Pfam name link r_O r_D number of sequences go molecular function go biological process go cellular component kegg number of seqs with repeats PF00973_0 Paramyxovirus nucleocapsid protein http://panditplus.org/show.php?in=PF00973&show=family 0.511224 4.698911 9 structural molecule activity [GO:0005198] viral nucleocapsid [GO:0019013] 6 PF07714_1 Protein tyrosine kinase http://panditplus.org/show.php?in=PF07714&show=family 2.754217 19.983162 10 protein tyrosine kinase activity [GO:0004713],ATP binding [GO:0005524] protein amino acid phosphorylation [GO:0006468] Fructose and mannose metabolism,Ubiquinone and menaquinone biosynthesis,Purine metabolism,Methionine metabolism,N-Glycan biosynthesis,Aminosugars metabolism,Thiamine metabolism,Riboflavin metabolism,Porphyrin and chlorophyll metabolism,Flagellar assembly,DNA replication,Proteasome,PPAR signaling pathway,Base excision repair,Nucleotide excision repair,Homologous recombination,MAPK signaling pathway,MAPK signaling pathway - yeast,ErbB signaling pathway,Calcium signaling pathway,Cytokine-cytokine receptor interaction,Phosphatidylinositol signaling system,Cell cycle,Cell cycle - yeast,p53 signaling pathway,Ubiquitin mediated proteolysis,Regulation of autophagy,mTOR signaling pathway,Apoptosis,Wnt signaling pathway,Dorso-ventral axis formation,Hedgehog signaling pathway,TGF-beta signaling pathway,Axon guidance,VEGF signaling pathway,Focal adhesion,Adherens junction,Tight junction,Gap junction,Toll-like receptor signaling pathway,Jak-STAT signaling pathway,Hematopoietic cell lineage,Natural killer cell mediated cytotoxicity,T cell receptor signaling pathway,B cell receptor signaling pathway,Fc epsilon RI signaling pathway,Leukocyte transendothelial migration,Circadian rhythm,Long-term potentiation,Long-term depression,Olfactory transduction,Taste transduction,Regulation of actin cytoskeleton,Insulin signaling pathway,GnRH signaling pathway,Progesterone-mediated oocyte maturation,Melanogenesis,Adipocytokine signaling pathway,Type II diabetes mellitus,Alzheimer's disease,Parkinson's disease,Amyotrophic lateral sclerosis (ALS),Vibrio cholerae infection,Epithelial cell signaling in Helicobacter pylori infection,Pathogenic Escherichia coli infection,Pathways in cancer,Colorectal cancer,Renal cell carcinoma,Pancreatic cancer,Endometrial cancer,Glioma,Prostate cancer,Thyroid Cancer,Basal cell carcinoma,Melanoma,Bladder cancer,Chronic myeloid leukemia,Acute myeloid leukemia,Small cell lung cancer,Non-small cell lung cancer,Primary immunodeficiency 2 PF05051_0 Cytochrome C oxidase copper chaperone (COX17) http://panditplus.org/show.php?in=PF05051&show=family 0.911793 5.843198 5 copper ion binding [GO:0005507],copper chaperone activity [GO:0016531] copper ion transport [GO:0006825] mitochondrial intermembrane space [GO:0005758] Citrate cycle (TCA cycle),Pentose and glucuronate interconversions,Ascorbate and aldarate metabolism,Oxidative phosphorylation,Glycine, serine and threonine metabolism,beta-Alanine metabolism,Starch and sucrose metabolism,Nucleotide sugars metabolism,Butanoate metabolism,One carbon pool by folate,Reductive carboxylate cycle (CO2 fixation),Pantothenate and CoA biosynthesis,Nitrogen metabolism,Alkaloid biosynthesis II,ABC transporters,Two-component system,Flagellar assembly,Ribosome,Type III secretion