ÒSupplemental Data, Zhang et al., (2009) Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis.Ó >AT2G42870 . ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -----------------------------------------------------------M -----EETLATPDATRRSLSP----------------SCSATVK--------SRAA--GF ERRTKRR--LSETNASVREDREEAEEE-ED------------------------------ -------------------------------------EVKEKIEALQRIIPGGAAL-GVD ALFEETAGYILSLQCQIKT----------------------------------------- ---------IKVLTSFLQRIDQEDMKFGG------------------------------- ------------------- >At3g21330 . -------------------------------------------------MEGLESVYAQA MYGMTRESKIMEHQGSDLIWGGNELMARELCSSSSYHHQLINPNLSSCFMSDLGVLGEIQ QQQHVGNRASSID-------------------------PSSLDCLLSATSNSNNTSTEDD EGISVLFSDCQTLWSFGGVSSAESENREITTETTTTIKPKPLKRNRGGDGGTTETTTTTT KPKSLKRNRGDETGSHFSLVH----------------PQDDSEKGGFKLIYDENQS--KS KKPRTEK--ERGGSSNISFQHSTCLSD-NV--------EPDAEAIAQMKEMIYRAAAFRP VNFGLE-----IVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQTLVPGGTKM-DTA SMLDEAANYLKFLRAQVKA----------------------------------------- ---------LENLRPKLDQTNLSFSSAPTSFPLFHPSFLPLQNPNQIHHPEC-------- ------------------- >Os01g0707500 . -----------------------------METFGWAGGGQLMHHDDIYLPRSVGCGRPFE LDDAFLGACFGAQLQCDGGVGGGDGGGCLQGTSGFGAVAGDPLGLLCSGDVFASVAEGAG GAHDDGLLDAALAFSRNQL-------------------GGAACDGSDGGAVSNGAMLSSY SGTTGGNISSGESNNYSGGGGGYDAEVVSPTSTMSAATQS-----------------LHP -----KRKLYDDHHHPAGIAA----------------AAAAPPLAPC-----PRPT--TG AVAAKRR--ASTSATSITFGHQPHHHH-AG--ATTAGYEPDMEAMAQVKEMIYRAAAMRP VHLGTE----AAADKPRRKNVRISSDPQTVAARLRRERVSDRLRVLQKLVPGGNKM-DTA SMLDEAASYLKFLKSQVQK----------------------------------------- ---------LETLGTTTTTSKLPQQYYSGNINSSNNHHGFLGFAANNNTISAGYANSNAG NATKLL------------- >XM_002458335_sb . -------------------------------MDATFGWAGAGHHVDEYFSRQAAAGCSRF DMDEAFLGVCFGQLQCDGALIGGGGGDAGACQVSSNACAIEGGGAGMDGDPLAFLSAGTG DVFDAGLLDAALA-------------------------FTRELGYGGAVSNGGAMLSSYS GTTGGNISSGESNNYSGGGGGGHDAEVVSPTSIMSQTTTAPPPLTFTHASSHSQQAAHGH -----RVKRKVDVSDEFPATA----------------IATTTTTA-------PPPA--PF PRPAGGGAKRRAAATSISFGGGAHVAR-DP----SAGYEPDMEAMAQVKEMIYRAAAMRP VNLGPEVIAAAAAEKPRRKNVRISSDPQTVAARLRRERVSERLRVLQKLVPGGSKM-DTA SMLDEAASYLKFLKSQVQA----------------------------------------- ---------LETLGTTNDTSTSNSTATASRSQQYNYYSSGSNNPGGFLGFAAGRSSNMIS PAGMSKND----------- >Os01g0831000 . ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------MHD -----PRGFPIHPQPYHLHPT----------------AG-------------------GL GEGRMRG-----------GGRRRPGAK-LS------------------------------ ------------------------TDPQSVAARERRHRISDRFRVLRSLVPGGSKM-DTV SMLEQAIHYVKFLKAQVTLHQAALVQHEEGCQHADVAAAFSAADADLALELNHRHGGAGD DDAGMTTLEMAPMQEAVGYGDGPAHQMMQQALDPAGQLMMGGAHQLPPLPCCVFVQETDP SCYSVCNVHGEESGAQGSY >At4g00120 . ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -----------------MENGMYKKKGVCDSCVSSKSRSN-----------------HSP -----KRSMMEPQPHHLLMD--------------------------------WNKANDLL TQEHAAF--LNDPHHLMLDPPPETLIH-LD------EDEEYDEDMDAMKEMQYMIAVMQP VDIDPA-----TVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRIVPGGAKM-DTA SMLDEAIRYTKFLKRQVRI----------------------------------------- ---------LQPHSQIGAPMANPSYLCYYHNSQP-------------------------- ------------------- >Os01g0566800 . MFRSAVAVSQLATTTTVWMDRGFNEMILSESVWNGGGGGGDGDGGAVVLPPEVGGVNAVD GSGMTMLERLVLDEALAAAILELQGIQAPGCGGGGGKVAVVPPPTAGDGGVEAAVAFAAM ATGTPAYADVDADVLQRQRQHHHRHQGAMGMAAEYDVAPATPAVTLSAVPPPPPPPAFAT AAASVDGGGAMDATVFSGIGNDDVVDAVSATVAMTTATATTSQCERVRGGGGGGGCGRKQ -----RRPGRKRKAAEPTAAAAAADMSSQDNPLCSLLASNTAGADGGIQIAFSTSA--PA SKRAKPS--LSSSSSSISFDGRGPGGNCGGGGGDDPLYEPDTEALAQVKEMIYRAAAMRP VTLGAE----DAGERPRRRNVRISSDPQTVAARQRRERISERLRVLQKLVPGGAKM-DTA SMLDEAANYLRFLKSQIRE----------------------------------------- ---------LQTLDRRNYPNAAMSINTAAATTMATSSSP---TYNNSNAAMPAFAFP--- ETL-GCGGGGVEQ----LI >XM_002457973_sb . ------------------MDHNFSDMILRESAWSGGVVGAGDGGAVLLPPVEVVGNVVEG GSGMTVLERLVLDEALAAAILELQGSIVHVQQQAPAACCAGSKAVPAAGGGVVGEEAAVA FPSMAMATPTPAYADVDADVLQRQQHHHRHHGAMGISMPPDYDLTPATTPAVAVTAAAFT ATAAVDSGGNNSLVVGRSPPPVFSASCNETTATAAAVTATTSLSCEQGGGGGGAGGGKRQ -----RRPNRKRKAAAERSPVAVAAAAAQESTLCSLLASGTTTAGEGGIQIAFSTS--AA KRSAKPSSLSSSGSSSISFDGRNNPAG-NGGGVEDSMYEPDTEALAQVKEMIYRAAAMRP VSLGSE----DAGERPRRRNVRISSDPQTVAARQRRERISERLRVLQKLVPGGAKM-DTA SMLDEAANYLRFLKSQVRE----------------------------------------- ---------LQTLDRRNYGATANNANDATAAMAAVGSSSSLMSYNNGNGAMP-FSFPAAG ETLRGSVGGGLDRPADLVI >At5G67060 . ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------MDSDIMNMMMHQMEKLPEFCNPNSS------------FFSPDHNN -----TYPFLFNSTHYQSDHS---------------MTNEPGFR--------YGSG--LL TNPSSIS--PNTAYSSVFLDKRNNSNN-NN----------NGTNMAAMREMIFRIAVMQP IHIDPE-----AVKPPKRRNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKM-DTA SMLDEAIHYVKFLKKQVQS----------------------------------------- ---------LEEQAVVTGGGGGGGGRVLIGGGGMTAASGGGGGGGVVMKGCGTVGTHQMV GNAQILR------------ >Os09g0455300 . ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------MDFDLFNSYPESQLDLMSTMLQLEQLTALSDQ---------SLFMAAPTSPP -----VSPMGTPSPQFSPPPQ----------------MSVTTTTAGGGYQDQYNSM--PA TYGAGAG--VHQLDFAMSSPGSDSGAP-QG--------SSSSSSSEAMREMIFHIAALQP VEIDPE-----AVRPPKRRNVRISKDPQSVAARLRRERISERIRILQRLVPGGTKM-DTA SMLDEAIHYVKFLKSQVQS----------------------------------------- ---------LERAAAATGAAAHRAAAFGAAYPAALPMQHHAPW----------------- ------------------- >At4g30410 . ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -----------MQPTSSMNEE-FLKKWQMGLQIFRPSIDN----------------TSVH -----ERKKAIKLSADVAMAS----------------LRKGTTC--------WSRA--LI EKTATED--NFLVRQMLSGIKAETLIN-KK---------------------------LPK KTVCHR----KIVRRSKKILRRKSKSASEEAAAKAKRLVKRRTQGLRNVVPGGELMSNDV LLLQETLDYIVSLQTQVNV----------------------------------------- ---------MRSIVDAAEAEIER------------------------------------- ------------------- >XM_002308395_pt . ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -----------MRAPSSVLKQQFLKKWIMGLQLFGSAKQN----------------MSIL -----ERKKAIRLSADIALAS----------------TRDGRTC--------WSRA--LI ANASKED--DSKVLVQHLLAPESERLK-KA---------------------SIGLIMDNK RVRCKK----ILKRSCCIKRVRKGAPQVVLAKSIAKRMVMRRTQVLKSLVPGGEFM-DDI SLIEETLDYIVSLRAQVDV----------------------------------------- ---------MRNLAKATEVVNGK------------------------------------- ------------------- >XM_002270585_vv . ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------MRPPTSLKKEFLKKWIMGLQLCSSSKKE----------------MSFL -----ERKKAIKLSADVAMAS----------------ARNATTR--------WSRA--LI SNASKDD--SNKGLVECILGPESESLK-RA---------------------SMSLVLCNK RNRSKK----ILRKSCSIRRARKSSSQMVMASSIAKRLVKKRTQVLKSLVPGGGSM-SEF SLIEETLDYILSLRAQVDV----------------------------------------- ---------MRHLANATELLNRK------------------------------------- ------------------- >At2g43060 . ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------MASADKLINT------------ ---------------DVPEKDVFAFHFLQSLSNLRKQNPF-------------DTPDQKN -----YRVRKIKKAAYVSMAR----------------AAGGSSRL-------WSRA--LL RRADKDD------NKIVRFSRRKWKIS-SK------------------------------ ----------------------------RRRSNQRAPVVEEAAERLRNLVPGGGGM-ETS KLMEETAHYIKCLSMQVKV----------------------------------------- ---------MQCLVDGLSPK---------------------------------------- ------------------- >XM_00226620_vv . ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------MTSNRVFFNT------------ ----------------SSRKARCARRFLQSLLRIRQRRPG------------SLSSEEVR -----QRSRRIKMAAYSSMAC----------------TVGSRRA--------WSRA--II FRLQSRA-------GRHGRMRRRCLGV-KK------------------------------ ----------------------------------KPSREMSQADRLRDLVPGGEAL-DFC NLLEETAHYIKCLSSQVEI----------------------------------------- ---------MKSIADIYCRS---------------------------------------- ------------------- >XM_002302854_pt . ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------MTSKHVIATR------------ --------------HTKSIKTRFASRFLRSLLRMKRSDRF---------GGSQSNEGVRK -----RSTHRIKIAAYASMAR----------------AVGPSRT--------WSRA--LL FKLRNRA-------RIQGVLRKRCFVS-KK------------------------------ -----------------------NKKKRVIRNKVIISREPSRTDTLRKLVPGGGSM-DIC CLLEETAHYIKCLATQVKV----------------------------------------- ---------MQSIADQSLL----------------------------------------- ------------------- >XM_002320413_pt . ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------MTSKHVIATT------------ --------------HTGSIKNRFARRFLRSLLKVKRSDRL------GTGTGFQSNEEIRK -----RNAQRIKTAAYRSMAR----------------VVGPRKN--------WSRA--LL FKFRYPA------RIQGAGLRKRCLVS-KK------------------------------ -----------------------KRVLRKENKVQVISREPSRADNLRKLVPGGDSM-DIC SLLDETAHYIKCLATQVKV----------------------------------------- ---------MESIADLYSE----------------------------------------- ------------------- >XM_002319444_pt . ------------------------------------------------------------ ------------------------------------------------------------ MASNQSNCDVSSQQE-----------------------PNQQRKKRRKLTHETTESHLQN DGTGETKNQPTVRWRTDTARRIYSSKLLEALRRSCRITSH------------------RG -----EKTREVRETADRVLAV----------------AARGKTR--------WSRA--IL AKRARLL--------RVKKVKKQRVAR-DR------------------------------ -------------------------KSPGSEKRRKLPPVEKKVKVLSRLVPGCRKV-SFV