5-biphosphate (PIP2) to generate inositol 1,4,5-triphosphate (IP3) and 1,2-diacylglycerol (DAG); involved in kinetochore function and pseudohyphal differentiation"	Verified	chr16:35236-37845	35236-37845	98.7%	109.05	133.88	92.36	81.49	74.90	55.88	121.46	86.93	65.39	0.45	0.35	0.27	-0.41	0.00	Matched[5687]
YPL267W	ACM1	Cell cycle regulated protein of unknown function; associated with Cdh1p and may supress the APC/C[Cdh1]-mediated proteolysis of mitotic cyclins	Verified	chr16:38169-38798	38169-38798	98.6%	175.49	120.75	149.73	99.82	66.01	35.42	148.12	124.77	50.71	0.55	0.51	0.21	-1.30	-1.40	Frag>80[5688,5689]
YPL266W	DIM1	"Essential 18S rRNA dimethylase (dimethyladenosine transferase), responsible for conserved m6(2)Am6(2)A dimethylation in 3'-terminal loop of 18S rRNA, part of 90S and 40S pre-particles in nucleolus, involved in pre-ribosomal RNA processing"	Verified	chr16:39121-40077	39121-40077	98.6%	330.70	160.05	261.80	187.61	29.68	6.36	245.37	224.71	18.02	0.91	0.91	0.07	-3.64	-3.54	Matched[5690]
YPL265W	DIP5	"Dicarboxylic amino acid permease, mediates high-affinity and high-capacity transport of L-glutamate and L-aspartate; also a transporter for Gln, Asn, Ser, Ala, and Gly"	Verified	chr16:41043-42869	41043-42869	99.0%	311.18	665.47	464.28	380.82	665.47	453.23	488.32	422.55	559.35	1.80	1.72	2.32	0.40	0.89	Matched[5692]
YPL264C		Putative membrane protein of unknown function; physically interacts with Hsp82p; YPL264C is not an essential gene	Uncharacterized	chr16:43283-44344	43283-44344	98.8%	36.22	64.81	33.36	27.64	80.06	74.34	50.52	30.50	77.20	0.19	0.12	0.32	1.34	1.44	Matched[5693]
YPL263C	KEL3	Cytoplasmic protein of unknown function	Verified	chr16:44551-46506	44551-46506	99.2%	285.57	214.95	217.53	214.44	76.29	76.29	250.26	215.98	76.29	0.92	0.88	0.32	-1.50	-0.83	Matched[5694]
YPL262W	FUM1	"Fumarase, converts fumaric acid to L-malic acid in the TCA cycle; cytosolic and mitochondrial localization determined by the N-terminal mitochondrial targeting sequence and protein conformation; phosphorylated in mitochondria"	Verified	chr16:47336-48802	47336-48802	98.8%	494.11	514.81	452.70	505.15	601.76	581.75	504.46	478.92	591.75	1.86	1.94	2.45	0.31	0.86	Matched[5696]
YPL260W		Putative substrate of cAMP-dependent protein kinase (PKA); green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YPL260W is not an essential gene	Uncharacterized	chr16:49303-50958	49303-50958	98.7%	346.75	339.41	361.43	345.53	625.62	522.27	343.08	353.48	573.95	1.27	1.43	2.38	0.70	0.81	Matched[5697]
YPL261C		Dubious open reading frame unlikely to encode a protein; partially overlaps the uncharacterized ORF YPL260W	Dubious	chr16:48996-49304	48996-49304	98.8%	68.80	65.52	78.62	91.73	81.90	127.76	67.16	85.18	104.83	0.25	0.35	0.43	0.30	-0.02	
YPL259C	APM1	Mu1-like medium subunit of the clathrin-associated protein complex (AP-1); binds clathrin; involved in clathrin-dependent Golgi protein sorting	Verified	chr16:51244-52671	51244-52671	99.2%	152.45	160.22	158.10	148.22	148.22	114.34	156.33	153.16	131.28	0.58	0.62	0.54	-0.22	0.41	Matched[5698]
YPL258C	THI21	"Hydroxymethylpyrimidine phosphate kinase, involved in the last steps in thiamine biosynthesis; member of a gene family with THI20 and THI22; functionally redundant with Thi20p"	Verified	chr16:53498-55153	53498-55153	97.2%	49.69	66.46	36.03	22.36	19.88	17.39	58.08	29.19	18.63	0.21	0.12	0.08	-0.65	-0.76	Covered[5699]
YPL257W		Putative protein of unknown function;; homozygous diploid deletion strain exhibits low budding index; physically interacts with Hsp82p; YPL257W is not an essential gene	Uncharacterized	chr16:63279-63860	63279-63860	99.0%	29.49	50.31	34.70	26.02	76.34	34.70	39.90	30.36	55.52	0.15	0.12	0.23	0.87	0.85	Covered[5700]
YPL256C	CLN2	"G1 cyclin involved in regulation of the cell cycle; activates Cdc28p kinase to promote the G1 to S phase transition; late G1 specific expression depends on transcription factor complexes, MBF (Swi6p-Mbp1p) and SBF (Swi6p-Swi4p)"	Verified	chr16:64977-66614	64977-66614	98.9%	476.56	350.63	328.40	232.72	48.15	17.90	413.59	280.56	33.03	1.53	1.14	0.14	-3.09	-2.50	Matched[5701]
YPL255W	BBP1	"Protein required for the spindle pole body (SPB) duplication, localized at the central plaque periphery; forms a complex with a nuclear envelope protein Mps2p and SPB components Spc29p and Kar1p; required for mitotic functions of Cdc5p"	Verified	chr16:67725-68882	67725-68882	98.5%	112.24	94.70	125.39	92.95	57.87	26.31	103.47	109.17	42.09	0.38	0.44	0.17	-1.38	-0.48	Matched[5702]
YPL254W	HFI1	"Adaptor protein required for structural integrity of the SAGA complex, a histone acetyltransferase-coactivator complex that is involved in global regulation of gene expression through acetylation and transcription functions"	Verified	chr16:69485-70951	69485-70951	98.7%	118.78	116.71	125.69	102.21	93.92	75.96	117.75	113.95	84.94	0.43	0.46	0.35	-0.42	-0.08	Covered/w/another[5703]
YPL253C	VIK1	"Protein that forms a complex with Kar3p at the spindle pole body, possible regulator of Kar3p function in microtubule-mediated processes; required for sister chromatid cohesion; has similarity to Cik1p"	Verified	chr16:71063-73006	71063-73006	99.2%	86.07	77.78	79.85	54.96	60.15	44.07	81.92	67.41	52.11	0.30	0.27	0.22	-0.37	0.05	Covered/w/another[5703]
YPL251W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps 5' end of the verified, essential gene YAH1/YPL252C"	Dubious	chr16:73625-73927	73625-73927	98.3%	312.34	335.85	295.55	251.89	134.34	50.38	324.10	273.72	92.36	1.20	1.11	0.38	-1.57	-0.44	Matched[5704]
YPL252C	YAH1	Ferredoxin of the mitochondrial matrix required for formation of cellular iron-sulfur proteins; involved in heme A biosynthesis; homologous to human adrenodoxin	Verified	chr16:73363-73881	73363-73881	98.2%	366.91	347.29	362.98	288.42	131.46	45.13	357.10	325.70	88.29	1.32	1.32	0.37	-1.88	-1.63	Matched[5704]
YPL250C	ICY2	Protein of unknown function; mobilized into polysomes upon a shift from a fermentable to nonfermentable carbon source; potential Cdc28p substrate	Verified	chr16:74309-74719	74309-74719	98.4%	86.53	215.08	61.80	42.03	889.99	1075.40	150.80	51.92	982.69	0.56	0.21	4.07	4.24	3.77	Matched[5705]
YPL250W-A		Identified by fungal homology and RT-PCR	Dubious	chr16:75702-75989	75702-75989	73.5%	10016.53	8358.91	9157.02	7631.64	2984.65	3178.28	9187.72	8394.33	3081.46	33.92	34.07	12.77	-1.45	NaN	Matched[5707]
YPL249C-A	RPL36B	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl36Ap and has similarity to rat L36 ribosomal protein; binds to 5.8 S rRNA"	Verified	chr16:75699-76239	75699-75985,76224-76239	74.8%	9481.81	7925.03	8657.11	7223.81	2835.72	2994.49	8703.42	7940.46	2915.10	32.13	32.23	12.08	-1.45	-2.53	Frag>80[5706,5707,5708]
YPL249C	GYP5	"GTPase-activating protein (GAP) for yeast Rab family members, involved in ER to Golgi trafficking; exhibits GAP activity toward Ypt1p that is stimulated by Gyl1p, also acts on Sec4p; interacts with Gyl1p, Rvs161p and Rvs167p"	Verified	chr16:76669-79353	76669-79353	99.2%	94.57	90.44	88.94	80.68	114.46	132.47	92.50	84.81	123.46	0.34	0.34	0.51	0.54	1.15	Matched[5709]
YPL248C	GAL4	DNA-binding transcription factor required for the activation of the GAL genes in response to galactose; repressed by Gal80p and activated by Gal3p	Verified	chr16:79711-82356	79711-82356	98.8%	43.98	45.13	36.71	30.98	39.77	21.03	44.55	33.84	30.40	0.16	0.14	0.13	-0.15	-0.62	Matched[5710]
YPL247C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; similar to the petunia WD repeat protein an11; YPL247C is not an essential gene	Uncharacterized	chr16:82625-84196	82625-84196	98.7%	84.40	120.48	124.99	119.19	907.14	875.57	102.44	122.09	891.36	0.38	0.50	3.69	2.87	2.79	Frag>80[5711,5712]
YPL246C	RBD2	"Possible rhomboid protease, has similarity to eukaryotic rhomboid proteases including Pcp1p"	Verified	chr16:84509-85297	84509-85297	98.6%	604.21	641.49	663.35	556.64	290.54	210.83	622.85	610.00	250.68	2.30	2.48	1.04	-1.28	-1.01	Matched[5713]
YPL245W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the nucleus and the cytoplasm	Uncharacterized	chr16:85586-86950	85586-86950	98.6%	213.22	144.87	149.33	105.50	76.52	52.75	179.05	127.41	64.64	0.66	0.52	0.27	-0.98	-1.19	Matched[5714]
YPL244C	HUT1	"Protein with a role in UDP-galactose transport to the Golgi lumen, has similarity to human UDP-galactose transporter UGTrel1, exhibits a genetic interaction with S. cerevisiae ERO1"	Verified	chr16:87014-88033	87014-88033	99.1%	245.28	228.47	234.40	216.60	144.40	106.82	236.87	225.50	125.61	0.87	0.92	0.52	-0.84	-0.97	Matched[5715]
YPL243W	SRP68	Core component of the signal recognition particle (SRP) ribonucleoprotein (RNP) complex that functions in targeting nascent secretory proteins to the endoplasmic reticulum (ER) membrane	Verified	chr16:88517-90316	88517-90316	98.8%	386.30	317.14	327.26	336.82	237.85	125.95	351.72	332.04	181.90	1.30	1.35	0.75	-0.87	-0.96	Matched[5716]
YPL242C	IQG1	"Essential protein required for determination of budding pattern, promotes localization of axial markers Bud4p and Cdc12p and functionally interacts with Sec3p, localizes to the contractile ring during anaphase, member of the IQGAP family"	Verified	chr16:90622-95109	90622-95109	99.2%	107.80	103.99	90.96	82.65	75.69	60.41	105.89	86.80	68.05	0.39	0.35	0.28	-0.35	0.19	Matched[5717]
YPL241C	CIN2	Tubulin folding factor C (putative) involved in beta-tubulin (Tub2p) folding; isolated as mutant with increased chromosome loss and sensitivity to benomyl	Verified	chr16:95372-96258	95372-96153,96234-96258	99.1%	127.49	157.49	136.24	122.49	43.75	28.75	142.49	129.37	36.25	0.53	0.53	0.15	-1.84	-1.37	Matched[5718]
YPL240C	HSP82	"Cytoplasmic chaperone (Hsp90 family) required for pheromone signaling and negative regulation of Hsf1p; docks with the mitochondrial import receptor Tom70p for preprotein delivery; interacts with co-chaperones Cns1p, Cpr6p, Cpr7p, and Sti1p"	Verified	chr16:96496-98625	96496-98625	61.5%	569.45	842.72	620.59	805.32	24226.71	19661.21	706.08	712.95	21943.96	2.61	2.89	90.92	4.94	3.89	Matched[5719]
YPL239W	YAR1	"Cytoplasmic ankyrin-repeat containing protein of unknown function, proposed to link the processes of 40S ribosomal subunit biogenesis and adaptation to osmotic and oxidative stress; expression repressed by heat shock"	Verified	chr16:99484-100086	99484-100086	98.2%	459.30	270.18	275.24	243.16	1732.50	1053.68	364.74	259.20	1393.09	1.35	1.05	5.77	2.43	1.99	Matched[5721]
YPL237W	SUI3	"Beta subunit of the translation initiation factor eIF2, involved in the identification of the start codon; proposed to be involved in mRNA binding"	Verified	chr16:100496-101353	100496-101353	98.4%	2108.59	1614.61	1741.36	1648.96	709.58	461.99	1861.60	1695.16	585.78	6.87	6.88	2.43	-1.53	-1.54	Frag>80[5722,5723]
YPL238C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps 5' end of the verified essential gene SUI3/YPL237W"	Dubious	chr16:100474-100863	100474-100863	97.9%	1877.58	1542.39	1576.43	1482.16	665.14	395.42	1709.98	1529.30	530.28	6.31	6.21	2.20	-1.53	-0.04	Frag>80[5722,5723]
YPL236C		Putative protein kinase that exhibits Akr1p-dependent palmitoylation	Uncharacterized	chr16:101608-102702	101608-102702	99.0%	81.16	92.23	81.16	75.63	126.35	90.38	86.69	78.39	108.37	0.32	0.32	0.45	0.47	0.52	Matched[5724]
YPL235W	RVB2	Essential protein involved in transcription regulation; component of chromatin remodeling complexes; required for assembly and function of the INO80 complex; member of the RUVB-like protein family	Verified	chr16:103232-104647	103232-104647	98.6%	373.97	300.18	332.42	361.79	246.45	262.93	337.07	347.10	254.69	1.24	1.41	1.06	-0.45	-0.02	Frag>80[5725,5726]
YPL234C	TFP3	"Vacuolar ATPase V0 domain subunit c', involved in proton transport activity; hydrophobic integral membrane protein (proteolipid) containing four transmembrane segments; N and C termini are in the vacuolar lumen"	Verified	chr16:104946-105440	104946-105440	98.8%	2683.03	2824.13	2255.62	2319.02	2128.83	1588.96	2753.58	2287.32	1858.90	10.16	9.28	7.70	-0.30	-0.34	Matched[5727]
YPL233W	NSL1	Essential component of the MIND kinetochore complex (Mtw1p Including Nnf1p-Nsl1p-Dsn1p) which joins kinetochore subunits contacting DNA to those contacting microtubules; required for accurate chromosome segregation	Verified	chr16:106172-106822	106172-106822	98.3%	78.17	89.11	57.84	59.41	48.46	42.21	83.64	58.62	45.34	0.31	0.24	0.19	-0.37	-0.13	Matched[5728]
YPL232W	SSO1	Plasma membrane t-SNARE involved in fusion of secretory vesicles at the plasma membrane and in vesicle fusion during sporulation; forms a complex with Sec9p that binds v-SNARE Snc2p; syntaxin homolog; functionally redundant with Sso2p	Verified	chr16:107275-108147	107275-108147	98.3%	409.11	413.77	452.24	338.01	486.04	392.79	411.44	395.12	439.42	1.52	1.60	1.82	0.15	0.57	Matched[5729]
YPL231W	FAS2	"Alpha subunit of fatty acid synthetase, which catalyzes the synthesis of long-chain saturated fatty acids; contains beta-ketoacyl reductase and beta-ketoacyl synthase activities; phosphorylated"	Verified	chr16:108652-114315	108652-114315	98.7%	775.60	1246.22	695.47	716.22	191.93	308.20	1010.91	705.84	250.07	3.73	2.87	1.04	-1.50	-0.31	Frag>80[5730,5731]
YPL230W		Putative protein of unknown function	Uncharacterized	chr16:115218-116487	115218-115219,115294-116487	99.0%	48.99	128.39	79.40	72.64	1049.06	576.05	88.69	76.02	812.56	0.33	0.31	3.37	3.42	2.50	Matched[5732]
YPL229W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YPL229W is not an essential gene	Uncharacterized	chr16:117067-117687	117067-117687	98.4%	68.75	72.03	75.30	73.66	80.21	68.75	70.39	74.48	74.48	0.26	0.30	0.31	0.00	0.09	Matched[5734]
YPL228W	CET1	"Beta (RNA 5'-triphosphatase) subunit of the mRNA capping enzyme, a heterodimer (the other subunit is CEG1, a guanylyltransferase) involved in adding the 5' cap to mRNA; the mammalian enzyme is a single bifunctional polypeptide"	Verified	chr16:118382-120031	118382-120031	98.6%	148.68	124.10	149.29	159.12	169.57	125.95	136.39	154.21	147.76	0.50	0.63	0.61	-0.06	0.20	Matched[5735]
YPL227C	ALG5	"UDP-glucose:dolichyl-phosphate glucosyltransferase, involved in asparagine-linked glycosylation in the endoplasmic reticulum"	Verified	chr16:120163-121167	120163-121167	99.3%	274.66	257.62	278.67	254.62	126.31	79.19	266.14	266.64	102.75	0.98	1.08	0.43	-1.38	-1.44	Matched[5736]
YPL226W	NEW1	"ATP binding cassette family member; Asn/Gln-rich rich region supports [NU+] prion formation, susceptibility to [PSI+] prion induction and aggregation of a fragment of the human Machado-Joseph Disease protein"	Verified	chr16:121767-125357	121767-125357	98.8%	527.60	422.75	393.16	352.29	39.18	38.33	475.17	372.73	38.75	1.75	1.51	0.16	-3.27	-2.52	Matched[5737]
YPL225W		"Protein of unknown function that may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm"	Verified	chr16:126006-126446	126006-126446	98.7%	937.75	1038.88	1031.99	896.38	3031.60	1728.40	988.32	964.18	2380.00	3.65	3.91	9.86	1.30	0.45	Matched[5738]
YPL224C	MMT2	Putative metal transporter involved in mitochondrial iron accumulation; closely related to Mmt1p	Verified	chr16:126738-128087	126738-128087	99.0%	117.49	134.70	120.48	145.92	246.20	213.27	126.09	133.20	229.73	0.47	0.54	0.95	0.79	0.90	Matched[5739]
YPL223C	GRE1	"Hydrophilin of unknown function; stress induced (osmotic, ionic, oxidative, heat shock and heavy metals); regulated by the HOG pathway"	Verified	chr16:128631-129137	128631-129137	98.9%	23.92	31.90	25.92	29.91	151.52	89.72	27.91	27.91	120.62	0.10	0.11	0.50	2.11	1.16	Covered/w/another[5740]
YPL222W		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr16:130161-132227	130161-132227	98.5%	30.46	58.47	38.33	46.19	204.41	207.35	44.47	42.26	205.88	0.16	0.17	0.85	2.28	2.51	Covered/w/another[5740]
YPL222C-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr16:131869-132114	131869-132114	98.3%	33.07	86.82	62.02	74.42	376.23	260.47	59.95	68.22	318.35	0.22	0.28	1.32	2.22	NaN	Covered/w/another[5740]
YPL221W	FLC1	Putative FAD transporter; required for uptake of FAD into endoplasmic reticulum; involved in cell wall maintenance	Verified	chr16:133042-135423	133042-135423	98.8%	181.95	195.13	162.39	133.91	154.31	169.19	188.54	148.15	161.75	0.70	0.60	0.67	0.13	0.73	Matched[5741]
YPL220W	RPL1A	"N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl1Bp and has similarity to E. coli L1 and rat L10a ribosomal proteins; rpl1a rpl1b double null mutation is lethal"	Verified	chr16:135789-136442	135789-136442	6.6%	5114.75	3286.40	4235.29	3610.41	810.03	995.18	4200.58	3922.85	902.60	15.51	15.92	3.74	-2.12	-1.94	Frag<80[5742,5743,5744,5745]
YPL219W	PCL8	"Cyclin, interacts with Pho85p cyclin-dependent kinase (Cdk) to phosphorylate and regulate glycogen synthase, also activates Pho85p for Glc8p phosphorylation"	Verified	chr16:136749-138227	136749-138227	98.8%	63.67	99.96	76.68	82.84	138.30	122.55	81.81	79.76	130.42	0.30	0.32	0.54	0.71	0.80	Frag>80[5744,5745,5746,5747]
YPL218W	SAR1	"GTPase, GTP-binding protein of the ARF family, component of COPII coat of vesicles; required for transport vesicle formation during ER to Golgi protein transport"	Verified	chr16:138697-139408	138697-138724,138864-139408	99.0%	1673.60	1521.93	1504.30	1361.45	1636.56	1015.80	1597.77	1432.88	1326.18	5.90	5.82	5.49	-0.11	-0.14	Matched[5748]
YPL217C	BMS1	"Essential conserved nucleolar GTP-binding protein required for synthesis of 40S ribosomal subunits and for processing of the 35S pre-rRNA at sites A0, A1, and A2; interacts with Rcl1p, has similarity to Tsr1p"	Verified	chr16:139619-143170	139619-143170	99.3%	259.70	147.43	159.05	131.55	22.40	17.01	203.57	145.30	19.70	0.75	0.59	0.08	-2.88	-2.17	Matched[5749]
YPL216W		Putative protein of unknown function; YPL216W is not an essential gene	Uncharacterized	chr16:143820-147128	143820-147128	98.7%	43.77	37.95	34.59	34.28	41.01	23.57	40.86	34.43	32.29	0.15	0.14	0.13	-0.09	-0.10	Matched[5750]
YPL215W	CBP3	Mitochondrial protein required for assembly of ubiquinol cytochrome-c reductase complex (cytochrome bc1 complex); interacts with Cbp4p and function is partially redundant with that of Cbp4p	Verified	chr16:147415-148422	147415-148422	98.7%	253.26	271.35	282.40	250.24	277.38	184.92	262.30	266.32	231.15	0.97	1.08	0.96	-0.20	-0.06	Matched[5751]
YPL214C	THI6	"Bifunctional enzyme with thiamine-phosphate pyrophosphorylase and 4-methyl-5-beta-hydroxyethylthiazole kinase activities, required for thiamine biosynthesis; GFP-fusion protein localizes to the cytoplasm in a punctate pattern"	Verified	chr16:148568-150190	148568-150190	98.9%	120.19	148.84	118.95	96.53	137.63	98.40	134.52	107.74	118.01	0.50	0.44	0.49	0.13	0.08	Matched[5752]
YPL213W	LEA1	Component of U2 snRNP; disruption causes reduced U2 snRNP levels; physically interacts with Msl1p; invovled in telomere maintenance; putative homolog of human U2A' snRNP protein	Verified	chr16:150613-151329	150613-151329	98.6%	89.15	108.96	79.25	75.00	96.23	76.42	99.06	77.12	86.32	0.37	0.31	0.36	0.16	-0.13	Matched[5753]
YPL212C	PUS1	"tRNA:pseudouridine synthase, introduces pseudouridines at positions 26-28, 34-36, 65, and 67 of tRNA; nuclear protein that appears to be involved in tRNA export; also acts on U2 snRNA"	Verified	chr16:151514-153148	151514-153148	99.2%	333.53	303.94	224.41	225.64	19.11	9.86	318.73	225.03	14.49	1.18	0.91	0.06	-3.96	-3.16	Matched[5754]
YPL211W	NIP7	"Nucleolar protein required for 60S ribosome subunit biogenesis, constituent of 66S pre-ribosomal particles; physically interacts with Nop8p and the exosome subunit Rrp43p"	Verified	chr16:153494-154039	153494-154039	98.7%	602.88	272.69	430.36	341.32	29.68	5.57	437.78	385.84	17.62	1.62	1.57	0.07	-4.45	-4.24	Matched[5755]
