############################################################################## ### ### ### Electronic paper (Acta Crystallographica Section E) ### ### ### ############################################################################## # # # This CIF contains the data in a paper accepted for publication in Acta # # Crystallographica Section E. It conforms to the requirements of Notes # # for Authors for Section E, and has been peer reviewed under the auspices # # of the IUCr Commission on Journals. # # # # Full details of the Crystallographic Information File format # # are given in the paper "The Crystallographic Information File (CIF): # # a New Standard Archive File for Crystallography" by S. R. Hall, F. H. # # Allen and I. D. Brown [Acta Cryst. (1991), A47, 655-685]. # # # # The current version of the core CIF dictionary is obtainable from # # ftp://ftp.iucr.org/pub/cif_core.dic. The current version number is 2.4. # # # # Software is freely available for graphical display of the structure(s) in # # this CIF. For information consult the CIF home page http://www.iucr.org/ # # cif/home.html # # # # This file may be used for bona fide research purposes within the # # scientific community so long as proper attribution is given to the journal # # article from which it was obtained. # # # ############################################################################## data_global _audit_creation_method 'form.cif (version 2.0)' _journal_data_validation_number ? _journal_date_recd_electronic 2008-07-09 _journal_date_accepted 2008-07-11 _journal_name_full 'Acta Crystallographica, Section E' _journal_year 2008 _journal_volume 64 _journal_issue 8 _journal_page_first o1523 _journal_page_last o1524 _journal_paper_category QO _journal_coeditor_code AT2591 _publ_contact_author_name 'Prof. Fun Hoong Kun' _publ_contact_author_address ; X-ray Crystallography Unit School of Physics Universiti Sains Malaysia 11800 USM, Penang MALAYSIA ; _publ_contact_author_email hkfun@usm.my _publ_contact_author_fax '6 04 6579150' _publ_contact_author_phone '6 04 6533652' _publ_section_title ; 5-Hydroxy-8-nitro-1,4-naphthoquinone ; loop_ _publ_author_name _publ_author_footnote _publ_author_address 'Daniel Teoh-Chuan Tan' ? ; School of Chemical Sciences Universiti Sains Malaysia 11800 USM, Penang Malaysia ; 'Hasnah Osman' ; Additional correspondence author, e-mail: ohasnah@usm.my. ; ; School of Chemical Sciences Universiti Sains Malaysia 11800 USM, Penang Malaysia ; 'Azlina Harun Kamaruddin' ? ; School of Chemical Engineering, Universiti Sains Malaysia, Seri Ampangan, 14300 Nibong Tebal, Penang, Malaysia ; 'Reza Kia' ? ; X-ray Crystallography Unit School of Physics Universiti Sains Malaysia 11800 USM, Penang Malaysia ; 'Hoong-Kun Fun' ? ; X-ray Crystallography Unit School of Physics Universiti Sains Malaysia 11800 USM, Penang Malaysia ; data_I _audit_creation_method SHELXL-97 _chemical_name_systematic ; 5-Hydroxy-8-nitro-1,4-naphthoquinone ; _chemical_name_common ; ; _chemical_formula_moiety 'C10 H5 N O5' _chemical_formula_sum 'C10 H5 N O5' _chemical_formula_iupac 'C10 H5 N O5' _chemical_formula_weight 219.15 _chemical_melting_point ? _symmetry_cell_setting 'monoclinic' _symmetry_space_group_name_H-M 