Table S5. Predicted enhancers in HeLa. Coordinates are in hg17. ENCODE region Position Chr ENr122 59459451 chr18 ENr122 59477151 chr18 ENr122 59501151 chr18 ENr122 59544751 chr18 ENr122 59556151 chr18 ENr122 59593551 chr18 ENr122 59637351 chr18 ENr122 59685951 chr18 ENr122 59700751 chr18 ENr132 112354915 chr13 ENr132 112414315 chr13 ENr132 112427415 chr13 ENr132 112575215 chr13 ENr132 112786815 chr13 ENr334 41505745 chr6 ENr334 41520245 chr6 ENr334 41540745 chr6 ENr334 41547545 chr6 ENr334 41565045 chr6 ENr334 41579445 chr6 ENr334 41581145 chr6 ENr334 41607245 chr6 ENr334 41654545 chr6 ENr334 41701445 chr6 ENr334 41774545 chr6 ENr334 41781945 chr6 ENr334 41788545 chr6 ENr334 41790845 chr6 ENr334 41799145 chr6 ENr334 41807745 chr6 ENr334 41843245 chr6 ENm002 131437364 chr5 ENm002 131450064 chr5 ENm002 131458364 chr5 ENm002 131467364 chr5 ENm002 131578864 chr5 ENm002 131589264 chr5 ENm002 131618364 chr5 ENm002 131624764 chr5 ENm002 131629264 chr5 ENm002 131637064 chr5 ENm002 131728564 chr5 ENm002 131751464 chr5 ENm002 131774264 chr5 ENm002 131776564 chr5 ENm002 131786464 chr5 ENm002 131809664 chr5 ENm002 131822964 chr5 ENm002 132040864 chr5 ENm010 26878511 chr7 ENm010 26885311 chr7 ENm010 26894111 chr7 ENm010 26911111 chr7 ENm010 26948511 chr7 ENm010 26990311 chr7 ENm010 27003411 chr7 ENm010 27007011 chr7 ENm010 27159511 chr7 ENr223 73798003 chr6 ENr223 73829203 chr6 ENr223 73846303 chr6 ENr121 118454354 chr2 ENm009 5258246 chr11 ENm009 5321746 chr11 ENm009 5324146 chr11 ENm009 5345246 chr11 ENm009 5583846 chr11 ENm009 5715146 chr11 ENr331 220132001 chr2 ENr331 220136601 chr2 ENr331 220143701 chr2 ENr331 220151001 chr2 ENr331 220201201 chr2 ENr331 220211601 chr2 ENr331 220335901 chr2 ENr331 220376101 chr2 ENr331 220379401 chr2 ENr331 220397601 chr2 ENr331 220419301 chr2 ENr322 98489974 chr14 ENr322 98491674 chr14 ENr322 98572474 chr14 ENr322 98635574 chr14 ENr322 98789374 chr14 ENr322 98808674 chr14 ENr322 98915974 chr14 ENr322 98917974 chr14 ENr133 39252317 chr21 ENr133 39274517 chr21 ENr133 39280817 chr21 ENr133 39287317 chr21 ENr133 39300417 chr21 ENr133 39309117 chr21 ENr133 39315817 chr21 ENr133 39341517 chr21 ENr133 39388817 chr21 ENr133 39408917 chr21 ENr133 39419617 chr21 ENr133 39431917 chr21 ENr133 39469317 chr21 ENr131 234372075 chr2 ENr131 234381275 chr2 ENr131 234390375 chr2 ENr131 234398375 chr2 ENr131 234436775 chr2 ENr131 234448075 chr2 ENr131 234454875 chr2 ENr131 234507975 chr2 ENr131 234523475 chr2 ENr131 234530675 chr2 ENr131 234665375 chr2 ENr131 234672475 chr2 ENr131 234694875 chr2 ENm004 30349858 chr22 ENm004 30367558 chr22 ENm004 30550558 chr22 ENm004 30671758 chr22 ENm004 30673558 chr22 ENm004 31253158 chr22 ENm004 31260158 chr22 ENm004 31277358 chr22 ENm004 