#Breakpoint Type Chr Proximal_Genes First_Base Last_Base Size Aladjem_01 tandem duplication 8 CUP1 212537 212722 185 Gresham_14 translocation 14 YNR001W-A 631265 631483 218 Gresham_28 translocation 14 YNR001W-A 631265 631483 218 Schacherer_01 local duplication 10 YJL133WA 159620 159844 224 Schacherer2005_07 duplication 10 YJL133C 159620 159844 224 Payen_15 duplication 15 YOR332W-YOR333C 944354 944593 239 Koszul_57 interchromosomal 16 YPR044C-YPR045C 654874 655137 263 Payen_08 duplication 15 YOR304C-A-YOR305W 888748 889020 272 Degtyareva_10 deletion 2 YBR003W-YBR004C 235120 235397 277 Schacherer2005_06 duplication 10 YJL138C-YJL137C 154688 154982 294 Degtyareva_11 deletion 2 YBL014C-YBL013W 201751 202059 308 Degtyareva_16 duplication 2 YBR009C 255371 255682 311 Gresham_09 translocation 2 YBL100C 36986 37300 314 Schacherer2005_08 duplication 10 YJL135w 157874 158191 317 Chen_11 translocations in rfa1-t33 mutant 10 intergenic; YJL216C-YJL215C 26086 26412 326 Gresham_11 translocation 2 YNL017C 602139 602477 338 Gresham_25 translocation 14 YNL017C 602139 602477 338 Gresham_24 translocation 5 YEL010W 136279 136629 350 Gresham_04 amplification 2 YBR278W-YBR279W 760895 761253 358 Schacherer2005_04 duplication 11 YKR058W- YKR059W 554262 554629 367 Hwang_01 nonrecip translocation 9 YIR041W 433925 434299 374 Schacherer_14 deletion 13 YMR119W-A 506995 507369 374 Schacherer_06 duplication 7 YGL007W 483265 483642 377 Schacherer2005_03 tandem duplication 10 YJL190C 74909 75301 392 Schacherer2005_02 tandem duplication 10 YJL151C 136369 136770 401 Payen_04 duplication 15 YOR286W 850279 850728 449 Chen_28 translocations in rad27 mutant 5 intergenic; YEL064C-YEL063C 31239 31694 455 Chen_41 translocations in mre11 mutant 5 intergenic; YEL064C-YEL063C 31239 31694 455 Koszul_20 intra duplication 15 YOR336W-YOR337W 953867 954341 474 Payen_07 duplication 15 YOR336W-YOR337W 953867 954341 474 Payen_18 duplication 15 YOR270C-YOR271C 830573 831058 485 Koszul_18 intra duplication 15 YOR357C 1009222 1009710 488 Gresham_18 translocation 10 YJR055W 538765 539259 494 Chen_38 translocations in mre11 mutant 11 YKL122C 212139 212642 503 Schacherer_03 duplication 12 YLR109W 368782 369312 530 Payen_16 duplication 15 YOR307C-YOR308C 894089 894621 532 Argueso_15 deletion 13 YMR238W-YMR239C 747728 748261 533 Degtyareva_14 deletion 2 YBL006C 216590 217132 542 Argueso_25 amplification 3 YCR101C 302479 303027 548 Argueso_13 amplification 12 YLR066W 267170 267724 554 Schacherer_05 duplication 14 YNL079C 478567 479166 599 Koszul_48 intra duplication 15 YOR332W-YOR333C 944354 944954 600 Maxwell_02 chimeric pseudogenes 13 YMR073C 412267 412872 605 James_01 rearrangements 3 YCR039C 199542 200174 632 Gresham_27 translocation 14 YNL036W 559815 560480 665 James_02 rearrangements 5 YER139C 450558 451238 680 Argueso_45 amplification 10 YJR051W-YJR052W 531359 532055 696 Koszul_45 intra tandem duplication 15 YOR305W 889020 889748 728 Schacherer2005_01 tandem duplication 10 YJL133C-A-YJL133W 159844 160616 772 