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Domain name : PF08510.4_PIG-P
Domain size : 153
Domain Description : PIG-P
Domain gathering score : -11.4000
Domain trusted cutoff : -8.7000
Domain architecture : TM/SP [1 91], non-TM/SP [92 208]
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Example 1
gi|125533015|gb|EAY79580.1| hypothetical protein OsI_033539 [Oryza sativa (indica cultivar-group)] 899 (length) 764 894 .. (wrt seq) 1 153 [] (wrt HMM) 
No.of residues in non-TM/SP region : 39 [33%(over non-TM/SP length)]

Scores for sequence family classification:
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
eIF2A           Eukaryotic translation initiation fac   356.8   4.1e-104   1
PIG-P           PIG-P                                    92.8    1.2e-24   1
RRM_1           RNA recognition motif. (a.k.a. RRM, R    28.9    2.1e-05   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
eIF2A             1/1     407   607 ..     1   204 []   356.8 4.1e-104
PIG-P             1/1     764   894 ..     1   153 []    92.8  1.2e-24
RRM_1             1/1      63   141 ..     1    73 []    28.9  2.1e-05

Alignments of top-scoring domains:
eIF2A: domain 1 of 1, from 407 to 607: score 356.8, E = 4.1e-104
                   *->KsFFkaDkvqlkWNknGtyLLvlvsTdvDKtnkSYYGetnLYliglt
                      K++F++++++++W+++G+yL+v+v+ +++Kt+kS+Y++++L++i+++
  gi|1255330   407    KNLFSVSDCKMYWQNSGEYLAVQVD-RYTKTKKSTYTGFELFRIKER 452  

                   ggpdevveLdkeGPKIhDvaWSpnskeFaVvyGymPapkitlFdlk...r
                   ++p+ev+eLd++++KI+++aW+p++++FaV++G+ P p+i+++++k++++
  gi|1255330   453 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDGPKPDISFYSMKtsnN 502  

                   .gkgnvihslgeqprNTifwsPfGrlvllAGFGNLaGqiefYwDvqnnkk
                    ++++++++l+ +++N++fwsP Gr++++AG+++++Gq+ef ++v+ +++
  gi|1255330   503 iSRVSKLTTLKGKQANALFWSPGGRFIVFAGLKGFNGQLEF-YNVD-ELE 550  

                   kiatfeasnatvceWsPdGryflTATTsPRlRVDNGfKIWhysGkLlykk
                   ++at e+++at+++W+P+Gry++ A+Ts +++++NGf+IW++sGk lyk+
  gi|1255330   551 TMATGEHFMATDIMWDPTGRYLASAVTS-VHEMENGFQIWSFSGKQLYKV 599  

                   dfpsgdELyqv<-*
                   ++   d+++q+   
  gi|1255330   600 SK---DHFFQF    607  

PIG-P: domain 1 of 1, from 764 to 894: score 92.8, E = 1.2e-24
                   *->pereiyGFvlyilsqlafilYllWAfiPdsvLhslgItYYPsKYWAl
                        +e yGFv++i+++ a   Yl WA++P+++L+ lg+tYYP ++WAl
  gi|1255330   764    GSSEAYGFVGSIAAVAAAAAYLAWAYLPEPWLRFLGVTYYPARHWAL 810  

                   AiPiylLvalifgyvvyflyNteVlTePL..........dSintIt.Dey
                   A+P++lL a   g+v+y   N++   +P+  ++  +++ ++i++  +De+
  gi|1255330   811 AMPSLLLEAAAQGMVLYMASNFLLAPAPTllghylrgtcSDIFCLLpDEF 860  

                   srvdgeseasegedleqikiakstdgiyedqlmgpderktneiledeesi
                   +r+    + + ge                                 e++i
  gi|1255330   861 AREPAACGTATGE---------------------------------EKPI 877  

                   ppvsDlpiseVnklLYl<-*
                   + +sD++i+ +n+l+++   
  gi|1255330   878 EDISDISIDKINNLMFG    894  

RRM_1: domain 1 of 1, from 63 to 141: score 28.9, E = 2.1e-05
                CS    EEEESET      TTTHHHHHHHHHTTTSEEEE  EEEEEE.STTTT
                   *->lfVgNLp......pdtteedLkdlFskfGpies..ikivrDttretg
                      + V NLp  ++++++  e  ++++ s++G i++++  ++ +  +et+
  gi|1255330    63    VVVDNLPvvppekFEKLENVIRKIYSQIGAIKEggLWMPVN--PETK 107  

