Table S8. Predicted enhancers in ES cells. Coordinates are in hg17. ENCODE region Position Chr ENr122 59836351 chr18 ENr122 59902051 chr18 ENr211 25804378 chr16 ENr211 25806278 chr16 ENr211 25844478 chr16 ENr211 25870178 chr16 ENr211 25938978 chr16 ENr211 25969078 chr16 ENr211 25974778 chr16 ENr211 25990278 chr16 ENr211 26052278 chr16 ENr211 26096178 chr16 ENr211 26125178 chr16 ENr211 26138678 chr16 ENr211 26200778 chr16 ENr132 112406515 chr13 ENr132 112415215 chr13 ENr132 112420815 chr13 ENr132 112428615 chr13 ENr132 112437715 chr13 ENr132 112445415 chr13 ENr132 112595115 chr13 ENr132 112604515 chr13 ENr132 112608115 chr13 ENr334 41483345 chr6 ENr334 41518945 chr6 ENr334 41531945 chr6 ENr334 41538545 chr6 ENr334 41547645 chr6 ENr334 41564145 chr6 ENr334 41566045 chr6 ENr334 41570545 chr6 ENr334 41630545 chr6 ENr334 41638445 chr6 ENr334 41646145 chr6 ENr334 41647945 chr6 ENr334 41654745 chr6 ENr334 41660945 chr6 ENr334 41676445 chr6 ENr334 41720245 chr6 ENr334 41756545 chr6 ENr114 55260469 chr10 ENm002 131338564 chr5 ENm002 131365964 chr5 ENm002 131686664 chr5 ENm002 131751064 chr5 ENm002 131801464 chr5 ENm002 131809164 chr5 ENm002 131838364 chr5 ENm002 132118864 chr5 ENm010 26758211 chr7 ENm010 26763611 chr7 ENm010 26843211 chr7 ENm010 27187811 chr7 ENr223 73843903 chr6 ENr223 73965203 chr6 ENr121 118026154 chr2 ENr121 118325054 chr2 ENr121 118494854 chr2 ENm009 4840846 chr11 ENm009 5115546 chr11 ENm009 5597546 chr11 ENm009 5668446 chr11 ENr331 220151101 chr2 ENr331 220176701 chr2 ENr331 220197501 chr2 ENr331 220203801 chr2 ENr331 220211301 chr2 ENr331 220251701 chr2 ENr331 220267801 chr2 ENr331 220361801 chr2 ENr331 220376101 chr2 ENr331 220389101 chr2 ENr331 220391601 chr2 ENr331 220398101 chr2 ENr331 220418401 chr2 ENr331 220592201 chr2 ENr322 98529874 chr14 ENr322 98637574 chr14 ENr322 98669374 chr14 ENr322 98724774 chr14 ENr322 98794674 chr14 ENr322 98800574 chr14 ENr322 98931174 chr14 ENr322 98949574 chr14 ENr133 39275117 chr21 ENr133 39282617 chr21 ENr133 39284817 chr21 ENr133 39316317 chr21 ENr133 39323317 chr21 ENr133 39376217 chr21 ENr133 39431717 chr21 ENr133 39724017 chr21 ENr131 234620175 chr2 ENr131 234665375 chr2 ENm004 30345858 chr22 ENm004 30368358 chr22 ENm004 30588058 chr22 ENm004 30681258 chr22 ENm004 31046458 chr22 ENm004 31057458 chr22 ENm004 31289358 chr22 ENm004 31343558 chr22 ENm004 31524758 chr22 ENm004 31532158 chr22 ENm004 31551258 chr22 ENm004 31707758 chr22 ENm004 31740958 chr22 ENm004 31783758 chr22 ENm004 31814458 chr22 ENm013 89498590 chr7 ENm013 89896790 chr7 ENm013 89983790 chr7 ENm013 89985590 chr7 ENm013 90000390 chr7 ENm013 90038590 chr7 ENm013 90166590 chr7 ENm013 90306590 chr7 ENm013 90317890 chr7 ENm013 90408590 chr7 ENr312 130621648 