|
Table 1. Primers used for RT-PCR analysis of murine 22q11 orthologues, as well as primers used for human 22q11 genes, indicated in 5'–3' order
Mouse |
||||
Gene |
Primers |
Amplicon size |
||
Forward |
Reverse |
cDNA |
Genomic |
|
β-actin |
gatatcgctgcgctggtcgtc |
tggcgtgagggagagcatagc |
514 |
>1,000 |
GAPDH |
ctgacgtgccgcctggagaaa |
gttgggggccgagttgggatagg |
348 |
348 |
ARVCF |
gagggcccgccatcttgagc |
caggccccgaggttacttgagg |
538 |
538 |
BCR |
gagcgccggggtatggaggag |
gtgatgggctggctggggttag |
455 |
>3,000 |
CDC45L |
cctcggacgtggatgccttgtg |
cctgcgctgcctcctcttcctg |
455 |
5,947 |
CDCrel-1 |
gcaccgcaagtccgtcaag |
gggcaccaggcagtcagc |
487 |
1,021 |
COMT |
gctggggcttggtggctattggt |
ggtgccccgatgaggatggaaact |
418 |
1,099 |
COMT-MB |
gcgcggccttgacgagatgc |
ggtgccccgatgaggatggaaact |
501 |
15,575 |
CRKL |
ccatccccgagcccaacaccat |
gtgcgggcactccaccactgct |
514 |
16,619 |
CTP |
ctgcgtgcggcaaactgtcc |
ggccctgcatcctggtcttg |
545 |
1,278 |
DGCR1/ES2 |
cggcacgcgtggctctacc |
ggggctctcggatccttctactcg |
474 |
2,757 |
DGCR2 |
catcctctcgctgctgcttttcat |
ccccctggcggtgcttctgta |
537 |
2,505 |
DGCR6 |
gtcctgccggccccacaactt |
ggcccttcccctccaaatctga |
457 |
1,669 |
DGCR8 |
tgccccatgaacagtctccaccac |
ccccataggcctaccccattacca |
439 |
439 |
E2F6 |
agtgaagaggccccggtttgatgtgt |
aatgggtcctttggtgctcctaata |
520 |
>700 |
GGT |
cagctccgagcccgcatcact |
ccggggctcctccacagctc |
453 |
795 |
GPIbb |
tgccgcccgggcttctggac |
tgggaggttgggcaagggtagagg |
523 |
523 |
GSCL |
gcgaccctgccctttctccatc |
ccactttgcccggcggttcttga |
484 |
1,274 |
HIRA |
aataattctggccccactgctca |
ctgctgttgctgtctccgctggta |
504 |
9,253 |
HTF9c |
ctgcgcccccactatgtcaaaaag |
ccagggtagcagggcacgattagt |
537 |
953 |
NLVCF |
gtgtgctgcgcgggctctg |
tctcgaaggggaataggctggta |
497 |
4,062 |
NoGoR |
tctgccggaaacgccctcaag |
cgccacccccggaaccctgtaaac |
531 |
531 |
PCQAP |
gtcgccggtttgaggaggatgag |
ggcggcgtgagatctttagccag |
436 |
1,264 |
ProDH2 |
agccgcctgaccctggagatgc |
cacggcgggacaggtaagggagta |
523 |
5,239 |
RanBP1 |
gacccccagttcgagccaatagtt |
ttccagcttctcggccaccttttc |
483 |
7,225 |
Stk22a |
tcatggggataaacttgggagagg |
cttgggctggtaggggatgc |
548 |
548 |
Stk22b |
agtgggcgcatcgtcctca |
tcctgtcttcattctcgggtgtca |
502 |
502 |
T10 |
cgcccgtggtagaggtgaacttgt |
ataggtggcacagcggacacacac |
451 |
8,308 |
Tbx1 |
accgcacccccaacctatgaaga |
gcgggctggccaagtccta |
451 |
3,693 |
ThioR2 |
ggagccctggaatatggaatcaca |
ggccgcccctcagcaacatc |
497 |
>20,000 |
TMVCF |
ctggaccacaacatcgtgac |
gtacttgaccgggaagctga |
495 |
495 |
Ufd1L |
caactcagccggctcaacattacc |
agaaccagagaaggcacggaagc |
531 |
8,419 |
WDVCF |
cagggaagggcagcgacgaggtt |
ccccgcagcaagcaagccatcag |
539 |
19,985 |
zDHHC8 |
ctggcgccccggtatgtggtg |
ggggagggcgggtagggaggac |
506 |
2,112 |
HoxA13 |
ctacttcggcagcggctactaccc |
acgcgcttctttctccccctccta |
459 |
>1,000 |
Lhx7 |
acccgctgttcccgctgtgg |
gggggccgaggaagaatggttt |
480 |
>10,000 |
Pax7 |
ctcccgtcagctccgtgtttctca |
atgtccgggtagtgggtcctctcg |
510 |
>40,000 |
Tbx5 |
cacagccccttcagcagcgagac |
aggggccccgaggtgaaatgag |
494 |
>10,000 |
GAP43 |
gaagaccccgaggctgaccaagaac |
acagggccacacgcaccagatc |
349 |
349 |
SynPhy |
ggttccggagtgggcaggtttg |
ggggcgtggggtggaatcag |
356 |
356 |
Human |
||||
β-actin |
gatatcgccgcgctcgtcgtc |
cgcggttggccttggggttc |
340 |
474 |
CDCrel-1 |
ttgggggatcaggagcgaagttgg |
gccgggctgtggagaaggggtgta |
391 |
391 |
COMT |
accaggggcgaggctcatcaccat |
ggccgtccaccacctccctgtatt |
377 |
5,019 |
HIRA |
cagggccgcacctccaactc |
aggttctgcccgatgactggtagc |
326 |
22,512 |
NoGoR |
caccggcccttaccatcccatc |
agtggctgcgggtgcggttctt |
350 |
350 |
ProDH2 |
ggcggtgctgcaggaaagtgtc |
atggccggctggaagtaggtctg |
333 |
2,883 |
RanBP1 |
ggcggccgccaaggacactc |
gtcggcgaagtcagcgtgggtg |
388 |
7,735 |
Stk22B |
ctgagcgcctcaagttcaatgtgg |
tgggctggtaggggatgctctg |
492 |
492 |
T10 |
agggccctgtggtttgcgtgtta |
gagagtcgcccttctgccttgttc |
356 |
356 |
Tbx1 |
caaggcgccggtgaagaagaac |
gtggaagcggggctggtatctg |
436 |
3,839 |
Ufd1L |
tgtggcgtgctggagtttgtgg |
ttctttgtagcccaggggagcatc |
360 |
14,855 |
Znf74 |
ccttcgccagctctttcctctcag |
gcaccgccttcagctcccattct |
340 |
10,075 |