                CS SEEEEEEEEESSHHHHHHHHHHHSSEEETTEEEE   
                   rskGfaFVeFedeedAekAldalnGkelggrelr<-*
                   ++ G++F+e+ ++ +Ae A ++ nG++l+   +    
  gi|1255330   108 KTYGYCFIEYNTPQEAELAREKTNGYKLDKSHIF    141  


Example 2
gi|125575753|gb|EAZ17037.1| hypothetical protein OsJ_031246 [Oryza sativa (japonica cultivar-group)] 877 (length) 742 872 .. (wrt seq) 1 153 [] (wrt HMM) 
No.of residues in non-TM/SP region : 39 [33%(over non-TM/SP length)]

Scores for sequence family classification:
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
eIF2A           Eukaryotic translation initiation fac   270.4    4.2e-78   1
PIG-P           PIG-P                                    92.8    1.2e-24   1
RRM_1           RNA recognition motif. (a.k.a. RRM, R    28.9    2.1e-05   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
eIF2A             1/1     407   585 ..     1   204 []   270.4  4.2e-78
PIG-P             1/1     742   872 ..     1   153 []    92.8  1.2e-24
RRM_1             1/1      63   141 ..     1    73 []    28.9  2.1e-05

Alignments of top-scoring domains:
eIF2A: domain 1 of 1, from 407 to 585: score 270.4, E = 4.2e-78
                   *->KsFFkaDkvqlkWNknGtyLLvlvsTdvDKtnkSYYGetnLYliglt
                      K++F++++++++W+++G+yL+v+v+ +++Kt+kS+Y++++L++i+++
  gi|1255757   407    KNLFSVSDCKMYWQNSGEYLAVQVD-RYTKTKKSTYTGFELFRIKER 452  

                   ggpdevveLdkeGPKIhDvaWSpnskeFaVvyGymPapkitlFdlk...r
                   ++p+ev+eLd++++KI+++aW+p++++FaV++G+ P p+i+++++k++++
  gi|1255757   453 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDGPKPDISFYSMKtsnN 502  

                   .gkgnvihslgeqprNTifwsPfGrlvllAGFGNLaGqiefYwDvqnnkk
                    ++++++++l+ +++N++fwsP Gr++++AG+++++Gq+ef ++v+ +++
  gi|1255757   503 iSRVSKLTTLKGKQANALFWSPGGRFIVFAGLKGFNGQLEF-YNVD-ELE 550  

                   kiatfeasnatvceWsPdGryflTATTsPRlRVDNGfKIWhysGkLlykk
                   ++at e+++at+++W+P+G                       sGk lyk+
  gi|1255757   551 TMATGEHFMATDIMWDPTG-----------------------SGKQLYKV 577  

                   dfpsgdELyqv<-*
                   ++   d+++q+   
  gi|1255757   578 SK---DHFFQF    585  

PIG-P: domain 1 of 1, from 742 to 872: score 92.8, E = 1.2e-24
                   *->pereiyGFvlyilsqlafilYllWAfiPdsvLhslgItYYPsKYWAl
                        +e yGFv++i+++ a   Yl WA++P+++L+ lg+tYYP ++WAl
  gi|1255757   742    GSSEAYGFVGSIAAVAAAAAYLAWAYLPEPWLRFLGVTYYPARHWAL 788  

                   AiPiylLvalifgyvvyflyNteVlTePL..........dSintIt.Dey
                   A+P++lL a   g+v+y   N++   +P+  ++  +++ ++i++  +De+
  gi|1255757   789 AMPSLLLEAAAQGMVLYMASNFLLAPAPTllghylrgtcSDIFCLLpDEF 838  

                   srvdgeseasegedleqikiakstdgiyedqlmgpderktneiledeesi
                   +r+    + + ge                                 e++i
  gi|1255757   839 AREPAACGTATGE---------------------------------EKPI 855  

                   ppvsDlpiseVnklLYl<-*
                   + +sD++i+ +n+l+++   
  gi|1255757   856 EDISDISIDKINNLMFG    872  