chr11 ENr312 130650448 chr11 ENr312 130665848 chr11 ENr312 130747548 chr11 ENr312 130783948 chr11 ENr312 130846348 chr11 ENr312 130966248 chr11 ENr312 130992848 chr11 ENr312 131015248 chr11 ENr312 131017148 chr11 ENr312 131037248 chr11 ENr212 141900901 chr5 ENr212 142034401 chr5 ENr212 142044501 chr5 ENr212 142077001 chr5 ENr212 142142901 chr5 ENr212 142157301 chr5 ENr212 142177301 chr5 ENr212 142186401 chr5 ENr212 142206301 chr5 ENr212 142208401 chr5 ENr212 142217101 chr5 ENr212 142223201 chr5 ENr212 142225001 chr5 ENr212 142232701 chr5 ENr212 142258701 chr5 ENr212 142342401 chr5 ENr323 108415547 chr6 ENr323 108418547 chr6 ENr323 108562247 chr6 ENm012 113648834 chr7 ENm012 113864434 chr7 ENm012 113893234 chr7 ENm012 113923534 chr7 ENm012 113943634 chr7 ENm012 114056534 chr7 ENm012 114058634 chr7 ENm012 114077434 chr7 ENm012 114164634 chr7 ENm012 114179334 chr7 ENm012 114206534 chr7 ENm012 114220634 chr7 ENm012 114236934 chr7 ENm012 114242634 chr7 ENm012 114266434 chr7 ENr233 41596239 chr15 ENr233 41610339 chr15 ENr233 42000139 chr15 ENr233 42007639 chr15 ENr233 42009339 chr15 ENr113 118877609 chr4 ENr113 119004909 chr4 ENm006 152649295 chrX ENm006 152664895 chrX ENm006 152727395 chrX ENm006 152820295 chrX ENm006 152821995 chrX ENm006 152827895 chrX ENm006 152837595 chrX ENm006 152878095 chrX ENm006 152960295 chrX ENm006 152983495 chrX ENm006 152997795 chrX ENm006 153020895 chrX ENm006 153035595 chrX ENm006 153839395 chrX ENr213 23735682 chr18 ENr213 23819382 chr18 ENr213 23879982 chr18 ENr213 23882882 chr18 ENr213 23898482 chr18 ENr213 23920882 chr18 ENr213 23944582 chr18 ENr213 23989082 chr18 ENr213 23994282 chr18 ENm008 321251 chr16 ENm008 447651 chr16 ENm008 473551 chr16 ENm008 481451 chr16 ENr112 51736606 chr2 ENr222 132263090 chr6 ENr222 132271090 chr6 ENr222 132300390 chr6 ENr222 132318190 chr6 ENr222 132495290 chr6 ENr222 132599490 chr6 ENr321 119002671 chr8 ENr321 119015971 chr8 ENr321 119023171 chr8 ENr321 119028971 chr8 ENr321 119070471 chr8 ENr321 119076671 chr8 ENr321 119092671 chr8 ENr321 119099771 chr8 ENr321 119106071 chr8 ENr321 119118771 chr8 ENr321 119134271 chr8 ENr321 119151671 chr8 ENr321 119154071 chr8 ENr321 119156171 chr8 ENr321 119157771 chr8 ENr321 119160271 chr8 ENr321 119162171 chr8 ENr321 119204571 chr8 ENr321 119291571 chr8 ENr321 119338571 chr8 ENm005 32721987 chr21 ENm005 32772287 chr21 ENm005 32775787 chr21 ENm005 32788087 chr21 ENm005 32806087 chr21 ENm005 32817887 chr21 ENm005 32899187 chr21 ENm005 33100787 chr21 ENm005 33247187 chr21 ENm005 33253887 chr21 ENm005 33259187 chr21 ENm005 33329687 chr21 ENm005 33370087 chr21 ENm005 33405587 chr21 ENm005 33407387 chr21 ENm005 33410487 chr21 ENm005 33421487 chr21 ENm005 33439187 chr21 ENm005 