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### ###
### Electronic paper (Acta Crystallographica Section E) ###
### ###
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# #
# This CIF contains the data in a paper accepted for publication in Acta #
# Crystallographica Section E. It conforms to the requirements of Notes #
# for Authors for Section E, and has been peer reviewed under the auspices #
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# a New Standard Archive File for Crystallography" by S. R. Hall, F. H. #
# Allen and I. D. Brown [Acta Cryst. (1991), A47, 655-685]. #
# #
# The current version of the core CIF dictionary is obtainable from #
# ftp://ftp.iucr.org/pub/cif_core.dic. The current version number is 2.4. #
# #
# Software is freely available for graphical display of the structure(s) in #
# this CIF. For information consult the CIF home page http://www.iucr.org/ #
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data_global
_audit_creation_method 'by CrystalStructure 3.7'
_journal_date_recd_electronic 2009-02-20
_journal_date_accepted 2009-02-21
_journal_name_full 'Acta Crystallographica, Section E'
_journal_year 2009
_journal_volume 65
_journal_issue 3
_journal_page_first o614
_journal_page_last o614
_journal_paper_category QO
_journal_coeditor_code TK2376
_publ_contact_author_name ' Prof. Hiroyuki Ishida'
_publ_contact_author_address
;
Department of Chemistry
Faculty of Science
Okayama University
Okayama 700-8530
Japan
;
_publ_contact_author_email ishidah@cc.okayama-u.ac.jp
_publ_contact_author_fax ' 81-86-251-7832'
_publ_contact_author_phone ' 81-86-251-7832'
_publ_section_title
;
2-Carboxypyridinium hydrogen chloranilate
;
loop_
_publ_author_name
_publ_author_address
'Gotoh, Kazuma'
;
Department of Chemistry
Faculty of Science
Okayama University
Okayama 700-8530
Japan
;
'Nagoshi, Hirokazu'
;
Department of Chemistry
Faculty of Science
Okayama University
Okayama 700-8530
Japan
;
'Ishida, Hiroyuki'
;
Department of Chemistry
Faculty of Science
Okayama University
Okayama 700-8530
Japan
;
data_I
_chemical_name_systematic
;
2-Carboxypyridinium hydrogen chloranilate
;
_chemical_formula_moiety 'C6 H6 N O2 +, C6 H Cl2 O4 -'
_chemical_formula_sum 'C12 H7 Cl2 N O6 '
_chemical_formula_iupac 'C6 H6 N O2 +, C6 H Cl2 O4 -'
_chemical_formula_weight 332.10
_chemical_melting_point ?
_symmetry_cell_setting monoclinic
_symmetry_space_group_name_H-M 'P 21/c'
_symmetry_space_group_name_Hall '-P 2ybc'
loop_
_symmetry_equiv_pos_site_id
_symmetry_equiv_pos_as_xyz
1 '+X,+Y,+Z'
2 '-X,1/2+Y,1/2-Z'
3 '-X,-Y,-Z'
4 '+X,1/2-Y,1/2+Z'
_cell_length_a 9.4166(8)
_cell_length_b 19.6900(16)
_cell_length_c 6.7089(6)
_cell_angle_alpha 90
_cell_angle_beta 99.043(3)
_cell_angle_gamma 90
_cell_volume 1228.45(18)
_cell_formula_units_Z 4
_cell_measurement_reflns_used 7392
_cell_measurement_theta_min 3.0
_cell_measurement_theta_max 30.0
_cell_measurement_temperature 103.0(10)
_exptl_crystal_description 'platelet'
_exptl_crystal_colour 'dark purple'
_exptl_crystal_size_max 0.30
_exptl_crystal_size_mid 0.30
_exptl_crystal_size_min 0.23
_exptl_crystal_density_diffrn 1.795
_exptl_crystal_density_meas ?