system,Ubiquitin mediated proteolysis,Wnt signaling pathway 0 PF02287_0 Dehydratase small subunit http://panditplus.org/show.php?in=PF02287&show=family 0.927601 5.212521 3 Purine metabolism,Glycerolipid metabolism 0 PF04386_0 Stringent starvation protein B http://panditplus.org/show.php?in=PF04386&show=family 0.727135 3.727334 3 Purine metabolism,Pyrimidine metabolism,Valine, leucine and isoleucine biosynthesis,gamma-Hexachlorocyclohexane degradation,Bisphenol A degradation,Phenylalanine, tyrosine and tryptophan biosynthesis,1- and 2-Methylnaphthalene degradation,Naphthalene and anthracene degradation,Benzoate degradation via CoA ligation,Porphyrin and chlorophyll metabolism,Limonene and pinene degradation,Aminoacyl-tRNA biosynthesis,Two-component system,RNA polymerase 0 PF00870_0 P53 DNA-binding domain http://panditplus.org/show.php?in=PF00870&show=family 0.935463 3.953762 5 DNA binding [GO:0003677],transcription factor activity [GO:0003700] regulation of transcription, DNA-dependent [GO:0006355] nucleus [GO:0005634] MAPK signaling pathway,Cell cycle,p53 signaling pathway,Apoptosis,Wnt signaling pathway,Amyotrophic lateral sclerosis (ALS),Huntington's disease,Pathways in cancer,Colorectal cancer,Pancreatic cancer,Endometrial cancer,Glioma,Prostate cancer,Thyroid Cancer,Basal cell carcinoma,Melanoma,Bladder cancer,Chronic myeloid leukemia,Small cell lung cancer,Non-small cell lung cancer 0 PF01025_0 GrpE http://panditplus.org/show.php?in=PF01025&show=family 1.52805 6.382919 3 chaperone binding [GO:0051087],adenyl-nucleotide exchange factor activity [GO:0000774],protein homodimerization activity [GO:0042803] protein folding [GO:0006457],protein import into mitochondrial matrix [GO:0030150] mitochondrion [GO:0005739] Fatty acid biosynthesis,Oxidative phosphorylation,Urea cycle and metabolism of amino groups,Purine metabolism,Glutamate metabolism,Alanine and aspartate metabolism,Glycine, serine and threonine metabolism,Arginine and proline metabolism,Peptidoglycan biosynthesis,Glyoxylate and dicarboxylate metabolism,Porphyrin and chlorophyll metabolism,Aminoacyl-tRNA biosynthesis,Two-component system,Bacterial chemotaxis,Flagellar assembly,Ribosome,DNA replication,Proteasome,Protein export,Type III secretion system,Type IV secretion system,Nucleotide excision repair,Cell cycle - yeast,Tight junction,Antigen processing and presentation,Prostate cancer 0 PF00190_0 Cupin http://panditplus.org/show.php?in=PF00190&show=family 1.580364 6.525698 4 nutrient reservoir activity [GO:0045735] Glycolysis / Gluconeogenesis,Citrate cycle (TCA cycle),Pentose phosphate pathway,Fructose and mannose metabolism,Pyrimidine metabolism,Alanine and aspartate metabolism,Glycine, serine and threonine metabolism,Methionine metabolism,Tyrosine metabolism,1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation,Benzoate degradation via hydroxylation,Tryptophan metabolism,Phenylalanine, tyrosine and tryptophan biosynthesis,Selenoamino acid metabolism,Starch and sucrose metabolism,Nucleotide sugars metabolism,Streptomycin biosynthesis,Polyketide sugar unit biosynthesis,Arachidonic acid metabolism,Pyruvate metabolism,2,4-Dichlorobenzoate degradation,Naphthalene and anthracene degradation,Fluorene degradation,Glyoxylate and dicarboxylate metabolism,Styrene degradation,Carbon fixation in photosynthetic