RRM_1: domain 1 of 1, from 63 to 141: score 28.9, E = 2.1e-05
                CS    EEEESET      TTTHHHHHHHHHTTTSEEEE  EEEEEE.STTTT
                   *->lfVgNLp......pdtteedLkdlFskfGpies..ikivrDttretg
                      + V NLp  ++++++  e  ++++ s++G i++++  ++ +  +et+
  gi|1255757    63    VVVDNLPvvppekFEKLENVIRKIYSQIGAIKEggLWMPVN--PETK 107  

                CS SEEEEEEEEESSHHHHHHHHHHHSSEEETTEEEE   
                   rskGfaFVeFedeedAekAldalnGkelggrelr<-*
                   ++ G++F+e+ ++ +Ae A ++ nG++l+   +    
  gi|1255757   108 KTYGYCFIEYNTPQEAELAREKTNGYKLDKSHIF    141  


Revised version of Example 1 and 2
gi|218185049|gb|EEC67476.1| hypothetical protein OsI_34715 [Oryza sativa Indica Group] 163 (length)
Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PIG-P      PIG-P                                         92.8    1.2e-24   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PIG-P        1/1      28   158 ..     1   153 []    92.8  1.2e-24

Alignments of top-scoring domains:
PIG-P: domain 1 of 1, from 28 to 158: score 92.8, E = 1.2e-24
                   *->pereiyGFvlyilsqlafilYllWAfiPdsvLhslgItYYPsKYWAl
                        +e yGFv++i+++ a   Yl WA++P+++L+ lg+tYYP ++WAl
  gi|2181850    28    GSSEAYGFVGSIAAVAAAAAYLAWAYLPEPWLRFLGVTYYPARHWAL 74   

                   AiPiylLvalifgyvvyflyNteVlTePL..........dSintIt.Dey
                   A+P++lL a   g+v+y   N++   +P+  ++  +++ ++i++  +De+
  gi|2181850    75 AMPSLLLEAAAQGMVLYMASNFLLAPAPTllghylrgtcSDIFCLLpDEF 124  

                   srvdgeseasegedleqikiakstdgiyedqlmgpderktneiledeesi
                   +r+    + + ge                                 e++i
  gi|2181850   125 AREPAACGTATGE---------------------------------EKPI 141  

                   ppvsDlpiseVnklLYl<-*
                   + +sD++i+ +n+l+++   
  gi|2181850   142 EDISDISIDKINNLMFG    158  

  
Example 3
gi|170030092|ref|XP_001842924.1| conserved hypothetical protein [Culex quinquefasciatus]gi|167865930|gb|EDS29313.1| conserved hypothetical protein [Culex quinquefasciatus] 165 (length) 85 164 .. (wrt seq) 1 153 [] (wrt HMM) 
No.of residues in non-TM/SP region : 0 [0%(over non-TM/SP length)]

Scores for sequence family classification:
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
Pcc1          Transcription factor Pcc1                  66.8    7.9e-17   1
PIG-P         PIG-P                                      47.9    2.7e-11   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Pcc1            1/1       8    84 ..     1    82 []    66.8  7.9e-17
PIG-P           1/1      85   164 ..     1   153 []    47.9  2.7e-11

Alignments of top-scoring domains:
Pcc1: domain 1 of 1, from 8 to 84: score 66.8, E = 7.9e-17
                CS    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XX
                   *->tltLkvPFpsereAeiAlrsLavDkeLkpslVrreltvsgtgsaknv
                        +Lk+PFp++reAeiA+ +L+vD+e+k+s+  + l+ ++     n 
  gi|1700300     8    VASLKIPFPTRREAEIAYDVLRVDAEPKRSFIEKTLKLED-----NQ 49   

                CS XXXXXXXXXXXXXXXXXXXXXXXX---S-----XX   
                   LvVrykAtdaRlLRvsvNSflDsLsLVvetmqefd<-*
                   L V++++++a   Rv+v Sf++sL L  e ++++    
  gi|1700300    50 LLVEFRGEQAKNVRVGVGSFFESLILMPEHTPAPT    84   

PIG-P: domain 1 of 1, from 85 to 164: score 47.9, E = 2.7e-11
                   *->pereiyGFvlyilsqlafilYllWAfiPdsvLhslgItYYPsKYWAl
                      p r+iyGF l++l+ ++filY+lWAfiP+++L+ +g+tY+P+KY+Al
  gi|1700300    85    PSRAIYGFCLFLLFKTLFILYVLWAFIPTELLDGFGLTYLPDKYFAL 131  

