Improved detection of differentially expressed genes in microarray experiments through multiple scanning and image integration -- Data Supplement

RT direct labelling	1 scan		2 scans		4 scans		6 scans		8 scans		10 scans
RT direct labelling	Mean	Max	Mean	Max	Mean	Max	Mean	Max	Mean	Max	Mean	Max
Over	199	199	199	221₁₁	215₈	214_7.54	211₆	233₁₇	229₁₅	187 _?₆	207₄	204₂
FP	-	-	26₁₃	19₁₀	21₁₁	21₁₁	24₁₂	19₁₀	20₁₀	30₁₅	24₁₂	24₁₂
CFP			-	-	19	15	18	13	15	13	16	14
NFP			26	19	2	6	3	2	1	7	2	2
FN	-	-	18₉	41₂₁	37₁₉	36₁₈	36₁₈	53₂₇	50₂₅	18₉	34₁₇	29₁₅
CFN			-	-	15	20	22	20	24	17	34	15
NFN			18	41	10	5	4	10	4	0	0	3
Under	32	32	33₃	37₁₅	43₃	42₃₁	44₃₇	47₄₆	51₅₉	44₃₇	48₅₀	51₅₉
FP	-	-	6₁₉	7₂₂	2₆	5₁₆	2₆	3₉	4₁₃	3₉	4₁₃	1₃
CFP			-	-	2	4	2	3	2	2	2	1
NFP			6	7	0	1	1	0	1	0	1	1
FN	-	-	7₂₂	12₃₈	13₄₁	15₄₇	14₄₄	18₅₆	23₇₂	15₄₇	20₆₃	20₆₃
CFN			-	-	4	7	10	9	13	11	17	14
NFN			7	12	9	8	3	8	7	3	2	3
TSA	1 scan		2 scans		4 scans		6 scans		8 scans		10 scans
TSA	Mean	Max	Mean	Max	Mean	Max	Mean	Max	Mean	Max	Mean	Max
Over	148	148	258₁₇₄	238₁₆₁	302₂₀₄	279₁₈₉	331₂₂₄	284₁₉₂	346₂₃₄	305₂₀₆	355₂₄₀	317₂₁₄
FP	-	-	0₀	0₀	0₀	0₀	1₁	1₁	0₀	1₁	0₀	0₀
CFP	-	-	-	-	0	0	0	0	0	1	0	0
NFP	-	-	0	0	0	0	1	1	0	0	0	0
FN	-	-	110₇₄	90₆₁	154₁₀₄	131₈₉	184₁₂₄	137₉₃	198₁₃₄	158₁₀₇	207₁₄₀	169₁₁₄
CFN	-	-	-	-	107	85	152	117	175	131	189	150
NFN	-	-	110	90	47	46	31	17	21	16	14	14
Under	107	107	280₂₆₂	262₂₄₅	319₂₉₈	303₂₈₃	335₃₁₃	296₂₇₇	368₃₄₄	317₂₉₆	360₃₃₆	349₃₂₆
FP	-	-	2₂	2₂	2₂	2₂	1₁	2₂	2₂	2₂	2₂	2₂
CFP	-	-	-	-	2	2	0	2	1	2	1	2
NFP	-	-	2	2	0	0	0	0	0	0	0	0
FN	-	-	175₁₆₄	157₁₄₇	214₂₀₀	198₁₈₅	229₂₁₄	191₁₇₉	263₂₄₆	212₁₉₈	255₂₃₈	244₂₂₈
CFN	-	-	-	-	170	149	203	173	223	179	241	197
NFN	-	-	175	157	44	49	22	17	32	23	6	21

RT direct labelling

TSA