31304958 chr22 ENm004 31312458 chr22 ENm004 31337458 chr22 ENm004 31343758 chr22 ENm004 31370458 chr22 ENm004 31396758 chr22 ENm004 31404558 chr22 ENm004 31416858 chr22 ENm004 31418458 chr22 ENm004 31481958 chr22 ENm004 31524658 chr22 ENm004 31531258 chr22 ENm004 31716658 chr22 ENm013 89453190 chr7 ENm013 89485890 chr7 ENm013 89748290 chr7 ENm013 89804390 chr7 ENm013 89853390 chr7 ENm013 89881290 chr7 ENm013 89899090 chr7 ENm013 90090790 chr7 ENm013 90098890 chr7 ENm013 90439190 chr7 ENm013 90457190 chr7 ENm013 90515690 chr7 ENm013 90523790 chr7 ENr312 130798248 chr11 ENr312 130805648 chr11 ENr212 141959801 chr5 ENr212 142004601 chr5 ENr212 142058001 chr5 ENr212 142170401 chr5 ENr212 142177101 chr5 ENr212 142180301 chr5 ENr212 142185001 chr5 ENr212 142186801 chr5 ENr212 142188801 chr5 ENr212 142190701 chr5 ENr212 142199801 chr5 ENr212 142217801 chr5 ENr212 142234501 chr5 ENr212 142242801 chr5 ENr212 142285501 chr5 ENr212 142340901 chr5 ENr212 142362501 chr5 ENr212 142369601 chr5 ENr323 108546047 chr6 ENr323 108561947 chr6 ENm012 113701534 chr7 ENm012 113716534 chr7 ENm012 113737434 chr7 ENm012 113739234 chr7 ENm012 113762734 chr7 ENm012 113766234 chr7 ENm012 113769134 chr7 ENm012 113789534 chr7 ENm012 113808734 chr7 ENm012 113818034 chr7 ENm012 113894534 chr7 ENm012 113994134 chr7 ENm012 114024234 chr7 ENm012 114054734 chr7 ENm012 114086434 chr7 ENm012 114098734 chr7 ENm012 114164934 chr7 ENm012 114178734 chr7 ENm012 114213834 chr7 ENm012 114222034 chr7 ENm012 114243734 chr7 ENm012 114321934 chr7 ENm012 114331534 chr7 ENm012 114370334 chr7 ENm012 114465034 chr7 ENr233 41588939 chr15 ENr233 41595439 chr15 ENr233 41682039 chr15 ENr233 41801939 chr15 ENr233 41992139 chr15 ENr113 118678709 chr4 ENr113 118734009 chr4 ENr113 118993809 chr4 ENr113 119004609 chr4 ENr113 119056809 chr4 ENm006 152669595 chrX ENm006 152679995 chrX ENm006 152688795 chrX ENm006 152828995 chrX ENm006 152861795 chrX ENm006 152868795 chrX ENm006 152881795 chrX ENm006 153074095 chrX ENm006 153179095 chrX ENm006 153237795 chrX ENm006 153332495 chrX ENm006 153388495 chrX ENm006 153390395 chrX ENm006 153392895 chrX ENm006 153395995 chrX ENm006 153522195 chrX ENm006 153591495 chrX ENm006 153597595 chrX ENm006 153680095 chrX ENr213 23755982 chr18 ENr213 23798982 chr18 ENr213 23830682 chr18 ENr213 23865682 chr18 ENr213 23873782 chr18 ENr213 23898282 chr18 ENr213 23910082 chr18 ENr213 23921482 chr18 ENr213 23943782 chr18 ENr213 23945882 chr18 ENr213 23947582 chr18 ENr213 23949582 chr18 ENr213 23958482 chr18 ENr213 23962082 chr18 ENr213 23994782 chr18 ENr213 23996582 chr18 ENr213 24005182 chr18 ENr213 24017382 chr18 ENr213 24038182 chr18 ENm008 66451 chr16 ENm008 103851 chr16 ENm008 258151 chr16 ENm008 317551 chr16 ENm008 340651 