33456887 chr21 ENm005 33707287 chr21 ENm005 33950887 chr21 ENm005 33969187 chr21 ENm005 33978087 chr21 ENm005 33981287 chr21 ENm005 33990987 chr21 ENm005 34088287 chr21 ENm005 34153287 chr21 ENm005 34235887 chr21 ENm005 34241787 chr21 ENm005 34269687 chr21 ENm005 34316687 chr21 ENr311 53103726 chr14 ENr311 53108426 chr14 ENr311 53135826 chr14 ENr311 53278626 chr14 ENr311 53280626 chr14 ENr111 29430566 chr13 ENr111 29436966 chr13 ENr111 29492066 chr13 ENr111 29510466 chr13 ENr111 29524966 chr13 ENr111 29849366 chr13 ENr111 29867866 chr13 ENr231 148080384 chr1 ENr231 148157384 chr1 ENr231 148302484 chr1 ENm011 1750942 chr11 ENm011 1886442 chr11 ENm011 1982642 chr11 ENr123 38701527 chr12 ENr123 38712827 chr12 ENr123 38835427 chr12 ENr333 33363879 chr20 ENr333 33488679 chr20 ENr333 33612179 chr20 ENr333 33691379 chr20 ENr333 33693279 chr20 ENr333 33696479 chr20 ENr232 128913406 chr9 ENr232 128968806 chr9 ENr232 128982306 chr9 ENr232 128983906 chr9 ENr232 128986606 chr9 ENr232 129009106 chr9 ENr232 129119806 chr9 ENr232 129177406 chr9 ENr232 129246606 chr9 ENm003 116063866 chr11 ENm003 116079466 chr11 ENm003 116085266 chr11 ENm003 116091566 chr11 ENm003 116107566 chr11 ENm003 116307166 chr11 ENm003 116332866 chr11 ENm003 116366466 chr11 ENm003 116370366 chr11 ENm003 116449066 chr11 ENm003 116453766 chr11 ENr332 64083239 chr11 ENr332 64169039 chr11 ENr332 64235439 chr11 ENr332 64239239 chr11 ENr332 64250039 chr11 ENr332 64264439 chr11 ENr332 64285239 chr11 ENr332 64287939 chr11 ENr332 64412039 chr11 ENr221 55939657 chr5 ENr221 55947157 chr5 ENr221 55969057 chr5 ENr221 56001557 chr5 ENr221 56030657 chr5 ENr221 56046557 chr5 ENr221 56048657 chr5 ENr221 56158357 chr5 ENm014 125759157 chr7 ENm014 126116557 chr7 ENm014 126330357 chr7 ENm014 126348857 chr7 ENm014 126423557 chr7 ENm014 126769957 chr7 ENm001 115465422 chr7 ENm001 115486622 chr7 ENm001 115827322 chr7 ENm001 115849622 chr7 ENm001 115969722 chr7 ENm001 115971722 chr7 ENm001 116017122 chr7 ENm001 116036722 chr7 ENm001 116090422 chr7 ENm001 116138922 chr7 ENm001 116254822 chr7 ENm001 116352122 chr7 ENm001 116360022 chr7 ENm001 116374022 chr7 ENm001 116376022 chr7 ENm001 116383422 chr7 ENm001 116720322 chr7 ENm001 116886522 chr7 ENm001 116907622 chr7 ENm001 116910422 chr7 ENm001 117043022 chr7 ENm001 117047822 chr7 ENm001 117052922 chr7 ENm001 117069722 chr7 ENm001 117100822 chr7 ENm001 117122622 chr7 ENm001 117197322 chr7 ENm007 59037535 chr19 ENm007 59236635 chr19 ENm007 59470835 chr19 ENm007 59492935 chr19 ENm007 59528635 chr19 ENm007 59594535 chr19 ENm007 59639335 chr19 ENm007 59676535 chr19 ENr324 122685000 chrX ENr324 122783000 chrX ENr324 122838100 chrX ENr313 60864100 chr16 ENr313 61020700 chr16 ENr313 61257100 chr16