NLLEEASDYIAALEMQIKV----------------------------------------- ---------MTNLSEILTVAGGGGGGGGSSS----------------------------- ------------------- >At3g06590 . ------------------------------------------------------------ ------------------------------------------------------------ MASLISDIEPPT--------------------------STTSDLVRRKKRSSASSAASSR SSASSVSGEIHARWRSEKQQRIYSAKLFQALQQVRLNSSA-----------STSSSPTAQ -----KRGKAVREAADRALAV----------------SARGRTL--------WSRA--IL ANRIKLK-------FRKQRRPRATMAI-PA------------------------------ ---------MTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCGKQ-SVP VILEEATDYIQALEMQVRA----------------------------------------- ---------MNSLVQLLSSYGSAPPPI--------------------------------- ------------------- >NM_001149156_zea . ------------------------------------------------------------ ------------------------------------------------------------ MASTSSSTPAPVEVD-----------------------ERGRKRKRAAGADPAAPA---- ---------QPSKWRTRREHEIYSSKLLEAIRLVRAGPPS----------AAAAGTAAAP -----PRSRAVREAADRALAV----------------AARGRTH--------WSRA--IL ASRRRRL---QAAHRARLRAPASPPAR-HG------------------------------ ------------------------APSASAAKGAATPPLERKAKVLGRLVPGCRKL-SFP TLLAETTDYIAALQMQVRA----------------------------------------- ---------MTALAEALSAVSATSSSGAGSSSPP-------------------------- ------------------- >XM_002281810_vv . ------------------------------------------------------------ -----------------------------------------------------MEKSYMV TDSEGGYRS-----------------------------MESNRRKRKKMESGSQKV---- --------KRGGRWRTEAEQQIYSAKLVEAITKVRRSSAP----------------AAAV -----HRGRAVREAADRVLAA----------------AGKGRTR--------WSRA--IM TSRVGLR-----------LRKRRKVTV-TG------------------------------ -----------------------NNRLRKPAVSKQEPPLKRRVRVLGRLVPGCRKL-SFP NLLEEATDYIAALEMQVRA----------------------------------------- ---------MTALAELLAGTGASSSNLQPPSC---------------------------- ------------------- >XM_002444086_sb . ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------MHAPRRFKKA------------ ----------------------FMAQLLLSLRAAGQASKS----------------MGLR -----ERRDAVRLSSDVAMAL----------------ASSARARPSAARSTAWARA--LV ARHAAEQ--RNEALLRRIMGGAGYEMA-AA----------AAAAARVRKEARSRRIVRRS RRVCSAAAAGRKRRSLLQLAAGSGGGSRCSAMVAASRMVKARLQVLRSLVPGGEAM-RGL SLLTETLDYVVCLKTQVEL----------------------------------------- ---------LQCLCKGSRSQLG-------------------------------------- ------------------- >NM_001151672_zea . ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------MHAPRRFKKA------------ ----------------------FMAQLLLSLRAAGHASKS----------------MGLR -----ERRDAVRLSSDVAMAL----------------ASARARA--APRSTVWARA--LI ARHAAEQ--RNEALMRRIMGAGYEMAA-AA--------------VRARKEARCRRIVRRS RRVCSG-----VGRKRRLLAAEGGGGIRCSAMAAARRMVKARLQVLRSLVPGGEAM-GGL SLLTETLDYVVCLKAQVEL----------------------------------------- ---------MQRLCKGSCSQSQLG------------------------------------ ------------------- >NM_001149282_zea . ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------MEDLQHHVEG-------------------- -----VRARGRHHHQHQLVRE------------------RGRRR--------------IV KAAAAEE-------RALVVPPEEETST-ED------------------------------ ---------------------KLLEGPRDHEGDDEEVVVEQKVALLRQLVPGGEGM-AVE GLLEETADYIAALKAQVGA----------------------------------------- ---------MRALTCLLSGSGSGSDLDALRPESLAVGVLTPDNPM--------------- ------------------- >Os08g0414500 . ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------MMEMRRLAVSG---------------------- -----GRRRRIRPAA--------------------------------------------- -------------------ARRSGVAL-RR------------------------------ -----------------------------------------KVRELRRLVPGGEGA-PAR SLLVRTADYIVRLKARVEL----------------------------------------- ---------LRALSALYDELPLPAGV---------------------------------- ------------------- >Os04g0660100 . ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------MDAKRTPPPPTPPNPNPSVIG SGAAADGGGFGRGEAAAATKHMLAFHFLRALSRIHRATPV-------------------T -----RRTRTIRRAAYSSMAR----------------AASPRRA--------WSRA--LL GQVRARR--------SRTLMRRAAVLV-RR-----------------------------R VVAAPAPSPASARGVRIIAAGETSAAARAVPPPPRQQGEPPRAEALRRLVPGGAGM-EYS SLLEETADYLRSLRAQVQL----------------------------------------- ---------MQGLVDLFSYQ---------------------------------------- ------------------- >NM_001151521_zea . ------------------------------------------------------------ ------------------------------------------------------MARKRT AARHQHQEPPPN--------------------------PNPNLRRRAAASDPASDE---- --------------PPPSSKRMLAFHFLRALARIHSTTPA-------------------P -----RRPRTIRRAAYSSMAR----------------AASPRRA--------WTQA--LL RQARARR--------AVARSSRGAVLL-RR------------------RVASAAAPPPPP LLRASAGESTSAPTPLVAPAAVAARGPP-----PRQAGEPARADALRRLVPGGAEM-EYS SLLDETADYVRSLRAQVQL----------------------------------------- ---------MQSLVDLFSPPNDRSSNNRTSN----------------------------- ------------------- >XM_002448643_sb . ------------------------------------------------------------ ------------------------------------------------------MAGKRT RTARNQHQPPPSPPN-----------------------PNPNRRRRVADPAASDE----- ----------------RPSKRMLAFHFLRALARIHSTTPA-------------------P -----RRPRTIRRAAYSSMAR----------------AARPRRA--------WTQA--LL RQARARR-------VTVRSSRRAVLLR-RS----------------------VSDAAPPL MLRASAGETSAPTPPPPALAAVAPRGPP-----PRQAGEPARADALRQLVPGGAEM-EYC SLLDETADYVRCLRAQVQL----------------------------------------- ---------MQSLVDLFSAQQ--------------------------------------- ------------------- >NM_001149787_zea . ------------------------------------------------------------ -----------------------------------------------------MAGGKRT TARHQHNHPPPPPPN-----------------------PSPNRGRGVADPPPASD----- --------------DSPSSKRMLAFHFLRALARIHSTTPA-------------------P -----RRPRTIRRAAYSSMAR----------------AASPRRA--------WTQA--LL LRRARSR------GVAVGGSSRRAVLL-RR---------------------RVSASAPPP MLRASA-------------GATSAAAPPVQGPPPRQAGEPARADALRRIVPGGAGM-EYC SLLDETADYVLHLRAQVQL----------------------------------------- ---------MQSLVDLFSPPNPTSN----------------------------------- -------------------