chr16 ENm008 417751 chr16 ENr112 51897506 chr2 ENr112 51922206 chr2 ENr112 51951606 chr2 ENr112 52057306 chr2 ENr222 132226090 chr6 ENr222 132300690 chr6 ENr222 132315890 chr6 ENr222 132317590 chr6 ENr222 132343890 chr6 ENr222 132416990 chr6 ENr222 132426790 chr6 ENr222 132448190 chr6 ENr222 132485990 chr6 ENr222 132494990 chr6 ENr222 132553290 chr6 ENr222 132562090 chr6 ENr222 132599190 chr6 ENr222 132633790 chr6 ENr222 132696890 chr6 ENr321 118913771 chr8 ENr321 118929271 chr8 ENr321 118944071 chr8 ENr321 119018971 chr8 ENr321 119029471 chr8 ENr321 119057371 chr8 ENr321 119059771 chr8 ENr321 119081271 chr8 ENr321 119091871 chr8 ENr321 119099671 chr8 ENr321 119107171 chr8 ENr321 119113271 chr8 ENr321 119130171 chr8 ENr321 119160871 chr8 ENr321 119169071 chr8 ENr321 119175271 chr8 ENr321 119181071 chr8 ENr321 119291271 chr8 ENm005 32675687 chr21 ENm005 32681087 chr21 ENm005 32736887 chr21 ENm005 32744887 chr21 ENm005 32751387 chr21 ENm005 32758387 chr21 ENm005 32769487 chr21 ENm005 32789487 chr21 ENm005 32810387 chr21 ENm005 32817387 chr21 ENm005 32918887 chr21 ENm005 33102987 chr21 ENm005 33138487 chr21 ENm005 33497487 chr21 ENm005 33581387 chr21 ENm005 33676387 chr21 ENm005 33690187 chr21 ENm005 33699487 chr21 ENm005 33713487 chr21 ENm005 33848087 chr21 ENm005 33952087 chr21 ENm005 33979387 chr21 ENm005 34055187 chr21 ENm005 34094387 chr21 ENm005 34219187 chr21 ENm005 34230787 chr21 ENm005 34242187 chr21 ENm005 34264087 chr21 ENm005 34270287 chr21 ENr311 52994826 chr14 ENr311 53078726 chr14 ENr311 53144926 chr14 ENr311 53252126 chr14 ENr311 53278826 chr14 ENr311 53327526 chr14 ENr311 53330026 chr14 ENr311 53344026 chr14 ENr311 53378926 chr14 ENr311 53388026 chr14 ENr311 53417526 chr14 ENr311 53430726 chr14 ENr111 29585766 chr13 ENr111 29598066 chr13 ENr111 29615266 chr13 ENr111 29773466 chr13 ENr111 29785366 chr13 ENr111 29803766 chr13 ENr111 29810566 chr13 ENr111 29812666 chr13 ENr111 29844166 chr13 ENr111 29881266 chr13 ENr111 29902866 chr13 ENr231 148098184 chr1 ENr231 148156884 chr1 ENr231 148280784 chr1 ENr231 148298284 chr1 ENr231 148321484 chr1 ENr231 148334484 chr1 ENr231 148354884 chr1 ENr231 148360684 chr1 ENr231 148382384 chr1 ENm011 1728342 chr11 ENm011 1739342 chr11 ENm011 1751042 chr11 ENm011 1760642 chr11 ENm011 1806242 chr11 ENm011 1812142 chr11 ENm011 1822842 chr11 ENm011 1841242 chr11 ENm011 2156942 chr11 ENr123 38655227 chr12 ENr123 38666827 chr12 ENr123 38691327 chr12 ENr123 38734027 chr12 ENr123 38736327 chr12 ENr123 38783727 chr12 ENr123 38889327 chr12 ENr123 38906127 chr12 ENr123 38975027 chr12 ENr123 39006027 chr12 ENr333 33315479 chr20 ENr333 33357079 chr20 ENr333 33363379 chr20 ENr333 33370179 chr20 ENr333 33378779 chr20 ENr333 33408679 chr20 ENr333 33438779 