Table S6. Taxonomic report for PSI-BLAST search on Archaea and Bacteria at RefSeq


Profile (PSSM): based on PHI-Blast (see Table 1 and Table S2), two iterations

e-value <= 0.00001


1) Bacteria

Index

2) Archaea

Index

1) Bacteria


2) Archaea

Lineage Report
Euryarchaeota  [euryarchaeotes]
. Methanosarcina [euryarchaeotes]
. . Methanosarcina acetivorans C2A -----  436 38 hits [euryarchaeotes]  cell surface protein [Methanosarcina acetivorans C2A]
. . Methanosarcina barkeri str. Fusaro .  429 27 hits [euryarchaeotes]  cell surface protein [Methanosarcina barkeri str. Fusaro]
. Methanococcus vannielii SB -----------  251  8 hits [euryarchaeotes]  cell surface protein [Methanococcus vannielii SB]
. Methanococcus maripaludis C7 .........  250 14 hits [euryarchaeotes]  TPR repeat-containing protein [Methanococcus maripaludis C7]
. Methanococcus maripaludis C6 .........  135 16 hits [euryarchaeotes]  hypothetical protein MmarC6_0234 [Methanococcus maripaludis

Organism Report
  Methanosarcina acetivorans C2A [euryarchaeotes] taxid 188937
 ref|NP_619153.1| cell surface protein [Methanosarcina acet...     436  3e-122
 ref|NP_619156.1| cell surface protein [Methanosarcina acet...     392  7e-109
 ref|NP_619149.1| cell surface protein [Methanosarcina acet...     303  2e-82

  Methanosarcina barkeri str. Fusaro [euryarchaeotes] taxid 269797
 ref|YP_305509.1| cell surface protein [Methanosarcina bark...     429  4e-120
 ref|YP_305504.1| cell surface protein [Methanosarcina bark...     299  5e-81

  Methanococcus vannielii SB [euryarchaeotes] taxid 406327
 ref|YP_001322799.1| cell surface protein [Methanococcus va...     251  1e-66
 ref|YP_001322745.1| hypothetical protein Mevan_0223 [Metha...      49  8e-06

  Methanococcus maripaludis C7 [euryarchaeotes] taxid 426368
 ref|YP_001330886.1| TPR repeat-containing protein [Methano...     250  3e-66
 ref|YP_001329237.1| hypothetical protein MmarC7_0013 [Meth...     145  1e-34

  Methanococcus maripaludis C6 [euryarchaeotes] taxid 444158
 ref|YP_001548287.1| hypothetical protein MmarC6_0234 [Meth...     135  1e-31
 ref|YP_001548288.1| hypothetical protein MmarC6_0235 [Meth...     115  2e-25


Taxonomy Report
Euryarchaeota ..........................   103 hits    5 orgs [root; cellular organisms; Archaea]
. Methanosarcina .......................    65 hits    2 orgs [Methanomicrobia; Methanosarcinales; Methanosarcinaceae]
. . Methanosarcina acetivorans C2A .....    38 hits    1 orgs [Methanosarcina acetivorans]
. . Methanosarcina barkeri str. Fusaro .    27 hits    1 orgs [Methanosarcina barkeri]
. Methanococcus ........................    38 hits    3 orgs [Methanococci; Methanococcales; Methanococcaceae]
. . Methanococcus vannielii SB .........     8 hits    1 orgs [Methanococcus vannielii]
. . Methanococcus maripaludis ..........    30 hits    2 orgs 
. . . Methanococcus maripaludis C7 .....    14 hits    1 orgs 
. . . Methanococcus maripaludis C6 .....    16 hits    1 orgs