'P 21/n' _symmetry_space_group_name_Hall '-P 2yn' loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' _cell_length_a 8.6809(2) _cell_length_b 8.4250(2) _cell_length_c 12.1845(3) _cell_angle_alpha 90.00 _cell_angle_beta 93.9460(10) _cell_angle_gamma 90.00 _cell_volume 889.02(4) _cell_formula_units_Z 4 _cell_measurement_reflns_used 5257 _cell_measurement_theta_min 2.79 _cell_measurement_theta_max 31.81 _cell_measurement_temperature 100.00(10) _exptl_crystal_description 'block' _exptl_crystal_colour 'brown' _exptl_crystal_size_max 0.35 _exptl_crystal_size_mid 0.14 _exptl_crystal_size_min 0.13 _exptl_crystal_density_diffrn 1.637 _exptl_crystal_density_meas ? _exptl_crystal_density_method 'not measured' _exptl_crystal_F_000 448 _exptl_absorpt_coefficient_mu 0.135 _exptl_absorpt_correction_type 'multi-scan' _exptl_absorpt_process_details '(SADABS; Bruker, 2005)' _exptl_absorpt_correction_T_min 0.9005 _exptl_absorpt_correction_T_max 0.9824 _exptl_special_details ; The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment. ; _diffrn_ambient_temperature 100.00(10) _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_monochromator graphite _diffrn_measurement_device_type ; Bruker SMART APEXII CCD area-detector ; _diffrn_measurement_method '\f and \w' _diffrn_detector_area_resol_mean ? _diffrn_reflns_number 22792 _diffrn_reflns_av_R_equivalents 0.0407 _diffrn_reflns_av_sigmaI/netI 0.0241 _diffrn_reflns_theta_min 2.79 _diffrn_reflns_theta_max 31.81 _diffrn_reflns_theta_full 31.81 _diffrn_measured_fraction_theta_max 0.999 _diffrn_measured_fraction_theta_full 0.999 _diffrn_reflns_limit_h_min -12 _diffrn_reflns_limit_h_max 12 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_l_min -18 _diffrn_reflns_limit_l_max 17 _diffrn_standards_number 0 _diffrn_standards_interval_count ? _diffrn_standards_interval_time ? _diffrn_standards_decay_% ? _refine_special_details ; Refinement of F^2^ against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F^2^, conventional R-factors R are based on F, with F set to zero for negative F^2^. The threshold expression of F^2^ > \s(F^2^) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F^2^ are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. ; _reflns_number_total 3028 _reflns_number_gt 2493 _reflns_threshold_expression I>2\s(I) _refine_ls_structure_factor_coef Fsqd _refine_ls_matrix_type full _refine_ls_R_factor_all 0.0488 _refine_ls_R_factor_gt 0.0405 _refine_ls_wR_factor_gt 0.1143 _refine_ls_wR_factor_ref 0.1193 _refine_ls_goodness_of_fit_ref 1.109 _refine_ls_restrained_S_all 1.109 _refine_ls_number_reflns 3028 _refine_ls_number_parameters 165 _refine_ls_number_restraints 0 _refine_ls_hydrogen_treatment mixed _refine_ls_weighting_scheme calc _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0671P)^2^+0.1177P] where P=(Fo^2^+2Fc^2^)/3' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_diff_density_max 0.498 _refine_diff_density_min -0.225 _refine_ls_extinction_method none _refine_ls_extinction_coef ? loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source 'C' 'C' 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' 'H' 'H' 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' 'N' 'N' 