Tourrette_06 deletion 10 YJL043W 360125 360898 773 Koszul_03 intra duplication 15 YOR220W 755329 756126 797 VanHulle_03 translocation 5 YEL021W 116167 116970 803 Koszul_15 intra duplication 15 YOR278W 842816 843643 827 Gresham_15 translocation 14 YNR002C 633010 633858 848 Gresham_26 translocation 14 YNR002C 633010 633858 848 Degtyareva_07 deletion 2 YBL017C-YBL016W 191586 192454 868 Argueso_14 deletion 6 YFR028C-YFR029W 210056 210925 869 James_10 rearrangements 15 YOR344C 977191 978066 875 Koszul_08 intra duplication 15 YOR344C 977191 978066 875 Hwang_09 nonrecip translocation 10 YJL038C-YJL037W 375769 376657 888 Schacherer_17 deletion 14 YNL006W 620069 620980 911 Payen_06 duplication 15 YOR251C 802551 803465 914 Chen_13 translocations in rfa1-t33 mutant 7 YGR277C 1045651 1046568 917 Argueso_10 interstital deletion 6 YFR034C 225008 225946 938 Chen_24 translocations in rad27 mutant 5 intergenic;YEL063C-YEL062C 33466 34407 941 Huang_01 deletion 5 YEL063C-YEL062W 33466 34407 941 Maxwell_10 conservative translocation 12 YLR301W-YLR303W 731561 732544 983 Argueso_48 deletion 12 YLR301W-YLR303W 731561 732544 983 Gresham_13 translocation 8 YHL009C 84064 85056 992 James_08 rearrangements 10 YJR009C 453676 454674 998 Gresham_16 translocation 5 YER161C 499342 500343 1001 Gresham_20 translocation 5 YER161C 499342 500343 1001 Koszul_21 intra duplication 15 YOR289W-YOR290C 854111 855146 1035 Payen_14 duplication 15 YOR289W-YOR290C 854111 855146 1035 Hwang_04 nonrecip translocation 16 YPR180W 895957 897000 1043 Maxwell_07 translocation 12 YLR419W-YLR420W 962732 963782 1050 James_07 rearrangements 10 YJL053W 335893 337032 1139 Chen_44 translocations in mre11 mutant 15 YOL043C 248391 249533 1142 Hwang_05 nonrecip translocation 14 YNR048W 711632 712813 1181 Chen_31 translocations in rad27 mutant 8 YHL022C 62959 64155 1196 Degtyareva_13 deletion 2 YBL013W 202059 203264 1205 Hwang_07 nonrecip translocation 2 YBR205W 633617 634831 1214 Schacherer_02 duplication 14 YNL064W 505869 507098 1229 Tourrette_03 deletion 10 YJL130C-YJL129C 172364 173596 1232 Hwang_08 translocation/duplication 5 YER059W 272622 273884 1262 Chen_29 translocations in rad27 mutant 7 YGR149W 789036 790334 1298 Koszul_47 intra duplication 15 YOR306C-YOR307C 891430 892728 1298 Degtyareva_04 duplication 2 YBR004C 244368 245669 1301 Argueso_11 amplification 14 YNR052C 719348 720649 1301 Hwang_06 nonrecip translocation 12 YLL002W 146290 147600 1310 Schacherer_13 deletion 8 YHR174W 451327 452640 1313 Schacherer_18 deletion 8 YHR174W 451327 452640 1313 Koszul_02 intra duplication 15 YOR316C 906233 907552 1319 Payen_05 duplication 15 YOR316C 906233 907552 1319 Lemoine2008_24 translocation 12 YLR303W-YLR304C 733878 735214 1336 VanHulle_06 translocation 12 YLR303W-YLR304C 733878 735214 1336 Gresham_12 translocation 14 YNL016W 602908 604269 1361 Tourrette_04 recip translocation 2 TEF2 477665 479041 1376 Argueso_20 amplification 1 YAR033W-YAR035W 188805 190187 1382 Koszul_43 intra tandem duplication 15 YOR272W 832812 834194 1382 