chr20 ENr333 33518979 chr20 ENr333 33669179 chr20 ENr333 33784179 chr20 ENr232 128982106 chr9 ENr232 128984206 chr9 ENr232 129009706 chr9 ENr232 129079106 chr9 ENr232 129100406 chr9 ENr232 129120506 chr9 ENr232 129177106 chr9 ENr232 129194206 chr9 ENr232 129249006 chr9 ENr232 129255506 chr9 ENm003 115978066 chr11 ENm003 116333866 chr11 ENm003 116335766 chr11 ENm003 116360666 chr11 ENm003 116386866 chr11 ENm003 116402766 chr11 ENm003 116413966 chr11 ENm003 116421266 chr11 ENm003 116439966 chr11 ENm003 116447866 chr11 ENr332 63972739 chr11 ENr332 64090939 chr11 ENr332 64199539 chr11 ENr332 64367539 chr11 ENr332 64379839 chr11 ENr332 64393639 chr11 ENr221 55901357 chr5 ENr221 55939557 chr5 ENr221 55947757 chr5 ENr221 55955757 chr5 ENr221 55969357 chr5 ENr221 55981457 chr5 ENr221 56029757 chr5 ENr221 56048657 chr5 ENr221 56065557 chr5 ENr221 56336657 chr5 ENr221 56363157 chr5 ENm014 125729357 chr7 ENm014 125808657 chr7 ENm014 125922957 chr7 ENm014 125934757 chr7 ENm014 126051957 chr7 ENm014 126058457 chr7 ENm014 126116357 chr7 ENm014 126121857 chr7 ENm014 126171357 chr7 ENm014 126222257 chr7 ENm014 126671857 chr7 ENm001 115454022 chr7 ENm001 115465922 chr7 ENm001 115493622 chr7 ENm001 115505722 chr7 ENm001 115551122 chr7 ENm001 115564522 chr7 ENm001 115574822 chr7 ENm001 115589122 chr7 ENm001 115598122 chr7 ENm001 115629122 chr7 ENm001 115637722 chr7 ENm001 115658622 chr7 ENm001 115667722 chr7 ENm001 115675322 chr7 ENm001 115677122 chr7 ENm001 115689522 chr7 ENm001 115699722 chr7 ENm001 115711122 chr7 ENm001 115717522 chr7 ENm001 115724522 chr7 ENm001 115726122 chr7 ENm001 115746222 chr7 ENm001 115805022 chr7 ENm001 115811022 chr7 ENm001 115817022 chr7 ENm001 115849422 chr7 ENm001 115866022 chr7 ENm001 115887622 chr7 ENm001 115915022 chr7 ENm001 115922922 chr7 ENm001 115924822 chr7 ENm001 115935822 chr7 ENm001 115941222 chr7 ENm001 115950322 chr7 ENm001 116012922 chr7 ENm001 116032022 chr7 ENm001 116037822 chr7 ENm001 116044622 chr7 ENm001 116070422 chr7 ENm001 116106322 chr7 ENm001 116358022 chr7 ENm001 116359922 chr7 ENm001 116366122 chr7 ENm001 116392522 chr7 ENm001 116493822 chr7 ENm001 116503922 chr7 ENm001 116814822 chr7 ENm001 116822122 chr7 ENm001 116840822 chr7 ENm001 116854022 chr7 ENm001 116879722 chr7 ENm001 116900122 chr7 ENm001 116917522 chr7 ENm001 116938022 chr7 ENm001 117010122 chr7 ENm001 117232322 chr7 ENm007 59037735 chr19 ENm007 59054035 chr19 ENm007 59175035 chr19 ENm007 59185135 chr19 ENm007 59197535 chr19 ENm007 59214435 chr19 ENm007 59404135 chr19 ENm007 59634435 chr19 ENr324 122662300 chrX ENr324 122684300 chrX ENr324 122690100 chrX ENr324 122728600 chrX ENr324 122765000 chrX ENr324 122782500 chrX ENr324 122830700 chrX ENr324 122838400 chrX ENr324 122840300 chrX