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Domain name : PF02416.8_MttA_Hcf106
Domain size : 74
Domain Description : mttA/Hcf106 family
Domain gathering score : 7.0000
Domain trusted cutoff : 7.0000
Domain architecture : TM/SP [1 22], non-TM/SP [23 83]
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Example 4
gi|58699689|ref|ZP_00374359.1| RNA polymerase sigma factor RpoD [Wolbachia endosymbiont of Drosophila ananassae]gi|58533795|gb|EAL58124.1| RNA polymerase sigma factor RpoD [Wolbachia endosymbiont of Drosophila ananassae] 256 (length) 204 255 .. (wrt seq) 1 74 [] (wrt HMM) 
No.of residues in non-TM/SP region : 29 [48%(over non-TM/SP length)]

Scores for sequence family classification:
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
MttA_Hcf106     mttA/Hcf106 family                       47.6      5e-11   1
Sigma70_r2      Sigma-70 region 2                        29.3    1.6e-05   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
MttA_Hcf106       1/1     204   255 ..     1    74 []    47.6    5e-11
Sigma70_r2        1/1     141   204 ..     1    71 []    29.3  1.6e-05

Alignments of top-scoring domains:
MttA_Hcf106: domain 1 of 1, from 204 to 255: score 47.6, E = 5e-11
                   *->iGipelliIlvValllFGPKKLPElGRaLGktLReFKkAtkeleeea
                      +G++ l ++l+++l+lFG+++LP + + LGk++++ K+++k+ e   
  gi|5869968   204    LGPWQLFLVLIIILVLFGAGRLPQVMGDLGKGIKNLKQELKDSEK-- 248  

                   keerkTLdaeitidkVseSsdekeake<-*
                                       ++ ++++   
  gi|5869968   249 --------------------LSSNEPD    255  

Sigma70_r2: domain 1 of 1, from 141 to 204: score 29.3, E = 1.6e-05
                CS    HHHHHHHHHHHHHHHHCSTCCHHHHHHHHHHHHHHHHHHCCTS-SCC
                   *->LverylplvrrlArrllgdgadaeDLvQEgflrllraverfdpgrgv
                      +++++l+lv+++A+++ ++g+d  DL+QEg+++l++av++fd+ rg+
  gi|5869968   141    MIKANLRLVVSIAKKYSKRGLDLLDLIQEGNIGLMKAVDKFDYKRGY 187  

                CS HHHHHHHHHHHHHHHHCHHTSTTT   
                   sfstwLytiarnaiiDalRrrrrr<-*
                   +fst  +   + +       +      
  gi|5869968   188 KFSTEFFNPPKEV-------KMSL    204  


Example 2
gi|186455846|ref|ZP_02966160.1| phosphatidylglycerophosphatase A [bacterium Ellin514]gi|184207924|gb|EDU04969.1| phosphatidylglycerophosphatase A [bacterium Ellin514] 244 (length) 1 60 [. (wrt seq) 1 74 [] (wrt HMM) 
No.of residues in non-TM/SP region : 37 [61%(over non-TM/SP length)]

Scores for sequence family classification:
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
PgpA            Phosphatidylglycerophosphatase A        136.3    9.7e-38   1
MttA_Hcf106     mttA/Hcf106 family                       15.6    0.00014   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PgpA              1/1      74   234 ..     1   164 []   136.3  9.7e-38
MttA_Hcf106       1/1       1    60 [.     1    74 []    15.6  0.00014

Alignments of top-scoring domains:
PgpA: domain 1 of 1, from 74 to 234: score 136.3, E = 9.7e-38
                CS    HHHHHHHHHTT......--HHHHHHHHHHHHT--HHHHHHHHHHSHH
                   *->ahllatgFGsGLsPkAPGTfGsLaAlplylllltlglprnvrvLkre
                      + ++a gFGsG++P+APGTfGsL++l+ + +ll  g+          
  gi|1864558    74    VLWVAQGFGSGRIPWAPGTFGSLVGLVWFAALLAGGSY--------- 111  

                CS HHHHHHHHHHHHHHHHTT-S-TTHHHHHHTT-TT--HHHHHHHHHHHTT-
                   VqnlllllilllfllGiwacgktekdlgvhDpgeIViDEvvGqwialllv
                     +l+l+++++ +++ + +cg +ek l + Dp+++V DE++++ i++l  
  gi|1864558   112 --WLYLIGCAVGIVASVQLCGAAEKILDETDPPSVVLDEIIAIPICFLGW 159  

                CS              ..... ............CGHHHHHHHHHHH--THHH
                   .............Pfgss.tagskalswlwlllaFvLFRfFDIvKPwPIr
                    +    +++  ++P+++++  +     wl  ++  vLFR+FDI KPwP++
  gi|1864558   160 vsfiyfktgflpePQYFFsRQT-----WLITVAVYVLFRLFDIAKPWPVK 204  

                CS HHHTSSSSS--CCHHHHHHHHHHHHHHHHHH   
                   wlDrrvkGGlGIMlDDvlAGiyAalvlalil<-*
                      + ++GG+G+ +DDvlA++y +lv+++++   
  gi|1864558   205 QS-QSLPGGWGVTIDDVLAAVYVNLVVLAAH    234  

MttA_Hcf106: domain 1 of 1, from 1 to 60: score 15.6, E = 0.00014
                   *->iGipelliIlvValllFGPKKLPElGRaLGktLReFKkAtkeleeea
                      +G+ e+++Il+  l+lFG ++    G++ ++++ eF +At e + e 
  gi|1864558     1    MGAYEIILILALLLILFGVSRWSRFGKGFKRGMEEFINATGEVTKE- 46   

                   keerkTLdaeitidkVseSs...dekeake<-*
                                    + + ++++ ++k+   
  gi|1864558    47 ----------------MQDAmgsEDPSKKD    60   