organisms,Folate biosynthesis,Aminoacyl-tRNA biosynthesis,ABC transporters,Two-component system 0 PF02263_0 Guanylate-binding protein, N-terminal domain http://panditplus.org/show.php?in=PF02263&show=family 2.001173 7.573748 9 GTP binding [GO:0005525],GTPase activity [GO:0003924] Oxidative phosphorylation,Inositol phosphate metabolism,ABC transporters,Phosphatidylinositol signaling system 1 PF01504_0 Phosphatidylinositol-4-phosphate 5-Kinase http://panditplus.org/show.php?in=PF01504&show=family 0.554573 2.06213 3 phosphatidylinositol phosphate kinase activity [GO:0016307] phosphatidylinositol metabolic process [GO:0046488] Inositol phosphate metabolism,Phosphatidylinositol signaling system,Focal adhesion,Regulation of actin cytoskeleton 1 PF00135_1 Carboxylesterase http://panditplus.org/show.php?in=PF00135&show=family 0.856826 3.13914 3 Bile acid biosynthesis,Glycerolipid metabolism,Glycerophospholipid metabolism,2,4-Dichlorobenzoate degradation,Alkaloid biosynthesis II,Insect hormone biosynthesis,Drug metabolism - other enzymes,Cell adhesion molecules (CAMs),Autoimmune thyroid disease 0 PF03441_0 FAD binding domain of DNA photolyase http://panditplus.org/show.php?in=PF03441&show=family 0.930716 2.945184 3 DNA photolyase activity [GO:0003913] DNA repair [GO:0006281] Pentose phosphate pathway,Lysine biosynthesis,Phenylalanine metabolism,Glutathione metabolism,Starch and sucrose metabolism,Styrene degradation,Porphyrin and chlorophyll metabolism,Aminoacyl-tRNA biosynthesis,Drug metabolism - cytochrome P450,ABC transporters,Two-component system,DNA replication,Protein export,Nucleotide excision repair,Mismatch repair,Homologous recombination,MAPK signaling pathway,Calcium signaling pathway,Apoptosis,Wnt signaling pathway,Hedgehog signaling pathway,Circadian rhythm 0 PF07724_0 ATPase family associated with various cellular activities (AAA) http://panditplus.org/show.php?in=PF07724&show=family 5.484199 17.092988 28 ATP binding [GO:0005524] Oxidative phosphorylation,Purine metabolism,Pyrimidine metabolism,Lysine degradation,Phenylalanine metabolism,Phenylalanine, tyrosine and tryptophan biosynthesis,Selenoamino acid metabolism,Nucleotide sugars metabolism,Streptomycin biosynthesis,Polyketide sugar unit biosynthesis,Glyoxylate and dicarboxylate metabolism,One carbon pool by folate,Methane metabolism,Thiamine metabolism,Biotin metabolism,Folate biosynthesis,Porphyrin and chlorophyll metabolism,Nitrogen metabolism,Sulfur metabolism,ABC transporters,Two-component system,Bacterial chemotaxis,Flagellar assembly,Basal transcription factors,DNA replication,Proteasome,Protein export,Type IV secretion system,Type II secretion system,Nucleotide excision repair,Mismatch repair,Homologous recombination,Cell cycle,Cell cycle - yeast,Wnt signaling pathway,Vibrio cholerae phathogenic cycle 4 PF05927_0 Penaeidin http://panditplus.org/show.php?in=PF05927&show=family 0.549083 1.577285 3 chitin binding [GO:0008061] cytoplasm [GO:0005737] Galactose metabolism,Lysine biosynthesis,Nucleotide sugars metabolism,Aminoacyl-tRNA biosynthesis,DNA replication,Nucleotide excision repair,Mismatch repair,Wnt signaling pathway,Hedgehog signaling pathway,Melanogenesis,Pathways in cancer,Basal cell carcinoma 0 PF00424_0 REV protein (anti-repression trans-activator protein) http://panditplus.org/show.php?in=PF00424&show=family 