Supplementary material for Nei et al. (February 20, 2001) Proc. Natl. Acad. Sci. USA, 10.1073/pnas.051611498
Table 4.
11 protein sequence data used for estimation of early divergence timeProtein | Human | Rat | Chicken | Drosophila | Nematode | Fungi (yeast) | Plants (Arabidopsis) | Protists (Plasmodium falciparum) | Eubacteria (E. coli) |
Intermediary metabolism | |||||||||
L-LACTATE DEHYDROGENASE (EC 1.1.1.27) | RD* | NP_036727 † | RD | RD | RD | T50135 | RD (maize) | AAC46863 | RD (Cyanobacterium synechocystis) |
ALDEHYDE DEHYDROGENASE (NAD+) (EC 1.2.1.3) | RD | RD | RD | AAF52769 | RD | RD | RD (maize) | RD (Sauroleishmania tarentolae) | RD |
PYRUVATE KINASE (EC 2.7.1.40) | RD | KIRTPR | RD | O62619 | RD | RD | RD (soy bean) | RD (Trypanosoma brucei) | RD |
PHOSPHOGLYCERATE KINASE (EC 2.7.2.3) | RD | RD | I50407 | RD | RD | RD | P50318 | RD | RD |
ENOLASE (EC 4.2.1.11) | RD | RD | RD (duck) | RD | RD | RD | RD | RD | RD |
TRIOSE-PHOSPHATE ISOMERASE (EC 5.3.1.1) | RD | AAA42278 | RD | RD | RD | RD | RD (maize) | RD (Trypanosoma brucei) | RD |
Biosynthesis of small molecules | |||||||||
NUCLEOSIDE-DIPHOSPHATE KINASE (EC 2.7.4.6) | RD | RD | AAB99856 | RD | RD | RD | RD | AAD48446 (Trypanosoma brucei) | RD |
DIHYDROFOLATE REDUCTASE (EC 1.5.1.3) | RD | RD | RD | AAF55324 | Q93341 | RD | RD | RD | RD |
Macromolecule metabolism | |||||||||
REPLICATION FACTOR C | NP_002905 | g11177922 (Mouse) | P53033 | P53034 | AAB88360 | T37746 | AAF18689 | H71604 | AAC07663 (Aquifex aeolicus) |
Adaptations to atypical conditions | |||||||||
HEAT SHOCK PROTEIN HSP70 | AAD11466 | NP_068635 | P08106 | P11147 | T21394 | NP_011029 | BAB02269 | P11144 | P04475 (E. coli) |
*These data were obtained from an ftp site (ftp://juno.ucsd.edu/) (R. Doolittle data).
†Accession numbers from Protein Databases.