Argueso_36 deletion 7 YGL203C-YGL202W 114668 116063 1395 Gresham_19 deletion 2 YBR093C 429542 430945 1403 Gresham_03 amplification 2 YBR297W 800517 801923 1406 Gresham_08 amplification 2 YBR297W 800517 801923 1406 Argueso_12 amplification 14 YNR026C 673276 674691 1415 James_05 rearrangements 7 YGL172W 180706 182124 1418 Tourrette_07 deletion 10 YJL123C 188003 189439 1436 Chen_02 telo additions in rfa1-t33 mutant 5 YEL064C 29797 31239 1442 Chen_32 inversion in rad27 mutant 5 YEL064C 29797 31239 1442 Chen_35 telo addition in mre11 mutant 5 YEL064C 29797 31239 1442 Koszul_07 intra duplication 15 YOR216C 747526 748980 1454 Maxwell_03 chimeric pseudogenes 4 SPS1 1485559 1487031 1472 Koszul_04 intra duplication 15 YOR362C-YOR363C 1018744 1020220 1476 Dunham_08 intrachromosomal 15 YOL106W, YOL107W 112102 113579 1477 Koszul_17 intra duplication 15 YOR269W 826384 827868 1484 Koszul_05 intra duplication 15 YOR234C-YOR236W 779406 780907 1501 VanHulle_07 translocation 12 YLR343W-YLR344W 817761 819312 1551 Degtyareva_09 deletion 2 YBL019W 184356 185918 1562 Koszul_51 interchromosomal 8 YHR014W-YHR015W 132915 134547 1632 Koszul_16 intra duplication 15 YOR380W 1051288 1052928 1640 Chen_25 translocations in rad27 mutant 15 YOL013C 301381 303036 1655 Koszul_10 intra duplication 15 YOR372C 1034805 1036469 1664 Payen_11 duplication 15 YOR372C 1034805 1036469 1664 Chen_07 translocations in rfa1-t33 mutant 7 YGL064C 381526 383211 1685 Argueso_07 rearrangement 5 YEL069C 21537 23231 1694 Argueso_08 rearrangement 4 YDL245C 11657 13360 1703 Argueso_06 rearrangement 15 YOL156W 25272 26975 1703 Dunham_03 interchromosomal 4 HXT6 1159603 1161315 1712 Degtyareva_03 duplication 2 YBL020W 182404 184128 1724 Argueso_38 rearrangement 7 YGR217W-YGR218W 930818 932544 1726 Huang_02 deletion 5 YEL071W-YEL070W 17845 19589 1744 Koszul_55 interchromosomal 11 YKL128C-YKL129W 201415 203185 1770 Chen_10 translocations in rfa1-t33 mutant 5 YEL063C 31694 33466 1772 Chen_36 telo addition in mre11 mutant 5 YEL063C 31694 33466 1772 Payen_13 duplication 15 YOR324C 923229 925037 1808 Koszul_06 intra duplication 15 YOR370C 1029181 1030992 1811 Payen_01 duplication 15 YOR370C 1029181 1030992 1811 Gresham_21 translocation 6 YFL002C 145109 146929 1820 Maxwell_01 chimeric pseudogenes 2 BAP2 373858 375687 1829 Chen_09 translocations in rfa1-t33 mutant 7 YGR289C 1073970 1075820 1850 James_06 rearrangements 8 YHR166C 437172 439052 1880 Schacherer_12 deletion 8 YHR171W 445713 447605 1892 Huang_03 translocation 5 YEL060C 40046 41953 1907 Schacherer_10 deletion 14 YNL299W 66517 68445 1928 Gresham_02 amplification 2 YBR292C-YBR293W 785069 787001 1932 Gresham_07 amplification 2 YBR292C-YBR293W 785069 787001 1932 Koszul_59 interchromosomal 15 YOR273C 834451 836430 1979 VanHulle_04 translocation 5 YER132C-YER133W 430445 432491 2046 Argueso_35 rearrangement 7 YGL205W-YGL203C 110408 112479 2071 VanHulle_08 translocation 13 YMR271C-YMR272C 807547 809622 2075 Schacherer_04 duplication 13 YMR186W 632354 634471 2117 Schacherer_09 