YPL210C	SRP72	Core component of the signal recognition particle (SRP) ribonucleoprotein (RNP) complex that functions in targeting nascent secretory proteins to the endoplasmic reticulum (ER) membrane	Verified	chr16:154289-156211	154289-156211	99.3%	385.91	338.78	342.45	325.69	242.43	176.46	362.34	334.07	209.45	1.34	1.36	0.87	-0.67	-0.49	Matched[5756]
YPL209C	IPL1	"Aurora kinase involved in regulating kinetochore-microtubule attachments; helps maintain condensed chromosomes during anaphase and early telophase; associates with Sli15p, which promotes Ipl1p association with mitotic spindle"	Verified	chr16:156489-157592	156489-157592	99.3%	41.97	31.93	41.97	31.02	38.32	20.07	36.95	36.49	29.20	0.14	0.15	0.12	-0.32	0.48	Matched[5757]
YPL208W	RKM1	"SET-domain lysine-N-methyltransferase, catalyzes the formation of dimethyllysine residues on the large ribsomal subunit protein L23a (RPL23A and RPL23B)"	Verified	chr16:157841-159592	157841-159592	98.9%	155.20	182.89	139.62	140.20	166.16	113.08	169.04	139.91	139.62	0.62	0.57	0.58	-0.00	-0.06	Matched[5758]
YPL207W	TYW1	"Protein required for the synthesis of wybutosine, a modified guanosine found at the 3'-position adjacent to the anticodon of phenylalanine tRNA which supports reading frame maintenance by stabilizing codon-anticodon interactions"	Verified	chr16:159908-162340	159908-162340	98.5%	208.30	166.56	170.73	144.85	27.13	16.70	187.43	157.79	21.92	0.69	0.64	0.09	-2.85	-2.15	Matched[5759]
YPL206C		Protein that plays a role in metabolism of glycerophosphocholine to phosphatidylcholine; contains glycerophosphodiester phosphodiesterase motifs	Uncharacterized	chr16:162631-163596	162631-163596	99.2%	306.76	364.14	343.27	339.10	622.90	405.88	335.45	341.19	514.39	1.24	1.38	2.13	0.59	0.75	Matched[5760]
YPL205C		Hypothetical protein; deletion of locus affects telomere length	Dubious	chr16:163921-164265	163921-164265	98.2%	185.89	185.89	159.33	165.23	138.68	168.18	185.89	162.28	153.43	0.69	0.66	0.64	-0.08	-0.05	Covered/w/another[5761]
YPL204W	HRR25	"Protein kinase involved in regulating diverse events including vesicular trafficking, DNA repair, and chromosome segregation; binds the CTD of RNA pol II; homolog of mammalian casein kinase 1delta (CK1delta)"	Verified	chr16:164275-165759	164275-165759	98.7%	530.33	614.96	557.63	520.77	494.16	387.00	572.65	539.20	440.58	2.11	2.19	1.83	-0.29	-0.17	Matched[5761]
YPL203W	TPK2	cAMP-dependent protein kinase catalytic subunit; promotes vegetative growth in response to nutrients via the Ras-cAMP signaling pathway; inhibited by regulatory subunit Bcy1p in the absence of cAMP; partially redundant with Tpk1p and Tpk3p	Verified	chr16:166255-167397	166255-167397	98.8%	177.10	200.12	243.51	266.53	620.72	495.87	188.61	255.02	558.29	0.70	1.04	2.31	1.13	1.59	Matched[5762]
YPL202C	AFT2	Iron-regulated transcriptional activator; activates genes involved in intracellular iron use and required for iron homeostasis and resistance to oxidative stress; similar to Aft1p	Verified	chr16:168087-169337	168087-169337	99.1%	143.53	158.05	115.31	89.51	104.02	91.93	150.79	102.41	97.97	0.56	0.42	0.41	-0.06	0.62	Matched[5763]
YPL201C	YIG1	Protein that interacts with glycerol 3-phosphatase and plays a role in anaerobic glycerol production; localizes to the nucleus and cytosol	Verified	chr16:169769-171154	169769-171154	99.2%	19.64	19.64	7.28	5.82	4.37	21.10	19.64	6.55	12.73	0.07	0.03	0.05	0.96	-0.35	Frag<80[5764]
YPL200W	CSM4	Protein required for accurate chromosome segregation during meiosis	Verified	chr16:171483-171953	171483-171953	98.8%	12.89	8.59	8.59	4.30	2.15	4.30	10.74	6.44	3.22	0.04	0.03	0.01	-1.00	-0.19	
YPL199C		Hypothetical protein	Uncharacterized	chr16:172032-172754	172032-172754	99.4%	384.04	417.44	361.78	269.94	198.98	119.67	400.74	315.86	159.32	1.48	1.28	0.66	-0.99	-0.81	Frag>80[5765,5766]
YPL198W	RPL7B	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl7Ap and has similarity to E. coli L30 and rat L7 ribosomal proteins; contains a conserved C-terminal Nucleic acid Binding Domain (NDB2)"	Verified	chr16:173151-174701	173151-173161,173571-173664,174072-174701	26.8%	1120.64	1014.16	856.96	431.02	187.62	35.50	1067.40	643.99	111.56	3.94	2.61	0.46	-2.53	-2.06	Frag<80[5766,5767,5768]
YPL197C		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data; partially overlaps the ribosomal gene RPB7B"	Dubious	chr16:174342-174755	174342-174755	30.6%	1546.35	1317.55	1049.31	568.05	205.13	15.78	1431.95	808.68	110.45	5.29	3.28	0.46	-2.87	-0.09	Frag<80[5768]
YPL196W	OXR1	"Protein of unknown function required for normal levels of resistance to oxidative damage, null mutants are sensitive to hydrogen peroxide; member of a conserved family of proteins found in eukaryotes but not in prokaryotes"	Verified	chr16:175042-175863	175042-175863	98.6%	143.12	177.67	151.76	156.69	563.85	303.52	160.39	154.23	433.68	0.59	0.63	1.80	1.49	1.39	Matched[5769]
YPL195W	APL5	"Delta adaptin-like subunit of the clathrin associated protein complex (AP-3); functions in transport of alkaline phosphatase to the vacuole via the alternate pathway, suppressor of loss of casein kinase 1 function"	Verified	chr16:176222-179020	176222-179020	98.8%	289.92	288.48	263.53	262.81	301.13	258.11	289.20	263.17	279.62	1.07	1.07	1.16	0.09	0.43	Matched[5770]
YPL194W	DDC1	"DNA damage checkpoint protein, part of a PCNA-like complex required for DNA damage response, required for pachytene checkpoint to inhibit cell cycle in response to unrepaired recombination intermediates; potential Cdc28p substrate"	Verified	chr16:179276-181114	179276-181114	98.6%	39.70	46.31	39.15	35.84	41.90	35.29	43.00	37.49	38.59	0.16	0.15	0.16	0.04	0.45	Covered/w/another[5771]
YPL193W	RSA1	Protein involved in the assembly of 60S ribosomal subunits; functionally interacts with Dbp6p; functions in a late nucleoplasmic step of the assembly	Verified	chr16:181402-182547	181402-182547	98.7%	141.47	102.57	102.57	106.99	121.14	85.77	122.02	104.78	103.45	0.45	0.43	0.43	-0.02	-0.07	Covered/w/another[5771]
YPL192C	PRM3	Pheromone-regulated protein required for karyogamy; localizes to the inner membrane of the nuclear envelope	Verified	chr16:182654-183055	182654-183055	99.2%	115.34	50.15	65.19	35.10	47.64	27.58	82.74	50.15	37.61	0.31	0.20	0.16	-0.42	-1.39	Covered/w/another[5771]
YPL191C		Putative protein of unknown function; diploid deletion strain exhibits high budding index; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr16:183596-184678	183596-184678	99.3%	55.81	74.42	45.58	40.93	126.51	63.25	65.11	43.25	94.88	0.24	0.18	0.39	1.13	0.85	Covered/w/another[5771]
YPL190C	NAB3	Single stranded RNA binding protein; acidic ribonucleoprotein; required for termination of non-poly(A) transcripts and efficient splicing; interacts with Nrd1p	Verified	chr16:185316-187724	185316-187724	97.2%	290.48	264.43	256.74	209.32	242.64	291.77	277.46	233.03	267.20	1.02	0.95	1.11	0.20	0.70	Frag>80[5772,5773]
YPL189C-A		Putative protein of unknown function; identified by homology to Ashbya gossypii	Uncharacterized	chr16:188306-188512	188306-188512	98.4%	225.77	265.03	319.02	260.12	603.68	441.72	245.40	289.57	522.70	0.91	1.18	2.17	0.85	NaN	Matched[5774]
YPL189W	GUP2	Probable membrane protein with a possible role in proton symport of glycerol; member of the MBOAT family of putative membrane-bound O-acyltransferases; Gup1p homolog	Verified	chr16:189153-190982	189153-190982	98.9%	17.12	19.88	14.36	13.81	7.73	21.54	18.50	14.08	14.64	0.07	0.06	0.06	0.06	-0.18	
YPL188W	POS5	"Mitochondrial NADH kinase, phosphorylates NADH; also phosphorylates NAD(+) with lower specificity; required for the response to oxidative stress"	Verified	chr16:191405-192649	191405-192649	98.8%	81.26	115.38	104.01	88.57	159.26	135.70	98.32	96.29	147.48	0.36	0.39	0.61	0.62	1.09	Matched[5775]
YPL187W	MF(ALPHA)1	"Mating pheromone alpha-factor, made by alpha cells; interacts with mating type a cells to induce cell cycle arrest and other responses leading to mating; also encoded by MF(ALPHA)2, although MF(ALPHA)1 produces most alpha-factor"	Verified	chr16:193647-194144	193647-194144	72.7%	5.52	11.05	2.76	2.76	0.00	8.29	8.29	2.76	4.14	0.03	0.01	0.02	0.58	-0.05	
YPL185W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene UIP4/YPL186C"	Dubious	chr16:195252-195647	195252-195647	99.0%	25.50	50.99	40.79	43.34	446.19	334.01	38.24	42.07	390.10	0.14	0.17	1.62	3.21	0.12	Frag>80[5777,5778]
YPL186C	UIP4	"Protein that interacts with Ulp1p, a Ubl (ubiquitin-like protein)-specific protease for Smt3p protein conjugates; detected in a phosphorylated state in the mitochondrial outer membrane; also detected in ER and nuclear envelope"	Verified	chr16:194511-195425	194511-195425	99.3%	38.53	117.78	72.65	86.96	1375.96	887.22	78.15	79.81	1131.59	0.29	0.32	4.69	3.83	3.56	Matched[5777]
YPL184C		Putative RNA binding protein	Uncharacterized	chr16:195949-197787	195949-197787	98.6%	424.29	433.11	370.77	387.87	200.28	236.70	428.70	379.32	218.49	1.58	1.54	0.91	-0.80	0.14	Covered[5779]
YPL183W-A		"Homolog of the prokaryotic ribosomal protein L36, likely to be a mitochondrial ribosomal protein coded in the nuclear genome"	Uncharacterized	chr16:199094-199375	199094-199375	98.8%	305.16	362.60	369.78	305.16	502.62	326.70	333.88	337.47	414.66	1.23	1.37	1.72	0.30	-0.07	Matched[5780]
YPL183C		Cytoplasmic protein of unknown function	Uncharacterized	chr16:199494-202535	199494-202535	99.2%	140.89	97.79	81.55	65.30	15.25	8.29	119.34	73.43	11.77	0.44	0.30	0.05	-2.64	-2.31	Matched[5781]
YPL181W	CTI6	Protein that relieves transcriptional repression by binding to the Cyc8p-Tup1p corepressor and recruiting the SAGA complex to the repressed promoter; contains a PHD finger domain	Verified	chr16:203420-204940	203420-204940	98.1%	155.48	172.91	143.42	125.32	141.41	107.90	164.20	134.37	124.65	0.61	0.55	0.52	-0.11	0.05	Matched[5782]
YPL182C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene CTI6/YPL181W"	Dubious	chr16:203305-203688	203305-203688	97.9%	101.03	79.76	95.71	58.49	47.86	58.49	90.40	77.10	53.17	0.33	0.31	0.22	-0.54	-0.08	Covered/w/another[5782]
YPL180W	TCO89	"Subunit of TORC1 (Tor1p or Tor2p-Kog1p-Lst8p-Tco89p), a complex that regulates growth in response to nutrient availability; cooperates with Ssd1p in the maintenance of cellular integrity; deletion strains are hypersensitive to rapamycin"	Verified	chr16:205247-207646	205247-207646	98.6%	89.54	108.13	88.70	79.41	92.08	87.85	98.83	84.05	89.97	0.36	0.34	0.37	0.10	0.64	Covered/w/another[5783]
YPL179W	PPQ1	Putative protein serine/threonine phosphatase; null mutation enhances efficiency of translational suppressors	Verified	chr16:208156-209805	208156-209805	99.0%	314.68	312.84	310.39	225.91	222.23	174.48	313.76	268.15	198.36	1.16	1.09	0.82	-0.43	-0.02	Covered/w/another[5783]
YPL178W	CBC2	"Small subunit of the heterodimeric cap binding complex that also contains Sto1p, component of the spliceosomal commitment complex; interacts with Npl3p, possibly to package mRNA for export from the nucleus; contains an RNA-binding motif"	Verified	chr16:212157-212783	212157-212783	98.7%	534.88	452.46	555.88	442.77	424.99	323.19	493.67	499.33	374.09	1.82	2.03	1.55	-0.42	-0.09	Matched[5785]
YPL177C	CUP9	"Homeodomain-containing transcriptional repressor of PTR2, which encodes a major peptide transporter; imported peptides activate ubiquitin-dependent proteolysis, resulting in degradation of Cup9p and de-repression of PTR2 transcription"	Verified	chr16:213041-213961	213041-213961	98.9%	328.32	325.02	311.85	224.00	341.49	264.63	326.67	267.92	303.06	1.21	1.09	1.26	0.18	0.55	Matched[5786]
YPL176C	TRE1	Plasma membrane protein that binds to Bsd2p and regulates ubiquitylation and vacuolar degradation of the metal transporter Smf1p; function is redundant with that of Tre2p; has similarity to transferrin receptors	Verified	chr16:216011-218362	216011-218362	99.0%	122.80	113.78	114.64	123.23	147.27	155.86	118.29	118.94	151.57	0.44	0.48	0.63	0.35	1.07	Matched[5790]
YPL175W	SPT14	"UDP-GlcNAc-binding and catalytic subunit of the enzyme that mediates the first step in glycosylphosphatidylinositol (GPI) biosynthesis, mutations cause defects in transcription and in biogenesis of cell wall proteins"	Verified	chr16:218629-220087	218629-218645,218746-220087	98.8%	110.28	87.18	72.28	53.65	49.92	34.28	98.73	62.96	42.10	0.36	0.26	0.17	-0.58	-0.59	Covered/w/another[5791]
YPL174C	NIP100	"Large subunit of the dynactin complex, which is involved in partitioning the mitotic spindle between mother and daughter cells; putative ortholog of mammalian p150(glued)"	Verified	chr16:220166-222772	220166-222772	99.4%	73.35	81.07	52.12	52.89	45.17	28.57	77.21	52.51	36.87	0.29	0.21	0.15	-0.51	-0.04	Covered/w/another[5791]
YPL173W	MRPL40	Mitochondrial ribosomal protein of the large subunit	Verified	chr16:223142-224035	223142-224035	98.4%	184.11	187.52	219.34	218.20	222.75	159.11	185.81	218.77	190.93	0.69	0.89	0.79	-0.20	0.20	Covered/w/another[5792]
YPL172C	COX10	"Heme A:farnesyltransferase, catalyzes the first step in the conversion of protoheme to the heme A prosthetic group required for cytochrome c oxidase activity; human ortholog is associated with mitochondrial disorders"	Verified	chr16:224352-225740	224352-225740	98.8%	106.35	91.06	109.27	87.41	135.49	82.31	98.70	98.34	108.90	0.36	0.40	0.45	0.15	0.20	Covered/w/another[5792]
YPL171C	OYE3	"Widely conserved NADPH oxidoreductase containing flavin mononucleotide (FMN), homologous to Oye2p with slight differences in ligand binding and catalytic properties; may be involved in sterol metabolism"	Verified	chr16:226168-227370	226168-227370	98.8%	9.26	5.05	3.37	7.58	18.52	15.99	7.15	5.47	17.26	0.03	0.02	0.07	1.66	1.20	
YPL170W	DAP1	"Heme-binding protein involved in regulation of cytochrome P450 protein Erg11p; damage response protein, related to mammalian membrane progesterone receptors; mutations lead to defects in telomeres, mitochondria, and sterol synthesis"	Verified	chr16:228313-228771	228313-228771	98.2%	206.23	441.28	272.75	226.18	731.77	476.76	323.75	249.47	604.27	1.20	1.01	2.50	1.28	0.82	Frag>80[5793,5794]
YPL169C	MEX67	"Poly(A)RNA binding protein involved in nuclear mRNA export, component of the nuclear pore; ortholog of human TAP"	Verified	chr16:229038-230837	229038-230837	99.0%	226.70	212.67	191.91	187.42	193.03	212.11	219.69	189.67	202.57	0.81	0.77	0.84	0.09	0.62	Matched[5795]
YPL168W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the mitochondrion; expression may be cell cycle-regulated	Uncharacterized	chr16:231216-232508	231216-232508	98.7%	79.91	112.81	92.44	72.07	223.27	105.76	96.36	82.26	164.51	0.36	0.33	0.68	1.00	0.74	Matched[5796]
YPL167C	REV3	"Catalytic subunit of DNA polymerase zeta, which is involved in DNA repair and translesion synthesis; required for mutagenesis induced by DNA damage"	Verified	chr16:232592-237106	232592-237106	99.2%	33.49	38.85	27.02	23.22	32.82	30.59	36.17	25.12	31.71	0.13	0.10	0.13	0.34	0.24	Frag<80[5797,5798]
YPL166W	ATG29	Protein specifically required for autophagy; may function in autophagosome formation at the pre-autophagosomal structure in collaboration with other autophagy proteins	Verified	chr16:237337-237978	237337-237978	98.6%	56.86	86.86	77.39	58.44	208.48	165.83	71.86	67.91	187.15	0.27	0.28	0.78	1.46	1.68	Covered/w/another[5799]
YPL165C	SET6	"Protein of unknown function; deletion heterozygote is sensitive to compounds that target ergosterol biosynthesis, may be involved in compound availability"	Verified	chr16:237955-239076	237955-239076	99.1%	107.88	140.24	142.04	97.99	411.73	234.63	124.06	120.01	323.18	0.46	0.49	1.34	1.43	0.09	Matched[5799]
YPL164C	MLH3	Protein involved in DNA mismatch repair and crossing-over during meiotic recombination; forms a complex with Mlh1p; mammalian homolog is implicated mammalian microsatellite instability	Verified	chr16:239349-241496	239349-241496	99.1%	47.91	43.68	48.38	38.51	96.76	71.39	45.80	43.45	84.08	0.17	0.18	0.35	0.95	1.35	Matched[5800]
YPL163C	SVS1	"Cell wall and vacuolar protein, required for wild-type resistance to vanadate"	Verified	chr16:241917-242699	241917-242699	98.5%	987.58	808.73	977.21	767.25	125.72	49.25	898.15	872.23	87.48	3.32	3.54	0.36	-3.32	-2.86	Matched[5801]
YPL162C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the membrane of vacuole with cell cycle-correlated morphology	Uncharacterized	chr16:243205-244026	243205-244026	98.9%	108.22	120.52	92.24	91.01	111.91	89.78	114.37	91.62	100.85	0.42	0.37	0.42	0.14	0.95	Covered/w/another[5802]
YPL161C	BEM4	Protein involved in establishment of cell polarity and bud emergence; interacts with the Rho1p small GTP-binding protein and with the Rho-type GTPase Cdc42p; involved in maintenance of proper telomere length	Verified	chr16:244318-246219	244318-246219	99.3%	66.19	78.89	66.19	50.83	70.95	60.36	72.54	58.51	65.66	0.27	0.24	0.27	0.17	0.11	Covered/w/another[5802]
YPL160W	CDC60	"Cytosolic leucyl tRNA synthetase, ligates leucine to the appropriate tRNA"	Verified	chr16:246989-250261	246989-250261	98.7%	836.93	790.21	752.47	719.36	156.25	172.03	813.57	735.91	164.14	3.00	2.99	0.68	-2.16	-1.49	Matched[5803]
YPL159C	PET20	"Mitochondrial protein, required for respiratory growth under some conditions and for stability of the mitochondrial genome"	Verified	chr16:250906-251667	250906-251667	99.0%	169.63	176.26	144.45	143.13	250.47	206.74	172.94	143.79	228.60	0.64	0.58	0.95	0.67	0.89	Matched[5804]
YPL158C		Hypothetical protein	Uncharacterized	chr16:252033-254309	252033-254309	97.6%	197.06	173.22	153.87	125.07	298.74	224.51	185.14	139.47	261.62	0.68	0.57	1.08	0.91	0.61	Matched[5805]
YPL157W	TGS1	"Trimethyl guanosine synthase, conserved nucleolar methyl transferase responsible for conversion of the m(7)G cap structure of snRNAs and snoRNAs to m(2,2,7)G; also required for ribosome synthesis and nucleolar morphology"	Verified	chr16:254813-255760	254813-255760	98.5%	129.59	112.45	112.45	96.39	76.04	38.55	121.02	104.42	57.30	0.45	0.42	0.24	-0.87	-0.62	Covered/w/another[5806]
YPL156C	PRM4	"Pheromone-regulated protein, predicted to have 1 transmembrane segment; transcriptionally regulated by Ste12p during mating and by Cat8p during the diauxic shift"	Verified	chr16:255912-256766	255912-256766	99.0%	141.72	115.74	126.37	102.75	138.18	94.48	128.73	114.56	116.33	0.48	0.47	0.48	0.02	0.22	Covered/w/another[5806]
YPL155C	KIP2	"Kinesin-related motor protein involved in mitotic spindle positioning, stabilizes microtubules by targeting Bik1p to the plus end; Kip2p levels are controlled during the cell cycle"	Verified	chr16:257215-259335	257215-259335	99.1%	88.52	83.29	71.87	48.55	63.78	59.02	85.91	60.21	61.40	0.32	0.24	0.25	0.03	0.62	Covered/w/another[5806]
YPL154C	PEP4	"Vacuolar aspartyl protease (proteinase A), required for the posttranslational precursor maturation of vacuolar proteinases; important for protein turnover after oxidative damage; synthesized as a zymogen, self-activates"	Verified	chr16:259713-260930	259713-260930	98.9%	2570.18	3285.78	2930.47	2747.01	5142.86	4574.20	2927.98	2838.74	4858.53	10.81	11.52	20.13	0.78	0.61	Frag>80[5807,5808]
YPL153C	RAD53	"Protein kinase, required for cell-cycle arrest in response to DNA damage; activated by trans autophosphorylation when interacting with hyperphosphorylated Rad9p; also interacts with ARS1 and plays a role in initiation of DNA replication"	Verified	chr16:261726-264191	261726-264191	99.3%	51.47	49.84	50.66	37.18	29.41	25.74	50.66	43.92	27.57	0.19	0.18	0.11	-0.67	-0.46	Matched[5809]
YPL152W-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr16:264601-264699	264601-264699	99.0%	20.40	10.20	10.20	0.00	0.00	0.00	15.30	5.10	0.00	0.06	0.02	0.00	-Inf	NaN	
