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Table 1. Primers used for RT-PCR analysis of murine 22q11 orthologues, as well as primers used for human 22q11 genes, indicated in 5'–3' order

Mouse

Gene

Primers

Amplicon size

Forward

Reverse

cDNA

Genomic

β-actin

gatatcgctgcgctggtcgtc

tggcgtgagggagagcatagc

514

>1,000

GAPDH

ctgacgtgccgcctggagaaa

gttgggggccgagttgggatagg

348

348

ARVCF

gagggcccgccatcttgagc

caggccccgaggttacttgagg

538

538

BCR

gagcgccggggtatggaggag

gtgatgggctggctggggttag

455

>3,000

CDC45L

cctcggacgtggatgccttgtg

cctgcgctgcctcctcttcctg

455

5,947

CDCrel-1

gcaccgcaagtccgtcaag

gggcaccaggcagtcagc

487

1,021

COMT

gctggggcttggtggctattggt

ggtgccccgatgaggatggaaact

418

1,099

COMT-MB

gcgcggccttgacgagatgc

ggtgccccgatgaggatggaaact

501

15,575

CRKL

ccatccccgagcccaacaccat

gtgcgggcactccaccactgct

514

16,619

CTP

ctgcgtgcggcaaactgtcc

ggccctgcatcctggtcttg

545

1,278

DGCR1/ES2

cggcacgcgtggctctacc

ggggctctcggatccttctactcg

474

2,757

DGCR2

catcctctcgctgctgcttttcat

ccccctggcggtgcttctgta

537

2,505

DGCR6

gtcctgccggccccacaactt

ggcccttcccctccaaatctga

457

1,669

DGCR8

tgccccatgaacagtctccaccac

ccccataggcctaccccattacca

439

439

E2F6

agtgaagaggccccggtttgatgtgt

aatgggtcctttggtgctcctaata

520

>700

GGT

cagctccgagcccgcatcact

ccggggctcctccacagctc

453

795

GPIbb

tgccgcccgggcttctggac

tgggaggttgggcaagggtagagg

523

523

GSCL

gcgaccctgccctttctccatc

ccactttgcccggcggttcttga

484

1,274

HIRA

aataattctggccccactgctca

ctgctgttgctgtctccgctggta

504

9,253

HTF9c

ctgcgcccccactatgtcaaaaag

ccagggtagcagggcacgattagt

537

953

NLVCF

gtgtgctgcgcgggctctg

tctcgaaggggaataggctggta

497

4,062

NoGoR

tctgccggaaacgccctcaag

cgccacccccggaaccctgtaaac

531

531

PCQAP

gtcgccggtttgaggaggatgag

ggcggcgtgagatctttagccag

436

1,264

ProDH2

agccgcctgaccctggagatgc

cacggcgggacaggtaagggagta

523

5,239

RanBP1

gacccccagttcgagccaatagtt

ttccagcttctcggccaccttttc

483

7,225

Stk22a

tcatggggataaacttgggagagg

cttgggctggtaggggatgc

548

548

Stk22b

agtgggcgcatcgtcctca

tcctgtcttcattctcgggtgtca

502

502

T10

cgcccgtggtagaggtgaacttgt

ataggtggcacagcggacacacac

451

8,308

Tbx1

accgcacccccaacctatgaaga

gcgggctggccaagtccta

451

3,693

ThioR2

ggagccctggaatatggaatcaca

ggccgcccctcagcaacatc

497

>20,000

TMVCF

ctggaccacaacatcgtgac

gtacttgaccgggaagctga

495

495

Ufd1L

caactcagccggctcaacattacc

agaaccagagaaggcacggaagc

531

8,419

WDVCF

cagggaagggcagcgacgaggtt

ccccgcagcaagcaagccatcag

539

19,985

zDHHC8

ctggcgccccggtatgtggtg

ggggagggcgggtagggaggac

506

2,112

HoxA13

ctacttcggcagcggctactaccc

acgcgcttctttctccccctccta

459

>1,000

Lhx7

acccgctgttcccgctgtgg

gggggccgaggaagaatggttt

480

>10,000

Pax7

ctcccgtcagctccgtgtttctca

atgtccgggtagtgggtcctctcg

510

>40,000

Tbx5

cacagccccttcagcagcgagac

aggggccccgaggtgaaatgag

494

>10,000

GAP43

gaagaccccgaggctgaccaagaac

acagggccacacgcaccagatc

349

349

SynPhy

ggttccggagtgggcaggtttg

ggggcgtggggtggaatcag

356

356

Human

β-actin

gatatcgccgcgctcgtcgtc

cgcggttggccttggggttc

340

474

CDCrel-1

ttgggggatcaggagcgaagttgg

gccgggctgtggagaaggggtgta

391

391

COMT

accaggggcgaggctcatcaccat

ggccgtccaccacctccctgtatt

377

5,019

HIRA

cagggccgcacctccaactc

aggttctgcccgatgactggtagc

326

22,512

NoGoR

caccggcccttaccatcccatc

agtggctgcgggtgcggttctt

350

350

ProDH2

ggcggtgctgcaggaaagtgtc

atggccggctggaagtaggtctg

333

2,883

RanBP1

ggcggccgccaaggacactc

gtcggcgaagtcagcgtgggtg

388

7,735

Stk22B

ctgagcgcctcaagttcaatgtgg

tgggctggtaggggatgctctg

492

492

T10

agggccctgtggtttgcgtgtta

gagagtcgcccttctgccttgttc

356

356

Tbx1

caaggcgccggtgaagaagaac

gtggaagcggggctggtatctg

436

3,839

Ufd1L

tgtggcgtgctggagtttgtgg

ttctttgtagcccaggggagcatc

360

14,855

Znf74

ccttcgccagctctttcctctcag

gcaccgccttcagctcccattct

340

10,075