deletion 13 YMR186W 632354 634471 2117 Schacherer_16 deletion 13 YMR186 632354 634471 2117 Argueso_18 deletion 1 YAL064W-YAL063C 21852 24001 2149 Argueso_28 amplification 4 YDR349C-YDR350C 1174171 1176333 2162 Schacherer_08 deletion 7 YGL205W 108162 110408 2246 James_03 rearrangements 5 YER162C 500625 502889 2264 Koszul_41 intra duplication 15 YOR267C 822587 824866 2279 Payen_12 duplication 15 YOR267C 822587 824866 2279 Payen_17 duplication 15 YOR316C-A-YOR317W 907032 909340 2308 Payen_02 duplication 15 YOR234C-YOR236W 778556 780907 2351 Argueso_43 rearrangement 10 YJL046W-YJL045W 353610 356019 2409 Lemoine2008_07 interstitial deletion 3 MATalpha 198667 201173 2506 Chen_23 translocations in rad27 mutant 6 YFR002W 150011 152530 2519 Argueso_44 rearrangement 10 YJR055W-YJR056C 539259 541785 2526 Dunham_06 intrachromosomal 14 YNL017C, YNL018C 599937 602477 2540 Argueso_09 interstital deletion 6 YFR038W 229367 231928 2561 Argueso_01 interstital deletion 12 YLR155C-YLR157C 470406 472970 2564 Argueso_02 interstital deletion 12 YLR158C-YLR160C 483638 486202 2564 Gresham_01 amplification 2 YBR294W 789230 791809 2579 Gresham_05 amplification 2 YBR294W 789230 791809 2579 Koszul_42 intra duplication 15 YOR329C 936728 939346 2618 Lemoine2008_08 interstitial deletion 3 HMR 292385 295031 2646 James_11 rearrangements 16 YPR160W 861302 864010 2708 Gresham_06 amplification 2 YBR289W 779663 782380 2717 Lemoine2008_16 translocation 13 YMR247C-YMR250W 768038 770800 2762 Lemoine_02 inter/intrachromosomal 3 YCR027C, YCR028C 167995 170882 2887 Koszul_60 interchromosomal 3 YCR027C-YCR028C 167995 170882 2887 Lemoine2008_01 translocation 3 YCR027C, YCR028C 167995 170882 2887 VanHulle_12 translocation 3 YCR027C, YCR028C 167995 170882 2887 Argueso_04 interstital deletion 3 YCR027C, YCR028C 167995 170882 2887 Argueso_26 amplification, deletion 3 YCR027C-YCR028C 167995 170882 2887 Degtyareva_06 duplication 2 YBL005W 217473 220403 2930 Chen_47 inversion in mre11 mutant 5 YEL061C 36535 39537 3002 Chen_27 translocations in rad27 mutant 5 YER114C 390586 393708 3122 Schacherer_07 duplication 12 YLR249W 636782 639916 3134 Tourrette_05 recip translocation 12 YEF3 636782 639916 3134 Schacherer_11 deletion 2 YBL076C 81041 84259 3218 Argueso_51 deletion 12 YLR154C-RDN 448315 451576 3261 Gresham_10 translocation 2 YBL101C 24946 28299 3353 Degtyareva_01 duplication 2 YBL015W-YBL014C 195705 199067 3362 Degtyareva_05 duplication 2 YBL015W-YBL014C 195705 199067 3362 Degtyareva_15 duplication 2 YBL015W-YBL014C 195705 199067 3362 Lemoine2008_11 translocation 2 YBL015W-YBL014C 195705 199067 3362 Argueso_21 rearrangement 2 YBL015W-YBL014C 195705 199067 3362 Payen_10 duplication 15 YOR304W 884512 887874 3362 Koszul_53 interchromosomal 10 YJR090C 590865 594320 3455 Argueso_03 interstital deletion 11 YKR102W 645994 649503 3509 Tourrette_01 deletion 10 NET1 295240 298809 3569 Lemoine2008_14 isochromosome 3 HMR-YCR098C 295031 298602 3571 VanHulle_02 translocation 3 YCR005C-YCR007C 122326 126009 3683 Koszul_19 