0.598561 1.6866 3 transcription factor activity [GO:0003700] regulation of transcription, DNA-dependent [GO:0006355] host cell nucleus [GO:0042025] Fatty acid metabolism,Pyrimidine metabolism,Methionine metabolism,Valine, leucine and isoleucine degradation,Geraniol degradation,Lysine degradation,Tryptophan metabolism,beta-Alanine metabolism,Selenoamino acid metabolism,Benzoate degradation via CoA ligation,Propanoate metabolism,Butanoate metabolism,Folate biosynthesis,Limonene and pinene degradation,Caprolactam degradation,Aminoacyl-tRNA biosynthesis,ABC transporters,Two-component system,Flagellar assembly,RNA polymerase,DNA replication,Base excision repair,Nucleotide excision repair,Mismatch repair,Homologous recombination,ErbB signaling pathway,Phosphatidylinositol signaling system,Ubiquitin mediated proteolysis,mTOR signaling pathway,Apoptosis,VEGF signaling pathway,Focal adhesion,ECM-receptor interaction,Toll-like receptor signaling pathway,Jak-STAT signaling pathway,Natural killer cell mediated cytotoxicity,T cell receptor signaling pathway,B cell receptor signaling pathway,Fc epsilon RI signaling pathway,Leukocyte transendothelial migration,Regulation of actin cytoskeleton,Insulin signaling pathway,Type II diabetes mellitus,Pathways in cancer,Colorectal cancer,Renal cell carcinoma,Pancreatic cancer,Endometrial cancer,Glioma,Prostate cancer,Thyroid Cancer,Melanoma,Chronic myeloid leukemia,Acute myeloid leukemia,Small cell lung cancer,Non-small cell lung cancer 1 PF00538_0 linker histone H1 and H5 family http://panditplus.org/show.php?in=PF00538&show=family 2.71527 7.409366652 6 DNA binding [GO:0003677] nucleosome assembly [GO:0006334] nucleus [GO:0005634],nucleosome [GO:0000786] Biosynthesis of steroids,Oxidative phosphorylation,Alanine and aspartate metabolism,gamma-Hexachlorocyclohexane degradation,Glycerophospholipid metabolism,Folate biosynthesis,Aminoacyl-tRNA biosynthesis,Two-component system,Ribosome,Proteasome,Cytokine-cytokine receptor interaction,Cell cycle - yeast,TGF-beta signaling pathway,Axon guidance,Focal adhesion,Adherens junction,Pathways in cancer,Colorectal cancer,Renal cell carcinoma,Melanoma 1 PF00063_0 Myosin head (motor domain) http://panditplus.org/show.php?in=PF00063&show=family 2.769174 7.418781 9 ATP binding [GO:0005524],motor activity [GO:0003774] myosin complex [GO:0016459] Purine metabolism,Aminosugars metabolism,Tight junction,Regulation of actin cytoskeleton 2 PF07686_0 Immunoglobulin V-set domain http://panditplus.org/show.php?in=PF07686&show=family 2.025696 4.961917 5 Glycolysis / Gluconeogenesis,Purine metabolism,Pyrimidine metabolism,Lysine degradation,Phenylalanine metabolism,Starch and sucrose metabolism,Aminosugars metabolism,Methane metabolism,DNA replication,Base excision repair,Nucleotide excision repair,Mismatch repair,Homologous recombination,Non-homologous end-joining,MAPK signaling pathway,ErbB signaling pathway,Calcium signaling pathway,Cytokine-cytokine receptor interaction,Cell cycle,Ubiquitin mediated proteolysis,Apoptosis,TGF-beta signaling pathway,Axon guidance,VEGF signaling pathway,Focal adhesion,ECM-receptor interaction,Cell adhesion molecules (CAMs),Adherens junction,Tight junction,Gap junction,Antigen processing and presentation,Toll-like receptor signaling pathway,Jak-STAT signaling