YPL152W	RRD2	"Activator of the phosphotyrosyl phosphatase activity of PP2A,peptidyl-prolyl cis/trans-isomerase; regulates G1 phase progression, the osmoresponse, microtubule dynamics; subunit of the Tap42p-Pph21p-Rrd2p complex"	Verified	chr16:265027-266103	265027-266103	98.8%	95.82	90.19	83.61	51.67	207.62	140.92	93.01	67.64	174.27	0.34	0.27	0.72	1.37	1.54	Matched[5810]
YPL151C	PRP46	Splicing factor that is found in the Cef1p subcomplex of the spliceosome	Verified	chr16:266179-267534	266179-267534	99.2%	94.46	103.38	90.74	81.81	197.84	160.65	98.92	86.27	179.24	0.37	0.35	0.74	1.05	1.25	Matched[5811]
YPL150W		Putative protein kinase of unknown cellular role	Uncharacterized	chr16:268187-270892	268187-270892	98.7%	68.87	67.74	58.76	53.15	122.76	100.31	68.31	55.95	111.53	0.25	0.23	0.46	1.00	1.06	Matched[5812]
YPL149W	ATG5	Conserved autophagy-related protein that undergoes conjugation with Atg12p and then associates with Atg16p to form a cytosolic complex essential for autophagosome formation	Verified	chr16:271309-272193	271309-272193	98.9%	99.42	92.57	66.28	41.14	65.14	27.43	96.00	53.71	46.28	0.35	0.22	0.19	-0.21	-0.45	Matched[5813]
YPL148C	PPT2	"Phosphopantetheine:protein transferase (PPTase), activates mitochondrial acyl carrier protein (Acp1p) by phosphopantetheinylation"	Verified	chr16:272293-272814	272293-272814	98.9%	71.64	89.06	48.40	60.02	104.55	40.66	80.35	54.21	72.60	0.30	0.22	0.30	0.42	0.05	Covered/w/another[5813]
YPL147W	PXA1	"Subunit of a heterodimeric peroxisomal ATP-binding cassette transporter complex (Pxa1p-Pxa2p), required for import of long-chain fatty acids into peroxisomes; similarity to human adrenoleukodystrophy transporter and ALD-related proteins"	Verified	chr16:273254-275866	273254-275866	98.8%	13.94	18.20	22.46	17.82	61.97	36.02	16.07	20.14	49.00	0.06	0.08	0.20	1.28	1.22	Frag<80[5814]
YPL146C	NOP53	Nucleolar protein; involved in biogenesis of the 60S subunit of the ribosome; interacts with rRNA processing factors Cbf5p and Nop2p; null mutant is viable but growth is severely impaired	Verified	chr16:276161-277528	276161-277528	99.0%	360.16	192.63	227.31	188.94	67.16	28.78	276.39	208.12	47.97	1.02	0.84	0.20	-2.12	-2.15	Matched[5815]
YPL145C	KES1	"Member of the oxysterol binding protein family, which includes seven yeast homologs; involved in negative regulation of Sec14p-dependent Golgi complex secretory functions, peripheral membrane protein that localizes to the Golgi complex"	Verified	chr16:278394-279698	278394-279698	98.8%	773.69	704.70	721.75	700.05	425.61	364.36	739.20	710.90	394.99	2.73	2.89	1.64	-0.85	-0.23	Matched[5817]
YPL144W	POC4	"Chaperone component involved in 20S proteasome assembly; forms a heterodimer with Irc25p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; null mutant is viable, exhibits shortened telomeres"	Verified	chr16:280479-280925	280479-280925	98.9%	153.86	162.91	158.39	156.12	74.67	36.20	158.39	157.25	55.44	0.58	0.64	0.23	-1.50	-1.35	Matched[5818]
YPL143W	RPL33A	"N-terminally acetylated ribosomal protein L37 of the large (60S) ribosomal subunit, nearly identical to Rpl33Bp and has similarity to rat L35a; rpl33a null mutant exhibits slow growth while rpl33a rpl33b double null mutant is inviable"	Verified	chr16:282121-282969	282121-282139,282665-282969	91.6%	10171.09	8579.86	9021.49	7983.14	2235.15	2029.50	9375.47	8502.32	2132.32	34.61	34.51	8.83	-2.00	-2.77	Frag>80[5820,5821]
YPL142C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified ORF RPL33A/YPL143W, a component of the large (60S) ribosomal subunit"	Dubious	chr16:282685-283002	282685-283002	94.9%	10354.37	8846.29	9313.63	8203.29	2313.49	2045.02	9600.33	8758.46	2179.26	35.44	35.55	9.03	-2.01	-1.62	Matched[5821]
YPL141C		Putative protein kinase; similar to Kin4p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YPL141C is not an essential gene	Uncharacterized	chr16:283463-286060	283463-286060	98.9%	99.98	107.76	96.48	91.81	79.75	98.81	103.87	94.15	89.28	0.38	0.38	0.37	-0.08	0.73	Matched[5822]
YPL140C	MKK2	"Mitogen-activated kinase kinase involved in protein kinase C signaling pathway that controls cell integrity; upon activation by Bck1p phosphorylates downstream target, Slt2p; functionally redundant with Mkk1p"	Verified	chr16:287513-289033	287513-289033	99.1%	100.86	104.84	74.32	62.37	81.62	42.47	102.85	68.35	62.04	0.38	0.28	0.26	-0.14	0.43	Matched[5825]
YPL139C	UME1	"Negative regulator of meiosis, required for repression of a subset of meiotic genes during vegetative growth, binding of histone deacetylase Rpd3p required for activity, contains a NEE box and a WD repeat motif; homologous with Wtm1p, Wtm2p"	Verified	chr16:289668-291050	289668-291050	99.2%	121.72	124.64	123.91	123.18	100.58	80.90	123.18	123.54	90.74	0.45	0.50	0.38	-0.45	0.03	Frag>80[5826,5827]
YPL138C	SPP1	"Subunit of COMPASS (Set1C), a complex which methylates histone H3 on lysine 4 and is required in telomeric transcriptional silencing; PHD finger domain protein similar to human CGBP, an unmethylated CpG binding protein"	Verified	chr16:291365-292426	291365-292426	99.4%	103.23	114.60	89.97	76.71	101.34	48.30	108.91	83.34	74.82	0.40	0.34	0.31	-0.16	-0.17	Matched[5828]
YPL136W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the verified gene GIP3/YPL137C"	Dubious	chr16:296285-296653	296285-296653	98.8%	101.51	126.20	82.30	76.82	38.41	131.69	113.85	79.56	85.05	0.42	0.32	0.35	0.10	1.00	Covered/w/another[5829]
YPL137C	GIP3	"Glc7-interacting protein whose overexpression relocalizes Glc7p from the nucleus and prevents chromosome segregation; may interact with ribosomes, based on co-purification experiments"	Verified	chr16:292816-296646	292816-296646	98.9%	137.27	171.06	140.96	139.12	119.32	185.58	154.16	140.04	152.45	0.57	0.57	0.63	0.12	0.99	Covered/w/another[5829]
YPL135W	ISU1	"Conserved protein of the mitochondrial matrix, performs a scaffolding function during assembly of iron-sulfur clusters, interacts physically and functionally with yeast frataxin (Yfh1p); isu1 isu2 double mutant is inviable"	Verified	chr16:297552-298049	297552-298049	98.3%	330.78	412.46	367.53	316.49	818.79	494.13	371.62	342.01	656.46	1.37	1.39	2.72	0.94	1.36	Matched[5830]
YPL135C-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr16:297677-297850	297677-297850	98.5%	279.95	431.59	361.60	309.11	734.87	408.26	355.77	335.36	571.57	1.31	1.36	2.37	0.77	NaN	Matched[5830]
YPL134C	ODC1	"Mitochondrial inner membrane transporter, exports 2-oxoadipate and 2-oxoglutarate from the mitochondrial matrix to the cytosol for lysine and glutamate biosynthesis and lysine catabolism; suppresses, in multicopy, an fmc1 null mutation"	Verified	chr16:298570-299502	298570-299502	98.9%	127.87	143.04	193.98	215.65	213.48	115.95	135.46	204.81	164.72	0.50	0.83	0.68	-0.31	-0.15	Covered/w/another[5831]
YPL133C	RDS2	Zinc cluster transcriptional activator involved in conferring resistance to ketoconazole	Verified	chr16:299887-301227	299887-301227	99.1%	89.54	100.08	77.50	55.68	106.85	71.48	94.81	66.59	89.16	0.35	0.27	0.37	0.42	0.91	Covered/w/another[5831]
YPL132W	COX11	Mitochondrial inner membrane protein required for delivery of copper to the Cox1p subunit of cytochrome c oxidase; association with mitochondrial ribosomes suggests that copper delivery may occur during translation of Cox1p	Verified	chr16:301715-302617	301715-302617	98.7%	201.90	210.87	188.44	170.49	281.53	154.79	206.38	179.46	218.16	0.76	0.73	0.90	0.28	0.14	Covered/w/another[5831]
YPL131W	RPL5	Protein component of the large (60S) ribosomal subunit with similarity to E. coli L18 and rat L5 ribosomal proteins; binds 5S rRNA and is required for 60S subunit assembly	Verified	chr16:303120-304013	303120-304013	98.8%	9047.71	7472.18	7917.32	6451.65	1491.72	961.63	8259.95	7184.48	1226.67	30.49	29.16	5.08	-2.55	-2.83	Matched[5832]
YPL130W	SPO19	"Meiosis-specific protein of unknown function, involved in completion of nuclear divisions; identified as a weak high-copy suppressor of the spo1-1 ts mutation; putative GPI-dependent cell-wall protein"	Verified	chr16:304386-305057	304386-305057	98.8%	3.01	3.01	0.00	1.51	0.00	6.02	3.01	0.75	3.01	0.01	0.00	0.01	2.00	-0.05	
YPL129W	TAF14	"Subunit of TFIID, TFIIF, INO80, SWI/SNF, and NuA3 complexes, involved in RNA polymerase II transcription initiation and in chromatin modification; contains a YEATS domain"	Verified	chr16:305297-306136	305297-305305,305411-306136	98.4%	519.70	469.94	454.73	398.06	328.96	219.77	494.82	426.40	274.36	1.83	1.73	1.14	-0.64	-0.64	Matched[5833]
YPL128C	TBF1	Telobox-containing general regulatory factor; binds to TTAGGG repeats within subtelomeric anti-silencing regions (STARs) and possibly throughout the genome and mediates their insulating capacity by blocking silent chromatin propagation	Verified	chr16:306532-308220	306532-308220	98.7%	142.11	128.92	127.12	102.53	81.55	83.35	135.51	114.83	82.45	0.50	0.47	0.34	-0.48	-0.15	Matched[5834]
YPL127C	HHO1	"Histone H1, a linker histone required for nucleosome packaging at restricted sites; suppresses DNA repair involving homologous recombination; not required for telomeric silencing, basal transcriptional repression, or efficient sporulation"	Verified	chr16:308827-309603	308827-309603	98.9%	726.33	670.35	712.01	718.52	636.51	471.20	698.34	715.26	553.86	2.58	2.90	2.29	-0.37	-0.19	Matched[5836]
YPL126W	1	"U3 snoRNP protein, component of the small (ribosomal) subunit (SSU) processosome containing U3 snoRNA; required for the biogenesis of18S rRNA"	Verified	chr16:310209-312899	310209-312899	99.0%	252.55	123.84	136.59	105.07	14.26	3.75	188.19	120.83	9.01	0.69	0.49	0.04	-3.75	-3.01	Matched[5837]
YPL125W	KAP120	Karyopherin with a role in the assembly or export of 60S ribosomal subunits	Verified	chr16:313387-316485	313387-316485	99.0%	101.34	94.49	103.94	63.87	64.19	35.84	97.92	83.90	50.02	0.36	0.34	0.21	-0.75	-0.31	Matched[5838]
YPL124W	SPC29	"Inner plaque spindle pole body (SPB) component, links the central plaque component Spc42p to the inner plaque component Spc110p; required for SPB duplication"	Verified	chr16:316754-317515	316754-317515	98.5%	65.30	49.31	50.64	61.30	89.28	58.63	57.30	55.97	73.96	0.21	0.23	0.31	0.40	0.66	Matched[5839]
YPL123C	RNY1	RNAse; member of the T(2) family of endoribonucleases	Verified	chr16:317640-318944	317640-318944	99.3%	66.35	191.35	124.22	158.94	629.59	443.64	128.85	141.58	536.62	0.48	0.57	2.22	1.92	1.81	Matched[5840]
YPL122C	TFB2	"Subunit of TFIIH and nucleotide excision repair factor 3 complexes, involved in transcription initiation, required for nucleotide excision repair, similar to 52 kDa subunit of human TFIIH"	Verified	chr16:319225-320766	319225-320766	99.2%	147.12	146.47	126.85	115.08	64.08	54.27	146.79	120.96	59.17	0.54	0.49	0.25	-1.03	-0.50	Matched[5841]
YPL121C	MEI5	"Meiosis specific protein involved in DMC1-dependent meiotic recombination, forms heterodimer with Sae3p; proposed to be an assembly factor for Dmc1p"	Verified	chr16:320961-321629	320961-321629	99.6%	6.00	1.50	3.00	4.50	1.50	1.50	3.75	3.75	1.50	0.01	0.02	0.01	-1.32	0.92	
YPL120W	VPS30	"Protein that forms a membrane-associated complex with Apg14p that is essential for autophagy; involved in a retrieval step of the carboxypeptidase Y receptor, Vps10p, to the late Golgi from the endosome; involved in vacuolar protein sorting"	Verified	chr16:322070-323743	322070-323743	98.8%	64.09	76.18	66.51	69.53	129.99	101.57	70.13	68.02	115.78	0.26	0.28	0.48	0.77	1.04	Covered/w/another[5842]
YPL119C-A		Putative protein of unknown function; identified by expression profiling and mass spectrometry	Uncharacterized	chr16:324023-324286	324023-324286	98.4%	65.44	69.29	65.44	38.49	196.31	96.23	67.36	51.96	146.27	0.25	0.21	0.61	1.49	NaN	Covered/w/another[5842]
YPL119C	DBP1	Putative ATP-dependent RNA helicase of the DEAD-box protein family; mutants show reduced stability of the 40S ribosomal subunit scanning through 5' untranslated regions of mRNAs	Verified	chr16:324410-326263	324410-326263	99.1%	36.47	39.19	40.28	38.64	80.55	66.95	37.83	39.46	73.75	0.14	0.16	0.31	0.90	1.21	Covered/w/another[5842]
YPL118W	MRP51	Mitochondrial ribosomal protein of the small subunit; MRP51 exhibits genetic interactions with mutations in the COX2 and COX3 mRNA 5'-untranslated leader sequences	Verified	chr16:326627-327661	326627-327661	98.6%	452.72	454.68	476.24	449.78	692.80	480.16	453.70	463.01	586.48	1.67	1.88	2.43	0.34	0.01	Matched[5843]
YPL117C	IDI1	"Isopentenyl diphosphate:dimethylallyl diphosphate isomerase (IPP isomerase), catalyzes an essential activation step in the isoprenoid biosynthetic pathway; required for viability"	Verified	chr16:327863-328729	327863-328729	99.2%	611.42	505.64	507.97	446.36	226.67	172.03	558.53	477.16	199.35	2.06	1.94	0.83	-1.26	-1.10	Matched[5844]
YPL116W	HOS3	"Trichostatin A-insensitive homodimeric histone deacetylase (HDAC) with specificity in vitro for histones H3, H4, H2A, and H2B; similar to Hda1p, Rpd3p, Hos1p, and Hos2p; deletion results in increased histone acetylation at rDNA repeats"	Verified	chr16:329605-331698	329605-331698	98.7%	135.45	132.55	150.45	139.32	205.12	191.09	134.00	144.89	198.10	0.49	0.59	0.82	0.45	0.71	Covered/w/another[5845]
YPL115C	BEM3	"Rho GTPase activating protein (RhoGAP) involved in control of the cytoskeleton organization; targets the essential Rho-GTPase Cdc42p, which controls establishment and maintenance of cell polarity, including bud-site assembly"	Verified	chr16:332099-335485	332099-335485	99.0%	131.22	120.79	104.08	96.63	82.61	93.94	126.00	100.36	88.28	0.47	0.41	0.37	-0.19	0.42	Covered/w/another[5845]
YPL114W		"Dubious open reading frame, unlikely to encode a functional protein; largely overlaps ORF YPL113C; diploid deletion in BY4743 strain background exhibits high budding index"	Dubious	chr16:335947-336366	335947-336366	99.0%	45.69	50.50	67.33	50.50	158.70	43.28	48.09	58.91	100.99	0.18	0.24	0.42	0.78	0.76	Covered/w/another[5845]
YPL113C		Glyoxylate reductase; acts on glyoxylate and hydroxypyruvate substrates; YPL113C is not an essential gene	Uncharacterized	chr16:335952-337142	335952-337142	99.2%	43.16	55.86	58.40	55.01	111.72	43.16	49.51	56.71	77.44	0.18	0.23	0.32	0.45	0.49	Covered/w/another[5845]
YPL112C	PEX25	"Peripheral peroxisomal membrane peroxin required for the regulation of peroxisome size and maintenance, recruits GTPase Rho1p to peroxisomes, induced by oleate, interacts with homologous protein Pex27p"	Verified	chr16:337435-338619	337435-338619	99.2%	206.78	156.57	183.80	125.94	138.70	105.52	181.68	154.87	122.11	0.67	0.63	0.51	-0.34	-0.13	Covered/w/another[5845]
YPL111W	CAR1	"Arginase, responsible for arginine degradation, expression responds to both induction by arginine and nitrogen catabolite repression; disruption enhances freeze tolerance"	Verified	chr16:339943-340944	339943-340944	98.4%	515.02	218.98	708.66	598.15	1171.97	1015.84	367.00	653.40	1093.90	1.35	2.65	4.53	0.74	0.93	Matched[5846]
YPL110C	GDE1	"Glycerophosphocholine (GroPCho) phosphodiesterase; hydrolyzes GroPCho to choline and glycerolphosphate, for use as a phosphate source and as a precursor for phosphocholine synthesis; may interact with ribosomes"	Verified	chr16:341067-344738	341067-344738	99.2%	74.94	63.96	79.61	60.39	53.53	51.61	69.45	70.00	52.57	0.26	0.28	0.22	-0.41	0.28	Matched[5847]
YPL109C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr16:345263-347388	345263-345443,345596-347388	99.2%	41.38	47.00	39.34	42.40	77.65	55.17	44.19	40.87	66.41	0.16	0.17	0.28	0.70	0.97	Matched[5848]
YPL108W		Cytoplasmic protein of unknown function; non-essential gene that is induced in a GDH1 deleted strain with altered redox metabolism; GFP-fusion protein is induced in response to the DNA-damaging agent MMS	Uncharacterized	chr16:348443-348949	348443-348949	98.2%	86.39	44.20	80.36	68.31	32.14	14.06	65.29	74.33	23.10	0.24	0.30	0.10	-1.69	-1.33	Covered/w/another[5850]
YPL107W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to mitochondria; YPL107W is not an essential gene	Uncharacterized	chr16:349116-349862	349116-349862	98.2%	95.40	114.48	113.12	103.58	119.93	81.77	104.94	108.35	100.85	0.39	0.44	0.42	-0.10	-0.21	Matched[5850]
YPL106C	SSE1	ATPase that is a component of the heat shock protein Hsp90 chaperone complex; binds unfolded proteins; member of the heat shock protein 70 (HSP70) family; localized to the cytoplasm	Verified	chr16:350191-352272	350191-352272	98.7%	1950.43	1349.74	1728.63	1789.43	7677.69	7949.58	1650.08	1759.03	7813.63	6.09	7.14	32.37	2.15	1.74	Frag>80[5851,5852,5853]
YPL105C		"Protein of unknown function that may interact with ribosomes, based on co-purification experiments; authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr16:352860-355409	352860-355409	98.9%	396.95	352.14	346.98	308.12	230.00	246.65	374.54	327.55	238.33	1.38	1.33	0.99	-0.46	0.28	Matched[5854]
YPL104W	MSD1	"Mitochondrial aspartyl-tRNA synthetase, required for acylation of aspartyl-tRNA; yeast and bacterial aspartyl-, asparaginyl-, and lysyl-tRNA synthetases contain regions with high sequence similarity, suggesting a common ancestral gene"	Verified	chr16:355697-357673	355697-357673	98.6%	91.83	105.68	110.81	112.35	140.05	133.38	98.75	111.58	136.71	0.36	0.45	0.57	0.29	0.82	Covered/w/another[5855]
YPL103C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr16:357997-359403	357997-359403	98.9%	77.60	91.25	98.43	74.01	89.81	76.16	84.42	86.22	82.99	0.31	0.35	0.34	-0.06	0.15	Covered/w/another[5855]
YPL101W	ELP4	"Subunit of Elongator complex, which is required for modification of wobble nucleosides in tRNA; required for Elongator structural integrity"	Verified	chr16:360206-361576	360206-361576	98.6%	150.96	127.28	139.86	102.86	56.24	31.08	139.12	121.36	43.66	0.51	0.49	0.18	-1.47	-0.86	Matched[5856]
YPL102C		"Dubious open reading frame, not conserved in closely related Saccharomyces species; deletion mutation enhances replication of Brome mosaic virus in S. cerevisiae, but this is likely due to effects on the overlapping gene ELP4"	Dubious	chr16:360000-360302	360000-360302	98.2%	36.99	33.62	47.07	43.71	26.90	13.45	35.30	45.39	20.17	0.13	0.18	0.08	-1.17	0.32	Overlap[5856]
YPL100W	ATG21	"Phosphatidylinositol 3,5-bisphosphate-binding protein required for maturation of pro-aminopeptidase I, predicted to fold as a seven-bladed beta-propeller; displays punctate cytoplasmic localization"	Verified	chr16:361869-363359	361869-363359	98.8%	127.56	107.21	109.24	109.24	210.34	139.78	117.38	109.24	175.06	0.43	0.44	0.73	0.68	0.73	Matched[5857]
YPL099C		"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr16:363517-364065	363517-364065	99.2%	152.40	128.53	168.92	167.09	293.78	167.09	140.46	168.01	230.43	0.52	0.68	0.95	0.46	-0.11	Frag<80[5858,5859]
YPL098C	MGR2	Protein required for growth of cells lacking the mitochondrial genome	Verified	chr16:364383-364724	364383-364724	98.6%	361.75	391.40	406.23	426.98	539.66	426.98	376.58	416.60	483.32	1.39	1.69	2.00	0.21	0.29	Matched[5859]
YPL097W	MSY1	Mitochondrial tyrosyl-tRNA synthetase	Verified	chr16:364949-366427	364949-366427	98.6%	75.39	71.97	84.30	55.52	140.51	98.01	73.68	69.91	119.26	0.27	0.28	0.49	0.77	0.77	Covered/w/another[5860]
YPL096C-A	ERI1	Endoplasmic reticulum membrane protein that binds to and inhibits GTP-bound Ras2p at the ER; component of the GPI-GnT complex which catalyzes the first step in GPI-anchor biosynthesis; probable homolog of mammalian PIG-Y protein	Verified	chr16:366526-366732	366526-366732	98.4%	216.04	181.67	191.49	157.12	211.13	122.75	198.85	174.30	166.94	0.73	0.71	0.69	-0.06	NaN	Covered/w/another[5860]
YPL096W	PNG1	"Conserved peptide N-glycanase required for deglycosylation of misfolded glycoproteins during proteasome-dependent degradation, localizes to the cytoplasm and nucleus, interacts with the DNA repair protein Rad23p"	Verified	chr16:366924-368015	366924-368015	98.6%	136.57	145.86	125.42	120.78	196.96	136.57	141.21	123.10	166.76	0.52	0.50	0.69	0.44	0.30	Covered/w/another[5860]