intra duplication 15 YOR227W 762826 766566 3740 Payen_03 duplication 15 YOR330C 939618 943382 3764 Chen_15 deletion in rfa1-t33 mutant 5 YEL077C 264 4097 3833 Hwang_02 nonrecip translocation 6 YFR055W-YFR057W 265213 269048 3835 Hwang_03 nonrecip translocation 11 YKL218C-YKL271W 18339 22234 3895 Argueso_27 amplification, deletion 3 YCR018C-YCR019W 148901 152835 3934 Argueso_19 rearrangement 1 YAR023C-YAR027W 179818 183764 3946 Dunham_05 intrachromosomal 14 AQR1, SUN4 501516 505485 3969 Dunham_07 tandem duplication 14 CIT1, FUN34 629624 633858 4234 Chen_40 translocations in mre11 mutant 4 YDL112W 258915 263225 4310 Lemoine2008_03 translocation 1 YAR023C-YAR027W 179279 183764 4485 Admire_01 translocation 7 ERV14, YGL050 401290 405779 4489 Koszul_01 intra duplication 15 YOR153W 619841 624376 4535 Argueso_16 deletion 9 YIL173W 11492 16141 4649 Koszul_44 intra tandem duplication 15 YOR328W 931800 936494 4694 Lemoine_01 inter/intrachromosomal 3 YCR018C, YCR019W 148901 153926 5025 Lemoine2008_04 translocation 3 YCR018C, YCR019W 148901 153926 5025 VanHulle_13 translocation 3 YCR018C, YCR019W 148901 153926 5025 Argueso_05 interstital deletion 3 YCR018C, YCR019W 148901 153926 5025 Dunham_04 intrachromosomal 7 USE1, SRM1 317345 323233 5888 Argueso_49 amplification, deletion 12 YLR157W-D-YLR158W-E 475977 481874 5897 Tourrette_02 deletion 10 URA2 166000 172000 6000 Gresham_17 translocation 10 YJL005W 425151 431231 6080 Argueso_42 interstital deletion 9 YIL083C-YIL079C 204650 210920 6270 Argueso_53 rearrangement 13 YMR044W-YMR047C 356810 363363 6553 Schacherer_15 duplication 10 YJL130C 165720 172364 6644 Maxwell_09 fusion to telo 16 YPR201W-telo 941132 948000 6868 Dunham_11 interchromosomal 15 SNF2, YOR289W 853356 860257 6901 Lemoine2008_02 translocation 16 YPR137W-YPR138C 804076 810980 6904 VanHulle_09 translocation 16 YPR137W-YPR138C 804076 810980 6904 Argueso_17 amplification 1 YAR008W-YAR014C 159794 166743 6949 James_09 rearrangements 11 YKL165C-167C 133726 140696 6970 Argueso_47 amplification 12 YLR035C-YLR036C 214457 221522 7065 Brown_01 tandem duplication 4 HXT6/7 1154210 1161314 7104 Gresham_22 amplification 4 HXT6/7 1154211 1161315 7104 Gresham_23 amplification 4 HXT6/7 1154211 1161315 7104 Degtyareva_02 duplication 2 YBL005W-YBL004W 220403 227639 7236 Degtyareva_08 deletion 2 YBL005W-YBL004W 220403 227639 7236 Degtyareva_12 deletion 2 YBL005W-YBL004W 220403 227639 7236 Argueso_22 rearrangement 2 YBL005W-YBL004W 220403 227639 7236 Argueso_56 rearrangement 14 YNL055C-YNL054W 518846 526087 7241 Dunham_09 intrachromosomal 15 AUS1, YOR012W 349679 356956 7277 Koszul_52 interchromosomal 15 YOR142W-YOR143C 594047 601384 7337 Maxwell_04 insertion 15 YOR142W-YOR143C 594047 601384 7337 Argueso_50 amplification, deletion 12 YLR424W-YLR425W 975518 982891 7373 Lemoine2008_06 translocation 5 YER159C-YER161C 491953 499342 7389 Argueso_33 rearrangement 5 YER159C-YER161C 491953 499342 7389 Argueso_39 deletion 8 YHL009C-YHL008C 85056 92623 7567 VanHulle_14 translocation 5 