pathway,Hematopoietic cell lineage,Natural killer cell mediated cytotoxicity,T cell receptor signaling pathway,B cell receptor signaling pathway,Fc epsilon RI signaling pathway,Leukocyte transendothelial migration,Olfactory transduction,Regulation of actin cytoskeleton,Insulin signaling pathway,Melanogenesis,Type I diabetes mellitus,Alzheimer's disease,Epithelial cell signaling in Helicobacter pylori infection,Pathways in cancer,Colorectal cancer,Glioma,Prostate cancer,Melanoma,Bladder cancer,Acute myeloid leukemia,Asthma,Autoimmune thyroid disease,Systemic lupus erythematosus,Allograft rejection,Graft-versus-host disease,Primary immunodeficiency 1 PF03372_0 Endonuclease/Exonuclease/phosphatase family http://panditplus.org/show.php?in=PF03372&show=family 1.594481 3.841291 4 Fructose and mannose metabolism,Purine metabolism,Pyrimidine metabolism,Glycine, serine and threonine metabolism,Aminosugars metabolism,Inositol phosphate metabolism,Glycerophospholipid metabolism,Ether lipid metabolism,Sphingolipid metabolism,Thiamine metabolism,Riboflavin metabolism,Pantothenate and CoA biosynthesis,RNA polymerase,Base excision repair,Phosphatidylinositol signaling system,p53 signaling pathway,B cell receptor signaling pathway,Fc epsilon RI signaling pathway,Insulin signaling pathway 0 PF00693_0 Thymidine kinase from herpesvirus http://panditplus.org/show.php?in=PF00693&show=family 0.999132 2.401962 3 ATP binding [GO:0005524],thymidine kinase activity [GO:0004797] TMP biosynthetic process [GO:0006230] Citrate cycle (TCA cycle),Pentose phosphate pathway,Oxidative phosphorylation,Purine metabolism,Pyrimidine metabolism,D-Glutamine and D-glutamate metabolism,Aminosugars metabolism,Peptidoglycan biosynthesis,Carbon fixation in photosynthetic organisms,Reductive carboxylate cycle (CO2 fixation),Pantothenate and CoA biosynthesis,Porphyrin and chlorophyll metabolism,Drug metabolism - other enzymes,ABC transporters,Two-component system,Flagellar assembly,DNA replication,Protein export,Type III secretion system,Type II secretion system,Nucleotide excision repair,Mismatch repair,Homologous recombination 0 PF05454_0 Dystroglycan (Dystrophin-associated glycoprotein 1) http://panditplus.org/show.php?in=PF05454&show=family 0.618627 1.48185 3 protein binding [GO:0005515] ECM-receptor interaction 3 PF00503_0 G-protein alpha subunit http://panditplus.org/show.php?in=PF00503&show=family 1.397632 3.282395 5 guanyl nucleotide binding [GO:0019001],signal transducer activity [GO:0004871] G-protein coupled receptor protein signaling pathway [GO:0007186] Pyrimidine metabolism,Glutamate metabolism,Arginine and proline metabolism,Phenylalanine, tyrosine and tryptophan biosynthesis,Aminoacyl-tRNA biosynthesis,Drug metabolism - other enzymes,ABC transporters,Flagellar assembly,Phosphotransferase system (PTS),DNA replication,Proteasome,Mismatch repair,MAPK signaling pathway,MAPK signaling pathway - yeast,Calcium signaling pathway,Cell cycle,Cell cycle - yeast,Axon guidance,Tight junction,Gap junction,Leukocyte transendothelial migration,Long-term potentiation,Long-term depression,Olfactory transduction,Taste transduction,Regulation of actin cytoskeleton,GnRH signaling pathway,Progesterone-mediated oocyte maturation,Melanogenesis,Alzheimer's disease,Huntington's disease,Vibrio cholerae infection 0 PF00711_0 Beta defensin