YPL095C	EEB1	Acyl-coenzymeA:ethanol O-acyltransferase responsible for the major part of medium-chain fatty acid ethyl ester biosynthesis during fermentation; possesses short chain esterase activity; may be involved in lipid metabolism and detoxification	Verified	chr16:368068-369438	368068-369438	99.0%	750.05	510.59	605.64	565.11	277.77	145.88	630.32	585.37	211.83	2.33	2.38	0.88	-1.47	-1.50	Matched[5861]
YPL094C	SEC62	"Essential subunit of Sec63 complex (Sec63p, Sec62p, Sec66p and Sec72p); with Sec61 complex, Kar2p/BiP and Lhs1p forms a channel competent for SRP-dependent and post-translational SRP-independent protein targeting and import into the ER"	Verified	chr16:369836-370660	369836-370660	98.9%	795.02	711.72	709.27	645.57	526.75	365.05	753.37	677.42	445.90	2.78	2.75	1.85	-0.60	-0.49	Frag>80[5862,5863]
YPL093W	NOG1	Putative GTPase that associates with free 60S ribosomal subunits in the nucleolus and is required for 60S ribosomal subunit biogenesis; constituent of 66S pre-ribosomal particles; member of the ODN family of nucleolar G-proteins	Verified	chr16:370975-372918	370975-372918	98.6%	582.02	327.00	303.53	234.69	25.03	4.17	454.51	269.11	14.60	1.68	1.09	0.06	-4.20	-3.46	Frag>80[5864,5865]
YPL092W	SSU1	Plasma membrane sulfite pump involved in sulfite metabolism and required for efficient sulfite efflux; major facilitator superfamily protein	Verified	chr16:373790-375166	373790-375166	98.9%	176.93	321.57	176.93	153.44	86.63	57.27	249.25	165.19	71.95	0.92	0.67	0.30	-1.20	-1.10	Matched[5866]
YPL091W	GLR1	"Cytosolic and mitochondrial glutathione oxidoreductase, converts oxidized glutathione to reduced glutathione"	Verified	chr16:375499-376950	375499-376950	98.6%	681.66	562.23	720.08	657.22	687.95	565.03	621.95	688.65	626.49	2.30	2.80	2.60	-0.14	0.39	Matched[5867]
YPL090C	RPS6A	Protein component of the small (40S) ribosomal subunit; identical to Rps6Bp and has similarity to rat S6 ribosomal protein	Verified	chr16:377288-378392	377288-377992,378387-378392	13.2%	8173.84	5470.51	7247.89	5928.16	1564.52	1085.59	6822.17	6588.03	1325.06	25.18	26.74	5.49	-2.31	-3.68	Frag<80[5868,5869,5870]
YPL089C	RLM1	"MADS-box transcription factor, component of the protein kinase C-mediated MAP kinase pathway involved in the maintenance of cell integrity; phosphorylated and activated by the MAP-kinase Slt2p"	Verified	chr16:379117-381147	379117-381147	98.1%	137.54	143.06	128.00	119.47	132.52	124.49	140.30	123.73	128.50	0.52	0.50	0.53	0.05	0.55	Covered/w/another[5871]
YPL088W		Putative aryl alcohol dehydrogenase; transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in multidrug resistance	Uncharacterized	chr16:381962-382990	381962-382990	98.5%	56.24	56.24	33.54	27.62	51.30	35.52	56.24	30.58	43.41	0.21	0.12	0.18	0.51	0.28	Covered/w/another[5871]
YPL087W	YDC1	"Alkaline dihydroceramidase, involved in sphingolipid metabolism; preferentially hydrolyzes dihydroceramide to a free fatty acid and dihydrosphingosine; has a minor reverse activity"	Verified	chr16:383452-384405	383452-384405	98.9%	380.36	608.16	432.28	471.48	1371.00	1011.83	494.26	451.88	1191.42	1.82	1.83	4.94	1.40	1.39	Matched[5872]
YPL086C	ELP3	"Subunit of Elongator complex, which is required for modification of wobble nucleosides in tRNA; exhibits histone acetyltransferase activity that is directed to histones H3 and H4; disruption confers resistance to K. lactis zymotoxin"	Verified	chr16:384770-386443	384770-386443	99.3%	194.85	121.48	140.13	140.13	25.26	8.42	158.17	140.13	16.84	0.58	0.57	0.07	-3.06	-2.53	Matched[5873]
YPL085W	SEC16	"COPII vesicle coat protein required for ER transport vesicle budding and autophagosome formation; Sec16p is bound to the periphery of ER membranes and may act to stabilize initial COPII complexes; interacts with Sec23p, Sec24p and Sec31p"	Verified	chr16:387064-393651	387064-393651	98.7%	162.94	158.33	144.80	135.73	55.34	142.65	160.64	140.27	98.99	0.59	0.57	0.41	-0.50	0.38	Matched[5874]
YPL084W	BRO1	Cytoplasmic class E vacuolar protein sorting (VPS) factor that coordinates deubiquitination in the multivesicular body (MVB) pathway by recruiting Doa4p to endosomes	Verified	chr16:394035-396569	394035-396569	98.7%	131.03	163.78	156.99	150.60	239.28	231.69	147.41	153.80	235.49	0.54	0.62	0.98	0.61	1.00	Matched[5875]
YPL083C	SEN54	"Subunit of the tRNA splicing endonuclease, which is composed of Sen2p, Sen15p, Sen34p, and Sen54p"	Verified	chr16:396699-398102	396699-398102	99.0%	106.44	107.16	100.68	101.40	81.98	64.72	106.80	101.04	73.35	0.39	0.41	0.30	-0.46	-0.23	Matched[5876]
YPL082C	MOT1	"Essential abundant protein involved in regulation of transcription, removes Spt15p (TBP) from DNA via its C-terminal ATPase activity, forms a complex with TBP that binds TATA DNA with high affinity but with altered specificity"	Verified	chr16:398477-404080	398477-404080	99.1%	102.84	89.69	66.46	49.35	32.78	53.13	96.27	57.90	42.96	0.36	0.24	0.18	-0.43	0.17	Matched[5877]
YPL081W	RPS9A	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps9Bp and has similarity to E. coli S4 and rat S9 ribosomal proteins	Verified	chr16:404947-406041	404947-404953,405455-406041	72.1%	1285.88	1211.20	982.50	431.74	165.69	51.34	1248.54	707.12	108.52	4.61	2.87	0.45	-2.70	-2.68	Matched[5878]
YPL080C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr16:406169-406495	406169-406495	98.4%	124.29	105.64	83.89	21.75	31.07	9.32	114.97	52.82	20.20	0.42	0.21	0.08	-1.39	-0.34	Overlap[5878]
YPL079W	RPL21B	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl21Ap and has similarity to rat L21 ribosomal protein"	Verified	chr16:406633-407536	406633-406643,407065-407536	58.9%	7820.58	6300.79	6824.98	5987.69	1438.87	1488.13	7060.69	6406.33	1463.50	26.06	26.00	6.06	-2.13	-2.08	Matched[5879]
YPL078C	ATP4	"Subunit b of the stator stalk of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis; phosphorylated"	Verified	chr16:408007-408741	408007-408741	99.1%	1264.75	1410.31	1325.17	1632.77	1969.22	1325.17	1337.53	1478.97	1647.19	4.94	6.00	6.82	0.16	-0.10	Frag>80[5880,5881]
YPL077C		Putative protein of unknown function; regulates PIS1 expression; mutant displays spore wall assembly defect in ether sensitivity screen; YPL077C is not an essential gene	Uncharacterized	chr16:409365-410087	409365-410087	99.2%	43.22	41.82	39.04	46.01	78.07	41.82	42.52	42.52	59.95	0.16	0.17	0.25	0.50	0.96	Matched[5882]
YPL076W	GPI2	"Protein involved in the synthesis of N-acetylglucosaminyl phosphatidylinositol (GlcNAc-PI), the first intermediate in the synthesis of glycosylphosphatidylinositol (GPI) anchors; homologous to the human PIG-C protein"	Verified	chr16:410440-411282	410440-411282	99.3%	93.22	109.95	75.30	84.86	135.05	102.78	101.59	80.08	118.92	0.38	0.33	0.49	0.57	-0.32	Frag<80[5883]
YPL075W	GCR1	Transcriptional activator of genes involved in glycolysis; DNA-binding protein that interacts and functions with the transcriptional activator Gcr2p	Verified	chr16:412251-415359	412251-412258,413010-415359	98.9%	297.30	295.59	232.52	177.18	197.34	169.89	296.44	204.85	183.62	1.09	0.83	0.76	-0.16	0.43	Matched[5885]
YPL074W	YTA6	"Putative ATPase of the CDC48/PAS1/SEC18 (AAA) family, localized to the cortex of mother cells but not to daughter cells"	Verified	chr16:415760-418024	415760-418024	98.4%	89.26	84.33	72.67	64.14	76.70	83.43	86.80	68.40	80.07	0.32	0.28	0.33	0.23	0.51	Covered/w/another[5886]
YPL072W	UBP16	"Deubiquitinating enzyme anchored to the outer mitochondrial membrane, probably not important for general mitochondrial functioning, but may perform a more specialized function at mitochondria"	Verified	chr16:418509-420008	418509-420008	99.0%	106.43	113.84	107.10	103.74	98.35	79.49	110.14	105.42	88.92	0.41	0.43	0.37	-0.25	-0.01	Covered/w/another[5886]
YPL073C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps with verified gene UBP16/YPL072W; may interact with ribosome based on co-purification experiments"	Dubious	chr16:418496-418981	418496-418981	99.0%	76.88	93.50	95.58	116.35	78.95	89.34	85.19	105.96	84.15	0.31	0.43	0.35	-0.33	0.40	Covered/w/another[5886]
YPL071C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus	Uncharacterized	chr16:420045-420515	420045-420515	99.4%	155.96	162.36	106.82	91.86	213.64	153.82	159.16	99.34	183.73	0.59	0.40	0.76	0.89	0.53	Covered/w/another[5886]
YPL070W	MUK1	Cytoplasmic protein of unknown function; computational analysis of large-scale protein-protein interaction data suggests a possible role in transcriptional regulation	Verified	chr16:420945-422783	420945-422783	99.0%	90.65	112.08	84.06	82.41	156.03	110.98	101.36	83.23	133.50	0.37	0.34	0.55	0.68	0.82	Matched[5887]
YPL069C	BTS1	"Geranylgeranyl diphosphate synthase, increases the intracellular pool of geranylgeranyl diphosphate, suppressor of bet2 mutation that causes defective geranylgeranylation of small GTP-binding proteins that mediate vesicular traffic"	Verified	chr16:422882-423889	422882-423889	98.9%	92.25	101.27	93.25	95.25	70.19	42.11	96.76	94.25	56.15	0.36	0.38	0.23	-0.75	0.06	Matched[5888]
YPL068C		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus and is induced in response to the DNA-damaging agent MMS	Uncharacterized	chr16:424212-425093	424212-425093	98.8%	57.40	53.96	57.40	43.62	19.52	12.63	55.68	50.51	16.07	0.21	0.21	0.07	-1.65	-1.44	Covered/w/another[5889]
YPL067C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YPL067C is not an essential gene	Uncharacterized	chr16:425248-425844	425248-425844	98.3%	97.13	59.64	64.75	52.83	95.43	57.94	78.39	58.79	76.68	0.29	0.24	0.32	0.38	0.30	Covered/w/another[5889]
YPL066W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the bud neck and cytoplasm; null mutant is viable and exhibits growth defect on a non-fermentable (respiratory) carbon source	Uncharacterized	chr16:426230-427669	426230-427669	99.2%	193.23	238.03	181.32	156.12	165.92	121.12	215.63	168.72	143.52	0.80	0.68	0.59	-0.23	0.49	Covered/w/another[5889]
YPL065W	VPS28	"Component of the ESCRT-I complex, which is involved in ubiquitin-dependent sorting of proteins into the endosome; involved in transport of precursors for soluble vacuolar hydrolases from the late endosome to the vacuole"	Verified	chr16:427924-428652	427924-428652	99.2%	186.65	171.44	152.08	146.55	309.70	161.76	179.04	149.32	235.73	0.66	0.61	0.98	0.66	0.45	Covered/w/another[5890]
YPL064C	CWC27	"Component of a complex containing Cef1p, putatively involved in pre-mRNA splicing; has similarity to S. pombe Cwf27p"	Verified	chr16:428708-429613	428708-429613	99.4%	197.60	235.35	212.04	203.15	188.72	137.66	216.48	207.60	163.19	0.80	0.84	0.68	-0.35	-0.08	Covered/w/another[5890]
YPL063W	TIM50	Constituent of the mitochondrial inner membrane presequence translocase (TIM23 complex); may promote binding of incoming precursor proteins to the intermembrane space domain of Tom22p during translocation	Verified	chr16:429936-431366	429936-431366	98.5%	604.17	599.91	639.62	592.82	424.05	350.30	602.04	616.22	387.18	2.22	2.50	1.60	-0.67	-0.36	Matched[5891]
YPL062W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; YPL062W is not an essential gene; homozygous diploid mutant shows a decrease in glycogen accumulation"	Dubious	chr16:431892-432296	431892-432296	97.8%	2.53	5.05	10.10	0.00	10.10	10.10	3.79	5.05	10.10	0.01	0.02	0.04	1.00	0.71	Frag<80[5892]
YPL061W	ALD6	"Cytosolic aldehyde dehydrogenase, activated by Mg2+ and utilizes NADP+ as the preferred coenzyme; required for conversion of acetaldehyde to acetate; constitutively expressed; locates to the mitochondrial outer surface upon oxidative stress"	Verified	chr16:432585-434087	432585-434087	98.7%	1024.69	2716.10	4473.58	3735.40	7822.03	4423.70	1870.40	4104.49	6122.86	6.90	16.66	25.37	0.58	-0.36	Matched[5893]
YPL060W	LPE10	"Mitochondrial inner membrane magnesium transporter, involved in maintenance of magnesium concentrations inside mitochondria; indirectly affects splicing of group II introns; functionally and structurally related to Mrs2p"	Verified	chr16:434520-435761	434520-435761	98.9%	39.09	39.91	42.35	39.91	85.51	65.97	39.50	41.13	75.74	0.15	0.17	0.31	0.88	0.77	Matched[5894]
YPL059W	GRX5	Hydroperoxide and superoxide-radical responsive glutathione-dependent oxidoreductase; mitochondrial matrix protein involved in the synthesis/assembly of iron-sulfur centers; monothiol glutaredoxin subfamily member along with Grx3p and Grx4p	Verified	chr16:444576-445028	444576-445028	98.4%	536.02	542.75	603.31	464.26	760.30	533.78	539.39	533.78	647.04	1.99	2.17	2.68	0.28	0.02	Matched[5895]
YPL058C	PDR12	"Plasma membrane ATP-binding cassette (ABC) transporter, weak-acid-inducible multidrug transporter required for weak organic acid resistance; induced by sorbate and benzoate and regulated by War1p; mutants exhibit sorbate hypersensitivity"	Verified	chr16:445839-450374	445839-450374	98.9%	353.45	264.70	178.18	182.41	103.69	185.09	309.08	180.29	144.39	1.14	0.73	0.60	-0.32	0.68	Frag>80[5896,5897,5898]
YPL057C	SUR1	"Probable catalytic subunit of a mannosylinositol phosphorylceramide (MIPC) synthase, forms a complex with probable regulatory subunit Csg2p; function in sphingolipid biosynthesis is overlapping with that of Csh1p"	Verified	chr16:451906-453054	451906-453054	98.9%	176.09	251.81	218.35	174.33	270.30	192.82	213.95	196.34	231.56	0.79	0.80	0.96	0.24	0.58	Matched[5900]
YPL056C		Putative protein of unknown function; deletion mutant is fluconazole resistant	Uncharacterized	chr16:453427-453732	453427-453732	97.3%	90.68	124.27	80.60	60.45	134.34	40.30	107.47	70.53	87.32	0.40	0.29	0.36	0.31	0.01	
YPL055C	LGE1	Protein of unknown function; null mutant forms abnormally large cells	Verified	chr16:453989-454987	453989-454987	99.0%	136.55	167.90	160.82	144.64	172.96	138.57	152.23	152.73	155.77	0.56	0.62	0.65	0.03	-0.09	Matched[5901]
YPL054W	LEE1	Zinc-finger protein of unknown function	Verified	chr16:455756-456661	455756-456661	99.2%	37.84	52.30	71.22	57.87	90.14	53.41	45.07	64.54	71.78	0.17	0.26	0.30	0.15	0.50	Matched[5902]
YPL053C	KTR6	Probable mannosylphosphate transferase involved in the synthesis of core oligosaccharides in protein glycosylation pathway; member of the KRE2/MNT1 mannosyltransferase family	Verified	chr16:457115-458455	457115-458455	99.4%	309.98	267.95	276.21	291.22	210.91	144.11	288.97	283.71	177.51	1.07	1.15	0.74	-0.68	-0.56	Matched[5903]
YPL052W	OAZ1	"Regulator of ornithine decarboxylase (Spe1p), antizyme that binds to Spe1p to regulate ubiquitin-independent degradation; ribosomal frameshifting during synthesis of Oaz1p and its ubiquitin-mediated degradation are both polyamine-regulated"	Verified	chr16:458796-459675	458796-459675	99.1%	61.91	75.67	45.86	29.81	64.20	38.98	68.79	37.83	51.59	0.25	0.15	0.21	0.45	-0.53	Frag>80[5904,5905]
YPL051W	ARL3	GTPase of the Ras superfamily required to recruit Arl1p to the Golgi; similar to ADP-ribosylation factor	Verified	chr16:459960-460556	459960-460556	98.3%	107.31	115.83	110.72	110.72	103.90	74.95	111.57	110.72	89.43	0.41	0.45	0.37	-0.31	-0.42	Matched[5906]
YPL050C	MNN9	"Subunit of Golgi mannosyltransferase complex also containing Anp1p, Mnn10p, Mnn11p, and Hoc1p that mediates elongation of the polysaccharide mannan backbone; forms a separate complex with Van1p that is also involved in backbone elongation"	Verified	chr16:460776-461963	460776-461963	99.1%	674.19	501.82	561.26	521.35	298.04	206.33	588.01	541.31	252.18	2.17	2.20	1.04	-1.10	-0.61	Matched[5907]
YPL049C	DIG1	"Regulatory protein of unknown function, constitutively-expressed, involved in the regulation of mating-specific genes and the invasive growth pathway, required for MAP-kinase imposed repression, inhibits pheromone-responsive transcription"	Verified	chr16:462478-463836	462478-463836	98.4%	421.84	560.21	458.49	388.93	341.06	279.73	491.02	423.71	310.40	1.81	1.72	1.29	-0.45	0.03	Matched[5908]
YPL048W	CAM1	Nuclear protein required for transcription of MXR1; binds the MXR1 promoter in the presence of other nuclear factors; binds calcium and phospholipids; has similarity to translational cofactor EF-1 gamma	Verified	chr16:464398-465645	464398-465645	95.8%	1166.53	1394.14	1230.13	1092.05	1326.36	1052.72	1280.33	1161.09	1189.54	4.73	4.71	4.93	0.03	0.17	Matched[5909]
YPL047W	SGF11	"Integral subunit of SAGA histone acetyltransferase complex, regulates transcription of a subset of SAGA-regulated genes, required for the Ubp8p association with SAGA and for H2B deubiquitylation"	Verified	chr16:465959-466258	465959-466258	98.5%	213.20	216.58	182.74	152.28	162.44	67.68	214.89	167.51	115.06	0.79	0.68	0.48	-0.54	-0.58	Covered/w/another[5910]
YPL046C	ELC1	"Elongin C, forms heterodimer with Ela1p that participates in transcription elongation; required for ubiquitin-dependent degradation of the RNA Polymerase II subunit RPO21; expression dramatically upregulated during sporulation"	Verified	chr16:466641-466940	466641-466940	99.3%	93.99	87.27	93.99	120.84	164.48	177.90	90.63	107.41	171.19	0.33	0.44	0.71	0.67	-0.03	Covered/w/another[5910]
YPL045W	VPS16	Subunit of the vacuole fusion and protein sorting HOPS complex and the CORVET tethering complex; part of the Class C Vps complex essential for membrane docking and fusion at Golgi-to-endosome and endosome-to-vacuole protein transport stages	Verified	chr16:467257-469653	467257-469653	98.8%	110.25	115.32	78.57	96.74	106.87	91.67	112.79	87.65	99.27	0.42	0.36	0.41	0.18	0.19	Matched[5911]
YPL043W	NOP4	"Nucleolar protein, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis; constituent of 66S pre-ribosomal particles; contains four RNA recognition motifs (RRMs)"	Verified	chr16:469936-471993	469936-471993	98.1%	428.24	172.28	246.54	189.61	22.28	4.95	300.26	218.08	13.61	1.11	0.89	0.06	-4.00	-4.42	Matched[5912]
YPL044C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene NOP4/YPL043W"	Dubious	chr16:469923-470471	469923-470471	98.2%	257.92	102.06	139.17	120.61	11.13	3.71	179.99	129.89	7.42	0.66	0.53	0.03	-4.13	-1.19	Covered/w/another[5912]
YPL042C	SSN3	"Cyclin-dependent protein kinase, component of RNA polymerase II holoenzyme; involved in phosphorylation of the RNA polymerase II C-terminal domain; involved in glucose repression"	Verified	chr16:473037-474704	473037-474704	99.1%	94.98	96.19	85.30	68.97	118.57	83.48	95.58	77.13	101.03	0.35	0.31	0.42	0.39	0.64	Covered/w/another[5913]
YPL041C		Protein of unknown function involved in maintenance of proper telomere length	Uncharacterized	chr16:475115-475738	475115-475738	98.7%	66.55	79.54	51.94	58.44	97.40	45.45	73.05	55.19	71.42	0.27	0.22	0.30	0.37	0.21	Covered/w/another[5913]
YPL040C	ISM1	"Mitochondrial isoleucyl-tRNA synthetase, null mutant is deficient in respiratory growth"	Verified	chr16:475990-478998	475990-478998	99.1%	62.02	65.37	58.33	54.98	49.95	45.26	63.70	56.66	47.61	0.24	0.23	0.20	-0.25	-0.01	Covered/w/another[5913]
YPL039W		Putative protein of unknown function; YPL039W is not an essential gene	Uncharacterized	chr16:479222-480172	479222-480172	98.7%	88.43	82.04	77.78	82.04	119.33	79.91	85.23	79.91	99.62	0.31	0.32	0.41	0.32	0.26	Covered/w/another[5914]
YPL038W-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr16:480179-480370	480179-480370	99.3%	68.20	57.70	62.95	47.21	41.97	36.72	62.95	55.08	39.34	0.23	0.22	0.16	-0.49	NaN	Covered/w/another[5914]
YPL038W	MET31	"Zinc-finger DNA-binding protein, involved in transcriptional regulation of the methionine biosynthetic genes, similar to Met32p"	Verified	chr16:480532-481065	480532-481065	98.3%	184.88	156.29	141.04	104.83	188.69	114.36	170.58	122.94	151.52	0.63	0.50	0.63	0.30	-0.25	Covered/w/another[5914]
