--------------------------------------------------------------------------------
Domain name : PF07172.3_GRP
Domain size : 134
Domain Description : Glycine rich protein family
Domain gathering score : 17.2000
Domain trusted cutoff : 18.6000
Domain architecture : TM/SP [1 29], non-TM/SP [30 145]
--------------------------------------------------------------------------------
Example 1
gi|116057264|emb|CAL51691.1| putative RNA helicase (ISS) [Ostreococcus tauri] 693 (length) 582 692 .. (wrt seq) 1 134 [] (wrt HMM) 
No.of residues in non-TM/SP region : 85 [73%(over non-TM/SP length)]

Scores for sequence family classification:
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
DEAD            DEAD/DEAH box helicase                  214.1    3.8e-61   1
Helicase_C      Helicase conserved C-terminal domain    110.9    4.1e-30   1
GUCT            GUCT (NUC152) domain                     39.9      1e-08   1
GRP             Glycine rich protein family               1.8      5e-05   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
DEAD              1/1     105   281 ..     1   211 []   214.1  3.8e-61
Helicase_C        1/1     356   430 ..     1    76 []   110.9  4.1e-30
GUCT              1/1     526   626 ..     1   104 []    39.9    1e-08
GRP               1/1     582   692 ..     1   134 []     1.8    5e-05

Alignments of top-scoring domains:
DEAD: domain 1 of 1, from 105 to 281: score 214.1, E = 3.8e-61
                CS    THHHHHHHHHHHCTSEEEEESTSSSCCHHHHHHHHHHHS.T S....
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx
                   *->tpiQaeaipaileGrDvlvqApTGSGKTlAfllPileallk.pennq
                        iQae+++++l GrDv+++A+TG GKTlAf+lPi+e ++k      
  gi|1160572   105    FQIQAETLEIALGGRDVVGRARTGCGKTLAFVLPIIELMAKmS--PM 149  

                CS ........SSSEEEEEESSCHHHHHHHHHHHHHHCCC.......CSS-EE
                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   eskplkkkkdgpqalvlaPTReLaeQiyeelkklgkgiqpdleellglkv
                    ++  + +++ p+++vlaPTReLa+Q++ ++  +g+         +g k 
  gi|1160572   150 PANGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNS--------YGFKS 191  

                CS EEETTTSHHHHHHHHH..T..HCHT--SSEEEEHHHHHHHHH....HT.C
                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   allyGGdsikeqleklrYrlkkglkgkpdIlvgTPgrLldlllkgrkreg
                    ++yGG +++eq+  l  r   g    +dI++gTPgr  d+l    +r +
  gi|1160572   192 LCVYGGAPYREQEMGL--R--SG----VDIVIGTPGRMKDHL----ER-K 228  

                CS TSS.CCCTTEEEEESHHHHTTT.TTHHHHHHHHHCSG.CC.HT...TS-E
                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   asldlknlkllVlDEAdrlldmkGfgddleeilrrlprpkkrfqdlpnrq
                   + l + +lk+ VlDEAd++l+m Gf dd+e il+     +        +q
  gi|1160572   229 T-LMMTDLKFRVLDEADEMLNM-GFVDDVETILKS-S-GD--------VQ 266  

                CS EEEEESS-HHHHHHH   
                RF xxxxxxxxxxxxxxx   
                   tllfSATlprnvedl<-*
                   tllfSATlp++v+d+   
  gi|1160572   267 TLLFSATLPSWVKDI    281  

Helicase_C: domain 1 of 1, from 356 to 430: score 110.9, E = 4.1e-30
                CS    HHH TT-EEEEETTSSHHHHHHHHHHHHHTTSSSEEEESTTCCTTS-
                   *->llk.pgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                      +  ++g    +lhG+ sq++Re +l  Fr++k++vLvaTdva+rG+D
  gi|1160572   356    KEIpKGA--KALHGDVSQSQREVVLSLFREDKFQVLVATDVAARGLD 400  

                CS TTTEEEEEESSTSSSHHHHHHHHTTSTTST   
                   ipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   i++v lVI++++p++ e+yi+R GR+GRaG   
  gi|1160572   401 ITGVELVIQCEPPKDAETYIHRSGRTGRAG    430  

GUCT: domain 1 of 1, from 526 to 626: score 39.9, E = 1e-08
                   *->GytsPikqRSLLtsmeGyVTLlLiRDPesgrpiyspSfaygvLkrfL
                      G  +   qRSLLts  G +TLl      +g+ i +p +++ +L+  +
  gi|1160572   526    GHGE-LRQRSLLTSHSGQTTLLF---TANGVDIRTPTYVWNFLRQRM 568  

                   peekvskVkgmcLtADkkvqGAVFDVPsedleellegwedaag....vsL
                    e  +    +++L  D+  + AVFDVPse ++ + +  e a ++++ v++
  gi|1160572   569 DESEL-QLRRLTLSMDN--KAAVFDVPSELADKFVALSEPATSgktaVTI 615  

                   evvtkLPpLQE<-*
                    + ++LP+L +   
  gi|1160572   616 IECAELPELSQ    626  

GRP: domain 1 of 1, from 582 to 692: score 1.8, E = 5e-05
                   *->MASKallL.....LGLlLAavLLisSEVaaadltEeaeksnteKses
                      M+ Ka++++ +++L+  ++a     SE a+   t  + ++  e +e 
  gi|1160572   582    MDNKAAVFdvpseLADKFVA----LSEPATSGKTAVTIIECAELPEL 624  

                   eeeVqddkyGGgGyhgGGynGGGGgGfgggGgGGYgGgGGggygGGGyyg
                   +  +q  ++     + GG++GGG        gG + G GG  ++GGG++ 
  gi|1160572   625 SQRPQAREG-----GFGGGRGGG--------GGRFSGRGG--NYGGGRGS 659  

                   GGGGYgGGGghvayGGgGGgygGGGGypGGyGngGGGYgGGG<-*
                    GG +gG+G         Gg  GG G++G++   GGG+g+G    
  gi|1160572   660 PGGRFGGRGSP-------GGRAGGRGGGGRF--SGGGRGRGR    692  
