\begin{table} \begin{center} \begin{tabular}{|c|c|c|c|} \hline &&&\\ & {\bf P1} & { \bf P2} & {\bf P3} \\ &&&\\ \hline\hline &&&\\ {\bf ISC Site} & Aberdeen & Edinburgh & Cardiff \\ &&&\\ \hline &&&\\ {\bf Ancestry} & Scotland & South East Scotland & Bulgaria \\ &&&\\ \hline &&&\\ {\bf Sample Size} & 702 & 287 & 611 \\ &&&\\ \hline &&&\\ {\bf SNPs} & 5739 & 5739 & 5739 \\ &&&\\ \hline \hline &&&\\ {\bf Array} & Affymetrix 5.0 & Affymetrix 6.0 & Affymetrix 6.0\\ &&&\\ \hline &&&\\ {\bf MAF} & $> 0.01$ & $> 0.01$ & $> 0.01$ \\ &&&\\ \hline &&&\\ {\bf ID Call Rate} & $ > 0.95 $ & $> 0.95$ & $ > 0.95$ \\ &&&\\ \hline &&&\\ {\bf Missing Data} & Retained & Retained & Retained \\ &&&\\ \hline \hline &&&\\ {\bf LD window} & 50 & 50 & 50\\ &&&\\ \hline &&&\\ {\bf Shift} & 5 & 5 & 5\\ &&&\\ \hline &&&\\ {\bf $r^2$} & $< 0.2$ & $< 0.2$ & $< 0.2$ \\ &&&\\ \hline \end{tabular} %\caption*[Reduced Data]{Table S1: Parameters of the reduced dataset used for analysis} \caption*{{\bf Table S1}: Parameters of the reduced dataset used for analysis} \label{REDDAT} \end{center} \end{table}