_exptl_crystal_density_method 'not measured'
_exptl_crystal_F_000 672.00
_exptl_absorpt_coefficient_mu 0.557
_exptl_absorpt_correction_type 'Multi-scan'
_exptl_absorpt_process_details '(ABSCOR; Higashi, 1995)'
_exptl_absorpt_correction_T_min 0.847
_exptl_absorpt_correction_T_max 0.880
_diffrn_radiation_type 'Mo K\a'
_diffrn_radiation_wavelength 0.71075
_diffrn_measurement_device_type 'Rigaku R-AXIS RAPID-II'
_diffrn_measurement_method \w
_diffrn_detector_area_resol_mean 10.00
_diffrn_reflns_number 9710
_diffrn_reflns_av_R_equivalents 0.047
_diffrn_reflns_theta_max 30.0
_diffrn_reflns_theta_full 25.0
_diffrn_measured_fraction_theta_max 0.959
_diffrn_measured_fraction_theta_full 0.981
_diffrn_reflns_limit_h_min -13
_diffrn_reflns_limit_h_max 13
_diffrn_reflns_limit_k_min -27
_diffrn_reflns_limit_k_max 27
_diffrn_reflns_limit_l_min -8
_diffrn_reflns_limit_l_max 9
_refine_special_details
;
Refinement of F^2^ against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F^2^, conventional
R-factors R are based on F, with F set to zero for
negative F^2^. The threshold expression of F^2^ >
\s(F^2^) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F^2^ are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger.
;
_reflns_number_total 3433
_reflns_number_gt 2228
_reflns_threshold_expression I>2\s(I)
_refine_ls_structure_factor_coef Fsqd
_refine_ls_R_factor_all 0.073
_refine_ls_R_factor_gt 0.045
_refine_ls_wR_factor_gt 0.118
_refine_ls_wR_factor_ref 0.144
_refine_ls_goodness_of_fit_ref 1.10
_refine_ls_restrained_S_all 1.10
_refine_ls_number_reflns 3433
_refine_ls_number_parameters 202
_refine_ls_number_restraints 0
_refine_ls_hydrogen_treatment mixed
_refine_ls_weighting_scheme calc
_refine_ls_weighting_details
'w = 1/[\s^2^(Fo^2^)+(0.0659P)^2^+0.8975P] where P=(Fo^2^+2Fc^2^)/3'
_atom_sites_solution_hydrogens geom
_atom_sites_solution_primary direct
_atom_sites_solution_secondary difmap
_refine_ls_shift/su_max ?
_refine_ls_shift/su_max_lt 0.001
_refine_ls_shift/su_mean 0.000
_refine_diff_density_max 0.47
_refine_diff_density_min -0.92
_refine_ls_extinction_method none
_refine_ls_extinction_coef ?
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
'C' 'C' 0.0033 0.0016
'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
'H' 'H' 0.0000 0.0000
'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
'N' 'N' 0.0061 0.0033
'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
'Cl' 'Cl' 0.1484 0.1585
'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
'O' 'O' 0.0106 0.0060
'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
_computing_data_collection 'PROCESS-AUTO (Rigaku/MSC, 2004)'
_computing_cell_refinement 'PROCESS-AUTO (Rigaku/MSC, 2004)'
_computing_data_reduction 'CrystalStructure (Rigaku/MSC, 2004)'
_computing_structure_solution 'SHELXS97 (Sheldrick, 2008)'
_computing_structure_refinement 'SHELXL97 (Sheldrick, 2008)'
_computing_molecular_graphics 'ORTEP-3 (Farrugia, 1997)'
_computing_publication_material
'CrystalStructure (Rigaku/MSC, 2004) and PLATON (Spek, 2009)'
loop_
_atom_site_type_symbol
_atom_site_label
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_calc_flag
_atom_site_refinement_flags
_atom_site_occupancy
_atom_site_disorder_assembly
_atom_site_disorder_group
Cl Cl1 -0.17894(6) 0.28996(3) 0.27912(9) 0.02060(16) Uani d . 1 . .
Cl Cl2 0.46528(6) 0.29140(3) 0.10812(9) 0.02077(16) Uani d . 1 . .
O O1 0.00723(19) 0.40867(8) 0.2367(3) 0.0218(4) Uani d . 1 . .
O O2 0.01147(19) 0.17042(9) 0.2397(3) 0.0184(3) Uani d . 1 . .
O O3 0.27117(18) 0.17271(8) 0.1488(3) 0.0196(4) Uani d . 1 . .
O O4 0.27772(19) 0.41277(8) 0.1577(3) 0.0209(4) Uani d . 1 . .
O O5 0.12383(18) 0.45615(9) 0.6917(3) 0.0215(4) Uani d . 1 . .