YER137C-YER138W-A 441815 449470 7655 Argueso_32 rearrangement 5 YER137C-YER138W-A 441815 449470 7655 Admire_02 translocation 7 YGR027W-B, YGR028W 534462 542207 7745 Lemoine2008_20 translocation 12 YLR256W-YLR257W 650925 658828 7903 Argueso_52 deletion 12 YLR256W-YLR257W 650925 658828 7903 Argueso_34 deletion 6 YFL003C-YFL002C 137152 145109 7957 Schacherer2005_05 duplication 10 YJL130C 164720 172749 8029 Argueso_55 amplification 14 YNL036W-YNL035C 560480 568523 8043 Argueso_58 amplification 16 YPL258C-YPL257W 55153 63279 8126 VanHulle_05 translocation 10 YJL115W-YJL112W 197124 205301 8177 Argueso_41 rearrangement 8 YHR214W-YHR214C-D 542262 550648 8386 Maxwell_05 conservative translocation 2 YBL101W-C-YBL100C 28546 36986 8440 Argueso_29 amplification 4 YDR098C-YDR099W 645033 653605 8572 Koszul_22 intra duplication 15 YOR343C-YOR344C 968471 977191 8720 Lemoine2008_22 translocation 5 YER137C-YER139C 441815 450558 8743 Lemoine_03 duplication to telo/ interchromosomal 2 YBR011C, YBR013C 257973 266725 8752 Degtyareva_17 duplication 2 YBR011C-YBR014C 257973 266725 8752 Lemoine2008_27 translocation 2 YBR011C-YBR014C 257973 266725 8752 Argueso_23 rearrangement 2 YBR011C-YBR014C 257973 266725 8752 James_04 rearrangements 6 YFL052W-054C 20847 29629 8782 VanHulle_01 translocation 3 YCL024W-YCL018W 82275 91324 9049 Argueso_24 rearrangement 3 YCL024W-YCL018W 82275 91324 9049 Argueso_54 rearrangement 13 YMR049C-YMR052W 370516 379585 9069 Maxwell_06 conservative translocation 3 YCL024W-YCL018W 82085 91324 9239 Maxwell_08 translocation 4 YDR098C-YDR099W 644176 653605 9429 Payen_09 duplication 15 YOR342C-YOR344C 967622 977191 9569 Argueso_57 amplification 15 YOR342C-YOR344C 967622 977191 9569 Umezu_05 translocation/deletion 3 YCR005C-YCR009C 120944 130743 9799 Umezu_04 translocation/deletion 3 YCR026C:YCR027C - YCR030C 166335 176434 10099 Argueso_40 amplification 8 YHR211W-YHR212W-A 528619 538742 10123 Umezu_01 translocation/deletion 3 YCR037C- YCR042C 194410 205393 10983 Argueso_46 deletion 10 YJR025C-YJR030C 471664 483952 12288 Dunham_10 intrachromosomal 15 YOR192C, YOR193W 698769 711577 12808 Umezu_02 translocation/deletion 3 YCR014C:YCR015C - YCR019W 140931 153926 12995 Lemoine_04 duplication to telo/ interchromosomal 4 YDR209C, YDR211W 871447 884725 13278 Schacherer2004_02 duplication 4 YDR210W-YDR211W 871299 884725 13426 Schacherer2004_01 duplication 16 YPR158W-YPR159W 844016 857579 13563 VanHulle_11 translocation 16 YPR158W-YPR159W 844016 857579 13563 Huang_04 translocation 16 YPR158W-YPR159W 844016 857579 13563 Argueso_37 rearrangement 7 YGR038W-YGR040W 561354 575402 14048 Argueso_30 rearrangement 4 YDR208W-YDR211W 870561 884725 14164 Lemoine_06 duplication to telo/ interchromosomal 16 YPR158W, YPR159W 843258 857579 14321 Lemoine2008_18 translocation 4 YDR261C-YDR262W 979206 993949 14743 Lemoine2008_10 translocation 10 YJR025C-YJR031C 471664 486579 14915 Argueso_31 rearrangement 4 YDR261C-YDR262W 977518 993131 15613 Dunham_01 interchromosomal 4 YDR209C, GCD6 871033 886862 15829