YPL037C	EGD1	"Subunit beta1 of the nascent polypeptide-associated complex (NAC) involved in protein targeting, associated with cytoplasmic ribosomes; enhances DNA binding of the Gal4p activator; homolog of human BTF3b"	Verified	chr16:481425-481898	481425-481898	98.7%	5233.84	4419.59	4842.74	4443.10	3579.70	2788.96	4826.71	4642.92	3184.33	17.82	18.85	13.19	-0.54	-1.36	Matched[5915]
YPL036W	PMA2	"Plasma membrane H+-ATPase, isoform of Pma1p, involved in pumping protons out of the cell; regulator of cytoplasmic pH and plasma membrane potential"	Verified	chr16:482841-485684	482841-485684	87.9%	20.79	19.59	17.19	9.60	14.79	20.39	20.19	13.39	17.59	0.07	0.05	0.07	0.39	-0.23	Frag<80[5916,5917]
YPL034W		Putative protein of unknown function; YPL034W is not essential gene	Uncharacterized	chr16:486710-487207	486710-487207	98.9%	166.57	178.76	121.88	91.41	201.10	105.63	172.66	106.64	153.36	0.64	0.43	0.64	0.52	0.57	Matched[5918]
YPL035C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized gene YPL034W; YPL035C is not an essential gene"	Dubious	chr16:486562-486909	486562-486909	98.7%	130.96	125.14	116.41	98.95	139.69	125.14	128.05	107.68	132.41	0.47	0.44	0.55	0.30	-0.06	Matched[5918]
YPL033C		Putative protein of unknown function; may be involved in DNA metabolism; expression is induced by Kar4p	Uncharacterized	chr16:487360-488205	487360-488205	99.3%	2.38	0.00	2.38	4.76	5.95	7.14	1.19	3.57	6.54	0.00	0.01	0.03	0.87	0.29	Frag<80[5919]
YPL032C	SVL3	"Protein of unknown function, mutant phenotype suggests a potential role in vacuolar function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck"	Verified	chr16:488885-491362	488885-491362	98.9%	501.07	436.60	381.11	380.70	132.61	147.30	468.84	380.90	139.96	1.73	1.55	0.58	-1.44	-0.46	Frag>80[5920,5921,5922]
YPL031C	PHO85	"Cyclin-dependent kinase, with ten cyclin partners; involved in environmental stress response; in phosphate-rich conditions, Pho85p-Pho80p complex phosphorylates Pho4p which in turn represses PHO5"	Verified	chr16:492016-493035	492016-492916,493019-493035	98.8%	286.73	317.60	281.21	233.79	436.70	328.63	302.16	257.50	382.67	1.12	1.05	1.59	0.57	0.69	Matched[5923]
YPL030W		Putative tRNA U44 2'-O-methyltransferase; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; non-essential gene	Verified	chr16:493541-495244	493541-495244	98.8%	106.95	97.44	90.90	71.89	29.71	14.85	102.19	81.40	22.28	0.38	0.33	0.09	-1.87	-1.52	Matched[5924]
YPL029W	SUV3	"ATP-dependent RNA helicase, component of the mitochondrial degradosome along with the RNase Dss1p; the degradosome associates with the ribosome and mediates turnover of aberrant or unprocessed RNAs"	Verified	chr16:495504-497717	495504-497717	98.8%	60.36	59.45	49.85	45.27	42.07	35.21	59.91	47.56	38.64	0.22	0.19	0.16	-0.30	0.00	Frag>80[5925]
YPL028W	ERG10	"Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase), cytosolic enzyme that transfers an acetyl group from one acetyl-CoA molecule to another, forming acetoacetyl-CoA; involved in the first step in mevalonate biosynthesis"	Verified	chr16:498094-499290	498094-499290	98.6%	1011.58	996.33	1032.76	804.01	722.68	524.43	1003.95	918.38	623.55	3.71	3.73	2.58	-0.56	-0.19	Matched[5926]
YPL027W	SMA1	Protein of unknown function involved in the assembly of the prospore membrane during sporulation	Verified	chr16:499663-500400	499663-500400	98.6%	5.50	2.75	6.87	5.50	5.50	8.25	4.12	6.18	6.87	0.02	0.03	0.03	0.15	0.23	Overlap[5927]
YPL026C	SKS1	Putative serine/threonine protein kinase; involved in the adaptation to low concentrations of glucose independent of the SNF3 regulated pathway	Verified	chr16:500673-502181	500673-502181	98.4%	166.98	199.30	136.68	138.03	34.34	26.26	183.14	137.36	30.30	0.68	0.56	0.13	-2.18	-1.41	Matched[5927]
YPL025C		Hypothetical protein	Dubious	chr16:502471-503028	502471-503028	98.1%	18.27	12.79	12.79	7.31	3.65	21.92	15.53	10.05	12.79	0.06	0.04	0.05	0.35	-0.52	Overlap[5928]
YPL024W	RMI1	Involved in response to DNA damage; null mutants have increased rates of recombination and delayed S phase; interacts physically and genetically with Sgs1p (RecQ family member) and Top3p (topoisomerase III)	Verified	chr16:503515-504240	503515-504240	98.5%	60.14	41.96	64.34	19.58	92.31	54.55	51.05	41.96	73.43	0.19	0.17	0.30	0.81	0.65	Matched[5928]
YPL023C	MET12	"Isozyme of methylenetetrahydrofolate reductase, catalyzes the reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate in the methionine biosynthesis pathway"	Verified	chr16:504337-506310	504337-506310	99.0%	160.12	153.47	173.94	157.56	165.24	145.29	156.80	165.75	155.26	0.58	0.67	0.64	-0.09	0.10	Matched[5929]
YPL022W	RAD1	"Single-stranded DNA endonuclease (with Rad10p), cleaves single-stranded DNA during nucleotide excision repair and double-strand break repair; subunit of Nucleotide Excision Repair Factor 1 (NEF1); homolog of human XPF protein"	Verified	chr16:506695-509997	506695-509997	98.7%	115.97	112.60	103.39	96.03	79.16	68.11	114.29	99.71	73.63	0.42	0.40	0.31	-0.44	0.22	Matched[5930]
YPL021W	ECM23	"Non-essential protein of unconfirmed function; affects pre-rRNA processing, may act as a negative regulator of the transcription of genes involved in pseudohyphal growth; homologous to Srd1p"	Verified	chr16:511099-511662	511099-511662	98.7%	0.00	1.80	0.00	1.80	0.00	1.80	0.90	0.90	0.90	0.00	0.00	0.00	0.00	-0.04	
YPL020C	ULP1	Ubl (ubiquitin-like protein)-specific protease that cleaves Smt3p protein conjugates; specifically required for cell cycle progression; associates with nucleoporins and may interact with septin rings during telophase	Verified	chr16:512311-514176	512311-514176	99.4%	154.71	149.32	146.62	122.91	138.00	94.87	152.01	134.76	116.44	0.56	0.55	0.48	-0.21	-0.09	Frag>80[5931,5932,5933]
YPL019C	VTC3	Vacuolar membrane protein involved in vacuolar polyphosphate accumulation; functions as a regulator of vacuolar H+-ATPase activity and vacuolar transporter chaperones; involved in non-autophagic vacuolar fusion	Verified	chr16:514509-517016	514509-517016	99.2%	1304.73	1007.69	1367.03	1144.35	432.10	299.45	1156.21	1255.69	365.77	4.27	5.10	1.52	-1.78	-1.53	Frag>80[5933,5934]
YPL018W	CTF19	"Outer kinetochore protein, required for accurate mitotic chromosome segregation; component of the kinetochore sub-complex COMA (Ctf19p, Okp1p, Mcm21p, Ame1p) that functions as a platform for kinetochore assembly"	Verified	chr16:517649-518758	517649-518758	98.6%	74.92	150.75	71.27	47.51	220.19	99.59	112.84	59.39	159.89	0.42	0.24	0.66	1.43	-0.12	Frag<80[5935]
YPL017C		Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family; null mutant displays increased levels of spontaneous Rad52 foci	Uncharacterized	chr16:518732-520231	518732-520231	98.8%	99.23	143.11	95.86	83.03	179.56	132.98	121.17	89.44	156.27	0.45	0.36	0.65	0.81	2.03	Matched[5936]
YPL016W	SWI1	"Subunit of the SWI/SNF chromatin remodeling complex, which regulates transcription by remodeling chromosomes; required for transcription of many genes, including ADH1, ADH2, GAL1, HO, INO1 and SUC2"	Verified	chr16:521011-524955	521011-524955	98.3%	82.26	69.88	67.04	43.58	31.20	27.33	76.07	55.31	29.27	0.28	0.22	0.12	-0.92	-0.14	Frag>80[5937,5938]
YPL015C	HST2	Cytoplasmic member of the silencing information regulator 2 (Sir2) family of NAD(+)-dependent protein deacetylases; modulates nucleolar (rDNA) and telomeric silencing; possesses NAD(+)-dependent histone deacetylase activity in vitro	Verified	chr16:525807-526880	525807-526880	98.8%	265.81	235.65	279.00	187.57	364.78	229.05	250.73	233.29	296.91	0.93	0.95	1.23	0.35	0.46	Matched[5939]
YPL014W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and to the nucleus	Uncharacterized	chr16:527544-528689	527544-528689	99.1%	123.30	117.14	120.66	102.17	488.81	353.17	120.22	111.41	420.99	0.44	0.45	1.74	1.92	1.41	Matched[5940]
YPL013C	MRPS16	Mitochondrial ribosomal protein of the small subunit	Verified	chr16:528982-529347	528982-529347	99.4%	728.11	733.60	692.39	626.45	566.00	425.87	730.85	659.42	495.94	2.70	2.68	2.05	-0.41	-0.81	Matched[5941]
YPL012W	RRP12	Protein required for export of the ribosomal subunits; associates with the RNA components of the pre-ribosomes; contains HEAT-repeats	Verified	chr16:529720-533406	529720-533406	98.9%	211.50	89.15	118.51	84.22	11.80	3.84	150.33	101.36	7.82	0.55	0.41	0.03	-3.70	-3.22	Matched[5942]
YPL011C	TAF3	"TFIID subunit (47 kDa), involved in promoter binding and RNA polymerase II transcription initiation"	Verified	chr16:533639-534700	533639-534700	99.2%	119.64	130.09	127.24	83.56	90.21	59.82	124.87	105.40	75.01	0.46	0.43	0.31	-0.49	-0.11	Matched[5943]
YPL010W	RET3	"Zeta subunit of the coatomer complex (COPI), which coats Golgi-derived transport vesicles; involved in retrograde transport between Golgi and ER"	Verified	chr16:535015-535584	535015-535584	98.7%	992.29	1040.31	981.62	933.61	1179.02	768.23	1016.30	957.62	973.62	3.75	3.89	4.03	0.02	-0.60	Matched[5944]
YPL009C		"Protein of unknown function; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YPL009C is not an essential gene"	Verified	chr16:535817-538933	535817-538933	97.0%	351.00	310.64	280.54	270.95	254.40	342.07	330.82	275.74	298.24	1.22	1.12	1.24	0.11	0.55	Matched[5945]
YPL008W	CHL1	"Conserved nuclear protein required to establish sister-chromatid pairing during S-phase, probable DNA helicase with similarity to human BACH1, which associates with tumor suppressor BRCA1; associates with acetyltransferase Ctf7p"	Verified	chr16:539382-541967	539382-541967	98.8%	96.24	104.46	84.11	82.55	52.82	41.86	100.35	83.33	47.34	0.37	0.34	0.20	-0.82	-0.53	Covered/w/another[5946]
YPL007C	TFC8	One of six subunits of RNA polymerase III transcription initiation factor complex (TFIIIC); part of TFIIIC TauB domain that binds BoxB promoter sites of tRNA and other genes; linker between TauB and TauA domains; human homolog is TFIIIC-90	Verified	chr16:542079-543845	542079-543845	99.3%	90.07	107.75	71.26	72.97	86.08	70.69	98.91	72.12	78.39	0.37	0.29	0.32	0.12	0.28	Covered/w/another[5946]
YPL006W	NCR1	"Vacuolar membrane protein that transits through the biosynthetic vacuolar protein sorting pathway, involved in sphingolipid metabolism; glycoprotein and functional orthologue of human Niemann Pick C1 (NPC1) protein"	Verified	chr16:544628-548140	544628-548140	98.9%	123.74	192.81	135.25	130.94	161.73	220.43	158.27	133.09	191.08	0.58	0.54	0.79	0.52	1.01	Frag>80[5947,5948,5949]
YPL005W	AEP3	"Peripheral mitochondrial inner membrane protein, located on the matrix face of the membrane; stabilizes the bicistronic AAP1-ATP6 mRNA encoding subunits 6 and 8 of the ATP synthase complex"	Verified	chr16:548483-550303	548483-550303	98.7%	37.26	34.48	40.60	37.82	89.54	75.08	35.87	39.21	82.31	0.13	0.16	0.34	1.07	0.87	Matched[5950]
YPL004C	LSP1	"Primary component of eisosomes, which are large immobile patch structures at the cell cortex associated with endocytosis, along with Pil1p and Sur7p; null mutants show activation of Pkc1p/Ypk1p stress resistance pathways"	Verified	chr16:550629-551654	550629-551654	99.0%	1757.32	2084.17	2922.96	3080.48	7300.02	5820.33	1920.75	3001.72	6560.18	7.09	12.18	27.18	1.13	0.22	Frag>80[5951,5952,5953]
YPL003W	ULA1	"Protein that acts together with Uba3p to activate Rub1p before its conjugation to proteins (neddylation), which may play a role in protein degradation"	Verified	chr16:552017-553405	552017-553405	98.8%	78.71	95.47	104.94	56.84	274.01	113.69	87.09	80.89	193.85	0.32	0.33	0.80	1.26	0.87	Covered/w/another[5954]
YPL002C	SNF8	"Component of the ESCRT-II complex, which is involved in ubiquitin-dependent sorting of proteins into the endosome; appears to be functionally related to SNF7; involved in glucose derepression"	Verified	chr16:553624-554325	553624-554325	99.3%	120.44	151.99	144.82	110.41	187.84	110.41	136.22	127.61	149.12	0.50	0.52	0.62	0.22	0.26	Covered/w/another[5954]
YPL001W	HAT1	"Catalytic subunit of the Hat1p-Hat2p histone acetyltransferase complex that uses the cofactor acetyl coenzyme A, to acetylate free nuclear and cytoplasmic histone H4; involved in telomeric silencing and DNA double-strand break repair"	Verified	chr16:554602-555726	554602-555726	98.8%	91.79	66.59	101.69	74.69	110.69	65.69	79.19	88.19	88.19	0.29	0.36	0.37	0.00	-0.43	Matched[5955]
YPR001W	CIT3	Dual specificity mitochondrial citrate and methylcitrate synthase; catalyzes the condensation of acetyl-CoA and oxaloacetate to form citrate and that of propionyl-CoA and oxaloacetate to form 2-methylcitrate	Verified	chr16:556374-557834	556374-557834	98.8%	31.19	29.80	27.03	27.03	36.73	25.64	30.49	27.03	31.19	0.11	0.11	0.13	0.21	0.38	Covered/w/another[5956]
YPR002W	PDH1	"Mitochondrial protein that participates in respiration, induced by diauxic shift; homologous to E. coli PrpD, may take part in the conversion of 2-methylcitrate to 2-methylisocitrate"	Verified	chr16:558382-559932	558382-559932	98.7%	23.51	27.43	22.20	18.94	38.53	33.96	25.47	20.57	36.24	0.09	0.08	0.15	0.82	0.54	Covered/w/another[5956]
YPR002C-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the Ty1 long terminal repeat, YPRWdelta12"	Dubious	chr16:560566-560763	560566-560763	2.5%	203.39	0.00	0.00	203.39	203.39	0.00	101.69	101.69	101.69	0.38	0.41	0.42	0.00	0.09	
YPR003C		Putative sulfate permease; physically interacts with Hsp82p; green fluorescent protein (GFP)-fusion protein localizes to the ER; YPR003C is not an essential gene	Uncharacterized	chr16:561501-563765	561501-563765	98.6%	60.01	79.72	69.87	62.70	106.15	63.60	69.87	66.28	84.87	0.26	0.27	0.35	0.36	0.03	Matched[5958]
YPR004C		Protein with homology to mammalian electron transfer flavoprotein complex subunit ETF-alpha; has an FAD binding domain; interacts with yeast frataxin homolog Yfh1p; associates with a large complex containing several dehydrogenases	Verified	chr16:564004-565038	564004-565038	98.9%	552.94	527.54	568.57	549.03	439.61	322.38	540.24	558.80	381.00	1.99	2.27	1.58	-0.55	-0.31	Frag>80[5959,5960,5961]
YPR005C	HAL1	"Cytoplasmic protein involved in halotolerance; decreases intracellular Na+ (via Ena1p) and increases intracellular K+ by decreasing efflux; expression repressed by Ssn6p-Tup1p and Sko1p and induced by NaCl, KCl, and sorbitol through Gcn4p"	Verified	chr16:565784-566668	565784-566668	99.2%	86.61	76.35	76.35	54.70	83.19	55.84	81.48	65.53	69.52	0.30	0.27	0.29	0.09	1.21	Matched[5962]
YPR006C	ICL2	"2-methylisocitrate lyase of the mitochondrial matrix, functions in the methylcitrate cycle to catalyze the conversion of 2-methylisocitrate to succinate and pyruvate; ICL2 transcription is repressed by glucose and induced by ethanol"	Verified	chr16:567266-568993	567266-568993	99.1%	64.25	50.82	51.40	55.49	125.59	72.43	57.54	53.45	99.01	0.21	0.22	0.41	0.89	0.39	Frag<80[5963,5964]
YPR007C	REC8	Meiosis-specific component of sister chromatid cohesion complex; maintains cohesion between sister chromatids during meiosis I; maintains cohesion between centromeres of sister chromatids until meiosis II; homolog of S. pombe Rec8p	Verified	chr16:569333-571375	569333-571375	99.2%	2.96	5.43	1.97	0.99	5.92	3.95	4.19	1.48	4.93	0.02	0.01	0.02	1.74	0.51	
YPR008W	HAA1	"Transcriptional activator involved in the transcription of TPO2, HSP30 and other genes encoding membrane stress proteins; despite sequence similarity with the transcription factor Ace1p, it is not subject to metalloregulation"	Verified	chr16:573015-575099	573015-575099	98.8%	196.57	220.84	186.38	199.48	313.54	301.89	208.70	192.93	307.72	0.77	0.78	1.27	0.67	1.18	Matched[5965]
YPR009W	SUT2	Putative transcription factor; multicopy suppressor of mutations that cause low activity of the cAMP/protein kinase A pathway; highly similar to Sut1p	Verified	chr16:576549-577355	576549-577355	98.9%	175.37	190.40	155.32	130.27	217.95	131.52	182.88	142.80	174.74	0.68	0.58	0.72	0.29	0.24	Matched[5966]
YPR010C	RPA135	RNA polymerase I subunit A135	Verified	chr16:577582-581193	577582-581193	98.9%	422.36	240.71	230.63	166.26	19.87	9.24	331.53	198.44	14.55	1.22	0.81	0.06	-3.77	-3.28	Matched[5967]
YPR010C-A		Putative protein of unknown function; conserved among Saccharomyces sensu stricto species	Uncharacterized	chr16:582370-582731	582370-582555,582699-582731	99.4%	243.44	293.97	390.43	560.38	748.71	417.99	268.71	475.41	583.35	0.99	1.93	2.42	0.30	NaN	Frag>80[5968,5969]
YPR011C		"Putative transporter, member of the mitochondrial carrier family; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Uncharacterized	chr16:583059-584039	583059-584039	99.1%	127.57	133.74	132.72	135.80	177.98	125.51	130.66	134.26	151.75	0.48	0.54	0.63	0.18	0.27	Covered/w/another[5970]
YPR012W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; YPR012W is not an essential gene"	Dubious	chr16:584306-584560	584306-584560	99.5%	82.80	118.28	59.14	27.60	67.03	15.77	100.54	43.37	41.40	0.37	0.18	0.17	-0.07	-0.49	Covered/w/another[5970]
YPR013C		Putative zinc finger protein; YPR013C is not an essential gene	Uncharacterized	chr16:584629-585582	584629-585582	98.8%	95.46	156.97	81.67	68.94	114.55	94.40	126.22	75.30	104.47	0.47	0.31	0.43	0.47	0.90	Covered/w/another[5970]
YPR014C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; YPR014C is not an essential gene"	Dubious	chr16:587186-587515	587186-587515	98.5%	67.71	58.48	58.48	46.17	89.25	15.39	63.09	52.32	52.32	0.23	0.21	0.22	0.00	-0.15	Matched[5971]
YPR015C		Putative protein of unknown function	Uncharacterized	chr16:590280-591023	590280-591023	98.5%	12.28	62.78	19.11	9.55	46.40	28.66	37.53	14.33	37.53	0.14	0.06	0.16	1.39	1.80	Matched[5972]
YPR016C	TIF6	"Constituent of 66S pre-ribosomal particles, has similarity to human translation initiation factor 6 (eIF6); may be involved in the biogenesis and or stability of 60S ribosomal subunits"	Verified	chr16:592329-593066	592329-593066	98.9%	843.74	676.64	667.05	610.89	236.96	160.26	760.19	638.97	198.61	2.81	2.59	0.82	-1.69	-1.39	Matched[5974]
YPR016W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr16:593093-593353	593093-593353	99.0%	181.85	158.63	158.63	147.03	19.35	34.82	170.24	152.83	27.08	0.63	0.62	0.11	-2.50	-0.01	Frag<80[5975]
YPR017C	DSS4	"Nucleotide release factor functioning in the post-Golgi secretory pathway, required for ER-to-Golgi transport, binds zinc, found both on membranes and in the cytosol; guanine nucleotide dissociation stimulator"	Verified	chr16:593483-593914	593483-593914	99.2%	240.26	247.25	216.93	191.27	58.31	65.31	243.76	204.10	61.81	0.90	0.83	0.26	-1.72	-1.44	Matched[5975]
YPR018W	RLF2	Largest subunit (p90) of the Chromatin Assembly Complex (CAF-1) with Cac2p and Msi1p that assembles newly synthesized histones onto recently replicated DNA; involved in the maintenance of transcriptionally silent chromatin	Verified	chr16:594473-596293	594473-596293	98.3%	142.99	126.79	107.24	94.95	58.65	35.75	134.89	101.10	47.20	0.50	0.41	0.20	-1.10	-0.81	Covered/w/another[5976]
YPR019W	MCM4	Essential helicase component of heterohexameric MCM2-7 complexes which bind pre-replication complexes on DNA and melt the DNA prior to replication; accumulates in the nucleus in G1; homolog of S. pombe Cdc21p	Verified	chr16:596747-599548	596747-599548	98.7%	124.69	116.38	114.93	93.61	95.05	112.40	120.53	104.27	103.73	0.44	0.42	0.43	-0.01	0.63	Covered/w/another[5976]
YPR020W	ATP20	Subunit g of the mitochondrial F1F0 ATP synthase; reversibly phosphorylated on two residues; unphosphorylated form is required for dimerization of the ATP synthase complex	Verified	chr16:599867-600214	599867-600214	99.0%	507.74	458.41	522.24	617.99	667.31	513.54	483.08	570.12	590.43	1.78	2.31	2.45	0.05	-0.62	Matched[5977]
YPR021C	AGC1	"Mitochondrial amino acid transporter, acts both as a glutamate uniporter and as an aspartate-glutamate exchanger; involved in nitrogen metabolism and nitrogen compound biosynthesis"	Verified	chr16:600646-603354	600646-603354	99.2%	121.28	158.49	113.84	105.66	108.63	83.71	139.89	109.75	96.17	0.52	0.45	0.40	-0.19	0.14	Matched[5978]