O O6 0.3466(2) 0.47658(10) 0.8601(3) 0.0265(4) Uani d . 1 . .
N N1 0.1860(2) 0.52690(11) 0.3720(3) 0.0199(4) Uani d . 1 . .
C C1 0.0667(2) 0.35416(11) 0.2174(3) 0.0164(4) Uani d . 1 . .
C C2 -0.0036(2) 0.28950(11) 0.2347(3) 0.0160(4) Uani d . 1 . .
C C3 0.0678(2) 0.23079(11) 0.2188(3) 0.0154(4) Uani d . 1 . .
C C4 0.2206(2) 0.22965(11) 0.1715(3) 0.0155(4) Uani d . 1 . .
C C5 0.2899(2) 0.29272(11) 0.1544(4) 0.0170(4) Uani d . 1 . .
C C6 0.2232(2) 0.35480(12) 0.1732(3) 0.0165(4) Uani d . 1 . .
C C7 0.2794(3) 0.52837(12) 0.5464(4) 0.0198(5) Uani d . 1 . .
C C8 0.3984(3) 0.56970(13) 0.5626(4) 0.0229(5) Uani d . 1 . .
H H8 0.4656 0.5708 0.6840 0.027 Uiso calc R 1 . .
C C9 0.4194(3) 0.60996(13) 0.3987(4) 0.0262(5) Uani d . 1 . .
H H9 0.5010 0.6388 0.4077 0.031 Uiso calc R 1 . .
C C10 0.3206(3) 0.60759(13) 0.2230(4) 0.0268(5) Uani d . 1 . .
H H10 0.3332 0.6352 0.1109 0.032 Uiso calc R 1 . .
C C11 0.2035(3) 0.56488(13) 0.2118(4) 0.0239(5) Uani d . 1 . .
H H11 0.1357 0.5624 0.0913 0.029 Uiso calc R 1 . .
C C12 0.2418(3) 0.48289(12) 0.7090(4) 0.0195(5) Uani d . 1 . .
H H1 0.109(5) 0.498(2) 0.363(6) 0.053(11) Uiso d . 1 . .
H H2 0.071(4) 0.1437(17) 0.227(5) 0.032(9) Uiso d . 1 . .
H H6 0.319(4) 0.4534(18) 0.964(6) 0.043(10) Uiso d . 1 . .
loop_
_atom_site_aniso_label
_atom_site_aniso_U_11
_atom_site_aniso_U_22
_atom_site_aniso_U_33
_atom_site_aniso_U_12
_atom_site_aniso_U_13
_atom_site_aniso_U_23
Cl1 0.0146(3) 0.0253(3) 0.0233(3) 0.0013(2) 0.0076(2) -0.0006(2)
Cl2 0.0151(3) 0.0258(3) 0.0230(3) -0.0018(2) 0.0080(2) -0.0011(2)
O1 0.0207(8) 0.0196(8) 0.0256(9) 0.0020(7) 0.0051(7) -0.0022(7)
O2 0.0163(8) 0.0164(7) 0.0238(9) 0.0013(7) 0.0074(7) -0.0008(7)
O3 0.0176(8) 0.0201(8) 0.0220(8) 0.0016(7) 0.0063(7) -0.0008(7)
O4 0.0232(9) 0.0200(8) 0.0210(9) -0.0027(7) 0.0083(7) 0.0019(6)
O5 0.0177(8) 0.0212(8) 0.0274(9) -0.0017(7) 0.0094(7) 0.0018(7)
O6 0.0221(9) 0.0336(10) 0.0235(9) -0.0063(8) 0.0024(7) 0.0050(8)
N1 0.0145(9) 0.0229(10) 0.0229(10) -0.0018(8) 0.0050(8) 0.0000(8)
C1 0.0182(10) 0.0180(10) 0.0130(10) 0.0007(9) 0.0020(8) 0.0001(8)
C2 0.0130(10) 0.0197(10) 0.0152(10) 0.0009(8) 0.0023(8) -0.0019(8)
C3 0.0154(10) 0.0183(10) 0.0132(10) -0.0002(8) 0.0048(8) 0.0005(8)
C4 0.0149(10) 0.0193(10) 0.0132(10) 0.0009(8) 0.0048(8) 0.0003(8)
C5 0.0132(10) 0.0207(10) 0.0176(10) -0.0013(9) 0.0041(8) -0.0006(9)
C6 0.0165(10) 0.0204(10) 0.0133(10) -0.0014(9) 0.0039(8) -0.0011(8)
C7 0.0179(11) 0.0184(11) 0.0241(12) 0.0001(9) 0.0067(9) -0.0006(9)
C8 0.0188(11) 0.0236(12) 0.0272(13) 0.0000(10) 0.0066(10) -0.0018(10)
C9 0.0223(12) 0.0231(12) 0.0355(14) -0.0031(10) 0.0118(11) 0.0023(11)
C10 0.0292(13) 0.0248(12) 0.0291(13) 0.0006(11) 0.0129(11) 0.0049(10)
C11 0.0229(12) 0.0270(12) 0.0221(12) 0.0049(10) 0.0051(10) 0.0028(10)
C12 0.0210(11) 0.0193(10) 0.0197(11) -0.0002(9) 0.0076(9) -0.0021(9)
_geom_special_details
;
All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes.