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' 'O' 'O' 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' _computing_data_collection 'APEX2 (Bruker, 2005)' _computing_cell_refinement 'APEX2 (Bruker, 2005)' _computing_data_reduction 'SAINT (Bruker, 2005)' _computing_structure_solution 'SHELXTL (Sheldrick, 2008)' _computing_structure_refinement 'SHELXTL (Sheldrick, 2008)' _computing_molecular_graphics 'SHELXTL (Sheldrick, 2008)' _computing_publication_material ; SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2003) ; loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group O O1 0.60929(9) 0.14448(9) 0.47684(6) 0.01684(17) Uani d . 1 . . O O2 0.70729(9) 0.29533(9) 0.65117(6) 0.01718(17) Uani d . 1 . . O O3 1.13635(9) -0.14728(9) 0.74975(6) 0.01826(17) Uani d . 1 . . O O4 0.97394(10) -0.42986(9) 0.67891(6) 0.02146(19) Uani d . 1 . . O O5 1.11804(9) -0.37894(9) 0.54429(6) 0.01912(18) Uani d . 1 . . N N1 1.01058(10) -0.34927(10) 0.60140(7) 0.01427(18) Uani d . 1 . . C C1 0.71200(11) 0.03181(12) 0.50785(8) 0.01280(18) Uani d . 1 . . C C2 0.71889(11) -0.10405(12) 0.44177(8) 0.01457(19) Uani d . 1 . . C C3 0.81830(11) -0.22605(12) 0.47321(8) 0.01431(19) Uani d . 1 . . C C4 0.91370(11) -0.21081(11) 0.56968(8) 0.01219(18) Uani d . 1 . . C C5 0.91680(11) -0.07504(11) 0.63367(7) 0.01156(18) Uani d . 1 . . C C6 1.03288(11) -0.05166(12) 0.72840(8) 0.01326(19) Uani d . 1 . . C C7 1.02414(12) 0.09636(13) 0.79222(8) 0.0172(2) Uani d . 1 . . C C8 0.91880(12) 0.20847(12) 0.76649(8) 0.0168(2) Uani d . 1 . . C C9 0.80517(11) 0.19086(12) 0.67159(8) 0.01387(19) Uani d . 1 . . C C10 0.81225(11) 0.04769(11) 0.60319(8) 0.01189(18) Uani d . 1 . . H H8 0.9139(16) 0.3051(18) 0.8063(12) 0.022(4) Uiso d . 1 . . H H2 0.6513(17) -0.1106(19) 0.3752(12) 0.025(4) Uiso d . 1 . . H H3 0.8222(16) -0.3231(18) 0.4307(12) 0.020(3) Uiso d . 1 . . H H7 1.1034(18) 0.1097(19) 0.8530(13) 0.029(4) Uiso d . 1 . . H H1O1 0.620(2) 0.223(2) 0.5255(16) 0.049(5) Uiso d . 1 . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.0161(3) 0.0151(4) 0.0187(4) 0.0031(3) -0.0031(3) 0.0017(3) O2 0.0197(4) 0.0144(4) 0.0176(3) 0.0040(3) 0.0029(3) 0.0005(3) O3 0.0190(4) 0.0170(4) 0.0179(3) 0.0025(3) -0.0051(3) 0.0005(3) O4 0.0285(4) 0.0150(4) 0.0210(4) 0.0010(3) 0.0023(3) 0.0054(3) O5 0.0161(3) 0.0181(4) 0.0234(4) 0.0026(3) 0.0032(3) -0.0025(3) N1 0.0159(4) 0.0110(4) 0.0155(4) -0.0001(3) -0.0015(3) -0.0010(3) C1 0.0114(4) 0.0132(4) 0.0136(4) 0.0000(3) -0.0003(3) 0.0021(3) C2 0.0142(4) 0.0156(5) 0.0135(4) -0.0011(3) -0.0018(3) -0.0004(3) C3 0.0152(4) 0.0138(4) 0.0138(4) -0.0011(3) 0.0000(3) -0.0021(3) C4 0.0122(4) 0.0110(4) 0.0133(4) 0.0007(3) 0.0005(3) 0.0008(3) C5 0.0120(4) 0.0112(4) 0.0114(4) -0.0010(3) 0.0002(3) -0.0001(3) C6 0.0143(4) 0.0130(4) 0.0122(4) -0.0011(3) -0.0012(3) 0.0005(3) C7 0.0203(5) 0.0157(5) 0.0150(4) -0.0008(4) -0.0030(3) -0.0026(4) C8 0.0204(5) 0.0144(5) 0.0153(4) -0.0006(4) -0.0005(3) -0.0035(3) C9 0.0155(4) 0.0123(4) 0.0141(4) -0.0002(3) 0.0031(3) 0.0002(3) C10 0.0123(4) 0.0110(4) 0.0124(4) 0.0001(3) 0.0011(3) 0.0004(3) _geom_special_details ; All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. ; loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag O1 C1 . 