http://panditplus.org/show.php?in=PF00711&show=family 2.264958 5.110604 10 defense response [GO:0006952] extracellular region [GO:0005576] Trinitrotoluene degradation,Methane metabolism,Notch signaling pathway 0 PF00469_0 Negative factor, (F-Protein) or Nef http://panditplus.org/show.php?in=PF00469&show=family 0.766451 1.469178 8 GTP binding [GO:0005525] Methionine metabolism,RNA polymerase,Ubiquitin mediated proteolysis 0 PF03870_0 RNA polymerase Rpb8 http://panditplus.org/show.php?in=PF03870&show=family 1.246927 2.374973 4 transcription [GO:0006350] Purine metabolism,Pyrimidine metabolism,Glutamate metabolism,Methionine metabolism,Arginine and proline metabolism,N-Glycan biosynthesis,One carbon pool by folate,Thiamine metabolism,Aminoacyl-tRNA biosynthesis,RNA polymerase,Protein export,Nucleotide excision repair,Huntington's disease 0 PF00587_1 tRNA synthetase class II core domain (G, H, P, S and T) http://panditplus.org/show.php?in=PF00587&show=family 0.992065 1.841073 3 ATP binding [GO:0005524],nucleotide binding [GO:0000166],aminoacyl-tRNA ligase activity [GO:0004812] tRNA aminoacylation for protein translation [GO:0006418],translation [GO:0006412] cytoplasm [GO:0005737] Glycolysis / Gluconeogenesis,Citrate cycle (TCA cycle),Oxidative phosphorylation,Purine metabolism,Pyrimidine metabolism,Glutamate metabolism,Alanine and aspartate metabolism,Glycine, serine and threonine metabolism,Geraniol degradation,Lysine biosynthesis,Arginine and proline metabolism,Histidine metabolism,Phenylalanine, tyrosine and tryptophan biosynthesis,Pyruvate metabolism,1- and 2-Methylnaphthalene degradation,Naphthalene and anthracene degradation,Trinitrotoluene degradation,Propanoate metabolism,Butanoate metabolism,Reductive carboxylate cycle (CO2 fixation),Porphyrin and chlorophyll metabolism,Limonene and pinene degradation,Aminoacyl-tRNA biosynthesis,Two-component system,DNA replication,Mismatch repair,Homologous recombination 0 PF03068_0 Protein-arginine deiminase (PAD) http://panditplus.org/show.php?in=PF03068&show=family 2.024378 3.627048 7 calcium ion binding [GO:0005509],protein-arginine deiminase activity [GO:0004668] cytoplasm [GO:0005737] DNA replication,Base excision repair,Nucleotide excision repair,Mismatch repair 0 PF01028_0 Eukaryotic DNA topoisomerase I, catalytic core http://panditplus.org/show.php?in=PF01028&show=family 2.763091 4.742297 19 DNA binding [GO:0003677],DNA topoisomerase (ATP-hydrolyzing) activity [GO:0003918] DNA topological change [GO:0006265] chromosome [GO:0005694] Starch and sucrose metabolism,Lipopolysaccharide biosynthesis,Two-component system,Nucleotide excision repair,Mismatch repair,Cell cycle - yeast,Ubiquitin mediated proteolysis,Focal adhesion,ECM-receptor interaction,Pathways in cancer,Small cell lung cancer 0 PF00509_0 Hemagglutinin http://panditplus.org/show.php?in=PF00509&show=family 2.454927 3.815818 9 host cell surface receptor binding [GO:0046789] viral envelope fusion with host membrane [GO:0019064] viral envelope [GO:0019031] 2 PF00718_0 Polyomavirus coat protein http://panditplus.org/show.php?in=PF00718&show=family 2.447142 3.706206 8 structural molecule activity [GO:0005198] viral capsid [GO:0019028] 0 PF00303_0 Thymidylate synthase http://panditplus.org/show.php?in=PF00303&show=family 3.120241 4.530389 12 thymidylate synthase activity [GO:0004799] dTMP biosynthetic process [GO:0006231] Pyrimidine metabolism,D-Glutamine and D-glutamate metabolism,Peptidoglycan biosynthesis,One carbon pool by folate,Folate biosynthesis 1 PF00298_0 Ribosomal protein L11, RNA binding domain http://panditplus.org/show.php?in=PF00298&show=family 2.987613 3.913485 9 structural constituent of ribosome [GO:0003735] translation [GO:0006412] ribosome [GO:0005840],intracellular [GO:0005622] Pyrimidine metabolism,Alanine and aspartate metabolism,Cyanoamino acid metabolism,Glycerolipid metabolism,Trinitrotoluene degradation,Methane metabolism,Nitrogen metabolism,Drug metabolism - other enzymes,Phosphotransferase system (PTS),Ribosome 0 PF00452_0 Apoptosis regulator proteins, Bcl-2 family http://panditplus.org/show.php?in=PF00452&show=family 0.955601 1.206302 4 regulation of apoptosis [GO:0042981] Arginine and proline metabolism,p53 signaling pathway,Apoptosis,Focal adhesion,Jak-STAT signaling pathway,Amyotrophic lateral sclerosis (ALS),Huntington's disease,Pathways in cancer,Colorectal cancer,Pancreatic cancer,Prostate cancer,Chronic myeloid leukemia,Small cell lung cancer 0 PF00262_0 Calreticulin family http://panditplus.org/show.php?in=PF00262&show=family 1.288355 1.5942 6 calcium ion binding [GO:0005509] Glycolysis / Gluconeogenesis,Citrate cycle (TCA cycle),Aminosugars metabolism,Pyruvate metabolism,Homologous recombination,Antigen processing and presentation 5 PF00071_0 Ras family http://panditplus.org/show.php?in=PF00071&show=family 2.44753 3.00149 11 Pentose phosphate pathway,Purine metabolism,Pyrimidine metabolism,Glycine, serine and threonine metabolism,Phenylalanine, tyrosine and tryptophan biosynthesis,Selenoamino acid metabolism,Nicotinate and nicotinamide metabolism,Sulfur metabolism,Aminoacyl-tRNA biosynthesis,ABC transporters,RNA polymerase,DNA replication,Protein export,Type IV secretion system,Type II secretion system,Nucleotide excision repair,Mismatch repair,MAPK signaling pathway,MAPK signaling pathway - yeast,ErbB signaling pathway,Cell cycle - yeast,Ubiquitin mediated proteolysis,mTOR signaling pathway,Wnt signaling pathway,Dorso-ventral axis formation,Hedgehog signaling pathway,TGF-beta signaling pathway,Axon guidance,VEGF signaling pathway,Focal adhesion,Adherens junction,Tight junction,Gap junction,Toll-like receptor signaling pathway,Natural killer cell mediated cytotoxicity,T cell receptor signaling pathway,B cell receptor signaling pathway,Fc epsilon RI signaling pathway,Leukocyte transendothelial migration,Long-term potentiation,Long-term depression,Regulation of actin cytoskeleton,Insulin signaling pathway,GnRH signaling pathway,Progesterone-mediated oocyte maturation,Melanogenesis,Parkinson's disease,Amyotrophic lateral sclerosis (ALS),Vibrio cholerae infection,Epithelial cell signaling in Helicobacter pylori infection,Pathogenic Escherichia coli infection,Pathways in cancer,Colorectal cancer,Renal cell carcinoma,Pancreatic cancer,Endometrial cancer,Glioma,Prostate cancer,Thyroid Cancer,Melanoma,Bladder cancer,Chronic myeloid leukemia,Acute myeloid leukemia,Non-small cell lung cancer 0 PF01289_0 Thiol-activated cytolysin http://panditplus.org/show.php?in=PF01289&show=family 1.932545 2.338445 6 cholesterol binding [GO:0015485] pathogenesis [GO:0009405] Type II secretion system 1 PF06134_0 L-rhamnose