;
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_site_symmetry_2
_geom_bond_distance
_geom_bond_publ_flag
Cl1 C2 . 1.723(2) ?
Cl2 C5 . 1.727(2) ?
O1 C1 . 1.227(3) ?
O2 C3 . 1.318(3) ?
O2 H2 . 0.79(3) ?
O3 C4 . 1.237(3) ?
O4 C6 . 1.263(3) ?
O5 C12 . 1.218(3) ?
O6 C12 . 1.305(3) ?
O6 H6 . 0.90(4) ?
N1 C11 . 1.340(3) ?
N1 C7 . 1.349(3) ?
N1 H1 . 0.92(4) ?
C1 C2 . 1.448(3) ?
C1 C6 . 1.548(3) ?
C2 C3 . 1.350(3) ?
C3 C4 . 1.521(3) ?
C4 C5 . 1.416(3) ?
C5 C6 . 1.389(3) ?
C7 C8 . 1.375(3) ?
C7 C12 . 1.497(3) ?
C8 C9 . 1.394(4) ?
C8 H8 . 0.9500 ?
C9 C10 . 1.383(4) ?
C9 H9 . 0.9500 ?
C10 C11 . 1.379(4) ?
C10 H10 . 0.9500 ?
C11 H11 . 0.9500 ?
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle_site_symmetry_1
_geom_angle_site_symmetry_3
_geom_angle
_geom_angle_publ_flag
C3 O2 H2 . . 107(3) ?
C12 O6 H6 . . 112(2) ?
C11 N1 C7 . . 122.5(2) ?
C11 N1 H1 . . 119(2) ?
C7 N1 H1 . . 118(2) ?
O1 C1 C2 . . 122.6(2) ?
O1 C1 C6 . . 118.5(2) ?
C2 C1 C6 . . 118.91(19) ?
C3 C2 C1 . . 120.4(2) ?
C3 C2 Cl1 . . 121.40(18) ?
C1 C2 Cl1 . . 118.15(17) ?
O2 C3 C2 . . 123.3(2) ?
O2 C3 C4 . . 114.75(19) ?
C2 C3 C4 . . 121.9(2) ?
O3 C4 C5 . . 126.4(2) ?
O3 C4 C3 . . 115.7(2) ?
C5 C4 C3 . . 117.85(19) ?
C6 C5 C4 . . 122.9(2) ?
C6 C5 Cl2 . . 119.23(17) ?
C4 C5 Cl2 . . 117.86(17) ?
O4 C6 C5 . . 126.3(2) ?
O4 C6 C1 . . 115.8(2) ?
C5 C6 C1 . . 117.90(19) ?
N1 C7 C8 . . 119.6(2) ?
N1 C7 C12 . . 115.0(2) ?
C8 C7 C12 . . 125.4(2) ?
C7 C8 C9 . . 119.3(2) ?
C7 C8 H8 . . 120.4 ?
C9 C8 H8 . . 120.4 ?
C10 C9 C8 . . 119.5(2) ?
C10 C9 H9 . . 120.2 ?
C8 C9 H9 . . 120.2 ?
C11 C10 C9 . . 119.5(2) ?
C11 C10 H10 . . 120.3 ?
C9 C10 H10 . . 120.3 ?