1.3388(11) ? O1 H1O1 . 0.89(2) ? O2 C9 . 1.2367(12) ? O3 C6 . 1.2211(12) ? O4 N1 . 1.2229(11) ? O5 N1 . 1.2274(11) ? N1 C4 . 1.4741(12) ? C1 C2 . 1.4031(14) ? C1 C10 . 1.4091(13) ? C2 C3 . 1.3793(14) ? C2 H2 . 0.969(15) ? C3 C4 . 1.3964(13) ? C3 H3 . 0.970(15) ? C4 C5 . 1.3836(13) ? C5 C10 . 1.4087(13) ? C5 C6 . 1.4921(13) ? C6 C7 . 1.4744(14) ? C7 C8 . 1.3369(15) ? C7 H7 . 0.982(16) ? C8 C9 . 1.4748(14) ? C8 H8 . 0.950(15) ? C9 C10 . 1.4699(13) ? loop_ _geom_contact_atom_site_label_1 _geom_contact_atom_site_label_2 _geom_contact_distance _geom_contact_site_symmetry_1 _geom_contact_site_symmetry_2 _geom_contact_publ_flag Cg1 Cg2 3.7188(6) . 3_756 y Cg1 Cg2 3.8299(6) . 3_756 y O2 O5 2.9940(11) . 3_756 y O5 O5 3.0367(11) . 3_746 y O5 N1 3.0608(11) . 3_746 y loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag C1 O1 H1O1 . . 107.7(12) ? O4 N1 O5 . . 124.96(9) ? O4 N1 C4 . . 117.90(8) ? O5 N1 C4 . . 117.04(8) ? O1 C1 C2 . . 118.06(8) ? O1 C1 C10 . . 121.79(9) ? C2 C1 C10 . . 120.15(9) ? C3 C2 C1 . . 119.94(9) ? C3 C2 H2 . . 121.4(9) ? C1 C2 H2 . . 118.6(9) ? C2 C3 C4 . . 119.26(9) ? C2 C3 H3 . . 121.6(9) ? C4 C3 H3 . . 119.1(9) ? C5 C4 C3 . . 122.53(9) ? C5 C4 N1 . . 121.19(8) ? C3 C4 N1 . . 116.27(8) ? C4 C5 C10 . . 118.10(8) ? C4 C5 C6 . . 122.07(8) ? C10 C5 C6 . . 119.72(8) ? O3 C6 C7 . . 120.63(9) ? O3 C6 C5 . . 121.69(9) ? C7 C6 C5 . . 117.58(8) ? C8 C7 C6 . . 122.22(9) ? C8 C7 H7 . . 121.9(10) ? C6 C7 H7 . . 115.8(9) ? C7 C8 C9 . . 121.51(9) ? C7 C8 H8 . . 122.7(9) ? C9 C8 H8 . . 115.8(9) ? O2 C9 C10 . . 121.66(9) ? O2 C9 C8 . . 119.96(9) ? C10 C9 C8 . . 118.38(9) ? C5 C10 C1 . . 119.86(9) ? C5 C10 C9 . . 120.27(8) ? C1 C10 C9 . . 119.86(9) ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion _geom_torsion_publ_flag O1 C1 C2 C3 . . . . -177.19(9) ? C10 C1 C2 C3 . . . . 3.41(15) ? C1 C2 C3 C4 . . . . -1.45(15) ? C2 C3 C4 C5 . . . . -2.37(15) ? C2 C3 C4 N1 . . . . 176.71(9) ? O4 N1 C4 C5 . . . . 72.88(12) ? O5 N1 C4 C5 . . . . -110.47(10) ? O4 N1 C4 C3 . . . . -106.21(10) ? O5 N1 C4 C3 . . . . 70.44(11) ? C3 C4 C5 C10 . . . . 4.07(14) ? N1 C4 C5 C10 . . . . -174.97(8) ? C3 C4 C5 C6 . . . . -172.05(9) ? N1 C4 C5 C6 . . . . 8.92(14) ? C4 C5 C6 O3 . . . . 4.45(15) ? C10 C5 C6 O3 . . . . -171.60(9) ? C4 C5 C6 C7 . . . . -179.01(9) ? C10 C5 C6 C7 . . . . 4.94(13) ? O3 C6 C7 C8 . . . . 175.40(10) ? C5 C6 C7 C8 . . . . -1.17(15) ? C6 C7 C8 C9 . . . . -0.45(16) ? C7 C8 C9 O2 . . . . 178.62(10) ? C7 C8 C9 C10 . . . . -1.51(15) ? C4 C5 C10 C1 . . . . -2.00(14) ? C6 C5 C10 C1 . . . . 174.21(8) ? C4 C5 C10 C9 . . . . 176.79(8) ? C6 C5 C10 C9 . . . . -7.00(14) ? O1 C1 C10 C5 . . . . 178.97(9) ? C2 C1 C10 C5 . . . . -1.65(14) ? O1 C1 C10 C9 . . . . 0.17(14) ? C2 C1 C10 C9 . . . . 179.56(9) ? O2 C9 C10 C5 . . . . -174.82(9) ? C8 C9 C10 C5 . . . . 5.31(14) ? O2 C9 C10 C1 . . . . 3.97(15) ? C8 C9 C10 C1 . . . . -175.90(9) ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag O1 H1O1 O2 . 0.889(18) 1.769(19) 2.5695(10) 148.5(16) y C2 H2 O3 4_555 0.969(15) 2.547(16) 3.1853(12) 123.4(12) y C3 H3 O5 3_746 0.970(15) 2.577(15) 3.3827(13) 140.6(11) y C7 H7 O1 4_666 0.982(16) 2.561(16) 3.1851(13) 121.4(12) y C8 H8 Cg1 2_656 0.950(15) 2.976(14) 3.6548(11) 129.5(11) y