YPR022C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus and is induced in response to the DNA-damaging agent MMS	Uncharacterized	chr16:603908-607309	603908-607309	98.6%	100.76	93.01	82.27	69.75	32.79	42.33	96.88	76.01	37.56	0.36	0.31	0.16	-1.02	-0.44	Covered[5979]
YPR023C	EAF3	"Esa1p-associated factor, nonessential component of the NuA4 acetyltransferase complex, homologous to Drosophila dosage compensation protein MSL3"	Verified	chr16:608823-610028	608823-610028	99.0%	275.44	293.02	293.86	254.51	325.67	257.86	284.23	274.18	291.76	1.05	1.11	1.21	0.09	0.25	Frag>80[5980,5981]
YPR024W	YME1	"Subunit, with Mgr1p, of the mitochondrial inner membrane i-AAA protease complex, which is responsible for degradation of unfolded or misfolded mitochondrial gene products; mutation causes an elevated rate of mitochondrial turnover"	Verified	chr16:610478-612721	610478-612721	98.6%	196.17	173.57	222.83	202.04	307.36	298.77	184.87	212.44	303.06	0.68	0.86	1.26	0.51	1.50	Matched[5982]
YPR025C	CCL1	"Cyclin associated with protein kinase Kin28p, which is the TFIIH-associated carboxy-terminal domain (CTD) kinase involved in transcription initiation at RNA polymerase II promoters"	Verified	chr16:613374-614555	613374-614555	99.2%	167.14	192.72	169.70	144.12	227.69	133.03	179.93	156.91	180.36	0.66	0.64	0.75	0.20	-0.09	Matched[5983]
YPR026W	ATH1	Acid trehalase required for utilization of extracellular trehalose	Verified	chr16:615376-619011	615376-619011	98.9%	35.32	55.63	54.52	47.84	157.43	179.40	45.48	51.18	168.41	0.17	0.21	0.70	1.72	2.13	Matched[5985]
YPR027C		Putative protein of unknown function	Uncharacterized	chr16:620422-621255	620422-621255	99.1%	112.57	123.47	99.26	119.84	105.31	71.42	118.02	109.55	88.36	0.44	0.44	0.37	-0.31	-0.05	Matched[5987]
YPR028W	YOP1	Membrane protein that interacts with Yip1p to mediate membrane traffic; overexpression results in cell death and accumulation of internal cell membranes; regulates vesicular traffic in stressed cells	Verified	chr16:623524-624199	623524-623574,623708-624199	99.1%	2106.83	2495.12	2222.02	2233.16	5228.05	3195.54	2300.98	2227.59	4211.80	8.49	9.04	17.45	0.92	0.28	Matched[5990]
YPR029C	APL4	"Gamma-adaptin, large subunit of the clathrin-associated protein (AP-1) complex; binds clathrin; involved in vesicle mediated transport"	Verified	chr16:624466-626964	624466-626964	99.2%	187.61	178.33	165.83	177.53	155.74	139.60	182.97	171.68	147.67	0.68	0.70	0.61	-0.22	0.01	Matched[5991]
YPR030W	CSR2	Nuclear protein with a potential regulatory role in utilization of galactose and nonfermentable carbon sources; overproduction suppresses the lethality at high temperature of a chs5 spa2 double null mutation; potential Cdc28p substrate	Verified	chr16:627877-631242	627877-631242	98.9%	14.42	20.12	23.73	30.64	54.36	42.05	17.27	27.18	48.21	0.06	0.11	0.20	0.83	1.26	Frag>80[5992,5993]
YPR031W	NTO1	Subunit of the NuA3 histone acetyltransferase complex that acetylates histone H3; contains PHD finger domain that interacts with methylated histone H3	Verified	chr16:631512-633758	631512-633758	98.8%	69.84	68.04	48.66	41.90	37.85	22.08	68.94	45.28	29.96	0.25	0.18	0.12	-0.60	-0.70	Matched[5994]
YPR032W	SRO7	"Putative effector of Rab GTPase Sec4p, forms a complex with Sec4p and t-SNARE Sec9p; involved in exocytosis and docking and fusion of post-Golgi vesicles with plasma membrane; homolog of Sro77p and Drosophila lgl tumor suppressor"	Verified	chr16:634120-637221	634120-637221	98.8%	63.63	52.54	55.48	60.37	53.19	59.07	58.09	57.92	56.13	0.21	0.24	0.23	-0.05	0.55	Matched[5995]
YPR033C	HTS1	Cytoplasmic and mitochondrial histidine tRNA synthetase; encoded by a single nuclear gene that specifies two messages; efficient mitochondrial localization requires both a presequence and an amino-terminal sequence	Verified	chr16:637376-639016	637376-639016	99.0%	818.42	683.04	749.50	732.27	236.91	255.99	750.73	740.89	246.45	2.77	3.01	1.02	-1.59	-1.14	Matched[5996]
YPR034W	ARP7	Component of both the SWI/SNF and RSC chromatin remodeling complexes; actin-related protein involved in transcriptional regulation	Verified	chr16:639522-640955	639522-640955	98.4%	209.85	203.47	218.36	169.44	144.63	135.41	206.66	193.90	140.02	0.76	0.79	0.58	-0.47	-0.04	Matched[5997]
YPR035W	GLN1	"Glutamine synthetase (GS), synthesizes glutamine from glutamate and ammonia; with Glt1p, forms the secondary pathway for glutamate biosynthesis from ammonia; expression regulated by nitrogen source and by amino acid limitation"	Verified	chr16:642205-643317	642205-643317	98.6%	8169.48	8533.94	8511.16	7839.64	1129.84	593.17	8351.71	8175.40	861.50	30.83	33.19	3.57	-3.25	-5.00	Matched[5999]
YPR036W	VMA13	"Subunit H of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; serves as an activator or a structural stabilizer of the V-ATPase"	Verified	chr16:643833-645269	643833-645269	98.5%	1360.80	1755.55	1293.00	1398.93	1428.59	1389.75	1558.17	1345.97	1409.17	5.75	5.46	5.84	0.07	0.59	Frag>80[6000,6001,6002]
YPR036W-A		Protein of unknown function; transcription is regulated by Pdr1p	Verified	chr16:645947-646150	645947-646150	99.1%	2779.88	5980.21	3160.76	2285.24	11258.04	7221.76	4380.05	2723.00	9239.90	16.17	11.05	38.28	1.76	NaN	Matched[6003]
YPR038W		Hypothetical protein; null mutant displays increased levels of spontaneous Rad52 foci	Dubious	chr16:646833-647192	646833-647192	99.3%	327.20	271.27	313.21	299.23	137.03	89.49	299.23	306.22	113.26	1.10	1.24	0.47	-1.43	-0.11	Frag<80[6004]
YPR039W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified non essential genes ERV2/YPR037C and TIP41/YPR040W"	Dubious	chr16:647009-647344	647009-647344	99.4%	104.80	125.76	122.77	77.85	74.86	47.91	115.28	100.31	61.38	0.43	0.41	0.25	-0.71	-0.49	Covered/w/another[6005]
YPR037C	ERV2	"Flavin-linked sulfhydryl oxidase localized to the endoplasmic reticulum lumen, involved in disulfide bond formation within the ER"	Verified	chr16:646445-647035	646445-647035	98.8%	487.87	417.69	412.55	445.08	237.95	164.34	452.78	428.82	201.14	1.67	1.74	0.83	-1.09	-0.63	Matched[6004]
YPR040W	TIP41	"Protein that interacts physically and genetically with Tap42p, which regulates protein phosphatase 2A; component of the TOR (target of rapamycin) signaling pathway"	Verified	chr16:647302-648372	647302-648372	98.7%	127.74	128.68	109.76	100.30	101.24	94.62	128.21	105.03	97.93	0.47	0.43	0.41	-0.10	0.31	Frag>80[6005]
YPR041W	TIF5	Translation initiation factor eIF-5; N-terminal domain functions as a GTPase-activating protein to mediate hydrolysis of ribosome-bound GTP; C-terminal domain is the core of ribosomal preinitiation complex formation	Verified	chr16:648701-649918	648701-649918	98.6%	975.89	650.31	906.78	747.74	233.98	143.22	813.10	827.26	188.60	3.00	3.36	0.78	-2.13	-1.92	Matched[6006]
YPR042C	PUF2	"Member of the PUF protein family, which is defined by the presence of Pumilio homology domains that confer RNA binding activity; preferentially binds mRNAs encoding membrane-associated proteins"	Verified	chr16:650432-653659	650432-653659	96.6%	86.87	90.40	75.97	82.38	133.67	173.10	88.63	79.18	153.38	0.33	0.32	0.64	0.95	1.46	Frag>80[6007]
YPR043W	RPL43A	"Protein component of the large (60S) ribosomal subunit, identical to Rpl43Bp and has similarity to rat L37a ribosomal protein; null mutation confers a dominant lethal phenotype"	Verified	chr16:654163-654844	654163-654164,654568-654844	85.4%	9863.59	8163.69	9066.11	7743.97	2980.06	2102.83	9013.64	8405.04	2541.45	33.27	34.12	10.53	-1.73	-2.15	Matched[6008]
YPR044C	OPI11	"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified gene RPL43A/YPR043W; deletion confers sensitivity to GSAO"	Dubious	chr16:654521-654874	654521-654874	88.2%	8180.44	6751.90	7389.30	6389.96	2405.45	1732.82	7466.17	6889.63	2069.13	27.56	27.97	8.57	-1.74	-1.21	Matched[6008]
YPR045C		Deletion mutant is synthetically lethal with MEN mutants	Uncharacterized	chr16:655137-656549	655137-656549	99.2%	179.10	190.52	158.41	166.97	295.41	226.19	184.81	162.69	260.80	0.68	0.66	1.08	0.68	0.39	Frag>80[6009,6010]
YPR046W	MCM16	Protein involved in kinetochore-microtubule mediated chromosome segregation; binds to centromere DNA	Verified	chr16:656796-657341	656796-657341	98.8%	85.25	48.19	64.86	53.75	85.25	59.31	66.72	59.31	72.28	0.25	0.24	0.30	0.29	-0.15	Covered/w/another[6011]
YPR047W	MSF1	"Mitochondrial phenylalanyl-tRNA synthetase alpha subunit, active as a monomer, unlike the cytoplasmic subunit which is active as a dimer complexed to a beta subunit dimer; similar to the alpha subunit of E. coli phenylalanyl-tRNA synthetase"	Verified	chr16:657526-658935	657526-658935	98.7%	108.48	163.80	138.66	148.72	226.31	168.83	136.14	143.69	197.57	0.50	0.58	0.82	0.46	0.56	Matched[6011]
YPR048W	TAH18	"Protein with a potential role in DNA replication; displays synthetic lethal genetic interaction with the pol3-13 allele of POL3, which encodes DNA polymerase delta"	Verified	chr16:659179-661050	659179-661050	98.7%	69.78	56.80	65.46	47.06	18.93	13.52	63.29	56.26	16.23	0.23	0.23	0.07	-1.79	-1.09	Covered/w/another[6012]
YPR049C	ATG11	Peripheral membrane protein required for delivery of aminopeptidase I (Lap4p) to the vacuole in the cytoplasm-to-vacuole targeting pathway; also required for peroxisomal degradation (pexophagy)	Verified	chr16:661134-664670	661134-664670	99.2%	38.75	40.46	28.20	22.79	41.88	32.19	39.60	25.50	37.04	0.15	0.10	0.15	0.54	0.72	Covered/w/another[6012]
YPR051W	MAK3	Catalytic subunit of N-terminal acetyltransferase of the NatC type; required for replication of dsRNA virus	Verified	chr16:664957-665487	664957-665487	98.4%	354.21	298.68	310.17	181.89	269.96	97.65	326.45	246.03	183.81	1.21	1.00	0.76	-0.42	-1.09	Matched[6013]
YPR050C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene MAK3/YPR051W"	Dubious	chr16:664950-665363	664950-665363	98.4%	368.17	260.18	314.17	171.81	267.54	78.54	314.17	242.99	173.04	1.16	0.99	0.72	-0.49	-0.21	Matched[6013]
YPR052C	NHP6A	"High-mobility group non-histone chromatin protein, functionally redundant with Nhp6Bp; homologous to mammalian high mobility group proteins 1 and 2; acts to recruit transcription factor Rcs1p to certain promoters"	Verified	chr16:665690-665971	665690-665971	99.0%	2368.82	2039.12	2221.89	2024.79	1928.03	971.18	2203.97	2123.34	1449.60	8.14	8.62	6.01	-0.55	-0.81	Matched[6014]
YPR053C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified gene NHP6A/YPR052C"	Dubious	chr16:665785-666240	665785-666240	98.5%	1182.08	957.24	1117.52	950.56	912.72	494.20	1069.66	1034.04	703.46	3.95	4.20	2.91	-0.56	0.66	Frag<80[6014]
YPR054W	SMK1	Middle sporulation-specific mitogen-activated protein kinase (MAPK) required for production of the outer spore wall layers; negatively regulates activity of the glucan synthase subunit Gsc2p	Verified	chr16:666277-667443	666277-667443	98.8%	80.70	96.32	80.70	67.68	137.97	101.52	88.51	74.19	119.74	0.33	0.30	0.50	0.69	0.09	Matched[6015]
YPR055W	SEC8	"Essential 121kDa subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, and Exo84p), which has the essential function of mediating polarized targeting of secretory vesicles to active sites of exocytosis"	Verified	chr16:667673-670870	667673-670870	99.1%	92.47	97.52	92.47	82.37	112.99	126.24	95.00	87.42	119.62	0.35	0.35	0.50	0.45	0.90	Matched[6016]
YPR056W	TFB4	"Subunit of TFIIH complex, involved in transcription initiation, similar to 34 kDa subunit of human TFIIH; interacts with Ssl1p"	Verified	chr16:671123-672139	671123-672139	98.7%	183.22	181.23	168.28	132.44	146.38	53.77	182.23	150.36	100.07	0.67	0.61	0.41	-0.59	-1.41	Covered/w/another[6017]
YPR057W	BRR1	"snRNP protein component of spliceosomal snRNPs, required for pre-mRNA splicing and snRNP biogenesis; in null mutant newly-synthesized snRNAs are destabilized and 3'-end processing is slowed"	Verified	chr16:672468-673493	672468-673493	98.6%	168.07	207.61	135.44	127.53	101.83	65.25	187.84	131.49	83.54	0.69	0.53	0.35	-0.65	-0.47	Covered/w/another[6017]
YPR058W	YMC1	"Mitochondrial protein, putative inner membrane transporter with a role in oleate metabolism and glutamate biosynthesis; member of the mitochondrial carrier (MCF) family; has similarity with Ymc2p"	Verified	chr16:673748-674671	673748-674671	98.7%	172.11	195.13	169.92	138.13	61.39	35.08	183.62	154.02	48.23	0.68	0.63	0.20	-1.67	-1.24	Matched[6018]
YPR059C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YMC1/YPR058W"	Dubious	chr16:674311-674697	674311-674697	98.9%	232.43	198.48	198.48	190.64	80.96	57.45	215.45	194.56	69.21	0.80	0.79	0.29	-1.49	-0.96	Matched[6018]
YPR060C	ARO7	"Chorismate mutase, catalyzes the conversion of chorismate to prephenate to initiate the tyrosine/phenylalanine-specific branch of aromatic amino acid biosynthesis"	Verified	chr16:674858-675628	674858-675628	99.0%	286.77	206.90	257.97	208.21	179.40	167.61	246.84	233.09	173.51	0.91	0.95	0.72	-0.43	-0.07	Matched[6019]
YPR061C	JID1	"Probable Hsp40p co-chaperone, has a DnaJ-like domain and appears to be involved in ER-associated degradation of misfolded proteins containing a tightly folded cytoplasmic domain; inhibits replication of Brome mosaic virus in S. cerevisiae"	Verified	chr16:675974-676879	675974-676879	99.2%	37.84	34.50	32.28	31.16	70.12	60.10	36.17	31.72	65.11	0.13	0.13	0.27	1.04	0.67	Matched[6020]
YPR062W	FCY1	"Cytosine deaminase, zinc metalloenzyme that catalyzes the hydrolytic deamination of cytosine to uracil; of biomedical interest because it also catalyzes the deamination of 5-fluorocytosine (5FC) to form anticancer drug 5-fluorouracil (5FU)"	Verified	chr16:677162-677638	677162-677638	98.3%	1433.85	1158.61	1175.68	1173.54	1147.94	940.97	1296.23	1174.61	1044.45	4.78	4.77	4.33	-0.17	-0.10	Matched[6021]
YPR063C		ER-localized protein of unknown function	Uncharacterized	chr16:677809-678317	677809-678190,678277-678317	98.4%	689.35	747.00	742.19	617.29	720.58	542.83	718.17	679.74	631.71	2.65	2.76	2.62	-0.11	-0.13	Covered/w/another[6022]
YPR064W		"Dubious open reading frame, unlikely to encode a functional protein; based on available experimental and comparative sequence data"	Dubious	chr16:678948-679367	678948-679367	98.5%	12.09	14.50	7.25	4.83	24.17	33.84	13.29	6.04	29.01	0.05	0.02	0.12	2.26	-0.14	Covered/w/another[6022]
YPR065W	ROX1	Heme-dependent repressor of hypoxic genes; contains an HMG domain that is responsible for DNA bending activity	Verified	chr16:679690-680796	679690-680796	98.9%	313.40	255.83	334.41	370.96	198.27	211.06	284.62	352.69	204.67	1.05	1.43	0.85	-0.79	-0.26	Covered/w/another[6022]
YPR066W	UBA3	"Protein that acts together with Ula1p to activate Rub1p before its conjugation to proteins (neddylation), which may play a role in protein degradation; GFP-fusion protein localizes to the cytoplasm in a punctate pattern"	Verified	chr16:681210-682109	681210-682109	98.8%	55.12	78.74	46.12	51.74	95.61	70.86	66.93	48.93	83.24	0.25	0.20	0.34	0.77	0.78	Covered/w/another[6022]
YPR067W	ISA2	"Protein required for maturation of mitochondrial and cytosolic Fe/S proteins, localizes to the mitochondrial intermembrane space, overexpression of ISA2 suppresses grx5 mutations"	Verified	chr16:682217-682774	682217-682774	98.9%	186.65	270.01	230.14	242.83	255.51	193.90	228.33	236.48	224.71	0.84	0.96	0.93	-0.07	0.25	Covered/w/another[6022]
YPR068C	HOS1	"Putative class I histone deacetylase (HDAC) with sequence similarity to Hda1p, Rpd3p, Hos2p, and Hos3p; deletion results in increased histone acetylation at rDNA repeats; interacts with the Tup1p-Ssn6p corepressor complex"	Verified	chr16:682938-684350	682938-684350	99.2%	62.79	59.22	55.65	47.80	46.38	29.25	61.00	51.73	37.82	0.23	0.21	0.16	-0.45	-0.77	Covered/w/another[6022]
YPR069C	SPE3	"Spermidine synthase, involved in biosynthesis of spermidine and also in biosynthesis of pantothenic acid; spermidine is required for growth of wild-type cells"	Verified	chr16:684553-685434	684553-685434	99.0%	830.11	607.99	776.30	704.16	782.02	659.51	719.05	740.23	720.77	2.65	3.00	2.99	-0.04	0.33	Matched[6023]
YPR070W	MED1	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation	Verified	chr16:685895-687595	685895-687595	99.0%	127.70	132.45	103.94	98.59	84.34	73.65	130.07	101.27	78.99	0.48	0.41	0.33	-0.36	-0.21	Matched[6024]
YPR071W		Putative membrane protein; YPR071W is not an essential gene	Uncharacterized	chr16:688169-688804	688169-688804	98.6%	122.74	146.65	132.31	97.24	119.55	102.02	134.70	114.77	110.79	0.50	0.47	0.46	-0.05	0.18	Matched[6025]
YPR072W	NOT5	"Subunit of the CCR4-NOT complex, which is a global transcriptional regulator with roles in transcription initiation and elongation and in mRNA degradation"	Verified	chr16:690104-691786	690104-691786	98.7%	355.06	318.35	332.79	321.36	391.16	293.67	336.70	327.07	342.42	1.24	1.33	1.42	0.07	0.62	Covered/w/another[6026]
YPR073C	LTP1	Protein phosphotyrosine phosphatase of unknown cellular role; activated by adenine	Verified	chr16:691930-692415	691930-692415	99.4%	480.25	459.55	471.97	397.45	894.26	494.74	469.90	434.71	694.50	1.73	1.76	2.88	0.68	0.09	Covered/w/another[6026]
YPR074C	TKL1	"Transketolase, similar to Tkl2p; catalyzes conversion of xylulose-5-phosphate and ribose-5-phosphate to sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate in the pentose phosphate pathway; needed for synthesis of aromatic amino acids"	Verified	chr16:692793-694835	692793-694835	98.7%	1976.68	1495.41	2016.87	1847.18	745.22	1002.73	1736.05	1932.03	873.98	6.41	7.84	3.62	-1.14	-0.79	Covered/w/another[6026]
YPR074W-A		Hypothetical protein identified by homology	Dubious	chr16:695015-695185	695015-695185	98.1%	0.00	5.96	0.00	0.00	0.00	0.00	2.98	0.00	0.00	0.01	0.00	0.00	NaN	0.09	
YPR076W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr16:696473-696847	696473-696847	98.7%	175.68	197.30	213.51	156.76	216.22	235.14	186.49	185.14	225.68	0.69	0.75	0.94	0.29	0.36	Matched[6028]
YPR075C	OPY2	Integral membrane protein that functions in the signaling branch of the high-osmolarity glycerol (HOG) pathway; interacts with Ste50p; overproduction blocks cell cycle arrest in the presence of mating pheromone	Verified	chr16:695734-696816	695734-696816	99.0%	256.56	262.16	269.62	239.77	300.41	304.14	259.36	254.69	302.27	0.96	1.03	1.25	0.25	0.61	Matched[6028]
YPR077C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data; expression increased by deletion of NAP1"	Dubious	chr16:697128-697499	697128-697499	99.0%	8.15	10.87	5.43	2.72	21.73	40.75	9.51	4.07	31.24	0.04	0.02	0.13	2.94	1.40	Covered/w/another[6029]
YPR078C		Putative protein of unknown function; possible role in DNA metabolism and/or in genome stability; expression is heat-inducible	Uncharacterized	chr16:697144-698262	697144-698262	99.2%	14.42	21.63	11.72	7.21	21.63	41.46	18.02	9.46	31.54	0.07	0.04	0.13	1.74	1.06	Matched[6029]
YPR079W	MRL1	"Membrane protein with similarity to mammalian mannose-6-phosphate receptors, possibly functions as a sorting receptor in the delivery of vacuolar hydrolases"	Verified	chr16:698867-700012	698867-700012	98.7%	104.36	107.02	117.63	93.75	304.25	220.22	105.69	105.69	262.23	0.39	0.43	1.09	1.31	1.55	Matched[6030]
YPR080W	TEF1	Translational elongation factor EF-1 alpha; also encoded by TEF2; functions in the binding reaction of aminoacyl-tRNA (AA-tRNA) to ribosomes	Verified	chr16:700592-701968	700592-701968	2.6%	13674.74	9605.54	11128.03	9162.63	4346.02	2740.48	11640.14	10145.33	3543.25	42.97	41.18	14.68	-1.52	-1.90	Frag<80[6031,6032,6033]
YPR081C	GRS2	"Protein with sequence similarity to Grs1p, which is a glycyl-tRNA synthetase; cannot substitute for Grs1p; possible pseudogene that is expressed at very low levels"	Verified	chr16:702112-703968	702112-703968	99.2%	73.26	112.34	79.23	80.86	137.30	129.70	92.80	80.05	133.50	0.34	0.32	0.55	0.74	0.29	Frag>80[6032,6033,6034,6035]