N1 C11 C10 . . 119.7(2) ?
N1 C11 H11 . . 120.2 ?
C10 C11 H11 . . 120.2 ?
O5 C12 O6 . . 126.9(2) ?
O5 C12 C7 . . 120.4(2) ?
O6 C12 C7 . . 112.7(2) ?
loop_
_geom_torsion_atom_site_label_1
_geom_torsion_atom_site_label_2
_geom_torsion_atom_site_label_3
_geom_torsion_atom_site_label_4
_geom_torsion_site_symmetry_1
_geom_torsion_site_symmetry_2
_geom_torsion_site_symmetry_3
_geom_torsion_site_symmetry_4
_geom_torsion
_geom_torsion_publ_flag
O1 C1 C2 C3 . . . . -177.9(2) ?
C6 C1 C2 C3 . . . . 2.1(3) ?
O1 C1 C2 Cl1 . . . . 1.3(3) ?
C6 C1 C2 Cl1 . . . . -178.77(16) ?
C1 C2 C3 O2 . . . . 177.7(2) ?
Cl1 C2 C3 O2 . . . . -1.4(3) ?
C1 C2 C3 C4 . . . . -3.3(3) ?
Cl1 C2 C3 C4 . . . . 177.58(16) ?
O2 C3 C4 O3 . . . . 3.3(3) ?
C2 C3 C4 O3 . . . . -175.8(2) ?
O2 C3 C4 C5 . . . . -177.73(19) ?
C2 C3 C4 C5 . . . . 3.2(3) ?
O3 C4 C5 C6 . . . . 177.0(2) ?
C3 C4 C5 C6 . . . . -1.8(3) ?
O3 C4 C5 Cl2 . . . . -3.0(3) ?
C3 C4 C5 Cl2 . . . . 178.11(16) ?
C4 C5 C6 O4 . . . . -179.2(2) ?
Cl2 C5 C6 O4 . . . . 0.8(3) ?
C4 C5 C6 C1 . . . . 0.7(3) ?
Cl2 C5 C6 C1 . . . . -179.21(16) ?
O1 C1 C6 O4 . . . . -0.9(3) ?
C2 C1 C6 O4 . . . . 179.2(2) ?
O1 C1 C6 C5 . . . . 179.2(2) ?
C2 C1 C6 C5 . . . . -0.7(3) ?
C11 N1 C7 C8 . . . . -0.6(4) ?
C11 N1 C7 C12 . . . . 179.6(2) ?
N1 C7 C8 C9 . . . . 0.7(4) ?
C12 C7 C8 C9 . . . . -179.5(2) ?
C7 C8 C9 C10 . . . . -0.1(4) ?
C8 C9 C10 C11 . . . . -0.7(4) ?
C7 N1 C11 C10 . . . . -0.2(4) ?
C9 C10 C11 N1 . . . . 0.8(4) ?
N1 C7 C12 O5 . . . . -11.4(3) ?
C8 C7 C12 O5 . . . . 168.8(2) ?
N1 C7 C12 O6 . . . . 168.4(2) ?
C8 C7 C12 O6 . . . . -11.4(3) ?
loop_
_geom_hbond_atom_site_label_D
_geom_hbond_atom_site_label_H
_geom_hbond_atom_site_label_A
_geom_hbond_site_symmetry_A
_geom_hbond_distance_DH
_geom_hbond_distance_HA
_geom_hbond_distance_DA
_geom_hbond_angle_DHA
_geom_hbond_publ_flag
N1 H1 O1 . 0.92(4) 2.11(3) 2.932(2) 147(3) y
N1 H1 O5 . 0.92(4) 2.33(4) 2.698(2) 103(2) n
N1 H1 O5 3_566 0.92(4) 2.34(4) 2.900(2) 119(3) n
O2 H2 O3 . 0.79(3) 2.11(3) 2.612(2) 122(3) n
O2 H2 O5 4_554 0.79(3) 2.05(3) 2.746(2) 148(3) y
O6 H6 O4 1_556 0.90(3) 1.63(3) 2.528(2) 177.1(15) y
C8 H8 O4 3_666 0.95 2.50 3.338(3) 147 y
C9 H9 O3 2_655 0.95 2.33 3.227(3) 156 y
C11 H11 O1 3_565 0.95 2.46 3.374(3) 162 y