                   AiPiylLval.ifgyvvyflyNteVlTePLdSintItDeysrvdgeseas
                   ++Pi+lLv l++f+++vy ++++  +++         D+++         
  gi|1700300   132 FMPILLLVGLtFFAFLVYPSLSLA-MMP---------DRDAWP------- 164  

                   egedleqikiakstdgiyedqlmgpderktneiledeesippvsDlpise
                                                                     
  gi|1700300     - -------------------------------------------------- -    

                   VnklLYl<-*
                             
  gi|1700300     - -------    -    


Example 4
gi|71022227|ref|XP_761344.1| hypothetical protein UM05197.1 [Ustilago maydis 521]gi|46097652|gb|EAK82885.1| hypothetical protein UM05197.1 [Ustilago maydis 521] 379 (length) 297 379 .] (wrt seq) 1 153 [] (wrt HMM) 
No.of residues in non-TM/SP region : 1 [1%(over non-TM/SP length)]

Scores for sequence family classification:
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
CIA30         Complex I intermediate-associated prote   175.0    2.2e-49   1
PIG-P         PIG-P                                      24.3    5.1e-09   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
CIA30           1/1       8   234 ..     1   210 []   175.0  2.2e-49
PIG-P           1/1     297   379 .]     1   153 []    24.3  5.1e-09

Alignments of top-scoring domains:
CIA30: domain 1 of 1, from 8 to 234: score 175.0, E = 2.2e-49
                   *->fdF.......tqrqpeslddWravdDtvmGEGsStsnvailqispng
                      ++F ++++++++  p+  dd++avdD+v+G G+S+s++ai+q+ p +
  gi|7102222     8    PLFapgpnprAPALPWRSDDFFAVDDRVRG-GTSHSHTAIVQFPPIS 53   

                   .gtalFsGnLstenpgdgrerrrrGGFASvrtkDqprsfnfdpplDLseY
                   +g ++FsG+L+t ++g+       +GFAS+ ++        + p+ L++ 
  gi|7102222    54 rGELVFSGFLDTLTLGG-------AGFASQSST-------TCFPVTLNKQ 89   

                   .fngieLrVrknGDpGr.....................rYkfnlrtedpf
                   +f g++L V +  +    ++++++ ++ ++++++ + +++ f ++te p 
  gi|7102222    90 dFVGLRLVV-R-KN-PNwqeptppygganpgggkapvtSFVFEIKTEEP- 135  

                   lglteradgreqdglsYeadFdTkk..............ggewqtvkiPF
                      ++r+dgr+q+ +++e++F +++ ++++ ++ +  ++++ +++++  +
  gi|7102222   136 ---ERRPDGRRQSVIVWEWSFSIPQldgqeahslnlmqtNDDFWVFDSTW 182  

                   sdFkptfRGrpvddap..pldpsrissiglllSKFeydGklnpdkqeGpF
                   sdFkp++RGrpvd++  +++ p++ ++++l+        ++n+  q+GpF
  gi|7102222   183 SDFKPMYRGRPVDPDKagEFRPQDTREWSLMA-------RSNFQAQSGPF 225  

                   eLeidsIka<-*
                    L+++s++a   
  gi|7102222   226 VLQLHSLSA    234  

PIG-P: domain 1 of 1, from 297 to 379: score 24.3, E = 5.1e-09
                   *->pereiyGFvlyilsqlafilYllWAfiPdsvLhslgItYYPsKYWAl
                        +e+yGF+l+i s+l++++++ WA+ Pd vLhs+gI  YP++ WA 
  gi|7102222   297    CAAEYYGFALFIFSTLLWVIWIAWALTPDTVLHSIGIGWYPNREWAF 343  

                   AiPiylLvalifgyvvyflyNteVlTePLdSintItDeysrvdgesease
                    +P+++L+a++ +y v++++N   +T+ L +i ++t              
  gi|7102222   344 LLPAWSLFAVLAVYAVFIGLNAK-STPELREIVNVT-------------- 378  

                   gedleqikiakstdgiyedqlmgpderktneiledeesippvsDlpiseV
                                                                     
  gi|7102222     - -------------------------------------------------- -    

                   nklLYl<-*
                        +   
  gi|7102222   379 -----G    379  