isomerase (RhaA) http://panditplus.org/show.php?in=PF06134&show=family 1.249225 1.452349 5 L-rhamnose isomerase activity [GO:0008740],manganese ion binding [GO:0030145] rhamnose metabolic process [GO:0019299] Pentose and glucuronate interconversions,Fructose and mannose metabolism,Purine metabolism,Pyrimidine metabolism,Alanine and aspartate metabolism,Arginine and proline metabolism,Nitrogen metabolism,Aminoacyl-tRNA biosynthesis,Biosynthesis of ansamycins,DNA replication,Mismatch repair,Homologous recombination 0 PF01653_0 NAD-dependent DNA ligase adenylation domain http://panditplus.org/show.php?in=PF01653&show=family 3.882241 4.505935 8 DNA ligase (NAD+) activity [GO:0003911] Purine metabolism,Pyrimidine metabolism,Phenylalanine metabolism,RNA polymerase,DNA replication,Base excision repair,Nucleotide excision repair,Mismatch repair,Homologous recombination 0 PF00062_0 C-type lysozyme/alpha-lactalbumin family http://panditplus.org/show.php?in=PF00062&show=family 2.867792 3.303994 12 Galactose metabolism,Starch and sucrose metabolism,Aminosugars metabolism 0 PF02246_0 Protein L b1 domain http://panditplus.org/show.php?in=PF02246&show=family 0.552669 0.623364 3 Purine metabolism,Pyrimidine metabolism,Glutamate metabolism,Arginine and proline metabolism,gamma-Hexachlorocyclohexane degradation,Phenylalanine, tyrosine and tryptophan biosynthesis,Folate biosynthesis,Nitrogen metabolism,Aminoacyl-tRNA biosynthesis,ABC transporters,Two-component system,Bacterial chemotaxis,Flagellar assembly,RNA polymerase,DNA replication,Mismatch repair,Homologous recombination 0 PF00579_0 tRNA synthetases class I (W and Y) http://panditplus.org/show.php?in=PF00579&show=family 3.108904 3.386285 7 ATP binding [GO:0005524],nucleotide binding [GO:0000166],aminoacyl-tRNA ligase activity [GO:0004812] tRNA aminoacylation for protein translation [GO:0006418],translation [GO:0006412] cytoplasm [GO:0005737] Citrate cycle (TCA cycle),Biosynthesis of steroids,Oxidative phosphorylation,Purine metabolism,Pyrimidine metabolism,Glutamate metabolism,Alanine and aspartate metabolism,Methionine metabolism,Cysteine metabolism,Lysine biosynthesis,Arginine and proline metabolism,Tryptophan metabolism,Phenylalanine, tyrosine and tryptophan biosynthesis,beta-Alanine metabolism,Selenoamino acid metabolism,Aminosugars metabolism,Glyoxylate and dicarboxylate metabolism,Propanoate metabolism,C5-Branched dibasic acid metabolism,One carbon pool by folate,Reductive carboxylate cycle (CO2 fixation),Pantothenate and CoA biosynthesis,Porphyrin and chlorophyll metabolism,Nitrogen metabolism,Aminoacyl-tRNA biosynthesis,Two-component system,Bacterial chemotaxis,Flagellar assembly,RNA polymerase,DNA replication,Protein export,Type III secretion system,Type II secretion system,Nucleotide excision repair,Mismatch repair,Homologous recombination 1 PF00640_0 Phosphotyrosine interaction domain (PTB/PID) http://panditplus.org/show.php?in=PF00640&show=family 0.490417 0.5261918984 3 Glycine, serine and threonine metabolism,Valine, leucine and isoleucine biosynthesis,MAPK signaling pathway,ErbB signaling pathway,Notch signaling pathway,VEGF signaling pathway,Focal adhesion,Natural killer cell mediated cytotoxicity,Insulin signaling pathway,Alzheimer's disease,Pathways in cancer,Colorectal cancer,Glioma,Chronic myeloid leukemia 0