Richards et al. (2009) Supplemental Dataset 9A. Figure 4C unmasked (mase) sequence alignment. ;; saved by seaview on Sat Sep 6 15:35:47 2008 ;; saved by seaview on Thu Jul 10 10:54:29 2008 ;; saved by seaview on Tue Jul 8 17:01:59 2008 ;; saved by seaview on Fri Jul 4 12:58:47 2008 ;; saved by seaview on Thu Jun 5 10:48:27 2008 ;; saved by seaview on Mon Jun 2 22:50:12 2008 ;;# of segments=14 mask2 ;; 93,105 107,108 110,111 121,161 166,230 233,243 247,249 251,287 296,297 ;; 300,301 303,308 330,352 361,362 374,386 ;no comment 15234485 -----------------------------------------MFSRFVLKSWRPKTQTTSL NSIKGFSFSSSSINPK--PKI-----------RVGVWWDLDNKPP-ASFPPYDAAVKLRT AASSFGTVKLMMAYANRHAFSYVPLEVREQRKDRKLLNKLE----NKGLVKPPEPYFCGV CDRRFYTNEKLINHFKQIHETENQKRMRQIESSKGHRRVRLVAKYSMKIE--KYKRAARN VLT---PKE-GYGLADELKRAGFWVKMVSDKPDAADKALKEHLVEVM-------DKR--E V-ECVVLV---------------------SDDSDFAGILWEAKERCLRTVVI-------- GDS--NEGALKRVADVAYSWKEVTMGKAKKE-VEKVV----------------------- ------------------------------------------------------------ --------------------------------GKWKDRDVLK------------------ -----------KLEWTYDPALEKERGGSCGVW------------DYEFDYDDEIENGTEV EPVEIGDGVDWWKIDTEDGVGSSRTCR-- ;no comment Semo56696 ------------------------------------------------------------ -------------ATP---SR-----------TVSIFWDLDNKPP-AL-APFTVAMRLKS AAGAFGCVRETIALANRHAFIHIPEWVREQRRERKILDILE----KTGRIQPPAPYECNL CGRKCKTNLDLKKHFKQLHERERGKRIARLNQLTGKRRAKFQSAIAAKEQ--RYRAACSG GMGTAAPAAAGYGLAAELRRAGVSVRTVSDKPDAADEALKRRMEATIFGAEGSGGSA--G E-NCVCLV---------------------SDDSGFGGVLRDARRRRARTVVI-------- GS----SGSLRRYSDAWLSWEDVMSGLGQRD----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------- ;no comment 115466628 NQTPCGRDLAALAMPPPLSFLHLAANPTPLHASPLRRARLRHRLSLRTDHPSRRAVASAS ASAGENPSTPGGPIADVEMVRGKDGVWTARPPTVVVLWDLDNKPP-RG-PPFPAATALRD AASLLGRVVSVSAFANRHAFSHVPAWVADERRERRAMDRAE----RAGAASPPVPYSCAV CGRRFPTRPDLTRHFRQLHQRERNKKLSRLRSLKGKKRQKFRERFISGNT--KYDDAARE LLT---PKV-GYGLAAELRRAGVHVRTVSDKPQAADHALKRQVKHSV--------AC--G V-DWLVLV---------------------SDDSDFTDTVRKARAADLRTVVV-------- GDG---CRALGSVADIWLPWDRVENGEVDED-MLRNGTH--------------------- ------------------------------------------------------------ --------------------------------MGFRDEEEDE------------------ -----------QDDDEFIVDWDTSDLDGVVDDIVATRTKLFGATTMSAFADEEIMDG--I LGVGINGGDMLWSSDDEDEDGYF------ ;no comment Sbi146672 --------------------MPLALSFLHLPPNTAPFHSFQVHRTHHSHLHLSLRTRRAS ATVAAAEAENPSASADVEMVRGRDGVWTARSPTVVVLWDLDNKPP-RG-PPFPAATALIG AASLLGRVVSVSAFANRHAFSHLPVWVTAERRDRRALDRAE----RAGVVAPSVPYSCAV CGRRFPTRPDLTRHFRQLHERERNKKLSRLRSLKGKKRQKFRERFISGNT--KYEDAARE LLT---PKV-GYGLASELRRAGVHVRTVSDKPQAADHALKRQVKHSV--------AC--G V-DWVVLV---------------------SDDSDFTDTVRNARAADLRTVVV-------- GDG---CRALGKVADIWLPWDRVENGEVDEE-MLRSCTF--------------------- ------------------------------------------------------------ --------------------------------AEYREDQEDERATTIS------------ -------------------------------------------------------AFADE DITDGIFDSMFWSSDDEEEDGYL------ ;no comment 15242250 ----MSLFCNSIETLYPKPFLSHKSHFFTFSNSKFQNPKFTSFPLRHQWRIESCLKSASS SEIDMVRNKEGIFAPK---EK-----------KVVVLWDLDNKPP-RG-PPYEAATALRK VAEKLGRVVEISAYANRHAFIHLPHWVVEERRERRNLDFME----RKGEVTPIDPYICGV CGRKCKTNLDLKKHFKQLHERERQKKVNRMRSLKGKKRQKFKERYVSGNE--KYNEAARS LLT---PKV-GYGLEAELRRAGVYVKTVEDKPQAADWAVKRQIQHSM--------TR--G I-DWLVLV---------------------SDDKDFSDMLRKAREADLGTLVV-------- SDM---DRALGRHADLWVPWSGVEKGEIGEK-DLIPGKR--------------------- ------------------------------------------------------------ --------------------------------PRFEEDEVGF------------------ ----------GGNDELFSLSYDEDEK---------------AEMTVESDGFGRFNVSAFS EDEWVEDEGDFVLSDSSDDDSDDELF--- ;no comment Potr287111 ------------------------------------------------------------ --------------------------------KVVVLWDLDNKPP-RG-PPYPAAMALKT VAQRFGEVIDMCAYANRHAFIHLPHWVLEERRERKHLDILE----RKEIVSPSQPYVCGV CGRKCKTNLDLKKHFKQLHERERQKKVNRMRSLKGKKRQRYKERFVSGNH--KYNEEARR LLT---PKI-GYGLAAELKRAGVYVKTVEDKPQAADWALKRQIEHSM--------SR--G V-DWLVLV---------------------SDDSDFSEILRKAREANLGTVVV-------- GDR---DRALGRHADLWVPWIGVENGELTEK-DLVPK----------------------- ------------------------------------------------------------ --------------------------------GRWRSEDL-------------------- ------------------------------------------------------------ ----------------------------- ;no comment Phpa24318 ------------------------------------------------------------ --------------------------------KVAVFWDLDNKPP-RNVPPYDAAVRLIE MAAGFGEVVDVAAYANRYAFAYLPLWVKEQRKERRQLDRLE----RAGIIKPSEPYVCGY CGRKCKTNEKLKKHFRDLHERERNKRMNRMNSLKGNKRLKYRASLSEKEE--RYRAAAKE VLV---PQV-GYGLAGELRRAGVYVRMVSDKSQAADEALKSHMNRSI--------RQ--G V-DCICLV---------------------SDDSDFANILKLAQSKHLHTVVV-------- GD----SSSLSRFADEKFSWRDVASGAALAV-ANEIE----------------------- ------------------------------------------------------------ --------------------------------GQWSLEDGYKN----------------- -----------GFEDRFYPEYERRRA---------------------------------- ------RTGNNWDFSISDSDSEEDFWDID ;no comment Phpa15899 ------------------------------------------------------------ ---------------------------------VGVFWDLDNKPP-KGVAPYKAAISLRD LASEFGLVVDMVAYANHHAFTYVPQWIRDERQERKRLSVLE----EQGAVKPEEPYICQF CGRKCQTYLKLLKHFKQLHEKERTKRMNHLKTLKGKRRQKFKAKLAEKED--KYQAIATQ LLV---PKK-GYGLATELKRAGVYVRTVEDKPQAADEALIKHMTDYI--------NK--G L-ETLILI---------------------SDDSDFVDILRFASRRNLQTIVI-------- GD----LMVLSKHADISFSWDEVASGRAQLA-AAEAH----------------------- ------------------------------------------------------------ --------------------------------KEWTNKAAL------------------- ------------------------------------------------------------ ----------------------------- ;no comment Phpa4515 ------------------------------------------------------------ ---------------K---KR-----------TVGVFWDLDNKPP-NGVMPYKAAIRLRD LAGEFGLVVDMVAYANRHAFIYVPQWVRDQRKERKRLNSLE----VQGIATPYQPYRCQY CGRKCDTYFKLKRHFKGQHERERNKRISHLKHLKGGKKQRYMEKLAQKED--KYQAIASQ LLV---PKL-GYGLAPELRRAGVYVRTVEDRPQAADAALIKHMSVYI--------NR--G L-ETLILV---------------------SDDSDFTDILRLASMRNLQTIVI-------- GD----TMTLSRHADISFSWQEVASG---------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------- ; BC1G_04853_Fgenesh_track ------------------------------------------------------------ -------MKPDAALLALNDVQEQKEPSQSPQQKVLVLWDLDNKPA-KS-PC--------- IVSRFGNVINIAAFANRRGMSFVPPSVIESRKEVKEYYALEDKLHRKCKIKPAEPYVCGI CGNKKKTQVELVKHFK-IHEKERRKKLNGAAQLKGRKRARFVARELSKEKNAKYHEAAVG ITR---PDD-RYKLDTELRRAGVVVNLVNSSSQAADKAIIAYANAMR-------HRK-ET LYDWLVLI---------------------SDDTDFGDLVKRLSRKGVRTIVV-------- GSK--PSRNLVRATCAWVPWNLVETGCIDKNAIKESFTDKVLTEKKEEKIKQIKEIYGVP ERPLSPDTPLDASFVEEILHDITSASSLDSSTRSNSISGPKKKRRKGL------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------- ;no comment SS1G_06576 ---------------------------------MIIFEEPATALLALDDAQTHQEPATAL LPLDDAQKPKKTPKPY---GG-----------KVIVLWDLDNKRPIEALNPYEAAQNIRA FASRIGKVVGIAAFANKDGLSFVPPEVRDSRKDLEEYYTLEQEMFKRHKIKPETPYVCGV CGNKKKTQKELVKHFETLHIRERQKKMNRVNQFKGAKRKKLLDKMLPRKKTIKYIEAAVG VIE---PAD-RYKLHSELKRAGVIVNQVASVRQAADKALMGSMIENA------SLKR--G V-GTIVVGNRT--KGRKKKLARAACAWLPWDMLETGRIDKDVVEGAFAQAEMRKKKAKRI GQM---------RQIFGLPELDVDGDGASYSGISSFDEDIDDHEDILDEDGNFDEK---- ----------N---------IFDEEDMCDDDLIGLDDILTRKKC---------------- ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------- ;no comment CAO61384Vv -------------------------------------------MVRNKDGVYTAKRK--- --------------------------------KVVVLWDLDNKPP-RG-PPYAAATALIE LAQRFGDIVDISAYANRHAFVHLPQWVLEERHERRRMDFLE----RKGITTPAEPYICGV CGRKCRTNLDLKKHFKQLHERERQKKLNRMRSLKGKKRQRYKEKFISGNT--KYEEAARS LIT---PKV-GYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSM--------SR--G I-DWLVLV---------------------SDDSDFADMLRRARESNLGTVVV-------- GDW---HRALGRHADLWVPWTGVENREVTEE-DLRPRNRRRSDFEDRDDGLFSVTHFNGD GIGGGILDGLVDELVVNRSECNGVNISAFSEGEEDWIGEELDKRGRVHFGAVWGTEQRSV VMMEGKCCATTEKRKQRQQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPKAAA RAYDTAVFCLRGRSARLNFPEYIAEEDEVQDLSAASIRKKATEVGARVDAMETALHASEP NSSRVSDKPDLNEYPSPESSDDD------ ;no comment ABK24771Ps ------------------------------MVRLLNLTKNLQYGKAQRPPWPASSVRPYY TGPFATEPQNENTSRS---NR-----------NVAIFWDLDNKPP-NSVPPYDAALRLRS VGRAFGFVIQMVAYANRHAFSFVPPRVRIERQQRKTLDILE----ARGLIQPEEPYICEV CGHKFKTHIKFQKHFRQLHEREQLKRLRRLDSLKGKKKDAFRAKIVPKQE--KYRVVANQ VLV---PKV-GYGLAGEIKRAGFWVITVSDKPQAADIALKKHMMDCM--------DK--G I-DCLCLV---------------------SDDTDFVEVLKVARARSLRTVVV-------- GDN---AGGLKRFADAYFSWREVANGQARSE-AVSTL----------------------- ------------------------------------------------------------ --------------------------------GLWKDDDVLRQVEWSY------------ ----------RPKRSRDCKEEEKDDADSDGDDDFKAEELKADDDDLEAALDDLIGSNATE NLENRRKAKPWWKLPSDSEDSCSSSSATS