YPR082C	DIB1	"17-kDa component of the U4/U6aU5 tri-snRNP, plays an essential role in pre-mRNA splicing, orthologue of hDIM1, the human U5-specific 15-kDa protein"	Verified	chr16:704223-704654	704223-704654	99.3%	249.34	261.00	202.74	230.70	167.78	153.80	255.17	216.72	160.79	0.94	0.88	0.67	-0.43	-0.53	Matched[6035]
YPR083W	MDM36	Protein required for normal mitochondrial morphology and inheritance	Verified	chr16:704852-706591	704852-706591	98.9%	42.44	43.60	43.60	42.44	36.63	30.81	43.02	43.02	33.72	0.16	0.17	0.14	-0.35	0.17	Matched[6036]
YPR084W		Putative protein of unknown function	Uncharacterized	chr16:706970-708340	706970-708340	98.8%	93.72	108.48	91.51	81.92	92.99	67.16	101.10	86.71	80.07	0.37	0.35	0.33	-0.11	0.34	Covered/w/another[6037]
YPR085C		Putative protein of unknown function; YPR085C is an essential gene	Uncharacterized	chr16:708495-709826	708495-709826	99.3%	95.23	92.96	55.17	49.88	95.23	47.62	94.10	52.53	71.42	0.35	0.21	0.30	0.44	0.30	Covered/w/another[6037]
YPR086W	SUA7	"Transcription factor TFIIB, a general transcription factor required for transcription initiation and start site selection by RNA polymerase II"	Verified	chr16:710099-711136	710099-711136	98.5%	355.87	358.81	335.34	293.30	256.15	237.58	357.34	314.32	246.86	1.32	1.28	1.02	-0.35	-0.06	Matched[6038]
YPR087W	VPS69	"Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; 85% of ORF overlaps the verified gene SRP54; deletion causes a vacuolar protein sorting defect"	Dubious	chr16:711352-711672	711352-711672	99.3%	768.93	552.37	649.67	621.42	477.05	395.45	660.65	635.54	436.25	2.44	2.58	1.81	-0.54	-0.61	Covered/w/another[6039]
YPR088C	SRP54	"Signal recognition particle (SRP) subunit (homolog of mammalian SRP54); contains the signal sequence-binding activity of SRP, interacts with the SRP RNA, and mediates binding of SRP to signal receptor; contains GTPase domain"	Verified	chr16:711401-713026	711401-713026	99.3%	515.37	457.14	472.63	459.62	306.62	292.99	486.26	466.12	299.81	1.79	1.89	1.24	-0.64	-0.18	Matched[6039]
YPR089W		Protein of unknown function; exhibits genetic interaction with ERG11 and protein-protein interaction with Hsp82p	Uncharacterized	chr16:713273-715939	713273-715939	98.9%	172.46	133.80	155.79	131.91	95.52	91.73	153.13	143.85	93.62	0.57	0.58	0.39	-0.62	0.24	Matched[6040]
YPR092W		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr16:718377-718682	718377-718682	98.6%	56.35	53.03	36.46	39.77	33.14	59.66	54.69	38.12	46.40	0.20	0.15	0.19	0.28	0.75	Covered/w/another[6041]
YPR091C		"Putative protein of unknown function; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; YPR091C is not an essential gene"	Verified	chr16:716154-718466	716154-718466	99.1%	136.56	175.39	175.39	170.15	255.67	236.47	155.97	172.77	246.07	0.58	0.70	1.02	0.51	0.92	Matched[6041]
YPR093C	ASR1	Protein involved in a putative alcohol-responsive signaling pathway; accumulates in the nucleus under alcohol stress; contains a Ring/PHD finger domain	Verified	chr16:719556-720422	719556-720422	99.1%	46.57	57.04	46.57	51.22	146.68	101.28	51.80	48.89	123.98	0.19	0.20	0.51	1.34	1.47	Covered/w/another[6043]
YPR094W	RDS3	Zinc cluster protein involved in pre-mRNA splicing and cycloheximide resistance	Verified	chr16:720635-720958	720635-720958	98.5%	103.45	122.26	128.53	84.64	313.48	150.47	112.85	106.58	231.97	0.42	0.43	0.96	1.12	0.39	Covered/w/another[6043]
YPR095C	SYT1	Guanine nucleotide exchange factor (GEF) for Arf proteins; involved in vesicular transport; suppressor of ypt3 mutations; member of the Sec7-domain family	Verified	chr16:721035-724715	721035-724715	99.1%	71.00	83.89	66.62	61.13	52.09	60.31	77.44	63.87	56.20	0.29	0.26	0.23	-0.18	-0.28	Covered/w/another[6043]
YPR096C		"Protein of unknown function that may interact with ribosomes, based on co-purification experiments"	Verified	chr16:724840-725142	724840-725142	98.9%	16.69	10.01	23.36	16.69	6.67	0.00	13.35	20.02	3.34	0.05	0.08	0.01	-2.58	0.07	
YPR097W		"Protein that contains a Phox homology (PX) domain and binds phosphoinositides; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies"	Verified	chr16:725392-728613	725392-728613	98.8%	133.81	106.49	118.42	103.03	121.88	95.18	120.15	110.73	108.53	0.44	0.45	0.45	-0.03	0.21	Matched[6044]
YPR098C		"Protein of unknown function, localized to the mitochondrial outer membrane"	Verified	chr16:728945-729526	728945-729383,729480-729526	98.9%	395.28	461.86	445.21	453.54	971.57	634.54	428.57	449.38	803.05	1.58	1.82	3.33	0.84	0.21	Matched[6045]
YPR100W	MRPL51	Mitochondrial ribosomal protein of the large subunit	Verified	chr16:729789-730211	729789-730211	98.3%	716.56	656.45	591.52	598.74	868.05	625.19	686.50	595.13	746.62	2.53	2.42	3.09	0.33	-0.17	Matched[6046]
YPR099C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene MRPL51/YPR100W"	Dubious	chr16:729755-730111	729755-730111	98.3%	740.92	606.98	587.03	646.88	812.16	618.38	673.95	616.96	715.27	2.49	2.50	2.96	0.21	-0.04	Matched[6046]
YPR101W	SNT309	"Component of NineTeen complex (NTC) containing Prp19p involved in mRNA splicing, interacts physically and genetically with Prp19p"	Verified	chr16:730490-731017	730490-731017	98.6%	140.18	203.55	176.67	147.86	186.27	151.70	171.87	162.27	168.99	0.63	0.66	0.70	0.06	-0.35	Matched[6047]
YPR102C	RPL11A	"Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl11Bp; involved in ribosomal assembly; depletion causes degradation of proteins and RNA of the 60S subunit; has similarity to E. coli L5 and rat L11"	Verified	chr16:731222-731746	731222-731746	23.9%	7020.90	5460.70	6256.72	5357.21	1321.39	1209.95	6240.80	5806.97	1265.67	23.04	23.57	5.24	-2.20	-3.59	Frag<80[6048,6049]
YPR103W	PRE2	"20S proteasome beta-type subunit, responsible for the chymotryptic activity of the proteasome"	Verified	chr16:732347-733210	732347-733210	98.8%	919.92	754.69	922.27	880.08	1451.95	991.41	837.30	901.17	1221.68	3.09	3.66	5.06	0.44	0.40	Matched[6050]
YPR104C	FHL1	Transcriptional activator with similarity to DNA-binding domain of Drosophila forkhead but unable to bind DNA in vitro; required for rRNA processing; isolated as a suppressor of splicing factor prp4	Verified	chr16:733621-736431	733621-736431	99.2%	138.39	108.64	86.05	81.03	49.12	43.74	123.52	83.54	46.43	0.46	0.34	0.19	-0.85	-0.45	Matched[6051]
YPR105C	COG4	"Essential component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering complex that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments"	Verified	chr16:736982-739567	736982-739567	99.3%	125.03	130.48	127.37	118.80	108.28	100.88	127.76	123.08	104.58	0.47	0.50	0.43	-0.24	0.30	Matched[6052]
YPR106W	ISR1	"Predicted protein kinase, overexpression causes sensitivity to staurosporine, which is a potent inhibitor of protein kinase C"	Verified	chr16:740059-741390	740059-741390	99.1%	134.04	163.57	109.81	96.93	124.95	84.06	148.81	103.37	104.51	0.55	0.42	0.43	0.02	0.81	Matched[6053]
YPR107C	YTH1	"Essential RNA-binding component of cleavage and polyadenylation factor, contains five zinc fingers; required for pre-mRNA 3'-end processing and polyadenylation"	Verified	chr16:741436-742062	741436-742062	99.1%	141.56	114.22	115.83	99.74	262.22	133.52	127.89	107.78	197.87	0.47	0.44	0.82	0.88	0.27	Covered/w/another[6053]
YPR108W	RPN7	"Essential, non-ATPase regulatory subunit of the 26S proteasome, similar to another S. cerevisiae regulatory subunit, Rpn5p, as well as to mammalian proteasome subunits"	Verified	chr16:742452-743741	742452-743741	98.7%	542.47	427.07	579.37	508.72	1035.49	700.27	484.77	544.05	867.88	1.79	2.21	3.60	0.67	0.67	Matched[6054]
YPR108W-A		Putative protein of unknown function; identified by fungal homology and RT-PCR	Uncharacterized	chr16:744173-744385	744173-744385	75.6%	0.00	6.21	0.00	0.00	31.06	6.21	3.11	0.00	18.63	0.01	0.00	0.08	Inf	NaN	Overlap[6055]
YPR109W		Predicted membrane protein; dipoid deletion strain has high budding index	Uncharacterized	chr16:744687-745571	744687-745571	98.8%	177.33	162.46	168.18	116.69	265.42	148.73	169.89	142.43	207.07	0.63	0.58	0.86	0.54	0.18	Matched[6055]
YPR110C	RPC40	"RNA polymerase subunit, common to RNA polymerase I and III"	Verified	chr16:745826-746833	745826-746833	99.1%	766.57	537.40	591.44	462.35	78.06	39.03	651.99	526.90	58.54	2.41	2.14	0.24	-3.17	-2.77	Frag>80[6056,6057]
YPR111W	DBF20	"Ser/Thr kinase involved in late nuclear division, one of the mitotic exit network (MEN) proteins; necessary for the execution of cytokinesis"	Verified	chr16:747304-748998	747304-748998	98.7%	59.76	79.48	53.19	50.20	48.41	44.22	69.62	51.69	46.31	0.26	0.21	0.19	-0.16	0.23	Covered/w/another[6058]
YPR112C	MRD1	"Essential conserved protein that associates with 35S precursor rRNA and is required for its initial processing at the A(0)-A(2) cleavage sites, shows partial nucleolar localization, contains five consensus RNA-binding domains"	Verified	chr16:749254-751917	749254-751917	99.3%	187.80	107.69	95.22	68.77	12.47	4.91	147.75	82.00	8.69	0.55	0.33	0.04	-3.24	-2.92	Covered/w/another[6058]
YPR113W	PIS1	"Phosphatidylinositol synthase, required for biosynthesis of phosphatidylinositol, which is a precursor for polyphosphoinositides, sphingolipids, and glycolipid anchors for some of the plasma membrane proteins"	Verified	chr16:752255-752917	752255-752917	98.8%	1609.06	2076.20	1525.09	1506.77	1212.14	960.24	1842.63	1515.93	1086.19	6.80	6.15	4.50	-0.48	-0.37	Matched[6059]
YPR114W		Putative protein of unknown function	Uncharacterized	chr16:753299-754246	753299-754246	99.1%	508.87	613.20	495.03	472.68	390.70	380.06	561.04	483.85	385.38	2.07	1.96	1.60	-0.33	-0.05	Matched[6060]
YPR115W		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm	Uncharacterized	chr16:754875-758126	754875-758126	98.7%	182.86	246.72	211.83	198.75	165.41	168.53	214.79	205.29	166.97	0.79	0.83	0.69	-0.30	0.38	Matched[6061]
YPR116W		Putative protein of unknown function	Uncharacterized	chr16:758646-759479	758646-759479	98.9%	4.85	7.28	8.49	4.85	8.49	18.19	6.06	6.67	13.34	0.02	0.03	0.06	1.00	1.16	Overlap[6062]
YPR117W		Putative protein of unknown function	Uncharacterized	chr16:760023-767492	760023-767492	98.9%	57.37	67.24	42.21	37.21	31.52	55.20	62.31	39.71	43.36	0.23	0.16	0.18	0.13	0.17	Matched[6062]
YPR118W		"Methylthioribose-1-phosphate isomerase, catalyzes the isomerization of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate in the methionine salvage pathway"	Verified	chr16:767750-768985	767750-768985	98.8%	375.73	220.20	326.61	318.43	148.98	75.31	297.96	322.52	112.15	1.10	1.31	0.46	-1.52	-1.87	Matched[6063]
YPR119W	CLB2	"B-type cyclin involved in cell cycle progression; activates Cdc28p to promote the transition from G2 to M phase; accumulates during G2 and M, then targeted via a destruction box motif for ubiquitin-mediated degradation by the proteasome"	Verified	chr16:771651-773126	771651-773126	98.7%	220.40	231.38	223.14	187.44	120.15	78.27	225.89	205.29	99.21	0.83	0.83	0.41	-1.05	-0.67	Matched[6065]
YPR120C	CLB5	B-type cyclin involved in DNA replication during S phase; activates Cdc28p to promote initiation of DNA synthesis; functions in formation of mitotic spindles along with Clb3p and Clb4p; most abundant during late G1 phase	Verified	chr16:773873-775180	773873-775180	98.6%	117.11	94.62	91.52	59.72	45.76	27.92	105.87	75.62	36.84	0.39	0.31	0.15	-1.04	-0.45	Frag>80[6066,6067]
YPR121W	THI22	Protein with similarity to hydroxymethylpyrimidine phosphate kinases; member of a gene family with THI20 and THI21; not required for thiamine biosynthesis	Verified	chr16:778579-780297	778579-780297	98.4%	83.93	124.12	61.47	56.15	47.28	39.01	104.03	58.81	43.15	0.38	0.24	0.18	-0.45	0.39	Covered[6068]
YPR122W	AXL1	Haploid specific endoprotease that performs one of two N-terminal cleavages during maturation of a-factor mating pheromone; required for axial budding pattern of haploid cells	Verified	chr16:782041-785667	782041-785667	99.0%	140.68	165.76	123.69	94.72	84.41	72.71	153.22	109.20	78.56	0.57	0.44	0.33	-0.48	-0.24	Matched[6069]
YPR124W	CTR1	"High-affinity copper transporter of the plasma membrane, mediates nearly all copper uptake under low copper conditions; transcriptionally induced at low copper levels and degraded at high copper levels"	Verified	chr16:786204-787424	786204-787424	98.7%	486.37	120.35	464.79	294.65	673.12	353.58	303.36	379.72	513.35	1.12	1.54	2.13	0.44	1.01	Matched[6070]
YPR123C		Hypothetical protein	Dubious	chr16:786137-786571	786137-786571	98.2%	299.74	74.93	346.57	248.22	426.19	222.46	187.34	297.39	324.32	0.69	1.21	1.34	0.13	-0.09	Covered/w/another[6070]
YPR125W	YLH47	"Mitochondrial inner membrane protein exposed to the mitochondrial matrix, associates with mitochondrial ribosomes, NOT required for respiratory growth; homolog of human Letm1, a protein implicated in Wolf-Hirschhorn syndrome"	Verified	chr16:787957-789321	787957-789321	98.6%	164.23	147.14	139.71	133.02	101.07	83.97	155.68	136.36	92.52	0.57	0.55	0.38	-0.56	0.21	Frag>80[6071,6072]
YPR126C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr16:789073-789381	789073-789381	98.2%	237.33	220.85	194.48	151.63	145.04	141.74	229.09	173.05	143.39	0.85	0.70	0.59	-0.27	0.22	Matched[6072]
YPR127W		Putative protein of unknown function; expression is activated by transcription factor YRM1/YOR172W; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus	Uncharacterized	chr16:790079-791116	790079-791116	98.6%	194.45	289.23	202.26	165.13	472.93	463.15	241.84	183.70	468.04	0.89	0.75	1.94	1.35	1.66	Matched[6073]
YPR128C	ANT1	Peroxisomal adenine nucleotide transporter; involved in beta-oxidation of medium-chain fatty acid; required for peroxisome proliferation	Verified	chr16:791214-792200	791214-792200	98.9%	136.25	141.38	171.08	151.62	116.79	96.30	138.81	161.35	106.54	0.51	0.65	0.44	-0.60	0.15	Matched[6074]
YPR129W	SCD6	"Protein containing an Lsm domain, may bind RNA and have a role in RNA processing; overproduction suppresses a null mutation in CHC1, which encodes the heavy chain of clathrin"	Verified	chr16:792683-793732	792683-793732	98.6%	496.34	446.13	522.41	500.20	477.99	377.56	471.23	511.31	427.78	1.74	2.08	1.77	-0.26	0.06	Matched[6075]
YPR130C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr16:793370-793777	793370-793777	98.7%	501.45	464.21	600.74	533.72	575.92	369.88	482.83	567.23	472.90	1.78	2.30	1.96	-0.26	-0.19	Matched[6075]
YPR131C	NAT3	"Catalytic subunit of the NatB N-terminal acetyltransferase, which catalyzes acetylation of the amino-terminal methionine residues of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met"	Verified	chr16:793907-794494	793907-794494	99.3%	167.88	183.30	161.03	133.62	169.59	104.50	175.59	147.32	137.04	0.65	0.60	0.57	-0.10	0.12	Matched[6076]
YPR132W	RPS23B	"Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit, required for translational accuracy; nearly identical to Rps23Ap and similar to E. coli S12 and rat S23 ribosomal proteins; deletion of both RPS23A and RPS23B is lethal"	Verified	chr16:794961-795763	794961-795025,795391-795763	42.6%	10337.80	8729.22	9608.58	8042.90	2777.48	2756.03	9533.51	8825.74	2766.76	35.19	35.83	11.46	-1.67	-3.52	Matched[6077]
YPR133C	SPN1	"Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II, probable transcriptional elongation factor; metazoan homologs contain an acidic N terminus; mutations in the gene confer an Spt- phenotype"	Verified	chr16:795974-797206	795974-797206	99.3%	336.43	350.31	356.84	360.93	300.50	201.69	343.37	358.89	251.10	1.27	1.46	1.04	-0.52	-0.33	Matched[6078]
YPR133W-A	TOM5	Small mitochondrial outer membrane protein crucial to a binding relay for the import of proteins into mitochondria; subunit on the outer mouth of the TOM channel that accepts precursors from the receptors Tom20p and Tom22p	Verified	chr16:797553-797705	797553-797705	98.4%	1507.89	1162.47	1468.03	1361.75	1228.90	624.41	1335.18	1414.89	926.65	4.93	5.74	3.84	-0.61	-1.03	Matched[6079]
YPR134W	MSS18	Nuclear encoded protein needed for efficient splicing of mitochondrial COX1 aI5beta intron; mss18 mutations block cleavage of 5' exon - intron junction; phenotype of intronless strain suggests additional functions	Verified	chr16:798047-798853	798047-798853	98.6%	109.35	115.64	105.58	100.56	106.84	60.33	112.50	103.07	83.59	0.42	0.42	0.35	-0.30	-0.06	Matched[6080]
YPR135W	CTF4	"Chromatin-associated protein, required for sister chromatid cohesion; interacts with DNA polymerase alpha (Pol1p) and may link DNA synthesis to sister chromatid cohesion"	Verified	chr16:799230-802013	799230-802013	98.8%	103.66	88.02	102.56	88.74	62.92	52.01	95.84	95.65	57.46	0.35	0.39	0.24	-0.74	-0.34	Matched[6081]
YPR137W	RRP9	"Protein involved in pre-rRNA processing, associated with U3 snRNP; component of small ribosomal subunit (SSU) processosome; ortholog of the human U3-55k protein"	Verified	chr16:802355-804076	802355-804076	98.4%	239.57	155.78	164.04	129.82	32.45	34.22	197.67	146.93	33.34	0.73	0.60	0.14	-2.14	-2.18	Matched[6082]
YPR136C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps verified ORF RRP9"	Dubious	chr16:802321-802833	802321-802833	98.2%	172.75	137.01	119.14	109.21	15.88	51.63	154.88	114.17	33.76	0.57	0.46	0.14	-1.76	-0.86	Covered/w/another[6082]
YPR138C	MEP3	Ammonium permease of high capacity and low affinity; belongs to a ubiquitous family of cytoplasmic membrane proteins that transport only ammonium (NH4+); expression is under the nitrogen catabolite repression regulation ammonia permease	Verified	chr16:810980-812449	810980-812449	98.9%	295.12	314.39	260.04	200.88	300.63	216.70	304.76	230.46	258.66	1.12	0.94	1.07	0.17	0.35	Covered/w/another[6084]
YPR139C	VPS66	Cytoplasmic protein of unknown function involved in vacuolar protein sorting.	Verified	chr16:813152-814054	813152-814054	99.1%	258.04	231.23	254.69	226.76	222.29	197.72	244.64	240.73	210.01	0.90	0.98	0.87	-0.20	0.03	Covered/w/another[6084]
YPR140W	TAZ1	"Lyso-phosphatidylcholine acyltransferase, required for normal phospholipid content of mitochondrial membranes; may remodel acyl groups of cardiolipin in the inner membrane; similar to human tafazzin, which is implicated in Barth syndrome"	Verified	chr16:814387-815532	814387-815532	98.8%	168.62	142.13	181.86	177.44	323.11	244.54	155.37	179.65	283.82	0.57	0.73	1.18	0.66	0.67	Matched[6085]
YPR141C	KAR3	"Minus-end-directed microtubule motor that functions in mitosis and meiosis, localizes to the spindle pole body and localization is dependent on functional Cik1p, required for nuclear fusion during mating; potential Cdc28p substrate"	Verified	chr16:815730-817919	815730-817919	99.4%	80.84	79.01	63.85	59.71	57.88	43.64	79.92	61.78	50.76	0.30	0.25	0.21	-0.28	-0.01	Matched[6086]
YPR143W	RRP15	"Nucleolar protein, constituent of pre-60S ribosomal particles; required for processing of the 27S pre-rRNA at the A2 site to yield 5.8S and 25S rRNA"	Verified	chr16:818319-819071	818319-819071	97.9%	488.36	269.95	276.74	240.11	84.11	46.12	379.15	258.42	65.11	1.40	1.05	0.27	-1.99	-2.14	Matched[6087]
YPR142C		Hypothetical protein; open reading frame overlaps 5' end of essential RRP15 gene required for ribosomal RNA processing	Dubious	chr16:818126-818689	818126-818689	98.0%	318.43	164.64	161.03	150.17	56.09	34.38	241.54	155.60	45.23	0.89	0.63	0.19	-1.78	-0.89	Frag<80[6087]
YPR144C	NOC4	"Nucleolar protein, forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits"	Verified	chr16:819761-821419	819761-821419	98.9%	193.74	130.38	101.74	84.68	18.28	20.10	162.06	93.21	19.19	0.60	0.38	0.08	-2.28	-3.25	Matched[6088]
YPR145W	ASN1	"Asparagine synthetase, isozyme of Asn2p; catalyzes the synthesis of L-asparagine from L-aspartate in the asparagine biosynthetic pathway"	Verified	chr16:822616-824334	822616-824334	90.6%	2747.87	2851.26	2248.90	2079.36	655.66	518.88	2799.56	2164.13	587.27	10.33	8.78	2.43	-1.88	-1.77	Matched[6091]
YPR145C-A		Putative protein of unknown function	Uncharacterized	chr16:824686-824922	824686-824922	99.5%	4.24	4.24	0.00	8.48	21.21	21.21	4.24	4.24	21.21	0.02	0.02	0.09	2.32	NaN	Matched[6092]
YPR146C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr16:825343-825672	825343-825672	99.2%	161.87	232.12	155.76	161.87	192.42	106.90	197.00	158.82	149.66	0.73	0.64	0.62	-0.09	-0.18	Frag<80[6093]
YPR147C		Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and is induced in response to the DNA-damaging agent MMS	Uncharacterized	chr16:825641-826555	825641-826555	99.1%	208.48	238.27	195.25	188.63	207.38	129.06	223.38	191.94	168.22	0.82	0.78	0.70	-0.19	-0.08	Matched[6094]
YPR148C		"Protein of unknown function that may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern"	Verified	chr16:826829-828136	826829-828136	98.8%	454.26	444.97	406.28	440.33	578.08	441.11	449.62	423.31	509.59	1.66	1.72	2.11	0.27	0.27	Frag>80[6095,6096,6097]
YPR149W	NCE102	Protein of unknown function; contains transmembrane domains; involved in secretion of proteins that lack classical secretory signal sequences; component of the detergent-insoluble glycolipid-enriched complexes (DIGs)	Verified	chr16:829914-830435	829914-830435	99.1%	3906.57	5257.73	4992.91	4855.67	20128.22	15233.89	4582.15	4924.29	17681.06	16.91	19.99	73.26	1.84	1.17	Matched[6099]
YPR150W		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene SUE1/YPR151C"	Dubious	chr16:830995-831516	830995-831516	99.2%	15.45	15.45	25.10	21.24	249.11	133.25	15.45	23.17	191.18	0.06	0.09	0.79	3.04	0.87	Covered/w/another[6100]
YPR151C	SUE1	Mitochondrial protein required for degradation of unstable forms of cytochrome c	Verified	chr16:831051-831671	831051-831671	99.2%	16.24	8.12	22.73	17.86	243.57	129.91	12.18	20.30	186.74	0.04	0.08	0.77	3.20	3.07	Covered/w/another[6100]
YPR152C		"Pre-mRNA splicing factor associated with the U2-U5-U6 snRNPs, the RES complex, and the Prp19-associated complex (NTC); null mutation displays synthetic genetic interactions with mutations affecting U2 snRNA and pre-mRNA splicing factors"	Uncharacterized	chr16:832057-833454	832057-833454	99.1%	46.91	57.01	37.52	32.47	38.25	43.30	51.96	35.00	40.77	0.19	0.14	0.17	0.22	0.30	Covered/w/another[6100]
YPR153W		Putative protein of unknown function	Verified	chr16:833685-834241	833685-833689,833824-834241	98.9%	50.18	74.08	57.35	43.02	64.52	38.24	62.13	50.18	51.38	0.23	0.20	0.21	0.03	-0.68	Matched[6101]
YPR154W	PIN3	Protein that induces appearance of [PIN+] prion when overproduced	Verified	chr16:834561-835208	834561-835208	98.5%	285.12	469.97	324.28	332.11	2207.31	2537.86	377.55	328.20	2372.58	1.39	1.33	9.83	2.85	2.62	Frag>80[6102,6103]
YPR155C	NCA2	Protein involved in regulation of mitochondrial expression of subunits 6 (Atp6p) and 8 (Atp8p) of the Fo-F1 ATP synthase; functions with Nca3p	Verified	chr16:835559-837409	835559-837409	99.3%	71.31	81.10	87.09	101.25	149.15	101.79	76.21	94.17	125.47	0.28	0.38	0.52	0.41	0.43	Matched[6104]
YPR156C	TPO3	Polyamine transport protein specific for spermine; localizes to the plasma membrane; member of the major facilitator superfamily	Verified	chr16:837905-839773	837905-839773	39.4%	233.52	257.96	176.50	135.77	134.41	126.27	245.74	156.14	130.34	0.91	0.63	0.54	-0.26	-0.04	Frag<80[6105,6106,6107]
YPR157W		Putative protein of unknown function	Uncharacterized	chr16:841262-842665	841262-842665	98.5%	26.03	25.30	11.57	13.01	26.75	28.20	25.67	12.29	27.47	0.09	0.05	0.11	1.16	1.40	Frag<80[6108]
YPR158W		Putative protein of unknown function	Uncharacterized	chr16:843258-844016	843258-844016	98.7%	73.39	77.39	116.08	89.40	1288.93	600.43	75.39	102.74	944.68	0.28	0.42	3.91	3.20	2.82	Matched[6109]
YPR159W	KRE6	"Protein required for beta-1,6 glucan biosynthesis; putative beta-glucan synthase; appears functionally redundant with Skn1p"	Verified	chr16:857579-859741	857579-859741	98.1%	388.39	402.06	387.92	313.45	214.46	158.37	395.22	350.68	186.42	1.46	1.42	0.77	-0.91	-0.26	Matched[6115]
YPR159C-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Uncharacterized	chr16:860310-860411	860310-860411	49.5%	39.64	0.00	0.00	19.82	138.73	19.82	19.82	9.91	79.27	0.07	0.04	0.33	3.00	NaN	Matched[6116]
YPR160W	GPH1	"Non-essential glycogen phosphorylase required for the mobilization of glycogen, activity is regulated by cyclic AMP-mediated phosphorylation, expression is regulated by stress-response elements and by the HOG MAP kinase pathway"	Verified	chr16:861302-864010	861302-864010	98.8%	359.91	1654.54	904.82	1198.21	4826.83	4248.29	1007.23	1051.51	4537.56	3.72	4.27	18.80	2.11	1.93	Matched[6117]
YPR160W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data; identified by expression profiling and mass spectrometry"	Dubious	chr16:861930-862010	861930-862010	98.6%	187.79	863.85	475.74	713.61	1802.82	2679.19	525.82	594.68	2241.00	1.94	2.41	9.29	1.91	NaN	Covered/w/another[6117]
YPR160C-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr16:862573-862857	862573-862857	98.9%	287.40	1245.42	741.57	1064.46	3487.88	3800.12	766.41	903.02	3644.00	2.83	3.67	15.10	2.01	NaN	Covered/w/another[6117]
YPR161C	SGV1	"Cyclin (Bur2p)-dependent protein kinase that functions in transcriptional regulation; phosphorylates the carboxy-terminal domain of Rpo21p, which is the largest subunit of RNA polymerase II; regulated by Cak1p"	Verified	chr16:864445-866418	864445-866418	99.1%	165.58	140.54	159.44	162.00	93.01	77.68	153.06	160.72	85.34	0.57	0.65	0.35	-0.91	-0.41	Matched[6118]
YPR162C	ORC4	"Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing"	Verified	chr16:866711-868300	866711-868300	99.2%	91.33	90.70	79.92	70.40	84.36	87.53	91.01	75.16	85.94	0.34	0.31	0.36	0.19	0.62	Frag>80[6119,6120,6121]
YPR163C	TIF3	"Translation initiation factor eIF-4B, has RNA annealing activity; contains an RNA recognition motif and binds to single-stranded RNA"	Verified	chr16:868641-869951	868641-869951	90.3%	2018.72	1339.06	1550.13	1543.38	253.29	200.94	1678.89	1546.75	227.12	6.20	6.28	0.94	-2.77	-2.60	Frag>80[6121,6122,6123]
YPR164W	MMS1	Protein likely involved in protection against replication-dependent DNA damage; mutants are sensitive to methyl methanesulfonate (MMS); implicated in regulation of Ty1 transposition	Verified	chr16:870699-874922	870699-874922	99.0%	57.65	84.20	42.10	45.93	24.40	38.51	70.93	44.02	31.46	0.26	0.18	0.13	-0.48	0.15	Matched[6124]
YPR165W	RHO1	"GTP-binding protein of the rho subfamily of Ras-like proteins, involved in establishment of cell polarity; regulates protein kinase C (Pkc1p) and the cell wall synthesizing enzyme 1,3-beta-glucan synthase (Fks1p and Gsc2p)"	Verified	chr16:875364-875993	875364-875993	98.4%	2492.27	2361.61	2521.31	2369.67	3335.93	1834.12	2426.94	2445.49	2585.02	8.96	9.93	10.71	0.08	-0.94	Matched[6125]
YPR166C	MRP2	Mitochondrial ribosomal protein of the small subunit	Verified	chr16:876278-876625	876278-876625	99.4%	488.44	456.65	580.92	430.64	589.60	329.48	472.54	505.78	459.54	1.74	2.05	1.90	-0.14	-0.70	Matched[6126]
YPR167C	MET16	"3'-phosphoadenylsulfate reductase, reduces 3'-phosphoadenylyl sulfate to adenosine-3',5'-bisphosphate and free sulfite using reduced thioredoxin as cosubstrate, involved in sulfate assimilation and methionine metabolism"	Verified	chr16:876843-877628	876843-877628	99.2%	64.14	132.13	64.14	57.73	71.84	35.92	98.13	60.93	53.88	0.36	0.25	0.22	-0.18	-0.27	Matched[6127]
YPR168W	NUT2	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; required for transcriptional activation and has a role in basal transcription	Verified	chr16:878072-878545	878072-878545	98.7%	104.70	91.88	81.20	76.92	85.47	79.06	98.29	79.06	82.26	0.36	0.32	0.34	0.06	0.62	Covered/w/another[6128]
YPR169W	JIP5	"Nucleolar protein of unknown function, exhibits a physical interaction with Bre1p"	Uncharacterized	chr16:878686-880164	878686-880164	98.6%	447.73	310.60	306.49	247.52	189.24	143.99	379.17	277.00	166.61	1.40	1.12	0.69	-0.73	-0.56	Covered/w/another[6128]
YPR169W-A		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps two other dubious ORFs: YPR170C and YPR170W-B"	Dubious	chr16:883235-883453	883235-883453	99.5%	1018.74	1073.80	936.14	945.32	899.43	660.80	1046.27	940.73	780.11	3.86	3.82	3.23	-0.27	NaN	Matched[6129]
YPR170W-B		"Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data; partially overlaps the dubious genes YPR169W-A, YPR170W-A and YRP170C"	Dubious	chr16:883235-883591	883235-883383,883483-883591	99.1%	1677.69	1853.67	1482.16	1380.48	1466.51	965.94	1765.68	1431.32	1216.23	6.52	5.81	5.04	-0.23	NaN	Matched[6129]
YPR170C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORFs YPR169W-A and YPR170W-B"	Dubious	chr16:882979-883314	882979-883314	99.0%	565.41	514.29	526.32	442.11	511.28	312.78	539.85	484.21	412.03	1.99	1.97	1.71	-0.23	-0.37	Matched[6129]
YPR170W-A		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data; identified by expression profiling and mass spectrometry"	Dubious	chr16:883374-883559	883374-883559	99.5%	707.63	885.89	599.59	567.18	648.21	421.34	796.76	583.39	534.77	2.94	2.37	2.22	-0.13	NaN	Matched[6129]
YPR171W	BSP1	Adapter that links synaptojanins Inp52p and Inp53p to the cortical actin cytoskeleton	Verified	chr16:883824-885554	883824-885554	98.8%	146.16	130.38	112.84	126.29	109.33	87.11	138.27	119.56	98.22	0.51	0.49	0.41	-0.28	0.08	Matched[6130]
YPR172W		"Protein of unknown function, transcriptionally activated by Yrm1p along with genes involved in multidrug resistance"	Uncharacterized	chr16:885792-886394	885792-886394	98.8%	204.71	273.51	201.36	219.81	437.95	337.27	239.11	210.59	387.61	0.88	0.85	1.61	0.88	0.84	Matched[6131]
YPR173C	VPS4	AAA-type ATPase that is regulated by Vta1p; required for late endosome to vacuole transport; catalyzes the release of an endosomal membrane-associated class E VPS protein complex; regulates cellular sterol metabolism	Verified	chr16:886520-887833	886520-887833	99.3%	667.09	673.99	535.97	504.54	673.99	583.51	670.54	520.26	628.75	2.48	2.11	2.61	0.27	0.41	Covered/w/another[6132]
YPR174C		Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery; potential Cdc28p substrate	Uncharacterized	chr16:888039-888704	888039-888704	98.7%	212.95	159.72	146.03	98.87	147.55	167.32	186.34	122.45	157.43	0.69	0.50	0.65	0.36	0.61	Covered/w/another[6132]
YPR175W	DPB2	"Second largest subunit of DNA polymerase II (DNA polymerase epsilon), required for normal yeast chromosomal replication; expression peaks at the G1/S phase boundary; potential Cdc28p substrate"	Verified	chr16:888970-891039	888970-891039	98.9%	74.77	65.00	72.81	43.00	60.60	44.47	69.88	57.91	52.53	0.26	0.24	0.22	-0.14	0.19	Matched[6133]
YPR176C	BET2	Beta subunit of Type II geranylgeranyltransferase required for vesicular transport between the endoplasmic reticulum and the Golgi; provides a membrane attachment moiety to Rab-like proteins Ypt1p and Sec4p	Verified	chr16:891097-892074	891097-892074	99.0%	173.50	187.96	178.67	142.52	186.93	109.47	180.73	160.59	148.20	0.67	0.65	0.61	-0.12	-0.35	Matched[6134]
YPR178W	PRP4	"Splicing factor, component of the U4/U6-U5 snRNP complex"	Verified	chr16:892328-893725	892328-893725	98.5%	68.99	69.72	75.53	49.38	75.53	46.48	69.35	62.45	61.00	0.26	0.25	0.25	-0.03	0.44	Matched[6135]
YPR177C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the 5' end of the essential PRP4 gene encoding a component of the U4/U6-U5 snRNP complex"	Dubious	chr16:892309-892680	892309-892680	98.4%	62.84	40.98	43.72	27.32	57.38	27.32	51.91	35.52	42.35	0.19	0.14	0.18	0.25	0.04	Covered/w/another[6135]
YPR179C	HDA3	Subunit of a possibly tetrameric trichostatin A-sensitive class II histone deacetylase complex that contains an Hda1p homodimer and an Hda2p-Hda3p heterodimer; required for the activity of the complex; has similarity to Hda2p	Verified	chr16:893793-895760	893793-895760	99.3%	96.19	104.37	84.93	77.26	102.33	56.28	100.28	81.09	79.30	0.37	0.33	0.33	-0.03	0.08	Matched[6136]
YPR180W	AOS1	"Nuclear protein that acts as a heterodimer with Uba2p to activate Smt3p (SUMO) before its conjugation to proteins (sumoylation), which may play a role in protein targeting; essential for viability"	Verified	chr16:895957-897000	895957-897000	98.6%	184.56	185.53	163.19	192.33	346.78	228.28	185.05	177.76	287.53	0.68	0.72	1.19	0.69	0.79	Matched[6137]
YPR181C	SEC23	"GTPase-activating protein; component of the Sec23p-Sec24p heterodimeric complex of the COPII vesicle coat, involved in ER to Golgi transport and autophagy; stimulates the GDP-bound form of Sar1p"	Verified	chr16:897357-899663	897357-899663	98.6%	573.04	526.86	621.86	575.24	509.27	565.12	549.95	598.55	537.20	2.03	2.43	2.23	-0.16	0.39	Matched[6138]
YPR182W	SMX3	"Core Sm protein Sm F; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Sme1p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm F"	Verified	chr16:900190-900450	900190-900450	98.3%	183.27	304.14	261.25	237.86	382.13	148.17	243.70	249.55	265.15	0.90	1.01	1.10	0.09	0.27	Matched[6139]
YPR183W	DPM1	"Dolichol phosphate mannose (Dol-P-Man) synthase of the ER membrane, catalyzes the formation of Dol-P-Man from Dol-P and GDP-Man; required for glycosyl phosphatidylinositol membrane anchoring, O mannosylation, and protein glycosylation"	Verified	chr16:900751-901554	900751-901554	98.5%	1147.24	1151.03	1187.63	1142.20	814.05	757.26	1149.14	1164.91	785.65	4.24	4.73	3.26	-0.57	-0.19	Matched[6140]
YPR184W	GDB1	"Glycogen debranching enzyme containing glucanotranferase and alpha-1,6-amyloglucosidase activities, required for glycogen degradation; phosphorylated in mitochondria"	Verified	chr16:902040-906650	902040-906650	98.7%	83.91	246.90	161.23	202.75	477.11	679.43	165.41	181.99	578.27	0.61	0.74	2.40	1.67	2.07	Frag>80[6141,6142]
YPR185W	ATG13	"Phosphorylated protein that interacts with Vac8p, required for the cytoplasm-to-vacuole targeting (Cvt) pathway and autophagy"	Verified	chr16:907214-909430	907214-909430	98.6%	187.10	268.53	191.68	192.14	245.66	210.89	227.82	191.91	228.28	0.84	0.78	0.95	0.25	0.29	Matched[6143]
YPR186C	PZF1	"Transcription factor IIIA (TFIIIA), essential protein with nine C2H2 Zn-fingers, binds the 5S rRNA gene through the zinc finger domain and directs assembly of a multiprotein initiation complex for RNA polymerase III; also binds DNA"	Verified	chr16:909729-911018	909729-911018	99.3%	71.79	73.35	61.65	49.16	53.06	36.68	72.57	55.40	44.87	0.27	0.22	0.19	-0.30	-0.31	Matched[6144]
YPR187W	RPO26	"RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III; part of central core; similar to bacterial omega subunit"	Verified	chr16:911253-911796	911253-911272,911349-911796	98.5%	1270.69	943.26	1049.51	917.24	318.76	219.01	1106.98	983.38	268.88	4.09	3.99	1.11	-1.87	-1.97	Matched[6145]
YPR188C	MLC2	"Regulatory light chain for the type II myosin, Myo1p; binds to an IQ motif of Myo1p, localization to the bud neck depends on Myo1p; involved in the disassembly of the Myo1p ring"	Verified	chr16:911984-912475	911984-912475	99.3%	278.24	263.92	235.27	233.23	503.28	368.26	271.08	234.25	435.77	1.00	0.95	1.81	0.90	0.68	Matched[6146]
YPR189W	SKI3	Protein involved in exosome mediated 3' to 5' mRNA degradation and translation inhibition of non-poly(A) mRNAs; forms complex with Ski2p and Ski8p; required for repressing propagation of dsRNA viruses	Verified	chr16:912660-916958	912660-916958	98.6%	100.54	106.92	88.98	95.35	63.25	71.75	103.73	92.17	67.50	0.38	0.37	0.28	-0.45	-0.25	Matched[6147]
YPR190C	RPC82	RNA polymerase III subunit C82	Verified	chr16:917073-919037	917073-919037	99.2%	142.64	121.60	99.54	103.64	13.85	9.24	132.12	101.59	11.54	0.49	0.41	0.05	-3.14	-1.90	Matched[6148]
YPR191W	QCR2	"Subunit 2 of the ubiquinol cytochrome-c reductase complex, which is a component of the mitochondrial inner membrane electron transport chain; phosphorylated; transcription is regulated by Hap1p, Hap2p/Hap3p, and heme"	Verified	chr16:919377-920483	919377-920483	98.7%	598.63	718.54	800.00	970.25	1182.61	1097.48	658.58	885.13	1140.05	2.43	3.59	4.72	0.37	0.57	Matched[6149]
YPR192W	AQY1	"Spore-specific water channel that mediates the transport of water across cell membranes, developmentally controlled; may play a role in spore maturation, probably by allowing water outflow, may be involved in freeze tolerance"	Verified	chr16:921856-922773	921856-922773	98.5%	37.59	50.85	42.01	26.53	84.02	72.96	44.22	34.27	78.49	0.16	0.14	0.33	1.20	1.12	Matched[6151]
YPR193C	HPA2	"Tetrameric histone acetyltransferase with similarity to Gcn5p, Hat1p, Elp3p, and Hpa3p; acetylates histones H3 and H4 in vitro and exhibits autoacetylation activity"	Verified	chr16:922905-923375	922905-923375	99.2%	32.12	25.69	6.42	17.13	32.12	25.69	28.91	11.78	28.91	0.11	0.05	0.12	1.30	1.17	Covered/w/another[6151]
YPR194C	OPT2	"Oligopeptide transporter; member of the OPT family, with potential orthologs in S. pombe and C. albicans"	Verified	chr16:924300-926933	924300-926933	99.1%	98.09	141.01	111.12	94.26	78.17	63.99	119.55	102.69	71.08	0.44	0.42	0.29	-0.53	-0.63	Matched[6153]
YPR195C		"Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data"	Dubious	chr16:927961-928290	927961-928290	98.9%	49.04	76.62	49.04	58.23	42.91	12.26	62.83	53.63	27.58	0.23	0.22	0.11	-0.96	-0.52	Matched[6154]
YPR196W		Putative maltose activator	Uncharacterized	chr16:931372-932784	931372-932784	88.0%	40.22	58.73	27.35	15.29	31.37	13.68	49.48	21.32	22.53	0.18	0.09	0.09	0.08	0.64	Frag<80[6156]
YPR198W	SGE1	"Plasma membrane multidrug transporter of the major facilitator superfamily, acts as an extrusion permease; partial multicopy suppressor of gal11 mutations"	Verified	chr16:934030-935661	934030-935661	99.1%	163.18	182.34	136.60	126.09	110.02	63.05	172.76	131.35	86.53	0.64	0.53	0.36	-0.60	-0.31	Matched[6157]
YPR197C		"Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data"	Dubious	chr16:933894-934457	933894-934457	99.0%	89.58	91.37	80.62	57.33	68.08	44.79	90.47	68.98	56.43	0.33	0.28	0.23	-0.29	-0.43	Covered/w/another[6157]
YPR199C	ARR1	"Transcriptional activator of the bZIP family, required for transcription of genes involved in resistance to arsenic compounds"	Verified	chr16:938144-939028	938144-939028	99.2%	153.85	218.80	148.15	162.96	221.08	151.57	186.32	155.56	186.32	0.69	0.63	0.77	0.26	0.38	Matched[6159]
YPR200C	ARR2	Arsenate reductase required for arsenate resistance; converts arsenate to arsenite which can then be exported from cells by Arr3p	Verified	chr16:939275-939667	939275-939667	99.2%	66.67	28.21	38.47	48.72	64.11	58.98	47.44	43.59	61.55	0.18	0.18	0.26	0.50	-0.01	Covered/w/another[6160]
YPR201W	ARR3	"Arsenite transporter of the plasma membrane, required for resistance to arsenic compounds; transcription is activated by Arr1p in the presence of arsenite"	Verified	chr16:939918-941132	939918-941132	99.1%	21.60	20.77	14.13	10.80	38.22	39.05	21.19	12.46	38.64	0.08	0.05	0.16	1.63	1.34	Covered/w/another[6160]
YPR202W		Putative protein of unknown function with similarity to telomere-encoded helicases; YPR202W is not an essential gene; transcript is predicted to be spliced but there is no evidence that it is spliced in vivo	Uncharacterized	chr16:943028-943892	943028-943046,943195-943892	0.6%	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	NaN	-0.18	
YPR203W		Putative protein of unknown function	Uncharacterized	chr16:943876-944184	943876-944184	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	-0.15	
YPR204W		Helicase-like protein encoded within the telomeric Y' element	Uncharacterized	chr16:944599-947697	944599-947697	0.0%	Inf	Inf	NaN	NaN	NaN	NaN	Inf	NaN	NaN	Inf	NaN	NaN	NaN	0.20	
YPR204C-A		"Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching"	Dubious	chr16:946852-947334	946852-947334	0.0%	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN